FastQCFastQC Report
Thu 29 Mar 2018
GFR-S6.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGFR-S6.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25024279
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT3704171.4802304593870617No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1352350.5404151704031113No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC1323550.5289063473117447Illumina Single End PCR Primer 1 (100% over 50bp)
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT505800.2021237055421257No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC428420.17120173572233588No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC426130.1702866244418071No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC381210.15233605731457836No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG360700.14414001698110862No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA306000.12228124534576999No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA196500.077.50012
AGATCGG203000.074.9124151
ATCGGAA204450.074.1012953
AGAGCGT216650.068.950119
AAGAGCG219250.068.8611458
CGGAAGA244000.062.9781275
TCGGAAG260750.059.271534
GTATACC786100.053.6263494
CGTCTGG100000.046.570941
CGCCGTA174200.040.5994546-47
GTCGCCG187550.038.49730744-45
CGTATCA180100.038.2979650-51
CCGTATC189100.037.70245748-49
GGTCGCC188550.037.04701644-45
TCGCCGT183100.037.00911346-47
GAGCGTC203800.036.8332310-11
TCGTGTA203350.036.7432314-15
GCCGTAT187900.036.74266448-49
GTCGTGT209300.035.55275314-15
TGGTCGC202700.035.31959542-43