Basic Statistics
Measure | Value |
---|---|
Filename | GF-S11.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30526754 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 484119 | 1.5858843033229146 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 208070 | 0.6815988362208442 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 67129 | 0.21990218809376194 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 52774 | 0.17287786313605435 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 49079 | 0.1607737265481944 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 47836 | 0.15670188844840824 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 45745 | 0.1498521591912458 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 39644 | 0.12986641160733958 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 36227 | 0.1186729516017327 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 34886 | 0.1142800836276271 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 34418 | 0.11274700218699965 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 34161 | 0.11190511772067217 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATACC | 93030 | 0.0 | 58.854763 | 94 |
GATCGGA | 7880 | 0.0 | 57.657303 | 2 |
ATCGGAA | 8610 | 0.0 | 52.77531 | 3 |
AGATCGG | 8740 | 0.0 | 52.473946 | 1 |
CGTCTGG | 15340 | 0.0 | 49.50184 | 1 |
AGAGCGT | 10320 | 0.0 | 43.0263 | 9 |
AAGAGCG | 11120 | 0.0 | 40.52245 | 8 |
GTCTGGA | 146075 | 0.0 | 34.42662 | 1 |
CGTGTCT | 13500 | 0.0 | 34.3549 | 1 |
CGGAAGA | 14205 | 0.0 | 34.04127 | 5 |
GGAGTCT | 162740 | 0.0 | 33.69254 | 5 |
GAGTCTT | 164380 | 0.0 | 33.42699 | 6 |
AGTCTTG | 164970 | 0.0 | 33.180126 | 7 |
TGGAGTC | 165170 | 0.0 | 32.847435 | 4 |
CGCCGTA | 6225 | 0.0 | 32.423912 | 46-47 |
TCTGGAG | 160100 | 0.0 | 31.530348 | 2 |
CTGGAGT | 172045 | 0.0 | 31.133804 | 3 |
GTCTTGG | 179205 | 0.0 | 30.75337 | 8 |
TCGGAAG | 16250 | 0.0 | 30.188961 | 4 |
CGTATCA | 6505 | 0.0 | 30.09382 | 50-51 |