Basic Statistics
Measure | Value |
---|---|
Filename | GF-S5.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28789430 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 363188 | 1.261532444372813 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 149494 | 0.5192669670778477 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 100803 | 0.35013892251427 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 68085 | 0.236493046232593 | No Hit |
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA | 65908 | 0.2289312431680655 | No Hit |
GCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCG | 59115 | 0.20533577774898634 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 48249 | 0.16759275887018255 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC | 43848 | 0.1523058983800652 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 42052 | 0.1460674976892561 | No Hit |
TCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTC | 35134 | 0.1220378451396919 | No Hit |
CCGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCG | 34983 | 0.12151334708606597 | No Hit |
CCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTA | 33002 | 0.114632349442139 | No Hit |
CGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCGA | 32059 | 0.11135684172975985 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 31276 | 0.10863709354440154 | No Hit |
CGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCA | 31198 | 0.10836616077497888 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 30986 | 0.10762977940167624 | No Hit |
CTCCGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGC | 30936 | 0.10745610454948222 | No Hit |
GCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGA | 28995 | 0.10071404678731047 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8920 | 0.0 | 64.10138 | 2 |
AGATCGG | 9675 | 0.0 | 59.836727 | 1 |
GTATACC | 68020 | 0.0 | 59.103443 | 94 |
ATCGGAA | 10215 | 0.0 | 55.75217 | 3 |
AGAGCGT | 10125 | 0.0 | 55.64491 | 9 |
CGTCTGG | 10550 | 0.0 | 45.030502 | 1 |
CGGAAGA | 13405 | 0.0 | 43.71453 | 5 |
AGTTTAC | 20710 | 0.0 | 41.17894 | 94 |
TTCGCGC | 5525 | 0.0 | 39.88803 | 8 |
TCGGAAG | 14730 | 0.0 | 39.71491 | 4 |
GTCTGGA | 103200 | 0.0 | 37.068596 | 1 |
GGAGTCT | 113750 | 0.0 | 35.573647 | 5 |
CGCCGTA | 7495 | 0.0 | 35.55197 | 46-47 |
GAGTCTT | 114700 | 0.0 | 35.318626 | 6 |
GTCCCGT | 20335 | 0.0 | 35.216717 | 1 |
AGTCTTG | 115305 | 0.0 | 35.085384 | 7 |
TGGAGTC | 115425 | 0.0 | 34.8792 | 4 |
CGTTCGA | 5860 | 0.0 | 34.40026 | 8 |
TCTGGAG | 113125 | 0.0 | 33.724003 | 2 |
CGTATCA | 7705 | 0.0 | 33.611023 | 50-51 |