2026-03-04 01:56:34,401 Running on GPU
2026-03-04 01:56:34,405 Found 6 citations for tools or databases
2026-03-04 01:56:34,405 Query 1/1: svep1_tie1_03032026_603b3 (length 958)
2026-03-04 01:56:40,612 Setting max_seq=508, max_extra_seq=2048
2026-03-04 01:58:42,877 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.6 pTM=0.428 ipTM=0.249
2026-03-04 02:00:05,857 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.5 pTM=0.505 ipTM=0.557 tol=21.3
2026-03-04 02:00:23,616 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.5 pTM=0.523 ipTM=0.624 tol=6.18
2026-03-04 02:00:41,369 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.8 pTM=0.528 ipTM=0.645 tol=3.47
2026-03-04 02:00:59,140 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.2 pTM=0.532 ipTM=0.658 tol=2.04
2026-03-04 02:01:16,922 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.1 pTM=0.532 ipTM=0.659 tol=1.39
2026-03-04 02:01:34,692 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.9 pTM=0.533 ipTM=0.662 tol=3.56
2026-03-04 02:01:52,464 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.2 pTM=0.534 ipTM=0.664 tol=4.37
2026-03-04 02:02:10,222 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=82.3 pTM=0.534 ipTM=0.66 tol=3.47
2026-03-04 02:02:27,972 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=82.1 pTM=0.533 ipTM=0.661 tol=2.77
2026-03-04 02:02:45,750 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=82.5 pTM=0.536 ipTM=0.665 tol=2.53
2026-03-04 02:03:03,535 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=82.3 pTM=0.533 ipTM=0.658 tol=2
2026-03-04 02:03:21,307 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=82.2 pTM=0.533 ipTM=0.656 tol=1.59
2026-03-04 02:03:39,071 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=82.2 pTM=0.533 ipTM=0.656 tol=0.99
2026-03-04 02:03:56,821 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=82.3 pTM=0.533 ipTM=0.657 tol=0.94
2026-03-04 02:04:14,584 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=82.3 pTM=0.534 ipTM=0.658 tol=1.58
2026-03-04 02:04:32,346 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=82.5 pTM=0.534 ipTM=0.66 tol=0.768
2026-03-04 02:04:50,090 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=82.3 pTM=0.535 ipTM=0.662 tol=1.51
2026-03-04 02:05:07,868 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=82.2 pTM=0.532 ipTM=0.657 tol=1.39
2026-03-04 02:05:25,608 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=82.3 pTM=0.533 ipTM=0.656 tol=1.62
2026-03-04 02:05:43,364 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=82.4 pTM=0.532 ipTM=0.656 tol=2.33
2026-03-04 02:05:44,816 alphafold2_multimer_v3_model_1_seed_000 took 539.6s (20 recycles)
2026-03-04 02:06:03,593 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.8 pTM=0.523 ipTM=0.629
2026-03-04 02:06:21,351 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.2 pTM=0.543 ipTM=0.665 tol=5.47
2026-03-04 02:06:39,096 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.6 pTM=0.546 ipTM=0.658 tol=1.64
2026-03-04 02:06:56,851 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=83.7 pTM=0.544 ipTM=0.663 tol=5.27
2026-03-04 02:07:14,589 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=83.9 pTM=0.547 ipTM=0.666 tol=2.08
2026-03-04 02:07:32,331 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=83.9 pTM=0.546 ipTM=0.669 tol=1.5
2026-03-04 02:07:50,091 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=83.8 pTM=0.545 ipTM=0.669 tol=1.54
2026-03-04 02:08:07,843 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=83.9 pTM=0.548 ipTM=0.672 tol=1.59
2026-03-04 02:08:25,564 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=83.8 pTM=0.547 ipTM=0.667 tol=1.04
2026-03-04 02:08:43,310 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=83.7 pTM=0.544 ipTM=0.668 tol=1.61
2026-03-04 02:09:01,054 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.1 pTM=0.553 ipTM=0.673 tol=1.63
2026-03-04 02:09:18,799 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=83.9 pTM=0.546 ipTM=0.667 tol=1.24
2026-03-04 02:09:36,540 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=83.9 pTM=0.55 ipTM=0.671 tol=1.39
2026-03-04 02:09:54,271 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=83.8 pTM=0.547 ipTM=0.67 tol=1.3
2026-03-04 02:10:12,029 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=83.7 pTM=0.544 ipTM=0.667 tol=0.719
2026-03-04 02:10:29,768 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=83.8 pTM=0.546 ipTM=0.668 tol=1.06
2026-03-04 02:10:47,497 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=83.8 pTM=0.548 ipTM=0.669 tol=0.87
2026-03-04 02:11:05,221 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=83.8 pTM=0.547 ipTM=0.671 tol=1.06
2026-03-04 02:11:22,971 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=83.7 pTM=0.543 ipTM=0.665 tol=1.24
2026-03-04 02:11:40,699 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=83.7 pTM=0.547 ipTM=0.663 tol=2.1
2026-03-04 02:11:58,428 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=83.9 pTM=0.547 ipTM=0.665 tol=1.23
2026-03-04 02:11:58,962 alphafold2_multimer_v3_model_2_seed_000 took 373.1s (20 recycles)
2026-03-04 02:12:17,761 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.2 pTM=0.425 ipTM=0.145
2026-03-04 02:12:35,451 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.3 pTM=0.537 ipTM=0.635 tol=12.7
2026-03-04 02:12:53,207 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.5 pTM=0.53 ipTM=0.66 tol=6.5
2026-03-04 02:13:10,940 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.6 pTM=0.542 ipTM=0.659 tol=3.92
2026-03-04 02:13:28,719 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.1 pTM=0.533 ipTM=0.659 tol=6.74
2026-03-04 02:13:46,454 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.8 pTM=0.537 ipTM=0.655 tol=8.45
2026-03-04 02:14:04,224 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.8 pTM=0.537 ipTM=0.658 tol=2.52
2026-03-04 02:14:21,981 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.9 pTM=0.535 ipTM=0.659 tol=1.61
2026-03-04 02:14:39,700 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=81.7 pTM=0.542 ipTM=0.651 tol=4.55
2026-03-04 02:14:57,445 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.9 pTM=0.535 ipTM=0.654 tol=8.73
2026-03-04 02:15:15,233 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=82 pTM=0.533 ipTM=0.66 tol=2.89
2026-03-04 02:15:32,964 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.8 pTM=0.542 ipTM=0.65 tol=5.9
2026-03-04 02:15:50,738 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=81.8 pTM=0.534 ipTM=0.657 tol=1.43
2026-03-04 02:16:08,506 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=81.8 pTM=0.535 ipTM=0.657 tol=3.4
2026-03-04 02:16:26,279 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=81.8 pTM=0.529 ipTM=0.652 tol=5.54
2026-03-04 02:16:44,102 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=81.6 pTM=0.531 ipTM=0.653 tol=7.28
2026-03-04 02:17:01,858 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=81.6 pTM=0.531 ipTM=0.652 tol=2.4
2026-03-04 02:17:19,612 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=81.8 pTM=0.54 ipTM=0.657 tol=5.02
2026-03-04 02:17:37,388 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=81.8 pTM=0.529 ipTM=0.649 tol=4.78
2026-03-04 02:17:55,141 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=81.5 pTM=0.531 ipTM=0.652 tol=7.09
2026-03-04 02:18:12,891 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=81.6 pTM=0.535 ipTM=0.649 tol=1.55
2026-03-04 02:18:13,426 alphafold2_multimer_v3_model_3_seed_000 took 373.4s (20 recycles)
2026-03-04 02:18:32,269 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.9 pTM=0.524 ipTM=0.628
2026-03-04 02:18:50,063 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=82.3 pTM=0.534 ipTM=0.667 tol=6.13
2026-03-04 02:19:07,848 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.7 pTM=0.538 ipTM=0.678 tol=2.54
2026-03-04 02:19:25,621 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.8 pTM=0.537 ipTM=0.669 tol=1.51
2026-03-04 02:19:43,405 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.9 pTM=0.539 ipTM=0.668 tol=0.825
2026-03-04 02:20:01,170 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.8 pTM=0.539 ipTM=0.669 tol=0.795
2026-03-04 02:20:18,960 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.6 pTM=0.531 ipTM=0.667 tol=3.75
2026-03-04 02:20:36,734 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83 pTM=0.538 ipTM=0.666 tol=5.78
2026-03-04 02:20:54,484 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.9 pTM=0.538 ipTM=0.66 tol=3.23
2026-03-04 02:21:12,281 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=82.9 pTM=0.537 ipTM=0.667 tol=7.84
2026-03-04 02:21:30,048 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.9 pTM=0.539 ipTM=0.667 tol=0.748
2026-03-04 02:21:47,800 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=82.6 pTM=0.534 ipTM=0.664 tol=2.47
2026-03-04 02:22:05,579 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=82.9 pTM=0.54 ipTM=0.67 tol=2.8
2026-03-04 02:22:23,336 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=82.9 pTM=0.542 ipTM=0.667 tol=1.24
2026-03-04 02:22:41,094 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.8 pTM=0.538 ipTM=0.661 tol=0.854
2026-03-04 02:22:58,874 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=82.8 pTM=0.535 ipTM=0.662 tol=1.67
2026-03-04 02:23:16,643 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=82.8 pTM=0.536 ipTM=0.663 tol=1.17
2026-03-04 02:23:34,422 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=82.9 pTM=0.538 ipTM=0.666 tol=1.02
2026-03-04 02:23:52,187 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=82.7 pTM=0.534 ipTM=0.656 tol=1.07
2026-03-04 02:24:09,935 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=82.7 pTM=0.535 ipTM=0.657 tol=1.72
2026-03-04 02:24:27,709 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=82.5 pTM=0.535 ipTM=0.656 tol=1.04
2026-03-04 02:24:28,244 alphafold2_multimer_v3_model_4_seed_000 took 373.8s (20 recycles)
2026-03-04 02:24:47,089 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.7 pTM=0.546 ipTM=0.683
2026-03-04 02:25:04,890 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.2 pTM=0.535 ipTM=0.665 tol=3.64
2026-03-04 02:25:22,703 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.2 pTM=0.532 ipTM=0.662 tol=7.27
2026-03-04 02:25:40,532 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.4 pTM=0.529 ipTM=0.653 tol=2.54
2026-03-04 02:25:58,320 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.4 pTM=0.532 ipTM=0.654 tol=4.96
2026-03-04 02:26:16,117 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.6 pTM=0.534 ipTM=0.652 tol=7.33
2026-03-04 02:26:33,916 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.3 pTM=0.531 ipTM=0.656 tol=7.34
2026-03-04 02:26:51,729 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.5 pTM=0.53 ipTM=0.654 tol=4.55
2026-03-04 02:27:09,518 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.2 pTM=0.532 ipTM=0.648 tol=3.75
2026-03-04 02:27:27,286 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=82.6 pTM=0.543 ipTM=0.649 tol=10.7
2026-03-04 02:27:45,052 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.6 pTM=0.54 ipTM=0.655 tol=1.62
2026-03-04 02:28:02,846 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=82.2 pTM=0.534 ipTM=0.646 tol=8.6
2026-03-04 02:28:20,628 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=82.4 pTM=0.534 ipTM=0.652 tol=4.45
2026-03-04 02:28:38,429 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=82.2 pTM=0.531 ipTM=0.647 tol=3.12
2026-03-04 02:28:56,212 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=82.2 pTM=0.529 ipTM=0.646 tol=1.2
2026-03-04 02:29:14,015 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=82.3 pTM=0.531 ipTM=0.647 tol=2.19
2026-03-04 02:29:31,772 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=82.5 pTM=0.539 ipTM=0.644 tol=8.88
2026-03-04 02:29:49,560 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=82.5 pTM=0.54 ipTM=0.649 tol=0.878
2026-03-04 02:30:07,380 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=82.3 pTM=0.527 ipTM=0.643 tol=15.4
2026-03-04 02:30:25,195 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=82.2 pTM=0.529 ipTM=0.642 tol=3.75
2026-03-04 02:30:42,994 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=82.2 pTM=0.526 ipTM=0.642 tol=2.23
2026-03-04 02:30:43,534 alphafold2_multimer_v3_model_5_seed_000 took 374.2s (20 recycles)
2026-03-04 02:30:44,550 reranking models by 'multimer' metric
2026-03-04 02:32:46,274 Relaxation took 121.7s
2026-03-04 02:32:46,275 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.9 pTM=0.547 ipTM=0.665 actifpTM=0.982
2026-03-04 02:33:34,806 Relaxation took 48.5s
2026-03-04 02:33:34,807 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.5 pTM=0.535 ipTM=0.656 actifpTM=0.982
2026-03-04 02:34:22,088 Relaxation took 47.3s
2026-03-04 02:34:22,089 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.4 pTM=0.532 ipTM=0.656 actifpTM=0.979
2026-03-04 02:35:44,031 Relaxation took 81.9s
2026-03-04 02:35:44,031 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.6 pTM=0.535 ipTM=0.649 actifpTM=0.979
2026-03-04 02:36:29,588 Relaxation took 45.6s
2026-03-04 02:36:29,588 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.2 pTM=0.526 ipTM=0.642 actifpTM=0.984
2026-03-04 02:36:34,183 Done
