Basic Statistics
Measure | Value |
---|---|
Filename | GF-S2.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30963933 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1695529 | 5.475819237820984 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 450482 | 1.4548604016162934 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 119122 | 0.38471211005397793 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 109395 | 0.3532981420674176 | No Hit |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 89467 | 0.28893939280904657 | No Hit |
TGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGG | 72323 | 0.23357174942860134 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 57327 | 0.1851412092901764 | No Hit |
GTATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 54532 | 0.17611457820942836 | No Hit |
GGGAGAGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTT | 50797 | 0.16405215706932322 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 45671 | 0.14749741255414808 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 41999 | 0.13563845393929772 | No Hit |
GGACAGCTCTTCTGGAACGGAAAAAACCTTTAATAGTGAATAATTAACAA | 35234 | 0.1137904542036052 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGATCTCGTATG | 33880 | 0.10941762469257378 | TruSeq Adapter, Index 22 (97% over 49bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 52120 | 0.0 | 85.543594 | 6 |
GGGCGAT | 212170 | 0.0 | 82.01159 | 9 |
CGCGGTG | 55050 | 0.0 | 81.11023 | 7 |
AGGGCGA | 215880 | 0.0 | 80.56313 | 8 |
GGGCGCG | 55750 | 0.0 | 80.403275 | 4 |
GAGGGCG | 218440 | 0.0 | 79.60391 | 7 |
ATGTGAG | 216505 | 0.0 | 78.55187 | 3 |
GTGAGGG | 223315 | 0.0 | 77.67697 | 5 |
TGAGGGC | 224395 | 0.0 | 77.44937 | 6 |
CCGGGCG | 57785 | 0.0 | 76.103294 | 2 |
GGCGCGG | 59110 | 0.0 | 75.76273 | 5 |
GATGTGA | 218075 | 0.0 | 75.47186 | 2 |
CGGGCGC | 59670 | 0.0 | 74.648026 | 3 |
GGATGTG | 221380 | 0.0 | 74.346634 | 1 |
CTCCCTC | 223070 | 0.0 | 73.4273 | 94 |
TGTGAGG | 239800 | 0.0 | 72.40434 | 4 |
GCGGTGG | 62435 | 0.0 | 71.561424 | 8 |
CGGTGGC | 62860 | 0.0 | 71.05505 | 9 |
GCCGGGC | 74615 | 0.0 | 58.978806 | 1 |
CTATGCC | 76840 | 0.0 | 58.09082 | 94 |