FastQCFastQC Report
Thu 29 Mar 2018
GF-S10.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S10.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21318541
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG9831574.6117461790654435No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1602970.7519135573114502No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA996970.46765395436770274No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA918920.43104263091925477No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC729030.3419699312443567No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG562830.2640096242983983No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA497320.23328050451482588No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT445520.2089824064414164No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG340000.1594855858100233No Hit
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG316970.14868278274765612No Hit
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA279750.1312238018539824No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT254990.11960949860499366No Hit
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT249680.11711870901484299No Hit
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG246210.115491017889076No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT265550.083.916356
CGCGGTG281400.079.27347
GGGCGCG281050.079.195064
GGGCGAT1278800.078.864179
AGGGCGA1304750.077.306458
GAGGGCG1329350.075.8864757
CGGGCGC296750.074.402683
ATGTGAG1332200.074.0449753
CCGGGCG295250.073.765022
CTCCCTC1290400.073.3086694
GTGAGGG1378100.073.023885
TGAGGGC1381450.072.99036
GGCGCGG305950.072.858375
GATGTGA1332500.071.596152
GGATGTG1350800.070.656071
TGTGAGG1428900.070.413584
CGGTGGC330650.067.46579
GCGGTGG333350.067.1307148
GCCGGGC357900.060.831661
ACTAATC158300.060.306861