FastQCFastQC Report
Thu 29 Mar 2018
CON-P1.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-P1.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23357502
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCAC2317800.9923150172479916No Hit
GGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC2141730.9169345249333598No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT1889150.8087979613573404No Hit
GGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCG1420300.6080701609273115No Hit
CGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCG1139860.4880059520063404No Hit
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC1068530.45746758364828566No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT1024200.43848867057787255No Hit
ATCCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTC997800.4271860920744008No Hit
GTCCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC981070.42002351107579916No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC899780.3852209881005255No Hit
GCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGC857320.367042674340775No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA853370.3653515688449903No Hit
CCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGG796710.34109383785988756No Hit
CTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACT793940.33990792337297027No Hit
CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATA734970.3146612167688137No Hit
GGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGC734470.3144471527820055No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT727680.3115401638411505No Hit
CCGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCG725080.31042703110974795No Hit
GTTCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC709320.30367973424555417No Hit
GCCCTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTC647670.2772856446721058No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA622960.2667066024440456No Hit
GCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGC605210.25910733091235527No Hit
GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG592170.25352454213639797No Hit
CTCCGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGC583140.24965854653464228No Hit
GTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTTCATCCCGCAGCGCCAG573460.24551426775003593No Hit
CGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCGA569370.24376322433794506No Hit
GCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCGAG545390.23349671553062482No Hit
CGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCG526110.22524240819930147No Hit
TCCGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCC517500.22155622634646463No Hit
GTCGGGGAAAAAAAGAGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGG517410.22151769482883915No Hit
TCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTG514220.22015196659300298No Hit
GTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGC506850.21699666342745041No Hit
GTTCGGTTCATCCCGCAGCGCCAGTTCTGCTTACCAAAAGTGGCCCACTA485110.20768916128103082No Hit
GCCCTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATT483220.20687999941089594No Hit
GCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCC479680.205364426384294No Hit
GGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCCGGGAAGGGGGG476190.20387025975637293No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA468700.2006635812339864No Hit
GCTGGGTAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGC444510.19030716555220673No Hit
GCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTC439770.18827783895726521No Hit
GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC428060.18326446038621766No Hit
ACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTACCCA380210.16277853684867502No Hit
CCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGC380180.1627656930094665No Hit
CTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTT378740.16214918872745895No Hit
GTCCTGCTGTCTATATCAACCAACACCTTTTCTGGGGTCTGATGAGCGTC376450.16116877566787752No Hit
CGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACC374150.16018408132855988No Hit
GGCTCCTTCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTA371830.15919082442976992No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG367600.15737984310137274No Hit
CGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCA361280.15467407430811736No Hit
GGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCCGGGAAGGGGGGT358750.15359091053486798No Hit
GTCCCGTTCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCT352560.15094079837818275No Hit
GACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA350720.15015304290672862No Hit
GTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCCGGGAAGGGGGGTC345910.14809374735363395No Hit
TCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC343360.14700202102091225No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT341330.14613292123447105No Hit
GGCGGGGTTCTTGTTTGCCGAGTTCCTTTTATCTTTTTGGATCTTTCCTT341170.14606442075869244No Hit
GCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT339910.14552497951193583No Hit
GCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAA336230.14394946856902763No Hit
GTCCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTC333590.14281921071868045No Hit
GGGTGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC333320.14270361616580401No Hit
CGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGT331620.14197579861065623No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA322540.1380883966102197No Hit
GGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT317770.13604622617606968No Hit
GGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTT308330.13200469810513127No Hit
GCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCC308050.1318848222725187No Hit
GCCCCGCTTCGCGCCCCAGCCCGACCGACCCAGCCCTTAGAGCCAATCCT307750.1317563838804338No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA306380.13116984855657937No Hit
TTCCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTC305790.13091725305214572No Hit
GGCCCACTAGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGG304700.1304505935609039No Hit
TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAT296580.12697419441513907No Hit
GTGCGTACTTCATTGCTCAATTCAATTAAGCTCTCTATTCTTAATTTACT294680.12616075126526802No Hit
GCGGGGTTCTTGTTTGCCGAGTTCCTTTTATCTTTTTGGATCTTTCCTTT294650.1261479074260595No Hit
CCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTC290310.12428983202056453No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA289050.12375039077380792No Hit
GGTGTGTGCGTACTTCATTGCTCAATTCAATTAAGCTCTCTATTCTTAAT286640.1227186023573925No Hit
GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC285130.1220721291172318No Hit
GTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAA284990.1220121912009255No Hit
GTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCAT277590.11884404419616446No Hit
ATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCA276640.11843732262122894No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG274890.1176880986674003No Hit
GTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC269610.11542758296670594No Hit
TCCCGTTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCG263400.11276890825054836No Hit
ACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGG261060.1117670887922861No Hit
GCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTC259430.11106924019529142No Hit
TCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAG256670.10988760698811027No Hit
CCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACGCCTCGCG253590.1085689728293719No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC252780.10822218917074267Illumina Single End PCR Primer 1 (100% over 50bp)
GCTCCTTCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAG250470.10723321355168888No Hit
GTGTGCGTACTTCATTGCTCAATTCAATTAAGCTCTCTATTCTTAATTTA250050.10705339980277No Hit
GTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGC247180.10582467251849106No Hit
TCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGG243910.10442469404476556No Hit
TGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCG242530.103833877441175No Hit
CCCTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTCC242520.10382959616143884No Hit
CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG242520.10382959616143884No Hit
GGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATT240760.10307609092787405No Hit
GGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCCCGGC238800.10223696009958598No Hit
GCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCA236690.10133361007525549No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA44600.068.9939652
AGATCGG46200.066.767611
GTCCCGA56550.065.523571
GTATACC300300.065.38943594
AGTTTAC169600.061.99185694
AGAGCGT50500.059.4619069
CATAGTT243050.057.0454394
TTCCCGA58750.055.146161
TTACGAC139300.054.263722
CGGAAGA58100.052.6529925
GTTACGA143050.052.4296261
GGGTAGT99800.051.2669334
TTGCGAC11700.048.585222
ATCCCCA535450.047.60090394
CGTTACG4450.047.5506441
TGTTACG58100.047.31495
GGTGCGT28600.047.022311
TACGACT165650.046.968243
GTACGTA53400.046.1417431
TCGGAAG68000.046.084724