Basic Statistics
Measure | Value |
---|---|
Filename | GFR-S9.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24320429 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 427431 | 1.757497780980755 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 173463 | 0.7132398856944505 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63830 | 0.26245425193774335 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 62477 | 0.2568910277034998 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 61213 | 0.25169375096138313 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 52380 | 0.21537449031018324 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 48630 | 0.19995535440596054 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 45944 | 0.18891114132896258 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 45600 | 0.18749669259534854 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 43013 | 0.1768595447062221 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 35030 | 0.1440352881933127 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 33273 | 0.13681090905098753 | No Hit |
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | 32894 | 0.13525254838226744 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 29966 | 0.12321328706825033 | No Hit |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 24339 | 0.10007635967276729 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 10280 | 0.0 | 68.73863 | 2 |
AGATCGG | 10740 | 0.0 | 66.01895 | 1 |
ATCGGAA | 10815 | 0.0 | 65.0407 | 3 |
AGAGCGT | 12385 | 0.0 | 56.227562 | 9 |
AAGAGCG | 12655 | 0.0 | 55.80767 | 8 |
GTATACC | 91745 | 0.0 | 53.87802 | 94 |
CGTCTGG | 12700 | 0.0 | 52.72236 | 1 |
CGGAAGA | 14940 | 0.0 | 48.722054 | 5 |
TCGGAAG | 17030 | 0.0 | 42.793884 | 4 |
CGTGTCT | 11695 | 0.0 | 41.78465 | 1 |
CGCCGTA | 9035 | 0.0 | 36.851162 | 46-47 |
CGTATCA | 9210 | 0.0 | 35.239395 | 50-51 |
GTCTGGA | 131400 | 0.0 | 33.642296 | 1 |
GTCGCCG | 10065 | 0.0 | 33.54587 | 44-45 |
GGTCGCC | 10030 | 0.0 | 32.749325 | 44-45 |
GGAGTCT | 151895 | 0.0 | 32.638767 | 5 |
GAGTCTT | 153070 | 0.0 | 32.442284 | 6 |
AGTCTTG | 153780 | 0.0 | 32.19936 | 7 |
TGGAGTC | 152255 | 0.0 | 32.157383 | 4 |
GCCGTAT | 10070 | 0.0 | 32.109585 | 48-49 |