FastQCFastQC Report
Thu 29 Mar 2018
CON-S3.r.slx.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCON-S3.r.slx.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24229804
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT5939082.4511465301163806No Hit
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC2697521.1133065707011085No Hit
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC876020.36154646566682913No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA644270.2658997984465743No Hit
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC635500.26228028918434504No Hit
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA602200.248536884574056No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC573580.23672498547656434Illumina Single End PCR Primer 1 (100% over 50bp)
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC542120.223740976196093No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG471540.19461156185993084No Hit
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA445930.1840419344704563No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG392140.16184200251888128No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT387050.15974128391628756No Hit
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT366770.1513714266941656No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG345290.1425063116482494No Hit
AGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC293450.12111117366033998No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG280750.1158696950251847No Hit
GCCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT272300.1123822545159672No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA91800.069.043642
AGATCGG96650.065.788781
ATCGGAA97150.065.100123
CGTCTGG154400.059.4274331
GTATACC1106050.057.567994
AGAGCGT108100.057.5576139
AAGAGCG111900.055.9809888
CGGAAGA143400.045.6185345
CGTGTCT131750.045.4060251
TCGGAAG152450.043.1499374
CGCCGTA77850.038.21248646-47
CGTATCA81700.035.58303550-51
GTCTGGA1673800.034.7935941
GGAGTCT1893000.033.834885
GAGTCTT1906450.033.6489836
TGGAGTC1888800.033.566194
GTCGCCG90450.033.56439244-45
AGTCTTG1910600.033.5168657
TCTGGAG1784500.032.99052
GGTCGCC91750.032.4485644-45