FastQCFastQC Report
Thu 29 Mar 2018
GF-S2.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S2.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30963933
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT6544552.1136042375495387No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC3009340.9718855805559325No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA890910.28772507678530373No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT816280.26362284145234394No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC685480.22138014573277887No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC633630.20463485694792066No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA552140.17831714078440875No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG493510.15938220768014194No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT469930.15176689602060567No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA444890.14368006803270114No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC368660.11906110247687203Illumina Single End PCR Primer 1 (100% over 50bp)
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG355900.1149401789494894No Hit
GGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATT352680.11390025937596494No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG324000.10463787013103276No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC311410.10057184918982999No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATACC1130500.063.32040494
GATCGGA80550.052.9052
AGATCGG87500.048.979071
ATCGGAA87650.048.1422543
CGTCTGG155650.046.493831
AGAGCGT99100.042.294319
CGTGTCT153500.040.3794251
GTCTGGA1875650.035.8794061
GGAGTCT2057500.034.9883465
AAGAGCG121450.034.975268
GAGTCTT2078150.034.668346
AGTCTTG2082250.034.5670057
TGGAGTC2084700.034.2786874
CGTTCGA35200.033.5058868
TCTGGAG2019800.033.4577032
GTCTTGG2214100.032.6611488
CGCCGTA61800.032.5452446-47
CTGGAGT2188250.032.360733
CGGAAGA138950.031.9599515
TCTTGGA2279200.031.763369