Basic Statistics
Measure | Value |
---|---|
Filename | CON-P4.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21968673 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 462371 | 2.1046833370408855 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 202445 | 0.9215167434100366 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 70548 | 0.32113000179847 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 70178 | 0.3194457853690116 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 60844 | 0.2769580119837006 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 57636 | 0.2623554003466664 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 49826 | 0.22680477787620584 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 42237 | 0.1922601333271245 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 40908 | 0.1862106099899616 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 38795 | 0.1765923685968652 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 33454 | 0.15228047684081783 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 31810 | 0.14479709357046738 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 28429 | 0.1294069969542539 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 26997 | 0.12288862417862018 | No Hit |
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 24710 | 0.11247834587004868 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 24524 | 0.11163168571902363 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10625 | 0.0 | 72.433495 | 2 |
ATCGGAA | 10975 | 0.0 | 69.57335 | 3 |
AGATCGG | 11155 | 0.0 | 69.39535 | 1 |
AGAGCGT | 12370 | 0.0 | 60.89666 | 9 |
AAGAGCG | 12720 | 0.0 | 59.739212 | 8 |
GTATACC | 85090 | 0.0 | 58.381542 | 94 |
CGTCTGG | 10935 | 0.0 | 52.986103 | 1 |
CGGAAGA | 14810 | 0.0 | 52.740734 | 5 |
TCGGAAG | 16175 | 0.0 | 49.240604 | 4 |
CGTGTCT | 10435 | 0.0 | 43.446487 | 1 |
CGCCGTA | 9135 | 0.0 | 39.510315 | 46-47 |
CGTATCA | 9505 | 0.0 | 36.890984 | 50-51 |
GTCTGGA | 130330 | 0.0 | 35.47508 | 1 |
GTCGCCG | 10525 | 0.0 | 34.760178 | 44-45 |
CCGTATC | 10435 | 0.0 | 34.61231 | 48-49 |
GCCGTAT | 10180 | 0.0 | 34.486725 | 48-49 |
GGAGTCT | 145875 | 0.0 | 34.29211 | 5 |
GAGTCTT | 146575 | 0.0 | 34.206406 | 6 |
AGTCTTG | 147050 | 0.0 | 33.99327 | 7 |
TGGAGTC | 146025 | 0.0 | 33.968014 | 4 |