Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S9.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24320429 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1172272 | 4.820112342590667 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 195792 | 0.8050515885225545 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 164144 | 0.6749223050300633 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 156699 | 0.6443101805482132 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 115391 | 0.4744612029664444 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 102861 | 0.4229407301984681 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATG | 57204 | 0.2352096667373754 | TruSeq Adapter, Index 4 (100% over 49bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 48669 | 0.20011571341936443 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 45048 | 0.18522699579024696 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 42397 | 0.1743266946483551 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 39227 | 0.1612923850973188 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 34487 | 0.14180259731438125 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 25487 | 0.10479667114424668 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 24679 | 0.10147436132808348 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 38625 | 0.0 | 82.37891 | 6 |
GGGCGCG | 40430 | 0.0 | 78.53047 | 4 |
CGCGGTG | 40595 | 0.0 | 78.42767 | 7 |
CGGGCGC | 40720 | 0.0 | 77.2894 | 3 |
CCGGGCG | 40520 | 0.0 | 76.35175 | 2 |
CTCCCTC | 149610 | 0.0 | 75.015526 | 94 |
GGCGCGG | 42940 | 0.0 | 74.11628 | 5 |
GGGCGAT | 166820 | 0.0 | 71.576614 | 9 |
AGGGCGA | 169730 | 0.0 | 70.33574 | 8 |
GAGGGCG | 172495 | 0.0 | 69.205574 | 7 |
GCGGTGG | 46440 | 0.0 | 68.65785 | 8 |
CGGTGGC | 46500 | 0.0 | 68.56912 | 9 |
GCCGGGC | 45295 | 0.0 | 68.25886 | 1 |
ATGTGAG | 173530 | 0.0 | 67.41948 | 3 |
GTGAGGG | 178480 | 0.0 | 66.7499 | 5 |
TGAGGGC | 179240 | 0.0 | 66.59067 | 6 |
TGTGAGG | 182855 | 0.0 | 65.15461 | 4 |
GATGTGA | 173660 | 0.0 | 64.98887 | 2 |
GGATGTG | 176365 | 0.0 | 64.050224 | 1 |
GATCGGA | 13525 | 0.0 | 63.86487 | 2 |