FastQCFastQC Report
Thu 29 Mar 2018
GFR-S7.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGFR-S7.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30727228
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG9522033.0988900137688957No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2526830.8223423212793552No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC2186570.7116066571315838No Hit
GTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC1775630.577868592637123No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA1573710.5121548875153984No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA1134820.3693206559342092No Hit
CAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTG1093140.35575613914798954No Hit
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTT1007540.327898110431569No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA672000.21869854319432913No Hit
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC624080.20310325422130496No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC605850.19717040534863736No Hit
GCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTCGG537860.17504345006324684No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGA527150.1715579420310872No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG481200.15660377825165356TruSeq Adapter, Index 2 (100% over 49bp)
AAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAATGCG355960.11584513904085328No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT350780.11415933777039698No Hit
TTGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGA344920.11225223440266073No Hit
TGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCGGGTTAAGGCG342240.11138004378396905No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT339540.11050134428006327No Hit
AGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAGGGCGCGGGCCCGGGTGG330120.10743565934421419No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA323410.10525192835487795No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG316270.1029282563334382No Hit
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG314500.10235221999198886No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT302350.084.67636
CGCGGTG325850.078.584587
GCGACCT273850.078.091782
ATGTGAG1262050.075.985313
GTGAGGG1293900.075.741435
TGAGGGC1298550.075.6711046
GAGGGCG1311550.075.068577
CAACACG147150.072.270731
GGATGTG1286400.072.071631
GCGGTGG359700.071.254618
CTCCCTC1339900.068.92663694
ACACGGG156650.068.900523
AACACGG155100.068.7132642
CGACCTC343850.065.214553
GTTGATC249000.064.86627
CGGTGGC406200.063.0744559
GATCGGA106000.062.4557532
AGATCGG107900.061.605531
AGTGAAC334950.060.8985194
AGGGCGA1617250.060.864248