Basic Statistics
Measure | Value |
---|---|
Filename | GF-S3.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21067081 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 924894 | 4.390233274367721 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 287833 | 1.3662690146774485 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 132293 | 0.627960750708653 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 95732 | 0.45441511332300855 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 71462 | 0.3392116829094643 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 44113 | 0.20939303361486103 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATG | 43249 | 0.20529184845304388 | TruSeq Adapter, Index 7 (97% over 36bp) |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 34218 | 0.1624240206794667 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 32579 | 0.15464411040143625 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 29855 | 0.14171398496070717 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 25131 | 0.11929037534910507 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 24627 | 0.11689801733804508 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 23851 | 0.11321454547974634 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 35460 | 0.0 | 82.66685 | 6 |
GGGCGCG | 36250 | 0.0 | 80.958855 | 4 |
CGCGGTG | 36865 | 0.0 | 79.592735 | 7 |
CGGGCGC | 37135 | 0.0 | 78.408676 | 3 |
CCGGGCG | 36795 | 0.0 | 78.038414 | 2 |
GGCGCGG | 38170 | 0.0 | 76.89995 | 5 |
GGGCGAT | 127425 | 0.0 | 73.94806 | 9 |
CTCCCTC | 121155 | 0.0 | 73.36708 | 94 |
AGGGCGA | 130005 | 0.0 | 72.49498 | 8 |
GCCGGGC | 40070 | 0.0 | 71.63978 | 1 |
GAGGGCG | 131900 | 0.0 | 71.42869 | 7 |
GCGGTGG | 41325 | 0.0 | 71.150345 | 8 |
CGGTGGC | 41355 | 0.0 | 71.053276 | 9 |
ATGTGAG | 134125 | 0.0 | 68.73958 | 3 |
GTGAGGG | 137385 | 0.0 | 68.51346 | 5 |
TGAGGGC | 138280 | 0.0 | 68.19766 | 6 |
GATGTGA | 134190 | 0.0 | 66.43503 | 2 |
TGTGAGG | 141715 | 0.0 | 66.399216 | 4 |
GGATGTG | 135980 | 0.0 | 65.63018 | 1 |
CTATGCC | 46465 | 0.0 | 63.2915 | 94 |