FastQCFastQC Report
Thu 29 Mar 2018
CON-S5.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S5.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24212986
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT3801001.5698187741074148No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1781920.73593566691857No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC960750.3967912094774267Illumina Single End PCR Primer 1 (100% over 50bp)
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC631140.26066177876615465No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC475010.1961798515887301No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC458580.18939423662988117No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA438090.18093183550347736No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA406850.168029668046725No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG374350.15460711867590393No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG352880.14573997606077996No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA344170.1421427328293999No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT302720.1250238198626142No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG252970.10447699428728038No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA144500.074.552672
ATCGGAA147300.072.664153
AGATCGG149850.072.11151
AGAGCGT165050.064.03379
AAGAGCG166850.063.9630558
CGGAAGA195900.055.7267655
TCGGAAG204750.053.4462784
GTATACC816300.051.7729894
CGTCTGG124800.051.6199071
CGCCGTA124350.040.02295346-47
CGTGTCT113950.039.8633731
CGTATCA129050.037.8431250-51
GTCGCCG135550.037.0099744-45
TCGCCGT133150.036.2483546-47
GCCGTAT135450.036.1381348-49
CCGTATC139000.036.02666548-49
TCGTGTA150350.034.7875814-15
GGTCGCC142700.034.28286744-45
GAGCGTC157050.033.6924410-11
TGGTCGC151350.033.2390342-43