Basic Statistics
Measure | Value |
---|---|
Filename | GF-P4.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25345776 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 364631 | 1.438626302071004 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 163975 | 0.6469519812689893 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 82787 | 0.32663036239253435 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 60349 | 0.23810279077665641 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 48263 | 0.1904183166457401 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 45469 | 0.17939478357261582 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 36709 | 0.1448328115895919 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 32397 | 0.12782011487831346 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 31156 | 0.12292383551405174 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 26871 | 0.10601766542874837 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 26124 | 0.10307042877677132 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 25631 | 0.10112533149507831 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10120 | 0.0 | 68.57487 | 2 |
AGATCGG | 10585 | 0.0 | 65.22364 | 1 |
ATCGGAA | 10705 | 0.0 | 64.13049 | 3 |
GTATACC | 68565 | 0.0 | 58.324467 | 94 |
AGAGCGT | 11755 | 0.0 | 56.408203 | 9 |
AAGAGCG | 12600 | 0.0 | 53.856586 | 8 |
CGTCTGG | 10410 | 0.0 | 47.978165 | 1 |
CGGAAGA | 14865 | 0.0 | 47.07524 | 5 |
TCGGAAG | 15700 | 0.0 | 44.98424 | 4 |
CGCCGTA | 8370 | 0.0 | 37.955597 | 46-47 |
CGTATCA | 8905 | 0.0 | 34.836742 | 50-51 |
GTCTGGA | 111395 | 0.0 | 33.842453 | 1 |
GGAGTCT | 122320 | 0.0 | 33.122486 | 5 |
GAGTCTT | 123020 | 0.0 | 32.952053 | 6 |
AGTCTTG | 124400 | 0.0 | 32.476776 | 7 |
GTCGCCG | 9840 | 0.0 | 32.45205 | 44-45 |
GGTCGCC | 9615 | 0.0 | 32.160618 | 44-45 |
TGGAGTC | 124640 | 0.0 | 32.135643 | 4 |
CGTGTCT | 10130 | 0.0 | 32.080303 | 1 |
TCGCCGT | 9735 | 0.0 | 31.402626 | 46-47 |