FastQCFastQC Report
Thu 29 Mar 2018
CON-S2.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S2.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23787768
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG13593255.714386486365598No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG3624331.523610790217897No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1348920.5670645518318491No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA975160.4099417818435088No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC682910.28708452175925037No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA674670.2836205565818533No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAAATCTCGTATG655680.27563746207714823TruSeq Adapter, Index 13 (97% over 49bp)
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT447430.18809246836441318No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG402300.16912053287218876No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA359210.1510061809918442No Hit
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT268150.11272600270861897No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT429200.083.905256
CGCGGTG446300.080.738177
GGGCGAT1711850.078.4028249
GGGCGCG464050.077.912474
AGGGCGA1746700.076.7989358
CTCCCTC1611200.076.1292194
GAGGGCG1769900.075.855177
ATGTGAG1765050.074.417293
GTGAGGG1811750.074.1284265
TGAGGGC1815450.073.9886866
GGCGCGG489550.073.9403845
CCGGGCG485100.073.301032
GATGTGA1799450.072.9138262
CGGGCGC494450.072.5517653
GCGGTGG497600.072.415248
GGATGTG1816450.072.234741
CGGTGGC499600.072.127179
TGTGAGG1922450.069.801374
GATCGGA128050.066.228792
CTATGCC563500.063.94428394