Basic Statistics
Measure | Value |
---|---|
Filename | CON-S6.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22816311 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1092940 | 4.790169629086841 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 291802 | 1.2789184018398065 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCATCTCGTATG | 147536 | 0.6466251270856187 | TruSeq Adapter, Index 16 (97% over 49bp) |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 124467 | 0.5455176342924147 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 103884 | 0.4553058555346655 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 64747 | 0.2837750589917888 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 55995 | 0.24541653556528048 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 32971 | 0.14450627009773842 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 32105 | 0.1407107397861118 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 25666 | 0.11248970089862467 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 35260 | 0.0 | 81.43928 | 6 |
GGGCGCG | 36965 | 0.0 | 77.978966 | 4 |
CGCGGTG | 37210 | 0.0 | 77.20047 | 7 |
GGGCGAT | 139910 | 0.0 | 76.58079 | 9 |
CGGGCGC | 37730 | 0.0 | 75.91217 | 3 |
CCGGGCG | 37605 | 0.0 | 75.42699 | 2 |
AGGGCGA | 142535 | 0.0 | 75.15939 | 8 |
GAGGGCG | 145040 | 0.0 | 73.88367 | 7 |
GGCGCGG | 39370 | 0.0 | 73.25128 | 5 |
GATCGGA | 25690 | 0.0 | 72.350174 | 2 |
ATGTGAG | 147285 | 0.0 | 71.41844 | 3 |
CTCCCTC | 137225 | 0.0 | 71.37966 | 94 |
AGATCGG | 26065 | 0.0 | 71.305595 | 1 |
TGAGGGC | 151080 | 0.0 | 70.962074 | 6 |
GTGAGGG | 151100 | 0.0 | 70.93417 | 5 |
GATGTGA | 149750 | 0.0 | 70.18633 | 2 |
GGATGTG | 152435 | 0.0 | 68.946075 | 1 |
TGTGAGG | 156815 | 0.0 | 68.2681 | 4 |
CGGTGGC | 42340 | 0.0 | 67.93683 | 9 |
GCGGTGG | 42475 | 0.0 | 67.67561 | 8 |