2026-03-04 02:47:15,937 Running on GPU
2026-03-04 02:47:15,940 Found 6 citations for tools or databases
2026-03-04 02:47:15,940 Query 1/1: svep1_tie2_03032026_17890 (length 936)
2026-03-04 02:47:21,820 Setting max_seq=508, max_extra_seq=2048
2026-03-04 02:49:01,721 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.1 pTM=0.481 ipTM=0.176
2026-03-04 02:50:10,223 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.2 pTM=0.572 ipTM=0.195 tol=8.24
2026-03-04 02:50:26,415 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.3 pTM=0.612 ipTM=0.338 tol=3.63
2026-03-04 02:50:42,622 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.2 pTM=0.613 ipTM=0.344 tol=1.21
2026-03-04 02:50:58,822 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.9 pTM=0.606 ipTM=0.339 tol=0.795
2026-03-04 02:51:15,016 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.8 pTM=0.599 ipTM=0.319 tol=0.387
2026-03-04 02:51:17,354 alphafold2_multimer_v3_model_1_seed_000 took 231.0s (5 recycles)
2026-03-04 02:51:34,601 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.5 pTM=0.536 ipTM=0.194
2026-03-04 02:51:50,804 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.7 pTM=0.593 ipTM=0.271 tol=6.82
2026-03-04 02:52:07,034 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=82.3 pTM=0.596 ipTM=0.244 tol=0.872
2026-03-04 02:52:23,239 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=82.7 pTM=0.594 ipTM=0.238 tol=0.606
2026-03-04 02:52:39,441 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.7 pTM=0.591 ipTM=0.231 tol=0.46
2026-03-04 02:52:39,957 alphafold2_multimer_v3_model_2_seed_000 took 81.6s (4 recycles)
2026-03-04 02:52:57,180 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81 pTM=0.595 ipTM=0.309
2026-03-04 02:53:13,410 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=83.4 pTM=0.632 ipTM=0.378 tol=3.63
2026-03-04 02:53:29,609 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.4 pTM=0.649 ipTM=0.485 tol=1.36
2026-03-04 02:53:45,835 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.9 pTM=0.658 ipTM=0.503 tol=0.458
2026-03-04 02:53:46,354 alphafold2_multimer_v3_model_3_seed_000 took 65.4s (3 recycles)
2026-03-04 02:54:03,595 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.3 pTM=0.562 ipTM=0.322
2026-03-04 02:54:19,839 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.8 pTM=0.583 ipTM=0.199 tol=4.19
2026-03-04 02:54:36,117 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.5 pTM=0.571 ipTM=0.152 tol=13.8
2026-03-04 02:54:52,359 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81.7 pTM=0.585 ipTM=0.221 tol=11.8
2026-03-04 02:55:08,585 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.2 pTM=0.58 ipTM=0.217 tol=1.81
2026-03-04 02:55:24,829 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=81.2 pTM=0.576 ipTM=0.168 tol=2.76
2026-03-04 02:55:41,071 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=81.6 pTM=0.578 ipTM=0.184 tol=1.78
2026-03-04 02:55:57,307 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81.6 pTM=0.573 ipTM=0.174 tol=1.1
2026-03-04 02:56:13,602 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.9 pTM=0.573 ipTM=0.152 tol=7.93
2026-03-04 02:56:29,841 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=81.9 pTM=0.583 ipTM=0.226 tol=8.02
2026-03-04 02:56:46,109 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82 pTM=0.577 ipTM=0.186 tol=2.1
2026-03-04 02:57:02,369 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.8 pTM=0.572 ipTM=0.158 tol=7.98
2026-03-04 02:57:18,635 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81 pTM=0.574 ipTM=0.16 tol=4.63
2026-03-04 02:57:34,867 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=81.9 pTM=0.576 ipTM=0.175 tol=4.48
2026-03-04 02:57:51,138 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.9 pTM=0.572 ipTM=0.152 tol=2.98
2026-03-04 02:58:07,377 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=81.9 pTM=0.581 ipTM=0.208 tol=4.21
2026-03-04 02:58:23,621 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=82.2 pTM=0.578 ipTM=0.18 tol=1.74
2026-03-04 02:58:39,893 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.7 pTM=0.574 ipTM=0.159 tol=8.18
2026-03-04 02:58:56,188 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=81.4 pTM=0.577 ipTM=0.163 tol=6.48
2026-03-04 02:59:12,440 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=82.4 pTM=0.581 ipTM=0.206 tol=4.03
2026-03-04 02:59:28,691 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=81.8 pTM=0.575 ipTM=0.163 tol=3.03
2026-03-04 02:59:29,201 alphafold2_multimer_v3_model_4_seed_000 took 341.8s (20 recycles)
2026-03-04 02:59:46,490 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.52 ipTM=0.179
2026-03-04 03:00:02,750 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.2 pTM=0.58 ipTM=0.203 tol=6.14
2026-03-04 03:00:19,010 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.4 pTM=0.578 ipTM=0.192 tol=11.5
2026-03-04 03:00:35,255 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.7 pTM=0.599 ipTM=0.294 tol=2.64
2026-03-04 03:00:51,434 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=83.5 pTM=0.626 ipTM=0.405 tol=1.1
2026-03-04 03:01:07,624 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=83.9 pTM=0.626 ipTM=0.414 tol=0.689
2026-03-04 03:01:23,825 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84 pTM=0.635 ipTM=0.435 tol=1.02
2026-03-04 03:01:40,023 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.2 pTM=0.634 ipTM=0.44 tol=0.368
2026-03-04 03:01:40,538 alphafold2_multimer_v3_model_5_seed_000 took 130.3s (7 recycles)
2026-03-04 03:01:41,530 reranking models by 'multimer' metric
2026-03-04 03:02:32,907 Relaxation took 51.4s
2026-03-04 03:02:32,907 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84.9 pTM=0.658 ipTM=0.503 actifpTM=0.772
2026-03-04 03:03:20,901 Relaxation took 48.0s
2026-03-04 03:03:20,901 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.2 pTM=0.634 ipTM=0.44 actifpTM=0.701
2026-03-04 03:04:45,298 Relaxation took 84.4s
2026-03-04 03:04:45,298 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.8 pTM=0.599 ipTM=0.319 actifpTM=0.515
2026-03-04 03:05:37,045 Relaxation took 51.7s
2026-03-04 03:05:37,045 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82.7 pTM=0.591 ipTM=0.231 actifpTM=0.307
2026-03-04 03:06:24,774 Relaxation took 47.7s
2026-03-04 03:06:24,775 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.8 pTM=0.575 ipTM=0.163 actifpTM=0.214
2026-03-04 03:06:29,269 Done
