Basic Statistics
Measure | Value |
---|---|
Filename | CON-S2.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23787768 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 537928 | 2.2613639077024796 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 237867 | 0.9999551029756134 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 75699 | 0.31822657762594625 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 69089 | 0.29043918706454513 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 63388 | 0.266473088185491 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 51896 | 0.2181625447162592 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 48139 | 0.2023687131974719 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 44920 | 0.18883654826295598 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 44508 | 0.18710456567425746 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 36024 | 0.15143917663901885 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 35995 | 0.15131726524321237 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 34542 | 0.1452090839291858 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 33317 | 0.140059378416672 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 31258 | 0.13140366931441405 | No Hit |
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 25450 | 0.10698775942324644 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 24856 | 0.10449067772983157 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10105 | 0.0 | 68.86282 | 2 |
AGATCGG | 10525 | 0.0 | 66.04108 | 1 |
ATCGGAA | 10515 | 0.0 | 65.60304 | 3 |
GTATACC | 93085 | 0.0 | 61.371597 | 94 |
AGAGCGT | 11665 | 0.0 | 58.092697 | 9 |
CGTCTGG | 12765 | 0.0 | 54.820618 | 1 |
CGGAAGA | 14525 | 0.0 | 48.567093 | 5 |
AAGAGCG | 14720 | 0.0 | 46.706326 | 8 |
TCGGAAG | 15935 | 0.0 | 44.58686 | 4 |
CGTGTCT | 11160 | 0.0 | 41.550335 | 1 |
CGCCGTA | 8450 | 0.0 | 38.457947 | 46-47 |
GTCTGGA | 145920 | 0.0 | 36.85065 | 1 |
CGTATCA | 8870 | 0.0 | 35.662586 | 50-51 |
GGAGTCT | 162355 | 0.0 | 35.567863 | 5 |
GAGTCTT | 163620 | 0.0 | 35.32472 | 6 |
TGGAGTC | 162875 | 0.0 | 35.162945 | 4 |
AGTCTTG | 164155 | 0.0 | 35.15784 | 7 |
TCTGGAG | 155910 | 0.0 | 34.626785 | 2 |
GTCTTGG | 176785 | 0.0 | 32.741512 | 8 |
CTGGAGT | 173850 | 0.0 | 32.635006 | 3 |