FastQCFastQC Report
Thu 29 Mar 2018
CON-S6.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S6.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22816311
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT4102081.7978717067802943No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1873930.8213115608390856No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC1448740.634958035065353Illumina Single End PCR Primer 1 (100% over 50bp)
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA799010.3501924566157956No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC587280.257394808477146No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT558150.2446276262626329No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC437350.19168304639606287No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA407200.17846881557671615No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG363850.15946924987128727No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG363290.15922381142157468No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT320490.1404653013363992No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA310100.1359115415283391No Hit
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG290180.127180945245706No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC271840.11914283601761914No Hit
GGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG258250.11318657078263003No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG251300.11014050430851857No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG245000.10737932174925209No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA218600.075.140352
AGATCGG226150.072.891661
ATCGGAA223900.072.822153
AGAGCGT232400.069.1167149
AAGAGCG241050.067.065988
CGGAAGA260600.063.1726535
TCGGAAG269600.061.29724
GTATACC756700.058.6080394
CGTCTGG112550.053.9469871
CGTGTCT107350.041.007211
CGCCGTA187600.040.95818346-47
CGTATCA192150.038.72420550-51
GTCGCCG202350.038.44735744-45
CCGTATC202300.037.96216648-49
GCCGTAT196700.037.7526648-49
TCGCCGT197950.037.29722246-47
GGTCGCC201950.037.15057844-45
TGGTCGC210550.036.84831242-43
TCGTGTA224300.035.9200414-15
GAGCGTC226600.035.70132410-11