Basic Statistics
Measure | Value |
---|---|
Filename | CON-P4.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21968673 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1229262 | 5.595522314889024 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 327926 | 1.4926982617475346 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 132874 | 0.6048339833725961 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 113288 | 0.5156797590823988 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 73846 | 0.3361422877021293 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 72699 | 0.33092121677080816 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATG | 68867 | 0.3134781968851737 | TruSeq Adapter, Index 4 (100% over 49bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 54700 | 0.24899091538209886 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 41586 | 0.1892968227985368 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 39943 | 0.1818179914644822 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 29180 | 0.13282550111242494 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 24404 | 0.11108545336352359 | No Hit |
TGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGA | 23054 | 0.10494033936414822 | No Hit |
TCAACATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTT | 22832 | 0.10392980950647314 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 38755 | 0.0 | 80.73882 | 6 |
GGGCGCG | 40095 | 0.0 | 78.091286 | 4 |
CGCGGTG | 40260 | 0.0 | 77.758835 | 7 |
GGGCGAT | 154620 | 0.0 | 76.93031 | 9 |
CTCCCTC | 143860 | 0.0 | 75.94797 | 94 |
AGGGCGA | 157120 | 0.0 | 75.71314 | 8 |
CGGGCGC | 41350 | 0.0 | 75.380135 | 3 |
CCGGGCG | 41600 | 0.0 | 74.53164 | 2 |
GAGGGCG | 159735 | 0.0 | 74.528534 | 7 |
GGCGCGG | 42565 | 0.0 | 73.80268 | 5 |
ATGTGAG | 161260 | 0.0 | 72.33667 | 3 |
GTGAGGG | 164860 | 0.0 | 72.20267 | 5 |
TGAGGGC | 165080 | 0.0 | 72.1256 | 6 |
GATGTGA | 163895 | 0.0 | 71.13927 | 2 |
GGATGTG | 165745 | 0.0 | 70.31404 | 1 |
TGTGAGG | 170085 | 0.0 | 69.921036 | 4 |
GCGGTGG | 45000 | 0.0 | 69.62141 | 8 |
CGGTGGC | 45270 | 0.0 | 69.21844 | 9 |
GATCGGA | 13580 | 0.0 | 68.81292 | 2 |
AGATCGG | 13745 | 0.0 | 67.98459 | 1 |