Basic Statistics
Measure | Value |
---|---|
Filename | GF-S1.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13036850 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 579619 | 4.44600497819642 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 161686 | 1.240222906607041 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 83044 | 0.6369943659703072 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 74048 | 0.5679899669015138 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGATCTCGTATG | 48510 | 0.3720990883533982 | TruSeq Adapter, Index 21 (97% over 49bp) |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 44152 | 0.33867076786186845 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 25336 | 0.19434142450055036 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 20728 | 0.15899546286104388 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 17567 | 0.13474880818602653 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 15464 | 0.11861761084924656 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 14874 | 0.11409197774002156 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 19970 | 0.0 | 80.66574 | 6 |
GGGCGCG | 20485 | 0.0 | 78.4313 | 4 |
CGCGGTG | 20855 | 0.0 | 77.220085 | 7 |
CGGGCGC | 21095 | 0.0 | 75.51654 | 3 |
CCGGGCG | 21070 | 0.0 | 74.517456 | 2 |
GGCGCGG | 21705 | 0.0 | 74.391304 | 5 |
CTCCCTC | 74860 | 0.0 | 73.90635 | 94 |
GGGCGAT | 79130 | 0.0 | 73.799446 | 9 |
AGGGCGA | 80475 | 0.0 | 72.57742 | 8 |
GAGGGCG | 81935 | 0.0 | 71.26122 | 7 |
GATCGGA | 10055 | 0.0 | 70.28364 | 2 |
AGATCGG | 10180 | 0.0 | 69.55312 | 1 |
CGGTGGC | 23550 | 0.0 | 68.50321 | 9 |
ATGTGAG | 83480 | 0.0 | 68.412445 | 3 |
GCGGTGG | 23590 | 0.0 | 68.32703 | 8 |
GTGAGGG | 85410 | 0.0 | 68.27669 | 5 |
TGAGGGC | 85560 | 0.0 | 68.25302 | 6 |
GCCGGGC | 23410 | 0.0 | 67.04722 | 1 |
GATGTGA | 83170 | 0.0 | 66.42655 | 2 |
TGTGAGG | 87845 | 0.0 | 66.33056 | 4 |