Basic Statistics
Measure | Value |
---|---|
Filename | GF-S6.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23179624 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1260912 | 5.4397431123127795 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 124485 | 0.5370449494780416 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 120054 | 0.5179290224897523 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 94444 | 0.4074440551753557 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 90540 | 0.39060167671399676 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 73517 | 0.3171621765737011 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 68618 | 0.29602723495428573 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 64738 | 0.2792883957047793 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 42052 | 0.18141795570109334 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 39961 | 0.1723971018684341 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGAGCATCTCGTATG | 33700 | 0.14538630997638272 | TruSeq Adapter, Index 1 (97% over 37bp) |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 31627 | 0.13644311055261293 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 30743 | 0.13262941624937488 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 23813 | 0.1027324688269318 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 26755 | 0.0 | 82.72697 | 6 |
GGGCGAT | 161865 | 0.0 | 78.88905 | 9 |
GGGCGCG | 28235 | 0.0 | 78.38379 | 4 |
CGCGGTG | 28305 | 0.0 | 78.16375 | 7 |
AGGGCGA | 165690 | 0.0 | 77.09624 | 8 |
CTCCCTC | 156635 | 0.0 | 76.73747 | 94 |
GAGGGCG | 167435 | 0.0 | 76.30677 | 7 |
ATGTGAG | 168145 | 0.0 | 74.66969 | 3 |
GTGAGGG | 171765 | 0.0 | 74.234505 | 5 |
TGAGGGC | 172185 | 0.0 | 74.15244 | 6 |
GATGTGA | 167820 | 0.0 | 72.445206 | 2 |
GGCGCGG | 30905 | 0.0 | 71.82645 | 5 |
GGATGTG | 169690 | 0.0 | 71.64087 | 1 |
CGGGCGC | 30860 | 0.0 | 71.30439 | 3 |
TGTGAGG | 178920 | 0.0 | 71.3013 | 4 |
CCGGGCG | 31065 | 0.0 | 69.97587 | 2 |
CGGTGGC | 33355 | 0.0 | 66.35781 | 9 |
GCGGTGG | 33695 | 0.0 | 65.81374 | 8 |
GCCGGGC | 38150 | 0.0 | 57.013107 | 1 |
ACTAATC | 15770 | 0.0 | 56.363445 | 1 |