Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S4.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28006991 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1043365 | 3.7253734255136512 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 194675 | 0.6950943069892799 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 129002 | 0.4606064250172394 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 91800 | 0.32777530438739383 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 69585 | 0.24845582304789546 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 65161 | 0.2326597669846075 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCATGGCATCTCGTATG | 61098 | 0.21815267480894324 | TruSeq Adapter, Index 12 (97% over 37bp) |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 41691 | 0.14885926160364746 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 40394 | 0.14422827500462296 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 32664 | 0.11662802333888707 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 28268 | 0.1009319423139744 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 32615 | 0.0 | 79.993744 | 6 |
CGCGGTG | 34205 | 0.0 | 76.24781 | 7 |
GGGCGCG | 34135 | 0.0 | 76.20336 | 4 |
GGGCGAT | 141080 | 0.0 | 75.58757 | 9 |
AGGGCGA | 144135 | 0.0 | 73.99525 | 8 |
CGGGCGC | 34955 | 0.0 | 73.81006 | 3 |
GAGGGCG | 146855 | 0.0 | 72.62473 | 7 |
CCGGGCG | 35045 | 0.0 | 72.47002 | 2 |
GGCGCGG | 36505 | 0.0 | 71.489174 | 5 |
CTCCCTC | 140970 | 0.0 | 70.815025 | 94 |
GATCGGA | 18130 | 0.0 | 69.315056 | 2 |
TGAGGGC | 155205 | 0.0 | 68.765976 | 6 |
GTGAGGG | 155205 | 0.0 | 68.68923 | 5 |
ATGTGAG | 152355 | 0.0 | 68.663734 | 3 |
AGATCGG | 18720 | 0.0 | 67.24576 | 1 |
GATGTGA | 151565 | 0.0 | 66.778 | 2 |
TGTGAGG | 161160 | 0.0 | 66.15296 | 4 |
GGATGTG | 154600 | 0.0 | 65.49071 | 1 |
CGGTGGC | 40055 | 0.0 | 65.21745 | 9 |
GCGGTGG | 40050 | 0.0 | 65.14347 | 8 |