FastQCFastQC Report
Thu 29 Mar 2018
GF-P4.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-P4.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25345776
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG9247533.64854877593805No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1634250.6447819944435712No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA1359270.5362905440338461No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA908070.3582727157377229No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC685330.27039219473887877No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG619600.24445887945983583TruSeq Adapter, Index 8 (100% over 49bp)
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA489190.19300651911387523No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG476690.1880747308742885No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT440650.17385539902191197No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA282320.11138739646401041No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT243450.077.002196
GGGCGAT1185900.076.654959
AGGGCGA1212300.074.968088
GAGGGCG1235600.073.5340657
GGGCGCG256050.073.509764
CGCGGTG259700.072.161497
ATGTGAG1272750.070.116383
GTGAGGG1299050.069.948895
TGAGGGC1303950.069.715736
GATGTGA1300300.068.533182
CCGGGCG271850.067.95762
CGGGCGC276350.067.633483
GGATGTG1318500.067.520551
GGCGCGG280750.067.0423365
TGTGAGG1355500.066.983974
CTCCCTC1271500.065.5563394
GATCGGA137400.064.7305452
ACTAATC212800.063.7980161
AGATCGG141150.063.175371
CTAATCC222400.061.064332