CON-S5.f.slx.gz FastQC Report

Basic Statistics

Measure	Value
Filename	CON-S5.f.slx.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24212986
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG	1087025	4.489429763020554	No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG	273082	1.1278328083946358	No Hit
GGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA	198521	0.8198947457368537	No Hit
TGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA	107400	0.44356363151574946	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAATCTCGTATG	96259	0.3975511322725747	TruSeq Adapter, Index 15 (97% over 49bp)
ATGACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACC	82737	0.3417050668595769	No Hit
CCTATGTTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGG	40285	0.16637766197031625	No Hit
ACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATATAAA	36665	0.15142700697881709	No Hit
CGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCA	34829	0.1438442990881009	No Hit
ATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAAT	32966	0.13615008078722715	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	33600	79.21153	6
CGCGGTG	35280	75.497185	7
GGGCGCG	35340	75.381714	4
CGGGCGC	35895	73.65274	3
CCGGGCG	36285	72.09703	2
CTCCCTC	136575	71.14331	94
GATCGGA	17870	70.97358	2
AGATCGG	18085	70.116486	1
GGCGCGG	38245	69.901726	5
GGGCGAT	152065	69.552246	9
AGGGCGA	155305	68.12072	8
GAGGGCG	158710	66.6797	7
CGGTGGC	40800	65.38842	9
GCGGTGG	40945	65.132286	8
ATGTGAG	159745	64.84598	3
TGAGGGC	164740	64.280815	6
GTGAGGG	164925	64.229	5
GATGTGA	163700	63.276684	2
GCCGGGC	41490	62.95581	1
TGTGAGG	169515	62.390022	4