FastQCFastQC Report
Thu 29 Mar 2018
CON-S11.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S11.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25603258
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT3884291.5171077055896558No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1716530.6704342080214948No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC1038710.40569446279063387Illumina Single End PCR Primer 1 (100% over 50bp)
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC622120.24298470140011086No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC510470.19937696991531312No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC449600.17560265181876464No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA413880.16165130234597486No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG386730.1510471831358337No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG357010.1394392854221912No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA322150.12582383070154587No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT317890.12415997995255135No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA289840.11320434297853812No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG287600.11232945432178984No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA149500.075.738512
AGATCGG153950.073.4376141
ATCGGAA158250.071.171063
AGAGCGT170400.065.19299
AAGAGCG179350.062.149598
CGGAAGA207400.055.3784985
TCGGAAG217000.053.6134034
CGTCTGG125050.052.6887931
GTATACC881550.050.60204794
CGCCGTA132250.040.527446-47
CGTGTCT114700.039.1154861
CGTATCA138850.037.7458750-51
GTCGCCG145350.036.90613644-45
GCCGTAT143150.036.6729148-49
CCGTATC146250.036.6186248-49
GGTCGCC146350.035.8833144-45
TCGCCGT145350.035.79165346-47
GAGCGTC162600.034.34766410-11
TCGTGTA161100.034.24506414-15
TGGTCGC159000.033.58967242-43