Basic Statistics
Measure | Value |
---|---|
Filename | GFR-P3.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19212251 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 419568 | 2.1838565402877568 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 188657 | 0.9819619783231024 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63961 | 0.33291778251283516 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 55649 | 0.2896537214717838 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 52695 | 0.274278115562825 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 43291 | 0.22533018124737178 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 41230 | 0.21460265119376173 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 40311 | 0.20981924502235577 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 39710 | 0.20669103271657238 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 32675 | 0.17007377219879127 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 30913 | 0.16090254077983887 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 27914 | 0.145292709323858 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 26536 | 0.13812020257282712 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 23859 | 0.12418638503109293 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 22361 | 0.11638927682133654 | No Hit |
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 20325 | 0.10579187207162763 | No Hit |
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 19738 | 0.10273652993602884 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 8265 | 0.0 | 72.08334 | 2 |
AGATCGG | 8775 | 0.0 | 67.63444 | 1 |
ATCGGAA | 8795 | 0.0 | 66.99768 | 3 |
AGAGCGT | 9905 | 0.0 | 58.49917 | 9 |
GTATACC | 79255 | 0.0 | 56.92257 | 94 |
CGTCTGG | 11110 | 0.0 | 56.29804 | 1 |
AAGAGCG | 10460 | 0.0 | 56.15988 | 8 |
CGGAAGA | 12375 | 0.0 | 49.37024 | 5 |
TCGGAAG | 13560 | 0.0 | 45.707054 | 4 |
CGTGTCT | 9685 | 0.0 | 43.70172 | 1 |
CGCCGTA | 7125 | 0.0 | 37.69618 | 46-47 |
CGTATCA | 7200 | 0.0 | 36.45947 | 50-51 |
GTCTGGA | 118670 | 0.0 | 34.81817 | 1 |
GGAGTCT | 133330 | 0.0 | 34.07461 | 5 |
GAGTCTT | 133990 | 0.0 | 33.934628 | 6 |
AGTCTTG | 134980 | 0.0 | 33.661366 | 7 |
TGGAGTC | 134090 | 0.0 | 33.58174 | 4 |
GTCGCCG | 8320 | 0.0 | 33.043243 | 44-45 |
GGTCGCC | 8100 | 0.0 | 33.01242 | 44-45 |
TCTGGAG | 127545 | 0.0 | 32.667866 | 2 |