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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.265 C 0.235 G 0.235 T 0.265 

MOTIF 1-CAGGAR STREME-1
letter-probability matrix: alength= 4 w= 6 nsites= 401 E= 2.4e-002
 0.021632 0.966894 0.007088 0.004386
 0.923873 0.000791 0.000331 0.075006
 0.003266 0.000781 0.962149 0.033804
 0.113361 0.153073 0.699890 0.033676
 0.926962 0.002971 0.043581 0.026487
 0.409715 0.000670 0.579105 0.010511

MOTIF 2-MTGASTCAK STREME-2
letter-probability matrix: alength= 4 w= 9 nsites= 59 E= 2.4e-001
 0.499530 0.301394 0.198419 0.000657
 0.000657 0.000581 0.000581 0.998180
 0.000657 0.000581 0.877859 0.120903
 0.998180 0.000581 0.000581 0.000657
 0.086565 0.413435 0.413435 0.086565
 0.000657 0.000581 0.000581 0.998180
 0.120903 0.877859 0.000581 0.000657
 0.998180 0.000581 0.000581 0.000657
 0.000657 0.198419 0.301394 0.499530

MOTIF 3-CCACTAGRKG STREME-3
letter-probability matrix: alength= 4 w= 10 nsites= 65 E= 7.3e-001
 0.008087 0.876062 0.054184 0.061667
 0.000683 0.980175 0.000605 0.018537
 0.855222 0.125637 0.000605 0.018537
 0.054244 0.926615 0.000605 0.018537
 0.168807 0.018458 0.036312 0.776423
 0.748120 0.018458 0.143471 0.089951
 0.000683 0.000605 0.998029 0.000683
 0.551616 0.036312 0.393536 0.018537
 0.043794 0.054165 0.579860 0.322181
 0.018537 0.000605 0.908761 0.072097

MOTIF 4-BWGCCA STREME-4
letter-probability matrix: alength= 4 w= 6 nsites= 109 E= 9.9e-001
 0.041972 0.438468 0.265400 0.254160
 0.401565 0.000567 0.000567 0.597301
 0.000641 0.063775 0.934943 0.000641
 0.000641 0.998151 0.000567 0.000641
 0.000641 0.998151 0.000567 0.000641
 0.945551 0.000567 0.000567 0.053314

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Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p cluster_9_coord_nodup.txt.fa
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CPU:		noble-meme.grid.gs.washington.edu
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FINALTIME:	4.23 seconds
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