FastQCFastQC Report
Thu 29 Mar 2018
CON-S5.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S5.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24212986
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG10870254.489429763020554No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2730821.1278328083946358No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1985210.8198947457368537No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1074000.44356363151574946No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAATCTCGTATG962590.3975511322725747TruSeq Adapter, Index 15 (97% over 49bp)
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC827370.3417050668595769No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG402850.16637766197031625No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA366650.15142700697881709No Hit
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA348290.1438442990881009No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT329660.13615008078722715No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT336000.079.211536
CGCGGTG352800.075.4971857
GGGCGCG353400.075.3817144
CGGGCGC358950.073.652743
CCGGGCG362850.072.097032
CTCCCTC1365750.071.1433194
GATCGGA178700.070.973582
AGATCGG180850.070.1164861
GGCGCGG382450.069.9017265
GGGCGAT1520650.069.5522469
AGGGCGA1553050.068.120728
GAGGGCG1587100.066.67977
CGGTGGC408000.065.388429
GCGGTGG409450.065.1322868
ATGTGAG1597450.064.845983
TGAGGGC1647400.064.2808156
GTGAGGG1649250.064.2295
GATGTGA1637000.063.2766842
GCCGGGC414900.062.955811
TGTGAGG1695150.062.3900224