FastQCFastQC Report
Thu 29 Mar 2018
CON-P4.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-P4.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21968673
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT4623712.1046833370408855No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC2024450.9215167434100366No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA705480.32113000179847No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC701780.3194457853690116Illumina Single End PCR Primer 1 (100% over 50bp)
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC608440.2769580119837006No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT576360.2623554003466664No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC498260.22680477787620584No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA422370.1922601333271245No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG409080.1862106099899616No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC387950.1765923685968652No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA334540.15228047684081783No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG318100.14479709357046738No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT284290.1294069969542539No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG269970.12288862417862018No Hit
TGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG247100.11247834587004868No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG245240.11163168571902363No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA106250.072.4334952
ATCGGAA109750.069.573353
AGATCGG111550.069.395351
AGAGCGT123700.060.896669
AAGAGCG127200.059.7392128
GTATACC850900.058.38154294
CGTCTGG109350.052.9861031
CGGAAGA148100.052.7407345
TCGGAAG161750.049.2406044
CGTGTCT104350.043.4464871
CGCCGTA91350.039.51031546-47
CGTATCA95050.036.89098450-51
GTCTGGA1303300.035.475081
GTCGCCG105250.034.76017844-45
CCGTATC104350.034.6123148-49
GCCGTAT101800.034.48672548-49
GGAGTCT1458750.034.292115
GAGTCTT1465750.034.2064066
AGTCTTG1470500.033.993277
TGGAGTC1460250.033.9680144