Basic Statistics
Measure | Value |
---|---|
Filename | GF-P4.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25345776 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 924753 | 3.64854877593805 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 163425 | 0.6447819944435712 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 135927 | 0.5362905440338461 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 90807 | 0.3582727157377229 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 68533 | 0.27039219473887877 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG | 61960 | 0.24445887945983583 | TruSeq Adapter, Index 8 (100% over 49bp) |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 48919 | 0.19300651911387523 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 47669 | 0.1880747308742885 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 44065 | 0.17385539902191197 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 28232 | 0.11138739646401041 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 24345 | 0.0 | 77.00219 | 6 |
GGGCGAT | 118590 | 0.0 | 76.65495 | 9 |
AGGGCGA | 121230 | 0.0 | 74.96808 | 8 |
GAGGGCG | 123560 | 0.0 | 73.534065 | 7 |
GGGCGCG | 25605 | 0.0 | 73.50976 | 4 |
CGCGGTG | 25970 | 0.0 | 72.16149 | 7 |
ATGTGAG | 127275 | 0.0 | 70.11638 | 3 |
GTGAGGG | 129905 | 0.0 | 69.94889 | 5 |
TGAGGGC | 130395 | 0.0 | 69.71573 | 6 |
GATGTGA | 130030 | 0.0 | 68.53318 | 2 |
CCGGGCG | 27185 | 0.0 | 67.9576 | 2 |
CGGGCGC | 27635 | 0.0 | 67.63348 | 3 |
GGATGTG | 131850 | 0.0 | 67.52055 | 1 |
GGCGCGG | 28075 | 0.0 | 67.042336 | 5 |
TGTGAGG | 135550 | 0.0 | 66.98397 | 4 |
CTCCCTC | 127150 | 0.0 | 65.55633 | 94 |
GATCGGA | 13740 | 0.0 | 64.730545 | 2 |
ACTAATC | 21280 | 0.0 | 63.798016 | 1 |
AGATCGG | 14115 | 0.0 | 63.17537 | 1 |
CTAATCC | 22240 | 0.0 | 61.06433 | 2 |