Basic Statistics
Measure | Value |
---|---|
Filename | CON-S7.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26512891 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1074753 | 4.0536997643900845 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 432078 | 1.6296902514327842 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 130747 | 0.4931450138726856 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 80140 | 0.3022680551887005 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATCTCGTATG | 72518 | 0.27351977571966785 | TruSeq Adapter, Index 3 (97% over 37bp) |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 61788 | 0.2330488968554957 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 53752 | 0.20273911283382864 | No Hit |
GTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC | 50542 | 0.19063179492572124 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 48147 | 0.18159845337122987 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 42628 | 0.1607821644195648 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 35078 | 0.132305450959686 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 34942 | 0.13179249294239545 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 33017 | 0.12453187394765813 | No Hit |
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC | 31576 | 0.11909678201445478 | No Hit |
GGACAGCTCTTCTGGAACGGAAAAAACCTTTAATAGTGAATAATTAACAA | 30285 | 0.11422745260032185 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 29880 | 0.11269989379883168 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 49595 | 0.0 | 85.69647 | 6 |
CGCGGTG | 51750 | 0.0 | 82.15911 | 7 |
ATGTGAG | 137475 | 0.0 | 75.50542 | 3 |
GAGGGCG | 140860 | 0.0 | 74.96988 | 7 |
GCGGTGG | 56875 | 0.0 | 74.86374 | 8 |
GTGAGGG | 141510 | 0.0 | 74.598274 | 5 |
TGAGGGC | 142005 | 0.0 | 74.33679 | 6 |
CGGTGGC | 57920 | 0.0 | 73.54701 | 9 |
GGATGTG | 144060 | 0.0 | 71.947624 | 1 |
GGGCGAT | 147235 | 0.0 | 71.83757 | 9 |
AGGGCGA | 147075 | 0.0 | 71.77684 | 8 |
GATGTGA | 151100 | 0.0 | 68.64132 | 2 |
CTCCCTC | 143385 | 0.0 | 67.42797 | 94 |
CGGGCGC | 64370 | 0.0 | 66.02316 | 3 |
TGTGAGG | 162205 | 0.0 | 65.08932 | 4 |
GATCGGA | 14190 | 0.0 | 64.43222 | 2 |
AGATCGG | 14425 | 0.0 | 63.32074 | 1 |
CTAATCC | 20785 | 0.0 | 62.782017 | 2 |
ATCCTAG | 21925 | 0.0 | 59.989098 | 5 |
GGGCGCG | 71425 | 0.0 | 59.98228 | 4 |