Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S5.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26417955 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 461992 | 1.748780327621877 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 188593 | 0.7138819034251516 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 98860 | 0.37421518811732396 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 77351 | 0.29279707683656814 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63970 | 0.24214591931888746 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 42478 | 0.16079215821209475 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 41284 | 0.15627250481727295 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 40410 | 0.1529641488146982 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 36566 | 0.13841343889033045 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 31620 | 0.11969132357141195 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 30452 | 0.1152700880897102 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 29325 | 0.1110040500863901 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 26911 | 0.1018663253836264 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 7890 | 0.0 | 63.837864 | 2 |
GTATACC | 82695 | 0.0 | 61.336002 | 94 |
AGATCGG | 8910 | 0.0 | 56.696617 | 1 |
ATCGGAA | 8875 | 0.0 | 56.228035 | 3 |
CGTCTGG | 13155 | 0.0 | 53.297195 | 1 |
AGAGCGT | 9750 | 0.0 | 49.928513 | 9 |
AAGAGCG | 10540 | 0.0 | 47.345352 | 8 |
CGGAAGA | 12590 | 0.0 | 40.721577 | 5 |
CGTGTCT | 11355 | 0.0 | 36.33572 | 1 |
GTCTGGA | 130045 | 0.0 | 36.269085 | 1 |
GGAGTCT | 144290 | 0.0 | 35.22215 | 5 |
GAGTCTT | 146120 | 0.0 | 34.888847 | 6 |
AGTCTTG | 145965 | 0.0 | 34.8177 | 7 |
TGGAGTC | 145435 | 0.0 | 34.670868 | 4 |
CGCCGTA | 6535 | 0.0 | 34.660793 | 46-47 |
TCGGAAG | 15090 | 0.0 | 34.346283 | 4 |
TCTGGAG | 141155 | 0.0 | 33.575798 | 2 |
CTGGAGT | 152225 | 0.0 | 32.859158 | 3 |
GTCTTGG | 159060 | 0.0 | 32.08502 | 8 |
CGTATCA | 7090 | 0.0 | 31.190594 | 50-51 |