Basic Statistics
Measure | Value |
---|---|
Filename | CON-S12.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26365901 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1701736 | 6.454306264747031 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 281440 | 1.0674393414433287 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 171080 | 0.6488684001354629 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 91992 | 0.34890520145698795 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 89667 | 0.34008699342381665 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 66100 | 0.25070260257747307 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCTCGTATG | 52227 | 0.19808539825739313 | TruSeq Adapter, Index 20 (97% over 49bp) |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 43194 | 0.16382523775690427 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 37850 | 0.14355663400238056 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 35468 | 0.13452223764323473 | No Hit |
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 31242 | 0.11849395929993062 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 30863 | 0.11705649657108247 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 28861 | 0.10946335571843345 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 33790 | 0.0 | 83.42414 | 6 |
GGGCGCG | 35270 | 0.0 | 80.14085 | 4 |
CGCGGTG | 35835 | 0.0 | 78.78494 | 7 |
GGGCGAT | 212620 | 0.0 | 78.46222 | 9 |
AGGGCGA | 215735 | 0.0 | 77.32319 | 8 |
CTCCCTC | 199805 | 0.0 | 76.62976 | 94 |
GAGGGCG | 218745 | 0.0 | 76.26034 | 7 |
CGGGCGC | 37070 | 0.0 | 75.32377 | 3 |
CCGGGCG | 36990 | 0.0 | 74.8514 | 2 |
ATGTGAG | 218810 | 0.0 | 74.568535 | 3 |
TGAGGGC | 225485 | 0.0 | 73.95629 | 6 |
GTGAGGG | 225730 | 0.0 | 73.8569 | 5 |
GATGTGA | 223340 | 0.0 | 72.98254 | 2 |
GGCGCGG | 38900 | 0.0 | 72.916176 | 5 |
GGATGTG | 226610 | 0.0 | 71.90973 | 1 |
TGTGAGG | 231905 | 0.0 | 71.83151 | 4 |
GCGGTGG | 41605 | 0.0 | 67.848236 | 8 |
CGGTGGC | 41880 | 0.0 | 67.49402 | 9 |
GCCGGGC | 42730 | 0.0 | 64.6687 | 1 |
CTATGCC | 48355 | 0.0 | 58.23588 | 94 |