Basic Statistics
Measure | Value |
---|---|
Filename | CON-S5.f.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24212986 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 1087025 | 4.489429763020554 | No Hit |
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 273082 | 1.1278328083946358 | No Hit |
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 198521 | 0.8198947457368537 | No Hit |
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 107400 | 0.44356363151574946 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAATCTCGTATG | 96259 | 0.3975511322725747 | TruSeq Adapter, Index 15 (97% over 49bp) |
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC | 82737 | 0.3417050668595769 | No Hit |
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG | 40285 | 0.16637766197031625 | No Hit |
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA | 36665 | 0.15142700697881709 | No Hit |
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA | 34829 | 0.1438442990881009 | No Hit |
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT | 32966 | 0.13615008078722715 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 33600 | 0.0 | 79.21153 | 6 |
CGCGGTG | 35280 | 0.0 | 75.497185 | 7 |
GGGCGCG | 35340 | 0.0 | 75.381714 | 4 |
CGGGCGC | 35895 | 0.0 | 73.65274 | 3 |
CCGGGCG | 36285 | 0.0 | 72.09703 | 2 |
CTCCCTC | 136575 | 0.0 | 71.14331 | 94 |
GATCGGA | 17870 | 0.0 | 70.97358 | 2 |
AGATCGG | 18085 | 0.0 | 70.116486 | 1 |
GGCGCGG | 38245 | 0.0 | 69.901726 | 5 |
GGGCGAT | 152065 | 0.0 | 69.552246 | 9 |
AGGGCGA | 155305 | 0.0 | 68.12072 | 8 |
GAGGGCG | 158710 | 0.0 | 66.6797 | 7 |
CGGTGGC | 40800 | 0.0 | 65.38842 | 9 |
GCGGTGG | 40945 | 0.0 | 65.132286 | 8 |
ATGTGAG | 159745 | 0.0 | 64.84598 | 3 |
TGAGGGC | 164740 | 0.0 | 64.280815 | 6 |
GTGAGGG | 164925 | 0.0 | 64.229 | 5 |
GATGTGA | 163700 | 0.0 | 63.276684 | 2 |
GCCGGGC | 41490 | 0.0 | 62.95581 | 1 |
TGTGAGG | 169515 | 0.0 | 62.390022 | 4 |