FastQCFastQC Report
Thu 29 Mar 2018
GF-P4.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGF-P4.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25345776
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT3646311.438626302071004No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC1639750.6469519812689893No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT827870.32663036239253435No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC603490.23810279077665641Illumina Single End PCR Primer 1 (100% over 50bp)
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC482630.1904183166457401No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA454690.17939478357261582No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC367090.1448328115895919No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA323970.12782011487831346No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG311560.12292383551405174No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT268710.10601766542874837No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA261240.10307042877677132No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC256310.10112533149507831No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA101200.068.574872
AGATCGG105850.065.223641
ATCGGAA107050.064.130493
GTATACC685650.058.32446794
AGAGCGT117550.056.4082039
AAGAGCG126000.053.8565868
CGTCTGG104100.047.9781651
CGGAAGA148650.047.075245
TCGGAAG157000.044.984244
CGCCGTA83700.037.95559746-47
CGTATCA89050.034.83674250-51
GTCTGGA1113950.033.8424531
GGAGTCT1223200.033.1224865
GAGTCTT1230200.032.9520536
AGTCTTG1244000.032.4767767
GTCGCCG98400.032.4520544-45
GGTCGCC96150.032.16061844-45
TGGAGTC1246400.032.1356434
CGTGTCT101300.032.0803031
TCGCCGT97350.031.40262646-47