Basic Statistics
Measure | Value |
---|---|
Filename | GF-S9.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24742381 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1290394 | 5.215318606564178 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 221186 | 0.8939560020517023 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 155719 | 0.629361418369558 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 98774 | 0.399209760774438 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 82257 | 0.3324538572096194 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 82071 | 0.3317021106416557 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATG | 79439 | 0.321064492540148 | TruSeq Adapter, Index 2 (97% over 36bp) |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCTAGCTACTCGGGAGGCTGAG | 75208 | 0.3039642789430815 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 63161 | 0.2552745428986806 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 42149 | 0.17035143060807284 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 34685 | 0.14018456833236867 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 29198 | 0.11800804457743981 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 27080 | 0.10944783365836941 | No Hit |
ATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTAT | 27043 | 0.10929829267441965 | No Hit |
ATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTC | 24883 | 0.10056833253032518 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 36475 | 0.0 | 81.04897 | 6 |
CGCGGTG | 38465 | 0.0 | 76.868095 | 7 |
CTCCCTC | 163555 | 0.0 | 75.80026 | 94 |
GGGCGAT | 178240 | 0.0 | 74.15486 | 9 |
AGGGCGA | 179820 | 0.0 | 73.448715 | 8 |
GAGGGCG | 181190 | 0.0 | 72.898544 | 7 |
ATGTGAG | 178670 | 0.0 | 72.34301 | 3 |
TGAGGGC | 184385 | 0.0 | 71.602234 | 6 |
GTGAGGG | 184000 | 0.0 | 71.59011 | 5 |
CGGGCGC | 41765 | 0.0 | 70.45463 | 3 |
GATGTGA | 180250 | 0.0 | 69.30431 | 2 |
GGATGTG | 180610 | 0.0 | 69.178085 | 1 |
GATCGGA | 15745 | 0.0 | 68.215836 | 2 |
GGGCGCG | 44120 | 0.0 | 67.25907 | 4 |
TGTGAGG | 195900 | 0.0 | 67.236145 | 4 |
AGATCGG | 15990 | 0.0 | 67.20244 | 1 |
GCGGTGG | 44080 | 0.0 | 67.0978 | 8 |
CCGGGCG | 43570 | 0.0 | 66.79505 | 2 |
CGGTGGC | 44410 | 0.0 | 66.67301 | 9 |
GGCGCGG | 46790 | 0.0 | 63.481747 | 5 |