Basic Statistics
Measure | Value |
---|---|
Filename | GFR-P4.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25868955 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 622223 | 2.4052885012169996 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 281202 | 1.0870249687318254 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 90563 | 0.3500837200420349 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 66884 | 0.25854929199884574 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 61703 | 0.23852142461881434 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 58748 | 0.22709846609575068 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 58079 | 0.22451235467377792 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 55070 | 0.21288065173100343 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 53690 | 0.20754607211617165 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 53237 | 0.20579493837304214 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 46771 | 0.18079972693137392 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 44237 | 0.17100420175457418 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 36942 | 0.14280437690660483 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 35649 | 0.1378061077457516 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 30054 | 0.11617786648127068 | No Hit |
GATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATG | 26392 | 0.1020219023149563 | No Hit |
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 26117 | 0.10095885202939198 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 9315 | 0.0 | 67.73937 | 2 |
AGATCGG | 9705 | 0.0 | 65.365105 | 1 |
ATCGGAA | 9645 | 0.0 | 65.1828 | 3 |
GTATACC | 114905 | 0.0 | 58.515846 | 94 |
CGTCTGG | 15820 | 0.0 | 56.98298 | 1 |
AGAGCGT | 11265 | 0.0 | 54.483604 | 9 |
AAGAGCG | 11645 | 0.0 | 53.47299 | 8 |
CGTGTCT | 13735 | 0.0 | 45.3988 | 1 |
CGGAAGA | 14325 | 0.0 | 45.07667 | 5 |
TCGGAAG | 16025 | 0.0 | 40.815125 | 4 |
CGCCGTA | 7840 | 0.0 | 37.674698 | 46-47 |
CGTATCA | 8080 | 0.0 | 35.62976 | 50-51 |
GTCTGGA | 175145 | 0.0 | 35.446346 | 1 |
GGAGTCT | 198825 | 0.0 | 34.171726 | 5 |
GAGTCTT | 199660 | 0.0 | 34.07737 | 6 |
TGGAGTC | 198485 | 0.0 | 33.84284 | 4 |
AGTCTTG | 200870 | 0.0 | 33.80178 | 7 |
TCTGGAG | 187255 | 0.0 | 33.4335 | 2 |
CTGGAGT | 205725 | 0.0 | 32.274902 | 3 |
GCCGTAT | 9145 | 0.0 | 31.632563 | 48-49 |