FastQCFastQC Report
Thu 29 Mar 2018
CON-P3.f.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-P3.f.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25826399
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG10918594.227685787708925No Hit
CAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTG2671971.0345886780421847No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2357920.9129882954259322No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA1822440.7056500598476776No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA947860.3670120638963256No Hit
TTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTT877460.33975313399285745No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT614010.23774510724472275No Hit
GTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC564270.21848574398622123No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA551720.2136263750900774No Hit
AAAGGTTTGGTCCTGGCCTTATAATTAATTAGAGGTAAAATTACACATGC521360.20187096156920678No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC481550.18645650134964614No Hit
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG460800.17842208664088244No Hit
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC395240.15303720816827773No Hit
AACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAA366440.1418858277532226No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATA334180.1293947328855254No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA302590.11716306249276176No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT290440.11245857388016037No Hit
GGACAGCTCTTCTGGAACGGAAAAAACCTTTAATAGTGAATAATTAACAA265640.10285599630052954No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGT272000.086.462026
CAACACG309900.084.498431
AACACGG317900.082.455642
ACACGGG320900.081.7287453
ATGTGAG1307150.079.979373
CGCGGTG295200.079.721827
GTGAGGG1340600.079.5478745
GAGGGCG1342300.079.547437
TGAGGGC1341500.079.517926
GGATGTG1351200.077.3763661
ACGGGAA344350.077.105195
CACGGGA357550.074.061414
GCGGTGG320000.073.6172268
CGGGAAA360950.073.567896
TGTGAGG1463550.072.804184
GGGCGAT1470350.072.6282969
GTTGATC258350.069.9757
CTCCCTC1391300.069.7873394
AGGGCGA1554050.068.708958
CGGTGGC351600.067.029189