Basic Statistics
Measure | Value |
---|---|
Filename | GF-P1.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24056726 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 441326 | 1.834522287031078 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 195237 | 0.811569288356196 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 65243 | 0.27120481814524555 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 64193 | 0.2668401344389091 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 63271 | 0.2630075264605832 | Illumina Single End PCR Primer 1 (100% over 50bp) |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 46327 | 0.19257400196518845 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 45553 | 0.18935660654737474 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 42433 | 0.1763872606771179 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 41744 | 0.1735231967974362 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 37945 | 0.15773135546374847 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 32549 | 0.13530103805480428 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 32527 | 0.1352095875390525 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 28739 | 0.11946347146324068 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 27825 | 0.11566411821791545 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 27011 | 0.11228044913509842 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10135 | 0.0 | 70.32399 | 2 |
AGATCGG | 10350 | 0.0 | 69.253075 | 1 |
ATCGGAA | 10495 | 0.0 | 67.37985 | 3 |
AGAGCGT | 11690 | 0.0 | 59.615177 | 9 |
CGTCTGG | 12635 | 0.0 | 55.16548 | 1 |
GTATACC | 88190 | 0.0 | 54.629444 | 94 |
CGGAAGA | 14615 | 0.0 | 49.519737 | 5 |
AAGAGCG | 14485 | 0.0 | 48.209267 | 8 |
TCGGAAG | 16420 | 0.0 | 44.783504 | 4 |
CGTGTCT | 11120 | 0.0 | 39.080635 | 1 |
CGCCGTA | 8625 | 0.0 | 38.469334 | 46-47 |
CGTATCA | 9015 | 0.0 | 36.028408 | 50-51 |
GTCTGGA | 133825 | 0.0 | 33.17639 | 1 |
GGTCGCC | 10015 | 0.0 | 33.15288 | 44-45 |
GCCGTAT | 10035 | 0.0 | 32.48032 | 48-49 |
CCGTATC | 10335 | 0.0 | 32.378796 | 48-49 |
GAGTCTT | 150290 | 0.0 | 32.2786 | 6 |
GGAGTCT | 150615 | 0.0 | 32.20713 | 5 |
AGTCTTG | 151785 | 0.0 | 31.89869 | 7 |
TGGAGTC | 151745 | 0.0 | 31.68586 | 4 |