Basic Statistics
Measure | Value |
---|---|
Filename | GF-S9.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24742381 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 475821 | 1.9231010952422083 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 185878 | 0.7512534868814768 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 81525 | 0.32949537071634294 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 72931 | 0.2947614459578486 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 66176 | 0.2674601122664791 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 55690 | 0.22507938908547243 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 44254 | 0.17885910010035008 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 40133 | 0.162203467806918 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 39561 | 0.15989164502801895 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 39142 | 0.1581981944259932 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 37311 | 0.1507979365445872 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 29677 | 0.11994399407235708 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 29050 | 0.11740988064164075 | No Hit |
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 24890 | 0.10059662406782921 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 12840 | 0.0 | 74.68284 | 2 |
AGATCGG | 13425 | 0.0 | 71.92617 | 1 |
ATCGGAA | 13515 | 0.0 | 70.78732 | 3 |
AGAGCGT | 14950 | 0.0 | 63.206287 | 9 |
CGGAAGA | 17655 | 0.0 | 54.85712 | 5 |
GTATACC | 98500 | 0.0 | 53.66029 | 94 |
CGTCTGG | 12715 | 0.0 | 53.104313 | 1 |
TCGGAAG | 19495 | 0.0 | 50.3987 | 4 |
AAGAGCG | 19060 | 0.0 | 49.921745 | 8 |
CGCCGTA | 11200 | 0.0 | 39.565998 | 46-47 |
CGTGTCT | 10880 | 0.0 | 38.307526 | 1 |
GTCTGGA | 130070 | 0.0 | 37.295826 | 1 |
CGTATCA | 11685 | 0.0 | 36.885605 | 50-51 |
GGAGTCT | 146180 | 0.0 | 36.129547 | 5 |
GAGTCTT | 147510 | 0.0 | 35.86598 | 6 |
TGGAGTC | 146460 | 0.0 | 35.8138 | 4 |
AGTCTTG | 149260 | 0.0 | 35.367905 | 7 |
TCTGGAG | 140055 | 0.0 | 34.740517 | 2 |
GGTCGCC | 12735 | 0.0 | 34.112816 | 44-45 |
CTGGAGT | 156170 | 0.0 | 33.21737 | 3 |