FastQCFastQC Report
Thu 29 Mar 2018
GFR-S9.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGFR-S9.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24320429
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT4274311.757497780980755No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1734630.7132398856944505No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC638300.26245425193774335No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA624770.2568910277034998No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC612130.25169375096138313Illumina Single End PCR Primer 1 (100% over 50bp)
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC523800.21537449031018324No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC486300.19995535440596054No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT459440.18891114132896258No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA456000.18749669259534854No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG430130.1768595447062221No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT350300.1440352881933127No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA332730.13681090905098753No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG328940.13525254838226744No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG299660.12321328706825033No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG243390.10007635967276729No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA102800.068.738632
AGATCGG107400.066.018951
ATCGGAA108150.065.04073
AGAGCGT123850.056.2275629
AAGAGCG126550.055.807678
GTATACC917450.053.8780294
CGTCTGG127000.052.722361
CGGAAGA149400.048.7220545
TCGGAAG170300.042.7938844
CGTGTCT116950.041.784651
CGCCGTA90350.036.85116246-47
CGTATCA92100.035.23939550-51
GTCTGGA1314000.033.6422961
GTCGCCG100650.033.5458744-45
GGTCGCC100300.032.74932544-45
GGAGTCT1518950.032.6387675
GAGTCTT1530700.032.4422846
AGTCTTG1537800.032.199367
TGGAGTC1522550.032.1573834
GCCGTAT100700.032.10958548-49