Basic Statistics
Measure | Value |
---|---|
Filename | CON-S6.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 22816311 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 410208 | 1.7978717067802943 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 187393 | 0.8213115608390856 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 144874 | 0.634958035065353 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 79901 | 0.3501924566157956 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 58728 | 0.257394808477146 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 55815 | 0.2446276262626329 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 43735 | 0.19168304639606287 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 40720 | 0.17846881557671615 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 36385 | 0.15946924987128727 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 36329 | 0.15922381142157468 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 32049 | 0.1404653013363992 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 31010 | 0.1359115415283391 | No Hit |
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 29018 | 0.127180945245706 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 27184 | 0.11914283601761914 | No Hit |
GGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 25825 | 0.11318657078263003 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 25130 | 0.11014050430851857 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 24500 | 0.10737932174925209 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 21860 | 0.0 | 75.14035 | 2 |
AGATCGG | 22615 | 0.0 | 72.89166 | 1 |
ATCGGAA | 22390 | 0.0 | 72.82215 | 3 |
AGAGCGT | 23240 | 0.0 | 69.116714 | 9 |
AAGAGCG | 24105 | 0.0 | 67.06598 | 8 |
CGGAAGA | 26060 | 0.0 | 63.172653 | 5 |
TCGGAAG | 26960 | 0.0 | 61.2972 | 4 |
GTATACC | 75670 | 0.0 | 58.60803 | 94 |
CGTCTGG | 11255 | 0.0 | 53.946987 | 1 |
CGTGTCT | 10735 | 0.0 | 41.00721 | 1 |
CGCCGTA | 18760 | 0.0 | 40.958183 | 46-47 |
CGTATCA | 19215 | 0.0 | 38.724205 | 50-51 |
GTCGCCG | 20235 | 0.0 | 38.447357 | 44-45 |
CCGTATC | 20230 | 0.0 | 37.962166 | 48-49 |
GCCGTAT | 19670 | 0.0 | 37.75266 | 48-49 |
TCGCCGT | 19795 | 0.0 | 37.297222 | 46-47 |
GGTCGCC | 20195 | 0.0 | 37.150578 | 44-45 |
TGGTCGC | 21055 | 0.0 | 36.848312 | 42-43 |
TCGTGTA | 22430 | 0.0 | 35.92004 | 14-15 |
GAGCGTC | 22660 | 0.0 | 35.701324 | 10-11 |