Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S6.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25024279 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 954831 | 3.815618424011337 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG | 124553 | 0.49772862586770233 | TruSeq Adapter, Index 1 (100% over 49bp) |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 121301 | 0.48473324646036753 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 111418 | 0.445239601108987 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 96393 | 0.3851979111965624 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 59964 | 0.23962328744816186 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 57287 | 0.22892567653997145 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 45255 | 0.18084437118048435 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 37519 | 0.14993039359895244 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 31942 | 0.12764403721681652 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 30313 | 0.12113435915576229 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 28218 | 0.11276248958061888 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 18315 | 0.0 | 77.02648 | 6 |
GGGCGAT | 131820 | 0.0 | 76.13737 | 9 |
AGGGCGA | 134500 | 0.0 | 74.58868 | 8 |
GGGCGCG | 19025 | 0.0 | 73.86005 | 4 |
GAGGGCG | 136970 | 0.0 | 73.199005 | 7 |
GATCGGA | 23275 | 0.0 | 73.17111 | 2 |
AGATCGG | 23590 | 0.0 | 72.209206 | 1 |
CTCCCTC | 134915 | 0.0 | 70.20777 | 94 |
ATGTGAG | 140020 | 0.0 | 69.953674 | 3 |
CGGGCGC | 19910 | 0.0 | 69.93901 | 3 |
GTGAGGG | 143570 | 0.0 | 69.771675 | 5 |
CGCGGTG | 20230 | 0.0 | 69.75855 | 7 |
TGAGGGC | 144045 | 0.0 | 69.70458 | 6 |
GATGTGA | 139950 | 0.0 | 67.77686 | 2 |
TGTGAGG | 148220 | 0.0 | 67.600746 | 4 |
GGATGTG | 141180 | 0.0 | 67.18904 | 1 |
CCGGGCG | 20350 | 0.0 | 67.08938 | 2 |
GGCGCGG | 21615 | 0.0 | 65.20675 | 5 |
ATCGGAA | 29600 | 0.0 | 59.471806 | 3 |
GCCGGGC | 24325 | 0.0 | 55.998657 | 1 |