Basic Statistics
Measure | Value |
---|---|
Filename | CON-S5.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24212986 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 380100 | 1.5698187741074148 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 178192 | 0.73593566691857 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 96075 | 0.3967912094774267 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63114 | 0.26066177876615465 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 47501 | 0.1961798515887301 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 45858 | 0.18939423662988117 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 43809 | 0.18093183550347736 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 40685 | 0.168029668046725 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 37435 | 0.15460711867590393 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 35288 | 0.14573997606077996 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 34417 | 0.1421427328293999 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 30272 | 0.1250238198626142 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 25297 | 0.10447699428728038 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 14450 | 0.0 | 74.55267 | 2 |
ATCGGAA | 14730 | 0.0 | 72.66415 | 3 |
AGATCGG | 14985 | 0.0 | 72.1115 | 1 |
AGAGCGT | 16505 | 0.0 | 64.0337 | 9 |
AAGAGCG | 16685 | 0.0 | 63.963055 | 8 |
CGGAAGA | 19590 | 0.0 | 55.726765 | 5 |
TCGGAAG | 20475 | 0.0 | 53.446278 | 4 |
GTATACC | 81630 | 0.0 | 51.77298 | 94 |
CGTCTGG | 12480 | 0.0 | 51.619907 | 1 |
CGCCGTA | 12435 | 0.0 | 40.022953 | 46-47 |
CGTGTCT | 11395 | 0.0 | 39.863373 | 1 |
CGTATCA | 12905 | 0.0 | 37.84312 | 50-51 |
GTCGCCG | 13555 | 0.0 | 37.00997 | 44-45 |
TCGCCGT | 13315 | 0.0 | 36.24835 | 46-47 |
GCCGTAT | 13545 | 0.0 | 36.13813 | 48-49 |
CCGTATC | 13900 | 0.0 | 36.026665 | 48-49 |
TCGTGTA | 15035 | 0.0 | 34.78758 | 14-15 |
GGTCGCC | 14270 | 0.0 | 34.282867 | 44-45 |
GAGCGTC | 15705 | 0.0 | 33.69244 | 10-11 |
TGGTCGC | 15135 | 0.0 | 33.23903 | 42-43 |