<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN"  "JATS-archivearticle1-3-mathml3.dtd"><article xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.3"><front><journal-meta><journal-id journal-id-type="nlm-ta">elife</journal-id><journal-id journal-id-type="publisher-id">eLife</journal-id><journal-title-group><journal-title>eLife</journal-title></journal-title-group><issn publication-format="electronic" pub-type="epub">2050-084X</issn><publisher><publisher-name>eLife Sciences Publications, Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">100123</article-id><article-id pub-id-type="doi">10.7554/eLife.100123</article-id><article-id pub-id-type="doi" specific-use="version">10.7554/eLife.100123.3</article-id><article-version article-version-type="publication-state">version of record</article-version><article-categories><subj-group subj-group-type="display-channel"><subject>Research Article</subject></subj-group><subj-group subj-group-type="heading"><subject>Neuroscience</subject></subj-group><subj-group subj-group-type="heading"><subject>Physics of Living Systems</subject></subj-group></article-categories><title-group><article-title>Imaging of brain electric field networks with spatially resolved EEG</article-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0001-7235-587X</contrib-id><email>lfrank@ucsd.edu</email><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="pa1">†</xref><xref ref-type="fn" rid="pa2">‡</xref><xref ref-type="other" rid="fund1"/><xref ref-type="other" rid="fund2"/><xref ref-type="other" rid="fund3"/><xref ref-type="other" rid="fund4"/><xref ref-type="fn" rid="con1"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0003-0420-6834</contrib-id><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="pa1">†</xref><xref ref-type="other" rid="fund1"/><xref ref-type="other" rid="fund2"/><xref ref-type="other" rid="fund3"/><xref ref-type="other" rid="fund4"/><xref ref-type="fn" rid="con2"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Krigolson</surname><given-names>Olave</given-names></name><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="fn" rid="pa3">§</xref><xref ref-type="fn" rid="con3"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Tapert</surname><given-names>Susan</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="pa4">#</xref><xref ref-type="other" rid="fund6"/><xref ref-type="other" rid="fund7"/><xref ref-type="other" rid="fund8"/><xref ref-type="other" rid="fund9"/><xref ref-type="fn" rid="con4"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Bickel</surname><given-names>Stephan</given-names></name><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="pa5">¶</xref><xref ref-type="fn" rid="pa6">**</xref><xref ref-type="other" rid="fund11"/><xref ref-type="fn" rid="con5"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Martinez</surname><given-names>Antigona</given-names></name><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="pa6">**</xref><xref ref-type="other" rid="fund12"/><xref ref-type="fn" rid="con6"/><xref ref-type="fn" rid="conf1"/></contrib><aff id="aff1"><label>1</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/0168r3w48</institution-id><institution>University of California, San Diego</institution></institution-wrap><addr-line><named-content content-type="city">La Jolla</named-content></addr-line><country>United States</country></aff><aff id="aff2"><label>2</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/04s5mat29</institution-id><institution>University of Victoria</institution></institution-wrap><addr-line><named-content content-type="city">Victoria</named-content></addr-line><country>Canada</country></aff><aff id="aff3"><label>3</label><institution>Nathan Kline Institute</institution><addr-line><named-content content-type="city">Orangeburg</named-content></addr-line><country>United States</country></aff><aff id="aff4"><label>4</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/05dnene97</institution-id><institution>Feinstein Institute for Medical Research</institution></institution-wrap><addr-line><named-content content-type="city">New York</named-content></addr-line><country>United States</country></aff></contrib-group><contrib-group content-type="section"><contrib contrib-type="editor"><name><surname>Jbabdi</surname><given-names>Saad</given-names></name><role>Reviewing Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/052gg0110</institution-id><institution>University of Oxford</institution></institution-wrap><country>United Kingdom</country></aff></contrib><contrib contrib-type="senior_editor"><name><surname>Behrens</surname><given-names>Timothy E</given-names></name><role>Senior Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/052gg0110</institution-id><institution>University of Oxford</institution></institution-wrap><country>United Kingdom</country></aff></contrib></contrib-group><author-notes><fn fn-type="present-address" id="pa1"><label>†</label><p>Department of Radiology, University of California San Diego, La Jolla, United States</p></fn><fn fn-type="present-address" id="pa2"><label>‡</label><p>Centerfor Functional MRI, Department of Radiology, University of California San Diego, La Jolla, United States</p></fn><fn fn-type="present-address" id="pa3"><label>§</label><p>Centre for Biomedical Research, University of Victoria, Victoria, Canada</p></fn><fn fn-type="present-address" id="pa4"><label>#</label><p>Dept of Psychiatry, UC San Diego, La Jolla, United States</p></fn><fn fn-type="present-address" id="pa5"><label>¶</label><p>Nathan Kline Institute, Orangeburg, United States</p></fn><fn fn-type="present-address" id="pa6"><label>**</label><p>The Feinstein Institutes for Medical Research, Northwell Health, Manhasset, United States</p></fn></author-notes><pub-date publication-format="electronic" date-type="publication"><day>05</day><month>06</month><year>2025</year></pub-date><volume>13</volume><elocation-id>RP100123</elocation-id><history><date date-type="sent-for-review" iso-8601-date="2024-06-10"><day>10</day><month>06</month><year>2024</year></date></history><pub-history><event><event-desc>This manuscript was published as a preprint.</event-desc><date date-type="preprint" iso-8601-date="2024-04-12"><day>12</day><month>04</month><year>2024</year></date><self-uri content-type="preprint" xlink:href="https://doi.org/10.21203/rs.3.rs-2432269/v2"/></event><event><event-desc>This manuscript was published as a reviewed preprint.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2024-12-13"><day>13</day><month>12</month><year>2024</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.100123.1"/></event><event><event-desc>The reviewed preprint was revised.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2025-05-08"><day>08</day><month>05</month><year>2025</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.100123.2"/></event></pub-history><permissions><copyright-statement>© 2024, Frank et al</copyright-statement><copyright-year>2024</copyright-year><copyright-holder>Frank et al</copyright-holder><ali:free_to_read/><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><ali:license_ref>http://creativecommons.org/licenses/by/4.0/</ali:license_ref><license-p>This article is distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use and redistribution provided that the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="elife-100123-v1.pdf"/><abstract><p>We present a method for spatially resolving the electric field potential throughout the entire volume of the human brain from electroencephalography (EEG) data. The method is <italic>not</italic> a variation of the well-known ‘source reconstruction’ methods, but rather a direct solution to the EEG inverse problem based on our recently developed model for brain waves that demonstrates the inadequacy of the standard ‘quasi-static approximation’ that has fostered the belief that such a reconstruction is not physically possible. The method retains the high temporal/frequency resolution of EEG, yet has spatial resolution comparable to (or better than) functional MRI (fMRI), without its significant inherent limitations. The method is validated using simultaneous EEG/fMRI data in healthy subjects, intracranial EEG data in epilepsy patients, comparison with numerical simulations, and a direct comparison with standard state-of-the-art EEG analysis in a well-established attention paradigm. The method is then demonstrated on a very large cohort of subjects performing a standard gambling task designed to activate the brain’s ‘reward circuit’. The technique uses the output from standard extant EEG systems and thus has potential for immediate benefit to a broad range of important basic scientific and clinical questions concerning brain electrical activity. By offering an inexpensive and portable alternative to fMRI, it provides a realistic methodology to efficiently promote the democratization of medicine.</p></abstract><kwd-group kwd-group-type="author-keywords"><kwd>electroencephalography</kwd><kwd>EEG</kwd><kwd>neuroimaging</kwd><kwd>brain waves</kwd><kwd>SPECTRE</kwd><kwd>functional magnetic resonance imaging</kwd><kwd>fMRI</kwd><kwd>entropy field decomposition</kwd><kwd>EFD</kwd></kwd-group><kwd-group kwd-group-type="research-organism"><title>Research organism</title><kwd>Human</kwd></kwd-group><funding-group><award-group id="fund1"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01- AG054049</award-id><principal-award-recipient><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name></principal-award-recipient></award-group><award-group id="fund2"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01-AG079280</award-id><principal-award-recipient><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name></principal-award-recipient></award-group><award-group id="fund3"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000001</institution-id><institution>National Science Foundation</institution></institution-wrap></funding-source><award-id>ACI-1550405</award-id><principal-award-recipient><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name></principal-award-recipient></award-group><award-group id="fund4"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000001</institution-id><institution>National Science Foundation</institution></institution-wrap></funding-source><award-id>AGS-2114860</award-id><principal-award-recipient><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name></principal-award-recipient></award-group><award-group id="fund5"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100014370</institution-id><institution>Simons Foundation Autism Research Initiative</institution></institution-wrap></funding-source><award-id>AR-HUMAN- 00004264</award-id><principal-award-recipient><name><surname>Frank</surname><given-names>Lawrence R</given-names></name></principal-award-recipient></award-group><award-group id="fund6"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>U24 AA021695</award-id><principal-award-recipient><name><surname>Tapert</surname><given-names>Susan</given-names></name></principal-award-recipient></award-group><award-group id="fund7"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>U01 AA021692</award-id><principal-award-recipient><name><surname>Tapert</surname><given-names>Susan</given-names></name></principal-award-recipient></award-group><award-group id="fund8"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>U01 DA041089</award-id><principal-award-recipient><name><surname>Tapert</surname><given-names>Susan</given-names></name></principal-award-recipient></award-group><award-group id="fund9"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01 DA057567</award-id><principal-award-recipient><name><surname>Tapert</surname><given-names>Susan</given-names></name></principal-award-recipient></award-group><award-group id="fund10"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/501100000038</institution-id><institution>Natural Sciences and Engineering Research Council of Canada</institution></institution-wrap></funding-source><award-id>Discovery Grant RGPIN 2016-0943</award-id><principal-award-recipient><name><surname>Krigolson</surname><given-names>Olave</given-names></name></principal-award-recipient></award-group><award-group id="fund11"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000055</institution-id><institution>National Institute on Deafness and Other Communication Disorders</institution></institution-wrap></funding-source><award-id>R01DC019979</award-id><principal-award-recipient><name><surname>Bickel</surname><given-names>Stephan</given-names></name></principal-award-recipient></award-group><award-group id="fund12"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R21MH123875</award-id><principal-award-recipient><name><surname>Martinez</surname><given-names>Antigona</given-names></name></principal-award-recipient></award-group><funding-statement>The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.</funding-statement></funding-group><custom-meta-group><custom-meta specific-use="meta-only"><meta-name>Author impact statement</meta-name><meta-value>A physics-based solution to the electroencephalography (EEG) inverse problem enables whole-brain electric field imaging with high spatial and temporal resolution using standard EEG systems.</meta-value></custom-meta><custom-meta specific-use="meta-only"><meta-name>publishing-route</meta-name><meta-value>prc</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="s1" sec-type="intro"><title>Introduction</title><p>The human brain communicates internally through exceedingly complex spatial and temporal patterns of electrical signals. Although these signals can be measured using electrodes placed on the surface of the scalp (electroencephalography [EEG]), the ability to reconstruct the spatial and temporal patterns within the brain has been thwarted by the complexity of the inverse problem: What time- (or frequency-) dependent volumetric electrical signals throughout the brain are consistent with the signal measured on the two-dimensional surface of the scalp (<xref ref-type="bibr" rid="bib58">Marinazzo et al., 2019</xref>; <xref ref-type="bibr" rid="bib64">Michel and Brunet, 2019</xref>)? There is a long-standing belief that it is not possible to detect and reconstruct electrical activity in subcortical regions deep within the brain from EEG due to inherent limitations of ‘volume conduction’ (<xref ref-type="bibr" rid="bib70">Nunez et al., 1997</xref>). However, this is not actually a physical limitation, but rather a consequence of the incomplete nature of the standard model used to characterize the EEG signal. Despite the obviously highly dynamical nature of the electrical activity that occurs within the very inhomogeneous and anisotropic composition of brain tissue, current EEG data analysis methods are still based on the assumption that the average tissue bioelectric properties (e.g. the average permittivity <inline-formula><mml:math id="inf1"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>ϵ</mml:mi><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> and conductivity <inline-formula><mml:math id="inf2"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>σ</mml:mi><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow></mml:mstyle></mml:math></inline-formula>) are sufficient to describe the electric fields <inline-formula><mml:math id="inf3"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>E</mml:mi></mml:mstyle></mml:math></inline-formula> in the brain. This leads to the approximation <inline-formula><mml:math id="inf4"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>ϵ</mml:mi><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>E</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mo>≪</mml:mo><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>σ</mml:mi><mml:mo stretchy="false">¯</mml:mo></mml:mover></mml:mrow><mml:mi>E</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> (<xref ref-type="bibr" rid="bib89">Taulu and Larson, 2021</xref>), which in turn leads to the assumption that the time dependence <inline-formula><mml:math id="inf5"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>E</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mstyle></mml:math></inline-formula> can be ignored in the ‘typical’ frequency range of brain signals (<xref ref-type="bibr" rid="bib41">Hämäläinen et al., 1993</xref>). This is the ubiquitous so-called ‘quasi-static’ approximation (<xref ref-type="bibr" rid="bib32">Gaugain et al., 2023</xref>; <xref ref-type="bibr" rid="bib79">Rapetti and Rousseaux, 2014</xref>).</p><p>In reality, it is precisely the anisotropic and inhomogeneous nature of brain tissue that must be taken into account in order to develop an accurate physical model of brain electromagnetic (EM) behavior, as we have described in our recently developed universal theory of brain waves called <italic>weakly evanescent transverse cortical waves</italic> (WETCOW) (<xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>; <xref ref-type="bibr" rid="bib27">Galinsky and Frank, 2021</xref>). The surprising consequence of this theory is the existence of electric field waves generated as a consequence of the complex tissue boundaries (e.g. surface waves) that permeate throughout the brain and are in precisely the frequency range of observed brain electrical activity. This theory explains the broad range of observed but seemingly disparate brain spatiotemporal electrical phenomena from extracellular spiking to cortical wave loops, all of which are predicated on the time dependence of the electric fields within the complex architecture of anisotropic and inhomogeneous tissue within the brain. This theory is necessary to provide a solution to the EEG inverse problem which, as shown below, produces a reconstruction of brain electrical activity with high temporal resolution and spatial resolution that is comparable to (or even exceeding that of) functional MRI (fMRI).</p></sec><sec id="s2" sec-type="results"><title>Results</title><sec id="s2-1"><title>A new physical theory of brain waves</title><sec id="s2-1-1"><title>Background</title><p>The fact that the brain produces electrical signals, or brain waves, has been known for over 150 years, and the first recording in humans using EEG was made almost 100 years ago. The pioneering work of Cajal in the late 19th century established the neuron doctrine that the nervous system is made up of discrete individual cells (neurons), which is one of the central tenets of modern neuroscience. Neurons are known to generate electrical signals as a result of their ability to maintain a voltage difference across their membranes that generates an electrochemical pulse known as an action potential that can travel rapidly along the axon. Consequently, the majority of approaches to characterizing brain dynamical behavior are based on the assumption that signal propagation along well-known anatomically defined pathways, such as major neural fiber bundles, tracts, or groups of axons, should be sufficient to deduce the dynamical characteristics of brain activity at different spatiotemporal scales. Characterizing brain networks is important for understanding many aspects of brain function, from neural processes underlying cognition to aberrant brain electrical activity, such as seen in epileptic seizures.</p><p>However, this view cannot explain the entire picture of observed brain activity propagation. Recently spatiotemporally organized, circular wave-like patterns of electrophysiological activity (<italic>traveling waves</italic>) were described at the macroscopic (scalp EEG, MEEG) and mesoscopic scale (invasive EEG), in animal models and humans, and during cognitive tasks and sleep (<xref ref-type="bibr" rid="bib66">Muller et al., 2018</xref>; <xref ref-type="bibr" rid="bib98">Zhang et al., 2018</xref>; <xref ref-type="bibr" rid="bib97">Zanos et al., 2015</xref>). These findings represent a formidable challenge for current network theories to explain such a remarkable synchronization across a multitude of different local networks.</p><p>In the following sections, we introduce the basic physical problem, present the rationale behind the ubiquitous ‘quasi-static approximations’, and detail why it is a poor model for brain activity, and then outline our recently developed more general universal theory of brain waves and how it ultimately leads to a solution of the inverse problem for EEG data.</p></sec><sec id="s2-1-2"><title>Maxwell’s equations in the brain</title><p>The general equations governing the propagation of EM waves are called Maxwell’s equations (<xref ref-type="bibr" rid="bib61">Maxwell, 1865</xref>) and in an inhomogeneous and anisotropic medium take the form<disp-formula id="equ1"><label>(1a)</label><mml:math id="m1"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">D</mml:mi><mml:mo>=</mml:mo><mml:mi>ρ</mml:mi></mml:mstyle></mml:mrow></mml:math></disp-formula><disp-formula id="equ2"><label>(1b)</label><mml:math id="m2"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">H</mml:mi><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mstyle></mml:mrow></mml:math></disp-formula><disp-formula id="equ3"><label>(1c)</label><mml:math id="m3"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">H</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula><disp-formula id="equ4"><label>(1d)</label><mml:math id="m4"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mrow><mml:mi mathvariant="bold-italic">H</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mrow><mml:mi mathvariant="bold-italic">J</mml:mi></mml:mrow><mml:mi>t</mml:mi></mml:msub></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf6"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold-italic">D</mml:mi><mml:mo>=</mml:mo><mml:mi>ε</mml:mi><mml:mspace width="thinmathspace"/><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> is the <italic>electric displacement field</italic>, where the (scalar) <italic>permittivity</italic> <inline-formula><mml:math id="inf7"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ε</mml:mi></mml:mstyle></mml:math></inline-formula> takes into account the polarization of the dielectric material in the electric field <inline-formula><mml:math id="inf8"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf9"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold-italic">H</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> is the magnetic field intensity, and the <italic>total current density</italic> <inline-formula><mml:math id="inf10"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula> is given by the sum of the free current density <inline-formula><mml:math id="inf11"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mi>f</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula> and bound current density <inline-formula><mml:math id="inf12"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula>:<disp-formula id="equ5"><label>(2)</label><mml:math id="m5"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>t</mml:mi><mml:mi>o</mml:mi><mml:mi>t</mml:mi><mml:mi>a</mml:mi><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>f</mml:mi><mml:mi>r</mml:mi><mml:mi>e</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mi>o</mml:mi><mml:mi>u</mml:mi><mml:mi>n</mml:mi><mml:mi>d</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>C</mml:mi><mml:mi>o</mml:mi><mml:mi>n</mml:mi><mml:mi>d</mml:mi><mml:mi>u</mml:mi><mml:mi>c</mml:mi><mml:mi>t</mml:mi><mml:mi>i</mml:mi><mml:mi>v</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>D</mml:mi><mml:mi>i</mml:mi><mml:mi>s</mml:mi><mml:mi>p</mml:mi><mml:mi>l</mml:mi><mml:mi>a</mml:mi><mml:mi>c</mml:mi><mml:mi>e</mml:mi><mml:mi>m</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></disp-formula></p><p>where<disp-formula id="equ6"><label>(3)</label><mml:math id="m6"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mi>C</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mi mathvariant="bold-italic">σ</mml:mi></mml:mrow><mml:mo>⋅</mml:mo><mml:mrow><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow><mml:mspace width="2em"/><mml:mo>,</mml:mo><mml:mspace width="2em"/><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>D</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">D</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mrow></mml:math></disp-formula></p><p>are the <italic>conductive current</italic> and <italic>displacement current</italic>, respectively.</p><p>This is the problem setup. To understand the electric fields in the brain, one needs to solve Maxwell’s equations. At this point, the standard procedure (e.g. <xref ref-type="bibr" rid="bib70">Nunez et al., 1997</xref>) is to simply ignore the temporal variations in both the magnetic field and the electric field by setting <inline-formula><mml:math id="inf13"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">H</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf14"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:mstyle></mml:math></inline-formula>. This simplified <xref ref-type="disp-formula" rid="equ3">Equation 1c</xref> to <inline-formula><mml:math id="inf15"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:mstyle></mml:math></inline-formula> and <xref ref-type="disp-formula" rid="equ4">Equation 1d</xref> to <inline-formula><mml:math id="inf16"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">H</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>C</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula> since eliminating the time dependence of the electric field eliminates the displacement current: <inline-formula><mml:math id="inf17"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>D</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">D</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mi>ε</mml:mi><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:mstyle></mml:math></inline-formula>. This is the so-called <italic>quasi-static approximation</italic> (<xref ref-type="bibr" rid="bib32">Gaugain et al., 2023</xref>; <xref ref-type="bibr" rid="bib79">Rapetti and Rousseaux, 2014</xref>) ubiquitous in EEG analysis methods.</p><p>What are the justifications for these simplifications? It turns out that in biological tissues, the inductive effects are small or negligible (<xref ref-type="bibr" rid="bib77">Plonsey and Heppner, 1967</xref>), so that eliminating the time dependence of the magnetic field is indeed justified. This is important as the simplified form of <xref ref-type="disp-formula" rid="equ3">Equation 1c</xref> implies, for simple vector relations, that the electric field can be written in terms of a <italic>field potential</italic> <inline-formula><mml:math id="inf18"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> since<disp-formula id="equ7"><label>(4)</label><mml:math id="m7"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">⇒</mml:mo><mml:mi>E</mml:mi><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>ϕ</mml:mi></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>Solving for the electric field <inline-formula><mml:math id="inf19"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>E</mml:mi></mml:mstyle></mml:math></inline-formula> is then equivalent to solving for <inline-formula><mml:math id="inf20"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula>. And we can ignore any magnetic field effects.</p><p>However, the assumption that the electric field does not vary with time is <italic>not</italic> justified in biological materials (<xref ref-type="bibr" rid="bib77">Plonsey and Heppner, 1967</xref>), and, therefore, the expression in <xref ref-type="disp-formula" rid="equ4">Equation 1d</xref> is correct as is - the displacement current must be retained. Maxwell’s equations in the brain thus take on a somewhat odd configuration in that they are, in the standard physics parlance, <italic>magnetostatic</italic> but not <italic>electrostatic</italic>.</p><p>It is somewhat ironic that the introduction of the displacement current, which was in some sense Maxwell’s greatest insight and the final piece of the puzzle in solving the equations of electromagnetism, turns out to be the key to the puzzle of brain activity, where it had once again been ignored.</p></sec><sec id="s2-1-3"><title>Consequences of the quasi-static approximation</title><p>Because of the ubiquity of the quasi-static approximation, it is worth pausing here to consider its consequences, since in our view they have led to confusion in the understanding of brain electrical activity and the problem of EEG reconstruction.<disp-formula id="equ8"><mml:math id="m8"><mml:mrow><mml:mrow><mml:mo fence="true" stretchy="true" symmetric="true"/><mml:mtable columnalign="right" rowspacing="4pt" columnspacing="1em"><mml:mtr><mml:mtd><mml:mspace width="thinmathspace"/><mml:mrow><mml:mi>E</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>ϕ</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>=</mml:mo><mml:mi>ρ</mml:mi><mml:mrow><mml:mo>/</mml:mo></mml:mrow><mml:mi>ε</mml:mi></mml:mtd></mml:mtr></mml:mtable><mml:mo>}</mml:mo></mml:mrow><mml:mspace width="1em"/><mml:mo stretchy="false">⇒</mml:mo><mml:mspace width="1em"/><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:mi>ϕ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mfrac><mml:mi>ρ</mml:mi><mml:mi>ε</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>which is Poisson’s equation and relates the electric field potential <inline-formula><mml:math id="inf21"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> to ‘sources’ <inline-formula><mml:math id="inf22"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ρ</mml:mi></mml:mstyle></mml:math></inline-formula>. The most striking aspect of this solution, though it was the obvious endpoint by construction, is that there is no time dependence in the solution. One would have guessed this to be a giant red flag for the description of brain electrical activity, but the persistence of this approach has nevertheless been tenacious. Consequently, from the perspective of EEG reconstruction, the problem is framed in terms of ‘source reconstruction’. We note that these equations are also called the ‘quasi-static volume conduction’ equations, and, therefore, this problem is often referred to as the ‘volume conduction’ problem.</p><p>There is also another massive source of confusion that is often used to justify the quasi-static approximation. The logic goes something like this. We know that the brain has, for example, alpha waves which for the sake of simplicity we will assume the frequency to be a typical value of <inline-formula><mml:math id="inf23"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi><mml:mo>=</mml:mo><mml:mn>10</mml:mn><mml:mi>H</mml:mi><mml:mspace width="thinmathspace"/><mml:mi>z</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>. For EM waves in a medium of permittivity <inline-formula><mml:math id="inf24"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ε</mml:mi></mml:mstyle></mml:math></inline-formula>, the wavelength of these waves is related to the velocity <inline-formula><mml:math id="inf25"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>v</mml:mi></mml:mstyle></mml:math></inline-formula> of the waves as<disp-formula id="equ9"><label>(5)</label><mml:math id="m9"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>λ</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mi>v</mml:mi><mml:mi>ω</mml:mi></mml:mfrac><mml:mspace width="2em"/><mml:mtext>where</mml:mtext><mml:mspace width="2em"/><mml:mi>v</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mi>c</mml:mi><mml:msqrt><mml:mi>ε</mml:mi></mml:msqrt></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>in which <inline-formula><mml:math id="inf26"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>c</mml:mi><mml:mo>=</mml:mo><mml:mn>3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>8</mml:mn></mml:mrow></mml:msup><mml:mspace width="thinmathspace"/><mml:mi>m</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula> is the speed of light. For a typical tissue permittivity <inline-formula><mml:math id="inf27"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ε</mml:mi><mml:mo>=</mml:mo><mml:mn>100</mml:mn></mml:mstyle></mml:math></inline-formula>, the wave velocity is <inline-formula><mml:math id="inf28"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>v</mml:mi><mml:mo>=</mml:mo><mml:mn>3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>7</mml:mn></mml:mrow></mml:msup><mml:mspace width="thinmathspace"/><mml:mi>m</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula> so that the wavelength is<disp-formula id="equ10"><label>(6)</label><mml:math id="m10"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>λ</mml:mi><mml:mo>=</mml:mo><mml:mfrac><mml:mi>v</mml:mi><mml:mi>ω</mml:mi></mml:mfrac><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mn>3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn>7</mml:mn></mml:msup></mml:mrow><mml:mn>10</mml:mn></mml:mfrac><mml:mo>=</mml:mo><mml:mn>3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn>6</mml:mn></mml:msup><mml:mi>m</mml:mi><mml:mo>=</mml:mo><mml:mn>3000</mml:mn><mml:mspace width="thinmathspace"/><mml:mi>k</mml:mi><mml:mi>m</mml:mi></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>Because the wavelength is so much greater than the spatial dimensions of the head, there can be no appreciable phase difference anywhere in the head, and EM wave propagation effects can be ignored. Indeed, this is true - there are effectively no EM wave propagation effects in the brain. But that argument is <italic>not</italic> a justification for the assumption of a time-independent electric field. Indeed, the logic is backward. One must first solve Maxwell’s equations under the proper conditions, then eliminate contributions that appear insignificant.</p><p>Indeed, if one simply assumes the absence of free charges, Maxwell’s equations <xref ref-type="disp-formula" rid="equ3">Equation 1c</xref> and <xref ref-type="disp-formula" rid="equ4">Equation 1d</xref> in a medium of permittivity <inline-formula><mml:math id="inf29"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ε</mml:mi></mml:mstyle></mml:math></inline-formula> and permeability <italic>μ</italic> combine to give<disp-formula id="equ11"><label>(7)</label><mml:math id="m11"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo>−</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:msup><mml:mi>v</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mfrac><mml:mfrac><mml:mrow><mml:msup><mml:mi mathvariant="normal">∂</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mi mathvariant="bold-italic">E</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="normal">∂</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mspace width="1em"/><mml:mo stretchy="false">⇒</mml:mo><mml:mspace width="1em"/><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">E</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mo>−</mml:mo><mml:mi>ω</mml:mi><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>the solution to which are complex plane waves, which in turn implies the <italic>dispersion relation</italic> <inline-formula><mml:math id="inf30"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi>ω</mml:mi><mml:mo>=</mml:mo><mml:mi>v</mml:mi><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo>|</mml:mo></mml:mrow></mml:mrow></mml:mstyle></mml:math></inline-formula>. As we will show below, the dispersion relation derived from the correct version of Maxwell’s equations is quite different and provides a key insight into the interesting characteristics of brain waves.</p><p>The fact that observed alpha waves have velocities many orders of magnitude slower than EM alpha waves should be an obvious clue that something else is going on. This much is recognized in that they are ascribed to ill-defined concepts such as ‘neuronal oscillations’. But a consequence of that should be a reexamination of Maxwell’s equations in light of these experimental observations. We will do that in the next section and demonstrate that these ‘slow’ waves are not mysterious at all, but a direct consequence of the displacement current and the inhomogeneity and anisotropy of the tissues. They are not EM waves, but surface waves.</p></sec><sec id="s2-1-4"><title>The general solution: WETCOW theory</title><p>In this section, we provide a brief outline of the more detailed theoretical description in <xref ref-type="bibr" rid="bib25">Galinsky and Frank, 2020a</xref>; <xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>. From the above discussion, the proper form of Maxwell’s equations to solve, from <xref ref-type="disp-formula" rid="equ1">Equation 1a and d</xref> and <xref ref-type="disp-formula" rid="equ6">Equation 3</xref>, is<disp-formula id="equ12"><mml:math id="m12"><mml:mrow><mml:mrow><mml:mo fence="true" stretchy="true" symmetric="true"/><mml:mtable columnalign="left left" rowspacing="4pt" columnspacing="1em"><mml:mtr><mml:mtd><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">D</mml:mi></mml:mtd><mml:mtd><mml:mo>=</mml:mo><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ρ</mml:mi></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="bold-italic">H</mml:mi></mml:mtd><mml:mtd><mml:mo>=</mml:mo><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="bold-italic">σ</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>c</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi mathvariant="bold-italic">D</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mtd></mml:mtr></mml:mtable><mml:mo>}</mml:mo></mml:mrow><mml:mspace width="1em"/><mml:mo stretchy="false">⇒</mml:mo><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mspace width="1em"/><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>ρ</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">J</mml:mi><mml:mrow><mml:mi>c</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where the RHS is a statement of <italic>charge continuity</italic>. These equations along with <xref ref-type="disp-formula" rid="equ7">Equation 4</xref> and <xref ref-type="disp-formula" rid="equ6">Equation 3</xref> give the charge continuity equation in terms of the quantity of interest, the electric field potential <inline-formula><mml:math id="inf31"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula>:<disp-formula id="equ13"><label>(8)</label><mml:math id="m13"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mfrac><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mi>ϕ</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi></mml:mrow><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>ϕ</mml:mi></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf32"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>=</mml:mo><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msub><mml:mi>σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mrow><mml:mo>/</mml:mo></mml:mrow><mml:mi>ε</mml:mi><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> is the scaled conductivity tensor. Thus, the inclusion of the displacement current has produced a wave equation.</p><p>A simple linear wave analysis, i.e., substitution of <inline-formula><mml:math id="inf33"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi>ϕ</mml:mi><mml:mo>∼</mml:mo><mml:mi>exp</mml:mi><mml:mo>⁡</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mo>−</mml:mo><mml:mi>i</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">r</mml:mi><mml:mo>−</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>]</mml:mo></mml:mrow></mml:mrow></mml:mstyle></mml:math></inline-formula>, where <inline-formula><mml:math id="inf34"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold-italic">k</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> is the wave number, <inline-formula><mml:math id="inf35"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold-italic">r</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> is the coordinate, <inline-formula><mml:math id="inf36"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="normal">Ω</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> is the frequency, and <inline-formula><mml:math id="inf37"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>t</mml:mi></mml:mstyle></mml:math></inline-formula> is the time, gives the following complex dispersion relation, now written in tensor form where <inline-formula><mml:math id="inf38"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mo fence="false" stretchy="false">{</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> and repeated indices are summed:<disp-formula id="equ14"><label>(9)</label><mml:math id="m14"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mi>i</mml:mi><mml:mrow><mml:mi mathvariant="bold">Ω</mml:mi></mml:mrow><mml:msubsup><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msubsup><mml:mo>−</mml:mo><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>−</mml:mo><mml:mi>i</mml:mi><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mo>,</mml:mo></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>which is composed of the real and imaginary components:<disp-formula id="equ15"><label>(10)</label><mml:math id="m15"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>γ</mml:mi><mml:mo>≡</mml:mo><mml:mrow><mml:mi mathvariant="fraktur">I</mml:mi></mml:mrow><mml:mo stretchy="false">[</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo stretchy="false">]</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mfrac><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:msup><mml:mi>k</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mfrac><mml:mspace width="2em"/><mml:mi>ω</mml:mi><mml:mo>≡</mml:mo><mml:mrow><mml:mi mathvariant="fraktur">R</mml:mi></mml:mrow><mml:mo stretchy="false">[</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo stretchy="false">]</mml:mo><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:msup><mml:mi>k</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>Several interesting features of this relation are worth noting. Because it is complex, it will result in both an oscillatory component (proportional to the frequency <inline-formula><mml:math id="inf39"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi></mml:mstyle></mml:math></inline-formula>) and a decaying component (proportional to the decay rate <inline-formula><mml:math id="inf40"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>γ</mml:mi></mml:mstyle></mml:math></inline-formula>). Both <inline-formula><mml:math id="inf41"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>γ</mml:mi></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf42"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi></mml:mstyle></mml:math></inline-formula> are functions of the tissue parameters through <inline-formula><mml:math id="inf43"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> so there is a direct connection between tissue properties and the wave dynamics. The tissue properties are encoded in the tensor <inline-formula><mml:math id="inf44"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> so spatial variations due either to inhomogeneity or anisotropy will also influence wave propagation. But perhaps the most interesting feature of this dispersion relation is that <inline-formula><mml:math id="inf45"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi><mml:mo>∼</mml:mo><mml:mn>1</mml:mn><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi>k</mml:mi></mml:mstyle></mml:math></inline-formula>, and so quite different than the dispersion relation for EM waves. This has significant consequences for the nature of brain electrodynamics, as shown below.</p><p>These results bring us to a central important point. For typical low-frequency (<inline-formula><mml:math id="inf46"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>≲</mml:mo><mml:mn>10</mml:mn><mml:mi>H</mml:mi><mml:mspace width="thinmathspace"/><mml:mi>z</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) <italic>average</italic> values of white (WM) and gray matter (GM) conductivity and permittivity (i.e. from <xref ref-type="bibr" rid="bib19">Gabriel et al., 1996a</xref>; <xref ref-type="bibr" rid="bib20">Gabriel et al., 1996b</xref>), the decay rates give strong wave damping, and no waves would be observed. For example, typical values for GM and WM are <inline-formula><mml:math id="inf47"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>ε</mml:mi><mml:mrow><mml:mi>G</mml:mi><mml:mi>M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>4.07</mml:mn><mml:mo>⋅</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mn>7</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi>ε</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf48"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>ε</mml:mi><mml:mrow><mml:mi>W</mml:mi><mml:mi>M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>2.76</mml:mn><mml:mo>⋅</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mn>7</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi>ε</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf49"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>σ</mml:mi><mml:mrow><mml:mi>G</mml:mi><mml:mi>M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>2.75</mml:mn><mml:mo>⋅</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>−</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> S/m, <inline-formula><mml:math id="inf50"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>σ</mml:mi><mml:mrow><mml:mi>W</mml:mi><mml:mi>M</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>2.77</mml:mn><mml:mo>⋅</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>−</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> S/m, where <inline-formula><mml:math id="inf51"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>ε</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>8.854187817</mml:mn><mml:mo>⋅</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>−</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> F/m is the vacuum permittivity so the damping rate <inline-formula><mml:math id="inf52"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>γ</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> is in the range of 75–115 s<sup>–1</sup>, which would give strong wave damping. This leads immediately to the question of the effects of the anisotropy, which is encoded in the scaled conductivity tensor <inline-formula><mml:math id="inf53"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula>. A full discussion of the effects of anisotropy is provided in <xref ref-type="bibr" rid="bib25">Galinsky and Frank, 2020a</xref>; <xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>, but, here, we review the key novel and important finding of the general theory: the existence of previously unrecognized (at least theoretically) waves <italic>transverse</italic> to the fiber direction.</p><p>To see this, we take a very simple idealized tissue model: fibers are packed in a half space aligned in <inline-formula><mml:math id="inf54"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>z</mml:mi></mml:mstyle></mml:math></inline-formula> direction, and their number decreases in <inline-formula><mml:math id="inf55"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>x</mml:mi></mml:mstyle></mml:math></inline-formula> direction in a relatively thin layer at the boundary. We assume that small cross fiber currents can be characterized by a small parameter <inline-formula><mml:math id="inf56"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϵ</mml:mi></mml:mstyle></mml:math></inline-formula> and represent the conductivity tensor as<disp-formula id="equ16"><label>(11)</label><mml:math id="m16"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>=</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mtable rowspacing="4pt" columnspacing="1em"><mml:mtr><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd><mml:mtd><mml:mn>0</mml:mn></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>ϵ</mml:mi><mml:mi>υ</mml:mi></mml:mtd><mml:mtd><mml:mn>0</mml:mn></mml:mtd><mml:mtd><mml:mi>υ</mml:mi></mml:mtd></mml:mtr></mml:mtable><mml:mo>)</mml:mo></mml:mrow><mml:mo>.</mml:mo></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf57"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>υ</mml:mi><mml:mo>≡</mml:mo><mml:mi>υ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula>. For the <inline-formula><mml:math id="inf58"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>υ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> dependence, we will assume that the conductivity is changing only through a relatively narrow layer at the boundary, and the conductivity gradient is directed along <inline-formula><mml:math id="inf59"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>x</mml:mi></mml:mstyle></mml:math></inline-formula> axis.<disp-formula id="equ17"><label>(12a)</label><mml:math id="m17"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mo stretchy="false">[</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>a</mml:mi><mml:mo stretchy="false">]</mml:mo><mml:msubsup><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>z</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>z</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mo>∥</mml:mo></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mspace width="2em"/><mml:mo>,</mml:mo><mml:mspace width="2em"/><mml:mo>∼</mml:mo><mml:msup><mml:mi>ϵ</mml:mi><mml:mn>0</mml:mn></mml:msup><mml:mspace width="1em"/><mml:mtext>(damped oscillator)</mml:mtext></mml:mstyle></mml:mrow></mml:math></disp-formula><disp-formula id="equ18"><label>(12b)</label><mml:math id="m18"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>y</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>y</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mo>⊥</mml:mo></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>0</mml:mn><mml:mspace width="2em"/><mml:mo>,</mml:mo><mml:mspace width="2em"/><mml:mo>∼</mml:mo><mml:msup><mml:mi>ϵ</mml:mi><mml:mn>1</mml:mn></mml:msup><mml:mspace width="1em"/><mml:mtext>(wave equation)</mml:mtext></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf60"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mi>υ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:msub><mml:mi>x</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf61"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>x</mml:mi></mml:mrow></mml:msub><mml:mi>υ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:msub><mml:mi>x</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> are considered constant evaluated at the boundary <inline-formula><mml:math id="inf62"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>x</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, and <inline-formula><mml:math id="inf63"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>ϵ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf64"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>ϵ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>1</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula> denote the zeroth and the first orders of <inline-formula><mml:math id="inf65"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϵ</mml:mi></mml:mstyle></mml:math></inline-formula> power. We emphasize that this approximation for <inline-formula><mml:math id="inf66"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>a</mml:mi></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf67"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>b</mml:mi></mml:mstyle></mml:math></inline-formula> is specifically allowed because we are considering a thin boundary layer problem.</p><p>The first equation, <xref ref-type="disp-formula" rid="equ17">Equation 12a</xref>, describes a potential along the fiber direction and is a damped oscillator equation that has a decaying solution. But the second equation, <xref ref-type="disp-formula" rid="equ18">Equation 12b</xref>, describes a potential perpendicular to the fiber direction and does not include a damping term; hence, it describes a pure wave-like solution that propagates in the thin layer transverse to the main fiber direction. Thus, although this wave-like solution <inline-formula><mml:math id="inf68"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>⊥</mml:mo></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> has a smaller amplitude than along the fiber action potential <inline-formula><mml:math id="inf69"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>∥</mml:mo></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, it can nevertheless have a much longer lifetime. Such waves are called <italic>weakly evanescent transverse cortical waves</italic>, or WETCOW for short.</p><p>Though these produce many interesting effects, two aspects are most important for the current application. First, the decay rates <inline-formula><mml:math id="inf70"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>γ</mml:mi></mml:mstyle></mml:math></inline-formula> for brain tissue are sufficiently small that waves can persist for time significantly longer than ‘spiking’. The persistence of the stable waves can be characterized by the ratio of the decay rate to the frequency, which from simple geometric considerations from <xref ref-type="disp-formula" rid="equ15">Equation 10</xref> for the longest waves (with the smallest amount of damping) with<disp-formula id="equ19"><mml:math id="m19"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mfrac><mml:mi>γ</mml:mi><mml:mi>ω</mml:mi></mml:mfrac><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:mfrac><mml:mo>≈∼</mml:mo><mml:mn>0.02</mml:mn><mml:mo>−</mml:mo><mml:mn>0.04.</mml:mn></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>Anisotropy (<inline-formula><mml:math id="inf71"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>⊥</mml:mo></mml:mrow></mml:msub><mml:mo>&lt;</mml:mo><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>∥</mml:mo></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>) will reduce this estimate even further (see <xref ref-type="bibr" rid="bib25">Galinsky and Frank, 2020a</xref>; <xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>, for more details). In other words, anisotropy can result in decay rates that can vary from these maximum (homogeneous) values above, all the way down to 0, based on the direction of propagation, increasingly supporting the existence of transverse waves. Without taking anisotropy into account, i.e., assuming the mean tissue values above as is done in the ‘standard model’, the decay is so rapid that transverse weakly evanescent waves are not supported.</p><p>Second, the inverse relationship between the frequency and wavelength in the dispersion relation (<xref ref-type="disp-formula" rid="equ14">Equation 9</xref>) means that waves can extend throughout the entire volume of the brain. One can also recognize immediately from <xref ref-type="disp-formula" rid="equ15">Equation 10</xref> the existence of significant phase variations across the brain (characterized by both phase and group velocity) proportional to tensor products <inline-formula><mml:math id="inf72"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">Σ</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf73"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold-italic">k</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> that characterize wave propagation normal to the conductivity gradient and thus normal to the fiber orientation. This contradicts the long-standing belief that there are no significant phase variations across the head. There are, but they are not due to EM waves, but WETCOW waves.</p><p>The existence of these waves has profound implications for the understanding of brain electrical activity and communications and has been shown to explain a wide range of observed collective brain behaviors, including spiking in the extracellular space (<xref ref-type="bibr" rid="bib25">Galinsky and Frank, 2020a</xref>; <xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>), rapid signal synchronization (<xref ref-type="bibr" rid="bib27">Galinsky and Frank, 2021</xref>) that provides a mechanism for learning and memory (<xref ref-type="bibr" rid="bib29">Galinsky and Frank, 2023b</xref>), and neuronal avalanches (<xref ref-type="bibr" rid="bib28">Galinsky and Frank, 2023a</xref>; <xref ref-type="bibr" rid="bib30">Galinsky and Frank, 2023c</xref>). And of course, they require rethinking what is meant by a brain ‘network’, since signal propagation must now be considered not only along fiber pathways, but between structures that may not even be neuronally directionally connected. But for the present purposes, they imply the existence of waves of electrical activity throughout the brain.</p></sec></sec><sec id="s2-2"><title>Solution to the inverse EEG problem</title><sec id="s2-2-1"><title>Theory</title><p>The WETCOW theory predicts the existence of waves satisfying Maxwell’s equations in the brain where the morphology and tissue characteristics have been properly taken into account. The EEG inverse problem therefore involves estimating the electric field potential <inline-formula><mml:math id="inf74"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> that satisfies Maxwell’s equations constructed with the tissue properties of a particular brain, satisfying boundary conditions determined by the morphology of the brain, and consistent with measurements made in an array of electrodes on the surface of the brain. Our method for solving the inverse EEG problem can be summarized as follows. Given a standard EEG dataset from <inline-formula><mml:math id="inf75"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>N</mml:mi></mml:mstyle></mml:math></inline-formula> electrodes and a high-resolution anatomical (HRA) MRI dataset with high contrast between GM and WM, the solution to the inverse EEG problem can be formulated as an approximation for the volumetric distribution of electrostatic potential inside the complex inhomogeneous and anisotropic tissues and complicated morphology of the MRI domain (<xref ref-type="bibr" rid="bib23">Galinsky et al., 2018</xref>).</p><p>The solution to the EEG inverse problem entails solving <xref ref-type="disp-formula" rid="equ13">Equation 8</xref> for the electric field potential <inline-formula><mml:math id="inf76"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula>. Taking the temporal Fourier transform (i.e. replacing <inline-formula><mml:math id="inf77"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi mathvariant="normal">∂</mml:mi></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo stretchy="false">→</mml:mo><mml:mo>−</mml:mo><mml:mi>I</mml:mi><mml:mi>ω</mml:mi></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf78"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>I</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mstyle></mml:math></inline-formula>, where <inline-formula><mml:math id="inf79"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi></mml:mstyle></mml:math></inline-formula> is the frequency), the electrostatic potential satisfies the equation in the Fourier (i.e. frequency) domain, and using the notation <inline-formula><mml:math id="inf80"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi mathvariant="normal">∂</mml:mi><mml:msub><mml:mi>q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf81"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo fence="false" stretchy="false">{</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mstyle></mml:math></inline-formula>, can be written in tensor form as<disp-formula id="equ20"><label>(13)</label><mml:math id="m20"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo>−</mml:mo><mml:mi>I</mml:mi><mml:mi>ω</mml:mi><mml:mi>ε</mml:mi><mml:msup><mml:mi>δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mi>ω</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mi>I</mml:mi><mml:mi>ω</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mi>ε</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:msup><mml:mi>δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo>−</mml:mo><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mi>ω</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow><mml:mi class="mathcal" mathvariant="script">F</mml:mi></mml:mrow><mml:mi>ω</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf82"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>δ</mml:mi></mml:mstyle></mml:math></inline-formula> is the Dirac delta function, and a summation is assumed over repeated indices. This can be expressed in the form <inline-formula><mml:math id="inf83"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>L</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>ω</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>R</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>ω</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi class="MJX-tex-caligraphic" mathvariant="script">F</mml:mi></mml:mrow><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>ω</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> in terms of the operators <inline-formula><mml:math id="inf84"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mi>L</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mo>≡</mml:mo><mml:msup><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, a frequency-dependent source term <inline-formula><mml:math id="inf85"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mover><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi class="MJX-tex-caligraphic" mathvariant="script">F</mml:mi></mml:mrow><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>ω</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> and the operator<disp-formula id="equ21"><mml:math id="m21"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mover><mml:mi>R</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mo>≡</mml:mo><mml:mfrac><mml:mrow><mml:mi>σ</mml:mi><mml:mo>+</mml:mo><mml:mi>I</mml:mi><mml:mi>ω</mml:mi><mml:mi>ε</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>σ</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi>ω</mml:mi><mml:mn>2</mml:mn></mml:msup><mml:msup><mml:mi>ε</mml:mi><mml:mn>2</mml:mn></mml:msup></mml:mrow></mml:mfrac><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mi>I</mml:mi><mml:mi>ω</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mi>ε</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:msup><mml:mi>δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo>−</mml:mo><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo stretchy="false">)</mml:mo><mml:mo>−</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo>−</mml:mo><mml:mi>σ</mml:mi><mml:msup><mml:mi>δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf86"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>=</mml:mo><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> is a local tissue conductivity tensor and <inline-formula><mml:math id="inf87"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi>σ</mml:mi><mml:mo>=</mml:mo><mml:mi>T</mml:mi><mml:mi>r</mml:mi><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi><mml:mrow><mml:mo>/</mml:mo></mml:mrow><mml:mn>3</mml:mn><mml:mo>=</mml:mo><mml:msubsup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msubsup><mml:mrow><mml:mo>/</mml:mo></mml:mrow><mml:mn>3</mml:mn></mml:mrow></mml:mrow></mml:mstyle></mml:math></inline-formula> is an isotropic local conductivity. Terms in square brackets show that the parts of <inline-formula><mml:math id="inf88"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mover><mml:mi>R</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> can be interpreted in terms of different tissue characteristics and may be important for understanding the origin of sources of the electro-/magnetostatic signal detected by the EEG sensors. The first term (<inline-formula><mml:math id="inf89"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:msup><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msup><mml:mi>ε</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) corresponds to areas with sudden change in permittivity, e.g., the WM/GM interface. The second term (<inline-formula><mml:math id="inf90"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo stretchy="false">)</mml:mo><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) corresponds to regions where the conductivity gradient is the strongest, i.e., the GM/CSF (cerebral spinal fluid) boundary. Finally, the last term (<inline-formula><mml:math id="inf91"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub><mml:mo>−</mml:mo><mml:mi>σ</mml:mi><mml:msup><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">∂</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) includes areas with the strongest conductivity anisotropies, e.g., input from major WM tracts. The frequency- and position-dependent internal sources <inline-formula><mml:math id="inf92"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mrow><mml:mover><mml:mrow><mml:mi class="mathcal" mathvariant="script">F</mml:mi></mml:mrow><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> can be used to incorporate various nonlinear processes, including multiple frequency effects of the efficient synchronization/desynchronization by brain waves or effects of their critical dynamics. This term is ignored in the current paper because they are higher-order terms that complicate the processing (and interpretation) but do not substantially change the main results. They will be considered in future work.</p></sec><sec id="s2-2-2"><title>Numerical implementation</title><p>The inverse problem can be solved by constructing an approximate solution for the potential <inline-formula><mml:math id="inf93"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> across an entire brain volume iteratively as <inline-formula><mml:math id="inf94"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mover><mml:mi mathvariant="bold-italic">L</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:msubsup><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mrow><mml:mover><mml:mi mathvariant="bold-italic">R</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:msubsup><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo>−</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf95"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mrow><mml:mover><mml:mi>ϕ</mml:mi><mml:mo stretchy="false">~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>ω</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>K</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msub><mml:mi>α</mml:mi><mml:mrow><mml:mi>K</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mrow><mml:mo mathvariant="bold">∑</mml:mo></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>K</mml:mi></mml:mrow></mml:msubsup><mml:msubsup><mml:mi>ϕ</mml:mi><mml:mrow><mml:mi>ω</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>(<xref ref-type="bibr" rid="bib23">Galinsky et al., 2018</xref>), where a single iteration forward solution is found using a Fourier-space pseudo-spectral approach (<xref ref-type="bibr" rid="bib33">Gottlieb and Orszag, 1977</xref>). The volumetric frequency-dependent potential <inline-formula><mml:math id="inf96"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mrow><mml:mover><mml:mi>ϕ</mml:mi><mml:mo stretchy="false">~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>ω</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>K</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> is the central quantity of interest, and it can be calculated over arbitrary frequency ranges <inline-formula><mml:math id="inf97"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>ω</mml:mi><mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mo>…</mml:mo><mml:msub><mml:mi>ω</mml:mi><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, such as the standard frequency bands of interest in EEG. These potentials can then be converted to the time domain <inline-formula><mml:math id="inf98"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mrow><mml:mover><mml:mi>ϕ</mml:mi><mml:mo stretchy="false">~</mml:mo></mml:mover></mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> from which space-time modes can be determined using our <italic>entropy field decomposition</italic> (EFD) method for analysis for complex nonlinear systems (<xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>; <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>) (see Appendix 1: The entropy field decomposition). Alternatively, as in this work, the estimated potentials <inline-formula><mml:math id="inf99"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mrow><mml:mover><mml:mi>ϕ</mml:mi><mml:mo stretchy="false">~</mml:mo></mml:mover></mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> can be used in the joint estimation scheme presented in <xref ref-type="bibr" rid="bib24">Galinsky and Frank, 2019</xref>, as an additional modality <inline-formula><mml:math id="inf100"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mi>Q</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mi>E</mml:mi></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> in the intermodality coupling matrix <inline-formula><mml:math id="inf101"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mrow><mml:mi mathvariant="bold-script">Q</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula> (see Appendix 1: Multi-modality EFD (JESTER)). The potential depends upon the electrical properties of the tissue permittivity, permeability, and conductivity. These parameters can be estimated from the HRA MRI data. Using <italic>joint estimation with entropy regularization</italic> (JESTER), data from MRI can be used to define the complex brain tissue morphology and constrain the tissue-specific values of <inline-formula><mml:math id="inf102"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf103"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ε</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>. This procedure of inverting the WETCOW brain wave model constrained by MRI-defined tissue properties is called <italic>SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy</italic> (SPECTRE).</p><p>An approximate pseudo-spectral solution for the potential <inline-formula><mml:math id="inf104"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> was constructed across an entire brain volume using either MRI Montreal Neurological Institute (MNI) 2 mm resolution (91 × 109 × 91 voxel dimensions), 1 mm MNI resolution (182 × 218 × 182 voxel dimensions), or 0.7 mm resolution (207 × 256 × 215 voxel dimensions). For the current study, we only used the anatomical data for estimation and assignment of different tissue types, and no diffusion MRI (dMRI) data was used. To register between different modalities, including MNI, HRA, fMRI, etc., and to transform the tissue assignment into an appropriate space, we used the <italic>symplectomorphic registration</italic> (SYMREG) registration method (<xref ref-type="bibr" rid="bib24">Galinsky and Frank, 2019</xref>).</p><p>The pseudo-spectral computational approach used in SPECTRE has some important advantages over the finite/boundary element approaches typically used for electrostatic modeling of brain activity (<xref ref-type="bibr" rid="bib34">Gramfort et al., 2010</xref>; <xref ref-type="bibr" rid="bib51">Kybic et al., 2005</xref>; <xref ref-type="bibr" rid="bib93">von Ellenrieder et al., 2009</xref>; <xref ref-type="bibr" rid="bib36">Gutiérrez and Nehorai, 2008</xref>; <xref ref-type="bibr" rid="bib83">Schimpf et al., 2002</xref>; <xref ref-type="bibr" rid="bib10">Ermer et al., 2001</xref>; <xref ref-type="bibr" rid="bib65">Mosher et al., 1999</xref>). It does not use surface meshes and so does not require limiting the location of activity sites to a small number of surfaces with fixed number of static dipole sources constrained to the surfaces. And the distribution of both electrostatic and geometric properties of the media (conductivity, permittivity, anisotropy, inhomogeneity - derived from the MRI data) is incorporated at every location throughout the volume. It is thus able to find a time-dependent spatial distribution of the electrostatic potential at every space-time location of a multidimensional volume as a superposition of source inputs from every voxel of the same volume (<xref ref-type="bibr" rid="bib23">Galinsky et al., 2018</xref>). These traits allow it to model wave-like signal propagation inside the volume and can detect and characterize significantly more complex dynamical behavior of the sources of the electrostatic activity recorded at the sensor locations than traditional methods.</p></sec></sec></sec><sec id="s3" sec-type="methods"><title>Methods</title><sec id="s3-1"><title>Summary of SPECTRE</title><p>The SPECTRE procedure can be summarized as follows. The data are the raw output from a standard EEG system and an HRA MRI image. A standard template (e.g. T1-weighted anatomical MNI [<xref ref-type="bibr" rid="bib11">Fonov et al., 2009</xref>]) is typically used so that an MRI acquisition is not required. The EEG data is registered to the HRA template using our nonlinear SYMREG (<xref ref-type="bibr" rid="bib24">Galinsky and Frank, 2019</xref>). The different tissue types and their geometry are determined from the HRA using our <italic>spherical wave decomposition</italic> algorithm (<xref ref-type="bibr" rid="bib21">Galinsky and Frank, 2014</xref>). The estimated geometry is used to define the sampling points for the pseudo-spectral algorithm. The spatial variations in the tissue bioelectric properties are estimated from the spatial variation in the segmented tissue types. The pseudo-spectral algorithm is then solved for the electric field potential that best fits the raw EEG data at each electrode, constrained by the local tissue properties within the brain volume. The resulting potential field <inline-formula><mml:math id="inf105"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mi>ϕ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula> is then decomposed into spatial-temporal modes using the EFD algorithm (<xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>; <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>) constrained by the anatomical atlas using JESTER (<xref ref-type="bibr" rid="bib22">Galinsky and Frank, 2017</xref>).</p><p>In the present study, the HRA data were used to identify and segment the GM and WM regions in order to define their separate geometries and the spatial variations in the tissue bioelectric properties (e.g. conductivity and permittivity) to go into the estimation of the field potential. However, SPECTRE is quite flexible in its ability to incorporate additional tissue information from other modalities, so as to improve estimates of the local tissue conductivity tensor from dMRI data, where it is available. We did not do so in the current study as the goal was to demonstrate that SPECTRE can be achieved without the necessity of acquiring any MRI data, which has significant practical implications.</p><p>The conductivity tensor is not exactly the same as the diffusion tensor in brain tissues, but they are closely related. While both tensors describe transport properties in brain tissue, they represent different physical processes. The conductivity tensor is often assumed to share the same eigenvectors as the diffusion tensor. There is a strong linear relationship between the conductivity and diffusion tensor eigenvalues, as supported by theoretical models and experimental measurements. For the current study, we only used the anatomical data for estimation and assignment of different tissue types, and no dMRI data was used.</p><p>To understand intuitively why SPECTRE is capable of reconstructing EM activity through the entire brain, including deep within subcortical structures, a simple idealized example is helpful. Consider two point current sources of different frequencies, one in the cortical layer close to the scalp, the second deep within the subcortical structures of the brain. Consider a single sensor placed on the scalp collinear with the two sources. Standard source localization methods will not see the deep source, since there is no frequency dependence, and the signal falloff is simply a function of the distance from the sensor. Therefore, the close source completely dominates the signal model. Since all tomographic imaging methods (e.g. MRI, CT, etc.) depend strongly on both the spatial and temporal sampling of the measured physical system, this effective invisibility of currents in the standard quasi-static model essentially precludes the solution of the true inverse EEG problem and necessitates the artificial construction of assumed dipole distribution on pre-chosen artificial internal structures. In contrast, in SPECTRE, the sources are not dipoles, but frequency sources that extend throughout the entire brain volume subject to the boundary conditions imposed by both the tissues geometry and its spatially and frequency-dependent properties. The surface electrodes are assumed to be sensing EM waves emanating from the entire brain across a broad-frequency spectrum limited only by the sensors. Used in conjunction with an HRA MRI data that provides the spatial distribution of the frequency-dependent tissue electrical properties that constrain the possible solution, SPECTRE can invert the wave equations to provide an estimate of the spatiotemporal distribution of the electric field potential.</p></sec><sec id="s3-2"><title>Mode reconstruction</title><p>After estimating the nonlinear spatially and temporally varying electric field potential, we still face the challenge of interpreting it, much like raw fMRI data must be analyzed to identify activation patterns. At this stage, the issues of fMRI and SPECTRE analysis are essentially the same. In general, this is a difficult task because brain activity exhibits a highly complex spatiotemporal structure. Conceptually, one can view ‘activation patterns’ (or modes) as groups of spatially contiguous voxels sharing similar time courses, which may synchronize with other local regions located anywhere else in the brain. For example, the ‘default mode’ network comprises several such contiguous regions - such as the dorsal medial prefrontal cortex (PFC), posterior cingulate cortex, precuneus, and angular gyrus - that operate together.</p><p>It is important to highlight several complicating factors inherent in time-dependent volumetric data from modern imaging systems, including neuroimaging scanners and meteorological radar. First, estimating spatiotemporal patterns requires addressing both spatial and temporal variations simultaneously. For example, it is not sufficient to analyze temporal patterns first and then spatial patterns after - a common practice in fMRI data analysis. One should not compute the correlation of a voxel with all other voxels (temporal analysis) and then use a clustering method (spatial analysis) to define a region of ‘significant’ activity. Instead, the data should be viewed as space-time points whose space-time trajectories must be estimated as a whole. Second, time courses are typically neither simple nor periodic; they can follow virtually any form dictated by the underlying physical processes. Finally, data are often multiparametric, with parameters influencing (i.e. coupled to) one another. For instance, in fMRI, blood flow and electrophysiology are coupled and influence each other.</p><p>The problem then becomes one of detecting the multiple modes in complex nonlinear systems. We have addressed this problem previously in our development of the EFD method, which is a probabilistic framework for estimating spatial-temporal modes of complex nonlinear systems containing multivariate interacting fields (<xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>; <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>; <xref ref-type="bibr" rid="bib17">Frank et al., 2018</xref>; <xref ref-type="bibr" rid="bib18">Frank et al., 2024</xref>). These concepts are described in greater detail in Appendix 1: Entropy field decomposition. It is formally based on a field-theoretic mathematical formulation of Bayes’ theorem that enables the hierarchy of multiple orders of field interactions, including coupling between fields. Its practical utility is enabled by the incorporation of the theory of <italic>entropy spectrum pathways</italic> (ESPs) (<xref ref-type="bibr" rid="bib14">Frank and Galinsky, 2014</xref>), which uses the space-time correlations in each individual dataset to automatically select the very limited number of highly relevant field interactions. In short, it selects the configurations with maximum path entropy, summarized in the equilibrium (i.e. long time) distribution <inline-formula><mml:math id="inf106"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>μ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>∗</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>. While each of these modes provides unique information on coherent spatiotemporal activity, for characterizing the total brain activity, it is often most useful and efficient to sum these modes.</p><p>A strength of the EFD method is that it uses prior information contained in individual datasets - there are no training datasets or averages across datasets - just the prior information contained within the single dataset of interest. This method has shown utility in resting-state fMRI data (<xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>) and in meteorology in the application to severe local storms, in particular tornadic supercells (<xref ref-type="bibr" rid="bib17">Frank et al., 2018</xref>). The fact that this method uses prior information embedded within single datasets without the need for any ‘training’ is of significance to clinical studies in which important individual variations can be lost in the averaging process. It is also particularly important in the current paper where our validation necessitates comparison with single subject studies.</p></sec><sec id="s3-3"><title>Validation</title><p>Validation of any neuroimaging methods is problematic because it is not possible to directly measure brain activity at every location in the brain. Nevertheless, three methods are obvious candidates for assessment of SPECTRE’s validity.</p><p>The first is comparison with fMRI, the current method of choice for whole-brain spatial localization of brain activity. However, the association of fMRI with a ‘standard’ for EEG is problematic because it is not measuring electrical activity, but the magnetization changes in hemoglobin as blood becomes deoxygenated during brain activity. The timescale and location of these changes can be vastly different than those produced by EEG signals. Nevertheless, its capability of spatially localizing activated brain regions merits a comparison. The most direct comparison is between fMRI and EEG data collected simultaneously, which guarantees that the brain activity measured is identical in both experiments. Such ‘simultaneous fMRI/EEG’ experiments are not particularly common as collecting EEG data within an MRI scanner during imaging is notoriously difficult, and the MRI procedure significantly distorts the EEG signal. However, a recent open-source study provides such data which is sufficient for our purposes.</p><p>A more direct method for validating the ability of SPECTRE to reconstruct localized electrical activity can be constructed from intracranial EEG (iEEG) recordings collected during epilepsy studies. Such measurements consist of specially designed EEG sensors distributed linearly along a probe that is inserted deep within a brain that has been exposed by surgical removal of a portion of the skull. By selecting only these electrodes near the brain surface from the full array of electrodes, we can synthesize an artificial surface distribution of electrodes to mimic a standard noninvasive EEG experiment (albeit with a limited coverage of the brain). We have access to such data through an ongoing study which enabled this method of validation as well.</p><p>Lastly, a comparison with current ‘source localization’ methods would seem to be in order (<xref ref-type="bibr" rid="bib3">Biasiucci et al., 2019</xref>). This comparison turns out to be the most problematic as these methods all employ a very different, and quite limited, physical model for the EEG signal and suffer from computational limitations as well. Despite attempts to make a reasonably valid comparison, it was determined that this was not possible, as described below.</p><sec id="s3-3-1"><title>Validation with simultaneous fMRI/EEG visual task</title><p>It is notoriously difficult to get high-quality EEG data in simultaneous fMRI/EEG studies as the presence of the rapidly varying magnetic fields present in an fMRI acquisition distorts the EEG signal. However, one recent open-source simultaneous fMRI/EEG study of a well-controlled visual task (the periodic flashing checkerboard) on multiple subjects (<xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>, available from the Nathan Kline Institute) provides important data to address this question.</p><p>The fMRI procedure samples the data at relatively coarse temporal sampling and thus is most sensitive to low-frequency variations in blood oxygenation level-dependent (BOLD) activity. The most useful comparison of SPECTRE with fMRI is therefore in the lowest frequency band, <inline-formula><mml:math id="inf107"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>0</mml:mn><mml:mo>−</mml:mo><mml:mn>1</mml:mn><mml:mi>H</mml:mi><mml:mspace width="thinmathspace"/><mml:mi>z</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> (for details on the fMRI acquisitions, see Visual paradigm data). The SPECTRE reconstruction in this frequency band is shown in <xref ref-type="fig" rid="fig1">Figure 1</xref> and demonstrates the ability of SPECTRE to faithfully reconstruct the spatial distribution similar to fMRI. Importantly, this comparison was performed on data from a single subject, since brain activity patterns can vary significantly between individuals, and averaging over multiple subjects obscures specific spatial variations important for validation. In the top rows of <xref ref-type="fig" rid="fig1">Figure 1</xref> is shown the fMRI EFD mode that automatically detects the activation in the primary visual cortex. In the middle row are shown the SPECTRE modes reconstructed using the 2 mm MNI anatomical atlas, chosen because it was closest in resolution (<inline-formula><mml:math id="inf108"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>2</mml:mn><mml:mi>m</mml:mi><mml:msup><mml:mi>m</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>) to the fMRI data (<inline-formula><mml:math id="inf109"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>3</mml:mn><mml:mi>m</mml:mi><mml:msup><mml:mi>m</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>3</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>). The very close correspondence between the spatial patterns is evident.</p><fig id="fig1" position="float"><label>Figure 1.</label><caption><title>Comparison of entropy field decomposition (EFD) reconstructed functional MRI (fMRI) activity (top) with SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) electroencephalography (EEG) reconstruction in the frequency band 0–1 Hz at both 2 mm (middle) and 1 mm (bottom) spatial resolution (axial view) from a single representative subject from an open-source study with simultaneous fMRI and EEG (<xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>).</title><p>In both cases, the weighted sum of the power over all modes is shown. The task was a simple 8 Hz flashing checkerboard with 4 on/off cycles. The nonlinear registration of the fMRI to the anatomical template in the fMRI data (top) is imperfect because of significant field-induced nonlinear geometric distortions in the fMRI data. The colors are the weighted sum over all estimated amplitudes of the activation modes. Intensities are scaled between 0 and 1, and thresheld at 0.6.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig1-v1.tif"/></fig><p>The bottom rows in <xref ref-type="fig" rid="fig1">Figure 1</xref> clearly demonstrate one of the most compelling, and perhaps surprising, aspects of SPECTRE - its ability to reconstruct activation at spatial resolution <italic>significantly higher</italic> than fMRI. This is a consequence of the SPECTRE reconstruction being based on the solution of the propagation of EM waves through specific tissue morphologies and bioelectric properties, provided by arbitrary resolution anatomical MRI data. The finer the resolution of the MRI scans, the more details can be available for the reconstruction. This is, of course, dependent upon the number and distribution of the EEG sensors, but certainly holds for the standard array configurations used in this paper.</p><p>Although it is an almost universally believed notion that EEG and fMRI are complementary because EEG has excellent temporal resolution but poor spatial resolution, while fMRI has poor temporal resolution but good spatial resolution, in fact, SPECTRE EEG reconstructions can achieve much higher <italic>intrinsic</italic> temporal <italic>and</italic> spatial resolution. Moreover, because there are no spatial distortions in SPECTRE, this mitigates one of the aspects of fMRI that most confounds spatial localization through signal loss and nonlinear geometric distortions. This is shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p><fig id="fig2" position="float"><label>Figure 2.</label><caption><title>A detailed visualization of three orthogonal views of data in <xref ref-type="fig" rid="fig1">Figure 1</xref> demonstrating the fine spatial resolution produced by SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE), and the ability to reconstruct activations in regions prone to severe distortions in functional MRI (fMRI), such as the frontal lobes and cerebellum.</title><p>The colors are the weighted sum over all estimated amplitudes of the activation modes. Intensities are scaled between 0 and 1, and thresheld at 0.6.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig2-v1.tif"/></fig><p>The slice-by-slice correlation coefficient between the activation patterns estimated by SPECTRE and fMRI is shown in <xref ref-type="fig" rid="fig3">Figure 3</xref>. Regions of very high correlation, most notable in the inferior brain regions, indicate the similarity in activation patterns detected between the two completely different neuroimaging methods (SPECTRE and fMRI). The correlations are not as strong in the superior regions of the brain, possibly due to the increased distortions in that region in this fMRI dataset. Even with perfect activation detection by both methods, the correlations would not be perfect (i.e. 1) as the two methods are measuring different physical processes. However, the smooth variations are indicative of nonrandom correlations between two vastly different imaging modalities.</p><fig id="fig3" position="float"><label>Figure 3.</label><caption><title>Correlation coefficient in each axial slice (from inferior to superior) between the activation patterns estimated by SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) electroencephalography (EEG) and the functional MRI (fMRI) for the data in <xref ref-type="fig" rid="fig1">Figure 1</xref>.</title><p>Regions of high correlation indicate the similarity in activation patterns detected between the two completely different neuroimaging methods (SPECTRE and fMRI). Reduction of the correlations in the superior regions of the brain, possibly due to the increased distortions in that region in this fMRI dataset.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig3-v1.tif"/></fig><p>It should be noted that the ‘simple’ periodic flickering checkerboard stimulus not only activates the primary visual cortex but activates other visual and supplementary fields as well, as is evident from the activity patterns in <xref ref-type="fig" rid="fig1">Figure 1</xref>. A simple stimulus does not imply a simple activation pattern. This notion was a primary motivation for our development of the EFD method for fMRI (<xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>). The activation mode reconstructions for both the fMRI and SPECTRE data are based on the EFD, which detects complex nonlinear interacting spatial-temporal modes of activity (<xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>). Thus, although the task is a ‘simple’ visual stimulation, our analysis is not expected to simply detect activity in only the visual cortex, as would be produced by a more standard regression approach (<xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>), but in a more complex set of brain networks. Indeed, multiple EFD modes are produced, though we have only shown the one incorporating the primary visual cortex. As we have argued previously (<xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>), EFD analysis is more sensitive than simple regression techniques to the complex brain activation patterns predicted by neuroscience, and less sensitive to erroneous identification of noise or nonindependent modes than the independent component analysis (ICA) (<xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>). Indeed, one of our observations from both the fMRI and EEG data used in this study (<xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>) is the appearance of PFC activations associated with visual stimulation, which has been suggestive of conscious visual perception (<xref ref-type="bibr" rid="bib56">Libedinsky and Livingstone, 2011</xref>; <xref ref-type="bibr" rid="bib74">Paneri and Gregoriou, 2017</xref>). Addressing this question is beyond the scope of the current paper.</p></sec><sec id="s3-3-2"><title>Validation with simultaneous fMRI/EEG attention paradigm</title><p>Simultaneous EEG/fMRI were collected from subjects within a standard clinical 3T MRI scanner (see Attention paradigm data for details). The stimuli and paradigm are described in detail in <xref ref-type="bibr" rid="bib35">Grinband et al., 2017</xref>. Briefly, bimodal stimuli consisting of short (<inline-formula><mml:math id="inf110"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>1</mml:mn><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula>) streams of simple tones (600 and 1000 Hz) alternating at 10 Hz were delivered concurrently with phase-reversing (6 Hz) checkerboard patterns presented at fixation. Participants were instructed to selectively attend to either the visual or auditory aspect of the bimodal stimulus and respond when the stream of stimuli in the attended modality ends.</p><p>SPECTRE processing was performed in the alpha band. The appearance of visual stimuli elicited a reduction of ongoing alpha (7–14 Hz) activity (‘event-related desynchronization’ [ERD]) over occipital cortex, believed to occur when cortical regions are brought ‘online’ for information processing (<xref ref-type="bibr" rid="bib48">Klimesch, 2012</xref>). As in previous studies, e.g., <xref ref-type="bibr" rid="bib12">Foxe and Snyder, 2011</xref>, attended visual stimuli elicited increased (more negative) amplitude of the alpha ERD compared to unattended stimuli (<xref ref-type="fig" rid="fig4">Figure 4A and B</xref>). In contrast, unattended, compared to attended, visual stimuli elicited a greater reduction in ongoing spectral activity within the 5–15 Hz frequency range over bilateral middle frontal cortex (<xref ref-type="fig" rid="fig4">Figure 4C and D</xref>). We estimated the neural sources of these attention-related modulations of oscillatory activity across the 8–12 Hz frequency band, which encompassed both the occipital and frontal activities (<xref ref-type="fig" rid="fig4">Figure 4E</xref>). Their anatomical localization was remarkably consistent across several individuals (<xref ref-type="fig" rid="fig5">Figure 5</xref>).</p><fig id="fig4" position="float"><label>Figure 4.</label><caption><title>Validation of SPECTRE against standard EEG spatial and frequency mapping and simultaneously acquired fMRI.</title><p>(<bold>A</bold>) Baseline-corrected electroencephalography (EEG) activity from a single subject elicited by unattended (top) and attended (bottom) visual stimuli averaged across the cluster of three occipital electrode sites (PO7, PO3, O1) denoted in <bold>B</bold> by white circles. Over the broad alpha frequency band (7–16 Hz), there was a reduction in total power (from the pre- to poststimulus latency interval) which was greater for attended, compared to unattended, visual stimuli. (B) Scalp topography of the mean difference in oscillatory (8–12 Hz) activity for unattended minus attended visual stimuli across the 0–2000 ms latency interval. As expected, attention modulated (reduced) the power of these oscillations over the visual cortex. (<bold>C</bold>) As in A for three frontal electrode sites (F6, F8, AF6) denoted in D by black circles. In contrast to visual cortex, in bilateral frontal regions, unattended visual stimuli elicited a greater reduction of oscillatory activity between 5 and 10 Hz (theta-alpha frequency). (<bold>D</bold>) Frontal view of the unattended minus attended difference topography between 0 and 2000 ms in the 8–12 Hz frequency band. (<bold>E</bold>) SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) Power estimates derived from mean (baseline-corrected) oscillatory power between 0 and 2000 ms and across 8–12 Hz for the same subject shown in panels <bold>A–D</bold>, superimposed on the MRI Montreal Neurological Institute (MNI) template brain. Hot colors (yellow to red) indicate greater attention-related modulation (reduction) of activity, and the inverse for warm colors (light to dark blue). (<bold>F</bold>) Blood oxygenation level-dependent (BOLD) signal (beta parameter estimate) contrasting activation to visual stimuli when attended vs activation to the same stimulus when unattended. Attention-related enhancement of the BOLD signal in visual cortex mirrors the reduction in alpha power obtained in the same subject using EEG.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig4-v1.tif"/></fig><fig id="fig5" position="float"><label>Figure 5.</label><caption><title>Estimated localization of neural activity for 8–12 Hz oscillatory activity (unattended minus attended; 0–2000 ms) for five participants (S1-S5).</title><p>Colors are as in <xref ref-type="fig" rid="fig4">Figure 4E</xref>. A prominent bilateral occipital source associated with increased attentional modulation is observable in all participants. A bilateral source localized in the middle frontal cortex and indicating less modulation is also consistently observed across participants. Note that these are difference maps from the weighted sum over all estimated amplitudes of the activation modes, so that the intensities are scaled between –1 and 1, and thresheld at absolute value 0.6.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig5-v1.tif"/></fig><p>A direct comparison of the activation maps derived from both fMRI and EEG using SPECTRE for a single study within two subjects (i.e. without any average over studies or subjects) is shown in <xref ref-type="fig" rid="fig6">Figure 6</xref>. The comparison is made by choosing specific regions of interest defined in the MNI atlas (occipital cortex and cerebellum) and correlating the activation maps derived from EFD for fMRI and SPECTRE from EEG. Comparison of the similarity of activated regions in individual subjects is generally a nontrivial problem. This is particularly true in the current case where the spatial distortions in fMRI (and lack of them in SPECTRE) make measures such as mean-squared error difficult to interpret. Therefore, the computation of the correlation coefficient over a predefined atlas ROI is a reasonable conservative measure of statistical significance.</p><fig id="fig6" position="float"><label>Figure 6.</label><caption><title>Direct comparison of activation maps from two participants (Subject A, left; Subject B, right) in the bimodal (auditory + visual) stimulation paradigm described for <xref ref-type="fig" rid="fig3">Figures 3</xref> and <xref ref-type="fig" rid="fig4">4</xref>.</title><p>In each subject, two brain regions - the cerebellum and the occipital pole (top and bottom rows, respectively) - were delineated based on the MRI Montreal Neurological Institute (MNI) atlas, and entropy field decomposition (EFD) activation maps were correlated across these entire regions. Correlation coefficients were as follows: for Subject A, cerebellum=0.74, occipital pole=0.70; for Subject B, cerebellum=0.70, occipital pole=0.84. Correlations were computed only for regions exhibiting activation levels above 0.1. In contrast to functional MRI (fMRI), the SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) technique identified robust activations in bilateral middle and inferior frontal cortex (indicated by yellow arrows) and middle temporal cortex (red arrows). It also discerned activations along the superior temporal cortex, including areas encompassing the primary auditory cortex (green arrows).</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig6-v1.tif"/></fig><p>As an example of the type of whole-brain electric field activation maps that are possible with SPECTRE is shown in the montage of orthogonal slices from a 2 mm reconstruction, <xref ref-type="fig" rid="fig7">Figure 7</xref>, from one of the subjects of this same attention study.</p><fig id="fig7" position="float"><label>Figure 7.</label><caption><title>Orthogonal slices from whole-brain electric field activation maps from a 2 mm SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) reconstruction of electroencephalography (EEG) data from a single subject in the attention study.</title><p>The colors are the weighted sum over all estimated amplitudes of the activation modes.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig7-v1.tif"/></fig></sec><sec id="s3-3-3"><title>Statistical significance of simultaneous EEG/fMRI results</title><p>Direct comparison of activation maps from two participants in the bimodal (auditory + visual) stimulation paradigm described for <xref ref-type="fig" rid="fig3">Figures 3</xref> and <xref ref-type="fig" rid="fig4">4</xref> is shown in <xref ref-type="fig" rid="fig6">Figure 6</xref>. In each subject, two brain regions - the cerebellum and the occipital pole (top and bottom rows, respectively) - were delineated based on the MNI atlas, and EFD activation maps were correlated across these entire regions. Correlation coefficients were as follows: for Subject A, cerebellum = 0.74, occipital pole = 0.70; for Subject B, cerebellum = 0.70, occipital pole = 0.84. Correlations were computed only for regions exhibiting activation levels above 0.1. In contrast to fMRI, the SPECTRE technique identified robust activations in bilateral middle and inferior frontal cortex (indicated by yellow arrows) and middle temporal cortex (red arrows). It also discerned activations along the superior temporal cortex, including areas encompassing the primary auditory cortex (green arrows). We emphasize that the difference in activation maps provided by SPECTRE and fMRI is not expected to be identical, as EEG and fMRI are not measuring the same physical quantities. Indeed, fMRI is measuring rather poor proxies of the brain electrical fields. Therefore, it would be remarkable if these two methods did not have significant differences. <xref ref-type="fig" rid="fig4">Figure 4</xref> provides the best example, where our EEG method showing deactivation (blue in E) is consistent with what can be considered a gold standard for EEG - the direct surface recordings near the scalp where the deactivation in the frontal lobes (C, D in blue) corresponds. It should also be noted that this is not simply a visual task, but an attention task, for which these activation patterns are well known, and thus provides yet another form of validation.</p><p>Therefore, the high correlation coefficients between the maps, <xref ref-type="fig" rid="fig6">Figure 6</xref>, are therefore indicative of the consistency between the fMRI and SPECTRE results in the ROI. Note that this does <italic>not</italic> imply similarity over the entire region shown. Indeed, the SPECTRE results show enhanced sensitivity to activation in regions not seen in the fMRI.</p></sec><sec id="s3-3-4"><title>Validation through iEEG recordings: surface electrode vs complete electrode array</title><p>While comparison with fMRI can validate the correct detection of activated brain regions and networks, as shown in the previous section, it cannot inform the question of correct detection of electrical signals, since fMRI is based on a completely different contrast mechanism related to blood oxygenation. A direct validation of SPECTRE’s ability to faithfully reconstruct deep EM activity is, to our knowledge, only achievable with one type of data: iEEG recordings such as those used in medically refractory epilepsy patients for seizure onset localization where the electrodes are known to be adjacent to the site of electrical activity (<xref ref-type="bibr" rid="bib78">Ramantani et al., 2016</xref>; <xref ref-type="bibr" rid="bib92">van Mierlo et al., 2020</xref>). We analyzed an iEEG recording of a seizure localized in the left medial temporal region acquired at Northwell Health, NY. All implanted electrodes are shown in <xref ref-type="fig" rid="fig8">Figure 8</xref> (top row) with each yellow dot depicting one recording contact. Comparing the SPECTRE reconstruction using all of the sensor data with one using only a subset of the data comprised of only the sensors on the surface of the brain (red dots in <xref ref-type="fig" rid="fig8">Figure 8</xref>, top row) allows the quantitative assessment of how closely the results from a set of surface electrodes correspond to those produced by intracranial measurements recording signal very close to the sources. The results are shown for the alpha frequency band in <xref ref-type="fig" rid="fig8">Figure 8</xref> and reveal a very close correspondence between the SPECTRE mode reconstruction. Results for Subjects 2–4 are shown in <xref ref-type="fig" rid="app2fig1">Appendix 2—figures 1</xref>–<xref ref-type="fig" rid="app2fig3">3</xref> and show similar agreement.</p><fig id="fig8" position="float"><label>Figure 8.</label><caption><title>(Top row) Full array of intracranial electroencephalography (EEG) contacts from a recording in a medically refractory epilepsy patient (yellow dots).</title><p>Red dots indicate a subset of surface-only electrodes to mimic a standard noninvasive (i.e. extracranial) EEG study. SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) alpha band reconstruction from (<bold>A</bold>) full array of intracranial EEG sensors from an epilepsy study (yellow dots) in top row and (<bold>B</bold>) from subset of surface electrodes (red dots) in top figure. (<bold>C</bold>) Overlay of (<bold>A</bold>) and (<bold>B</bold>) validating that the surface-based is correctly reconstructing the local electric field potential detected by the intracranial electrodes.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig8-v1.tif"/></fig></sec><sec id="s3-3-5"><title>Validation through iEEG recordings: comparison with simulation</title><p>A traditional approach for validating estimation methods is to compare results against a ‘ground truth’ derived from numerically simulated signals. This is a standard procedure in source reconstruction methods, where simulated point dipole sources are embedded within a brain model (e.g. a high-resolution MRI scan). The forward problem is then solved to generate the dipole fields at the brain surface, and the resulting simulated signals are used to estimate the original source locations. While this approach works well for dipole-based models of brain activity, it is not directly applicable to the more realistic WETCOW model of brain waves.</p><p>However, an alternative validation strategy is possible by comparing SPECTRE data to the most reliable ground-truth data available: iEEG. One of the most striking predictions of the WETCOW theory is the presence of coherent, sustained cortical wave loops - a phenomenon demonstrated through numerical simulations in a realistic brain model derived from HRA data (Figure 10, top). This prediction provides a natural benchmark for validating the SPECTRE method.</p><p>An application of SPECTRE to a WETCOW analysis of iEEG recording of several epileptic seizure onsets in insular posterior opercular and in hippocampus areas that provides our first experimental evidence of the existence of our hypothesized cortical loops is shown in Figure 10 (bottom right). SPECTRE reconstruction confirms the existence of cortical wave loops in Figure 10 (bottom right), consistent with the numerical simulations shown in Figure 10 (top). The intracranial leads are shown in Figure 10 (bottom left).</p></sec><sec id="s3-3-6"><title>Statistical significance of iEEG results</title><p>A deep-surface-full comparison of modes for seizures datasets was run for all 5 iEEG subjects with 44 events total. The correlation plot shown in <xref ref-type="fig" rid="fig9">Figure 9</xref> demonstrates that the correlations are very high. We ran three t-tests on Fisher’s Z-transformed correlation values (full-deep/full-surface, full-deep/deep-surface, full-surface/deep-surface), and the t-tests show that full-deep/full-surface correlations are very similar (null hypothesis is not rejected, <inline-formula><mml:math id="inf111"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.2368</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf112"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>t</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>43</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>1.19</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf113"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>&gt;</mml:mo><mml:mn>0.001</mml:mn></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, 95% CI [–0.0370, 0.1457], SD = 0.3004), but the full-deep/deep-surface and full-surface/deep-surface t-tests show statistically significant differences (<inline-formula><mml:math id="inf114"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mi>e</mml:mi><mml:mspace width="negativethinmathspace"/><mml:mo>−</mml:mo><mml:mspace width="negativethinmathspace"/><mml:mn>8</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf115"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>t</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>43</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>7.05</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf116"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>&gt;</mml:mo><mml:mn>0.001</mml:mn></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, 95% CI [0.1827, 0.3291], SD = 0.2408, and <inline-formula><mml:math id="inf117"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>8</mml:mn><mml:mi>e</mml:mi><mml:mspace width="negativethinmathspace"/><mml:mo>−</mml:mo><mml:mspace width="negativethinmathspace"/><mml:mn>6</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf118"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>t</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>43</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>5.06</mml:mn></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf119"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>&gt;</mml:mo><mml:mn>0.001</mml:mn></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, 95% CI [0.1213, 0.2818], SD = 0.2640). These results support the claim that the SPECTRE reconstruction of the spatial distribution of deep electrical activity from the surface measurements accurately reflects the true spatial localization of the deep electric fields.</p><fig id="fig9" position="float"><label>Figure 9.</label><caption><title>Statistical comparison of full vs surface intracranial electroencephalography (EEG) estimates.</title><p>The horizontal axis represents the correlation coefficients between the estimates obtained from the full set of electrodes and the deep electrodes (adjacent to the source). The vertical axis represents the correlation coefficients between the full set of electrodes and just the surface electrodes, as would be collected in a standard (extracranial) EEG experiment. The results are highly correlated and thus support the claim that the SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) reconstruction of the spatial distribution of deep electrical activity from the surface measurements accurately reflects the true spatial localization of the deep electric fields.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig9-v1.tif"/></fig></sec><sec id="s3-3-7"><title>Investigation of the ‘reward circuit’</title><p>Having validated the SPECTRE method directly with simultaneous fMRI/EEG, iEEG, and an attention paradigm, we investigated the ability of SPECTRE to faithfully reconstruct the well-known neural ‘reward circuit’ that is one of the most important in understanding human cognition, emotion, and behavior (<xref ref-type="bibr" rid="bib84">Schultz, 2015</xref>; <xref ref-type="bibr" rid="bib37">Haber, 2017</xref>; <xref ref-type="bibr" rid="bib2">Banich and Floresco, 2019</xref>) and is of great clinical significance in the understanding of addiction (<xref ref-type="bibr" rid="bib49">Koob and Roberts, 1999</xref>; <xref ref-type="bibr" rid="bib31">Gardner, 2011</xref>), mood disorders (<xref ref-type="bibr" rid="bib67">Naranjo et al., 2001</xref>; <xref ref-type="bibr" rid="bib81">Russo and Nestler, 2013</xref>), and a variety of other conditions (<xref ref-type="bibr" rid="bib55">Lewis et al., 2021</xref>; <xref ref-type="fig" rid="fig10">Figure 10</xref>).</p><fig id="fig10" position="float"><label>Figure 10.</label><caption><title>Validation of weakly evanescent transverse cortical waves (WETCOW) model with intracranial measurements and SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) reconstruction.</title><p>(Top) Examples of wave trajectories obtained in simulation of wave propagation in real data cortical fold tissue model. Panels (<bold>a, c</bold>) show the complete trajectories, and panels (<bold>d, e</bold>) show the emergent stable wave loops. The spherical cortex shell model is used for panels (a) and (d), and the cortical fold model is used for panels (<bold>b</bold>), (<bold>c</bold>), (<bold>e</bold>), and (<bold>f</bold>) (reprinted from <xref ref-type="bibr" rid="bib25">Galinsky and Frank, 2020a</xref>, 2020 Massachusetts Institute of Technology. All rights reserved). The colors encode wave propagation: red - left/right, green - anterior/posterior and blue - dorsal/ventral. (Bottom) (left) EEG contacts and (right) detected WETCOW cortical loops from intracranial electroencephalography (iEEG) recordings of epileptic seizure onset in insular posterior opercular area.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig10-v1.tif"/><permissions><copyright-statement>© 2020, Massachusetts Institute of Technology</copyright-statement><copyright-year>2020</copyright-year><copyright-holder>Massachusetts Institute of Technology</copyright-holder><license><license-p>The spherical cortex shell model is used for panels (a) and (d) and the cortical fold model is used for panels (b),(c),(e), and (f) (reprinted from <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.1162/jocn_a_01611">https://doi.org/10.1162/jocn_a_01611</ext-link> with permission). It is not covered by the CC-BY 4.0 licence and further reproduction of this panel would need permission from the copyright holder.</license-p></license></permissions></fig><p>We demonstrate that SPECTRE using standard EEG data can accurately map human reward pathways akin to results previously only seen via fMRI. Indeed, fMRI results have highlighted a reward system within the brain that includes midbrain dopamine-producing regions (the substantia nigra pars compacta, the ventral tegmental area), the ventral striatum, and multiple regions within the human PFC (<xref ref-type="bibr" rid="bib62">McClure et al., 2004</xref>). Other research using fMRI and source localization of EEG data suggests that the anterior cingulate cortex also plays a key role in reward processing (<xref ref-type="bibr" rid="bib43">Holroyd and Coles, 2008</xref>). In a unifying theory, it has been proposed that all the aforementioned regions work together as a neural system for the optimization of reward-driven behavioral change (i.e. reinforcement learning; <xref ref-type="bibr" rid="bib42">Holroyd and Coles, 2002</xref>).</p><p>This is of particular clinical significance because addictive behaviors have long been known to be subserved by specific brain regions operating in concert as the reward circuit (<xref ref-type="bibr" rid="bib50">Koob and Volkow, 2010</xref>; <xref ref-type="bibr" rid="bib53">Leshner, 1997</xref>; <xref ref-type="bibr" rid="bib88">Tapert et al., 2003</xref>; <xref ref-type="bibr" rid="bib91">Tyree and de Lecea, 2017</xref>; <xref ref-type="bibr" rid="bib47">Kallen et al., 2023</xref>). The reward circuit is involved in processing rewarding stimuli of any sort, and, in drug addiction, substances of abuse (e.g. amphetamine) increase dopamine release in a protracted and less regulated manner as compared to typical stimuli, resulting in synaptic plasticity and altered functioning of this circuit over time.</p><p>For our analysis, we used a large gambling task dataset that includes 500 participants available for download from <ext-link ext-link-type="uri" xlink:href="https://osf.io/65x4v/">https://osf.io/65x4v/</ext-link>. The details of the dataset and an extensive analysis using standard EEG analysis methodologies are presented in <xref ref-type="bibr" rid="bib95">Williams et al., 2021</xref>. The relevant information from this study is presented in Appendix 2: Reward Circuit Data.</p><p>For each subject trial <inline-formula><mml:math id="inf120"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>10</mml:mn></mml:mstyle></mml:math></inline-formula> power modes were calculated and summed to form the single space-time SPECTRE mode (see Mode reconstruction). <xref ref-type="fig" rid="fig11">Figure 11</xref> shows three orthogonal slices of the difference in EFD power summed over all modes between conditions, averaged over all subjects. Activation in key regions of the reward circuit, including the frontal lobes, anterior cingulate gyrus, accumbens, and amygdala, is clearly evident. Strong negative activation (i.e. deactivation) is evident in several structures, including the supplementary motor cortex and the parietal operculum cortex. Activation is also apparent in the lingual gyrus and around the calcarine fissure and, as expected, in bilateral subcortical structures.</p><fig id="fig11" position="float"><label>Figure 11.</label><caption><title>Gambling task electroencephalography (EEG) from 500 subject cohort.</title><p>Alpha power of the weighted sum over the first <italic>n</italic> = 10 SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) modes. Activation in key regions of the reward circuit, including the frontal lobes, paracingulate gyrus, accumbens, and amygdala, is clearly evident. Negative activation (i.e. deactivation) is evident in the supplementary motor cortex and the left temporal-parietal regions.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig11-v1.tif"/></fig><p>In <xref ref-type="fig" rid="fig12">Figure 12</xref> is shown the power per brain regions as defined by the Harvard-Oxford 2 mm cortical (top) and subcortical (bottom) atlases. In the cortical regions (top), strong activation is apparent in the frontal cortex (medial, orbital, operculum), cingulate gyrus, paracingulate gyrus, and insular cortex. Activation in the accumbens is apparent from the data in the subcortical atlas <xref ref-type="fig" rid="fig12">Figure 12</xref> (bottom). These activated regions are consistent with the known elements of the human brain reward circuitry.</p><fig id="fig12" position="float"><label>Figure 12.</label><caption><title>SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) power per brain region in the Harvard-Oxford 2 mm cortical (top) and subcortical (bottom) atlases.</title><p>Colormap is from hot/yellow (activated) to blue (deactivated). Activation in key regions of the reward circuit, including the frontal lobes, paracingulate gyrus, subcallosal cortex/nucleus accumbens, and amygdala, is clearly evident. Negative activation (i.e. deactivation) is evident in the supplementary motor area, posterior cingulate, and thalamus. Activation of the important reward element accumbens is evident in the bottom plot. Also of note is the relatively similar activation in the bilateral subcortical elements.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig12-v1.tif"/></fig><p>Images of statistical significance (<inline-formula><mml:math id="inf121"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn>0.0001</mml:mn></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) are shown in <xref ref-type="fig" rid="fig13">Figure 13</xref>. It should be noted that the determination of statistical significance with SPECTRE by ‘traditional’ methods is potentially misleading as they will tend to <italic>underestimate</italic> activation significance. The estimation of the modes in SPECTRE employs EFD (<xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>; <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>), which is a probabilistic formulation that <italic>by construction</italic> incorporates space-time neighborhood connectivity so that spatially and temporally coherent patterns (‘clusters’) are more probable. Traditional methods have the option for ‘clustering’ regions of activation post hoc into their general class of techniques called ‘bootstrapping’ or ‘permutation inference’. Cluster post-detection of an activation is incommensurate with our view of the estimation process, wherein the clustering in space-time is a key component indicator of high-probability regions of space-time. Spatially and temporally coherent patterns may be of low amplitude with apparent low significance by traditional means, but those intensities are within a mode that contains very high significance in cortical regions (e.g. <xref ref-type="fig" rid="fig13">Figure 13</xref>), which is predicted by the WETCOW model.</p><fig id="fig13" position="float"><label>Figure 13.</label><caption><title>Statistical significance.</title><p>t-Statistic between the SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) power modes pre- and poststimulus reward experiment. Calculations were performed using the standard AFNI 3dttest++ algorithm. Yellow/red color reflects positive changes, blue color reflects negative changes. Significance threshold was p=10<sup>−8</sup>, indicating strong statistical significance.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-fig13-v1.tif"/></fig></sec><sec id="s3-3-8"><title>Statistical significance of reward circuit results</title><p>Mass univariate voxel-wise statistical analysis across the whole brain was performed using AFNI 3dttest++. The first level fixed effects were analyzed to produce contrast estimates computing the mean activation for each condition (the SPECTRE power modes obtained for pre- and poststimulus reward experiment). Statistical significance (t-statistic) between the SPECTRE power modes pre- and poststimulus reward experiment. Calculations of statistical significance (two-sample t-statistic) between the SPECTRE power modes pre- and poststimulus reward experiment were performed using the standard AFNI 3dttest++ algorithm. Significance threshold was <inline-formula><mml:math id="inf122"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mi>e</mml:mi><mml:mspace width="negativethinmathspace"/><mml:mo>−</mml:mo><mml:mspace width="negativethinmathspace"/><mml:mn>8</mml:mn></mml:mstyle></mml:math></inline-formula>, indicating strong statistical significance. The permutation/randomization multiple comparisons correction method was used to control the family-wise error rate and false discovery rate with AFNI’s 3dttest++ cluster-level thresholding through the -ClustSim option of the AFNI 3dttest++ algorithm. Images of statistical significance (<inline-formula><mml:math id="inf123"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn>0.0001</mml:mn></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) are shown in <xref ref-type="fig" rid="fig13">Figure 13</xref>. These results support the claim that SPECTRE can reliably reconstruct whole-brain electric field activity.</p></sec><sec id="s3-3-9"><title>Comparison with state-of-the-art source localization methods</title><p>There is a long history of attempts to spatially localize EEG activity, and these are generally called ‘source localization’ or ‘source reconstruction’ methods (<xref ref-type="bibr" rid="bib75">Pascual-Marqui et al., 1994</xref>; <xref ref-type="bibr" rid="bib39">Hallez et al., 2005</xref>; <xref ref-type="bibr" rid="bib40">Hallez et al., 2007</xref>; <xref ref-type="bibr" rid="bib7">Dattola et al., 2020</xref>). These methods are fundamentally different from the SPECTRE approach as they are solving a different problem than SPECTRE (as described in A new physical theory of brain waves) that involves numerous stringent assumptions about brain electrical activity such as a fixed set of static dipole sources, an idealized geometric model of the head reduced to a few (typically three) shells, that spatially close points are more likely synchronized and the smoothness of the solution (see <xref ref-type="bibr" rid="bib89">Taulu and Larson, 2021</xref>, and references therein).</p><p>These methods all implicitly assume the ‘quasi-static’ approximation to the EM field equation, which entails ignoring the time-dependent terms in Maxwell’s equations, which are dependent on tissue conductivity properties which are themselves frequency dependent. The resulting solutions are therefore static, have no frequency dependence, and are insensitive to the detailed spatially variable electrical properties of the tissues. However, as discussed in detail in the development of the WETCOW model (<xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>; <xref ref-type="bibr" rid="bib27">Galinsky and Frank, 2021</xref>), these assumptions are incompatible with the basic physics of brain electrical activity. The SPECTRE approach is to employ the WETCOW model and solve the actual physical problem of the complete Maxwell’s equations in an inhomogeneous and anisotropic medium. It is specifically these dependencies that give rise to the previously undiscovered WETCOW waves that propagate preferentially along the gradients of local tissue inhomogeneity and anisotropy and thus propagate preferentially <italic>perpendicular</italic> to neuronal pathways. The WETCOW theory provides a comprehensive framework for characterizing the propagation of EM fields through the complex brain tissue microstructure and larger-scale morphology (e.g. cortical folding) and provides the dynamic solution to the electric potential field necessary to solve the EEG inverse problem.</p><p>The problem of spatially localizing the EEG signal involves estimating the most probable distribution of electric field amplitudes given an array of sensors. This is essentially a problem of correctly modeling the physics of how EM waves propagate through the complex environment of the convoluted brain tissue morphology and the anisotropic and inhomogeneous nature of brain tissue. The current state-of-the-art approach to this problem, called ‘source localization’, such as <italic>low-resolution electromagnetic tomography</italic> or LORETA algorithm with its many variations (<xref ref-type="bibr" rid="bib75">Pascual-Marqui et al., 1994</xref>; <xref ref-type="bibr" rid="bib39">Hallez et al., 2005</xref>; <xref ref-type="bibr" rid="bib40">Hallez et al., 2007</xref>; <xref ref-type="bibr" rid="bib7">Dattola et al., 2020</xref>), also called ‘EEG source imaging’ (<xref ref-type="bibr" rid="bib63">Michel et al., 2004</xref>; <xref ref-type="bibr" rid="bib72">Ojeda et al., 2021</xref>), involves using a predefined brain atlas, arbitrarily placing dipole sources on the surface, and calculating the contribution from these sources. Some methods propose using fMRI as a prior, which has the disadvantage of requiring fMRI acquisitions (<xref ref-type="bibr" rid="bib80">Rosa et al., 2010</xref>; <xref ref-type="bibr" rid="bib85">Schultze-Kraft et al., 2011</xref>; <xref ref-type="bibr" rid="bib46">Jorge et al., 2014</xref>; <xref ref-type="bibr" rid="bib1">Abreu et al., 2022</xref>). The current source localization methods are based on a static model for the electric field caused by a fixed set of predefined dipole sources (see <xref ref-type="bibr" rid="bib64">Michel and Brunet, 2019</xref>, for a review of current methods). This model is inherently limited because in reality the brain’s electrical field variations are time dependent and generated by an essentially continuous distribution of sources through the entire brain. This description is the essence of the WETCOW theory (<xref ref-type="bibr" rid="bib26">Galinsky and Frank, 2020b</xref>; <xref ref-type="bibr" rid="bib27">Galinsky and Frank, 2021</xref>), which describes how highly coherent localized electric field phenomena, such as cortical wave loops and synchronized spiking, are produced by the complex nonlinear interactions of waves across multiple spatial and temporal scales.</p><p>The theoretical discussion above in Maxwell’s equations in the brain clarifies that the problem being solved by SPECTRE is the inversion of a dynamical wave equation model in contrast to the solution of Poisson’s equation for static sources being solved by traditional ‘source localization’ methods. Therefore, it makes little sense to compare the two methods, as they are attempting to solve two completely different problems. However, it perhaps serves some purpose to illustrate with a specific practical example a most basic computational problem encountered if one tries to even attempt a ‘source localization’ solution with the basis state even remotely resembling the setup used in SPECTRE.</p><p>In a typical application of the SPECTRE method, we use an MNI volumetric grid with 2 mm (902,629 voxels), 1 mm (7,221,032 voxels), or 0.73 mm (11,393,280 voxels). All voxels in our models are considered sites of EM activity consistent with the local intravoxel tissue characteristics (via <xref ref-type="disp-formula" rid="equ20">Equation 13</xref>) rather than any assumed dipolar form used in source localization methods. This setup is facilitated by the pseudo-spectral computational approach used in SPECTRE detailed above in Numerical implementation. Our highest resolution (0.73 mm) SPECTRE processing can be completed on a modern workstation using 16–20 Gb of memory in a matter of minutes.</p><p>For comparison with a current state-of-the-art source localization method, we downloaded the currently available LoretaKey1 software (<xref ref-type="bibr" rid="bib7">Dattola et al., 2020</xref>), which uses as a default a set of 6239 fixed dipoles. In order to make a fair comparison, we tried to use LoretaKey1 with a number of dipoles comparable to the number of voxels we use for our lower resolution (<inline-formula><mml:math id="inf124"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>2</mml:mn><mml:mi>m</mml:mi><mml:mi>m</mml:mi></mml:mstyle></mml:math></inline-formula> voxel) reconstruction in this paper. We began with the equivalent 902,629 voxels used by SPECTRE in the <inline-formula><mml:math id="inf125"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>2</mml:mn><mml:mi>m</mml:mi><mml:mi>m</mml:mi></mml:mstyle></mml:math></inline-formula> reconstruction, but found that LoretaKey1 is not able to handle this size because of memory limitations (i.e. ‘out-of-memory’ crashes). We subsequently scaled down the number of dipoles by factors of 2, 4, 10, and 20 times. Only with around 45K dipoles were we able to make Loreta run. It ran for approximately 24 hr, but then again crashed due to out-of-memory problems. And it should be kept in mind that this is in the absence of even any attempt by Loreta to provide a solution to a time-dependent wave equation. On the contrary, our processing with 2 mm requires around 650 Mb of memory and takes only a matter of minutes to complete. At this point, it was decided that it was not possible for Loreta to provide a result that would usefully inform the efficacy of the SPECTRE method.</p></sec></sec></sec><sec id="s4" sec-type="discussion"><title>Discussion</title><sec id="s4-1"><title>Neuroimaging and brain activity models</title><p>The ultimate goal of functional neuroimaging is to noninvasively detect and quantify the spatial and temporal variations in brain activity in terms of functional modes or ‘networks’. This requires the development of models for brain activity for the quantities being measured by the imaging modality and a reconstruction method to estimate the parameters of the physical model from that modality’s data.</p><p>The two methodologies that have emerged as the modalities of choice, fMRI and EEG, offer an interesting perspective on this general problem. The recognized importance of spatially localizing brain activity led to the development of fMRI in order to leverage the ability of MRI to spatially localize anatomical regions of the brain. The price paid is that the brain activity measured was constrained to be related to the physical effects that MRI was sensitive to, which turned out to be the local magnetic field perturbations produced by the susceptibility variations due to the changes in the oxygenation state of hemoglobin (<xref ref-type="bibr" rid="bib71">Ogawa et al., 1990</xref>). The actual spatiotemporal effects measured in an fMRI experiment are a complicated combination of this effect filtered through the simultaneous influences of metabolic, blood flow, and biomechanical factors (<xref ref-type="bibr" rid="bib5">Buxton and Frank, 1997</xref>). The connection of the fMRI to brain electrical activity is therefore quite indirect.</p><p>The problem faced by EEG is, in some sense, the opposite of fMRI. It directly measures the electrical activity of the brain, but does so using only measurements made by an array of electrodes placed on the surface of the head. There are no direct spatial localization capabilities with EEG. It is important to clarify what is meant by that statement. The ability of MRI to spatially localize signals from the brain is based on a physical model of how the signal is related to the location. In essence, this boils down to the Larmor expression <inline-formula><mml:math id="inf126"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ω</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mi>γ</mml:mi><mml:mi>B</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula>, whose very simplicity belies the extraordinary history of quantum mechanics. MRI leverages this expression with an equally impressive history of engineering physics and computational science to produce modern scanners and sophisticated acquisition and analysis methods for reconstructing volumetric data. With this viewpoint, the limitations of EEG can be seen as the absence of an appropriate physical model for the generation and propagation of brain electrical signals on which to base a reconstruction, or ‘inversion’, to produce images. Previous models have invoked a ‘quasi-static approximation’ (<xref ref-type="bibr" rid="bib70">Nunez et al., 1997</xref>) that precludes the existence of a more realistic dynamical brain wave model and limits what information can be extracted from EEG data. Our recently developed WETCOW model of brain electrodynamics derived from first principles revealed the existence of measurable brain waves that can permeate throughout the entire brain volume, not just along neuronal pathways. The model depends on the detailed morphology and tissue composition of an individual’s brain. The SPECTRE method then leveraged this theory to develop a general method for reconstructing the modes of spatiotemporal brain electrical activity using a variety of additional estimation tools we have developed and along with tissue and morphology information provided by high-resolution MRI anatomical data. The result is a practical, numerically efficient, subject-specific method for directly reconstructing the time-dependent electrical activity throughout the entire brain volume directly from EEG measurements acquired by standard extant EEG systems.</p></sec><sec id="s4-2"><title>Comparison with fMRI</title><p>fMRI has become the de facto neuroimaging method for spatial and temporal localization of brain activity. The contrast mechanism that forms the basis of fMRI is the blood oxygenation level-dependent (BOLD) variations in the magnetic state of hemoglobin and its influence on the local MRI signal as a function of the local metabolism and hemodynamics (<xref ref-type="bibr" rid="bib5">Buxton and Frank, 1997</xref>). Consequently, the spatial and temporal characteristics of the fMRI signal are related to blood flow and metabolic dynamics, rather than direct measures of electrical activity. In particular, the signal variations will be spatially localized in vascular pathways, and the temporal variations, being related to blood flow effects, are very slow compared to electrical activity. In short, the spatial-temporal dynamics measured by fMRI need not (and, in fact, will not) correspond exactly to the spatial-temporal patterns of electrical activity. Numerous experimental realities also make fMRI problematic as a gold standard. In particular, fMRI is facilitated by enhancing the sensitivity of MRI to the BOLD contrast mechanism, which requires enhancing the sensitivity to local magnetic field variations through the use of <inline-formula><mml:math id="inf127"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>T</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>2</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>-weighted pulse sequences (<xref ref-type="bibr" rid="bib45">Jezzard, 2012</xref>), which lead to increased geometric distortions, compromising not only spatial resolution but confounding the spatial localization of the activity in a complex, nonlinear fashion. Gross distortions can lead to significantly reduced signal-to-noise (SNR) and even completely unrecoverable signal loss, particularly in regions near air/tissue interfaces, such as in the PFC. Moreover, the complex nonlinear interactions between the magnetic fields and physiological variations such as respiration and cardiac pulsations produce a variety of complex spatiotemporal signal distortions (<xref ref-type="bibr" rid="bib13">Frank et al., 2001</xref>). While mitigating these artifacts is an area of very active research, they remain a serious problem for fMRI.</p><p>Nevertheless, certain very simple task-based fMRI experimental paradigms, such as finger tapping or rapidly flickering checkerboard stimuli, repeated at periodic on/off intervals, have been established as experiments that produce repeatable robust activations in known brain networks and are commonly used as basic testbeds for assessment of analysis algorithms. When combined with simultaneous EEG acquisition, such experiments provide two different types of data that can be compared as a form of validation, with the proviso that these two methods are imaging different physical quantities.</p><p>While the advantages of SPECTRE over fMRI in temporal resolution are clear, what is perhaps surprising is its advantages in <italic>spatial</italic> resolution. The inverse solution that estimates the electric field potential from the EEG data is based on a physical model of wave propagation from tissues whose composition and geometry are derived from high-resolution anatomical MRI data. The final resolution of the SPECTRE electric field modes is that of the anatomical data, which is typically significantly higher (<inline-formula><mml:math id="inf128"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>.5</mml:mn><mml:mo>−</mml:mo><mml:mn>1</mml:mn><mml:mi>m</mml:mi><mml:mi>m</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>) than the resolution of an fMRI image (<inline-formula><mml:math id="inf129"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>2</mml:mn><mml:mi>m</mml:mi><mml:mi>m</mml:mi></mml:mstyle></mml:math></inline-formula>). (There are, of course, limitations depending on the number of electrodes in the EEG system.)</p><p>But it is also important to recognize that the question of resolution in fMRI is not just a question of the prescribed image resolution of the acquisition. The BOLD physical mechanism that generates the fMRI contrast is a subtle variation in the magnetic susceptibility, which causes variations in the local magnetic field, that in turn alters the local signal. fMRI acquisitions are specifically designed to accentuate this effect in order to make it observable. Unfortunately, local magnetic field variations unrelated to the BOLD mechanism, in particular strong magnetic susceptibility variations due to air/tissue boundaries such as those in the sinus cavities, cause severe nonlinear image distortions that effectively alter the location and shape of the affected image volume elements (voxels). This makes even the definition of ‘resolution’ problematic, as it is essentially a spatially nonlinearly varying function. Such effects are absent from EEG, which is simply a set of receiving electrodes (albeit not without its own source of artifacts) (<xref ref-type="bibr" rid="bib70">Nunez et al., 1997</xref>). The SPECTRE reconstruction uses high-resolution MRI data acquired with techniques specifically designed to be insensitive to these magnetic susceptibility distortions and thus of very high spatial fidelity.</p></sec><sec id="s4-3"><title>Advantages of SPECTRE and future work</title><p>The SPECTRE reconstruction of EEG data provides obvious significant advantages over fMRI in temporal resolution, since EEG data has very high intrinsic temporal resolution (<inline-formula><mml:math id="inf130"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>1</mml:mn><mml:mi>m</mml:mi><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula>) necessary to capture rapidly varying electric field variations. Moreover, the SPECTRE algorithm can specify what frequency ranges to interrogate, providing a highly flexible analysis framework for focused investigation of particular frequency bands of interest. On the contrary, even rapid fMRI acquisition is intrinsically limited by the temporal evolution of the contrast mechanism, the BOLD signal, which is related to blood flow and thus of quite low frequency (<inline-formula><mml:math id="inf131"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>∼</mml:mo><mml:mn>1</mml:mn><mml:mi>H</mml:mi><mml:mspace width="thinmathspace"/><mml:mi>z</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>).</p><p>In this paper, we have successfully validated the SPECTRE method using simultaneous fMRI/EEG experiments. The results not only affirmed SPECTRE’s capability to accurately reconstruct spatial distributions of neural activity from EEG data, in alignment with the concurrently acquired fMRI data, but also revealed its efficacy in identifying robust activations across subjects that were not detectable with fMRI alone. These findings underscore SPECTRE’s potential to significantly enhance the sensitivity and scope of neuroimaging analyses. Further validation was performed using iEEG measurements from an epilepsy study, with reconstruction of data from a subset of sensors on the surface of the brain shown to be consistent with the reconstruction from all the sensors, including those directly next to the activity source. The application of SPECTRE to high-resolution EEG data during a gambling task demonstrated its ability to reconstruct a well-known and important brain circuit (<xref ref-type="bibr" rid="bib73">Olds and Milner, 1954</xref>; <xref ref-type="bibr" rid="bib53">Leshner, 1997</xref>; <xref ref-type="bibr" rid="bib50">Koob and Volkow, 2010</xref>; <xref ref-type="bibr" rid="bib31">Gardner, 2011</xref>; <xref ref-type="bibr" rid="bib84">Schultz, 2015</xref>; <xref ref-type="bibr" rid="bib37">Haber, 2017</xref>; <xref ref-type="bibr" rid="bib2">Banich and Floresco, 2019</xref>) that has previously only been detected using fMRI. The analysis revealed significant differences in the brain networks in the alpha range <inline-formula><mml:math id="inf132"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>8</mml:mn><mml:mo>−</mml:mo><mml:mn>12</mml:mn><mml:mi>H</mml:mi><mml:mspace width="thinmathspace"/><mml:mi>z</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, consistent with previous spatially resolved fMRI experiments, but the analysis is easily carried out in any user-defined frequency ranges of interest (<xref ref-type="bibr" rid="bib38">Hagerty et al., 2013</xref>; <xref ref-type="bibr" rid="bib6">Cantisani et al., 2016</xref>; <xref ref-type="bibr" rid="bib86">Stavropoulos and Carver, 2018</xref>; <xref ref-type="bibr" rid="bib54">Leung and Pang, 2021</xref>), which will be the subject of future work. The SPECTRE methodology is applicable to any EEG study and thus holds promise for a wide range of ongoing studies of basic neuroscience of reward mechanisms and in clinical applications such as addiction.</p></sec><sec id="s4-4"><title>Conclusion</title><p>The implications for spatially resolved EEG are important not only from a scientific perspective, but from a practical perspective as well. fMRI is a much more involved and expensive procedure, requiring highly trained research or clinical applications specialists in specially designed facilities, and subjecting the subjects to a much more claustrophobic and restricted environment, with the safety concerns always present in MRI experiments. On the contrary, the portability, safety, and relative ease of EEG experiments, which can be carried out in a standard research or clinical office, makes it very attractive. The high spatial and temporal resolution capabilities provided by SPECTRE to standard EEG data offer the possibility of more detailed investigations of brain activity in a wide range of both basic research and clinical settings. This method also has important implications for the democratization of medicine worldwide, where there are many populations for which advanced technologies such as fMRI are prohibitive because of cost, citing issues for large specialized equipment, and lack of highly trained personnel.</p></sec><sec id="s4-5"><title>Human subjects</title><p>All participants provided informed consent approved by the University of Victoria’s Human Research Ethics Board. The iEEG data was recorded in drug-resistant epilepsy patients undergoing invasive EEG monitoring at the North Shore University Hospital (Manhasset, NY 11030, USA) for seizure onset localization. All patients provided informed written consent according to a protocol approved by the Institutional Review Board (IRB) of the Feinstein Institutes for Medical Research in accordance with the Declaration of Helsinki. All participants in the simultaneous fMRI/EEG study provided informed consent approved by the IRB of the Nathan Kline Institute for Psychiatric Research (Orangeburg, NY, USA).</p></sec><sec id="s4-6"><title>Code availability</title><p>The code supporting the findings of this study is protected by patent and university intellectual property regulations and, therefore, is not publicly available. Interested parties may contact Lawrence Frank (lfrank@ucsd.edu) to inquire about potential licensing options through UCSD.</p></sec></sec></body><back><sec sec-type="additional-information" id="s5"><title>Additional information</title><fn-group content-type="competing-interest"><title>Competing interests</title><fn fn-type="COI-statement" id="conf1"><p>No competing interests declared</p></fn></fn-group><fn-group content-type="author-contribution"><title>Author contributions</title><fn fn-type="con" id="con1"><p>Conceptualization, Resources, Software, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing – original draft, Project administration, Writing – review and editing</p></fn><fn fn-type="con" id="con2"><p>Conceptualization, Resources, Data curation, Software, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing – original draft, Project administration, Writing – review and editing</p></fn><fn fn-type="con" id="con3"><p>Resources, Data curation, Validation, Investigation, Methodology, Writing – original draft, Writing – review and editing</p></fn><fn fn-type="con" id="con4"><p>Investigation, Methodology, Writing – original draft, Writing – review and editing</p></fn><fn fn-type="con" id="con5"><p>Resources, Data curation, Validation, Investigation, Methodology, Writing – original draft, Writing – review and editing</p></fn><fn fn-type="con" id="con6"><p>Conceptualization, Resources, Data curation, Formal analysis, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing – original draft, Writing – review and editing</p></fn></fn-group><fn-group content-type="ethics-information"><title>Ethics</title><fn fn-type="other"><p>Human subjects: All participants provided informed consent approved by the University of Victoria's Human Research Ethics Board (UVic Approval Number: 16-428). The iEEG data was recorded in drug-resistant epilepsy patients undergoing invasive EEG monitoring at the North Shore University Hospital (Manhasset, NY 11030, USA) for seizure onset localization. All patients provided informed written consent according to a protocol approved by the IRB of the Feinstein Institutes for Medical Research in accordance with the Declaration of Helsinki. All participants in the simultaneous fMRI/EEG study provided informed consent approved by the Institutional Review Board (IRBNet ID #: 1698186) of the Nathan Kline Institute for Psychiatric Research (Orangeburg, NY).</p></fn></fn-group></sec><sec sec-type="supplementary-material" id="s6"><title>Additional files</title><supplementary-material id="mdar"><label>MDAR checklist</label><media xlink:href="elife-100123-mdarchecklist1-v1.pdf" mimetype="application" mime-subtype="pdf"/></supplementary-material></sec><sec sec-type="data-availability" id="s7"><title>Data availability</title><p>The simultaneous EEG/fMRI data of Figures 1 and 2 (<xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>) is publicly available at <ext-link ext-link-type="uri" xlink:href="https://fcon_1000.projects.nitrc.org/indi/retro/nat_view.html">https://fcon_1000.projects.nitrc.org/indi/retro/nat_view.html</ext-link>. The reward EEG data (<xref ref-type="bibr" rid="bib95">Williams et al., 2021</xref>) of Figures 11,12, and 13 is publicly available at <ext-link ext-link-type="uri" xlink:href="https://osf.io/65x4v/">https://osf.io/65x4v/</ext-link>. For additional access to the reward data, contact Dr. Olave Krigolson (krigolson@uvic.ca). Please submit a proposal. The data cannot be used for commercial use, otherwise there are no restrictions on its use. Commercial research on the data in not allowed because this is prohibited by ethics approval. All participants that participated in the simultaneous fMRI/EEG study (Figures 3,4,5) provided informed consent approved by the Institutional Review Board (IRB) of the Nathan Kline Institute for Psychiatric Research (Orangeburg, NY). All participants that participated in the iEEG study (Figure 8, Appendix 2—figures 1–3) provided informed consent approved by the IRB of the Feinstein Institutes. Due to the sensitive nature of neuroimaging data collected from individuals with schizophrenia and iEEG data in patients with epilepsy, and to protect participant confidentiality and comply with IRB guidelines and HIPAA regulations, these data are not publicly available. De-identified data will be made available after reasonable request to Antigona Martinez (martinez@nki.rfmh.org) for the fMRI/EEG data and to Stephan Bickel (sbickel@northwell.edu) for the iEEG data. Access upon reasonable request will be granted without restriction on researcher affiliation or location, but use of the data for commercial purposes is not permitted. The code supporting the findings of this study is protected by patent and university intellectual property regulations and, therefore, is not publicly available. Interested parties may contact Lawrence Frank (lfrank@ucsd.edu) to inquire about potential licensing options through UCSD.</p><p>The following previously published datasets were used:</p><p><element-citation publication-type="data" specific-use="references" id="dataset1"><person-group person-group-type="author"><name><surname>Williams</surname><given-names>CC</given-names></name><name><surname>Ferguson</surname><given-names>TD</given-names></name><name><surname>Hassall</surname><given-names>CD</given-names></name><name><surname>Abimbola</surname><given-names>W</given-names></name><name><surname>Krigolson</surname><given-names>OE</given-names></name></person-group><year iso-8601-date="2021">2021</year><data-title>The ERP, Frequency, and Time-Frequency Correlates of Feedback Processing: Insights from a Large Sample Study</data-title><source>Open Science Framework</source><pub-id pub-id-type="accession" xlink:href="https://osf.io/65x4v/">65x4v</pub-id></element-citation></p><p><element-citation publication-type="data" specific-use="references" id="dataset2"><person-group person-group-type="author"><name><surname>Telesford</surname><given-names>QK</given-names></name><name><surname>Gonzalez-Moreira</surname><given-names>E</given-names></name><name><surname>Xu</surname><given-names>T</given-names></name><name><surname>Tian</surname><given-names>Y</given-names></name><name><surname>Colcombe</surname><given-names>SJ</given-names></name><name><surname>Cloud</surname><given-names>J</given-names></name><name><surname>Russ</surname><given-names>BE</given-names></name><name><surname>Falchier</surname><given-names>A</given-names></name><name><surname>Nentwich</surname><given-names>M</given-names></name><name><surname>Mad- sen</surname><given-names>J</given-names></name><name><surname>Parra</surname><given-names>LC</given-names></name><name><surname>Schroeder</surname><given-names>CE</given-names></name><name><surname>Milham</surname><given-names>MP</given-names></name><name><surname>Franco</surname><given-names>AR</given-names></name></person-group><year iso-8601-date="2023">2023</year><data-title>EEG/FMRI Naturalistic Viewing Dataset</data-title><source>FCP/INDI</source><pub-id pub-id-type="accession" xlink:href="https://fcon_1000.projects.nitrc.org/indi/retro/nat_view.html">nat_view</pub-id></element-citation></p></sec><ack id="ack"><title>Acknowledgements</title><p>LRF and VLG were supported by NSF grants ACI-1550405 and AGS-2114860 and NIH grants R01-AG054049 and R01-AG079280. LRF was also supported by Simons Foundation grant AR-HUMAN-00004264. ST was supported by NIH U24 AA021695, NIH U01 AA021692, NIH U01 DA041089, NIH R01 DA057567, and OK was supported by NSERC Discovery Grant RGPIN 2016-0943. AM was supported by (NIMH) R21MH123875. SB was supported by NIDCD R01DC019979. 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sec-type="appendix" id="s8-1"><title>Inverse problems in dynamical systems</title><p>Analysis of brain activity can be considered from two viewpoints. One view is the theoretical construction of the equations governing brain dynamics that when implemented computationally facilitates numerical exploration of the effects of different neurophysiological parameters on the final brain states. This is the <italic>forward problem</italic>. The other view is attempting to reconstruct the actual brain activity that was observed with real measured data. This is the <italic>inverse problem</italic>. These viewpoints are complementary, as the comparison of measurements with predicted results from theoretical models is the basis for the refinement of theoretical models of the brain, while the incorporation of more refined models into the reconstruction problem can produce more accurate quantitative assessments of actual brain states.</p><p>Solving inverse problems from data acquired from measurements of nonlinear systems is a well-known challenge in many, if not most, scientific disciplines where real data are collected. Neuroimaging data is particularly challenging because it varies over so many spatial and temporal scales and has so many interacting parameters (e.g. electric and magnetic fields, local metabolism, blood flow at arterial, vascular, and capillary scales, etc.). This is in addition to the usual challenges of inverse problems, such as finite sampling and both instrument and environmental noise. Indeed, the analysis of dynamic nonlinear systems poses a very general analysis problem across multiple scientific disciplines.</p></sec><sec sec-type="appendix" id="s8-2"><title>Probabilistic approach</title><p>Characterizing the complex dynamics of a physical system by estimating the parameters of a hypothesized physical model falls under the purview of probability theory and was the motivation for our development of the EFD, described in detail in <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>; <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>. Here, we present a more intuitive overview (based on <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>) and limit the discussion to details pertinent to neuroimaging data.</p><p>The neuroimaging data we are interested in are four-dimensional, sampled at three spatial dimensions and one time dimension. Denoting the spatial sampling as <inline-formula><mml:math id="inf133"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>x</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>z</mml:mi></mml:mrow></mml:msub><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mstyle></mml:math></inline-formula>, the total number of points in a volume is <inline-formula><mml:math id="inf134"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>x</mml:mi></mml:mrow></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>z</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>. Measurements from this volume are made at a set of discrete times <inline-formula><mml:math id="inf135"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>t</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>…</mml:mo><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mstyle></mml:math></inline-formula> (assumed to be at equal intervals, though this is not a requirement of the analysis.) The data <inline-formula><mml:math id="inf136"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf137"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>…</mml:mo><mml:mo>,</mml:mo><mml:mi>n</mml:mi></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf138"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>…</mml:mo><mml:mo>,</mml:mo><mml:mi>N</mml:mi></mml:mstyle></mml:math></inline-formula> can equivalently be represented as <inline-formula><mml:math id="inf139"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mstyle></mml:math></inline-formula>, where <inline-formula><mml:math id="inf140"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>ξ</mml:mi></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>…</mml:mo><mml:mi>n</mml:mi><mml:mi>N</mml:mi></mml:mstyle></mml:math></inline-formula> defines a set of space-time locations. Each data point is of the form<disp-formula id="equ22"><label>(14)</label><mml:math id="m22"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>d</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>R</mml:mi><mml:msub><mml:mi>s</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>e</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf141"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>R</mml:mi></mml:mstyle></mml:math></inline-formula> is an operator that represents the response of the measurement system to a signal <inline-formula><mml:math id="inf142"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>s</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, and <inline-formula><mml:math id="inf143"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>e</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> is the noise with the covariance matrix <inline-formula><mml:math id="inf144"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo fence="false" stretchy="false">⟨</mml:mo><mml:mi>e</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>†</mml:mo></mml:mrow></mml:msup><mml:mo fence="false" stretchy="false">⟩</mml:mo></mml:mstyle></mml:math></inline-formula>, where <inline-formula><mml:math id="inf145"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>†</mml:mo></mml:mstyle></mml:math></inline-formula> means the complex conjugate transpose.</p><p>In NWP, the model equations are run forward in time using a set of initial conditions to generate the signal <inline-formula><mml:math id="inf146"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula>, from which can be constructed data <inline-formula><mml:math id="inf147"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>d</mml:mi></mml:mstyle></mml:math></inline-formula> by finite sampling the generated signal and adding noise and instrument constraints. For the inverse (or estimation) problem, the goal is to instead determine the signal <inline-formula><mml:math id="inf148"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula> from the actual measured data <inline-formula><mml:math id="inf149"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>d</mml:mi></mml:mstyle></mml:math></inline-formula>. This procedure is codified using Bayes’ theorem to construct the posterior probability of the signal <inline-formula><mml:math id="inf150"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula>, given the data <inline-formula><mml:math id="inf151"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>d</mml:mi></mml:mstyle></mml:math></inline-formula>, and any information <inline-formula><mml:math id="inf152"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>I</mml:mi></mml:mstyle></mml:math></inline-formula> that is known about the problem, including any assumptions or hypotheses <inline-formula><mml:math id="inf153"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>H</mml:mi></mml:mstyle></mml:math></inline-formula>:<disp-formula id="equ23"><label>(15)</label><mml:math id="m23"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:munder><mml:mrow><mml:munder><mml:mrow><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>s</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>⏟</mml:mo></mml:munder></mml:mrow><mml:mrow><mml:mi>P</mml:mi><mml:mi>o</mml:mi><mml:mi>s</mml:mi><mml:mi>t</mml:mi><mml:mi>e</mml:mi><mml:mi>r</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi><mml:mi>r</mml:mi></mml:mrow></mml:munder><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mover><mml:mrow><mml:mover><mml:mrow><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>s</mml:mi><mml:mo>,</mml:mo><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>⏞</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>L</mml:mi><mml:mi>i</mml:mi><mml:mi>k</mml:mi><mml:mi>e</mml:mi><mml:mi>l</mml:mi><mml:mi>i</mml:mi><mml:mi>h</mml:mi><mml:mi>o</mml:mi><mml:mi>o</mml:mi><mml:mi>d</mml:mi></mml:mrow></mml:mover><mml:mspace width="thinmathspace"/><mml:mspace width="thinmathspace"/><mml:mover><mml:mrow><mml:mover><mml:mrow><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>s</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>⏞</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>P</mml:mi><mml:mi>r</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi><mml:mi>r</mml:mi></mml:mrow></mml:mover></mml:mrow><mml:munder><mml:mrow><mml:munder><mml:mrow><mml:mi>P</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>⏟</mml:mo></mml:munder></mml:mrow><mml:mrow><mml:mi>E</mml:mi><mml:mi>v</mml:mi><mml:mi>i</mml:mi><mml:mi>d</mml:mi><mml:mi>e</mml:mi><mml:mi>n</mml:mi><mml:mi>c</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:munder></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>The most probable signal is the one reconstructed from the configuration of estimated parameters to produce the maximum in this posterior distribution. The underlying signal is assumed to be continuous in space-time, and thus characterized by a field <inline-formula><mml:math id="inf154"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>≡</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>ξ</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> although the data consist of discrete samples in both space and time so that the reconstructed underlying signal is <inline-formula><mml:math id="inf155"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mrow><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>∫</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mi>ξ</mml:mi></mml:mrow><mml:mo stretchy="false">)</mml:mo><mml:mi>δ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mi>ξ</mml:mi></mml:mrow><mml:mo>−</mml:mo><mml:msub><mml:mrow><mml:mi>ξ</mml:mi></mml:mrow><mml:mrow><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo><mml:mi>d</mml:mi><mml:mrow><mml:mi>ξ</mml:mi></mml:mrow></mml:mrow></mml:mstyle></mml:math></inline-formula>.</p><p>While the Bayesian approach to signal analysis is not new (for an excellent introduction, see <xref ref-type="bibr" rid="bib4">Bretthorst, 1988</xref>), there have remained practical issues that have limited its applicability to nonlinear interacting fields. By interacting, we are referring to fields that influence one another. For instance, in fMRI, blood flow at multiple scales (e.g. vascular and capillary) and electrophysiology are coupled and influence each other. The limitations in practical applications can be thought of as falling into two broad categories: (1) How to represent nonlinear interacting fields, and (2) How to incorporate relevant prior information. One approach to the first problem is reformulating Bayes’ theorem in terms of field theory (<xref ref-type="bibr" rid="bib9">Enßlin et al., 2009</xref>), called <italic>information field theory</italic> (IFT), which facilitates the use of techniques developed in the physics discipline of field theory (e.g. <xref ref-type="bibr" rid="bib82">Ryder, 1985</xref>). The advantage, and disadvantage, of this method is that it is essentially flexible in its ability to approximate any desired number of parameters and field interactions. This reformulation can be done by rewriting Bayes’ theorem (<xref ref-type="disp-formula" rid="equ23">Equation 15</xref>) in the form (<xref ref-type="bibr" rid="bib9">Enßlin et al., 2009</xref>)<disp-formula id="equ24"><label>(16)</label><mml:math id="m24"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>ψ</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>I</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mfrac><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>−</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mrow><mml:mi>Z</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where the field theoretic quantities, the Hamiltonian <inline-formula><mml:math id="inf156"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>H</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> and the partition function <inline-formula><mml:math id="inf157"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Z</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula>, are<disp-formula id="equ25"><label>(17a)</label><mml:math id="m25"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>H</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mi>ln</mml:mi><mml:mo>⁡</mml:mo><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>I</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:mrow></mml:math></disp-formula><disp-formula id="equ26"><label>(17b)</label><mml:math id="m26"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Z</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>I</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mo>∫</mml:mo><mml:mi>d</mml:mi><mml:mi>ψ</mml:mi><mml:mspace width="thinmathspace"/><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>−</mml:mo><mml:mi>H</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>The partition function is a <italic>generating function</italic> from which can be constructed expressions for all orders of field interactions. For the current purposes, however, it will be considered a constant that can be ignored. The Hamiltonian describes the conserved quantities in field theories, and in IFT describes the conservation of probability. This will be the central quantity of interest. It is written<disp-formula id="equ27"><label>(18)</label><mml:math id="m27"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>H</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub><mml:mo>−</mml:mo><mml:msup><mml:mi>j</mml:mi><mml:mrow><mml:mo>†</mml:mo></mml:mrow></mml:msup><mml:mi>ψ</mml:mi><mml:mo>+</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:msup><mml:mi>ψ</mml:mi><mml:mrow><mml:mo>†</mml:mo></mml:mrow></mml:msup><mml:msup><mml:mi>D</mml:mi><mml:mrow><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msup><mml:mi>ψ</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>H</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>ψ</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf158"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> is essentially a normalizing constant that can be ignored, <inline-formula><mml:math id="inf159"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi></mml:mstyle></mml:math></inline-formula> is an information propagator, <inline-formula><mml:math id="inf160"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi></mml:mstyle></mml:math></inline-formula> is an information source, and <inline-formula><mml:math id="inf161"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> is an interaction term (Equation 7 in <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>). The solution for the fields is the minimum of the Hamiltonian (<inline-formula><mml:math id="inf162"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>δ</mml:mi><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi>δ</mml:mi><mml:mi>ψ</mml:mi><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mstyle></mml:math></inline-formula>), which is<disp-formula id="equ28"><label>(19)</label><mml:math id="m28"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>ξ</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mi>D</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>−</mml:mo><mml:msubsup><mml:mi>H</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf163"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi class="MJX-variant" mathvariant="normal">′</mml:mi></mml:mrow></mml:msubsup></mml:mstyle></mml:math></inline-formula> symbolically represents the variation of <inline-formula><mml:math id="inf164"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> (the second term on the right-hand side of Equation 8 in <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>).</p><p>The expressions, <xref ref-type="disp-formula" rid="equ27 equ28">Equations 18; 19</xref>, are not in a form clearly equivalent to the more standard formulations of probability theory, so it is useful to demonstrate their equivalence in a simple problem. This will then make apparent where it deviates from standard formulations for use in more complex problems.</p><p>Consider the simple case in which the signal is assumed to be described by a set of model functions <inline-formula><mml:math id="inf165"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>F</mml:mi></mml:mstyle></mml:math></inline-formula>, with each component weighted by an amplitude <inline-formula><mml:math id="inf166"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>a</mml:mi></mml:mstyle></mml:math></inline-formula>. If the functions <inline-formula><mml:math id="inf167"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>F</mml:mi></mml:mstyle></mml:math></inline-formula> do not interact with one another or the noise, the interaction term <inline-formula><mml:math id="inf168"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi class="MJX-variant" mathvariant="normal">′</mml:mi></mml:mrow></mml:msubsup></mml:mstyle></mml:math></inline-formula> in <xref ref-type="disp-formula" rid="equ28">Equation 19</xref> can be ignored. Ignoring instrument effect (<inline-formula><mml:math id="inf169"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>R</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mstyle></mml:math></inline-formula>) and assuming the signal is contaminated by zero mean Gaussian noise with variance <inline-formula><mml:math id="inf170"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mi>σ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>, the solution is (<xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>)<disp-formula id="equ29"><label>(20)</label><mml:math id="m29"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>ξ</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mi>D</mml:mi><mml:mi>j</mml:mi><mml:mspace width="1em"/><mml:mtext>where</mml:mtext><mml:mspace width="1em"/><mml:mrow><mml:mo>{</mml:mo><mml:mtable columnalign="left left" rowspacing=".2em" columnspacing="1em" displaystyle="false"><mml:mtr><mml:mtd><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi>σ</mml:mi><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:mo stretchy="false">(</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mo>†</mml:mo></mml:msup><mml:mi>F</mml:mi><mml:msup><mml:mo stretchy="false">)</mml:mo><mml:mrow><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msup></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi>σ</mml:mi><mml:mrow><mml:mo>−</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>F</mml:mi><mml:mo>†</mml:mo></mml:msup><mml:mi>d</mml:mi></mml:mtd></mml:mtr></mml:mtable><mml:mo fence="true" stretchy="true" symmetric="true"/></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>The source <inline-formula><mml:math id="inf171"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi></mml:mstyle></mml:math></inline-formula> is noise-weighted projection of the signal onto the sampled model functions (sometimes called the ‘dirty map’ [<xref ref-type="bibr" rid="bib87">Tan, 1986</xref>]), and the propagator <inline-formula><mml:math id="inf172"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi></mml:mstyle></mml:math></inline-formula> characterizes the influence of the noise and the sampling of the functions <inline-formula><mml:math id="inf173"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>F</mml:mi></mml:mstyle></mml:math></inline-formula> (sometimes called the ‘dirty beam’ [<xref ref-type="bibr" rid="bib87">Tan, 1986</xref>]). The estimated signal is<disp-formula id="equ30"><label>(21)</label><mml:math id="m30"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ψ</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>ξ</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mrow><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mi>d</mml:mi><mml:mspace width="1em"/><mml:mtext>where</mml:mtext><mml:mspace width="1em"/><mml:msup><mml:mi>F</mml:mi><mml:mrow><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mo stretchy="false">(</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mo>†</mml:mo></mml:msup><mml:mi>F</mml:mi><mml:msup><mml:mo stretchy="false">)</mml:mo><mml:mrow><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>F</mml:mi><mml:mo>†</mml:mo></mml:msup></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf174"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>F</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula> is the well-known pseudo-inverse. <xref ref-type="disp-formula" rid="equ30">Equation 21</xref> is just the standard maximum a posterior result (<xref ref-type="bibr" rid="bib44">Jaynes, 2003</xref>). The rationale for the names ‘source’ and ‘propagator’ becomes clear. The input data <inline-formula><mml:math id="inf175"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>d</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> projected along the <italic>k’</italic>th component of the model function <inline-formula><mml:math id="inf176"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>F</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> provides the source <inline-formula><mml:math id="inf177"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi></mml:mstyle></mml:math></inline-formula> of new information, which is then propagated by <inline-formula><mml:math id="inf178"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi></mml:mstyle></mml:math></inline-formula> from which estimates of the field components are derived.</p><p>If the physical system were describable in terms of noninteracting plane waves, the <inline-formula><mml:math id="inf179"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>F</mml:mi></mml:mstyle></mml:math></inline-formula> would be the standard Fourier functions, then the source is just the noise-weighted inverse Fourier transform of the data, while the propagator is the covariance of the sampled Fourier model functions. Each Fourier component would constitute a ‘mode’ of the system, which would be a four-dimensional (three spatial and one temporal) time-varying volume. These modes would be ranked according to their amplitude, or eigenvalue. This result is called the ‘Fourier decomposition’ of the data and is ubiquitous across a wide range of scientific disciplines. It is important to note that this Bayesian analysis reveals that the estimate of the spatiotemporal patterns is <italic>not</italic> just the inverse Fourier transform of the data, but takes into account the uncertainties related to the sampling and the noise via the propagator <inline-formula><mml:math id="inf180"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi></mml:mstyle></mml:math></inline-formula>.</p><p>Unfortunately, many, perhaps most, physical systems are not easily characterized by such simple models. This is certainly the case for the brain electrodynamics considered in this paper, where a more appropriate general model is that of nonlinear, nonperiodic, interacting fields. This makes the process of estimating the system from the data much more difficult, because many more combinations of the model parameters are consistent with the data. In addition, nonlinear systems can be exquisitely sensitive to initial conditions, which are rarely known precisely and again can produce a wide range of results for the same set of system parameters. The IFT provides a framework to formally characterize complex interacting nonlinear fields, but no guidance on resolving these ambiguities. The resulting field theoretic description produces expressions with an essentially infinite number of terms. Without a method for effectively ranking the relative importance of the terms, problems can quickly become intractable.</p></sec><sec sec-type="appendix" id="s8-3"><title>The role of prior information</title><p>Solving seemingly intractable inverse problems requires the reduction in the number of possible system configurations (i.e. the set of parameters characterizing the system) that are consistent with the data. This can be achieved through the development of increasingly refined theoretical physical models. But probability theory provides another powerful mechanism, which is the ability to incorporate prior information. Formally, this is done through the ‘prior’ in <xref ref-type="disp-formula" rid="equ23">Equation 15</xref>. However, the apparent simplicity of this term belies the complexity in using it. One common and conceptually simple use is to incorporate statistical parameters from previous measurements that characterize a distribution known, or estimated, to describe the system. For example, for a system whose parameters are assumed to be normally distributed, estimates of average and standard deviation can be used to construct a Gaussian prior distribution. While such an approach is common, it is not particularly useful when systems are highly nonlinear and non-Gaussian.</p><p>One of the remarkable traits of the brain’s electrical activity is that, despite its seemingly often ‘random’ behavior (e.g. neuronal avalanches), it displays the remarkable ability to produce highly synchronized behavior in space and time that characterize coherent modes of activity. Characterizing such coherences is one of the major objectives of neuroimaging data analysis. Observations of such data bring up a subtle but important issue that arises in the estimation of coherent space-time processes. By coherence, we mean that there are spatial patterns that are persistent in time. For example, a tornado is a persistent spatially localized vorticity. While these notions are intuitively clear, they are notoriously difficult to formalize in analytical theories of estimation. Consider, for example, the idealized numerical simulation shown in <xref ref-type="fig" rid="app1fig1">Appendix 1—figure 1</xref> in which there are two areas of activity in Gaussian random noise: a point oscillating with very high SNR (centered on the red dot) but also a larger circular region with very low SNR (centered at the blue dot). The computation question can be phrased in terms of ‘What is the significance of the activated regions?’ In more intuitive terms, while the high SNR region clearly seems to indicate an area of activity, we intuitively understand that the larger region is significant despite its low amplitude because it is so persistently coherent over such a large spatial region. Is there a way to incorporate the spatial coherence into the computation of significance?</p></sec><sec sec-type="appendix" id="s8-4"><title>Entropy spectrum pathways</title><p>The problem then is this: How does one identify regions of spatial and temporal coherence in a dataset that contains complex spatiotemporal patterns that are unique from event to event and thus not amenable to fitting by some standard model? This was the problem faced by Lorenz, who recognized that the implications of the unpredictability of atmospheric systems for estimation theory required a general method that could be applied to any dataset from such systems, which led him to the formulation of <italic>empirical orthogonal functions</italic> (<xref ref-type="bibr" rid="bib57">Lorenz, 1956</xref>), which is synonymous with the PCA (<xref ref-type="bibr" rid="bib76">Pearson, 1901</xref>). On the face of it, PCA is ‘model free’ in that the physical model is not parameterized. However, it is based on the assumption that the data can be described by a multivariate Gaussian distribution and proceeds by successively fitting the data to <inline-formula><mml:math id="inf181"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>n</mml:mi></mml:mstyle></mml:math></inline-formula> ellipsoids following the subtraction of the previous <inline-formula><mml:math id="inf182"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>n</mml:mi><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mstyle></mml:math></inline-formula> components. While PCA is easy to implement, it typically is a poor model for complex physical systems, and the resulting components therefore can often have little relationship to the actual coherent modes within the data. Therefore, it makes identification of physically relevant parameters more problematic.</p><p>Remarkably, one answer to this question of how to incorporate prior information on system coherences is hidden in plain sight - it is contained within the data itself. Spatial and temporal coherences are characterized by being significantly correlated with their neighbors. In an image, this could simply be the similarity of intensities in neighboring spatial locations. In neuroimaging data, it might take the form of similar waveform vectors in neighboring regions of both space and time. This concept can be formalized by computing space-time correlations from the data, which are local interactions (i.e. computed in adjacent spatial and temporal points in the data) but, when computed at every location in a dataset, also provide information about the larger-scale coherent structures in the data. The relationship between these local interactions and the large-scale structures in the data is the subject of the theory of ESPs (<xref ref-type="bibr" rid="bib14">Frank and Galinsky, 2014</xref>).</p><p>The essence of the theory is that the coupling between adjacent (in space or time) data elements <inline-formula><mml:math id="inf183"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>i</mml:mi></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf184"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi></mml:mstyle></mml:math></inline-formula> can be viewed as a measure of the information that can be transmitted between those two locations. One could imagine computing the correlation between the copper content in adjacent elements of a volumetric image of a transmission cable. The resulting high probability regions of adjacent high correlations would be the copper wire, and therefore literally be the path of maximum information transmission. This concept can be formalized and abstracted to any dataset using a parameter or set of parameters. The local interactions reveal the large-scale pathways in the data and therefore the pathways of information transmission about the coherences of these parameters. This concept is formalized by computing a <italic>coupling matrix</italic> <inline-formula><mml:math id="inf185"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>Q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> between adjacent data elements <inline-formula><mml:math id="inf186"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>i</mml:mi></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf187"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>j</mml:mi></mml:mstyle></mml:math></inline-formula> and computing its eigenvectors <inline-formula><mml:math id="inf188"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>, <inline-formula><mml:math id="inf189"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>…</mml:mo><mml:mo>,</mml:mo><mml:mi>M</mml:mi></mml:mstyle></mml:math></inline-formula>. (For a detailed discussion of the construction of <inline-formula><mml:math id="inf190"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>Q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, see <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>.) Remarkably, these eigenvectors can be interpreted as the pathways between locations that can be reached in the most number of ways. In other words, the path in the data that have maximum path entropy. In the wire example, an electron starting at any location on the wire would preferentially travel along that wire. The eigenvector with the largest eigenvalue (<inline-formula><mml:math id="inf191"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mstyle></mml:math></inline-formula>), the principal eigenvector, defines the maximum entropy pathway, that which is most preferred.</p><p>A simple example of ESP to uncover spatial correlations is shown in <xref ref-type="fig" rid="app1fig2">Appendix 1—figure 2</xref> (top), where a simple 2D spatial curve is detected with the principal eigenvector of the coupling matrix formed from the intensities at each location. This is to be compared with the standard PCA result in <xref ref-type="fig" rid="app1fig2">Appendix 1—figure 2</xref> (middle) that required multiple components to be computed and still only approximately detects the correct structure. The extension to space-time is shown in <xref ref-type="fig" rid="app1fig2">Appendix 1—figure 2</xref> (bottom), where the principal ESP eigenvector correctly picks out the preferred space-time pathway. PCA in this case (not shown) becomes even more problematic.</p><p>The recognition that non-Gaussian systems are poorly described by PCA leads to the formulation of a nonlinear version called ICA, which seeks to decompose data into independent non-Gaussian components. However, this ‘model-free’ method also contains hidden assumptions that produce unreliable results in nonlinear complex physical systems (see <xref ref-type="bibr" rid="bib16">Frank and Galinsky, 2016b</xref>, for a more extended discussion and examples).</p></sec><sec sec-type="appendix" id="s8-5"><title>The entropy field decomposition</title><p>The ESP prior can be incorporated into the estimation scheme by using the coupling matrix <inline-formula><mml:math id="inf192"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>Q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> as the prior in <xref ref-type="disp-formula" rid="equ23">Equation 15</xref><disp-formula id="equ31"><label>(22)</label><mml:math id="m31"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>p</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>s</mml:mi><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mi>d</mml:mi><mml:mo>,</mml:mo><mml:mi>I</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mrow><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mrow><mml:mn>2</mml:mn><mml:mi>π</mml:mi><mml:mi>Q</mml:mi></mml:mrow><mml:msup><mml:mrow><mml:mo stretchy="false">|</mml:mo></mml:mrow><mml:mrow><mml:mn>1</mml:mn><mml:mrow><mml:mo>/</mml:mo></mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mfrac><mml:mi>exp</mml:mi><mml:mo>⁡</mml:mo><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:mo>−</mml:mo><mml:mfrac><mml:mn>1</mml:mn><mml:mn>2</mml:mn></mml:mfrac><mml:msubsup><mml:mrow><mml:mi>s</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>†</mml:mo></mml:mrow></mml:msubsup><mml:msub><mml:mi>Q</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mrow><mml:mi>s</mml:mi></mml:mrow><mml:mrow><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mrow><mml:mpadded width="0"><mml:mphantom><mml:mo>†</mml:mo></mml:mphantom></mml:mpadded></mml:mrow></mml:mrow></mml:msubsup></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>which then becomes part of the Hamiltonian in <xref ref-type="disp-formula" rid="equ24">Equation 16</xref>. (For a detailed discussion of the construction of <inline-formula><mml:math id="inf193"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>Q</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula>, see <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>.) The result is that the significant spatial and temporal correlations within the data can provide highly relevant prior information about the most probable parameter configurations of a physical system and select out only the limited number of relevant terms within the infinite number of choices that make the inverse problem consistent with the data. The incorporation of the ESP theory into the Bayesian framework of IFT is called the EFD.</p><p>Returning to the simple example above, with the ESP prior, the solution given in <xref ref-type="disp-formula" rid="equ29">Equation 20</xref> is the same but with a modified propagator that now includes the coupling matrix:<disp-formula id="equ32"><label>(23)</label><mml:math id="m32"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mo>[</mml:mo><mml:mrow><mml:mi>Q</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi>F</mml:mi><mml:mo>†</mml:mo></mml:msup><mml:msubsup><mml:mi mathvariant="normal">Σ</mml:mi><mml:mrow><mml:mi>e</mml:mi></mml:mrow><mml:mrow><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msubsup><mml:mi>F</mml:mi></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mrow><mml:mo>−</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>This means that the estimated modes of the system are now dependent on the coupling matrix <inline-formula><mml:math id="inf194"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Q</mml:mi></mml:mstyle></mml:math></inline-formula>. And in particular, the optimal solutions depend on the eigenvectors <inline-formula><mml:math id="inf195"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> of <inline-formula><mml:math id="inf196"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Q</mml:mi></mml:mstyle></mml:math></inline-formula>. Therefore, the EFD modes are found by expressing the probability, i.e., the Hamiltonian, in terms of <inline-formula><mml:math id="inf197"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula>. In other words, whereas in the simplest, uncoupled problem above, the Fourier functions serve as the proper ‘basis’ to describe the problem, now the eigenfunction of the <inline-formula><mml:math id="inf198"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Q</mml:mi></mml:mstyle></mml:math></inline-formula> serves that function. These eigenvectors incorporate both the spatial and the temporal correlations, and thus address the problem shown in <xref ref-type="fig" rid="app1fig1">Appendix 1—figure 1</xref>: the significance of the detected activated region is enhanced by the adjacency, or clustering, of the activated voxels, as we intuitively believe. Therefore, no post hoc clustering of voxels determined independently to be activated based on their time course is required, which is the current widespread methodology for detecting activation in, for example, fMRI data (<xref ref-type="bibr" rid="bib69">Nichols and Holmes, 2002</xref>; <xref ref-type="bibr" rid="bib96">Winkler et al., 2014</xref>; <xref ref-type="bibr" rid="bib8">Eklund et al., 2016</xref>; <xref ref-type="bibr" rid="bib94">Wang et al., 2021</xref>).</p><p>This extends to the more general solution where interactions between fields are considered as well, and the interaction Hamiltonian <inline-formula><mml:math id="inf199"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mi>H</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi></mml:mrow><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi class="MJX-variant" mathvariant="normal">′</mml:mi></mml:mrow></mml:msubsup></mml:mstyle></mml:math></inline-formula> (<xref ref-type="disp-formula" rid="equ28">Equation 19</xref> is not ignored see <xref ref-type="bibr" rid="bib15">Frank and Galinsky, 2016a</xref>, for details). In general, solving the eigenvalue problem for <inline-formula><mml:math id="inf200"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Q</mml:mi></mml:mstyle></mml:math></inline-formula> produces a <italic>transition probability</italic> <inline-formula><mml:math id="inf201"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>p</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mi>i</mml:mi><mml:mi>j</mml:mi><mml:mi>k</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:math></inline-formula> between locations <inline-formula><mml:math id="inf202"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo stretchy="false">(</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:math></inline-formula> for the <italic>k’</italic>th mode and an <italic>equilibrium distribution</italic> <inline-formula><mml:math id="inf203"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>μ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula> associated with the set of <inline-formula><mml:math id="inf204"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mi>M</mml:mi></mml:mstyle></mml:math></inline-formula> mode eigenvectors <inline-formula><mml:math id="inf205"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>ϕ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">(</mml:mo><mml:mi>k</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:math></inline-formula>. The EFD procedure produces <inline-formula><mml:math id="inf206"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>M</mml:mi></mml:mstyle></mml:math></inline-formula> modes that are ranked by their eigenvalues, providing a simple, unsupervised method for characterizing the primary modes of data collected from an arbitrarily complex nonlinear, nonperiodic, non-Gaussian physical system.</p><p>A compelling feature of the EFD approach is that the basis functions <italic>are unique to every problem</italic>, since they are derived directly from the data. This makes the EFD approach powerful for physical systems that are complex nonlinear systems, such as brain neural activity. Moreover, the key practical issue is that the coupling matrix <inline-formula><mml:math id="inf207"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>Q</mml:mi></mml:mstyle></mml:math></inline-formula> can be defined by the user according to the problem at hand. The details of incorporating multiple parameters into the coupling matrix are discussed in <xref ref-type="bibr" rid="bib22">Galinsky and Frank, 2017</xref>. A schematic of the EFD procedure is shown in <xref ref-type="fig" rid="app1fig3">Appendix 1—figure 3</xref>.</p></sec><sec sec-type="appendix" id="s8-6"><title>Multi-modality EFD (JESTER)</title><p>Extending the EFD methods to multiple modalities by incorporating coupling between different parameters, which we call JESTER (<xref ref-type="bibr" rid="bib22">Galinsky and Frank, 2017</xref>), is accomplished as follows. For <inline-formula><mml:math id="inf208"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>m</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>,</mml:mo><mml:mi>M</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>, different modalities <inline-formula><mml:math id="inf209"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>d</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> with the coupling matrices <inline-formula><mml:math id="inf210"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>Q</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> that all correspond to the same unknown signal <inline-formula><mml:math id="inf211"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula>, intermodality coupling matrix can be constructed as the product of the coupling matrices for the individual modalities expressed in the ESP basis and registered to a common reference frame, which we denote <inline-formula><mml:math id="inf212"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mrow><mml:mover><mml:mi>Q</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>: i.e., the joint coupling matrix is <inline-formula><mml:math id="inf213"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msup><mml:mrow><mml:mi mathvariant="bold-script">Q</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:munder><mml:mo>∏</mml:mo><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:munder><mml:msup><mml:mrow><mml:mover><mml:mi>Q</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:mstyle></mml:math></inline-formula>. More specifically, the joint coupling matrix <inline-formula><mml:math id="inf214"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msub><mml:mrow><mml:mi mathvariant="bold-script">Q</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mstyle></mml:math></inline-formula> between any two space-time locations <inline-formula><mml:math id="inf215"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo stretchy="false">(</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> can be written in the general (equivalent) form as<disp-formula id="equ33"><label>(24)</label><mml:math id="m33"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ln</mml:mi><mml:mo>⁡</mml:mo><mml:msub><mml:mrow><mml:mi mathvariant="bold-script">Q</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:munderover><mml:mo>∑</mml:mo><mml:mrow><mml:mi>m</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mi>M</mml:mi></mml:munderover><mml:msubsup><mml:mi>β</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mi>ln</mml:mi><mml:mo>⁡</mml:mo><mml:msubsup><mml:mrow><mml:mover><mml:mi>Q</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where the exponents <inline-formula><mml:math id="inf216"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>β</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> can either be some constants or functions of data collected for different modalities <inline-formula><mml:math id="inf217"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:msubsup><mml:mi>β</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>≡</mml:mo><mml:msup><mml:mi>β</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mrow><mml:mover><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mo mathvariant="bold">~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="bold-italic">i</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mover><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mo mathvariant="bold">~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="bold-italic">j</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">)</mml:mo><mml:mo>,</mml:mo><mml:msub><mml:mrow><mml:mover><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mo mathvariant="bold">~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="bold-italic">i</mml:mi></mml:mrow></mml:msub><mml:mo>≡</mml:mo><mml:mo fence="false" stretchy="false">{</mml:mo><mml:msubsup><mml:mrow><mml:mover><mml:mi>d</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>,</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>,</mml:mo><mml:msubsup><mml:mrow><mml:mover><mml:mi>d</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>M</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo fence="false" stretchy="false">}</mml:mo></mml:mrow></mml:mstyle></mml:math></inline-formula>, where <inline-formula><mml:math id="inf218"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mrow><mml:mover><mml:mi>d</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf219"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mrow><mml:mover><mml:mi>Q</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> represent, respectively, the data and the coupling matrix of the modality dataset <inline-formula><mml:math id="inf220"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>m</mml:mi></mml:mstyle></mml:math></inline-formula> represented in the ESP basis and evaluated at locations <inline-formula><mml:math id="inf221"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> and <inline-formula><mml:math id="inf222"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula> of a common reference domain <inline-formula><mml:math id="inf223"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>R</mml:mi></mml:mstyle></mml:mrow></mml:mstyle></mml:math></inline-formula>:<disp-formula id="equ34"><label>(25)</label><mml:math id="m34"><mml:mrow><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msubsup><mml:mrow><mml:mover><mml:mi>d</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mi>i</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mrow><mml:mi>d</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mi>ψ</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mo>,</mml:mo><mml:mspace width="2em"/><mml:msubsup><mml:mrow><mml:mover><mml:mi>Q</mml:mi><mml:mo>~</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msup><mml:mi>Q</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mrow><mml:msup><mml:mi>ψ</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo stretchy="false">)</mml:mo><mml:mo>,</mml:mo><mml:msup><mml:mi>ψ</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo stretchy="false">(</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mstyle></mml:mrow></mml:math></disp-formula></p><p>where <inline-formula><mml:math id="inf224"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:msup><mml:mi>ψ</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo stretchy="false">(</mml:mo><mml:mi>m</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:msup><mml:mo>:</mml:mo><mml:mi>R</mml:mi><mml:mo stretchy="false">→</mml:mo><mml:mi>X</mml:mi></mml:mstyle></mml:math></inline-formula> denotes a diffeomorphic mapping of <italic>m</italic>th modality from the reference domain <inline-formula><mml:math id="inf225"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>R</mml:mi></mml:mstyle></mml:math></inline-formula> to an acquisition space <inline-formula><mml:math id="inf226"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>X</mml:mi></mml:mstyle></mml:math></inline-formula>. In the general EEG reconstruction problem, the coupling of modalities can include the EEG data, the high-resolution anatomical MRI data, fMRI data, and dMRI data (<xref ref-type="bibr" rid="bib23">Galinsky et al., 2018</xref>).</p><fig id="app1fig1" position="float"><label>Appendix 1—figure 1.</label><caption><title>The significance of a detected spatiotemporal pattern.</title><p>Idealized numerical simulation in which there are two areas of activity in Gaussian random noise: a point oscillating with very high signal-to-noise (SNR) (centered on the red dot) but also a larger circular region with very low SNR (centered at the blue dot). Traditional estimation methods tend to favor high SNR signals (red dot) but have difficulty with low SNR activity with very high spatial correlations (blue dot). The entropy field decomposition (EFD) takes both spatial and temporal correlations into account and therefore detects both regions.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app1-fig1-v1.tif"/></fig><fig id="app1fig2" position="float"><label>Appendix 1—figure 2.</label><caption><title>(Top left) Original lattice; (top right) entropy spectrum pathway (ESP) probability.</title><p>(Middle) Principal components analysis (PCA) results on same original lattice. The ESP probability locates the structure in a single calculation. The PCA decomposition, even for six components, shows significant errors. Several more components would be required to accurately fit the data. (Bottom row) Space-time ESP. (Top left) Space-time trajectory of 2D data; (top right) ESP probability.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app1-fig2-v1.tif"/></fig><fig id="app1fig3" position="float"><label>Appendix 1—figure 3.</label><caption><title>Schematic for the construction of space-time entropy field decomposition (EFD) modes from the data.</title></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app1-fig3-v1.tif"/></fig></sec></sec></app><app id="appendix-2"><title>Appendix 2</title><sec sec-type="appendix" id="s9"><title>Data and methods</title><sec sec-type="appendix" id="s9-1"><title>Data</title><sec sec-type="appendix" id="s9-1-1"><title>Visual paradigm data</title><p>For complete details of the fMRI and EEG acquisitions, see <xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>. Minimal details for the EEG and MRI acquisitions are provided here for continuity.</p><sec sec-type="appendix" id="s9-1-1-1"><title>EEG acquisitions</title><p>Duplicated from <xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>. EEG is collected using a customized cap to record 61 cortical channels, two electrooculogram (EOG) channels placed above (channel 64) and below the left eye (channel 63), and one electrocardiography (ECG) channel (channel 32) placed on the back. In addition, the cap also contains a reference and ground electrode. Electrodes were filled using V19 Abralyt HiCl electrode gel. Electrode impedance was kept below 20 kOhm. EEG was recorded using BrainVision Recorder at a sampling rate of 5 kHz.</p></sec><sec sec-type="appendix" id="s9-1-1-2"><title>MRI acquisitions</title><p>Duplicated from <xref ref-type="bibr" rid="bib90">Telesford et al., 2023</xref>. MRI data were acquired using a 12-channel head coil on 3.0T Siemens TIM Trio. MPRAGE structural T1w images were acquired with the following parameters: TR = 2500 ms; TI = 1200 ms; TE = 2.5 ms; slices = 192; matrix size = 256 × 256; voxel size = 1 mm<sup>3</sup> isotropic; flip angle = 8°; partial Fourier off; pixel bandwidth = 190 Hz/Px. All BOLD fMRI sequences were acquired with these parameters: TR = 2100 ms; TE = 24.6 ms; flip angle = 60°; slices = 38; matrix size = 64 × 64; voxel size = 3.469 × 3.469 × 3.330 mm<sup>3</sup>.</p></sec></sec></sec><sec sec-type="appendix" id="s9-2"><title>Attention paradigm data</title><sec sec-type="appendix" id="s9-2-1"><title>Simultaneous EEG/fMRI acquisition</title><p>fMRI and structural MRI images were acquired on a Siemens 3T TIM-Trio scanner (NKI Center for Biomedical Imaging and Neuromodulation) equipped with a 32-channel phased array head coil. Structural T1 and T2 scans were collected using standard sequences. Whole-brain BOLD data was acquired with a gradient-echo EPI sequence (TR = 2000 ms; TE = 30 ms; flip angle = 80°). EEG data were acquired concurrently with fMRI using an MR-compatible EEG amplifier (BrainVision MR series, Brain Products, Munich, Germany) and a 64-channel MR-compatible ring electrode cap with 10–20 International System electrode placement cap. EEG data was sampled at a rate of 5 kHz EEG data were acquired at a rate of 5 kHz using BrainVision Recorder software (Brain Products). Electrocardiographic data were captured from electrodes on the backs of subjects. The reference electrode was positioned between Fz and Cz. Scanner and heartbeat artifacts were removed offline from the EEG signal using an average template subtraction procedure (<xref ref-type="bibr" rid="bib68">Niazy et al., 2005</xref>), and the data was resampled to 250 Hz.</p></sec><sec sec-type="appendix" id="s9-2-2"><title>Traditional EEG analysis</title><p>The single-trial EEG signal from each electrode was convolved with a 3-cycle Morlet wavelet computed over a 3 s window centered at the onset of each stimulus and averaged separately for each stimulus type. The averaged spectral amplitude at each time point was then baseline-corrected by subtracting the mean spectral amplitude over the <inline-formula><mml:math id="inf227"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>−</mml:mo><mml:mn>200</mml:mn></mml:mstyle></mml:math></inline-formula> to <inline-formula><mml:math id="inf228"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>−</mml:mo><mml:mn>50</mml:mn></mml:mstyle></mml:math></inline-formula> prestimulus interval. Further details of postprocessing and time-frequency analyses methods are described in <xref ref-type="bibr" rid="bib52">Lakatos et al., 2005</xref>; <xref ref-type="bibr" rid="bib59">Martínez et al., 2015</xref>; <xref ref-type="bibr" rid="bib60">Martínez et al., 2019</xref>.</p></sec></sec><sec sec-type="appendix" id="s9-3"><title>Reward circuit data</title><sec sec-type="appendix" id="s9-3-1"><title>Task and design acquisition</title><p>Participants completed a simple gambling task (<xref ref-type="bibr" rid="bib95">Williams et al., 2021</xref>). On each trial, they saw a black fixation cross for 500 ms, followed by two colored squares for 500 ms, and then the fixation cross turned gray (go cue), and participants were to select one of the two squares (square locations - left, right - were randomized on each trial) within a 2000 ms time limit. They were then presented with a black fixation cross for 300–500 ms, and then, simple feedback as to their performance (‘WIN’ for gain, ‘LOSE’ for loss) for 1000 ms in black font. If the participants responded before the go cue, they were instead delivered ‘TOO FAST’ feedback, and if they did not respond before the 2000 ms time limit, it would be considered a loss. The goal of the participants was to accumulate wins by determining which of the two squares would more often lead to gains (60% vs 10%). In this task, participants accumulated wins; however, were not paid money. They would see the same pair of colors for one block of 20 trials. They conducted six blocks of unique color pairs.</p></sec><sec sec-type="appendix" id="s9-3-2"><title>Participants</title><p>Five hundred undergraduate students were included and were recruited via the University of Victoria psychology participant pool (see <xref ref-type="bibr" rid="bib95">Williams et al., 2021</xref>, for details). The data was collected until 500 participants became available that were not characterized by one of the following a priori criteria: trial count after artifact rejection was less than 15 per condition, total artifact rejection exceeded 40% of trials rejected, FCz (electrode of interest) specific artifact rejection exceeded 40% of trials rejected, or independent component analysis-based blink correction failed. These criteria were extremely strict to ensure clean data in the analyses, and as such, a total of 637 participants were analyzed before reaching the goal of 500 clean participants. All participants had normal or corrected-to-normal vision and volunteered to take part in the experiment for extra course credit in a psychology course. All participants provided informed consent approved by the University of Victoria’s Human Research Ethics Board.</p></sec><sec sec-type="appendix" id="s9-3-3"><title>Data acquisition and preprocessing</title><p>Data were re-referenced to an average mastoid reference and filtered using a 0.1–30 Hz passband (Butterworth, order 4) and a 60 Hz notch filter. Correction for eye blinks was performed using EEGLAB’s ICA. Components reflective of blinks were manually identified and removed via topographic maps and component loadings, and data were reconstructed. Data were then segmented from <inline-formula><mml:math id="inf229"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>−</mml:mo><mml:mn>500</mml:mn></mml:mstyle></mml:math></inline-formula> to 1500 ms relative to feedback stimulus onset, baseline-corrected using a <inline-formula><mml:math id="inf230"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mo>−</mml:mo><mml:mn>200</mml:mn></mml:mstyle></mml:math></inline-formula> to <inline-formula><mml:math id="inf231"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>0</mml:mn><mml:mi>m</mml:mi><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula> window, and run through artifact rejection with <inline-formula><mml:math id="inf232"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>10</mml:mn><mml:mi>μ</mml:mi><mml:mi>V</mml:mi><mml:mrow class="MJX-TeXAtom-ORD"><mml:mo>/</mml:mo></mml:mrow><mml:mi>m</mml:mi><mml:mi>s</mml:mi></mml:mstyle></mml:math></inline-formula> gradient and <inline-formula><mml:math id="inf233"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mn>100</mml:mn><mml:mi>μ</mml:mi><mml:mi>V</mml:mi></mml:mstyle></mml:math></inline-formula> maximum-minimum criteria. Data were preprocessed to identify noisy or damaged electrodes using artifact rejection trial removal rates for each electrode.</p><p>The 1 s of recorded sequence for each ‘WIN’ or ‘LOSE’ event were extracted from recordings for each participant (with 22 ms of pre-event sample and 488 ms of post-event sample) and combined together to form separate winning and losing datasets. Each of those datasets was processed using SPECTRE to construct the approximate inverse solution for the potential <inline-formula><mml:math id="inf234"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mi>ϕ</mml:mi></mml:mstyle></mml:math></inline-formula> across an entire 2 mm MNI brain volume.</p></sec></sec><sec sec-type="appendix" id="s9-4"><title>iEEG validation: additional subjects</title><p>The analysis presented in <xref ref-type="fig" rid="app2fig1">Appendix 2—figures 1</xref>–<xref ref-type="fig" rid="app2fig3">3</xref> is the same analysis for Subjects 2–4 as presented for Subject 1 in <xref ref-type="fig" rid="fig8">Figure 8</xref>.</p><fig id="app2fig1" position="float"><label>Appendix 2—figure 1.</label><caption><title>Validation of SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) with intracranial electroencephalography (iEEG) data for Subject 2 (see <xref ref-type="fig" rid="fig8">Figure 8</xref> for details).</title></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app2-fig1-v1.tif"/></fig><fig id="app2fig2" position="float"><label>Appendix 2—figure 2.</label><caption><title>Validation of SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) with intracranial electroencephalography (iEEG) data for Subject 3 (see <xref ref-type="fig" rid="fig8">Figure 8</xref> for details).</title></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app2-fig2-v1.tif"/></fig><fig id="app2fig3" position="float"><label>Appendix 2—figure 3.</label><caption><title>Validation of SPatially resolved EEG Constrained with Tissue properties by Regularized Entropy (SPECTRE) with intracranial electroencephalography (iEEG) data for Subject 4 (see <xref ref-type="fig" rid="fig8">Figure 8</xref> for details).</title></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-100123-app2-fig3-v1.tif"/></fig></sec></sec></app></app-group></back><sub-article article-type="editor-report" id="sa0"><front-stub><article-id pub-id-type="doi">10.7554/eLife.100123.3.sa0</article-id><title-group><article-title>eLife Assessment</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Jbabdi</surname><given-names>Saad</given-names></name><role specific-use="editor">Reviewing Editor</role><aff><institution>University of Oxford</institution><country>United Kingdom</country></aff></contrib></contrib-group><kwd-group kwd-group-type="claim-importance"><kwd>Fundamental</kwd></kwd-group><kwd-group kwd-group-type="evidence-strength"><kwd>Convincing</kwd></kwd-group></front-stub><body><p>This <bold>fundamental</bold> work has the potential to advance our understanding of brain activity using electrophysiological data, by proposing a completely new approach to reconstructing EEG data that challenges the assumptions typically made in the solutions to Maxwell’s equations. <bold>Convincing</bold> evidence for the superior spatio-temporal resolution of this method is provided through a number of experiments, including simultaneous FMRI/EEG acquisitions. This work will be of broad interest to neuroscientists and neuroimaging.</p></body></sub-article><sub-article article-type="referee-report" id="sa1"><front-stub><article-id pub-id-type="doi">10.7554/eLife.100123.3.sa1</article-id><title-group><article-title>Reviewer #1 (Public review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>I want to reiterate my comment from the first round of reviews: that I am insufficiently familiar with the intricacies of Maxwell's equations to assess the validity of the assumptions and the equations being used by WETCOW. The work ideally needs assessing by someone more versed in that area, especially given the potential impact of this method if valid.</p><p>Effort has been made in these revisions to improve explanations of the proposed approach (a lot of new text has been added) and to add new simulations.</p><p>However, the authors have still not compared their method on real data with existing standard approaches for reconstructing data from sensor to physical space. Refusing to do so because existing approaches are deemed inappropriate (i.e. they &quot;are solving a different problem&quot;) is illogical.</p><p>Similarly, refusing to compare their method with existing standard approaches for spatio-temporally describing brain activity, just because existing approaches are deemed inappropriate, is illogical.</p><p>For example, the authors say that &quot;it's not even clear what one would compare [between the new method and standard approaches]&quot;. How about:</p><p>(1) Qualitatively: compare EEG activation maps. I.e. compare what you would report to a researcher about the brain activity found in a standard experimental task dataset (e.g. their gambling task). People simply want to be able to judge, at least qualitatively on the same data, what the most equivalent output would be from the two approaches. Note, both approaches do not need to be done at the same spatial resolution if there are constraints on this for the comparison to be useful.</p><p>and</p><p>(2) Quantitatively: compare the correlation scores between EEG activation maps and fMRI activation maps</p><p>The abstract claims that there is a &quot;direct comparison with standard state-of-the-art EEG analysis in a well-established attention paradigm&quot;, but no actual comparison appears to have been completed in the paper.</p></body></sub-article><sub-article article-type="referee-report" id="sa2"><front-stub><article-id pub-id-type="doi">10.7554/eLife.100123.3.sa2</article-id><title-group><article-title>Reviewer #2 (Public review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>Summary:</p><p>The manuscript claims to present a novel method for direct imaging of electric field networks from EEG data with higher spatiotemporal resolution than even fMRI. Validation of the EEG reconstructions with EEG/FMRI, EEG, and iEEG datasets are presented. Subsequently, reconstructions from a large EEG datasets of subjects performing a gambling task are presented.</p><p>Strengths:</p><p>If true and convincing, the proposed theoretical framework and reconstruction algorithm can revolutionise the use of EEG source reconstructions.</p><p>Weaknesses:</p><p>There is very little actual information in the paper about either the forward model or the novel method of reconstruction. Only citations to prior work by the authors are given with absolutely no benchmark comparisons, making the manuscript difficult to read and interpret in isolation to their prior body of work.</p><p>Comments on revisions:</p><p>This is a major rewrite of the paper. The authors have improved the discourse vastly. There is now a lot of didactics included but they are not always relevant to the paper. The section on Maxwell's equation does a disservice to the literature in prior work in bioelectromagnetism and does not even address the issues raised in classic text books by Plonsey et al. There is no logical &quot;backwardness&quot; in the literature. They are based on the relative values of constants in biological tissues. Several sections of the appendix discuss in terms of weather predictions and could just be written specifically for the problem here. There are reinventions of many standard ideas in terms of physics discourses, like Bayesian theory or PCA etc. I think that the paper remains quite opaque and many of the original criticisms remain, especially as they relate to multimodal datasets. The overall algorithm still remains poorly described. The comparisons to benchmark remain unaddressed and the authors state that they couldn't get Loreta to work and so aborted that. The figures are largely unaltered, although they have added a few more, and do not clearly depict the ideas. Again, no benchmark comparisons are provided to evaluate the results and the performance in comparison to other benchmarks.</p></body></sub-article><sub-article article-type="author-comment" id="sa3"><front-stub><article-id pub-id-type="doi">10.7554/eLife.100123.3.sa3</article-id><title-group><article-title>Author response</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Frank</surname><given-names>Lawrence R</given-names></name><role specific-use="author">Author</role><aff><institution>University of California, San Diego</institution><addr-line><named-content content-type="city">La Jolla</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Galinsky</surname><given-names>Vitaly L</given-names></name><role specific-use="author">Author</role><aff><institution>University of California, San Diego</institution><addr-line><named-content content-type="city">La Jolla</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Krigolson</surname><given-names>Olave</given-names></name><role specific-use="author">Author</role><aff><institution>University of Victoria</institution><addr-line><named-content content-type="city">Victoria</named-content></addr-line><country>Canada</country></aff></contrib><contrib contrib-type="author"><name><surname>Tapert</surname><given-names>Susan</given-names></name><role specific-use="author">Author</role><aff><institution>University of California San Diego</institution><addr-line><named-content content-type="city">La Jolla</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Bickel</surname><given-names>Stephan</given-names></name><role specific-use="author">Author</role><aff><institution>Feinstein Institute for Medical Research</institution><addr-line><named-content content-type="city">New York</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Martinez</surname><given-names>Antigona</given-names></name><role specific-use="author">Author</role><aff><institution>The Nathan Kline Institute for Psychiatric Research</institution><addr-line><named-content content-type="city">New York</named-content></addr-line><country>United States</country></aff></contrib></contrib-group></front-stub><body><p>The following is the authors’ response to the current reviews.</p><disp-quote content-type="editor-comment"><p><bold>Reviewer 1 (Public Review):</bold></p><p>I want to reiterate my comment from the first round of reviews: that I am insufficiently familiar with the intricacies of Maxwell’s equations to assess the validity of the assumptions and the equations being used by WETCOW. The work ideally needs assessing by someone more versed in that area, especially given the potential impact of this method if valid.</p></disp-quote><p>We appreciate the reviewer’s candor. Unfortunately, familiarity with Maxwell’s equations is an essential prerequisite for assessing the veracity of our approach and our claims.</p><disp-quote content-type="editor-comment"><p>Effort has been made in these revisions to improve explanations of the proposed approach (a lot of new text has been added) and to add new simulations. However, the authors have still not compared their method on real data with existing standard approaches for reconstructing data from sensor to physical space. Refusing to do so because existing approaches are deemed inappropriate (i.e. they “are solving a different problem”) is illogical.</p></disp-quote><p>Without understanding the importance of our model for brain wave activity (cited in the paper) derived from Maxwell’s equations in inhomogeneous and anisotropic brain tissue, it is not possible to critically evaluate the fundamental difference between our method and the standard so-called “source localization” method which the Reviewer feels it is important to compare our results with. Our method is not “source localization” which is a class of techniques based on an inappropriate model for static brain activity (static dipoles sprinkled sparsely in user-defined areas of interest). Just because a method is “standard” does not make it correct. Rather, we are reconstructing a whole brain, time dependent electric field potential based upon a model for brain wave activity derived from first principles. It is comparing two methods that are “solving different problems” that is, by definition, illogical.</p><disp-quote content-type="editor-comment"><p>Similarly, refusing to compare their method with existing standard approaches for spatio-temporally describing brain activity, just because existing approaches are deemed inappropriate, is illogical.</p></disp-quote><p>Contrary to the Reviewer’s assertion, we do compare our results with three existing methods for describing spatiotemporal variations of brain activity.</p><p>First, Figures 1, 2, and 6 compare the spatiotemporal variations in brain activity between our method and fMRI, the recognized standard for spatiotemporal localization of brain activity. The statistical comparison in Fig 3 is a quantitative demonstration of the similarity of the activation patterns. It is important to note that these data are simultaneous EEG/fMRI in order to eliminate a variety of potential confounds related to differences in experimental conditions.</p><p>Second, Fig 4 (A-D) compares our method with the most reasonable “standard” spatiotemporal localization method for EEG: mapping of fields in the outer cortical regions of the brain detected at the surface electrodes to the surface of the skull. The consistency of both the location and sign of the activity changes detected by both methods in a “standard” attention paradigm is clearly evident. Further confirmation is provided by comparison of our results with simultaneous EEG/fMRI spatial reconstructions (E-F) where the consistency of our reconstructions between subjects is shown in Fig 5.</p><p>Third, measurements from intra-cranial electrodes, the most direct method for validation, are compared with spatiotemporal estimates derived from surface electrodes and shown to be highly correlated.</p><disp-quote content-type="editor-comment"><p>For example, the authors say that “it’s not even clear what one would compare [between the new method and standard approaches]”. How about:</p><p>(1) Qualitatively: compare EEG activation maps. I.e. compare what you would report to a researcher about the brain activity found in a standard experimental task dataset (e.g. their gambling task). People simply want to be able to judge, at least qualitatively on the same data, what the most equivalent output would be from the two approaches. Note, both approaches do not need to be done at the same spatial resolution if there are constraints on this for the comparison to be useful.</p><p>(2) Quantitatively: compare the correlation scores between EEG activation maps and fMRI activation maps</p></disp-quote><p>These comparison were performed and already in the paper.</p><p>(1) Fig 4 compares the results with a standard attention paradigm (data and interpretation from Co-author Dr Martinez, who is an expert in both EEG and attention). Additionally, Fig 12 shows detected regions of increased activity in a well-known brain circuit from an experimental task (’reward’) with data provided by Co-author Dr Krigolson, an expert in reward circuitry.</p><p>(2) Correlation scores between EEG and fMRI are shown in Fig 3.</p><p>(3) Very high correlation between the directly measured field from intra-cranial electrodes in an epilepsy patient and those estimated from only the surface electrodes is shown in Fig 9.</p><disp-quote content-type="editor-comment"><p>There are an awful lot of typos in the new text in the paper. I would expect a paper to have been proof read before submitting.</p></disp-quote><p>We have cleaned up the typos.</p><disp-quote content-type="editor-comment"><p>The abstract claims that there is a “direct comparison with standard state-of-the-art EEG analysis in a well-established attention paradigm”, but no actual comparison appears to have been completed in the paper.</p></disp-quote><p>On the contrary, as mentioned above, Fig 4 compares the results of our method with the state-of-the-art surface spatial mapping analysis, with the state-of-the-art time-frequency analysis, and with the state-of-the-art fMRI analysis</p><disp-quote content-type="editor-comment"><p><bold>Reviewer 2 (Public Review):</bold></p><p>This is a major rewrite of the paper. The authors have improved the discourse vastly.</p><p>There is now a lot of didactics included but they are not always relevant to the paper.</p></disp-quote><p>The technique described in the paper does in fact leverage several novel methods we have developed over the years for analyzing multimodal space-time imaging data. Each of these techniques has been described in detail in separate publications cited in the current paper. However, the Reviewers’ criticisms stated that the methods were non-standard and they were unfamiliar with them. In lieu of the Reviewers’ reading the original publications, we added a significant amount of text indeed intended to be didactic. However, we can assume the Reviewer that nothing presented was irrelevant to the paper. We certainly had no desire to make the paper any longer than it needed to be.</p><disp-quote content-type="editor-comment"><p>The section on Maxwell’s equation does a disservice to the literature in prior work in bioelectromagnetism and does not even address the issues raised in classic text books by Plonsey et al. There is no logical “backwardness” in the literature. They are based on the relative values of constants in biological tissues.</p></disp-quote><p>This criticism highlights the crux of our paper. Contrary to the assertion that we have ignored the work of Plonsey, we have referenced it in the new additional text detailing how we have constructed Maxwell’s Equations appropriate for brain tissue, based on the model suggested by Plonsey that allows the magnetic field temporal variations to be ignored but not the time-dependence electric fields.</p><p>However, the assumption ubiquitous in the vast prior literature of bioelectricity in the brain that the electric field dynamics can be “based on the relative values of constants in biological tissues”, as the Reviewer correctly summarizes, is precisely the problem. Using relative average tissue properties does not take into account the tissue anisotropy necessary to properly account for correct expressions for the electric fields. As our prior publications have demonstrated in detail, taking into account the inhomogeneity and anisotropy of brain tissue in the solution to Maxwell’s Equations is necessary for properly characterizing brain electrical fields, and serves as the foundation of our brain wave theory. This led to the discovery of a new class of brain waves (weakly evanescent transverse cortical waves, WETCOW).</p><p>It is this brain wave model that is used to estimate the dynamic electric field potential from the measurements made by the EEG electrode array. The standard model that ignores these tissue details leads to the ubiquitous “quasi-static approximation” that leads to the conclusion that the EEG signal cannot be spatial reconstructed. It is indeed this critical gap in the existing literature that is the central new idea in the paper.</p><disp-quote content-type="editor-comment"><p>There are reinventions of many standard ideas in terms of physics discourses, like Bayesian theory or PCA etc.</p></disp-quote><p>The discussion of Bayesian theory and PCA is in response to the Reviewer complaint that they were unfamiliar with our entropy field decomposition (EFD) method and the request that we compare it with other “standard” methods. Again, we have published extensively on this method (as referenced in the manuscript) and therefore felt that extensive elaboration was unnecessary. Having been asked to provide such elaboration and then being pilloried for it therefore feels somewhat inappropriate in our view. This is particularly disappointing as the Reviewer claims we are presenting “standard” ideas when in fact the EFD is new general framework we developed to overcome the deficiencies in standard “statistical” and probabilistic data analysis methods that are insufficient for characterizing non-linear, nonperiodic, interacting fields that are the rule, rather than the exception, in complex dynamical systems, such as brain electric fields (or weather, or oceans, or ....).</p><p>The EFD is indeed a Bayesian framework, as this is the fundamental starting point for probability theory, but it is developed in a unique and more general fashion than previous data analysis methods. (Again, this is detailed in several references in the papers bibliography. The Reviewer’s requested that an explanation be included in the present paper, however, so we did so). First, Bayes Theorem is expressed in terms of a field theory that allows an arbitrary number of field orders and coupling terms. This generality comes with a penalty, which is that it’s unclear how to assess the significance of the essentially infinite number of terms. The second feature is the introduction of a method by which to determine the significant number of terms automatically from the data itself, via the our theory of entropy spectrum pathways (ESP), which is also detailed in a cited publication, and which produces ranked spatiotemporal modes from the data. Rather than being “reinventions of many standard ideas” these are novel theoretical and computational methods that are central to the EEG reconstruction method presented in the paper.</p><disp-quote content-type="editor-comment"><p>I think that the paper remains quite opaque and many of the original criticisms remain, especially as they relate to multimodal datasets. The overall algorithm still remains poorly described. benchmarks.</p></disp-quote><p>It’s not clear how to assess the criticisms that the algorithm is poorly described yet there is too much detail provided that is mistakenly assessed as “standard”. Certainly the central wave equations that are estimated from the data are precisely described, so it’s not clear exactly what the Reviewer is referring to.</p><disp-quote content-type="editor-comment"><p>The comparisons to benchmark remain unaddressed and the authors state that they couldn’t get Loreta to work and so aborted that. The figures are largely unaltered, although they have added a few more, and do not clearly depict the ideas. Again, no benchmark comparisons are provided to evaluate the results and the performance in comparison to other benchmarks.</p></disp-quote><p>As we have tried to emphasize in the paper, and in the Response to Reviewers, the standard so-called “source localization” methods are NOT a benchmark, as they are solving an inappropriate model for brain activity. Once again, static dipole “sources” arbitrarily sprinkled on pre-defined regions of interest bear little resemblance to observed brain waves, nor to the dynamic electric field wave equations produced by our brain wave theory derived from a proper solution to Maxwell’s equations in the anisotropic and inhomogeneous complex morphology of the brain.</p><p>The comparison with Loreta was not abandoned because we couldn’t get it to work, but because we could not get it to run under conditions that were remotely similar to whole brain activity described by our theory, or, more importantly, by an rationale theory of dynamic brain activity that might reproduce the exceedingly complex electric field activity observed in numerous neuroscience experiments.</p><p>We take issue with the rather dismissive mention of “a few more” figures that “do not clearly depict the idea” when in fact the figures that have been added have demonstrated additional quantitative validation of the method.</p><p>The following is the authors’ response to the original reviews.</p><disp-quote content-type="editor-comment"><p><bold>Public Reviews:</bold></p><p><bold>Reviewer 1 (Public Review):</bold></p><p>The paper proposes a new source reconstruction method for electroencephalography (EEG) data and claims that it can provide far superior spatial resolution than existing approaches and also superior spatial resolution to fMRI. This primarily stems from abandoning the established quasi-static approximation to Maxwell’s equations.</p><p>The proposed method brings together some very interesting ideas, and the potential impact is high. However, the work does not provide the evaluations expected when validating a new source reconstruction approach. I cannot judge the success or impact of the approach based on the current set of results. This is very important to rectify, especially given that the work is challenging some long- standing and fundamental assumptions made in the field.</p></disp-quote><p>We appreciate the Reviewer’s efforts in reviewing this paper and have included a significant amount of new text to address their concerns.</p><disp-quote content-type="editor-comment"><p>I also find that the clarity of the description of the methods, and how they link to what is shown in the main results hard to follow.</p></disp-quote><p>We have added significantly more detail on the methods, including more accessible explanations of the technical details, and schematic diagrams to visualize the key processing components.</p><disp-quote content-type="editor-comment"><p>I am insufficiently familiar with the intricacies of Maxwell’s equations to assess the validity of the assumptions and the equations being used by WETCOW. The work therefore needs assessing by someone more versed in that area. That said, how do we know that the new terms in Maxwell’s equations, i.e. the time-dependent terms that are normally missing from established quasi-static-based approaches, are large enough to need to be considered? Where is the evidence for this?</p></disp-quote><p>The fact that the time-dependent terms are large enough to be considered is essentially the entire focus of the original papers [7,8]. Time-dependent terms in Maxwell’s equations are generally not important for brain electrodynamics at physiological frequencies for homogeneous tissues, but this is not true for areas with stroung inhomogeneity and ansisotropy.</p><disp-quote content-type="editor-comment"><p>I have not come across EFD, and I am not sure many in the EEG field will have. To require the reader to appreciate the contributions of WETCOW only through the lens of the unfamiliar (and far from trivial) approach of EFD is frustrating. In particular, what impact do the assumptions of WETCOW make compared to the assumptions of EFD on the overall performance of SPECTRE?</p></disp-quote><p>We have added an entire new section in the Appendix that provides a very basic introduction to EFD and relates it to more commonly known methods, such as Fourier and Independent Components Analyses.</p><disp-quote content-type="editor-comment"><p>The paper needs to provide results showing the improvements obtained when WETCOW or EFD are combined with more established and familiar approaches. For example, EFD can be replaced by a first-order vector autoregressive (VAR) model, i.e. y<sub>t</sub> = Ay<sub>t−1</sub> + e<sub>t</sub> (where y<sub>t</sub> is [num<sub>gridpoints</sub> ∗ 1] and A is [num<sub>gridpoints</sub> ∗ num<sub>gridpoints</sub>] of autoregressive parameters).</p></disp-quote><p>The development of EFD, which is independent of WETCOW, stemmed from the necessity of developing a general method for the probabilistic analysis of finitely sampled non-linear interacting fields, which are ubiquitous in measurements of physical systems, of which functional neuroimaging data (fMRI, EEG) are excellent examples. Standard methods (such as VAR) are inadequate in such cases, as discussed in great detail in our EFD publications (e.g., [12,37]). The new appendix on EFD reviews these arguments. It does not make sense to compare EFD with methods which are inappropriate for the data.</p><disp-quote content-type="editor-comment"><p>The authors’ decision not to include any comparisons with established source reconstruction approaches does not make sense to me. They attempt to justify this by saying that the spatial resolution of LORETA would need to be very low compared to the resolution being used in SPECTRE, to avoid compute problems. But how does this stop them from using a spatial resolution typically used by the field that has no compute problems, and comparing with that? This would be very informative. There are also more computationally efficient methods than LORETA that are very popular, such as beamforming or minimum norm.</p></disp-quote><p>he primary reason for not comparing with ’source reconstruction’ (SR) methods is that we are are not doing source reconstruction. Our view of brain activity is that it involves continuous dynamical non-linear interacting fields througout the entire brain. Formulating EEG analysis in terms of reconstructing sources is, in our view, like asking ’what are the point sources of a sea of ocean waves’. It’s just not an appropriate physical model. A pre-chosen limited distribution of static dipoles is just a very bad model for brain activity, so much so that it’s not even clear what one would compare. Because in our view, as manifest in our computational implementation, one needs to have a very high density of computational locations throughout the entire brain, including white matter, and the reconstructed modes are waves whose extent can be across the entire brain. Our comments about the low resolution of computational methods for SR techniques really is expressing the more overarching concern that they are not capable of, or even designed for, detecting time-dependent fields of non-linear interacting waves that exist everywhere througout the brain. Moreover, the SR methods always give some answer, but in our view the initial conditions upon which those methods are based (pre-selected regions of activity with a pre-selected number of ’sources’) is a highly influential but artificial set of strong computational constraints that will almost always provide an answer consist with (i.e., biased toward) the expectations of the person formlating the problem, and is therefore potentially misleading.</p><disp-quote content-type="editor-comment"><p>In short, something like the following methods needs to be compared:</p><p>(1) Full SPECTRE (EFD plus WETCOW)</p><p>(2) WETCOW + VAR or standard (“simple regression”) techniques</p><p>(3) Beamformer/min norm plus EFD</p><p>(4) Beamformer/min norm plus VAR or standard (“simple regression”) techniques</p></disp-quote><p>The reason that no one has previously ever been able to solve the EEG inverse problem is due to the ubiquitous use of methods that are too ’simple’, i.e., are poor physical models of brain activity. We have spent a decade carefully elucidating the details of this statement in numerous highly technical and careful publications. It therefore serves no purpose to return to the use of these ’simple’ methods for comparison. We do agree, however, that a clearer overview of the advantages of our methods is warranted and have added significant additional text in this revision towards that purpose.</p><disp-quote content-type="editor-comment"><p>This would also allow for more illuminating and quantitative comparisons of the real data. For example, a metric of similarity between EEG maps and fMRI can be computed to compare the performance of these methods. At the moment, the fMRI-EEG analysis amounts to just showing fairly similar maps.</p></disp-quote><p>We disagree with this assessment. The correlation coefficient between the spatially localized activation maps is a conservative sufficient statistic for the measure of statistically significant similarity. These numbers were/are reported in the caption to Figure 5, and have now also been moved to, and highlighted in, the main text.</p><disp-quote content-type="editor-comment"><p>There are no results provided on simulated data. Simulations are needed to provide quantitative comparisons of the different methods, to show face validity, and to demonstrate unequivocally the new information that SPECTRE can ’potentially’ provide on real data compared to established methods. The paper ideally needs at least 3 types of simulations, where one thing is changed at a time, e.g.:</p><p>(1) Data simulated using WETCOW plus EFD assumptions</p><p>(2) Data simulated using WETCOW plus e.g. VAR assumptions</p><p>(3) Data simulated using standard lead fields (based on the quasi-static Maxwell solutions) plus e.g. VAR assumptions</p><p>These should be assessed with the multiple methods specified earlier. Crucially the assessment should be quantitative showing the ability to recover the ground truth over multiple realisations of realistic noise. This type of assessment of a new source reconstruction method is the expected standard</p></disp-quote><p>We have now provided results on simulated data, along with a discussion on what entails a meaningful simulation comparison. In short, our original paper on the WETCOW theory included a significant number of simulations of predicted results on several spatial and temporal scales. The most relevant simulation data to compare with the SPECTRE imaging results are the cortical wave loop predicted by WETCOW theory and demonstrated via numerical simulation in a realistic brain model derived from high resolution anatomical (HRA) MRI data. The most relevant data with which to compare these simulations are the SPECTRE recontruction from the data that provides the closest approximation to a “Gold Standard” - reconstructions from intra-cranial EEG (iEEG). We have now included results (new Fig 8) that demonstrate the ability of SPECTRE to reconstruct dynamically evolving cortical wave loops in iEEG data acquired in an epilepsy patient that match with the predicted loop predicted theoretically by WETCOW and demonstrated in realistic numerical simulations.</p><p>The suggested comparison with simple regression techniques serves no purpose, as stated above, since that class of analysis techniques was not designed for non-linear, non-Gaussian, coupled interacting fields predicted by the WETCOW model. The explication of this statement is provided in great detail in our publications on the EFD approach and in the new appendix material provided in this revision. The suggested simulation of the dipole (i.e., quasi-static) model of brain activity also serves no purpose, as our WETCOW papers have demonstrated in great detail that is is not a reasonable model for dynamic brain activity.</p><disp-quote content-type="editor-comment"><p><bold>Reviewer 2 (Public Review):</bold></p><p>Strengths:</p><p>If true and convincing, the proposed theoretical framework and reconstruction algorithm can revolutionize the use of EEG source reconstructions.</p><p>Weaknesses:</p><p>There is very little actual information in the paper about either the forward model or the novel method of reconstruction. Only citations to prior work by the authors are cited with absolutely no benchmark comparisons, making the manuscript difficult to read and interpret in isolation from their prior body of work.</p></disp-quote><p>We have now added a significant amount of material detailing the forward model, our solution to the inverse problem, and the method of reconstruction, in order to remedy this deficit in the previous version of the paper.</p><disp-quote content-type="editor-comment"><p><bold>Recommendations for the authors:</bold></p><p><bold>Reviewer 1 (Recommendations):</bold></p><p>It is not at all clear from the main text (section 3.1) and the caption, what is being shown in the activity patterns in Figures 1 and 2. What frequency bands and time points etc? How are the values shown in the figures calculated from the equations in the methods?</p></disp-quote><p>We have added detailed information on the frequency bands reconstructed and the activity pattern generation and meaning. Additional information on the simultaneous EEG/fMRI acquisition details has been added to the Appendix.</p><disp-quote content-type="editor-comment"><p>How have the activity maps been thresholded? Where are the color bars in Figures 1 and 2?</p></disp-quote><p>We have now included that information in new versions of the figures. In addition, the quantitative comparison between fMRI and EEG are presented is now presented in a new Figure 2 (now Figure 3).</p><disp-quote content-type="editor-comment"><p>P30 “This term is ignored in the current paper”. Why is this term ignored, but other (time-dependent) terms are not?</p></disp-quote><p>These terms are ignored because they represent higher order terms that complicate the processing (and intepretation) but do not substatially change the main results. A note to this effect has been added to the text.</p><disp-quote content-type="editor-comment"><p>The concepts and equations in the EFD section are not very accessible (e.g. to someone unfamiliar with IFT).</p></disp-quote><p>We have added a lengthy general and more accessible description of the EFD method in the Appendix.</p><disp-quote content-type="editor-comment"><p>Variables in equation 1, and the following equation, are not always defined in a clear, accessible manner. What is <inline-formula><mml:math id="sa3m1"><mml:mstyle displaystyle="true" scriptlevel="0"><mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mo>,</mml:mo><mml:msup><mml:mi>δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msup><mml:mo>,</mml:mo><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mi>ω</mml:mi><mml:mo>,</mml:mo><mml:msup><mml:mrow><mml:mover><mml:mi>F</mml:mi><mml:mo stretchy="false">^</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi>ω</mml:mi></mml:mrow></mml:msup><mml:mo>,</mml:mo><mml:mi>ϵ</mml:mi></mml:mrow></mml:mstyle></mml:math></inline-formula>?</p></disp-quote><p>We have added additional information on how Eqn 1 (now Eqn 3) is derived, and the variables therein.</p><disp-quote content-type="editor-comment"><p>In the EFD section, what do you mean conceptually by α, i.e. “the coupled parameters α”?</p></disp-quote><p>This sentence has been eliminated, as it was superfluous and confusing.</p><disp-quote content-type="editor-comment"><p>How are the EFD and WETCOW sections linked mathematically? What is ψ (in eqn 2) linked to in the WETCOW section (presumably ϕ<sub>ω</sub>?) ?</p></disp-quote><p>We have added more introductory detail at the beginning of the Results to describe the WETCOW theory and how this is related to the inverse problem for EEG.</p><disp-quote content-type="editor-comment"><p>What is the difference between data d and signal s in section 6.1.3? How are they related?</p></disp-quote><p>We have added a much more detailed Appendix A where this (and other) details are provided.</p><disp-quote content-type="editor-comment"><p>What assumptions have been made to get the form for the information Hamiltonian in eqn3?</p></disp-quote><p>Eq 3 (now Eqn A.5) is actually very general. The approximations come in when constructing the interaction Hamiltonian H<sub>i</sub>.</p><disp-quote content-type="editor-comment"><p>P33 “using coupling between different spatio-temporal points that is available from the data itself” I do not understand what is meant by this.</p></disp-quote><p>This was a poorly worded sentence, but this section has now been replaced by Appendix A, which now contains the sentence that prior information “is contained within the data itself”. This refers to the fact that the prior information consists of correlations in the data, rather than some other measurements independent of the original data. This point is emphasized because in many Bayesian application, prior information consists of knowledge of some quantity that were acquired independently from the data at hand (e.g., mean values from previous experiments)</p><disp-quote content-type="editor-comment"><p><bold>Reviewer 2 (Recommendations):</bold></p><p>Abstract</p><p>The first part presents validation from simultaneous EEG/fMRI data, iEEG data, and comparisons with standard EEG analyses of an attention paradigm. Exactly what constitutes adequate validation or what metrics were used to assess performance is surprisingly absent.</p><p>Subsequently, the manuscript examines a large cohort of subjects performing a gambling task and engaging in reward circuits. The claim is that this method offers an alternative to fMRI.</p><p>Introduction</p><p>Provocative statements require strong backing and evidence. In the first paragraph, the “quasi-static” assumption which is dominant in the field of EEG and MEG imaging is questioned with some classic citations that support this assumption. Instead of delving into why exactly the assumption cannot be relaxed, the authors claim that because the assumption was proved with average tissue properties rather than exact, it is wrong. This does not make sense. Citations to the WETCOW papers are insufficient to question the quasi-static assumption.</p></disp-quote><p>The introduction purports to validate a novel theory and inverse modeling method but poorly outlines the exact foundations of both the theory (WETCOW) and the inverse modeling (SPECTRE) work.</p><p>We have added a new introductory subsection (“A physical theory of brain waves”) to the Results section that provides a brief overview of the foundations of the WETCOW theory and an explicit description of why the quasi-static approximation can be abandoned. We have expanded the subsequent subsection (“Solution to the inverse EEG problem”) to more clearly detail the inverse modeling (SPECTRE) method.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Figure 1 supposedly is a validation of this promising novel theoretical approach that defies the existing body of literature in this field. Shockingly, a single subject data is shown in a qualitative manner with absolutely no quantitative comparison anywhere to be found in the manuscript. While there are similarities, there are also differences in reconstructions. What to make out of these discrepancies? Are there distortions that may occur with SPECTRE reconstructions? What are its tradeoffs? How does it deal with noise in the data?</p></disp-quote><p>It is certainly not the case that there are no quantitative comparisons. Correlation coefficients, which are the sufficient statistics for comparison of activation regions, are given in Figure 5 for very specific activation regions. Figure 9 (now Figure 11) shows a t-statistic demonstrating the very high significance of the comparison between multiple subjects. And we have now added a new Figure 7 demonstrating the strongly correlated estimates for full vs surface intra-cranial EEG reconstructions. To make this more clear, we have added a new section “Statistical Significance of the Results”.</p><p>We note that a discussion of the discrepancies between fMRI and EEG was already presented in the Supplementary Material. Therein we discuss the main point that fMRI and EEG are measuring different physical quantities and so should not be expected to be identical. We also highlight the fact that fMRI is prone to significant geometrical distortions for magnetic field inhomogeities, and to physiological noise. To provide more visibility for this important issue, we have moved this text into the Discussion section.</p><p>We do note that geometric distortions in fMRI data due to suboptimal acquisitions and corrections is all too common. This, coupled with the paucity of open source simultaneous fMRI-EEG data, made it difficult to find good data for comparison. The data on which we performed the quantitative statistical comparison between fMRI and EEG (Fig 5) was collected by co-author Dr Martinez, and was of the highest quality and therefore sufficient for comparison. The data used in Fig 1 and 2 was a well publicized open source dataset but had significant fMRI distortions that made quantitative comparison (i.e., correlation coefficents between subregions in the Harvard-Oxford atlas) suboptimal. Nevertheless, we wanted to demonstrate the method in more than one source, and feel that visual similarity is a reasonble measure for this data.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Figure 2 Are the sample slices being shown? How to address discrepancies? How to assume that these are validations when there are such a level of discrepancies?</p></disp-quote><p>It’s not clear what “sample slices” means. The issue of discrepancies is addressed in the response to the previous query.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Figure 3 Similar arguments can be made for Figure 3. Here too, a comparison with source localization benchmarks is warranted because many papers have examined similar attention data.</p></disp-quote><p>Regarding the fMRI/EEG comparison, these data are compared quantitatively in the text and in Figure 5.</p><p>Regarding the suggestion to perform standard ’source localization’ analysis, see responses to Reviewer 1.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Figure 4 While there is consistency across 5 subjects, there are also subtle and not-so-subtle differences.</p><p>What to make out of them?</p></disp-quote><p>Discrepancies in activations patterns between individuals is a complex neuroscience question that we feel is well beyond the scope of this paper.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Figures 5 &amp; 6 Figure 5 is also a qualitative figure from two subjects with no appropriate quantification of results across subjects. The same is true for Figure 6.</p></disp-quote><p>On the contrary, Figure 5 contains a quantitative comparison, which is now also described in the text. A quantitative comparison for the epilepsy data in Fig 6 (and C.4-C.6) is now shown in Fig 7.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Given the absence of appropriate “validation” of the proposed model and method, it is unclear how much one can trust results in Section 4.</p></disp-quote><p>We believe that the quantitative comparisons extant in the original text (and apparently missed by the Reviewer) along with the additional quantitative comparisons are sufficient to merit trust in Section 4.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>What are the thresholds used in maps for Figure 7? Was correction for multiple comparisons performed? The final arguments at the end of section 4 do not make sense. Is the claim that all results of reconstructions from SPECTRE shown here are significant with no reason for multiple comparison corrections to control for false positives? Why so?</p></disp-quote><p>We agree that the last line in Section 4 is misleading and have removed it.</p><disp-quote content-type="editor-comment"><p>Section 3.2 Validation with fMRI</p><p>Discussion is woefully inadequate in addition to the inconclusive findings presented here.</p></disp-quote><p>We have added a significant amount of text to the Discussion to address the points brought up by the Reviewer. And, contrary to the comments of this Reviewer, we believe the statistically significant results presented are not “inconclusive”.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>This reviewer had an incredibly difficult time understanding the inverse model solution. Even though this has been described in a prior publication by the authors, it is important and imperative that all details be provided here to make the current manuscript complete. The notation itself is so nonstandard. What is Σ<sup>ij</sup>, δ<sup>ij</sup>? Where is the reference for equation (1)? What about the equation for <sup>ˆ</sup>(R)? There are very few details provided on the exact implementation details for the Fourier-space pseudo-spectral approach. What are the dimensions of the problem involved? How were different tissue compartments etc. handled? Equation 1 holds for the entire volume but the measurements are only made on the surface. How was this handled? What is the WETCOW brain wave model? I don’t see any entropy term defined anywhere - where is it?</p></disp-quote><p>We have added more detail on the theoretical and numerical aspects of the inverse problem in two new subsections “Theory” and “Numerical Implementation” in the new section “Solution to the inverse EEG problem”.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>So, how can one understand even at a high conceptual level what is being done with SPECTRE?</p></disp-quote><p>We have added a new subsection “Summary of SPECTRE” that provides a high conceptual level overview of the SPECTRE method outlined in the preceding sections.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>In order to understand what was being presented here, it required the reader to go on a tour of the many publications by the authors where the difficulty in understanding what they actually did in terms of inverse modeling remains highly obscure and presents a huge problem for replicability or reproducibility of the current work.</p></disp-quote><p>We have now included more basic material from our previous papers, and simplified the presentation to be more accessible. In particular, we have now moved the key aspects of the theoretic and numerical methods, in a more readable form, from the Supplementary Material to the main text, and added a new Appendix that provides a more intuitive and accessible overview of our estimation procedures.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>How were conductivity values for different tissue types assigned? Is there an assumption that the conductivity tensor is the same as the diffusion tensor? What does it mean that “in the present study only HRA data were used in the estimation procedure?” Does that mean that diffusion MRI data was not used? What is SYMREG? If this refers to the MRM paper from the authors in 2018, that paper does not include EEG data at all. So, things are unclear here.</p></disp-quote><p>The conductivity tensor is not exactly the same as the diffusion tensor in brain tissues, but they are closely related. While both tensors describe transport properties in brain tissue, they represent different physical processes. The conductivity tensor is often assumed to share the same eigenvectors as the diffusion tensor. There is a strong linear relationship between the conductivity and diffusion tensor eigenvalues, as supported by theoretical models and experimental measurements. For the current study we only used the anatomical data for estimatition and assignment of different tissue types and no diffusion MRI data was used. To register between different modalities, including MNI, HRA, function MRI, etc., and to transform the tissue assignment into an appropriate space we used the SYMREG registration method. A comment to the effect has been added to the text.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>How can reconstructed volumetric time-series of potential be thought of as the EM equivalent of an fMRI dataset? This sentence doesn’t make sense.</p></disp-quote><p>This sentence indeed did not make sense and has been removed.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>Typical Bayesian inference does not include entropy terms, and entropy estimation doesn’t always lend to computing full posterior distributions. What is an “entropy spectrum pathway”? What is µ∗? Why can’t things be made clear to the reader, instead of incredible jargon used here? How does section 6.1.2 relate back to the previous section?</p></disp-quote><p>That is correct that Bayesian inference typically does not include entropy terms. We believe that their introduction via the theory of entropy spectrum pathways (ESP) is a significant advance in Bayesian estimation as it provides highly relevent prior information from within the data itself (and therefore always available in spatiotemporal data) that facilitates a practical methodology for the analysis of complex non-linear dynamical system, as contained in the entropy field decomposition (EFD).</p><p>Section 6.1.3 has now been replaced by a new Appendix A that discusses ESP in a much more intuitive and conceptual manner.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>Section 6.1.3 describes entropy field decomposition in very general terms. What is “non-period”? This section is incomprehensible. Without reference to exactly where in the process this procedure is deployed it is extremely difficult to follow. There seems to be an abuse of notation of using ϕ for eigenvectors in equation (5) and potentials earlier. How do equations 9-11 relate back to the original problem being solved in section 6.1.1? What are multiple modalities being described here that require JESTER?</p></disp-quote><p>Section 6.1.3 has now been replaced by a new Appendix A that covers this material in a much more intuitive and conceptual manner.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>Section 6.3 discusses source localization methods. While most forward lead-field models assume quasistatic approximations to Maxwell’s equations, these are perfectly valid for the frequency content of brain activity being measured with EEG or MEG. Even with quasi-static lead fields, the solutions can have frequency dependence due to the data having frequency dependence. Solutions do not have to be insensitive to detailed spatially variable electrical properties of the tissues. For instance, if a FEM model was used to compute the forward model, this model will indeed be sensitive to the spatially variable and anisotropic electrical properties. This issue is not even acknowledged.</p></disp-quote><p>The frequency dependence of the tissue properties is not the issue. Our theoretical work demonstrates that taking into account the anisotropy and inhomogeneity of the tissue is necessary in order to derive the existence of the weakly evanescent transverse cortical waves (WETCOW) that SPECTRE is detecting. We have added more details about the WETCOW model in the new Section “A physical theory of brain wave” to emphasize this point.</p><disp-quote content-type="editor-comment"><p>Supplementary Materials</p><p>Arguments to disambiguate deep vs shallow sources can be achieved with some but not all source localization algorithms and do not require a non-quasi-static formulation. LORETA is not even the main standard algorithm for comparison. It is disappointing that there are no comparisons to source localization and that this is dismissed away due to some coding issues.</p></disp-quote><p>Again, we are not doing ’source localization’. The concept of localized dipole sources is anathema to our brain wave model, and so in our view comparing SPECTRE to such methods only propagates the misleading idea that they are doing the same thing. So they are definitely not dismissed due to coding issues. However, because of repeated requests to do compare SPECTRE with such methods, we attempted to run a standard source localization method with parameters that would at least provide the closest approximation to what we were doing. This attempt highlighted a serious computational issue in source localization methods that is a direct consequence of the fact that they are not attempting to do what SPECTRE is doing - describing a time-varying wave field, in the technical definition of a ’field’ as an object that has a value at every point in space-time.</p></body></sub-article></article>