Basic Statistics
Measure | Value |
---|---|
Filename | GF-S1.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13036850 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 204395 | 1.5678250497627877 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 87389 | 0.6703229691221423 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 55596 | 0.4264527090516498 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 31070 | 0.23832444187054388 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 27058 | 0.20755013672781383 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 25742 | 0.1974556737248645 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 23015 | 0.1765380440827347 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 19278 | 0.14787314420277906 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 18391 | 0.14106935340975774 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 16515 | 0.1266793742353406 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 16134 | 0.12375688912582411 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8725 | 0.0 | 73.61813 | 2 |
ATCGGAA | 8940 | 0.0 | 71.06557 | 3 |
AGATCGG | 9100 | 0.0 | 70.13074 | 1 |
AGAGCGT | 9580 | 0.0 | 66.2186 | 9 |
AAGAGCG | 9945 | 0.0 | 64.16552 | 8 |
CGGAAGA | 11310 | 0.0 | 57.00832 | 5 |
TCGGAAG | 12265 | 0.0 | 53.13887 | 4 |
GTATACC | 44000 | 0.0 | 51.676292 | 94 |
CGTCTGG | 5800 | 0.0 | 48.93944 | 1 |
CGCCGTA | 7570 | 0.0 | 39.6059 | 46-47 |
CGTGTCT | 5900 | 0.0 | 38.94995 | 1 |
CGTATCA | 7970 | 0.0 | 37.09275 | 50-51 |
GTCGCCG | 8230 | 0.0 | 36.800243 | 44-45 |
CCGTATC | 8550 | 0.0 | 35.536594 | 48-49 |
TCGCCGT | 8120 | 0.0 | 35.360653 | 46-47 |
GCCGTAT | 8305 | 0.0 | 35.339973 | 48-49 |
TCGTGTA | 8990 | 0.0 | 35.023148 | 14-15 |
GGTCGCC | 8470 | 0.0 | 34.620136 | 44-45 |
GAGCGTC | 9385 | 0.0 | 33.921955 | 10-11 |
TGGTCGC | 9000 | 0.0 | 33.391666 | 42-43 |