Basic Statistics
Measure | Value |
---|---|
Filename | GF-S11.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30526754 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1264244 | 4.14142951458252 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 219316 | 0.7184386522065201 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 147544 | 0.4833268548631145 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 96172 | 0.3150416844188544 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 82225 | 0.2693538919991297 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 81583 | 0.267250818740833 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 77625 | 0.25428514279638115 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 41390 | 0.13558598467429586 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 40399 | 0.13233965196561678 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 39170 | 0.12831367527644766 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCACGATATCTCGTATG | 35465 | 0.11617678053814696 | TruSeq Adapter, Index 7 (97% over 35bp) |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 35276 | 0.11555765149481666 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 33445 | 0.10955963414911393 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 36525 | 0.0 | 82.29009 | 6 |
GGGCGCG | 38420 | 0.0 | 78.09085 | 4 |
CGCGGTG | 38885 | 0.0 | 77.41712 | 7 |
GGGCGAT | 170865 | 0.0 | 76.64493 | 9 |
AGGGCGA | 174625 | 0.0 | 74.949 | 8 |
GAGGGCG | 178215 | 0.0 | 73.48416 | 7 |
CGGGCGC | 40625 | 0.0 | 73.261444 | 3 |
CCGGGCG | 40725 | 0.0 | 72.0337 | 2 |
GGCGCGG | 42210 | 0.0 | 71.32506 | 5 |
ATGTGAG | 179925 | 0.0 | 71.13722 | 3 |
CTCCCTC | 173335 | 0.0 | 71.06622 | 94 |
GTGAGGG | 185425 | 0.0 | 70.487045 | 5 |
TGAGGGC | 185895 | 0.0 | 70.40482 | 6 |
GATGTGA | 181275 | 0.0 | 68.29561 | 2 |
TGTGAGG | 192835 | 0.0 | 67.836365 | 4 |
GGATGTG | 184510 | 0.0 | 67.145294 | 1 |
CGGTGGC | 46290 | 0.0 | 65.10357 | 9 |
GCGGTGG | 46360 | 0.0 | 65.05606 | 8 |
GCCGGGC | 48925 | 0.0 | 59.962433 | 1 |
CTATGCC | 53620 | 0.0 | 56.230106 | 94 |