FastQCFastQC Report
Thu 29 Mar 2018
GFR-P1.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGFR-P1.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22953732
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG8745163.80990768734252No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA2077570.9051120750211774No Hit
CAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTG1758230.7659887289787997No Hit
GTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC1127620.4912578050488696No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA1007280.43883060061867063No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG927270.4039735237825378No Hit
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC878370.382669798532108No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC820490.35745385543405317No Hit
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTT670610.292157284052981No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT572830.2495585467321828No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA559580.24378606494142216No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGA402700.17543988053881607No Hit
GCCGAAACGATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCG390100.169950577100055No Hit
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG370100.16123739703852952No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATG343960.14984927069811568TruSeq Adapter, Index 9 (100% over 49bp)
GGACAGCTCTTCTGGAACGGAAAAAACCTTTAATAGTGAATAATTAACAA315850.1376028961216416No Hit
AGCCGACTTAGAACTGGTGCGGACCAGGGGAATCCGACTGTTTAATTAAA312910.13632205865259733No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG308440.13437466290884637No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA306380.13347720536250923No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAG304140.13250132919561838No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC295770.12885486333986995No Hit
AACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAA293680.12794433602344055No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATA278330.12125697032621971No Hit
AGCAGCCGACTTAGAACTGGTGCGGACCAGGGGAATCCGACTGTTTAATT276460.12044228799046708No Hit
AGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAGGGCGCGGGCCCGGGTGG271910.11846003952647004No Hit
AGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCA244960.1067190293935644No Hit
TGGAGCCGGGCGTGGAATGCGAGTGCCTAGTGGGCCACTTTTGGTAAGCA231280.10075921423148096No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACACG208600.082.9734041
GCGCGGT146200.081.827716
AACACGG214000.080.861252
ACACGGG215050.080.422373
ATGTGAG1054700.078.508293
TGAGGGC1090900.078.001276
GTGAGGG1089900.077.991165
GGATGTG1086150.076.0871661
ACGGGAA232350.075.42565
GTTGATC281400.074.412817
GCGACCT112100.071.919542
CGCGGTG168250.071.081947
GAGGGCG1203500.070.884757
CGGGAAA253200.069.303366
TACCTGG293600.068.4425661
CTGGTTG306700.067.854914
CTAATCC143750.067.596012
CCTGGTT306000.066.19753
GATCGGA75950.065.733252
ATCCTAG150200.065.099695