Basic Statistics
Measure | Value |
---|---|
Filename | GF-S4.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20971509 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 622440 | 2.968026764311524 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 145491 | 0.693755513730557 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 122883 | 0.5859521124588603 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 59175 | 0.2821685363699865 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 58066 | 0.27688040951178094 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATG | 42759 | 0.20389090742111118 | TruSeq Adapter, Index 22 (97% over 37bp) |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 37906 | 0.18074998799561826 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 36484 | 0.1739693600493889 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 30424 | 0.14507301310554238 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 27161 | 0.12951380847224678 | No Hit |
TATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTA | 21467 | 0.1023626864428306 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 16480 | 0.0 | 77.19013 | 6 |
GGGCGAT | 83935 | 0.0 | 76.43299 | 9 |
AGGGCGA | 86345 | 0.0 | 74.272964 | 8 |
GAGGGCG | 87980 | 0.0 | 72.85548 | 7 |
CGCGGTG | 18015 | 0.0 | 70.61318 | 7 |
GTGAGGG | 92410 | 0.0 | 69.300354 | 5 |
ATGTGAG | 90300 | 0.0 | 69.25099 | 3 |
TGAGGGC | 93090 | 0.0 | 68.90653 | 6 |
GGGCGCG | 18985 | 0.0 | 67.13585 | 4 |
GATGTGA | 90460 | 0.0 | 66.86023 | 2 |
CTAATCC | 21760 | 0.0 | 65.887 | 2 |
CTCCCTC | 91805 | 0.0 | 65.775345 | 94 |
GGATGTG | 92175 | 0.0 | 65.61299 | 1 |
ACTAATC | 22155 | 0.0 | 64.749405 | 1 |
TGTGAGG | 100665 | 0.0 | 63.560097 | 4 |
CGGGCGC | 20390 | 0.0 | 61.909817 | 3 |
CCGGGCG | 20240 | 0.0 | 60.931614 | 2 |
GGCGCGG | 20965 | 0.0 | 60.841373 | 5 |
ATCCTAG | 23755 | 0.0 | 60.766567 | 5 |
GATCGGA | 10470 | 0.0 | 59.231796 | 2 |