Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S10.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20111009 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 220631 | 1.0970657911793487 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 80634 | 0.4009445771716377 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 48336 | 0.24034597170137012 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 47982 | 0.23858574176959493 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 32479 | 0.161498610039904 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 29144 | 0.14491565291428193 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 21290 | 0.1058624159533716 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 20844 | 0.10364472513537237 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 20645 | 0.10265521734886598 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8095 | 0.0 | 70.2865 | 2 |
AGATCGG | 8660 | 0.0 | 66.196686 | 1 |
ATCGGAA | 8750 | 0.0 | 64.8193 | 3 |
AGAGCGT | 9400 | 0.0 | 59.186623 | 9 |
AAGAGCG | 9825 | 0.0 | 57.056965 | 8 |
GTATACC | 50915 | 0.0 | 50.536667 | 94 |
CGGAAGA | 11630 | 0.0 | 50.468227 | 5 |
CGTCTGG | 7390 | 0.0 | 47.115963 | 1 |
TCGGAAG | 12715 | 0.0 | 45.71349 | 4 |
CGCCGTA | 6780 | 0.0 | 38.780586 | 46-47 |
GTCGCCG | 7585 | 0.0 | 35.437126 | 44-45 |
CGTATCA | 7335 | 0.0 | 34.7626 | 50-51 |
TCGCCGT | 7530 | 0.0 | 33.85702 | 46-47 |
GGTCGCC | 7840 | 0.0 | 33.415417 | 44-45 |
GTCTGGA | 71240 | 0.0 | 33.20348 | 1 |
GCCGTAT | 7730 | 0.0 | 33.106083 | 48-49 |
GGAGTCT | 79675 | 0.0 | 32.61068 | 5 |
GAGTCTT | 80700 | 0.0 | 32.21291 | 6 |
CCGTATC | 8135 | 0.0 | 32.208958 | 48-49 |
GAGCGTC | 8710 | 0.0 | 32.072865 | 10-11 |