Basic Statistics
Measure | Value |
---|---|
Filename | CON-S2.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23787768 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1359325 | 5.714386486365598 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 362433 | 1.523610790217897 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 134892 | 0.5670645518318491 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 97516 | 0.4099417818435088 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 68291 | 0.28708452175925037 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 67467 | 0.2836205565818533 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAAATCTCGTATG | 65568 | 0.27563746207714823 | TruSeq Adapter, Index 13 (97% over 49bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 44743 | 0.18809246836441318 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 40230 | 0.16912053287218876 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 35921 | 0.1510061809918442 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 26815 | 0.11272600270861897 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 42920 | 0.0 | 83.90525 | 6 |
CGCGGTG | 44630 | 0.0 | 80.73817 | 7 |
GGGCGAT | 171185 | 0.0 | 78.402824 | 9 |
GGGCGCG | 46405 | 0.0 | 77.91247 | 4 |
AGGGCGA | 174670 | 0.0 | 76.798935 | 8 |
CTCCCTC | 161120 | 0.0 | 76.12921 | 94 |
GAGGGCG | 176990 | 0.0 | 75.85517 | 7 |
ATGTGAG | 176505 | 0.0 | 74.41729 | 3 |
GTGAGGG | 181175 | 0.0 | 74.128426 | 5 |
TGAGGGC | 181545 | 0.0 | 73.988686 | 6 |
GGCGCGG | 48955 | 0.0 | 73.940384 | 5 |
CCGGGCG | 48510 | 0.0 | 73.30103 | 2 |
GATGTGA | 179945 | 0.0 | 72.913826 | 2 |
CGGGCGC | 49445 | 0.0 | 72.551765 | 3 |
GCGGTGG | 49760 | 0.0 | 72.41524 | 8 |
GGATGTG | 181645 | 0.0 | 72.23474 | 1 |
CGGTGGC | 49960 | 0.0 | 72.12717 | 9 |
TGTGAGG | 192245 | 0.0 | 69.80137 | 4 |
GATCGGA | 12805 | 0.0 | 66.22879 | 2 |
CTATGCC | 56350 | 0.0 | 63.944283 | 94 |