Basic Statistics
Measure | Value |
---|---|
Filename | GF-P2.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19781093 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1093862 | 5.529835990357054 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 331532 | 1.6760044553655353 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 146344 | 0.7398175621539214 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 80283 | 0.40585724964742853 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 71377 | 0.36083445945074927 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 52781 | 0.26682549846967507 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATG | 50533 | 0.255461111274286 | TruSeq Adapter, Index 6 (100% over 49bp) |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 49408 | 0.2497738623442092 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 36789 | 0.18598062301208532 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 27887 | 0.14097805414493525 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 26076 | 0.13182284720060716 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 20109 | 0.10165767887547973 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 39195 | 0.0 | 83.07439 | 6 |
GGGCGCG | 40575 | 0.0 | 80.24202 | 4 |
CGCGGTG | 40660 | 0.0 | 80.162315 | 7 |
CGGGCGC | 40785 | 0.0 | 79.010315 | 3 |
CCGGGCG | 40875 | 0.0 | 77.8473 | 2 |
GGCGCGG | 42655 | 0.0 | 76.50548 | 5 |
CTCCCTC | 131205 | 0.0 | 75.18338 | 94 |
GGGCGAT | 144155 | 0.0 | 74.99052 | 9 |
AGGGCGA | 146560 | 0.0 | 73.770355 | 8 |
GAGGGCG | 149415 | 0.0 | 72.3876 | 7 |
CGGTGGC | 45400 | 0.0 | 71.88992 | 9 |
GCGGTGG | 45385 | 0.0 | 71.88026 | 8 |
GCCGGGC | 44400 | 0.0 | 71.494865 | 1 |
ATGTGAG | 149870 | 0.0 | 70.76218 | 3 |
GTGAGGG | 153975 | 0.0 | 70.27104 | 5 |
TGAGGGC | 154050 | 0.0 | 70.19308 | 6 |
GATGTGA | 152940 | 0.0 | 69.30179 | 2 |
TGTGAGG | 157360 | 0.0 | 68.65487 | 4 |
CTATGCC | 47475 | 0.0 | 68.59063 | 94 |
GGATGTG | 155275 | 0.0 | 68.28078 | 1 |