FastQCFastQC Report
Thu 29 Mar 2018
GF-P1.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-P1.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24056726
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG12613645.24329037958033No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2657041.1044894471508717No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1554400.6461394622027952No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA960580.3992978928221571No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA857650.3565115219751848No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC848500.35270801188823453No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG764650.31785289486191926No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG647850.2693009846809578TruSeq Adapter, Index 5 (100% over 49bp)
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT438730.18237311261723646No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG365920.1521071487450121No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA314350.1306703164844626No Hit
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA281020.11681556334806324No Hit
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT246310.10238716606740253No Hit
ATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTC245260.10195069769676887No Hit
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC241680.10046254839498941No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT416100.080.963796
CGCGGTG436050.077.278747
GGGCGAT1656350.074.471779
CTCCCTC1528250.073.8491294
AGGGCGA1685350.073.1521158
CGGGCGC459250.072.909773
GGGCGCG464400.072.708724
GAGGGCG1708350.072.1943057
CCGGGCG465950.071.094792
ATGTGAG1702750.071.085563
TGAGGGC1739700.070.863966
GTGAGGG1745400.070.668385
GGCGCGG486800.069.498235
GATGTGA1742250.069.395822
GCGGTGG488000.069.1969158
CGGTGGC491500.068.706029
GGATGTG1763400.068.574881
GATCGGA128400.068.095862
AGATCGG131100.066.675981
TGTGAGG1859450.066.273234