Basic Statistics
Measure | Value |
---|---|
Filename | GFR-P4.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25868955 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1662459 | 6.42646368977796 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 243981 | 0.9431420789900481 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 207394 | 0.8017100033611717 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 113413 | 0.4384135346789231 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 103444 | 0.3998769954178667 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 90991 | 0.3517382128501132 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 62190 | 0.24040399003361365 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG | 57695 | 0.22302794991138994 | TruSeq Adapter, Index 12 (100% over 49bp) |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 47010 | 0.18172361427046435 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 41474 | 0.1603234456127045 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 37148 | 0.14360069821142757 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 34106 | 0.13184142923438538 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 33302 | 0.12873345676313558 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 28468 | 0.11004696556161622 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 33570 | 0.0 | 79.74314 | 6 |
CTCCCTC | 191580 | 0.0 | 77.672585 | 94 |
GGGCGAT | 213370 | 0.0 | 76.00609 | 9 |
GGGCGCG | 35490 | 0.0 | 75.44508 | 4 |
CGCGGTG | 35540 | 0.0 | 75.42185 | 7 |
AGGGCGA | 216695 | 0.0 | 74.86644 | 8 |
GAGGGCG | 219595 | 0.0 | 73.87047 | 7 |
ATGTGAG | 219880 | 0.0 | 72.32998 | 3 |
GTGAGGG | 225560 | 0.0 | 71.899185 | 5 |
TGAGGGC | 226180 | 0.0 | 71.69738 | 6 |
CCGGGCG | 36775 | 0.0 | 71.61953 | 2 |
CGGGCGC | 37505 | 0.0 | 70.93994 | 3 |
GATGTGA | 224650 | 0.0 | 70.74188 | 2 |
GGCGCGG | 38195 | 0.0 | 70.37276 | 5 |
TGTGAGG | 230445 | 0.0 | 70.295494 | 4 |
GGATGTG | 226980 | 0.0 | 70.04232 | 1 |
GATCGGA | 12315 | 0.0 | 64.62285 | 2 |
GCGGTGG | 41775 | 0.0 | 64.18824 | 8 |
CGGTGGC | 41915 | 0.0 | 63.93036 | 9 |
AGATCGG | 12500 | 0.0 | 63.515503 | 1 |