FastQCFastQC Report
Thu 29 Mar 2018
GFR-S10.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGFR-S10.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20111009
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG5794612.88131241948129No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG985090.4898262439244097No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA775200.3854605206531408No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC749940.37290023588572807No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG459170.22831773383423976TruSeq Adapter, Index 5 (100% over 49bp)
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA414700.2062054668664312No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT345910.17200032081930847No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA309040.15366707856378564No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG272050.13527416749701618No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT140650.074.639496
GGGCGAT825950.072.790659
GGGCGCG146100.072.09654
AGGGCGA846650.071.044638
GAGGGCG863250.069.569777
CGGGCGC153100.068.12413
CGCGGTG154500.067.918267
CCGGGCG154500.066.263642
GGCGCGG161450.065.067525
ATGTGAG904800.064.9879763
TGAGGGC929600.064.7102366
GTGAGGG927100.064.693865
AGATCGG105650.064.386721
GATCGGA106100.064.298012
CTCCCTC898150.063.3564294
GATGTGA899400.063.1653862
TGTGAGG957850.062.631254
GGATGTG909500.062.386471
GCCGGGC179250.056.9637151
GCGGTGG193800.054.314968