Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S4.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28006991 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 405222 | 1.4468601785889816 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 146943 | 0.5246654308561745 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 89662 | 0.3201414961000273 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 55550 | 0.19834333506230642 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 55144 | 0.19689369700586543 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 48621 | 0.17360308360151935 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 45651 | 0.16299858845957427 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 38139 | 0.1361767138783313 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 37752 | 0.13479491602650212 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 34084 | 0.12169818599934566 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 14765 | 0.0 | 72.422615 | 2 |
ATCGGAA | 15340 | 0.0 | 69.2257 | 3 |
AGATCGG | 15560 | 0.0 | 68.97426 | 1 |
AGAGCGT | 16790 | 0.0 | 62.381973 | 9 |
AAGAGCG | 17170 | 0.0 | 61.71269 | 8 |
CGGAAGA | 20035 | 0.0 | 54.391632 | 5 |
GTATACC | 83920 | 0.0 | 53.83445 | 94 |
TCGGAAG | 21315 | 0.0 | 51.627228 | 4 |
CGTCTGG | 12460 | 0.0 | 48.573383 | 1 |
CGCCGTA | 12695 | 0.0 | 38.443077 | 46-47 |
CGTATCA | 12995 | 0.0 | 36.168278 | 50-51 |
GTCGCCG | 13925 | 0.0 | 35.923943 | 44-45 |
GTCTGGA | 116305 | 0.0 | 35.59006 | 1 |
GGAGTCT | 130705 | 0.0 | 34.679733 | 5 |
GAGTCTT | 131410 | 0.0 | 34.463905 | 6 |
CCGTATC | 14260 | 0.0 | 34.160606 | 48-49 |
AGTCTTG | 132535 | 0.0 | 34.12673 | 7 |
TCGCCGT | 13735 | 0.0 | 33.99254 | 46-47 |
GCCGTAT | 13900 | 0.0 | 33.878853 | 48-49 |
TGGAGTC | 132595 | 0.0 | 33.802822 | 4 |