FastQCFastQC Report
Thu 29 Mar 2018
GF-P3.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-P3.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16534894
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG10852036.563108296914392No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2088581.2631347984450338No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA1491560.9020680749450224No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC750960.4541668062704242No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA737390.445959919670486No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATG550200.3327508479945502TruSeq Adapter, Index 7 (100% over 49bp)
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT417240.25233908363730667No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG390050.23589507135636914No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG303630.18362984365064572No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA278710.16855868564987472No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA229640.13888205149667124No Hit
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA224350.1356827567204241No Hit
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG198890.120285016644195No Hit
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT198140.11983143042828094No Hit
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT190490.11520485102595758No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT278950.082.688856
GGGCGCG286650.080.306824
CGCGGTG289350.079.593557
CGGGCGC291250.078.537873
CTCCCTC1266850.078.15269594
CCGGGCG290400.077.909832
GGCGCGG302200.076.454555
GGGCGAT1417800.075.9838949
AGGGCGA1436200.075.035468
GAGGGCG1454450.074.115887
ATGTGAG1458900.072.253783
GTGAGGG1495500.072.066785
TGAGGGC1497350.072.00636
GATCGGA109000.071.719742
CGGTGGC324150.071.2387549
GATGTGA1478350.071.226852
GCCGGGC318000.071.2038651
TGTGAGG1524850.070.6184
GCGGTGG327850.070.376388
GGATGTG1496550.070.363091