Basic Statistics
Measure | Value |
---|---|
Filename | GF-S4.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20971509 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 243523 | 1.1612087618492308 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 103342 | 0.49277331450016304 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 79648 | 0.379791458974173 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 41685 | 0.19876967365581563 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 32189 | 0.15348919336228975 | No Hit |
TCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTC | 24435 | 0.116515220721599 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 23829 | 0.11362558602721436 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 22302 | 0.106344278802255 | No Hit |
CGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCA | 21935 | 0.10459428551374153 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8085 | 0.0 | 62.937286 | 2 |
ATCGGAA | 8450 | 0.0 | 60.169403 | 3 |
AGATCGG | 8405 | 0.0 | 60.048584 | 1 |
GTATACC | 46180 | 0.0 | 58.75744 | 94 |
AGAGCGT | 9065 | 0.0 | 54.841396 | 9 |
AAGAGCG | 11130 | 0.0 | 45.426342 | 8 |
CGGAAGA | 11500 | 0.0 | 45.358673 | 5 |
CGTCTGG | 7945 | 0.0 | 44.834423 | 1 |
TCGGAAG | 12990 | 0.0 | 40.767754 | 4 |
CGCCGTA | 6415 | 0.0 | 36.921818 | 46-47 |
GTCTGGA | 75235 | 0.0 | 33.985607 | 1 |
GGAGTCT | 81490 | 0.0 | 33.5221 | 5 |
GAGTCTT | 82260 | 0.0 | 33.315186 | 6 |
CGTATCA | 6945 | 0.0 | 33.22918 | 50-51 |
AGTCTTG | 82820 | 0.0 | 32.983532 | 7 |
TGGAGTC | 83550 | 0.0 | 32.440002 | 4 |
GGTCGCC | 7615 | 0.0 | 30.824541 | 44-45 |
GTCTTGG | 90050 | 0.0 | 30.47332 | 8 |
TCTGGAG | 83705 | 0.0 | 30.468285 | 2 |
GCCGTAT | 7715 | 0.0 | 30.06291 | 48-49 |