Basic Statistics
Measure | Value |
---|---|
Filename | GF-S6.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23179624 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 496552 | 2.142191780160023 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 212930 | 0.9186085158240703 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 77377 | 0.33381473314666366 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 65937 | 0.284461042163583 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 47312 | 0.2041102996321252 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 42848 | 0.18485200622753847 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 40513 | 0.1747785037410443 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 33788 | 0.14576595375317564 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 32575 | 0.1405329094207913 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 32413 | 0.13983401974078613 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 31595 | 0.13630505827014278 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 28025 | 0.12090360050706604 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 27058 | 0.11673183309617102 | No Hit |
GGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATT | 23671 | 0.10211986182347048 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATACC | 88140 | 0.0 | 62.205395 | 94 |
GATCGGA | 6710 | 0.0 | 60.35768 | 2 |
ATCGGAA | 7200 | 0.0 | 55.47209 | 3 |
AGATCGG | 7295 | 0.0 | 55.073536 | 1 |
CGTCTGG | 12675 | 0.0 | 52.791523 | 1 |
AGAGCGT | 8520 | 0.0 | 45.27983 | 9 |
AAGAGCG | 9130 | 0.0 | 43.1295 | 8 |
CGTGTCT | 10775 | 0.0 | 40.73163 | 1 |
CGGAAGA | 10780 | 0.0 | 38.492157 | 5 |
GTCTGGA | 136010 | 0.0 | 37.443848 | 1 |
GGAGTCT | 152050 | 0.0 | 36.138474 | 5 |
GAGTCTT | 153090 | 0.0 | 35.907158 | 6 |
TGGAGTC | 152275 | 0.0 | 35.775616 | 4 |
AGTCTTG | 154090 | 0.0 | 35.599197 | 7 |
TCTGGAG | 145930 | 0.0 | 35.164577 | 2 |
CGCCGTA | 5255 | 0.0 | 35.05619 | 46-47 |
CTGGAGT | 157415 | 0.0 | 34.261642 | 3 |
TCGGAAG | 12510 | 0.0 | 33.240566 | 4 |
GTCTTGG | 167010 | 0.0 | 33.02295 | 8 |
TCTTGGA | 170460 | 0.0 | 32.35183 | 9 |