Basic Statistics
Measure | Value |
---|---|
Filename | GF-S3.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21067081 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 336247 | 1.5960777860017723 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 144451 | 0.6856716409833902 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 55830 | 0.2650106106299207 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 51502 | 0.24446671088415145 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 46321 | 0.21987384013950487 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 37293 | 0.17702025259218399 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 36957 | 0.17542534725147732 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 35104 | 0.16662963416716345 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 29551 | 0.14027097536673447 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 26147 | 0.12411306530790858 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 23101 | 0.10965448891566895 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 21961 | 0.10424320293827133 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 7775 | 0.0 | 68.59108 | 2 |
AGATCGG | 8360 | 0.0 | 63.690437 | 1 |
ATCGGAA | 8460 | 0.0 | 62.489346 | 3 |
GTATACC | 68725 | 0.0 | 55.174347 | 94 |
AGAGCGT | 9620 | 0.0 | 54.462017 | 9 |
CGTCTGG | 10645 | 0.0 | 52.44709 | 1 |
AAGAGCG | 10150 | 0.0 | 52.22013 | 8 |
CGGAAGA | 11915 | 0.0 | 45.79126 | 5 |
TCGGAAG | 13475 | 0.0 | 40.627003 | 4 |
CGTGTCT | 9960 | 0.0 | 39.63424 | 1 |
CGCCGTA | 6620 | 0.0 | 37.374687 | 46-47 |
CGTATCA | 6860 | 0.0 | 35.079693 | 50-51 |
GTCGCCG | 7590 | 0.0 | 33.618572 | 44-45 |
GTCTGGA | 103825 | 0.0 | 33.001656 | 1 |
GAGTCTT | 116740 | 0.0 | 32.69408 | 6 |
GGAGTCT | 116490 | 0.0 | 32.676895 | 5 |
AGTCTTG | 117690 | 0.0 | 32.398693 | 7 |
TGGAGTC | 118750 | 0.0 | 31.73645 | 4 |
TCGCCGT | 7560 | 0.0 | 31.670841 | 46-47 |
CCGTATC | 7840 | 0.0 | 31.5911 | 48-49 |