Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S8.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26113252 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1188148 | 4.549980982835841 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 256748 | 0.983209597946667 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 122712 | 0.4699223214328112 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 101499 | 0.38868770538422404 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 82977 | 0.3177582018509223 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 64581 | 0.24731121194709874 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 46013 | 0.17620555264430487 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATG | 42306 | 0.16200969530719497 | TruSeq Adapter, Index 3 (100% over 49bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 39367 | 0.15075487342595245 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 36416 | 0.139454097865712 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 32967 | 0.12624624462705755 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 27106 | 0.10380170190981959 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 39530 | 0.0 | 84.17841 | 6 |
GGGCGCG | 41480 | 0.0 | 80.26696 | 4 |
CGCGGTG | 41515 | 0.0 | 80.22173 | 7 |
CGGGCGC | 42115 | 0.0 | 78.49772 | 3 |
GGGCGAT | 156820 | 0.0 | 77.66052 | 9 |
AGGGCGA | 159725 | 0.0 | 76.24528 | 8 |
CCGGGCG | 42690 | 0.0 | 76.07914 | 2 |
GAGGGCG | 161645 | 0.0 | 75.322205 | 7 |
GGCGCGG | 44895 | 0.0 | 74.28795 | 5 |
CTCCCTC | 156995 | 0.0 | 72.71217 | 94 |
ATGTGAG | 164330 | 0.0 | 72.637634 | 3 |
TGAGGGC | 168530 | 0.0 | 72.25592 | 6 |
GTGAGGG | 169390 | 0.0 | 71.81886 | 5 |
GATGTGA | 164720 | 0.0 | 70.18275 | 2 |
TGTGAGG | 174725 | 0.0 | 69.584785 | 4 |
GCGGTGG | 48080 | 0.0 | 69.34618 | 8 |
CGGTGGC | 48210 | 0.0 | 69.09083 | 9 |
GGATGTG | 167665 | 0.0 | 68.96592 | 1 |
GCCGGGC | 48920 | 0.0 | 66.29957 | 1 |
CTATGCC | 53835 | 0.0 | 61.5933 | 94 |