Basic Statistics
Measure | Value |
---|---|
Filename | CON-S11.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25603258 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1060655 | 4.142656375997149 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 161460 | 0.6306228683865155 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 137562 | 0.5372831848196818 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATCTCGTATG | 110448 | 0.43138259982381927 | TruSeq Adapter, Index 19 (97% over 49bp) |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 89879 | 0.35104516776732086 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 86802 | 0.3390271659958276 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 49544 | 0.19350662325864934 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 40188 | 0.15696439882768046 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 35088 | 0.13704505887492913 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 28059 | 0.10959152151651949 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 18845 | 0.0 | 73.53426 | 6 |
GGGCGAT | 146780 | 0.0 | 71.44701 | 9 |
GATCGGA | 18195 | 0.0 | 71.41094 | 2 |
GGGCGCG | 19725 | 0.0 | 70.399796 | 4 |
AGGGCGA | 149675 | 0.0 | 70.07914 | 8 |
AGATCGG | 18610 | 0.0 | 69.7358 | 1 |
GAGGGCG | 152065 | 0.0 | 68.89682 | 7 |
CGGGCGC | 20160 | 0.0 | 68.41426 | 3 |
CGCGGTG | 20855 | 0.0 | 66.49362 | 7 |
ATGTGAG | 154610 | 0.0 | 66.431046 | 3 |
CCGGGCG | 20720 | 0.0 | 66.15711 | 2 |
GTGAGGG | 158850 | 0.0 | 65.92458 | 5 |
TGAGGGC | 159475 | 0.0 | 65.74286 | 6 |
GATGTGA | 156950 | 0.0 | 65.41091 | 2 |
GGATGTG | 158625 | 0.0 | 64.55977 | 1 |
TGTGAGG | 163180 | 0.0 | 64.160866 | 4 |
CTCCCTC | 151620 | 0.0 | 63.58031 | 94 |
GGCGCGG | 22405 | 0.0 | 62.14669 | 5 |
GCCGGGC | 24825 | 0.0 | 55.20267 | 1 |
ATCGGAA | 24300 | 0.0 | 53.121624 | 3 |