Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S6.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25024279 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 370417 | 1.4802304593870617 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 135235 | 0.5404151704031113 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 132355 | 0.5289063473117447 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 50580 | 0.2021237055421257 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 42842 | 0.17120173572233588 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 42613 | 0.1702866244418071 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 38121 | 0.15233605731457836 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 36070 | 0.14414001698110862 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 30600 | 0.12228124534576999 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 19650 | 0.0 | 77.5001 | 2 |
AGATCGG | 20300 | 0.0 | 74.912415 | 1 |
ATCGGAA | 20445 | 0.0 | 74.101295 | 3 |
AGAGCGT | 21665 | 0.0 | 68.95011 | 9 |
AAGAGCG | 21925 | 0.0 | 68.861145 | 8 |
CGGAAGA | 24400 | 0.0 | 62.978127 | 5 |
TCGGAAG | 26075 | 0.0 | 59.27153 | 4 |
GTATACC | 78610 | 0.0 | 53.62634 | 94 |
CGTCTGG | 10000 | 0.0 | 46.57094 | 1 |
CGCCGTA | 17420 | 0.0 | 40.59945 | 46-47 |
GTCGCCG | 18755 | 0.0 | 38.497307 | 44-45 |
CGTATCA | 18010 | 0.0 | 38.29796 | 50-51 |
CCGTATC | 18910 | 0.0 | 37.702457 | 48-49 |
GGTCGCC | 18855 | 0.0 | 37.047016 | 44-45 |
TCGCCGT | 18310 | 0.0 | 37.009113 | 46-47 |
GAGCGTC | 20380 | 0.0 | 36.83323 | 10-11 |
TCGTGTA | 20335 | 0.0 | 36.74323 | 14-15 |
GCCGTAT | 18790 | 0.0 | 36.742664 | 48-49 |
GTCGTGT | 20930 | 0.0 | 35.552753 | 14-15 |
TGGTCGC | 20270 | 0.0 | 35.319595 | 42-43 |