<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.1 20151215//EN"  "JATS-archivearticle1.dtd"><article article-type="discussion" dtd-version="1.1" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:xlink="http://www.w3.org/1999/xlink"><front><journal-meta><journal-id journal-id-type="nlm-ta">elife</journal-id><journal-id journal-id-type="publisher-id">eLife</journal-id><journal-title-group><journal-title>eLife</journal-title></journal-title-group><issn pub-type="epub" publication-format="electronic">2050-084X</issn><publisher><publisher-name>eLife Sciences Publications, Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">43514</article-id><article-id pub-id-type="doi">10.7554/eLife.43514</article-id><article-categories><subj-group subj-group-type="display-channel"><subject>Feature article</subject></subj-group><subj-group subj-group-type="heading"><subject>Computational and Systems Biology</subject></subj-group><subj-group subj-group-type="heading"><subject>Genetics and Genomics</subject></subj-group><subj-group subj-group-type="sub-display-channel"><subject>Point of View</subject></subj-group></article-categories><title-group><article-title>Hypothesis, analysis and synthesis, it's all Greek to me</article-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes" id="author-127049"><name><surname>Iliopoulos</surname><given-names>Ioannis</given-names></name><email>iliopj@med.uoc.gr</email><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="con1"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="fn1">†</xref><bio><p><bold>Ioannis Iliopoulos</bold> is in the Division of Basic Sciences, School of Medicine, University of Crete, Heraklion, Greece.</p></bio></contrib><contrib contrib-type="author" id="author-127050"><name><surname>Ananiadou</surname><given-names>Sophia</given-names></name><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="fn" rid="con2"/><xref ref-type="fn" rid="conf1"/><bio><p><bold>Sophia Ananiadou</bold> is in the School of Computer Science, University of Manchester, Manchester, United Kingdom.</p></bio></contrib><contrib contrib-type="author" id="author-50427"><name><surname>Danchin</surname><given-names>Antoine</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-6350-5001</contrib-id><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con3"/><xref ref-type="fn" rid="conf1"/><bio><p><bold>Antoine Danchin</bold> is in the Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, Paris, France, and the School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, University of Hong Kong, SAR Hong Kong, China</p></bio></contrib><contrib contrib-type="author" id="author-97793"><name><surname>Ioannidis</surname><given-names>John PA</given-names></name><xref ref-type="aff" rid="aff5">5</xref><xref ref-type="fn" rid="con4"/><xref ref-type="fn" rid="conf1"/><bio><p><bold>John PA Ioannidis</bold> is in the Meta-Research Innovation Center at Stanford, Stanford University, Stanford, United States.</p></bio></contrib><contrib contrib-type="author" id="author-127051"><name><surname>Katsikis</surname><given-names>Peter D</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0001-7690-5218</contrib-id><xref ref-type="aff" rid="aff6">6</xref><xref ref-type="fn" rid="con5"/><xref ref-type="fn" rid="conf1"/><bio><p><bold>Peter D Katsikis</bold> is in the Department of Immunology, Erasmus University Medical Center, Rotterdam, The Netherlands</p></bio></contrib><contrib contrib-type="author" corresp="yes" id="author-125395"><name><surname>Ouzounis</surname><given-names>Christos A</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-0086-8657</contrib-id><email>ouzounis@certh.gr</email><xref ref-type="aff" rid="aff7">7</xref><xref ref-type="fn" rid="con6"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="fn1">†</xref><bio><p><bold>Christos A Ouzounis</bold> is in the Biological Computation &amp; Process Lab, Chemical Process &amp; Energy Resources Institute, Centre for Research &amp; Technology Hellas, Thessalonica, Greece.</p></bio></contrib><contrib contrib-type="author" corresp="yes" id="author-127052"><name><surname>Promponas</surname><given-names>Vasilis J</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0003-3352-4831</contrib-id><email>vprobon@ucy.ac.cy</email><xref ref-type="aff" rid="aff8">8</xref><xref ref-type="fn" rid="con7"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="fn1">†</xref><bio><p><bold>Vasilis J Promponas</bold> is in the Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus.</p></bio></contrib><aff id="aff1"><label>1</label><institution content-type="dept">Division of Basic Sciences, School of Medicine</institution><institution>University of Crete</institution><addr-line><named-content content-type="city">Heraklion</named-content></addr-line><country>Greece</country></aff><aff id="aff2"><label>2</label><institution content-type="dept">School of Computer Science</institution><institution>University of Manchester</institution><addr-line><named-content content-type="city">Manchester</named-content></addr-line><country>United Kingdom</country></aff><aff id="aff3"><label>3</label><institution content-type="dept">Institute of Cardiometabolism and Nutrition</institution><institution>Hôpital de la Pitié-Salpêtrière</institution><addr-line><named-content content-type="city">Paris</named-content></addr-line><country>France</country></aff><aff id="aff4"><label>4</label><institution content-type="dept">School of Biomedical Sciences, Li Ka Shing Faculty of Medicine</institution><institution>University of Hong Kong</institution><addr-line><named-content content-type="city">SAR Hong Kong</named-content></addr-line><country>China</country></aff><aff id="aff5"><label>5</label><institution content-type="dept">Meta-Research Innovation Center at Stanford</institution><institution>Stanford University</institution><addr-line><named-content content-type="city">Stanford</named-content></addr-line><country>United States</country></aff><aff id="aff6"><label>6</label><institution content-type="dept">Department of Immunology</institution><institution>Erasmus University Medical Center</institution><addr-line><named-content content-type="city">Rotterdam</named-content></addr-line><country>Netherlands</country></aff><aff id="aff7"><label>7</label><institution content-type="dept">Biological Computation &amp; Process Lab, Chemical Process &amp; Energy Resources Institute</institution><institution>Centre for Research &amp; Technology Hellas</institution><addr-line><named-content content-type="city">Thessalonica</named-content></addr-line><country>Greece</country></aff><aff id="aff8"><label>8</label><institution content-type="dept">Bioinformatics Research Laboratory, Department of Biological Sciences</institution><institution>University of Cyprus</institution><addr-line><named-content content-type="city">Nicosia</named-content></addr-line><country>Cyprus</country></aff></contrib-group><author-notes><fn fn-type="other" id="fn1"><label>†</label><p>Corresponding author</p></fn><fn fn-type="other" id="fn2"><label>‡</label><p>Corresponding author</p></fn><fn fn-type="other" id="fn3"><label>§</label><p>Corresponding author</p></fn></author-notes><pub-date date-type="publication" publication-format="electronic"><day>20</day><month>02</month><year>2019</year></pub-date><pub-date pub-type="collection"><year>2019</year></pub-date><volume>8</volume><elocation-id>e43514</elocation-id><history><date date-type="received" iso-8601-date="2018-11-09"><day>09</day><month>11</month><year>2018</year></date><date date-type="accepted" iso-8601-date="2019-02-05"><day>05</day><month>02</month><year>2019</year></date></history><permissions><copyright-statement>© 2019, Iliopoulos et al</copyright-statement><copyright-year>2019</copyright-year><copyright-holder>Iliopoulos et al</copyright-holder><ali:free_to_read/><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><ali:license_ref>http://creativecommons.org/licenses/by/4.0/</ali:license_ref><license-p>This article is distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use and redistribution provided that the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="elife-43514-v1.pdf"/><abstract><object-id pub-id-type="doi">10.7554/eLife.43514.001</object-id><p>The linguistic foundations of science and technology include many terms that have been borrowed from ancient languages. In the case of terms with origins in the Greek language, the modern meaning can often differ significantly from the original one. Here we use the PubMed database to demonstrate the prevalence of words of Greek origin in the language of modern science, and call for scientists to exercise care when coining new terms.</p></abstract><kwd-group kwd-group-type="author-keywords"><kwd>scientific language</kwd><kwd>etymology</kwd><kwd>history of science</kwd></kwd-group><kwd-group kwd-group-type="research-organism"><title>Research organism</title><kwd>None</kwd></kwd-group><custom-meta-group><custom-meta specific-use="meta-only"><meta-name>Author impact statement</meta-name><meta-value>Many scientific terms have been borrowed from ancient languages, but their modern usage often overlooks their etymology, as do many new terms coined by scientists.</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="s1"><title>Our etymological legacy</title><p>Plato once wrote that <italic>&quot;</italic>the knowledge of names is a great part of knowledge<italic>&quot;</italic> (<xref ref-type="bibr" rid="bib19">Silverman, 1992</xref>). However, it is seldom that scientists or engineers think about the deeper origins of many of the names and words they use in their professional lives. These specialized vocabularies are introduced during high school and university to describe concepts, phenomena, methodologies and techniques, and we grow so accustomed to them that we lose sight of where they came from (<xref ref-type="bibr" rid="bib2">Banay, 1948</xref>; <xref ref-type="bibr" rid="bib1">Askitopoulou et al., 2000</xref>; <xref ref-type="bibr" rid="bib14">Ramoutsaki et al., 2002</xref>; <xref ref-type="bibr" rid="bib3">Danchin, 2010</xref>). For example, the word machine derives from the Greek word 'μηχανή', meaning 'trick', which is quite different from its modern usage. The study of the origins of words is called etymology, which, by the way, is derived from the Greek word 'έτυμος' meaning 'real' and 'genuine'.</p><p>It is widely accepted that the Greek language has provided more of these names and words than any other language (<xref ref-type="bibr" rid="bib5">Flood, 1960</xref>; <xref ref-type="bibr" rid="bib19">Silverman, 1992</xref>; <xref ref-type="bibr" rid="bib15">Russo, 2004</xref>). As scientists and native speakers, we humbly urge our colleagues to delve a little deeper into the etymology of scientific terms of Greek origin and examine their meaning (<xref ref-type="bibr" rid="bib23">Tamis, 2016</xref>). Non-Greek speakers will, we are sure, be surprised by the richness and structure of the Greek language, despite its often inept naturalization in English or other languages, and as a result be better able to understand their own areas of science (<xref ref-type="bibr" rid="bib20">Snell, 1960</xref>; <xref ref-type="bibr" rid="bib10">Montgomery, 2004</xref>). Our favorite example is the word 'analysis': everyone uses it, but few fully understand it. 'Lysis' means 'breaking up', while 'ana-' means 'from bottom to top' but also 'again/repetitively': the subtle yet ingenious latter meaning of the term implies that if you break up something once, you might not know how it works; however, if you break up something twice, you must have reconstructed it, so you must understand the inner workings of the system.</p><p>Many scientific words end with the suffix -ics, such as mathematics, physics and economics. However, these words were initially adjectives, not nouns, so strictly speaking a word like mathematics is incomplete in ancient Greek: the correct term is mathematical philosophy (words that are derived from Greek words meaning 'learnable' and 'love for wisdom' respectively; <xref ref-type="bibr" rid="bib13">Nidditch, 1983</xref>). We are not arguing here that we need to use any scientific words and terms differently: rather, we are asking readers to be aware of the origins of the words they use and to think about these issues when proposing new scientific terms (<xref ref-type="bibr" rid="bib21">Steffanides, 1965</xref>; <xref ref-type="bibr" rid="bib8">Jarvis, 1996</xref>; <xref ref-type="bibr" rid="bib9">Lewis, 2004</xref>; <xref ref-type="bibr" rid="bib26">Welch, 2009</xref>).</p></sec><sec id="s2"><title>Word counts and a way forward</title><p>The PubMed database can be used to get an idea of the prevalence of words of Greek origin in the scientific literature: as of July 28, 2018 PubMed contained records for over 28 million scientific articles. We will focus here on frequently used terms (<xref ref-type="bibr" rid="bib12">Newman et al., 2009</xref>), but that does not mean that the origins and use of other terms are not important. There are 243 distinct words that each appear in more than one million PubMed records (<xref ref-type="supplementary-material" rid="supp1">Supplementary file 1</xref>). However, when we exclude articles (such as 'the'), prepositions (such as 'to' and 'in') and short verb forms (such as 'is' and 'was'), we are left with 172 terms (<xref ref-type="supplementary-material" rid="supp2">Supplementary file 2</xref>), and removing terms with fewer that four characters (such as DNA and other abbreviations), leaves us with 152 terms (<xref ref-type="supplementary-material" rid="supp3">Supplementary file 3</xref>; <xref ref-type="supplementary-material" rid="supp4">Supplementary file 4</xref>). It is worth noting that no single gene or protein name appears in more than one million records (<xref ref-type="bibr" rid="bib16">Seringhaus et al., 2008</xref>). When combined into a disjoint query, using the OR operator, these 152 terms retrieve ~27.8M entries, the majority (~97%) of all PubMed records.</p><p>From this initial dataset, we used <ext-link ext-link-type="uri" xlink:href="https://www.etymonline.com/">etymological dictionaries</ext-link> to identify <ext-link ext-link-type="uri" xlink:href="http://troodos.biol.ucy.ac.cy/Etymology.html">15 terms with Greek origin</ext-link>: analysis, based, clinical, diagnosis, gene, genes, method, period, plasma, protein, proteins, surgery, system, therapy, type. The alert reader will notice that 13 of these words are nouns (with the two exceptions being the words 'clinical' and 'based'). We then constructed a PubMed search for records that contained at least one of the 15 words and it returned more than 23 million records, which is more than 80% of the entire database! We also constructed a PubMed search for records that contained at least one of the 137 non-Greek million-plus words and excluded all 15 words of Greek origin and it returned just 4.7 million records, confirming the prevalence of words of Greek origin in the scientific literature. It should be noted that these searches might underestimate the prevalence of Greek terms because, for example, some of the 137 words (such as mice) might be remotely connected by etymology to Greek words.</p><p>Advances in science mean that there is an ongoing need for new words (also known as neologisms). However, when a scientist attempts to introduce a new name for a new concept or idea, we would like him or her to consider both the origins of the new name as well as how it relates to existing names (<xref ref-type="bibr" rid="bib7">Jackson, 1961</xref>; <xref ref-type="bibr" rid="bib25">Trüper, 1999</xref>). In the field of genomics, the word epigenomics is an example of a new term being introduced in a thoughtful and meaningful way. However, there are many examples of researchers introducing new variations on the word genomics that are sub-optimal: Jonathan Eisen of the University of California, Davis has coined the term #badomics to describe such words.</p><p>A case in point is the term metagenomics, which is the study of genetic material taken from environmental samples. Here the prefix 'meta-' is used in a way that is not consistent with its Greek origins (meta- meaning beyond). Better names might have been endogenomics for the study of environmental samples taken from inside a host organism, and exogenomics for the study of samples taken from the outside (endo- and exo- meaning 'inside' and 'outside' in Greek, respectively). A similar situation might have occurred when looking for a name to describe the search for life elsewhere in the universe: the term exobiology was gradually replaced by astrobiology (<xref ref-type="bibr" rid="bib6">Gargaud et al., 2011</xref>) – possibly because it had to rhyme with astronauts!</p><p>The suffix -some (from 'soma', meaning 'body' in Greek) has been employed in neologisms across the life sciences in recent decades, with varying degrees of success (<xref ref-type="table" rid="table1">Table 1</xref>). Likewise, the suffix -ome (from '-oma', meaning an undefined set in Greek) has been much used (think biome and genome) in recent times. To exemplify the linguistic richness of the Greek language, we explored the use of Greek prepositions to convey additional meaning within genomics. Epigenome (<xref ref-type="bibr" rid="bib11">Murrell et al., 2005</xref>) is an excellent example of a scientific term in which a Greek preposition ('epi'-, meaning 'on top of') is combined with the suffix -genome to make a word that is precise and logically consistent. Other (less well known) examples include antigenome (which is used in immunology; <xref ref-type="bibr" rid="bib17">Sette et al., 2016</xref>), metagenome (<xref ref-type="bibr" rid="bib22">Streit and Schmitz, 2004</xref>), progenome (<xref ref-type="bibr" rid="bib4">Ferreira et al., 2004</xref>), and hypergenome (<xref ref-type="bibr" rid="bib18">Sgaramella, 2013</xref>). We then went on to create new words of this kind (<xref ref-type="table" rid="table2">Table 2</xref>) that, we feel, remain true to their etymological roots while, at the same time, being potentially useful to the scientific community. (The term pangenome (<xref ref-type="bibr" rid="bib24">Tettelin et al., 2005</xref>), meaning the full complement of genes in a clade, is also very useful although, strictly speaking, 'pan-' is not a preposition).</p><table-wrap id="table1" position="float"><object-id pub-id-type="doi">10.7554/eLife.43514.002</object-id><label>Table 1.</label><caption><title>A selection of terms ending with the suffix -some that appear in the scientific literature.</title><p>The term prostasome, which first showed up in PubMed in 1982, appeared in 218 PubMed records as of July 28, 2018. However, other terms ending with -some have proved much less popular.</p></caption><table frame="hsides" rules="groups"><thead><tr><th valign="top">Term</th><th valign="top">Definition</th><th valign="top">Context</th><th valign="top">Number of PubMed records</th><th valign="top">Year of first appearance</th></tr></thead><tbody><tr><td valign="top">catansome</td><td valign="top">catanionic vesicle</td><td valign="top">synthetic biochemistry, surfactants</td><td valign="top">2</td><td valign="top">2008</td></tr><tr><td valign="top">ejectisome</td><td valign="top">extrusive organelle</td><td valign="top">cell biology and physiology</td><td valign="top">16</td><td valign="top">1984</td></tr><tr><td valign="top">histrosome</td><td valign="top">a type of ejectisome</td><td valign="top">cell biology and physiology</td><td valign="top">1</td><td valign="top">2015</td></tr><tr><td valign="top">hyposome</td><td valign="top">cellular structure</td><td valign="top">dDinoflagellate biology</td><td valign="top">7</td><td valign="top">2010</td></tr><tr><td valign="top">prostasome</td><td valign="top">prostate gland vesicle</td><td valign="top">sperm mobility and physiology</td><td valign="top">218</td><td valign="top">1982</td></tr><tr><td valign="top">remosome</td><td valign="top">remodeled nucleosome</td><td valign="top">non-canonical chromatin structure</td><td valign="top">2</td><td valign="top">2010</td></tr></tbody></table></table-wrap><table-wrap id="table2" position="float"><object-id pub-id-type="doi">10.7554/eLife.43514.003</object-id><label>Table 2.</label><caption><title>A selection of terms that combine a Greek preposition and the suffix -genome.</title><p>Some terms that the authors believe could be useful in genome biology.</p></caption><table frame="hsides" rules="groups"><thead><tr><th valign="top">Preposition</th><th valign="top">Term</th><th valign="top">Possible definition/interpretation</th></tr></thead><tbody><tr><td valign="top">ana</td><td valign="top">anagenome</td><td valign="top">could be used to describe usage over time, to monitor population variation</td></tr><tr><td valign="top">amphi</td><td valign="top">amphigenome</td><td valign="top">could be used to describe polyploid genomes, and sex differences</td></tr><tr><td valign="top">apo</td><td valign="top">apogenome</td><td valign="top">could be used to convey non-DNA large scale analysis</td></tr><tr><td valign="top">dia</td><td valign="top">diagenome</td><td valign="top">could be a useful concept for comparative genomics</td></tr><tr><td valign="top">eis</td><td valign="top">eisgenome</td><td valign="top">could be a useful term for substance use</td></tr><tr><td valign="top">ek</td><td valign="top">ecgenome</td><td valign="top">alternative for exo-genomics (see text)</td></tr><tr><td valign="top">en</td><td valign="top">engenome</td><td valign="top">alternative for endo-genomics (see text)</td></tr><tr><td valign="top">kata</td><td valign="top">katagenome</td><td valign="top">could be a vey useful term to describe developmental processes over time</td></tr><tr><td valign="top">para</td><td valign="top">paragenome</td><td valign="top">could be used to describe the genomics of paralogs (although this is not satisfactory from an etymological point of view)</td></tr><tr><td valign="top">peri</td><td valign="top">perigenome</td><td valign="top">could be a very useful term to describe developmental processes over space</td></tr><tr><td valign="top">pros</td><td valign="top">prosgenome</td><td valign="top">could be used to describe synthetic genomes</td></tr><tr><td valign="top">syn</td><td valign="top">syngenome</td><td valign="top">could be used to describe the genomics of symbioses</td></tr><tr><td valign="top">hypo</td><td valign="top">hypogenome</td><td valign="top">could be used to describe a synthetic genome with depleted functions – <italic>as opposed to hyper-genome to describe a synthetic genome with added functions</italic></td></tr></tbody></table></table-wrap></sec><sec id="s3"><title>Conclusion and epilogue</title><p>It is often forgotten that some of humankind's greatest achievements in science, engineering, literature, philosophy, arts and architecture were communicated in Greek, not only in the ancient world but also more recently: the Greek language greatly contributed to the development of the Renaissance, to the French and American Revolutions, and to modern science. Scholars who spoke and wrote in Greek include Newton, Leibniz, Goethe and Wittgenstein, and Greek lives on (alongside Latin) in the taxonomic names devised by Linnaeus, Darwin and others. Perhaps we can still learn something from them, and from scholars in other fields, empowered by the availability of automated translation, online dictionaries and etymology tools. We hope that this contribution will encourage scientists to think about the terminology used in modern science, technology and medicine (<xref ref-type="bibr" rid="bib27">Wulff, 2004</xref>), and to be more careful when seeking to introduce new words and phrases into our vocabulary.</p></sec></body><back><ack id="ack"><title>Acknowledgments</title><p>We thank Ben Blencowe (University of Toronto), Georgios Floros (University of Cyprus), Peter Karp (SRI International), Nikos Kyrpides (JGI Berkeley), Nikolas Papanikolaou (University of Crete), Nikos Sarantakos (European Parliament) and Spyros Sfenthourakis (University of Cyprus) for insightful comments and constructive criticisms on earlier versions of this manuscript.</p></ack><fn-group content-type="author-contribution"><title>Author contributions</title><fn fn-type="con" id="con1"><p>Conceptualization, Resources, Data curation, Software, Formal analysis, Methodology, Writing—original draft, Project administration, Writing—review and editing</p></fn><fn fn-type="con" id="con2"><p>Conceptualization, Resources, Data curation, Software, Formal analysis, Methodology, Writing—original draft, Writing—review and editing</p></fn><fn fn-type="con" id="con3"><p>Conceptualization, Formal analysis, Investigation, Methodology, Writing—review and editing</p></fn><fn fn-type="con" id="con4"><p>Conceptualization, Data curation, Formal analysis, Validation, Methodology, Writing—review and editing</p></fn><fn fn-type="con" id="con5"><p>Conceptualization, Data curation, Validation, Methodology, Writing—review and editing</p></fn><fn fn-type="con" id="con6"><p>Conceptualization, Formal analysis, Validation, Methodology, Writing—review and editing</p></fn><fn fn-type="con" id="con7"><p>Conceptualization, Resources, Data curation, Software, Formal analysis, Methodology, Writing—original draft, Project administration, Writing—review and editing</p></fn></fn-group><fn-group content-type="competing-interest"><title>Competing interests</title><fn fn-type="COI-statement" id="conf1"><p>No competing interests declared</p></fn></fn-group><sec id="s4" sec-type="supplementary-material"><title>Additional files</title><supplementary-material id="supp1"><object-id pub-id-type="doi">10.7554/eLife.43514.004</object-id><label>Supplementary file 1.</label><caption><title>The 243 words that appear in at least one million PubMed records.</title></caption><media mime-subtype="plain" mimetype="text" xlink:href="elife-43514-supp1-v1.txt"/></supplementary-material><supplementary-material id="supp2"><object-id pub-id-type="doi">10.7554/eLife.43514.005</object-id><label>Supplementary file 2.</label><caption><title>The 172 words with rich meaning (nouns, adjectives and verb forms) that appear in at least one million PubMed records. A part-of-speech tagger was used to classify the words under consideration (<ext-link ext-link-type="uri" xlink:href="https://cst.dk/tools/index.php">https://cst.dk/tools/index.php</ext-link>).</title></caption><media mime-subtype="plain" mimetype="text" xlink:href="elife-43514-supp2-v1.txt"/></supplementary-material><supplementary-material id="supp3"><object-id pub-id-type="doi">10.7554/eLife.43514.006</object-id><label>Supplementary file 3.</label><caption><title>The 152 words with rich meaning and four or more characters that appear in at least one million PubMed records.</title></caption><media mime-subtype="plain" mimetype="text" xlink:href="elife-43514-supp3-v1.txt"/></supplementary-material><supplementary-material id="supp4"><object-id pub-id-type="doi">10.7554/eLife.43514.007</object-id><label>Supplementary file 4.</label><caption><title>A search string containing the 152 words with rich meaning and four or more characters that appear in at least one million PubMed records. The search that excludes the 15 Greek terms is generated automatically at the following URL: <ext-link ext-link-type="uri" xlink:href="https://tinyurl.com/y7kflbcb">https://tinyurl.com/y7kflbcb</ext-link></title></caption><media mime-subtype="plain" mimetype="text" xlink:href="elife-43514-supp4-v1.txt"/></supplementary-material></sec><sec id="s5" sec-type="data-availability"><title>Data availability</title><p>The supplementary files for this paper and other related information is available at: <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.5493133.v2">https://doi.org/10.6084/m9.figshare.5493133.v2</ext-link>. Etymology of the select terms of Greek origin: <ext-link ext-link-type="uri" xlink:href="http://troodos.biol.ucy.ac.cy/Etymology.html">http://troodos.biol.ucy.ac.cy/Etymology.html</ext-link>.</p></sec><ref-list><title>References</title><ref id="bib1"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Askitopoulou</surname> <given-names>H</given-names></name><name><surname>Ramoutsaki</surname> <given-names>IA</given-names></name><name><surname>Konsolaki</surname> <given-names>E</given-names></name></person-group><year iso-8601-date="2000">2000</year><article-title>Analgesia and anesthesia: etymology and literary history of related Greek words</article-title><source>Anesthesia &amp; Analgesia</source><volume>91</volume><elocation-id>486</elocation-id><pub-id pub-id-type="pmid">10910873</pub-id></element-citation></ref><ref id="bib2"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Banay</surname> <given-names>GL</given-names></name></person-group><year iso-8601-date="1948">1948</year><article-title>An introduction to medical terminology I. Greek and Latin derivations</article-title><source>Bulletin of the Medical Library Association</source><volume>36</volume><elocation-id>1</elocation-id><pub-id pub-id-type="pmid">16016791</pub-id></element-citation></ref><ref id="bib3"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Danchin</surname> <given-names>A</given-names></name></person-group><year iso-8601-date="2010">2010</year><article-title>Les langues de la découverte scientifique</article-title><source>L'Archicube</source><volume>9</volume><elocation-id>48</elocation-id></element-citation></ref><ref id="bib4"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ferreira</surname> <given-names>R</given-names></name><name><surname>Pontes</surname> <given-names>FJ</given-names></name><name><surname>de Barros Neto</surname> <given-names>B</given-names></name><name><surname>Farias</surname> <given-names>PM</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>Do older taxa have older proteins?</article-title><source>Zeitschrift für Naturforschung C</source><volume>59</volume><fpage>454</fpage><lpage>458</lpage><pub-id pub-id-type="doi">10.1515/znc-2004-5-629</pub-id><pub-id pub-id-type="pmid">18998418</pub-id></element-citation></ref><ref id="bib5"><element-citation publication-type="book"><person-group person-group-type="author"><name><surname>Flood</surname> <given-names>WE</given-names></name></person-group><year iso-8601-date="1960">1960</year><source>Scientific Words: Their Structure and Meaning</source><publisher-loc>London</publisher-loc><publisher-name>Oldbourne</publisher-name></element-citation></ref><ref id="bib6"><element-citation publication-type="book"><person-group person-group-type="author"><name><surname>Gargaud</surname> <given-names>M</given-names></name><name><surname>López-García</surname> <given-names>P</given-names></name><name><surname>Martin</surname> <given-names>H</given-names></name></person-group><year iso-8601-date="2011">2011</year><source>Origins and Evolution of Life: An Astrobiological Perspective</source><publisher-loc>Cambridge</publisher-loc><publisher-name>Cambridge University Press</publisher-name></element-citation></ref><ref id="bib7"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Jackson</surname> <given-names>DM</given-names></name></person-group><year iso-8601-date="1961">1961</year><article-title>Hellenomania-hellenophobia</article-title><source>Lancet</source><volume>2</volume><elocation-id>541</elocation-id><pub-id pub-id-type="pmid">13718475</pub-id></element-citation></ref><ref id="bib8"><element-citation publication-type="web"><person-group person-group-type="author"><name><surname>Jarvis</surname> <given-names>WT</given-names></name></person-group><year iso-8601-date="1996">1996</year><article-title>Misuse of the term 'allopathy'</article-title><ext-link ext-link-type="uri" xlink:href="https://www.ncahf.org/articles/a-b/allopathy.html">https://www.ncahf.org/articles/a-b/allopathy.html</ext-link><date-in-citation iso-8601-date="2019-01-30">January 30, 2019</date-in-citation></element-citation></ref><ref id="bib9"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lewis</surname> <given-names>KN</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>The language of modern medicine: it's all Greek to me</article-title><source>The American Surgeon</source><volume>70</volume><elocation-id>91</elocation-id><pub-id pub-id-type="pmid">14964558</pub-id></element-citation></ref><ref id="bib10"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Montgomery</surname> <given-names>S</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>Of towers, walls, and fields: perspectives on language in science</article-title><source>Science</source><volume>303</volume><fpage>1333</fpage><lpage>1335</lpage><pub-id pub-id-type="doi">10.1126/science.1095204</pub-id><pub-id pub-id-type="pmid">14988554</pub-id></element-citation></ref><ref id="bib11"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Murrell</surname> <given-names>A</given-names></name><name><surname>Rakyan</surname> <given-names>VK</given-names></name><name><surname>Beck</surname> <given-names>S</given-names></name></person-group><year iso-8601-date="2005">2005</year><article-title>From genome to epigenome</article-title><source>Human Molecular Genetics</source><volume>14</volume><fpage>R3</fpage><lpage>R10</lpage><pub-id pub-id-type="doi">10.1093/hmg/ddi110</pub-id><pub-id pub-id-type="pmid">15809270</pub-id></element-citation></ref><ref id="bib12"><element-citation publication-type="book"><person-group person-group-type="author"><name><surname>Newman</surname> <given-names>D</given-names></name><name><surname>Karimi</surname> <given-names>S</given-names></name><name><surname>Cavedon</surname> <given-names>L</given-names></name></person-group><year iso-8601-date="2009">2009</year><chapter-title>Using topic models to interpret MEDLINE's medical subject headings</chapter-title><person-group person-group-type="editor"><name><surname>Nicholson</surname> <given-names>A</given-names></name><name><surname>Li</surname> <given-names>X</given-names></name></person-group><source>AI 2009: Advances in Artificial Intelligence</source><publisher-loc>Melbourne</publisher-loc><publisher-name>Springer</publisher-name><fpage>270</fpage><lpage>279</lpage><pub-id pub-id-type="doi">10.1007/978-3-642-10439-8_28</pub-id></element-citation></ref><ref id="bib13"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Nidditch</surname> <given-names>PH</given-names></name></person-group><year iso-8601-date="1983">1983</year><article-title>The first stage of the idea of mathematics: Pythagoreans, Plato, Aristotle</article-title><source>Midwest Studies in Philosophy</source><volume>8</volume><fpage>3</fpage><lpage>34</lpage><pub-id pub-id-type="doi">10.1111/j.1475-4975.1983.tb00458.x</pub-id></element-citation></ref><ref id="bib14"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ramoutsaki</surname> <given-names>I</given-names></name><name><surname>Ramoutsakis</surname> <given-names>I</given-names></name><name><surname>Bouros</surname> <given-names>D</given-names></name></person-group><year iso-8601-date="2002">2002</year><article-title>Pneumonology or Pneumology?</article-title><source>Chest</source><volume>121</volume><fpage>1385</fpage><lpage>1387</lpage><pub-id pub-id-type="doi">10.1378/chest.121.5.1385</pub-id></element-citation></ref><ref id="bib15"><element-citation publication-type="book"><person-group person-group-type="author"><name><surname>Russo</surname> <given-names>L</given-names></name></person-group><year iso-8601-date="2004">2004</year><source>The Forgotten Revolution: How Science Was Born in 300 BC and Why It Had to Be Reborn</source><publisher-loc>Berlin</publisher-loc><publisher-name>Springer</publisher-name><pub-id pub-id-type="doi">10.1007/978-3-642-18904-3</pub-id></element-citation></ref><ref id="bib16"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Seringhaus</surname> <given-names>MR</given-names></name><name><surname>Cayting</surname> <given-names>PD</given-names></name><name><surname>Gerstein</surname> <given-names>MB</given-names></name></person-group><year iso-8601-date="2008">2008</year><article-title>Uncovering trends in gene naming</article-title><source>Genome Biology</source><volume>9</volume><elocation-id>401</elocation-id><pub-id pub-id-type="doi">10.1186/gb-2008-9-1-401</pub-id><pub-id pub-id-type="pmid">18254929</pub-id></element-citation></ref><ref id="bib17"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sette</surname> <given-names>A</given-names></name><name><surname>Schenkelberg</surname> <given-names>TR</given-names></name><name><surname>Koff</surname> <given-names>WC</given-names></name></person-group><year iso-8601-date="2016">2016</year><article-title>Deciphering the human antigenome</article-title><source>Expert Review of Vaccines</source><volume>15</volume><fpage>167</fpage><lpage>171</lpage><pub-id pub-id-type="doi">10.1586/14760584.2016.1112743</pub-id><pub-id pub-id-type="pmid">26629807</pub-id></element-citation></ref><ref id="bib18"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sgaramella</surname> <given-names>V</given-names></name></person-group><year iso-8601-date="2013">2013</year><article-title>The hypergenome in inheritance and development</article-title><source>Cytogenetic and Genome Research</source><volume>139</volume><elocation-id>215</elocation-id><pub-id pub-id-type="doi">10.1159/000348326</pub-id><pub-id pub-id-type="pmid">23571874</pub-id></element-citation></ref><ref id="bib19"><element-citation publication-type="book"><person-group person-group-type="author"><name><surname>Silverman</surname> <given-names>A</given-names></name></person-group><year iso-8601-date="1992">1992</year><chapter-title>Plato's Cratylus: The naming of nature and the nature of naming</chapter-title><person-group person-group-type="editor"><name><surname>Annas</surname> <given-names>J</given-names></name></person-group><source>Oxford Studies in Ancient Philosophy</source><publisher-loc>Oxford</publisher-loc><publisher-name>Clarendon Press</publisher-name></element-citation></ref><ref id="bib20"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Snell</surname> <given-names>B</given-names></name></person-group><year iso-8601-date="1960">1960</year><article-title>The forging of a language for science in ancient Greece</article-title><source>The Classical Journal</source><volume>56</volume><fpage>50</fpage><lpage>60</lpage></element-citation></ref><ref id="bib21"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Steffanides</surname> <given-names>GF</given-names></name></person-group><year iso-8601-date="1965">1965</year><article-title>The role of greek and latin in science</article-title><source>The American Biology Teacher</source><volume>27</volume><fpage>785</fpage><lpage>789</lpage><pub-id pub-id-type="doi">10.2307/4441190</pub-id></element-citation></ref><ref id="bib22"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Streit</surname> <given-names>WR</given-names></name><name><surname>Schmitz</surname> <given-names>RA</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>Metagenomics--the key to the uncultured microbes</article-title><source>Current Opinion in Microbiology</source><volume>7</volume><fpage>492</fpage><lpage>498</lpage><pub-id pub-id-type="doi">10.1016/j.mib.2004.08.002</pub-id><pub-id pub-id-type="pmid">15451504</pub-id></element-citation></ref><ref id="bib23"><element-citation publication-type="web"><person-group person-group-type="author"><name><surname>Tamis</surname> <given-names>A</given-names></name></person-group><year iso-8601-date="2016">2016</year><article-title>The importance of learning the Greek language</article-title><ext-link ext-link-type="uri" xlink:href="https://au.greekreporter.com/2016/02/04/the-importance-of-learning-the-greek-language/">https://au.greekreporter.com/2016/02/04/the-importance-of-learning-the-greek-language/</ext-link><date-in-citation iso-8601-date="2019-01-30">January 30, 2019</date-in-citation></element-citation></ref><ref id="bib24"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tettelin</surname> <given-names>H</given-names></name><name><surname>Masignani</surname> <given-names>V</given-names></name><name><surname>Cieslewicz</surname> <given-names>MJ</given-names></name><name><surname>Donati</surname> <given-names>C</given-names></name><name><surname>Medini</surname> <given-names>D</given-names></name><name><surname>Ward</surname> <given-names>NL</given-names></name><name><surname>Angiuoli</surname> <given-names>SV</given-names></name><name><surname>Crabtree</surname> <given-names>J</given-names></name><name><surname>Jones</surname> <given-names>AL</given-names></name><name><surname>Durkin</surname> <given-names>AS</given-names></name><name><surname>Deboy</surname> <given-names>RT</given-names></name><name><surname>Davidsen</surname> <given-names>TM</given-names></name><name><surname>Mora</surname> <given-names>M</given-names></name><name><surname>Scarselli</surname> <given-names>M</given-names></name><name><surname>Margarit y Ros</surname> <given-names>I</given-names></name><name><surname>Peterson</surname> <given-names>JD</given-names></name><name><surname>Hauser</surname> <given-names>CR</given-names></name><name><surname>Sundaram</surname> <given-names>JP</given-names></name><name><surname>Nelson</surname> <given-names>WC</given-names></name><name><surname>Madupu</surname> <given-names>R</given-names></name><name><surname>Brinkac</surname> <given-names>LM</given-names></name><name><surname>Dodson</surname> <given-names>RJ</given-names></name><name><surname>Rosovitz</surname> <given-names>MJ</given-names></name><name><surname>Sullivan</surname> <given-names>SA</given-names></name><name><surname>Daugherty</surname> <given-names>SC</given-names></name><name><surname>Haft</surname> <given-names>DH</given-names></name><name><surname>Selengut</surname> <given-names>J</given-names></name><name><surname>Gwinn</surname> <given-names>ML</given-names></name><name><surname>Zhou</surname> <given-names>L</given-names></name><name><surname>Zafar</surname> <given-names>N</given-names></name><name><surname>Khouri</surname> <given-names>H</given-names></name><name><surname>Radune</surname> <given-names>D</given-names></name><name><surname>Dimitrov</surname> <given-names>G</given-names></name><name><surname>Watkins</surname> <given-names>K</given-names></name><name><surname>O'Connor</surname> <given-names>KJ</given-names></name><name><surname>Smith</surname> <given-names>S</given-names></name><name><surname>Utterback</surname> <given-names>TR</given-names></name><name><surname>White</surname> <given-names>O</given-names></name><name><surname>Rubens</surname> <given-names>CE</given-names></name><name><surname>Grandi</surname> <given-names>G</given-names></name><name><surname>Madoff</surname> <given-names>LC</given-names></name><name><surname>Kasper</surname> <given-names>DL</given-names></name><name><surname>Telford</surname> <given-names>JL</given-names></name><name><surname>Wessels</surname> <given-names>MR</given-names></name><name><surname>Rappuoli</surname> <given-names>R</given-names></name><name><surname>Fraser</surname> <given-names>CM</given-names></name></person-group><year iso-8601-date="2005">2005</year><article-title>Genome analysis of multiple pathogenic isolates of S<italic>treptococcus agalactiae</italic>: implications for the microbial &quot;pan-genome&quot;</article-title><source>PNAS</source><volume>102</volume><fpage>13950</fpage><lpage>13955</lpage><pub-id pub-id-type="doi">10.1073/pnas.0506758102</pub-id><pub-id pub-id-type="pmid">16172379</pub-id></element-citation></ref><ref id="bib25"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Trüper</surname> <given-names>HG</given-names></name></person-group><year iso-8601-date="1999">1999</year><article-title>How to name a prokaryote?</article-title><source>FEMS Microbiology Reviews</source><volume>23</volume><fpage>231</fpage><lpage>249</lpage><pub-id pub-id-type="doi">10.1016/S0168-6445(99)00005-4</pub-id></element-citation></ref><ref id="bib26"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Welch</surname> <given-names>GR</given-names></name></person-group><year iso-8601-date="2009">2009</year><article-title>Physiology, physiomics, and biophysics: a matter of words</article-title><source>Progress in Biophysics and Molecular Biology</source><volume>100</volume><fpage>4</fpage><lpage>17</lpage><pub-id pub-id-type="doi">10.1016/j.pbiomolbio.2009.08.001</pub-id><pub-id pub-id-type="pmid">19699228</pub-id></element-citation></ref><ref id="bib27"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wulff</surname> <given-names>HR</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>The language of medicine</article-title><source>Journal of the Royal Society of Medicine</source><volume>97</volume><fpage>187</fpage><lpage>188</lpage><pub-id pub-id-type="doi">10.1177/014107680409700412</pub-id><pub-id pub-id-type="pmid">15056745</pub-id></element-citation></ref></ref-list></back></article>