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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.253 C 0.247 G 0.247 T 0.253 

MOTIF 1-CASCAG STREME-1
letter-probability matrix: alength= 4 w= 6 nsites= 269 E= 7.1e-005
 0.000327 0.949625 0.049721 0.000327
 0.933427 0.000318 0.000318 0.065937
 0.039074 0.363730 0.583819 0.013377
 0.055208 0.660514 0.000318 0.283960
 0.982797 0.000318 0.000318 0.016567
 0.082344 0.116575 0.708272 0.092809

MOTIF 2-RATGACTCAT STREME-2
letter-probability matrix: alength= 4 w= 10 nsites= 41 E= 7.2e-001
 0.484793 0.171709 0.257135 0.086363
 0.740967 0.086335 0.143217 0.029481
 0.001040 0.001012 0.029453 0.968495
 0.001040 0.001012 0.883144 0.114804
 0.854731 0.001012 0.143217 0.001040
 0.057922 0.769329 0.029504 0.143245
 0.001040 0.001012 0.001012 0.996937
 0.143245 0.854703 0.001012 0.001040
 0.911613 0.001012 0.057894 0.029481
 0.057922 0.171709 0.228592 0.541777

MOTIF 3-CASAGWKK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e+000
 0.017322 0.924384 0.050758 0.007537
 0.780806 0.134403 0.017306 0.067485
 0.007537 0.599813 0.375328 0.017322
 0.830940 0.067469 0.034047 0.067545
 0.034033 0.040942 0.900777 0.024248
 0.382286 0.017306 0.000595 0.599814
 0.017322 0.050743 0.465914 0.466021
 0.000611 0.050758 0.358632 0.589999

MOTIF 4-CWGGAA STREME-4
letter-probability matrix: alength= 4 w= 6 nsites= 63 E= 1.2e+000
 0.000955 0.997160 0.000930 0.000955
 0.459555 0.000930 0.039173 0.500342
 0.000955 0.000930 0.997160 0.000955
 0.000955 0.000930 0.997160 0.000955
 0.851084 0.147031 0.000930 0.000955
 0.837133 0.000930 0.000930 0.161007

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Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p cluster_3_coord_nodup.txt.fa
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CPU:		noble-meme.grid.gs.washington.edu
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FINALTIME:	3.24 seconds
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