FastQCFastQC Report
Thu 29 Mar 2018
GF-P3.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-P3.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16534894
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT3853412.330471547020501No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1816361.0985011455168687No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC597670.36145983155380373No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC540370.32680584465796997Illumina Single End PCR Primer 1 (100% over 50bp)
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA461600.27916719635456994No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC436740.26413232525107205No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA404200.24445273129661432No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC372550.22531139298504121No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG338630.20479720039330157No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA326520.19747329496034266No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT288550.17450973680266713No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG237190.1434481527368727No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG214470.12970751430278296No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG212200.12833466002261643No Hit
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC208130.12587319882425616No Hit
GATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATG206020.12459710960348461No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT200080.1210047067734453No Hit
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT183690.11109233600167015No Hit
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG165620.10016393210624755No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA87300.074.0625842
AGATCGG90700.071.144041
ATCGGAA91900.069.691993
AGAGCGT99700.063.0678679
AAGAGCG101750.062.998258
CGTCTGG104450.059.076821
GTATACC735100.057.7601394
CGGAAGA121200.053.51125
TCGGAAG129350.050.8225444
CGTGTCT87150.047.8682941
CGCCGTA75300.039.5055346-47
CGTATCA80000.036.6324550-51
GTCGCCG83450.036.26642644-45
CCGTATC84900.035.34543248-49
TCGCCGT82000.035.1027746-47
GCCGTAT83500.034.92491548-49
GGTCGCC84550.034.62738444-45
GAGCGTC93000.033.85611310-11
TCGTGTA92900.033.81575814-15
GTCTGGA1153850.033.6357881