Basic Statistics
Measure | Value |
---|---|
Filename | GF-S2.r.slx.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30963933 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 654455 | 2.1136042375495387 | No Hit |
GTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGAC | 300934 | 0.9718855805559325 | No Hit |
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA | 89091 | 0.28772507678530373 | No Hit |
GCCTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTAT | 81628 | 0.26362284145234394 | No Hit |
CGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 68548 | 0.22138014573277887 | No Hit |
TGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACC | 63363 | 0.20463485694792066 | No Hit |
CGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 55214 | 0.17831714078440875 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 49351 | 0.15938220768014194 | No Hit |
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAT | 46993 | 0.15176689602060567 | No Hit |
TGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGA | 44489 | 0.14368006803270114 | No Hit |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 36866 | 0.11906110247687203 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG | 35590 | 0.1149401789494894 | No Hit |
GGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATT | 35268 | 0.11390025937596494 | No Hit |
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAG | 32400 | 0.10463787013103276 | No Hit |
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTGAGAGC | 31141 | 0.10057184918982999 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATACC | 113050 | 0.0 | 63.320404 | 94 |
GATCGGA | 8055 | 0.0 | 52.905 | 2 |
AGATCGG | 8750 | 0.0 | 48.97907 | 1 |
ATCGGAA | 8765 | 0.0 | 48.142254 | 3 |
CGTCTGG | 15565 | 0.0 | 46.49383 | 1 |
AGAGCGT | 9910 | 0.0 | 42.29431 | 9 |
CGTGTCT | 15350 | 0.0 | 40.379425 | 1 |
GTCTGGA | 187565 | 0.0 | 35.879406 | 1 |
GGAGTCT | 205750 | 0.0 | 34.988346 | 5 |
AAGAGCG | 12145 | 0.0 | 34.97526 | 8 |
GAGTCTT | 207815 | 0.0 | 34.66834 | 6 |
AGTCTTG | 208225 | 0.0 | 34.567005 | 7 |
TGGAGTC | 208470 | 0.0 | 34.278687 | 4 |
CGTTCGA | 3520 | 0.0 | 33.505886 | 8 |
TCTGGAG | 201980 | 0.0 | 33.457703 | 2 |
GTCTTGG | 221410 | 0.0 | 32.661148 | 8 |
CGCCGTA | 6180 | 0.0 | 32.54524 | 46-47 |
CTGGAGT | 218825 | 0.0 | 32.36073 | 3 |
CGGAAGA | 13895 | 0.0 | 31.959951 | 5 |
TCTTGGA | 227920 | 0.0 | 31.76336 | 9 |