Basic Statistics
Measure | Value |
---|---|
Filename | CON-P2.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19996544 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1416490 | 7.0836740588773734 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 316732 | 1.583933703744007 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 138969 | 0.6949650899675465 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 129313 | 0.6466767457416642 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 76347 | 0.381800975208516 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 63313 | 0.3166197118862139 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 45763 | 0.22885454606556013 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 39827 | 0.1991694164751669 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 36772 | 0.18389177649897903 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 32880 | 0.16442841322980611 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG | 32627 | 0.1631631946000269 | TruSeq Adapter, Index 2 (100% over 49bp) |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 28832 | 0.1441849151533385 | No Hit |
ACGAGCTTGGTGATAGCTGGTTACCCAAAAAATGAATTTAAGTTCAATTT | 26556 | 0.1328029483494748 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 25209 | 0.126066784340334 | No Hit |
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 24658 | 0.12331130819405592 | No Hit |
GGACAGCTCTTCTGGAACGGAAAAAACCTTTAATAGTGAATAATTAACAA | 24123 | 0.12063584587416705 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 21855 | 0.10929388598349796 | No Hit |
ACAAAATCAAAAAGTAAGTTTAGATTATAGCCAAAAGAGGGACAGCTCTT | 21823 | 0.10913385833071956 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 41890 | 0.0 | 84.002785 | 6 |
CGCGGTG | 43445 | 0.0 | 80.99224 | 7 |
GGGCGCG | 43495 | 0.0 | 80.95009 | 4 |
GGGCGAT | 173855 | 0.0 | 78.71724 | 9 |
CCGGGCG | 44230 | 0.0 | 78.70169 | 2 |
AGGGCGA | 176260 | 0.0 | 77.64676 | 8 |
GGCGCGG | 45680 | 0.0 | 77.19122 | 5 |
CGGGCGC | 45345 | 0.0 | 77.12913 | 3 |
GAGGGCG | 178275 | 0.0 | 76.8045 | 7 |
CTCCCTC | 163710 | 0.0 | 76.75011 | 94 |
ATGTGAG | 177425 | 0.0 | 75.547165 | 3 |
GTGAGGG | 182870 | 0.0 | 74.86836 | 5 |
TGAGGGC | 182885 | 0.0 | 74.84838 | 6 |
GATGTGA | 181245 | 0.0 | 73.87469 | 2 |
GCGGTGG | 47665 | 0.0 | 73.763954 | 8 |
GGATGTG | 182830 | 0.0 | 73.27824 | 1 |
CGGTGGC | 48175 | 0.0 | 73.06274 | 9 |
TGTGAGG | 188000 | 0.0 | 72.732895 | 4 |
GCCGGGC | 49290 | 0.0 | 70.628784 | 1 |
ACTAATC | 18725 | 0.0 | 68.45326 | 1 |