VISTAenhCoord	VistaTargetGene	CHiC_TargetGene	sameTarget	Description	ESConly	NEConly	Both	bait_ID	PIR_ID	ActiveESC	ActiveNEC
chr10:102244842-102246334	WNT8B-SEC31B	CWF19L1	FALSE	_hindbrain_(rhombencephalon)[6/6]__midbrain_(mesencephalon)[6/6]__forebrain[6/6]	FALSE	TRUE	FALSE	92999	93052	FALSE	FALSE
chr10:103527193-103528393	FBXW4-FGF8	FBXW4	TRUE	_tail[5/6]	FALSE	FALSE	TRUE	93339	93351	FALSE	FALSE
chr10:103527193-103528393	FBXW4-FGF8	POLL	FALSE	_tail[5/6]	FALSE	FALSE	TRUE	93309	93351	FALSE	FALSE
chr10:118854124-118855243	KIAA1598-VAX1	C10orf82	FALSE	_midbrain_(mesencephalon)[3/8]__forebrain[5/8]	FALSE	TRUE	FALSE	97909	98008	FALSE	FALSE
chr10:119309200-119310544	EMX2-RAB11FIP2	PRLHR	FALSE	_midbrain_(mesencephalon)[6/7]__forebrain[6/7]	FALSE	TRUE	FALSE	98439	98135	FALSE	FALSE
chr10:119310483-119311458	EMX2-RAB11FIP2	FAM204A	FALSE	_midbrain_(mesencephalon)[14/15]	TRUE	FALSE	FALSE	98365	98138	FALSE	FALSE
chr10:119313709-119314860	EMX2-RAB11FIP2	FAM204A	FALSE	NA	TRUE	FALSE	FALSE	98365	98138	FALSE	FALSE
chr10:119725799-119727161	EMX2-RAB11FIP2	EMX2	TRUE	_heart[3/7]	FALSE	TRUE	FALSE	98134	98236	FALSE	FALSE
chr10:124902927-124904638	HMX3-HMX2	HMX2	TRUE	NA	FALSE	FALSE	TRUE	99717	99715	FALSE	FALSE
chr10:124902927-124904638	HMX3-HMX2	IKZF5	FALSE	NA	FALSE	FALSE	TRUE	99675	99715	FALSE	FALSE
chr10:124902927-124904638	HMX3-HMX2	HMX3	TRUE	NA	FALSE	FALSE	TRUE	99713	99716	FALSE	FALSE
chr10:134442029-134446812	INPP5A(intragenic)	INPP5A	TRUE	_heart[4/5]	FALSE	TRUE	FALSE	102201	102219	FALSE	FALSE
chr10:37054745-37057224	PCAT5-ANKRD30A	FZD8	FALSE	_forebrain[5/5]	FALSE	FALSE	TRUE	74660	74982	FALSE	TRUE
chr10:50413448-50414305	C10orf128-C10orf71-AS1	ARHGAP22	FALSE	NA	TRUE	FALSE	FALSE	77631	77767	FALSE	FALSE
chr10:71335775-71338729	NEUROG3-C10orf35	C10orf35	TRUE	_tail[4/5]	FALSE	FALSE	TRUE	84195	84188	FALSE	FALSE
chr10:76177765-76179000	ADK(intragenic)	DUPD1	FALSE	_midbrain_(mesencephalon)[9/13]__forebrain[12/13]__nose[8/13]	TRUE	FALSE	FALSE	85588	85425	TRUE	TRUE
chr10:77683451-77684636	C10orf11(intragenic)	C10orf11	TRUE	NA	FALSE	TRUE	FALSE	85655	85819	FALSE	FALSE
chr10:77793903-77797889	C10orf11(intragenic)	AC010997.1	FALSE	_neural_tube[6/6]__heart[4/6]__other[4/6]	FALSE	FALSE	TRUE	85650	85855	FALSE	FALSE
chr10:77793903-77797889	C10orf11(intragenic)	C10orf11	TRUE	_neural_tube[6/6]__heart[4/6]__other[4/6]	FALSE	FALSE	TRUE	85655	85855	FALSE	FALSE
chr10:77793903-77797889	C10orf11(intragenic)	AC010997.1	FALSE	_neural_tube[6/6]__heart[4/6]__other[4/6]	FALSE	FALSE	TRUE	85650	85856	FALSE	FALSE
chr10:77793903-77797889	C10orf11(intragenic)	C10orf11	TRUE	_neural_tube[6/6]__heart[4/6]__other[4/6]	FALSE	FALSE	TRUE	85655	85856	FALSE	FALSE
chr10:97173123-97176290	SORBS1(intragenic)	SORBS1	TRUE	NA	TRUE	FALSE	FALSE	91708	91665	TRUE	FALSE
chr11:110000895-110003234	ZC3H12C(intragenic)	BTG4	FALSE	_neural_tube[7/7]__hindbrain_(rhombencephalon)[7/7]__forebrain[7/7]_midbrain_(mesencephalon)[7/7]_	FALSE	FALSE	TRUE	134921	134517	TRUE	TRUE
chr11:119759730-119763658	PVRL1-TRIM29	RP11-831A10.1	FALSE	_midbrain_(mesencephalon)[6/9]__heart[4/9]	TRUE	FALSE	FALSE	137250	137224	FALSE	FALSE
chr11:125927055-125930318	CDON(intragenic)	PUS3	FALSE	_hindbrain_(rhombencephalon)[10/11]__midbrain_(mesencephalon)[10/11]__other[7/11]_forebrain[10/11]_	TRUE	FALSE	FALSE	138982	139022	FALSE	TRUE
chr11:125927055-125930318	CDON(intragenic)	RP11-50B3.2	FALSE	_hindbrain_(rhombencephalon)[10/11]__midbrain_(mesencephalon)[10/11]__other[7/11]_forebrain[10/11]_	FALSE	TRUE	FALSE	139050	139022	FALSE	TRUE
chr11:125927055-125930318	CDON(intragenic)	RP11-680F20.4	FALSE	_hindbrain_(rhombencephalon)[10/11]__midbrain_(mesencephalon)[10/11]__other[7/11]_forebrain[10/11]_	FALSE	FALSE	TRUE	139002	139022	FALSE	TRUE
chr11:12865332-12868546	TEAD1(intragenic)	TEAD1	TRUE	_midbrain_(mesencephalon)[9/12]__dorsal_root_ganglion[9/12]__limb[8/12]__forebrain[9/12]__branchial_arch[7/12]	FALSE	TRUE	FALSE	105647	105704	FALSE	TRUE
chr11:16913136-16917745	PLEKHA7(intragenic)	PLEKHA7	TRUE	_other[4/7]	FALSE	TRUE	FALSE	107082	107046	FALSE	FALSE
chr11:17434517-17436675	ABCC8(intragenic)	ABCC8	TRUE	_pancreas[10/14]	FALSE	TRUE	FALSE	107204	107185	FALSE	FALSE
chr11:17434517-17436675	ABCC8(intragenic)	OTOG	FALSE	_pancreas[10/14]	TRUE	FALSE	FALSE	107223	107185	FALSE	FALSE
chr11:17434517-17436675	ABCC8(intragenic)	ABCC8	TRUE	_pancreas[10/14]	FALSE	FALSE	TRUE	107204	107186	FALSE	FALSE
chr11:2610931-2614716	KCNQ1(intragenic)	CDKN1C	FALSE	NA	FALSE	FALSE	TRUE	102844	102786	FALSE	FALSE
chr11:2610931-2614716	KCNQ1(intragenic)	SLC22A18	FALSE	NA	TRUE	FALSE	FALSE	102845	102786	FALSE	FALSE
chr11:31895594-31899062	DKFZp686K1684(intragenic)	IMMP1L	FALSE	_neural_tube[8/8]__midbrain_(mesencephalon)[3/8]__forebrain[4/8]	FALSE	FALSE	TRUE	111706	111861	FALSE	FALSE
chr11:31895594-31899062	DKFZp686K1684(intragenic)	PAX6	FALSE	_neural_tube[8/8]__midbrain_(mesencephalon)[3/8]__forebrain[4/8]	TRUE	FALSE	FALSE	111842	111861	FALSE	FALSE
chr11:31989173-31990022	DKFZp686K1684-RCN1	IMMP1L	FALSE	_forebrain[6/9]	FALSE	TRUE	FALSE	111706	111885	FALSE	FALSE
chr11:31989173-31990022	DKFZp686K1684-RCN1	PAX6	FALSE	_forebrain[6/9]	FALSE	FALSE	TRUE	111842	111885	FALSE	FALSE
chr11:31989173-31990022	DKFZp686K1684-RCN1	RCN1	TRUE	_forebrain[6/9]	FALSE	FALSE	TRUE	111840	111885	FALSE	FALSE
chr11:35808002-35810908	TRIM44(intragenic)	COMMD9	FALSE	NA	FALSE	TRUE	FALSE	113139	113020	FALSE	FALSE
chr11:61311775-61314751	SYT7(intragenic)	DAGLA	FALSE	NA	FALSE	TRUE	FALSE	120606	120580	FALSE	FALSE
chr11:61311775-61314751	SYT7(intragenic)	SYT7	TRUE	NA	FALSE	FALSE	TRUE	120585	120580	FALSE	FALSE
chr11:65254704-65258394	MIR612-MALAT1	TIGD3	FALSE	_forebrain[8/13]__eye[9/13]__heart[8/13]	FALSE	FALSE	TRUE	121368	121385	FALSE	FALSE
chr11:65254704-65258394	MIR612-MALAT1	TIGD3	FALSE	_forebrain[8/13]__eye[9/13]__heart[8/13]	TRUE	FALSE	FALSE	121368	121386	TRUE	TRUE
chr11:69054197-69056378	LOC338694-MYEOV	ORAOV1	FALSE	_other[6/5]	TRUE	FALSE	FALSE	122217	122131	FALSE	FALSE
chr11:72080520-72081501	CLPB(intragenic)	PHOX2A	FALSE	NA	FALSE	FALSE	TRUE	122727	122762	FALSE	FALSE
chr11:8226046-8230683	RIC3-LMO1	RPL27A	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[5/8]__forebrain[8/8]__midbrain_(mesencephalon)[8/8]__heart[7/8]__blood_vessels[5/8]__liver[4/8]	FALSE	TRUE	FALSE	104483	104345	TRUE	FALSE
chr11:8226046-8230683	RIC3-LMO1	STK33	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[5/8]__forebrain[8/8]__midbrain_(mesencephalon)[8/8]__heart[7/8]__blood_vessels[5/8]__liver[4/8]	TRUE	FALSE	FALSE	104457	104346	FALSE	FALSE
chr11:8226046-8230683	RIC3-LMO1	TRIM66	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[5/8]__forebrain[8/8]__midbrain_(mesencephalon)[8/8]__heart[7/8]__blood_vessels[5/8]__liver[4/8]	TRUE	FALSE	FALSE	104480	104346	FALSE	FALSE
chr12:103371349-103372610	ASCL1-C12orf42	C12orf42	TRUE	_neural_tube[4/6]__hindbrain_(rhombencephalon)[6/6]__midbrain_(mesencephalon)[6/6]	FALSE	TRUE	FALSE	173394	173239	FALSE	FALSE
chr12:103405110-103408796	ASCL1-C12orf42	C12orf42	TRUE	_midbrain_(mesencephalon)[4/4]__forebrain[4/4]	FALSE	TRUE	FALSE	173394	173250	FALSE	TRUE
chr12:103405885-103408290	ASCL1-C12orf42	C12orf42	TRUE	_hindbrain_(rhombencephalon)[15/16]__midbrain_(mesencephalon)[15/16]__nose[11/16]_forebrain[15/16]_	FALSE	TRUE	FALSE	173394	173250	FALSE	TRUE
chr12:103406124-103408154	ASCL1-C12orf42	C12orf42	TRUE	_hindbrain_(rhombencephalon)[7/8]__midbrain_(mesencephalon)[8/8]__nose[4/8]_forebrain[7/8]_	FALSE	TRUE	FALSE	173394	173250	FALSE	TRUE
chr12:103570982-103573398	ASCL1-C12orf42	C12orf42	TRUE	_midbrain_(mesencephalon)[4/7]	FALSE	TRUE	FALSE	173394	173292	FALSE	FALSE
chr12:114885212-114886394	TBX5-AS1-TBX3	RBM19	FALSE	NA	TRUE	FALSE	FALSE	176016	176187	FALSE	FALSE
chr12:114885212-114886394	TBX5-AS1-TBX3	TBX3	TRUE	NA	TRUE	FALSE	FALSE	176240	176187	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	GPR84	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157630	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	HOXC10	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157539	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	HOXC11	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157537	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	HOXC12	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157534	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	HOXC8	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157543	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	HOXC9	FALSE	_heart[4/6]	FALSE	FALSE	TRUE	157542	157547	FALSE	FALSE
chr12:54412238-54415445	HOXC5(intragenic)	SMUG1	FALSE	_heart[4/6]	TRUE	FALSE	FALSE	157584	157547	FALSE	FALSE
chr12:59460190-59462367	LRIG3-SLC16A7	RP11-362K2.2	FALSE	_somite[5/9]__limb[5/9]__branchial_arch[5/9]	FALSE	FALSE	TRUE	158732	158923	FALSE	TRUE
chr12:98883495-98887039	LOC643770(intragenic)	TMPO	FALSE	NA	FALSE	FALSE	TRUE	171817	171814	TRUE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	CDX2	FALSE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	TRUE	FALSE	FALSE	183457	183427	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	GSX1	TRUE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	TRUE	FALSE	FALSE	183424	183427	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	GTF3A	FALSE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	FALSE	TRUE	FALSE	183300	183427	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	PDX1	TRUE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	TRUE	FALSE	FALSE	183446	183427	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	CDX2	FALSE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	TRUE	FALSE	FALSE	183457	183428	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	GSX1	TRUE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	FALSE	FALSE	TRUE	183424	183428	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	GTF3A	FALSE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	FALSE	TRUE	FALSE	183300	183428	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	LNX2	FALSE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	FALSE	FALSE	TRUE	183376	183428	FALSE	FALSE
chr13:28395961-28397536	GSX1-PDX1-AS1	PDX1	TRUE	_hindbrain_(rhombencephalon)[3/7]__midbrain_(mesencephalon)[7/7]__forebrain[6/7]	FALSE	FALSE	TRUE	183446	183428	FALSE	FALSE
chr13:78406128-78407714	EDNRB-AS1(intragenic)	EDNRB	TRUE	_hindbrain_(rhombencephalon)[6/9]__forebrain[4/9]	FALSE	TRUE	FALSE	199406	199370	FALSE	TRUE
chr13:78406128-78407714	EDNRB-AS1(intragenic)	EDNRB	TRUE	_hindbrain_(rhombencephalon)[6/9]__forebrain[4/9]	FALSE	TRUE	FALSE	199406	199371	FALSE	TRUE
chr13:80232246-80234630	NDFIP2-LINC01080	SPRY2	FALSE	_limb[5/6]__branchial_arch[5/6]__other[5/6]	FALSE	TRUE	FALSE	200153	199948	FALSE	TRUE
chr14:100039652-100044326	CCDC85C(intragenic)	CCDC85C	TRUE	_heart[11/11]	FALSE	FALSE	TRUE	234427	234425	FALSE	FALSE
chr14:100039652-100044326	CCDC85C(intragenic)	HHIPL1	FALSE	_heart[11/11]	FALSE	TRUE	FALSE	234430	234425	FALSE	FALSE
chr14:23906587-23908214	MIR208B-NGDN	MYH6	FALSE	_branchial_arch[7/9]__heart[9/9]__other[8/9]	FALSE	TRUE	FALSE	211446	211454	FALSE	FALSE
chr14:23906587-23908214	MIR208B-NGDN	SLC22A17	FALSE	_branchial_arch[7/9]__heart[9/9]__other[8/9]	FALSE	TRUE	FALSE	211435	211454	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	C14orf119	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211383	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	EFS	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211437	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	IL25	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211440	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	MYH6	FALSE	_heart[11/14]	FALSE	FALSE	TRUE	211446	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	PSME2	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211659	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	SLC22A17	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211435	211455	FALSE	FALSE
chr14:23911613-23912923	MIR208B-NGDN	ZFHX2	FALSE	_heart[11/14]	FALSE	TRUE	FALSE	211482	211455	FALSE	FALSE
chr14:29226075-29227673	LINC00645-FOXG1	C14orf23	FALSE	_hindbrain_(rhombencephalon)[3/5]__forebrain[3/5]	FALSE	FALSE	TRUE	213146	213143	FALSE	FALSE
chr14:29226075-29227673	LINC00645-FOXG1	C14orf23	FALSE	_hindbrain_(rhombencephalon)[3/5]__forebrain[3/5]	FALSE	FALSE	TRUE	213146	213144	FALSE	FALSE
chr14:29857930-29860548	C14orf23-MIR548AI	C14orf23	TRUE	_midbrain_(mesencephalon)[11/13]__forebrain[12/13]	FALSE	TRUE	FALSE	213146	213360	FALSE	TRUE
chr14:29997171-29998891	MIR548AI(intragenic)	C14orf23	FALSE	NA	FALSE	FALSE	TRUE	213146	213400	FALSE	FALSE
chr14:29997171-29998891	MIR548AI(intragenic)	C14orf23	FALSE	NA	FALSE	FALSE	TRUE	213146	213401	FALSE	FALSE
chr14:29997171-29998891	MIR548AI(intragenic)	PRKD1	FALSE	NA	TRUE	FALSE	FALSE	213603	213401	FALSE	FALSE
chr14:32940050-32944094	AKAP6(intragenic)	ARHGAP5	FALSE	NA	TRUE	FALSE	FALSE	214176	214306	FALSE	TRUE
chr14:36814302-36815937	MBIP-SFTA3	MBIP	TRUE	_hindbrain_(rhombencephalon)[8/9]	FALSE	TRUE	FALSE	215406	215414	FALSE	TRUE
chr14:36973775-36974585	SFTA3(intragenic)	FOXA1	FALSE	_forebrain[6/6]	TRUE	FALSE	FALSE	215784	215473	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	MBIP	FALSE	_forebrain[6/6]	FALSE	FALSE	TRUE	215406	215473	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	PAX9	FALSE	_forebrain[6/6]	TRUE	FALSE	FALSE	215522	215473	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	SFTA3	TRUE	_forebrain[6/6]	FALSE	TRUE	FALSE	215476	215473	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	PAX9	FALSE	_forebrain[6/6]	TRUE	FALSE	FALSE	215522	215474	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	SFTA3	TRUE	_forebrain[6/6]	FALSE	FALSE	TRUE	215476	215474	FALSE	FALSE
chr14:36973775-36974585	SFTA3(intragenic)	TTC6	FALSE	_forebrain[6/6]	FALSE	FALSE	TRUE	215783	215474	FALSE	FALSE
chr14:37726340-37727348	MIPOL1(intragenic)	FOXA1	FALSE	_midbrain_(mesencephalon)[3/3]	TRUE	FALSE	FALSE	215784	215689	FALSE	FALSE
chr14:37726340-37727348	MIPOL1(intragenic)	TTC6	FALSE	_midbrain_(mesencephalon)[3/3]	FALSE	TRUE	FALSE	215783	215689	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	C14orf39	FALSE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	TRUE	FALSE	FALSE	223077	223119	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	PRKCH	FALSE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	TRUE	FALSE	FALSE	223276	223119	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	SIX4	TRUE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	FALSE	FALSE	TRUE	223135	223119	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	SIX6	FALSE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	TRUE	FALSE	FALSE	223076	223119	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	SLC38A6	FALSE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	FALSE	FALSE	TRUE	223215	223119	FALSE	FALSE
chr14:61120199-61122451	SIX1-SIX4	SIX4	TRUE	_dorsal_root_ganglion[6/6]__branchial_arch[6/6]__facial_mesenchyme[6/6]	FALSE	TRUE	FALSE	223135	223120	FALSE	FALSE
chr14:75703373-75705053	TMED10-FOS	TMED10	TRUE	_somite[7/7]__heart[7/7]	FALSE	TRUE	FALSE	227315	227331	FALSE	FALSE
chr14:77384641-77387697	LRRC74-IRF2BPL	IRF2BPL	TRUE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[8/8]__dorsal_root_ganglion[7/8]__midbrain_(mesencephalon)[8/8]__forebrain[6/8]__limb[8/8]__branchial_arch[8/8]_	FALSE	FALSE	TRUE	227776	227755	FALSE	FALSE
chr14:77384641-77387697	LRRC74-IRF2BPL	KIAA1737	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[8/8]__dorsal_root_ganglion[7/8]__midbrain_(mesencephalon)[8/8]__forebrain[6/8]__limb[8/8]__branchial_arch[8/8]_	FALSE	FALSE	TRUE	227794	227755	FALSE	FALSE
chr14:77402795-77405507	LRRC74-IRF2BPL	IRF2BPL	TRUE	NA	FALSE	FALSE	TRUE	227776	227759	FALSE	FALSE
chr14:77402795-77405507	LRRC74-IRF2BPL	IRF2BPL	TRUE	NA	FALSE	FALSE	TRUE	227776	227760	FALSE	FALSE
chr14:77402795-77405507	LRRC74-IRF2BPL	KIAA1737	FALSE	NA	FALSE	TRUE	FALSE	227794	227760	FALSE	FALSE
chr14:77506871-77511353	IRF2BPL-LOC102724190	IRF2BPL	TRUE	_somite[7/16]__melanocytes[12/16]	FALSE	FALSE	TRUE	227776	227779	FALSE	FALSE
chr14:77506871-77511353	IRF2BPL-LOC102724190	IRF2BPL	TRUE	_somite[7/16]__melanocytes[12/16]	FALSE	FALSE	TRUE	227776	227780	FALSE	FALSE
chr14:77506871-77511353	IRF2BPL-LOC102724190	IRF2BPL	TRUE	_somite[7/16]__melanocytes[12/16]	FALSE	FALSE	TRUE	227776	227781	FALSE	FALSE
chr14:95898225-95898738	SYNE3(intragenic)	GSC	FALSE	NA	FALSE	TRUE	FALSE	233040	233214	FALSE	FALSE
chr14:95898225-95898738	SYNE3(intragenic)	RP11-1070N10.3	FALSE	NA	FALSE	TRUE	FALSE	233227	233214	FALSE	FALSE
chr14:95898225-95898738	SYNE3(intragenic)	SERPINA3	FALSE	NA	FALSE	TRUE	FALSE	232999	233214	FALSE	FALSE
chr15:31595790-31600208	LOC283710-KLF13	FAN1	FALSE	_neural_tube[10/11]__hindbrain_(rhombencephalon)[10/11]__forebrain[10/11]_midbrain_(mesencephalon)[10/11]_	FALSE	TRUE	FALSE	238580	238656	FALSE	FALSE
chr15:31595790-31600208	LOC283710-KLF13	KLF13	TRUE	_neural_tube[10/11]__hindbrain_(rhombencephalon)[10/11]__forebrain[10/11]_midbrain_(mesencephalon)[10/11]_	FALSE	TRUE	FALSE	238663	238656	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	BMF	TRUE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241430	241425	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	C15orf52	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	TRUE	FALSE	241483	241425	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	C15orf56	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241471	241425	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	PLCB2	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241479	241425	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	SRP14	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241416	241425	FALSE	FALSE
chr15:40383560-40386138	BMF(intragenic)	BMF	TRUE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241430	241426	TRUE	FALSE
chr15:40383560-40386138	BMF(intragenic)	C15orf52	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241483	241426	TRUE	FALSE
chr15:40383560-40386138	BMF(intragenic)	PLCB2	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241479	241426	TRUE	FALSE
chr15:40383560-40386138	BMF(intragenic)	SRP14	FALSE	_hindbrain_(rhombencephalon)[6/8]__somite[6/8]__forebrain[6/8]_midbrain_(mesencephalon)[6/8]_	FALSE	FALSE	TRUE	241416	241426	TRUE	FALSE
chr15:44171247-44173891	PIN4P1-CASC4	CASC4	TRUE	_heart[6/14]	FALSE	FALSE	TRUE	242421	242304	TRUE	TRUE
chr15:44172359-44173730	PIN4P1-CASC4	CASC4	TRUE	NA	FALSE	FALSE	TRUE	242421	242304	TRUE	TRUE
chr15:48012796-48016252	SEMA6D(intragenic)	SLC24A5	FALSE	NA	FALSE	TRUE	FALSE	243591	243478	FALSE	FALSE
chr15:94524574-94527142	RGMA-MCTP2	RGMA	TRUE	_neural_tube[12/12]__hindbrain_(rhombencephalon)[7/12]__forebrain[5/12]_midbrain_(mesencephalon)[8/12]_	FALSE	TRUE	FALSE	256173	256432	FALSE	FALSE
chr15:94524574-94527142	RGMA-MCTP2	RP11-326A13.2	FALSE	_neural_tube[12/12]__hindbrain_(rhombencephalon)[7/12]__forebrain[5/12]_midbrain_(mesencephalon)[8/12]_	FALSE	TRUE	FALSE	256205	256432	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	IGSF6	FALSE	NA	TRUE	FALSE	FALSE	263798	264067	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	METTL9	FALSE	NA	TRUE	FALSE	FALSE	263783	264067	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	OTOA	FALSE	NA	FALSE	FALSE	TRUE	263807	264067	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	PDZD9	FALSE	NA	FALSE	TRUE	FALSE	263896	264067	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	TMEM159	FALSE	NA	FALSE	FALSE	TRUE	263658	264067	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	HS3ST2	FALSE	NA	FALSE	FALSE	TRUE	264111	264068	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	LYRM1	FALSE	NA	FALSE	TRUE	FALSE	263616	264068	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	METTL9	FALSE	NA	TRUE	FALSE	FALSE	263783	264068	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	OTOA	FALSE	NA	FALSE	FALSE	TRUE	263807	264068	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	TMEM159	FALSE	NA	FALSE	FALSE	TRUE	263658	264068	FALSE	FALSE
chr16:22684122-22685282	LOC653786-MIR548D2	ZP2	FALSE	NA	FALSE	TRUE	FALSE	263680	264068	FALSE	FALSE
chr16:49735099-49736449	ZNF423(intragenic)	ZNF423	TRUE	_hindbrain_(rhombencephalon)[3/6]__forebrain[3/6]	FALSE	TRUE	FALSE	268043	268016	TRUE	TRUE
chr16:50848355-50849656	CYLD-LOC101927334	BRD7	FALSE	NA	FALSE	FALSE	TRUE	268169	268280	TRUE	FALSE
chr16:51491799-51493025	SALL1-LOC101927364	SALL1	TRUE	_neural_tube[8/9]__hindbrain_(rhombencephalon)[6/9]__forebrain[7/9]	FALSE	TRUE	FALSE	268361	268463	FALSE	TRUE
chr16:51786180-51787369	SALL1-LOC101927364	SALL1	TRUE	NA	FALSE	TRUE	FALSE	268361	268551	FALSE	FALSE
chr16:52242610-52244077	LOC102467079-TOX3	CHD9	FALSE	NA	FALSE	TRUE	FALSE	268973	268692	FALSE	FALSE
chr16:52468529-52471762	LOC102467079-TOX3	TOX3	TRUE	"_neural_tube[11/14]__hindbrain_(rhombencephalon)[11/14]__dorsal_root_ganglion[9/14]__midbrain_(mesencephalon)[11/14]__forebrain[11/14]__limb[9/14]__trigeminal_V_(ganglion,_cranial)[8/14]_"	FALSE	TRUE	FALSE	268805	268766	FALSE	FALSE
chr16:53929213-53929824	FTO(intragenic)	IRX3	FALSE	NA	FALSE	TRUE	FALSE	269331	269217	FALSE	FALSE
chr16:53929213-53929824	FTO(intragenic)	IRX5	FALSE	NA	FALSE	FALSE	TRUE	269530	269217	FALSE	FALSE
chr16:53948201-53949846	FTO(intragenic)	IRX3	FALSE	_hindbrain_(rhombencephalon)[3/5]	FALSE	TRUE	FALSE	269331	269223	FALSE	FALSE
chr16:53986630-53988193	FTO(intragenic)	IRX3	FALSE	_eye[4/10]	FALSE	TRUE	FALSE	269331	269232	FALSE	FALSE
chr16:53994058-53995943	FTO(intragenic)	IRX3	FALSE	_branchial_arch[4/5]__nose[4/5]	FALSE	TRUE	FALSE	269331	269237	FALSE	FALSE
chr16:53994058-53995943	FTO(intragenic)	IRX5	FALSE	_branchial_arch[4/5]__nose[4/5]	FALSE	FALSE	TRUE	269530	269237	FALSE	FALSE
chr16:54323420-54324336	IRX3-CRNDE	IRX5	FALSE	_dorsal_root_ganglion[5/5]	FALSE	FALSE	TRUE	269530	269332	FALSE	FALSE
chr16:54323420-54324336	IRX3-CRNDE	IRX5	FALSE	_dorsal_root_ganglion[5/5]	FALSE	FALSE	TRUE	269530	269333	FALSE	FALSE
chr16:54611467-54612437	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269424	FALSE	FALSE
chr16:54611467-54612437	IRX3-CRNDE	IRX5	FALSE	NA	FALSE	TRUE	FALSE	269530	269424	FALSE	FALSE
chr16:54616212-54617037	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269424	FALSE	FALSE
chr16:54616212-54617037	IRX3-CRNDE	IRX5	FALSE	NA	FALSE	TRUE	FALSE	269530	269424	FALSE	FALSE
chr16:54618981-54620264	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269424	FALSE	FALSE
chr16:54618981-54620264	IRX3-CRNDE	IRX5	FALSE	NA	FALSE	TRUE	FALSE	269530	269424	FALSE	FALSE
chr16:54624504-54625510	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269425	FALSE	FALSE
chr16:54665329-54667258	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269436	FALSE	FALSE
chr16:54665329-54667258	IRX3-CRNDE	IRX5	FALSE	NA	FALSE	FALSE	TRUE	269530	269436	FALSE	FALSE
chr16:54665329-54667258	IRX3-CRNDE	IRX3	TRUE	NA	TRUE	FALSE	FALSE	269331	269437	FALSE	FALSE
chr16:54679467-54680359	IRX3-CRNDE	IRX3	TRUE	NA	FALSE	FALSE	TRUE	269331	269440	FALSE	FALSE
chr16:66937076-66939560	PDP2-CDH16	B3GNT9	FALSE	_heart[14/14]	FALSE	FALSE	TRUE	273071	273021	FALSE	FALSE
chr16:66937076-66939560	PDP2-CDH16	CBFB	FALSE	_heart[14/14]	FALSE	TRUE	FALSE	273034	273021	FALSE	FALSE
chr16:66937076-66939560	PDP2-CDH16	FAM96B	FALSE	_heart[14/14]	FALSE	TRUE	FALSE	273025	273021	FALSE	FALSE
chr16:66937076-66939560	PDP2-CDH16	TRADD	FALSE	_heart[14/14]	FALSE	FALSE	TRUE	273072	273021	FALSE	FALSE
chr16:86898712-86901874	FOXL1-LOC101928708	MTHFSD	FALSE	NA	TRUE	FALSE	FALSE	278067	278144	FALSE	FALSE
chr16:86898712-86901874	FOXL1-LOC101928708	MTHFSD	FALSE	NA	TRUE	FALSE	FALSE	278067	278145	FALSE	FALSE
chr17:17439186-17444187	PEMT(intragenic)	FLCN	FALSE	_other[5/6]	FALSE	TRUE	FALSE	282766	282830	TRUE	FALSE
chr17:2079772-2081236	SMG6-LOC101927839	OVCA2	FALSE	_limb[10/10]	FALSE	FALSE	TRUE	279069	279099	TRUE	FALSE
chr17:2081998-2084289	SMG6-LOC101927839	OVCA2	FALSE	_other[5/13]	FALSE	FALSE	TRUE	279069	279100	TRUE	FALSE
chr17:27994702-27996874	SSH2(intragenic)	EFCAB5	FALSE	_heart[8/10]	TRUE	FALSE	FALSE	284686	284610	FALSE	FALSE
chr17:32077519-32078677	AA06-LOC101927239	ACCN1	FALSE	_neural_tube[16/20]__hindbrain_(rhombencephalon)[16/20]__forebrain[18/20]_midbrain_(mesencephalon)[18/20]_	TRUE	FALSE	FALSE	285779	285656	FALSE	FALSE
chr17:32077519-32078677	AA06-LOC101927239	ACCN1	FALSE	_neural_tube[16/20]__hindbrain_(rhombencephalon)[16/20]__forebrain[18/20]_midbrain_(mesencephalon)[18/20]_	FALSE	FALSE	TRUE	285779	285658	FALSE	FALSE
chr17:35057889-35058730	MRM1-LHX1	LHX1	TRUE	NA	FALSE	FALSE	TRUE	286516	286470	FALSE	FALSE
chr17:35336093-35337226	AATF(intragenic)	LHX1	FALSE	NA	FALSE	TRUE	FALSE	286516	286526	FALSE	FALSE
chr17:35447270-35448478	ACACA(intragenic)	LHX1	FALSE	NA	TRUE	FALSE	FALSE	286516	286550	TRUE	FALSE
chr17:37566364-37566971	MED1(intragenic)	CACNB1	FALSE	NA	TRUE	FALSE	FALSE	286947	286986	FALSE	FALSE
chr17:37566364-37566971	MED1(intragenic)	CDK12	FALSE	NA	TRUE	FALSE	FALSE	286999	286986	FALSE	FALSE
chr17:37831124-37834530	PGAP3(intragenic)	NEUROD2	FALSE	_heart[6/7]	TRUE	FALSE	FALSE	287019	287026	FALSE	FALSE
chr17:37831124-37834530	PGAP3(intragenic)	TCAP	FALSE	_heart[6/7]	TRUE	FALSE	FALSE	287024	287026	FALSE	FALSE
chr17:37831124-37834530	PGAP3(intragenic)	ERBB2	FALSE	_heart[6/7]	TRUE	FALSE	FALSE	287034	287028	TRUE	FALSE
chr17:38224836-38229126	THRA(intragenic)	MED24	FALSE	NA	TRUE	FALSE	FALSE	287110	287116	FALSE	FALSE
chr17:38224836-38229126	THRA(intragenic)	THRA	TRUE	NA	TRUE	FALSE	FALSE	287113	287116	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	ARL4D	FALSE	NA	FALSE	FALSE	TRUE	287850	287883	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	C17orf105	FALSE	NA	FALSE	FALSE	TRUE	287929	287883	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	DUSP3	FALSE	NA	TRUE	FALSE	FALSE	287928	287883	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	ETV4	TRUE	NA	FALSE	FALSE	TRUE	287881	287883	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	MEOX1	TRUE	NA	FALSE	FALSE	TRUE	287899	287883	FALSE	FALSE
chr17:41640235-41640900	ETV4-MEOX1	SOST	FALSE	NA	FALSE	FALSE	TRUE	287923	287883	FALSE	FALSE
chr17:41668736-41669927	ETV4-MEOX1	MEOX1	TRUE	NA	FALSE	FALSE	TRUE	287899	287889	TRUE	FALSE
chr17:41668736-41669927	ETV4-MEOX1	SOST	FALSE	NA	TRUE	FALSE	FALSE	287923	287889	TRUE	FALSE
chr17:41705022-41706087	ETV4-MEOX1	DUSP3	FALSE	NA	TRUE	FALSE	FALSE	287928	287895	TRUE	FALSE
chr17:41705022-41706087	ETV4-MEOX1	MEOX1	TRUE	NA	FALSE	FALSE	TRUE	287899	287895	TRUE	FALSE
chr17:41705022-41706087	ETV4-MEOX1	SOST	FALSE	NA	FALSE	FALSE	TRUE	287923	287895	TRUE	FALSE
chr17:42624802-42626014	GPATCH8-FZD2	C17orf104	FALSE	NA	FALSE	FALSE	TRUE	288097	288073	FALSE	FALSE
chr17:42624802-42626014	GPATCH8-FZD2	CCDC43	FALSE	NA	FALSE	FALSE	TRUE	288109	288073	FALSE	FALSE
chr17:42624802-42626014	GPATCH8-FZD2	FZD2	TRUE	NA	TRUE	FALSE	FALSE	288076	288073	FALSE	FALSE
chr17:46226552-46227693	SKAP1(intragenic)	HOXB1	FALSE	_eye[3/9]	FALSE	TRUE	FALSE	288990	288881	FALSE	FALSE
chr17:46226552-46227693	SKAP1(intragenic)	HOXB6	FALSE	_eye[3/9]	TRUE	FALSE	FALSE	289011	288881	FALSE	FALSE
chr17:46226552-46227693	SKAP1(intragenic)	HOXB9	FALSE	_eye[3/9]	FALSE	FALSE	TRUE	289019	288881	FALSE	FALSE
chr17:46226552-46227693	SKAP1(intragenic)	SKAP1	TRUE	_eye[3/9]	TRUE	FALSE	FALSE	288969	288881	FALSE	FALSE
chr17:47837234-47839185	FAM117A(intragenic)	SLC35B1	FALSE	NA	FALSE	FALSE	TRUE	289257	289266	TRUE	TRUE
chr17:57934217-57936802	MIR21-TUBD1	VMP1	FALSE	NA	TRUE	FALSE	FALSE	292106	292141	TRUE	FALSE
chr17:57934217-57936802	MIR21-TUBD1	VMP1	FALSE	NA	TRUE	FALSE	FALSE	292106	292142	FALSE	FALSE
chr17:57934217-57936802	MIR21-TUBD1	VMP1	FALSE	NA	TRUE	FALSE	FALSE	292106	292143	FALSE	FALSE
chr17:71287045-71288497	CDC42EP4(intragenic)	CDC42EP4	TRUE	NA	TRUE	FALSE	FALSE	295795	295793	TRUE	FALSE
chr18:36024488-36025531	MIR4318-LINC00669	CELF4	FALSE	NA	FALSE	TRUE	FALSE	307381	307638	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	FARSA	FALSE	_ear[3/7]	FALSE	TRUE	FALSE	322334	322345	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	LYL1	FALSE	_ear[3/7]	FALSE	FALSE	TRUE	322352	322345	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	FARSA	FALSE	_ear[3/7]	FALSE	TRUE	FALSE	322334	322346	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	LYL1	FALSE	_ear[3/7]	FALSE	FALSE	TRUE	322352	322346	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	MAST1	FALSE	_ear[3/7]	FALSE	TRUE	FALSE	322326	322346	FALSE	FALSE
chr19:13163511-13167355	NFIX(intragenic)	STX10	FALSE	_ear[3/7]	FALSE	TRUE	FALSE	322353	322346	FALSE	FALSE
chr19:30379565-30380645	CCNE1-URI1	POP4	FALSE	NA	FALSE	TRUE	FALSE	326258	326300	FALSE	FALSE
chr19:41936986-41938891	B3GNT8-ERICH4	EXOSC5	FALSE	_heart[7/10]	FALSE	FALSE	TRUE	328723	328733	FALSE	FALSE
chr19:41936986-41938891	B3GNT8-ERICH4	LYPD4	FALSE	_heart[7/10]	FALSE	FALSE	TRUE	328846	328733	FALSE	FALSE
chr1:10593123-10594209	PEX14(intragenic)	C1orf127	FALSE	NA	FALSE	FALSE	TRUE	2181	2107	FALSE	FALSE
chr1:10593123-10594209	PEX14(intragenic)	C1orf127	FALSE	NA	FALSE	FALSE	TRUE	2181	2108	TRUE	FALSE
chr1:109795696-109798850	CELSR2(intragenic)	CYB561D1	FALSE	"_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[9/10]__cranial_nerve[7/10]_trigeminal_V_(ganglion,_cranial)[9/10]_"	TRUE	FALSE	FALSE	30202	30145	FALSE	FALSE
chr1:109795696-109798850	CELSR2(intragenic)	KIAA1324	FALSE	"_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[9/10]__cranial_nerve[7/10]_trigeminal_V_(ganglion,_cranial)[9/10]_"	FALSE	FALSE	TRUE	30106	30145	FALSE	FALSE
chr1:109795696-109798850	CELSR2(intragenic)	SARS	FALSE	"_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[9/10]__cranial_nerve[7/10]_trigeminal_V_(ganglion,_cranial)[9/10]_"	FALSE	TRUE	FALSE	30132	30145	FALSE	FALSE
chr1:109795696-109798850	CELSR2(intragenic)	SORT1	FALSE	"_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[9/10]__cranial_nerve[7/10]_trigeminal_V_(ganglion,_cranial)[9/10]_"	FALSE	FALSE	TRUE	30176	30145	FALSE	FALSE
chr1:109795696-109798850	CELSR2(intragenic)	TMEM167B	FALSE	"_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[9/10]__cranial_nerve[7/10]_trigeminal_V_(ganglion,_cranial)[9/10]_"	FALSE	TRUE	FALSE	30098	30145	FALSE	FALSE
chr1:109816874-109818905	CELSR2-PSRC1	CYB561D1	FALSE	_other[4/11]	FALSE	FALSE	TRUE	30202	30147	TRUE	TRUE
chr1:109816874-109818905	CELSR2-PSRC1	KIAA1324	FALSE	_other[4/11]	FALSE	FALSE	TRUE	30106	30147	TRUE	TRUE
chr1:109816874-109818905	CELSR2-PSRC1	MYBPHL	FALSE	_other[4/11]	TRUE	FALSE	FALSE	30151	30147	TRUE	TRUE
chr1:109816874-109818905	CELSR2-PSRC1	PSMA5	FALSE	_other[4/11]	TRUE	FALSE	FALSE	30182	30147	TRUE	TRUE
chr1:109816874-109818905	CELSR2-PSRC1	SARS	FALSE	_other[4/11]	TRUE	FALSE	FALSE	30132	30147	TRUE	TRUE
chr1:109816874-109818905	CELSR2-PSRC1	SORT1	FALSE	_other[4/11]	FALSE	FALSE	TRUE	30176	30147	TRUE	TRUE
chr1:11940877-11944112	NPPB-KIAA2013	NPPB	TRUE	NA	FALSE	FALSE	TRUE	2354	2361	TRUE	FALSE
chr1:163441941-163442842	LOC100422212-PBX1	PBX1	TRUE	_hindbrain_(rhombencephalon)[5/7]__midbrain_(mesencephalon)[5/7]	TRUE	FALSE	FALSE	39135	38785	FALSE	FALSE
chr1:169910396-169913079	KIFAP3(intragenic)	PRRX1	FALSE	_limb[10/11]__genital_tubercle[9/11]	FALSE	FALSE	TRUE	41061	40838	TRUE	FALSE
chr1:181121049-181123654	IER5-GM140	ACBD6	FALSE	_heart[6/6]	FALSE	FALSE	TRUE	44154	44307	FALSE	FALSE
chr1:181121049-181123654	IER5-GM140	AL162431.1	FALSE	_heart[6/6]	TRUE	FALSE	FALSE	44266	44307	FALSE	FALSE
chr1:181121049-181123654	IER5-GM140	MR1	FALSE	_heart[6/6]	FALSE	FALSE	TRUE	44281	44307	FALSE	FALSE
chr1:203660971-203662806	ATP2B4(intragenic)	FMOD	FALSE	NA	FALSE	FALSE	TRUE	51142	51221	TRUE	FALSE
chr1:203660971-203662806	ATP2B4(intragenic)	OPTC	FALSE	NA	FALSE	FALSE	TRUE	51179	51221	TRUE	FALSE
chr1:204423958-204424935	PIK3C2B(intragenic)	PIK3C2B	TRUE	_neural_tube[6/10]__hindbrain_(rhombencephalon)[6/10]__forebrain[6/10]_midbrain_(mesencephalon)[6/10]_	FALSE	TRUE	FALSE	51411	51398	TRUE	FALSE
chr1:210433698-210437258	SERTAD4-HHAT	SERTAD4	TRUE	NA	FALSE	TRUE	FALSE	53050	53061	FALSE	FALSE
chr1:213498112-213501134	RPS6KC1-LINC00538	PROX1	FALSE	_forebrain[6/6]	FALSE	FALSE	TRUE	54099	53895	TRUE	FALSE
chr1:215888921-215890374	USH2A(intragenic)	GPATCH2	FALSE	NA	FALSE	TRUE	FALSE	55348	54717	FALSE	FALSE
chr1:225954390-225955885	ENAH-SRP9	ENAH	TRUE	_branchial_arch[4/5]	FALSE	FALSE	TRUE	57764	57792	TRUE	FALSE
chr1:227014699-227016924	ITPKB-IT1-PSEN2	C1orf95	FALSE	NA	FALSE	TRUE	FALSE	57987	58046	FALSE	FALSE
chr1:244217325-244218426	ZBTB18(intragenic)	PLD5	FALSE	NA	FALSE	TRUE	FALSE	62562	63039	FALSE	TRUE
chr1:27049620-27050905	ARID1A(intragenic)	PIGV	FALSE	_heart[4/9]	FALSE	FALSE	TRUE	5840	5821	FALSE	FALSE
chr1:27049620-27050905	ARID1A(intragenic)	RPS6KA1	FALSE	_heart[4/9]	FALSE	FALSE	TRUE	5779	5821	FALSE	FALSE
chr1:3190581-3191428	MIR4251-ARHGEF16	ACTRT2	FALSE	_hindbrain_(rhombencephalon)[5/6]	TRUE	FALSE	FALSE	487	518	TRUE	FALSE
chr1:3190581-3191428	MIR4251-ARHGEF16	PRDM16	FALSE	_hindbrain_(rhombencephalon)[5/6]	FALSE	FALSE	TRUE	495	518	TRUE	FALSE
chr1:3262093-3266365	MIR4251-ARHGEF16	ACTRT2	FALSE	_heart[4/4]	FALSE	TRUE	FALSE	487	529	FALSE	FALSE
chr1:3262093-3266365	MIR4251-ARHGEF16	PRDM16	FALSE	_heart[4/4]	FALSE	TRUE	FALSE	495	529	FALSE	FALSE
chr1:39291500-39292441	LOC339442-RRAGC	FHL3	FALSE	NA	FALSE	FALSE	TRUE	8382	8601	FALSE	FALSE
chr1:39291500-39292441	LOC339442-RRAGC	POU3F1	FALSE	NA	FALSE	FALSE	TRUE	8392	8601	FALSE	FALSE
chr1:39291500-39292441	LOC339442-RRAGC	SF3A3	FALSE	NA	FALSE	TRUE	FALSE	8380	8601	FALSE	FALSE
chr1:44989824-44991149	RNF220(intragenic)	RNF220	TRUE	_limb[4/4]	FALSE	FALSE	TRUE	10026	10050	FALSE	FALSE
chr1:54925046-54928826	SSBP3-AS1-ACOT11	SSBP3	TRUE	_limb[8/9]	TRUE	FALSE	FALSE	12631	12646	FALSE	FALSE
chr1:59522325-59524092	LOC101926925(intragenic)	JUN	FALSE	_limb[3/5]	TRUE	FALSE	FALSE	14015	14083	TRUE	FALSE
chr1:60102624-60105491	FGGY(intragenic)	FGGY	TRUE	NA	FALSE	TRUE	FALSE	14164	14270	FALSE	TRUE
chr1:60102624-60105491	FGGY(intragenic)	FGGY	TRUE	NA	FALSE	FALSE	TRUE	14164	14272	FALSE	FALSE
chr1:63443534-63444884	ATG4C-LINC00466	ALG6	FALSE	_dorsal_root_ganglion[3/4]	FALSE	TRUE	FALSE	15385	15269	FALSE	FALSE
chr1:63464282-63465717	ATG4C-LINC00466	ALG6	FALSE	_neural_tube[4/4]	TRUE	FALSE	FALSE	15385	15281	FALSE	FALSE
chr1:8130439-8131887	ERRFI1-SLC45A1	SLC45A1	TRUE	_neural_tube[7/8]__limb[6/8]__eye[4/8]__branchial_arch[6/8]__nose[6/8]__facial_mesenchyme[6/8]	FALSE	FALSE	TRUE	1602	1543	TRUE	TRUE
chr1:88535719-88538390	LOC100505768-LOC101927891	LMO4	FALSE	_other[4/6]	FALSE	FALSE	TRUE	23210	23457	FALSE	FALSE
chr20:17839843-17841338	BANF2-SNX5	BANF2	TRUE	NA	TRUE	FALSE	FALSE	408600	408639	FALSE	FALSE
chr20:17839843-17841338	BANF2-SNX5	RRBP1	FALSE	NA	FALSE	FALSE	TRUE	408599	408639	FALSE	FALSE
chr20:21488551-21490021	NKX2-4-NKX2-2	PAX1	FALSE	_hindbrain_(rhombencephalon)[6/8]__midbrain_(mesencephalon)[4/8]	TRUE	FALSE	FALSE	409707	409650	FALSE	FALSE
chr20:2719208-2719789	EBF4(intragenic)	EBF4	TRUE	_neural_tube[5/9]__hindbrain_(rhombencephalon)[5/9]__forebrain[5/9]_midbrain_(mesencephalon)[5/9]_	FALSE	FALSE	TRUE	404069	404080	FALSE	FALSE
chr20:2719208-2719789	EBF4(intragenic)	PTPRA	FALSE	_neural_tube[5/9]__hindbrain_(rhombencephalon)[5/9]__forebrain[5/9]_midbrain_(mesencephalon)[5/9]_	FALSE	FALSE	TRUE	404099	404080	FALSE	FALSE
chr20:2719208-2719789	EBF4(intragenic)	VPS16	FALSE	_neural_tube[5/9]__hindbrain_(rhombencephalon)[5/9]__forebrain[5/9]_midbrain_(mesencephalon)[5/9]_	FALSE	FALSE	TRUE	404098	404080	FALSE	FALSE
chr20:39574314-39576895	MAFB-TOP1	MAFB	TRUE	NA	FALSE	FALSE	TRUE	413279	413368	FALSE	FALSE
chr20:46012576-46013656	LOC100131496-NCOA3	ZMYND8	FALSE	NA	FALSE	FALSE	TRUE	415018	415023	TRUE	TRUE
chr20:56014710-56019293	RBM38-CTCFL	RBM38	TRUE	_heart[10/10]	FALSE	TRUE	FALSE	417632	417640	FALSE	FALSE
chr21:35817695-35821340	C21orf140-RCAN1	RCAN1	TRUE	NA	TRUE	FALSE	FALSE	426227	426180	FALSE	FALSE
chr21:35915964-35919662	RCAN1(intragenic)	KCNE1	FALSE	_other[4/5]	FALSE	TRUE	FALSE	426203	426213	FALSE	FALSE
chr21:40361359-40363126	LOC101928435-PSMG1	ETS2	FALSE	_hindbrain_(rhombencephalon)[4/5]__forebrain[4/5]__tail[4/5]_limb[4/5]_	FALSE	FALSE	TRUE	427447	427499	FALSE	FALSE
chr22:19749356-19750055	TBX1(intragenic)	COMT	FALSE	_limb[5/8]	TRUE	FALSE	FALSE	430110	430074	FALSE	FALSE
chr22:19749356-19750055	TBX1(intragenic)	TBX1	TRUE	_limb[5/8]	TRUE	FALSE	FALSE	430072	430074	FALSE	FALSE
chr22:20775061-20779007	ZNF74-KLHL22	RTN4R	FALSE	_hindbrain_(rhombencephalon)[6/10]__dorsal_root_ganglion[7/10]__branchial_arch[8/10]_limb[8/10]_	TRUE	FALSE	FALSE	430163	430225	FALSE	FALSE
chr22:32019365-32023822	MIR7109-PRR14L	PATZ1	FALSE	_neural_tube[15/16]__hindbrain_(rhombencephalon)[14/16]__heart[5/16]	TRUE	FALSE	FALSE	432648	432693	TRUE	FALSE
chr22:32019365-32023822	MIR7109-PRR14L	YWHAH	FALSE	_neural_tube[15/16]__hindbrain_(rhombencephalon)[14/16]__heart[5/16]	TRUE	FALSE	FALSE	432748	432693	TRUE	FALSE
chr22:35982681-35987358	RASD2-MB	RASD2	TRUE	NA	FALSE	FALSE	TRUE	433726	433731	FALSE	FALSE
chr22:36145691-36146713	RBFOX2(intragenic)	APOL3	FALSE	NA	TRUE	FALSE	FALSE	433903	433762	TRUE	TRUE
chr22:36145691-36146713	RBFOX2(intragenic)	MB	FALSE	NA	TRUE	FALSE	FALSE	433739	433762	TRUE	TRUE
chr22:38442140-38442879	MIR4534-PICK1	KCNJ4	FALSE	_hindbrain_(rhombencephalon)[4/5]__cranial_nerve[4/5]	FALSE	TRUE	FALSE	434335	434253	FALSE	FALSE
chr22:38442140-38442879	MIR4534-PICK1	MAFF	FALSE	_hindbrain_(rhombencephalon)[4/5]__cranial_nerve[4/5]	TRUE	FALSE	FALSE	434286	434253	FALSE	FALSE
chr22:38442140-38442879	MIR4534-PICK1	PLA2G6	FALSE	_hindbrain_(rhombencephalon)[4/5]__cranial_nerve[4/5]	TRUE	FALSE	FALSE	434285	434253	FALSE	FALSE
chr22:38442140-38442879	MIR4534-PICK1	SOX10	FALSE	_hindbrain_(rhombencephalon)[4/5]__cranial_nerve[4/5]	FALSE	TRUE	FALSE	434247	434253	FALSE	FALSE
chr22:38446392-38446997	MIR4534-PICK1	KCNJ4	FALSE	NA	FALSE	TRUE	FALSE	434335	434253	FALSE	FALSE
chr22:38446392-38446997	MIR4534-PICK1	MAFF	FALSE	NA	TRUE	FALSE	FALSE	434286	434253	FALSE	FALSE
chr22:38446392-38446997	MIR4534-PICK1	PLA2G6	FALSE	NA	TRUE	FALSE	FALSE	434285	434253	FALSE	FALSE
chr22:38446392-38446997	MIR4534-PICK1	SOX10	FALSE	NA	FALSE	TRUE	FALSE	434247	434253	FALSE	FALSE
chr2:121832418-121833317	GLI2-TFCP2L1	EPB41L5	FALSE	_hindbrain_(rhombencephalon)[7/7]__forebrain[6/7]__other[6/7]	FALSE	TRUE	FALSE	366041	366307	FALSE	FALSE
chr2:121832418-121833317	GLI2-TFCP2L1	GLI2	TRUE	_hindbrain_(rhombencephalon)[7/7]__forebrain[6/7]__other[6/7]	FALSE	FALSE	TRUE	366223	366307	FALSE	FALSE
chr2:157720628-157721586	GPD2-GALNT5	NR4A2	FALSE	_hindbrain_(rhombencephalon)[5/7]	FALSE	TRUE	FALSE	377375	377558	FALSE	FALSE
chr2:172936519-172938249	METAP1D(intragenic)	METAP1D	TRUE	_forebrain[7/8]__cranial_nerve[4/8]	FALSE	TRUE	FALSE	382404	382421	FALSE	FALSE
chr2:19578175-19579415	OSR1-LINC00954	TTC32	FALSE	NA	FALSE	TRUE	FALSE	337770	337615	FALSE	FALSE
chr2:20778294-20779806	RHOB-HS1BP3-IT1	RHOB	TRUE	_heart[10/10]__other[5/10]__ear[7/10]	FALSE	FALSE	TRUE	337931	337963	FALSE	FALSE
chr2:220271494-220272006	DNPEP-DES	ACCN4	FALSE	NA	FALSE	FALSE	TRUE	397305	397289	FALSE	FALSE
chr2:220271494-220272006	DNPEP-DES	GMPPA	FALSE	NA	FALSE	FALSE	TRUE	397302	397289	FALSE	FALSE
chr2:220271494-220272006	DNPEP-DES	TMEM198	FALSE	NA	TRUE	FALSE	FALSE	397309	397289	FALSE	FALSE
chr2:226758670-226760695	MIR548AR-LOC646736	IRS1	FALSE	NA	FALSE	FALSE	TRUE	399553	399270	FALSE	FALSE
chr2:58859997-58861674	LINC01122(intragenic)	VRK2	FALSE	_limb[4/5]	TRUE	FALSE	FALSE	349073	349311	FALSE	TRUE
chr2:71892481-71894470	DYSF(intragenic)	EXOC6B	FALSE	NA	FALSE	TRUE	FALSE	353494	353173	TRUE	FALSE
chr2:71892481-71894470	DYSF(intragenic)	SPR	FALSE	NA	TRUE	FALSE	FALSE	353509	353173	TRUE	FALSE
chr2:71898013-71900892	DYSF(intragenic)	EXOC6B	FALSE	_limb[6/6]__tail[5/6]	FALSE	TRUE	FALSE	353494	353173	TRUE	FALSE
chr2:71898013-71900892	DYSF(intragenic)	SPR	FALSE	_limb[6/6]__tail[5/6]	TRUE	FALSE	FALSE	353509	353173	TRUE	FALSE
chr2:73124730-73126091	SPR-EMX1	EMX1	TRUE	_forebrain[7/8]	FALSE	FALSE	TRUE	353513	353510	FALSE	FALSE
chr2:73124730-73126091	SPR-EMX1	SFXN5	FALSE	_forebrain[7/8]	FALSE	FALSE	TRUE	353546	353510	FALSE	FALSE
chr3:114936330-114938229	MIR4796-GAP43	GAP43	TRUE	_midbrain_(mesencephalon)[4/5]	FALSE	FALSE	TRUE	471187	471044	FALSE	FALSE
chr3:114936330-114938229	MIR4796-GAP43	GAP43	TRUE	_midbrain_(mesencephalon)[4/5]	FALSE	FALSE	TRUE	471187	471046	FALSE	FALSE
chr3:122690302-122695291	SEMA5B(intragenic)	SEMA5B	TRUE	NA	FALSE	FALSE	TRUE	473486	473476	FALSE	FALSE
chr3:141579463-141580810	GRK7-ATP1B3	RNF7	FALSE	_limb[3/7]	FALSE	FALSE	TRUE	478799	478828	FALSE	FALSE
chr3:147748015-147749579	ZIC1-AGTR1	ZIC1	TRUE	NA	TRUE	FALSE	FALSE	480661	480882	FALSE	FALSE
chr3:147753310-147755618	ZIC1-AGTR1	ZIC1	TRUE	NA	TRUE	FALSE	FALSE	480661	480882	FALSE	FALSE
chr3:147793207-147794247	ZIC1-AGTR1	ZIC1	TRUE	NA	FALSE	TRUE	FALSE	480661	480892	FALSE	TRUE
chr3:147793207-147794247	ZIC1-AGTR1	ZIC4	FALSE	NA	FALSE	TRUE	FALSE	480668	480892	FALSE	TRUE
chr3:147801015-147802169	ZIC1-AGTR1	ZIC1	TRUE	_midbrain_(mesencephalon)[12/15]__forebrain[12/15]	FALSE	TRUE	FALSE	480661	480895	FALSE	TRUE
chr3:147801015-147802169	ZIC1-AGTR1	ZIC4	FALSE	_midbrain_(mesencephalon)[12/15]__forebrain[12/15]	FALSE	TRUE	FALSE	480668	480895	FALSE	TRUE
chr3:147802357-147803586	ZIC1-AGTR1	ZIC1	TRUE	_neural_tube[5/7]__hindbrain_(rhombencephalon)[5/7]	FALSE	TRUE	FALSE	480661	480895	FALSE	TRUE
chr3:147802357-147803586	ZIC1-AGTR1	ZIC4	FALSE	_neural_tube[5/7]__hindbrain_(rhombencephalon)[5/7]	FALSE	TRUE	FALSE	480668	480895	FALSE	TRUE
chr3:148085265-148088422	ZIC1-AGTR1	ZIC1	TRUE	NA	FALSE	TRUE	FALSE	480661	480995	FALSE	FALSE
chr3:156845778-156849158	LINC00881-CCNL1	RP11-6F2.7	FALSE	NA	FALSE	FALSE	TRUE	483720	483824	FALSE	FALSE
chr3:156845778-156849158	LINC00881-CCNL1	SSR3	FALSE	NA	FALSE	TRUE	FALSE	483624	483824	FALSE	FALSE
chr3:156845778-156849158	LINC00881-CCNL1	TIPARP	FALSE	NA	FALSE	FALSE	TRUE	483659	483824	FALSE	FALSE
chr3:158009522-158010836	RSRC1(intragenic)	C3orf55	FALSE	NA	FALSE	TRUE	FALSE	483953	484203	FALSE	FALSE
chr3:181958774-181961127	LINC01206-FLJ46066	SOX2	FALSE	_neural_tube[6/6]__hindbrain_(rhombencephalon)[4/6]__forebrain[4/6]_midbrain_(mesencephalon)[4/6]_	FALSE	TRUE	FALSE	491687	491846	FALSE	TRUE
chr3:181958774-181961127	LINC01206-FLJ46066	SOX2	FALSE	_neural_tube[6/6]__hindbrain_(rhombencephalon)[4/6]__forebrain[4/6]_midbrain_(mesencephalon)[4/6]_	FALSE	FALSE	TRUE	491687	491847	FALSE	FALSE
chr3:181958774-181961127	LINC01206-FLJ46066	SOX2	FALSE	_neural_tube[6/6]__hindbrain_(rhombencephalon)[4/6]__forebrain[4/6]_midbrain_(mesencephalon)[4/6]_	FALSE	TRUE	FALSE	491687	491848	FALSE	FALSE
chr3:19027747-19029355	SATB1-KCNH8	TBC1D5	FALSE	NA	TRUE	FALSE	FALSE	442202	442409	FALSE	FALSE
chr3:193489359-193491333	OPA1-AS1-LOC647323	GP5	FALSE	_midbrain_(mesencephalon)[5/5]__forebrain[5/5]	FALSE	TRUE	FALSE	495509	495322	FALSE	FALSE
chr3:193489359-193491333	OPA1-AS1-LOC647323	HES1	FALSE	_midbrain_(mesencephalon)[5/5]__forebrain[5/5]	FALSE	TRUE	FALSE	495428	495322	FALSE	FALSE
chr3:193489359-193491333	OPA1-AS1-LOC647323	CPN2	FALSE	_midbrain_(mesencephalon)[5/5]__forebrain[5/5]	FALSE	TRUE	FALSE	495498	495323	FALSE	FALSE
chr3:193489359-193491333	OPA1-AS1-LOC647323	HES1	FALSE	_midbrain_(mesencephalon)[5/5]__forebrain[5/5]	FALSE	FALSE	TRUE	495428	495323	FALSE	FALSE
chr3:193677518-193680170	LOC647323(intragenic)	HES1	FALSE	_neural_tube[3/5]__forebrain[4/5]__limb[4/5]	FALSE	TRUE	FALSE	495428	495372	FALSE	FALSE
chr3:193929360-193931457	HES1-LINC00887	HES1	TRUE	_neural_tube[10/11]__hindbrain_(rhombencephalon)[11/11]__forebrain[10/11]_midbrain_(mesencephalon)[10/11]_	FALSE	TRUE	FALSE	495428	495452	FALSE	FALSE
chr3:195846372-195848341	TFRC-LINC00885	C3orf43	FALSE	NA	FALSE	TRUE	FALSE	496019	495912	FALSE	FALSE
chr3:195846372-195848341	TFRC-LINC00885	TFRC	TRUE	NA	TRUE	FALSE	FALSE	495908	495912	FALSE	FALSE
chr3:195846372-195848341	TFRC-LINC00885	C3orf43	FALSE	NA	TRUE	FALSE	FALSE	496019	495913	TRUE	FALSE
chr3:195846372-195848341	TFRC-LINC00885	TFRC	TRUE	NA	TRUE	FALSE	FALSE	495908	495913	TRUE	FALSE
chr3:37805999-37809080	ITGA9-AS1(intragenic)	ITGA9	TRUE	_neural_tube[11/14]	FALSE	TRUE	FALSE	448345	448433	FALSE	FALSE
chr3:37805999-37809080	ITGA9-AS1(intragenic)	ITGA9	TRUE	_neural_tube[11/14]	FALSE	FALSE	TRUE	448345	448435	FALSE	FALSE
chr3:37810701-37814504	ITGA9-AS1(intragenic)	ITGA9	TRUE	NA	FALSE	FALSE	TRUE	448345	448435	FALSE	FALSE
chr3:37810701-37814504	ITGA9-AS1(intragenic)	ITGA9	TRUE	NA	FALSE	TRUE	FALSE	448345	448437	FALSE	FALSE
chr3:50636478-50640158	HEMK1-CISH	RBM15B	FALSE	_heart[7/12]	TRUE	FALSE	FALSE	451972	451717	TRUE	FALSE
chr3:52461982-52465131	PHF7-SEMA3G	C3orf78	FALSE	_blood_vessels[5/7]	TRUE	FALSE	FALSE	452222	452205	FALSE	FALSE
chr3:52461982-52465131	PHF7-SEMA3G	GLYCTK	FALSE	_blood_vessels[5/7]	FALSE	FALSE	TRUE	452184	452205	FALSE	FALSE
chr3:52461982-52465131	PHF7-SEMA3G	TLR9	FALSE	_blood_vessels[5/7]	TRUE	FALSE	FALSE	452168	452205	FALSE	FALSE
chr3:55524543-55526260	WNT5A-ERC2	ERC2	TRUE	_tail[11/12]	FALSE	TRUE	FALSE	453376	453069	FALSE	FALSE
chr4:10107986-10110350	MIR3138-ZNF518B	WDR1	FALSE	NA	FALSE	FALSE	TRUE	498606	498604	TRUE	FALSE
chr4:129278773-129280245	PGRMC2-JADE1	PHF17	FALSE	NA	FALSE	FALSE	TRUE	535855	535722	FALSE	FALSE
chr4:12950899-12952450	HS3ST1-RAB28	RAB28	TRUE	NA	FALSE	TRUE	FALSE	499670	499504	FALSE	FALSE
chr4:140682864-140686286	MAML3(intragenic)	MAML3	TRUE	NA	FALSE	FALSE	TRUE	539485	539368	FALSE	FALSE
chr4:140682864-140686286	MAML3(intragenic)	SCOC	FALSE	NA	FALSE	FALSE	TRUE	539522	539368	FALSE	FALSE
chr4:151288357-151289369	LRBA(intragenic)	MAB21L2	FALSE	NA	FALSE	TRUE	FALSE	542891	542820	FALSE	TRUE
chr4:174436313-174436870	SCRG1-HAND2	CEP44	FALSE	NA	FALSE	FALSE	TRUE	550454	550179	FALSE	FALSE
chr4:174436313-174436870	SCRG1-HAND2	HPGD	FALSE	NA	TRUE	FALSE	FALSE	550544	550179	FALSE	FALSE
chr4:53823605-53826463	SCFD2(intragenic)	RASL11B	FALSE	NA	FALSE	TRUE	FALSE	511262	511295	FALSE	TRUE
chr4:53823605-53826463	SCFD2(intragenic)	USP46	FALSE	NA	FALSE	TRUE	FALSE	511199	511295	FALSE	TRUE
chr4:54061474-54065280	SCFD2(intragenic)	PDGFRA	FALSE	_branchial_arch[3/7]	FALSE	FALSE	TRUE	511697	511368	FALSE	FALSE
chr4:54061474-54065280	SCFD2(intragenic)	CHIC2	FALSE	_branchial_arch[3/7]	FALSE	TRUE	FALSE	511656	511369	FALSE	FALSE
chr4:54061474-54065280	SCFD2(intragenic)	PDGFRA	FALSE	_branchial_arch[3/7]	FALSE	FALSE	TRUE	511697	511369	FALSE	FALSE
chr4:84700011-84701265	AGPAT9-NKX6-1	CDS1	FALSE	_midbrain_(mesencephalon)[8/8]	FALSE	TRUE	FALSE	521431	521160	FALSE	FALSE
chr4:84700011-84701265	AGPAT9-NKX6-1	NKX6-1	TRUE	_midbrain_(mesencephalon)[8/8]	FALSE	FALSE	TRUE	521404	521160	FALSE	FALSE
chr5:101999073-102003903	LINC00491(intragenic)	PPIP5K2	FALSE	_neural_tube[7/9]__hindbrain_(rhombencephalon)[8/9]__forebrain[8/9]__midbrain_(mesencephalon)[8/9]__limb[6/9]__nose[7/9]__facial_mesenchyme[7/9]_	FALSE	TRUE	FALSE	587007	586841	FALSE	FALSE
chr5:124244194-124245446	ZNF608-LOC101927421	ZNF608	TRUE	NA	FALSE	TRUE	FALSE	593914	593966	FALSE	FALSE
chr5:124244194-124245446	ZNF608-LOC101927421	ZNF608	TRUE	NA	FALSE	TRUE	FALSE	593914	593967	FALSE	FALSE
chr5:124330649-124332930	ZNF608-LOC101927421	ZNF608	TRUE	_neural_tube[5/5]__midbrain_(mesencephalon)[5/5]	FALSE	TRUE	FALSE	593914	593995	FALSE	TRUE
chr5:133772017-133775320	LOC102546229-LOC101927934	CDKN2AIPNL	FALSE	NA	FALSE	FALSE	TRUE	596895	596899	TRUE	FALSE
chr5:133772017-133775320	LOC102546229-LOC101927934	PHF15	FALSE	NA	FALSE	FALSE	TRUE	596920	596899	TRUE	FALSE
chr5:133772017-133775320	LOC102546229-LOC101927934	CDKN2AIPNL	FALSE	NA	FALSE	FALSE	TRUE	596895	596900	FALSE	FALSE
chr5:133772017-133775320	LOC102546229-LOC101927934	PHF15	FALSE	NA	FALSE	FALSE	TRUE	596920	596900	FALSE	FALSE
chr5:134355508-134357399	CATSPER3-PITX1	NEUROG1	FALSE	NA	TRUE	FALSE	FALSE	597144	597029	FALSE	FALSE
chr5:134769599-134772144	H2AFY-C5orf20	TGFBI	FALSE	_limb[8/9]	FALSE	TRUE	FALSE	597293	597123	FALSE	FALSE
chr5:141930055-141932276	SPRY4-FGF1	PCDH12	FALSE	_tail[5/7]	FALSE	TRUE	FALSE	598913	599068	TRUE	FALSE
chr5:141930055-141932276	SPRY4-FGF1	SPRY4	TRUE	_tail[5/7]	FALSE	FALSE	TRUE	599006	599068	TRUE	FALSE
chr5:148821355-148824866	MIR145-CSNK1A1	CSNK1A1	TRUE	NA	FALSE	FALSE	TRUE	601295	601267	TRUE	FALSE
chr5:153871627-153871976	HAND1-MIR3141	HAND1	TRUE	NA	FALSE	FALSE	TRUE	602757	602760	FALSE	FALSE
chr5:157589029-157590477	CLINT1-LOC101927697	EBF1	FALSE	_limb[6/10]	TRUE	FALSE	FALSE	604162	603832	FALSE	FALSE
chr5:174160174-174161834	MSX2-MIR4634	MSX2	TRUE	_hindbrain_(rhombencephalon)[7/9]__forebrain[9/9]__nose[3/9]_limb[7/9]_	FALSE	FALSE	TRUE	608887	608889	FALSE	FALSE
chr5:92219848-92221133	ARRDC3-AS1-NR2F1-AS1	NR2F1	TRUE	_branchial_arch[3/10]__eye[7/10]	FALSE	TRUE	FALSE	583915	583668	FALSE	FALSE
chr5:92312840-92314645	ARRDC3-AS1-NR2F1-AS1	NR2F1	TRUE	_forebrain[8/9]	FALSE	TRUE	FALSE	583915	583700	FALSE	TRUE
chr5:92314781-92316083	ARRDC3-AS1-NR2F1-AS1	NR2F1	TRUE	_other[7/8]	FALSE	TRUE	FALSE	583915	583700	FALSE	TRUE
chr5:92314781-92316083	ARRDC3-AS1-NR2F1-AS1	NR2F1	TRUE	_other[7/8]	FALSE	TRUE	FALSE	583915	583701	FALSE	TRUE
chr6:100657912-100659391	MCHR2-AS1-SIM1	SIM1	TRUE	_midbrain_(mesencephalon)[9/9]__cranial_nerve[6/9]	FALSE	TRUE	FALSE	640078	639983	FALSE	FALSE
chr6:100904128-100905067	SIM1(intragenic)	SIM1	TRUE	_neural_tube[4/7]__midbrain_(mesencephalon)[4/7]__eye[3/7]_forebrain[4/7]_	FALSE	FALSE	TRUE	640078	640076	FALSE	FALSE
chr6:108435330-108436506	OSTM1-NR2E1	OSTM1	TRUE	NA	FALSE	FALSE	TRUE	642544	642532	FALSE	FALSE
chr6:108437243-108438452	OSTM1-NR2E1	OSTM1	TRUE	NA	FALSE	FALSE	TRUE	642544	642532	FALSE	FALSE
chr6:15508843-15511338	JARID2(intragenic)	RNF182	FALSE	NA	FALSE	TRUE	FALSE	614566	615030	TRUE	FALSE
chr6:163276830-163279930	PACRG(intragenic)	QKI	FALSE	_forebrain[9/9]	FALSE	TRUE	FALSE	659809	659618	FALSE	TRUE
chr6:163276830-163279930	PACRG(intragenic)	AL078585.1	FALSE	_forebrain[9/9]	FALSE	TRUE	FALSE	659726	659619	FALSE	TRUE
chr6:163276830-163279930	PACRG(intragenic)	QKI	FALSE	_forebrain[9/9]	FALSE	TRUE	FALSE	659809	659619	FALSE	TRUE
chr6:17473150-17475105	CAP2(intragenic)	RBM24	FALSE	NA	TRUE	FALSE	FALSE	615600	615636	FALSE	TRUE
chr6:17931980-17933492	KIF13A(intragenic)	NHLRC1	FALSE	NA	TRUE	FALSE	FALSE	615820	615763	TRUE	FALSE
chr6:20867105-20870529	CDKAL1(intragenic)	SOX4	FALSE	_neural_tube[10/10]__hindbrain_(rhombencephalon)[7/10]__forebrain[9/10]_midbrain_(mesencephalon)[8/10]_	FALSE	TRUE	FALSE	616879	616654	FALSE	TRUE
chr6:3246856-3249920	TUBB2B-PSMG4	BPHL	FALSE	NA	FALSE	FALSE	TRUE	611359	611401	FALSE	FALSE
chr6:3246856-3249920	TUBB2B-PSMG4	PSMG4	TRUE	NA	FALSE	FALSE	TRUE	611399	611401	FALSE	FALSE
chr6:3246856-3249920	TUBB2B-PSMG4	BPHL	FALSE	NA	FALSE	FALSE	TRUE	611359	611402	FALSE	FALSE
chr6:3246856-3249920	TUBB2B-PSMG4	PSMG4	TRUE	NA	FALSE	FALSE	TRUE	611399	611402	FALSE	FALSE
chr6:41380559-41381515	NCR2-FOXP4	FOXP4	TRUE	NA	TRUE	FALSE	FALSE	622191	622162	FALSE	FALSE
chr6:41380559-41381515	NCR2-FOXP4	MDFI	FALSE	NA	TRUE	FALSE	FALSE	622214	622162	FALSE	FALSE
chr6:41380559-41381515	NCR2-FOXP4	FOXP4	TRUE	NA	FALSE	FALSE	TRUE	622191	622163	FALSE	FALSE
chr6:41380559-41381515	NCR2-FOXP4	MDFI	FALSE	NA	TRUE	FALSE	FALSE	622214	622163	FALSE	FALSE
chr6:41380559-41381515	NCR2-FOXP4	PRICKLE4	FALSE	NA	FALSE	TRUE	FALSE	622242	622163	FALSE	FALSE
chr6:41434455-41435695	NCR2-FOXP4	FOXP4	TRUE	NA	TRUE	FALSE	FALSE	622191	622175	FALSE	FALSE
chr6:41436815-41438024	NCR2-FOXP4	FOXP4	TRUE	NA	TRUE	FALSE	FALSE	622191	622175	FALSE	FALSE
chr6:43760764-43762277	VEGFA-LOC100132354	SLC29A1	FALSE	NA	TRUE	FALSE	FALSE	622786	622701	TRUE	FALSE
chr6:50685244-50686237	TFAP2D(intragenic)	TFAP2B	FALSE	_hindbrain_(rhombencephalon)[3/6]__midbrain_(mesencephalon)[6/6]	TRUE	FALSE	FALSE	624913	624870	FALSE	FALSE
chr6:52253728-52256212	PAQR8(intragenic)	MCM3	FALSE	_hindbrain_(rhombencephalon)[5/8]__midbrain_(mesencephalon)[5/8]	FALSE	FALSE	TRUE	625385	625413	FALSE	FALSE
chr6:97912825-97915982	LOC101927314(intragenic)	POU3F2	FALSE	_forebrain[6/7]__other[3/7]	FALSE	TRUE	FALSE	639568	639131	FALSE	TRUE
chr6:98074091-98075722	LOC101927314(intragenic)	POU3F2	FALSE	_forebrain[8/8]__limb[3/8]	TRUE	FALSE	FALSE	639568	639190	FALSE	FALSE
chr6:98278782-98280694	LOC101927314-MIR2113	POU3F2	FALSE	NA	FALSE	TRUE	FALSE	639568	639262	FALSE	FALSE
chr6:98491829-98493238	MIR2113-POU3F2	POU3F2	TRUE	_hindbrain_(rhombencephalon)[9/11]	FALSE	TRUE	FALSE	639568	639330	FALSE	TRUE
chr6:98504034-98506058	MIR2113-POU3F2	POU3F2	TRUE	_neural_tube[3/4]__other[4/4]	FALSE	FALSE	TRUE	639568	639333	FALSE	FALSE
chr6:99089361-99091043	MIR2113-POU3F2	POU3F2	TRUE	_neural_tube[7/9]__midbrain_(mesencephalon)[5/9]__forebrain[7/9]	FALSE	TRUE	FALSE	639568	639514	FALSE	TRUE
chr7:107587162-107588892	LAMB1(intragenic)	LAMB1	TRUE	"_dorsal_root_ganglion[4/9]__limb[5/9]__cranial_nerve[5/9]_trigeminal_V_(ganglion,_cranial)[6/9]_"	FALSE	TRUE	FALSE	692200	692181	FALSE	TRUE
chr7:107587162-107588892	LAMB1(intragenic)	LAMB4	FALSE	"_dorsal_root_ganglion[4/9]__limb[5/9]__cranial_nerve[5/9]_trigeminal_V_(ganglion,_cranial)[6/9]_"	FALSE	TRUE	FALSE	692242	692181	FALSE	TRUE
chr7:107587162-107588892	LAMB1(intragenic)	NRCAM	FALSE	"_dorsal_root_ganglion[4/9]__limb[5/9]__cranial_nerve[5/9]_trigeminal_V_(ganglion,_cranial)[6/9]_"	FALSE	TRUE	FALSE	692348	692181	FALSE	TRUE
chr7:114052100-114053403	FOXP2(intragenic)	FOXP2	TRUE	NA	FALSE	FALSE	TRUE	694169	694272	FALSE	FALSE
chr7:114052100-114053403	FOXP2(intragenic)	PPP1R3A	FALSE	NA	TRUE	FALSE	FALSE	694163	694272	FALSE	FALSE
chr7:114052100-114053403	FOXP2(intragenic)	FOXP2	TRUE	NA	FALSE	TRUE	FALSE	694169	694273	FALSE	FALSE
chr7:114055419-114056748	FOXP2(intragenic)	FOXP2	TRUE	NA	FALSE	FALSE	TRUE	694169	694277	TRUE	FALSE
chr7:114287987-114290557	FOXP2(intragenic)	FOXP2	TRUE	NA	FALSE	TRUE	FALSE	694169	694371	FALSE	FALSE
chr7:114287987-114290557	FOXP2(intragenic)	FOXP2	TRUE	NA	FALSE	FALSE	TRUE	694169	694372	FALSE	FALSE
chr7:114295109-114296373	MIR3666-MDFIC	FOXP2	FALSE	_heart[3/6]	FALSE	TRUE	FALSE	694169	694375	FALSE	FALSE
chr7:114299711-114302078	MIR3666-MDFIC	FOXP2	FALSE	_midbrain_(mesencephalon)[3/7]__forebrain[6/7]	FALSE	FALSE	TRUE	694169	694376	FALSE	TRUE
chr7:114299711-114302078	MIR3666-MDFIC	FOXP2	FALSE	_midbrain_(mesencephalon)[3/7]__forebrain[6/7]	FALSE	FALSE	TRUE	694169	694377	FALSE	TRUE
chr7:114326912-114329772	MIR3666-MDFIC	FOXP2	FALSE	_hindbrain_(rhombencephalon)[6/11]	FALSE	FALSE	TRUE	694169	694383	FALSE	FALSE
chr7:114395170-114396591	MIR3666-MDFIC	FOXP2	FALSE	NA	FALSE	TRUE	FALSE	694169	694400	FALSE	FALSE
chr7:115113551-115114543	MDFIC-TFEC	FOXP2	FALSE	NA	FALSE	TRUE	FALSE	694169	694632	FALSE	FALSE
chr7:115115427-115117325	MDFIC-TFEC	FOXP2	FALSE	NA	FALSE	TRUE	FALSE	694169	694632	FALSE	FALSE
chr7:115313238-115315056	MDFIC-TFEC	FOXP2	FALSE	NA	FALSE	TRUE	FALSE	694169	694693	FALSE	FALSE
chr7:115993663-115997109	TES-CAV2	CAV1	FALSE	_other[6/9]	TRUE	FALSE	FALSE	694974	694918	FALSE	FALSE
chr7:130012949-130014460	CPA5-CPA1	MEST	FALSE	NA	FALSE	TRUE	FALSE	699303	699264	FALSE	FALSE
chr7:13450920-13451719	ARL4A-ETV1	SCIN	FALSE	_hindbrain_(rhombencephalon)[9/10]__midbrain_(mesencephalon)[9/10]	FALSE	TRUE	FALSE	664943	665185	FALSE	FALSE
chr7:150665549-150670065	KCNH2(intragenic)	ACCN3	FALSE	NA	TRUE	FALSE	FALSE	705194	705182	FALSE	FALSE
chr7:150665549-150670065	KCNH2(intragenic)	AGAP3	FALSE	NA	FALSE	TRUE	FALSE	705199	705182	FALSE	FALSE
chr7:151439778-151443512	PRKAG2-PRKAG2-AS1	CRYGN	FALSE	NA	TRUE	FALSE	FALSE	705273	705353	FALSE	FALSE
chr7:151439778-151443512	PRKAG2-PRKAG2-AS1	RHEB	FALSE	NA	FALSE	FALSE	TRUE	705298	705353	FALSE	FALSE
chr7:151439778-151443512	PRKAG2-PRKAG2-AS1	RHEB	FALSE	NA	FALSE	FALSE	TRUE	705298	705354	TRUE	FALSE
chr7:151453949-151457105	PRKAG2-PRKAG2-AS1	CRYGN	FALSE	_midbrain_(mesencephalon)[8/12]	FALSE	FALSE	TRUE	705273	705357	FALSE	FALSE
chr7:151453949-151457105	PRKAG2-PRKAG2-AS1	RHEB	FALSE	_midbrain_(mesencephalon)[8/12]	FALSE	TRUE	FALSE	705298	705357	FALSE	FALSE
chr7:155264047-155265809	EN2-CNPY1	BLACE	FALSE	_hindbrain_(rhombencephalon)[4/5]__midbrain_(mesencephalon)[4/5]	TRUE	FALSE	FALSE	706328	706351	FALSE	FALSE
chr7:19146921-19150251	HDAC9-TWIST1	FERD3L	FALSE	NA	FALSE	FALSE	TRUE	667088	667077	FALSE	FALSE
chr7:19146921-19150251	HDAC9-TWIST1	SP8	FALSE	NA	TRUE	FALSE	FALSE	667645	667077	FALSE	FALSE
chr7:20832628-20833902	SP8-RPL23P8	DNAH11	FALSE	_forebrain[5/6]__facial_mesenchyme[3/6]	FALSE	TRUE	FALSE	667885	667646	FALSE	FALSE
chr7:21080801-21082086	RPL23P8-SP4	SP8	FALSE	_neural_tube[12/16]__hindbrain_(rhombencephalon)[12/16]__forebrain[14/16]__midbrain_(mesencephalon)[13/16]__eye[12/16]__cranial_nerve[10/16]	FALSE	FALSE	TRUE	667645	667705	FALSE	TRUE
chr7:21080801-21082086	RPL23P8-SP4	SP8	FALSE	_neural_tube[12/16]__hindbrain_(rhombencephalon)[12/16]__forebrain[14/16]__midbrain_(mesencephalon)[13/16]__eye[12/16]__cranial_nerve[10/16]	FALSE	FALSE	TRUE	667645	667706	FALSE	TRUE
chr7:21084342-21085460	RPL23P8-SP4	SP8	FALSE	_midbrain_(mesencephalon)[4/8]	FALSE	TRUE	FALSE	667645	667709	FALSE	TRUE
chr7:25919000-25922541	RNU6-16P-MIR148A	C7orf71	FALSE	_somite[9/9]__limb[9/9]	FALSE	FALSE	TRUE	669448	669229	TRUE	FALSE
chr7:25919000-25922541	RNU6-16P-MIR148A	CBX3	FALSE	_somite[9/9]__limb[9/9]	FALSE	FALSE	TRUE	669325	669229	TRUE	FALSE
chr7:25919000-25922541	RNU6-16P-MIR148A	KIAA0087	FALSE	_somite[9/9]__limb[9/9]	FALSE	TRUE	FALSE	669419	669229	TRUE	FALSE
chr7:25919000-25922541	RNU6-16P-MIR148A	NFE2L3	FALSE	_somite[9/9]__limb[9/9]	TRUE	FALSE	FALSE	669303	669229	TRUE	FALSE
chr7:2651286-2654820	IQCE-TTYH3	BRAT1	FALSE	NA	FALSE	TRUE	FALSE	662186	662200	FALSE	FALSE
chr7:2651286-2654820	IQCE-TTYH3	LFNG	FALSE	NA	FALSE	FALSE	TRUE	662182	662200	FALSE	FALSE
chr7:27156051-27156664	HOXA3(intragenic)	HOXA2	FALSE	NA	FALSE	FALSE	TRUE	669600	669602	FALSE	FALSE
chr7:27156051-27156664	HOXA3(intragenic)	HOXA5	FALSE	NA	TRUE	FALSE	FALSE	669614	669602	FALSE	FALSE
chr7:42532168-42534364	GLI3-LOC101928795	GLI3	TRUE	NA	FALSE	TRUE	FALSE	674186	674262	FALSE	FALSE
chr7:50449432-50450191	IKZF1(intragenic)	ZPBP	FALSE	NA	TRUE	FALSE	FALSE	676321	676401	FALSE	FALSE
chr7:5671918-5676544	RNF216(intragenic)	ACTB	FALSE	_midbrain_(mesencephalon)[4/5]__branchial_arch[5/5]__other[4/5]_facial_mesenchyme[5/5]_	FALSE	FALSE	TRUE	662837	662846	FALSE	FALSE
chr7:5671918-5676544	RNF216(intragenic)	FBXL18	FALSE	_midbrain_(mesencephalon)[4/5]__branchial_arch[5/5]__other[4/5]_facial_mesenchyme[5/5]_	TRUE	FALSE	FALSE	662834	662846	FALSE	FALSE
chr7:5671918-5676544	RNF216(intragenic)	FSCN1	FALSE	_midbrain_(mesencephalon)[4/5]__branchial_arch[5/5]__other[4/5]_facial_mesenchyme[5/5]_	FALSE	FALSE	TRUE	662840	662846	FALSE	FALSE
chr7:5671918-5676544	RNF216(intragenic)	TNRC18	FALSE	_midbrain_(mesencephalon)[4/5]__branchial_arch[5/5]__other[4/5]_facial_mesenchyme[5/5]_	TRUE	FALSE	FALSE	662825	662846	FALSE	FALSE
chr7:95236622-95240458	PDK4-DYNC1I1	CASD1	FALSE	_heart[10/15]__other[11/15]	FALSE	TRUE	FALSE	688587	688930	FALSE	FALSE
chr7:95705089-95705696	DYNC1I1(intragenic)	DLX5	FALSE	_limb[8/8]__genital_tubercle[4/8]	FALSE	FALSE	TRUE	689377	689077	FALSE	FALSE
chr7:95705089-95705696	DYNC1I1(intragenic)	SHFM1	FALSE	_limb[8/8]__genital_tubercle[4/8]	TRUE	FALSE	FALSE	689284	689077	FALSE	FALSE
chr7:95705089-95705696	DYNC1I1(intragenic)	SLC25A13	FALSE	_limb[8/8]__genital_tubercle[4/8]	TRUE	FALSE	FALSE	689169	689077	FALSE	FALSE
chr7:95726279-95727680	DYNC1I1(intragenic)	DLX5	FALSE	_limb[3/3]	FALSE	TRUE	FALSE	689377	689089	FALSE	FALSE
chr7:96124918-96125415	C7orf76(intragenic)	AC092031.1	FALSE	_branchial_arch[8/11]	FALSE	FALSE	TRUE	689222	689220	FALSE	FALSE
chr7:99594233-99596427	AZGP1P1-ZKSCAN1	COPS6	FALSE	NA	FALSE	TRUE	FALSE	690173	690152	FALSE	TRUE
chr7:99594233-99596427	AZGP1P1-ZKSCAN1	ZNF498	FALSE	NA	TRUE	FALSE	FALSE	690044	690152	FALSE	TRUE
chr8:11604182-11604695	GATA4(intragenic)	C8orf12	FALSE	_heart[6/13]	FALSE	TRUE	FALSE	710508	710592	FALSE	FALSE
chr8:11604182-11604695	GATA4(intragenic)	DEFB136	FALSE	_heart[6/13]	FALSE	FALSE	TRUE	710648	710592	FALSE	FALSE
chr8:11604182-11604695	GATA4(intragenic)	FAM167A	FALSE	_heart[6/13]	FALSE	FALSE	TRUE	710539	710592	FALSE	FALSE
chr8:11604182-11604695	GATA4(intragenic)	RP11-148O21.3	FALSE	_heart[6/13]	FALSE	FALSE	TRUE	710558	710592	FALSE	FALSE
chr8:145235516-145237210	MROH1(intragenic)	BOP1	FALSE	NA	TRUE	FALSE	FALSE	750334	750312	FALSE	FALSE
chr8:28370867-28371860	MIR4288-EXTL3	FZD3	FALSE	_neural_tube[4/7]__hindbrain_(rhombencephalon)[4/7]__forebrain[4/7]_midbrain_(mesencephalon)[4/7]_	FALSE	TRUE	FALSE	715489	715493	FALSE	TRUE
chr8:30135042-30138909	DCTN6-RBPMS-AS1	RBPMS	TRUE	_heart[15/17]__melanocytes[7/17]	FALSE	FALSE	TRUE	716024	716001	TRUE	TRUE
chr8:30135042-30138909	DCTN6-RBPMS-AS1	RBPMS	TRUE	_heart[15/17]__melanocytes[7/17]	FALSE	FALSE	TRUE	716024	716002	FALSE	FALSE
chr8:32063683-32067187	NRG1-IT1-NRG1-IT3	NRG1	TRUE	NA	TRUE	FALSE	FALSE	716430	716627	FALSE	FALSE
chr8:32064662-32066126	NRG1-IT1-NRG1-IT3	NRG1	TRUE	NA	TRUE	FALSE	FALSE	716430	716627	FALSE	FALSE
chr8:36957851-36958723	KCNU1-ZNF703	ERLIN2	FALSE	_forebrain[6/7]__cranial_nerve[7/7]	FALSE	TRUE	FALSE	718273	718097	FALSE	FALSE
chr8:36957851-36958723	KCNU1-ZNF703	ZNF703	TRUE	_forebrain[6/7]__cranial_nerve[7/7]	FALSE	FALSE	TRUE	718265	718097	FALSE	FALSE
chr8:6385759-6386963	ANGPT2(intragenic)	ANGPT2	TRUE	NA	FALSE	TRUE	FALSE	709153	709149	FALSE	FALSE
chr8:77598007-77600645	ZFHX4(intragenic)	PEX2	FALSE	_midbrain_(mesencephalon)[4/6]__forebrain[4/6]	FALSE	FALSE	TRUE	729848	729736	FALSE	TRUE
chr8:77598007-77600645	ZFHX4(intragenic)	PEX2	FALSE	_midbrain_(mesencephalon)[4/6]__forebrain[4/6]	FALSE	TRUE	FALSE	729848	729737	FALSE	TRUE
chr8:80874361-80876746	MRPS28(intragenic)	HEY1	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[8/8]__cranial_nerve[5/8]_midbrain_(mesencephalon)[8/8]_	FALSE	TRUE	FALSE	730729	730784	TRUE	TRUE
chr8:80874361-80876746	MRPS28(intragenic)	HEY1	FALSE	_neural_tube[8/8]__hindbrain_(rhombencephalon)[8/8]__cranial_nerve[5/8]_midbrain_(mesencephalon)[8/8]_	FALSE	TRUE	FALSE	730729	730785	TRUE	TRUE
chr9:100624863-100626679	FOXE1-C9orf156	FOXE1	TRUE	_facial_mesenchyme[3/11]	FALSE	FALSE	TRUE	774639	774641	FALSE	FALSE
chr9:109181334-109184572	TMEM38B-MIR8081	ZNF462	FALSE	NA	FALSE	TRUE	FALSE	777401	777264	FALSE	FALSE
chr9:128525348-128527214	PBX3(intragenic)	FAM125B	FALSE	NA	FALSE	TRUE	FALSE	782887	782746	FALSE	FALSE
chr9:133353647-133355097	ASS1(intragenic)	EXOSC2	FALSE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[3/4]__forebrain[3/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[3/4]"	FALSE	FALSE	TRUE	783701	783656	TRUE	FALSE
chr9:133353647-133355097	ASS1(intragenic)	FUBP3	FALSE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[3/4]__forebrain[3/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[3/4]"	FALSE	FALSE	TRUE	783671	783656	TRUE	FALSE
chr9:133353647-133355097	ASS1(intragenic)	PRDM12	FALSE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[3/4]__forebrain[3/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[3/4]"	FALSE	FALSE	TRUE	783697	783656	TRUE	FALSE
chr9:134110296-134115184	NUP214-FAM78A	FAM78A	TRUE	_somite[12/14]__branchial_arch[11/14]__heart[12/14]	TRUE	FALSE	FALSE	783831	783824	TRUE	FALSE
chr9:22078885-22082105	CDKN2B-DMRTA1	CDKN2B	TRUE	NA	TRUE	FALSE	FALSE	757438	757457	FALSE	FALSE
chr9:22102664-22104753	CDKN2B-DMRTA1	MTAP	FALSE	NA	TRUE	FALSE	FALSE	757377	757468	FALSE	FALSE
chr9:22106994-22109800	CDKN2B-DMRTA1	CDKN2B	TRUE	NA	TRUE	FALSE	FALSE	757438	757469	FALSE	FALSE
chr9:22106994-22109800	CDKN2B-DMRTA1	CDKN2B	TRUE	NA	FALSE	FALSE	TRUE	757438	757470	FALSE	FALSE
chr9:22106994-22109800	CDKN2B-DMRTA1	MTAP	FALSE	NA	FALSE	TRUE	FALSE	757377	757470	FALSE	FALSE
chr9:22116987-22119574	CDKN2B-DMRTA1	CDKN2B	TRUE	NA	FALSE	FALSE	TRUE	757438	757470	FALSE	FALSE
chr9:22116987-22119574	CDKN2B-DMRTA1	MTAP	FALSE	NA	FALSE	TRUE	FALSE	757377	757470	FALSE	FALSE
chr9:22116987-22119574	CDKN2B-DMRTA1	CDKN2B	TRUE	NA	FALSE	FALSE	TRUE	757438	757471	FALSE	FALSE
chr9:2240936-2242833	SMARCA2-VLDLR-AS1	KCNV2	FALSE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[4/4]__forebrain[4/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[4/4]__cranial_nerve[4/4]"	FALSE	TRUE	FALSE	751331	751166	FALSE	FALSE
chr9:2240936-2242833	SMARCA2-VLDLR-AS1	KIAA0020	FALSE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[4/4]__forebrain[4/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[4/4]__cranial_nerve[4/4]"	FALSE	TRUE	FALSE	751373	751166	FALSE	FALSE
chr9:2240936-2242833	SMARCA2-VLDLR-AS1	VLDLR	TRUE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[4/4]__forebrain[4/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[4/4]__cranial_nerve[4/4]"	FALSE	FALSE	TRUE	751293	751166	FALSE	FALSE
chr9:2240936-2242833	SMARCA2-VLDLR-AS1	VLDLR	TRUE	"_neural_tube[4/4]__hindbrain_(rhombencephalon)[4/4]__forebrain[4/4]__midbrain_(mesencephalon)[4/4]__trigeminal_V_(ganglion,_cranial)[4/4]__cranial_nerve[4/4]"	FALSE	FALSE	TRUE	751293	751167	FALSE	FALSE
chr9:37251207-37252223	ZCCHC7(intragenic)	PAX5	FALSE	_hindbrain_(rhombencephalon)[8/8]__midbrain_(mesencephalon)[8/8]	TRUE	FALSE	FALSE	761982	762041	TRUE	FALSE
chr9:37336630-37338306	ZCCHC7(intragenic)	PAX5	FALSE	NA	TRUE	FALSE	FALSE	761982	762070	FALSE	FALSE
chr9:71422469-71425428	FAM122A-LOC101927069	PRKACG	FALSE	NA	TRUE	FALSE	FALSE	766064	766004	FALSE	FALSE
chr9:968797-970093	DMRT1-DMRT3	DMRT1	TRUE	NA	FALSE	FALSE	TRUE	750741	750781	FALSE	FALSE
chr9:973435-975288	DMRT1-DMRT3	DMRT1	TRUE	_forebrain[7/7]	FALSE	FALSE	TRUE	750741	750781	FALSE	FALSE
chr9:98257859-98259405	LOC100507346-LINC00476	FANCC	FALSE	_neural_tube[4/5]__hindbrain_(rhombencephalon)[4/5]__forebrain[3/5]_midbrain_(mesencephalon)[4/5]_	FALSE	TRUE	FALSE	773907	773953	FALSE	TRUE
chr9:98274342-98275314	LOC100507346-LINC00476	C9orf102	FALSE	_forebrain[5/8]	FALSE	TRUE	FALSE	774073	773959	FALSE	FALSE
chr9:98274342-98275314	LOC100507346-LINC00476	FANCC	FALSE	_forebrain[5/8]	FALSE	FALSE	TRUE	773907	773959	FALSE	FALSE
chrX:123350827-123352587	STAG2-SH2D1A	STAG2	TRUE	_hindbrain_(rhombencephalon)[8/8]__midbrain_(mesencephalon)[8/8]__limb[7/8]__dorsal_root_ganglion[7/8]__branchial_arch[7/8]__cranial_nerve[7/8]__nose[6/8]_	FALSE	TRUE	FALSE	820801	820869	FALSE	TRUE
chrX:139169379-139171545	CXorf66-LOC389895	SOX3	FALSE	_hindbrain_(rhombencephalon)[4/5]__forebrain[5/5]	FALSE	TRUE	FALSE	825713	825600	FALSE	FALSE
chrX:139332133-139333376	LOC389895-SOX3	SOX3	TRUE	_neural_tube[9/11]__hindbrain_(rhombencephalon)[9/11]__cranial_nerve[8/11]_midbrain_(mesencephalon)[9/11]_	FALSE	TRUE	FALSE	825713	825633	FALSE	FALSE
chrX:139380916-139382199	LOC389895-SOX3	SOX3	TRUE	NA	FALSE	TRUE	FALSE	825713	825646	FALSE	FALSE
chrX:24864231-24865733	SCARNA23-ARX	ARX	TRUE	NA	FALSE	TRUE	FALSE	792096	792033	FALSE	FALSE