FastQCFastQC Report
Thu 29 Mar 2018
CON-S2.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S2.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23787768
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT5379282.2613639077024796No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC2378670.9999551029756134No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA756990.31822657762594625No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC690890.29043918706454513No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC633880.266473088185491Illumina Single End PCR Primer 1 (100% over 50bp)
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC518960.2181625447162592No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT481390.2023687131974719No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA449200.18883654826295598No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG445080.18710456567425746No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC360240.15143917663901885No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA359950.15131726524321237No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT345420.1452090839291858No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG333170.140059378416672No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG312580.13140366931441405No Hit
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG254500.10698775942324644No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG248560.10449067772983157No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA101050.068.862822
AGATCGG105250.066.041081
ATCGGAA105150.065.603043
GTATACC930850.061.37159794
AGAGCGT116650.058.0926979
CGTCTGG127650.054.8206181
CGGAAGA145250.048.5670935
AAGAGCG147200.046.7063268
TCGGAAG159350.044.586864
CGTGTCT111600.041.5503351
CGCCGTA84500.038.45794746-47
GTCTGGA1459200.036.850651
CGTATCA88700.035.66258650-51
GGAGTCT1623550.035.5678635
GAGTCTT1636200.035.324726
TGGAGTC1628750.035.1629454
AGTCTTG1641550.035.157847
TCTGGAG1559100.034.6267852
GTCTTGG1767850.032.7415128
CTGGAGT1738500.032.6350063