Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S5.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26417955 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1173035 | 4.440294489107881 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 295917 | 1.1201359075674102 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 104724 | 0.39641221283025124 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 94358 | 0.3571737479301483 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 89960 | 0.3405259793954528 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 54686 | 0.20700315372631983 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 47412 | 0.17946884987880402 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCATTTTATCTCGTATG | 41227 | 0.15605674246927895 | TruSeq Adapter, Index 9 (97% over 36bp) |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 38856 | 0.14708178585359843 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 36158 | 0.13686903471521544 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 27825 | 0.10532609356023205 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 35675 | 0.0 | 84.35589 | 6 |
CGCGGTG | 37310 | 0.0 | 80.671974 | 7 |
GGGCGCG | 37820 | 0.0 | 79.79492 | 4 |
GGGCGAT | 150960 | 0.0 | 79.56264 | 9 |
AGGGCGA | 154455 | 0.0 | 77.75043 | 8 |
GAGGGCG | 157230 | 0.0 | 76.3991 | 7 |
CGGGCGC | 39365 | 0.0 | 76.077545 | 3 |
GGCGCGG | 40605 | 0.0 | 74.5315 | 5 |
CCGGGCG | 39645 | 0.0 | 74.50123 | 2 |
CTCCCTC | 152515 | 0.0 | 74.02592 | 94 |
ATGTGAG | 159875 | 0.0 | 73.39236 | 3 |
TGAGGGC | 163770 | 0.0 | 73.32796 | 6 |
GTGAGGG | 163450 | 0.0 | 73.32214 | 5 |
GATGTGA | 159315 | 0.0 | 71.16606 | 2 |
TGTGAGG | 170975 | 0.0 | 70.08863 | 4 |
GGATGTG | 162500 | 0.0 | 69.800476 | 1 |
CGGTGGC | 43535 | 0.0 | 69.222916 | 9 |
GCGGTGG | 43880 | 0.0 | 68.79672 | 8 |
GCCGGGC | 46995 | 0.0 | 62.913513 | 1 |
CTATGCC | 50320 | 0.0 | 59.79713 | 94 |