FastQCFastQC Report
Thu 29 Mar 2018
GF-S12.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S12.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20066984
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT2798191.3944247924850093No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1168470.5822848117086254No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT606460.3022178121037023No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC379840.18928604318416759No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA308170.1535706611417042No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA246870.12302297146397287No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC243690.1214382789162537No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG219130.1091992698055672No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATACC523900.059.3815994
CGTCTGG88100.046.1936761
GATCGGA34900.042.4094772
AGATCGG37650.038.8182531
ATCGGAA38250.038.698273
GTCTGGA847550.034.521081
GGAGTCT919500.033.97715
GAGTCTT929150.033.607546
CGTGTCT82650.033.3761141
AGTCTTG936600.033.321317
TGGAGTC940400.032.8742944
TCTGGAG929250.031.2842182
GTCTTGG1011400.031.0257178
CTGGAGT1015700.030.20143
TCTTGGA1049400.029.9110459
AGAGCGT48750.028.1452059
CGTATAC605150.027.00048692-93
CGCCGTA23400.026.60920546-47
GTCCCGT47650.026.3323061
TCGTATA762250.026.17895392-93