Basic Statistics
Measure | Value |
---|---|
Filename | CON-S10.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16681665 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 401938 | 2.4094597271915004 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 170291 | 1.020827357461021 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 45167 | 0.27075834456572534 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 44780 | 0.2684384322548139 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 42814 | 0.2566530379311658 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 38880 | 0.23307026007296033 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 34847 | 0.20889401627475435 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 33930 | 0.20339696307293065 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 29949 | 0.17953243875836133 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 27336 | 0.1638685347056184 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 26333 | 0.1578559454347033 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 25125 | 0.15061446204560516 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 19770 | 0.11851334983648215 | No Hit |
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 19163 | 0.11487462432556941 | No Hit |
GATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATG | 17304 | 0.10373065278555828 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 16834 | 0.10091318822191908 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATACC | 79775 | 0.0 | 55.309036 | 94 |
CGTCTGG | 8760 | 0.0 | 51.488857 | 1 |
GATCGGA | 2700 | 0.0 | 46.287853 | 2 |
CGTGTCT | 8385 | 0.0 | 42.461132 | 1 |
AGATCGG | 3125 | 0.0 | 39.43211 | 1 |
ATCGGAA | 3175 | 0.0 | 39.21809 | 3 |
GTCTGGA | 111455 | 0.0 | 36.172737 | 1 |
GGAGTCT | 127495 | 0.0 | 34.956093 | 5 |
TGGAGTC | 126795 | 0.0 | 34.79388 | 4 |
GAGTCTT | 128405 | 0.0 | 34.756264 | 6 |
AGTCTTG | 129205 | 0.0 | 34.522053 | 7 |
TCTGGAG | 119250 | 0.0 | 34.151493 | 2 |
CTGGAGT | 135055 | 0.0 | 32.276115 | 3 |
GTCTTGG | 140110 | 0.0 | 31.925026 | 8 |
TCTTGGA | 144070 | 0.0 | 31.108932 | 9 |
AGAGCGT | 4080 | 0.0 | 29.026003 | 9 |
GTTCGAT | 7430 | 0.0 | 28.840624 | 6 |
GGTTCGA | 7615 | 0.0 | 27.957518 | 5 |
GTGTCTG | 61595 | 0.0 | 27.8935 | 1 |
AAGAGCG | 4380 | 0.0 | 27.360294 | 8 |