Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S3.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21092959 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1057266 | 5.012411961735667 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 368045 | 1.744871357309328 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 133678 | 0.6337565061402717 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 127747 | 0.6056381183882261 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 73001 | 0.34609179300068804 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 59018 | 0.27979952931212737 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 57143 | 0.2709103070839895 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGGCGATCTCGTATG | 46781 | 0.22178490936240855 | TruSeq Adapter, Index 7 (97% over 36bp) |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 34058 | 0.16146620301115647 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 33431 | 0.15849364709806718 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 29835 | 0.14144530409412923 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 24499 | 0.11614776286247937 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 44925 | 0.0 | 83.82788 | 6 |
GGGCGCG | 45950 | 0.0 | 82.08397 | 4 |
CGCGGTG | 46480 | 0.0 | 81.02359 | 7 |
CCGGGCG | 46185 | 0.0 | 79.216965 | 2 |
GGCGCGG | 48215 | 0.0 | 78.326225 | 5 |
CGGGCGC | 47890 | 0.0 | 77.96287 | 3 |
GGGCGAT | 143480 | 0.0 | 75.36546 | 9 |
CTCCCTC | 136245 | 0.0 | 74.64743 | 94 |
AGGGCGA | 146065 | 0.0 | 74.002716 | 8 |
GCGGTGG | 50990 | 0.0 | 73.94932 | 8 |
CGGTGGC | 51210 | 0.0 | 73.530685 | 9 |
GAGGGCG | 147750 | 0.0 | 73.17784 | 7 |
GCCGGGC | 50480 | 0.0 | 72.32657 | 1 |
ATGTGAG | 149400 | 0.0 | 71.27573 | 3 |
GTGAGGG | 152655 | 0.0 | 70.699844 | 5 |
TGAGGGC | 152960 | 0.0 | 70.63907 | 6 |
GATGTGA | 149370 | 0.0 | 68.980095 | 2 |
TGTGAGG | 157245 | 0.0 | 68.70427 | 4 |
GGATGTG | 151155 | 0.0 | 68.19638 | 1 |
ACTAATC | 18485 | 0.0 | 67.84131 | 1 |