Basic Statistics
Measure | Value |
---|---|
Filename | GF-P3.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16534894 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1085203 | 6.563108296914392 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 208858 | 1.2631347984450338 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 149156 | 0.9020680749450224 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 75096 | 0.4541668062704242 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 73739 | 0.445959919670486 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATG | 55020 | 0.3327508479945502 | TruSeq Adapter, Index 7 (100% over 49bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 41724 | 0.25233908363730667 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 39005 | 0.23589507135636914 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 30363 | 0.18362984365064572 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 27871 | 0.16855868564987472 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 22964 | 0.13888205149667124 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 22435 | 0.1356827567204241 | No Hit |
GGGTGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 19889 | 0.120285016644195 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 19814 | 0.11983143042828094 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 19049 | 0.11520485102595758 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 27895 | 0.0 | 82.68885 | 6 |
GGGCGCG | 28665 | 0.0 | 80.30682 | 4 |
CGCGGTG | 28935 | 0.0 | 79.59355 | 7 |
CGGGCGC | 29125 | 0.0 | 78.53787 | 3 |
CTCCCTC | 126685 | 0.0 | 78.152695 | 94 |
CCGGGCG | 29040 | 0.0 | 77.90983 | 2 |
GGCGCGG | 30220 | 0.0 | 76.45455 | 5 |
GGGCGAT | 141780 | 0.0 | 75.983894 | 9 |
AGGGCGA | 143620 | 0.0 | 75.03546 | 8 |
GAGGGCG | 145445 | 0.0 | 74.11588 | 7 |
ATGTGAG | 145890 | 0.0 | 72.25378 | 3 |
GTGAGGG | 149550 | 0.0 | 72.06678 | 5 |
TGAGGGC | 149735 | 0.0 | 72.0063 | 6 |
GATCGGA | 10900 | 0.0 | 71.71974 | 2 |
CGGTGGC | 32415 | 0.0 | 71.238754 | 9 |
GATGTGA | 147835 | 0.0 | 71.22685 | 2 |
GCCGGGC | 31800 | 0.0 | 71.203865 | 1 |
TGTGAGG | 152485 | 0.0 | 70.618 | 4 |
GCGGTGG | 32785 | 0.0 | 70.37638 | 8 |
GGATGTG | 149655 | 0.0 | 70.36309 | 1 |