Basic Statistics
Measure | Value |
---|---|
Filename | GF-P2.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19781093 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 397466 | 2.0093227406594774 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 181347 | 0.9167693615312359 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 56291 | 0.28456971513151474 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 56219 | 0.2842057311999898 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 46692 | 0.23604357959390818 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 44196 | 0.22342546996771107 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 37718 | 0.1906770267952332 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 37083 | 0.1874668907324787 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 36622 | 0.18513638250424283 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 31180 | 0.15762526367981788 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 31158 | 0.1575140463674075 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 26683 | 0.1348914339566575 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 26188 | 0.13238904442742372 | No Hit |
GATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATG | 22121 | 0.11182900762864822 | No Hit |
GGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCG | 21767 | 0.1100394199653174 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 20116 | 0.10169306620215576 | No Hit |
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 20035 | 0.10128358427919024 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 7855 | 0.0 | 65.85399 | 2 |
ATCGGAA | 8210 | 0.0 | 62.612057 | 3 |
AGATCGG | 8520 | 0.0 | 61.26575 | 1 |
GTATACC | 76325 | 0.0 | 56.522892 | 94 |
AGAGCGT | 9155 | 0.0 | 55.540928 | 9 |
CGTCTGG | 10800 | 0.0 | 55.342163 | 1 |
AAGAGCG | 9680 | 0.0 | 52.480217 | 8 |
CGGAAGA | 11900 | 0.0 | 44.508743 | 5 |
CGTGTCT | 9100 | 0.0 | 43.04651 | 1 |
TCGGAAG | 12570 | 0.0 | 42.6517 | 4 |
CGCCGTA | 6385 | 0.0 | 37.058445 | 46-47 |
CGTATCA | 6895 | 0.0 | 33.879684 | 50-51 |
GTCGCCG | 7325 | 0.0 | 32.81566 | 44-45 |
GTCTGGA | 121410 | 0.0 | 32.698303 | 1 |
GCCGTAT | 7345 | 0.0 | 31.76904 | 48-49 |
GGAGTCT | 137145 | 0.0 | 31.684166 | 5 |
GAGTCTT | 137835 | 0.0 | 31.538696 | 6 |
CCGTATC | 7560 | 0.0 | 31.5183 | 48-49 |
AGTCTTG | 138065 | 0.0 | 31.407713 | 7 |
TCGCCGT | 7315 | 0.0 | 31.351196 | 46-47 |