FastQCFastQC Report
Thu 29 Mar 2018
GF-S7.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-S7.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21992041
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT4910852.2330123884363435No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC2062930.9380348099569293No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT670540.3049012140346592No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC561130.2551513977261137No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC506740.23041972320804605No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA433630.197175878309794No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA425420.1934427095693392No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG424340.19295162281663625No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC358630.16307263159431176No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA352790.16041712545006623No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT340680.15491058788040638No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG267570.12166674298215432No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC249440.11342285147613175Illumina Single End PCR Primer 1 (100% over 50bp)
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC221690.10080465019140335No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATACC893350.060.2638494
GATCGGA51900.055.673782
CGTCTGG115050.051.2186281
ATCGGAA57250.050.065413
AGATCGG58700.048.8324781
CGTGTCT108300.040.8298871
AGAGCGT69650.039.2635239
AAGAGCG73800.037.947078
GTCTGGA1367700.036.484621
GGAGTCT1536950.035.07455
GAGTCTT1548700.034.8680426
AGTCTTG1554450.034.625147
TGGAGTC1549850.034.591594
TCTGGAG1455200.034.4367262
CTGGAGT1606400.032.985523
CGGAAGA92600.032.4773835
GTCTTGG1684450.032.129758
CGCCGTA39950.031.7024746-47
TCTTGGA1719800.031.4911179
CGTATCA41900.030.06360450-51