<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN"  "JATS-archivearticle1-3-mathml3.dtd"><article xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.3"><front><journal-meta><journal-id journal-id-type="nlm-ta">elife</journal-id><journal-id journal-id-type="publisher-id">eLife</journal-id><journal-title-group><journal-title>eLife</journal-title></journal-title-group><issn publication-format="electronic" pub-type="epub">2050-084X</issn><publisher><publisher-name>eLife Sciences Publications, Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">101043</article-id><article-id pub-id-type="doi">10.7554/eLife.101043</article-id><article-id pub-id-type="doi" specific-use="version">10.7554/eLife.101043.3</article-id><article-version article-version-type="publication-state">version of record</article-version><article-categories><subj-group subj-group-type="display-channel"><subject>Research Article</subject></subj-group><subj-group subj-group-type="heading"><subject>Neuroscience</subject></subj-group></article-categories><title-group><article-title>Synaptic cell adhesion molecule <italic>Cdh6</italic> identifies a class of sensory neurons with novel functions in colonic motility</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Gomez-Frittelli</surname><given-names>Julieta</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0001-8859-9270</contrib-id><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="other" rid="fund1"/><xref ref-type="fn" rid="con1"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Devienne</surname><given-names>Gabrielle Frederique</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-2204-8043</contrib-id><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="fn" rid="con2"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Travis</surname><given-names>Lee</given-names></name><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con3"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Kyloh</surname><given-names>Melinda A</given-names></name><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con4"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Duan</surname><given-names>Xin</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0001-5260-8972</contrib-id><xref ref-type="aff" rid="aff5">5</xref><xref ref-type="other" rid="fund2"/><xref ref-type="fn" rid="con5"/><xref ref-type="fn" rid="conf2"/></contrib><contrib contrib-type="author"><name><surname>Hibberd</surname><given-names>Tim J</given-names></name><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con6"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Spencer</surname><given-names>Nick J</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0003-2190-5303</contrib-id><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="other" rid="fund3"/><xref ref-type="other" rid="fund4"/><xref ref-type="fn" rid="con7"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Huguenard</surname><given-names>John R</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-6950-1191</contrib-id><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="other" rid="fund5"/><xref ref-type="fn" rid="con8"/><xref ref-type="fn" rid="conf2"/></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-2893-1793</contrib-id><email>jukalts@stanford.edu</email><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff6">6</xref><xref ref-type="fn" rid="con9"/><xref ref-type="fn" rid="conf1"/></contrib><aff id="aff1"><label>1</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/00f54p054</institution-id><institution>Department of Chemical Engineering, Stanford University</institution></institution-wrap><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff><aff id="aff2"><label>2</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/00f54p054</institution-id><institution>Wu Tsai Neurosciences Institute, Stanford University</institution></institution-wrap><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff><aff id="aff3"><label>3</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/00f54p054</institution-id><institution>Department of Neurology &amp; Neurological Sciences, Stanford University</institution></institution-wrap><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff><aff id="aff4"><label>4</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/01kpzv902</institution-id><institution>College of Medicine and Public Health, Flinders Health &amp; Medical Research Institute, Flinders University</institution></institution-wrap><addr-line><named-content content-type="city">Adelaide</named-content></addr-line><country>Australia</country></aff><aff id="aff5"><label>5</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/043mz5j54</institution-id><institution>Department of Ophthalmology, School of Medicine, University of California San Francisco</institution></institution-wrap><addr-line><named-content content-type="city">San Francisco</named-content></addr-line><country>United States</country></aff><aff id="aff6"><label>6</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/00f54p054</institution-id><institution>Department of Neurosurgery, Stanford University School of Medicine</institution></institution-wrap><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff></contrib-group><contrib-group content-type="section"><contrib contrib-type="editor"><name><surname>Cardona</surname><given-names>Albert</given-names></name><role>Reviewing Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/013meh722</institution-id><institution>University of Cambridge</institution></institution-wrap><country>United Kingdom</country></aff></contrib><contrib contrib-type="senior_editor"><name><surname>Cardona</surname><given-names>Albert</given-names></name><role>Senior Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/013meh722</institution-id><institution>University of Cambridge</institution></institution-wrap><country>United Kingdom</country></aff></contrib></contrib-group><pub-date publication-format="electronic" date-type="publication"><day>07</day><month>04</month><year>2025</year></pub-date><volume>13</volume><elocation-id>RP101043</elocation-id><history><date date-type="sent-for-review" iso-8601-date="2024-08-06"><day>06</day><month>08</month><year>2024</year></date></history><pub-history><event><event-desc>This manuscript was published as a preprint.</event-desc><date date-type="preprint" iso-8601-date="2024-08-08"><day>08</day><month>08</month><year>2024</year></date><self-uri content-type="preprint" xlink:href="https://doi.org/10.1101/2024.08.06.606748"/></event><event><event-desc>This manuscript was published as a reviewed preprint.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2024-11-21"><day>21</day><month>11</month><year>2024</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.101043.1"/></event><event><event-desc>The reviewed preprint was revised.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2025-02-21"><day>21</day><month>02</month><year>2025</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.101043.2"/></event></pub-history><permissions><copyright-statement>© 2024, Gomez-Frittelli et al</copyright-statement><copyright-year>2024</copyright-year><copyright-holder>Gomez-Frittelli et al</copyright-holder><ali:free_to_read/><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><ali:license_ref>http://creativecommons.org/licenses/by/4.0/</ali:license_ref><license-p>This article is distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use and redistribution provided that the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="elife-101043-v2.pdf"/><self-uri content-type="figures-pdf" xlink:href="elife-101043-figures-v2.pdf"/><abstract><p>Intrinsic sensory neurons are an essential part of the enteric nervous system (ENS) and play a crucial role in gastrointestinal tract motility and digestion. Neuronal subtypes in the ENS have been distinguished by their electrophysiological properties, morphology, and expression of characteristic markers, notably neurotransmitters and neuropeptides. Here, we investigated synaptic cell adhesion molecules as novel cell-type markers in the ENS. Our work identifies two type II classic cadherins, <italic>Cdh6</italic> and <italic>Cdh8,</italic> specific to sensory neurons in the mouse colon. We show that <italic>Cdh6+</italic> neurons demonstrate all other distinguishing classifications of enteric sensory neurons including marker expression of <italic>Calcb</italic> and <italic>Nmu</italic>, Dogiel type II morphology and AH-type electrophysiology and <italic>I<sub>H</sub></italic> current. Optogenetic activation of <italic>Cdh6+</italic> sensory neurons in distal colon evokes retrograde colonic motor complexes (CMCs), while pharmacologic blockade of rhythmicity-associated current <italic>I<sub>H</sub></italic> disrupts the spontaneous generation of CMCs. These findings provide the first demonstration of selective activation of a single neurochemical and functional class of enteric neurons and demonstrate a functional and critical role for sensory neurons in the generation of CMCs.</p></abstract><kwd-group kwd-group-type="author-keywords"><kwd>enteric nervous system</kwd><kwd>sensory neurons</kwd><kwd>synaptic cell adhesion molecule</kwd><kwd>cadherin-6</kwd><kwd>colonic motor complexes</kwd><kwd>mice</kwd></kwd-group><kwd-group kwd-group-type="research-organism"><title>Research organism</title><kwd>Mouse</kwd></kwd-group><funding-group><award-group id="fund1"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000057</institution-id><institution>National Institute of General Medical Sciences</institution></institution-wrap></funding-source><award-id>T32GM120007</award-id><principal-award-recipient><name><surname>Gomez-Frittelli</surname><given-names>Julieta</given-names></name></principal-award-recipient></award-group><award-group id="fund2"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01 EY030138</award-id><principal-award-recipient><name><surname>Duan</surname><given-names>Xin</given-names></name></principal-award-recipient></award-group><award-group id="fund3"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/501100000925</institution-id><institution>National Health and Medical Research Council</institution></institution-wrap></funding-source><award-id>1156416</award-id><principal-award-recipient><name><surname>Spencer</surname><given-names>Nick J</given-names></name></principal-award-recipient></award-group><award-group id="fund4"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/501100000923</institution-id><institution>Australian Research Council</institution></institution-wrap></funding-source><award-id>DP220100070</award-id><principal-award-recipient><name><surname>Spencer</surname><given-names>Nick J</given-names></name></principal-award-recipient></award-group><award-group id="fund5"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000065</institution-id><institution>National Institute of Neurological Disorders and Stroke</institution></institution-wrap></funding-source><award-id>5R01NS34774</award-id><principal-award-recipient><name><surname>Huguenard</surname><given-names>John R</given-names></name></principal-award-recipient></award-group><award-group id="fund6"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100014373</institution-id><institution>Wu Tsai Neurosciences Institute, Stanford University</institution></institution-wrap></funding-source><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><award-group id="fund7"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100006521</institution-id><institution>Department of Neurosurgery, Stanford University School of Medicine</institution></institution-wrap></funding-source><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><award-group id="fund8"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R21 HD110950</award-id><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><award-group id="fund9"><funding-source><institution-wrap><institution>The Firmenich Foundation</institution></institution-wrap></funding-source><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><award-group id="fund10"><funding-source><institution-wrap><institution>The Carol and Eugene Ludwig Family Foundation</institution></institution-wrap></funding-source><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><award-group id="fund11"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>P30AG066515</award-id><principal-award-recipient><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name></principal-award-recipient></award-group><funding-statement>The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.</funding-statement></funding-group><custom-meta-group><custom-meta specific-use="meta-only"><meta-name>Author impact statement</meta-name><meta-value>Cadherin-6 (Cdh6) marks gut-intrinsic sensory neurons, and optogenetic activation of Cdh6+ sensory neurons is sufficient to evoke colonic motor complexes.</meta-value></custom-meta><custom-meta specific-use="meta-only"><meta-name>publishing-route</meta-name><meta-value>prc</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="s1" sec-type="intro"><title>Introduction</title><p>Sensory signaling within the gastrointestinal (GI) tract plays a critical role in the autonomous regulation of digestion. The GI tract is the only internal organ system containing its own sensory neurons. Intrinsic primary afferent neurons (IPANs) detect relevant stimuli through chemo- and mechano-sensation and direct appropriate GI functions via downstream components of the enteric nervous system (ENS), including ascending and descending interneurons, and excitatory and inhibitory motor neurons (<xref ref-type="bibr" rid="bib8">Fung and Vanden Berghe, 2020</xref>). These neuronal subtypes have begun to be distinguished morphologically, electrophysiologically, and by marker expression, classically especially of neurotransmitters (<xref ref-type="bibr" rid="bib34">Nurgali et al., 2004</xref>; <xref ref-type="bibr" rid="bib39">Qu et al., 2008</xref>), and together this information has provided an opening to characterize individual neuron subtype function within the GI tract.</p><p>Synaptic cell adhesion molecules define neuronal subtype connectivity within many regions of the CNS. Type II cadherins are a family of synaptic cell adhesion molecules with combinatorial expression in multiple neural circuits of the CNS, including retina, limbic, olivonuclear, and auditory projection systems (<xref ref-type="bibr" rid="bib42">Suzuki et al., 1997</xref>; <xref ref-type="bibr" rid="bib5">Duan et al., 2018</xref>; <xref ref-type="bibr" rid="bib19">Honjo et al., 2000</xref>). Type II cadherins bind homophilically by expression of the same cadherin at both the pre- and post-synapse, which stabilizes developing synapses between correct partners while incorrect synapses are pruned away (<xref ref-type="bibr" rid="bib46">Yamagata et al., 2018</xref>; <xref ref-type="bibr" rid="bib2">Basu et al., 2015</xref>). Recent RNA-Seq studies of human and mouse ENS have identified synaptic cell adhesion molecules, including type II cadherins, expressed in enteric neuronal subtypes (<xref ref-type="bibr" rid="bib31">May-Zhang et al., 2021</xref>; <xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). However, the specificity of their expression has yet to be harnessed to assess neuronal subtype-specific function in the ENS.</p><p>Here, we identify type II cadherin, <italic>Cdh6</italic>, as a novel marker for IPANs of the colonic ENS. We demonstrate the sensory identity of <italic>Cdh6</italic> neurons by immunohistochemical, morphological, and neurophysiological classification. <italic>Cdh6</italic> neurons express IPAN markers <italic>Calcb</italic> and <italic>Nmu</italic>. Sparse labeling of individual IPANs reveals they project mainly circumferentially and branch extensively in myenteric ganglia. Whole-cell patch-clamp recordings of sensory neurons in situ reveal action potential (AP) slow afterhyperpolarizations characteristic of IPANs, and hyperpolarization-activated cationic current (<italic>I<sub>H</sub></italic>), a rhythmicity indicator in thalamocortical and other systems (<xref ref-type="bibr" rid="bib43">Wahl-Schott and Biel, 2009</xref>). Using a <italic>Cdh6</italic> genetic mouse model, we show that optogenetic activation of distal colon IPANs is sufficient to evoke retrograde colonic motor complexes (CMCs), while pharmacologic block of <italic>I<sub>H</sub></italic> in IPANs disrupts colonic rhythmicity and reversibly abolishes spontaneous CMCs.</p></sec><sec id="s2" sec-type="results"><title>Results</title><sec id="s2-1"><title>Expression of the type II classic cadherin <italic>Cdh6</italic> in colonic IPANs</title><p>To identify cadherins expressed in enteric neuronal subtypes in mouse, we screened recently published RNA-Seq data (<xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>) for classic type II cadherin expression. <italic>Cdh6</italic> and <italic>Cdh8</italic> appeared to be restricted to IPAN subsets in both small intestine and colon (<xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). <italic>Cdh9</italic> was previously identified in a separate population of IPANs in the small intestine (<xref ref-type="bibr" rid="bib31">May-Zhang et al., 2021</xref>; <xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). We validated <italic>Cdh6</italic> and <italic>Cdh8</italic> expression by RNAscope in situ hybridization in the myenteric plexus, which contains the enteric motility circuitry. <italic>Cdh6</italic> mRNA was expressed in 14.7 ± 0.8% of myenteric neurons in small intestine (jejunum) and in 6.8 ± 0.3% of myenteric neurons in distal colon (mean ± SEM) (<xref ref-type="fig" rid="fig1">Figure 1A–C</xref>). <italic>Cdh8</italic> was almost exclusively co-expressed in <italic>Cdh6+</italic> neurons, although at a much lower level of detection (<xref ref-type="fig" rid="fig1">Figure 1D–H</xref>). We therefore focused our further analysis on <italic>Cdh6+</italic> neurons.</p><fig id="fig1" position="float"><label>Figure 1.</label><caption><title><italic>Cdh6</italic> expression overlaps with intrinsic primary afferent neuron (IPAN) markers <italic>Calcb</italic> and <italic>Nmu</italic>.</title><p>(<bold>A, B</bold>) Representative images of jejunum (<bold>A</bold>) and distal colon (<bold>B</bold>) myenteric plexus labeled with HuC/D (IHC) (blue) and <italic>Cdh6</italic> (RNA) (red). (<bold>C</bold>) Proportion of total HuC/D neurons positive for <italic>Cdh6</italic> (jejunum, n=9; distal colon, n=9). (<bold>D, E</bold>) As in (<bold>A, B</bold>) for HuC/D (IHC) (blue), <italic>Cdh6</italic> (RNA) (red), and <italic>Cdh8</italic> (RNA) (green). (<bold>F</bold>) Proportion of <italic>Cdh6+</italic> neurons positive for <italic>Cdh8</italic> (jejunum, n=8; distal colon, n=8). (<bold>G</bold>) Proportion of <italic>Cdh8+</italic> neurons positive for <italic>Cdh6</italic> (jejunum, n=8; distal colon, n=8). (<bold>H</bold>) Proportion of total HuC/D neurons positive for <italic>Cdh8</italic> (jejunum, n=8; distal colon, n=8). (<bold>I, J</bold>) As in (<bold>A, B</bold>) for HuC/D (IHC) (blue), <italic>Calcb</italic> (RNA) (red), and <italic>Nmu</italic> (RNA) (green). (<bold>K</bold>) Proportion of <italic>Nmu+</italic> neurons positive for <italic>Calcb</italic> (jejunum, n=5; distal colon, n=5). (<bold>L</bold>) Proportion of <italic>Calcb+</italic> neurons positive for <italic>Nmu</italic> (jejunum, n=5; distal colon, n=5). (<bold>M, N</bold>) As in (<bold>A, B</bold>) for HuC/D (IHC) (blue), <italic>Cdh6</italic> (RNA) (red), and <italic>Nmu</italic> (RNA) (green). (<bold>O</bold>) Proportion of <italic>Cdh6+</italic> neurons positive for <italic>Nmu</italic> (jejunum, n=7; distal colon, n=8). (<bold>P</bold>) Proportion of <italic>Nmu+</italic> neurons positive for <italic>Cdh6</italic> (jejunum, n=7; distal colon, n=8). (<bold>Q</bold>) Proportion of total HuC/D neurons positive for <italic>Nmu</italic> (jejunum, n=7; distal colon, n=8). (<bold>R, S</bold>) As in (<bold>A, B</bold>) for HuC/D (IHC) (blue), <italic>Cdh6</italic> (RNA) (red), and <italic>Calcb</italic> (RNA) (green). (<bold>T</bold>) Proportion of <italic>Cdh6+</italic> neurons positive for <italic>Calcb</italic> (jejunum, n=9; distal colon, n=7). (<bold>U</bold>) Proportion of <italic>Calcb+</italic> neurons positive for <italic>Cdh6</italic> (jejunum, n=9; distal colon, n=7). (<bold>V</bold>) Proportion of total HuC/D neurons positive for <italic>Calcb</italic> (jejunum, n=9; distal colon, n=9). (<bold>W, X</bold>) Schematic of marker overlap in jejunum (<bold>W</bold>) and distal colon (<bold>X</bold>). Scale bar represents 100 μm for (<bold>A, B, I, J, M, N, R, S</bold>), 50 μm for (<bold>D, E</bold>). All charts (mean ± SEM). *p&lt;0.05; **p&lt;0.01; ***p&lt;0.001; ****p&lt;0.0001.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig1-v2.tif"/></fig><p>To confirm IPAN identity of <italic>Cdh6+</italic> neurons, we first established the differential expression of two putative and broadly used markers of IPANs, <italic>Calcb</italic> and <italic>Nmu</italic> (<xref ref-type="bibr" rid="bib39">Qu et al., 2008</xref>; <xref ref-type="bibr" rid="bib31">May-Zhang et al., 2021</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). We found that all <italic>Nmu+</italic> neurons co-express <italic>Calcb</italic> in both jejunum and distal colon (<xref ref-type="fig" rid="fig1">Figure 1I–K</xref>). In contrast, only about half of <italic>Calcb+</italic> neurons in the jejunum and two-thirds in the distal colon co-express <italic>Nmu</italic> (<xref ref-type="fig" rid="fig1">Figure 1L</xref>).</p><p>We next assessed co-expression of <italic>Cdh6</italic> with <italic>Calcb</italic> and <italic>Nmu</italic>. In the jejunum, we found that nearly all <italic>Nmu+</italic> neurons and <italic>Calcb+</italic> neurons express <italic>Cdh6</italic> (<xref ref-type="fig" rid="fig1">Figure 1P and U</xref>), though only about three-quarters of all <italic>Cdh6+</italic> neurons express <italic>Calcb</italic> and only about half express <italic>Nmu</italic> (<xref ref-type="fig" rid="fig1">Figure 1O and T</xref>). In contrast, in the distal colon, while <italic>Cdh6</italic> is only expressed in about two-thirds of all <italic>Calcb+</italic> neurons (<xref ref-type="fig" rid="fig1">Figure 1U</xref>), nearly all <italic>Cdh6+</italic> neurons express <italic>Nmu</italic> and <italic>Calcb</italic> (<xref ref-type="fig" rid="fig1">Figure 1O and T</xref>). Taken together, our data show that in the myenteric plexus, <italic>Cdh6</italic> is expressed exclusively in <italic>Calcb+/Nmu+</italic> IPANs in the mouse distal colon (<xref ref-type="fig" rid="fig1">Figure 1W and X</xref>).</p></sec><sec id="s2-2"><title>Mouse colonic IPANs display AH-type electrophysiology and <italic>I<sub>H</sub></italic> current</title><p>We next assessed the electrophysiological properties of <italic>Cdh6+</italic> IPANs. We focused our analysis on the colon, and for ease of neuron tracing, took advantage of a genetic strategy to sparsely label <italic>Cdh6+</italic> neurons. Previous studies of Hb9:GFP transgenic mice have shown that due to the inserted transgene’s proximity to <italic>Cdh6</italic>, <italic>Cdh6+</italic> neurons can express eGFP (<xref ref-type="bibr" rid="bib26">Laboulaye et al., 2018</xref>). Hb9:GFP+ neurons were rare and projected extensively throughout the myenteric plexus (<xref ref-type="fig" rid="fig2">Figure 2A–C</xref>). In situ hybridization confirmed <italic>eGFP</italic> expression was limited to a small fraction (3.5 ± 0.8%) of <italic>Cdh6+</italic> colonic neurons (<xref ref-type="fig" rid="fig2">Figure 2D and F–H</xref>), and all <italic>eGFP+</italic> neurons expressed <italic>Cdh6</italic> (<xref ref-type="fig" rid="fig2">Figure 2E</xref>).</p><fig id="fig2" position="float"><label>Figure 2.</label><caption><title>Hb9:GFP+ is expressed in a small proportion of <italic>Cdh6+</italic> colon myenteric neurons.</title><p>(<bold>A, B</bold>) Representative images of Hb9:GFP+ distal colon myenteric plexus labeled with HuC/D (IHC) (magenta) and GFP (green). (<bold>C</bold>) Proportion of total distal colon HuC/D neurons positive for GFP (n=3). (<bold>D</bold>) Proportion of distal colon <italic>Cdh6+</italic> neurons positive for <italic>eGFP</italic> (n=3). (<bold>E</bold>) Proportion of distal colon <italic>eGFP+</italic> neurons positive for <italic>Cdh6</italic> (n=3). (<bold>F–H</bold>) Representative images of Hb9:GFP+ distal colon myenteric plexus labeled with HuC/D (IHC) (blue), <italic>Cdh6</italic> (RNA) (red), and e<italic>GFP</italic> (RNA) (green). Scale bar represents 200 μm for (<bold>A, B</bold>), 50 μm for (<bold>F-H</bold>). All charts (mean ± SEM).</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig2-v2.tif"/></fig><p>We developed a protocol to perform whole-cell patch-clamp recordings (<xref ref-type="bibr" rid="bib36">Osorio and Delmas, 2011</xref>) in Hb9:GFP+ colonic neurons in the distal colon. Membrane capacitance reflecting overall size of these cells was 32±8.7 pF (<xref ref-type="fig" rid="fig3">Figure 3D</xref>); their resting membrane potential (RMP) was –49.4±2.9 mV (<xref ref-type="fig" rid="fig3">Figure 3C</xref>). The input resistance (R<sub>in</sub>) was 393±54.7 MΩ (<xref ref-type="fig" rid="fig3">Figure 3E</xref>) as computed from the slope of the voltage-current (V-I) relationship. All patched neurons had large-amplitude AP (72±2.5 mV, <xref ref-type="fig" rid="fig3">Figure 3F and E</xref>) with threshold of –26.4±0.9 mV (<xref ref-type="fig" rid="fig3">Figure 3L</xref>) and a half-width of 1.2±0.1 ms (<xref ref-type="fig" rid="fig3">Figure 3H</xref>) elicited at rheobase (20±4.5 pA, <xref ref-type="fig" rid="fig3">Figure 3G</xref>), each followed by an afterhyperpolarization (AHP = –67.7 ± 0.9 mV, <xref ref-type="fig" rid="fig3">Figure 3K</xref>). In addition, the first derivative of membrane voltage during the AP (dV/dt, <xref ref-type="fig" rid="fig3">Figure 3J</xref>) exhibited an inflection during the repolarization phase, suggesting the presence of fast and slow AP repolarization mechanisms (<xref ref-type="fig" rid="fig3">Figure 3F</xref>). Patched Hb9:GFP+ neurons generally could not sustain repetitive APs in response to long depolarizing current pulses. All patched neurons responded to hyperpolarizing current pulses with a time-dependent membrane potential sag (–6.3±1.2 mV, <xref ref-type="fig" rid="fig3">Figure 3B and M</xref>) and a rebound depolarization following the hyperpolarization (<xref ref-type="fig" rid="fig3">Figure 3B and N</xref>).</p><fig id="fig3" position="float"><label>Figure 3.</label><caption><title>Hb9:GFP+ distal colon neurons have afterhyperpolarizing (AH) electrophysiological characteristics.</title><p>(<bold>A</bold>) IR videomicroscopy image of an Hb9:GFP distal colon neuron that presented a large soma located in a ganglion (scale bar, 10 μm). (<bold>B</bold>) Current-clamp recordings of the same neuron in (<bold>A</bold>) obtained in response to application of current pulse (bottom traces) of –50 pA and +10 pA. Note the presence of a sag and a post-hyperpolarization rebound depolarization. (<bold>C–E</bold>) Box-and-whisker plots of cellular properties of recorded neurons. (<bold>C</bold>) Resting membrane potential (RMP), (<bold>D</bold>) capacitance (Cm), and (<bold>E</bold>) membrane resistance (Rm) (N=5). (<bold>F</bold>) Averaged traces of the first spike (rheobase action potential) after a depolarization step of 1 s. (<bold>J</bold>) Averaged derivative traces of the first spike (rheobase action potential). An inflection on the repolarizing phase is observed in the first derivative (arrow). (<bold>G–I, K–N</bold>) Box-and-whisker plots of electrophysiological properties of recorded neurons; rheobase action potential (AP, <bold>G–I</bold>) (<bold>G</bold>) current threshold, (<bold>H</bold>) half-width, (<bold>I</bold>) amplitude, (<bold>K</bold>) afterhyperpolarization (AHP), and (<bold>L</bold>) threshold. (<bold>M, N</bold>) Non-AP properties sag (mV) and rebound (mV). (<bold>O</bold>) H and T currents in recorded neurons. Top: example of currents obtained from voltage protocol. Bottom: 500 ms hyperpolarizations ranging from –90 to –45 for 500 ms followed by depolarizing to –40 mV. Hyperpolarizations evoked slowly activating inward current (H-current, arrow), followed by a transient inward current upon post-conditioning step to –30 mV (T-current, arrow). Largest T and H currents were obtained with the most hyperpolarized potentials (red trace). (<bold>P</bold>) Normalized peak I<sub>T</sub> plotted versus holding potential to obtain the I/I<sub>max</sub> curve (N=3/3). Scale bar represents 10 μm for (<bold>A</bold>).</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig3-v2.tif"/></fig><p>Consistent with these findings of sag and rebound, voltage clamp step hyperpolarizations revealed <italic>I<sub>H</sub></italic> (hyperpolarization-activated current, <xref ref-type="fig" rid="fig3">Figure 3N</xref>) and, upon repolarization, <italic>I<sub>T</sub></italic> (transient inward presumed Ca<sup>2+</sup> current) (<xref ref-type="bibr" rid="bib21">Huguenard, 1996</xref>) in terms of its kinetics (<xref ref-type="fig" rid="fig3">Figure 3O</xref>) and steady-state inactivation (<xref ref-type="fig" rid="fig3">Figure 3O and P</xref>). Taken together, these results show that Hb9:GFP+/<italic>Cdh6+</italic> distal colonic neurons have AP afterhyperpolarizing (AH)-type electrophysiology typical of IPANs, including rhythm generating currents <italic>I<sub>H</sub></italic> and <italic>I<sub>T</sub></italic> (<xref ref-type="bibr" rid="bib45">Xiao et al., 2004</xref>; <xref ref-type="bibr" rid="bib35">Nurgali et al., 2007</xref>; <xref ref-type="bibr" rid="bib30">Mao et al., 2006</xref>).</p></sec><sec id="s2-3"><title>Colonic IPANs have Dogiel type II morphology and abundant projections throughout the myenteric plexus</title><p>To visualize the morphology and projections of individual patched Hb9:GFP+ neurons, we included biocytin in the internal solution for postfixation single-cell tracing (<xref ref-type="fig" rid="fig4">Figure 4</xref>). Patched Hb9:GFP+ neurons displayed Dogiel type II morphology (<xref ref-type="bibr" rid="bib9">Furness et al., 2004</xref>), with large smooth cell somas and multiple branching neurites. Projections were mainly circumferential and extensively branched within myenteric ganglia. Thus, Hb9:GFP+ neurons display morphological features characteristic of IPANs (<xref ref-type="bibr" rid="bib34">Nurgali et al., 2004</xref>; <xref ref-type="bibr" rid="bib9">Furness et al., 2004</xref>).</p><fig id="fig4" position="float"><label>Figure 4.</label><caption><title>Hb9:GFP+ distal colon neurons have circumferential branching projections.</title><p>(<bold>A–C</bold>) Representative images of Hb9:GFP+ distal colon myenteric plexus labeled with HuC/D (blue), streptavidin (red), and GFP (green). (<bold>D, E</bold>) Tracings of Hb9:GFP+ distal colon neurons filled with biocytin during whole-cell patch-clamp recording. (<bold>F</bold>) Image of patched and filled Hb9:GFP+ distal colon neuron traced in (<bold>E</bold>). (<bold>G, H</bold>) Inset of (<bold>F</bold>). Scale bar represents 40 μm for (<bold>A–C</bold>), 200 μm for (<bold>D–F</bold>), 100 μm for (<bold>G, H</bold>).</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig4-v2.tif"/></fig><p>To further visualize the full extent of IPAN circuitry in the myenteric plexus, we intercrossed Cdh6<italic><sup>CreER</sup></italic> (<xref ref-type="bibr" rid="bib23">Kay et al., 2011</xref>) and ROSA26<italic><sup>LSL-tdTomato</sup></italic> (Ai14) (<xref ref-type="bibr" rid="bib28">Madisen et al., 2010</xref>) mice and induced Cre expression at 5–8 weeks of age (<xref ref-type="fig" rid="fig5">Figure 5A and B</xref>). We confirmed tdTomato+ labeling in myenteric <italic>Cdh6+</italic> neurons (<xref ref-type="fig" rid="fig5">Figure 5E and F</xref>), representing about 5% of the total neuronal population (<xref ref-type="fig" rid="fig5">Figure 5G</xref>). tdTomato+ neurons had large cell somas (major axis, 27.8±0.7 µm; minor axis, 15.9±0.4 µm) (<xref ref-type="fig" rid="fig5">Figure 5D</xref>). All ganglia of the myenteric plexus were densely innervated by tdTomato+ fibers (<xref ref-type="fig" rid="fig5">Figure 5A and B</xref>), which also projected into the circular muscle. We noted additional tdTomato+ labeling of some putative longitudinal and circular muscle cells (<xref ref-type="fig" rid="fig5">Figure 5A and B</xref>). Taken together, our data reveal an IPAN array that spans the entire motility circuitry of the colonic myenteric plexus.</p><fig id="fig5" position="float"><label>Figure 5.</label><caption><title>Cdh6<italic><sup>CreER</sup></italic>+/tdTomato+ neurons have Dogiel type II morphology.</title><p>(<bold>A, B</bold>) Representative images of Cdh6<italic><sup>CreER</sup></italic>+;tdTomato+ distal colon myenteric plexus labeled with HuC/D (IHC) (magenta) and tdTomato (IHC) (green). (<bold>C</bold>) Inset of (<bold>A</bold>). (<bold>D</bold>) Dimensions of tdTomato+ neurons (major and minor axes) (N=73; n=3). (<bold>E</bold>) Representative image of Cdh6<italic><sup>CreER</sup></italic>+;tdTomato+ distal colon myenteric plexus labeled with HuC/D (IHC) (blue), tdTomato (IHC) (red), and <italic>Cdh6</italic> (RNA) (green). Arrowheads indicate <italic>Cdh6</italic>+/tdTomato+ cells; arrow, <italic>Cdh6</italic>+/tdTomato-negative cell. (<bold>F</bold>) Proportion of <italic>Cdh6+</italic> distal colon neurons positive for tdTomato (n=6). (<bold>G</bold>) Proportion of total HuC/D neurons positive for tdTomato (proximal colon, n=5; mid colon, n=5; distal colon, n=10). Scale bar represents 100 μm for all images. All charts (mean ± SEM).</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig5-v2.tif"/></fig></sec><sec id="s2-4"><title>Optogenetic activation of distal colon IPANs evokes CMCs</title><p>In thalamocortical relay neurons, <italic>I<sub>H</sub></italic> contributes to intrinsic slow rhythmic burst firing at 1–2 Hz (<xref ref-type="bibr" rid="bib32">McCormick and Pape, 1990</xref>), but the function of <italic>I<sub>H</sub></italic> in colonic IPANs is not known. During CMCs, large regions of the ENS oscillate in synchrony at 1–2 Hz to generate traveling contractions along the colon (<xref ref-type="bibr" rid="bib41">Spencer et al., 2021</xref>). Recent calcium imaging studies have shown that IPANs participate, along with all other subtypes of enteric neurons, in this synchronized oscillatory firing (<xref ref-type="bibr" rid="bib16">Hibberd et al., 2018b</xref>). Furthermore, our electrophysiological studies confirm the presence of <italic>I<sub>H</sub></italic> in mouse colonic IPANs (<xref ref-type="fig" rid="fig3">Figure 3N</xref>). However, the role of IPANs in spontaneous CMCs is not well understood.</p><p>To interrogate the functional role of <italic>Cdh6+</italic> IPANs in CMCs, we performed ex vivo colonic contraction force recordings in conjunction with optogenetic activation. To express ChR2-eYFP in <italic>Cdh6+</italic> cells, we intercrossed Cdh6<italic><sup>CreER</sup></italic> and ROSA26<italic><sup>LSL-ChR2-eYFP</sup></italic> (Ai32) (<xref ref-type="bibr" rid="bib29">Madisen et al., 2012</xref>) mice and induced Cre expression at 5–8 weeks of age (<xref ref-type="fig" rid="fig6">Figure 6A–C</xref>). In Cdh6<italic><sup>CreER</sup></italic>+;ChR2-eYFP+ colon preparations, we observed spontaneous CMCs at regular intervals of about 3–5 min. Blue light stimulation of <italic>Cdh6+</italic> IPANs in distal colon 60–90 s after a spontaneous CMC (‘control’ CMC) resulted in an evoked, premature CMC that began during stimulation (N=17 stimulations; n=5 mice) (<xref ref-type="fig" rid="fig6">Figure 6D and E</xref>). Evoked CMCs traveled retrogradely from the distal to the proximal colon. They were similar to spontaneous CMCs in peak amplitude, area under the curve, and duration, though the contractile force (peak amplitude and AUC) was slightly weaker in the proximal colon (<xref ref-type="fig" rid="fig6">Figure 6F–H</xref>). Blue light stimulation in proximal or mid colon failed to generate CMCs (n=5/5, data not shown). In comparison, stimulation in control Cdh6<italic><sup>CreER</sup></italic>-negative;ChR2-eYFP+ colons failed to evoke any CMCs (N=28 stimulations; n=7 mice) (<xref ref-type="fig" rid="fig6s1">Figure 6—figure supplement 1</xref>).</p><fig-group><fig id="fig6" position="float"><label>Figure 6.</label><caption><title>Optogenetic stimulation of distal colonic <italic>Cdh6+</italic> neurons evokes colonic motor complexes (CMCs), while pharmacologic blockade of <italic>I<sub>H</sub></italic> abolishes spontaneous CMCs.</title><p>(<bold>A, B</bold>) Representative images of Cdh6<italic><sup>CreER</sup></italic>+;ChR2-eYFP+ distal colon myenteric plexus labeled with HuC/D (magenta) and GFP (green). (<bold>C</bold>) Proportion of total distal colon HuC/D neurons positive for ChR2-eYFP (n=6). (<bold>D</bold>) Representative force traces. Blue bars indicate timing of light stimulation. LEDs placed distal to distal hook. (<bold>E</bold>) CMC intervals recorded from force traces. Evoked (blue) intervals represent the time from the prior spontaneous CMC before stimulation to the evoked CMC following stimulation. Control (gray) intervals represent the time between the spontaneous CMC prior to stimulation and the previous spontaneous CMC (n=5). Paired t test, one-tailed. (<bold>F</bold>) CMC peak amplitude recorded from force traces. Evoked (blue) indicates the evoked CMC following stimulation. Gray (control) indicates the spontaneous CMC prior to stimulation (n=5). Paired t test, two-tailed. (<bold>G</bold>) CMC AUC (area under the curve). Evoked (blue) and control (gray) as in (<bold>F</bold>) (n=5). Paired t test, two-tailed. (<bold>H</bold>) CMC duration. Evoked (blue) and control (gray) as in (<bold>F</bold>) (n=5). Paired t test, two-tailed. (<bold>I</bold>) Representative force traces. Hex indicates addition of 300 µM hexamethonium. Blue bars indicate timing of light stimulation. LEDs placed distal to distal hook (n=5/5). (<bold>J</bold>) Representative force traces on tethered pellets. First arrowhead indicates addition of 10 µM ZD7288. Second arrowhead indicates washout in Krebs. Third arrowhead indicates addition of 1 µM TTX. ZD7288 abolished CMCs in both proximal and distal colon (n=6/6, p=0.0022, Fisher’s exact test). Washout in Krebs restored CMCs in both proximal and distal colon (n=6/6, p=0.0022, Fisher’s exact test). (<bold>K</bold>) As in (<bold>J</bold>). First arrowhead indicates addition of 2 mM CsCl. Second arrowhead indicates washout in Krebs. Third arrowhead indicates addition of 1 µM TTX. Typical CMC production was impaired or altered by CsCl (proximal colon, n=5/6, p=0.0152; distal colon, n=6/6, p=0.0022, Fisher’s exact test): increased frequency (proximal colon, n=5/6, p=0.0152; distal colon, n=6/6, p=0.0022, Fisher’s exact test), decreased in amplitude (proximal colon, n=5/6, p=0.0152; distal colon, n=4/6, p=0.0606, Fisher’s exact test); retrograde force (proximal colon, n=2/6; distal colon, n=2/6). Scale bar represents 100 μm for (<bold>A, B</bold>). *p&lt;0.05; **p&lt;0.01; ***p&lt;0.001.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig6-v2.tif"/></fig><fig id="fig6s1" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 1.</label><caption><title>Optogenetic stimulation control.</title><p>(<bold>A</bold>) Representative force traces of control Cdh6<italic><sup>CreER</sup></italic>-;Chr2eYFP+ colon (n=5). Blue bars indicate timing of light stimulation. LEDs placed distal to distal hook. (<bold>B</bold>) The duration of CMC intervals recorded from force traces in control Cdh6<italic><sup>CreER</sup></italic>-;Chr2eYFP+ colon. CMC intervals containing optical stimulation are shown in blue in comparison to preceding spontaneous CMC intervals shown in black/grey (control). Each data point represents average data from a single animal. N=7 for the first two groups (proximal and mid-proximal) and N=6 for the last two groups (mid-distal and distal). Paired t test, one tailed.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig6-figsupp1-v2.tif"/></fig><fig id="fig6s2" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 2.</label><caption><title>Pharmacologic blockade of <italic>I<sub>H</sub></italic> with ZD7288 abolishes spontaneous colonic motor complexes (CMCs).</title><p>(<bold>A, B</bold>) Representative force traces from tethered pellet in proximal half (<bold>A</bold>) or distal half (<bold>B</bold>) of colon. Addition of 10 µM ZD7288 (first arrowhead), followed by washout in Krebs (second arrowhead), and addition of 1 µM TTX (third arrowhead). Scale bars represent 2 g force (vertical bars) and 10 min (horizontal bars) for all traces.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig6-figsupp2-v2.tif"/></fig><fig id="fig6s3" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 3.</label><caption><title>Pharmacologic blockade of <italic>I<sub>H</sub></italic> with CsCl impairs generation of colonic motor complexes (CMCs).</title><p>(<bold>A, B</bold>) Representative force traces from tethered pellet in proximal half (<bold>A</bold>) or distal half (<bold>B</bold>) of colon. Addition of 2 mM CsCl (first arrowhead), followed by washout in Krebs (second arrowhead), and addition of 1 µM TTX (third arrowhead). Scale bars represent 2 g force (vertical bars) and 10 min (horizontal bars) for all traces.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-101043-fig6-figsupp3-v2.tif"/></fig></fig-group><p>CMCs have previously been shown to depend on nicotinic cholinergic transmission (<xref ref-type="bibr" rid="bib16">Hibberd et al., 2018b</xref>). We performed optogenetic stimulation in the presence of hexamethonium, a blocker of nicotinic cholinergic transmission. Spontaneous CMCs were abolished in hexamethonium, and CMCs could not be evoked by optogenetic stimulation (<xref ref-type="fig" rid="fig6">Figure 6I</xref>). We conclude that activation of <italic>Cdh6+</italic> distal colon IPANs evokes retrograde-traveling but otherwise characteristic and hexamethonium-sensitive CMCs.</p></sec><sec id="s2-5"><title>Blockade of <italic>I<sub>H</sub></italic> current in colonic IPANs disrupts CMC production</title><p>To determine whether <italic>I<sub>H</sub></italic> in IPANs may contribute to oscillatory firing driving CMCs, we measured colonic contraction force on a tethered pellet in the presence of <italic>I<sub>H</sub></italic> blockers ZD7288 or CsCl (<xref ref-type="bibr" rid="bib14">Harris and Constanti, 1995</xref>; <xref ref-type="bibr" rid="bib10">Galligan et al., 1990</xref>). ZD7288 blocks <italic>I<sub>H</sub></italic> in all IPANs, including <italic>Cdh6</italic>+ IPANs. Spontaneous CMCs were recorded in all preparations of both proximal and distal colon prior to drug application. Addition of 10 µM ZD7288 to the recording chamber abolished spontaneous CMCs and washout of ZD7288 recovered spontaneous CMC activity (<xref ref-type="fig" rid="fig6">Figure 6J</xref>, <xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref>). Addition of 2 mM CsCl also impaired or altered spontaneous rhythmic production of typical CMCs (<xref ref-type="fig" rid="fig6">Figure 6K</xref>, <xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>); rhythmic contractions increased in frequency (proximal colon, n=5/6; distal colon, 6/6), decreased in amplitude (proximal colon, n=5/6; distal colon, n=4/6, p=0.0606), or in some cases even included significant retrograde force components (proximal colon, n=2/6; distal colon, n=2/6). We conclude that pharmacologic blockade of <italic>I<sub>H</sub></italic> in IPANs impairs the production of CMCs in the mouse colon.</p></sec></sec><sec id="s3" sec-type="discussion"><title>Discussion</title><p>Our study shows that in the myenteric plexus, <italic>Cdh6</italic> is expressed exclusively in <italic>Calcb+/Nmu+</italic> IPANs located in the mouse distal colon, while in the small intestine, <italic>Cdh6</italic> is also expressed in some <italic>Calcb+/Nmu-</italic> and <italic>Calcb-/Nmu-</italic> neurons. We confirm the IPAN identity of <italic>Cdh6+</italic> distal colonic neurons by electrophysiological recordings revealing AH-type signature, and single neuron tracings showing Dogiel type II morphology. Finally, we demonstrate that activation of IPANs in the distal colon evokes retrograde CMCs, while pharmacologic blockade of <italic>I<sub>H</sub></italic>, a rhythmicity-associated current we show also present in mouse colonic IPANs, disrupts spontaneous CMC generation.</p><p>Together with <italic>Cdh8</italic>, which we show to be co-expressed with <italic>Cdh6,</italic> our study validates two new adhesion molecules specific to IPANs in the distal colon. Notably, these markers show a different expression pattern than another cadherin, <italic>Cdh9</italic>, which is exclusively expressed in the small intestine in mouse, not in the colon (<xref ref-type="bibr" rid="bib31">May-Zhang et al., 2021</xref>). <italic>Cdh9</italic> is expressed in a subset of IPANs not expressing either <italic>Calcb</italic> or <italic>Nmu</italic> (<xref ref-type="bibr" rid="bib39">Qu et al., 2008</xref>; <xref ref-type="bibr" rid="bib31">May-Zhang et al., 2021</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). It is possible that in the small intestine <italic>Cdh6</italic> and <italic>Cdh9</italic> mark some of the same neurons. However, RNA-Seq data from two separate studies suggest this is unlikely (<xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). We conclude that <italic>Cdh6/Cdh8</italic> IPANs are a separate population from <italic>Cdh9</italic> IPANs. Finally, our study was limited to the myenteric plexus, containing motility circuitry. IPANs are also present in the submucosal plexus, and it would be interesting to investigate <italic>Cdh6</italic> expression and neuronal subtype in the SMP.</p><p>Though IPANs are positioned to initiate motility by activating other subtypes in enteric circuitry, their role in spontaneous CMCs has been debated, as CMCs can occur in the absence of luminal contents, without any apparent stimulus for IPANs to sense, or upon stimulation of nitrergic populations (<xref ref-type="bibr" rid="bib34">Nurgali et al., 2004</xref>; <xref ref-type="bibr" rid="bib24">Koh et al., 2022</xref>). Only recently has evidence emerged to suggest that IPANs participate in oscillatory rhythmic firing of the ENS during CMCs, and that activation of neuronal subtypes expressing calretinin, including IPANs, together can evoke CMCs (<xref ref-type="bibr" rid="bib16">Hibberd et al., 2018b</xref>; <xref ref-type="bibr" rid="bib15">Hibberd et al., 2018a</xref>). Our results demonstrate that excitement of IPANs alone in the distal colon is capable of producing retrograde CMCs. The exact mechanism causing CMC generation at an established and controlled frequency of once every few minutes, without evident stimulus, remains to be determined.</p><p>A major observation was that optogenetic stimulation of <italic>Cdh6</italic>+ neurons readily evoked CMCs from the distal colon, but never from the proximal colon. Failure of proximal colonic stimulation to evoke CMCs may reflect inhibition by IPAN recruitment of descending pathways; or conversely, high efficacy of stimulation from distal colon may reflect bias toward activation of ascending excitatory cholinergic pathways. Our classification of <italic>Cdh6+</italic> neurons as IPANs in the distal colon may not extend to the proximal colon; thus, we cannot extrapolate that <italic>Cdh6</italic>+ optogenetic activation in the colon is restricted to IPANs as in the distal colon. In addition, our stimulus paradigm in the proximal colon may not have activated enough neurons based on light density and illumination. In previous studies, optogenetic stimulation of calretinin-expressing neurons or choline acetyl transferase-expressing neurons (both of which include IPANs, interneurons, and motor neurons) elicited anterograde CMCs regardless of stimulus location, including proximal colon (<xref ref-type="bibr" rid="bib15">Hibberd et al., 2018a</xref>; <xref ref-type="bibr" rid="bib6">Efimov et al., 2024</xref>). Proximal colon stimulation of nitric oxide synthase-expressing neurons also elicited CMCs (<xref ref-type="bibr" rid="bib24">Koh et al., 2022</xref>). These studies, as noted, each activated multiple neuronal classes employing the same neurotransmitter. How broad and nonspecific activation of such disparate neuron classes readily evokes CMCs remains unclear.</p><p>Spontaneous and evoked CMCs were abolished in hexamethonium, confirming that CMC synchronous firing is dependent on nicotinic cholinergic transmission (<xref ref-type="bibr" rid="bib16">Hibberd et al., 2018b</xref>). This reinforces that nicotinic cholinergic transmission is required for greater activation and synchrony of the entire ENS motility network to generate CMCs.</p><p>Through our electrophysiological investigation of IPANs in the distal colon using voltage clamp, our work reveals the presence of two voltage-gated ion conductances and their underlying currents, <italic>I<sub>T</sub></italic> and <italic>I<sub>H</sub></italic>. Slow AHP, <italic>I<sub>H</sub>,</italic> and <italic>I<sub>T</sub></italic> have been previously identified as distinguishing characteristics of IPANs in rat and guinea pig (<xref ref-type="bibr" rid="bib45">Xiao et al., 2004</xref>; <xref ref-type="bibr" rid="bib35">Nurgali et al., 2007</xref>; <xref ref-type="bibr" rid="bib30">Mao et al., 2006</xref>). Although prior studies noted <italic>I<sub>H</sub></italic> and proposed <italic>I<sub>T</sub></italic> in guinea pig Dogiel type II neurons (<xref ref-type="bibr" rid="bib35">Nurgali et al., 2007</xref>), they have not previously been reported in studies of intact mouse distal colon myenteric plexus due to the conventional reliance on sharp electrode recordings in which voltage clamp is not possible (<xref ref-type="bibr" rid="bib27">Li et al., 2022</xref>). The presence of <italic>I<sub>H</sub></italic> and <italic>I<sub>T</sub></italic> in thalamocortical relay neurons and other cell types supports intrinsic rhythmicity (<xref ref-type="bibr" rid="bib32">McCormick and Pape, 1990</xref>; <xref ref-type="bibr" rid="bib37">Pape and McCormick, 1989</xref>). It is possible that these two currents may similarly promote autonomous rhythmic activity in colonic IPANs.</p><p><italic>I<sub>H</sub></italic> is conducted through hyperpolarization-activated cyclic nucleotide-gated (HCN) channels (<xref ref-type="bibr" rid="bib3">Benarroch, 2013</xref>). HCN channel family members HCN1 and HCN2 have been shown to be present in mouse distal colonic Dogiel type II neurons (<xref ref-type="bibr" rid="bib45">Xiao et al., 2004</xref>), and RNA-Seq ENS screens similarly indicate their expression in IPANs (<xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>; <xref ref-type="bibr" rid="bib33">Morarach et al., 2021</xref>). Knockout of HCN2 in mouse leads to a severe growth restriction phenotype due to malnutrition and GI dysmotility (<xref ref-type="bibr" rid="bib7">Fisher et al., 2018</xref>). Here, we demonstrate that pharmacologic blockade of <italic>I<sub>H</sub></italic>, which we show to be present in IPANs, with two distinct HCN channel blockers ZD7288 and CsCl abolishes CMCs, an otherwise persistent and ongoing pattern of motor activity in the mouse colon. We speculate that <italic>I<sub>H</sub></italic> in colonic IPANs, as in thalamocortical neurons, plays a role in promoting either rhythmic oscillatory single neuron activity or network burst firing, or both (<xref ref-type="bibr" rid="bib32">McCormick and Pape, 1990</xref>; <xref ref-type="bibr" rid="bib37">Pape and McCormick, 1989</xref>). Blocking <italic>I<sub>H</sub></italic> may impair individual IPANs’ ability to fire rhythmically, or the ability of IPANs to synchronize into a network burst firing mode. Failure of IPANs to fully activate and synchronize could prevent generation of both (<xref ref-type="bibr" rid="bib8">Fung and Vanden Berghe, 2020</xref>) synchronized rhythmic myenteric network activation of motility circuits, and (<xref ref-type="bibr" rid="bib34">Nurgali et al., 2004</xref>) the resulting synchronized contractions that sum to much larger contractile forces during CMCs.</p><p>Type II cadherins are most commonly homophilic synaptic cell adhesion molecules (<xref ref-type="bibr" rid="bib46">Yamagata et al., 2018</xref>; <xref ref-type="bibr" rid="bib2">Basu et al., 2015</xref>). <italic>Cdh6</italic> can also form heterodimers with <italic>Cdh7, Cdh10,</italic> and <italic>Cdh14</italic> (<xref ref-type="bibr" rid="bib40">Shimoyama et al., 2000</xref>). However, <italic>Cdh10</italic> and <italic>Cdh14</italic> are very lowly expressed in the colon by single-cell RNA sequencing (<xref ref-type="bibr" rid="bib4">Drokhlyansky et al., 2020</xref>), and we performed RNAscope for <italic>Cdh7</italic> and did not observe any expression (data not shown). Restricted expression of two type II cadherins, <italic>Cdh6</italic> and <italic>Cdh8</italic>, to mouse colonic IPANs raises the possibility of these cadherins supporting IPAN-IPAN synaptic connections. While broadly speaking, IPANs are not known to receive synaptic input and in fact have been characterized electrophysiologically by their lack thereof (<xref ref-type="bibr" rid="bib18">Hirst et al., 1974</xref>), some work has in fact suggested that AH-AH neuron interconnected pairs may exist (<xref ref-type="bibr" rid="bib25">Kunze et al., 1993</xref>). Immunohistochemical and electron microscopy investigation of synapses on enteric neurons further showed that calbindin-positive neurons, presumed IPANs, do receive synapses, though fewer than non-calbindin neurons, and some of those synapses were also calbindin-reactive (<xref ref-type="bibr" rid="bib38">Pompolo and Furness, 1988</xref>). These observations informed a proposed ‘IPAN driver circuit’ theory, in which IPANs form an interconnected network of positive feedback to synchronize and amplify sensory signaling and thus activate large swaths of enteric circuitry (<xref ref-type="bibr" rid="bib44">Wood, 2012</xref>). In contrast, more recently, activation of large regions of the ENS has been suggested to be driven by interneuronal networks (<xref ref-type="bibr" rid="bib1">Barth et al., 2022</xref>). It is important to note that our study was unsuccessful in localizing Cdh6 protein via immunohistochemistry, to confirm protein expression in neurons or in Cdh6-cre-tdT+ muscle cells or visualize synaptic connections between neurons or connections to other cell types. Further investigations are necessary to determine whether synaptic adhesion molecules, such as <italic>Cdh6</italic> and <italic>Cdh8</italic>, may in fact support IPAN-IPAN synapses underlying an ‘IPAN driver circuit’.</p></sec><sec id="s4" sec-type="materials|methods"><title>Materials and methods</title><table-wrap id="keyresource" position="anchor"><label>Key resources table</label><table frame="hsides" rules="groups"><thead><tr><th align="left" valign="bottom">Reagent type (species) or resource</th><th align="left" valign="bottom">Designation</th><th align="left" valign="bottom">Source or reference</th><th align="left" valign="bottom">Identifiers</th><th align="left" valign="bottom">Additional information</th></tr></thead><tbody><tr><td align="left" valign="bottom">Strain, strain background (<italic>Mus musculus</italic>)</td><td align="left" valign="bottom">C57BL/6J</td><td align="left" valign="bottom">Jackson Laboratory</td><td align="left" valign="bottom">#000664</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>M. musculus</italic>)</td><td align="left" valign="bottom">Hb9:GFP</td><td align="left" valign="bottom">Jackson Laboratory</td><td align="left" valign="bottom">#005029</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>M. musculus</italic>)</td><td align="left" valign="bottom">Ai14</td><td align="left" valign="bottom">Jackson Laboratory</td><td align="left" valign="bottom">#007908</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>M. musculus</italic>)</td><td align="left" valign="bottom">Ai32 (ChR2-eYFP)</td><td align="left" valign="bottom">Jackson Laboratory</td><td align="left" valign="bottom">#024109</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>M. musculus</italic>)</td><td align="left" valign="bottom">Cdh6<italic><sup>CreER</sup></italic></td><td align="left" valign="bottom">Xin Duan, UCSF</td><td align="left" valign="bottom"/><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Human anti-HuC/D</td><td align="left" valign="bottom">Vanda Lennon, Mayo Clinic</td><td align="left" valign="bottom"/><td align="left" valign="bottom">IF(1:75,000)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Sheep anti-GFP (polyclonal)</td><td align="left" valign="bottom">Biogenesis</td><td align="left" valign="bottom">Cat# 4745-1051, RRID:<ext-link ext-link-type="uri" xlink:href="http://identifiers.org/RRID:AB_619712">AB_619712</ext-link></td><td align="left" valign="bottom">IF(1:1000)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Rabbit anti-RFP (polyclonal)</td><td align="left" valign="bottom">Rockland</td><td align="left" valign="bottom">Cat# 600-401-379, RRID:<ext-link ext-link-type="uri" xlink:href="http://identifiers.org/RRID:AB_2209751">AB_2209751</ext-link></td><td align="left" valign="bottom">IF(1:1000)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Rabbit anti-PGP9.5 (polyclonal)</td><td align="left" valign="bottom">Abcam</td><td align="left" valign="bottom">#ab15503, RRID:<ext-link ext-link-type="uri" xlink:href="http://identifiers.org/RRID:AB_301912">AB_301912</ext-link></td><td align="left" valign="bottom">IF(1:4000)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Donkey anti-human Alexa Fluor (AF)-647 (polyclonal)</td><td align="left" valign="bottom">Jackson ImmunoResearch</td><td align="left" valign="bottom">#709-605-098, RRID:<ext-link ext-link-type="uri" xlink:href="http://identifiers.org/RRID:AB_2340577">AB_2340577</ext-link></td><td align="left" valign="bottom">IF(1:500)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Donkey anti-sheep AF-488 (polyclonal)</td><td align="left" valign="bottom">Invitrogen</td><td align="left" valign="bottom">#A11015, RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:AB_141362">AB_141362</ext-link></td><td align="left" valign="bottom">IF(1:1000)</td></tr><tr><td align="left" valign="bottom">Antibody</td><td align="left" valign="bottom">Donkey anti-rabbit AF-488 (polyclonal)</td><td align="left" valign="bottom">Invitrogen</td><td align="left" valign="bottom">#A21206, RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:AB_2535792">AB_2535792</ext-link></td><td align="left" valign="bottom">IF(1:1000)</td></tr><tr><td align="left" valign="bottom">Peptide, recombinant protein</td><td align="left" valign="bottom">Streptavidin AF-546</td><td align="left" valign="bottom">Invitrogen</td><td align="left" valign="bottom">#S11225</td><td align="left" valign="bottom">IF(1:500)</td></tr><tr><td align="left" valign="bottom">Sequence-based reagent</td><td align="left" valign="bottom">RNAscope probe Mm-Cdh6</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #519541</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Sequence-based reagent</td><td align="left" valign="bottom">RNAscope probe Mm-Cdh8</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #485461</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Sequence-based reagent</td><td align="left" valign="bottom">RNAscope probe Mm-Nmu</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #446831</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Sequence-based reagent</td><td align="left" valign="bottom">RNAscope probe Mm-Calcb</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #425511</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Sequence-based reagent</td><td align="left" valign="bottom">RNAscope probe Mm-eGFP</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #400281</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Commercial assay or kit</td><td align="left" valign="bottom">RNAscope Multiplex Fluorescent V2 Assay kit with RNA-Protein Co-detection Ancillary Kit</td><td align="left" valign="bottom">Advanced Cell Diagnostics</td><td align="left" valign="bottom">Cat #323100</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">Protease XIV</td><td align="left" valign="bottom">Sigma</td><td align="left" valign="bottom">#P5417</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">Collagenase</td><td align="left" valign="bottom">Worthington</td><td align="left" valign="bottom">#CLS-4</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">Dispase</td><td align="left" valign="bottom">Sigma</td><td align="left" valign="bottom">#D4693</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">ZD7288</td><td align="left" valign="bottom">Sigma-Aldrich</td><td align="left" valign="bottom">#73777</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">Cesium chloride</td><td align="left" valign="bottom">Sigma-Aldrich</td><td align="left" valign="bottom">#C4036</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom">Tetrodotoxin citrate</td><td align="left" valign="bottom">Alomone Labs</td><td align="left" valign="bottom">#T-550</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software, algorithm</td><td align="left" valign="bottom">Imaris Filament Tracer</td><td align="left" valign="bottom">Bitplane, Oxford Instruments</td><td align="left" valign="bottom"/><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software, algorithm</td><td align="left" valign="bottom">LabChart 7, 8</td><td align="left" valign="bottom">AD Instruments</td><td align="left" valign="bottom"/><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software, algorithm</td><td align="left" valign="bottom">Prism 9</td><td align="left" valign="bottom">GraphPad</td><td align="left" valign="bottom"/><td align="left" valign="bottom"/></tr></tbody></table></table-wrap><sec id="s4-1"><title>Mice</title><p>All procedures conformed to the National Institutes of Health Guidelines for the Care and Use of Laboratory Animals and were approved by the Stanford University Administrative Panel on Laboratory Animal Care. Mice were group housed up to a maximum of five adults per cage. Food and water were provided ad libitum and mice were maintained on a 12:12 LD cycle. Male and female mice were used in all experiments.</p><p>Wild-type C57BL/6J mice (#000664), Hb9:GFP mice (#005029), Ai14 (#007908), and Ai32 (#024109) (<xref ref-type="bibr" rid="bib28">Madisen et al., 2010</xref>) mice were obtained from the Jackson Laboratory and from the Animal Resource Center (ARC) in Western Australia, with JAX heritage. Cdh6<italic><sup>CreER</sup></italic> mice (#029428) (<xref ref-type="bibr" rid="bib23">Kay et al., 2011</xref>) were provided by Xin Duan (UCSF). Cdh6<italic><sup>CreER</sup></italic> mice were crossed to Ai14 mice and Ai32 mice to generate mice heterozygous for each allele, termed Cdh6<italic><sup>CreER</sup></italic>;Ai14 and Cdh6<italic><sup>CreER</sup></italic>;Ai32. Tamoxifen (20 mg/mL in corn oil) was administered via oral gavage to a final dose of 2.5 mg/10 g mouse for 5 consecutive days beginning at 5–8 weeks of age. Induced mice were group housed for at least 4 weeks prior to experiments.</p><p>Adult male and female mice (Cdh6<italic><sup>CreER</sup></italic>+;Ai32 and Cdh6<italic><sup>CreER</sup></italic>-;Ai32) aged 16–19 weeks were euthanized by isoflurane inhalation overdose in accordance with Flinders Animal Welfare Committee guidelines (ethics approval #4004). The protocol for animal euthanasia is approved by the National Health and Medical Research Council (NHMRC) Australian code for the care and use of animal for scientific purposes (8th edition, 2013) and recommendations from the NHMRC Guidelines to promote the well-being of animals used for scientific purposes (2008).</p></sec><sec id="s4-2"><title>Dissection</title><p>Mice were culled by CO<sub>2</sub> and cervical dislocation. Small intestine and colon were removed and flushed with ice-cold PBS, then placed in a Sylgard-lined Petri dish with ice-cold PBS for further dissection.</p><sec id="s4-2-1"><title>Wholemount preparations</title><p>Intestinal segments were prepared and fixed as in <xref ref-type="bibr" rid="bib11">Gomez Frittelli et al., 2023</xref>. Briefly, each intestinal segment was opened along the mesentery border, pinned flat under light tension serosa-side up, and fixed in 4% PFA in PBS at 4°C with gentle rocking for 90 min. Segments were washed three times in PBS at 4°C for at least 10 min with gentle rocking. Muscularis was separated from the mucosa at one end of the segment with fine forceps for 2–3 mm, then pinned mucosa-side up in the dish. The mucosa was peeled away from the muscularis with fine forceps while the muscularis was gently held down in the dish with a cotton swab. For immunohistochemistry, segments were processed immediately or stored in PBS with 0.1% NaN<sub>3</sub> at 4°C until use. For RNAscope, muscularis segments were postfixed in 4% PFA in PBS at 4°C with gentle rocking overnight, then washed three times in PBS at 4°C with gentle rocking for at least 10 min each wash before use.</p></sec></sec><sec id="s4-3"><title>Immunohistochemistry</title><p>Immunohistochemistry was performed as described previously (<xref ref-type="bibr" rid="bib13">Hamnett et al., 2022</xref>). Briefly, muscularis wholemount tissue segments about 7 mm × 7 mm were incubated with primary antibodies in PBT (PBS with 1% BSA and 0.3% Triton X-100) at 4°C with gentle rocking overnight, then washed three times in PBT for at least 10 min each at room temperature with gentle shaking. Tissues were incubated in secondary antibodies in PBT for 2 hr with gentle shaking, washed twice in PBT, and twice in PBS, then mounted on Superfrost Plus slides with Fluoromount G medium (Southern Biotech). Primary antibodies: human anti-HuC/D (1:75k) (gift from Vanda Lennon); sheep anti-GFP (1:1k) (Biogenesis); rabbit anti-RFP (1:1k) (Rockland); rabbit anti-PGP9.5 (1:4k) (Abcam). Secondary antibodies: donkey anti-human Alexa Fluor (AF)-647 (1:500); donkey anti-sheep AF-488 (1:1k); donkey anti-rabbit AF-488 (1:1k); streptavidin AF-546 (1:500).</p></sec><sec id="s4-4"><title>RNAscope</title><p>In situ hybridization in combination with immunohistochemistry was performed on muscularis wholemount tissues using the RNAscope Multiplex Fluorescent V2 Assay kit with RNA-Protein Co-detection Ancillary Kit [ACD], according to the manufacturer’s instructions with modifications as previously described (<xref ref-type="bibr" rid="bib12">Guyer et al., 2023</xref>). Probes used were <italic>Cdh6</italic> (#519541), <italic>Cdh8</italic> (#485461), <italic>Nmu</italic> (#446831), <italic>Calcb</italic> (#425511), and <italic>eGFP</italic> (#400281).</p></sec><sec id="s4-5"><title>Confocal imaging</title><p>Images were acquired on a Leica SP8 confocal microscope using a ×20 (NA 0.75) oil objective at 1024 × 1024 pixel resolution. Tiled images (24–30 tiles) of z-stacks (2.5 µm between planes) were acquired and stitched together using the Navigator mode within LASX (Leica). Imaged regions were located away from the mesenteric border.</p></sec><sec id="s4-6"><title>Image analysis and quantification</title><p>Image analysis was performed using ImageJ/Fiji (NIH, Bethesda, MD, USA), as described previously (<xref ref-type="bibr" rid="bib13">Hamnett et al., 2022</xref>). HuC/D images (z-stack individual planes) were blurred and thresholded, then maximally projected and total neurons counted using the Analyze Particles function. Cdh6<italic><sup>CreER</sup></italic>;Ai32 expression and RNAscope in situ hybridization and Cdh6<italic><sup>CreER</sup></italic>;Ai14 expression were counted manually. Cell tracing was performed in Imaris using Filament Tracer (Bitplane, Oxford Instruments).</p></sec><sec id="s4-7"><title>Electrophysiological recordings</title><p>Whole-cell patch-clamp electrophysiological recordings of Hb9:GFP+ neurons were performed according to <xref ref-type="bibr" rid="bib36">Osorio and Delmas, 2011</xref>, with modifications for recording from the distal colon. The protocol is described in brief below.</p><sec id="s4-7-1"><title>Tissue dissection and preparation</title><p>Mice aged 8–10 weeks were culled by CO<sub>2</sub> and cervical dislocation. The colon was removed and flushed with ice-cold oxygenated Krebs solution (118 mM NaCl, 4.8 mM KCl, 1 mM NaH<sub>2</sub>PO<sub>4</sub>, 25 mM NaHCO<sub>3</sub>, 1.2 mM MgCl<sub>2</sub>, 2.5 mM CaCl<sub>2</sub>, and 11 mM glucose, supplemented with scopolamine [2 M] and nicardipine [6 μM]), then placed in a Sylgard-lined Petri dish with ice-cold oxygenated Krebs solution for further dissection. Krebs solution was changed out for fresh oxygenated solution every 5 min. Under a dissection microscope, the distal colon was pinned and the mucosa peeled away using fine forceps, leaving a few millimeters of mucosa along the edges of the tissue for pinning stability. The muscularis was then flipped over and re-pinned, serosa side up, and the longitudinal muscle carefully peeled away. The tissue was transferred to a custom 3D-printed recording chamber lined with a thin layer of clear Sylgard, and re-pinned under light tension, with the myenteric plexus facing up. The tissue was kept at 32°C and was continuously perfused with oxygenated Krebs solution. Hb9:GFP+ neurons were visually identified within a ganglion under epifluorescence illumination with a 455 nM LED (Thorlabs, M455L2) and a 470 (excitation)/525 (emission) nm wavelength filter set. A local perfusion of protease XIV (0.2% in Krebs) (Sigma, P5417) was applied on top of the targeted cell to digest any muscle fiber residue. A 1–2 MΩ pipet with a trimmed arm hair glued to the tip was used to brush and clean the surface of the ganglion. Further cleaning with 1 mg/mL collagenase (Worthington, CLS-4) 4 mg/mL dispase (Sigma, D4693) in Krebs solution was also performed to expose the GFP neuron for patching.</p></sec><sec id="s4-7-2"><title>Patching and recording</title><p>Patch pipettes (4–6 MΩ) pulled from borosilicate glass were filled with internal solution containing in mM: 144 K-gluconate, 3 MgCl<sub>2</sub>, 0.5 EGTA, 10 HEPES, pH 7.2 (285/295 mOsm), and 2% biocytin (Millipore Sigma, B4261-100MG). Patch-clamp recordings were collected with a Multiclamp 700A (Molecular Devices) amplifier, a Digidata 1440 digitizer, and pClamp10.7 (Molecular Devices). Recordings were sampled and filtered at 10 kHz. Passive properties analysis was performed using pClamp10.7. Analysis of AP was performed using a custom MATLAB (MathWorks) software. All recordings were performed at 32°C. Membrane potentials were not corrected for liquid junction potential. Immediately after whole-cell configuration, the cell was maintained at –70 mV and a short voltage clamp membrane test protocol consisting of 20 times 600 ms, 10 mV depolarization steps was performed to assess cell health and recording conditions. Recordings were performed in Hb9:GFP+ colonic neurons with an access resistance less than 30 MΩ (16.69±2.63 MΩ). Next, the current clamp mode was used to measure RMP, input resistance (Rin), and APs stimulated. Membrane potential was not adjusted from resting potential, and cells were depolarized by 1 s current pulses in 10 pA increments until APs were triggered (rheobase). Finally, if the seal was still stable, a voltage clamp steady-state inactivation of T-current protocol was performed as previously described (<xref ref-type="bibr" rid="bib20">Huguenard and Prince, 1992</xref>). In brief, a sequence of depolarization from –90 to –45 mV for 500 ms quickly followed by a depolarization to –40 mV for 200 ms. Tissues were then fixed and immunostained according to Wholemount preparations and Immunohistochemistry sections above.</p></sec></sec><sec id="s4-8"><title>Mechanical recordings and optical stimulation</title><p>Optogenetic stimulation experiments were performed as previously described (<xref ref-type="bibr" rid="bib15">Hibberd et al., 2018a</xref>). A 2.5 mm stainless-steel rod was inserted through the lumen of the colon and mounted in an organ bath (120*40*12 mm; L*W*H) located on a heated base. Krebs solution (35.5–36°C) superfused the bath (~5 mL/min). Smooth muscle force was recorded via four evenly spaced hooks in the colonic muscularis externa, each linked to an isometric force transducer (Grass FT03C) by suture thread. Initial base resting tension was set between 0.5 and 1.0 g. Preamplified signals (Biomedical Engineering, Flinders University) were digitized by a PowerLab 16/35 (ADInstruments, Bella Vista, NSW, Australia) and recorded using LabChart 7 software (ADInstruments) on iMac computer. Post hoc analysis of the mechanical recordings was done using LabChart 8 software on PC.</p><p>For optical stimulation during mechanical recordings in vitro, two LEDs (emitting 470 nmλ photons; C470DA2432, Cree Inc, NC, USA) were used, driven by a variable power supply. The area of light emission from each LED was 240 μm × 320 μm (0.0768 mm<sup>2</sup>). To characterize LED function, light power density across a range of currents was measured 5 mm from the LED using a standard photodiode power sensor (S120C; Thorlabs, NJ, USA) and a power meter (Thorlabs, PM100USB). The stimulator panel within LabChart software was used to set parameters and manually trigger LED pulse trains via the 10 V analogue output of the PowerLab and an ILD1 opto-isolator.</p></sec><sec id="s4-9"><title>Intraluminal pellet CMC recordings</title><p>To record proximal and distal colon CMCs separately (<xref ref-type="bibr" rid="bib22">Ishizawa, 1984</xref>; <xref ref-type="bibr" rid="bib17">Hibberd et al., 2022</xref>), full-length colon was bisected halfway between the caeco-colonic junction and terminal rectum, creating equal length proximal and distal colon preparations. Each preparation was suspended vertically on a stainless-steel holder inside a glass, water jacketed organ bath containing Krebs solution (<xref ref-type="fig" rid="fig6">Figure 6J and K</xref>). A 2.7 mm diameter synthetic pellet (polymethyl methacrylate, ‘Perspex’) was placed inside the gut lumen and linked by stainless-steel rod to a force transducer (MLT0420, ADInstruments), allowing measurement of both anterograde and retrograde propulsive forces on the pellet. Signals were amplified by bridge amplifier (FE224, ADInstruments), digitized at 1 kHz (PLCF1, ADInstruments) and recorded using LabChart 8 software.</p><p>ZD7288 (73777, Sigma-Aldrich) was dissolved in water as stock solution at 10 mM. Cesium chloride (C4036, Sigma-Aldrich) was dissolved in water as stock solution at 200 mM. Tetrodotoxin citrate (T-550, Alomone Labs) was dissolved in water as stock solution at 3 mM. Control, ZD7288, CsCl, and washout periods were at least 30 min; TTX was applied for at least 10 min.</p></sec><sec id="s4-10"><title>Statistical analysis</title><p>Statistical tests and graphical representation of data were performed using Prism 9 software (GraphPad). Statistical comparisons were performed using paired t tests (one-tailed, CMC intervals; two-tailed, peak amplitude, AUC, duration) and Welch’s t test (marker colocalizations). Asterisks indicate significant differences.</p></sec><sec id="s4-11"><title>Study design</title><sec id="s4-11-1"><title>Sample size determination</title><p>Power analyses for previous similar experiments of neuronal marker cell counting determined that a sample size of n=5 was sufficient. For colonic motility experiments, sample sizes were based on 25% of measurement variance explained by the treatment effect (the minimum effect of interest) and a within group variance of 20% (effect size f=1.12). Repeated measures ANOVA with two groups with an alpha error probability of 5% and power of 95% gives a minimum sample size of five replicates in each group.</p></sec><sec id="s4-11-2"><title>Randomization</title><p>Randomization was not relevant to our study, as all mice were allocated into experimental groups based on genotype.</p></sec><sec id="s4-11-3"><title>Blinding</title><p>For optogenetic studies, experimenters were initially blinded to group allocation; however, it should be noted that overt functional responses to optogenetic stimulation unavoidably reveal group allocation once experiments are underway. For pharmacological experiments in control mice, it was not possible to blind the subject performing analysis of the mechanical force recordings.</p></sec><sec id="s4-11-4"><title>Inclusion/exclusion criteria</title><p>All experiments were completed with replicates, and all replicates included in the data, with sample sizes detailed in the text and figure legends. Data was not excluded in this study.</p></sec></sec></sec></body><back><sec sec-type="additional-information" id="s5"><title>Additional information</title><fn-group content-type="competing-interest"><title>Competing interests</title><fn fn-type="COI-statement" id="conf1"><p>No competing interests declared</p></fn><fn fn-type="COI-statement" id="conf2"><p>Reviewing editor, <italic>eLife</italic></p></fn></fn-group><fn-group content-type="author-contribution"><title>Author contributions</title><fn fn-type="con" id="con1"><p>Conceptualization, Formal analysis, Investigation, Visualization, Methodology, Writing – original draft, Writing – review and editing</p></fn><fn fn-type="con" id="con2"><p>Formal analysis, Investigation, Visualization, Methodology, Writing – original draft</p></fn><fn fn-type="con" id="con3"><p>Formal analysis, Investigation</p></fn><fn fn-type="con" id="con4"><p>Formal analysis, Investigation</p></fn><fn fn-type="con" id="con5"><p>Methodology</p></fn><fn fn-type="con" id="con6"><p>Formal analysis, Investigation, Visualization, Methodology</p></fn><fn fn-type="con" id="con7"><p>Resources, Supervision, Funding acquisition, Writing – review and editing</p></fn><fn fn-type="con" id="con8"><p>Resources, Supervision, Funding acquisition, Writing – review and editing</p></fn><fn fn-type="con" id="con9"><p>Conceptualization, Resources, Supervision, Funding acquisition, Writing – review and editing</p></fn></fn-group><fn-group content-type="ethics-information"><title>Ethics</title><fn fn-type="other"><p>All procedures conformed to the National Institutes of Health Guidelines for the Care and Use of Laboratory Animals and were approved by the Stanford University Administrative Panel on Laboratory Animal Care. Mice were group housed up to a maximum of five adults per cage. Food and water were provided ad libitum and mice were maintained on a 12:12 LD cycle. Male and female mice were used in all experiments. Adult male and female mice (Cdh6CreER+;Ai32 and Cdh6CreER-;Ai32) aged 16 to 19 weeks were euthanised by isoflurane inhalation overdose in accordance with Flinders Animal Welfare Committee guidelines (ethics approval #4004). The protocol for animal euthanasia is approved by the National Health and Medical Research Council (NHMRC) Australian code for the care and use of animal for scientific purposes (8th edition, 2013) and recommendations from the NHMRC Guidelines to promote the wellbeing of animals used for scientific purposes (2008).</p></fn></fn-group></sec><sec sec-type="supplementary-material" id="s6"><title>Additional files</title><supplementary-material id="mdar"><label>MDAR checklist</label><media xlink:href="elife-101043-mdarchecklist1-v2.pdf" mimetype="application" mime-subtype="pdf"/></supplementary-material></sec><sec sec-type="data-availability" id="s7"><title>Data availability</title><p>Data have been uploaded and deposited in Zenodo (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5281/zenodo.14984617">https://doi.org/10.5281/zenodo.14984617</ext-link>) and Dryad (<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5061/dryad.66t1g1kbt">https://doi.org/10.5061/dryad.66t1g1kbt</ext-link>).</p><p>The following datasets were generated:</p><p><element-citation publication-type="data" specific-use="isSupplementedBy" id="dataset1"><person-group person-group-type="author"><name><surname>Gomez-Frittelli</surname><given-names>J</given-names></name><name><surname>Devienne</surname><given-names>G</given-names></name><name><surname>Travis</surname><given-names>L</given-names></name><name><surname>Kyloh</surname><given-names>MA</given-names></name><name><surname>Duan</surname><given-names>X</given-names></name><name><surname>Hibberd</surname><given-names>TJ</given-names></name><name><surname>Spencer</surname><given-names>NJ</given-names></name><name><surname>Huguenard</surname><given-names>JR</given-names></name><name><surname>Kaltschmidt</surname><given-names>JA</given-names></name></person-group><year iso-8601-date="2025">2025</year><data-title>Synaptic cell adhesion molecule Cdh6 identifies a class of sensory neurons with novel functions in colonic motility</data-title><source>Zenodo</source><pub-id pub-id-type="doi">10.5281/zenodo.14984617</pub-id></element-citation></p><p><element-citation publication-type="data" specific-use="isSupplementedBy" id="dataset2"><person-group person-group-type="author"><name><surname>Gomez-Frittelli</surname><given-names>J</given-names></name><name><surname>Devienne</surname><given-names>G</given-names></name><name><surname>Travis</surname><given-names>L</given-names></name><name><surname>Duan</surname><given-names>X</given-names></name><name><surname>Duan</surname><given-names>X</given-names></name><name><surname>Kyloh</surname><given-names>M</given-names></name><name><surname>Hibberd</surname><given-names>T</given-names></name><name><surname>Spencer</surname><given-names>N</given-names></name><name><surname>Huguenard</surname><given-names>J</given-names></name><name><surname>Kaltschmidt</surname><given-names>J</given-names></name></person-group><year iso-8601-date="2026">2026</year><data-title>Data from: Synaptic cell adhesion molecule Cdh6 identifies a class of sensory neurons with novel functions in colonic motility</data-title><source>Dryad Digital Repository</source><pub-id pub-id-type="doi">10.5061/dryad.66t1g1kbt</pub-id></element-citation></p><p>The following previously published dataset was used:</p><p><element-citation publication-type="data" specific-use="references" id="dataset3"><person-group person-group-type="author"><name><surname>Drokhlyansky</surname><given-names>E</given-names></name><name><surname>Smillie</surname><given-names>CS</given-names></name><name><surname>Wittenberghe</surname><given-names>NV</given-names></name><name><surname>Ericsson</surname><given-names>M</given-names></name><name><surname>Griffin</surname><given-names>GK</given-names></name><name><surname>Eraslan</surname><given-names>G</given-names></name><name><surname>Dionne</surname><given-names>D</given-names></name><name><surname>Cuoco</surname><given-names>MS</given-names></name><name><surname>Goder-Reiser</surname><given-names>MN</given-names></name><name><surname>Sharova</surname><given-names>T</given-names></name><name><surname>Kuksenko</surname><given-names>O</given-names></name><name><surname>Aguirre</surname><given-names>AJ</given-names></name><name><surname>Boland</surname><given-names>GM</given-names></name><name><surname>Graham</surname><given-names>D</given-names></name><name><surname>Rozenblatt-Rosen</surname><given-names>O</given-names></name><name><surname>Xavier</surname><given-names>RJ</given-names></name><name><surname>Regev</surname><given-names>A</given-names></name></person-group><year iso-8601-date="2020">2020</year><data-title>The human and mouse enteric nervous system at single cell resolution</data-title><source>Single Cell Portal</source><pub-id pub-id-type="accession" xlink:href="https://singlecell.broadinstitute.org/single_cell/study/SCP1038/the-human-and-mouse-enteric-nervous-system-at-single-cell-resolution">SCP1038</pub-id></element-citation></p></sec><ack id="ack"><title>Acknowledgements</title><p>We thank the members of the Kaltschmidt laboratory for experimental advice and discussions, Vanda Lennon (Mayo Clinic) for the HuC/D primary antibody and Beatriz G Robinson for 3D printing of organ chambers for electrophysiology. National Institute of General Medical Sciences of the National Institutes of Health Award T32GM120007 (JGF), National Institutes of Health Grant R01 EY030138 (XD), National Health and Medical Research Council (NHMRC) project grant 1156416 (NJS), Australian Research Council (ARC) Discovery Project grant DP220100070 (NJS), NINDS 5R01NS34774 (JRH), Wu Tsai Neurosciences Institute, Stanford University (JAK), Department of Neurosurgery, Stanford University (JAK), National Institutes of Health Grant R21 HD110950 (JAK), The Firmenich Foundation (JAK), The Carol and Eugene Ludwig Family Foundation (JAK), Stanford ADRC Developmental Project Grant (National Institutes of Health Grant P30AG066515) (JAK).</p></ack><ref-list><title>References</title><ref id="bib1"><element-citation publication-type="journal"><person-group 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A battery of <bold>compelling</bold> and comprehensive experimental findings suggests data from other species are likely translatable to mice, bridging the abundant literature from humans and other mammals into this experimentally tractable animal model. This work will be of interest to scientists studying the motor control of the colon and more generally the enteric neuromuscular system.</p></body></sub-article><sub-article article-type="referee-report" id="sa1"><front-stub><article-id pub-id-type="doi">10.7554/eLife.101043.3.sa1</article-id><title-group><article-title>Reviewer #1 (Public review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>Summary:</p><p>In their manuscript, Gomez-Frittelli and colleagues characterize the expression of cadherin6 (and -8) in colonic IPANs of mice. Moreover, they found that these cdh6-expressing IPANs are capable of initiating colonic motor complexes in the distal colon, but not proximal and midcolon. They support their claim by morphological, electrophysiological and optogenetic, and pharmacological experiments.</p><p>Strengths:</p><p>The work is very impressive and involves several genetic models and state-of-the-art physiological setups including respective controls. It is a very well-written manuscript that truly contributes to our understanding of GI-motility and its anatomical and physiological basis. The authors were able to convincingly answer their research questions with a wide range of methods without overselling their results.</p><p>Weaknesses:</p><p>The authors put quite some emphasis on stating that cdh6 is a synaptic protein (in the title and throughout the text), which interacts in a homophilic fashion. They deduct that cdh6 might be involved in IPAN-IPAN synapses (line 247ff.). However, Cdh6 does not only interact in synapses and is expressed by non-neuronal cells as well (see e.g., expression in the proximal tubuli of the kidney). Moreover, cdh6 does not only build homodimers, but also heterodimers with Chd9 as well as Cdh7, -10, and -14 (see e.g., Shimoyama et al. 2000, DOI: 10.1042/0264-6021:3490159). It would therefore be interesting to assess the expression pattern of cdh6-proteins using immunostainings in combination with synaptic markers to substantiate the authors' claim or at least add the possibility of cell-cell-interactions other than synapses to the discussion. Additionally, an immunostaining of cdh6 would confirm if the expression of tdTomato in smooth muscle cells of the cdh6-creERT model is valid or a leaky expression (false positive).</p><p>Comments on revisions:</p><p>The authors have updated their manuscript and have provided insights and discussions to my remarks.</p></body></sub-article><sub-article article-type="referee-report" id="sa2"><front-stub><article-id pub-id-type="doi">10.7554/eLife.101043.3.sa2</article-id><title-group><article-title>Reviewer #2 (Public review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>Summary:</p><p>Intrinsic primary afferent neurons are an interesting population of enteric neurons that transduce stimuli from the mucosa, initiate reflexive neurocircuitry involved in motor and secretory functions, and modulate gut immune responses. The morphology, neurochemical coding, and electrophysiological properties of these cells have been relatively well described in a long literature dating back to the late 1800's but questions remain regarding their roles in enteric neurocircuitry, potential subsets with unique functions, and contributions to disease. Here, the authors provide RNAscope, immunolabeling, electrophysiological, and organ function data characterizing IPANs in mice and suggest that Cdh6 is an additional marker of these cells.</p><p>Strengths:</p><p>This paper would likely be of interest to the enteric neuroscience community and increases information regarding the properties of IPANs in mice. These data are useful and suggest that prior data from studies of IPANs in other species are likely translatable to mice.</p><p>Weaknesses:</p><p>Major weaknesses:</p><p>(1) The novelty of this study is relatively limited. The main point of novelty suggests an additional marker of IPANs (Cdh6) that would add to the known list of markers for these cells. How useful this would be is unclear. Other main findings basically confirm that IPANs in mice display the same classical characteristics that have been known for many years from studies in guinea pigs, rats, mice and humans.</p><p>(2) Critical controls are needed to support the optogenetic experiments. Control experiments are needed to show that ChR2 expression (1) does not change the baseline properties of the neurons, (2) that stimulation with the chosen intensity of light elicits physiologically relevant responses in those neurons, and (3) that stimulation via ChR2 elicits comparable responses in IPANs in the different gut regions focused on here. These essential controls remain absent in the study and limit confidence in the data derived from this model.</p><p>(3) The motor effects observed in optogenetic experiments are difficult to understand in the absence of good controls for optogenetic control of the proposed neuron population (discussed above). It remains unclear how stimulating IPANs in the distal colon would generate retrograde CMCs while stimulating IPANs in the proximal colon did nothing. Key controls confirming that the optogentic stimulus was adequate, specific, and relevant are needed. In addition, better characterization of the Cdh6+ population of cells in both regions would be needed to understand the mechanisms underlying these effects.</p><p>(4) From the data shown, it is clear that expression driven by the Cdh6CreERT2 driver is not confined to IPANs. There is obviously expression of GFP and ChR2 in smooth muscle cells. This is a major limitation for the physiological experiments that attempt to use this model to specifically stimulate IPANs and assess changes in gut motor function. Better characterization of this model is needed and control experiments are necessary to assess whether functional ChR2 is expressed in cells beyond the proposed subtype of enteric IPANs.</p><p>(5) Some of the main conclusions of this study are overstated and claims of priority are made that are not true. For example, the authors state on lines 27-28 of the abstract that their findings provide the &quot;first demonstration of selective activation of a single neurochemical and functional class of enteric neurons&quot;. This is certainly not true since Gould et al (AJP-GIL 2019) expressed ChR2 in nitrergic enteric neurons and showed that activating those cells disrupted CMC activity. In fact, prior work by the authors themselves (Hibberd et al Gastro 2018) showed that activating calretinin neurons with ChR2 evoked motor responses. Work by other groups has used chemogenetics and optogenetics to show effects of activating multiple other classes of neurons in the gut.</p><p>(6) The electrophysiological characterization of mouse IPANs is useful but is limited to a small subset of Cdh6+ neurons in the distal colon myenteric plexus. Therefore, it remains unclear how well the properties reported here might reflect those of other Cdh6+ IPANs in the same or different regions. Similarly, blocking IH with ZD7288 affects all IPANs and does not add specific information regarding the role of the proposed Cdh6+ subtype.</p><p>(7) The submucosal plexus (SMP) also contains enteric IPANs and these were not included in the analysis of Cdh6 expression. Whether or not the proposed IPAN marker Cdh6 would be useful for identifying or targeting those cells remains unclear.</p><p>[Editor's note: The Reviewing Editor considers that further controls requested from the reviewers have largely been provided already in prior publications by other groups, as they concern specifically tools published years ago but in a different tissue context. Hence the methodology used to deliver the results reported here fall within the standard practices in the field. The comprehensive, multi-technique approach to the results is compelling in and of itself, and ought to suffice, rendering this work reproducible and therefore a basis for further research.]</p></body></sub-article><sub-article article-type="author-comment" id="sa3"><front-stub><article-id pub-id-type="doi">10.7554/eLife.101043.3.sa3</article-id><title-group><article-title>Author response</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Gomez-Frittelli</surname><given-names>Julieta</given-names></name><role specific-use="author">Author</role><aff><institution>Stanford University</institution><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Devienne</surname><given-names>Gabrielle Frederique</given-names></name><role specific-use="author">Author</role><aff><institution>Stanford Medicine</institution><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Travis</surname><given-names>Lee</given-names></name><role specific-use="author">Author</role><aff><institution>Flinders University</institution><addr-line><named-content content-type="city">Adelaide</named-content></addr-line><country>Australia</country></aff></contrib><contrib contrib-type="author"><name><surname>Kyloh</surname><given-names>Melinda A</given-names></name><role specific-use="author">Author</role><aff><institution>Flinders University</institution><addr-line><named-content content-type="city">Adelaide</named-content></addr-line><country>Australia</country></aff></contrib><contrib contrib-type="author"><name><surname>Duan</surname><given-names>Xin</given-names></name><role specific-use="author">Author</role><aff><institution>University of California, San Francisco</institution><addr-line><named-content content-type="city">San Francisco</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Hibberd</surname><given-names>Tim J</given-names></name><role specific-use="author">Author</role><aff><institution>Flinders University</institution><addr-line><named-content content-type="city">Adelaide</named-content></addr-line><country>Australia</country></aff></contrib><contrib contrib-type="author"><name><surname>Spencer</surname><given-names>Nick J</given-names></name><role specific-use="author">Author</role><aff><institution>Flinders University</institution><addr-line><named-content content-type="city">Bedford Park</named-content></addr-line><country>Australia</country></aff></contrib><contrib contrib-type="author"><name><surname>Huguenard</surname><given-names>John R</given-names></name><role specific-use="author">Author</role><aff><institution>Stanford University School of Medicine</institution><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Kaltschmidt</surname><given-names>Julia A</given-names></name><role specific-use="author">Author</role><aff><institution>Stanford Medicine</institution><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff></contrib></contrib-group></front-stub><body><p>The following is the authors’ response to the original reviews.</p><disp-quote content-type="editor-comment"><p><bold>Reviewer #1 (Public review):</bold></p><p>Summary:</p><p>In their manuscript, Gomez-Frittelli and colleagues characterize the expression of cadherin6 (and -8) in colonic IPANs of mice. Moreover, they found that these cdh6-expressing IPANs are capable of initiating colonic motor complexes in the distal colon, but not proximal and midcolon. They support their claim by morphological, electrophysiological, optogenetic, and pharmacological experiments.</p><p>Strengths:</p><p>The work is very impressive and involves several genetic models and state-of-the-art physiological setups including respective controls. It is a very well-written manuscript that truly contributes to our understanding of GI-motility and its anatomical and physiological basis. The authors were able to convincingly answer their research questions with a wide range of methods without overselling their results.</p></disp-quote><p>We greatly appreciate the reviewer’s time, careful reading and support of our study.</p><disp-quote content-type="editor-comment"><p>Weaknesses:</p><p>The authors put quite some emphasis on stating that cdh6 is a synaptic protein (in the title and throughout the text), which interacts in a homophilic fashion. They deduct that cdh6 might be involved in IPAN-IPAN synapses (line 247ff.). However, Cdh6 does not only interact in synapses and is expressed by non-neuronal cells as well (see e.g., expression in the proximal tubuli of the kidney). Moreover, cdh6 does not only build homodimers, but also heterodimers with Chd9 as well as Cdh7, -10, and -14 (see e.g., Shimoyama et al. 2000, DOI: 10.1042/02646021:3490159). It would therefore be interesting to assess the expression pattern of cdh6proteins using immunostainings in combination with synaptic markers to substantiate the authors' claim or at least add the possibility of cell-cell-interactions other than synapses to the discussion. Additionally, an immunostaining of cdh6 would confirm if the expression of tdTomato in smooth muscle cells of the cdh6-creERT model is valid or a leaky expression (false positive).</p></disp-quote><p>We agree with the reviewer that Cdh6 could be mediating some other cell-cell interaction besides synapses between IPANs, and we noted it in the discussion. Cdh6 primarily forms homodimers but, as the reviewer points out, has been known to also form heterodimers with some other cadherins. We performed RNAscope in the colonic myenteric plexus with Cdh7 and found no expression (data not shown). Cdh10 is suggested to have very low expression (Drokhlyansky et al., 2020), possibly in putative secretomotor vasodilator neurons, and Cdh14 has not been assayed in any RNAseq screens. We attempted to visualize Cdh6 protein via antibody staining (Duan et al., 2018) but our efforts did not result in sufficient signal or resolution to identify synapses in the ENS, which remain broadly challenging to assay. Similarly, immunostaining with Cdh6 antibody was unable to confirm Cdh6 protein in tdT-expressing muscle cells, or by RNAscope. We have addressed these caveats in the discussion section.</p><p>(1) E. Drokhlyansky, C. S. Smillie, N. V. Wittenberghe, M. Ericsson, G. K. Griffin, G. Eraslan, D. Dionne, M. S. Cuoco, M. N. Goder-Reiser, T. Sharova, O. Kuksenko, A. J. Aguirre, G. M. Boland, D. Graham, O. Rozenblatt-Rosen, R. J. Xavier, A. Regev, The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Cell 182, 1606-1622.e23 (2020).</p><p>(2) X. Duan, A. Krishnaswamy, M. A. Laboulaye, J. Liu, Y.-R. Peng, M. Yamagata, K. Toma, J. R. Sanes, Cadherin Combinations Recruit Dendrites of Distinct Retinal Neurons to a Shared Interneuronal Scaffold. Neuron 99, 1145-1154.e6 (2018).</p><disp-quote content-type="editor-comment"><p><bold>Reviewer #2 (Public review):</bold></p><p>Summary:</p><p>Intrinsic primary afferent neurons are an interesting population of enteric neurons that transduce stimuli from the mucosa, initiate reflexive neurocircuitry involved in motor and secretory functions, and modulate gut immune responses. The morphology, neurochemical coding, and electrophysiological properties of these cells have been relatively well described in a long literature dating back to the late 1800's but questions remain regarding their roles in enteric neurocircuitry, potential subsets with unique functions, and contributions to disease. Here, the authors provide RNAscope, immunolabeling, electrophysiological, and organ function data characterizing IPANs in mice and suggest that Cdh6 is an additional marker of these cells.</p><p>Strengths:</p><p>This paper would likely be of interest to a focused enteric neuroscience audience and increase information regarding the properties of IPANs in mice. These data are useful and suggest that prior data from studies of IPANs in other species are likely translatable to mice.</p></disp-quote><p>We appreciate the reviewer’s support of our study and insightful critiques for its improvement.</p><disp-quote content-type="editor-comment"><p>Weaknesses:</p><p>The advance presented here beyond what is already known is minimal. Some of the core conclusions are overstated and there are multiple other major issues that limit enthusiasm. Key control experiments are lacking and data do not specifically address the properties of the proposed Cdh6+ population.</p><p>Major weaknesses:</p><p>(1) The novelty of this study is relatively low. The main point of novelty suggests an additional marker of IPANs (Cdh6) that would add to the known list of markers for these cells. How useful this would be is unclear. Other main findings basically confirm that IPANs in mice display the same classical characteristics that have been known for many years from studies in guinea pigs, rats, mice and humans.</p></disp-quote><p>We appreciate the already existing markers for IPANs in the ENS and the existing literature characterizing these neurons. The primary intent of this study was to use these well-established characteristics of IPANs in both mice and other species to characterize Cdh6-expressing neurons in the mouse myenteric plexus and confirm their classification as IPANs.</p><disp-quote content-type="editor-comment"><p>(2) Some of the main conclusions of this study are overstated and claims of priority are made that are not true. For example, the authors state in lines 27-28 of the abstract that their findings provide the &quot;first demonstration of selective activation of a single neurochemical and functional class of enteric neurons&quot;. This is certainly not true since Gould et al (AJP-GIL 2019) expressed ChR2 in nitrergic enteric neurons and showed that activating those cells disrupted CMC activity. In fact, prior work by the authors themselves (Hibberd et al., Gastro 2018) showed that activating calretinin neurons with ChR2 evoked motor responses. Work by other groups has used chemogenetics and optogenetics to show the effects of activating multiple other classes of neurons in the gut.</p></disp-quote><p>We thank the reviewer for bringing up this important point and apologize if our wording was not clear. Whilst single neurochemical classes of enteric neurons have been manipulated to alter gut functions, all such instances to date do not represent manipulation of a single functional class of enteric neurons. In the given examples, multiple functional classes are activated utilizing the same neurotransmitter, as NOS and calretinin are each expressed to varying degrees across putative motor neurons, interneurons and IPANs. In contrast, Chd6 is restricted to IPANs and therefore this study is the first optogenetic investigation of enteric neurons from a single putative functional class. Our abstract and discussion emphasizes this point and differentiates this study from those previous.</p><disp-quote content-type="editor-comment"><p>(3) Critical controls are needed to support the optogenetic experiments. Control experiments are needed to show that ChR2 expression (a) does not change the baseline properties of the neurons, (b) that stimulation with the chosen intensity of light elicits physiologically relevant responses in those neurons, and (c) that stimulation via ChR2 elicits comparable responses in IPANs in the different gut regions focused on here.</p></disp-quote><p>We completely agree controls are essential. However, our paper is not the first to express ChR2 in enteric neurons. Authors of our paper have shown in Hibberd <italic>et al.</italic> 2018 that expression of ChR2 in a heterogeneous population of myenteric neurons did not change network properties of the myenteric plexus. This was demonstrated in the lack of change in control CMC characteristics in mice expressing ChR2 under basal conditions (without blue light exposure). Regarding question (b), that it should be shown that stimulation with the chosen intensity of light elicits physiologically relevant responses in those neurons. We show the restricted expression of ChR2 in IPANs and that motor responses (to blue light) are blocked by selective nerve conduction blockade.</p><p>Regarding question (c), that our study should demonstrate that stimulation via ChR2 elicits comparable responses in IPANs in the different gut regions. We would not expect each region of the gut to behave comparably. This is because the different gut regions (i.e. proximal, mid, distal) are very different anatomically, as is anatomy of the myenteric plexus and myenteric ganglia between each region, including the density of IPANs within each ganglia, in addition to the presence of different patterns of electrical and mechanical activity [Spencer <italic>et al.,</italic> 2020]. Hence, it is difficult to expect that between regions stimulation of ChR2 should induce similar physiological responses. The motor output we record in our study (CMCs) is a unified motor program that involves the temporal coordination of hundreds of thousands of enteric neurons and a complex neural circuit that we have previously characterized [Spencer <italic>et al.</italic>, 2018]. But, never has any study until now been able to selectively stimulate a single functional class of enteric neurons (with light) to avoid indiscriminate activation of other classes of neurons.</p><p>(1) T. J. Hibberd, J. Feng, J. Luo, P. Yang, V. K. Samineni, R. W. Gereau, N. Kelley, H. Hu, N. J. Spencer, Optogenetic Induction of Colonic Motility in Mice. Gastroenterology 155, 514-528.e6 (2018).</p><p>(2) N. J. Spencer, L. Travis, L. Wiklendt, T. J. Hibberd, M. Costa, P. Dinning, H. Hu, Diversity of neurogenic smooth muscle electrical rhythmicity in mouse proximal colon. American Journal of Physiology-Gastrointestinal and Liver Physiology 318, G244–G253 (2020).</p><p>(3) N. J. Spencer, T. J. Hibberd, L. Travis, L. Wiklendt, M. Costa, H. Hu, S. J. Brookes, D. A. Wattchow, P. G. Dinning, D. J. Keating, J. Sorensen, Identification of a Rhythmic Firing Pattern in the Enteric Nervous System That Generates Rhythmic Electrical Activity in Smooth Muscle. The Journal of Neuroscience 38, 5507–5522 (2018).</p><disp-quote content-type="editor-comment"><p>(4) The electrophysiological characterization of mouse IPANs is useful but this is a basic characterization of any IPAN and really says nothing specifically about Cdh6+ neurons. The electrophysiological characterization was also only done in a small fraction of colonic IPANs, and it is not clear if these represent cell properties in the distal colon or proximal colon, and whether these properties might be extrapolated to IPANs in the different regions. Similarly, blocking IH with ZD7288 affects all IPANs and does not add specific information regarding the role of the proposed Cdh6+ subtype.</p></disp-quote><p>Our electrophysiological characterization was guided to be within a subset of Cdh6+ neurons by Hb9:GFP expression. As in the prior comment (1) above, we used these experiments to confirm classification of Cdh6+ (Hb9:GFP+) neurons in the distal colon as IPANs. We have clarified in the results and methods that these experiments were performed in the distal colon and agree that we cannot extrapolate that these properties are also representative of IPANs in the proximal colon. We apologize that this was confusing. Finally, we agree with the reviewer that ZD7288 affects all IPANs in the ENS and have clarified this in the text.</p><disp-quote content-type="editor-comment"><p>(5) Why SMP IPANs were not included in the analysis of Cdh6 expression is a little puzzling. IPANs are present in the SMP of the small intestine and colon, and it would be useful to know if this proposed marker is also present in these cells.</p></disp-quote><p>We agree with the reviewer. In addition to characterizing Cdh6 in the myenteric plexus, it would be interesting to query if sensory neurons located within the SMP also express Cdh6. Our preliminary data (n=2) show ~6-12% tdT/Hu neurons in Cdh6-tdT ileum and colon (data not shown). We have added a sentence to the discussion.</p><disp-quote content-type="editor-comment"><p>(6) The emphasis on IH being a rhythmicity indicator seems a bit premature. There is no evidence to suggest that IH and IT are rhythm-generating currents in the ENS.</p></disp-quote><p>Regarding the statement there is no evidence to suggest that IH and IT are rhythm-generating currents in the ENS. We agree with the reviewer that evidence of rhythm generation by IH and IT in the ENS has not been explicitly confirmed. We are confident the reviewer agrees that an absence of evidence is not evidence of absence, although the presence of IH has been well described in enteric neurons. We have modified the text in the results to indicate more clearly that IH and IT are known to participate in rhythm generation in thalamocortical circuits, though their roles in the ENS remain unknown. Our discussion of the potential role of IH or IT in rhythm generation or oscillatory firing of the ENS is constrained to speculation in the discussion section of the text.</p><disp-quote content-type="editor-comment"><p>(7) As the authors point out in the introduction and discuss later on, Type II Cadherins such as Cdh6 bind homophillically to the same cadherin at both pre- and post-synapse. The apparent enrichment of Cdh6 in IPANs would suggest extensive expression in synaptic terminals that would also suggest extensive IPAN-IPAN connections unless other subtypes of neurons express this protein. Such synaptic connections are not typical of IPANs and raise the question of whether or not IPANs actually express the functional protein and if so, what might be its role. Not having this information limits the usefulness of this as a proposed marker.</p></disp-quote><p>We agree with the reviewer that the proposed IPAN-IPAN connection is novel although it has been proposed before (Kunze et al., 1993). As detailed in our response to Reviewer #1, we attempted to confirm Cdh6 protein expression, but were unsuccessful, due to insufficient signal and resolution. We therefore discuss potential IPAN interconnectivity in the discussion, in the context of contrasting literature.</p><p>(1) W. A. A. Kunze, J. B. Furness, J. C. Bornstein, Simultaneous intracellular recordings from enteric neurons reveal that myenteric ah neurons transmit via slow excitatory postsynaptic potentials. Neuroscience 55, 685–694 (1993).</p><disp-quote content-type="editor-comment"><p>(8) Experiments shown in Figures 6J and K use a tethered pellet to drive motor responses. By definition, these are not CMCs as stated by the authors.</p></disp-quote><p>The reviewer makes a valid criticism as to the terminology, since tethered pellet experiments do not record propagation. We believe the periodic bouts of propulsive force on the pellet is triggered by the same activity underlying the CMC. In our experience, these activities have similar periodicity, force and identical pharmacological properties. Consistent with this, we also tested full colons (n = 2) set up for typical CMC recordings by multiple force transducers, finding that CMCs were abolished by ZD7288, similar to fixed pellet recordings (data not shown).</p><disp-quote content-type="editor-comment"><p>(9) The data from the optogenetic experiments are difficult to understand. How would stimulating IPANs in the distal colon generate retrograde CMCs and stimulating IPANs in the proximal colon do nothing? Additional characterization of the Cdh6+ population of cells is needed to understand the mechanisms underlying these effects.</p></disp-quote><p>We agree that the different optogenetic responses in the proximal and distal colon are challenging to interpret, but perhaps not surprising in the wider context. It is not only possible that the different optogenetic responses in this study reflect regional differences in the Chd6+ neuronal populations, but also differences in neural circuits within these gut regions. A study some time ago by the authors showed that electrical stimulation of the proximal mouse colon was unable to evoke a retrograde (aborally) propagating CMC (Spencer, Bywater, 2002), but stimulation of the distal colon was readily able to. We concluded that at the oral lesion site there is a preferential bias of descending inhibitory nerve projections, since the ascending excitatory pathways have been cut off. In contrast, stimulation of the distal colon was readily able to activate an ascending excitatory neural pathway, and hence induce the complex CMC circuits required to generate an orally propagating CMC. Indeed, other recent studies have added to a growing body of evidence for significant differences in the behaviors and neural circuits of the two regions (Li et al., 2019, Costa et al., 2021a, Costa et al., 2021b, Nestor-Kalinoski et al., 2022). We have expanded this discussion.</p><p>(1) N. J. Spencer, R. A. Bywater, Enteric nerve stimulation evokes a premature colonic migrating motor complex in mouse. Neurogastroenterology &amp; Motility 14, 657–665 (2002).</p><p>(2) Li Z, Hao MM, Van den Haute C, Baekelandt V, Boesmans W, Vanden Berghe P, Regional complexity in enteric neuron wiring reflects diversity of motility patterns in the mouse large intestine. Elife 8:e42914 (2019).</p><p>(3) Costa M, Keightley LJ, Hibberd TJ, Wiklendt L, Dinning PG, Brookes SJ, Spencer NJ, Motor patterns in the proximal and distal mouse colon which underlie formation and propulsion of feces. Neurogastroenterology &amp; Motility e14098 (2021a).</p><p>(4) Costa M, Keightley LJ, Hibberd TJ, Wiklendt L, Smolilo DJ, Dinning PG, Brookes SJ, Spencer NJ, Characterization of alternating neurogenic motor patterns in mouse colon. Neurogastroenterology &amp; Motility 33:e14047 (2021b).</p><p>(5) Nestor-Kalinoski A, Smith-Edwards KM, Meerschaert K, Margiotta JF, Rajwa B, Davis BM, Howard MJ, Unique Neural Circuit Connectivity of Mouse Proximal, Middle, and Distal Colon Defines Regional Colonic Motor Patterns. Cellular and Molecular Gastroenterology and Hepatology 13:309-337.e303 (2022).</p><disp-quote content-type="editor-comment"><p><bold>Recommendations for the Authors:</bold></p><p><bold>Reviewer #1 (Recommendations for the authors):</bold></p><p>As mentioned above, immunolocalization of cdh6 would be helpful to substantiate the claims regarding IPAN-IPAN synapses.</p></disp-quote><p>As mentioned in our response to both reviewers’ public reviews, we attempted to visualize Cdh6 protein via antibody staining (Duan et al., 2018), but our efforts did not result in sufficient signal or resolution to identify Cdh6+ synapses.</p><p>(1) X. Duan, A. Krishnaswamy, M. A. Laboulaye, J. Liu, Y.-R. Peng, M. Yamagata, K. Toma, J. R. Sanes, Cadherin Combinations Recruit Dendrites of Distinct Retinal Neurons to a Shared Interneuronal Scaffold. Neuron 99, 1145-1154.e6 (2018).</p><disp-quote content-type="editor-comment"><p><bold>Reviewer #2 (Recommendations for the authors):</bold></p><p>(1) The authors repeatedly refer to IPANs as &quot;sensory&quot; neurons (e.g. in title, abstract, and introduction) but there is some debate regarding whether these cells are truly &quot;sensory&quot; because the information they convey never reaches sensory perception. This is why they have classically been referred to as intrinsic primary afferent (IPAN) neurons. It would be more appropriate to stick with this terminology unless the authors have compelling data showing that information detected by IPANs reaches the sensory cortex.</p></disp-quote><p>We thank the reviewer for their comment, but respectfully disagree. The term “sensory neuron” is well established in the ENS. The first definitive proof that “sensory neurons” exist in the ENS was published in Kunze et al., 1995. We note that this paper did not use the word “IPAN” but used the term “sensory neuron”. Furthermore, mechanosensory neurons were published in Spencer and Smith (2004).</p><p>Regarding the reviewer’s comment that the authors would need compelling data showing that information detected by IPANs reaches the sensory cortex before the term “sensory neuron” should be valid, it is important to note that many sensory neurons do not provide direct information to the cortex.</p><p>(1) W. A. A. Kunze, J. C. Bornstein, J. B. Furness, Identification of sensory nerve cells in a peripheral organ (the intestine) of a mammal. Neuroscience 66, 1–4 (1995).</p><p>(2) N. J. Spencer, T. K. Smith, Mechanosensory S-neurons rather than AH-neurons appear to generate a rhythmic motor pattern in guinea-pig distal colon. The Journal of Physiology 558, 577–596 (2004).</p><disp-quote content-type="editor-comment"><p>(2) Important information regarding the gut region shown and other details are absent from many figure legends.</p></disp-quote><p>We apologize for this omission. We have updated the figure legends to include information on gut regions.</p></body></sub-article></article>