Basic Statistics
Measure | Value |
---|---|
Filename | CON-S11.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25603258 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 388429 | 1.5171077055896558 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 171653 | 0.6704342080214948 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 103871 | 0.40569446279063387 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 62212 | 0.24298470140011086 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 51047 | 0.19937696991531312 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 44960 | 0.17560265181876464 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 41388 | 0.16165130234597486 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 38673 | 0.1510471831358337 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 35701 | 0.1394392854221912 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 32215 | 0.12582383070154587 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 31789 | 0.12415997995255135 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 28984 | 0.11320434297853812 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 28760 | 0.11232945432178984 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 14950 | 0.0 | 75.73851 | 2 |
AGATCGG | 15395 | 0.0 | 73.437614 | 1 |
ATCGGAA | 15825 | 0.0 | 71.17106 | 3 |
AGAGCGT | 17040 | 0.0 | 65.1929 | 9 |
AAGAGCG | 17935 | 0.0 | 62.14959 | 8 |
CGGAAGA | 20740 | 0.0 | 55.378498 | 5 |
TCGGAAG | 21700 | 0.0 | 53.613403 | 4 |
CGTCTGG | 12505 | 0.0 | 52.688793 | 1 |
GTATACC | 88155 | 0.0 | 50.602047 | 94 |
CGCCGTA | 13225 | 0.0 | 40.5274 | 46-47 |
CGTGTCT | 11470 | 0.0 | 39.115486 | 1 |
CGTATCA | 13885 | 0.0 | 37.74587 | 50-51 |
GTCGCCG | 14535 | 0.0 | 36.906136 | 44-45 |
GCCGTAT | 14315 | 0.0 | 36.67291 | 48-49 |
CCGTATC | 14625 | 0.0 | 36.61862 | 48-49 |
GGTCGCC | 14635 | 0.0 | 35.88331 | 44-45 |
TCGCCGT | 14535 | 0.0 | 35.791653 | 46-47 |
GAGCGTC | 16260 | 0.0 | 34.347664 | 10-11 |
TCGTGTA | 16110 | 0.0 | 34.245064 | 14-15 |
TGGTCGC | 15900 | 0.0 | 33.589672 | 42-43 |