UP | HOME

# MCMC toolbox for Matlab - Examples

These examples are all Matlab scripts and the web pages are generated using the `publish` function in Matlab. This collection of examples is a part of the mcmcstat source code, in the `examples` sub directory. They use the MCMC toolbox, only.

Monod model
  Fitting two dimensional Monod model for bacterial growth.
Dose response
  The classical beetle data is analysed using logistic regression and MCMC.
Algae model
  Simple dynamic ODE model describes a nutirition food web in a lake.
Chemical kinetics model 1
  Simple chemical kinetics example with 3 model parameters.
Chemical kinetics model 2
  This example uses some advanced features of the toolbox. The data is made of two batches and some of the unknowns are local to the batches.
Normal
  Sample from a fixed multi dimensional Gaussian distribution to test the MCMC algorithm.
Banana
  Another technical example to check that the method works also with non Gaussian target distributions

These three examples were motivated by the interactive discussion in https://www.biogeosciences.net/14/4295/2017/bg-14-4295-2017-discussion.html

50 d Gaussian
  50 dimensional Gaussian target.
Cauchy distribution
  10 dimensional Cauchy distribution.
3 modes
  4 dimensional mixed Gaussian with 3 distinct modes.

Author: Marko Laine

Created: 2018-11-19 Ma 16:45