Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S8.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26113252 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 468949 | 1.795827651033276 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 176175 | 0.6746574497883298 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 65885 | 0.25230484506487355 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 54589 | 0.20904711523482408 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 53847 | 0.2062056460834522 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 42874 | 0.16418483611309692 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 42295 | 0.16196757110144688 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 40923 | 0.1567135338026838 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 39152 | 0.14993153667723957 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 38991 | 0.1493149914840174 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 29523 | 0.11305753875465224 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 28907 | 0.1106985832327586 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 28903 | 0.11068326533975928 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 28375 | 0.10866130346385047 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 7820 | 0.0 | 64.34571 | 2 |
ATCGGAA | 8360 | 0.0 | 59.633926 | 3 |
AGATCGG | 8490 | 0.0 | 58.88729 | 1 |
GTATACC | 91165 | 0.0 | 57.10282 | 94 |
CGTCTGG | 12900 | 0.0 | 53.326 | 1 |
AGAGCGT | 9515 | 0.0 | 51.163498 | 9 |
AAGAGCG | 10290 | 0.0 | 48.269066 | 8 |
CGGAAGA | 12880 | 0.0 | 40.388184 | 5 |
GTCTGGA | 130670 | 0.0 | 36.664146 | 1 |
CGTGTCT | 11625 | 0.0 | 36.620384 | 1 |
TCGGAAG | 14625 | 0.0 | 35.340576 | 4 |
GGAGTCT | 147380 | 0.0 | 35.331573 | 5 |
GAGTCTT | 148790 | 0.0 | 34.97929 | 6 |
CGCCGTA | 6415 | 0.0 | 34.79795 | 46-47 |
AGTCTTG | 149575 | 0.0 | 34.7818 | 7 |
TGGAGTC | 148605 | 0.0 | 34.717285 | 4 |
TCTGGAG | 141660 | 0.0 | 33.925232 | 2 |
CGTATCA | 6615 | 0.0 | 32.79047 | 50-51 |
CTGGAGT | 156255 | 0.0 | 32.65128 | 3 |
GTCTTGG | 161740 | 0.0 | 32.315716 | 8 |