FastQCFastQC Report
Thu 29 Mar 2018
GF-S8.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S8.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26439947
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT4976321.8821217758114268No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC2191370.8288102846802228No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT989010.37405899489889294No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC618290.2338469135357949No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA456160.17252682087448964No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC431870.16333996433502684No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA418420.158252964727955No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT364480.13785201611788406No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG356590.13486789515879136No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA303200.1146749651200133No Hit
GGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATT269150.10179672447906192No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATACC845450.063.57338394
CGTCTGG132950.050.5816541
GATCGGA51500.050.5444682
ATCGGAA58350.044.775323
AGATCGG59400.043.8293531
GTCTGGA1369350.036.9746671
CGTGTCT124650.036.381181
GGAGTCT1491600.036.108165
GAGTCTT1508500.035.7457546
AGTCTTG1516550.035.501317
TGGAGTC1511600.035.3475344
AGAGCGT71650.035.0854879
CGTTCGA34100.034.8623058
TCTGGAG1478700.034.3237842
ACGTTCG34750.033.9429137
GTCTTGG1620350.033.40098
CTGGAGT1590700.033.324533
TCTTGGA1671800.032.356129
GTGTCTG761300.030.030931
AAGAGCG86750.029.5742058