Basic Statistics
Measure | Value |
---|---|
Filename | CON-S3.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24229804 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 593908 | 2.4511465301163806 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 269752 | 1.1133065707011085 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 87602 | 0.36154646566682913 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 64427 | 0.2658997984465743 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63550 | 0.26228028918434504 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 60220 | 0.248536884574056 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 57358 | 0.23672498547656434 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 54212 | 0.223740976196093 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 47154 | 0.19461156185993084 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 44593 | 0.1840419344704563 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 39214 | 0.16184200251888128 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 38705 | 0.15974128391628756 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 36677 | 0.1513714266941656 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 34529 | 0.1425063116482494 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 29345 | 0.12111117366033998 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 28075 | 0.1158696950251847 | No Hit |
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 27230 | 0.1123822545159672 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 9180 | 0.0 | 69.04364 | 2 |
AGATCGG | 9665 | 0.0 | 65.78878 | 1 |
ATCGGAA | 9715 | 0.0 | 65.10012 | 3 |
CGTCTGG | 15440 | 0.0 | 59.427433 | 1 |
GTATACC | 110605 | 0.0 | 57.5679 | 94 |
AGAGCGT | 10810 | 0.0 | 57.557613 | 9 |
AAGAGCG | 11190 | 0.0 | 55.980988 | 8 |
CGGAAGA | 14340 | 0.0 | 45.618534 | 5 |
CGTGTCT | 13175 | 0.0 | 45.406025 | 1 |
TCGGAAG | 15245 | 0.0 | 43.149937 | 4 |
CGCCGTA | 7785 | 0.0 | 38.212486 | 46-47 |
CGTATCA | 8170 | 0.0 | 35.583035 | 50-51 |
GTCTGGA | 167380 | 0.0 | 34.793594 | 1 |
GGAGTCT | 189300 | 0.0 | 33.83488 | 5 |
GAGTCTT | 190645 | 0.0 | 33.648983 | 6 |
TGGAGTC | 188880 | 0.0 | 33.56619 | 4 |
GTCGCCG | 9045 | 0.0 | 33.564392 | 44-45 |
AGTCTTG | 191060 | 0.0 | 33.516865 | 7 |
TCTGGAG | 178450 | 0.0 | 32.9905 | 2 |
GGTCGCC | 9175 | 0.0 | 32.44856 | 44-45 |