Basic Statistics
Measure | Value |
---|---|
Filename | GFR-P3.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19212251 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1148776 | 5.979393044573486 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 255600 | 1.3304011070852655 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 130973 | 0.6817160571137656 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 90408 | 0.4705747390037742 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 66592 | 0.34661216949539125 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG | 60863 | 0.3167926548534058 | TruSeq Adapter, Index 11 (100% over 49bp) |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 54626 | 0.2843289940361491 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 51040 | 0.26566382044456943 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 37161 | 0.19342345673081202 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 35580 | 0.18519433251210385 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 32839 | 0.17092739419238276 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 27509 | 0.14318467940065951 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 24367 | 0.12683053120636412 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 21843 | 0.11369308052450493 | No Hit |
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 19614 | 0.10209110842867918 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 34540 | 0.0 | 82.980774 | 6 |
GGGCGCG | 35895 | 0.0 | 79.95685 | 4 |
CGCGGTG | 36030 | 0.0 | 79.58434 | 7 |
CGGGCGC | 36555 | 0.0 | 77.947365 | 3 |
CCGGGCG | 36455 | 0.0 | 77.43923 | 2 |
GGGCGAT | 145060 | 0.0 | 76.84472 | 9 |
CTCCCTC | 134230 | 0.0 | 76.16053 | 94 |
AGGGCGA | 147420 | 0.0 | 75.616745 | 8 |
GGCGCGG | 38240 | 0.0 | 75.06594 | 5 |
GAGGGCG | 149865 | 0.0 | 74.4703 | 7 |
ATGTGAG | 150260 | 0.0 | 72.726074 | 3 |
GTGAGGG | 154165 | 0.0 | 72.33849 | 5 |
TGAGGGC | 154370 | 0.0 | 72.30909 | 6 |
GATGTGA | 153080 | 0.0 | 71.27903 | 2 |
GCGGTGG | 40515 | 0.0 | 70.87932 | 8 |
TGTGAGG | 157815 | 0.0 | 70.67436 | 4 |
CGGTGGC | 40650 | 0.0 | 70.61016 | 9 |
GGATGTG | 155120 | 0.0 | 70.374466 | 1 |
GCCGGGC | 40325 | 0.0 | 69.96694 | 1 |
GATCGGA | 10485 | 0.0 | 65.955246 | 2 |