Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S10.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20111009 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 579461 | 2.88131241948129 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 98509 | 0.4898262439244097 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 77520 | 0.3854605206531408 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 74994 | 0.37290023588572807 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG | 45917 | 0.22831773383423976 | TruSeq Adapter, Index 5 (100% over 49bp) |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 41470 | 0.2062054668664312 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 34591 | 0.17200032081930847 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 30904 | 0.15366707856378564 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 27205 | 0.13527416749701618 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 14065 | 0.0 | 74.63949 | 6 |
GGGCGAT | 82595 | 0.0 | 72.79065 | 9 |
GGGCGCG | 14610 | 0.0 | 72.0965 | 4 |
AGGGCGA | 84665 | 0.0 | 71.04463 | 8 |
GAGGGCG | 86325 | 0.0 | 69.56977 | 7 |
CGGGCGC | 15310 | 0.0 | 68.1241 | 3 |
CGCGGTG | 15450 | 0.0 | 67.91826 | 7 |
CCGGGCG | 15450 | 0.0 | 66.26364 | 2 |
GGCGCGG | 16145 | 0.0 | 65.06752 | 5 |
ATGTGAG | 90480 | 0.0 | 64.987976 | 3 |
TGAGGGC | 92960 | 0.0 | 64.710236 | 6 |
GTGAGGG | 92710 | 0.0 | 64.69386 | 5 |
AGATCGG | 10565 | 0.0 | 64.38672 | 1 |
GATCGGA | 10610 | 0.0 | 64.29801 | 2 |
CTCCCTC | 89815 | 0.0 | 63.35642 | 94 |
GATGTGA | 89940 | 0.0 | 63.165386 | 2 |
TGTGAGG | 95785 | 0.0 | 62.63125 | 4 |
GGATGTG | 90950 | 0.0 | 62.38647 | 1 |
GCCGGGC | 17925 | 0.0 | 56.963715 | 1 |
GCGGTGG | 19380 | 0.0 | 54.31496 | 8 |