Basic Statistics
Measure | Value |
---|---|
Filename | CON-S3.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24229804 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1623584 | 6.700772321559019 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 344554 | 1.422025535163223 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 192963 | 0.7963869621066683 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 97710 | 0.4032636830244273 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 86180 | 0.3556776604548679 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCATCTCGTATG | 58008 | 0.23940763202211623 | TruSeq Adapter, Index 14 (97% over 49bp) |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 53351 | 0.22018750131036968 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 45186 | 0.18648933354970595 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 37394 | 0.15433059219133594 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 34119 | 0.1408141807502859 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 30143 | 0.12440463818857139 | No Hit |
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 28957 | 0.11950984003007206 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 40195 | 0.0 | 84.098946 | 6 |
GGGCGCG | 41760 | 0.0 | 81.129524 | 4 |
CGCGGTG | 41925 | 0.0 | 80.646545 | 7 |
CGGGCGC | 42310 | 0.0 | 79.43048 | 3 |
CCGGGCG | 42365 | 0.0 | 78.62894 | 2 |
GGCGCGG | 43815 | 0.0 | 77.37806 | 5 |
GGGCGAT | 205015 | 0.0 | 77.11984 | 9 |
CTCCCTC | 187685 | 0.0 | 77.02475 | 94 |
AGGGCGA | 207605 | 0.0 | 76.16474 | 8 |
GAGGGCG | 210365 | 0.0 | 75.184784 | 7 |
ATGTGAG | 211600 | 0.0 | 73.18452 | 3 |
GTGAGGG | 216745 | 0.0 | 72.94599 | 5 |
TGAGGGC | 217135 | 0.0 | 72.85198 | 6 |
GCGGTGG | 46955 | 0.0 | 72.05817 | 8 |
CGGTGGC | 47020 | 0.0 | 71.96048 | 9 |
GATGTGA | 215275 | 0.0 | 71.883354 | 2 |
TGTGAGG | 221395 | 0.0 | 71.326836 | 4 |
GCCGGGC | 46865 | 0.0 | 71.11244 | 1 |
GGATGTG | 217600 | 0.0 | 71.10247 | 1 |
CTATGCC | 51975 | 0.0 | 65.10188 | 94 |