Basic Statistics
Measure | Value |
---|---|
Filename | GF-S5.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28789430 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 902942 | 3.136366367795403 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 302079 | 1.0492705135183296 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 213141 | 0.7403446334296997 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 178816 | 0.621116847398507 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 104137 | 0.36171956165856706 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 93693 | 0.32544235853228076 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 71720 | 0.24911920798709805 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 63900 | 0.22195646110395378 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 62270 | 0.21629466092242886 | No Hit |
GTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC | 50740 | 0.1762452400064885 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATCTCGTATG | 49785 | 0.17292805032958278 | TruSeq Adapter, Index 25 (100% over 49bp) |
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTT | 41275 | 0.14336859048616107 | No Hit |
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC | 33729 | 0.11715758179304 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 33624 | 0.11679286460343258 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 32948 | 0.11444478060176946 | No Hit |
TAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGA | 31010 | 0.10771314333072937 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 30992 | 0.10765062038393954 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 30533 | 0.10605628524079844 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 36225 | 0.0 | 82.36096 | 6 |
CGCGGTG | 38765 | 0.0 | 77.03755 | 7 |
ATGTGAG | 123105 | 0.0 | 74.56902 | 3 |
TGAGGGC | 127690 | 0.0 | 73.66591 | 6 |
GTGAGGG | 128345 | 0.0 | 73.13456 | 5 |
GAGGGCG | 132755 | 0.0 | 70.97606 | 7 |
GGATGTG | 126545 | 0.0 | 70.29774 | 1 |
GGGCGAT | 136335 | 0.0 | 69.17768 | 9 |
AGGGCGA | 137645 | 0.0 | 68.40675 | 8 |
GCGGTGG | 43940 | 0.0 | 68.0073 | 8 |
GCGACCT | 15185 | 0.0 | 67.91855 | 2 |
GATGTGA | 135365 | 0.0 | 65.74846 | 2 |
CTCCCTC | 134780 | 0.0 | 65.616905 | 94 |
CTAATCC | 26600 | 0.0 | 65.60513 | 2 |
ATCCTAG | 27320 | 0.0 | 64.69898 | 5 |
CGGTGGC | 46740 | 0.0 | 63.91304 | 9 |
GATCCTT | 54325 | 0.0 | 60.793728 | 7 |
GATCGGA | 11905 | 0.0 | 59.163654 | 2 |
GAGATCC | 56225 | 0.0 | 58.7247 | 5 |
AGATCGG | 12075 | 0.0 | 58.4038 | 1 |