FastQCFastQC Report
Thu 29 Mar 2018
GF-S9.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S9.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24742381
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG12903945.215318606564178No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2211860.8939560020517023No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1557190.629361418369558No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC987740.399209760774438No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA822570.3324538572096194No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA820710.3317021106416557No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATG794390.321064492540148TruSeq Adapter, Index 2 (97% over 36bp)
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG752080.3039642789430815No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT631610.2552745428986806No Hit
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG421490.17035143060807284No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA346850.14018456833236867No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG291980.11800804457743981No Hit
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA270800.10944783365836941No Hit
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT270430.10929829267441965No Hit
ATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTC248830.10056833253032518No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT364750.081.048976
CGCGGTG384650.076.8680957
CTCCCTC1635550.075.8002694
GGGCGAT1782400.074.154869
AGGGCGA1798200.073.4487158
GAGGGCG1811900.072.8985447
ATGTGAG1786700.072.343013
TGAGGGC1843850.071.6022346
GTGAGGG1840000.071.590115
CGGGCGC417650.070.454633
GATGTGA1802500.069.304312
GGATGTG1806100.069.1780851
GATCGGA157450.068.2158362
GGGCGCG441200.067.259074
TGTGAGG1959000.067.2361454
AGATCGG159900.067.202441
GCGGTGG440800.067.09788
CCGGGCG435700.066.795052
CGGTGGC444100.066.673019
GGCGCGG467900.063.4817475