Basic Statistics
Measure | Value |
---|---|
Filename | CON-S12.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26365901 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 668489 | 2.535430137585664 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 297415 | 1.1280289643809251 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 89154 | 0.3381412984900459 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 69344 | 0.2630063732697775 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 66549 | 0.2524055597417285 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 51936 | 0.19698169996162848 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 50408 | 0.1911863357144518 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 49981 | 0.1895668196584672 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 47263 | 0.17925805000936626 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 47044 | 0.17842743170430625 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 43914 | 0.16655603766395088 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 39646 | 0.15036846265940237 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 37655 | 0.1428170423608888 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 31282 | 0.11864567040587766 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 30259 | 0.11476565887128226 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8650 | 0.0 | 66.21577 | 2 |
GTATACC | 116115 | 0.0 | 62.06067 | 94 |
ATCGGAA | 9340 | 0.0 | 60.92469 | 3 |
AGATCGG | 9490 | 0.0 | 60.116177 | 1 |
CGTCTGG | 16640 | 0.0 | 54.833397 | 1 |
AGAGCGT | 11260 | 0.0 | 49.497437 | 9 |
AAGAGCG | 11580 | 0.0 | 48.941635 | 8 |
CGTGTCT | 15275 | 0.0 | 43.291325 | 1 |
CGGAAGA | 14225 | 0.0 | 41.39654 | 5 |
TCGGAAG | 15445 | 0.0 | 38.881508 | 4 |
GTCTGGA | 183535 | 0.0 | 36.150352 | 1 |
CGCCGTA | 7320 | 0.0 | 35.50427 | 46-47 |
GGAGTCT | 206720 | 0.0 | 35.07912 | 5 |
GAGTCTT | 208745 | 0.0 | 34.799686 | 6 |
AGTCTTG | 209200 | 0.0 | 34.687862 | 7 |
TGGAGTC | 207265 | 0.0 | 34.603027 | 4 |
TCTGGAG | 196035 | 0.0 | 34.1982 | 2 |
CGTATCA | 7680 | 0.0 | 32.742874 | 50-51 |
CTGGAGT | 216930 | 0.0 | 32.67546 | 3 |
GTCTTGG | 223820 | 0.0 | 32.521023 | 8 |