Basic Statistics
Measure | Value |
---|---|
Filename | GF-S10.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21318541 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 387797 | 1.819059756481459 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 164366 | 0.7710002293308909 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 67752 | 0.3178078649941382 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 49136 | 0.23048481601062662 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 40868 | 0.191701674143648 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 39434 | 0.1849751350244841 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 34751 | 0.16300834095541528 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 33477 | 0.15703232224006325 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 28154 | 0.13206344655574695 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 26146 | 0.12264441548790792 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 23307 | 0.10932736907277096 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 23080 | 0.10826256824986288 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 21935 | 0.10289165661008415 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATACC | 68970 | 0.0 | 62.302715 | 94 |
GATCGGA | 5135 | 0.0 | 57.828884 | 2 |
ATCGGAA | 5650 | 0.0 | 52.479767 | 3 |
AGATCGG | 5690 | 0.0 | 52.19404 | 1 |
CGTCTGG | 10080 | 0.0 | 51.186787 | 1 |
AGAGCGT | 6970 | 0.0 | 40.6527 | 9 |
AAGAGCG | 7405 | 0.0 | 39.78747 | 8 |
CGTGTCT | 9745 | 0.0 | 37.467545 | 1 |
GTCTGGA | 110620 | 0.0 | 36.260754 | 1 |
GGAGTCT | 123920 | 0.0 | 34.790684 | 5 |
GAGTCTT | 124180 | 0.0 | 34.746487 | 6 |
AGTCTTG | 125340 | 0.0 | 34.38488 | 7 |
TGGAGTC | 125255 | 0.0 | 34.10535 | 4 |
TCTGGAG | 119815 | 0.0 | 33.686054 | 2 |
CGGAAGA | 9265 | 0.0 | 33.17248 | 5 |
CTGGAGT | 128980 | 0.0 | 32.87666 | 3 |
CGCCGTA | 4085 | 0.0 | 32.441135 | 46-47 |
GTCTTGG | 134930 | 0.0 | 32.13682 | 8 |
TCTTGGA | 139375 | 0.0 | 31.095114 | 9 |
TCGGAAG | 10465 | 0.0 | 29.9497 | 4 |