# motif_id motif_alt_id sequence_name start stop strand score p-value q-value matched_sequence Rv3830c_nonpal_1 antisense_aldA_642_from_start 24 38 - 17.7027 1.7e-07 0.00069 TTGTCAACATCGTCA Rv0047c_nonpal_2 antisense_mmpL4_1187_to_stop 11 38 + 4.92308 2.4e-07 0.000473 TTGGTCTCCAGAAATCATCAAAATCCGC Rv0023_nonpal_1 sense_pks9_325_to_stop 2 22 - 16.2113 6.9e-07 0.00202 TCTGGAGACGATTGCGTAGTT Rv3830c_pal_1 antisense_aldA_642_from_start 23 38 + 16.1688 8.01e-07 0.00168 GTGACGATGTTGACAA Rv3830c_pal_1 antisense_aldA_642_from_start 23 38 - 16.1688 8.01e-07 0.00168 TTGTCAACATCGTCAC Rv0678_nonpal_1 sense_mmpL4_1184_to_stop 4 18 - 14.625 1.65e-06 0.00362 AGAAATCATCAAAAT Rv0678_nonpal_1 antisense_mmpL4_1187_to_stop 20 34 + 14.625 1.65e-06 0.00362 AGAAATCATCAAAAT Rv1719_nonpal_2 antisense_pyrC_541_to_stop 5 25 + 15.7412 2.22e-06 0.00835 GGTGACCTCGGCGGTGATCGA Rv2324_nonpal_2 antisense_aldA_642_from_start 24 38 - 15.012 3.03e-06 0.00879 TTGTCAACATCGTCA Rv3249c_pal_1 antisense_aldA_642_from_start 28 39 + 13.5385 3.18e-06 0.0065 GATGTTGACAAC Rv3249c_pal_1 antisense_aldA_642_from_start 28 39 - 13.5385 3.18e-06 0.0065 GTTGTCAACATC Rv0302_nonpal_2 antisense_cobK_311_from_start 7 17 - 13.3974 4.27e-06 0.0241 CGCCATCATCG Rv2021c_nonpal_1 antisense_pyrC_541_to_stop 7 27 + 14.5663 5.22e-06 0.0178 TGACCTCGGCGGTGATCGAAA Rv2324_nonpal_2 sense_metA_384_from_start 15 29 - 14.4217 5.48e-06 0.00879 GTATCGAGATCAGCG Rv2324_nonpal_2 antisense_metA_391_from_start 19 33 + 14.4217 5.48e-06 0.00879 GTATCGAGATCAGCG Rv0023_nonpal_1 sense_mmpL4_1184_to_stop 16 36 + 13.9437 5.65e-06 0.00552 TCTGGAGACCAATTCGAAGCT Rv0023_nonpal_1 antisense_mmpL4_1187_to_stop 2 22 - 13.9437 5.65e-06 0.00552 TCTGGAGACCAATTCGAAGCT Rv3249c_nonpal_1 antisense_aldA_642_from_start 29 39 + 13.4219 5.84e-06 0.0281 ATGTTGACAAC Rv1049_nonpal_2 antisense_pyrC_541_to_stop 9 23 - 13.8933 8.15e-06 0.0151 GATCACCGCCGAGGT Rv1049_nonpal_2 sense_pyrC_548_to_stop 25 39 + 13.8933 8.15e-06 0.0151 GATCACCGCCGAGGT Rv1049_nonpal_2 sense_bioB_253_to_stop 6 20 + 13.7467 9.32e-06 0.0151 GTTCGCCGACCTGGA Rv0767c_nonpal_2 antisense_pyrC_541_to_stop 5 25 + 13.8101 9.48e-06 0.0352 GGTGACCTCGGCGGTGATCGA Rv0981_nonpal_2 antisense_aldA_642_from_start 13 33 + 12.8526 1.13e-05 0.0384 ACTGCTGGAGGTGACGATGTT Rv3488_nonpal_1 antisense_rocA_790_to_stop 13 26 + 13.7647 1.23e-05 0.022 AGCGGCCGATATTG Rv3488_nonpal_1 sense_rocA_797_to_stop 22 35 - 13.7647 1.23e-05 0.022 AGCGGCCGATATTG Rv3124_nonpal_1 13078_down_of_Rv3190c 7 33 + 6.27885 1.27e-05 0.00634 CAAAGCACAAAGTACACCAATCGGTTT Rv3124_nonpal_1 10041_up_of_Rv3188 7 33 + 6.27885 1.27e-05 0.00634 CAAAGCACAAAGTACACCAATCGGTTT Rv3124_nonpal_1 3360_up_of_Rv3179 7 33 + 6.27885 1.27e-05 0.00634 CAAAGCACAAAGTACACCAATCGGTTT Rv3124_nonpal_1 4999_down_of_Rv3180c 7 33 + 6.27885 1.27e-05 0.00634 CAAAGCACAAAGTACACCAATCGGTTT Rv3124_nonpal_1 8506_up_of_Rv3186 7 33 + 6.27885 1.27e-05 0.00634 CAAAGCACAAAGTACACCAATCGGTTT Rv3488_pal_2 antisense_rocA_790_to_stop 19 26 + 13.3721 1.3e-05 0.018 CGATATTG Rv3488_pal_2 sense_rocA_797_to_stop 22 29 + 13.3721 1.3e-05 0.018 CAATATCG Rv3488_pal_2 antisense_rocA_790_to_stop 19 26 - 13.3721 1.3e-05 0.018 CAATATCG Rv3488_pal_2 sense_rocA_797_to_stop 22 29 - 13.3721 1.3e-05 0.018 CGATATTG Rv0023_pal_2 antisense_aldA_642_from_start 23 38 + 13.039 1.32e-05 0.029 GTGACGATGTTGACAA Rv0023_pal_2 antisense_aldA_642_from_start 23 38 - 13.039 1.32e-05 0.029 TTGTCAACATCGTCAC Rv1956_nonpal_1 antisense_Rv1461_559_from_start 5 25 + 13 1.48e-05 0.0446 ATTATCGCCGGCAGGGATTAC Rv3830c_pal_2 antisense_aldA_642_from_start 31 39 + 11.8442 1.59e-05 0.0436 GTTGACAAC Rv3830c_pal_2 antisense_aldA_642_from_start 31 39 - 11.8442 1.59e-05 0.0436 GTTGTCAAC Rv1473A_nonpal_1 antisense_gca_467_from_start 16 29 + 12.7123 1.66e-05 0.0223 TTGTGATATTGATA Rv1473A_nonpal_1 sense_gca_460_from_start 19 32 - 12.7123 1.66e-05 0.0223 TTGTGATATTGATA Rv1219c_nonpal_2 93_up_of_lpqG 11 38 - -14.7692 1.83e-05 0.0443 ATTTCGGGGTACTGGCATCGACGGGCCC Rv1473A_nonpal_1 sense_metA_384_from_start 15 28 + 12.4795 1.85e-05 0.0223 CGCTGATCTCGATA Rv1473A_nonpal_1 antisense_metA_391_from_start 20 33 - 12.4795 1.85e-05 0.0223 CGCTGATCTCGATA Rv3488_pal_1 antisense_rocA_790_to_stop 19 26 + 13.1029 2.03e-05 0.0262 CGATATTG Rv3488_pal_1 sense_rocA_797_to_stop 22 29 + 13.1029 2.03e-05 0.0262 CAATATCG Rv3488_pal_1 antisense_rocA_790_to_stop 19 26 - 13.1029 2.03e-05 0.0262 CAATATCG Rv3488_pal_1 sense_rocA_797_to_stop 22 29 - 13.1029 2.03e-05 0.0262 CGATATTG Rv3488_nonpal_1 sense_rocA_797_to_stop 16 29 + 12.8088 2.05e-05 0.022 GGGTACCAATATCG Rv3488_nonpal_1 antisense_rocA_790_to_stop 19 32 - 12.8088 2.05e-05 0.022 GGGTACCAATATCG Rv2788_pal_2 antisense_aldA_642_from_start 13 33 + 11.6562 2.08e-05 0.039 ACTGCTGGAGGTGACGATGTT Rv2788_pal_2 antisense_aldA_642_from_start 13 33 - 11.6562 2.08e-05 0.039 AACATCGTCACCTCCAGCAGT Rv2021c_pal_1 antisense_aldA_642_from_start 25 39 + 11.8391 2.4e-05 0.0467 GACGATGTTGACAAC Rv2021c_pal_1 antisense_aldA_642_from_start 25 39 - 11.8391 2.4e-05 0.0467 GTTGTCAACATCGTC Rv3246c_pal_1 sense_Rv1461_552_from_start 12 27 + 12.1951 2.55e-05 0.0216 ATTTCGGTACAGTAAT Rv3246c_pal_1 antisense_Rv1461_559_from_start 21 36 + 12.1951 2.55e-05 0.0216 ATTACTGTACCGAAAT Rv3246c_pal_1 sense_Rv1461_552_from_start 12 27 - 12.1951 2.55e-05 0.0216 ATTACTGTACCGAAAT Rv3246c_pal_1 antisense_Rv1461_559_from_start 21 36 - 12.1951 2.55e-05 0.0216 ATTTCGGTACAGTAAT Rv2788_pal_1 antisense_cobK_311_from_start 9 30 + 11.8222 2.63e-05 0.0136 ATGATGGCGGTACCGGGATCCC Rv2788_pal_1 sense_cobK_304_from_start 18 39 + 11.8222 2.63e-05 0.0136 GGGATCCCGGTACCGCCATCAT Rv2788_pal_1 antisense_cobK_311_from_start 9 30 - 11.8222 2.63e-05 0.0136 GGGATCCCGGTACCGCCATCAT Rv2788_pal_1 sense_cobK_304_from_start 18 39 - 11.8222 2.63e-05 0.0136 ATGATGGCGGTACCGGGATCCC Rv2788_pal_1 antisense_Rv1461_559_from_start 3 24 + 11.7222 2.76e-05 0.0136 TTATTATCGCCGGCAGGGATTA Rv2788_pal_1 antisense_Rv1461_559_from_start 3 24 - 11.7222 2.76e-05 0.0136 TAATCCCTGCCGGCGATAATAA Rv3488_nonpal_1 antisense_fadE7_121_to_stop 16 29 + 12.0294 3.03e-05 0.022 CTCCAGCGATATCC Rv3488_nonpal_1 sense_fadE7_118_to_stop 9 22 - 12.0294 3.03e-05 0.022 CTCCAGCGATATCC Rv3681c_nonpal_1 sense_Rv0674_10_to_stop 16 35 + 11.6582 3.07e-05 0.104 CTGGAGGTGACATGAGTGAT Rv0023_nonpal_2 sense_gca_460_from_start 8 35 + -12.2885 3.2e-05 0.0376 ACATGCTGGCGTATCAATATCACAAGTC Rv0023_nonpal_2 antisense_gca_467_from_start 13 40 - -12.2885 3.2e-05 0.0376 ACATGCTGGCGTATCAATATCACAAGTC Rv1956_pal_1 antisense_rocA_790_to_stop 19 26 + 12.9651 3.32e-05 0.04 CGATATTG Rv1956_pal_1 sense_rocA_797_to_stop 22 29 + 12.9651 3.32e-05 0.04 CAATATCG Rv1956_pal_1 antisense_rocA_790_to_stop 19 26 - 12.9651 3.32e-05 0.04 CAATATCG Rv1956_pal_1 sense_rocA_797_to_stop 22 29 - 12.9651 3.32e-05 0.04 CGATATTG Rv2324_pal_1 10_up_of_Rv1866 22 36 + 12.0649 3.34e-05 0.0817 GCACCGATATGGTGA Rv2324_pal_1 10_up_of_Rv1866 22 36 - 12.0649 3.34e-05 0.0817 TCACCATATCGGTGC Rv1719_nonpal_1 sense_pks6_424_from_start 19 35 + 11.8553 3.83e-05 0.0432 TATCCAGATCGTGGGTT Rv1719_nonpal_1 sense_pks6_423_from_start 19 35 + 11.8553 3.83e-05 0.0432 TATCCAGATCGTGGGTT Rv1719_nonpal_1 antisense_pks6_430_from_start 13 29 - 11.8553 3.83e-05 0.0432 TATCCAGATCGTGGGTT Rv1719_nonpal_1 antisense_pks6_431_from_start 13 29 - 11.8553 3.83e-05 0.0432 TATCCAGATCGTGGGTT Rv2021c_pal_1 antisense_aldA_642_from_start 22 36 + 11.3563 3.85e-05 0.0467 GGTGACGATGTTGAC Rv2021c_pal_1 antisense_aldA_642_from_start 22 36 - 11.3563 3.85e-05 0.0467 GTCAACATCGTCACC Rv0767c_nonpal_2 antisense_Rv1251c_1309_from_start 17 37 - 11.5696 4.03e-05 0.071 GTTCAGCTTGAAGGCGCTGGA Rv0339c_nonpal_1 antisense_accA1_595_from_start 6 19 - 11.8736 4.13e-05 0.105 GGAGCGGTTTGTGT Rv0339c_nonpal_1 sense_accA1_598_from_start 19 32 + 11.8736 4.13e-05 0.105 GGAGCGGTTTGTGT Rv0691c_pal_1 antisense_aldA_642_from_start 28 39 + 11.5797 4.35e-05 0.0548 GATGTTGACAAC Rv0691c_pal_1 antisense_aldA_642_from_start 28 39 - 11.5797 4.35e-05 0.0548 GTTGTCAACATC Rv2642_pal_1 antisense_Rv2963_530_to_stop 3 23 + 11.1609 4.46e-05 0.072 AGAAGCTCTGCCAGAACGATT Rv2642_pal_1 antisense_Rv2963_530_to_stop 3 23 - 11.1609 4.46e-05 0.072 AATCGTTCTGGCAGAGCTTCT Rv1994c_nonpal_1 sense_metA_384_from_start 3 17 + 11.5616 4.49e-05 0.148 GCTCAAGATTTCCGC Rv3830c_nonpal_1 antisense_aldA_642_from_start 23 37 + 11.6216 4.54e-05 0.092 GTGACGATGTTGACA Rv3246c_nonpal_1 sense_metA_384_from_start 16 35 + 11.2469 4.59e-05 0.0713 GCTGATCTCGATACGTGACC Rv3246c_nonpal_1 antisense_metA_391_from_start 13 32 - 11.2469 4.59e-05 0.0713 GCTGATCTCGATACGTGACC Rv0602c_pal_1 sense_mmpL4_1184_to_stop 7 14 + 12.0759 4.73e-05 0.0477 TTGATGAT Rv0602c_pal_1 sense_mmpL4_1184_to_stop 7 14 - 12.0759 4.73e-05 0.0477 ATCATCAA Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 24 31 + 12.0759 4.73e-05 0.0477 ATCATCAA Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 24 31 - 12.0759 4.73e-05 0.0477 TTGATGAT Rv0135c_pal_1 antisense_cobK_311_from_start 15 24 + 10.9844 5.04e-05 0.0677 GCGGTACCGG Rv0135c_pal_1 sense_cobK_304_from_start 24 33 + 10.9844 5.04e-05 0.0677 CCGGTACCGC Rv0135c_pal_1 antisense_cobK_311_from_start 15 24 - 10.9844 5.04e-05 0.0677 CCGGTACCGC Rv0135c_pal_1 sense_cobK_304_from_start 24 33 - 10.9844 5.04e-05 0.0677 GCGGTACCGG Rv3488_nonpal_2 antisense_aldA_642_from_start 13 40 - -10.2553 5.35e-05 0.0931 CGTTGTCAACATCGTCACCTCCAGCAGT Rv3765c_nonpal_1 antisense_Rv2963_530_to_stop 1 20 + 7.13684 5.49e-05 0.181 AAAGAAGCTCTGCCAGAACG Rv0981_nonpal_2 sense_cobK_304_from_start 20 40 - 9.6 5.49e-05 0.0622 GATGATGGCGGTACCGGGATC Rv0981_nonpal_2 antisense_cobK_311_from_start 8 28 + 9.6 5.49e-05 0.0622 GATGATGGCGGTACCGGGATC Rv0302_nonpal_2 antisense_aldA_642_from_start 24 34 - 11.641 5.56e-05 0.157 CAACATCGTCA Rv1359_nonpal_1 antisense_fadE7_121_to_stop 2 29 + 3.91346 5.62e-05 0.0535 CGGATGACCGGGTACTCCAGCGATATCC Rv1359_nonpal_1 sense_fadE7_118_to_stop 9 36 - 3.91346 5.62e-05 0.0535 CGGATGACCGGGTACTCCAGCGATATCC Rv1675c_nonpal_1 antisense_aldA_642_from_start 17 37 + 4.69231 5.72e-05 0.215 CTGGAGGTGACGATGTTGACA Rv3133c_nonpal_1 antisense_PPE24_1270_to_stop 4 18 - 11.1449 5.98e-05 0.081 GGTGGCTTTAGTCTA Rv3133c_nonpal_1 antisense_PPE24_1345_to_stop 4 18 - 11.1449 5.98e-05 0.081 GGTGGCTTTAGTCTA Rv3133c_nonpal_1 antisense_PPE24_1570_to_stop 4 18 - 11.1449 5.98e-05 0.081 GGTGGCTTTAGTCTA Rv2359_nonpal_1 sense_Rv1461_552_from_start 3 30 + -2.82692 5.99e-05 0.0306 TCAAGGAATATTTCGGTACAGTAATCCC Rv3488_pal_1 sense_fadE7_118_to_stop 9 16 + 11.5588 6.08e-05 0.0364 GGATATCG Rv3488_pal_1 sense_fadE7_118_to_stop 9 16 - 11.5588 6.08e-05 0.0364 CGATATCC Rv3488_pal_1 antisense_fadE7_121_to_stop 22 29 + 11.5588 6.08e-05 0.0364 CGATATCC Rv3488_pal_1 antisense_fadE7_121_to_stop 22 29 - 11.5588 6.08e-05 0.0364 GGATATCG Rv1353c_nonpal_1 antisense_Rv1461_559_from_start 15 29 + 10.9697 6.22e-05 0.0735 GCAGGGATTACTGTA Rv1353c_nonpal_1 sense_Rv1461_552_from_start 19 33 - 10.9697 6.22e-05 0.0735 GCAGGGATTACTGTA Rv0757_nonpal_1 sense_Rv0674_10_to_stop 14 34 - 10.9241 6.25e-05 0.199 TCACTCATGTCACCTCCAGGA Rv2642_nonpal_1 sense_accA1_598_from_start 4 28 - 8.73256 6.32e-05 0.0758 AAACCGCTCCAGGAATAGCGTATCG Rv2642_nonpal_1 antisense_accA1_595_from_start 10 34 + 8.73256 6.32e-05 0.0758 AAACCGCTCCAGGAATAGCGTATCG Rv3849_nonpal_2 antisense_cobK_311_from_start 6 33 + 2.76744 6.42e-05 0.155 GCGATGATGGCGGTACCGGGATCCCACG Rv3574_nonpal_2 8499_up_of_Rv3186 4 31 - -17.7692 6.82e-05 0.0291 AGTACACCAATCGGTTTACTGTAGGAGG Rv3574_nonpal_2 3353_up_of_Rv3179 4 31 - -17.7692 6.82e-05 0.0291 AGTACACCAATCGGTTTACTGTAGGAGG Rv3574_nonpal_2 10034_up_of_Rv3188 4 31 - -17.7692 6.82e-05 0.0291 AGTACACCAATCGGTTTACTGTAGGAGG Rv3574_nonpal_2 13071_down_of_Rv3190c 4 31 - -17.7692 6.82e-05 0.0291 AGTACACCAATCGGTTTACTGTAGGAGG Rv3574_nonpal_2 4992_down_of_Rv3180c 4 31 - -17.7692 6.82e-05 0.0291 AGTACACCAATCGGTTTACTGTAGGAGG Rv0135c_nonpal_2 antisense_rocA_790_to_stop 7 34 + -4.48936 6.98e-05 0.159 TATGGTAGCGGCCGATATTGGTACCCAC Rv0158_nonpal_1 antisense_pyrC_541_to_stop 7 31 + 4.00943 7.01e-05 0.114 TGACCTCGGCGGTGATCGAAATACC Rv0022c_nonpal_1 antisense_pyrC_541_to_stop 23 37 + 11.0959 7.09e-05 0.141 CGAAATACCCTGGTC Rv0022c_nonpal_1 sense_pyrC_548_to_stop 11 25 - 11.0959 7.09e-05 0.141 CGAAATACCCTGGTC Rv0047c_nonpal_1 10_up_of_Rv1866 20 34 - 11.0625 7.2e-05 0.212 ACCATATCGGTGCCT Rv3488_pal_2 antisense_aldA_642_from_start 27 34 + 12.4767 7.31e-05 0.0678 CGATGTTG Rv3488_pal_2 antisense_aldA_642_from_start 27 34 - 12.4767 7.31e-05 0.0678 CAACATCG Rv1473A_nonpal_2 1662_up_of_Rv2018 33 40 + 11.9315 7.34e-05 0.066 CAAGATCG Rv0818_pal_1 sense_PPE24_1577_to_stop 8 23 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 sense_PPE24_1352_to_stop 8 23 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 sense_PPE24_1277_to_stop 8 23 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 sense_PPE24_1352_to_stop 8 23 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 sense_PPE24_1577_to_stop 8 23 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 sense_PPE24_1277_to_stop 8 23 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1570_to_stop 25 40 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1270_to_stop 25 40 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1345_to_stop 25 40 + 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1345_to_stop 25 40 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1270_to_stop 25 40 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv0818_pal_1 antisense_PPE24_1570_to_stop 25 40 - 10.5833 7.36e-05 0.0189 GATACCCGCGGGTATC Rv1404_pal_1 1662_up_of_Rv2018 22 34 + 10.8125 7.52e-05 0.117 TGAAATTGATACA Rv1404_pal_1 1662_up_of_Rv2018 22 34 - 10.8125 7.52e-05 0.117 TGTATCAATTTCA Rv0767c_nonpal_2 sense_PE_PGRS57_112_from_start 9 29 + 10.443 7.64e-05 0.071 TGCGACCACGCAGGTGCTGGC Rv0767c_nonpal_2 sense_PE_PGRS54_112_from_start 9 29 + 10.443 7.64e-05 0.071 TGCGACCACGCAGGTGCTGGC Rv1816_pal_1 43_up_of_Rv3179 11 23 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 5189_up_of_Rv3186 11 23 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 1682_down_of_Rv3180c 11 23 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 9761_down_of_Rv3190c 11 23 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 6724_up_of_Rv3188 11 23 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 6730_up_of_Rv3188 17 29 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 49_up_of_Rv3179 17 29 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 1688_down_of_Rv3180c 17 29 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 9767_down_of_Rv3190c 17 29 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 5195_up_of_Rv3186 17 29 + 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 9760_down_of_Rv3190c 19 31 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 42_up_of_Rv3179 19 31 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 5188_up_of_Rv3186 19 31 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 6723_up_of_Rv3188 19 31 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 1681_down_of_Rv3180c 19 31 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 1682_down_of_Rv3180c 11 23 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 6724_up_of_Rv3188 11 23 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 43_up_of_Rv3179 11 23 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 9761_down_of_Rv3190c 11 23 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 5189_up_of_Rv3186 11 23 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 1675_down_of_Rv3180c 25 37 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 9754_down_of_Rv3190c 25 37 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 5182_up_of_Rv3186 25 37 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 6717_up_of_Rv3188 25 37 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 36_up_of_Rv3179 25 37 + 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 9767_down_of_Rv3190c 17 29 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 6730_up_of_Rv3188 17 29 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 1688_down_of_Rv3180c 17 29 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 49_up_of_Rv3179 17 29 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 5195_up_of_Rv3186 17 29 - 10.5655 7.75e-05 0.00995 TGATCGGTGTACT Rv1816_pal_1 9760_down_of_Rv3190c 19 31 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 1681_down_of_Rv3180c 19 31 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 42_up_of_Rv3179 19 31 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 6723_up_of_Rv3188 19 31 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 5188_up_of_Rv3186 19 31 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 9754_down_of_Rv3190c 25 37 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 5182_up_of_Rv3186 25 37 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 6717_up_of_Rv3188 25 37 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 36_up_of_Rv3179 25 37 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv1816_pal_1 1675_down_of_Rv3180c 25 37 - 10.5655 7.75e-05 0.00995 AGTACACCGATCA Rv3488_nonpal_1 antisense_aldA_642_from_start 27 40 - 9.94118 7.82e-05 0.0486 CGTTGTCAACATCG Rv1473A_nonpal_1 sense_rocA_797_to_stop 19 32 - 8.82192 8.02e-05 0.0645 GGCCGATATTGGTA Rv1473A_nonpal_1 antisense_rocA_790_to_stop 16 29 + 8.82192 8.02e-05 0.0645 GGCCGATATTGGTA Rv0880_nonpal_1 antisense_rocA_790_to_stop 1 24 - 6.4 8.02e-05 0.138 ATATCGGCCGCTACCATAGCTATC Rv2788_pal_1 sense_Rv2963_537_to_stop 9 30 + 9.47778 8.06e-05 0.022 GCGGCATGGGTACCCGAATCGT Rv2788_pal_1 antisense_Rv2963_530_to_stop 18 39 + 9.47778 8.06e-05 0.022 ACGATTCGGGTACCCATGCCGC Rv2788_pal_1 sense_Rv2963_537_to_stop 9 30 - 9.47778 8.06e-05 0.022 ACGATTCGGGTACCCATGCCGC Rv2788_pal_1 antisense_Rv2963_530_to_stop 18 39 - 9.47778 8.06e-05 0.022 GCGGCATGGGTACCCGAATCGT Rv2989_nonpal_1 sense_Rv2038c_183_from_start 10 30 - 10.7368 8.12e-05 0.259 CGATCCGGATACGCCCACAGT Rv1994c_pal_1 sense_metA_384_from_start 3 17 + 10.7568 8.16e-05 0.102 GCTCAAGATTTCCGC Rv1994c_pal_1 sense_metA_384_from_start 3 17 - 10.7568 8.16e-05 0.102 GCGGAAATCTTGAGC Rv3488_pal_1 antisense_gca_467_from_start 19 26 + 9.91176 8.45e-05 0.0364 TGATATTG Rv3488_pal_1 sense_gca_460_from_start 22 29 + 9.91176 8.45e-05 0.0364 CAATATCA Rv3488_pal_1 antisense_gca_467_from_start 19 26 - 9.91176 8.45e-05 0.0364 CAATATCA Rv3488_pal_1 sense_gca_460_from_start 22 29 - 9.91176 8.45e-05 0.0364 TGATATTG Rv1956_pal_1 sense_fadE7_118_to_stop 9 16 + 11.1279 8.49e-05 0.051 GGATATCG Rv1956_pal_1 sense_fadE7_118_to_stop 9 16 - 11.1279 8.49e-05 0.051 CGATATCC Rv1956_pal_1 antisense_fadE7_121_to_stop 22 29 + 11.1279 8.49e-05 0.051 CGATATCC Rv1956_pal_1 antisense_fadE7_121_to_stop 22 29 - 11.1279 8.49e-05 0.051 GGATATCG Rv1956_nonpal_1 antisense_rocA_790_to_stop 5 25 - 9.77907 8.93e-05 0.135 AATATCGGCCGCTACCATAGC Rv1033c_nonpal_1 3353_up_of_Rv3179 22 36 - 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 4992_down_of_Rv3180c 22 36 - 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 13071_down_of_Rv3190c 22 36 - 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 10034_up_of_Rv3188 22 36 - 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 8499_up_of_Rv3186 22 36 - 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 13078_down_of_Rv3190c 12 26 + 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 4999_down_of_Rv3180c 12 26 + 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 10041_up_of_Rv3188 12 26 + 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 8506_up_of_Rv3186 12 26 + 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1033c_nonpal_1 3360_up_of_Rv3179 12 26 + 9.97468 9e-05 0.0387 CACAAAGTACACCAA Rv1353c_pal_1 4992_down_of_Rv3180c 7 17 + 10.6061 9.11e-05 0.0479 CCTACAGTAAA Rv1353c_pal_1 8499_up_of_Rv3186 7 17 + 10.6061 9.11e-05 0.0479 CCTACAGTAAA Rv1353c_pal_1 3353_up_of_Rv3179 7 17 + 10.6061 9.11e-05 0.0479 CCTACAGTAAA Rv1353c_pal_1 13071_down_of_Rv3190c 7 17 + 10.6061 9.11e-05 0.0479 CCTACAGTAAA Rv1353c_pal_1 10034_up_of_Rv3188 7 17 + 10.6061 9.11e-05 0.0479 CCTACAGTAAA Rv1353c_pal_1 4992_down_of_Rv3180c 7 17 - 10.6061 9.11e-05 0.0479 TTTACTGTAGG Rv1353c_pal_1 10034_up_of_Rv3188 7 17 - 10.6061 9.11e-05 0.0479 TTTACTGTAGG Rv1353c_pal_1 13071_down_of_Rv3190c 7 17 - 10.6061 9.11e-05 0.0479 TTTACTGTAGG Rv1353c_pal_1 8499_up_of_Rv3186 7 17 - 10.6061 9.11e-05 0.0479 TTTACTGTAGG Rv1353c_pal_1 3353_up_of_Rv3179 7 17 - 10.6061 9.11e-05 0.0479 TTTACTGTAGG Rv1776c_nonpal_1 sense_Rv2279_300_to_stop 21 26 + 10.3288 9.18e-05 0.283 ATCTCA Rv1776c_nonpal_1 antisense_Rv2279_293_to_stop 22 27 - 10.3288 9.18e-05 0.283 ATCTCA Rv2359_nonpal_1 antisense_PPE24_1345_to_stop 3 30 - -4.43269 9.19e-05 0.0306 GGTATCACAATCGGTGGCTTTAGTCTAC Rv2359_nonpal_1 antisense_PPE24_1270_to_stop 3 30 - -4.43269 9.19e-05 0.0306 GGTATCACAATCGGTGGCTTTAGTCTAC Rv2359_nonpal_1 antisense_PPE24_1570_to_stop 3 30 - -4.43269 9.19e-05 0.0306 GGTATCACAATCGGTGGCTTTAGTCTAC Rv0324_nonpal_1 antisense_cobK_311_from_start 7 14 + 11.3971 9.23e-05 0.0796 CGATGATG Rv1219c_nonpal_2 antisense_cobK_311_from_start 10 37 + -22.2735 9.87e-05 0.0797 TGATGGCGGTACCGGGATCCCACGGCGG Rv1219c_nonpal_2 sense_cobK_304_from_start 11 38 - -22.2735 9.87e-05 0.0797 TGATGGCGGTACCGGGATCCCACGGCGG Rv2324_nonpal_2 antisense_cobK_311_from_start 7 21 - 10.5663 0.000102 0.123 GTACCGCCATCATCG Rv1816_nonpal_1 sense_metA_384_from_start 9 25 + 10.4154 0.000103 0.146 GATTTCCGCTGATCTCG Rv1816_nonpal_1 antisense_metA_391_from_start 23 39 - 10.4154 0.000103 0.146 GATTTCCGCTGATCTCG Rv0691c_nonpal_1 93_up_of_lpqG 19 32 - 10.6562 0.000103 0.191 GGGTACTGGCATCG Rv2788_pal_1 sense_metA_384_from_start 8 29 + 8.88889 0.000104 0.022 AGATTTCCGCTGATCTCGATAC Rv2788_pal_1 antisense_metA_391_from_start 19 40 + 8.88889 0.000104 0.022 GTATCGAGATCAGCGGAAATCT Rv2788_pal_1 sense_metA_384_from_start 8 29 - 8.88889 0.000104 0.022 GTATCGAGATCAGCGGAAATCT Rv2788_pal_1 antisense_metA_391_from_start 19 40 - 8.88889 0.000104 0.022 AGATTTCCGCTGATCTCGATAC Rv3246c_nonpal_1 sense_pks9_325_to_stop 11 30 + 9.77778 0.000105 0.074 ATCGTCTCCAGATGGCTATC Rv1816_pal_2 antisense_pyrC_541_to_stop 16 24 + 11.137 0.000105 0.154 CGGTGATCG Rv1816_pal_2 sense_pyrC_548_to_stop 24 32 + 11.137 0.000105 0.154 CGATCACCG Rv1816_pal_2 antisense_pyrC_541_to_stop 16 24 - 11.137 0.000105 0.154 CGATCACCG Rv1816_pal_2 sense_pyrC_548_to_stop 24 32 - 11.137 0.000105 0.154 CGGTGATCG Rv2011c_nonpal_1 sense_bioB_253_to_stop 1 19 + 10.3286 0.000106 0.23 ACCCCGTTCGCCGACCTGG Rv3736_nonpal_1 antisense_aldA_642_from_start 22 36 + 10.2609 0.000107 0.488 GGTGACGATGTTGAC Rv0135c_nonpal_1 sense_rocA_797_to_stop 15 25 + 11.125 0.000107 0.242 TGGGTACCAAT Rv0135c_nonpal_1 antisense_rocA_790_to_stop 23 33 - 11.125 0.000107 0.242 TGGGTACCAAT Rv1049_nonpal_2 5189_up_of_Rv3186 12 26 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 6724_up_of_Rv3188 12 26 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 43_up_of_Rv3179 12 26 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 1682_down_of_Rv3180c 12 26 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 9761_down_of_Rv3190c 12 26 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 6730_up_of_Rv3188 18 32 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 1688_down_of_Rv3180c 18 32 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 5195_up_of_Rv3186 18 32 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 9767_down_of_Rv3190c 18 32 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 49_up_of_Rv3179 18 32 + 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 6723_up_of_Rv3188 16 30 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 9760_down_of_Rv3190c 16 30 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 42_up_of_Rv3179 16 30 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 5188_up_of_Rv3186 16 30 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 1681_down_of_Rv3180c 16 30 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 5182_up_of_Rv3186 22 36 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 6717_up_of_Rv3188 22 36 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 36_up_of_Rv3179 22 36 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 1675_down_of_Rv3180c 22 36 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1049_nonpal_2 9754_down_of_Rv3190c 22 36 - 10.48 0.000108 0.0228 GTACACCGATCAGTA Rv1994c_pal_1 sense_Rv1461_552_from_start 5 19 + 10.3378 0.000109 0.102 AAGGAATATTTCGGT Rv1994c_pal_1 sense_Rv1461_552_from_start 5 19 - 10.3378 0.000109 0.102 ACCGAAATATTCCTT Rv1049_nonpal_1 sense_mptA_23_from_start 5 19 + 10.4429 0.00011 0.268 TCCGAGCCATGCTCC Rv1049_nonpal_1 37_up_of_Rv2172c 5 19 + 10.4429 0.00011 0.268 TCCGAGCCATGCTCC Rv2011c_pal_1 antisense_aldA_642_from_start 24 38 + 10.25 0.00011 0.266 TGACGATGTTGACAA Rv2011c_pal_1 antisense_aldA_642_from_start 24 38 - 10.25 0.00011 0.266 TTGTCAACATCGTCA Rv2642_nonpal_1 antisense_Rv2963_530_to_stop 2 26 + 7.39535 0.00011 0.0883 AAGAAGCTCTGCCAGAACGATTCGG Rv1353c_nonpal_1 49_up_of_Rv3179 1 15 - 10.2879 0.000111 0.0735 ATAACCGACACTGTA Rv1353c_nonpal_1 9767_down_of_Rv3190c 1 15 - 10.2879 0.000111 0.0735 ATAACCGACACTGTA Rv1353c_nonpal_1 5195_up_of_Rv3186 1 15 - 10.2879 0.000111 0.0735 ATAACCGACACTGTA Rv1353c_nonpal_1 1688_down_of_Rv3180c 1 15 - 10.2879 0.000111 0.0735 ATAACCGACACTGTA Rv1353c_nonpal_1 6730_up_of_Rv3188 1 15 - 10.2879 0.000111 0.0735 ATAACCGACACTGTA Rv1473A_nonpal_1 antisense_aldA_642_from_start 24 37 + 7.93151 0.000111 0.0764 TGACGATGTTGACA Rv2359_nonpal_1 sense_mmpL4_1184_to_stop 4 31 + -5.24038 0.000113 0.0306 ATTTTGATGATTTCTGGAGACCAATTCG Rv2359_nonpal_1 antisense_mmpL4_1187_to_stop 7 34 - -5.24038 0.000113 0.0306 ATTTTGATGATTTCTGGAGACCAATTCG Rv0472c_nonpal_1 10_up_of_Rv1866 20 30 - 7.875 0.000115 0.211 TATCGGTGCCT Rv0576_nonpal_1 sense_PPE24_1277_to_stop 4 29 - 9.39773 0.000118 0.0531 GATTGTGATACCCGCGGGTATCGTCA Rv0576_nonpal_1 sense_PPE24_1577_to_stop 4 29 - 9.39773 0.000118 0.0531 GATTGTGATACCCGCGGGTATCGTCA Rv0576_nonpal_1 sense_PPE24_1352_to_stop 4 29 - 9.39773 0.000118 0.0531 GATTGTGATACCCGCGGGTATCGTCA Rv3246c_nonpal_1 sense_mmpL4_1184_to_stop 17 36 + 9.54321 0.000119 0.074 CTGGAGACCAATTCGAAGCT Rv3246c_nonpal_1 antisense_mmpL4_1187_to_stop 2 21 - 9.54321 0.000119 0.074 CTGGAGACCAATTCGAAGCT Rv0023_nonpal_1 antisense_aldA_642_from_start 19 39 + 9.94366 0.00012 0.088 GGAGGTGACGATGTTGACAAC Rv0273c_pal_1 antisense_aldA_642_from_start 23 38 + 10.2375 0.000122 0.239 GTGACGATGTTGACAA Rv0273c_pal_1 antisense_aldA_642_from_start 23 38 - 10.2375 0.000122 0.239 TTGTCAACATCGTCAC Rv1423_pal_1 sense_gca_460_from_start 5 16 + 10.3699 0.000126 0.127 CCGACATGCTGG Rv1423_pal_1 sense_gca_460_from_start 5 16 - 10.3699 0.000126 0.127 CCAGCATGTCGG Rv1219c_nonpal_1 antisense_Rv1251c_1309_from_start 24 38 + 9.77215 0.000127 0.586 CCTTCAAGCTGAACG Rv0653c_nonpal_1 sense_pks6_424_from_start 4 22 + 9.22785 0.000129 0.0896 TGTGCGATAACAGCGTATC Rv0653c_nonpal_1 sense_pks6_423_from_start 4 22 + 9.22785 0.000129 0.0896 TGTGCGATAACAGCGTATC Rv0818_nonpal_1 sense_PPE24_1277_to_stop 3 23 - 6.96809 0.000131 0.149 GATACCCGCGGGTATCGTCAG Rv0818_nonpal_1 sense_PPE24_1577_to_stop 3 23 - 6.96809 0.000131 0.149 GATACCCGCGGGTATCGTCAG Rv0818_nonpal_1 sense_PPE24_1352_to_stop 3 23 - 6.96809 0.000131 0.149 GATACCCGCGGGTATCGTCAG Rv3557c_nonpal_1 10041_up_of_Rv3188 17 36 + -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 13078_down_of_Rv3190c 17 36 + -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 4999_down_of_Rv3180c 17 36 + -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 3360_up_of_Rv3179 17 36 + -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 8506_up_of_Rv3186 17 36 + -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 13071_down_of_Rv3190c 12 31 - -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 8499_up_of_Rv3186 12 31 - -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 10034_up_of_Rv3188 12 31 - -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 3353_up_of_Rv3179 12 31 - -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv3557c_nonpal_1 4992_down_of_Rv3180c 12 31 - -0.951923 0.000132 0.0457 AGTACACCAATCGGTTTACT Rv2021c_nonpal_1 sense_bioB_253_to_stop 2 22 - 9.40964 0.000135 0.0539 CCTCCAGGTCGGCGAACGGGG Rv0576_nonpal_1 sense_PPE24_1577_to_stop 2 27 + 9.09091 0.000138 0.0531 GCTGACGATACCCGCGGGTATCACAA Rv0576_nonpal_1 sense_PPE24_1352_to_stop 2 27 + 9.09091 0.000138 0.0531 GCTGACGATACCCGCGGGTATCACAA Rv0576_nonpal_1 sense_PPE24_1277_to_stop 2 27 + 9.09091 0.000138 0.0531 GCTGACGATACCCGCGGGTATCACAA Rv0324_nonpal_1 antisense_aldA_642_from_start 24 31 + 11.1471 0.000139 0.0796 TGACGATG Rv3557c_nonpal_1 antisense_frdA_787_from_start 20 39 - -1.17308 0.000142 0.0457 AAGACGGCTACCGCTACCTC Rv1353c_nonpal_1 antisense_frdA_787_from_start 23 37 + 9.9697 0.000143 0.083 GTAGCGGTAGCCGTC Rv3488_nonpal_1 sense_gca_460_from_start 16 29 + 8.42647 0.000143 0.0691 GCGTATCAATATCA Rv3488_nonpal_1 antisense_gca_467_from_start 19 32 - 8.42647 0.000143 0.0691 GCGTATCAATATCA Rv2250c_nonpal_1 antisense_PPE34_1661_from_start 2 11 + 10.4783 0.000146 0.184 CACTGTCACG Rv2250c_nonpal_1 sense_PPE34_1664_from_start 27 36 - 10.4783 0.000146 0.184 CACTGTCACG Rv2250c_nonpal_1 sense_PPE34_1439_from_start 27 36 - 10.4783 0.000146 0.184 CACTGTCACG Rv2250c_nonpal_1 sense_PPE34_3066_to_stop 27 36 - 10.4783 0.000146 0.184 CACTGTCACG Rv0678_nonpal_1 antisense_mmpL4_1187_to_stop 22 36 - 9.84375 0.000148 0.112 GGATTTTGATGATTT Rv0678_nonpal_1 sense_mmpL4_1184_to_stop 2 16 + 9.84375 0.000148 0.112 GGATTTTGATGATTT Rv1255c_nonpal_1 antisense_Rv1461_472_from_start 5 24 + 8.49425 0.00015 0.23 GACTCCTTGAGCCTCCAGAT Rv1255c_nonpal_1 sense_Rv1461_475_from_start 14 33 - 8.49425 0.00015 0.23 GACTCCTTGAGCCTCCAGAT Rv1353c_nonpal_2 93_up_of_lpqG 2 22 - -21.1453 0.00015 0.136 ATCGACGGGCCCTACAATGCG Rv0678_pal_1 antisense_Rv0370c_389_from_start 3 9 + 10.5147 0.000152 0.358 TCGATGA Rv0678_pal_1 antisense_Rv0370c_389_from_start 3 9 - 10.5147 0.000152 0.358 TCATCGA Rv1423_nonpal_1 sense_gca_460_from_start 6 16 + 9.76812 0.000153 0.156 CGACATGCTGG Rv1473A_nonpal_2 antisense_Rv1461_472_from_start 31 38 - 10.589 0.000154 0.066 CCAGATCA Rv1473A_nonpal_2 sense_Rv0674_10_to_stop 32 39 - 10.589 0.000154 0.066 CCAGATCA Rv0081_pal_1 antisense_aldA_642_from_start 23 38 + 9.2 0.000154 0.146 GTGACGATGTTGACAA Rv0081_pal_1 antisense_aldA_642_from_start 23 38 - 9.2 0.000154 0.146 TTGTCAACATCGTCAC Rv0653c_nonpal_1 sense_fadE7_118_to_stop 5 23 + 8.8481 0.000155 0.0896 AACGGGATATCGCTGGAGT Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 15 33 - 8.8481 0.000155 0.0896 AACGGGATATCGCTGGAGT Rv0047c_nonpal_1 antisense_Rv2279_293_to_stop 6 20 - 10.0312 0.000157 0.212 TACACATCGATCCGG Rv0678_nonpal_1 sense_mmpL4_1184_to_stop 26 40 - 9.75 0.000158 0.112 AAATAGCTTCGAATT Rv2250c_nonpal_2 sense_fadE7_118_to_stop 6 33 - -36.1624 0.000159 0.193 ATGACCGGGTACTCCAGCGATATCCCGT Rv2250c_nonpal_2 antisense_fadE7_121_to_stop 5 32 + -36.1624 0.000159 0.193 ATGACCGGGTACTCCAGCGATATCCCGT Rv0653c_nonpal_1 antisense_pyrC_541_to_stop 21 39 + 8.78481 0.00016 0.0896 ATCGAAATACCCTGGTCCT Rv0653c_nonpal_1 sense_pyrC_548_to_stop 9 27 - 8.78481 0.00016 0.0896 ATCGAAATACCCTGGTCCT Rv2021c_nonpal_1 antisense_aldA_642_from_start 18 38 + 9.07229 0.000161 0.0539 TGGAGGTGACGATGTTGACAA Rv0117_nonpal_1 8506_up_of_Rv3186 7 33 + -1.71154 0.000162 0.073 CAAAGCACAAAGTACACCAATCGGTTT Rv0117_nonpal_1 10041_up_of_Rv3188 7 33 + -1.71154 0.000162 0.073 CAAAGCACAAAGTACACCAATCGGTTT Rv0117_nonpal_1 4999_down_of_Rv3180c 7 33 + -1.71154 0.000162 0.073 CAAAGCACAAAGTACACCAATCGGTTT Rv0117_nonpal_1 3360_up_of_Rv3179 7 33 + -1.71154 0.000162 0.073 CAAAGCACAAAGTACACCAATCGGTTT Rv0117_nonpal_1 13078_down_of_Rv3190c 7 33 + -1.71154 0.000162 0.073 CAAAGCACAAAGTACACCAATCGGTTT Rv3133c_pal_1 antisense_PPE24_1270_to_stop 3 18 + 10.1233 0.000162 0.114 GTAGACTAAAGCCACC Rv3133c_pal_1 antisense_PPE24_1345_to_stop 3 18 + 10.1233 0.000162 0.114 GTAGACTAAAGCCACC Rv3133c_pal_1 antisense_PPE24_1570_to_stop 3 18 + 10.1233 0.000162 0.114 GTAGACTAAAGCCACC Rv3133c_pal_1 antisense_PPE24_1345_to_stop 3 18 - 10.1233 0.000162 0.114 GGTGGCTTTAGTCTAC Rv3133c_pal_1 antisense_PPE24_1270_to_stop 3 18 - 10.1233 0.000162 0.114 GGTGGCTTTAGTCTAC Rv3133c_pal_1 antisense_PPE24_1570_to_stop 3 18 - 10.1233 0.000162 0.114 GGTGGCTTTAGTCTAC Rv0022c_nonpal_1 1662_up_of_Rv2018 16 30 - 9.79452 0.000163 0.141 TCAATTTCACTGGAG Rv3574_nonpal_1 sense_fadE7_118_to_stop 2 16 + 9.45588 0.000165 0.255 GGCAACGGGATATCG Rv3574_nonpal_1 antisense_fadE7_121_to_stop 22 36 - 9.45588 0.000165 0.255 GGCAACGGGATATCG Rv1423_nonpal_1 36_up_of_Rv3179 2 12 + 9.63768 0.000166 0.156 GGGCACGCCGA Rv1423_nonpal_1 6717_up_of_Rv3188 2 12 + 9.63768 0.000166 0.156 GGGCACGCCGA Rv1423_nonpal_1 9754_down_of_Rv3190c 2 12 + 9.63768 0.000166 0.156 GGGCACGCCGA Rv1423_nonpal_1 5182_up_of_Rv3186 2 12 + 9.63768 0.000166 0.156 GGGCACGCCGA Rv1423_nonpal_1 1675_down_of_Rv3180c 2 12 + 9.63768 0.000166 0.156 GGGCACGCCGA Rv0324_pal_1 antisense_pyrC_541_to_stop 13 24 + 9.71605 0.000167 0.218 CGGCGGTGATCG Rv0324_pal_1 antisense_pyrC_541_to_stop 13 24 - 9.71605 0.000167 0.218 CGATCACCGCCG Rv0324_pal_1 sense_pyrC_548_to_stop 24 35 + 9.71605 0.000167 0.218 CGATCACCGCCG Rv0324_pal_1 sense_pyrC_548_to_stop 24 35 - 9.71605 0.000167 0.218 CGGCGGTGATCG Rv1353c_pal_1 sense_Rv1461_552_from_start 17 27 + 9.36364 0.000167 0.0627 GGTACAGTAAT Rv1353c_pal_1 antisense_Rv1461_559_from_start 21 31 + 9.36364 0.000167 0.0627 ATTACTGTACC Rv1353c_pal_1 sense_Rv1461_552_from_start 17 27 - 9.36364 0.000167 0.0627 ATTACTGTACC Rv1353c_pal_1 antisense_Rv1461_559_from_start 21 31 - 9.36364 0.000167 0.0627 GGTACAGTAAT Rv1994c_nonpal_1 antisense_Rv2963_530_to_stop 13 27 + 9.73973 0.000168 0.148 CCAGAACGATTCGGG Rv1994c_nonpal_1 sense_Rv2963_537_to_stop 21 35 - 9.73973 0.000168 0.148 CCAGAACGATTCGGG Rv1994c_nonpal_1 sense_Rv1461_552_from_start 5 19 - 9.72603 0.00017 0.148 ACCGAAATATTCCTT Rv0081_pal_1 93_up_of_lpqG 6 21 + 9.01333 0.000171 0.146 TTGTAGGGCCCGTCGA Rv0081_pal_1 93_up_of_lpqG 6 21 - 9.01333 0.000171 0.146 TCGACGGGCCCTACAA Rv2011c_nonpal_1 sense_PE_PGRS54_112_from_start 5 23 - 9.67143 0.000174 0.23 ACCTGCGTGGTCGCACTGG Rv2011c_nonpal_1 sense_PE_PGRS57_112_from_start 5 23 - 9.67143 0.000174 0.23 ACCTGCGTGGTCGCACTGG Rv3066_nonpal_1 antisense_Rv1251c_1309_from_start 3 22 + 8.55172 0.000174 0.68 CGAGGTACAGCGGCTCCAGC Rv0158_nonpal_1 sense_accA1_598_from_start 12 36 + 1.00943 0.000174 0.114 TATTCCTGGAGCGGTTTGTGTTGCG Rv0158_nonpal_1 antisense_accA1_595_from_start 2 26 - 1.00943 0.000174 0.114 TATTCCTGGAGCGGTTTGTGTTGCG Rv0653c_pal_1 sense_pyrC_548_to_stop 9 32 + 9.03797 0.000176 0.058 AGGACCAGGGTATTTCGATCACCG Rv0653c_pal_1 antisense_pyrC_541_to_stop 16 39 + 9.03797 0.000176 0.058 CGGTGATCGAAATACCCTGGTCCT Rv0653c_pal_1 sense_pyrC_548_to_stop 9 32 - 9.03797 0.000176 0.058 CGGTGATCGAAATACCCTGGTCCT Rv0653c_pal_1 antisense_pyrC_541_to_stop 16 39 - 9.03797 0.000176 0.058 AGGACCAGGGTATTTCGATCACCG Rv1816_pal_1 sense_Rv1278_1158_to_stop 22 34 + 9.57931 0.000176 0.0215 AGGTCGCTGACCT Rv1816_pal_1 sense_Rv1278_1158_to_stop 22 34 - 9.57931 0.000176 0.0215 AGGTCAGCGACCT Rv0576_nonpal_1 antisense_pks6_431_from_start 6 31 - 8.60227 0.000176 0.0531 CGTATCCAGATCGTGGGTTCACGAAT Rv0576_nonpal_1 antisense_pks6_430_from_start 6 31 - 8.60227 0.000176 0.0531 CGTATCCAGATCGTGGGTTCACGAAT Rv1359_nonpal_1 sense_fadE7_118_to_stop 8 35 + 0.0865385 0.000176 0.0615 GGGATATCGCTGGAGTACCCGGTCATCC Rv1359_nonpal_1 antisense_fadE7_121_to_stop 3 30 - 0.0865385 0.000176 0.0615 GGGATATCGCTGGAGTACCCGGTCATCC Rv0135c_pal_1 sense_rocA_797_to_stop 15 24 + 10.0938 0.000178 0.119 TGGGTACCAA Rv0135c_pal_1 antisense_rocA_790_to_stop 24 33 + 10.0938 0.000178 0.119 TTGGTACCCA Rv0135c_pal_1 sense_rocA_797_to_stop 15 24 - 10.0938 0.000178 0.119 TTGGTACCCA Rv0135c_pal_1 antisense_rocA_790_to_stop 24 33 - 10.0938 0.000178 0.119 TGGGTACCAA Rv3133c_nonpal_1 antisense_aldA_642_from_start 22 36 + 9.68116 0.000178 0.169 GGTGACGATGTTGAC Rv0135c_nonpal_1 sense_cobK_304_from_start 24 34 + 10.6875 0.000181 0.242 CCGGTACCGCC Rv0135c_nonpal_1 antisense_cobK_311_from_start 14 24 - 10.6875 0.000181 0.242 CCGGTACCGCC Rv1556_pal_1 sense_PPE24_1352_to_stop 8 23 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 sense_PPE24_1577_to_stop 8 23 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 sense_PPE24_1277_to_stop 8 23 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 sense_PPE24_1577_to_stop 8 23 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 sense_PPE24_1352_to_stop 8 23 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 sense_PPE24_1277_to_stop 8 23 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1345_to_stop 25 40 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1570_to_stop 25 40 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1270_to_stop 25 40 + 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1270_to_stop 25 40 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1570_to_stop 25 40 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1556_pal_1 antisense_PPE24_1345_to_stop 25 40 - 8.50526 0.000188 0.0694 GATACCCGCGGGTATC Rv1359_nonpal_1 antisense_Rv2279_293_to_stop 2 29 + -0.25 0.000194 0.0615 TGAACCGGATCGATGTGTACTGAGATCC Rv1359_nonpal_1 sense_Rv1461_552_from_start 2 29 + -0.25 0.000194 0.0615 TTCAAGGAATATTTCGGTACAGTAATCC Rv3124_nonpal_1 sense_accA1_598_from_start 4 30 - -2.875 0.000196 0.0698 ACAAACCGCTCCAGGAATAGCGTATCG Rv3124_nonpal_1 antisense_accA1_595_from_start 8 34 + -2.875 0.000196 0.0698 ACAAACCGCTCCAGGAATAGCGTATCG Rv1473A_nonpal_1 antisense_mmpL4_1187_to_stop 26 39 - 6.24658 0.000196 0.118 CGCGGATTTTGATG Rv0691c_pal_1 93_up_of_lpqG 20 31 + 9.84058 0.000196 0.0548 GATGCCAGTACC Rv0691c_pal_1 93_up_of_lpqG 20 31 - 9.84058 0.000196 0.0548 GGTACTGGCATC Rv0275c_nonpal_1 4999_down_of_Rv3180c 14 39 + -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 3360_up_of_Rv3179 14 39 + -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 8506_up_of_Rv3186 14 39 + -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 10041_up_of_Rv3188 14 39 + -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 13078_down_of_Rv3190c 14 39 + -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 4992_down_of_Rv3180c 9 34 - -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 10034_up_of_Rv3188 9 34 - -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 3353_up_of_Rv3179 9 34 - -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 13071_down_of_Rv3190c 9 34 - -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv0275c_nonpal_1 8499_up_of_Rv3186 9 34 - -0.692308 0.000197 0.0449 CAAAGTACACCAATCGGTTTACTGTA Rv2021c_nonpal_1 sense_Rv2038c_183_from_start 20 40 + 8.63855 0.0002 0.0539 TATCCGGATCGGCGAGCGCGA Rv0465c_nonpal_1 sense_gca_460_from_start 11 34 + -2.63218 0.0002 0.319 TGCTGGCGTATCAATATCACAAGT Rv0465c_nonpal_1 antisense_gca_467_from_start 14 37 - -2.63218 0.0002 0.319 TGCTGGCGTATCAATATCACAAGT Rv0081_pal_1 antisense_mmpL4_1187_to_stop 25 40 + 8.70667 0.0002 0.146 TCATCAAAATCCGCGA Rv0081_pal_1 antisense_mmpL4_1187_to_stop 25 40 - 8.70667 0.0002 0.146 TCGCGGATTTTGATGA Rv3246c_nonpal_1 sense_Rv1461_552_from_start 9 28 + 8.50617 0.000203 0.0747 AATATTTCGGTACAGTAATC Rv3246c_nonpal_1 antisense_Rv1461_559_from_start 20 39 - 8.50617 0.000203 0.0747 AATATTTCGGTACAGTAATC Rv2506_nonpal_1 antisense_PPE34_1661_from_start 22 40 + 6.19149 0.000205 0.325 GGAATCCGGGGAAAAATGG Rv0324_nonpal_1 93_up_of_lpqG 16 23 + 10.7059 0.000206 0.0796 CGTCGATG Rv0818_nonpal_1 sense_cobK_304_from_start 16 36 + 5.68085 0.000206 0.149 GTGGGATCCCGGTACCGCCAT Rv0818_nonpal_1 antisense_cobK_311_from_start 12 32 - 5.68085 0.000206 0.149 GTGGGATCCCGGTACCGCCAT Rv0576_nonpal_1 antisense_Rv1461_559_from_start 10 35 + 8.22727 0.000211 0.0531 CGCCGGCAGGGATTACTGTACCGAAA Rv0576_nonpal_1 sense_Rv1461_552_from_start 13 38 - 8.22727 0.000211 0.0531 CGCCGGCAGGGATTACTGTACCGAAA Rv0081_nonpal_2 10_up_of_Rv1866 19 40 + -11.5865 0.000212 0.162 GAGGCACCGATATGGTGACACG Rv2009_nonpal_1 sense_pyrC_548_to_stop 4 24 + 7.79747 0.000214 0.279 GGCTAAGGACCAGGGTATTTC Rv3249c_nonpal_1 antisense_aldA_642_from_start 22 32 - 9.76562 0.000214 0.47 ACATCGTCACC Rv3849_nonpal_1 sense_pks9_325_to_stop 29 40 + 9.76712 0.000215 0.549 TCGGTTTGCCCG Rv1404_nonpal_1 antisense_Rv1461_559_from_start 2 27 - 7.9875 0.000219 0.0347 CAGTAATCCCTGCCGGCGATAATAAG Rv0967_nonpal_2 sense_Rv2038c_183_from_start 19 39 - -2.91489 0.00022 0.828 CGCGCTCGCCGATCCGGATAC Rv0678_pal_2 sense_mmpL4_1184_to_stop 6 21 + 8.36 0.000221 0.217 TTTGATGATTTCTGGA Rv0678_pal_2 antisense_mmpL4_1187_to_stop 17 32 + 8.36 0.000221 0.217 TCCAGAAATCATCAAA Rv0678_pal_2 sense_mmpL4_1184_to_stop 6 21 - 8.36 0.000221 0.217 TCCAGAAATCATCAAA Rv0678_pal_2 antisense_mmpL4_1187_to_stop 17 32 - 8.36 0.000221 0.217 TTTGATGATTTCTGGA Rv0472c_nonpal_1 sense_gca_460_from_start 19 29 + 6.14423 0.000222 0.211 TATCAATATCA Rv0472c_nonpal_1 antisense_gca_467_from_start 19 29 - 6.14423 0.000222 0.211 TATCAATATCA Rv2011c_pal_1 antisense_Rv1251c_1309_from_start 24 38 + 9.33333 0.000228 0.276 CCTTCAAGCTGAACG Rv2011c_pal_1 antisense_Rv1251c_1309_from_start 24 38 - 9.33333 0.000228 0.276 CGTTCAGCTTGAAGG Rv0465c_nonpal_2 sense_pyrC_548_to_stop 7 34 - 2.13793 0.000229 0.559 GGCGGTGATCGAAATACCCTGGTCCTTA Rv0302_nonpal_1 antisense_frdA_787_from_start 26 40 + 9.02899 0.000231 0.199 GCGGTAGCCGTCTTT Rv2887_nonpal_1 sense_Rv1461_552_from_start 3 17 + 7.525 0.000232 0.519 TCAAGGAATATTTCG Rv0117_nonpal_1 antisense_fadE7_121_to_stop 2 28 + -3.04808 0.000233 0.0751 CGGATGACCGGGTACTCCAGCGATATC Rv0117_nonpal_1 sense_fadE7_118_to_stop 10 36 - -3.04808 0.000233 0.0751 CGGATGACCGGGTACTCCAGCGATATC Rv3488_nonpal_1 sense_pks6_424_from_start 8 21 - 7.05882 0.000236 0.0788 ATACGCTGTTATCG Rv3488_nonpal_1 sense_pks6_423_from_start 8 21 - 7.05882 0.000236 0.0788 ATACGCTGTTATCG Rv3488_nonpal_1 antisense_pks6_430_from_start 27 40 + 7.05882 0.000236 0.0788 ATACGCTGTTATCG Rv3488_nonpal_1 antisense_pks6_431_from_start 27 40 + 7.05882 0.000236 0.0788 ATACGCTGTTATCG Rv3574_pal_1 sense_fadE7_118_to_stop 1 16 + 8.94203 0.000239 0.225 CGGCAACGGGATATCG Rv3574_pal_1 sense_fadE7_118_to_stop 1 16 - 8.94203 0.000239 0.225 CGATATCCCGTTGCCG Rv3574_pal_1 antisense_fadE7_121_to_stop 22 37 + 8.94203 0.000239 0.225 CGATATCCCGTTGCCG Rv3574_pal_1 antisense_fadE7_121_to_stop 22 37 - 8.94203 0.000239 0.225 CGGCAACGGGATATCG Rv2009_pal_1 antisense_fadE7_121_to_stop 2 30 + 7.33577 0.000241 0.0884 CGGATGACCGGGTACTCCAGCGATATCCC Rv2009_pal_1 sense_fadE7_118_to_stop 8 36 + 7.33577 0.000241 0.0884 GGGATATCGCTGGAGTACCCGGTCATCCG Rv2009_pal_1 antisense_fadE7_121_to_stop 2 30 - 7.33577 0.000241 0.0884 GGGATATCGCTGGAGTACCCGGTCATCCG Rv2009_pal_1 sense_fadE7_118_to_stop 8 36 - 7.33577 0.000241 0.0884 CGGATGACCGGGTACTCCAGCGATATCCC Rv1674c_pal_1 sense_mmpL4_1184_to_stop 17 38 + 7.1875 0.000242 0.0499 CTGGAGACCAATTCGAAGCTAT Rv1674c_pal_1 sense_mmpL4_1184_to_stop 17 38 - 7.1875 0.000242 0.0499 ATAGCTTCGAATTGGTCTCCAG Rv3246c_pal_1 antisense_mmpL4_1187_to_stop 3 18 + 9.23171 0.000243 0.069 GCTTCGAATTGGTCTC Rv3246c_pal_1 antisense_mmpL4_1187_to_stop 3 18 - 9.23171 0.000243 0.069 GAGACCAATTCGAAGC Rv3246c_pal_1 sense_mmpL4_1184_to_stop 20 35 + 9.23171 0.000243 0.069 GAGACCAATTCGAAGC Rv3246c_pal_1 sense_mmpL4_1184_to_stop 20 35 - 9.23171 0.000243 0.069 GCTTCGAATTGGTCTC Rv3488_pal_2 10_up_of_Rv1866 26 33 + 3.32558 0.000243 0.146 CGATATGG Rv3488_pal_2 10_up_of_Rv1866 26 33 - 3.32558 0.000243 0.146 CCATATCG Rv1990c_nonpal_1 93_up_of_lpqG 16 26 - 9.4 0.000244 0.64 TGGCATCGACG Rv0494_nonpal_1 antisense_Rv1251c_1309_from_start 4 23 - 6.69136 0.000249 0.984 CGCTGGAGCCGCTGTACCTC Rv0576_nonpal_1 antisense_rocA_790_to_stop 6 31 - 7.875 0.00025 0.0571 GGTACCAATATCGGCCGCTACCATAG Rv1556_nonpal_1 sense_Rv2963_537_to_stop 16 32 - 4.74468 0.00025 0.182 GAACGATTCGGGTACCC Rv1556_nonpal_1 antisense_Rv2963_530_to_stop 16 32 + 4.74468 0.00025 0.182 GAACGATTCGGGTACCC Rv0324_nonpal_1 antisense_Rv2279_293_to_stop 9 16 - 10.5 0.000254 0.0796 CATCGATC Rv0324_nonpal_1 sense_Rv2279_300_to_stop 32 39 + 10.5 0.000254 0.0796 CATCGATC Rv3488_nonpal_2 1688_down_of_Rv3180c 4 31 - -17.5532 0.000258 0.0931 ACTGATCGGTGTACTTATAACCGACACT Rv3488_nonpal_2 6730_up_of_Rv3188 4 31 - -17.5532 0.000258 0.0931 ACTGATCGGTGTACTTATAACCGACACT Rv3488_nonpal_2 9767_down_of_Rv3190c 4 31 - -17.5532 0.000258 0.0931 ACTGATCGGTGTACTTATAACCGACACT Rv3488_nonpal_2 5195_up_of_Rv3186 4 31 - -17.5532 0.000258 0.0931 ACTGATCGGTGTACTTATAACCGACACT Rv3488_nonpal_2 49_up_of_Rv3179 4 31 - -17.5532 0.000258 0.0931 ACTGATCGGTGTACTTATAACCGACACT Rv0818_nonpal_1 sense_gca_460_from_start 2 22 - 5 0.000259 0.156 GATACGCCAGCATGTCGGTGG Rv2359_nonpal_1 antisense_frdA_787_from_start 12 39 - -8.57692 0.00026 0.0602 AAGACGGCTACCGCTACCTCCAGGATTA Rv0081_nonpal_2 10_up_of_Rv1866 7 28 - -12.4904 0.00026 0.162 TCGGTGCCTCCAGCAGAACAGC Rv3124_nonpal_1 antisense_Rv2963_530_to_stop 1 27 - -4.01923 0.000265 0.0827 CCCGAATCGTTCTGGCAGAGCTTCTTT Rv1776c_nonpal_1 sense_pks6_423_from_start 6 11 - 9.80822 0.000269 0.415 ATCGCA Rv1776c_nonpal_1 sense_pks6_424_from_start 6 11 - 9.80822 0.000269 0.415 ATCGCA Rv0022c_nonpal_1 sense_treZ_467_to_stop 17 31 - 8.91781 0.000269 0.141 TGAAACGGGCTGGAG Rv0022c_nonpal_1 877_up_of_treZ 17 31 - 8.91781 0.000269 0.141 TGAAACGGGCTGGAG Rv0022c_nonpal_1 880_up_of_treZ 7 21 + 8.91781 0.000269 0.141 TGAAACGGGCTGGAG Rv0022c_nonpal_1 antisense_treZ_470_to_stop 7 21 + 8.91781 0.000269 0.141 TGAAACGGGCTGGAG Rv0022c_nonpal_1 antisense_treY_785_to_stop 7 21 + 8.91781 0.000269 0.141 TGAAACGGGCTGGAG Rv0273c_nonpal_1 sense_pks6_423_from_start 3 27 - 8.275 0.000271 0.198 ATCTGGATACGCTGTTATCGCACAC Rv0273c_nonpal_1 sense_pks6_424_from_start 3 27 - 8.275 0.000271 0.198 ATCTGGATACGCTGTTATCGCACAC Rv3681c_nonpal_1 37_up_of_Rv2172c 2 21 - 7.3038 0.000272 0.179 CTGGAGCATGGCTCGGAGTA Rv3681c_nonpal_1 sense_mptA_23_from_start 2 21 - 7.3038 0.000272 0.179 CTGGAGCATGGCTCGGAGTA Rv1049_nonpal_2 sense_bioB_253_to_stop 26 40 - 8.85333 0.000272 0.0547 CGTCACCGACCGGCA Rv3488_nonpal_1 antisense_gca_467_from_start 13 26 + 6.64706 0.000272 0.0788 GACTTGTGATATTG Rv3488_nonpal_1 sense_gca_460_from_start 22 35 - 6.64706 0.000272 0.0788 GACTTGTGATATTG Rv0880_nonpal_1 antisense_pyrC_541_to_stop 5 28 - 2.65263 0.000272 0.138 ATTTCGATCACCGCCGAGGTCACC Rv2989_nonpal_2 antisense_aldA_642_from_start 25 39 + 6.94253 0.000275 0.991 GACGATGTTGACAAC Rv0691c_pal_1 sense_PPE24_1577_to_stop 18 29 + 9.37681 0.000277 0.0548 GGTATCACAATC Rv0691c_pal_1 sense_PPE24_1277_to_stop 18 29 + 9.37681 0.000277 0.0548 GGTATCACAATC Rv0691c_pal_1 sense_PPE24_1352_to_stop 18 29 + 9.37681 0.000277 0.0548 GGTATCACAATC Rv0691c_pal_1 antisense_PPE24_1345_to_stop 19 30 + 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 antisense_PPE24_1270_to_stop 19 30 + 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 antisense_PPE24_1570_to_stop 19 30 + 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 sense_PPE24_1277_to_stop 18 29 - 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 sense_PPE24_1352_to_stop 18 29 - 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 sense_PPE24_1577_to_stop 18 29 - 9.37681 0.000277 0.0548 GATTGTGATACC Rv0691c_pal_1 antisense_PPE24_1345_to_stop 19 30 - 9.37681 0.000277 0.0548 GGTATCACAATC Rv0691c_pal_1 antisense_PPE24_1570_to_stop 19 30 - 9.37681 0.000277 0.0548 GGTATCACAATC Rv0691c_pal_1 antisense_PPE24_1270_to_stop 19 30 - 9.37681 0.000277 0.0548 GGTATCACAATC Rv0047c_nonpal_2 antisense_pks6_430_from_start 7 34 + -23.0855 0.000279 0.126 TTCGTGAACCCACGATCTGGATACGCTG Rv0047c_nonpal_2 antisense_pks6_431_from_start 7 34 + -23.0855 0.000279 0.126 TTCGTGAACCCACGATCTGGATACGCTG Rv3246c_pal_1 antisense_aldA_642_from_start 23 38 + 9.0122 0.00028 0.069 GTGACGATGTTGACAA Rv3246c_pal_1 antisense_aldA_642_from_start 23 38 - 9.0122 0.00028 0.069 TTGTCAACATCGTCAC Rv1049_nonpal_2 sense_Rv2038c_183_from_start 22 36 - 8.78667 0.000281 0.0547 GCTCGCCGATCCGGA Rv0022c_pal_1 antisense_Rv2963_530_to_stop 2 23 + 8.47297 0.000282 0.109 AAGAAGCTCTGCCAGAACGATT Rv0022c_pal_1 antisense_Rv2963_530_to_stop 2 23 - 8.47297 0.000282 0.109 AATCGTTCTGGCAGAGCTTCTT Rv0324_nonpal_1 sense_metA_384_from_start 15 22 + 10.2647 0.000283 0.0796 CGCTGATC Rv0324_nonpal_1 antisense_metA_391_from_start 26 33 - 10.2647 0.000283 0.0796 CGCTGATC Rv0081_nonpal_1 antisense_aldA_642_from_start 22 36 + 7.6 0.000283 0.218 GGTGACGATGTTGAC Rv1423_pal_1 9754_down_of_Rv3190c 1 12 + 9.17808 0.000284 0.127 GGGGCACGCCGA Rv1423_pal_1 1675_down_of_Rv3180c 1 12 + 9.17808 0.000284 0.127 GGGGCACGCCGA Rv1423_pal_1 6717_up_of_Rv3188 1 12 + 9.17808 0.000284 0.127 GGGGCACGCCGA Rv1423_pal_1 5182_up_of_Rv3186 1 12 + 9.17808 0.000284 0.127 GGGGCACGCCGA Rv1423_pal_1 36_up_of_Rv3179 1 12 + 9.17808 0.000284 0.127 GGGGCACGCCGA Rv1423_pal_1 9754_down_of_Rv3190c 1 12 - 9.17808 0.000284 0.127 TCGGCGTGCCCC Rv1423_pal_1 36_up_of_Rv3179 1 12 - 9.17808 0.000284 0.127 TCGGCGTGCCCC Rv1423_pal_1 6717_up_of_Rv3188 1 12 - 9.17808 0.000284 0.127 TCGGCGTGCCCC Rv1423_pal_1 1675_down_of_Rv3180c 1 12 - 9.17808 0.000284 0.127 TCGGCGTGCCCC Rv1423_pal_1 5182_up_of_Rv3186 1 12 - 9.17808 0.000284 0.127 TCGGCGTGCCCC Rv1359_nonpal_1 antisense_accA1_595_from_start 7 34 + -1.65385 0.000286 0.068 CACAAACCGCTCCAGGAATAGCGTATCG Rv1359_nonpal_1 sense_accA1_598_from_start 4 31 - -1.65385 0.000286 0.068 CACAAACCGCTCCAGGAATAGCGTATCG Rv0691c_nonpal_1 antisense_aldA_642_from_start 27 40 + 8.75 0.000287 0.191 CGATGTTGACAACG Rv0135c_nonpal_1 antisense_cobK_311_from_start 15 25 + 10.0312 0.000289 0.258 GCGGTACCGGG Rv0135c_nonpal_1 sense_cobK_304_from_start 23 33 - 10.0312 0.000289 0.258 GCGGTACCGGG Rv1816_pal_2 antisense_Rv0370c_389_from_start 4 12 + 10.3014 0.00029 0.267 CGATGAGCA Rv1816_pal_2 antisense_Rv0370c_389_from_start 4 12 - 10.3014 0.00029 0.267 TGCTCATCG Rv1473A_nonpal_2 antisense_metA_391_from_start 23 30 + 9.45205 0.00029 0.066 CGAGATCA Rv1473A_nonpal_2 sense_metA_384_from_start 18 25 - 9.45205 0.00029 0.066 CGAGATCA Rv1556_nonpal_1 sense_PPE24_1352_to_stop 7 23 - 4.24468 0.000293 0.182 GATACCCGCGGGTATCG Rv1556_nonpal_1 sense_PPE24_1277_to_stop 7 23 - 4.24468 0.000293 0.182 GATACCCGCGGGTATCG Rv1556_nonpal_1 sense_PPE24_1577_to_stop 7 23 - 4.24468 0.000293 0.182 GATACCCGCGGGTATCG Rv2788_nonpal_2 antisense_pyrC_541_to_stop 13 40 + -8.61628 0.000293 0.149 CGGCGGTGATCGAAATACCCTGGTCCTT Rv2788_nonpal_2 sense_pyrC_548_to_stop 8 35 - -8.61628 0.000293 0.149 CGGCGGTGATCGAAATACCCTGGTCCTT Rv0967_pal_1 antisense_fadE7_121_to_stop 4 10 + 10.2941 0.000294 0.211 GATGACC Rv0967_pal_1 antisense_fadE7_121_to_stop 4 10 - 10.2941 0.000294 0.211 GGTCATC Rv0967_pal_1 antisense_pyrC_541_to_stop 17 23 + 10.2941 0.000294 0.211 GGTGATC Rv0967_pal_1 antisense_pyrC_541_to_stop 17 23 - 10.2941 0.000294 0.211 GATCACC Rv0967_pal_1 sense_pyrC_548_to_stop 25 31 + 10.2941 0.000294 0.211 GATCACC Rv0967_pal_1 sense_fadE7_118_to_stop 28 34 + 10.2941 0.000294 0.211 GGTCATC Rv0967_pal_1 sense_pyrC_548_to_stop 25 31 - 10.2941 0.000294 0.211 GGTGATC Rv0967_pal_1 sense_fadE7_118_to_stop 28 34 - 10.2941 0.000294 0.211 GATGACC Rv0691c_nonpal_1 5195_up_of_Rv3186 3 16 - 8.6875 0.000295 0.191 TATAACCGACACTG Rv0691c_nonpal_1 6730_up_of_Rv3188 3 16 - 8.6875 0.000295 0.191 TATAACCGACACTG Rv0691c_nonpal_1 49_up_of_Rv3179 3 16 - 8.6875 0.000295 0.191 TATAACCGACACTG Rv0691c_nonpal_1 9767_down_of_Rv3190c 3 16 - 8.6875 0.000295 0.191 TATAACCGACACTG Rv0691c_nonpal_1 1688_down_of_Rv3180c 3 16 - 8.6875 0.000295 0.191 TATAACCGACACTG Rv2011c_nonpal_1 antisense_Rv1251c_1309_from_start 17 35 + 8.91429 0.000297 0.296 TCCAGCGCCTTCAAGCTGA Rv3736_pal_1 antisense_mmpL4_1187_to_stop 6 20 + 8.72143 0.000299 0.346 TCGAATTGGTCTCCA Rv3736_pal_1 sense_mmpL4_1184_to_stop 18 32 + 8.72143 0.000299 0.346 TGGAGACCAATTCGA Rv3736_pal_1 antisense_mmpL4_1187_to_stop 6 20 - 8.72143 0.000299 0.346 TGGAGACCAATTCGA Rv3736_pal_1 sense_mmpL4_1184_to_stop 18 32 - 8.72143 0.000299 0.346 TCGAATTGGTCTCCA Rv1404_nonpal_1 sense_PPE24_1277_to_stop 4 29 + 7.325 0.000299 0.0347 TGACGATACCCGCGGGTATCACAATC Rv1404_nonpal_1 sense_PPE24_1577_to_stop 4 29 + 7.325 0.000299 0.0347 TGACGATACCCGCGGGTATCACAATC Rv1404_nonpal_1 sense_PPE24_1352_to_stop 4 29 + 7.325 0.000299 0.0347 TGACGATACCCGCGGGTATCACAATC Rv3246c_nonpal_1 sense_pks6_424_from_start 15 34 + 7.69136 0.000301 0.0747 AGCGTATCCAGATCGTGGGT Rv3246c_nonpal_1 sense_pks6_423_from_start 15 34 + 7.69136 0.000301 0.0747 AGCGTATCCAGATCGTGGGT Rv3246c_nonpal_1 antisense_pks6_431_from_start 14 33 - 7.69136 0.000301 0.0747 AGCGTATCCAGATCGTGGGT Rv3246c_nonpal_1 antisense_pks6_430_from_start 14 33 - 7.69136 0.000301 0.0747 AGCGTATCCAGATCGTGGGT Rv0324_nonpal_1 antisense_pyrC_541_to_stop 16 23 + 10.2353 0.000302 0.0796 CGGTGATC Rv0324_nonpal_1 sense_pyrC_548_to_stop 25 32 - 10.2353 0.000302 0.0796 CGGTGATC Rv0047c_nonpal_1 antisense_metA_391_from_start 16 30 + 9.03125 0.000305 0.212 CACGTATCGAGATCA Rv0047c_nonpal_1 sense_metA_384_from_start 18 32 - 9.03125 0.000305 0.212 CACGTATCGAGATCA Rv1994c_nonpal_1 sense_mmpL4_1184_to_stop 19 33 + 8.79452 0.000308 0.148 GGAGACCAATTCGAA Rv1994c_nonpal_1 antisense_mmpL4_1187_to_stop 5 19 - 8.79452 0.000308 0.148 GGAGACCAATTCGAA Rv0691c_pal_1 sense_rocA_797_to_stop 17 28 + 9.21739 0.000309 0.0548 GGTACCAATATC Rv0691c_pal_1 antisense_rocA_790_to_stop 20 31 + 9.21739 0.000309 0.0548 GATATTGGTACC Rv0691c_pal_1 sense_rocA_797_to_stop 17 28 - 9.21739 0.000309 0.0548 GATATTGGTACC Rv0691c_pal_1 antisense_rocA_790_to_stop 20 31 - 9.21739 0.000309 0.0548 GGTACCAATATC Rv1473A_nonpal_2 antisense_Rv3282_217_to_stop 19 26 + 9.39726 0.000309 0.066 CCAGATCG Rv1473A_nonpal_2 447_down_of_accE5 19 26 + 9.39726 0.000309 0.066 CCAGATCG Rv1473A_nonpal_2 sense_pks6_423_from_start 22 29 + 9.39726 0.000309 0.066 CCAGATCG Rv1473A_nonpal_2 sense_pks6_424_from_start 22 29 + 9.39726 0.000309 0.066 CCAGATCG Rv1473A_nonpal_2 antisense_pks6_431_from_start 19 26 - 9.39726 0.000309 0.066 CCAGATCG Rv1473A_nonpal_2 antisense_pks6_430_from_start 19 26 - 9.39726 0.000309 0.066 CCAGATCG Rv0023_nonpal_2 antisense_cobK_311_from_start 1 28 + -22.8462 0.00031 0.125 ATACCGCGATGATGGCGGTACCGGGATC Rv0880_nonpal_1 sense_Rv1461_552_from_start 4 27 + 2.22105 0.00031 0.138 CAAGGAATATTTCGGTACAGTAAT Rv0880_nonpal_1 sense_mptA_23_from_start 12 35 - 2.2 0.000312 0.138 AGCCAAATCAACCGCTGGAGCATG Rv0880_nonpal_1 37_up_of_Rv2172c 12 35 - 2.2 0.000312 0.138 AGCCAAATCAACCGCTGGAGCATG Rv3246c_nonpal_1 antisense_gca_467_from_start 12 31 + 7.60494 0.000313 0.0747 AGACTTGTGATATTGATACG Rv3246c_nonpal_1 sense_gca_460_from_start 17 36 - 7.60494 0.000313 0.0747 AGACTTGTGATATTGATACG Rv2324_pal_1 6717_up_of_Rv3188 6 20 + 8.71429 0.000313 0.105 ACGCCGACTCCTTGT Rv2324_pal_1 9754_down_of_Rv3190c 6 20 + 8.71429 0.000313 0.105 ACGCCGACTCCTTGT Rv2324_pal_1 1675_down_of_Rv3180c 6 20 + 8.71429 0.000313 0.105 ACGCCGACTCCTTGT Rv2324_pal_1 36_up_of_Rv3179 6 20 + 8.71429 0.000313 0.105 ACGCCGACTCCTTGT Rv2324_pal_1 5182_up_of_Rv3186 6 20 + 8.71429 0.000313 0.105 ACGCCGACTCCTTGT Rv2324_pal_1 1675_down_of_Rv3180c 6 20 - 8.71429 0.000313 0.105 ACAAGGAGTCGGCGT Rv2324_pal_1 9754_down_of_Rv3190c 6 20 - 8.71429 0.000313 0.105 ACAAGGAGTCGGCGT Rv2324_pal_1 36_up_of_Rv3179 6 20 - 8.71429 0.000313 0.105 ACAAGGAGTCGGCGT Rv2324_pal_1 6717_up_of_Rv3188 6 20 - 8.71429 0.000313 0.105 ACAAGGAGTCGGCGT Rv2324_pal_1 5182_up_of_Rv3186 6 20 - 8.71429 0.000313 0.105 ACAAGGAGTCGGCGT Rv2788_pal_2 antisense_rocA_790_to_stop 5 25 + 5.54167 0.000314 0.177 GCTATGGTAGCGGCCGATATT Rv2788_pal_2 antisense_rocA_790_to_stop 5 25 - 5.54167 0.000314 0.177 AATATCGGCCGCTACCATAGC Rv1846c_nonpal_1 sense_gca_460_from_start 1 22 - -2.82979 0.000316 0.274 GATACGCCAGCATGTCGGTGGC Rv1990c_nonpal_1 antisense_cobK_311_from_start 7 17 - 9.01538 0.000317 0.64 CGCCATCATCG Rv3488_pal_2 1662_up_of_Rv2018 33 40 + 2.84884 0.000319 0.146 CAAGATCG Rv3488_pal_2 1662_up_of_Rv2018 33 40 - 2.84884 0.000319 0.146 CGATCTTG Rv1353c_nonpal_1 13071_down_of_Rv3190c 9 23 - 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 4992_down_of_Rv3180c 9 23 - 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 8499_up_of_Rv3186 9 23 - 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 3353_up_of_Rv3179 9 23 - 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 10034_up_of_Rv3188 9 23 - 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 8506_up_of_Rv3186 25 39 + 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 3360_up_of_Rv3179 25 39 + 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 13078_down_of_Rv3190c 25 39 + 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 4999_down_of_Rv3180c 25 39 + 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1353c_nonpal_1 10041_up_of_Rv3188 25 39 + 8.87879 0.000322 0.0832 AATCGGTTTACTGTA Rv1994c_pal_1 antisense_Rv2963_530_to_stop 13 27 + 8.63514 0.000322 0.105 CCAGAACGATTCGGG Rv1994c_pal_1 sense_Rv2963_537_to_stop 21 35 + 8.63514 0.000322 0.105 CCCGAATCGTTCTGG Rv1994c_pal_1 antisense_Rv2963_530_to_stop 13 27 - 8.63514 0.000322 0.105 CCCGAATCGTTCTGG Rv1994c_pal_1 sense_Rv2963_537_to_stop 21 35 - 8.63514 0.000322 0.105 CCAGAACGATTCGGG Rv2506_pal_1 sense_PPE24_1352_to_stop 8 23 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 sense_PPE24_1277_to_stop 8 23 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 sense_PPE24_1577_to_stop 8 23 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 sense_PPE24_1352_to_stop 8 23 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 sense_PPE24_1577_to_stop 8 23 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 sense_PPE24_1277_to_stop 8 23 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1570_to_stop 25 40 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1270_to_stop 25 40 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1345_to_stop 25 40 + 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1570_to_stop 25 40 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1345_to_stop 25 40 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv2506_pal_1 antisense_PPE24_1270_to_stop 25 40 - 6.61053 0.000324 0.0964 GATACCCGCGGGTATC Rv3416_nonpal_1 447_down_of_accE5 1 25 - 2.18557 0.000325 0.47 GATCTGGAGGCTTACCTGGCCAGTG Rv3416_nonpal_1 antisense_Rv3282_217_to_stop 1 25 - 2.18557 0.000325 0.47 GATCTGGAGGCTTACCTGGCCAGTG Rv3246c_pal_1 sense_pks9_325_to_stop 3 18 + 8.78049 0.000325 0.069 ACTACGCAATCGTCTC Rv3246c_pal_1 sense_pks9_325_to_stop 3 18 - 8.78049 0.000325 0.069 GAGACGATTGCGTAGT Rv0158_nonpal_1 13078_down_of_Rv3190c 7 31 - -1.20755 0.000326 0.114 ACCGATTGGTGTACTTTGTGCTTTG Rv0158_nonpal_1 4999_down_of_Rv3180c 7 31 - -1.20755 0.000326 0.114 ACCGATTGGTGTACTTTGTGCTTTG Rv0158_nonpal_1 10041_up_of_Rv3188 7 31 - -1.20755 0.000326 0.114 ACCGATTGGTGTACTTTGTGCTTTG Rv0158_nonpal_1 3360_up_of_Rv3179 7 31 - -1.20755 0.000326 0.114 ACCGATTGGTGTACTTTGTGCTTTG Rv0158_nonpal_1 8506_up_of_Rv3186 7 31 - -1.20755 0.000326 0.114 ACCGATTGGTGTACTTTGTGCTTTG Rv1994c_nonpal_1 sense_Rv1461_552_from_start 5 19 + 8.69863 0.000327 0.148 AAGGAATATTTCGGT Rv1473A_nonpal_2 antisense_pyrC_541_to_stop 17 24 + 9.26027 0.000328 0.066 GGTGATCG Rv1473A_nonpal_2 sense_pyrC_548_to_stop 24 31 - 9.26027 0.000328 0.066 GGTGATCG Rv1219c_pal_1 antisense_Rv1251c_1309_from_start 30 38 + 8.91139 0.000334 0.194 AGCTGAACG Rv1219c_pal_1 antisense_Rv1251c_1309_from_start 30 38 - 8.91139 0.000334 0.194 CGTTCAGCT Rv0081_nonpal_2 5195_up_of_Rv3186 5 26 - -13.7019 0.000341 0.162 TCGGTGTACTTATAACCGACAC Rv0081_nonpal_2 1688_down_of_Rv3180c 5 26 - -13.7019 0.000341 0.162 TCGGTGTACTTATAACCGACAC Rv0081_nonpal_2 6730_up_of_Rv3188 5 26 - -13.7019 0.000341 0.162 TCGGTGTACTTATAACCGACAC Rv0081_nonpal_2 9767_down_of_Rv3190c 5 26 - -13.7019 0.000341 0.162 TCGGTGTACTTATAACCGACAC Rv0081_nonpal_2 49_up_of_Rv3179 5 26 - -13.7019 0.000341 0.162 TCGGTGTACTTATAACCGACAC Rv2034_pal_2 sense_bioB_253_to_stop 8 14 + 11.0253 0.000343 0.542 TCGCCGA Rv2034_pal_2 sense_bioB_253_to_stop 8 14 - 11.0253 0.000343 0.542 TCGGCGA Rv2034_pal_2 sense_Rv2038c_183_from_start 28 34 + 11.0253 0.000343 0.542 TCGGCGA Rv2034_pal_2 sense_Rv2038c_183_from_start 28 34 - 11.0253 0.000343 0.542 TCGCCGA Rv2642_pal_1 antisense_Rv1461_416_from_start 1 21 + 7.2069 0.000343 0.277 TCGTATTGTGCGGCTACTCCA Rv2642_pal_1 antisense_Rv1461_416_from_start 1 21 - 7.2069 0.000343 0.277 TGGAGTAGCCGCACAATACGA Rv1167c_nonpal_1 sense_Rv1461_552_from_start 5 19 - 4.11538 0.000346 0.56 ACCGAAATATTCCTT Rv1990c_nonpal_1 sense_gca_460_from_start 6 16 + 8.86154 0.000351 0.64 CGACATGCTGG Rv3249c_pal_1 sense_mmpL4_1184_to_stop 3 14 + 8.70769 0.000353 0.201 GATTTTGATGAT Rv3249c_pal_1 sense_mmpL4_1184_to_stop 3 14 - 8.70769 0.000353 0.201 ATCATCAAAATC Rv3249c_pal_1 antisense_mmpL4_1187_to_stop 24 35 + 8.70769 0.000353 0.201 ATCATCAAAATC Rv3249c_pal_1 antisense_mmpL4_1187_to_stop 24 35 - 8.70769 0.000353 0.201 GATTTTGATGAT Rv3246c_pal_1 sense_pks9_325_to_stop 14 29 + 8.64634 0.000354 0.069 GTCTCCAGATGGCTAT Rv3246c_pal_1 sense_pks9_325_to_stop 14 29 - 8.64634 0.000354 0.069 ATAGCCATCTGGAGAC Rv0022c_pal_1 antisense_Rv1461_472_from_start 6 27 + 8.04054 0.000355 0.109 ACTCCTTGAGCCTCCAGATCCT Rv0022c_pal_1 sense_Rv1461_475_from_start 11 32 + 8.04054 0.000355 0.109 AGGATCTGGAGGCTCAAGGAGT Rv0022c_pal_1 antisense_Rv1461_472_from_start 6 27 - 8.04054 0.000355 0.109 AGGATCTGGAGGCTCAAGGAGT Rv0022c_pal_1 sense_Rv1461_475_from_start 11 32 - 8.04054 0.000355 0.109 ACTCCTTGAGCCTCCAGATCCT Rv3488_pal_1 sense_pks6_424_from_start 8 15 + 6.66176 0.000358 0.0924 CGATAACA Rv3488_pal_1 sense_pks6_423_from_start 8 15 + 6.66176 0.000358 0.0924 CGATAACA Rv3488_pal_1 sense_pks6_424_from_start 8 15 - 6.66176 0.000358 0.0924 TGTTATCG Rv3488_pal_1 sense_pks6_423_from_start 8 15 - 6.66176 0.000358 0.0924 TGTTATCG Rv3488_pal_1 antisense_pks6_431_from_start 33 40 + 6.66176 0.000358 0.0924 TGTTATCG Rv3488_pal_1 antisense_pks6_430_from_start 33 40 + 6.66176 0.000358 0.0924 TGTTATCG Rv3488_pal_1 antisense_pks6_431_from_start 33 40 - 6.66176 0.000358 0.0924 CGATAACA Rv3488_pal_1 antisense_pks6_430_from_start 33 40 - 6.66176 0.000358 0.0924 CGATAACA Rv2250c_nonpal_2 antisense_frdA_787_from_start 6 33 - -38.0598 0.000359 0.292 GCTACCGCTACCTCCAGGATTACGACCT Rv1353c_nonpal_1 sense_Rv2279_300_to_stop 1 15 + 8.71212 0.000362 0.0886 ATCCACCATACGGAT Rv2034_nonpal_1 antisense_Rv0370c_389_from_start 25 35 - 8.94118 0.000364 0.253 CCGCGGACCGA Rv0047c_nonpal_1 sense_fadE7_118_to_stop 8 22 + 8.73438 0.000367 0.212 GGGATATCGCTGGAG Rv0047c_nonpal_1 antisense_fadE7_121_to_stop 16 30 - 8.73438 0.000367 0.212 GGGATATCGCTGGAG Rv0047c_nonpal_1 1662_up_of_Rv2018 22 36 - 8.73438 0.000367 0.212 CTTGTATCAATTTCA Rv0981_nonpal_1 sense_pks6_423_from_start 9 36 + -5.83019 0.000369 0.136 GATAACAGCGTATCCAGATCGTGGGTTC Rv0981_nonpal_1 sense_pks6_424_from_start 9 36 + -5.83019 0.000369 0.136 GATAACAGCGTATCCAGATCGTGGGTTC Rv0981_nonpal_1 antisense_pks6_431_from_start 12 39 - -5.83019 0.000369 0.136 GATAACAGCGTATCCAGATCGTGGGTTC Rv0981_nonpal_1 antisense_pks6_430_from_start 12 39 - -5.83019 0.000369 0.136 GATAACAGCGTATCCAGATCGTGGGTTC Rv1473A_nonpal_2 9760_down_of_Rv3190c 17 24 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 42_up_of_Rv3179 17 24 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 1681_down_of_Rv3180c 17 24 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 5188_up_of_Rv3186 17 24 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 6723_up_of_Rv3188 17 24 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 1675_down_of_Rv3180c 23 30 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 36_up_of_Rv3179 23 30 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 5182_up_of_Rv3186 23 30 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 9754_down_of_Rv3190c 23 30 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 6717_up_of_Rv3188 23 30 + 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 5189_up_of_Rv3186 18 25 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 43_up_of_Rv3179 18 25 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 6724_up_of_Rv3188 18 25 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 9761_down_of_Rv3190c 18 25 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 1682_down_of_Rv3180c 18 25 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 6730_up_of_Rv3188 24 31 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 1688_down_of_Rv3180c 24 31 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 49_up_of_Rv3179 24 31 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 5195_up_of_Rv3186 24 31 - 8.67123 0.000373 0.066 ACTGATCG Rv1473A_nonpal_2 9767_down_of_Rv3190c 24 31 - 8.67123 0.000373 0.066 ACTGATCG Rv2324_pal_1 sense_fadE7_118_to_stop 3 17 + 8.35065 0.000378 0.105 GCAACGGGATATCGC Rv2324_pal_1 sense_fadE7_118_to_stop 3 17 - 8.35065 0.000378 0.105 GCGATATCCCGTTGC Rv2324_pal_1 antisense_fadE7_121_to_stop 21 35 + 8.35065 0.000378 0.105 GCGATATCCCGTTGC Rv2324_pal_1 antisense_fadE7_121_to_stop 21 35 - 8.35065 0.000378 0.105 GCAACGGGATATCGC Rv0117_nonpal_1 sense_mptA_23_from_start 5 31 + -4.89423 0.000379 0.0949 TCCGAGCCATGCTCCAGCGGTTGATTT Rv0117_nonpal_1 37_up_of_Rv2172c 5 31 + -4.89423 0.000379 0.0949 TCCGAGCCATGCTCCAGCGGTTGATTT Rv1846c_nonpal_1 antisense_Rv1461_559_from_start 1 22 - -3.54255 0.000381 0.274 ATCCCTGCCGGCGATAATAAGT Rv2021c_nonpal_1 sense_metA_384_from_start 6 26 + 7.25301 0.000381 0.0539 CAAGATTTCCGCTGATCTCGA Rv1404_nonpal_1 antisense_rocA_790_to_stop 6 31 + 6.7875 0.000382 0.0347 CTATGGTAGCGGCCGATATTGGTACC Rv0767c_nonpal_1 antisense_metA_391_from_start 11 25 + 8.38571 0.000383 0.445 CTGGTCACGTATCGA Rv0767c_nonpal_1 sense_metA_384_from_start 23 37 - 8.38571 0.000383 0.445 CTGGTCACGTATCGA Rv2788_nonpal_2 antisense_cobK_311_from_start 4 31 + -9.82558 0.000383 0.149 CCGCGATGATGGCGGTACCGGGATCCCA Rv0047c_nonpal_2 sense_PPE34_1439_from_start 12 39 + -24.6325 0.000383 0.126 ATTCCCTCCAGATTACGTGACAGTGAGT Rv0047c_nonpal_2 sense_PPE34_1664_from_start 12 39 + -24.6325 0.000383 0.126 ATTCCCTCCAGATTACGTGACAGTGAGT Rv0047c_nonpal_2 sense_PPE34_3066_to_stop 12 39 + -24.6325 0.000383 0.126 ATTCCCTCCAGATTACGTGACAGTGAGT Rv0324_nonpal_1 antisense_Rv0370c_389_from_start 1 8 + 9.88235 0.000386 0.0796 CATCGATG Rv0324_nonpal_1 antisense_Rv0370c_389_from_start 1 8 - 9.88235 0.000386 0.0796 CATCGATG Rv2324_pal_1 sense_gca_460_from_start 2 16 + 8.31169 0.000387 0.105 CCACCGACATGCTGG Rv2324_pal_1 sense_gca_460_from_start 2 16 - 8.31169 0.000387 0.105 CCAGCATGTCGGTGG Rv0602c_nonpal_1 antisense_pks6_431_from_start 3 14 - 8.52055 0.00039 0.481 TTCACGAATGCT Rv0602c_nonpal_1 antisense_pks6_430_from_start 3 14 - 8.52055 0.00039 0.481 TTCACGAATGCT Rv2034_nonpal_1 sense_Rv1278_1158_to_stop 25 35 + 8.86765 0.00039 0.253 TCGCTGACCTA Rv0653c_pal_1 sense_PPE24_1577_to_stop 10 33 + 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0653c_pal_1 sense_PPE24_1352_to_stop 10 33 + 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0653c_pal_1 sense_PPE24_1277_to_stop 10 33 + 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0653c_pal_1 antisense_PPE24_1345_to_stop 15 38 + 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 antisense_PPE24_1270_to_stop 15 38 + 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 antisense_PPE24_1570_to_stop 15 38 + 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 sense_PPE24_1352_to_stop 10 33 - 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 sense_PPE24_1277_to_stop 10 33 - 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 sense_PPE24_1577_to_stop 10 33 - 7.48101 0.000392 0.058 CACCGATTGTGATACCCGCGGGTA Rv0653c_pal_1 antisense_PPE24_1345_to_stop 15 38 - 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0653c_pal_1 antisense_PPE24_1570_to_stop 15 38 - 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0653c_pal_1 antisense_PPE24_1270_to_stop 15 38 - 7.48101 0.000392 0.058 TACCCGCGGGTATCACAATCGGTG Rv0818_nonpal_1 antisense_gca_467_from_start 4 24 - 3.73404 0.000392 0.202 ATATCACAAGTCTTACGGCAT Rv2021c_nonpal_1 sense_metA_384_from_start 5 25 - 7.18072 0.000394 0.0539 CGAGATCAGCGGAAATCTTGA Rv1956_pal_1 antisense_aldA_642_from_start 27 34 + 7.97674 0.000396 0.168 CGATGTTG Rv1956_pal_1 antisense_aldA_642_from_start 27 34 - 7.97674 0.000396 0.168 CAACATCG Rv3249c_nonpal_2 sense_pks9_325_to_stop 2 16 - 8.30667 0.0004 0.542 GACGATTGCGTAGTT Rv3849_pal_1 sense_mptA_23_from_start 30 37 + 8.76623 0.0004 0.492 TTGGCTAC Rv3849_pal_1 37_up_of_Rv2172c 30 37 + 8.76623 0.0004 0.492 TTGGCTAC Rv3849_pal_1 37_up_of_Rv2172c 30 37 - 8.76623 0.0004 0.492 GTAGCCAA Rv3849_pal_1 sense_mptA_23_from_start 30 37 - 8.76623 0.0004 0.492 GTAGCCAA Rv0047c_nonpal_1 sense_gca_460_from_start 15 29 + 8.57812 0.000403 0.212 GGCGTATCAATATCA Rv0047c_nonpal_1 antisense_gca_467_from_start 19 33 - 8.57812 0.000403 0.212 GGCGTATCAATATCA Rv1994c_nonpal_1 sense_Rv1461_552_from_start 4 18 + 8.34247 0.000405 0.148 CAAGGAATATTTCGG Rv2021c_nonpal_1 6723_up_of_Rv3188 14 34 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 5188_up_of_Rv3186 14 34 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 1681_down_of_Rv3180c 14 34 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 9760_down_of_Rv3190c 14 34 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 42_up_of_Rv3179 14 34 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 36_up_of_Rv3179 20 40 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 1675_down_of_Rv3180c 20 40 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 9754_down_of_Rv3190c 20 40 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 5182_up_of_Rv3186 20 40 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 6717_up_of_Rv3188 20 40 + 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 5189_up_of_Rv3186 8 28 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 9761_down_of_Rv3190c 8 28 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 1682_down_of_Rv3180c 8 28 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 43_up_of_Rv3179 8 28 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 6724_up_of_Rv3188 8 28 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 5195_up_of_Rv3186 14 34 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 9767_down_of_Rv3190c 14 34 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 49_up_of_Rv3179 14 34 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 1688_down_of_Rv3180c 14 34 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv2021c_nonpal_1 6730_up_of_Rv3188 14 34 - 7.08434 0.000411 0.0539 TATACTGATCGGTGTACTTAT Rv1473A_nonpal_1 antisense_cobK_311_from_start 4 17 + 3.83562 0.000412 0.192 CCGCGATGATGGCG Rv1674c_pal_1 13071_down_of_Rv3190c 11 32 + 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 10034_up_of_Rv3188 11 32 + 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 8499_up_of_Rv3186 11 32 + 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 3353_up_of_Rv3179 11 32 + 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 4992_down_of_Rv3180c 11 32 + 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 4999_down_of_Rv3180c 16 37 + 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 10041_up_of_Rv3188 16 37 + 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 13078_down_of_Rv3190c 16 37 + 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 3360_up_of_Rv3179 16 37 + 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 8506_up_of_Rv3186 16 37 + 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 13071_down_of_Rv3190c 11 32 - 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 10034_up_of_Rv3188 11 32 - 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 8499_up_of_Rv3186 11 32 - 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 3353_up_of_Rv3179 11 32 - 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 4992_down_of_Rv3180c 11 32 - 6.03125 0.000413 0.0499 AAGTACACCAATCGGTTTACTG Rv1674c_pal_1 8506_up_of_Rv3186 16 37 - 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 3360_up_of_Rv3179 16 37 - 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 10041_up_of_Rv3188 16 37 - 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 4999_down_of_Rv3180c 16 37 - 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv1674c_pal_1 13078_down_of_Rv3190c 16 37 - 6.03125 0.000413 0.0499 CAGTAAACCGATTGGTGTACTT Rv2324_nonpal_1 antisense_mmpL4_1187_to_stop 22 40 + 8.34783 0.000413 0.169 AAATCATCAAAATCCGCGA Rv3765c_nonpal_1 antisense_Rv1461_472_from_start 4 23 + 0.821053 0.000414 0.375 TGACTCCTTGAGCCTCCAGA Rv3765c_nonpal_1 sense_Rv1461_475_from_start 15 34 - 0.821053 0.000414 0.375 TGACTCCTTGAGCCTCCAGA Rv0023_pal_1 sense_Rv2038c_183_from_start 18 25 + 9.25316 0.000419 0.474 CGTATCCG Rv0023_pal_1 sense_Rv2038c_183_from_start 18 25 - 9.25316 0.000419 0.474 CGGATACG Rv3133c_pal_1 antisense_gca_467_from_start 3 18 + 8.73973 0.00042 0.221 CATGCCGTAAGACTTG Rv3133c_pal_1 antisense_gca_467_from_start 3 18 - 8.73973 0.00042 0.221 CAAGTCTTACGGCATG Rv0324_nonpal_1 sense_Rv2038c_183_from_start 26 33 - 9.73529 0.000423 0.0796 CGCCGATC Rv0691c_pal_1 antisense_cobK_311_from_start 11 22 + 8.73913 0.000426 0.063 GATGGCGGTACC Rv0691c_pal_1 antisense_cobK_311_from_start 11 22 - 8.73913 0.000426 0.063 GGTACCGCCATC Rv0691c_pal_1 sense_cobK_304_from_start 26 37 + 8.73913 0.000426 0.063 GGTACCGCCATC Rv0691c_pal_1 sense_cobK_304_from_start 26 37 - 8.73913 0.000426 0.063 GATGGCGGTACC Rv0023_nonpal_2 49_up_of_Rv3179 4 31 - -24.4712 0.000426 0.125 ACTGATCGGTGTACTTATAACCGACACT Rv0023_nonpal_2 5195_up_of_Rv3186 4 31 - -24.4712 0.000426 0.125 ACTGATCGGTGTACTTATAACCGACACT Rv0023_nonpal_2 6730_up_of_Rv3188 4 31 - -24.4712 0.000426 0.125 ACTGATCGGTGTACTTATAACCGACACT Rv0023_nonpal_2 1688_down_of_Rv3180c 4 31 - -24.4712 0.000426 0.125 ACTGATCGGTGTACTTATAACCGACACT Rv0023_nonpal_2 9767_down_of_Rv3190c 4 31 - -24.4712 0.000426 0.125 ACTGATCGGTGTACTTATAACCGACACT Rv3830c_nonpal_1 sense_Rv0674_10_to_stop 22 36 + 7.43243 0.000427 0.576 GTGACATGAGTGATC Rv0324_nonpal_1 42_up_of_Rv3179 16 23 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 9760_down_of_Rv3190c 16 23 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 6723_up_of_Rv3188 16 23 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 1681_down_of_Rv3180c 16 23 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 5188_up_of_Rv3186 16 23 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 9754_down_of_Rv3190c 22 29 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 1675_down_of_Rv3180c 22 29 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 6717_up_of_Rv3188 22 29 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 36_up_of_Rv3179 22 29 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 5182_up_of_Rv3186 22 29 + 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 1682_down_of_Rv3180c 19 26 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 9761_down_of_Rv3190c 19 26 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 6724_up_of_Rv3188 19 26 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 43_up_of_Rv3179 19 26 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 5189_up_of_Rv3186 19 26 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 1688_down_of_Rv3180c 25 32 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 6730_up_of_Rv3188 25 32 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 49_up_of_Rv3179 25 32 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 5195_up_of_Rv3186 25 32 - 9.72059 0.000428 0.0796 TACTGATC Rv0324_nonpal_1 9767_down_of_Rv3190c 25 32 - 9.72059 0.000428 0.0796 TACTGATC Rv3488_pal_2 antisense_gca_467_from_start 19 26 + 2.76744 0.00043 0.146 TGATATTG Rv3488_pal_2 sense_gca_460_from_start 22 29 + 2.76744 0.00043 0.146 CAATATCA Rv3488_pal_2 antisense_gca_467_from_start 19 26 - 2.76744 0.00043 0.146 CAATATCA Rv3488_pal_2 sense_gca_460_from_start 22 29 - 2.76744 0.00043 0.146 TGATATTG Rv2788_pal_2 antisense_cobK_311_from_start 8 28 + 4.70833 0.000431 0.177 GATGATGGCGGTACCGGGATC Rv2788_pal_2 sense_cobK_304_from_start 20 40 + 4.70833 0.000431 0.177 GATCCCGGTACCGCCATCATC Rv2788_pal_2 antisense_cobK_311_from_start 8 28 - 4.70833 0.000431 0.177 GATCCCGGTACCGCCATCATC Rv2788_pal_2 sense_cobK_304_from_start 20 40 - 4.70833 0.000431 0.177 GATGATGGCGGTACCGGGATC Rv1353c_nonpal_1 sense_Rv2279_300_to_stop 9 23 - 8.45455 0.000432 0.0894 GATCCCCTATCCGTA Rv1353c_nonpal_1 antisense_Rv2279_293_to_stop 25 39 + 8.45455 0.000432 0.0894 GATCCCCTATCCGTA Rv0472c_nonpal_1 antisense_Rv1461_416_from_start 30 40 + 4.26923 0.000432 0.211 TCTCTGCTTCT Rv3855_nonpal_1 antisense_pyrC_541_to_stop 7 32 - -5.07692 0.000433 1 GGGTATTTCGATCACCGCCGAGGTCA Rv3488_pal_1 antisense_aldA_642_from_start 27 34 + 6.29412 0.000435 0.102 CGATGTTG Rv3488_pal_1 antisense_aldA_642_from_start 27 34 - 6.29412 0.000435 0.102 CAACATCG Rv0302_nonpal_2 sense_pyrC_548_to_stop 25 35 + 9.0641 0.000436 0.614 GATCACCGCCG Rv0302_nonpal_2 antisense_pyrC_541_to_stop 13 23 - 9.0641 0.000436 0.614 GATCACCGCCG Rv2374c_nonpal_1 antisense_fadE7_121_to_stop 3 30 - -1.50962 0.000436 0.175 GGGATATCGCTGGAGTACCCGGTCATCC Rv2374c_nonpal_1 sense_fadE7_118_to_stop 8 35 + -1.50962 0.000436 0.175 GGGATATCGCTGGAGTACCCGGTCATCC Rv3488_nonpal_1 antisense_aldA_642_from_start 21 34 + 5.19118 0.000437 0.119 AGGTGACGATGTTG Rv1473A_pal_2 antisense_pyrC_541_to_stop 18 25 + 9.36986 0.000438 0.0597 GTGATCGA Rv1473A_pal_2 sense_pyrC_548_to_stop 23 30 + 9.36986 0.000438 0.0597 TCGATCAC Rv1473A_pal_2 antisense_pyrC_541_to_stop 18 25 - 9.36986 0.000438 0.0597 TCGATCAC Rv1473A_pal_2 sense_pyrC_548_to_stop 23 30 - 9.36986 0.000438 0.0597 GTGATCGA Rv0767c_nonpal_2 antisense_pyrC_541_to_stop 6 26 - 6.77215 0.000445 0.331 TTCGATCACCGCCGAGGTCAC Rv0047c_pal_1 10_up_of_Rv1866 25 36 + 8.19697 0.000446 0.345 CCGATATGGTGA Rv0047c_pal_1 10_up_of_Rv1866 25 36 - 8.19697 0.000446 0.345 TCACCATATCGG Rv0324_pal_1 antisense_cobK_311_from_start 7 18 + 7.45679 0.000447 0.39 CGATGATGGCGG Rv0324_pal_1 antisense_cobK_311_from_start 7 18 - 7.45679 0.000447 0.39 CCGCCATCATCG Rv0022c_pal_1 sense_accA1_598_from_start 6 27 + 7.58108 0.00045 0.109 ATACGCTATTCCTGGAGCGGTT Rv0022c_pal_1 antisense_accA1_595_from_start 11 32 + 7.58108 0.00045 0.109 AACCGCTCCAGGAATAGCGTAT Rv0022c_pal_1 sense_accA1_598_from_start 6 27 - 7.58108 0.00045 0.109 AACCGCTCCAGGAATAGCGTAT Rv0022c_pal_1 antisense_accA1_595_from_start 11 32 - 7.58108 0.00045 0.109 ATACGCTATTCCTGGAGCGGTT Rv0472c_nonpal_1 1662_up_of_Rv2018 22 32 - 4.16346 0.000451 0.211 TATCAATTTCA Rv2324_nonpal_1 sense_mmpL4_1184_to_stop 18 36 + 8.2029 0.000453 0.169 TGGAGACCAATTCGAAGCT Rv2324_nonpal_1 antisense_mmpL4_1187_to_stop 2 20 - 8.2029 0.000453 0.169 TGGAGACCAATTCGAAGCT Rv1990c_nonpal_1 antisense_aldA_642_from_start 27 37 - 8.47692 0.000454 0.64 TGTCAACATCG Rv2250c_nonpal_1 sense_Rv0674_10_to_stop 21 30 - 8.81159 0.000456 0.237 TCATGTCACC Rv0465c_pal_1 antisense_Rv1461_559_from_start 6 33 + 3.40909 0.000457 0.178 TTATCGCCGGCAGGGATTACTGTACCGA Rv0465c_pal_1 antisense_Rv1461_559_from_start 6 33 - 3.40909 0.000457 0.178 TCGGTACAGTAATCCCTGCCGGCGATAA Rv1556_nonpal_1 sense_PPE24_1277_to_stop 8 24 + 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1556_nonpal_1 sense_PPE24_1577_to_stop 8 24 + 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1556_nonpal_1 sense_PPE24_1352_to_stop 8 24 + 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1556_nonpal_1 antisense_PPE24_1345_to_stop 24 40 - 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1556_nonpal_1 antisense_PPE24_1570_to_stop 24 40 - 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1556_nonpal_1 antisense_PPE24_1270_to_stop 24 40 - 2.78723 0.000458 0.182 GATACCCGCGGGTATCA Rv1255c_pal_1 antisense_PPE24_1270_to_stop 3 28 + 6.89655 0.00046 0.159 GTAGACTAAAGCCACCGATTGTGATA Rv1255c_pal_1 antisense_PPE24_1570_to_stop 3 28 + 6.89655 0.00046 0.159 GTAGACTAAAGCCACCGATTGTGATA Rv1255c_pal_1 antisense_PPE24_1345_to_stop 3 28 + 6.89655 0.00046 0.159 GTAGACTAAAGCCACCGATTGTGATA Rv1255c_pal_1 antisense_PPE24_1570_to_stop 3 28 - 6.89655 0.00046 0.159 TATCACAATCGGTGGCTTTAGTCTAC Rv1255c_pal_1 antisense_PPE24_1345_to_stop 3 28 - 6.89655 0.00046 0.159 TATCACAATCGGTGGCTTTAGTCTAC Rv1255c_pal_1 antisense_PPE24_1270_to_stop 3 28 - 6.89655 0.00046 0.159 TATCACAATCGGTGGCTTTAGTCTAC Rv1674c_nonpal_1 sense_Rv0674_10_to_stop 21 38 + 1.02128 0.000462 0.357 GGTGACATGAGTGATCTG Rv0465c_pal_1 antisense_rocA_790_to_stop 9 36 + 3.375 0.000462 0.178 TGGTAGCGGCCGATATTGGTACCCACCC Rv0465c_pal_1 sense_rocA_797_to_stop 12 39 + 3.375 0.000462 0.178 GGGTGGGTACCAATATCGGCCGCTACCA Rv0465c_pal_1 antisense_rocA_790_to_stop 9 36 - 3.375 0.000462 0.178 GGGTGGGTACCAATATCGGCCGCTACCA Rv0465c_pal_1 sense_rocA_797_to_stop 12 39 - 3.375 0.000462 0.178 TGGTAGCGGCCGATATTGGTACCCACCC Rv2359_nonpal_1 sense_pks6_424_from_start 1 28 - -11.0577 0.000465 0.0838 GATCTGGATACGCTGTTATCGCACACTT Rv2359_nonpal_1 sense_pks6_423_from_start 1 28 - -11.0577 0.000465 0.0838 GATCTGGATACGCTGTTATCGCACACTT Rv0981_nonpal_2 sense_mmpL4_1184_to_stop 13 33 + 4.09474 0.000467 0.232 ATTTCTGGAGACCAATTCGAA Rv0981_nonpal_2 antisense_mmpL4_1187_to_stop 5 25 - 4.09474 0.000467 0.232 ATTTCTGGAGACCAATTCGAA Rv0081_nonpal_1 sense_bioB_253_to_stop 1 15 - 6.4 0.000468 0.218 GTCGGCGAACGGGGT Rv2250c_nonpal_1 antisense_treZ_470_to_stop 4 13 + 8.73913 0.000469 0.237 AACTGAAACG Rv2250c_nonpal_1 antisense_treY_785_to_stop 4 13 + 8.73913 0.000469 0.237 AACTGAAACG Rv2250c_nonpal_1 880_up_of_treZ 4 13 + 8.73913 0.000469 0.237 AACTGAAACG Rv2250c_nonpal_1 877_up_of_treZ 25 34 - 8.73913 0.000469 0.237 AACTGAAACG Rv2250c_nonpal_1 sense_treZ_467_to_stop 25 34 - 8.73913 0.000469 0.237 AACTGAAACG Rv3246c_pal_1 10_up_of_Rv1866 22 37 + 8.18293 0.00047 0.069 GCACCGATATGGTGAC Rv3246c_pal_1 10_up_of_Rv1866 22 37 - 8.18293 0.00047 0.069 GTCACCATATCGGTGC Rv2324_nonpal_1 10_up_of_Rv1866 19 37 + 8.14493 0.000471 0.169 GAGGCACCGATATGGTGAC Rv3488_pal_2 sense_fadE7_118_to_stop 9 16 + 2.69767 0.000471 0.146 GGATATCG Rv3488_pal_2 sense_fadE7_118_to_stop 9 16 - 2.69767 0.000471 0.146 CGATATCC Rv3488_pal_2 antisense_fadE7_121_to_stop 22 29 + 2.69767 0.000471 0.146 CGATATCC Rv3488_pal_2 antisense_fadE7_121_to_stop 22 29 - 2.69767 0.000471 0.146 GGATATCG Rv2788_pal_2 antisense_frdA_787_from_start 13 33 + 4.46875 0.000471 0.177 AATCCTGGAGGTAGCGGTAGC Rv2788_pal_2 antisense_frdA_787_from_start 13 33 - 4.46875 0.000471 0.177 GCTACCGCTACCTCCAGGATT Rv0653c_nonpal_1 antisense_PPE24_1570_to_stop 20 38 + 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0653c_nonpal_1 antisense_PPE24_1345_to_stop 20 38 + 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0653c_nonpal_1 antisense_PPE24_1270_to_stop 20 38 + 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0653c_nonpal_1 sense_PPE24_1277_to_stop 10 28 - 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0653c_nonpal_1 sense_PPE24_1352_to_stop 10 28 - 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0653c_nonpal_1 sense_PPE24_1577_to_stop 10 28 - 6.29114 0.000471 0.113 ATTGTGATACCCGCGGGTA Rv0678_nonpal_1 antisense_gca_467_from_start 10 24 + 8.15625 0.000473 0.112 TAAGACTTGTGATAT Rv0678_nonpal_1 sense_gca_460_from_start 24 38 - 8.15625 0.000473 0.112 TAAGACTTGTGATAT Rv3830c_nonpal_2 93_up_of_lpqG 3 29 - -11.7692 0.000479 0.412 TACTGGCATCGACGGGCCCTACAATGC Rv3736_nonpal_1 sense_Rv1461_475_from_start 4 18 - 7.94203 0.000479 0.626 CAGATCCTCTCTGAT Rv3736_nonpal_1 antisense_Rv1461_472_from_start 20 34 + 7.94203 0.000479 0.626 CAGATCCTCTCTGAT Rv0275c_nonpal_1 sense_pks6_424_from_start 2 27 + -4.01923 0.000484 0.092 AGTGTGCGATAACAGCGTATCCAGAT Rv0275c_nonpal_1 sense_pks6_423_from_start 2 27 + -4.01923 0.000484 0.092 AGTGTGCGATAACAGCGTATCCAGAT Rv0767c_nonpal_1 10_up_of_Rv1866 1 15 - 7.98571 0.000485 0.445 CAGAACAGCCGTCGG Rv1473A_pal_1 antisense_aldA_642_from_start 24 35 + 7.25714 0.000486 0.313 TGACGATGTTGA Rv1473A_pal_1 antisense_aldA_642_from_start 24 35 - 7.25714 0.000486 0.313 TCAACATCGTCA Rv3765c_nonpal_1 antisense_aldA_642_from_start 15 34 - 0.242105 0.000488 0.375 CAACATCGTCACCTCCAGCA Rv1473A_pal_2 sense_Rv1461_475_from_start 1 8 + 9.12329 0.000488 0.0597 CAGATCAG Rv1473A_pal_2 sense_Rv1461_475_from_start 1 8 - 9.12329 0.000488 0.0597 CTGATCTG Rv1473A_pal_2 antisense_Rv1461_472_from_start 30 37 + 9.12329 0.000488 0.0597 CTGATCTG Rv1473A_pal_2 antisense_Rv1461_472_from_start 30 37 - 9.12329 0.000488 0.0597 CAGATCAG Rv0023_nonpal_1 sense_mmpL4_1184_to_stop 19 39 - 7.71831 0.000491 0.0967 AATAGCTTCGAATTGGTCTCC Rv3249c_pal_1 antisense_pyrC_541_to_stop 18 29 + 8.24615 0.000492 0.201 GTGATCGAAATA Rv3249c_pal_1 sense_pyrC_548_to_stop 19 30 + 8.24615 0.000492 0.201 TATTTCGATCAC Rv3249c_pal_1 antisense_pyrC_541_to_stop 18 29 - 8.24615 0.000492 0.201 TATTTCGATCAC Rv3249c_pal_1 sense_pyrC_548_to_stop 19 30 - 8.24615 0.000492 0.201 GTGATCGAAATA Rv0023_nonpal_1 9761_down_of_Rv3190c 1 21 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 43_up_of_Rv3179 1 21 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 5189_up_of_Rv3186 1 21 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 6724_up_of_Rv3188 1 21 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 1682_down_of_Rv3180c 1 21 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 6730_up_of_Rv3188 7 27 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 1688_down_of_Rv3180c 7 27 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 5195_up_of_Rv3186 7 27 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 9767_down_of_Rv3190c 7 27 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv0023_nonpal_1 49_up_of_Rv3179 7 27 + 7.70423 0.000495 0.0967 GTCGGTTATAAGTACACCGAT Rv2324_nonpal_2 antisense_aldA_642_from_start 15 29 - 7.48193 0.000499 0.299 TCGTCACCTCCAGCA Rv0273c_nonpal_1 antisense_mmpL4_1187_to_stop 4 28 + 7.0875 0.000502 0.198 CTTCGAATTGGTCTCCAGAAATCAT Rv0273c_nonpal_1 sense_mmpL4_1184_to_stop 10 34 - 7.0875 0.000502 0.198 CTTCGAATTGGTCTCCAGAAATCAT Rv0494_nonpal_2 antisense_Rv2963_530_to_stop 4 18 - 1.72632 0.000503 1 TTCTGGCAGAGCTTC Rv0981_nonpal_1 3353_up_of_Rv3179 2 29 - -7.12264 0.000505 0.136 TACACCAATCGGTTTACTGTAGGAGGTC Rv0981_nonpal_1 4992_down_of_Rv3180c 2 29 - -7.12264 0.000505 0.136 TACACCAATCGGTTTACTGTAGGAGGTC Rv0981_nonpal_1 8499_up_of_Rv3186 2 29 - -7.12264 0.000505 0.136 TACACCAATCGGTTTACTGTAGGAGGTC Rv0981_nonpal_1 10034_up_of_Rv3188 2 29 - -7.12264 0.000505 0.136 TACACCAATCGGTTTACTGTAGGAGGTC Rv0981_nonpal_1 13071_down_of_Rv3190c 2 29 - -7.12264 0.000505 0.136 TACACCAATCGGTTTACTGTAGGAGGTC Rv1816_nonpal_1 sense_Rv0674_10_to_stop 23 39 + 7.8 0.000506 0.146 TGACATGAGTGATCTGG Rv0273c_nonpal_1 sense_PPE24_1577_to_stop 1 25 + 7.0625 0.000508 0.198 AGCTGACGATACCCGCGGGTATCAC Rv0273c_nonpal_1 sense_PPE24_1352_to_stop 1 25 + 7.0625 0.000508 0.198 AGCTGACGATACCCGCGGGTATCAC Rv0273c_nonpal_1 sense_PPE24_1277_to_stop 1 25 + 7.0625 0.000508 0.198 AGCTGACGATACCCGCGGGTATCAC Rv2250c_nonpal_2 antisense_Rv0370c_389_from_start 5 32 - -39.9573 0.000511 0.311 CGGACCGACCCCTCCAGTGCTGCTCATC Rv0981_nonpal_2 sense_mmpL4_1184_to_stop 3 23 + 3.83158 0.000511 0.232 GATTTTGATGATTTCTGGAGA Rv0981_nonpal_2 antisense_mmpL4_1187_to_stop 15 35 - 3.83158 0.000511 0.232 GATTTTGATGATTTCTGGAGA Rv2324_nonpal_1 6717_up_of_Rv3188 5 23 - 8.01449 0.000511 0.169 TATACAAGGAGTCGGCGTG Rv2324_nonpal_1 5182_up_of_Rv3186 5 23 - 8.01449 0.000511 0.169 TATACAAGGAGTCGGCGTG Rv2324_nonpal_1 1675_down_of_Rv3180c 5 23 - 8.01449 0.000511 0.169 TATACAAGGAGTCGGCGTG Rv2324_nonpal_1 36_up_of_Rv3179 5 23 - 8.01449 0.000511 0.169 TATACAAGGAGTCGGCGTG Rv2324_nonpal_1 9754_down_of_Rv3190c 5 23 - 8.01449 0.000511 0.169 TATACAAGGAGTCGGCGTG Rv2034_nonpal_1 sense_rocA_797_to_stop 14 24 + 8.47059 0.000514 0.253 GTGGGTACCAA Rv2034_nonpal_1 antisense_rocA_790_to_stop 24 34 - 8.47059 0.000514 0.253 GTGGGTACCAA Rv0678_nonpal_1 93_up_of_lpqG 24 38 + 8.01562 0.000517 0.112 CCAGTACCCCGAAAT Rv0023_nonpal_2 antisense_aldA_642_from_start 13 40 - -25.4808 0.000517 0.135 CGTTGTCAACATCGTCACCTCCAGCAGT Rv1719_pal_1 antisense_pks6_431_from_start 14 28 + 8.25 0.00052 0.307 ACCCACGATCTGGAT Rv1719_pal_1 antisense_pks6_430_from_start 14 28 + 8.25 0.00052 0.307 ACCCACGATCTGGAT Rv1719_pal_1 sense_pks6_424_from_start 20 34 + 8.25 0.00052 0.307 ATCCAGATCGTGGGT Rv1719_pal_1 sense_pks6_423_from_start 20 34 + 8.25 0.00052 0.307 ATCCAGATCGTGGGT Rv1719_pal_1 antisense_pks6_431_from_start 14 28 - 8.25 0.00052 0.307 ATCCAGATCGTGGGT Rv1719_pal_1 antisense_pks6_430_from_start 14 28 - 8.25 0.00052 0.307 ATCCAGATCGTGGGT Rv1719_pal_1 sense_pks6_424_from_start 20 34 - 8.25 0.00052 0.307 ACCCACGATCTGGAT Rv1719_pal_1 sense_pks6_423_from_start 20 34 - 8.25 0.00052 0.307 ACCCACGATCTGGAT Rv1353c_pal_1 antisense_gca_467_from_start 3 13 + 8.12121 0.000521 0.171 CATGCCGTAAG Rv1353c_pal_1 antisense_gca_467_from_start 3 13 - 8.12121 0.000521 0.171 CTTACGGCATG Rv0678_nonpal_1 sense_treZ_467_to_stop 26 40 - 8 0.000523 0.112 CAAAAGAACTGAAAC Rv0678_nonpal_1 877_up_of_treZ 26 40 - 8 0.000523 0.112 CAAAAGAACTGAAAC Rv1473A_pal_1 sense_metA_384_from_start 18 29 + 7.1 0.000523 0.313 TGATCTCGATAC Rv1473A_pal_1 antisense_metA_391_from_start 19 30 + 7.1 0.000523 0.313 GTATCGAGATCA Rv1473A_pal_1 sense_metA_384_from_start 18 29 - 7.1 0.000523 0.313 GTATCGAGATCA Rv1473A_pal_1 antisense_metA_391_from_start 19 30 - 7.1 0.000523 0.313 TGATCTCGATAC Rv1404_nonpal_1 6724_up_of_Rv3188 13 38 - 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 5189_up_of_Rv3186 13 38 - 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 9761_down_of_Rv3190c 13 38 - 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 1682_down_of_Rv3180c 13 38 - 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 43_up_of_Rv3179 13 38 - 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 5188_up_of_Rv3186 4 29 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 42_up_of_Rv3179 4 29 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 1681_down_of_Rv3180c 4 29 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 6723_up_of_Rv3188 4 29 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 9760_down_of_Rv3190c 4 29 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 36_up_of_Rv3179 10 35 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 9754_down_of_Rv3190c 10 35 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 5182_up_of_Rv3186 10 35 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 1675_down_of_Rv3180c 10 35 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1404_nonpal_1 6717_up_of_Rv3188 10 35 + 6.0625 0.000525 0.0347 CGACTCCTTGTATACTGATCGGTGTA Rv1846c_pal_1 sense_gca_460_from_start 5 19 + 4.75789 0.000527 0.239 CCGACATGCTGGCGT Rv1846c_pal_1 sense_gca_460_from_start 5 19 - 4.75789 0.000527 0.239 ACGCCAGCATGTCGG Rv1473A_pal_2 sense_metA_384_from_start 17 24 + 9.06849 0.000528 0.0597 CTGATCTC Rv1473A_pal_2 sense_metA_384_from_start 17 24 - 9.06849 0.000528 0.0597 GAGATCAG Rv1473A_pal_2 antisense_metA_391_from_start 24 31 + 9.06849 0.000528 0.0597 GAGATCAG Rv1473A_pal_2 sense_Rv0674_10_to_stop 31 38 + 9.06849 0.000528 0.0597 GTGATCTG Rv1473A_pal_2 antisense_metA_391_from_start 24 31 - 9.06849 0.000528 0.0597 CTGATCTC Rv1473A_pal_2 sense_Rv0674_10_to_stop 31 38 - 9.06849 0.000528 0.0597 CAGATCAC Rv1816_nonpal_2 880_up_of_treZ 6 33 - -30.0096 0.000529 0.258 AGAGTGGGGGGCCTCCAGCCCGTTTCAG Rv1816_nonpal_2 antisense_treZ_470_to_stop 6 33 - -30.0096 0.000529 0.258 AGAGTGGGGGGCCTCCAGCCCGTTTCAG Rv1816_nonpal_2 antisense_treY_785_to_stop 6 33 - -30.0096 0.000529 0.258 AGAGTGGGGGGCCTCCAGCCCGTTTCAG Rv1816_nonpal_2 877_up_of_treZ 5 32 + -30.0096 0.000529 0.258 AGAGTGGGGGGCCTCCAGCCCGTTTCAG Rv1816_nonpal_2 sense_treZ_467_to_stop 5 32 + -30.0096 0.000529 0.258 AGAGTGGGGGGCCTCCAGCCCGTTTCAG Rv3557c_nonpal_1 antisense_PPE24_1270_to_stop 7 26 + -6.27885 0.000533 0.135 ACTAAAGCCACCGATTGTGA Rv3557c_nonpal_1 antisense_PPE24_1570_to_stop 7 26 + -6.27885 0.000533 0.135 ACTAAAGCCACCGATTGTGA Rv3557c_nonpal_1 antisense_PPE24_1345_to_stop 7 26 + -6.27885 0.000533 0.135 ACTAAAGCCACCGATTGTGA Rv1049_nonpal_2 sense_Rv1278_1158_to_stop 19 33 - 7.45333 0.000537 0.1 GGTCAGCGACCTCTC Rv0302_pal_1 antisense_pks6_430_from_start 12 23 + 7.96324 0.000541 0.249 GAACCCACGATC Rv0302_pal_1 antisense_pks6_431_from_start 12 23 + 7.96324 0.000541 0.249 GAACCCACGATC Rv0302_pal_1 antisense_pks6_431_from_start 12 23 - 7.96324 0.000541 0.249 GATCGTGGGTTC Rv0302_pal_1 antisense_pks6_430_from_start 12 23 - 7.96324 0.000541 0.249 GATCGTGGGTTC Rv0302_pal_1 sense_pks6_423_from_start 25 36 + 7.96324 0.000541 0.249 GATCGTGGGTTC Rv0302_pal_1 sense_pks6_424_from_start 25 36 + 7.96324 0.000541 0.249 GATCGTGGGTTC Rv0302_pal_1 sense_pks6_424_from_start 25 36 - 7.96324 0.000541 0.249 GAACCCACGATC Rv0302_pal_1 sense_pks6_423_from_start 25 36 - 7.96324 0.000541 0.249 GAACCCACGATC Rv3736_pal_1 antisense_pyrC_541_to_stop 7 21 + 7.82143 0.000542 0.419 TGACCTCGGCGGTGA Rv3736_pal_1 antisense_pyrC_541_to_stop 7 21 - 7.82143 0.000542 0.419 TCACCGCCGAGGTCA Rv2642_nonpal_1 sense_accA1_598_from_start 5 29 + 3.05814 0.000545 0.132 GATACGCTATTCCTGGAGCGGTTTG Rv2642_nonpal_1 antisense_accA1_595_from_start 9 33 - 3.05814 0.000545 0.132 GATACGCTATTCCTGGAGCGGTTTG Rv0981_nonpal_2 antisense_aldA_642_from_start 19 39 + 3.63158 0.000546 0.232 GGAGGTGACGATGTTGACAAC Rv0653c_nonpal_1 sense_gca_460_from_start 18 36 + 5.91139 0.000548 0.113 GTATCAATATCACAAGTCT Rv0653c_nonpal_1 antisense_gca_467_from_start 12 30 - 5.91139 0.000548 0.113 GTATCAATATCACAAGTCT Rv2359_nonpal_1 antisense_aldA_642_from_start 12 39 - -11.7885 0.000548 0.089 GTTGTCAACATCGTCACCTCCAGCAGTC Rv0494_nonpal_2 sense_cobK_304_from_start 2 16 - 1.36842 0.00055 1 CGGCGGGCGAGCCAG Rv3488_nonpal_1 sense_PPE24_1577_to_stop 1 14 + 4.44118 0.000551 0.126 AGCTGACGATACCC Rv3488_nonpal_1 sense_PPE24_1352_to_stop 1 14 + 4.44118 0.000551 0.126 AGCTGACGATACCC Rv3488_nonpal_1 sense_PPE24_1277_to_stop 1 14 + 4.44118 0.000551 0.126 AGCTGACGATACCC Rv3249c_pal_2 9760_down_of_Rv3190c 2 16 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 42_up_of_Rv3179 2 16 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 5188_up_of_Rv3186 2 16 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 6723_up_of_Rv3188 2 16 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 1681_down_of_Rv3180c 2 16 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 5182_up_of_Rv3186 8 22 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 36_up_of_Rv3179 8 22 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 1675_down_of_Rv3180c 8 22 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 6717_up_of_Rv3188 8 22 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 9754_down_of_Rv3190c 8 22 + 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 42_up_of_Rv3179 2 16 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 5188_up_of_Rv3186 2 16 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 9760_down_of_Rv3190c 2 16 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 6723_up_of_Rv3188 2 16 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 1681_down_of_Rv3180c 2 16 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 9754_down_of_Rv3190c 8 22 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 6717_up_of_Rv3188 8 22 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 1675_down_of_Rv3180c 8 22 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 5182_up_of_Rv3186 8 22 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 36_up_of_Rv3179 8 22 - 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 6724_up_of_Rv3188 26 40 + 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 5189_up_of_Rv3186 26 40 + 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 1682_down_of_Rv3180c 26 40 + 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 9761_down_of_Rv3190c 26 40 + 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 43_up_of_Rv3179 26 40 + 7.10811 0.000553 0.0767 ATACAAGGAGTCGGC Rv3249c_pal_2 6724_up_of_Rv3188 26 40 - 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 5189_up_of_Rv3186 26 40 - 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 9761_down_of_Rv3190c 26 40 - 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 1682_down_of_Rv3180c 26 40 - 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv3249c_pal_2 43_up_of_Rv3179 26 40 - 7.10811 0.000553 0.0767 GCCGACTCCTTGTAT Rv1473A_nonpal_1 antisense_pks6_431_from_start 16 29 + 2.80822 0.000554 0.192 CCACGATCTGGATA Rv1473A_nonpal_1 antisense_pks6_430_from_start 16 29 + 2.80822 0.000554 0.192 CCACGATCTGGATA Rv1473A_nonpal_1 sense_pks6_424_from_start 19 32 - 2.80822 0.000554 0.192 CCACGATCTGGATA Rv1473A_nonpal_1 sense_pks6_423_from_start 19 32 - 2.80822 0.000554 0.192 CCACGATCTGGATA Rv0117_nonpal_1 antisense_Rv2963_530_to_stop 1 27 - -6.42308 0.000557 0.101 CCCGAATCGTTCTGGCAGAGCTTCTTT Rv3849_nonpal_1 antisense_fadE7_121_to_stop 27 38 + 7.53425 0.000559 0.549 TCCCGTTGCCGC Rv0678_pal_1 sense_Rv1278_1158_to_stop 25 31 + 10.2647 0.000563 0.358 TCGCTGA Rv0678_pal_1 sense_Rv1278_1158_to_stop 25 31 - 10.2647 0.000563 0.358 TCAGCGA Rv0678_pal_1 sense_bioB_253_to_stop 32 38 + 10.2647 0.000563 0.358 TCGGTGA Rv0678_pal_1 sense_bioB_253_to_stop 32 38 - 10.2647 0.000563 0.358 TCACCGA Rv2989_pal_1 sense_Rv2038c_183_from_start 14 30 + 7.38961 0.000565 0.596 TGGGCGTATCCGGATCG Rv2989_pal_1 sense_Rv2038c_183_from_start 14 30 - 7.38961 0.000565 0.596 CGATCCGGATACGCCCA Rv3574_nonpal_1 sense_fadE7_118_to_stop 1 15 - 6.72059 0.000568 0.255 GATATCCCGTTGCCG Rv3574_nonpal_1 antisense_fadE7_121_to_stop 23 37 + 6.72059 0.000568 0.255 GATATCCCGTTGCCG Rv0117_nonpal_1 antisense_accA1_595_from_start 2 28 + -6.5 0.000568 0.101 CGCAACACAAACCGCTCCAGGAATAGC Rv0117_nonpal_1 sense_accA1_598_from_start 10 36 - -6.5 0.000568 0.101 CGCAACACAAACCGCTCCAGGAATAGC Rv0691c_pal_1 sense_gca_460_from_start 17 28 + 8.26087 0.000568 0.0721 CGTATCAATATC Rv0691c_pal_1 antisense_gca_467_from_start 20 31 + 8.26087 0.000568 0.0721 GATATTGATACG Rv0691c_pal_1 sense_gca_460_from_start 17 28 - 8.26087 0.000568 0.0721 GATATTGATACG Rv0691c_pal_1 antisense_gca_467_from_start 20 31 - 8.26087 0.000568 0.0721 CGTATCAATATC Rv0576_nonpal_1 8506_up_of_Rv3186 1 26 + 6.01136 0.00057 0.0897 TACCGTCAAAGCACAAAGTACACCAA Rv0576_nonpal_1 4999_down_of_Rv3180c 1 26 + 6.01136 0.00057 0.0897 TACCGTCAAAGCACAAAGTACACCAA Rv0576_nonpal_1 13078_down_of_Rv3190c 1 26 + 6.01136 0.00057 0.0897 TACCGTCAAAGCACAAAGTACACCAA Rv0576_nonpal_1 10041_up_of_Rv3188 1 26 + 6.01136 0.00057 0.0897 TACCGTCAAAGCACAAAGTACACCAA Rv0576_nonpal_1 3360_up_of_Rv3179 1 26 + 6.01136 0.00057 0.0897 TACCGTCAAAGCACAAAGTACACCAA Rv0047c_pal_1 sense_Rv1461_552_from_start 7 18 + 7.81818 0.000571 0.345 GGAATATTTCGG Rv0047c_pal_1 sense_Rv1461_552_from_start 7 18 - 7.81818 0.000571 0.345 CCGAAATATTCC Rv1956_pal_1 sense_Rv1461_552_from_start 8 15 + 6.75581 0.000571 0.168 GAATATTT Rv1956_pal_1 sense_Rv1461_552_from_start 8 15 - 6.75581 0.000571 0.168 AAATATTC Rv1956_pal_1 antisense_Rv1461_559_from_start 33 40 + 6.75581 0.000571 0.168 AAATATTC Rv1956_pal_1 antisense_Rv1461_559_from_start 33 40 - 6.75581 0.000571 0.168 GAATATTT Rv2788_nonpal_2 antisense_aldA_642_from_start 10 37 - -11.7326 0.000576 0.149 TGTCAACATCGTCACCTCCAGCAGTCAC Rv2989_nonpal_1 sense_gca_460_from_start 9 29 - 6.26316 0.000577 0.613 TGATATTGATACGCCAGCATG Rv2989_nonpal_1 antisense_gca_467_from_start 19 39 + 6.26316 0.000577 0.613 TGATATTGATACGCCAGCATG Rv1167c_nonpal_1 sense_metA_384_from_start 6 20 - 2.47115 0.000578 0.56 TCAGCGGAAATCTTG Rv1033c_nonpal_1 sense_pks9_325_to_stop 22 36 - 5 0.000578 0.226 CAAACCGATAGCCAT Rv3246c_nonpal_1 antisense_gca_467_from_start 6 25 + 6.23457 0.000578 0.128 GCCGTAAGACTTGTGATATT Rv0880_nonpal_1 antisense_Rv1461_416_from_start 12 35 - 0.0736842 0.000579 0.172 CAGAGATTAGTAGCTGGAGTAGCC Rv0047c_nonpal_1 sense_Rv2963_537_to_stop 1 15 + 7.9375 0.00058 0.275 GTGCTATCGCGGCAT Rv0757_nonpal_1 antisense_mmpL4_1187_to_stop 3 23 + 6.36709 0.000581 0.471 GCTTCGAATTGGTCTCCAGAA Rv0757_nonpal_1 sense_mmpL4_1184_to_stop 15 35 - 6.36709 0.000581 0.471 GCTTCGAATTGGTCTCCAGAA Rv0117_nonpal_1 sense_gca_460_from_start 3 29 - -6.59615 0.000582 0.101 TGATATTGATACGCCAGCATGTCGGTG Rv3133c_nonpal_1 13078_down_of_Rv3190c 9 23 - 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 3360_up_of_Rv3179 9 23 - 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 10041_up_of_Rv3188 9 23 - 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 4999_down_of_Rv3180c 9 23 - 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 8506_up_of_Rv3186 9 23 - 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 8499_up_of_Rv3186 25 39 + 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 3353_up_of_Rv3179 25 39 + 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 4992_down_of_Rv3180c 25 39 + 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 10034_up_of_Rv3188 25 39 + 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv3133c_nonpal_1 13071_down_of_Rv3190c 25 39 + 7.82609 0.000584 0.169 GTGTACTTTGTGCTT Rv1353c_pal_1 antisense_frdA_787_from_start 23 33 + 8.0303 0.000585 0.171 GTAGCGGTAGC Rv1353c_pal_1 antisense_frdA_787_from_start 23 33 - 8.0303 0.000585 0.171 GCTACCGCTAC Rv2009_pal_1 sense_rocA_797_to_stop 1 29 + 5.45255 0.000589 0.142 CCTATGGCAGTGGGTGGGTACCAATATCG Rv2009_pal_1 sense_rocA_797_to_stop 1 29 - 5.45255 0.000589 0.142 CGATATTGGTACCCACCCACTGCCATAGG Rv0757_nonpal_1 sense_pks9_325_to_stop 14 34 + 6.32911 0.00059 0.471 GTCTCCAGATGGCTATCGGTT Rv2374c_nonpal_1 8506_up_of_Rv3186 7 34 + -2.66346 0.000592 0.175 CAAAGCACAAAGTACACCAATCGGTTTA Rv2374c_nonpal_1 3360_up_of_Rv3179 7 34 + -2.66346 0.000592 0.175 CAAAGCACAAAGTACACCAATCGGTTTA Rv2374c_nonpal_1 10041_up_of_Rv3188 7 34 + -2.66346 0.000592 0.175 CAAAGCACAAAGTACACCAATCGGTTTA Rv2374c_nonpal_1 13078_down_of_Rv3190c 7 34 + -2.66346 0.000592 0.175 CAAAGCACAAAGTACACCAATCGGTTTA Rv2374c_nonpal_1 4999_down_of_Rv3180c 7 34 + -2.66346 0.000592 0.175 CAAAGCACAAAGTACACCAATCGGTTTA Rv1816_pal_1 sense_bioB_253_to_stop 5 17 + 7.86897 0.000596 0.0695 CGTTCGCCGACCT Rv1816_pal_1 sense_bioB_253_to_stop 5 17 - 7.86897 0.000596 0.0695 AGGTCGGCGAACG Rv1353c_nonpal_1 8506_up_of_Rv3186 18 32 + 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 4999_down_of_Rv3180c 18 32 + 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 3360_up_of_Rv3179 18 32 + 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 10041_up_of_Rv3188 18 32 + 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 13078_down_of_Rv3190c 18 32 + 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 3353_up_of_Rv3179 16 30 - 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 4992_down_of_Rv3180c 16 30 - 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 13071_down_of_Rv3190c 16 30 - 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 8499_up_of_Rv3186 16 30 - 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1353c_nonpal_1 10034_up_of_Rv3188 16 30 - 7.9697 0.000596 0.0894 GTACACCAATCGGTT Rv1990c_nonpal_1 sense_bioB_253_to_stop 30 40 - 8.04615 0.000599 0.676 CGTCACCGACC Rv2506_nonpal_1 sense_PPE24_1577_to_stop 8 26 + 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv2506_nonpal_1 sense_PPE24_1277_to_stop 8 26 + 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv2506_nonpal_1 sense_PPE24_1352_to_stop 8 26 + 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv2506_nonpal_1 antisense_PPE24_1570_to_stop 22 40 - 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv2506_nonpal_1 antisense_PPE24_1345_to_stop 22 40 - 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv2506_nonpal_1 antisense_PPE24_1270_to_stop 22 40 - 2.97872 0.000602 0.325 GATACCCGCGGGTATCACA Rv0158_nonpal_1 sense_Rv1461_475_from_start 12 36 + -3.51887 0.000602 0.146 GGATCTGGAGGCTCAAGGAGTCATA Rv0158_nonpal_1 antisense_Rv1461_472_from_start 2 26 - -3.51887 0.000602 0.146 GGATCTGGAGGCTCAAGGAGTCATA Rv3830c_nonpal_2 antisense_rocA_790_to_stop 1 27 + -12.8365 0.000604 0.412 GATAGCTATGGTAGCGGCCGATATTGG Rv1816_nonpal_1 sense_Rv2038c_183_from_start 23 39 + 7.46154 0.000608 0.146 CCGGATCGGCGAGCGCG Rv0047c_pal_1 antisense_gca_467_from_start 16 27 + 7.71212 0.000611 0.345 TTGTGATATTGA Rv0047c_pal_1 sense_gca_460_from_start 21 32 + 7.71212 0.000611 0.345 TCAATATCACAA Rv0047c_pal_1 antisense_gca_467_from_start 16 27 - 7.71212 0.000611 0.345 TCAATATCACAA Rv0047c_pal_1 sense_gca_460_from_start 21 32 - 7.71212 0.000611 0.345 TTGTGATATTGA Rv0302_nonpal_1 10_up_of_Rv1866 15 29 + 7.33333 0.000611 0.199 GCTGGAGGCACCGAT Rv1167c_nonpal_1 sense_fadE7_118_to_stop 14 28 + 2.26923 0.000613 0.56 TCGCTGGAGTACCCG Rv1167c_nonpal_1 antisense_fadE7_121_to_stop 10 24 - 2.26923 0.000613 0.56 TCGCTGGAGTACCCG Rv1828_nonpal_1 13071_down_of_Rv3190c 15 38 + -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 4992_down_of_Rv3180c 15 38 + -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 3353_up_of_Rv3179 15 38 + -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 10034_up_of_Rv3188 15 38 + -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 8499_up_of_Rv3186 15 38 + -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 13078_down_of_Rv3190c 10 33 - -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 10041_up_of_Rv3188 10 33 - -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 4999_down_of_Rv3180c 10 33 - -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 8506_up_of_Rv3186 10 33 - -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv1828_nonpal_1 3360_up_of_Rv3179 10 33 - -1.55319 0.000615 0.195 AAACCGATTGGTGTACTTTGTGCT Rv2034_nonpal_1 sense_pks9_325_to_stop 29 39 - 8.19118 0.000616 0.253 GGGCAAACCGA Rv1353c_nonpal_2 1681_down_of_Rv3180c 18 38 - -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 9760_down_of_Rv3190c 18 38 - -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 5188_up_of_Rv3186 18 38 - -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 42_up_of_Rv3179 18 38 - -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 6723_up_of_Rv3188 18 38 - -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 9761_down_of_Rv3190c 4 24 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 1682_down_of_Rv3180c 4 24 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 43_up_of_Rv3179 4 24 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 5189_up_of_Rv3186 4 24 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 6724_up_of_Rv3188 4 24 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 6730_up_of_Rv3188 10 30 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 1688_down_of_Rv3180c 10 30 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 9767_down_of_Rv3190c 10 30 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 5195_up_of_Rv3186 10 30 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv1353c_nonpal_2 49_up_of_Rv3179 10 30 + -28.6667 0.000617 0.136 GGTTATAAGTACACCGATCAG Rv0691c_pal_2 antisense_aldA_642_from_start 31 39 + 5.31646 0.000618 0.423 GTTGACAAC Rv0691c_pal_2 antisense_aldA_642_from_start 31 39 - 5.31646 0.000618 0.423 GTTGTCAAC Rv0818_nonpal_1 sense_rocA_797_to_stop 13 33 + 2.26596 0.000619 0.248 GGTGGGTACCAATATCGGCCG Rv0818_nonpal_1 antisense_rocA_790_to_stop 15 35 - 2.26596 0.000619 0.248 GGTGGGTACCAATATCGGCCG Rv0880_nonpal_1 antisense_Rv1461_559_from_start 16 39 + -0.189474 0.000623 0.172 CAGGGATTACTGTACCGAAATATT Rv0880_nonpal_1 sense_Rv1461_552_from_start 9 32 - -0.189474 0.000623 0.172 CAGGGATTACTGTACCGAAATATT Rv0158_nonpal_1 sense_accA1_598_from_start 6 30 + -3.65094 0.000623 0.146 ATACGCTATTCCTGGAGCGGTTTGT Rv0158_nonpal_1 antisense_accA1_595_from_start 8 32 - -3.65094 0.000623 0.146 ATACGCTATTCCTGGAGCGGTTTGT Rv2250c_pal_1 antisense_PPE34_1661_from_start 5 11 + 9.19118 0.000626 0.442 TGTCACG Rv2250c_pal_1 antisense_PPE34_1661_from_start 5 11 - 9.19118 0.000626 0.442 CGTGACA Rv2250c_pal_1 sense_PPE34_1439_from_start 27 33 + 9.19118 0.000626 0.442 CGTGACA Rv2250c_pal_1 sense_PPE34_1664_from_start 27 33 + 9.19118 0.000626 0.442 CGTGACA Rv2250c_pal_1 sense_PPE34_3066_to_stop 27 33 + 9.19118 0.000626 0.442 CGTGACA Rv2250c_pal_1 sense_PPE34_1664_from_start 27 33 - 9.19118 0.000626 0.442 TGTCACG Rv2250c_pal_1 sense_PPE34_1439_from_start 27 33 - 9.19118 0.000626 0.442 TGTCACG Rv2250c_pal_1 sense_PPE34_3066_to_stop 27 33 - 9.19118 0.000626 0.442 TGTCACG Rv1473A_pal_1 antisense_aldA_642_from_start 27 38 + 6.74286 0.000628 0.313 CGATGTTGACAA Rv1473A_pal_1 antisense_aldA_642_from_start 27 38 - 6.74286 0.000628 0.313 TTGTCAACATCG Rv0653c_nonpal_1 sense_bioB_253_to_stop 14 32 - 5.55696 0.000628 0.113 ACCGGCATTACCTCCAGGT Rv1956_pal_1 sense_Rv1461_552_from_start 10 17 + 6.56977 0.000629 0.168 ATATTTCG Rv1956_pal_1 sense_Rv1461_552_from_start 10 17 - 6.56977 0.000629 0.168 CGAAATAT Rv1956_pal_1 antisense_Rv1461_559_from_start 31 38 + 6.56977 0.000629 0.168 CGAAATAT Rv1956_pal_1 antisense_Rv1461_559_from_start 31 38 - 6.56977 0.000629 0.168 ATATTTCG Rv0135c_nonpal_2 antisense_Rv1461_559_from_start 4 31 + -14.0426 0.00063 0.464 TATTATCGCCGGCAGGGATTACTGTACC Rv1255c_nonpal_1 antisense_accA1_595_from_start 5 24 + 4.12644 0.000634 0.391 AACACAAACCGCTCCAGGAA Rv1255c_nonpal_1 sense_accA1_598_from_start 14 33 - 4.12644 0.000634 0.391 AACACAAACCGCTCCAGGAA Rv3849_pal_1 4_up_of_Rv1049 2 9 + 8.41558 0.000635 0.492 GTAGCTAC Rv3849_pal_1 4_up_of_Rv1049 2 9 - 8.41558 0.000635 0.492 GTAGCTAC Rv3849_pal_1 7_up_of_Rv1049 29 36 + 8.41558 0.000635 0.492 GTAGCTAC Rv3849_pal_1 7_up_of_Rv1049 29 36 - 8.41558 0.000635 0.492 GTAGCTAC Rv1473A_nonpal_1 sense_pyrC_548_to_stop 21 34 + 2.32877 0.000636 0.192 TTTCGATCACCGCC Rv1473A_nonpal_1 antisense_aldA_642_from_start 21 34 + 2.32877 0.000636 0.192 AGGTGACGATGTTG Rv1473A_nonpal_1 antisense_pyrC_541_to_stop 14 27 - 2.32877 0.000636 0.192 TTTCGATCACCGCC Rv1473A_pal_2 antisense_pks6_430_from_start 18 25 + 8.46575 0.000639 0.0597 ACGATCTG Rv1473A_pal_2 antisense_pks6_431_from_start 18 25 + 8.46575 0.000639 0.0597 ACGATCTG Rv1473A_pal_2 sense_pks6_423_from_start 23 30 + 8.46575 0.000639 0.0597 CAGATCGT Rv1473A_pal_2 sense_pks6_424_from_start 23 30 + 8.46575 0.000639 0.0597 CAGATCGT Rv1473A_pal_2 antisense_pks6_431_from_start 18 25 - 8.46575 0.000639 0.0597 CAGATCGT Rv1473A_pal_2 antisense_pks6_430_from_start 18 25 - 8.46575 0.000639 0.0597 CAGATCGT Rv1473A_pal_2 sense_pks6_423_from_start 23 30 - 8.46575 0.000639 0.0597 ACGATCTG Rv1473A_pal_2 sense_pks6_424_from_start 23 30 - 8.46575 0.000639 0.0597 ACGATCTG Rv0967_pal_1 antisense_pyrC_541_to_stop 5 11 + 9.92647 0.000641 0.368 GGTGACC Rv0967_pal_1 antisense_pyrC_541_to_stop 5 11 - 9.92647 0.000641 0.368 GGTCACC Rv0081_pal_1 sense_Rv1461_552_from_start 3 18 + 6.29333 0.000643 0.331 TCAAGGAATATTTCGG Rv0081_pal_1 sense_Rv1461_552_from_start 3 18 - 6.29333 0.000643 0.331 CCGAAATATTCCTTGA Rv3681c_nonpal_1 1662_up_of_Rv2018 19 38 + 5.20253 0.000643 0.179 CAGTGAAATTGATACAAGAT Rv2021c_nonpal_1 antisense_frdA_787_from_start 1 21 + 6.0241 0.000643 0.0813 TGCCGAGGTCGTAATCCTGGA Rv0818_pal_1 sense_gca_460_from_start 7 22 + 6.0625 0.000645 0.105 GACATGCTGGCGTATC Rv0818_pal_1 sense_gca_460_from_start 7 22 - 6.0625 0.000645 0.105 GATACGCCAGCATGTC Rv0653c_nonpal_1 10_up_of_Rv1866 19 37 - 5.48101 0.000647 0.113 GTCACCATATCGGTGCCTC Rv3066_nonpal_1 antisense_Rv2279_293_to_stop 14 33 + 5.44828 0.00065 0.848 ATGTGTACTGAGATCCCCTA Rv3066_nonpal_1 sense_Rv2279_300_to_stop 15 34 - 5.44828 0.00065 0.848 ATGTGTACTGAGATCCCCTA Rv0767c_pal_1 10_up_of_Rv1866 2 13 + 7.76238 0.000651 0.86 CGACGGCTGTTC Rv0767c_pal_1 10_up_of_Rv1866 2 13 - 7.76238 0.000651 0.86 GAACAGCCGTCG Rv1353c_pal_2 antisense_Rv2279_293_to_stop 3 29 + -27.1709 0.000652 0.385 GAACCGGATCGATGTGTACTGAGATCC Rv1353c_pal_2 antisense_Rv2279_293_to_stop 3 29 - -27.1709 0.000652 0.385 GGATCTCAGTACACATCGATCCGGTTC Rv3830c_nonpal_1 antisense_aldA_642_from_start 15 29 - 6.47297 0.000653 0.576 TCGTCACCTCCAGCA Rv2324_nonpal_2 antisense_mmpL4_1187_to_stop 25 39 + 6.83133 0.000654 0.299 TCATCAAAATCCGCG Rv1675c_nonpal_1 93_up_of_lpqG 17 37 + -3.81731 0.000656 1 GTCGATGCCAGTACCCCGAAA Rv0465c_nonpal_2 antisense_aldA_642_from_start 7 34 + -1.47126 0.000665 0.609 AGCGTGACTGCTGGAGGTGACGATGTTG Rv1816_pal_2 sense_metA_384_from_start 15 23 + 9.28767 0.000668 0.267 CGCTGATCT Rv1816_pal_2 sense_metA_384_from_start 15 23 - 9.28767 0.000668 0.267 AGATCAGCG Rv1816_pal_2 antisense_metA_391_from_start 25 33 + 9.28767 0.000668 0.267 AGATCAGCG Rv1816_pal_2 antisense_metA_391_from_start 25 33 - 9.28767 0.000668 0.267 CGCTGATCT Rv0023_nonpal_1 antisense_frdA_787_from_start 5 25 - 7.1831 0.00067 0.106 TACCTCCAGGATTACGACCTC Rv3849_nonpal_1 antisense_Rv1461_416_from_start 19 30 - 7.0137 0.000676 0.549 ATTAGTAGCTGG Rv3557c_pal_1 4992_down_of_Rv3180c 13 26 + 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 13071_down_of_Rv3190c 13 26 + 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 3353_up_of_Rv3179 13 26 + 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 8499_up_of_Rv3186 13 26 + 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 10034_up_of_Rv3188 13 26 + 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 3360_up_of_Rv3179 22 35 + 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 8506_up_of_Rv3186 22 35 + 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 10041_up_of_Rv3188 22 35 + 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 4999_down_of_Rv3180c 22 35 + 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 13078_down_of_Rv3190c 22 35 + 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 3353_up_of_Rv3179 13 26 - 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 13071_down_of_Rv3190c 13 26 - 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 4992_down_of_Rv3180c 13 26 - 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 8499_up_of_Rv3186 13 26 - 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 10034_up_of_Rv3188 13 26 - 0.0865385 0.000676 0.146 ACCAATCGGTTTAC Rv3557c_pal_1 8506_up_of_Rv3186 22 35 - 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 13078_down_of_Rv3190c 22 35 - 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 4999_down_of_Rv3180c 22 35 - 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 3360_up_of_Rv3179 22 35 - 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3557c_pal_1 10041_up_of_Rv3188 22 35 - 0.0865385 0.000676 0.146 GTAAACCGATTGGT Rv3849_nonpal_2 antisense_rocA_790_to_stop 3 30 + -6.4186 0.000678 0.514 TAGCTATGGTAGCGGCCGATATTGGTAC Rv0022c_nonpal_1 antisense_fadE7_121_to_stop 16 30 - 7.08219 0.000679 0.169 GGGATATCGCTGGAG Rv0022c_nonpal_1 sense_fadE7_118_to_stop 8 22 + 7.08219 0.000679 0.169 GGGATATCGCTGGAG Rv3765c_nonpal_1 sense_metA_384_from_start 19 38 + -0.957895 0.000682 0.375 GATCTCGATACGTGACCAGG Rv3765c_nonpal_1 antisense_metA_391_from_start 10 29 - -0.957895 0.000682 0.375 GATCTCGATACGTGACCAGG Rv0339c_nonpal_1 sense_Rv2279_300_to_stop 3 16 - 7.44828 0.000684 0.384 TATCCGTATGGTGG Rv0767c_nonpal_1 sense_mmpL4_1184_to_stop 17 31 + 7.37143 0.000684 0.445 CTGGAGACCAATTCG Rv0767c_nonpal_1 antisense_mmpL4_1187_to_stop 7 21 - 7.37143 0.000684 0.445 CTGGAGACCAATTCG Rv1033c_nonpal_1 sense_gca_460_from_start 17 31 + 4.43038 0.000686 0.227 CGTATCAATATCACA Rv1033c_nonpal_1 antisense_gca_467_from_start 17 31 - 4.43038 0.000686 0.227 CGTATCAATATCACA Rv0081_nonpal_1 8499_up_of_Rv3186 21 35 + 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 13071_down_of_Rv3190c 21 35 + 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 4992_down_of_Rv3180c 21 35 + 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 3353_up_of_Rv3179 21 35 + 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 10034_up_of_Rv3188 21 35 + 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 4999_down_of_Rv3180c 13 27 - 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 8506_up_of_Rv3186 13 27 - 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 10041_up_of_Rv3188 13 27 - 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 13078_down_of_Rv3190c 13 27 - 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv0081_nonpal_1 3360_up_of_Rv3179 13 27 - 5.41333 0.000686 0.218 ATTGGTGTACTTTGT Rv1404_nonpal_1 1682_down_of_Rv3180c 3 28 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 6724_up_of_Rv3188 3 28 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 43_up_of_Rv3179 3 28 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 9761_down_of_Rv3190c 3 28 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 5189_up_of_Rv3186 3 28 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 9767_down_of_Rv3190c 9 34 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 1688_down_of_Rv3180c 9 34 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 5195_up_of_Rv3186 9 34 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 6730_up_of_Rv3188 9 34 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 49_up_of_Rv3179 9 34 + 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 1681_down_of_Rv3180c 14 39 - 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 6723_up_of_Rv3188 14 39 - 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 9760_down_of_Rv3190c 14 39 - 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 5188_up_of_Rv3186 14 39 - 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv1404_nonpal_1 42_up_of_Rv3179 14 39 - 5.425 0.000687 0.0347 CGGTTATAAGTACACCGATCAGTATA Rv0117_nonpal_1 antisense_Rv1461_416_from_start 6 32 + -7.27885 0.000688 0.111 TTGTGCGGCTACTCCAGCTACTAATCT Rv1816_nonpal_2 antisense_cobK_311_from_start 7 34 + -31.4808 0.000691 0.281 CGATGATGGCGGTACCGGGATCCCACGG Rv0324_nonpal_1 9761_down_of_Rv3190c 15 22 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 1682_down_of_Rv3180c 15 22 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 6724_up_of_Rv3188 15 22 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 43_up_of_Rv3179 15 22 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 5189_up_of_Rv3186 15 22 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 9767_down_of_Rv3190c 21 28 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 1688_down_of_Rv3180c 21 28 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 49_up_of_Rv3179 21 28 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 6730_up_of_Rv3188 21 28 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 5195_up_of_Rv3186 21 28 + 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 5188_up_of_Rv3186 20 27 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 42_up_of_Rv3179 20 27 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 1681_down_of_Rv3180c 20 27 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 9760_down_of_Rv3190c 20 27 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 6723_up_of_Rv3188 20 27 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 5182_up_of_Rv3186 26 33 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 36_up_of_Rv3179 26 33 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 6717_up_of_Rv3188 26 33 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 9754_down_of_Rv3190c 26 33 - 8.91176 0.000691 0.0796 CACCGATC Rv0324_nonpal_1 1675_down_of_Rv3180c 26 33 - 8.91176 0.000691 0.0796 CACCGATC Rv0023_pal_2 sense_Rv1278_1158_to_stop 16 31 + 7.2987 0.000699 0.292 CTGGAGAGGTCGCTGA Rv0023_pal_2 sense_Rv1278_1158_to_stop 16 31 - 7.2987 0.000699 0.292 TCAGCGACCTCTCCAG Rv2887_nonpal_1 1662_up_of_Rv2018 18 32 + 4.775 0.000699 0.519 CCAGTGAAATTGATA Rv0678_nonpal_1 1662_up_of_Rv2018 22 36 + 7.53125 0.0007 0.112 TGAAATTGATACAAG Rv3557c_pal_1 antisense_frdA_787_from_start 21 34 + -0.0673077 0.000702 0.146 AGGTAGCGGTAGCC Rv3557c_pal_1 antisense_frdA_787_from_start 21 34 - -0.0673077 0.000702 0.146 GGCTACCGCTACCT Rv1404_nonpal_1 antisense_PPE24_1345_to_stop 4 29 - 5.375 0.000702 0.0347 GTATCACAATCGGTGGCTTTAGTCTA Rv1404_nonpal_1 antisense_PPE24_1570_to_stop 4 29 - 5.375 0.000702 0.0347 GTATCACAATCGGTGGCTTTAGTCTA Rv1404_nonpal_1 antisense_PPE24_1270_to_stop 4 29 - 5.375 0.000702 0.0347 GTATCACAATCGGTGGCTTTAGTCTA Rv2788_pal_1 antisense_mmpL4_1187_to_stop 6 27 + 3.84444 0.000702 0.115 TCGAATTGGTCTCCAGAAATCA Rv2788_pal_1 sense_mmpL4_1184_to_stop 11 32 + 3.84444 0.000702 0.115 TGATTTCTGGAGACCAATTCGA Rv2788_pal_1 antisense_mmpL4_1187_to_stop 6 27 - 3.84444 0.000702 0.115 TGATTTCTGGAGACCAATTCGA Rv2788_pal_1 sense_mmpL4_1184_to_stop 11 32 - 3.84444 0.000702 0.115 TCGAATTGGTCTCCAGAAATCA Rv0339c_nonpal_2 antisense_pyrC_541_to_stop 14 34 + -3.90385 0.000704 0.7 GGCGGTGATCGAAATACCCTG Rv0339c_nonpal_2 sense_pyrC_548_to_stop 14 34 - -3.90385 0.000704 0.7 GGCGGTGATCGAAATACCCTG Rv3676_nonpal_1 sense_pks9_325_to_stop 2 22 - -4.36538 0.000706 1 TCTGGAGACGATTGCGTAGTT Rv2788_nonpal_2 antisense_PPE24_1270_to_stop 12 39 + -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv2788_nonpal_2 antisense_PPE24_1345_to_stop 12 39 + -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv2788_nonpal_2 antisense_PPE24_1570_to_stop 12 39 + -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv2788_nonpal_2 sense_PPE24_1577_to_stop 9 36 - -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv2788_nonpal_2 sense_PPE24_1352_to_stop 9 36 - -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv2788_nonpal_2 sense_PPE24_1277_to_stop 9 36 - -12.7209 0.000708 0.149 AGCCACCGATTGTGATACCCGCGGGTAT Rv1359_nonpal_1 antisense_Rv2279_293_to_stop 3 30 - -5.13462 0.000709 0.133 GGGATCTCAGTACACATCGATCCGGTTC Rv1473A_pal_1 antisense_Rv1251c_1309_from_start 24 35 + 6.48571 0.000711 0.313 CCTTCAAGCTGA Rv1473A_pal_1 antisense_Rv1251c_1309_from_start 24 35 - 6.48571 0.000711 0.313 TCAGCTTGAAGG Rv2324_nonpal_2 antisense_Rv1461_559_from_start 10 24 - 6.60241 0.000716 0.299 TAATCCCTGCCGGCG Rv2324_nonpal_2 sense_Rv1461_552_from_start 24 38 + 6.60241 0.000716 0.299 TAATCCCTGCCGGCG Rv1473A_pal_2 43_up_of_Rv3179 17 24 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 9761_down_of_Rv3190c 17 24 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 5189_up_of_Rv3186 17 24 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 1682_down_of_Rv3180c 17 24 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 6724_up_of_Rv3188 17 24 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 1681_down_of_Rv3180c 18 25 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 42_up_of_Rv3179 18 25 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 6723_up_of_Rv3188 18 25 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 9760_down_of_Rv3190c 18 25 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 5188_up_of_Rv3186 18 25 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 1688_down_of_Rv3180c 23 30 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 9767_down_of_Rv3190c 23 30 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 5195_up_of_Rv3186 23 30 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 49_up_of_Rv3179 23 30 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 6730_up_of_Rv3188 23 30 + 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 6717_up_of_Rv3188 24 31 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 43_up_of_Rv3179 17 24 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 1675_down_of_Rv3180c 24 31 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 9761_down_of_Rv3190c 17 24 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 5182_up_of_Rv3186 24 31 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 1682_down_of_Rv3180c 17 24 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 5189_up_of_Rv3186 17 24 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 9754_down_of_Rv3190c 24 31 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 6724_up_of_Rv3188 17 24 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 36_up_of_Rv3179 24 31 + 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 5188_up_of_Rv3186 18 25 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 9760_down_of_Rv3190c 18 25 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 42_up_of_Rv3179 18 25 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 1681_down_of_Rv3180c 18 25 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 6723_up_of_Rv3188 18 25 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 5195_up_of_Rv3186 23 30 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 1688_down_of_Rv3180c 23 30 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 9767_down_of_Rv3190c 23 30 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 49_up_of_Rv3179 23 30 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 6730_up_of_Rv3188 23 30 - 8.39726 0.000717 0.0597 CTGATCGG Rv1473A_pal_2 6717_up_of_Rv3188 24 31 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 36_up_of_Rv3179 24 31 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 5182_up_of_Rv3186 24 31 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 9754_down_of_Rv3190c 24 31 - 8.39726 0.000717 0.0597 CCGATCAG Rv1473A_pal_2 1675_down_of_Rv3180c 24 31 - 8.39726 0.000717 0.0597 CCGATCAG Rv1816_pal_1 sense_Rv2038c_183_from_start 25 37 + 7.6 0.000717 0.0801 GGATCGGCGAGCG Rv1816_pal_1 sense_Rv2038c_183_from_start 25 37 - 7.6 0.000717 0.0801 CGCTCGCCGATCC Rv0602c_pal_1 antisense_Rv1461_559_from_start 2 9 + 6.73418 0.000718 0.135 CTTATTAT Rv0602c_pal_1 antisense_Rv1461_559_from_start 2 9 - 6.73418 0.000718 0.135 ATAATAAG Rv2250c_nonpal_1 antisense_aldA_642_from_start 31 40 - 8.01449 0.000726 0.274 CGTTGTCAAC Rv1816_pal_2 sense_Rv1278_1158_to_stop 26 34 + 9.16438 0.000726 0.267 CGCTGACCT Rv1816_pal_2 sense_Rv1278_1158_to_stop 26 34 - 9.16438 0.000726 0.267 AGGTCAGCG Rv3246c_pal_1 13071_down_of_Rv3190c 14 29 + 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 10034_up_of_Rv3188 14 29 + 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 4992_down_of_Rv3180c 14 29 + 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 3353_up_of_Rv3179 14 29 + 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 8499_up_of_Rv3186 14 29 + 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 13078_down_of_Rv3190c 19 34 + 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 3360_up_of_Rv3179 19 34 + 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 4999_down_of_Rv3180c 19 34 + 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 10041_up_of_Rv3188 19 34 + 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 8506_up_of_Rv3186 19 34 + 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 4992_down_of_Rv3180c 14 29 - 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 8499_up_of_Rv3186 14 29 - 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 3353_up_of_Rv3179 14 29 - 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 10034_up_of_Rv3188 14 29 - 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 13071_down_of_Rv3190c 14 29 - 7.42683 0.00073 0.069 TACACCAATCGGTTTA Rv3246c_pal_1 3360_up_of_Rv3179 19 34 - 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 4999_down_of_Rv3180c 19 34 - 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 10041_up_of_Rv3188 19 34 - 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 13078_down_of_Rv3190c 19 34 - 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3246c_pal_1 8506_up_of_Rv3186 19 34 - 7.42683 0.00073 0.069 TAAACCGATTGGTGTA Rv3574_nonpal_2 sense_pks9_325_to_stop 12 39 + -29.2564 0.00073 0.26 TCGTCTCCAGATGGCTATCGGTTTGCCC Rv3124_nonpal_1 sense_Rv1461_475_from_start 5 31 + -8.07692 0.000731 0.135 TCAGAGAGGATCTGGAGGCTCAAGGAG Rv3124_nonpal_1 antisense_Rv1461_472_from_start 7 33 - -8.07692 0.000731 0.135 TCAGAGAGGATCTGGAGGCTCAAGGAG Rv0767c_nonpal_2 sense_Rv1278_1158_to_stop 18 38 + 5.5443 0.000732 0.379 GGAGAGGTCGCTGACCTAGCC Rv0023_nonpal_1 sense_Rv1461_552_from_start 2 22 - 7 0.000744 0.106 TGTACCGAAATATTCCTTGAA Rv0023_nonpal_2 93_up_of_lpqG 10 37 + -27.4231 0.000745 0.152 AGGGCCCGTCGATGCCAGTACCCCGAAA Rv3557c_nonpal_1 sense_PE_PGRS57_112_from_start 12 31 - -7.73077 0.000745 0.166 CAGCCAGCACCTGCGTGGTC Rv3557c_nonpal_1 sense_PE_PGRS54_112_from_start 12 31 - -7.73077 0.000745 0.166 CAGCCAGCACCTGCGTGGTC Rv1473A_nonpal_2 5189_up_of_Rv3186 16 23 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 9761_down_of_Rv3190c 16 23 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 6724_up_of_Rv3188 16 23 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 43_up_of_Rv3179 16 23 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 1682_down_of_Rv3180c 16 23 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 9767_down_of_Rv3190c 22 29 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 5195_up_of_Rv3186 22 29 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 49_up_of_Rv3179 22 29 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 1688_down_of_Rv3180c 22 29 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 6730_up_of_Rv3188 22 29 + 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 5188_up_of_Rv3186 19 26 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 1681_down_of_Rv3180c 19 26 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 9760_down_of_Rv3190c 19 26 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 42_up_of_Rv3179 19 26 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 6723_up_of_Rv3188 19 26 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 36_up_of_Rv3179 25 32 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 6717_up_of_Rv3188 25 32 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 1675_down_of_Rv3180c 25 32 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 5182_up_of_Rv3186 25 32 - 2.68493 0.000748 0.0824 ACCGATCA Rv1473A_nonpal_2 9754_down_of_Rv3190c 25 32 - 2.68493 0.000748 0.0824 ACCGATCA Rv0767c_nonpal_2 antisense_aldA_642_from_start 16 36 + 5.48101 0.00075 0.379 GCTGGAGGTGACGATGTTGAC Rv0757_pal_1 1662_up_of_Rv2018 19 32 + 7.49367 0.00075 0.719 CAGTGAAATTGATA Rv0757_pal_1 1662_up_of_Rv2018 19 32 - 7.49367 0.00075 0.719 TATCAATTTCACTG Rv0135c_pal_1 sense_Rv2963_537_to_stop 15 24 + 8.5 0.000755 0.278 TGGGTACCCG Rv0135c_pal_1 antisense_Rv2963_530_to_stop 24 33 + 8.5 0.000755 0.278 CGGGTACCCA Rv0135c_pal_1 sense_Rv2963_537_to_stop 15 24 - 8.5 0.000755 0.278 CGGGTACCCA Rv0135c_pal_1 antisense_Rv2963_530_to_stop 24 33 - 8.5 0.000755 0.278 TGGGTACCCG Rv1473A_nonpal_1 antisense_pyrC_541_to_stop 4 17 + 1.67123 0.000762 0.216 GGGTGACCTCGGCG Rv2324_nonpal_2 antisense_PPE24_1270_to_stop 5 19 + 6.43373 0.000764 0.299 AGACTAAAGCCACCG Rv2324_nonpal_2 antisense_PPE24_1570_to_stop 5 19 + 6.43373 0.000764 0.299 AGACTAAAGCCACCG Rv2324_nonpal_2 antisense_PPE24_1345_to_stop 5 19 + 6.43373 0.000764 0.299 AGACTAAAGCCACCG Rv2887_pal_1 sense_Rv2279_300_to_stop 1 15 + 5.85 0.000767 0.337 ATCCACCATACGGAT Rv2887_pal_1 sense_Rv2279_300_to_stop 1 15 - 5.85 0.000767 0.337 ATCCGTATGGTGGAT Rv1719_nonpal_2 antisense_pyrC_541_to_stop 6 26 - 4.78824 0.000769 1 TTCGATCACCGCCGAGGTCAC Rv2788_nonpal_2 antisense_Rv1461_559_from_start 13 40 + -13.1395 0.000771 0.149 CGGCAGGGATTACTGTACCGAAATATTC Rv2788_nonpal_2 sense_Rv1461_552_from_start 8 35 - -13.1395 0.000771 0.149 CGGCAGGGATTACTGTACCGAAATATTC Rv1674c_nonpal_1 sense_Rv1461_552_from_start 5 22 + -0.87234 0.000778 0.357 AAGGAATATTTCGGTACA Rv0691c_nonpal_1 antisense_aldA_642_from_start 21 34 - 6.42188 0.00078 0.249 CAACATCGTCACCT Rv0081_nonpal_1 antisense_aldA_642_from_start 25 39 - 5.06667 0.000781 0.218 GTTGTCAACATCGTC Rv1816_nonpal_1 1681_down_of_Rv3180c 17 33 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 9760_down_of_Rv3190c 17 33 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 6723_up_of_Rv3188 17 33 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 42_up_of_Rv3179 17 33 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 5188_up_of_Rv3186 17 33 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 36_up_of_Rv3179 23 39 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 9754_down_of_Rv3190c 23 39 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 5182_up_of_Rv3186 23 39 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 6717_up_of_Rv3188 23 39 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 1675_down_of_Rv3180c 23 39 + 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 1682_down_of_Rv3180c 9 25 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 6724_up_of_Rv3188 9 25 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 5189_up_of_Rv3186 9 25 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 9761_down_of_Rv3190c 9 25 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 43_up_of_Rv3179 9 25 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 6730_up_of_Rv3188 15 31 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 5195_up_of_Rv3186 15 31 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 49_up_of_Rv3179 15 31 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 9767_down_of_Rv3190c 15 31 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv1816_nonpal_1 1688_down_of_Rv3180c 15 31 - 6.98462 0.000783 0.146 ACTGATCGGTGTACTTA Rv0302_nonpal_1 antisense_rocA_790_to_stop 8 22 + 6.86957 0.000783 0.199 ATGGTAGCGGCCGAT Rv0302_nonpal_1 sense_rocA_797_to_stop 26 40 - 6.86957 0.000783 0.199 ATGGTAGCGGCCGAT Rv0494_nonpal_1 37_up_of_Rv2172c 14 33 + 3.60494 0.000784 1 TGCTCCAGCGGTTGATTTGG Rv0494_nonpal_1 sense_mptA_23_from_start 14 33 + 3.60494 0.000784 1 TGCTCCAGCGGTTGATTTGG Rv3246c_nonpal_1 1662_up_of_Rv2018 15 34 + 5.50617 0.000785 0.159 TCTCCAGTGAAATTGATACA Rv2324_nonpal_2 antisense_Rv1461_559_from_start 3 17 + 6.36145 0.000786 0.299 TTATTATCGCCGGCA Rv2359_pal_1 antisense_mmpL4_1187_to_stop 3 23 + -6.81905 0.000787 0.143 GCTTCGAATTGGTCTCCAGAA Rv2359_pal_1 sense_mmpL4_1184_to_stop 15 35 + -6.81905 0.000787 0.143 TTCTGGAGACCAATTCGAAGC Rv2359_pal_1 antisense_mmpL4_1187_to_stop 3 23 - -6.81905 0.000787 0.143 TTCTGGAGACCAATTCGAAGC Rv2359_pal_1 sense_mmpL4_1184_to_stop 15 35 - -6.81905 0.000787 0.143 GCTTCGAATTGGTCTCCAGAA Rv0678_pal_1 sense_bioB_253_to_stop 8 14 + 10.1765 0.000789 0.358 TCGCCGA Rv0678_pal_1 sense_bioB_253_to_stop 8 14 - 10.1765 0.000789 0.358 TCGGCGA Rv0678_pal_1 sense_Rv2038c_183_from_start 28 34 + 10.1765 0.000789 0.358 TCGGCGA Rv0678_pal_1 sense_Rv2038c_183_from_start 28 34 - 10.1765 0.000789 0.358 TCGCCGA Rv1776c_nonpal_1 sense_PE_PGRS54_112_from_start 9 14 - 8.82192 0.000789 0.745 GTCGCA Rv1776c_nonpal_1 sense_PE_PGRS57_112_from_start 9 14 - 8.82192 0.000789 0.745 GTCGCA Rv1719_pal_1 sense_Rv2279_300_to_stop 1 15 + 7.5625 0.000789 0.373 ATCCACCATACGGAT Rv1719_pal_1 sense_Rv2279_300_to_stop 1 15 - 7.5625 0.000789 0.373 ATCCGTATGGTGGAT Rv0465c_nonpal_1 sense_Rv2279_300_to_stop 6 29 - -8.24138 0.000792 0.384 TACTGAGATCCCCTATCCGTATGG Rv0691c_pal_2 93_up_of_lpqG 20 28 + 1.64557 0.000793 0.423 GATGCCAGT Rv0691c_pal_2 93_up_of_lpqG 20 28 - 1.64557 0.000793 0.423 ACTGGCATC Rv0324_nonpal_1 sense_mmpL4_1184_to_stop 8 15 + 0.161765 0.000794 0.0881 TGATGATT Rv0324_nonpal_1 antisense_mmpL4_1187_to_stop 23 30 - 0.161765 0.000794 0.0881 TGATGATT Rv0653c_nonpal_1 sense_Rv1278_1158_to_stop 22 40 - 4.92405 0.000797 0.113 GCGGCTAGGTCAGCGACCT Rv2011c_nonpal_1 antisense_aldA_642_from_start 18 36 - 7.37143 0.0008 0.503 GTCAACATCGTCACCTCCA Rv3830c_nonpal_2 antisense_pyrC_541_to_stop 13 39 + -14.1731 0.000802 0.412 CGGCGGTGATCGAAATACCCTGGTCCT Rv3830c_nonpal_2 sense_pyrC_548_to_stop 9 35 - -14.1731 0.000802 0.412 CGGCGGTGATCGAAATACCCTGGTCCT Rv0324_pal_1 antisense_aldA_642_from_start 21 32 + 6.07407 0.000805 0.43 AGGTGACGATGT Rv0324_pal_1 antisense_aldA_642_from_start 21 32 - 6.07407 0.000805 0.43 ACATCGTCACCT Rv3249c_pal_1 antisense_metA_391_from_start 18 29 + 7.52308 0.000806 0.212 CGTATCGAGATC Rv3249c_pal_1 sense_metA_384_from_start 19 30 + 7.52308 0.000806 0.212 GATCTCGATACG Rv3249c_pal_1 antisense_metA_391_from_start 18 29 - 7.52308 0.000806 0.212 GATCTCGATACG Rv3249c_pal_1 sense_metA_384_from_start 19 30 - 7.52308 0.000806 0.212 CGTATCGAGATC Rv3124_nonpal_1 880_up_of_treZ 7 33 + -8.5 0.000808 0.135 TGAAACGGGCTGGAGGCCCCCCACTCT Rv3124_nonpal_1 antisense_treY_785_to_stop 7 33 + -8.5 0.000808 0.135 TGAAACGGGCTGGAGGCCCCCCACTCT Rv3124_nonpal_1 antisense_treZ_470_to_stop 7 33 + -8.5 0.000808 0.135 TGAAACGGGCTGGAGGCCCCCCACTCT Rv3124_nonpal_1 sense_treZ_467_to_stop 5 31 - -8.5 0.000808 0.135 TGAAACGGGCTGGAGGCCCCCCACTCT Rv3124_nonpal_1 877_up_of_treZ 5 31 - -8.5 0.000808 0.135 TGAAACGGGCTGGAGGCCCCCCACTCT Rv2324_nonpal_2 sense_bioB_253_to_stop 9 23 - 6.28916 0.000808 0.299 ACCTCCAGGTCGGCG Rv3133c_nonpal_1 antisense_gca_467_from_start 4 18 - 7.26087 0.00081 0.208 CAAGTCTTACGGCAT Rv0324_pal_1 antisense_aldA_642_from_start 24 35 + 6 0.00082 0.43 TGACGATGTTGA Rv0324_pal_1 antisense_aldA_642_from_start 24 35 - 6 0.00082 0.43 TCAACATCGTCA Rv3246c_nonpal_1 sense_pks9_325_to_stop 2 21 - 5.39506 0.000821 0.159 CTGGAGACGATTGCGTAGTT Rv1994c_nonpal_1 sense_metA_384_from_start 3 17 - 7.08219 0.000821 0.148 GCGGAAATCTTGAGC Rv2642_nonpal_1 antisense_pyrC_541_to_stop 4 28 - 1.80233 0.000821 0.132 ATTTCGATCACCGCCGAGGTCACCC Rv1255c_nonpal_1 4_up_of_Rv1049 4 23 + 3.24138 0.000822 0.391 AGCTACACGAGTCTGGAGTA Rv1255c_nonpal_1 7_up_of_Rv1049 15 34 - 3.24138 0.000822 0.391 AGCTACACGAGTCTGGAGTA Rv2359_nonpal_1 antisense_Rv0370c_389_from_start 3 30 + -13.6346 0.000824 0.114 TCGATGAGCAGCACTGGAGGGGTCGGTC Rv2034_pal_1 sense_rocA_797_to_stop 10 25 + 4.95 0.000827 0.501 GTGGGTGGGTACCAAT Rv2034_pal_1 antisense_rocA_790_to_stop 23 38 + 4.95 0.000827 0.501 ATTGGTACCCACCCAC Rv2034_pal_1 sense_rocA_797_to_stop 10 25 - 4.95 0.000827 0.501 ATTGGTACCCACCCAC Rv2034_pal_1 antisense_rocA_790_to_stop 23 38 - 4.95 0.000827 0.501 GTGGGTGGGTACCAAT Rv0022c_nonpal_1 antisense_mmpL4_1187_to_stop 23 37 - 6.64384 0.000827 0.169 CGGATTTTGATGATT Rv0022c_nonpal_1 sense_mmpL4_1184_to_stop 1 15 + 6.64384 0.000827 0.169 CGGATTTTGATGATT Rv0678_pal_2 sense_mmpL4_1184_to_stop 7 22 + 5.65333 0.000829 0.255 TTGATGATTTCTGGAG Rv0678_pal_2 antisense_mmpL4_1187_to_stop 16 31 + 5.65333 0.000829 0.255 CTCCAGAAATCATCAA Rv0678_pal_2 sense_mmpL4_1184_to_stop 7 22 - 5.65333 0.000829 0.255 CTCCAGAAATCATCAA Rv0678_pal_2 antisense_mmpL4_1187_to_stop 16 31 - 5.65333 0.000829 0.255 TTGATGATTTCTGGAG Rv1556_nonpal_1 93_up_of_lpqG 16 32 + 0.659574 0.000831 0.294 CGTCGATGCCAGTACCC Rv0135c_nonpal_2 antisense_frdA_787_from_start 6 33 + -15.383 0.000832 0.464 AGGTCGTAATCCTGGAGGTAGCGGTAGC Rv0081_nonpal_1 antisense_pks6_430_from_start 14 28 + 4.89333 0.000833 0.218 ACCCACGATCTGGAT Rv0081_nonpal_1 antisense_pks6_431_from_start 14 28 + 4.89333 0.000833 0.218 ACCCACGATCTGGAT Rv0081_nonpal_1 sense_pks6_424_from_start 20 34 - 4.89333 0.000833 0.218 ACCCACGATCTGGAT Rv0081_nonpal_1 sense_pks6_423_from_start 20 34 - 4.89333 0.000833 0.218 ACCCACGATCTGGAT Rv2021c_nonpal_1 sense_Rv0674_10_to_stop 20 40 + 5.37349 0.000834 0.102 AGGTGACATGAGTGATCTGGT Rv0275c_nonpal_1 sense_Rv1461_475_from_start 14 39 - -6.17308 0.000834 0.135 AAATATGACTCCTTGAGCCTCCAGAT Rv2009_nonpal_1 sense_rocA_797_to_stop 8 28 + 4.34177 0.000845 0.279 CAGTGGGTGGGTACCAATATC Rv2009_nonpal_1 antisense_rocA_790_to_stop 20 40 - 4.34177 0.000845 0.279 CAGTGGGTGGGTACCAATATC Rv3249c_nonpal_2 93_up_of_lpqG 8 22 + 6.85333 0.000845 0.542 GTAGGGCCCGTCGAT Rv0135c_nonpal_1 sense_Rv1461_552_from_start 14 24 - 7.3125 0.000846 0.336 ACTGTACCGAA Rv0135c_nonpal_1 antisense_Rv1461_559_from_start 24 34 + 7.3125 0.000846 0.336 ACTGTACCGAA Rv0023_pal_1 antisense_cobK_311_from_start 16 23 + 8.35443 0.000847 0.474 CGGTACCG Rv0023_pal_1 antisense_cobK_311_from_start 16 23 - 8.35443 0.000847 0.474 CGGTACCG Rv0023_pal_1 sense_cobK_304_from_start 25 32 + 8.35443 0.000847 0.474 CGGTACCG Rv0023_pal_1 sense_cobK_304_from_start 25 32 - 8.35443 0.000847 0.474 CGGTACCG Rv0678_nonpal_1 10_up_of_Rv1866 17 31 + 7.20312 0.000854 0.112 TGGAGGCACCGATAT Rv1167c_nonpal_1 877_up_of_treZ 24 38 + 1.11538 0.000855 0.56 CCGTTTCAGTTCTTT Rv1167c_nonpal_1 sense_treZ_467_to_stop 24 38 + 1.11538 0.000855 0.56 CCGTTTCAGTTCTTT Rv0653c_nonpal_1 sense_gca_460_from_start 12 30 + 4.72152 0.000859 0.113 GCTGGCGTATCAATATCAC Rv0653c_nonpal_1 antisense_gca_467_from_start 18 36 - 4.72152 0.000859 0.113 GCTGGCGTATCAATATCAC Rv2374c_nonpal_1 sense_accA1_598_from_start 3 30 - -4.125 0.00086 0.198 ACAAACCGCTCCAGGAATAGCGTATCGT Rv2374c_nonpal_1 antisense_accA1_595_from_start 8 35 + -4.125 0.00086 0.198 ACAAACCGCTCCAGGAATAGCGTATCGT Rv0273c_nonpal_1 antisense_cobK_311_from_start 7 31 + 5.9625 0.000869 0.296 CGATGATGGCGGTACCGGGATCCCA Rv3488_nonpal_1 antisense_cobK_311_from_start 7 20 - 2.88235 0.00087 0.16 TACCGCCATCATCG Rv2324_nonpal_1 antisense_fadE7_121_to_stop 20 38 - 7.14493 0.00087 0.169 GCGGCAACGGGATATCGCT Rv1556_nonpal_1 sense_Rv1461_552_from_start 7 23 + 0.468085 0.000874 0.294 GGAATATTTCGGTACAG Rv0494_nonpal_2 sense_fadE7_118_to_stop 25 39 - -0.484211 0.000877 1 TGCCGGATGACCGGG Rv1219c_pal_1 antisense_Rv0370c_389_from_start 4 12 + 7.11392 0.000881 0.194 CGATGAGCA Rv1219c_pal_1 antisense_Rv0370c_389_from_start 4 12 - 7.11392 0.000881 0.194 TGCTCATCG Rv0135c_nonpal_2 93_up_of_lpqG 4 31 + -15.6702 0.000883 0.464 CATTGTAGGGCCCGTCGATGCCAGTACC Rv3736_nonpal_1 sense_pyrC_548_to_stop 26 40 - 6.86957 0.000885 0.626 GACCTCGGCGGTGAT Rv3736_nonpal_1 antisense_pyrC_541_to_stop 8 22 + 6.86957 0.000885 0.626 GACCTCGGCGGTGAT Rv3736_nonpal_1 sense_Rv1278_1158_to_stop 18 32 + 6.86957 0.000885 0.626 GGAGAGGTCGCTGAC Rv2011c_nonpal_1 antisense_rocA_790_to_stop 8 26 + 7.2 0.000886 0.503 ATGGTAGCGGCCGATATTG Rv2011c_nonpal_1 sense_rocA_797_to_stop 22 40 - 7.2 0.000886 0.503 ATGGTAGCGGCCGATATTG Rv1846c_pal_1 antisense_Rv1461_416_from_start 16 30 + 3.24211 0.000887 0.239 ACTCCAGCTACTAAT Rv1846c_pal_1 antisense_Rv1461_416_from_start 16 30 - 3.24211 0.000887 0.239 ATTAGTAGCTGGAGT Rv0678_pal_2 93_up_of_lpqG 21 36 + 5.49333 0.000889 0.255 ATGCCAGTACCCCGAA Rv0678_pal_2 93_up_of_lpqG 21 36 - 5.49333 0.000889 0.255 TTCGGGGTACTGGCAT Rv3849_nonpal_1 antisense_Rv1461_416_from_start 10 21 - 6.15068 0.00089 0.549 TGGAGTAGCCGC Rv0653c_pal_1 antisense_fadE7_121_to_stop 15 38 + 5.72152 0.000891 0.103 ACTCCAGCGATATCCCGTTGCCGC Rv0653c_pal_1 antisense_fadE7_121_to_stop 15 38 - 5.72152 0.000891 0.103 GCGGCAACGGGATATCGCTGGAGT Rv0324_nonpal_1 sense_PPE24_1577_to_stop 4 11 + -0.367647 0.000892 0.0937 TGACGATA Rv0324_nonpal_1 sense_PPE24_1352_to_stop 4 11 + -0.367647 0.000892 0.0937 TGACGATA Rv0324_nonpal_1 sense_PPE24_1277_to_stop 4 11 + -0.367647 0.000892 0.0937 TGACGATA Rv0678_nonpal_2 antisense_gca_467_from_start 13 37 + -35.547 0.000892 1 GACTTGTGATATTGATACGCCAGCA Rv0678_nonpal_2 sense_gca_460_from_start 11 35 - -35.547 0.000892 1 GACTTGTGATATTGATACGCCAGCA Rv0494_nonpal_2 antisense_Rv1251c_1309_from_start 12 26 - -0.557895 0.000893 1 AGGCGCTGGAGCCGC Rv1816_pal_2 antisense_Rv1251c_1309_from_start 30 38 + 8.28767 0.000895 0.267 AGCTGAACG Rv1816_pal_2 antisense_Rv1251c_1309_from_start 30 38 - 8.28767 0.000895 0.267 CGTTCAGCT Rv0678_nonpal_1 antisense_Rv2279_293_to_stop 8 22 - 7.125 0.000895 0.112 AGTACACATCGATCC Rv0678_nonpal_1 sense_Rv2279_300_to_stop 26 40 + 7.125 0.000895 0.112 AGTACACATCGATCC Rv3246c_pal_1 sense_bioB_253_to_stop 24 39 + 7.04878 0.000898 0.0804 AATGCCGGTCGGTGAC Rv3246c_pal_1 sense_bioB_253_to_stop 24 39 - 7.04878 0.000898 0.0804 GTCACCGACCGGCATT Rv1674c_pal_1 sense_metA_384_from_start 6 27 + 4.21875 0.000906 0.08 CAAGATTTCCGCTGATCTCGAT Rv1674c_pal_1 sense_metA_384_from_start 6 27 - 4.21875 0.000906 0.08 ATCGAGATCAGCGGAAATCTTG Rv1675c_nonpal_1 antisense_gca_467_from_start 3 23 + -5.13462 0.000915 1 CATGCCGTAAGACTTGTGATA Rv2034_nonpal_1 1682_down_of_Rv3180c 2 12 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 43_up_of_Rv3179 2 12 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 9761_down_of_Rv3190c 2 12 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 6724_up_of_Rv3188 2 12 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 5189_up_of_Rv3186 2 12 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 5195_up_of_Rv3186 8 18 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 1688_down_of_Rv3180c 8 18 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 9767_down_of_Rv3190c 8 18 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 49_up_of_Rv3179 8 18 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 6730_up_of_Rv3188 8 18 - 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 9760_down_of_Rv3190c 30 40 + 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 5188_up_of_Rv3186 30 40 + 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 6723_up_of_Rv3188 30 40 + 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 42_up_of_Rv3179 30 40 + 7.60294 0.000916 0.253 CTTATAACCGA Rv2034_nonpal_1 1681_down_of_Rv3180c 30 40 + 7.60294 0.000916 0.253 CTTATAACCGA Rv1353c_nonpal_1 sense_Rv2038c_183_from_start 13 27 + 7.27273 0.000922 0.134 GTGGGCGTATCCGGA Rv2324_nonpal_2 antisense_pyrC_541_to_stop 4 18 - 5.92771 0.000925 0.318 CCGCCGAGGTCACCC Rv1473A_pal_1 sense_gca_460_from_start 18 29 + 5.91429 0.000925 0.313 GTATCAATATCA Rv1473A_pal_1 antisense_gca_467_from_start 19 30 + 5.91429 0.000925 0.313 TGATATTGATAC Rv1473A_pal_1 sense_gca_460_from_start 18 29 - 5.91429 0.000925 0.313 TGATATTGATAC Rv1473A_pal_1 antisense_gca_467_from_start 19 30 - 5.91429 0.000925 0.313 GTATCAATATCA Rv3488_nonpal_1 10_up_of_Rv1866 20 33 + 2.66176 0.000926 0.16 AGGCACCGATATGG Rv0880_nonpal_1 antisense_Rv1461_559_from_start 5 28 - -1.66316 0.000929 0.189 ACAGTAATCCCTGCCGGCGATAAT Rv2642_nonpal_1 antisense_accA1_595_from_start 5 29 + 1.40698 0.00093 0.132 AACACAAACCGCTCCAGGAATAGCG Rv2642_nonpal_1 sense_accA1_598_from_start 9 33 - 1.40698 0.00093 0.132 AACACAAACCGCTCCAGGAATAGCG Rv2887_pal_1 1662_up_of_Rv2018 17 31 + 5.375 0.000931 0.337 TCCAGTGAAATTGAT Rv3249c_pal_1 sense_gca_460_from_start 17 28 + 7.29231 0.000934 0.212 CGTATCAATATC Rv3249c_pal_1 antisense_gca_467_from_start 20 31 + 7.29231 0.000934 0.212 GATATTGATACG Rv3249c_pal_1 sense_gca_460_from_start 17 28 - 7.29231 0.000934 0.212 GATATTGATACG Rv3249c_pal_1 antisense_gca_467_from_start 20 31 - 7.29231 0.000934 0.212 CGTATCAATATC Rv2887_pal_1 1662_up_of_Rv2018 17 31 - 5.3625 0.000935 0.337 ATCAATTTCACTGGA Rv0022c_nonpal_1 sense_pks9_325_to_stop 18 32 - 6.35616 0.000938 0.169 CCGATAGCCATCTGG Rv3676_nonpal_1 sense_Rv0674_10_to_stop 16 36 - -5.51923 0.000942 1 GATCACTCATGTCACCTCCAG Rv0691c_nonpal_1 10_up_of_Rv1866 14 27 + 5.89062 0.000947 0.249 TGCTGGAGGCACCG Rv0981_nonpal_2 sense_accA1_598_from_start 13 33 + 1.92632 0.000948 0.322 ATTCCTGGAGCGGTTTGTGTT Rv0981_nonpal_2 antisense_accA1_595_from_start 5 25 - 1.92632 0.000948 0.322 ATTCCTGGAGCGGTTTGTGTT Rv0653c_pal_1 antisense_gca_467_from_start 12 35 + 5.56962 0.000952 0.103 AGACTTGTGATATTGATACGCCAG Rv0653c_pal_1 sense_gca_460_from_start 13 36 + 5.56962 0.000952 0.103 CTGGCGTATCAATATCACAAGTCT Rv0653c_pal_1 antisense_gca_467_from_start 12 35 - 5.56962 0.000952 0.103 CTGGCGTATCAATATCACAAGTCT Rv0653c_pal_1 sense_gca_460_from_start 13 36 - 5.56962 0.000952 0.103 AGACTTGTGATATTGATACGCCAG Rv2989_nonpal_2 sense_pyrC_548_to_stop 20 34 - 2.97701 0.000954 0.991 GGCGGTGATCGAAAT Rv2989_nonpal_2 antisense_pyrC_541_to_stop 14 28 + 2.97701 0.000954 0.991 GGCGGTGATCGAAAT Rv0275c_nonpal_1 93_up_of_lpqG 4 29 + -6.74038 0.000958 0.135 CATTGTAGGGCCCGTCGATGCCAGTA Rv3488_pal_1 sense_PPE24_1352_to_stop 7 14 + 4.02941 0.000962 0.169 CGATACCC Rv3488_pal_1 sense_PPE24_1577_to_stop 7 14 + 4.02941 0.000962 0.169 CGATACCC Rv3488_pal_1 sense_PPE24_1277_to_stop 7 14 + 4.02941 0.000962 0.169 CGATACCC Rv3488_pal_1 sense_PPE24_1577_to_stop 7 14 - 4.02941 0.000962 0.169 GGGTATCG Rv3488_pal_1 sense_PPE24_1277_to_stop 7 14 - 4.02941 0.000962 0.169 GGGTATCG Rv3488_pal_1 sense_PPE24_1352_to_stop 7 14 - 4.02941 0.000962 0.169 GGGTATCG Rv0678_nonpal_1 sense_bioB_253_to_stop 5 19 - 7 0.000963 0.112 CCAGGTCGGCGAACG Rv3830c_nonpal_2 antisense_aldA_642_from_start 9 35 + -15.0577 0.000963 0.412 CGTGACTGCTGGAGGTGACGATGTTGA Rv2788_nonpal_2 antisense_rocA_790_to_stop 1 28 + -14.2442 0.000964 0.172 GATAGCTATGGTAGCGGCCGATATTGGT Rv0023_nonpal_1 sense_fadE7_118_to_stop 13 33 + 6.53521 0.000964 0.106 ATCGCTGGAGTACCCGGTCAT Rv0023_nonpal_1 antisense_fadE7_121_to_stop 5 25 - 6.53521 0.000964 0.106 ATCGCTGGAGTACCCGGTCAT Rv1776c_nonpal_1 sense_metA_384_from_start 20 25 + 8.42466 0.000966 0.745 ATCTCG Rv1776c_nonpal_1 antisense_metA_391_from_start 23 28 - 8.42466 0.000966 0.745 ATCTCG Rv3849_nonpal_1 7_up_of_Rv1049 2 13 + 5.87671 0.000972 0.549 CCCCTTTGCCCA Rv3849_nonpal_1 4_up_of_Rv1049 25 36 - 5.87671 0.000972 0.549 CCCCTTTGCCCA Rv0678_pal_1 sense_Rv1461_552_from_start 3 9 + -1.57353 0.000973 0.358 TCAAGGA Rv0678_pal_1 antisense_Rv1461_472_from_start 8 14 + -1.57353 0.000973 0.358 TCCTTGA Rv0678_pal_1 sense_Rv1461_552_from_start 3 9 - -1.57353 0.000973 0.358 TCCTTGA Rv0678_pal_1 antisense_Rv1461_472_from_start 8 14 - -1.57353 0.000973 0.358 TCAAGGA Rv0678_pal_1 sense_Rv1461_475_from_start 24 30 + -1.57353 0.000973 0.358 TCAAGGA Rv0678_pal_1 sense_Rv1461_475_from_start 24 30 - -1.57353 0.000973 0.358 TCCTTGA Rv0135c_nonpal_1 antisense_Rv2963_530_to_stop 24 34 + 6.84375 0.000975 0.336 CGGGTACCCAT Rv0135c_nonpal_1 sense_Rv2963_537_to_stop 14 24 - 6.84375 0.000975 0.336 CGGGTACCCAT Rv3830c_nonpal_2 antisense_frdA_787_from_start 1 27 + -15.1154 0.000975 0.412 TGCCGAGGTCGTAATCCTGGAGGTAGC Rv3488_pal_2 antisense_frdA_787_from_start 4 11 + 1.88372 0.000976 0.271 CGAGGTCG Rv3488_pal_2 antisense_frdA_787_from_start 4 11 - 1.88372 0.000976 0.271 CGACCTCG Rv2788_pal_1 antisense_pyrC_541_to_stop 9 30 + 2.83333 0.000976 0.131 ACCTCGGCGGTGATCGAAATAC Rv2788_pal_1 sense_pyrC_548_to_stop 18 39 + 2.83333 0.000976 0.131 GTATTTCGATCACCGCCGAGGT Rv2788_pal_1 antisense_pyrC_541_to_stop 9 30 - 2.83333 0.000976 0.131 GTATTTCGATCACCGCCGAGGT Rv2788_pal_1 sense_pyrC_548_to_stop 18 39 - 2.83333 0.000976 0.131 ACCTCGGCGGTGATCGAAATAC Rv0022c_nonpal_1 antisense_Rv1251c_1309_from_start 16 30 - 6.26027 0.000977 0.169 TTGAAGGCGCTGGAG Rv0273c_nonpal_2 sense_mmpL4_1184_to_stop 10 35 - -36.4662 0.000978 0.354 GCTTCGAATTGGTCTCCAGAAATCAT Rv0273c_nonpal_2 antisense_mmpL4_1187_to_stop 3 28 + -36.4662 0.000978 0.354 GCTTCGAATTGGTCTCCAGAAATCAT Rv0678_nonpal_1 sense_Rv1278_1158_to_stop 20 34 + 6.96875 0.000981 0.112 AGAGGTCGCTGACCT Rv0339c_nonpal_1 3353_up_of_Rv3179 15 28 + 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 10034_up_of_Rv3188 15 28 + 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 8499_up_of_Rv3186 15 28 + 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 4992_down_of_Rv3180c 15 28 + 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 13071_down_of_Rv3190c 15 28 + 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 3360_up_of_Rv3179 20 33 - 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 4999_down_of_Rv3180c 20 33 - 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 8506_up_of_Rv3186 20 33 - 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 10041_up_of_Rv3188 20 33 - 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv0339c_nonpal_1 13078_down_of_Rv3190c 20 33 - 6.63218 0.000983 0.384 AAACCGATTGGTGT Rv3488_pal_1 antisense_Rv1461_559_from_start 4 11 + 3.91176 0.000984 0.169 TATTATCG Rv3488_pal_1 antisense_Rv1461_559_from_start 4 11 - 3.91176 0.000984 0.169 CGATAATA Rv3765c_nonpal_1 antisense_rocA_790_to_stop 7 26 - -2.33684 0.000986 0.465 CAATATCGGCCGCTACCATA Rv0818_nonpal_1 antisense_metA_391_from_start 14 34 + 0.680851 0.000987 0.317 GTCACGTATCGAGATCAGCGG Rv0818_nonpal_1 sense_metA_384_from_start 14 34 - 0.680851 0.000987 0.317 GTCACGTATCGAGATCAGCGG Rv2642_nonpal_1 13071_down_of_Rv3190c 16 40 + 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 4992_down_of_Rv3180c 16 40 + 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 10034_up_of_Rv3188 16 40 + 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 3353_up_of_Rv3179 16 40 + 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 8499_up_of_Rv3186 16 40 + 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 13078_down_of_Rv3190c 8 32 - 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 8506_up_of_Rv3186 8 32 - 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 4999_down_of_Rv3180c 8 32 - 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 3360_up_of_Rv3179 8 32 - 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv2642_nonpal_1 10041_up_of_Rv3188 8 32 - 1.2093 0.000989 0.132 AACCGATTGGTGTACTTTGTGCTTT Rv0135c_nonpal_1 sense_Rv2963_537_to_stop 15 25 + 6.79688 0.00099 0.336 TGGGTACCCGA Rv0135c_nonpal_1 antisense_Rv2963_530_to_stop 23 33 - 6.79688 0.00099 0.336 TGGGTACCCGA Rv2359_pal_1 sense_Rv2279_300_to_stop 9 29 + -7.73333 0.000992 0.143 TACGGATAGGGGATCTCAGTA Rv2359_pal_1 antisense_Rv2279_293_to_stop 19 39 + -7.73333 0.000992 0.143 TACTGAGATCCCCTATCCGTA Rv2359_pal_1 sense_Rv2279_300_to_stop 9 29 - -7.73333 0.000992 0.143 TACTGAGATCCCCTATCCGTA Rv2359_pal_1 antisense_Rv2279_293_to_stop 19 39 - -7.73333 0.000992 0.143 TACGGATAGGGGATCTCAGTA Rv1353c_nonpal_1 antisense_cobK_311_from_start 2 16 - 7.15152 0.000992 0.14 GCCATCATCGCGGTA Rv1956_pal_1 sense_pyrC_548_to_stop 18 25 + 5.37209 0.000995 0.203 GTATTTCG Rv1956_pal_1 antisense_pyrC_541_to_stop 23 30 + 5.37209 0.000995 0.203 CGAAATAC Rv1956_pal_1 sense_pyrC_548_to_stop 18 25 - 5.37209 0.000995 0.203 CGAAATAC Rv1956_pal_1 antisense_pyrC_541_to_stop 23 30 - 5.37209 0.000995 0.203 GTATTTCG Rv1846c_pal_1 antisense_Rv3282_217_to_stop 16 30 + 2.86316 0.000997 0.239 CCTCCAGATCGGAGG Rv1846c_pal_1 447_down_of_accE5 16 30 + 2.86316 0.000997 0.239 CCTCCAGATCGGAGG Rv1846c_pal_1 447_down_of_accE5 16 30 - 2.86316 0.000997 0.239 CCTCCGATCTGGAGG Rv1846c_pal_1 antisense_Rv3282_217_to_stop 16 30 - 2.86316 0.000997 0.239 CCTCCGATCTGGAGG Rv3066_nonpal_1 sense_Rv2963_537_to_stop 6 25 - 4.31034 0.000997 0.874 TCGGGTACCCATGCCGCGAT Rv0465c_nonpal_2 37_up_of_Rv2172c 9 36 + -2.96552 0.000997 0.609 AGCCATGCTCCAGCGGTTGATTTGGCTA Rv0465c_nonpal_2 sense_mptA_23_from_start 9 36 + -2.96552 0.000997 0.609 AGCCATGCTCCAGCGGTTGATTTGGCTA Rv0302_pal_1 antisense_Rv0370c_389_from_start 19 30 + 7.02206 0.001 0.249 GAGGGGTCGGTC Rv0302_pal_1 antisense_Rv0370c_389_from_start 19 30 - 7.02206 0.001 0.249 GACCGACCCCTC Rv3488_nonpal_1 sense_Rv1461_552_from_start 8 21 - 2.36765 0.00101 0.16 GTACCGAAATATTC Rv3488_nonpal_1 antisense_Rv1461_559_from_start 27 40 + 2.36765 0.00101 0.16 GTACCGAAATATTC Rv1353c_nonpal_2 10034_up_of_Rv3188 18 38 - -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 13071_down_of_Rv3190c 18 38 - -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 8499_up_of_Rv3186 18 38 - -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 4992_down_of_Rv3180c 18 38 - -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 3353_up_of_Rv3179 18 38 - -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 sense_gca_460_from_start 4 24 + -29.6068 0.00101 0.136 ACCGACATGCTGGCGTATCAA Rv1353c_nonpal_2 8506_up_of_Rv3186 10 30 + -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 4999_down_of_Rv3180c 10 30 + -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 10041_up_of_Rv3188 10 30 + -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 13078_down_of_Rv3190c 10 30 + -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv1353c_nonpal_2 3360_up_of_Rv3179 10 30 + -29.6068 0.00101 0.136 AGCACAAAGTACACCAATCGG Rv0472c_nonpal_1 93_up_of_lpqG 22 32 + 1.66346 0.00101 0.211 TGCCAGTACCC Rv1674c_pal_1 sense_Rv1461_552_from_start 8 29 + 3.95833 0.00101 0.08 GAATATTTCGGTACAGTAATCC Rv1674c_pal_1 antisense_Rv1461_559_from_start 19 40 + 3.95833 0.00101 0.08 GGATTACTGTACCGAAATATTC Rv1674c_pal_1 sense_Rv1461_552_from_start 8 29 - 3.95833 0.00101 0.08 GGATTACTGTACCGAAATATTC Rv1674c_pal_1 antisense_Rv1461_559_from_start 19 40 - 3.95833 0.00101 0.08 GAATATTTCGGTACAGTAATCC Rv1404_nonpal_1 antisense_rocA_790_to_stop 2 27 - 4.475 0.00101 0.0486 CCAATATCGGCCGCTACCATAGCTAT Rv0081_pal_1 antisense_Rv2279_293_to_stop 2 17 + 5.25333 0.00101 0.331 TGAACCGGATCGATGT Rv0081_pal_1 antisense_Rv2279_293_to_stop 2 17 - 5.25333 0.00101 0.331 ACATCGATCCGGTTCA Rv3488_nonpal_2 antisense_rocA_790_to_stop 13 40 + -24.7021 0.00101 0.131 AGCGGCCGATATTGGTACCCACCCACTG Rv3488_nonpal_2 sense_rocA_797_to_stop 8 35 - -24.7021 0.00101 0.131 AGCGGCCGATATTGGTACCCACCCACTG Rv3249c_nonpal_2 antisense_Rv1251c_1309_from_start 23 37 - 6.46667 0.00101 0.542 GTTCAGCTTGAAGGC Rv3246c_pal_1 1662_up_of_Rv2018 23 38 + 6.81707 0.00102 0.0864 GAAATTGATACAAGAT Rv3246c_pal_1 1662_up_of_Rv2018 23 38 - 6.81707 0.00102 0.0864 ATCTTGTATCAATTTC Rv0678_nonpal_1 antisense_mmpL4_1187_to_stop 3 17 - 6.90625 0.00102 0.112 AGACCAATTCGAAGC Rv0678_nonpal_1 sense_mmpL4_1184_to_stop 21 35 + 6.90625 0.00102 0.112 AGACCAATTCGAAGC Rv0302_nonpal_1 sense_Rv1461_552_from_start 5 19 - 6.36232 0.00102 0.199 ACCGAAATATTCCTT Rv3416_nonpal_1 sense_fadE7_118_to_stop 11 35 + -1.64948 0.00102 0.484 ATATCGCTGGAGTACCCGGTCATCC Rv3416_nonpal_1 antisense_fadE7_121_to_stop 3 27 - -1.64948 0.00102 0.484 ATATCGCTGGAGTACCCGGTCATCC Rv0023_nonpal_2 sense_pks6_423_from_start 8 35 + -29.1731 0.00103 0.152 CGATAACAGCGTATCCAGATCGTGGGTT Rv0023_nonpal_2 sense_pks6_424_from_start 8 35 + -29.1731 0.00103 0.152 CGATAACAGCGTATCCAGATCGTGGGTT Rv0023_nonpal_2 antisense_pks6_430_from_start 13 40 - -29.1731 0.00103 0.152 CGATAACAGCGTATCCAGATCGTGGGTT Rv0023_nonpal_2 antisense_pks6_431_from_start 13 40 - -29.1731 0.00103 0.152 CGATAACAGCGTATCCAGATCGTGGGTT Rv3249c_pal_2 antisense_pks6_430_from_start 14 28 + 5.41892 0.00103 0.112 ACCCACGATCTGGAT Rv3249c_pal_2 antisense_pks6_431_from_start 14 28 + 5.41892 0.00103 0.112 ACCCACGATCTGGAT Rv3249c_pal_2 sense_pks6_424_from_start 20 34 + 5.41892 0.00103 0.112 ATCCAGATCGTGGGT Rv3249c_pal_2 sense_pks6_423_from_start 20 34 + 5.41892 0.00103 0.112 ATCCAGATCGTGGGT Rv3249c_pal_2 antisense_pks6_431_from_start 14 28 - 5.41892 0.00103 0.112 ATCCAGATCGTGGGT Rv3249c_pal_2 antisense_pks6_430_from_start 14 28 - 5.41892 0.00103 0.112 ATCCAGATCGTGGGT Rv3249c_pal_2 sense_pks6_424_from_start 20 34 - 5.41892 0.00103 0.112 ACCCACGATCTGGAT Rv3249c_pal_2 sense_pks6_423_from_start 20 34 - 5.41892 0.00103 0.112 ACCCACGATCTGGAT Rv0678_nonpal_1 sense_PPE34_1439_from_start 2 16 - 6.89062 0.00103 0.112 GGAATCCGGGGAAAA Rv0678_nonpal_1 sense_PPE34_1664_from_start 2 16 - 6.89062 0.00103 0.112 GGAATCCGGGGAAAA Rv0678_nonpal_1 sense_PPE34_3066_to_stop 2 16 - 6.89062 0.00103 0.112 GGAATCCGGGGAAAA Rv0678_nonpal_1 antisense_PPE34_1661_from_start 22 36 + 6.89062 0.00103 0.112 GGAATCCGGGGAAAA Rv0135c_nonpal_1 sense_rocA_797_to_stop 14 24 - 6.70312 0.00103 0.336 TTGGTACCCAC Rv0135c_nonpal_1 antisense_rocA_790_to_stop 24 34 + 6.70312 0.00103 0.336 TTGGTACCCAC Rv0023_nonpal_2 antisense_pyrC_541_to_stop 10 37 + -29.2019 0.00103 0.152 CCTCGGCGGTGATCGAAATACCCTGGTC Rv0023_nonpal_2 sense_pyrC_548_to_stop 11 38 - -29.2019 0.00103 0.152 CCTCGGCGGTGATCGAAATACCCTGGTC Rv0602c_nonpal_1 sense_Rv0674_10_to_stop 20 31 - 6.0137 0.00103 0.481 CTCATGTCACCT Rv0602c_nonpal_1 sense_PPE34_3066_to_stop 27 38 - 6.0137 0.00103 0.481 CTCACTGTCACG Rv0602c_nonpal_1 sense_PPE34_1664_from_start 27 38 - 6.0137 0.00103 0.481 CTCACTGTCACG Rv0602c_nonpal_1 sense_PPE34_1439_from_start 27 38 - 6.0137 0.00103 0.481 CTCACTGTCACG Rv3849_nonpal_1 sense_Rv1278_1158_to_stop 20 31 + 5.65753 0.00103 0.549 AGAGGTCGCTGA Rv1956_pal_1 10_up_of_Rv1866 26 33 + 5.27907 0.00104 0.203 CGATATGG Rv1956_pal_1 10_up_of_Rv1866 26 33 - 5.27907 0.00104 0.203 CCATATCG Rv1556_nonpal_1 antisense_frdA_787_from_start 18 34 + -0.202128 0.00104 0.325 TGGAGGTAGCGGTAGCC Rv0653c_pal_1 sense_Rv1461_552_from_start 1 24 + 5.36709 0.00104 0.103 TTTCAAGGAATATTTCGGTACAGT Rv0653c_pal_1 sense_Rv1461_552_from_start 1 24 - 5.36709 0.00104 0.103 ACTGTACCGAAATATTCCTTGAAA Rv0047c_nonpal_2 sense_Rv0674_10_to_stop 11 38 + -29.8718 0.00104 0.189 AACTCCTGGAGGTGACATGAGTGATCTG Rv3133c_pal_1 sense_pyrC_548_to_stop 1 16 + 7.09589 0.00104 0.44 ATGGGCTAAGGACCAG Rv3133c_pal_1 sense_pyrC_548_to_stop 1 16 - 7.09589 0.00104 0.44 CTGGTCCTTAGCCCAT Rv0023_nonpal_1 3360_up_of_Rv3179 15 35 + 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 4999_down_of_Rv3180c 15 35 + 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 8506_up_of_Rv3186 15 35 + 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 13078_down_of_Rv3190c 15 35 + 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 10041_up_of_Rv3188 15 35 + 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 4992_down_of_Rv3180c 13 33 - 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 10034_up_of_Rv3188 13 33 - 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 13071_down_of_Rv3190c 13 33 - 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 8499_up_of_Rv3186 13 33 - 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv0023_nonpal_1 3353_up_of_Rv3179 13 33 - 6.38028 0.00105 0.106 AAAGTACACCAATCGGTTTAC Rv1473A_nonpal_2 antisense_Rv0370c_389_from_start 5 12 + 1.34247 0.00105 0.112 GATGAGCA Rv0047c_nonpal_2 sense_PPE34_1439_from_start 1 28 + -29.9145 0.00105 0.189 TTTTTCCCCGGATTCCCTCCAGATTACG Rv0047c_nonpal_2 sense_PPE34_1664_from_start 1 28 + -29.9145 0.00105 0.189 TTTTTCCCCGGATTCCCTCCAGATTACG Rv0047c_nonpal_2 sense_PPE34_3066_to_stop 1 28 + -29.9145 0.00105 0.189 TTTTTCCCCGGATTCCCTCCAGATTACG Rv0047c_nonpal_2 antisense_PPE34_1661_from_start 10 37 - -29.9145 0.00105 0.189 TTTTTCCCCGGATTCCCTCCAGATTACG Rv1816_nonpal_1 antisense_Rv0370c_389_from_start 5 21 - 6.4 0.00105 0.18 CTCCAGTGCTGCTCATC Rv1404_nonpal_1 antisense_Rv1461_559_from_start 3 28 + 4.3625 0.00106 0.0488 TTATTATCGCCGGCAGGGATTACTGT Rv3488_pal_1 sense_Rv2963_537_to_stop 2 9 + 3.58824 0.00106 0.172 TGCTATCG Rv3488_pal_1 sense_Rv2963_537_to_stop 2 9 - 3.58824 0.00106 0.172 CGATAGCA Rv1049_nonpal_2 3360_up_of_Rv3179 18 32 + 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 13078_down_of_Rv3190c 18 32 + 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 4999_down_of_Rv3180c 18 32 + 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 8506_up_of_Rv3186 18 32 + 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 10041_up_of_Rv3188 18 32 + 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 13071_down_of_Rv3190c 16 30 - 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 10034_up_of_Rv3188 16 30 - 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 3353_up_of_Rv3179 16 30 - 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 4992_down_of_Rv3180c 16 30 - 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1049_nonpal_2 8499_up_of_Rv3186 16 30 - 5.8 0.00107 0.144 GTACACCAATCGGTT Rv1473A_nonpal_2 sense_gca_460_from_start 22 29 + 1.28767 0.00107 0.112 CAATATCA Rv1473A_nonpal_2 antisense_gca_467_from_start 19 26 - 1.28767 0.00107 0.112 CAATATCA Rv3249c_nonpal_2 antisense_pyrC_541_to_stop 8 22 + 6.33333 0.00108 0.542 GACCTCGGCGGTGAT Rv3249c_nonpal_2 sense_pyrC_548_to_stop 26 40 - 6.33333 0.00108 0.542 GACCTCGGCGGTGAT Rv1956_nonpal_1 sense_Rv2963_537_to_stop 3 23 + 3.7907 0.00109 0.256 GCTATCGCGGCATGGGTACCC Rv1846c_pal_1 sense_Rv2038c_183_from_start 3 17 + 2.65263 0.00109 0.239 ACGCTGGACTGTGGG Rv1846c_pal_1 sense_Rv2038c_183_from_start 3 17 - 2.65263 0.00109 0.239 CCCACAGTCCAGCGT Rv1816_nonpal_1 sense_Rv2279_300_to_stop 10 26 + 6.33846 0.00109 0.18 ACGGATAGGGGATCTCA Rv1816_nonpal_1 antisense_Rv2279_293_to_stop 22 38 - 6.33846 0.00109 0.18 ACGGATAGGGGATCTCA Rv2506_nonpal_1 sense_fadE7_118_to_stop 10 28 + 1.02128 0.00109 0.425 GATATCGCTGGAGTACCCG Rv2506_nonpal_1 antisense_fadE7_121_to_stop 10 28 - 1.02128 0.00109 0.425 GATATCGCTGGAGTACCCG Rv3416_nonpal_1 antisense_Rv2279_293_to_stop 13 37 + -1.89691 0.00109 0.484 GATGTGTACTGAGATCCCCTATCCG Rv3416_nonpal_1 sense_Rv2279_300_to_stop 11 35 - -1.89691 0.00109 0.484 GATGTGTACTGAGATCCCCTATCCG Rv1404_nonpal_1 antisense_accA1_595_from_start 6 31 + 4.275 0.00109 0.0488 ACACAAACCGCTCCAGGAATAGCGTA Rv1404_nonpal_1 sense_accA1_598_from_start 7 32 - 4.275 0.00109 0.0488 ACACAAACCGCTCCAGGAATAGCGTA Rv3681c_pal_1 13071_down_of_Rv3190c 11 24 + 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 3353_up_of_Rv3179 11 24 + 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 8499_up_of_Rv3186 11 24 + 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 4992_down_of_Rv3180c 11 24 + 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 10034_up_of_Rv3188 11 24 + 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 3353_up_of_Rv3179 11 24 - 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 3360_up_of_Rv3179 24 37 + 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 4999_down_of_Rv3180c 24 37 + 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 10034_up_of_Rv3188 11 24 - 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 4992_down_of_Rv3180c 11 24 - 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 10041_up_of_Rv3188 24 37 + 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 13071_down_of_Rv3190c 11 24 - 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 8506_up_of_Rv3186 24 37 + 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 8499_up_of_Rv3186 11 24 - 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 13078_down_of_Rv3190c 24 37 + 6.64286 0.0011 0.231 CAATCGGTTTACTG Rv3681c_pal_1 8506_up_of_Rv3186 24 37 - 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 10041_up_of_Rv3188 24 37 - 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 13078_down_of_Rv3190c 24 37 - 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 4999_down_of_Rv3180c 24 37 - 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv3681c_pal_1 3360_up_of_Rv3179 24 37 - 6.64286 0.0011 0.231 CAGTAAACCGATTG Rv0081_nonpal_1 sense_metA_384_from_start 3 17 + 4.12 0.0011 0.26 GCTCAAGATTTCCGC Rv1219c_pal_1 sense_Rv0674_10_to_stop 6 14 + 6.56962 0.0011 0.194 AACTCAACT Rv1219c_pal_1 sense_Rv0674_10_to_stop 6 14 - 6.56962 0.0011 0.194 AGTTGAGTT Rv3488_nonpal_1 49_up_of_Rv3179 3 16 - 2.04412 0.0011 0.16 TATAACCGACACTG Rv3488_nonpal_1 5195_up_of_Rv3186 3 16 - 2.04412 0.0011 0.16 TATAACCGACACTG Rv3488_nonpal_1 6730_up_of_Rv3188 3 16 - 2.04412 0.0011 0.16 TATAACCGACACTG Rv3488_nonpal_1 1688_down_of_Rv3180c 3 16 - 2.04412 0.0011 0.16 TATAACCGACACTG Rv3488_nonpal_1 9767_down_of_Rv3190c 3 16 - 2.04412 0.0011 0.16 TATAACCGACACTG Rv2887_pal_1 sense_Rv1461_552_from_start 2 16 + 4.975 0.0011 0.337 TTCAAGGAATATTTC Rv2887_pal_1 sense_Rv1461_552_from_start 2 16 - 4.975 0.0011 0.337 GAAATATTCCTTGAA Rv0339c_nonpal_1 sense_fadE7_118_to_stop 27 40 - 6.35632 0.0011 0.4 GTGCCGGATGACCG Rv1167c_nonpal_1 antisense_pyrC_541_to_stop 5 19 - 0.192308 0.0011 0.56 ACCGCCGAGGTCACC Rv0302_nonpal_1 42_up_of_Rv3179 12 26 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 6723_up_of_Rv3188 12 26 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 1681_down_of_Rv3180c 12 26 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 9760_down_of_Rv3190c 12 26 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 5188_up_of_Rv3186 12 26 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 5182_up_of_Rv3186 18 32 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 6717_up_of_Rv3188 18 32 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 9754_down_of_Rv3190c 18 32 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 36_up_of_Rv3179 18 32 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 1675_down_of_Rv3180c 18 32 + 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 1682_down_of_Rv3180c 16 30 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 6724_up_of_Rv3188 16 30 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 5189_up_of_Rv3186 16 30 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 43_up_of_Rv3179 16 30 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 9761_down_of_Rv3190c 16 30 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 1688_down_of_Rv3180c 22 36 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 6730_up_of_Rv3188 22 36 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 9767_down_of_Rv3190c 22 36 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 5195_up_of_Rv3186 22 36 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0302_nonpal_1 49_up_of_Rv3179 22 36 - 6.2029 0.00111 0.199 TGTATACTGATCGGT Rv0023_nonpal_1 antisense_aldA_642_from_start 13 33 + 6.28169 0.00111 0.108 ACTGCTGGAGGTGACGATGTT Rv0081_nonpal_1 sense_Rv2038c_183_from_start 21 35 - 4.09333 0.00111 0.26 CTCGCCGATCCGGAT Rv3676_pal_1 antisense_gca_467_from_start 8 23 + 1.05714 0.00111 0.626 CGTAAGACTTGTGATA Rv3676_pal_1 antisense_gca_467_from_start 8 23 - 1.05714 0.00111 0.626 TATCACAAGTCTTACG Rv3676_pal_1 sense_gca_460_from_start 25 40 + 1.05714 0.00111 0.626 TATCACAAGTCTTACG Rv3676_pal_1 sense_gca_460_from_start 25 40 - 1.05714 0.00111 0.626 CGTAAGACTTGTGATA Rv3574_nonpal_1 antisense_cobK_311_from_start 16 30 - 4.89706 0.00111 0.255 GGGATCCCGGTACCG Rv3574_nonpal_1 sense_cobK_304_from_start 18 32 + 4.89706 0.00111 0.255 GGGATCCCGGTACCG Rv1816_pal_2 antisense_fadE7_121_to_stop 3 11 + -0.260274 0.00111 0.267 GGATGACCG Rv1816_pal_2 antisense_fadE7_121_to_stop 3 11 - -0.260274 0.00111 0.267 CGGTCATCC Rv1816_pal_2 sense_fadE7_118_to_stop 27 35 + -0.260274 0.00111 0.267 CGGTCATCC Rv1816_pal_2 sense_fadE7_118_to_stop 27 35 - -0.260274 0.00111 0.267 GGATGACCG Rv1719_nonpal_1 sense_Rv2963_537_to_stop 4 20 + 6.06579 0.00112 1 CTATCGCGGCATGGGTA Rv1255c_nonpal_1 sense_gca_460_from_start 1 20 + 2.16092 0.00112 0.391 GCCACCGACATGCTGGCGTA Rv3124_nonpal_1 37_up_of_Rv2172c 5 31 + -9.91346 0.00112 0.165 TCCGAGCCATGCTCCAGCGGTTGATTT Rv3124_nonpal_1 sense_mptA_23_from_start 5 31 + -9.91346 0.00112 0.165 TCCGAGCCATGCTCCAGCGGTTGATTT Rv1033c_nonpal_1 sense_pks6_423_from_start 12 26 + 2.68354 0.00112 0.284 AACAGCGTATCCAGA Rv1033c_nonpal_1 sense_pks6_424_from_start 12 26 + 2.68354 0.00112 0.284 AACAGCGTATCCAGA Rv1033c_nonpal_1 antisense_pks6_431_from_start 22 36 - 2.68354 0.00112 0.284 AACAGCGTATCCAGA Rv1033c_nonpal_1 antisense_pks6_430_from_start 22 36 - 2.68354 0.00112 0.284 AACAGCGTATCCAGA Rv0022c_nonpal_1 antisense_Rv2963_530_to_stop 11 25 - 5.91781 0.00113 0.169 CGAATCGTTCTGGCA Rv0022c_nonpal_1 sense_Rv2963_537_to_stop 23 37 + 5.91781 0.00113 0.169 CGAATCGTTCTGGCA Rv3249c_pal_1 antisense_frdA_787_from_start 5 16 + 7 0.00113 0.231 GAGGTCGTAATC Rv3249c_pal_1 antisense_frdA_787_from_start 5 16 - 7 0.00113 0.231 GATTACGACCTC Rv1828_nonpal_1 sense_Rv1461_475_from_start 15 38 - -3.7766 0.00113 0.291 AATATGACTCCTTGAGCCTCCAGA Rv1990c_nonpal_1 antisense_aldA_642_from_start 24 34 + 6.95385 0.00113 1 TGACGATGTTG Rv2642_nonpal_1 antisense_Rv2279_293_to_stop 4 28 + 0.755814 0.00114 0.133 AACCGGATCGATGTGTACTGAGATC Rv2989_nonpal_1 sense_pyrC_548_to_stop 5 25 - 4.14474 0.00114 0.662 CGAAATACCCTGGTCCTTAGC Rv1167c_nonpal_1 sense_mmpL4_1184_to_stop 9 23 - 0.0769231 0.00114 0.56 TCTCCAGAAATCATC Rv1167c_nonpal_1 antisense_mmpL4_1187_to_stop 15 29 + 0.0769231 0.00114 0.56 TCTCCAGAAATCATC Rv3488_nonpal_2 antisense_Rv1461_559_from_start 5 32 - -25.3617 0.00114 0.131 CGGTACAGTAATCCCTGCCGGCGATAAT Rv1674c_pal_1 13071_down_of_Rv3190c 7 28 + 3.65625 0.00114 0.08 CCTACAGTAAACCGATTGGTGT Rv1674c_pal_1 3353_up_of_Rv3179 7 28 + 3.65625 0.00114 0.08 CCTACAGTAAACCGATTGGTGT Rv1674c_pal_1 10034_up_of_Rv3188 7 28 + 3.65625 0.00114 0.08 CCTACAGTAAACCGATTGGTGT Rv1674c_pal_1 8499_up_of_Rv3186 7 28 + 3.65625 0.00114 0.08 CCTACAGTAAACCGATTGGTGT Rv1674c_pal_1 4992_down_of_Rv3180c 7 28 + 3.65625 0.00114 0.08 CCTACAGTAAACCGATTGGTGT Rv1674c_pal_1 3353_up_of_Rv3179 7 28 - 3.65625 0.00114 0.08 ACACCAATCGGTTTACTGTAGG Rv1674c_pal_1 10034_up_of_Rv3188 7 28 - 3.65625 0.00114 0.08 ACACCAATCGGTTTACTGTAGG Rv1674c_pal_1 4992_down_of_Rv3180c 7 28 - 3.65625 0.00114 0.08 ACACCAATCGGTTTACTGTAGG Rv1674c_pal_1 8499_up_of_Rv3186 7 28 - 3.65625 0.00114 0.08 ACACCAATCGGTTTACTGTAGG Rv1674c_pal_1 13071_down_of_Rv3190c 7 28 - 3.65625 0.00114 0.08 ACACCAATCGGTTTACTGTAGG Rv0691c_pal_2 sense_PE_PGRS57_112_from_start 7 15 + 1.01266 0.00115 0.423 AGTGCGACC Rv0691c_pal_2 sense_PE_PGRS54_112_from_start 7 15 + 1.01266 0.00115 0.423 AGTGCGACC Rv0691c_pal_2 sense_PE_PGRS57_112_from_start 7 15 - 1.01266 0.00115 0.423 GGTCGCACT Rv0691c_pal_2 sense_PE_PGRS54_112_from_start 7 15 - 1.01266 0.00115 0.423 GGTCGCACT Rv0135c_nonpal_1 93_up_of_lpqG 24 34 + 6.3125 0.00115 0.336 CCAGTACCCCG Rv2324_nonpal_1 8506_up_of_Rv3186 8 26 + 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 13078_down_of_Rv3190c 8 26 + 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 3360_up_of_Rv3179 8 26 + 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 10041_up_of_Rv3188 8 26 + 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 4999_down_of_Rv3180c 8 26 + 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 10034_up_of_Rv3188 22 40 - 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 8499_up_of_Rv3186 22 40 - 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 3353_up_of_Rv3179 22 40 - 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 13071_down_of_Rv3190c 22 40 - 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv2324_nonpal_1 4992_down_of_Rv3180c 22 40 - 6.66667 0.00115 0.169 AAAGCACAAAGTACACCAA Rv0135c_nonpal_1 antisense_fadE7_121_to_stop 9 19 - 6.28125 0.00115 0.336 GGAGTACCCGG Rv0135c_nonpal_1 sense_fadE7_118_to_stop 19 29 + 6.28125 0.00115 0.336 GGAGTACCCGG Rv0757_nonpal_1 sense_mptA_23_from_start 3 23 + 4.5443 0.00115 0.595 ACTCCGAGCCATGCTCCAGCG Rv0757_nonpal_1 37_up_of_Rv2172c 3 23 + 4.5443 0.00115 0.595 ACTCCGAGCCATGCTCCAGCG Rv0195_nonpal_1 antisense_PPE34_1661_from_start 22 35 + 3.06383 0.00115 1 GGAATCCGGGGAAA Rv0195_nonpal_1 sense_PPE34_1664_from_start 3 16 - 3.06383 0.00115 1 GGAATCCGGGGAAA Rv0195_nonpal_1 sense_PPE34_3066_to_stop 3 16 - 3.06383 0.00115 1 GGAATCCGGGGAAA Rv0195_nonpal_1 sense_PPE34_1439_from_start 3 16 - 3.06383 0.00115 1 GGAATCCGGGGAAA Rv1473A_pal_2 antisense_Rv3282_217_to_stop 20 27 + 6.91781 0.00115 0.0904 CAGATCGG Rv1473A_pal_2 447_down_of_accE5 20 27 + 6.91781 0.00115 0.0904 CAGATCGG Rv1473A_pal_2 antisense_Rv3282_217_to_stop 20 27 - 6.91781 0.00115 0.0904 CCGATCTG Rv1473A_pal_2 447_down_of_accE5 20 27 - 6.91781 0.00115 0.0904 CCGATCTG Rv0472c_nonpal_1 5189_up_of_Rv3186 4 14 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 1682_down_of_Rv3180c 4 14 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 43_up_of_Rv3179 4 14 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 6724_up_of_Rv3188 4 14 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 9761_down_of_Rv3190c 4 14 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 9767_down_of_Rv3190c 10 20 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 6730_up_of_Rv3188 10 20 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 1688_down_of_Rv3180c 10 20 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 49_up_of_Rv3179 10 20 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 5195_up_of_Rv3186 10 20 - 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 9760_down_of_Rv3190c 28 38 + 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 5188_up_of_Rv3186 28 38 + 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 42_up_of_Rv3179 28 38 + 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 6723_up_of_Rv3188 28 38 + 1.16346 0.00116 0.211 TACTTATAACC Rv0472c_nonpal_1 1681_down_of_Rv3180c 28 38 + 1.16346 0.00116 0.211 TACTTATAACC Rv0981_nonpal_1 antisense_frdA_787_from_start 2 29 + -10.7453 0.00116 0.247 GCCGAGGTCGTAATCCTGGAGGTAGCGG Rv2642_nonpal_1 sense_fadE7_118_to_stop 11 35 + 0.686047 0.00116 0.133 ATATCGCTGGAGTACCCGGTCATCC Rv2642_nonpal_1 antisense_fadE7_121_to_stop 3 27 - 0.686047 0.00116 0.133 ATATCGCTGGAGTACCCGGTCATCC Rv2324_nonpal_2 sense_rocA_797_to_stop 18 32 + 5.28916 0.00116 0.349 GTACCAATATCGGCC Rv2324_nonpal_2 antisense_rocA_790_to_stop 16 30 - 5.28916 0.00116 0.349 GTACCAATATCGGCC Rv0767c_pal_1 sense_Rv1461_552_from_start 18 29 + 6.88119 0.00116 0.86 GTACAGTAATCC Rv0767c_pal_1 antisense_Rv1461_559_from_start 19 30 + 6.88119 0.00116 0.86 GGATTACTGTAC Rv0767c_pal_1 sense_Rv1461_552_from_start 18 29 - 6.88119 0.00116 0.86 GGATTACTGTAC Rv0767c_pal_1 antisense_Rv1461_559_from_start 19 30 - 6.88119 0.00116 0.86 GTACAGTAATCC Rv2034_pal_1 antisense_Rv2279_293_to_stop 10 25 + 4.0875 0.00116 0.501 ATCGATGTGTACTGAG Rv2034_pal_1 sense_Rv2279_300_to_stop 23 38 + 4.0875 0.00116 0.501 CTCAGTACACATCGAT Rv2034_pal_1 antisense_Rv2279_293_to_stop 10 25 - 4.0875 0.00116 0.501 CTCAGTACACATCGAT Rv2034_pal_1 sense_Rv2279_300_to_stop 23 38 - 4.0875 0.00116 0.501 ATCGATGTGTACTGAG Rv0324_nonpal_1 antisense_gca_467_from_start 22 29 + -0.823529 0.00117 0.117 TATTGATA Rv0324_nonpal_1 sense_gca_460_from_start 19 26 - -0.823529 0.00117 0.117 TATTGATA Rv3681c_nonpal_1 sense_mmpL4_1184_to_stop 6 25 + 3.56962 0.00117 0.179 TTTGATGATTTCTGGAGACC Rv3681c_nonpal_1 antisense_mmpL4_1187_to_stop 13 32 - 3.56962 0.00117 0.179 TTTGATGATTTCTGGAGACC Rv0047c_nonpal_1 antisense_aldA_642_from_start 21 35 - 6.54688 0.00118 0.407 TCAACATCGTCACCT Rv0081_pal_1 sense_Rv1278_1158_to_stop 16 31 + 4.89333 0.00118 0.331 CTGGAGAGGTCGCTGA Rv0081_pal_1 sense_Rv1278_1158_to_stop 16 31 - 4.89333 0.00118 0.331 TCAGCGACCTCTCCAG Rv1473A_nonpal_2 antisense_cobK_311_from_start 8 15 + 1.09589 0.00118 0.119 GATGATGG Rv1473A_nonpal_2 sense_cobK_304_from_start 33 40 - 1.09589 0.00118 0.119 GATGATGG Rv2250c_nonpal_2 9754_down_of_Rv3190c 2 29 + -45.3162 0.00118 0.32 GGGCACGCCGACTCCTTGTATACTGATC Rv2250c_nonpal_2 6717_up_of_Rv3188 2 29 + -45.3162 0.00118 0.32 GGGCACGCCGACTCCTTGTATACTGATC Rv2250c_nonpal_2 5182_up_of_Rv3186 2 29 + -45.3162 0.00118 0.32 GGGCACGCCGACTCCTTGTATACTGATC Rv2250c_nonpal_2 1675_down_of_Rv3180c 2 29 + -45.3162 0.00118 0.32 GGGCACGCCGACTCCTTGTATACTGATC Rv2250c_nonpal_2 36_up_of_Rv3179 2 29 + -45.3162 0.00118 0.32 GGGCACGCCGACTCCTTGTATACTGATC Rv1049_nonpal_2 93_up_of_lpqG 9 23 - 5.52 0.00119 0.149 CATCGACGGGCCCTA Rv0023_nonpal_2 antisense_frdA_787_from_start 13 40 - -30.0096 0.00119 0.165 AAAGACGGCTACCGCTACCTCCAGGATT Rv0117_nonpal_1 sense_mptA_23_from_start 9 35 - -9.625 0.0012 0.169 AGCCAAATCAACCGCTGGAGCATGGCT Rv0117_nonpal_1 37_up_of_Rv2172c 9 35 - -9.625 0.0012 0.169 AGCCAAATCAACCGCTGGAGCATGGCT Rv0967_pal_1 antisense_Rv0370c_389_from_start 5 11 + -1.30882 0.0012 0.431 GATGAGC Rv0967_pal_1 antisense_Rv0370c_389_from_start 5 11 - -1.30882 0.0012 0.431 GCTCATC Rv0967_pal_1 sense_metA_384_from_start 16 22 + -1.30882 0.0012 0.431 GCTGATC Rv0967_pal_1 sense_metA_384_from_start 16 22 - -1.30882 0.0012 0.431 GATCAGC Rv0967_pal_1 antisense_metA_391_from_start 26 32 + -1.30882 0.0012 0.431 GATCAGC Rv0967_pal_1 antisense_metA_391_from_start 26 32 - -1.30882 0.0012 0.431 GCTGATC Rv0981_nonpal_1 sense_bioB_253_to_stop 10 37 + -10.9151 0.0012 0.247 GCCGACCTGGAGGTAATGCCGGTCGGTG Rv0324_nonpal_1 sense_pyrC_548_to_stop 21 28 + -0.882353 0.0012 0.117 TTTCGATC Rv0324_nonpal_1 antisense_pyrC_541_to_stop 20 27 - -0.882353 0.0012 0.117 TTTCGATC Rv0135c_nonpal_1 antisense_Rv1251c_1309_from_start 3 13 - 6.09375 0.0012 0.336 GCTGTACCTCG Rv3124_nonpal_1 antisense_Rv1251c_1309_from_start 3 29 - -10.2308 0.00121 0.167 TGAAGGCGCTGGAGCCGCTGTACCTCG Rv2011c_pal_1 sense_PE_PGRS57_112_from_start 2 16 + 6.86111 0.00121 0.508 CAGCCAGTGCGACCA Rv2011c_pal_1 sense_PE_PGRS54_112_from_start 2 16 + 6.86111 0.00121 0.508 CAGCCAGTGCGACCA Rv2011c_pal_1 sense_PE_PGRS54_112_from_start 2 16 - 6.86111 0.00121 0.508 TGGTCGCACTGGCTG Rv2011c_pal_1 sense_PE_PGRS57_112_from_start 2 16 - 6.86111 0.00121 0.508 TGGTCGCACTGGCTG Rv3249c_nonpal_1 antisense_aldA_642_from_start 28 38 - 6.59375 0.00122 0.47 TTGTCAACATC Rv0967_pal_2 sense_pks6_423_from_start 8 18 + 0.240506 0.00122 0.86 CGATAACAGCG Rv0967_pal_2 sense_pks6_424_from_start 8 18 + 0.240506 0.00122 0.86 CGATAACAGCG Rv0967_pal_2 sense_pks6_424_from_start 8 18 - 0.240506 0.00122 0.86 CGCTGTTATCG Rv0967_pal_2 sense_pks6_423_from_start 8 18 - 0.240506 0.00122 0.86 CGCTGTTATCG Rv0967_pal_2 antisense_pks6_430_from_start 30 40 + 0.240506 0.00122 0.86 CGCTGTTATCG Rv0967_pal_2 antisense_pks6_431_from_start 30 40 + 0.240506 0.00122 0.86 CGCTGTTATCG Rv0967_pal_2 antisense_pks6_430_from_start 30 40 - 0.240506 0.00122 0.86 CGATAACAGCG Rv0967_pal_2 antisense_pks6_431_from_start 30 40 - 0.240506 0.00122 0.86 CGATAACAGCG Rv1719_pal_1 sense_Rv2963_537_to_stop 5 19 + 6.7875 0.00122 0.484 TATCGCGGCATGGGT Rv1473A_nonpal_2 antisense_cobK_311_from_start 7 14 - 0.972603 0.00122 0.121 CATCATCG Rv0981_nonpal_1 antisense_aldA_642_from_start 7 34 + -11 0.00122 0.247 AGCGTGACTGCTGGAGGTGACGATGTTG Rv0022c_nonpal_1 4999_down_of_Rv3180c 21 35 - 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 3360_up_of_Rv3179 21 35 - 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 10041_up_of_Rv3188 21 35 - 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 13078_down_of_Rv3190c 21 35 - 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 8506_up_of_Rv3186 21 35 - 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 10034_up_of_Rv3188 13 27 + 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 3353_up_of_Rv3179 13 27 + 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 8499_up_of_Rv3186 13 27 + 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 4992_down_of_Rv3180c 13 27 + 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0022c_nonpal_1 13071_down_of_Rv3190c 13 27 + 5.71233 0.00123 0.169 GTAAACCGATTGGTG Rv0275c_nonpal_1 sense_PPE24_1577_to_stop 2 27 + -7.77885 0.00123 0.135 GCTGACGATACCCGCGGGTATCACAA Rv0275c_nonpal_1 sense_PPE24_1352_to_stop 2 27 + -7.77885 0.00123 0.135 GCTGACGATACCCGCGGGTATCACAA Rv0275c_nonpal_1 sense_PPE24_1277_to_stop 2 27 + -7.77885 0.00123 0.135 GCTGACGATACCCGCGGGTATCACAA Rv1719_pal_1 sense_Rv2963_537_to_stop 5 19 - 6.775 0.00123 0.484 ACCCATGCCGCGATA Rv0818_pal_1 sense_Rv1461_552_from_start 12 27 + 4.46875 0.00123 0.105 ATTTCGGTACAGTAAT Rv0818_pal_1 antisense_Rv1461_559_from_start 21 36 + 4.46875 0.00123 0.105 ATTACTGTACCGAAAT Rv0818_pal_1 sense_Rv1461_552_from_start 12 27 - 4.46875 0.00123 0.105 ATTACTGTACCGAAAT Rv0818_pal_1 antisense_Rv1461_559_from_start 21 36 - 4.46875 0.00123 0.105 ATTTCGGTACAGTAAT Rv0339c_nonpal_2 sense_fadE7_118_to_stop 10 30 + -6.20192 0.00123 0.7 GATATCGCTGGAGTACCCGGT Rv0339c_nonpal_2 antisense_fadE7_121_to_stop 8 28 - -6.20192 0.00123 0.7 GATATCGCTGGAGTACCCGGT Rv0602c_pal_1 sense_mptA_23_from_start 25 32 + 4.62025 0.00123 0.135 TTGATTTG Rv0602c_pal_1 37_up_of_Rv2172c 25 32 + 4.62025 0.00123 0.135 TTGATTTG Rv0602c_pal_1 sense_mptA_23_from_start 25 32 - 4.62025 0.00123 0.135 CAAATCAA Rv0602c_pal_1 37_up_of_Rv2172c 25 32 - 4.62025 0.00123 0.135 CAAATCAA Rv0302_nonpal_1 antisense_Rv0370c_389_from_start 16 30 - 5.98551 0.00123 0.213 GACCGACCCCTCCAG Rv2324_nonpal_1 antisense_Rv2279_293_to_stop 2 20 - 6.53623 0.00124 0.169 TACACATCGATCCGGTTCA Rv0691c_pal_1 sense_PPE24_1577_to_stop 2 13 + 6.81159 0.00124 0.116 GCTGACGATACC Rv0691c_pal_1 sense_PPE24_1352_to_stop 2 13 + 6.81159 0.00124 0.116 GCTGACGATACC Rv0691c_pal_1 sense_PPE24_1277_to_stop 2 13 + 6.81159 0.00124 0.116 GCTGACGATACC Rv0691c_pal_1 sense_PPE24_1577_to_stop 2 13 - 6.81159 0.00124 0.116 GGTATCGTCAGC Rv0691c_pal_1 sense_PPE24_1352_to_stop 2 13 - 6.81159 0.00124 0.116 GGTATCGTCAGC Rv0691c_pal_1 sense_PPE24_1277_to_stop 2 13 - 6.81159 0.00124 0.116 GGTATCGTCAGC Rv0678_nonpal_1 sense_Rv0674_10_to_stop 23 37 + 6.5625 0.00124 0.112 TGACATGAGTGATCT Rv2887_nonpal_1 sense_pks9_325_to_stop 17 31 + 3.175 0.00124 0.519 TCCAGATGGCTATCG Rv2374c_nonpal_1 37_up_of_Rv2172c 11 38 - -5.64423 0.00125 0.235 TGTAGCCAAATCAACCGCTGGAGCATGG Rv2374c_nonpal_1 sense_mptA_23_from_start 11 38 - -5.64423 0.00125 0.235 TGTAGCCAAATCAACCGCTGGAGCATGG Rv0691c_pal_2 sense_Rv0674_10_to_stop 1 9 + 0.974684 0.00125 0.423 GATGCAACT Rv0691c_pal_2 sense_Rv0674_10_to_stop 1 9 - 0.974684 0.00125 0.423 AGTTGCATC Rv3488_nonpal_1 sense_PPE24_1352_to_stop 17 30 - 1.57353 0.00125 0.16 CGATTGTGATACCC Rv3488_nonpal_1 sense_PPE24_1277_to_stop 17 30 - 1.57353 0.00125 0.16 CGATTGTGATACCC Rv3488_nonpal_1 sense_PPE24_1577_to_stop 17 30 - 1.57353 0.00125 0.16 CGATTGTGATACCC Rv3488_nonpal_1 antisense_PPE24_1570_to_stop 18 31 + 1.57353 0.00125 0.16 CGATTGTGATACCC Rv3488_nonpal_1 antisense_PPE24_1345_to_stop 18 31 + 1.57353 0.00125 0.16 CGATTGTGATACCC Rv3488_nonpal_1 antisense_PPE24_1270_to_stop 18 31 + 1.57353 0.00125 0.16 CGATTGTGATACCC Rv0678_nonpal_1 6724_up_of_Rv3188 9 23 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 9761_down_of_Rv3190c 9 23 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 1682_down_of_Rv3180c 9 23 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 43_up_of_Rv3179 9 23 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 5189_up_of_Rv3186 9 23 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 9767_down_of_Rv3190c 15 29 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 49_up_of_Rv3179 15 29 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 5195_up_of_Rv3186 15 29 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 1688_down_of_Rv3180c 15 29 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 6730_up_of_Rv3188 15 29 + 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 9760_down_of_Rv3190c 19 33 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 1681_down_of_Rv3180c 19 33 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 6723_up_of_Rv3188 19 33 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 42_up_of_Rv3179 19 33 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 5188_up_of_Rv3186 19 33 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 5182_up_of_Rv3186 25 39 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 36_up_of_Rv3179 25 39 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 9754_down_of_Rv3190c 25 39 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 1675_down_of_Rv3180c 25 39 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0678_nonpal_1 6717_up_of_Rv3188 25 39 - 6.54688 0.00125 0.112 TAAGTACACCGATCA Rv0324_nonpal_1 sense_mmpL4_1184_to_stop 5 12 + -0.970588 0.00126 0.117 TTTTGATG Rv0324_nonpal_1 antisense_mmpL4_1187_to_stop 26 33 - -0.970588 0.00126 0.117 TTTTGATG Rv0047c_nonpal_1 sense_fadE7_118_to_stop 3 17 - 6.40625 0.00126 0.407 GCGATATCCCGTTGC Rv0047c_nonpal_1 antisense_fadE7_121_to_stop 21 35 + 6.40625 0.00126 0.407 GCGATATCCCGTTGC Rv2359_pal_1 antisense_aldA_642_from_start 15 35 + -8.69524 0.00126 0.143 TGCTGGAGGTGACGATGTTGA Rv2359_pal_1 antisense_aldA_642_from_start 15 35 - -8.69524 0.00126 0.143 TCAACATCGTCACCTCCAGCA Rv2642_nonpal_1 sense_Rv1461_552_from_start 4 28 + 0.418605 0.00126 0.137 CAAGGAATATTTCGGTACAGTAATC Rv0275c_nonpal_1 antisense_fadE7_121_to_stop 8 33 + -7.90385 0.00127 0.135 ACCGGGTACTCCAGCGATATCCCGTT Rv0275c_nonpal_1 sense_fadE7_118_to_stop 5 30 - -7.90385 0.00127 0.135 ACCGGGTACTCCAGCGATATCCCGTT Rv3849_nonpal_2 antisense_aldA_642_from_start 11 38 + -9.24419 0.00127 0.514 TGACTGCTGGAGGTGACGATGTTGACAA Rv1956_pal_1 sense_mmpL4_1184_to_stop 2 9 + 4.27907 0.00127 0.203 GGATTTTG Rv1956_pal_1 sense_mmpL4_1184_to_stop 2 9 - 4.27907 0.00127 0.203 CAAAATCC Rv1956_pal_1 antisense_mmpL4_1187_to_stop 29 36 + 4.27907 0.00127 0.203 CAAAATCC Rv1956_pal_1 93_up_of_lpqG 33 40 + 4.27907 0.00127 0.203 CGAAATTC Rv1956_pal_1 antisense_mmpL4_1187_to_stop 29 36 - 4.27907 0.00127 0.203 GGATTTTG Rv1956_pal_1 93_up_of_lpqG 33 40 - 4.27907 0.00127 0.203 GAATTTCG Rv3849_nonpal_2 sense_PPE24_1352_to_stop 3 30 - -9.25581 0.00127 0.514 CGATTGTGATACCCGCGGGTATCGTCAG Rv3849_nonpal_2 sense_PPE24_1277_to_stop 3 30 - -9.25581 0.00127 0.514 CGATTGTGATACCCGCGGGTATCGTCAG Rv3849_nonpal_2 sense_PPE24_1577_to_stop 3 30 - -9.25581 0.00127 0.514 CGATTGTGATACCCGCGGGTATCGTCAG Rv0691c_nonpal_1 antisense_gca_467_from_start 2 15 - 5.03125 0.00127 0.249 GTCTTACGGCATGC Rv2359_nonpal_1 10041_up_of_Rv3188 1 28 - -15.6923 0.00127 0.114 GATTGGTGTACTTTGTGCTTTGACGGTA Rv2359_nonpal_1 13078_down_of_Rv3190c 1 28 - -15.6923 0.00127 0.114 GATTGGTGTACTTTGTGCTTTGACGGTA Rv2359_nonpal_1 8506_up_of_Rv3186 1 28 - -15.6923 0.00127 0.114 GATTGGTGTACTTTGTGCTTTGACGGTA Rv2359_nonpal_1 3360_up_of_Rv3179 1 28 - -15.6923 0.00127 0.114 GATTGGTGTACTTTGTGCTTTGACGGTA Rv2359_nonpal_1 4999_down_of_Rv3180c 1 28 - -15.6923 0.00127 0.114 GATTGGTGTACTTTGTGCTTTGACGGTA Rv3133c_nonpal_1 3353_up_of_Rv3179 24 38 + 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 13078_down_of_Rv3190c 10 24 - 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 8506_up_of_Rv3186 10 24 - 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 10034_up_of_Rv3188 24 38 + 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 8499_up_of_Rv3186 24 38 + 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 4999_down_of_Rv3180c 10 24 - 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 4992_down_of_Rv3180c 24 38 + 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 3360_up_of_Rv3179 10 24 - 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 13071_down_of_Rv3190c 24 38 + 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv3133c_nonpal_1 10041_up_of_Rv3188 10 24 - 6.43478 0.00128 0.208 GGTGTACTTTGTGCT Rv1994c_nonpal_1 13071_down_of_Rv3190c 24 38 + 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 8499_up_of_Rv3186 24 38 + 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 3353_up_of_Rv3179 24 38 + 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 10034_up_of_Rv3188 24 38 + 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 4992_down_of_Rv3180c 24 38 + 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 10041_up_of_Rv3188 10 24 - 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 3360_up_of_Rv3179 10 24 - 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 4999_down_of_Rv3180c 10 24 - 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 8506_up_of_Rv3186 10 24 - 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv1994c_nonpal_1 13078_down_of_Rv3190c 10 24 - 6.20548 0.00129 0.148 GGTGTACTTTGTGCT Rv0691c_nonpal_2 antisense_Rv2963_530_to_stop 3 26 - -32.7019 0.00129 0.63 CCGAATCGTTCTGGCAGAGCTTCT Rv3249c_nonpal_1 sense_bioB_253_to_stop 7 17 - 6.46875 0.00129 0.47 AGGTCGGCGAA Rv0653c_nonpal_1 1662_up_of_Rv2018 21 39 - 3.56962 0.00129 0.113 GATCTTGTATCAATTTCAC Rv2034_pal_2 antisense_Rv0370c_389_from_start 3 9 + 1.10127 0.00129 0.705 TCGATGA Rv2034_pal_2 antisense_Rv0370c_389_from_start 3 9 - 1.10127 0.00129 0.705 TCATCGA Rv0472c_nonpal_1 sense_pks6_423_from_start 11 21 + 0.75 0.00129 0.211 TAACAGCGTAT Rv0472c_nonpal_1 sense_pks6_424_from_start 11 21 + 0.75 0.00129 0.211 TAACAGCGTAT Rv0472c_nonpal_1 antisense_pks6_431_from_start 27 37 - 0.75 0.00129 0.211 TAACAGCGTAT Rv0472c_nonpal_1 antisense_pks6_430_from_start 27 37 - 0.75 0.00129 0.211 TAACAGCGTAT Rv1994c_nonpal_1 sense_mmpL4_1184_to_stop 6 20 + 6.19178 0.00129 0.148 TTTGATGATTTCTGG Rv1994c_nonpal_1 antisense_mmpL4_1187_to_stop 18 32 - 6.19178 0.00129 0.148 TTTGATGATTTCTGG Rv0653c_nonpal_1 sense_pyrC_548_to_stop 14 32 + 3.5443 0.0013 0.113 CAGGGTATTTCGATCACCG Rv0653c_nonpal_1 antisense_pyrC_541_to_stop 16 34 - 3.5443 0.0013 0.113 CAGGGTATTTCGATCACCG Rv0324_nonpal_1 antisense_pks6_431_from_start 16 23 + -1 0.0013 0.117 CCACGATC Rv0324_nonpal_1 antisense_pks6_430_from_start 16 23 + -1 0.0013 0.117 CCACGATC Rv0324_nonpal_1 sense_pks6_424_from_start 25 32 - -1 0.0013 0.117 CCACGATC Rv0324_nonpal_1 sense_pks6_423_from_start 25 32 - -1 0.0013 0.117 CCACGATC Rv1049_nonpal_2 36_up_of_Rv3179 4 18 + 5.26667 0.00131 0.149 GCACGCCGACTCCTT Rv1049_nonpal_2 1675_down_of_Rv3180c 4 18 + 5.26667 0.00131 0.149 GCACGCCGACTCCTT Rv1049_nonpal_2 6717_up_of_Rv3188 4 18 + 5.26667 0.00131 0.149 GCACGCCGACTCCTT Rv1049_nonpal_2 5182_up_of_Rv3186 4 18 + 5.26667 0.00131 0.149 GCACGCCGACTCCTT Rv1049_nonpal_2 9754_down_of_Rv3190c 4 18 + 5.26667 0.00131 0.149 GCACGCCGACTCCTT Rv0767c_nonpal_2 antisense_frdA_787_from_start 2 22 + 3.97468 0.00131 0.379 GCCGAGGTCGTAATCCTGGAG Rv1776c_nonpal_1 sense_Rv2963_537_to_stop 6 11 + 7.90411 0.00131 0.802 ATCGCG Rv1776c_nonpal_1 antisense_cobK_311_from_start 5 10 - 7.90411 0.00131 0.802 ATCGCG Rv2324_nonpal_1 10_up_of_Rv1866 21 39 - 6.43478 0.00131 0.169 GTGTCACCATATCGGTGCC Rv0081_pal_1 sense_bioB_253_to_stop 8 23 + 4.64 0.00131 0.331 TCGCCGACCTGGAGGT Rv0081_pal_1 sense_bioB_253_to_stop 8 23 - 4.64 0.00131 0.331 ACCTCCAGGTCGGCGA Rv0022c_pal_1 sense_gca_460_from_start 8 29 + 5.31081 0.00131 0.163 ACATGCTGGCGTATCAATATCA Rv0022c_pal_1 antisense_gca_467_from_start 19 40 + 5.31081 0.00131 0.163 TGATATTGATACGCCAGCATGT Rv0022c_pal_1 sense_gca_460_from_start 8 29 - 5.31081 0.00131 0.163 TGATATTGATACGCCAGCATGT Rv0022c_pal_1 antisense_gca_467_from_start 19 40 - 5.31081 0.00131 0.163 ACATGCTGGCGTATCAATATCA Rv3830c_nonpal_1 antisense_mmpL4_1187_to_stop 25 39 + 4.72973 0.00131 0.576 TCATCAAAATCCGCG Rv1049_nonpal_2 antisense_Rv1251c_1309_from_start 23 37 - 5.24 0.00132 0.149 GTTCAGCTTGAAGGC Rv3574_nonpal_1 sense_mmpL4_1184_to_stop 18 32 - 4.36765 0.00132 0.255 TCGAATTGGTCTCCA Rv3574_nonpal_1 antisense_mmpL4_1187_to_stop 6 20 + 4.36765 0.00132 0.255 TCGAATTGGTCTCCA Rv0023_nonpal_2 sense_Rv0674_10_to_stop 12 39 - -30.6154 0.00133 0.173 CCAGATCACTCATGTCACCTCCAGGAGT Rv0576_nonpal_1 antisense_Rv2279_293_to_stop 15 40 + 3.84091 0.00133 0.0971 TGTGTACTGAGATCCCCTATCCGTAT Rv0576_nonpal_1 sense_Rv2279_300_to_stop 8 33 - 3.84091 0.00133 0.0971 TGTGTACTGAGATCCCCTATCCGTAT Rv1219c_nonpal_1 10_up_of_Rv1866 9 23 - 4.06329 0.00133 0.599 GCCTCCAGCAGAACA Rv0653c_nonpal_1 sense_rocA_797_to_stop 18 36 + 3.48101 0.00133 0.113 GTACCAATATCGGCCGCTA Rv0653c_nonpal_1 antisense_rocA_790_to_stop 12 30 - 3.48101 0.00133 0.113 GTACCAATATCGGCCGCTA Rv2250c_nonpal_1 sense_accA1_598_from_start 4 13 - 6.62319 0.00133 0.274 TAGCGTATCG Rv2250c_nonpal_1 antisense_accA1_595_from_start 25 34 + 6.62319 0.00133 0.274 TAGCGTATCG Rv0047c_nonpal_1 sense_rocA_797_to_stop 21 35 + 6.28125 0.00133 0.407 CCAATATCGGCCGCT Rv0047c_nonpal_1 antisense_rocA_790_to_stop 13 27 - 6.28125 0.00133 0.407 CCAATATCGGCCGCT Rv0691c_nonpal_2 6730_up_of_Rv3188 4 27 - -32.9808 0.00133 0.63 ATCGGTGTACTTATAACCGACACT Rv0691c_nonpal_2 5195_up_of_Rv3186 4 27 - -32.9808 0.00133 0.63 ATCGGTGTACTTATAACCGACACT Rv0691c_nonpal_2 49_up_of_Rv3179 4 27 - -32.9808 0.00133 0.63 ATCGGTGTACTTATAACCGACACT Rv0691c_nonpal_2 1688_down_of_Rv3180c 4 27 - -32.9808 0.00133 0.63 ATCGGTGTACTTATAACCGACACT Rv0691c_nonpal_2 9767_down_of_Rv3190c 4 27 - -32.9808 0.00133 0.63 ATCGGTGTACTTATAACCGACACT Rv0302_nonpal_1 sense_Rv1461_552_from_start 2 16 - 5.82609 0.00134 0.222 GAAATATTCCTTGAA Rv1473A_nonpal_2 sense_mmpL4_1184_to_stop 8 15 - 0.561644 0.00134 0.128 AATCATCA Rv1473A_nonpal_2 antisense_mmpL4_1187_to_stop 23 30 + 0.561644 0.00134 0.128 AATCATCA Rv0275c_nonpal_1 sense_rocA_797_to_stop 3 28 - -8.16346 0.00135 0.135 GATATTGGTACCCACCCACTGCCATA Rv0158_nonpal_1 antisense_aldA_642_from_start 3 27 - -6.77358 0.00135 0.29 GTCACCTCCAGCAGTCACGCTTTGG Rv0023_nonpal_1 5195_up_of_Rv3186 1 21 + 5.91549 0.00135 0.113 TACAGTGTCGGTTATAAGTAC Rv0023_nonpal_1 1688_down_of_Rv3180c 1 21 + 5.91549 0.00135 0.113 TACAGTGTCGGTTATAAGTAC Rv0023_nonpal_1 49_up_of_Rv3179 1 21 + 5.91549 0.00135 0.113 TACAGTGTCGGTTATAAGTAC Rv0023_nonpal_1 9767_down_of_Rv3190c 1 21 + 5.91549 0.00135 0.113 TACAGTGTCGGTTATAAGTAC Rv0023_nonpal_1 6730_up_of_Rv3188 1 21 + 5.91549 0.00135 0.113 TACAGTGTCGGTTATAAGTAC Rv1359_nonpal_1 sense_rocA_797_to_stop 1 28 + -7.79808 0.00135 0.133 CCTATGGCAGTGGGTGGGTACCAATATC Rv2250c_nonpal_1 antisense_aldA_642_from_start 22 31 - 6.5942 0.00135 0.274 CATCGTCACC Rv2250c_nonpal_1 10_up_of_Rv1866 31 40 + 6.5942 0.00135 0.274 TGGTGACACG Rv1816_nonpal_1 sense_Rv1278_1158_to_stop 20 36 + 5.89231 0.00135 0.191 AGAGGTCGCTGACCTAG Rv0494_pal_1 antisense_fadE7_121_to_stop 3 19 + 5.67143 0.00135 1 GGATGACCGGGTACTCC Rv0494_pal_1 antisense_fadE7_121_to_stop 3 19 - 5.67143 0.00135 1 GGAGTACCCGGTCATCC Rv0494_pal_1 sense_fadE7_118_to_stop 19 35 + 5.67143 0.00135 1 GGAGTACCCGGTCATCC Rv0494_pal_1 sense_fadE7_118_to_stop 19 35 - 5.67143 0.00135 1 GGATGACCGGGTACTCC Rv2788_nonpal_2 antisense_aldA_642_from_start 9 36 + -15.9767 0.00135 0.224 CGTGACTGCTGGAGGTGACGATGTTGAC Rv2011c_pal_1 sense_bioB_253_to_stop 8 22 + 6.66667 0.00136 0.508 TCGCCGACCTGGAGG Rv2011c_pal_1 sense_bioB_253_to_stop 8 22 - 6.66667 0.00136 0.508 CCTCCAGGTCGGCGA Rv0023_pal_2 93_up_of_lpqG 6 21 + 5.97403 0.00136 0.292 TTGTAGGGCCCGTCGA Rv0023_pal_2 93_up_of_lpqG 6 21 - 5.97403 0.00136 0.292 TCGACGGGCCCTACAA Rv0691c_pal_1 sense_Rv1461_552_from_start 11 22 + 6.62319 0.00136 0.116 TATTTCGGTACA Rv0691c_pal_1 sense_Rv1461_552_from_start 11 22 - 6.62319 0.00136 0.116 TGTACCGAAATA Rv0691c_pal_1 antisense_Rv1461_559_from_start 26 37 + 6.62319 0.00136 0.116 TGTACCGAAATA Rv0691c_pal_1 antisense_Rv1461_559_from_start 26 37 - 6.62319 0.00136 0.116 TATTTCGGTACA Rv0081_pal_1 sense_mmpL4_1184_to_stop 7 22 + 4.54667 0.00136 0.331 TTGATGATTTCTGGAG Rv0081_pal_1 antisense_mmpL4_1187_to_stop 16 31 + 4.54667 0.00136 0.331 CTCCAGAAATCATCAA Rv0081_pal_1 sense_mmpL4_1184_to_stop 7 22 - 4.54667 0.00136 0.331 CTCCAGAAATCATCAA Rv0081_pal_1 antisense_mmpL4_1187_to_stop 16 31 - 4.54667 0.00136 0.331 TTGATGATTTCTGGAG Rv1473A_pal_1 1662_up_of_Rv2018 29 40 + 5.04286 0.00136 0.378 GATACAAGATCG Rv1473A_pal_1 1662_up_of_Rv2018 29 40 - 5.04286 0.00136 0.378 CGATCTTGTATC Rv0273c_nonpal_1 antisense_aldA_642_from_start 16 40 - 4.9875 0.00136 0.413 CGTTGTCAACATCGTCACCTCCAGC Rv0602c_pal_1 sense_Rv0674_10_to_stop 24 31 + 4.05063 0.00137 0.135 GACATGAG Rv0602c_pal_1 sense_Rv0674_10_to_stop 24 31 - 4.05063 0.00137 0.135 CTCATGTC Rv0678_nonpal_1 antisense_frdA_787_from_start 10 24 + 6.39062 0.00137 0.112 CGTAATCCTGGAGGT Rv3249c_pal_1 antisense_aldA_642_from_start 22 33 + 6.69231 0.00137 0.254 GGTGACGATGTT Rv3249c_pal_1 antisense_aldA_642_from_start 22 33 - 6.69231 0.00137 0.254 AACATCGTCACC Rv1473A_nonpal_1 sense_metA_384_from_start 3 16 - -0.534247 0.00137 0.335 CGGAAATCTTGAGC Rv3488_nonpal_2 10034_up_of_Rv3188 11 38 + -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 8499_up_of_Rv3186 11 38 + -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 13071_down_of_Rv3190c 11 38 + -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 3353_up_of_Rv3179 11 38 + -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 4992_down_of_Rv3180c 11 38 + -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 13078_down_of_Rv3190c 10 37 - -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 10041_up_of_Rv3188 10 37 - -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 3360_up_of_Rv3179 10 37 - -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 8506_up_of_Rv3186 10 37 - -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv3488_nonpal_2 4999_down_of_Rv3180c 10 37 - -26.3936 0.00137 0.131 CAGTAAACCGATTGGTGTACTTTGTGCT Rv0691c_nonpal_1 9760_down_of_Rv3190c 23 36 - 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 6723_up_of_Rv3188 23 36 - 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 1681_down_of_Rv3180c 23 36 - 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 5188_up_of_Rv3186 23 36 - 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 42_up_of_Rv3179 23 36 - 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 5189_up_of_Rv3186 6 19 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 43_up_of_Rv3179 6 19 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 6724_up_of_Rv3188 6 19 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 1682_down_of_Rv3180c 6 19 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 9761_down_of_Rv3190c 6 19 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 6730_up_of_Rv3188 12 25 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 5195_up_of_Rv3186 12 25 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 1688_down_of_Rv3180c 12 25 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 49_up_of_Rv3179 12 25 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv0691c_nonpal_1 9767_down_of_Rv3190c 12 25 + 4.79688 0.00137 0.249 TTATAAGTACACCG Rv3249c_pal_2 sense_accA1_598_from_start 2 16 + 4.51351 0.00138 0.136 GACGATACGCTATTC Rv3249c_pal_2 sense_accA1_598_from_start 2 16 - 4.51351 0.00138 0.136 GAATAGCGTATCGTC Rv3249c_pal_2 antisense_accA1_595_from_start 22 36 + 4.51351 0.00138 0.136 GAATAGCGTATCGTC Rv3249c_pal_2 antisense_accA1_595_from_start 22 36 - 4.51351 0.00138 0.136 GACGATACGCTATTC Rv3488_pal_1 10_up_of_Rv1866 26 33 + 2.83824 0.00138 0.196 CGATATGG Rv3488_pal_1 10_up_of_Rv1866 26 33 - 2.83824 0.00138 0.196 CCATATCG Rv0757_pal_1 sense_pks6_424_from_start 3 16 + 6.35443 0.00138 0.719 GTGTGCGATAACAG Rv0757_pal_1 sense_pks6_423_from_start 3 16 + 6.35443 0.00138 0.719 GTGTGCGATAACAG Rv0757_pal_1 sense_pks6_423_from_start 3 16 - 6.35443 0.00138 0.719 CTGTTATCGCACAC Rv0757_pal_1 sense_pks6_424_from_start 3 16 - 6.35443 0.00138 0.719 CTGTTATCGCACAC Rv3681c_nonpal_1 42_up_of_Rv3179 10 29 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 1681_down_of_Rv3180c 10 29 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 6723_up_of_Rv3188 10 29 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 9760_down_of_Rv3190c 10 29 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 5188_up_of_Rv3186 10 29 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 9754_down_of_Rv3190c 16 35 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 1675_down_of_Rv3180c 16 35 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 6717_up_of_Rv3188 16 35 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 5182_up_of_Rv3186 16 35 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 36_up_of_Rv3179 16 35 + 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 1682_down_of_Rv3180c 13 32 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 43_up_of_Rv3179 13 32 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 6724_up_of_Rv3188 13 32 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 9761_down_of_Rv3190c 13 32 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 5189_up_of_Rv3186 13 32 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 6730_up_of_Rv3188 19 38 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 5195_up_of_Rv3186 19 38 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 1688_down_of_Rv3180c 19 38 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 9767_down_of_Rv3190c 19 38 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3681c_nonpal_1 49_up_of_Rv3179 19 38 - 3.08861 0.00138 0.179 CTTGTATACTGATCGGTGTA Rv3488_nonpal_2 antisense_Rv2963_530_to_stop 5 32 - -26.4574 0.00139 0.131 GGGTACCCGAATCGTTCTGGCAGAGCTT Rv1473A_nonpal_1 antisense_Rv3282_217_to_stop 16 29 - -0.589041 0.00139 0.335 CTCCGATCTGGAGG Rv1473A_nonpal_1 447_down_of_accE5 16 29 - -0.589041 0.00139 0.335 CTCCGATCTGGAGG Rv1994c_nonpal_1 sense_Rv0674_10_to_stop 2 16 - 6.0411 0.00139 0.148 GGAGTTGAGTTGCAT Rv1956_nonpal_1 sense_pyrC_548_to_stop 5 25 + 3.05814 0.00139 0.256 GCTAAGGACCAGGGTATTTCG Rv2788_pal_1 93_up_of_lpqG 3 24 + 1.68889 0.00139 0.164 GCATTGTAGGGCCCGTCGATGC Rv2788_pal_1 93_up_of_lpqG 3 24 - 1.68889 0.00139 0.164 GCATCGACGGGCCCTACAATGC Rv1359_nonpal_1 13071_down_of_Rv3190c 13 40 + -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 3353_up_of_Rv3179 13 40 + -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 10034_up_of_Rv3188 13 40 + -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 8499_up_of_Rv3186 13 40 + -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 4992_down_of_Rv3180c 13 40 + -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 3360_up_of_Rv3179 8 35 - -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 8506_up_of_Rv3186 8 35 - -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 13078_down_of_Rv3190c 8 35 - -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 10041_up_of_Rv3188 8 35 - -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv1359_nonpal_1 4999_down_of_Rv3180c 8 35 - -7.94231 0.0014 0.133 GTAAACCGATTGGTGTACTTTGTGCTTT Rv0494_nonpal_2 sense_Rv1278_1158_to_stop 10 24 + -2.28421 0.0014 1 TGGCGGCTGGAGAGG Rv2009_nonpal_1 antisense_fadE7_121_to_stop 9 29 + 2.88608 0.0014 0.279 CCGGGTACTCCAGCGATATCC Rv2009_nonpal_1 sense_fadE7_118_to_stop 9 29 - 2.88608 0.0014 0.279 CCGGGTACTCCAGCGATATCC Rv0981_nonpal_1 sense_Rv1278_1158_to_stop 3 30 + -11.6604 0.00141 0.263 GATGCGCTGGCGGCTGGAGAGGTCGCTG Rv1994c_nonpal_1 880_up_of_treZ 24 38 - 6.0137 0.00141 0.148 GGCGAAGAGTGGGGG Rv1994c_nonpal_1 antisense_treZ_470_to_stop 24 38 - 6.0137 0.00141 0.148 GGCGAAGAGTGGGGG Rv1994c_nonpal_1 antisense_treY_785_to_stop 24 38 - 6.0137 0.00141 0.148 GGCGAAGAGTGGGGG Rv0653c_nonpal_1 43_up_of_Rv3179 5 23 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 6724_up_of_Rv3188 5 23 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 1682_down_of_Rv3180c 5 23 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 5189_up_of_Rv3186 5 23 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 9761_down_of_Rv3190c 5 23 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 1688_down_of_Rv3180c 11 29 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 49_up_of_Rv3179 11 29 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 9767_down_of_Rv3190c 11 29 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 5195_up_of_Rv3186 11 29 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 6730_up_of_Rv3188 11 29 + 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 6723_up_of_Rv3188 19 37 - 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 42_up_of_Rv3179 19 37 - 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 5188_up_of_Rv3186 19 37 - 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 9760_down_of_Rv3190c 19 37 - 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv0653c_nonpal_1 1681_down_of_Rv3180c 19 37 - 3.3038 0.00141 0.113 GTTATAAGTACACCGATCA Rv2887_nonpal_1 sense_Rv1461_475_from_start 24 38 + 2.8 0.00141 0.519 TCAAGGAGTCATATT Rv0135c_nonpal_1 sense_gca_460_from_start 15 25 + 5.32812 0.00142 0.336 GGCGTATCAAT Rv0135c_nonpal_1 antisense_gca_467_from_start 23 33 - 5.32812 0.00142 0.336 GGCGTATCAAT Rv0275c_nonpal_1 sense_mmpL4_1184_to_stop 3 28 + -8.38462 0.00142 0.135 GATTTTGATGATTTCTGGAGACCAAT Rv0275c_nonpal_1 antisense_mmpL4_1187_to_stop 10 35 - -8.38462 0.00142 0.135 GATTTTGATGATTTCTGGAGACCAAT Rv3246c_nonpal_1 antisense_treZ_470_to_stop 5 24 + 3.98765 0.00142 0.173 ACTGAAACGGGCTGGAGGCC Rv3246c_nonpal_1 antisense_treY_785_to_stop 5 24 + 3.98765 0.00142 0.173 ACTGAAACGGGCTGGAGGCC Rv3246c_nonpal_1 880_up_of_treZ 5 24 + 3.98765 0.00142 0.173 ACTGAAACGGGCTGGAGGCC Rv3246c_nonpal_1 877_up_of_treZ 14 33 - 3.98765 0.00142 0.173 ACTGAAACGGGCTGGAGGCC Rv3246c_nonpal_1 sense_treZ_467_to_stop 14 33 - 3.98765 0.00142 0.173 ACTGAAACGGGCTGGAGGCC Rv0653c_pal_1 antisense_frdA_787_from_start 3 26 + 4.63291 0.00142 0.129 CCGAGGTCGTAATCCTGGAGGTAG Rv0653c_pal_1 antisense_frdA_787_from_start 3 26 - 4.63291 0.00142 0.129 CTACCTCCAGGATTACGACCTCGG Rv1404_nonpal_1 sense_accA1_598_from_start 8 33 + 3.5875 0.00142 0.0602 ACGCTATTCCTGGAGCGGTTTGTGTT Rv1404_nonpal_1 antisense_accA1_595_from_start 5 30 - 3.5875 0.00142 0.0602 ACGCTATTCCTGGAGCGGTTTGTGTT Rv3830c_pal_1 sense_Rv0674_10_to_stop 22 37 + 5.32468 0.00143 1 GTGACATGAGTGATCT Rv3830c_pal_1 sense_Rv0674_10_to_stop 22 37 - 5.32468 0.00143 1 AGATCACTCATGTCAC Rv0195_nonpal_1 sense_Rv2038c_183_from_start 8 21 + 2.38298 0.00143 1 GGACTGTGGGCGTA Rv1219c_nonpal_2 sense_bioB_253_to_stop 5 32 + -36.0513 0.00143 0.302 CGTTCGCCGACCTGGAGGTAATGCCGGT Rv0302_nonpal_2 antisense_Rv1251c_1309_from_start 13 23 + 5.20513 0.00143 1 CGGCTCCAGCG Rv0135c_nonpal_1 447_down_of_accE5 7 17 - 5.23438 0.00144 0.336 GGCTTACCTGG Rv0135c_nonpal_1 antisense_Rv3282_217_to_stop 7 17 - 5.23438 0.00144 0.336 GGCTTACCTGG Rv0602c_pal_1 sense_Rv1461_475_from_start 1 8 + 3.86076 0.00144 0.135 CAGATCAG Rv0602c_pal_1 sense_Rv1461_475_from_start 1 8 - 3.86076 0.00144 0.135 CTGATCTG Rv0602c_pal_1 antisense_Rv1461_472_from_start 30 37 + 3.86076 0.00144 0.135 CTGATCTG Rv0602c_pal_1 antisense_Rv1461_472_from_start 30 37 - 3.86076 0.00144 0.135 CAGATCAG Rv1675c_pal_1 sense_Rv0674_10_to_stop 12 27 + -0.952381 0.00144 1 ACTCCTGGAGGTGACA Rv1675c_pal_1 sense_Rv0674_10_to_stop 12 27 - -0.952381 0.00144 1 TGTCACCTCCAGGAGT Rv3488_pal_1 sense_Rv1461_552_from_start 8 15 + 2.64706 0.00144 0.196 GAATATTT Rv3488_pal_1 sense_Rv1461_552_from_start 8 15 - 2.64706 0.00144 0.196 AAATATTC Rv3488_pal_1 antisense_Rv1461_559_from_start 33 40 + 2.64706 0.00144 0.196 AAATATTC Rv3488_pal_1 antisense_Rv1461_559_from_start 33 40 - 2.64706 0.00144 0.196 GAATATTT Rv2324_nonpal_1 sense_metA_384_from_start 2 20 + 6.26087 0.00144 0.169 GGCTCAAGATTTCCGCTGA Rv1255c_nonpal_1 sense_mmpL4_1184_to_stop 20 39 + 1.25287 0.00145 0.391 GAGACCAATTCGAAGCTATT Rv3557c_nonpal_1 sense_mptA_23_from_start 15 34 - -10.5096 0.00145 0.286 GCCAAATCAACCGCTGGAGC Rv3557c_nonpal_1 37_up_of_Rv2172c 15 34 - -10.5096 0.00145 0.286 GCCAAATCAACCGCTGGAGC Rv0275c_nonpal_1 antisense_Rv2279_293_to_stop 4 29 - -8.49038 0.00145 0.135 GGATCTCAGTACACATCGATCCGGTT Rv0302_pal_1 antisense_Rv2279_293_to_stop 9 20 + 6.42647 0.00146 0.249 GATCGATGTGTA Rv0302_pal_1 antisense_Rv2279_293_to_stop 9 20 - 6.42647 0.00146 0.249 TACACATCGATC Rv0302_pal_1 sense_Rv2279_300_to_stop 28 39 + 6.42647 0.00146 0.249 TACACATCGATC Rv0302_pal_1 sense_Rv2279_300_to_stop 28 39 - 6.42647 0.00146 0.249 GATCGATGTGTA Rv3488_nonpal_2 antisense_cobK_311_from_start 2 29 - -26.7553 0.00146 0.131 GGATCCCGGTACCGCCATCATCGCGGTA Rv0494_nonpal_2 antisense_Rv1461_416_from_start 10 24 - -2.45263 0.00146 1 AGCTGGAGTAGCCGC Rv1473A_pal_2 sense_mmpL4_1184_to_stop 7 14 + 1.24658 0.00146 0.108 TTGATGAT Rv1473A_pal_2 sense_mmpL4_1184_to_stop 7 14 - 1.24658 0.00146 0.108 ATCATCAA Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 24 31 + 1.24658 0.00146 0.108 ATCATCAA Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 24 31 - 1.24658 0.00146 0.108 TTGATGAT Rv0273c_nonpal_2 antisense_Rv2279_293_to_stop 1 26 - -37.406 0.00146 0.354 TCTCAGTACACATCGATCCGGTTCAG Rv0273c_nonpal_2 sense_gca_460_from_start 2 27 + -37.406 0.00146 0.354 CCACCGACATGCTGGCGTATCAATAT Rv0273c_nonpal_2 sense_Rv2279_300_to_stop 3 28 + -37.406 0.00146 0.354 CCACCATACGGATAGGGGATCTCAGT Rv0981_nonpal_2 antisense_pyrC_541_to_stop 17 37 + 0.494737 0.00146 0.415 GGTGATCGAAATACCCTGGTC Rv0981_nonpal_2 sense_pyrC_548_to_stop 11 31 - 0.494737 0.00146 0.415 GGTGATCGAAATACCCTGGTC Rv3830c_pal_2 sense_bioB_253_to_stop 7 15 + 7.14286 0.00146 1 TTCGCCGAC Rv3830c_pal_2 sense_bioB_253_to_stop 7 15 - 7.14286 0.00146 1 GTCGGCGAA Rv0678_nonpal_1 4999_down_of_Rv3180c 8 22 - 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 8506_up_of_Rv3186 8 22 - 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 13078_down_of_Rv3190c 8 22 - 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 10041_up_of_Rv3188 8 22 - 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 3360_up_of_Rv3179 8 22 - 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 3353_up_of_Rv3179 26 40 + 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 8499_up_of_Rv3186 26 40 + 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 4992_down_of_Rv3180c 26 40 + 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 10034_up_of_Rv3188 26 40 + 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv0678_nonpal_1 13071_down_of_Rv3190c 26 40 + 6.26562 0.00147 0.112 TGTACTTTGTGCTTT Rv1404_nonpal_1 sense_Rv2279_300_to_stop 2 27 - 3.5 0.00147 0.0602 CTGAGATCCCCTATCCGTATGGTGGA Rv2011c_nonpal_1 7_up_of_Rv1049 9 27 + 6.3 0.00148 0.652 GCCCATTACTCCAGACTCG Rv2011c_nonpal_1 4_up_of_Rv1049 11 29 - 6.3 0.00148 0.652 GCCCATTACTCCAGACTCG Rv2034_nonpal_1 antisense_pks6_431_from_start 7 17 - 6.79412 0.00148 0.359 GGGTTCACGAA Rv2034_nonpal_1 antisense_pks6_430_from_start 7 17 - 6.79412 0.00148 0.359 GGGTTCACGAA Rv3849_nonpal_1 sense_bioB_253_to_stop 3 14 + 4.38356 0.00148 0.549 CCCGTTCGCCGA Rv1828_nonpal_1 antisense_aldA_642_from_start 12 35 + -4.81915 0.00148 0.291 GACTGCTGGAGGTGACGATGTTGA Rv1049_nonpal_2 10_up_of_Rv1866 20 34 + 4.90667 0.00149 0.164 AGGCACCGATATGGT Rv0339c_nonpal_2 antisense_rocA_790_to_stop 17 37 + -7 0.00149 0.7 GCCGATATTGGTACCCACCCA Rv0339c_nonpal_2 sense_rocA_797_to_stop 11 31 - -7 0.00149 0.7 GCCGATATTGGTACCCACCCA Rv1990c_nonpal_1 antisense_aldA_642_from_start 18 28 - 6.44615 0.00149 1 CGTCACCTCCA Rv0818_nonpal_1 sense_PPE24_1277_to_stop 8 28 + -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv0818_nonpal_1 sense_PPE24_1577_to_stop 8 28 + -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv0818_nonpal_1 sense_PPE24_1352_to_stop 8 28 + -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv0818_nonpal_1 antisense_PPE24_1345_to_stop 20 40 - -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv0818_nonpal_1 antisense_PPE24_1270_to_stop 20 40 - -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv0818_nonpal_1 antisense_PPE24_1570_to_stop 20 40 - -0.797872 0.00149 0.317 GATACCCGCGGGTATCACAAT Rv1404_nonpal_1 sense_gca_460_from_start 1 26 - 3.4625 0.00149 0.0602 TATTGATACGCCAGCATGTCGGTGGC Rv1674c_nonpal_1 3360_up_of_Rv3179 21 38 + -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 8506_up_of_Rv3186 21 38 + -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 13078_down_of_Rv3190c 21 38 + -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 4999_down_of_Rv3180c 21 38 + -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 10041_up_of_Rv3188 21 38 + -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 3353_up_of_Rv3179 10 27 - -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 13071_down_of_Rv3190c 10 27 - -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 10034_up_of_Rv3188 10 27 - -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 8499_up_of_Rv3186 10 27 - -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv1674c_nonpal_1 4992_down_of_Rv3180c 10 27 - -3.43617 0.0015 0.357 CACCAATCGGTTTACTGT Rv0494_pal_1 antisense_Rv1251c_1309_from_start 6 22 + 5.45714 0.0015 1 GGTACAGCGGCTCCAGC Rv0494_pal_1 antisense_Rv1251c_1309_from_start 6 22 - 5.45714 0.0015 1 GCTGGAGCCGCTGTACC Rv0653c_nonpal_1 6730_up_of_Rv3188 3 21 - 3.11392 0.00151 0.113 GTACTTATAACCGACACTG Rv0653c_nonpal_1 5195_up_of_Rv3186 3 21 - 3.11392 0.00151 0.113 GTACTTATAACCGACACTG Rv0653c_nonpal_1 1688_down_of_Rv3180c 3 21 - 3.11392 0.00151 0.113 GTACTTATAACCGACACTG Rv0653c_nonpal_1 9767_down_of_Rv3190c 3 21 - 3.11392 0.00151 0.113 GTACTTATAACCGACACTG Rv0653c_nonpal_1 49_up_of_Rv3179 3 21 - 3.11392 0.00151 0.113 GTACTTATAACCGACACTG Rv2324_pal_1 sense_gca_460_from_start 5 19 + 5.27273 0.00151 0.368 CCGACATGCTGGCGT Rv2324_pal_1 sense_gca_460_from_start 5 19 - 5.27273 0.00151 0.368 ACGCCAGCATGTCGG Rv3488_nonpal_2 sense_pks6_423_from_start 8 35 + -26.9362 0.00151 0.131 CGATAACAGCGTATCCAGATCGTGGGTT Rv3488_nonpal_2 sense_pks6_424_from_start 8 35 + -26.9362 0.00151 0.131 CGATAACAGCGTATCCAGATCGTGGGTT Rv3488_nonpal_2 antisense_pks6_431_from_start 13 40 - -26.9362 0.00151 0.131 CGATAACAGCGTATCCAGATCGTGGGTT Rv3488_nonpal_2 antisense_pks6_430_from_start 13 40 - -26.9362 0.00151 0.131 CGATAACAGCGTATCCAGATCGTGGGTT Rv0047c_nonpal_1 sense_gca_460_from_start 21 35 + 6 0.00151 0.407 TCAATATCACAAGTC Rv0047c_nonpal_1 antisense_gca_467_from_start 13 27 - 6 0.00151 0.407 TCAATATCACAAGTC Rv0757_nonpal_1 sense_Rv2963_537_to_stop 20 40 + 3.74684 0.00151 0.595 ACCCGAATCGTTCTGGCAGAG Rv0757_nonpal_1 antisense_Rv2963_530_to_stop 8 28 - 3.74684 0.00151 0.595 ACCCGAATCGTTCTGGCAGAG Rv2324_nonpal_1 13071_down_of_Rv3190c 11 29 + 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 8499_up_of_Rv3186 11 29 + 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 4992_down_of_Rv3180c 11 29 + 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 10034_up_of_Rv3188 11 29 + 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 3353_up_of_Rv3179 11 29 + 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 8506_up_of_Rv3186 19 37 - 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 3360_up_of_Rv3179 19 37 - 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 10041_up_of_Rv3188 19 37 - 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 4999_down_of_Rv3180c 19 37 - 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv2324_nonpal_1 13078_down_of_Rv3190c 19 37 - 6.17391 0.00151 0.169 CAGTAAACCGATTGGTGTA Rv3736_pal_1 sense_Rv1461_552_from_start 3 17 + 6.18571 0.00152 0.784 TCAAGGAATATTTCG Rv3736_pal_1 sense_Rv1461_552_from_start 3 17 - 6.18571 0.00152 0.784 CGAAATATTCCTTGA Rv3855_nonpal_1 sense_pks9_325_to_stop 6 31 - -10.4808 0.00152 1 CGATAGCCATCTGGAGACGATTGCGT Rv0653c_nonpal_1 93_up_of_lpqG 20 38 + 3.08861 0.00152 0.113 GATGCCAGTACCCCGAAAT Rv0576_nonpal_1 42_up_of_Rv3179 15 40 + 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 9760_down_of_Rv3190c 15 40 + 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 6723_up_of_Rv3188 15 40 + 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 1681_down_of_Rv3180c 15 40 + 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 5188_up_of_Rv3186 15 40 + 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 43_up_of_Rv3179 2 27 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 1682_down_of_Rv3180c 2 27 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 6724_up_of_Rv3188 2 27 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 5189_up_of_Rv3186 2 27 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 9761_down_of_Rv3190c 2 27 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 5195_up_of_Rv3186 8 33 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 1688_down_of_Rv3180c 8 33 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 49_up_of_Rv3179 8 33 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 6730_up_of_Rv3188 8 33 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0576_nonpal_1 9767_down_of_Rv3190c 8 33 - 3.46591 0.00152 0.0971 ATACTGATCGGTGTACTTATAACCGA Rv0275c_nonpal_1 sense_pks6_423_from_start 5 30 - -8.72115 0.00153 0.135 ACGATCTGGATACGCTGTTATCGCAC Rv0275c_nonpal_1 sense_pks6_424_from_start 5 30 - -8.72115 0.00153 0.135 ACGATCTGGATACGCTGTTATCGCAC Rv0678_nonpal_1 antisense_PPE24_1570_to_stop 9 23 + 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv0678_nonpal_1 antisense_PPE24_1345_to_stop 9 23 + 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv0678_nonpal_1 antisense_PPE24_1270_to_stop 9 23 + 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv0678_nonpal_1 sense_PPE24_1352_to_stop 25 39 - 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv0678_nonpal_1 sense_PPE24_1577_to_stop 25 39 - 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv0678_nonpal_1 sense_PPE24_1277_to_stop 25 39 - 6.1875 0.00153 0.112 TAAAGCCACCGATTG Rv3066_nonpal_1 7_up_of_Rv1049 17 36 - 3.09195 0.00153 0.874 GTAGCTACACGAGTCTGGAG Rv3066_nonpal_1 4_up_of_Rv1049 2 21 + 3.09195 0.00153 0.874 GTAGCTACACGAGTCTGGAG Rv1956_nonpal_1 1662_up_of_Rv2018 5 25 - 2.76744 0.00153 0.256 TTCACTGGAGAAGGCCGATTC Rv3849_nonpal_1 sense_fadE7_118_to_stop 9 20 + 4.24658 0.00153 0.549 GGATATCGCTGG Rv3849_nonpal_1 antisense_fadE7_121_to_stop 18 29 - 4.24658 0.00153 0.549 GGATATCGCTGG Rv0081_nonpal_1 antisense_PPE24_1345_to_stop 13 27 + 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv0081_nonpal_1 antisense_PPE24_1270_to_stop 13 27 + 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv0081_nonpal_1 antisense_PPE24_1570_to_stop 13 27 + 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv0081_nonpal_1 sense_PPE24_1352_to_stop 21 35 - 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv0081_nonpal_1 sense_PPE24_1577_to_stop 21 35 - 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv0081_nonpal_1 sense_PPE24_1277_to_stop 21 35 - 3.12 0.00154 0.274 GCCACCGATTGTGAT Rv2359_nonpal_1 antisense_treY_785_to_stop 3 30 + -16.6058 0.00154 0.114 GAACTGAAACGGGCTGGAGGCCCCCCAC Rv2359_nonpal_1 880_up_of_treZ 3 30 + -16.6058 0.00154 0.114 GAACTGAAACGGGCTGGAGGCCCCCCAC Rv2359_nonpal_1 antisense_treZ_470_to_stop 3 30 + -16.6058 0.00154 0.114 GAACTGAAACGGGCTGGAGGCCCCCCAC Rv2359_nonpal_1 877_up_of_treZ 8 35 - -16.6058 0.00154 0.114 GAACTGAAACGGGCTGGAGGCCCCCCAC Rv2359_nonpal_1 sense_treZ_467_to_stop 8 35 - -16.6058 0.00154 0.114 GAACTGAAACGGGCTGGAGGCCCCCCAC Rv2011c_pal_1 antisense_gca_467_from_start 16 30 + 6.44444 0.00154 0.508 TTGTGATATTGATAC Rv2011c_pal_1 sense_gca_460_from_start 18 32 + 6.44444 0.00154 0.508 GTATCAATATCACAA Rv2011c_pal_1 antisense_gca_467_from_start 16 30 - 6.44444 0.00154 0.508 GTATCAATATCACAA Rv2011c_pal_1 sense_gca_460_from_start 18 32 - 6.44444 0.00154 0.508 TTGTGATATTGATAC Rv0653c_nonpal_1 sense_Rv1461_552_from_start 6 24 + 3.03797 0.00154 0.113 AGGAATATTTCGGTACAGT Rv2324_nonpal_1 sense_Rv1461_475_from_start 21 39 + 6.13043 0.00155 0.169 GGCTCAAGGAGTCATATTT Rv2788_pal_1 sense_Rv1461_552_from_start 9 30 + 1.32222 0.00156 0.164 AATATTTCGGTACAGTAATCCC Rv2788_pal_1 antisense_Rv1461_559_from_start 18 39 + 1.32222 0.00156 0.164 GGGATTACTGTACCGAAATATT Rv2788_pal_1 sense_Rv1461_552_from_start 9 30 - 1.32222 0.00156 0.164 GGGATTACTGTACCGAAATATT Rv2788_pal_1 antisense_Rv1461_559_from_start 18 39 - 1.32222 0.00156 0.164 AATATTTCGGTACAGTAATCCC Rv0023_pal_1 sense_fadE7_118_to_stop 1 8 + 6.63291 0.00156 0.474 CGGCAACG Rv0023_pal_1 sense_fadE7_118_to_stop 1 8 - 6.63291 0.00156 0.474 CGTTGCCG Rv0023_pal_1 antisense_fadE7_121_to_stop 30 37 + 6.63291 0.00156 0.474 CGTTGCCG Rv0023_pal_1 sense_bioB_253_to_stop 33 40 + 6.63291 0.00156 0.474 CGGTGACG Rv0023_pal_1 antisense_fadE7_121_to_stop 30 37 - 6.63291 0.00156 0.474 CGGCAACG Rv0023_pal_1 sense_bioB_253_to_stop 33 40 - 6.63291 0.00156 0.474 CGTCACCG Rv0472c_nonpal_1 antisense_rocA_790_to_stop 22 32 + 0.144231 0.00156 0.211 TATTGGTACCC Rv0472c_nonpal_1 sense_rocA_797_to_stop 16 26 - 0.144231 0.00156 0.211 TATTGGTACCC Rv1816_pal_2 antisense_cobK_311_from_start 7 15 + -1.06849 0.00156 0.267 CGATGATGG Rv1816_pal_2 antisense_cobK_311_from_start 7 15 - -1.06849 0.00156 0.267 CCATCATCG Rv1994c_pal_1 9760_down_of_Rv3190c 12 26 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 5188_up_of_Rv3186 12 26 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 6723_up_of_Rv3188 12 26 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 42_up_of_Rv3179 12 26 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 1681_down_of_Rv3180c 12 26 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 6724_up_of_Rv3188 16 30 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 9761_down_of_Rv3190c 16 30 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 43_up_of_Rv3179 16 30 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 5189_up_of_Rv3186 16 30 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 1682_down_of_Rv3180c 16 30 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 6717_up_of_Rv3188 18 32 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 5182_up_of_Rv3186 18 32 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 9754_down_of_Rv3190c 18 32 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 36_up_of_Rv3179 18 32 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 1675_down_of_Rv3180c 18 32 + 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 5195_up_of_Rv3186 22 36 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 1688_down_of_Rv3180c 22 36 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 49_up_of_Rv3179 22 36 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 9767_down_of_Rv3190c 22 36 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 6730_up_of_Rv3188 22 36 + 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 6723_up_of_Rv3188 12 26 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 9760_down_of_Rv3190c 12 26 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 5188_up_of_Rv3186 12 26 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 42_up_of_Rv3179 12 26 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 1681_down_of_Rv3180c 12 26 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 5189_up_of_Rv3186 16 30 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 9761_down_of_Rv3190c 16 30 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 43_up_of_Rv3179 16 30 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 6724_up_of_Rv3188 16 30 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 1682_down_of_Rv3180c 16 30 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 1675_down_of_Rv3180c 18 32 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 9754_down_of_Rv3190c 18 32 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 5182_up_of_Rv3186 18 32 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 6717_up_of_Rv3188 18 32 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 36_up_of_Rv3179 18 32 - 5.7027 0.00156 0.105 ACCGATCAGTATACA Rv1994c_pal_1 49_up_of_Rv3179 22 36 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 6730_up_of_Rv3188 22 36 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 5195_up_of_Rv3186 22 36 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 1688_down_of_Rv3180c 22 36 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1994c_pal_1 9767_down_of_Rv3190c 22 36 - 5.7027 0.00156 0.105 TGTATACTGATCGGT Rv1828_nonpal_1 5195_up_of_Rv3186 6 29 + -5.02128 0.00156 0.291 TGTCGGTTATAAGTACACCGATCA Rv1828_nonpal_1 6730_up_of_Rv3188 6 29 + -5.02128 0.00156 0.291 TGTCGGTTATAAGTACACCGATCA Rv1828_nonpal_1 1688_down_of_Rv3180c 6 29 + -5.02128 0.00156 0.291 TGTCGGTTATAAGTACACCGATCA Rv1828_nonpal_1 9767_down_of_Rv3190c 6 29 + -5.02128 0.00156 0.291 TGTCGGTTATAAGTACACCGATCA Rv1828_nonpal_1 49_up_of_Rv3179 6 29 + -5.02128 0.00156 0.291 TGTCGGTTATAAGTACACCGATCA Rv3066_nonpal_1 10_up_of_Rv1866 6 25 + 3.03448 0.00156 0.874 GGCTGTTCTGCTGGAGGCAC Rv2359_nonpal_1 sense_Rv1461_475_from_start 11 38 - -16.7019 0.00157 0.114 AATATGACTCCTTGAGCCTCCAGATCCT Rv0117_nonpal_1 antisense_accA1_595_from_start 8 34 + -10.8173 0.00157 0.196 ACAAACCGCTCCAGGAATAGCGTATCG Rv0117_nonpal_1 sense_accA1_598_from_start 4 30 - -10.8173 0.00157 0.196 ACAAACCGCTCCAGGAATAGCGTATCG Rv3488_pal_1 sense_pks9_325_to_stop 24 31 + 2.48529 0.00157 0.203 GGCTATCG Rv3488_pal_1 sense_pks9_325_to_stop 24 31 - 2.48529 0.00157 0.203 CGATAGCC Rv1219c_pal_1 37_up_of_Rv2172c 23 31 + 5.70886 0.00157 0.194 GGTTGATTT Rv1219c_pal_1 sense_mptA_23_from_start 23 31 + 5.70886 0.00157 0.194 GGTTGATTT Rv1219c_pal_1 37_up_of_Rv2172c 23 31 - 5.70886 0.00157 0.194 AAATCAACC Rv1219c_pal_1 sense_mptA_23_from_start 23 31 - 5.70886 0.00157 0.194 AAATCAACC Rv0135c_pal_1 93_up_of_lpqG 24 33 + 7.04688 0.00158 0.278 CCAGTACCCC Rv0135c_pal_1 93_up_of_lpqG 24 33 - 7.04688 0.00158 0.278 GGGGTACTGG Rv0135c_nonpal_1 sense_bioB_253_to_stop 18 28 - 4.75 0.00158 0.336 GCATTACCTCC Rv1956_pal_1 sense_metA_384_from_start 8 15 + 3.63953 0.00158 0.206 AGATTTCC Rv1956_pal_1 sense_metA_384_from_start 8 15 - 3.63953 0.00158 0.206 GGAAATCT Rv1956_pal_1 antisense_metA_391_from_start 33 40 + 3.63953 0.00158 0.206 GGAAATCT Rv1956_pal_1 antisense_metA_391_from_start 33 40 - 3.63953 0.00158 0.206 AGATTTCC Rv0691c_nonpal_2 10_up_of_Rv1866 6 29 - -33.9327 0.00158 0.63 ATCGGTGCCTCCAGCAGAACAGCC Rv3676_nonpal_1 sense_cobK_304_from_start 17 37 + -7.68269 0.00158 1 TGGGATCCCGGTACCGCCATC Rv3676_nonpal_1 antisense_cobK_311_from_start 11 31 - -7.68269 0.00158 1 TGGGATCCCGGTACCGCCATC Rv0275c_nonpal_1 antisense_frdA_787_from_start 8 33 - -8.875 0.00159 0.135 GCTACCGCTACCTCCAGGATTACGAC Rv1353c_nonpal_2 antisense_Rv0370c_389_from_start 2 22 + -30.547 0.00159 0.207 ATCGATGAGCAGCACTGGAGG Rv2009_nonpal_1 antisense_accA1_595_from_start 14 34 + 2.50633 0.00159 0.279 CGCTCCAGGAATAGCGTATCG Rv2009_nonpal_1 sense_accA1_598_from_start 4 24 - 2.50633 0.00159 0.279 CGCTCCAGGAATAGCGTATCG Rv0022c_nonpal_1 sense_fadE7_118_to_stop 1 15 - 5.0274 0.0016 0.169 GATATCCCGTTGCCG Rv0022c_nonpal_1 sense_mmpL4_1184_to_stop 17 31 - 5.0274 0.0016 0.169 CGAATTGGTCTCCAG Rv0022c_nonpal_1 antisense_mmpL4_1187_to_stop 7 21 + 5.0274 0.0016 0.169 CGAATTGGTCTCCAG Rv0022c_nonpal_1 antisense_fadE7_121_to_stop 23 37 + 5.0274 0.0016 0.169 GATATCCCGTTGCCG Rv2887_nonpal_1 sense_Rv1278_1158_to_stop 17 31 - 2.425 0.0016 0.519 TCAGCGACCTCTCCA Rv2642_pal_1 antisense_pyrC_541_to_stop 7 27 + 3.52874 0.00161 0.651 TGACCTCGGCGGTGATCGAAA Rv2642_pal_1 antisense_pyrC_541_to_stop 7 27 - 3.52874 0.00161 0.651 TTTCGATCACCGCCGAGGTCA Rv1473A_pal_1 sense_mmpL4_1184_to_stop 5 16 + 4.64286 0.00161 0.378 TTTTGATGATTT Rv1473A_pal_1 sense_mmpL4_1184_to_stop 5 16 - 4.64286 0.00161 0.378 AAATCATCAAAA Rv1473A_pal_1 antisense_mmpL4_1187_to_stop 22 33 + 4.64286 0.00161 0.378 AAATCATCAAAA Rv1473A_pal_1 antisense_mmpL4_1187_to_stop 22 33 - 4.64286 0.00161 0.378 TTTTGATGATTT Rv0302_nonpal_1 447_down_of_accE5 8 22 + 5.44928 0.00161 0.249 CAGGTAAGCCTCCAG Rv0302_nonpal_1 antisense_Rv3282_217_to_stop 8 22 + 5.44928 0.00161 0.249 CAGGTAAGCCTCCAG Rv2788_pal_2 sense_rocA_797_to_stop 8 28 + 0.885417 0.00161 0.431 CAGTGGGTGGGTACCAATATC Rv2788_pal_2 antisense_rocA_790_to_stop 20 40 + 0.885417 0.00161 0.431 GATATTGGTACCCACCCACTG Rv2788_pal_2 sense_rocA_797_to_stop 8 28 - 0.885417 0.00161 0.431 GATATTGGTACCCACCCACTG Rv2788_pal_2 antisense_rocA_790_to_stop 20 40 - 0.885417 0.00161 0.431 CAGTGGGTGGGTACCAATATC Rv3681c_pal_1 sense_Rv0674_10_to_stop 16 29 + 5.85714 0.00161 0.29 CTGGAGGTGACATG Rv3681c_pal_1 sense_Rv0674_10_to_stop 16 29 - 5.85714 0.00161 0.29 CATGTCACCTCCAG Rv1556_pal_1 880_up_of_treZ 2 17 + 2.98947 0.00162 0.12 AGAACTGAAACGGGCT Rv1556_pal_1 antisense_treY_785_to_stop 2 17 + 2.98947 0.00162 0.12 AGAACTGAAACGGGCT Rv1556_pal_1 antisense_treZ_470_to_stop 2 17 + 2.98947 0.00162 0.12 AGAACTGAAACGGGCT Rv1556_pal_1 880_up_of_treZ 2 17 - 2.98947 0.00162 0.12 AGCCCGTTTCAGTTCT Rv1556_pal_1 antisense_treY_785_to_stop 2 17 - 2.98947 0.00162 0.12 AGCCCGTTTCAGTTCT Rv1556_pal_1 antisense_treZ_470_to_stop 2 17 - 2.98947 0.00162 0.12 AGCCCGTTTCAGTTCT Rv1556_pal_1 877_up_of_treZ 21 36 + 2.98947 0.00162 0.12 AGCCCGTTTCAGTTCT Rv1556_pal_1 sense_treZ_467_to_stop 21 36 + 2.98947 0.00162 0.12 AGCCCGTTTCAGTTCT Rv1556_pal_1 877_up_of_treZ 21 36 - 2.98947 0.00162 0.12 AGAACTGAAACGGGCT Rv1556_pal_1 sense_treZ_467_to_stop 21 36 - 2.98947 0.00162 0.12 AGAACTGAAACGGGCT Rv2359_nonpal_1 antisense_accA1_595_from_start 11 38 - -16.8654 0.00162 0.114 GGGACGATACGCTATTCCTGGAGCGGTT Rv2887_nonpal_1 antisense_aldA_642_from_start 21 35 - 2.3875 0.00162 0.519 TCAACATCGTCACCT Rv1353c_pal_2 sense_PE_PGRS57_112_from_start 11 37 + -31 0.00162 0.385 CGACCACGCAGGTGCTGGCTGCGGGCG Rv1353c_pal_2 sense_PE_PGRS54_112_from_start 11 37 + -31 0.00162 0.385 CGACCACGCAGGTGCTGGCTGCGGGCG Rv1353c_pal_2 sense_PE_PGRS54_112_from_start 11 37 - -31 0.00162 0.385 CGCCCGCAGCCAGCACCTGCGTGGTCG Rv1353c_pal_2 sense_PE_PGRS57_112_from_start 11 37 - -31 0.00162 0.385 CGCCCGCAGCCAGCACCTGCGTGGTCG Rv1404_pal_1 sense_mmpL4_1184_to_stop 6 18 + 6.0125 0.00163 0.186 TTTGATGATTTCT Rv1404_pal_1 sense_mmpL4_1184_to_stop 6 18 - 6.0125 0.00163 0.186 AGAAATCATCAAA Rv1404_pal_1 antisense_mmpL4_1187_to_stop 20 32 + 6.0125 0.00163 0.186 AGAAATCATCAAA Rv1404_pal_1 antisense_mmpL4_1187_to_stop 20 32 - 6.0125 0.00163 0.186 TTTGATGATTTCT Rv1956_pal_1 antisense_gca_467_from_start 19 26 + 3.61628 0.00163 0.206 TGATATTG Rv1956_pal_1 sense_gca_460_from_start 22 29 + 3.61628 0.00163 0.206 CAATATCA Rv1956_pal_1 antisense_gca_467_from_start 19 26 - 3.61628 0.00163 0.206 CAATATCA Rv1956_pal_1 sense_gca_460_from_start 22 29 - 3.61628 0.00163 0.206 TGATATTG Rv1049_nonpal_2 antisense_Rv1251c_1309_from_start 19 33 + 4.64 0.00163 0.176 CAGCGCCTTCAAGCT Rv0047c_nonpal_1 sense_pks6_424_from_start 7 21 + 5.82812 0.00163 0.407 GCGATAACAGCGTAT Rv0047c_nonpal_1 sense_pks6_423_from_start 7 21 + 5.82812 0.00163 0.407 GCGATAACAGCGTAT Rv1956_nonpal_1 sense_mmpL4_1184_to_stop 20 40 + 2.56977 0.00164 0.256 GAGACCAATTCGAAGCTATTT Rv0465c_nonpal_1 antisense_pyrC_541_to_stop 13 36 + -11.5287 0.00164 0.384 CGGCGGTGATCGAAATACCCTGGT Rv0465c_nonpal_1 sense_pyrC_548_to_stop 12 35 - -11.5287 0.00164 0.384 CGGCGGTGATCGAAATACCCTGGT Rv3246c_nonpal_1 antisense_pks6_430_from_start 17 36 + 3.59259 0.00164 0.173 CACGATCTGGATACGCTGTT Rv3246c_nonpal_1 antisense_pks6_431_from_start 17 36 + 3.59259 0.00164 0.173 CACGATCTGGATACGCTGTT Rv3246c_nonpal_1 sense_pks6_424_from_start 12 31 - 3.59259 0.00164 0.173 CACGATCTGGATACGCTGTT Rv3246c_nonpal_1 sense_pks6_423_from_start 12 31 - 3.59259 0.00164 0.173 CACGATCTGGATACGCTGTT Rv1473A_nonpal_2 antisense_fadE7_121_to_stop 4 11 + 0.150685 0.00165 0.149 GATGACCG Rv1473A_nonpal_2 sense_fadE7_118_to_stop 27 34 - 0.150685 0.00165 0.149 GATGACCG Rv0047c_pal_1 antisense_frdA_787_from_start 18 29 + 6.12121 0.00165 0.345 TGGAGGTAGCGG Rv0047c_pal_1 antisense_frdA_787_from_start 18 29 - 6.12121 0.00165 0.345 CCGCTACCTCCA Rv1219c_nonpal_1 sense_bioB_253_to_stop 5 19 - 3.43038 0.00165 0.599 CCAGGTCGGCGAACG Rv1473A_nonpal_1 1662_up_of_Rv2018 19 32 + -1.28767 0.00165 0.38 CAGTGAAATTGATA Rv1816_pal_1 sense_metA_384_from_start 11 23 + 6.26897 0.00166 0.144 TTTCCGCTGATCT Rv1816_pal_1 sense_metA_384_from_start 11 23 - 6.26897 0.00166 0.144 AGATCAGCGGAAA Rv1816_pal_1 antisense_metA_391_from_start 25 37 + 6.26897 0.00166 0.144 AGATCAGCGGAAA Rv1816_pal_1 antisense_metA_391_from_start 25 37 - 6.26897 0.00166 0.144 TTTCCGCTGATCT Rv0678_nonpal_1 antisense_aldA_642_from_start 18 32 + 6.04688 0.00166 0.119 TGGAGGTGACGATGT Rv0275c_nonpal_1 sense_gca_460_from_start 3 28 - -9.08654 0.00166 0.135 GATATTGATACGCCAGCATGTCGGTG Rv1556_pal_1 antisense_accA1_595_from_start 23 38 + 2.89474 0.00167 0.12 AATAGCGTATCGTCCC Rv1556_pal_1 antisense_accA1_595_from_start 23 38 - 2.89474 0.00167 0.12 GGGACGATACGCTATT Rv2250c_nonpal_1 1662_up_of_Rv2018 28 37 - 5.98551 0.00167 0.274 TCTTGTATCA Rv3830c_nonpal_2 antisense_cobK_311_from_start 4 30 + -17.8173 0.00167 0.51 CCGCGATGATGGCGGTACCGGGATCCC Rv3488_nonpal_1 antisense_fadE7_121_to_stop 22 35 - 0.485294 0.00168 0.202 GCAACGGGATATCG Rv3488_nonpal_1 sense_fadE7_118_to_stop 3 16 + 0.485294 0.00168 0.202 GCAACGGGATATCG Rv3574_nonpal_1 antisense_PPE34_1661_from_start 4 18 - 3.60294 0.00168 0.255 CAGATTACGTGACAG Rv3574_nonpal_1 sense_PPE34_3066_to_stop 20 34 + 3.60294 0.00168 0.255 CAGATTACGTGACAG Rv3574_nonpal_1 sense_PPE34_1439_from_start 20 34 + 3.60294 0.00168 0.255 CAGATTACGTGACAG Rv3574_nonpal_1 sense_PPE34_1664_from_start 20 34 + 3.60294 0.00168 0.255 CAGATTACGTGACAG Rv0678_pal_1 sense_Rv1461_475_from_start 5 11 + -1.82353 0.00168 0.428 TCAGAGA Rv0678_pal_1 sense_Rv1461_475_from_start 5 11 - -1.82353 0.00168 0.428 TCTCTGA Rv0678_pal_1 antisense_Rv1461_472_from_start 27 33 + -1.82353 0.00168 0.428 TCTCTGA Rv0678_pal_1 antisense_Rv1461_472_from_start 27 33 - -1.82353 0.00168 0.428 TCAGAGA Rv0135c_pal_1 antisense_Rv1251c_1309_from_start 4 13 + 6.84375 0.00169 0.278 GAGGTACAGC Rv0135c_pal_1 antisense_Rv1251c_1309_from_start 4 13 - 6.84375 0.00169 0.278 GCTGTACCTC Rv0967_pal_2 antisense_cobK_311_from_start 7 17 + 0.0253165 0.00169 0.887 CGATGATGGCG Rv0967_pal_2 antisense_cobK_311_from_start 7 17 - 0.0253165 0.00169 0.887 CGCCATCATCG Rv0081_nonpal_2 antisense_frdA_787_from_start 3 24 + -21.5481 0.00169 0.43 CCGAGGTCGTAATCCTGGAGGT Rv1473A_nonpal_2 sense_rocA_797_to_stop 22 29 + 0.0958904 0.00169 0.149 CAATATCG Rv1473A_nonpal_2 antisense_rocA_790_to_stop 19 26 - 0.0958904 0.00169 0.149 CAATATCG Rv1473A_nonpal_2 antisense_aldA_642_from_start 27 34 - 0.0958904 0.00169 0.149 CAACATCG Rv2034_nonpal_1 sense_Rv1461_552_from_start 20 30 - 6.55882 0.00169 0.359 GGGATTACTGT Rv2034_nonpal_1 antisense_Rv1461_559_from_start 18 28 + 6.55882 0.00169 0.359 GGGATTACTGT Rv2788_nonpal_1 93_up_of_lpqG 4 31 - -25.9651 0.00169 0.808 GGTACTGGCATCGACGGGCCCTACAATG Rv2009_nonpal_1 sense_Rv1461_552_from_start 8 28 + 2.31646 0.00169 0.279 GAATATTTCGGTACAGTAATC Rv2009_nonpal_1 antisense_Rv1461_559_from_start 20 40 - 2.31646 0.00169 0.279 GAATATTTCGGTACAGTAATC Rv0275c_nonpal_1 antisense_Rv1461_416_from_start 8 33 - -9.15385 0.00169 0.135 GAGATTAGTAGCTGGAGTAGCCGCAC Rv3574_pal_1 antisense_gca_467_from_start 9 24 + 5.02899 0.00169 0.245 GTAAGACTTGTGATAT Rv3574_pal_1 antisense_gca_467_from_start 9 24 - 5.02899 0.00169 0.245 ATATCACAAGTCTTAC Rv3574_pal_1 sense_gca_460_from_start 24 39 + 5.02899 0.00169 0.245 ATATCACAAGTCTTAC Rv3574_pal_1 sense_gca_460_from_start 24 39 - 5.02899 0.00169 0.245 GTAAGACTTGTGATAT Rv2324_nonpal_2 antisense_aldA_642_from_start 18 32 - 4.12048 0.00169 0.47 ACATCGTCACCTCCA Rv1219c_pal_1 sense_metA_384_from_start 2 10 + 5.59494 0.00169 0.194 GGCTCAAGA Rv1219c_pal_1 sense_metA_384_from_start 2 10 - 5.59494 0.00169 0.194 TCTTGAGCC Rv1404_nonpal_1 sense_gca_460_from_start 3 28 + 3.1125 0.0017 0.0602 CACCGACATGCTGGCGTATCAATATC Rv0576_nonpal_1 sense_gca_460_from_start 1 26 + 3.14773 0.0017 0.0971 GCCACCGACATGCTGGCGTATCAATA Rv0576_nonpal_1 13078_down_of_Rv3190c 13 38 + 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 10041_up_of_Rv3188 13 38 + 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 4999_down_of_Rv3180c 13 38 + 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 8506_up_of_Rv3186 13 38 + 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 3360_up_of_Rv3179 13 38 + 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 4992_down_of_Rv3180c 10 35 - 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 8499_up_of_Rv3186 10 35 - 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 10034_up_of_Rv3188 10 35 - 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 3353_up_of_Rv3179 10 35 - 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0576_nonpal_1 13071_down_of_Rv3190c 10 35 - 3.14773 0.0017 0.0971 ACAAAGTACACCAATCGGTTTACTGT Rv0081_nonpal_1 sense_Rv1461_552_from_start 5 19 - 2.81333 0.0017 0.28 ACCGAAATATTCCTT Rv2009_pal_1 sense_Rv1461_552_from_start 7 35 + 3.0219 0.0017 0.142 GGAATATTTCGGTACAGTAATCCCTGCCG Rv2009_pal_1 sense_Rv1461_552_from_start 7 35 - 3.0219 0.0017 0.142 CGGCAGGGATTACTGTACCGAAATATTCC Rv2788_nonpal_1 antisense_aldA_642_from_start 7 34 + -26.0116 0.0017 0.808 AGCGTGACTGCTGGAGGTGACGATGTTG Rv3574_nonpal_1 sense_fadE7_118_to_stop 19 33 - 3.54412 0.00171 0.255 ATGACCGGGTACTCC Rv3574_nonpal_1 antisense_fadE7_121_to_stop 5 19 + 3.54412 0.00171 0.255 ATGACCGGGTACTCC Rv1846c_nonpal_1 43_up_of_Rv3179 8 29 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 9761_down_of_Rv3190c 8 29 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 6724_up_of_Rv3188 8 29 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 1682_down_of_Rv3180c 8 29 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 5189_up_of_Rv3186 8 29 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 9767_down_of_Rv3190c 14 35 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 1688_down_of_Rv3180c 14 35 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 49_up_of_Rv3179 14 35 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 6730_up_of_Rv3188 14 35 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 5195_up_of_Rv3186 14 35 + -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 9760_down_of_Rv3190c 13 34 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 5188_up_of_Rv3186 13 34 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 42_up_of_Rv3179 13 34 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 1681_down_of_Rv3180c 13 34 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 6723_up_of_Rv3188 13 34 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 9754_down_of_Rv3190c 19 40 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 5182_up_of_Rv3186 19 40 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 6717_up_of_Rv3188 19 40 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 1675_down_of_Rv3180c 19 40 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv1846c_nonpal_1 36_up_of_Rv3179 19 40 - -9.81915 0.00171 0.274 ATAAGTACACCGATCAGTATAC Rv2250c_pal_1 antisense_aldA_642_from_start 9 15 + 7.13235 0.00171 0.497 CGTGACT Rv2250c_pal_1 antisense_aldA_642_from_start 9 15 - 7.13235 0.00171 0.497 AGTCACG Rv0302_nonpal_2 antisense_aldA_642_from_start 15 25 - 3.69231 0.00171 1 CACCTCCAGCA Rv2989_pal_1 sense_pyrC_548_to_stop 9 25 + 2.63636 0.00172 0.596 AGGACCAGGGTATTTCG Rv2989_pal_1 antisense_pyrC_541_to_stop 23 39 + 2.63636 0.00172 0.596 CGAAATACCCTGGTCCT Rv2989_pal_1 sense_pyrC_548_to_stop 9 25 - 2.63636 0.00172 0.596 CGAAATACCCTGGTCCT Rv2989_pal_1 antisense_pyrC_541_to_stop 23 39 - 2.63636 0.00172 0.596 AGGACCAGGGTATTTCG Rv0081_nonpal_1 sense_Rv1278_1158_to_stop 24 38 + 2.77333 0.00172 0.28 GTCGCTGACCTAGCC Rv1353c_pal_1 sense_Rv2279_300_to_stop 7 17 + 6.86364 0.00172 0.334 CATACGGATAG Rv1353c_pal_1 sense_Rv2279_300_to_stop 7 17 - 6.86364 0.00172 0.334 CTATCCGTATG Rv3557c_pal_1 sense_pks9_325_to_stop 24 37 + -3.29808 0.00173 0.244 GGCTATCGGTTTGC Rv3557c_pal_1 sense_pks9_325_to_stop 24 37 - -3.29808 0.00173 0.244 GCAAACCGATAGCC Rv1167c_nonpal_1 sense_Rv2038c_183_from_start 6 20 - -1.46154 0.00173 0.759 ACGCCCACAGTCCAG Rv0465c_nonpal_1 antisense_PPE24_1270_to_stop 12 35 + -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv0465c_nonpal_1 antisense_PPE24_1570_to_stop 12 35 + -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv0465c_nonpal_1 antisense_PPE24_1345_to_stop 12 35 + -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv0465c_nonpal_1 sense_PPE24_1577_to_stop 13 36 - -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv0465c_nonpal_1 sense_PPE24_1277_to_stop 13 36 - -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv0465c_nonpal_1 sense_PPE24_1352_to_stop 13 36 - -11.7931 0.00173 0.384 AGCCACCGATTGTGATACCCGCGG Rv3557c_nonpal_1 sense_Rv1461_552_from_start 1 20 - -11.25 0.00173 0.324 TACCGAAATATTCCTTGAAA Rv1404_pal_1 sense_pks9_325_to_stop 7 19 + 5.9 0.00173 0.186 CGCAATCGTCTCC Rv1404_pal_1 sense_pks9_325_to_stop 7 19 - 5.9 0.00173 0.186 GGAGACGATTGCG Rv2250c_nonpal_1 13078_down_of_Rv3190c 1 10 + 5.89855 0.00173 0.274 TACCGTCAAA Rv2250c_nonpal_1 3360_up_of_Rv3179 1 10 + 5.89855 0.00173 0.274 TACCGTCAAA Rv2250c_nonpal_1 10041_up_of_Rv3188 1 10 + 5.89855 0.00173 0.274 TACCGTCAAA Rv2250c_nonpal_1 4999_down_of_Rv3180c 1 10 + 5.89855 0.00173 0.274 TACCGTCAAA Rv2250c_nonpal_1 8506_up_of_Rv3186 1 10 + 5.89855 0.00173 0.274 TACCGTCAAA Rv0691c_pal_1 sense_Rv1461_475_from_start 28 39 + 6.08696 0.00174 0.116 GGAGTCATATTT Rv0691c_pal_1 sense_Rv1461_475_from_start 28 39 - 6.08696 0.00174 0.116 AAATATGACTCC Rv1556_pal_1 1682_down_of_Rv3180c 13 28 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 6724_up_of_Rv3188 13 28 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 43_up_of_Rv3179 13 28 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 5189_up_of_Rv3186 13 28 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 9761_down_of_Rv3190c 13 28 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 9760_down_of_Rv3190c 14 29 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 1681_down_of_Rv3180c 14 29 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 5188_up_of_Rv3186 14 29 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 6723_up_of_Rv3188 14 29 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 42_up_of_Rv3179 14 29 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 1688_down_of_Rv3180c 19 34 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 6730_up_of_Rv3188 19 34 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 5195_up_of_Rv3186 19 34 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 9767_down_of_Rv3190c 19 34 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 49_up_of_Rv3179 19 34 + 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 9754_down_of_Rv3190c 20 35 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 6717_up_of_Rv3188 20 35 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 36_up_of_Rv3179 20 35 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 1675_down_of_Rv3180c 20 35 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 5182_up_of_Rv3186 20 35 + 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 1682_down_of_Rv3180c 13 28 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 5189_up_of_Rv3186 13 28 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 6724_up_of_Rv3188 13 28 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 43_up_of_Rv3179 13 28 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 9761_down_of_Rv3190c 13 28 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 6723_up_of_Rv3188 14 29 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 1681_down_of_Rv3180c 14 29 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 42_up_of_Rv3179 14 29 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 5188_up_of_Rv3186 14 29 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 9760_down_of_Rv3190c 14 29 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 5195_up_of_Rv3186 19 34 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 6730_up_of_Rv3188 19 34 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 9767_down_of_Rv3190c 19 34 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 49_up_of_Rv3179 19 34 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 1688_down_of_Rv3180c 19 34 - 2.77895 0.00174 0.12 TATACTGATCGGTGTA Rv1556_pal_1 9754_down_of_Rv3190c 20 35 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 6717_up_of_Rv3188 20 35 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 36_up_of_Rv3179 20 35 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 1675_down_of_Rv3180c 20 35 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv1556_pal_1 5182_up_of_Rv3186 20 35 - 2.77895 0.00174 0.12 TACACCGATCAGTATA Rv2359_pal_1 1662_up_of_Rv2018 19 39 + -10.0476 0.00174 0.143 CAGTGAAATTGATACAAGATC Rv2359_pal_1 1662_up_of_Rv2018 19 39 - -10.0476 0.00174 0.143 GATCTTGTATCAATTTCACTG Rv0678_nonpal_1 antisense_mmpL4_1187_to_stop 25 39 - 5.95312 0.00174 0.123 CGCGGATTTTGATGA Rv2788_nonpal_1 10_up_of_Rv1866 6 33 + -26.1512 0.00174 0.808 GGCTGTTCTGCTGGAGGCACCGATATGG Rv0602c_pal_1 antisense_pks6_430_from_start 7 14 + 2.88608 0.00175 0.135 TTCGTGAA Rv0602c_pal_1 antisense_pks6_431_from_start 7 14 + 2.88608 0.00175 0.135 TTCGTGAA Rv0602c_pal_1 antisense_pks6_430_from_start 7 14 - 2.88608 0.00175 0.135 TTCACGAA Rv0602c_pal_1 antisense_pks6_431_from_start 7 14 - 2.88608 0.00175 0.135 TTCACGAA Rv0275c_nonpal_1 antisense_metA_391_from_start 3 28 + -9.29808 0.00175 0.135 GCCTGCACCTGGTCACGTATCGAGAT Rv1674c_nonpal_1 sense_gca_460_from_start 19 36 + -4.05319 0.00175 0.357 TATCAATATCACAAGTCT Rv1674c_nonpal_1 antisense_gca_467_from_start 12 29 - -4.05319 0.00175 0.357 TATCAATATCACAAGTCT Rv1473A_pal_1 antisense_cobK_311_from_start 7 18 + 4.44286 0.00175 0.378 CGATGATGGCGG Rv1473A_pal_1 antisense_cobK_311_from_start 7 18 - 4.44286 0.00175 0.378 CCGCCATCATCG Rv2324_nonpal_2 antisense_aldA_642_from_start 23 37 + 4 0.00176 0.47 GTGACGATGTTGACA Rv0081_nonpal_1 antisense_frdA_787_from_start 8 22 + 2.70667 0.00176 0.28 GTCGTAATCCTGGAG Rv0047c_pal_1 antisense_metA_391_from_start 14 25 + 6 0.00176 0.345 GTCACGTATCGA Rv0047c_pal_1 sense_metA_384_from_start 23 34 + 6 0.00176 0.345 TCGATACGTGAC Rv0047c_pal_1 antisense_metA_391_from_start 14 25 - 6 0.00176 0.345 TCGATACGTGAC Rv0047c_pal_1 sense_metA_384_from_start 23 34 - 6 0.00176 0.345 GTCACGTATCGA Rv0302_pal_1 antisense_frdA_787_from_start 20 31 + 6.11029 0.00177 0.249 GAGGTAGCGGTA Rv0302_pal_1 antisense_frdA_787_from_start 20 31 - 6.11029 0.00177 0.249 TACCGCTACCTC Rv1033c_nonpal_1 antisense_metA_391_from_start 18 32 + 0.974684 0.00177 0.4 CGTATCGAGATCAGC Rv1033c_nonpal_1 sense_metA_384_from_start 16 30 - 0.974684 0.00177 0.4 CGTATCGAGATCAGC Rv3246c_pal_1 sense_pks6_423_from_start 7 22 + 5.70732 0.00177 0.104 GCGATAACAGCGTATC Rv3246c_pal_1 sense_pks6_424_from_start 7 22 + 5.70732 0.00177 0.104 GCGATAACAGCGTATC Rv3246c_pal_1 sense_pks6_423_from_start 7 22 - 5.70732 0.00177 0.104 GATACGCTGTTATCGC Rv3246c_pal_1 sense_pks6_424_from_start 7 22 - 5.70732 0.00177 0.104 GATACGCTGTTATCGC Rv0135c_pal_1 sense_Rv1461_552_from_start 15 24 + 6.67188 0.00177 0.278 TCGGTACAGT Rv0135c_pal_1 sense_Rv1461_552_from_start 15 24 - 6.67188 0.00177 0.278 ACTGTACCGA Rv0135c_pal_1 antisense_Rv1461_559_from_start 24 33 + 6.67188 0.00177 0.278 ACTGTACCGA Rv0135c_pal_1 antisense_Rv1461_559_from_start 24 33 - 6.67188 0.00177 0.278 TCGGTACAGT Rv1404_pal_1 sense_metA_384_from_start 3 15 + 5.85 0.00178 0.186 GCTCAAGATTTCC Rv1404_pal_1 sense_metA_384_from_start 3 15 - 5.85 0.00178 0.186 GGAAATCTTGAGC Rv1816_pal_2 antisense_pyrC_541_to_stop 4 12 + -1.17808 0.00178 0.267 GGGTGACCT Rv1816_pal_2 antisense_pyrC_541_to_stop 4 12 - -1.17808 0.00178 0.267 AGGTCACCC Rv3681c_pal_1 sense_pks6_423_from_start 3 16 + 5.64286 0.00178 0.29 GTGTGCGATAACAG Rv3681c_pal_1 sense_pks6_424_from_start 3 16 + 5.64286 0.00178 0.29 GTGTGCGATAACAG Rv3681c_pal_1 sense_pks6_424_from_start 3 16 - 5.64286 0.00178 0.29 CTGTTATCGCACAC Rv3681c_pal_1 sense_pks6_423_from_start 3 16 - 5.64286 0.00178 0.29 CTGTTATCGCACAC Rv2034_nonpal_1 10_up_of_Rv1866 18 28 + 6.45588 0.00178 0.359 GGAGGCACCGA Rv2506_nonpal_1 antisense_Rv1461_416_from_start 2 20 + -0.712766 0.00179 0.425 CGTATTGTGCGGCTACTCC Rv0691c_pal_1 880_up_of_treZ 2 13 + 6.01449 0.00179 0.116 AGAACTGAAACG Rv0691c_pal_1 antisense_treZ_470_to_stop 2 13 + 6.01449 0.00179 0.116 AGAACTGAAACG Rv0691c_pal_1 antisense_treY_785_to_stop 2 13 + 6.01449 0.00179 0.116 AGAACTGAAACG Rv0691c_pal_1 880_up_of_treZ 2 13 - 6.01449 0.00179 0.116 CGTTTCAGTTCT Rv0691c_pal_1 antisense_treZ_470_to_stop 2 13 - 6.01449 0.00179 0.116 CGTTTCAGTTCT Rv0691c_pal_1 antisense_treY_785_to_stop 2 13 - 6.01449 0.00179 0.116 CGTTTCAGTTCT Rv0691c_pal_1 sense_Rv0674_10_to_stop 18 29 + 6.01449 0.00179 0.116 GGAGGTGACATG Rv0691c_pal_1 877_up_of_treZ 25 36 + 6.01449 0.00179 0.116 CGTTTCAGTTCT Rv0691c_pal_1 sense_treZ_467_to_stop 25 36 + 6.01449 0.00179 0.116 CGTTTCAGTTCT Rv0691c_pal_1 sense_Rv0674_10_to_stop 18 29 - 6.01449 0.00179 0.116 CATGTCACCTCC Rv0691c_pal_1 sense_treZ_467_to_stop 25 36 - 6.01449 0.00179 0.116 AGAACTGAAACG Rv0691c_pal_1 877_up_of_treZ 25 36 - 6.01449 0.00179 0.116 AGAACTGAAACG Rv3488_nonpal_1 antisense_cobK_311_from_start 10 23 - 0.220588 0.00179 0.205 CGGTACCGCCATCA Rv3488_nonpal_1 sense_cobK_304_from_start 25 38 + 0.220588 0.00179 0.205 CGGTACCGCCATCA Rv0022c_nonpal_1 3353_up_of_Rv3179 11 25 - 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 8499_up_of_Rv3186 11 25 - 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 10034_up_of_Rv3188 11 25 - 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 13071_down_of_Rv3190c 11 25 - 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 4992_down_of_Rv3180c 11 25 - 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 10041_up_of_Rv3188 23 37 + 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 8506_up_of_Rv3186 23 37 + 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 3360_up_of_Rv3179 23 37 + 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 4999_down_of_Rv3180c 23 37 + 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0022c_nonpal_1 13078_down_of_Rv3190c 23 37 + 4.71233 0.0018 0.169 CCAATCGGTTTACTG Rv0465c_nonpal_1 sense_pks6_424_from_start 11 34 + -11.9885 0.0018 0.384 TAACAGCGTATCCAGATCGTGGGT Rv0465c_nonpal_1 sense_pks6_423_from_start 11 34 + -11.9885 0.0018 0.384 TAACAGCGTATCCAGATCGTGGGT Rv0465c_nonpal_1 antisense_pks6_431_from_start 14 37 - -11.9885 0.0018 0.384 TAACAGCGTATCCAGATCGTGGGT Rv0465c_nonpal_1 antisense_pks6_430_from_start 14 37 - -11.9885 0.0018 0.384 TAACAGCGTATCCAGATCGTGGGT Rv0081_nonpal_2 49_up_of_Rv3179 2 23 + -21.9038 0.0018 0.43 ACAGTGTCGGTTATAAGTACAC Rv0081_nonpal_2 6730_up_of_Rv3188 2 23 + -21.9038 0.0018 0.43 ACAGTGTCGGTTATAAGTACAC Rv0081_nonpal_2 1688_down_of_Rv3180c 2 23 + -21.9038 0.0018 0.43 ACAGTGTCGGTTATAAGTACAC Rv0081_nonpal_2 9767_down_of_Rv3190c 2 23 + -21.9038 0.0018 0.43 ACAGTGTCGGTTATAAGTACAC Rv0081_nonpal_2 5195_up_of_Rv3186 2 23 + -21.9038 0.0018 0.43 ACAGTGTCGGTTATAAGTACAC Rv1219c_pal_1 sense_metA_384_from_start 15 23 + 5.44304 0.0018 0.194 CGCTGATCT Rv1219c_pal_1 sense_metA_384_from_start 15 23 - 5.44304 0.0018 0.194 AGATCAGCG Rv1219c_pal_1 antisense_metA_391_from_start 25 33 + 5.44304 0.0018 0.194 AGATCAGCG Rv1219c_pal_1 antisense_metA_391_from_start 25 33 - 5.44304 0.0018 0.194 CGCTGATCT Rv0818_nonpal_1 sense_Rv2963_537_to_stop 6 26 - -1.51064 0.00181 0.362 TTCGGGTACCCATGCCGCGAT Rv2506_nonpal_1 antisense_Rv3282_217_to_stop 7 25 - -0.755319 0.00181 0.425 GATCTGGAGGCTTACCTGG Rv2506_nonpal_1 447_down_of_accE5 7 25 - -0.755319 0.00181 0.425 GATCTGGAGGCTTACCTGG Rv2250c_nonpal_1 antisense_metA_391_from_start 15 24 + 5.78261 0.00181 0.274 TCACGTATCG Rv2250c_nonpal_1 sense_metA_384_from_start 24 33 - 5.78261 0.00181 0.274 TCACGTATCG Rv0576_nonpal_1 sense_Rv1461_552_from_start 7 32 + 2.96591 0.00181 0.101 GGAATATTTCGGTACAGTAATCCCTG Rv3830c_nonpal_2 sense_accA1_598_from_start 9 35 + -18.2212 0.00181 0.51 CGCTATTCCTGGAGCGGTTTGTGTTGC Rv3830c_nonpal_2 antisense_accA1_595_from_start 3 29 - -18.2212 0.00181 0.51 CGCTATTCCTGGAGCGGTTTGTGTTGC Rv1353c_nonpal_1 antisense_cobK_311_from_start 12 26 + 6.09091 0.00181 0.18 ATGGCGGTACCGGGA Rv1353c_nonpal_1 sense_cobK_304_from_start 22 36 - 6.09091 0.00181 0.18 ATGGCGGTACCGGGA Rv1556_pal_1 sense_Rv1461_552_from_start 7 22 + 2.65263 0.00181 0.122 GGAATATTTCGGTACA Rv1556_pal_1 sense_Rv1461_552_from_start 7 22 - 2.65263 0.00181 0.122 TGTACCGAAATATTCC Rv0653c_nonpal_1 antisense_aldA_642_from_start 17 35 + 2.5443 0.00182 0.13 CTGGAGGTGACGATGTTGA Rv0135c_nonpal_1 sense_PPE24_1577_to_stop 16 26 + 3.95312 0.00182 0.336 CGGGTATCACA Rv0135c_nonpal_1 sense_PPE24_1277_to_stop 16 26 + 3.95312 0.00182 0.336 CGGGTATCACA Rv0135c_nonpal_1 sense_PPE24_1352_to_stop 16 26 + 3.95312 0.00182 0.336 CGGGTATCACA Rv0135c_nonpal_1 antisense_PPE24_1270_to_stop 22 32 - 3.95312 0.00182 0.336 CGGGTATCACA Rv0135c_nonpal_1 antisense_PPE24_1345_to_stop 22 32 - 3.95312 0.00182 0.336 CGGGTATCACA Rv0135c_nonpal_1 antisense_PPE24_1570_to_stop 22 32 - 3.95312 0.00182 0.336 CGGGTATCACA Rv0023_nonpal_1 sense_Rv2038c_183_from_start 10 30 + 5.33803 0.00182 0.131 ACTGTGGGCGTATCCGGATCG Rv2359_pal_1 antisense_gca_467_from_start 10 30 + -10.2476 0.00182 0.143 TAAGACTTGTGATATTGATAC Rv2359_pal_1 sense_gca_460_from_start 18 38 + -10.2476 0.00182 0.143 GTATCAATATCACAAGTCTTA Rv2359_pal_1 antisense_gca_467_from_start 10 30 - -10.2476 0.00182 0.143 GTATCAATATCACAAGTCTTA Rv2359_pal_1 sense_gca_460_from_start 18 38 - -10.2476 0.00182 0.143 TAAGACTTGTGATATTGATAC Rv0472c_nonpal_1 antisense_frdA_787_from_start 24 34 + -0.326923 0.00182 0.211 TAGCGGTAGCC Rv3066_pal_1 sense_pyrC_548_to_stop 2 15 + 4.375 0.00183 1 TGGGCTAAGGACCA Rv3066_pal_1 sense_pyrC_548_to_stop 2 15 - 4.375 0.00183 1 TGGTCCTTAGCCCA Rv3830c_nonpal_1 sense_PPE24_1352_to_stop 19 33 + 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3830c_nonpal_1 sense_PPE24_1277_to_stop 19 33 + 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3830c_nonpal_1 sense_PPE24_1577_to_stop 19 33 + 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3830c_nonpal_1 antisense_PPE24_1570_to_stop 15 29 - 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3830c_nonpal_1 antisense_PPE24_1345_to_stop 15 29 - 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3830c_nonpal_1 antisense_PPE24_1270_to_stop 15 29 - 3.82432 0.00183 0.576 GTATCACAATCGGTG Rv3249c_nonpal_1 4_up_of_Rv1049 22 32 + 5.64062 0.00183 0.47 TAATGGGCAAA Rv3249c_nonpal_1 7_up_of_Rv1049 6 16 - 5.64062 0.00183 0.47 TAATGGGCAAA Rv0275c_nonpal_1 sense_pks6_424_from_start 4 29 - -9.50962 0.00183 0.135 CGATCTGGATACGCTGTTATCGCACA Rv0275c_nonpal_1 sense_pks6_423_from_start 4 29 - -9.50962 0.00183 0.135 CGATCTGGATACGCTGTTATCGCACA Rv0678_nonpal_1 sense_metA_384_from_start 6 20 + 5.85938 0.00183 0.128 CAAGATTTCCGCTGA Rv0967_pal_1 sense_Rv1278_1158_to_stop 27 33 + -1.67647 0.00184 0.53 GCTGACC Rv0967_pal_1 sense_Rv1278_1158_to_stop 27 33 - -1.67647 0.00184 0.53 GGTCAGC Rv1353c_nonpal_1 sense_Rv1461_552_from_start 23 37 + 6.06061 0.00184 0.18 GTAATCCCTGCCGGC Rv1353c_nonpal_1 antisense_Rv1461_559_from_start 11 25 - 6.06061 0.00184 0.18 GTAATCCCTGCCGGC Rv1353c_nonpal_1 10_up_of_Rv1866 23 37 - 6.06061 0.00184 0.18 GTCACCATATCGGTG Rv3066_pal_1 4_up_of_Rv1049 5 18 + 4.35227 0.00185 1 GCTACACGAGTCTG Rv3066_pal_1 4_up_of_Rv1049 5 18 - 4.35227 0.00185 1 CAGACTCGTGTAGC Rv3066_pal_1 7_up_of_Rv1049 20 33 + 4.35227 0.00185 1 CAGACTCGTGTAGC Rv3066_pal_1 7_up_of_Rv1049 20 33 - 4.35227 0.00185 1 GCTACACGAGTCTG Rv2989_nonpal_2 antisense_aldA_642_from_start 19 33 + 0.586207 0.00185 0.991 GGAGGTGACGATGTT Rv1675c_pal_1 antisense_aldA_642_from_start 11 26 + -1.84762 0.00185 1 TGACTGCTGGAGGTGA Rv1675c_pal_1 antisense_aldA_642_from_start 11 26 - -1.84762 0.00185 1 TCACCTCCAGCAGTCA Rv0022c_nonpal_1 sense_PPE24_1352_to_stop 17 31 - 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv0022c_nonpal_1 sense_PPE24_1577_to_stop 17 31 - 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv0022c_nonpal_1 sense_PPE24_1277_to_stop 17 31 - 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv0022c_nonpal_1 antisense_PPE24_1570_to_stop 17 31 + 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv0022c_nonpal_1 antisense_PPE24_1345_to_stop 17 31 + 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv0022c_nonpal_1 antisense_PPE24_1270_to_stop 17 31 + 4.63014 0.00185 0.169 CCGATTGTGATACCC Rv3574_nonpal_2 antisense_Rv2279_293_to_stop 2 29 - -34.3932 0.00186 0.397 GGATCTCAGTACACATCGATCCGGTTCA Rv1353c_nonpal_1 6724_up_of_Rv3188 1 15 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 5189_up_of_Rv3186 1 15 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 43_up_of_Rv3179 1 15 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 1682_down_of_Rv3180c 1 15 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 9761_down_of_Rv3190c 1 15 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 9767_down_of_Rv3190c 7 21 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 6730_up_of_Rv3188 7 21 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 49_up_of_Rv3179 7 21 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 5195_up_of_Rv3186 7 21 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv1353c_nonpal_1 1688_down_of_Rv3180c 7 21 - 6.04545 0.00186 0.18 GTACTTATAACCGAC Rv3574_pal_1 antisense_fadE7_121_to_stop 4 19 + 4.81159 0.00186 0.245 GATGACCGGGTACTCC Rv3574_pal_1 sense_fadE7_118_to_stop 19 34 + 4.81159 0.00186 0.245 GGAGTACCCGGTCATC Rv3574_pal_1 antisense_fadE7_121_to_stop 4 19 - 4.81159 0.00186 0.245 GGAGTACCCGGTCATC Rv3574_pal_1 sense_fadE7_118_to_stop 19 34 - 4.81159 0.00186 0.245 GATGACCGGGTACTCC Rv0818_pal_1 sense_PPE34_1664_from_start 23 38 + 3.375 0.00186 0.105 ATTACGTGACAGTGAG Rv0818_pal_1 sense_PPE34_3066_to_stop 23 38 + 3.375 0.00186 0.105 ATTACGTGACAGTGAG Rv0818_pal_1 sense_PPE34_1439_from_start 23 38 + 3.375 0.00186 0.105 ATTACGTGACAGTGAG Rv0818_pal_1 sense_PPE34_1664_from_start 23 38 - 3.375 0.00186 0.105 CTCACTGTCACGTAAT Rv0818_pal_1 sense_PPE34_3066_to_stop 23 38 - 3.375 0.00186 0.105 CTCACTGTCACGTAAT Rv0818_pal_1 sense_PPE34_1439_from_start 23 38 - 3.375 0.00186 0.105 CTCACTGTCACGTAAT Rv1255c_nonpal_1 antisense_pks6_430_from_start 3 22 + 0.344828 0.00186 0.391 AGCATTCGTGAACCCACGAT Rv1255c_nonpal_1 antisense_pks6_431_from_start 3 22 + 0.344828 0.00186 0.391 AGCATTCGTGAACCCACGAT Rv0022c_pal_1 8506_up_of_Rv3186 1 22 + 4.48649 0.00186 0.163 TACCGTCAAAGCACAAAGTACA Rv0022c_pal_1 10041_up_of_Rv3188 1 22 + 4.48649 0.00186 0.163 TACCGTCAAAGCACAAAGTACA Rv0022c_pal_1 4999_down_of_Rv3180c 1 22 + 4.48649 0.00186 0.163 TACCGTCAAAGCACAAAGTACA Rv0022c_pal_1 3360_up_of_Rv3179 1 22 + 4.48649 0.00186 0.163 TACCGTCAAAGCACAAAGTACA Rv0022c_pal_1 13078_down_of_Rv3190c 1 22 + 4.48649 0.00186 0.163 TACCGTCAAAGCACAAAGTACA Rv0022c_pal_1 13078_down_of_Rv3190c 1 22 - 4.48649 0.00186 0.163 TGTACTTTGTGCTTTGACGGTA Rv0022c_pal_1 10041_up_of_Rv3188 1 22 - 4.48649 0.00186 0.163 TGTACTTTGTGCTTTGACGGTA Rv0022c_pal_1 8506_up_of_Rv3186 1 22 - 4.48649 0.00186 0.163 TGTACTTTGTGCTTTGACGGTA Rv0022c_pal_1 4999_down_of_Rv3180c 1 22 - 4.48649 0.00186 0.163 TGTACTTTGTGCTTTGACGGTA Rv0022c_pal_1 3360_up_of_Rv3179 1 22 - 4.48649 0.00186 0.163 TGTACTTTGTGCTTTGACGGTA Rv3830c_nonpal_1 antisense_pyrC_541_to_stop 6 20 + 3.77027 0.00186 0.576 GTGACCTCGGCGGTG Rv0117_nonpal_1 antisense_accA1_595_from_start 9 35 - -11.6154 0.00187 0.204 ACGATACGCTATTCCTGGAGCGGTTTG Rv0117_nonpal_1 sense_accA1_598_from_start 3 29 + -11.6154 0.00187 0.204 ACGATACGCTATTCCTGGAGCGGTTTG Rv0302_pal_1 1662_up_of_Rv2018 2 13 + 6.00735 0.00187 0.249 TATGAATCGGCC Rv0302_pal_1 1662_up_of_Rv2018 2 13 - 6.00735 0.00187 0.249 GGCCGATTCATA Rv0981_nonpal_2 37_up_of_Rv2172c 20 40 - -0.357895 0.00187 0.455 GCTGTAGCCAAATCAACCGCT Rv0981_nonpal_2 sense_mptA_23_from_start 20 40 - -0.357895 0.00187 0.455 GCTGTAGCCAAATCAACCGCT Rv1956_nonpal_1 6723_up_of_Rv3188 18 38 + 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 9760_down_of_Rv3190c 18 38 + 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 5188_up_of_Rv3186 18 38 + 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 1681_down_of_Rv3180c 18 38 + 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 42_up_of_Rv3179 18 38 + 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 5189_up_of_Rv3186 4 24 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 6724_up_of_Rv3188 4 24 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 1682_down_of_Rv3180c 4 24 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 9761_down_of_Rv3190c 4 24 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 43_up_of_Rv3179 4 24 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 6730_up_of_Rv3188 10 30 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 1688_down_of_Rv3180c 10 30 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 5195_up_of_Rv3186 10 30 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 49_up_of_Rv3179 10 30 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv1956_nonpal_1 9767_down_of_Rv3190c 10 30 - 2.13953 0.00188 0.256 CTGATCGGTGTACTTATAACC Rv3676_pal_1 1662_up_of_Rv2018 22 37 + -0.67619 0.00188 0.626 TGAAATTGATACAAGA Rv3676_pal_1 1662_up_of_Rv2018 22 37 - -0.67619 0.00188 0.626 TCTTGTATCAATTTCA Rv0022c_pal_1 antisense_accA1_595_from_start 5 26 + 4.45946 0.00188 0.163 AACACAAACCGCTCCAGGAATA Rv0022c_pal_1 sense_accA1_598_from_start 12 33 + 4.45946 0.00188 0.163 TATTCCTGGAGCGGTTTGTGTT Rv0022c_pal_1 antisense_accA1_595_from_start 5 26 - 4.45946 0.00188 0.163 TATTCCTGGAGCGGTTTGTGTT Rv0022c_pal_1 sense_accA1_598_from_start 12 33 - 4.45946 0.00188 0.163 AACACAAACCGCTCCAGGAATA Rv1404_nonpal_1 4992_down_of_Rv3180c 9 34 - 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 8499_up_of_Rv3186 9 34 - 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 13071_down_of_Rv3190c 9 34 - 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 3353_up_of_Rv3179 9 34 - 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 10034_up_of_Rv3188 9 34 - 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 4999_down_of_Rv3180c 14 39 + 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 8506_up_of_Rv3186 14 39 + 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 10041_up_of_Rv3188 14 39 + 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 13078_down_of_Rv3190c 14 39 + 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1404_nonpal_1 3360_up_of_Rv3179 14 39 + 2.825 0.00189 0.0602 CAAAGTACACCAATCGGTTTACTGTA Rv1473A_nonpal_1 antisense_metA_391_from_start 9 22 + -1.84932 0.00189 0.381 ACCTGGTCACGTAT Rv1473A_nonpal_1 sense_metA_384_from_start 26 39 - -1.84932 0.00189 0.381 ACCTGGTCACGTAT Rv1994c_pal_1 13071_down_of_Rv3190c 12 26 + 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 8499_up_of_Rv3186 12 26 + 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 3353_up_of_Rv3179 12 26 + 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 4992_down_of_Rv3180c 12 26 + 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 10034_up_of_Rv3188 12 26 + 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 8506_up_of_Rv3186 22 36 + 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 10041_up_of_Rv3188 22 36 + 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 3360_up_of_Rv3179 22 36 + 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 13078_down_of_Rv3190c 22 36 + 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 4999_down_of_Rv3180c 22 36 + 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 8499_up_of_Rv3186 12 26 - 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 4992_down_of_Rv3180c 12 26 - 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 13071_down_of_Rv3190c 12 26 - 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 10034_up_of_Rv3188 12 26 - 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 3353_up_of_Rv3179 12 26 - 5.28378 0.0019 0.105 ACCAATCGGTTTACT Rv1994c_pal_1 10041_up_of_Rv3188 22 36 - 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 3360_up_of_Rv3179 22 36 - 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 13078_down_of_Rv3190c 22 36 - 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 4999_down_of_Rv3180c 22 36 - 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv1994c_pal_1 8506_up_of_Rv3186 22 36 - 5.28378 0.0019 0.105 AGTAAACCGATTGGT Rv0678_nonpal_1 sense_metA_384_from_start 2 16 - 5.79688 0.0019 0.13 CGGAAATCTTGAGCC Rv1719_nonpal_2 antisense_pyrC_541_to_stop 3 23 - 1.52941 0.0019 1 GATCACCGCCGAGGTCACCCC Rv2788_pal_2 93_up_of_lpqG 11 31 + 0.364583 0.0019 0.445 GGGCCCGTCGATGCCAGTACC Rv2788_pal_2 93_up_of_lpqG 11 31 - 0.364583 0.0019 0.445 GGTACTGGCATCGACGGGCCC Rv3736_pal_1 antisense_aldA_642_from_start 21 35 + 5.8 0.0019 0.784 AGGTGACGATGTTGA Rv3736_pal_1 antisense_aldA_642_from_start 21 35 - 5.8 0.0019 0.784 TCAACATCGTCACCT Rv3574_nonpal_2 sense_mmpL4_1184_to_stop 11 38 - -34.5385 0.0019 0.397 ATAGCTTCGAATTGGTCTCCAGAAATCA Rv0880_nonpal_1 4_up_of_Rv1049 2 25 + -4.49474 0.0019 0.189 GTAGCTACACGAGTCTGGAGTAAT Rv0880_nonpal_1 7_up_of_Rv1049 13 36 - -4.49474 0.0019 0.189 GTAGCTACACGAGTCTGGAGTAAT Rv0158_nonpal_1 antisense_Rv2963_530_to_stop 3 27 + -8.27358 0.00191 0.382 AGAAGCTCTGCCAGAACGATTCGGG Rv2009_nonpal_1 antisense_Rv1461_559_from_start 4 24 + 1.93671 0.00191 0.279 TATTATCGCCGGCAGGGATTA Rv3849_nonpal_1 antisense_Rv1461_559_from_start 4 15 + 3.36986 0.00191 0.549 TATTATCGCCGG Rv0767c_nonpal_1 sense_fadE7_118_to_stop 26 40 + 5.35714 0.00191 0.445 CCGGTCATCCGGCAC Rv2989_nonpal_1 5195_up_of_Rv3186 5 25 - 2.27632 0.00191 0.662 CGGTGTACTTATAACCGACAC Rv2989_nonpal_1 49_up_of_Rv3179 5 25 - 2.27632 0.00191 0.662 CGGTGTACTTATAACCGACAC Rv2989_nonpal_1 9767_down_of_Rv3190c 5 25 - 2.27632 0.00191 0.662 CGGTGTACTTATAACCGACAC Rv2989_nonpal_1 6730_up_of_Rv3188 5 25 - 2.27632 0.00191 0.662 CGGTGTACTTATAACCGACAC Rv2989_nonpal_1 1688_down_of_Rv3180c 5 25 - 2.27632 0.00191 0.662 CGGTGTACTTATAACCGACAC Rv2009_pal_1 4999_down_of_Rv3180c 7 35 + 2.73723 0.00191 0.142 CAAAGCACAAAGTACACCAATCGGTTTAC Rv2009_pal_1 10041_up_of_Rv3188 7 35 + 2.73723 0.00191 0.142 CAAAGCACAAAGTACACCAATCGGTTTAC Rv2009_pal_1 8506_up_of_Rv3186 7 35 + 2.73723 0.00191 0.142 CAAAGCACAAAGTACACCAATCGGTTTAC Rv2009_pal_1 13078_down_of_Rv3190c 7 35 + 2.73723 0.00191 0.142 CAAAGCACAAAGTACACCAATCGGTTTAC Rv2009_pal_1 3360_up_of_Rv3179 7 35 + 2.73723 0.00191 0.142 CAAAGCACAAAGTACACCAATCGGTTTAC Rv2009_pal_1 10041_up_of_Rv3188 7 35 - 2.73723 0.00191 0.142 GTAAACCGATTGGTGTACTTTGTGCTTTG Rv2009_pal_1 4999_down_of_Rv3180c 7 35 - 2.73723 0.00191 0.142 GTAAACCGATTGGTGTACTTTGTGCTTTG Rv2009_pal_1 8506_up_of_Rv3186 7 35 - 2.73723 0.00191 0.142 GTAAACCGATTGGTGTACTTTGTGCTTTG Rv2009_pal_1 13078_down_of_Rv3190c 7 35 - 2.73723 0.00191 0.142 GTAAACCGATTGGTGTACTTTGTGCTTTG Rv2009_pal_1 3360_up_of_Rv3179 7 35 - 2.73723 0.00191 0.142 GTAAACCGATTGGTGTACTTTGTGCTTTG Rv2021c_nonpal_1 antisense_Rv1461_472_from_start 18 38 - 3.07229 0.00191 0.215 CCAGATCAGAGAGGATCTGGA Rv2011c_pal_1 antisense_mmpL4_1187_to_stop 3 17 + 6.05556 0.00192 0.508 GCTTCGAATTGGTCT Rv2011c_pal_1 antisense_mmpL4_1187_to_stop 3 17 - 6.05556 0.00192 0.508 AGACCAATTCGAAGC Rv2011c_pal_1 sense_mmpL4_1184_to_stop 21 35 + 6.05556 0.00192 0.508 AGACCAATTCGAAGC Rv2011c_pal_1 sense_mmpL4_1184_to_stop 21 35 - 6.05556 0.00192 0.508 GCTTCGAATTGGTCT Rv0023_pal_1 antisense_Rv0370c_389_from_start 33 40 + 6.21519 0.00192 0.474 CGGTGCCG Rv0023_pal_1 antisense_Rv0370c_389_from_start 33 40 - 6.21519 0.00192 0.474 CGGCACCG Rv1473A_nonpal_1 antisense_frdA_787_from_start 1 14 - -1.91781 0.00193 0.381 TTACGACCTCGGCA Rv2374c_nonpal_1 1662_up_of_Rv2018 3 30 - -7.5 0.00193 0.287 TCAATTTCACTGGAGAAGGCCGATTCAT Rv3681c_nonpal_1 antisense_Rv2963_530_to_stop 10 29 + 2.07595 0.00193 0.226 CTGCCAGAACGATTCGGGTA Rv3681c_nonpal_1 sense_Rv2963_537_to_stop 19 38 - 2.07595 0.00193 0.226 CTGCCAGAACGATTCGGGTA Rv2021c_nonpal_1 antisense_frdA_787_from_start 3 23 - 3.04819 0.00193 0.215 CCTCCAGGATTACGACCTCGG Rv0653c_nonpal_1 antisense_Rv1461_559_from_start 21 39 + 2.34177 0.00194 0.133 ATTACTGTACCGAAATATT Rv0653c_nonpal_1 sense_Rv1461_552_from_start 9 27 - 2.34177 0.00194 0.133 ATTACTGTACCGAAATATT Rv2374c_nonpal_1 sense_Rv1461_552_from_start 8 35 - -7.52885 0.00194 0.287 CGGCAGGGATTACTGTACCGAAATATTC Rv2374c_nonpal_1 antisense_Rv1461_559_from_start 13 40 + -7.52885 0.00194 0.287 CGGCAGGGATTACTGTACCGAAATATTC Rv0023_nonpal_1 sense_Rv1461_552_from_start 2 22 + 5.21127 0.00194 0.131 TTCAAGGAATATTTCGGTACA Rv1359_nonpal_1 antisense_Rv1461_559_from_start 13 40 + -9.39423 0.00195 0.168 CGGCAGGGATTACTGTACCGAAATATTC Rv1359_nonpal_1 sense_Rv1461_552_from_start 8 35 - -9.39423 0.00195 0.168 CGGCAGGGATTACTGTACCGAAATATTC Rv2009_nonpal_1 sense_gca_460_from_start 8 28 + 1.87342 0.00195 0.279 ACATGCTGGCGTATCAATATC Rv2009_nonpal_1 antisense_gca_467_from_start 20 40 - 1.87342 0.00195 0.279 ACATGCTGGCGTATCAATATC Rv2250c_pal_1 sense_Rv0674_10_to_stop 21 27 + 6.83824 0.00195 0.497 GGTGACA Rv2250c_pal_1 sense_Rv0674_10_to_stop 21 27 - 6.83824 0.00195 0.497 TGTCACC Rv2250c_pal_1 10_up_of_Rv1866 32 38 + 6.83824 0.00195 0.497 GGTGACA Rv2250c_pal_1 10_up_of_Rv1866 32 38 - 6.83824 0.00195 0.497 TGTCACC Rv2021c_nonpal_1 antisense_cobK_311_from_start 7 27 + 3.01205 0.00195 0.215 CGATGATGGCGGTACCGGGAT Rv1404_nonpal_1 1662_up_of_Rv2018 9 34 + 2.725 0.00196 0.0602 CGGCCTTCTCCAGTGAAATTGATACA Rv0023_nonpal_1 93_up_of_lpqG 2 22 + 5.19718 0.00196 0.131 CGCATTGTAGGGCCCGTCGAT Rv1674c_nonpal_1 sense_mptA_23_from_start 15 32 + -4.53191 0.00196 0.357 GCTCCAGCGGTTGATTTG Rv1674c_nonpal_1 37_up_of_Rv2172c 15 32 + -4.53191 0.00196 0.357 GCTCCAGCGGTTGATTTG Rv0465c_nonpal_2 sense_Rv1461_552_from_start 7 34 - -5.63218 0.00196 0.762 GGCAGGGATTACTGTACCGAAATATTCC Rv1990c_nonpal_1 sense_Rv0674_10_to_stop 17 27 - 5.90769 0.00197 1 TGTCACCTCCA Rv0691c_nonpal_2 sense_Rv0674_10_to_stop 15 38 - -35.0865 0.00197 0.63 CAGATCACTCATGTCACCTCCAGG Rv0576_nonpal_1 sense_cobK_304_from_start 10 35 + 2.71591 0.00197 0.105 CCCGCCGTGGGATCCCGGTACCGCCA Rv0576_nonpal_1 antisense_cobK_311_from_start 13 38 - 2.71591 0.00197 0.105 CCCGCCGTGGGATCCCGGTACCGCCA Rv1353c_pal_1 sense_fadE7_118_to_stop 3 13 + 6.54545 0.00197 0.334 GCAACGGGATA Rv1353c_pal_1 sense_fadE7_118_to_stop 3 13 - 6.54545 0.00197 0.334 TATCCCGTTGC Rv1353c_pal_1 antisense_fadE7_121_to_stop 25 35 + 6.54545 0.00197 0.334 TATCCCGTTGC Rv1353c_pal_1 antisense_fadE7_121_to_stop 25 35 - 6.54545 0.00197 0.334 GCAACGGGATA Rv1994c_nonpal_1 5188_up_of_Rv3186 17 31 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 42_up_of_Rv3179 17 31 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 1681_down_of_Rv3180c 17 31 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 9760_down_of_Rv3190c 17 31 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 6723_up_of_Rv3188 17 31 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 6717_up_of_Rv3188 23 37 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 5182_up_of_Rv3186 23 37 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 9754_down_of_Rv3190c 23 37 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 36_up_of_Rv3179 23 37 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 1675_down_of_Rv3180c 23 37 + 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 6724_up_of_Rv3188 11 25 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 43_up_of_Rv3179 11 25 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 5189_up_of_Rv3186 11 25 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 9761_down_of_Rv3190c 11 25 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 1682_down_of_Rv3180c 11 25 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 5195_up_of_Rv3186 17 31 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 1688_down_of_Rv3180c 17 31 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 49_up_of_Rv3179 17 31 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 9767_down_of_Rv3190c 17 31 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv1994c_nonpal_1 6730_up_of_Rv3188 17 31 - 5.30137 0.00197 0.148 ACTGATCGGTGTACT Rv3488_nonpal_1 93_up_of_lpqG 13 26 + -0.161765 0.00198 0.221 GCCCGTCGATGCCA Rv1846c_pal_1 sense_mptA_23_from_start 3 17 + 0.715789 0.00198 0.239 ACTCCGAGCCATGCT Rv1846c_pal_1 37_up_of_Rv2172c 3 17 + 0.715789 0.00198 0.239 ACTCCGAGCCATGCT Rv1846c_pal_1 37_up_of_Rv2172c 3 17 - 0.715789 0.00198 0.239 AGCATGGCTCGGAGT Rv1846c_pal_1 sense_mptA_23_from_start 3 17 - 0.715789 0.00198 0.239 AGCATGGCTCGGAGT Rv0273c_nonpal_1 1662_up_of_Rv2018 14 38 - 4.1375 0.00198 0.54 ATCTTGTATCAATTTCACTGGAGAA Rv1473A_nonpal_2 sense_metA_384_from_start 16 23 + -0.315068 0.00198 0.17 GCTGATCT Rv1473A_nonpal_2 antisense_metA_391_from_start 25 32 - -0.315068 0.00198 0.17 GCTGATCT Rv3246c_nonpal_1 sense_Rv1461_475_from_start 5 24 + 3.06173 0.00198 0.173 TCAGAGAGGATCTGGAGGCT Rv3246c_nonpal_1 antisense_Rv1461_472_from_start 14 33 - 3.06173 0.00198 0.173 TCAGAGAGGATCTGGAGGCT Rv0135c_nonpal_1 antisense_metA_391_from_start 16 26 + 3.46875 0.00199 0.34 CACGTATCGAG Rv0135c_nonpal_1 sense_metA_384_from_start 22 32 - 3.46875 0.00199 0.34 CACGTATCGAG Rv1404_nonpal_1 sense_pks6_424_from_start 12 37 - 2.675 0.00199 0.0602 TGAACCCACGATCTGGATACGCTGTT Rv1404_nonpal_1 sense_pks6_423_from_start 12 37 - 2.675 0.00199 0.0602 TGAACCCACGATCTGGATACGCTGTT Rv1404_nonpal_1 antisense_pks6_430_from_start 11 36 + 2.675 0.00199 0.0602 TGAACCCACGATCTGGATACGCTGTT Rv1404_nonpal_1 antisense_pks6_431_from_start 11 36 + 2.675 0.00199 0.0602 TGAACCCACGATCTGGATACGCTGTT Rv3830c_nonpal_1 antisense_gca_467_from_start 10 24 - 3.58108 0.00199 0.576 ATATCACAAGTCTTA Rv3830c_nonpal_1 sense_gca_460_from_start 24 38 + 3.58108 0.00199 0.576 ATATCACAAGTCTTA Rv2887_pal_1 10034_up_of_Rv3188 13 27 + 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 3353_up_of_Rv3179 13 27 + 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 4992_down_of_Rv3180c 13 27 + 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 13071_down_of_Rv3190c 13 27 + 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 8499_up_of_Rv3186 13 27 + 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 13078_down_of_Rv3190c 21 35 + 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 4999_down_of_Rv3180c 21 35 + 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 10041_up_of_Rv3188 21 35 + 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 3360_up_of_Rv3179 21 35 + 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 8506_up_of_Rv3186 21 35 + 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 13071_down_of_Rv3190c 13 27 - 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 8499_up_of_Rv3186 13 27 - 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 3353_up_of_Rv3179 13 27 - 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 10034_up_of_Rv3188 13 27 - 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 4992_down_of_Rv3180c 13 27 - 3.5125 0.00199 0.337 CACCAATCGGTTTAC Rv2887_pal_1 13078_down_of_Rv3190c 21 35 - 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 4999_down_of_Rv3180c 21 35 - 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 3360_up_of_Rv3179 21 35 - 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 10041_up_of_Rv3188 21 35 - 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv2887_pal_1 8506_up_of_Rv3186 21 35 - 3.5125 0.00199 0.337 GTAAACCGATTGGTG Rv0678_nonpal_1 sense_pyrC_548_to_stop 15 29 + 5.70312 0.00199 0.133 AGGGTATTTCGATCA Rv0678_nonpal_1 antisense_pyrC_541_to_stop 19 33 - 5.70312 0.00199 0.133 AGGGTATTTCGATCA Rv1719_nonpal_1 sense_Rv2963_537_to_stop 4 20 - 4.71053 0.002 1 TACCCATGCCGCGATAG Rv3574_nonpal_1 sense_pks9_325_to_stop 23 37 - 3.01471 0.002 0.255 GCAAACCGATAGCCA Rv3557c_nonpal_1 sense_mmpL4_1184_to_stop 18 37 + -11.9135 0.002 0.338 TGGAGACCAATTCGAAGCTA Rv3557c_nonpal_1 antisense_mmpL4_1187_to_stop 1 20 - -11.9135 0.002 0.338 TGGAGACCAATTCGAAGCTA Rv1353c_nonpal_2 antisense_Rv0370c_389_from_start 16 36 - -31.4872 0.002 0.252 ACCGCGGACCGACCCCTCCAG Rv1816_pal_1 37_up_of_Rv2172c 7 19 + 5.94483 0.002 0.144 CGAGCCATGCTCC Rv1816_pal_1 sense_mptA_23_from_start 7 19 + 5.94483 0.002 0.144 CGAGCCATGCTCC Rv1816_pal_1 sense_mptA_23_from_start 7 19 - 5.94483 0.002 0.144 GGAGCATGGCTCG Rv1816_pal_1 37_up_of_Rv2172c 7 19 - 5.94483 0.002 0.144 GGAGCATGGCTCG Rv0275c_nonpal_1 sense_Rv2038c_183_from_start 5 30 - -9.90385 0.002 0.142 CGATCCGGATACGCCCACAGTCCAGC Rv2324_nonpal_1 37_up_of_Rv2172c 13 31 - 5.65217 0.00201 0.206 AAATCAACCGCTGGAGCAT Rv2324_nonpal_1 sense_mptA_23_from_start 13 31 - 5.65217 0.00201 0.206 AAATCAACCGCTGGAGCAT Rv3681c_nonpal_1 sense_fadE7_118_to_stop 6 25 + 1.94937 0.00201 0.226 ACGGGATATCGCTGGAGTAC Rv3681c_nonpal_1 antisense_fadE7_121_to_stop 13 32 - 1.94937 0.00201 0.226 ACGGGATATCGCTGGAGTAC Rv3574_nonpal_2 10_up_of_Rv1866 12 39 - -34.8632 0.00201 0.397 GTGTCACCATATCGGTGCCTCCAGCAGA Rv0324_pal_1 1662_up_of_Rv2018 9 20 + 3.12346 0.00201 0.555 CGGCCTTCTCCA Rv0324_pal_1 1662_up_of_Rv2018 9 20 - 3.12346 0.00201 0.555 TGGAGAAGGCCG Rv1473A_pal_1 sense_metA_384_from_start 2 13 + 4.11429 0.00202 0.398 GGCTCAAGATTT Rv1473A_pal_1 sense_metA_384_from_start 2 13 - 4.11429 0.00202 0.398 AAATCTTGAGCC Rv0767c_nonpal_2 antisense_Rv3282_217_to_stop 8 28 - 2.6962 0.00202 0.379 TCCGATCTGGAGGCTTACCTG Rv0767c_nonpal_2 447_down_of_accE5 8 28 - 2.6962 0.00202 0.379 TCCGATCTGGAGGCTTACCTG Rv0023_pal_2 sense_pks9_325_to_stop 6 21 + 5.09091 0.00202 0.292 ACGCAATCGTCTCCAG Rv0023_pal_2 sense_pks9_325_to_stop 6 21 - 5.09091 0.00202 0.292 CTGGAGACGATTGCGT Rv3849_nonpal_1 4_up_of_Rv1049 2 13 - 3.12329 0.00202 0.549 TCGTGTAGCTAC Rv3849_nonpal_1 7_up_of_Rv1049 25 36 + 3.12329 0.00202 0.549 TCGTGTAGCTAC Rv2989_nonpal_2 antisense_gca_467_from_start 20 34 + 0.241379 0.00202 0.991 GATATTGATACGCCA Rv2989_nonpal_2 sense_gca_460_from_start 14 28 - 0.241379 0.00202 0.991 GATATTGATACGCCA Rv3765c_nonpal_1 antisense_pyrC_541_to_stop 10 29 - -5.2 0.00202 0.484 TATTTCGATCACCGCCGAGG Rv3765c_nonpal_1 sense_pyrC_548_to_stop 19 38 + -5.2 0.00202 0.484 TATTTCGATCACCGCCGAGG Rv1219c_pal_1 6723_up_of_Rv3188 16 24 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 42_up_of_Rv3179 16 24 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 9760_down_of_Rv3190c 16 24 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 1681_down_of_Rv3180c 16 24 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 5188_up_of_Rv3186 16 24 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 1682_down_of_Rv3180c 18 26 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 43_up_of_Rv3179 18 26 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5189_up_of_Rv3186 18 26 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 9761_down_of_Rv3190c 18 26 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 6724_up_of_Rv3188 18 26 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 6717_up_of_Rv3188 22 30 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 36_up_of_Rv3179 22 30 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 5182_up_of_Rv3186 22 30 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 9754_down_of_Rv3190c 22 30 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 1675_down_of_Rv3180c 22 30 + 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 6723_up_of_Rv3188 16 24 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 42_up_of_Rv3179 16 24 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 1688_down_of_Rv3180c 24 32 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 1681_down_of_Rv3180c 16 24 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5195_up_of_Rv3186 24 32 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 9767_down_of_Rv3190c 24 32 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5188_up_of_Rv3186 16 24 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 9760_down_of_Rv3190c 16 24 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 49_up_of_Rv3179 24 32 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 6730_up_of_Rv3188 24 32 + 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5189_up_of_Rv3186 18 26 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 1682_down_of_Rv3180c 18 26 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 9761_down_of_Rv3190c 18 26 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 43_up_of_Rv3179 18 26 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 6724_up_of_Rv3188 18 26 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 6717_up_of_Rv3188 22 30 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5182_up_of_Rv3186 22 30 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 36_up_of_Rv3179 22 30 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 9754_down_of_Rv3190c 22 30 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 1675_down_of_Rv3180c 22 30 - 5.18987 0.00202 0.194 CGATCAGTA Rv1219c_pal_1 5195_up_of_Rv3186 24 32 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 1688_down_of_Rv3180c 24 32 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 49_up_of_Rv3179 24 32 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 9767_down_of_Rv3190c 24 32 - 5.18987 0.00202 0.194 TACTGATCG Rv1219c_pal_1 6730_up_of_Rv3188 24 32 - 5.18987 0.00202 0.194 TACTGATCG Rv0465c_nonpal_2 antisense_cobK_311_from_start 5 32 + -5.75862 0.00202 0.762 CGCGATGATGGCGGTACCGGGATCCCAC Rv0880_nonpal_1 8506_up_of_Rv3186 4 27 + -4.75789 0.00203 0.189 CGTCAAAGCACAAAGTACACCAAT Rv0880_nonpal_1 4999_down_of_Rv3180c 4 27 + -4.75789 0.00203 0.189 CGTCAAAGCACAAAGTACACCAAT Rv0880_nonpal_1 13078_down_of_Rv3190c 4 27 + -4.75789 0.00203 0.189 CGTCAAAGCACAAAGTACACCAAT Rv0880_nonpal_1 10041_up_of_Rv3188 4 27 + -4.75789 0.00203 0.189 CGTCAAAGCACAAAGTACACCAAT Rv0880_nonpal_1 3360_up_of_Rv3179 4 27 + -4.75789 0.00203 0.189 CGTCAAAGCACAAAGTACACCAAT Rv0023_pal_2 sense_metA_384_from_start 14 29 + 5.07792 0.00203 0.292 CCGCTGATCTCGATAC Rv0023_pal_2 antisense_metA_391_from_start 19 34 + 5.07792 0.00203 0.292 GTATCGAGATCAGCGG Rv0023_pal_2 sense_metA_384_from_start 14 29 - 5.07792 0.00203 0.292 GTATCGAGATCAGCGG Rv0023_pal_2 antisense_metA_391_from_start 19 34 - 5.07792 0.00203 0.292 CCGCTGATCTCGATAC Rv2359_nonpal_1 sense_pks9_325_to_stop 2 29 + -17.9904 0.00203 0.137 AACTACGCAATCGTCTCCAGATGGCTAT Rv0339c_nonpal_1 sense_bioB_253_to_stop 18 31 + 4.73563 0.00203 0.688 GGAGGTAATGCCGG Rv3249c_pal_2 93_up_of_lpqG 8 22 + 3.21622 0.00203 0.15 GTAGGGCCCGTCGAT Rv3249c_pal_2 93_up_of_lpqG 8 22 - 3.21622 0.00203 0.15 ATCGACGGGCCCTAC Rv2009_nonpal_1 antisense_Rv1461_559_from_start 20 40 + 1.73418 0.00203 0.279 GATTACTGTACCGAAATATTC Rv2009_nonpal_1 sense_Rv1461_552_from_start 8 28 - 1.73418 0.00203 0.279 GATTACTGTACCGAAATATTC Rv0818_nonpal_1 antisense_fadE7_121_to_stop 18 38 - -1.97872 0.00204 0.388 GCGGCAACGGGATATCGCTGG Rv0691c_nonpal_2 antisense_Rv1461_416_from_start 4 27 - -35.3077 0.00205 0.63 AGTAGCTGGAGTAGCCGCACAATA Rv0691c_pal_1 10_up_of_Rv1866 29 40 + 5.71014 0.00205 0.116 TATGGTGACACG Rv0691c_pal_1 10_up_of_Rv1866 29 40 - 5.71014 0.00205 0.116 CGTGTCACCATA Rv1816_nonpal_1 9761_down_of_Rv3190c 9 25 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 43_up_of_Rv3179 9 25 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 6724_up_of_Rv3188 9 25 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 1682_down_of_Rv3180c 9 25 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 5189_up_of_Rv3186 9 25 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 6730_up_of_Rv3188 15 31 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 1688_down_of_Rv3180c 15 31 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 5195_up_of_Rv3186 15 31 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 9767_down_of_Rv3190c 15 31 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 49_up_of_Rv3179 15 31 + 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 1681_down_of_Rv3180c 17 33 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 6723_up_of_Rv3188 17 33 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 42_up_of_Rv3179 17 33 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 5188_up_of_Rv3186 17 33 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 9760_down_of_Rv3190c 17 33 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 9754_down_of_Rv3190c 23 39 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 1675_down_of_Rv3180c 23 39 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 6717_up_of_Rv3188 23 39 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 36_up_of_Rv3179 23 39 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv1816_nonpal_1 5182_up_of_Rv3186 23 39 - 5 0.00205 0.191 TAAGTACACCGATCAGT Rv0047c_nonpal_1 antisense_accA1_595_from_start 26 40 + 5.29688 0.00205 0.428 AGCGTATCGTCCCCG Rv0023_pal_2 7_up_of_Rv1049 7 22 + 5.05195 0.00205 0.292 TTGCCCATTACTCCAG Rv0023_pal_2 4_up_of_Rv1049 16 31 + 5.05195 0.00205 0.292 CTGGAGTAATGGGCAA Rv0023_pal_2 7_up_of_Rv1049 7 22 - 5.05195 0.00205 0.292 CTGGAGTAATGGGCAA Rv0023_pal_2 4_up_of_Rv1049 16 31 - 5.05195 0.00205 0.292 TTGCCCATTACTCCAG Rv1556_nonpal_1 antisense_Rv1461_416_from_start 24 40 - -2.95745 0.00206 0.6 AGAAGCAGAGATTAGTA Rv2250c_nonpal_2 4_up_of_Rv1049 10 37 + -50.6752 0.00206 0.456 ACGAGTCTGGAGTAATGGGCAAAGGGGC Rv2250c_nonpal_2 7_up_of_Rv1049 1 28 - -50.6752 0.00206 0.456 ACGAGTCTGGAGTAATGGGCAAAGGGGC Rv0047c_pal_1 sense_gca_460_from_start 13 24 + 5.72727 0.00206 0.345 CTGGCGTATCAA Rv0047c_pal_1 antisense_gca_467_from_start 24 35 + 5.72727 0.00206 0.345 TTGATACGCCAG Rv0047c_pal_1 sense_gca_460_from_start 13 24 - 5.72727 0.00206 0.345 TTGATACGCCAG Rv0047c_pal_1 antisense_gca_467_from_start 24 35 - 5.72727 0.00206 0.345 CTGGCGTATCAA Rv0967_pal_2 antisense_fadE7_121_to_stop 30 40 + -0.0506329 0.00207 0.887 CGTTGCCGCCC Rv0967_pal_2 antisense_fadE7_121_to_stop 30 40 - -0.0506329 0.00207 0.887 GGGCGGCAACG Rv0302_nonpal_1 antisense_frdA_787_from_start 20 34 + 4.91304 0.00208 0.311 GAGGTAGCGGTAGCC Rv1353c_pal_1 sense_pks9_325_to_stop 26 36 + 6.40909 0.00208 0.334 CTATCGGTTTG Rv1353c_pal_1 sense_pks9_325_to_stop 26 36 - 6.40909 0.00208 0.334 CAAACCGATAG Rv3830c_pal_2 antisense_aldA_642_from_start 22 30 + 6.4026 0.00208 1 GGTGACGAT Rv3830c_pal_2 antisense_aldA_642_from_start 22 30 - 6.4026 0.00208 1 ATCGTCACC Rv0135c_nonpal_2 sense_accA1_598_from_start 12 39 + -20.0638 0.00208 0.464 TATTCCTGGAGCGGTTTGTGTTGCGGCC Rv0023_nonpal_1 antisense_aldA_642_from_start 16 36 + 5.07042 0.00209 0.131 GCTGGAGGTGACGATGTTGAC Rv0047c_nonpal_2 447_down_of_accE5 11 38 - -33.7265 0.00209 0.249 ACCTTCGGCCTCCGATCTGGAGGCTTAC Rv0047c_nonpal_2 antisense_Rv3282_217_to_stop 11 38 - -33.7265 0.00209 0.249 ACCTTCGGCCTCCGATCTGGAGGCTTAC Rv3849_pal_1 antisense_Rv2963_530_to_stop 9 16 + 6.77922 0.00209 1 TCTGCCAG Rv3849_pal_1 antisense_Rv2963_530_to_stop 9 16 - 6.77922 0.00209 1 CTGGCAGA Rv3849_pal_1 sense_Rv2963_537_to_stop 32 39 + 6.77922 0.00209 1 CTGGCAGA Rv3849_pal_1 sense_Rv2963_537_to_stop 32 39 - 6.77922 0.00209 1 TCTGCCAG Rv3574_nonpal_1 sense_pks9_325_to_stop 1 15 - 2.85294 0.00209 0.255 ACGATTGCGTAGTTC Rv0691c_pal_1 49_up_of_Rv3179 4 15 + 5.65217 0.0021 0.116 AGTGTCGGTTAT Rv0691c_pal_1 9767_down_of_Rv3190c 4 15 + 5.65217 0.0021 0.116 AGTGTCGGTTAT Rv0691c_pal_1 5195_up_of_Rv3186 4 15 + 5.65217 0.0021 0.116 AGTGTCGGTTAT Rv0691c_pal_1 1688_down_of_Rv3180c 4 15 + 5.65217 0.0021 0.116 AGTGTCGGTTAT Rv0691c_pal_1 6730_up_of_Rv3188 4 15 + 5.65217 0.0021 0.116 AGTGTCGGTTAT Rv0691c_pal_1 49_up_of_Rv3179 4 15 - 5.65217 0.0021 0.116 ATAACCGACACT Rv0691c_pal_1 9767_down_of_Rv3190c 4 15 - 5.65217 0.0021 0.116 ATAACCGACACT Rv0691c_pal_1 1688_down_of_Rv3180c 4 15 - 5.65217 0.0021 0.116 ATAACCGACACT Rv0691c_pal_1 6730_up_of_Rv3188 4 15 - 5.65217 0.0021 0.116 ATAACCGACACT Rv0691c_pal_1 5195_up_of_Rv3186 4 15 - 5.65217 0.0021 0.116 ATAACCGACACT Rv2989_nonpal_2 antisense_pyrC_541_to_stop 5 19 + 0.103448 0.0021 0.991 GGTGACCTCGGCGGT Rv2359_pal_1 sense_rocA_797_to_stop 12 32 + -10.8476 0.0021 0.143 GGGTGGGTACCAATATCGGCC Rv2359_pal_1 antisense_rocA_790_to_stop 16 36 + -10.8476 0.0021 0.143 GGCCGATATTGGTACCCACCC Rv2359_pal_1 sense_rocA_797_to_stop 12 32 - -10.8476 0.0021 0.143 GGCCGATATTGGTACCCACCC Rv2359_pal_1 antisense_rocA_790_to_stop 16 36 - -10.8476 0.0021 0.143 GGGTGGGTACCAATATCGGCC Rv2011c_pal_1 sense_pks9_325_to_stop 26 40 + 5.88889 0.0021 0.508 CTATCGGTTTGCCCG Rv2011c_pal_1 sense_pks9_325_to_stop 26 40 - 5.88889 0.0021 0.508 CGGGCAAACCGATAG Rv0273c_nonpal_2 sense_pks9_325_to_stop 15 40 + -38.3459 0.0021 0.354 TCTCCAGATGGCTATCGGTTTGCCCG Rv0158_nonpal_1 sense_pyrC_548_to_stop 1 25 + -8.71698 0.00211 0.39 ATGGGCTAAGGACCAGGGTATTTCG Rv0653c_nonpal_1 1662_up_of_Rv2018 15 33 - 2.07595 0.00211 0.142 GTATCAATTTCACTGGAGA Rv2021c_pal_1 antisense_cobK_311_from_start 5 19 + 5.94253 0.00211 0.784 CGCGATGATGGCGGT Rv2021c_pal_1 antisense_cobK_311_from_start 5 19 - 5.94253 0.00211 0.784 ACCGCCATCATCGCG Rv1353c_nonpal_1 sense_Rv2038c_183_from_start 9 23 - 5.80303 0.00211 0.201 GATACGCCCACAGTC Rv0602c_pal_1 sense_Rv1461_475_from_start 31 38 + 1.92405 0.00212 0.135 GTCATATT Rv0602c_pal_1 sense_Rv1461_475_from_start 31 38 - 1.92405 0.00212 0.135 AATATGAC Rv3488_nonpal_2 antisense_frdA_787_from_start 13 40 - -28.9468 0.00213 0.177 AAAGACGGCTACCGCTACCTCCAGGATT Rv2887_nonpal_1 sense_pks9_325_to_stop 23 37 - 1.5625 0.00213 0.519 GCAAACCGATAGCCA Rv2034_pal_1 antisense_Rv0370c_389_from_start 2 17 + 2.45 0.00213 0.501 ATCGATGAGCAGCACT Rv2034_pal_1 antisense_Rv0370c_389_from_start 2 17 - 2.45 0.00213 0.501 AGTGCTGCTCATCGAT Rv0023_pal_2 sense_mmpL4_1184_to_stop 7 22 + 4.96104 0.00213 0.292 TTGATGATTTCTGGAG Rv0023_pal_2 antisense_mmpL4_1187_to_stop 16 31 + 4.96104 0.00213 0.292 CTCCAGAAATCATCAA Rv0023_pal_2 sense_mmpL4_1184_to_stop 7 22 - 4.96104 0.00213 0.292 CTCCAGAAATCATCAA Rv0023_pal_2 antisense_mmpL4_1187_to_stop 16 31 - 4.96104 0.00213 0.292 TTGATGATTTCTGGAG Rv1049_pal_1 sense_mptA_23_from_start 4 18 + 4.54667 0.00214 1 CTCCGAGCCATGCTC Rv1049_pal_1 37_up_of_Rv2172c 4 18 + 4.54667 0.00214 1 CTCCGAGCCATGCTC Rv1049_pal_1 37_up_of_Rv2172c 4 18 - 4.54667 0.00214 1 GAGCATGGCTCGGAG Rv1049_pal_1 sense_mptA_23_from_start 4 18 - 4.54667 0.00214 1 GAGCATGGCTCGGAG Rv3246c_pal_1 antisense_metA_391_from_start 14 29 + 5.30488 0.00214 0.104 GTCACGTATCGAGATC Rv3246c_pal_1 sense_metA_384_from_start 19 34 + 5.30488 0.00214 0.104 GATCTCGATACGTGAC Rv3246c_pal_1 antisense_metA_391_from_start 14 29 - 5.30488 0.00214 0.104 GATCTCGATACGTGAC Rv3246c_pal_1 sense_metA_384_from_start 19 34 - 5.30488 0.00214 0.104 GTCACGTATCGAGATC Rv0880_nonpal_1 sense_metA_384_from_start 7 30 + -4.97895 0.00214 0.189 AAGATTTCCGCTGATCTCGATACG Rv2989_nonpal_1 sense_Rv2038c_183_from_start 14 34 + 1.84211 0.00214 0.662 TGGGCGTATCCGGATCGGCGA Rv0273c_pal_1 antisense_frdA_787_from_start 3 18 + 3.7125 0.00214 0.442 CCGAGGTCGTAATCCT Rv0273c_pal_1 antisense_frdA_787_from_start 3 18 - 3.7125 0.00214 0.442 AGGATTACGACCTCGG Rv2250c_nonpal_1 antisense_frdA_787_from_start 7 16 + 5.34783 0.00215 0.274 GGTCGTAATC Rv0494_nonpal_2 antisense_Rv0370c_389_from_start 14 28 + -3.95789 0.00215 1 CACTGGAGGGGTCGG Rv0465c_nonpal_1 antisense_aldA_642_from_start 14 37 - -12.8276 0.00215 0.411 TGTCAACATCGTCACCTCCAGCAG Rv3133c_nonpal_1 antisense_aldA_642_from_start 23 37 - 5.42029 0.00215 0.336 TGTCAACATCGTCAC Rv3416_nonpal_1 sense_treZ_467_to_stop 6 30 + -4.4433 0.00215 0.484 GAGTGGGGGGCCTCCAGCCCGTTTC Rv3416_nonpal_1 877_up_of_treZ 6 30 + -4.4433 0.00215 0.484 GAGTGGGGGGCCTCCAGCCCGTTTC Rv3416_nonpal_1 880_up_of_treZ 8 32 - -4.4433 0.00215 0.484 GAGTGGGGGGCCTCCAGCCCGTTTC Rv3416_nonpal_1 antisense_treY_785_to_stop 8 32 - -4.4433 0.00215 0.484 GAGTGGGGGGCCTCCAGCCCGTTTC Rv3416_nonpal_1 antisense_treZ_470_to_stop 8 32 - -4.4433 0.00215 0.484 GAGTGGGGGGCCTCCAGCCCGTTTC Rv0023_nonpal_1 antisense_frdA_787_from_start 20 40 + 5 0.00216 0.131 GAGGTAGCGGTAGCCGTCTTT Rv3066_nonpal_1 antisense_Rv1461_416_from_start 19 38 + 2.05747 0.00216 0.916 CCAGCTACTAATCTCTGCTT Rv2324_nonpal_1 antisense_Rv2963_530_to_stop 12 30 + 5.50725 0.00217 0.207 GCCAGAACGATTCGGGTAC Rv2324_nonpal_1 sense_Rv2963_537_to_stop 18 36 - 5.50725 0.00217 0.207 GCCAGAACGATTCGGGTAC Rv0324_nonpal_1 antisense_Rv0370c_389_from_start 4 11 + -1.79412 0.00217 0.191 CGATGAGC Rv1674c_pal_1 37_up_of_Rv2172c 19 40 + 2.03125 0.00217 0.103 CAGCGGTTGATTTGGCTACAGC Rv1674c_pal_1 sense_mptA_23_from_start 19 40 + 2.03125 0.00217 0.103 CAGCGGTTGATTTGGCTACAGC Rv1674c_pal_1 37_up_of_Rv2172c 19 40 - 2.03125 0.00217 0.103 GCTGTAGCCAAATCAACCGCTG Rv1674c_pal_1 sense_mptA_23_from_start 19 40 - 2.03125 0.00217 0.103 GCTGTAGCCAAATCAACCGCTG Rv1049_nonpal_2 sense_Rv2038c_183_from_start 26 40 + 3.77333 0.00217 0.229 GATCGGCGAGCGCGA Rv3557c_pal_1 sense_PE_PGRS54_112_from_start 17 30 + -4.17308 0.00217 0.244 CGCAGGTGCTGGCT Rv3557c_pal_1 sense_PE_PGRS57_112_from_start 17 30 + -4.17308 0.00217 0.244 CGCAGGTGCTGGCT Rv3557c_pal_1 sense_PE_PGRS54_112_from_start 17 30 - -4.17308 0.00217 0.244 AGCCAGCACCTGCG Rv3557c_pal_1 sense_PE_PGRS57_112_from_start 17 30 - -4.17308 0.00217 0.244 AGCCAGCACCTGCG Rv0465c_pal_2 antisense_Rv3282_217_to_stop 3 10 + 5.5443 0.00218 0.957 CTGGCCAG Rv0465c_pal_2 447_down_of_accE5 3 10 + 5.5443 0.00218 0.957 CTGGCCAG Rv0465c_pal_2 447_down_of_accE5 3 10 - 5.5443 0.00218 0.957 CTGGCCAG Rv0465c_pal_2 antisense_Rv3282_217_to_stop 3 10 - 5.5443 0.00218 0.957 CTGGCCAG Rv1990c_pal_1 antisense_aldA_642_from_start 25 39 + 5.89706 0.00218 1 GACGATGTTGACAAC Rv1990c_pal_1 antisense_aldA_642_from_start 25 39 - 5.89706 0.00218 1 GTTGTCAACATCGTC Rv3246c_nonpal_1 antisense_gca_467_from_start 10 29 + 2.79012 0.00218 0.173 TAAGACTTGTGATATTGATA Rv3246c_nonpal_1 sense_gca_460_from_start 19 38 - 2.79012 0.00218 0.173 TAAGACTTGTGATATTGATA Rv3249c_pal_1 sense_bioB_253_to_stop 7 18 + 5.90769 0.00218 0.329 TTCGCCGACCTG Rv3249c_pal_1 sense_bioB_253_to_stop 7 18 - 5.90769 0.00218 0.329 CAGGTCGGCGAA Rv0465c_nonpal_2 antisense_frdA_787_from_start 1 28 + -6.06897 0.00218 0.762 TGCCGAGGTCGTAATCCTGGAGGTAGCG Rv0880_nonpal_1 antisense_PPE24_1570_to_stop 4 27 - -5.06316 0.00218 0.189 ATCACAATCGGTGGCTTTAGTCTA Rv0880_nonpal_1 antisense_PPE24_1345_to_stop 4 27 - -5.06316 0.00218 0.189 ATCACAATCGGTGGCTTTAGTCTA Rv0880_nonpal_1 antisense_PPE24_1270_to_stop 4 27 - -5.06316 0.00218 0.189 ATCACAATCGGTGGCTTTAGTCTA Rv2324_nonpal_1 sense_accA1_598_from_start 20 38 - 5.49275 0.00218 0.207 GCCGCAACACAAACCGCTC Rv2009_nonpal_1 877_up_of_treZ 10 30 + 1.50633 0.00218 0.279 GGGGGGCCTCCAGCCCGTTTC Rv2009_nonpal_1 sense_treZ_467_to_stop 10 30 + 1.50633 0.00218 0.279 GGGGGGCCTCCAGCCCGTTTC Rv2009_nonpal_1 antisense_treZ_470_to_stop 8 28 - 1.50633 0.00218 0.279 GGGGGGCCTCCAGCCCGTTTC Rv2009_nonpal_1 antisense_treY_785_to_stop 8 28 - 1.50633 0.00218 0.279 GGGGGGCCTCCAGCCCGTTTC Rv2009_nonpal_1 880_up_of_treZ 8 28 - 1.50633 0.00218 0.279 GGGGGGCCTCCAGCCCGTTTC Rv0967_pal_1 antisense_Rv1251c_1309_from_start 31 37 + -1.79412 0.00219 0.53 GCTGAAC Rv0967_pal_1 antisense_Rv1251c_1309_from_start 31 37 - -1.79412 0.00219 0.53 GTTCAGC Rv0818_pal_1 43_up_of_Rv3179 13 28 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 9761_down_of_Rv3190c 13 28 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 1682_down_of_Rv3180c 13 28 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 5189_up_of_Rv3186 13 28 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 6724_up_of_Rv3188 13 28 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 1681_down_of_Rv3180c 14 29 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 42_up_of_Rv3179 14 29 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 9760_down_of_Rv3190c 14 29 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 5188_up_of_Rv3186 14 29 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 6723_up_of_Rv3188 14 29 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 49_up_of_Rv3179 19 34 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 1688_down_of_Rv3180c 19 34 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 5195_up_of_Rv3186 19 34 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 9767_down_of_Rv3190c 19 34 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 6730_up_of_Rv3188 19 34 + 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 36_up_of_Rv3179 20 35 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 9754_down_of_Rv3190c 20 35 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 1675_down_of_Rv3180c 20 35 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 6717_up_of_Rv3188 20 35 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 5182_up_of_Rv3186 20 35 + 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 1682_down_of_Rv3180c 13 28 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 9761_down_of_Rv3190c 13 28 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 6724_up_of_Rv3188 13 28 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 43_up_of_Rv3179 13 28 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 5189_up_of_Rv3186 13 28 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 9760_down_of_Rv3190c 14 29 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 6723_up_of_Rv3188 14 29 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 1681_down_of_Rv3180c 14 29 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 42_up_of_Rv3179 14 29 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 5188_up_of_Rv3186 14 29 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 9767_down_of_Rv3190c 19 34 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 6730_up_of_Rv3188 19 34 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 5195_up_of_Rv3186 19 34 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 1688_down_of_Rv3180c 19 34 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 49_up_of_Rv3179 19 34 - 2.92708 0.00219 0.105 TATACTGATCGGTGTA Rv0818_pal_1 9754_down_of_Rv3190c 20 35 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 36_up_of_Rv3179 20 35 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 6717_up_of_Rv3188 20 35 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 1675_down_of_Rv3180c 20 35 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv0818_pal_1 5182_up_of_Rv3186 20 35 - 2.92708 0.00219 0.105 TACACCGATCAGTATA Rv1994c_pal_1 sense_Rv2038c_183_from_start 5 19 + 4.95946 0.0022 0.118 GCTGGACTGTGGGCG Rv1994c_pal_1 sense_Rv2038c_183_from_start 5 19 - 4.95946 0.0022 0.118 CGCCCACAGTCCAGC Rv1404_pal_1 antisense_Rv1461_559_from_start 1 13 + 5.425 0.0022 0.186 ACTTATTATCGCC Rv1404_pal_1 antisense_Rv1461_559_from_start 1 13 - 5.425 0.0022 0.186 GGCGATAATAAGT Rv1956_nonpal_1 sense_mmpL4_1184_to_stop 10 30 + 1.62791 0.0022 0.256 ATGATTTCTGGAGACCAATTC Rv1956_nonpal_1 antisense_mmpL4_1187_to_stop 8 28 - 1.62791 0.0022 0.256 ATGATTTCTGGAGACCAATTC Rv3249c_nonpal_1 antisense_metA_391_from_start 9 19 + 5.17188 0.00221 0.47 ACCTGGTCACG Rv3249c_nonpal_1 sense_metA_384_from_start 29 39 - 5.17188 0.00221 0.47 ACCTGGTCACG Rv0081_nonpal_2 antisense_aldA_642_from_start 18 39 + -22.9904 0.00221 0.43 TGGAGGTGACGATGTTGACAAC Rv1956_nonpal_1 sense_rocA_797_to_stop 1 21 + 1.61628 0.00221 0.256 CCTATGGCAGTGGGTGGGTAC Rv3849_nonpal_1 antisense_frdA_787_from_start 25 36 + 2.71233 0.00221 0.549 AGCGGTAGCCGT Rv0767c_nonpal_1 antisense_Rv3282_217_to_stop 8 22 - 5.04286 0.00221 0.445 CTGGAGGCTTACCTG Rv0767c_nonpal_1 447_down_of_accE5 8 22 - 5.04286 0.00221 0.445 CTGGAGGCTTACCTG Rv3681c_nonpal_1 sense_pks9_325_to_stop 13 32 - 1.63291 0.00222 0.241 CCGATAGCCATCTGGAGACG Rv3249c_nonpal_2 antisense_mmpL4_1187_to_stop 24 38 - 4.6 0.00222 0.542 GCGGATTTTGATGAT Rv0678_nonpal_1 antisense_aldA_642_from_start 24 38 + 5.5 0.00222 0.145 TGACGATGTTGACAA Rv0465c_pal_1 93_up_of_lpqG 9 36 + -1.30682 0.00222 0.236 TAGGGCCCGTCGATGCCAGTACCCCGAA Rv0465c_pal_1 93_up_of_lpqG 9 36 - -1.30682 0.00222 0.236 TTCGGGGTACTGGCATCGACGGGCCCTA Rv0273c_pal_1 93_up_of_lpqG 6 21 + 3.5875 0.00223 0.442 TTGTAGGGCCCGTCGA Rv0273c_pal_1 93_up_of_lpqG 6 21 - 3.5875 0.00223 0.442 TCGACGGGCCCTACAA Rv0494_nonpal_2 antisense_Rv1251c_1309_from_start 26 40 + -4.11579 0.00224 1 TTCAAGCTGAACGAG Rv0472c_nonpal_1 sense_pks9_325_to_stop 27 37 + -1.10577 0.00224 0.211 TATCGGTTTGC Rv1353c_pal_1 sense_mptA_23_from_start 18 28 + 6.21212 0.00224 0.334 CCAGCGGTTGA Rv1353c_pal_1 37_up_of_Rv2172c 18 28 + 6.21212 0.00224 0.334 CCAGCGGTTGA Rv1353c_pal_1 37_up_of_Rv2172c 18 28 - 6.21212 0.00224 0.334 TCAACCGCTGG Rv1353c_pal_1 sense_mptA_23_from_start 18 28 - 6.21212 0.00224 0.334 TCAACCGCTGG Rv2989_pal_1 sense_pks6_424_from_start 8 24 + 1.19481 0.00224 0.596 CGATAACAGCGTATCCA Rv2989_pal_1 sense_pks6_423_from_start 8 24 + 1.19481 0.00224 0.596 CGATAACAGCGTATCCA Rv2989_pal_1 sense_pks6_424_from_start 8 24 - 1.19481 0.00224 0.596 TGGATACGCTGTTATCG Rv2989_pal_1 antisense_pks6_431_from_start 24 40 + 1.19481 0.00224 0.596 TGGATACGCTGTTATCG Rv2989_pal_1 sense_pks6_423_from_start 8 24 - 1.19481 0.00224 0.596 TGGATACGCTGTTATCG Rv2989_pal_1 antisense_pks6_430_from_start 24 40 + 1.19481 0.00224 0.596 TGGATACGCTGTTATCG Rv2989_pal_1 antisense_pks6_431_from_start 24 40 - 1.19481 0.00224 0.596 CGATAACAGCGTATCCA Rv2989_pal_1 antisense_pks6_430_from_start 24 40 - 1.19481 0.00224 0.596 CGATAACAGCGTATCCA Rv1473A_pal_2 antisense_Rv0370c_389_from_start 6 13 + -0.726027 0.00224 0.161 ATGAGCAG Rv1473A_pal_2 antisense_Rv0370c_389_from_start 6 13 - -0.726027 0.00224 0.161 CTGCTCAT Rv0302_nonpal_2 antisense_fadE7_121_to_stop 13 23 + 0.935897 0.00225 1 GTACTCCAGCG Rv0302_nonpal_2 sense_fadE7_118_to_stop 15 25 - 0.935897 0.00225 1 GTACTCCAGCG Rv0757_nonpal_1 antisense_fadE7_121_to_stop 14 34 + 2.48101 0.00225 0.595 TACTCCAGCGATATCCCGTTG Rv0757_nonpal_1 sense_fadE7_118_to_stop 4 24 - 2.48101 0.00225 0.595 TACTCCAGCGATATCCCGTTG Rv1423_nonpal_2 antisense_PPE24_1345_to_stop 18 37 - -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1423_nonpal_2 antisense_PPE24_1270_to_stop 18 37 - -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1423_nonpal_2 antisense_PPE24_1570_to_stop 18 37 - -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1423_nonpal_2 sense_PPE24_1577_to_stop 11 30 + -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1423_nonpal_2 sense_PPE24_1352_to_stop 11 30 + -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1423_nonpal_2 sense_PPE24_1277_to_stop 11 30 + -17.9468 0.00225 1 ACCCGCGGGTATCACAATCG Rv1990c_nonpal_1 93_up_of_lpqG 16 26 + 5.63077 0.00225 1 CGTCGATGCCA Rv0023_pal_2 antisense_cobK_311_from_start 6 21 + 4.83117 0.00226 0.292 GCGATGATGGCGGTAC Rv0023_pal_2 antisense_cobK_311_from_start 6 21 - 4.83117 0.00226 0.292 GTACCGCCATCATCGC Rv3557c_pal_1 sense_PE_PGRS57_112_from_start 13 26 + -4.32692 0.00226 0.244 ACCACGCAGGTGCT Rv3557c_pal_1 sense_PE_PGRS54_112_from_start 13 26 + -4.32692 0.00226 0.244 ACCACGCAGGTGCT Rv3557c_pal_1 sense_PE_PGRS57_112_from_start 13 26 - -4.32692 0.00226 0.244 AGCACCTGCGTGGT Rv3557c_pal_1 sense_PE_PGRS54_112_from_start 13 26 - -4.32692 0.00226 0.244 AGCACCTGCGTGGT Rv0653c_pal_1 9767_down_of_Rv3190c 3 26 + 3.49367 0.00226 0.129 CAGTGTCGGTTATAAGTACACCGA Rv0653c_pal_1 5195_up_of_Rv3186 3 26 + 3.49367 0.00226 0.129 CAGTGTCGGTTATAAGTACACCGA Rv0653c_pal_1 1688_down_of_Rv3180c 3 26 + 3.49367 0.00226 0.129 CAGTGTCGGTTATAAGTACACCGA Rv0653c_pal_1 6730_up_of_Rv3188 3 26 + 3.49367 0.00226 0.129 CAGTGTCGGTTATAAGTACACCGA Rv0653c_pal_1 49_up_of_Rv3179 3 26 + 3.49367 0.00226 0.129 CAGTGTCGGTTATAAGTACACCGA Rv0653c_pal_1 9767_down_of_Rv3190c 3 26 - 3.49367 0.00226 0.129 TCGGTGTACTTATAACCGACACTG Rv0653c_pal_1 49_up_of_Rv3179 3 26 - 3.49367 0.00226 0.129 TCGGTGTACTTATAACCGACACTG Rv0653c_pal_1 6730_up_of_Rv3188 3 26 - 3.49367 0.00226 0.129 TCGGTGTACTTATAACCGACACTG Rv0653c_pal_1 5195_up_of_Rv3186 3 26 - 3.49367 0.00226 0.129 TCGGTGTACTTATAACCGACACTG Rv0653c_pal_1 1688_down_of_Rv3180c 3 26 - 3.49367 0.00226 0.129 TCGGTGTACTTATAACCGACACTG Rv2788_pal_1 antisense_aldA_642_from_start 11 32 + 0.0444444 0.00226 0.21 TGACTGCTGGAGGTGACGATGT Rv2788_pal_1 antisense_aldA_642_from_start 11 32 - 0.0444444 0.00226 0.21 ACATCGTCACCTCCAGCAGTCA Rv0967_pal_2 antisense_aldA_642_from_start 30 40 + -0.240506 0.00226 0.887 TGTTGACAACG Rv0967_pal_2 antisense_aldA_642_from_start 30 40 - -0.240506 0.00226 0.887 CGTTGTCAACA Rv0117_nonpal_1 8499_up_of_Rv3186 1 27 - -12.4808 0.00226 0.204 CACCAATCGGTTTACTGTAGGAGGTCT Rv0117_nonpal_1 13071_down_of_Rv3190c 1 27 - -12.4808 0.00226 0.204 CACCAATCGGTTTACTGTAGGAGGTCT Rv0117_nonpal_1 3353_up_of_Rv3179 1 27 - -12.4808 0.00226 0.204 CACCAATCGGTTTACTGTAGGAGGTCT Rv0117_nonpal_1 4992_down_of_Rv3180c 1 27 - -12.4808 0.00226 0.204 CACCAATCGGTTTACTGTAGGAGGTCT Rv0117_nonpal_1 10034_up_of_Rv3188 1 27 - -12.4808 0.00226 0.204 CACCAATCGGTTTACTGTAGGAGGTCT Rv2506_nonpal_1 4999_down_of_Rv3180c 3 21 - -1.58511 0.00226 0.425 GTACTTTGTGCTTTGACGG Rv2506_nonpal_1 10041_up_of_Rv3188 3 21 - -1.58511 0.00226 0.425 GTACTTTGTGCTTTGACGG Rv2506_nonpal_1 8506_up_of_Rv3186 3 21 - -1.58511 0.00226 0.425 GTACTTTGTGCTTTGACGG Rv2506_nonpal_1 13078_down_of_Rv3190c 3 21 - -1.58511 0.00226 0.425 GTACTTTGTGCTTTGACGG Rv2506_nonpal_1 3360_up_of_Rv3179 3 21 - -1.58511 0.00226 0.425 GTACTTTGTGCTTTGACGG Rv1353c_pal_2 93_up_of_lpqG 3 29 + -33.7265 0.00226 0.385 GCATTGTAGGGCCCGTCGATGCCAGTA Rv1353c_pal_2 93_up_of_lpqG 3 29 - -33.7265 0.00226 0.385 TACTGGCATCGACGGGCCCTACAATGC Rv0691c_pal_2 antisense_PPE24_1345_to_stop 10 18 + 0.0126582 0.00227 0.423 AAAGCCACC Rv0691c_pal_2 antisense_PPE24_1570_to_stop 10 18 + 0.0126582 0.00227 0.423 AAAGCCACC Rv0691c_pal_2 antisense_PPE24_1270_to_stop 10 18 + 0.0126582 0.00227 0.423 AAAGCCACC Rv0691c_pal_2 antisense_PPE24_1270_to_stop 10 18 - 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 antisense_PPE24_1570_to_stop 10 18 - 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 antisense_PPE24_1345_to_stop 10 18 - 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 sense_PPE24_1277_to_stop 30 38 + 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 sense_PPE24_1352_to_stop 30 38 + 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 sense_PPE24_1577_to_stop 30 38 + 0.0126582 0.00227 0.423 GGTGGCTTT Rv0691c_pal_2 sense_PPE24_1577_to_stop 30 38 - 0.0126582 0.00227 0.423 AAAGCCACC Rv0691c_pal_2 sense_PPE24_1277_to_stop 30 38 - 0.0126582 0.00227 0.423 AAAGCCACC Rv0691c_pal_2 sense_PPE24_1352_to_stop 30 38 - 0.0126582 0.00227 0.423 AAAGCCACC Rv0302_nonpal_1 antisense_Rv0370c_389_from_start 15 29 + 4.72464 0.00227 0.317 ACTGGAGGGGTCGGT Rv0081_pal_1 antisense_frdA_787_from_start 9 24 + 3.25333 0.00227 0.443 TCGTAATCCTGGAGGT Rv0081_pal_1 antisense_frdA_787_from_start 9 24 - 3.25333 0.00227 0.443 ACCTCCAGGATTACGA Rv0047c_pal_1 sense_fadE7_118_to_stop 6 17 + 5.57576 0.00227 0.345 ACGGGATATCGC Rv0047c_pal_1 sense_fadE7_118_to_stop 6 17 - 5.57576 0.00227 0.345 GCGATATCCCGT Rv0047c_pal_1 antisense_fadE7_121_to_stop 21 32 + 5.57576 0.00227 0.345 GCGATATCCCGT Rv0047c_pal_1 antisense_fadE7_121_to_stop 21 32 - 5.57576 0.00227 0.345 ACGGGATATCGC Rv3246c_nonpal_1 sense_metA_384_from_start 11 30 + 2.66667 0.00227 0.173 TTTCCGCTGATCTCGATACG Rv3246c_nonpal_1 antisense_metA_391_from_start 18 37 - 2.66667 0.00227 0.173 TTTCCGCTGATCTCGATACG Rv2788_pal_1 93_up_of_lpqG 18 39 + 0.0111111 0.00228 0.21 TCGATGCCAGTACCCCGAAATT Rv2788_pal_1 93_up_of_lpqG 18 39 - 0.0111111 0.00228 0.21 AATTTCGGGGTACTGGCATCGA Rv3830c_nonpal_2 sense_Rv2279_300_to_stop 3 29 - -19.4327 0.00228 0.528 TACTGAGATCCCCTATCCGTATGGTGG Rv0691c_pal_2 sense_rocA_797_to_stop 3 11 + -0.0126582 0.00228 0.423 TATGGCAGT Rv0691c_pal_2 sense_rocA_797_to_stop 3 11 - -0.0126582 0.00228 0.423 ACTGCCATA Rv0135c_nonpal_1 1662_up_of_Rv2018 26 36 - 2.89062 0.00228 0.34 CTTGTATCAAT Rv0472c_nonpal_1 antisense_Rv1461_559_from_start 22 32 + -1.14423 0.00228 0.211 TTACTGTACCG Rv0472c_nonpal_1 sense_Rv1461_552_from_start 16 26 - -1.14423 0.00228 0.211 TTACTGTACCG Rv1990c_pal_1 antisense_pyrC_541_to_stop 8 22 + 5.80882 0.00229 1 GACCTCGGCGGTGAT Rv1990c_pal_1 antisense_pyrC_541_to_stop 8 22 - 5.80882 0.00229 1 ATCACCGCCGAGGTC Rv1990c_pal_1 sense_pyrC_548_to_stop 26 40 + 5.80882 0.00229 1 ATCACCGCCGAGGTC Rv1990c_pal_1 sense_pyrC_548_to_stop 26 40 - 5.80882 0.00229 1 GACCTCGGCGGTGAT Rv3765c_nonpal_1 93_up_of_lpqG 20 39 - -5.71579 0.00229 0.484 AATTTCGGGGTACTGGCATC Rv3246c_nonpal_1 4992_down_of_Rv3180c 17 36 + 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 10034_up_of_Rv3188 17 36 + 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 13071_down_of_Rv3190c 17 36 + 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 3353_up_of_Rv3179 17 36 + 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 8499_up_of_Rv3186 17 36 + 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 10041_up_of_Rv3188 12 31 - 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 3360_up_of_Rv3179 12 31 - 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 8506_up_of_Rv3186 12 31 - 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 13078_down_of_Rv3190c 12 31 - 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv3246c_nonpal_1 4999_down_of_Rv3180c 12 31 - 2.64198 0.00229 0.173 ACCGATTGGTGTACTTTGTG Rv0302_nonpal_2 antisense_aldA_642_from_start 27 37 - 0.794872 0.0023 1 TGTCAACATCG Rv0602c_pal_1 6724_up_of_Rv3188 5 12 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 1682_down_of_Rv3180c 5 12 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 5189_up_of_Rv3186 5 12 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 9761_down_of_Rv3190c 5 12 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 43_up_of_Rv3179 5 12 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 5195_up_of_Rv3186 11 18 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 6730_up_of_Rv3188 11 18 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 1688_down_of_Rv3180c 11 18 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 9767_down_of_Rv3190c 11 18 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 49_up_of_Rv3179 11 18 + 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 43_up_of_Rv3179 5 12 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 9761_down_of_Rv3190c 5 12 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 6724_up_of_Rv3188 5 12 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 5189_up_of_Rv3186 5 12 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 1682_down_of_Rv3180c 5 12 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 5195_up_of_Rv3186 11 18 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 9767_down_of_Rv3190c 11 18 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 6730_up_of_Rv3188 11 18 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 49_up_of_Rv3179 11 18 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 1688_down_of_Rv3180c 11 18 - 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 5188_up_of_Rv3186 30 37 + 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 6723_up_of_Rv3188 30 37 + 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 9760_down_of_Rv3190c 30 37 + 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 1681_down_of_Rv3180c 30 37 + 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 42_up_of_Rv3179 30 37 + 1.48101 0.0023 0.135 CTTATAAC Rv0602c_pal_1 6723_up_of_Rv3188 30 37 - 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 9760_down_of_Rv3190c 30 37 - 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 1681_down_of_Rv3180c 30 37 - 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 5188_up_of_Rv3186 30 37 - 1.48101 0.0023 0.135 GTTATAAG Rv0602c_pal_1 42_up_of_Rv3179 30 37 - 1.48101 0.0023 0.135 GTTATAAG Rv0981_nonpal_2 sense_Rv1278_1158_to_stop 12 32 + -1.08421 0.0023 0.467 GCGGCTGGAGAGGTCGCTGAC Rv0324_pal_1 antisense_cobK_311_from_start 4 15 + 2.69136 0.0023 0.555 CCGCGATGATGG Rv0324_pal_1 antisense_cobK_311_from_start 4 15 - 2.69136 0.0023 0.555 CCATCATCGCGG Rv0678_pal_2 13078_down_of_Rv3190c 10 25 + 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 10041_up_of_Rv3188 10 25 + 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 3360_up_of_Rv3179 10 25 + 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 4999_down_of_Rv3180c 10 25 + 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 8506_up_of_Rv3186 10 25 + 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 13071_down_of_Rv3190c 23 38 + 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 10034_up_of_Rv3188 23 38 + 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 3353_up_of_Rv3179 23 38 + 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 4992_down_of_Rv3180c 23 38 + 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 8499_up_of_Rv3186 23 38 + 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 4999_down_of_Rv3180c 10 25 - 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 3360_up_of_Rv3179 10 25 - 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 8506_up_of_Rv3186 10 25 - 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 13078_down_of_Rv3190c 10 25 - 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 10041_up_of_Rv3188 10 25 - 3.24 0.0023 0.255 TGGTGTACTTTGTGCT Rv0678_pal_2 13071_down_of_Rv3190c 23 38 - 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 8499_up_of_Rv3186 23 38 - 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 4992_down_of_Rv3180c 23 38 - 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 3353_up_of_Rv3179 23 38 - 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv0678_pal_2 10034_up_of_Rv3188 23 38 - 3.24 0.0023 0.255 AGCACAAAGTACACCA Rv3249c_pal_2 8499_up_of_Rv3186 16 30 + 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 3353_up_of_Rv3179 16 30 + 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 10034_up_of_Rv3188 16 30 + 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 13071_down_of_Rv3190c 16 30 + 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 4992_down_of_Rv3180c 16 30 + 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 8506_up_of_Rv3186 18 32 + 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 3360_up_of_Rv3179 18 32 + 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 13078_down_of_Rv3190c 18 32 + 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 4999_down_of_Rv3180c 18 32 + 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 10041_up_of_Rv3188 18 32 + 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 8499_up_of_Rv3186 16 30 - 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 3353_up_of_Rv3179 16 30 - 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 13071_down_of_Rv3190c 16 30 - 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 4992_down_of_Rv3180c 16 30 - 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 10034_up_of_Rv3188 16 30 - 2.77027 0.00231 0.15 GTACACCAATCGGTT Rv3249c_pal_2 8506_up_of_Rv3186 18 32 - 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 10041_up_of_Rv3188 18 32 - 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 13078_down_of_Rv3190c 18 32 - 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 3360_up_of_Rv3179 18 32 - 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3249c_pal_2 4999_down_of_Rv3180c 18 32 - 2.77027 0.00231 0.15 AACCGATTGGTGTAC Rv3830c_nonpal_1 sense_Rv0674_10_to_stop 23 37 - 3.14865 0.00231 0.624 AGATCACTCATGTCA Rv2359_nonpal_1 1662_up_of_Rv2018 7 34 - -18.6538 0.00231 0.15 TGTATCAATTTCACTGGAGAAGGCCGAT Rv0465c_nonpal_1 antisense_Rv1461_559_from_start 13 36 + -13.1954 0.00232 0.411 CGGCAGGGATTACTGTACCGAAAT Rv0465c_nonpal_1 sense_Rv1461_552_from_start 12 35 - -13.1954 0.00232 0.411 CGGCAGGGATTACTGTACCGAAAT Rv0023_nonpal_1 1662_up_of_Rv2018 17 37 - 4.85915 0.00232 0.131 TCTTGTATCAATTTCACTGGA Rv0047c_nonpal_1 antisense_gca_467_from_start 18 32 + 5 0.00232 0.428 GTGATATTGATACGC Rv0047c_nonpal_1 sense_gca_460_from_start 16 30 - 5 0.00232 0.428 GTGATATTGATACGC Rv1353c_nonpal_1 antisense_cobK_311_from_start 11 25 + 5.62121 0.00232 0.204 GATGGCGGTACCGGG Rv1353c_nonpal_1 sense_cobK_304_from_start 23 37 - 5.62121 0.00232 0.204 GATGGCGGTACCGGG Rv1994c_nonpal_1 sense_Rv2038c_183_from_start 5 19 + 4.93151 0.00233 0.148 GCTGGACTGTGGGCG Rv0302_nonpal_1 antisense_fadE7_121_to_stop 8 22 - 4.66667 0.00233 0.317 GCTGGAGTACCCGGT Rv0302_nonpal_1 sense_fadE7_118_to_stop 16 30 + 4.66667 0.00233 0.317 GCTGGAGTACCCGGT Rv1816_pal_2 sense_mmpL4_1184_to_stop 8 16 + -1.64384 0.00233 0.267 TGATGATTT Rv1816_pal_2 sense_mmpL4_1184_to_stop 8 16 - -1.64384 0.00233 0.267 AAATCATCA Rv1816_pal_2 antisense_mmpL4_1187_to_stop 22 30 + -1.64384 0.00233 0.267 AAATCATCA Rv1816_pal_2 antisense_mmpL4_1187_to_stop 22 30 - -1.64384 0.00233 0.267 TGATGATTT Rv1719_nonpal_2 sense_bioB_253_to_stop 15 35 + 0.729412 0.00233 1 CCTGGAGGTAATGCCGGTCGG Rv3066_nonpal_1 sense_metA_384_from_start 20 39 - 1.81609 0.00234 0.916 ACCTGGTCACGTATCGAGAT Rv3066_nonpal_1 antisense_metA_391_from_start 9 28 + 1.81609 0.00234 0.916 ACCTGGTCACGTATCGAGAT Rv1956_pal_1 1662_up_of_Rv2018 33 40 + 2.44186 0.00234 0.234 CAAGATCG Rv1956_pal_1 1662_up_of_Rv2018 33 40 - 2.44186 0.00234 0.234 CGATCTTG Rv3557c_pal_1 antisense_PPE24_1570_to_stop 12 25 + -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3557c_pal_1 antisense_PPE24_1270_to_stop 12 25 + -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3557c_pal_1 antisense_PPE24_1345_to_stop 12 25 + -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3557c_pal_1 sense_PPE24_1352_to_stop 23 36 + -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 sense_PPE24_1577_to_stop 23 36 + -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 sense_PPE24_1277_to_stop 23 36 + -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 antisense_PPE24_1570_to_stop 12 25 - -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 antisense_PPE24_1345_to_stop 12 25 - -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 antisense_PPE24_1270_to_stop 12 25 - -4.48077 0.00234 0.244 CACAATCGGTGGCT Rv3557c_pal_1 sense_PPE24_1277_to_stop 23 36 - -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3557c_pal_1 sense_PPE24_1577_to_stop 23 36 - -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3557c_pal_1 sense_PPE24_1352_to_stop 23 36 - -4.48077 0.00234 0.244 AGCCACCGATTGTG Rv3574_pal_1 880_up_of_treZ 6 21 + 4.27536 0.00234 0.245 CTGAAACGGGCTGGAG Rv3574_pal_1 antisense_treY_785_to_stop 6 21 + 4.27536 0.00234 0.245 CTGAAACGGGCTGGAG Rv3574_pal_1 antisense_treZ_470_to_stop 6 21 + 4.27536 0.00234 0.245 CTGAAACGGGCTGGAG Rv3574_pal_1 sense_treZ_467_to_stop 17 32 + 4.27536 0.00234 0.245 CTCCAGCCCGTTTCAG Rv3574_pal_1 877_up_of_treZ 17 32 + 4.27536 0.00234 0.245 CTCCAGCCCGTTTCAG Rv3574_pal_1 880_up_of_treZ 6 21 - 4.27536 0.00234 0.245 CTCCAGCCCGTTTCAG Rv3574_pal_1 antisense_treY_785_to_stop 6 21 - 4.27536 0.00234 0.245 CTCCAGCCCGTTTCAG Rv3574_pal_1 antisense_treZ_470_to_stop 6 21 - 4.27536 0.00234 0.245 CTCCAGCCCGTTTCAG Rv3574_pal_1 877_up_of_treZ 17 32 - 4.27536 0.00234 0.245 CTGAAACGGGCTGGAG Rv3574_pal_1 sense_treZ_467_to_stop 17 32 - 4.27536 0.00234 0.245 CTGAAACGGGCTGGAG Rv0275c_nonpal_1 7_up_of_Rv1049 13 38 + -10.6154 0.00235 0.142 ATTACTCCAGACTCGTGTAGCTACAC Rv3488_pal_2 6730_up_of_Rv3188 3 10 + 0.930233 0.00235 0.408 CAGTGTCG Rv3488_pal_2 1688_down_of_Rv3180c 3 10 + 0.930233 0.00235 0.408 CAGTGTCG Rv3488_pal_2 9767_down_of_Rv3190c 3 10 + 0.930233 0.00235 0.408 CAGTGTCG Rv3488_pal_2 49_up_of_Rv3179 3 10 + 0.930233 0.00235 0.408 CAGTGTCG Rv3488_pal_2 5195_up_of_Rv3186 3 10 + 0.930233 0.00235 0.408 CAGTGTCG Rv3488_pal_2 antisense_cobK_311_from_start 7 14 + 0.930233 0.00235 0.408 CGATGATG Rv3488_pal_2 1688_down_of_Rv3180c 3 10 - 0.930233 0.00235 0.408 CGACACTG Rv3488_pal_2 5195_up_of_Rv3186 3 10 - 0.930233 0.00235 0.408 CGACACTG Rv3488_pal_2 6730_up_of_Rv3188 3 10 - 0.930233 0.00235 0.408 CGACACTG Rv3488_pal_2 49_up_of_Rv3179 3 10 - 0.930233 0.00235 0.408 CGACACTG Rv3488_pal_2 9767_down_of_Rv3190c 3 10 - 0.930233 0.00235 0.408 CGACACTG Rv3488_pal_2 antisense_cobK_311_from_start 7 14 - 0.930233 0.00235 0.408 CATCATCG Rv1404_nonpal_1 antisense_Rv2963_530_to_stop 3 28 + 2.2 0.00236 0.0612 AGAAGCTCTGCCAGAACGATTCGGGT Rv1353c_nonpal_1 antisense_Rv2279_293_to_stop 4 18 - 5.59091 0.00236 0.204 CACATCGATCCGGTT Rv0158_nonpal_1 antisense_fadE7_121_to_stop 2 26 - -9.22642 0.00236 0.39 TATCGCTGGAGTACCCGGTCATCCG Rv0158_nonpal_1 sense_fadE7_118_to_stop 12 36 + -9.22642 0.00236 0.39 TATCGCTGGAGTACCCGGTCATCCG Rv0678_pal_1 antisense_mmpL4_1187_to_stop 34 40 + -1.91176 0.00237 0.428 TCCGCGA Rv0678_pal_1 antisense_mmpL4_1187_to_stop 34 40 - -1.91176 0.00237 0.428 TCGCGGA Rv1219c_nonpal_2 1682_down_of_Rv3180c 10 37 + -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 9761_down_of_Rv3190c 10 37 + -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 43_up_of_Rv3179 10 37 + -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 6724_up_of_Rv3188 10 37 + -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 5189_up_of_Rv3186 10 37 + -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 1681_down_of_Rv3180c 5 32 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 9760_down_of_Rv3190c 5 32 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 6723_up_of_Rv3188 5 32 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 42_up_of_Rv3179 5 32 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 5188_up_of_Rv3186 5 32 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 9754_down_of_Rv3190c 11 38 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 5182_up_of_Rv3186 11 38 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 6717_up_of_Rv3188 11 38 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 36_up_of_Rv3179 11 38 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv1219c_nonpal_2 1675_down_of_Rv3180c 11 38 - -38.9829 0.00237 0.302 AAGTACACCGATCAGTATACAAGGAGTC Rv0691c_pal_2 1662_up_of_Rv2018 20 28 + -0.0632911 0.00237 0.423 AGTGAAATT Rv0691c_pal_2 1662_up_of_Rv2018 20 28 - -0.0632911 0.00237 0.423 AATTTCACT Rv1994c_nonpal_1 sense_Rv2963_537_to_stop 21 35 + 4.87671 0.00239 0.148 CCCGAATCGTTCTGG Rv1994c_nonpal_1 antisense_Rv2963_530_to_stop 13 27 - 4.87671 0.00239 0.148 CCCGAATCGTTCTGG Rv1353c_nonpal_2 antisense_Rv1461_416_from_start 14 34 - -36.188 0.00239 0.272 AGAGATTAGTAGCTGGAGTAG Rv1353c_nonpal_2 sense_Rv2279_300_to_stop 18 38 - -36.188 0.00239 0.272 ATCGATGTGTACTGAGATCCC Rv1353c_nonpal_2 antisense_Rv2279_293_to_stop 10 30 + -36.188 0.00239 0.272 ATCGATGTGTACTGAGATCCC Rv1404_nonpal_1 sense_metA_384_from_start 5 30 + 2.1625 0.00239 0.0612 TCAAGATTTCCGCTGATCTCGATACG Rv0691c_nonpal_1 antisense_rocA_790_to_stop 19 32 + 2.92188 0.00239 0.322 CGATATTGGTACCC Rv0691c_nonpal_1 sense_rocA_797_to_stop 16 29 - 2.92188 0.00239 0.322 CGATATTGGTACCC Rv1404_pal_1 sense_gca_460_from_start 17 29 + 5.25 0.00239 0.186 CGTATCAATATCA Rv1404_pal_1 antisense_gca_467_from_start 19 31 + 5.25 0.00239 0.186 TGATATTGATACG Rv1404_pal_1 sense_gca_460_from_start 17 29 - 5.25 0.00239 0.186 TGATATTGATACG Rv1404_pal_1 antisense_gca_467_from_start 19 31 - 5.25 0.00239 0.186 CGTATCAATATCA Rv0653c_nonpal_1 sense_PPE24_1352_to_stop 3 21 + 1.68354 0.00239 0.144 CTGACGATACCCGCGGGTA Rv0653c_nonpal_1 sense_PPE24_1577_to_stop 3 21 + 1.68354 0.00239 0.144 CTGACGATACCCGCGGGTA Rv0653c_nonpal_1 sense_PPE24_1277_to_stop 3 21 + 1.68354 0.00239 0.144 CTGACGATACCCGCGGGTA Rv3246c_nonpal_1 antisense_Rv1461_559_from_start 18 37 + 2.51852 0.00239 0.173 GGGATTACTGTACCGAAATA Rv3246c_nonpal_1 sense_Rv1461_552_from_start 11 30 - 2.51852 0.00239 0.173 GGGATTACTGTACCGAAATA Rv0302_nonpal_1 93_up_of_lpqG 8 22 + 4.6087 0.00239 0.317 GTAGGGCCCGTCGAT Rv0653c_nonpal_1 sense_Rv1461_552_from_start 1 19 - 1.67089 0.0024 0.144 ACCGAAATATTCCTTGAAA Rv0023_nonpal_2 antisense_rocA_790_to_stop 13 40 + -34.0962 0.0024 0.282 AGCGGCCGATATTGGTACCCACCCACTG Rv0023_nonpal_2 sense_rocA_797_to_stop 8 35 - -34.0962 0.0024 0.282 AGCGGCCGATATTGGTACCCACCCACTG Rv0691c_pal_2 10_up_of_Rv1866 32 40 + -0.139241 0.0024 0.423 GGTGACACG Rv0691c_pal_2 10_up_of_Rv1866 32 40 - -0.139241 0.0024 0.423 CGTGTCACC Rv0602c_nonpal_1 sense_mmpL4_1184_to_stop 3 14 - 3.0274 0.0024 0.481 ATCATCAAAATC Rv0602c_nonpal_1 antisense_mmpL4_1187_to_stop 24 35 + 3.0274 0.0024 0.481 ATCATCAAAATC Rv1719_nonpal_2 sense_Rv1278_1158_to_stop 15 35 + 0.611765 0.00241 1 GCTGGAGAGGTCGCTGACCTA Rv0135c_nonpal_1 sense_PPE24_1277_to_stop 5 15 - 2.64062 0.00241 0.34 CGGGTATCGTC Rv0135c_nonpal_1 sense_PPE24_1577_to_stop 5 15 - 2.64062 0.00241 0.34 CGGGTATCGTC Rv0135c_nonpal_1 sense_PPE24_1352_to_stop 5 15 - 2.64062 0.00241 0.34 CGGGTATCGTC Rv1816_pal_1 antisense_pyrC_541_to_stop 12 24 + 5.61379 0.00241 0.144 TCGGCGGTGATCG Rv1816_pal_1 antisense_pyrC_541_to_stop 12 24 - 5.61379 0.00241 0.144 CGATCACCGCCGA Rv1816_pal_1 sense_pyrC_548_to_stop 24 36 + 5.61379 0.00241 0.144 CGATCACCGCCGA Rv1816_pal_1 sense_pyrC_548_to_stop 24 36 - 5.61379 0.00241 0.144 TCGGCGGTGATCG Rv2788_nonpal_1 antisense_pyrC_541_to_stop 11 38 + -28.0581 0.00242 0.808 CTCGGCGGTGATCGAAATACCCTGGTCC Rv2788_nonpal_1 sense_pyrC_548_to_stop 10 37 - -28.0581 0.00242 0.808 CTCGGCGGTGATCGAAATACCCTGGTCC Rv1167c_nonpal_1 antisense_PPE34_1661_from_start 20 34 - -2.72115 0.00242 0.759 TTCCCCGGATTCCCT Rv1167c_nonpal_1 sense_PPE34_1664_from_start 4 18 + -2.72115 0.00242 0.759 TTCCCCGGATTCCCT Rv1167c_nonpal_1 sense_PPE34_1439_from_start 4 18 + -2.72115 0.00242 0.759 TTCCCCGGATTCCCT Rv1167c_nonpal_1 sense_PPE34_3066_to_stop 4 18 + -2.72115 0.00242 0.759 TTCCCCGGATTCCCT Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 9 27 + 1.64557 0.00242 0.144 CCGGGTACTCCAGCGATAT Rv0653c_nonpal_1 sense_fadE7_118_to_stop 11 29 - 1.64557 0.00242 0.144 CCGGGTACTCCAGCGATAT Rv1994c_pal_1 sense_mmpL4_1184_to_stop 6 20 + 4.74324 0.00242 0.118 TTTGATGATTTCTGG Rv1994c_pal_1 antisense_mmpL4_1187_to_stop 18 32 + 4.74324 0.00242 0.118 CCAGAAATCATCAAA Rv1994c_pal_1 sense_mmpL4_1184_to_stop 6 20 - 4.74324 0.00242 0.118 CCAGAAATCATCAAA Rv1994c_pal_1 antisense_mmpL4_1187_to_stop 18 32 - 4.74324 0.00242 0.118 TTTGATGATTTCTGG Rv3681c_nonpal_1 1662_up_of_Rv2018 13 32 - 1.35443 0.00242 0.255 TATCAATTTCACTGGAGAAG Rv0135c_pal_1 antisense_fadE7_121_to_stop 10 19 + 5.875 0.00242 0.278 CGGGTACTCC Rv0135c_pal_1 sense_fadE7_118_to_stop 19 28 + 5.875 0.00242 0.278 GGAGTACCCG Rv0135c_pal_1 antisense_fadE7_121_to_stop 10 19 - 5.875 0.00242 0.278 GGAGTACCCG Rv0135c_pal_1 sense_fadE7_118_to_stop 19 28 - 5.875 0.00242 0.278 CGGGTACTCC Rv0339c_nonpal_2 antisense_cobK_311_from_start 5 25 + -9.15385 0.00242 0.7 CGCGATGATGGCGGTACCGGG Rv0691c_pal_2 sense_Rv0674_10_to_stop 21 29 + -0.177215 0.00243 0.423 GGTGACATG Rv0691c_pal_2 sense_Rv0674_10_to_stop 21 29 - -0.177215 0.00243 0.423 CATGTCACC Rv1816_pal_2 antisense_aldA_642_from_start 30 38 + -1.75342 0.00243 0.267 TGTTGACAA Rv1816_pal_2 antisense_aldA_642_from_start 30 38 - -1.75342 0.00243 0.267 TTGTCAACA Rv2034_pal_2 93_up_of_lpqG 15 21 + 0.151899 0.00243 0.705 CCGTCGA Rv2034_pal_2 93_up_of_lpqG 15 21 - 0.151899 0.00243 0.705 TCGACGG Rv2250c_nonpal_1 antisense_PPE34_1661_from_start 7 16 + 4.98551 0.00243 0.274 TCACGTAATC Rv2250c_nonpal_1 sense_PPE34_1664_from_start 22 31 - 4.98551 0.00243 0.274 TCACGTAATC Rv2250c_nonpal_1 sense_PPE34_3066_to_stop 22 31 - 4.98551 0.00243 0.274 TCACGTAATC Rv2250c_nonpal_1 sense_PPE34_1439_from_start 22 31 - 4.98551 0.00243 0.274 TCACGTAATC Rv2011c_nonpal_1 93_up_of_lpqG 1 19 - 5.34286 0.00243 0.656 GACGGGCCCTACAATGCGC Rv0023_nonpal_1 3360_up_of_Rv3179 7 27 - 4.76056 0.00243 0.131 ATTGGTGTACTTTGTGCTTTG Rv0023_nonpal_1 10041_up_of_Rv3188 7 27 - 4.76056 0.00243 0.131 ATTGGTGTACTTTGTGCTTTG Rv0023_nonpal_1 4999_down_of_Rv3180c 7 27 - 4.76056 0.00243 0.131 ATTGGTGTACTTTGTGCTTTG Rv0023_nonpal_1 8506_up_of_Rv3186 7 27 - 4.76056 0.00243 0.131 ATTGGTGTACTTTGTGCTTTG Rv0023_nonpal_1 13078_down_of_Rv3190c 7 27 - 4.76056 0.00243 0.131 ATTGGTGTACTTTGTGCTTTG Rv1049_nonpal_2 sense_PE_PGRS54_112_from_start 13 27 - 3.4 0.00244 0.247 CAGCACCTGCGTGGT Rv1049_nonpal_2 sense_PE_PGRS57_112_from_start 13 27 - 3.4 0.00244 0.247 CAGCACCTGCGTGGT Rv2887_nonpal_1 sense_PPE34_1439_from_start 19 33 + 1.125 0.00244 0.519 CCAGATTACGTGACA Rv2887_nonpal_1 sense_PPE34_1664_from_start 19 33 + 1.125 0.00244 0.519 CCAGATTACGTGACA Rv2887_nonpal_1 antisense_PPE34_1661_from_start 5 19 - 1.125 0.00244 0.519 CCAGATTACGTGACA Rv2887_nonpal_1 sense_PPE34_3066_to_stop 19 33 + 1.125 0.00244 0.519 CCAGATTACGTGACA Rv0880_nonpal_1 antisense_gca_467_from_start 5 28 - -5.54737 0.00245 0.189 ATCAATATCACAAGTCTTACGGCA Rv0981_nonpal_1 antisense_accA1_595_from_start 4 31 - -14.3113 0.00245 0.395 TACGCTATTCCTGGAGCGGTTTGTGTTG Rv0981_nonpal_1 sense_accA1_598_from_start 7 34 + -14.3113 0.00245 0.395 TACGCTATTCCTGGAGCGGTTTGTGTTG Rv0678_nonpal_1 antisense_pyrC_541_to_stop 14 28 + 5.3125 0.00245 0.156 GGCGGTGATCGAAAT Rv0678_nonpal_1 sense_pyrC_548_to_stop 20 34 - 5.3125 0.00245 0.156 GGCGGTGATCGAAAT Rv0767c_nonpal_1 sense_pks9_325_to_stop 22 36 + 4.81429 0.00246 0.445 ATGGCTATCGGTTTG Rv0135c_nonpal_1 sense_accA1_598_from_start 2 12 - 2.53125 0.00246 0.34 AGCGTATCGTC Rv0135c_nonpal_1 antisense_accA1_595_from_start 26 36 + 2.53125 0.00246 0.34 AGCGTATCGTC Rv0494_nonpal_2 sense_Rv1461_475_from_start 19 33 - -4.51579 0.00246 1 GACTCCTTGAGCCTC Rv0494_nonpal_2 antisense_Rv1461_472_from_start 5 19 + -4.51579 0.00246 1 GACTCCTTGAGCCTC Rv2359_pal_1 antisense_PPE24_1570_to_stop 9 29 + -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv2359_pal_1 antisense_PPE24_1345_to_stop 9 29 + -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv2359_pal_1 antisense_PPE24_1270_to_stop 9 29 + -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv2359_pal_1 sense_PPE24_1577_to_stop 19 39 + -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 sense_PPE24_1277_to_stop 19 39 + -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 sense_PPE24_1352_to_stop 19 39 + -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 antisense_PPE24_1570_to_stop 9 29 - -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 antisense_PPE24_1345_to_stop 9 29 - -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 antisense_PPE24_1270_to_stop 9 29 - -11.5619 0.00247 0.143 GTATCACAATCGGTGGCTTTA Rv2359_pal_1 sense_PPE24_1277_to_stop 19 39 - -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv2359_pal_1 sense_PPE24_1577_to_stop 19 39 - -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv2359_pal_1 sense_PPE24_1352_to_stop 19 39 - -11.5619 0.00247 0.143 TAAAGCCACCGATTGTGATAC Rv1404_pal_1 8499_up_of_Rv3186 6 18 + 5.1875 0.00247 0.186 TCCTACAGTAAAC Rv1404_pal_1 4992_down_of_Rv3180c 6 18 + 5.1875 0.00247 0.186 TCCTACAGTAAAC Rv1404_pal_1 3353_up_of_Rv3179 6 18 + 5.1875 0.00247 0.186 TCCTACAGTAAAC Rv1404_pal_1 10034_up_of_Rv3188 6 18 + 5.1875 0.00247 0.186 TCCTACAGTAAAC Rv1404_pal_1 13071_down_of_Rv3190c 6 18 + 5.1875 0.00247 0.186 TCCTACAGTAAAC Rv1404_pal_1 13071_down_of_Rv3190c 6 18 - 5.1875 0.00247 0.186 GTTTACTGTAGGA Rv1404_pal_1 8499_up_of_Rv3186 6 18 - 5.1875 0.00247 0.186 GTTTACTGTAGGA Rv1404_pal_1 3353_up_of_Rv3179 6 18 - 5.1875 0.00247 0.186 GTTTACTGTAGGA Rv1404_pal_1 10034_up_of_Rv3188 6 18 - 5.1875 0.00247 0.186 GTTTACTGTAGGA Rv1404_pal_1 4992_down_of_Rv3180c 6 18 - 5.1875 0.00247 0.186 GTTTACTGTAGGA Rv1219c_pal_1 sense_mmpL4_1184_to_stop 8 16 + 4.60759 0.00247 0.222 TGATGATTT Rv1219c_pal_1 sense_mmpL4_1184_to_stop 8 16 - 4.60759 0.00247 0.222 AAATCATCA Rv1219c_pal_1 antisense_mmpL4_1187_to_stop 22 30 + 4.60759 0.00247 0.222 AAATCATCA Rv1219c_pal_1 antisense_mmpL4_1187_to_stop 22 30 - 4.60759 0.00247 0.222 TGATGATTT Rv1033c_nonpal_1 sense_accA1_598_from_start 17 31 - -0.341772 0.00247 0.506 CACAAACCGCTCCAG Rv1033c_nonpal_1 antisense_accA1_595_from_start 7 21 + -0.341772 0.00247 0.506 CACAAACCGCTCCAG Rv0653c_nonpal_1 sense_gca_460_from_start 20 38 + 1.56962 0.00248 0.144 ATCAATATCACAAGTCTTA Rv0653c_nonpal_1 antisense_gca_467_from_start 10 28 - 1.56962 0.00248 0.144 ATCAATATCACAAGTCTTA Rv1816_nonpal_2 antisense_cobK_311_from_start 5 32 - -39.0192 0.00248 0.697 GTGGGATCCCGGTACCGCCATCATCGCG Rv2021c_pal_1 antisense_Rv1461_559_from_start 2 16 + 5.64368 0.00249 0.784 CTTATTATCGCCGGC Rv2021c_pal_1 antisense_Rv1461_559_from_start 2 16 - 5.64368 0.00249 0.784 GCCGGCGATAATAAG Rv3557c_nonpal_1 sense_PE_PGRS57_112_from_start 12 31 + -12.9615 0.00249 0.341 GACCACGCAGGTGCTGGCTG Rv3557c_nonpal_1 sense_PE_PGRS54_112_from_start 12 31 + -12.9615 0.00249 0.341 GACCACGCAGGTGCTGGCTG Rv2887_pal_1 sense_metA_384_from_start 7 21 + 2.9375 0.00249 0.382 AAGATTTCCGCTGAT Rv2887_pal_1 sense_metA_384_from_start 7 21 - 2.9375 0.00249 0.382 ATCAGCGGAAATCTT Rv2788_nonpal_1 sense_Rv2038c_183_from_start 9 36 - -28.2442 0.00249 0.808 GCTCGCCGATCCGGATACGCCCACAGTC Rv2034_nonpal_1 sense_pyrC_548_to_stop 23 33 + 5.79412 0.0025 0.359 TCGATCACCGC Rv2034_nonpal_1 antisense_pyrC_541_to_stop 15 25 - 5.79412 0.0025 0.359 TCGATCACCGC Rv0678_pal_2 sense_metA_384_from_start 12 27 + 3.04 0.0025 0.255 TTCCGCTGATCTCGAT Rv0678_pal_2 antisense_metA_391_from_start 21 36 + 3.04 0.0025 0.255 ATCGAGATCAGCGGAA Rv0678_pal_2 sense_metA_384_from_start 12 27 - 3.04 0.0025 0.255 ATCGAGATCAGCGGAA Rv0678_pal_2 antisense_metA_391_from_start 21 36 - 3.04 0.0025 0.255 TTCCGCTGATCTCGAT Rv3736_nonpal_1 sense_gca_460_from_start 1 15 - 4.84058 0.00251 0.626 CAGCATGTCGGTGGC Rv1846c_nonpal_1 antisense_frdA_787_from_start 13 34 + -11.5851 0.00251 0.308 AATCCTGGAGGTAGCGGTAGCC Rv2250c_pal_1 antisense_metA_391_from_start 13 19 + 6.14706 0.00252 0.497 GGTCACG Rv2250c_pal_1 antisense_metA_391_from_start 13 19 - 6.14706 0.00252 0.497 CGTGACC Rv2250c_pal_1 antisense_aldA_642_from_start 22 28 + 6.14706 0.00252 0.497 GGTGACG Rv2250c_pal_1 antisense_aldA_642_from_start 22 28 - 6.14706 0.00252 0.497 CGTCACC Rv2250c_pal_1 sense_metA_384_from_start 29 35 + 6.14706 0.00252 0.497 CGTGACC Rv2250c_pal_1 sense_bioB_253_to_stop 34 40 + 6.14706 0.00252 0.497 GGTGACG Rv2250c_pal_1 sense_metA_384_from_start 29 35 - 6.14706 0.00252 0.497 GGTCACG Rv2250c_pal_1 sense_bioB_253_to_stop 34 40 - 6.14706 0.00252 0.497 CGTCACC Rv3488_pal_1 sense_PPE24_1352_to_stop 17 24 + 0.838235 0.00252 0.236 GGGTATCA Rv3488_pal_1 sense_PPE24_1277_to_stop 17 24 + 0.838235 0.00252 0.236 GGGTATCA Rv3488_pal_1 sense_PPE24_1577_to_stop 17 24 + 0.838235 0.00252 0.236 GGGTATCA Rv3488_pal_1 sense_PPE24_1277_to_stop 17 24 - 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 antisense_PPE24_1345_to_stop 24 31 + 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 antisense_PPE24_1270_to_stop 24 31 + 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 antisense_PPE24_1570_to_stop 24 31 + 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 sense_PPE24_1577_to_stop 17 24 - 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 sense_PPE24_1352_to_stop 17 24 - 0.838235 0.00252 0.236 TGATACCC Rv3488_pal_1 antisense_PPE24_1570_to_stop 24 31 - 0.838235 0.00252 0.236 GGGTATCA Rv3488_pal_1 antisense_PPE24_1345_to_stop 24 31 - 0.838235 0.00252 0.236 GGGTATCA Rv3488_pal_1 antisense_PPE24_1270_to_stop 24 31 - 0.838235 0.00252 0.236 GGGTATCA Rv2506_nonpal_1 antisense_rocA_790_to_stop 20 38 + -1.98936 0.00252 0.425 GATATTGGTACCCACCCAC Rv2506_nonpal_1 sense_rocA_797_to_stop 10 28 - -1.98936 0.00252 0.425 GATATTGGTACCCACCCAC Rv3557c_nonpal_1 sense_metA_384_from_start 1 20 - -13.0288 0.00252 0.341 TCAGCGGAAATCTTGAGCCC Rv0494_nonpal_1 antisense_Rv1461_416_from_start 5 24 - -0.111111 0.00252 1 AGCTGGAGTAGCCGCACAAT Rv0967_nonpal_2 sense_pks9_325_to_stop 14 34 - -13.8298 0.00252 1 AACCGATAGCCATCTGGAGAC Rv1404_nonpal_1 13078_down_of_Rv3190c 3 28 - 2 0.00253 0.0612 GATTGGTGTACTTTGTGCTTTGACGG Rv1404_nonpal_1 4999_down_of_Rv3180c 3 28 - 2 0.00253 0.0612 GATTGGTGTACTTTGTGCTTTGACGG Rv1404_nonpal_1 8506_up_of_Rv3186 3 28 - 2 0.00253 0.0612 GATTGGTGTACTTTGTGCTTTGACGG Rv1404_nonpal_1 10041_up_of_Rv3188 3 28 - 2 0.00253 0.0612 GATTGGTGTACTTTGTGCTTTGACGG Rv1404_nonpal_1 3360_up_of_Rv3179 3 28 - 2 0.00253 0.0612 GATTGGTGTACTTTGTGCTTTGACGG Rv1353c_nonpal_1 13071_down_of_Rv3190c 1 15 + 5.45455 0.00253 0.204 AGACCTCCTACAGTA Rv1353c_nonpal_1 3353_up_of_Rv3179 1 15 + 5.45455 0.00253 0.204 AGACCTCCTACAGTA Rv1353c_nonpal_1 10034_up_of_Rv3188 1 15 + 5.45455 0.00253 0.204 AGACCTCCTACAGTA Rv1353c_nonpal_1 4992_down_of_Rv3180c 1 15 + 5.45455 0.00253 0.204 AGACCTCCTACAGTA Rv1353c_nonpal_1 8499_up_of_Rv3186 1 15 + 5.45455 0.00253 0.204 AGACCTCCTACAGTA Rv0275c_nonpal_1 antisense_pyrC_541_to_stop 4 29 - -10.9615 0.00253 0.142 TATTTCGATCACCGCCGAGGTCACCC Rv3133c_nonpal_1 sense_pyrC_548_to_stop 2 16 - 5.08696 0.00253 0.35 CTGGTCCTTAGCCCA Rv1846c_nonpal_1 antisense_PPE24_1345_to_stop 10 31 + -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv1846c_nonpal_1 antisense_PPE24_1570_to_stop 10 31 + -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv1846c_nonpal_1 antisense_PPE24_1270_to_stop 10 31 + -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv1846c_nonpal_1 sense_PPE24_1577_to_stop 17 38 - -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv1846c_nonpal_1 sense_PPE24_1277_to_stop 17 38 - -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv1846c_nonpal_1 sense_PPE24_1352_to_stop 17 38 - -11.6277 0.00254 0.308 AAAGCCACCGATTGTGATACCC Rv0818_nonpal_1 sense_pks6_423_from_start 7 27 + -2.81915 0.00254 0.406 GCGATAACAGCGTATCCAGAT Rv0818_nonpal_1 sense_pks6_424_from_start 7 27 + -2.81915 0.00254 0.406 GCGATAACAGCGTATCCAGAT Rv1556_nonpal_1 antisense_cobK_311_from_start 7 23 + -3.82979 0.00254 0.659 CGATGATGGCGGTACCG Rv0678_pal_2 7_up_of_Rv1049 8 23 + 3 0.00254 0.255 TGCCCATTACTCCAGA Rv0678_pal_2 4_up_of_Rv1049 15 30 + 3 0.00254 0.255 TCTGGAGTAATGGGCA Rv0678_pal_2 7_up_of_Rv1049 8 23 - 3 0.00254 0.255 TCTGGAGTAATGGGCA Rv0678_pal_2 4_up_of_Rv1049 15 30 - 3 0.00254 0.255 TGCCCATTACTCCAGA Rv0023_pal_1 antisense_mmpL4_1187_to_stop 7 14 + -0.189873 0.00254 0.474 CGAATTGG Rv0023_pal_1 antisense_mmpL4_1187_to_stop 7 14 - -0.189873 0.00254 0.474 CCAATTCG Rv0023_pal_1 sense_mmpL4_1184_to_stop 24 31 + -0.189873 0.00254 0.474 CCAATTCG Rv0023_pal_1 sense_mmpL4_1184_to_stop 24 31 - -0.189873 0.00254 0.474 CGAATTGG Rv0302_pal_1 sense_pyrC_548_to_stop 17 28 + 5.47794 0.00254 0.249 GGTATTTCGATC Rv0302_pal_1 antisense_pyrC_541_to_stop 20 31 + 5.47794 0.00254 0.249 GATCGAAATACC Rv0302_pal_1 sense_pyrC_548_to_stop 17 28 - 5.47794 0.00254 0.249 GATCGAAATACC Rv0302_pal_1 antisense_pyrC_541_to_stop 20 31 - 5.47794 0.00254 0.249 GGTATTTCGATC Rv3488_nonpal_2 antisense_aldA_642_from_start 3 30 + -30.0213 0.00254 0.182 CCAAAGCGTGACTGCTGGAGGTGACGAT Rv0302_nonpal_1 sense_Rv1461_475_from_start 25 39 + 4.47826 0.00254 0.322 CAAGGAGTCATATTT Rv3416_nonpal_1 antisense_PPE34_1661_from_start 13 37 + -5.10309 0.00255 0.484 AATCTGGAGGGAATCCGGGGAAAAA Rv3416_nonpal_1 sense_PPE34_3066_to_stop 1 25 - -5.10309 0.00255 0.484 AATCTGGAGGGAATCCGGGGAAAAA Rv3416_nonpal_1 sense_PPE34_1664_from_start 1 25 - -5.10309 0.00255 0.484 AATCTGGAGGGAATCCGGGGAAAAA Rv3416_nonpal_1 sense_PPE34_1439_from_start 1 25 - -5.10309 0.00255 0.484 AATCTGGAGGGAATCCGGGGAAAAA Rv0691c_pal_1 sense_PE_PGRS57_112_from_start 21 32 + 5.15942 0.00255 0.129 GGTGCTGGCTGC Rv0691c_pal_1 sense_PE_PGRS54_112_from_start 21 32 + 5.15942 0.00255 0.129 GGTGCTGGCTGC Rv0691c_pal_1 sense_PE_PGRS57_112_from_start 21 32 - 5.15942 0.00255 0.129 GCAGCCAGCACC Rv0691c_pal_1 sense_PE_PGRS54_112_from_start 21 32 - 5.15942 0.00255 0.129 GCAGCCAGCACC Rv1353c_nonpal_1 antisense_frdA_787_from_start 17 31 + 5.43939 0.00255 0.204 CTGGAGGTAGCGGTA Rv0047c_nonpal_1 sense_pks9_325_to_stop 23 37 + 4.76562 0.00255 0.428 TGGCTATCGGTTTGC Rv0678_nonpal_1 antisense_metA_391_from_start 23 37 + 5.23438 0.00255 0.157 CGAGATCAGCGGAAA Rv0678_nonpal_1 sense_metA_384_from_start 11 25 - 5.23438 0.00255 0.157 CGAGATCAGCGGAAA Rv0081_nonpal_2 sense_mmpL4_1184_to_stop 17 38 - -23.7788 0.00255 0.43 ATAGCTTCGAATTGGTCTCCAG Rv0302_pal_1 10_up_of_Rv1866 19 30 + 5.46324 0.00256 0.249 GAGGCACCGATA Rv0302_pal_1 10_up_of_Rv1866 19 30 - 5.46324 0.00256 0.249 TATCGGTGCCTC Rv3488_pal_1 antisense_cobK_311_from_start 16 23 + 0.794118 0.00256 0.236 CGGTACCG Rv3488_pal_1 antisense_cobK_311_from_start 16 23 - 0.794118 0.00256 0.236 CGGTACCG Rv3488_pal_1 sense_cobK_304_from_start 25 32 + 0.794118 0.00256 0.236 CGGTACCG Rv3488_pal_1 sense_cobK_304_from_start 25 32 - 0.794118 0.00256 0.236 CGGTACCG Rv3736_pal_1 sense_Rv1278_1158_to_stop 17 31 + 5.25714 0.00256 0.784 TGGAGAGGTCGCTGA Rv3736_pal_1 sense_Rv1278_1158_to_stop 17 31 - 5.25714 0.00256 0.784 TCAGCGACCTCTCCA Rv0273c_nonpal_2 sense_bioB_253_to_stop 1 26 + -39.2857 0.00257 0.354 ACCCCGTTCGCCGACCTGGAGGTAAT Rv3488_nonpal_2 sense_Rv0674_10_to_stop 12 39 - -30.0851 0.00257 0.182 CCAGATCACTCATGTCACCTCCAGGAGT Rv3066_pal_1 antisense_Rv1251c_1309_from_start 6 19 + 3.51136 0.00257 1 GGTACAGCGGCTCC Rv3066_pal_1 antisense_Rv1251c_1309_from_start 6 19 - 3.51136 0.00257 1 GGAGCCGCTGTACC Rv0678_nonpal_1 antisense_Rv1461_472_from_start 24 38 - 5.21875 0.00257 0.157 CCAGATCAGAGAGGA Rv0324_pal_1 10034_up_of_Rv3188 1 12 + 2.24691 0.00257 0.555 AGACCTCCTACA Rv0324_pal_1 13071_down_of_Rv3190c 1 12 + 2.24691 0.00257 0.555 AGACCTCCTACA Rv0324_pal_1 8499_up_of_Rv3186 1 12 + 2.24691 0.00257 0.555 AGACCTCCTACA Rv0324_pal_1 4992_down_of_Rv3180c 1 12 + 2.24691 0.00257 0.555 AGACCTCCTACA Rv0324_pal_1 3353_up_of_Rv3179 1 12 + 2.24691 0.00257 0.555 AGACCTCCTACA Rv0324_pal_1 10034_up_of_Rv3188 1 12 - 2.24691 0.00257 0.555 TGTAGGAGGTCT Rv0324_pal_1 8499_up_of_Rv3186 1 12 - 2.24691 0.00257 0.555 TGTAGGAGGTCT Rv0324_pal_1 4992_down_of_Rv3180c 1 12 - 2.24691 0.00257 0.555 TGTAGGAGGTCT Rv0324_pal_1 3353_up_of_Rv3179 1 12 - 2.24691 0.00257 0.555 TGTAGGAGGTCT Rv0324_pal_1 13071_down_of_Rv3190c 1 12 - 2.24691 0.00257 0.555 TGTAGGAGGTCT Rv3488_nonpal_1 10_up_of_Rv1866 26 39 - -1.22059 0.00258 0.28 GTGTCACCATATCG Rv0302_nonpal_1 sense_Rv1461_475_from_start 26 40 - 4.44928 0.00258 0.322 AAAATATGACTCCTT Rv2021c_nonpal_1 antisense_aldA_642_from_start 15 35 + 2.15663 0.00258 0.275 TGCTGGAGGTGACGATGTTGA Rv0275c_nonpal_1 sense_PPE24_1577_to_stop 4 29 - -11.0481 0.00258 0.142 GATTGTGATACCCGCGGGTATCGTCA Rv0275c_nonpal_1 sense_PPE24_1352_to_stop 4 29 - -11.0481 0.00258 0.142 GATTGTGATACCCGCGGGTATCGTCA Rv0275c_nonpal_1 sense_PPE24_1277_to_stop 4 29 - -11.0481 0.00258 0.142 GATTGTGATACCCGCGGGTATCGTCA Rv2250c_nonpal_1 sense_gca_460_from_start 14 23 + 4.82609 0.00258 0.274 TGGCGTATCA Rv2250c_nonpal_1 antisense_gca_467_from_start 25 34 - 4.82609 0.00258 0.274 TGGCGTATCA Rv0967_pal_1 antisense_cobK_311_from_start 8 14 + -2.04412 0.00258 0.53 GATGATG Rv0967_pal_1 sense_mmpL4_1184_to_stop 9 15 + -2.04412 0.00258 0.53 GATGATT Rv0967_pal_1 antisense_cobK_311_from_start 8 14 - -2.04412 0.00258 0.53 CATCATC Rv0967_pal_1 sense_mmpL4_1184_to_stop 9 15 - -2.04412 0.00258 0.53 AATCATC Rv0967_pal_1 antisense_mmpL4_1187_to_stop 23 29 + -2.04412 0.00258 0.53 AATCATC Rv0967_pal_1 antisense_mmpL4_1187_to_stop 23 29 - -2.04412 0.00258 0.53 GATGATT Rv0967_pal_1 sense_cobK_304_from_start 34 40 + -2.04412 0.00258 0.53 CATCATC Rv0967_pal_1 sense_cobK_304_from_start 34 40 - -2.04412 0.00258 0.53 GATGATG Rv0818_nonpal_1 antisense_Rv2279_293_to_stop 20 40 + -2.89362 0.00258 0.406 ACTGAGATCCCCTATCCGTAT Rv0818_nonpal_1 sense_Rv2279_300_to_stop 8 28 - -2.89362 0.00258 0.406 ACTGAGATCCCCTATCCGTAT Rv1816_nonpal_1 sense_bioB_253_to_stop 3 19 - 4.47692 0.00259 0.236 CCAGGTCGGCGAACGGG Rv1404_pal_1 sense_pks9_325_to_stop 25 37 + 5.0875 0.00259 0.186 GCTATCGGTTTGC Rv1404_pal_1 sense_pks9_325_to_stop 25 37 - 5.0875 0.00259 0.186 GCAAACCGATAGC Rv0047c_pal_1 sense_fadE7_118_to_stop 8 19 + 5.33333 0.00259 0.345 GGGATATCGCTG Rv0047c_pal_1 antisense_fadE7_121_to_stop 19 30 + 5.33333 0.00259 0.345 CAGCGATATCCC Rv0047c_pal_1 sense_fadE7_118_to_stop 8 19 - 5.33333 0.00259 0.345 CAGCGATATCCC Rv0047c_pal_1 antisense_fadE7_121_to_stop 19 30 - 5.33333 0.00259 0.345 GGGATATCGCTG Rv0302_nonpal_2 sense_metA_384_from_start 15 25 - 0.230769 0.00259 1 CGAGATCAGCG Rv0302_nonpal_2 antisense_metA_391_from_start 23 33 + 0.230769 0.00259 1 CGAGATCAGCG Rv0757_pal_1 sense_Rv0674_10_to_stop 16 29 + 5.05063 0.00259 0.719 CTGGAGGTGACATG Rv0757_pal_1 sense_Rv0674_10_to_stop 16 29 - 5.05063 0.00259 0.719 CATGTCACCTCCAG Rv1956_nonpal_1 antisense_mmpL4_1187_to_stop 7 27 + 1.0814 0.0026 0.256 CGAATTGGTCTCCAGAAATCA Rv1956_nonpal_1 sense_mmpL4_1184_to_stop 11 31 - 1.0814 0.0026 0.256 CGAATTGGTCTCCAGAAATCA Rv0081_nonpal_2 antisense_pks6_430_from_start 18 39 + -23.8942 0.00261 0.43 ACGATCTGGATACGCTGTTATC Rv0081_nonpal_2 antisense_pks6_431_from_start 18 39 + -23.8942 0.00261 0.43 ACGATCTGGATACGCTGTTATC Rv0081_nonpal_2 sense_pks6_424_from_start 9 30 - -23.8942 0.00261 0.43 ACGATCTGGATACGCTGTTATC Rv0081_nonpal_2 sense_pks6_423_from_start 9 30 - -23.8942 0.00261 0.43 ACGATCTGGATACGCTGTTATC Rv2324_pal_1 sense_fadE7_118_to_stop 6 20 + 3.75325 0.00261 0.532 ACGGGATATCGCTGG Rv2324_pal_1 antisense_fadE7_121_to_stop 18 32 + 3.75325 0.00261 0.532 CCAGCGATATCCCGT Rv2324_pal_1 sense_fadE7_118_to_stop 6 20 - 3.75325 0.00261 0.532 CCAGCGATATCCCGT Rv2324_pal_1 antisense_fadE7_121_to_stop 18 32 - 3.75325 0.00261 0.532 ACGGGATATCGCTGG Rv0195_nonpal_1 antisense_accA1_595_from_start 13 26 + 0.404255 0.00261 1 CCGCTCCAGGAATA Rv0195_nonpal_1 sense_accA1_598_from_start 12 25 - 0.404255 0.00261 1 CCGCTCCAGGAATA Rv2009_nonpal_1 7_up_of_Rv1049 12 32 + 0.924051 0.00261 0.279 CATTACTCCAGACTCGTGTAG Rv2009_nonpal_1 4_up_of_Rv1049 6 26 - 0.924051 0.00261 0.279 CATTACTCCAGACTCGTGTAG Rv0081_pal_1 sense_metA_384_from_start 5 20 + 2.88 0.00261 0.443 TCAAGATTTCCGCTGA Rv0081_pal_1 sense_metA_384_from_start 5 20 - 2.88 0.00261 0.443 TCAGCGGAAATCTTGA Rv2989_nonpal_2 sense_pks9_325_to_stop 2 16 - -0.758621 0.00262 0.991 GACGATTGCGTAGTT Rv2642_pal_1 antisense_Rv1461_559_from_start 3 23 + 2.1954 0.00262 0.651 TTATTATCGCCGGCAGGGATT Rv2642_pal_1 antisense_Rv1461_559_from_start 3 23 - 2.1954 0.00262 0.651 AATCCCTGCCGGCGATAATAA Rv0691c_pal_1 sense_Rv1461_552_from_start 17 28 + 5.08696 0.00262 0.129 GGTACAGTAATC Rv0691c_pal_1 antisense_Rv1461_559_from_start 20 31 + 5.08696 0.00262 0.129 GATTACTGTACC Rv0691c_pal_1 sense_Rv1461_552_from_start 17 28 - 5.08696 0.00262 0.129 GATTACTGTACC Rv0691c_pal_1 antisense_Rv1461_559_from_start 20 31 - 5.08696 0.00262 0.129 GGTACAGTAATC Rv2374c_nonpal_1 sense_accA1_598_from_start 10 37 - -8.875 0.00263 0.324 CCGCAACACAAACCGCTCCAGGAATAGC Rv2374c_nonpal_1 antisense_accA1_595_from_start 1 28 + -8.875 0.00263 0.324 CCGCAACACAAACCGCTCCAGGAATAGC Rv0339c_nonpal_2 antisense_mmpL4_1187_to_stop 20 40 + -9.52885 0.00263 0.7 AGAAATCATCAAAATCCGCGA Rv3557c_pal_1 37_up_of_Rv2172c 16 29 + -4.93269 0.00263 0.251 CTCCAGCGGTTGAT Rv3557c_pal_1 sense_mptA_23_from_start 16 29 + -4.93269 0.00263 0.251 CTCCAGCGGTTGAT Rv3557c_pal_1 sense_mptA_23_from_start 16 29 - -4.93269 0.00263 0.251 ATCAACCGCTGGAG Rv3557c_pal_1 37_up_of_Rv2172c 16 29 - -4.93269 0.00263 0.251 ATCAACCGCTGGAG Rv0022c_nonpal_1 sense_Rv2279_300_to_stop 12 26 - 3.61644 0.00263 0.18 TGAGATCCCCTATCC Rv0022c_nonpal_1 antisense_Rv2279_293_to_stop 22 36 + 3.61644 0.00263 0.18 TGAGATCCCCTATCC Rv0047c_nonpal_1 sense_Rv2038c_183_from_start 16 30 + 4.6875 0.00263 0.428 GGCGTATCCGGATCG Rv3249c_pal_2 antisense_frdA_787_from_start 2 16 + 2.27027 0.00263 0.166 GCCGAGGTCGTAATC Rv3249c_pal_2 antisense_frdA_787_from_start 2 16 - 2.27027 0.00263 0.166 GATTACGACCTCGGC Rv1404_nonpal_1 sense_rocA_797_to_stop 4 29 - 1.875 0.00264 0.0612 CGATATTGGTACCCACCCACTGCCAT Rv0275c_nonpal_1 sense_Rv2038c_183_from_start 3 28 + -11.1538 0.00264 0.142 ACGCTGGACTGTGGGCGTATCCGGAT Rv3676_nonpal_1 9767_down_of_Rv3190c 1 21 + -9.95192 0.00264 1 TACAGTGTCGGTTATAAGTAC Rv3676_nonpal_1 6730_up_of_Rv3188 1 21 + -9.95192 0.00264 1 TACAGTGTCGGTTATAAGTAC Rv3676_nonpal_1 1688_down_of_Rv3180c 1 21 + -9.95192 0.00264 1 TACAGTGTCGGTTATAAGTAC Rv3676_nonpal_1 5195_up_of_Rv3186 1 21 + -9.95192 0.00264 1 TACAGTGTCGGTTATAAGTAC Rv3676_nonpal_1 49_up_of_Rv3179 1 21 + -9.95192 0.00264 1 TACAGTGTCGGTTATAAGTAC Rv3855_nonpal_1 93_up_of_lpqG 7 32 - -13.1154 0.00265 1 GGGTACTGGCATCGACGGGCCCTACA Rv3849_nonpal_1 7_up_of_Rv1049 29 40 - 1.79452 0.00265 0.549 ACGTGTAGCTAC Rv1353c_nonpal_1 sense_bioB_253_to_stop 18 32 + 5.36364 0.00265 0.209 GGAGGTAATGCCGGT Rv2324_nonpal_1 sense_Rv1461_552_from_start 4 22 + 5.11594 0.00265 0.244 CAAGGAATATTTCGGTACA Rv1473A_nonpal_1 1662_up_of_Rv2018 6 19 + -3.27397 0.00265 0.381 AATCGGCCTTCTCC Rv2324_nonpal_2 antisense_mmpL4_1187_to_stop 16 30 + 2.54217 0.00265 0.598 CTCCAGAAATCATCA Rv2324_nonpal_2 sense_mmpL4_1184_to_stop 8 22 - 2.54217 0.00265 0.598 CTCCAGAAATCATCA Rv0023_pal_1 sense_pks9_325_to_stop 7 14 + -0.405063 0.00266 0.474 CGCAATCG Rv0023_pal_1 sense_pks9_325_to_stop 7 14 - -0.405063 0.00266 0.474 CGATTGCG Rv2374c_nonpal_1 antisense_Rv2279_293_to_stop 2 29 + -8.93269 0.00266 0.324 TGAACCGGATCGATGTGTACTGAGATCC Rv1816_pal_2 antisense_mmpL4_1187_to_stop 12 20 + -1.82192 0.00266 0.267 TGGTCTCCA Rv1816_pal_2 sense_mmpL4_1184_to_stop 18 26 + -1.82192 0.00266 0.267 TGGAGACCA Rv1816_pal_2 antisense_mmpL4_1187_to_stop 12 20 - -1.82192 0.00266 0.267 TGGAGACCA Rv1816_pal_2 sense_mmpL4_1184_to_stop 18 26 - -1.82192 0.00266 0.267 TGGTCTCCA Rv1049_nonpal_1 antisense_gca_467_from_start 21 35 + 4.74286 0.00267 1 ATATTGATACGCCAG Rv1049_nonpal_1 sense_gca_460_from_start 13 27 - 4.74286 0.00267 1 ATATTGATACGCCAG Rv1404_nonpal_1 13071_down_of_Rv3190c 14 39 - 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 4992_down_of_Rv3180c 14 39 - 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 8499_up_of_Rv3186 14 39 - 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 3353_up_of_Rv3179 14 39 - 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 10034_up_of_Rv3188 14 39 - 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 4999_down_of_Rv3180c 9 34 + 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 10041_up_of_Rv3188 9 34 + 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 8506_up_of_Rv3186 9 34 + 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 13078_down_of_Rv3190c 9 34 + 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1404_nonpal_1 3360_up_of_Rv3179 9 34 + 1.8375 0.00267 0.0612 AAGCACAAAGTACACCAATCGGTTTA Rv1828_nonpal_1 antisense_Rv3282_217_to_stop 9 32 - -7.18085 0.00268 0.298 GGCCTCCGATCTGGAGGCTTACCT Rv1828_nonpal_1 447_down_of_accE5 9 32 - -7.18085 0.00268 0.298 GGCCTCCGATCTGGAGGCTTACCT Rv1994c_pal_1 sense_Rv1461_552_from_start 4 18 + 4.51351 0.00268 0.118 CAAGGAATATTTCGG Rv1994c_pal_1 sense_Rv1461_552_from_start 4 18 - 4.51351 0.00268 0.118 CCGAAATATTCCTTG Rv3066_nonpal_1 1662_up_of_Rv2018 9 28 + 1.3908 0.00268 0.953 CGGCCTTCTCCAGTGAAATT Rv0494_nonpal_2 sense_Rv2038c_183_from_start 21 35 + -4.87368 0.00268 1 ATCCGGATCGGCGAG Rv3830c_nonpal_1 sense_mmpL4_1184_to_stop 20 34 + 2.7027 0.00268 0.635 GAGACCAATTCGAAG Rv3830c_nonpal_1 antisense_mmpL4_1187_to_stop 4 18 - 2.7027 0.00268 0.635 GAGACCAATTCGAAG Rv1719_nonpal_2 10_up_of_Rv1866 3 23 + 0.176471 0.00269 1 GACGGCTGTTCTGCTGGAGGC Rv1423_nonpal_1 antisense_pyrC_541_to_stop 23 33 + 3.86957 0.0027 1 CGAAATACCCT Rv1423_nonpal_1 sense_pyrC_548_to_stop 15 25 - 3.86957 0.0027 1 CGAAATACCCT Rv0275c_nonpal_1 antisense_PPE34_1661_from_start 14 39 - -11.2596 0.0027 0.142 CATTTTTCCCCGGATTCCCTCCAGAT Rv1994c_nonpal_1 5189_up_of_Rv3186 16 30 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 1682_down_of_Rv3180c 16 30 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 43_up_of_Rv3179 16 30 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 9761_down_of_Rv3190c 16 30 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 6724_up_of_Rv3188 16 30 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 5195_up_of_Rv3186 22 36 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 1688_down_of_Rv3180c 22 36 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 49_up_of_Rv3179 22 36 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 9767_down_of_Rv3190c 22 36 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 6730_up_of_Rv3188 22 36 + 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 6723_up_of_Rv3188 12 26 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 5188_up_of_Rv3186 12 26 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 9760_down_of_Rv3190c 12 26 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 1681_down_of_Rv3180c 12 26 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 42_up_of_Rv3179 12 26 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 6717_up_of_Rv3188 18 32 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 5182_up_of_Rv3186 18 32 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 9754_down_of_Rv3190c 18 32 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 1675_down_of_Rv3180c 18 32 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1994c_nonpal_1 36_up_of_Rv3179 18 32 - 4.58904 0.0027 0.148 ACCGATCAGTATACA Rv1990c_nonpal_1 sense_Rv0674_10_to_stop 23 33 + 5.24615 0.0027 1 TGACATGAGTG Rv1816_pal_1 3360_up_of_Rv3179 17 29 + 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 10041_up_of_Rv3188 17 29 + 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 4999_down_of_Rv3180c 17 29 + 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 8506_up_of_Rv3186 17 29 + 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 13078_down_of_Rv3190c 17 29 + 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 13071_down_of_Rv3190c 19 31 + 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 3353_up_of_Rv3179 19 31 + 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 4992_down_of_Rv3180c 19 31 + 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 8499_up_of_Rv3186 19 31 + 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 10034_up_of_Rv3188 19 31 + 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 3360_up_of_Rv3179 17 29 - 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 4999_down_of_Rv3180c 17 29 - 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 8506_up_of_Rv3186 17 29 - 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 10041_up_of_Rv3188 17 29 - 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 13078_down_of_Rv3190c 17 29 - 5.4 0.00271 0.144 CGATTGGTGTACT Rv1816_pal_1 3353_up_of_Rv3179 19 31 - 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 4992_down_of_Rv3180c 19 31 - 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 8499_up_of_Rv3186 19 31 - 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 10034_up_of_Rv3188 19 31 - 5.4 0.00271 0.144 AGTACACCAATCG Rv1816_pal_1 13071_down_of_Rv3190c 19 31 - 5.4 0.00271 0.144 AGTACACCAATCG Rv2642_pal_1 antisense_Rv0370c_389_from_start 1 21 + 2.10345 0.00271 0.651 CATCGATGAGCAGCACTGGAG Rv2642_pal_1 antisense_Rv0370c_389_from_start 1 21 - 2.10345 0.00271 0.651 CTCCAGTGCTGCTCATCGATG Rv0081_nonpal_2 4_up_of_Rv1049 10 31 + -24.1058 0.00271 0.43 ACGAGTCTGGAGTAATGGGCAA Rv0081_nonpal_2 7_up_of_Rv1049 7 28 - -24.1058 0.00271 0.43 ACGAGTCTGGAGTAATGGGCAA Rv2324_nonpal_1 antisense_aldA_642_from_start 17 35 - 5.07246 0.00271 0.244 TCAACATCGTCACCTCCAG Rv3681c_pal_1 antisense_aldA_642_from_start 6 19 + 4.70238 0.00271 0.409 AAGCGTGACTGCTG Rv3681c_pal_1 antisense_aldA_642_from_start 6 19 - 4.70238 0.00271 0.409 CAGCAGTCACGCTT Rv1956_nonpal_1 1662_up_of_Rv2018 4 24 + 0.94186 0.00271 0.256 TGAATCGGCCTTCTCCAGTGA Rv1404_nonpal_1 sense_Rv1461_552_from_start 4 29 - 1.7875 0.00272 0.0612 GGATTACTGTACCGAAATATTCCTTG Rv1219c_nonpal_1 antisense_Rv1461_416_from_start 7 21 - 1.87342 0.00272 0.599 TGGAGTAGCCGCACA Rv1473A_nonpal_1 antisense_mmpL4_1187_to_stop 9 22 + -3.38356 0.00272 0.381 AATTGGTCTCCAGA Rv1473A_nonpal_1 sense_mmpL4_1184_to_stop 16 29 - -3.38356 0.00272 0.381 AATTGGTCTCCAGA Rv3249c_nonpal_1 93_up_of_lpqG 14 24 - 4.625 0.00272 0.47 GCATCGACGGG Rv0135c_nonpal_1 antisense_PPE24_1570_to_stop 23 33 + 2.14062 0.00272 0.34 GTGATACCCGC Rv0135c_nonpal_1 antisense_PPE24_1345_to_stop 23 33 + 2.14062 0.00272 0.34 GTGATACCCGC Rv0135c_nonpal_1 antisense_PPE24_1270_to_stop 23 33 + 2.14062 0.00272 0.34 GTGATACCCGC Rv0135c_nonpal_1 sense_PPE24_1577_to_stop 15 25 - 2.14062 0.00272 0.34 GTGATACCCGC Rv0135c_nonpal_1 sense_PPE24_1352_to_stop 15 25 - 2.14062 0.00272 0.34 GTGATACCCGC Rv0135c_nonpal_1 sense_PPE24_1277_to_stop 15 25 - 2.14062 0.00272 0.34 GTGATACCCGC Rv0576_nonpal_1 antisense_Rv2963_530_to_stop 15 40 + 1.72727 0.00273 0.13 AGAACGATTCGGGTACCCATGCCGCG Rv0576_nonpal_1 sense_Rv2963_537_to_stop 8 33 - 1.72727 0.00273 0.13 AGAACGATTCGGGTACCCATGCCGCG Rv1219c_pal_1 antisense_Rv1461_472_from_start 9 17 + 4.34177 0.00273 0.229 CCTTGAGCC Rv1219c_pal_1 antisense_Rv1461_472_from_start 9 17 - 4.34177 0.00273 0.229 GGCTCAAGG Rv1219c_pal_1 sense_Rv1461_475_from_start 21 29 + 4.34177 0.00273 0.229 GGCTCAAGG Rv1219c_pal_1 sense_Rv1461_475_from_start 21 29 - 4.34177 0.00273 0.229 CCTTGAGCC Rv3574_nonpal_1 sense_pks6_423_from_start 16 30 - 1.86765 0.00273 0.255 ACGATCTGGATACGC Rv3574_nonpal_1 sense_pks6_424_from_start 16 30 - 1.86765 0.00273 0.255 ACGATCTGGATACGC Rv3574_nonpal_1 antisense_pks6_431_from_start 18 32 + 1.86765 0.00273 0.255 ACGATCTGGATACGC Rv3574_nonpal_1 antisense_pks6_430_from_start 18 32 + 1.86765 0.00273 0.255 ACGATCTGGATACGC Rv3249c_pal_2 sense_Rv2279_300_to_stop 1 15 + 2.13514 0.00273 0.167 ATCCACCATACGGAT Rv3249c_pal_2 sense_Rv2279_300_to_stop 1 15 - 2.13514 0.00273 0.167 ATCCGTATGGTGGAT Rv3574_pal_1 13071_down_of_Rv3190c 12 27 + 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 8499_up_of_Rv3186 12 27 + 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 4992_down_of_Rv3180c 12 27 + 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 3353_up_of_Rv3179 12 27 + 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 10034_up_of_Rv3188 12 27 + 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 3360_up_of_Rv3179 21 36 + 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 13078_down_of_Rv3190c 21 36 + 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 4999_down_of_Rv3180c 21 36 + 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 8506_up_of_Rv3186 21 36 + 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 10041_up_of_Rv3188 21 36 + 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 13071_down_of_Rv3190c 12 27 - 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 8499_up_of_Rv3186 12 27 - 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 4992_down_of_Rv3180c 12 27 - 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 10034_up_of_Rv3188 12 27 - 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 3353_up_of_Rv3179 12 27 - 3.91304 0.00273 0.245 CACCAATCGGTTTACT Rv3574_pal_1 4999_down_of_Rv3180c 21 36 - 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 8506_up_of_Rv3186 21 36 - 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 10041_up_of_Rv3188 21 36 - 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 3360_up_of_Rv3179 21 36 - 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv3574_pal_1 13078_down_of_Rv3190c 21 36 - 3.91304 0.00273 0.245 AGTAAACCGATTGGTG Rv1776c_pal_1 antisense_Rv1251c_1309_from_start 24 38 + 4.31707 0.00273 1 CCTTCAAGCTGAACG Rv1776c_pal_1 antisense_Rv1251c_1309_from_start 24 38 - 4.31707 0.00273 1 CGTTCAGCTTGAAGG Rv0472c_nonpal_1 sense_PPE34_1664_from_start 29 39 + -1.84615 0.00274 0.211 TGACAGTGAGT Rv0472c_nonpal_1 sense_PPE34_1439_from_start 29 39 + -1.84615 0.00274 0.211 TGACAGTGAGT Rv0472c_nonpal_1 sense_PPE34_3066_to_stop 29 39 + -1.84615 0.00274 0.211 TGACAGTGAGT Rv2359_pal_1 sense_pks9_325_to_stop 14 34 + -12.019 0.00274 0.143 GTCTCCAGATGGCTATCGGTT Rv2359_pal_1 sense_pks9_325_to_stop 14 34 - -12.019 0.00274 0.143 AACCGATAGCCATCTGGAGAC Rv0275c_nonpal_1 antisense_treY_785_to_stop 2 27 + -11.3365 0.00275 0.142 AGAACTGAAACGGGCTGGAGGCCCCC Rv0275c_nonpal_1 antisense_treZ_470_to_stop 2 27 + -11.3365 0.00275 0.142 AGAACTGAAACGGGCTGGAGGCCCCC Rv0275c_nonpal_1 880_up_of_treZ 2 27 + -11.3365 0.00275 0.142 AGAACTGAAACGGGCTGGAGGCCCCC Rv0275c_nonpal_1 877_up_of_treZ 11 36 - -11.3365 0.00275 0.142 AGAACTGAAACGGGCTGGAGGCCCCC Rv0275c_nonpal_1 sense_treZ_467_to_stop 11 36 - -11.3365 0.00275 0.142 AGAACTGAAACGGGCTGGAGGCCCCC Rv3133c_pal_1 antisense_accA1_595_from_start 24 39 + 4.90411 0.00275 0.965 ATAGCGTATCGTCCCC Rv3133c_pal_1 antisense_accA1_595_from_start 24 39 - 4.90411 0.00275 0.965 GGGGACGATACGCTAT Rv0691c_nonpal_2 sense_Rv1461_475_from_start 6 29 + -36.9904 0.00275 0.63 CAGAGAGGATCTGGAGGCTCAAGG Rv0691c_nonpal_2 antisense_Rv1461_472_from_start 9 32 - -36.9904 0.00275 0.63 CAGAGAGGATCTGGAGGCTCAAGG Rv2788_pal_1 antisense_mmpL4_1187_to_stop 7 28 + -0.666667 0.00275 0.217 CGAATTGGTCTCCAGAAATCAT Rv2788_pal_1 sense_mmpL4_1184_to_stop 10 31 + -0.666667 0.00275 0.217 ATGATTTCTGGAGACCAATTCG Rv2788_pal_1 antisense_mmpL4_1187_to_stop 7 28 - -0.666667 0.00275 0.217 ATGATTTCTGGAGACCAATTCG Rv2788_pal_1 sense_mmpL4_1184_to_stop 10 31 - -0.666667 0.00275 0.217 CGAATTGGTCTCCAGAAATCAT Rv1816_pal_1 sense_Rv0674_10_to_stop 25 37 + 5.36552 0.00276 0.144 ACATGAGTGATCT Rv1816_pal_1 sense_Rv0674_10_to_stop 25 37 - 5.36552 0.00276 0.144 AGATCACTCATGT Rv1167c_nonpal_1 sense_Rv1461_475_from_start 10 24 - -3.23077 0.00276 0.759 AGCCTCCAGATCCTC Rv1167c_nonpal_1 antisense_Rv1461_472_from_start 14 28 + -3.23077 0.00276 0.759 AGCCTCCAGATCCTC Rv0472c_nonpal_1 9761_down_of_Rv3190c 7 17 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 1682_down_of_Rv3180c 7 17 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 6724_up_of_Rv3188 7 17 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 43_up_of_Rv3179 7 17 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 5189_up_of_Rv3186 7 17 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 49_up_of_Rv3179 13 23 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 1688_down_of_Rv3180c 13 23 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 5195_up_of_Rv3186 13 23 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 9767_down_of_Rv3190c 13 23 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 6730_up_of_Rv3188 13 23 + -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 5188_up_of_Rv3186 25 35 - -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 42_up_of_Rv3179 25 35 - -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 9760_down_of_Rv3190c 25 35 - -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 1681_down_of_Rv3180c 25 35 - -1.88462 0.00276 0.211 TATAAGTACAC Rv0472c_nonpal_1 6723_up_of_Rv3188 25 35 - -1.88462 0.00276 0.211 TATAAGTACAC Rv1255c_nonpal_1 antisense_PPE24_1345_to_stop 6 25 + -1.13793 0.00277 0.391 GACTAAAGCCACCGATTGTG Rv1255c_nonpal_1 antisense_PPE24_1570_to_stop 6 25 + -1.13793 0.00277 0.391 GACTAAAGCCACCGATTGTG Rv1255c_nonpal_1 antisense_PPE24_1270_to_stop 6 25 + -1.13793 0.00277 0.391 GACTAAAGCCACCGATTGTG Rv2021c_pal_1 93_up_of_lpqG 14 28 + 5.43678 0.00277 0.784 CCCGTCGATGCCAGT Rv2021c_pal_1 93_up_of_lpqG 14 28 - 5.43678 0.00277 0.784 ACTGGCATCGACGGG Rv2324_nonpal_1 antisense_aldA_642_from_start 20 38 - 5.02899 0.00277 0.244 TTGTCAACATCGTCACCTC Rv0653c_pal_1 sense_bioB_253_to_stop 14 37 + 2.96203 0.00277 0.129 ACCTGGAGGTAATGCCGGTCGGTG Rv0653c_pal_1 sense_bioB_253_to_stop 14 37 - 2.96203 0.00277 0.129 CACCGACCGGCATTACCTCCAGGT Rv1956_nonpal_1 sense_Rv1461_552_from_start 9 29 + 0.872093 0.00277 0.256 AATATTTCGGTACAGTAATCC Rv1956_nonpal_1 antisense_Rv1461_559_from_start 19 39 - 0.872093 0.00277 0.256 AATATTTCGGTACAGTAATCC Rv0880_nonpal_1 antisense_rocA_790_to_stop 2 25 + -6.08421 0.00277 0.189 ATAGCTATGGTAGCGGCCGATATT Rv1674c_pal_1 37_up_of_Rv2172c 11 32 + 1.375 0.00278 0.103 CCATGCTCCAGCGGTTGATTTG Rv1674c_pal_1 sense_mptA_23_from_start 11 32 + 1.375 0.00278 0.103 CCATGCTCCAGCGGTTGATTTG Rv1674c_pal_1 37_up_of_Rv2172c 11 32 - 1.375 0.00278 0.103 CAAATCAACCGCTGGAGCATGG Rv1674c_pal_1 sense_mptA_23_from_start 11 32 - 1.375 0.00278 0.103 CAAATCAACCGCTGGAGCATGG Rv0767c_nonpal_1 antisense_fadE7_121_to_stop 1 15 + 4.54286 0.00278 0.445 CCGGATGACCGGGTA Rv0767c_nonpal_1 sense_fadE7_118_to_stop 23 37 - 4.54286 0.00278 0.445 CCGGATGACCGGGTA Rv0691c_pal_2 10_up_of_Rv1866 18 26 + -0.468354 0.00278 0.454 GGAGGCACC Rv0691c_pal_2 10_up_of_Rv1866 18 26 - -0.468354 0.00278 0.454 GGTGCCTCC Rv2359_nonpal_1 7_up_of_Rv1049 4 31 + -19.6058 0.00278 0.167 CCTTTGCCCATTACTCCAGACTCGTGTA Rv2359_nonpal_1 4_up_of_Rv1049 7 34 - -19.6058 0.00278 0.167 CCTTTGCCCATTACTCCAGACTCGTGTA Rv0465c_pal_1 antisense_aldA_642_from_start 11 38 + -2.05682 0.00278 0.236 TGACTGCTGGAGGTGACGATGTTGACAA Rv0465c_pal_1 antisense_aldA_642_from_start 11 38 - -2.05682 0.00278 0.236 TTGTCAACATCGTCACCTCCAGCAGTCA Rv2011c_nonpal_1 sense_mmpL4_1184_to_stop 14 32 + 5.07143 0.00278 0.656 TTTCTGGAGACCAATTCGA Rv2011c_nonpal_1 antisense_mmpL4_1187_to_stop 6 24 - 5.07143 0.00278 0.656 TTTCTGGAGACCAATTCGA Rv1473A_nonpal_2 antisense_Rv0370c_389_from_start 7 14 - -1.19178 0.00278 0.221 GCTGCTCA Rv0047c_pal_1 antisense_Rv2279_293_to_stop 11 22 + 5.19697 0.00279 0.345 TCGATGTGTACT Rv0047c_pal_1 antisense_Rv2279_293_to_stop 11 22 - 5.19697 0.00279 0.345 AGTACACATCGA Rv0047c_pal_1 sense_Rv2279_300_to_stop 26 37 + 5.19697 0.00279 0.345 AGTACACATCGA Rv0047c_pal_1 sense_Rv2279_300_to_stop 26 37 - 5.19697 0.00279 0.345 TCGATGTGTACT Rv0472c_nonpal_1 antisense_frdA_787_from_start 21 31 - -1.92308 0.00279 0.211 TACCGCTACCT Rv3246c_nonpal_1 1662_up_of_Rv2018 20 39 + 2.06173 0.00279 0.197 AGTGAAATTGATACAAGATC Rv0678_nonpal_1 sense_pks6_423_from_start 4 18 - 5.0625 0.00279 0.165 CGCTGTTATCGCACA Rv0678_nonpal_1 sense_pks6_424_from_start 4 18 - 5.0625 0.00279 0.165 CGCTGTTATCGCACA Rv0023_pal_2 10041_up_of_Rv3188 11 26 + 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 13078_down_of_Rv3190c 11 26 + 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 4999_down_of_Rv3180c 11 26 + 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 3360_up_of_Rv3179 11 26 + 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 8506_up_of_Rv3186 11 26 + 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 4992_down_of_Rv3180c 22 37 + 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 8499_up_of_Rv3186 22 37 + 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 13071_down_of_Rv3190c 22 37 + 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 3353_up_of_Rv3179 22 37 + 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 10034_up_of_Rv3188 22 37 + 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 8506_up_of_Rv3186 11 26 - 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 13078_down_of_Rv3190c 11 26 - 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 4999_down_of_Rv3180c 11 26 - 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 3360_up_of_Rv3179 11 26 - 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 10041_up_of_Rv3188 11 26 - 4.31169 0.00279 0.292 TTGGTGTACTTTGTGC Rv0023_pal_2 4992_down_of_Rv3180c 22 37 - 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 13071_down_of_Rv3190c 22 37 - 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 3353_up_of_Rv3179 22 37 - 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 10034_up_of_Rv3188 22 37 - 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv0023_pal_2 8499_up_of_Rv3186 22 37 - 4.31169 0.00279 0.292 GCACAAAGTACACCAA Rv3574_nonpal_2 antisense_Rv1461_416_from_start 13 40 - -36.7778 0.00279 0.397 AGAAGCAGAGATTAGTAGCTGGAGTAGC Rv1719_nonpal_2 447_down_of_accE5 14 34 + 0.0235294 0.00279 1 AGCCTCCAGATCGGAGGCCGA Rv1719_nonpal_2 antisense_Rv3282_217_to_stop 14 34 + 0.0235294 0.00279 1 AGCCTCCAGATCGGAGGCCGA Rv2788_pal_1 antisense_aldA_642_from_start 14 35 + -0.722222 0.00279 0.217 CTGCTGGAGGTGACGATGTTGA Rv2788_pal_1 antisense_aldA_642_from_start 14 35 - -0.722222 0.00279 0.217 TCAACATCGTCACCTCCAGCAG Rv1404_pal_1 antisense_PPE24_1570_to_stop 3 15 + 4.925 0.0028 0.186 GTAGACTAAAGCC Rv1404_pal_1 antisense_PPE24_1345_to_stop 3 15 + 4.925 0.0028 0.186 GTAGACTAAAGCC Rv1404_pal_1 antisense_PPE24_1270_to_stop 3 15 + 4.925 0.0028 0.186 GTAGACTAAAGCC Rv1404_pal_1 antisense_PPE24_1570_to_stop 3 15 - 4.925 0.0028 0.186 GGCTTTAGTCTAC Rv1404_pal_1 antisense_PPE24_1270_to_stop 3 15 - 4.925 0.0028 0.186 GGCTTTAGTCTAC Rv1404_pal_1 antisense_PPE24_1345_to_stop 3 15 - 4.925 0.0028 0.186 GGCTTTAGTCTAC Rv0678_pal_2 antisense_aldA_642_from_start 23 38 + 2.74667 0.00281 0.255 GTGACGATGTTGACAA Rv0678_pal_2 antisense_aldA_642_from_start 23 38 - 2.74667 0.00281 0.255 TTGTCAACATCGTCAC Rv3249c_pal_2 sense_pks9_325_to_stop 2 16 + 2.02703 0.00281 0.167 AACTACGCAATCGTC Rv3249c_pal_2 sense_pks9_325_to_stop 2 16 - 2.02703 0.00281 0.167 GACGATTGCGTAGTT Rv1816_pal_2 antisense_metA_391_from_start 12 20 + -1.89041 0.00281 0.267 TGGTCACGT Rv1816_pal_2 antisense_metA_391_from_start 12 20 - -1.89041 0.00281 0.267 ACGTGACCA Rv1816_pal_2 antisense_aldA_642_from_start 21 29 + -1.89041 0.00281 0.267 AGGTGACGA Rv1816_pal_2 sense_metA_384_from_start 28 36 + -1.89041 0.00281 0.267 ACGTGACCA Rv1816_pal_2 antisense_aldA_642_from_start 21 29 - -1.89041 0.00281 0.267 TCGTCACCT Rv1816_pal_2 sense_metA_384_from_start 28 36 - -1.89041 0.00281 0.267 TGGTCACGT Rv3681c_nonpal_1 antisense_aldA_642_from_start 6 25 + 0.860759 0.00281 0.272 AAGCGTGACTGCTGGAGGTG Rv0273c_nonpal_2 antisense_Rv1461_416_from_start 15 40 + -42.0526 0.00281 0.354 TACTCCAGCTACTAATCTCTGCTTCT Rv3488_nonpal_1 sense_pyrC_548_to_stop 16 29 - -1.58824 0.00281 0.285 TGATCGAAATACCC Rv3488_nonpal_1 sense_pks9_325_to_stop 24 37 - -1.58824 0.00281 0.285 GCAAACCGATAGCC Rv3488_nonpal_1 antisense_pyrC_541_to_stop 19 32 + -1.58824 0.00281 0.285 TGATCGAAATACCC Rv0273c_nonpal_1 sense_Rv0674_10_to_stop 9 33 - 3.3 0.00282 0.699 CACTCATGTCACCTCCAGGAGTTGA Rv2642_pal_1 sense_rocA_797_to_stop 9 29 + 1.98851 0.00282 0.651 AGTGGGTGGGTACCAATATCG Rv2642_pal_1 antisense_rocA_790_to_stop 19 39 + 1.98851 0.00282 0.651 CGATATTGGTACCCACCCACT Rv2642_pal_1 sense_rocA_797_to_stop 9 29 - 1.98851 0.00282 0.651 CGATATTGGTACCCACCCACT Rv2642_pal_1 antisense_rocA_790_to_stop 19 39 - 1.98851 0.00282 0.651 AGTGGGTGGGTACCAATATCG Rv1956_nonpal_1 antisense_Rv1461_559_from_start 6 26 - 0.813953 0.00282 0.256 AGTAATCCCTGCCGGCGATAA Rv0691c_pal_1 1662_up_of_Rv2018 23 34 + 4.89855 0.00282 0.136 GAAATTGATACA Rv0691c_pal_1 1662_up_of_Rv2018 23 34 - 4.89855 0.00282 0.136 TGTATCAATTTC Rv0602c_nonpal_1 10_up_of_Rv1866 26 37 - 2.31507 0.00282 0.481 GTCACCATATCG Rv0135c_nonpal_2 10_up_of_Rv1866 6 33 - -21.7234 0.00283 0.464 CCATATCGGTGCCTCCAGCAGAACAGCC Rv0023_nonpal_1 5195_up_of_Rv3186 4 24 - 4.4507 0.00283 0.131 GGTGTACTTATAACCGACACT Rv0023_nonpal_1 6730_up_of_Rv3188 4 24 - 4.4507 0.00283 0.131 GGTGTACTTATAACCGACACT Rv0023_nonpal_1 49_up_of_Rv3179 4 24 - 4.4507 0.00283 0.131 GGTGTACTTATAACCGACACT Rv0023_nonpal_1 9767_down_of_Rv3190c 4 24 - 4.4507 0.00283 0.131 GGTGTACTTATAACCGACACT Rv0023_nonpal_1 1688_down_of_Rv3180c 4 24 - 4.4507 0.00283 0.131 GGTGTACTTATAACCGACACT Rv0324_pal_1 antisense_aldA_642_from_start 27 38 + 1.8642 0.00283 0.555 CGATGTTGACAA Rv0324_pal_1 antisense_aldA_642_from_start 27 38 - 1.8642 0.00283 0.555 TTGTCAACATCG Rv1473A_nonpal_1 antisense_fadE7_121_to_stop 1 14 - -3.56164 0.00284 0.381 ACCCGGTCATCCGG Rv1473A_nonpal_1 sense_fadE7_118_to_stop 24 37 + -3.56164 0.00284 0.381 ACCCGGTCATCCGG Rv0576_nonpal_1 sense_Rv1278_1158_to_stop 13 38 - 1.60227 0.00284 0.13 GGCTAGGTCAGCGACCTCTCCAGCCG Rv0117_nonpal_1 antisense_aldA_642_from_start 4 30 - -13.5577 0.00284 0.246 ATCGTCACCTCCAGCAGTCACGCTTTG Rv1473A_nonpal_2 sense_Rv1278_1158_to_stop 29 36 - -1.23288 0.00284 0.221 CTAGGTCA Rv3574_nonpal_1 antisense_pks6_430_from_start 11 25 - 1.70588 0.00284 0.255 CAGATCGTGGGTTCA Rv3574_nonpal_1 antisense_pks6_431_from_start 11 25 - 1.70588 0.00284 0.255 CAGATCGTGGGTTCA Rv3574_nonpal_1 sense_pks6_423_from_start 23 37 + 1.70588 0.00284 0.255 CAGATCGTGGGTTCA Rv3574_nonpal_1 sense_pks6_424_from_start 23 37 + 1.70588 0.00284 0.255 CAGATCGTGGGTTCA Rv0081_nonpal_1 1662_up_of_Rv2018 8 22 - 1.13333 0.00284 0.417 ACTGGAGAAGGCCGA Rv1473A_nonpal_1 antisense_Rv0370c_389_from_start 2 15 - -3.57534 0.00284 0.381 TGCTGCTCATCGAT Rv2250c_nonpal_1 sense_Rv0674_10_to_stop 20 29 + 4.50725 0.00285 0.274 AGGTGACATG Rv1049_nonpal_2 antisense_fadE7_121_to_stop 26 40 - 2.88 0.00285 0.283 GGGCGGCAACGGGAT Rv2887_pal_1 antisense_Rv1251c_1309_from_start 26 40 - 2.575 0.00285 0.382 CTCGTTCAGCTTGAA Rv1776c_nonpal_1 sense_PPE24_1577_to_stop 21 26 + 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 sense_PPE24_1277_to_stop 21 26 + 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 sense_PPE24_1352_to_stop 21 26 + 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 antisense_gca_467_from_start 17 22 - 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 sense_gca_460_from_start 26 31 + 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 antisense_PPE24_1345_to_stop 22 27 - 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 antisense_PPE24_1270_to_stop 22 27 - 5.94521 0.00285 0.802 ATCACA Rv1776c_nonpal_1 antisense_PPE24_1570_to_stop 22 27 - 5.94521 0.00285 0.802 ATCACA Rv3488_nonpal_2 antisense_PPE24_1570_to_stop 10 37 + -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3488_nonpal_2 antisense_PPE24_1345_to_stop 10 37 + -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3488_nonpal_2 antisense_PPE24_1270_to_stop 10 37 + -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3488_nonpal_2 sense_PPE24_1577_to_stop 11 38 - -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3488_nonpal_2 sense_PPE24_1352_to_stop 11 38 - -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3488_nonpal_2 sense_PPE24_1277_to_stop 11 38 - -30.7234 0.00285 0.182 AAAGCCACCGATTGTGATACCCGCGGGT Rv3249c_pal_1 sense_Rv1278_1158_to_stop 24 35 + 5.43077 0.00286 0.329 GTCGCTGACCTA Rv3249c_pal_1 sense_Rv1278_1158_to_stop 24 35 - 5.43077 0.00286 0.329 TAGGTCAGCGAC Rv3849_nonpal_1 sense_pyrC_548_to_stop 2 13 - 1.36986 0.00286 0.549 GTCCTTAGCCCA Rv1353c_nonpal_1 1662_up_of_Rv2018 23 37 + 5.21212 0.00286 0.221 GAAATTGATACAAGA Rv0047c_nonpal_2 4992_down_of_Rv3180c 2 29 - -35.6068 0.00286 0.249 TACACCAATCGGTTTACTGTAGGAGGTC Rv0047c_nonpal_2 8499_up_of_Rv3186 2 29 - -35.6068 0.00286 0.249 TACACCAATCGGTTTACTGTAGGAGGTC Rv0047c_nonpal_2 13071_down_of_Rv3190c 2 29 - -35.6068 0.00286 0.249 TACACCAATCGGTTTACTGTAGGAGGTC Rv0047c_nonpal_2 3353_up_of_Rv3179 2 29 - -35.6068 0.00286 0.249 TACACCAATCGGTTTACTGTAGGAGGTC Rv0047c_nonpal_2 10034_up_of_Rv3188 2 29 - -35.6068 0.00286 0.249 TACACCAATCGGTTTACTGTAGGAGGTC Rv1816_nonpal_2 antisense_treY_785_to_stop 11 38 + -39.9038 0.00286 0.697 ACGGGCTGGAGGCCCCCCACTCTTCGCC Rv1816_nonpal_2 antisense_treZ_470_to_stop 11 38 + -39.9038 0.00286 0.697 ACGGGCTGGAGGCCCCCCACTCTTCGCC Rv1816_nonpal_2 880_up_of_treZ 11 38 + -39.9038 0.00286 0.697 ACGGGCTGGAGGCCCCCCACTCTTCGCC Rv1473A_nonpal_1 sense_bioB_253_to_stop 17 30 + -3.60274 0.00286 0.381 TGGAGGTAATGCCG Rv3849_nonpal_1 880_up_of_treZ 29 40 + 1.35616 0.00286 0.549 ACTCTTCGCCCA Rv3849_nonpal_1 antisense_treY_785_to_stop 29 40 + 1.35616 0.00286 0.549 ACTCTTCGCCCA Rv3849_nonpal_1 antisense_treZ_470_to_stop 29 40 + 1.35616 0.00286 0.549 ACTCTTCGCCCA Rv0678_pal_2 7_up_of_Rv1049 7 22 + 2.69333 0.00286 0.255 TTGCCCATTACTCCAG Rv0678_pal_2 4_up_of_Rv1049 16 31 + 2.69333 0.00286 0.255 CTGGAGTAATGGGCAA Rv0678_pal_2 7_up_of_Rv1049 7 22 - 2.69333 0.00286 0.255 CTGGAGTAATGGGCAA Rv0678_pal_2 4_up_of_Rv1049 16 31 - 2.69333 0.00286 0.255 TTGCCCATTACTCCAG Rv2887_pal_1 antisense_Rv1251c_1309_from_start 26 40 + 2.5625 0.00286 0.382 TTCAAGCTGAACGAG Rv0767c_nonpal_2 antisense_Rv2963_530_to_stop 2 22 - 1.58228 0.00286 0.379 ATCGTTCTGGCAGAGCTTCTT Rv0767c_nonpal_2 antisense_pyrC_541_to_stop 3 23 - 1.58228 0.00286 0.379 GATCACCGCCGAGGTCACCCC Rv1719_nonpal_2 antisense_rocA_790_to_stop 1 21 + -0.0823529 0.00287 1 GATAGCTATGGTAGCGGCCGA Rv0818_pal_1 sense_fadE7_118_to_stop 11 26 + 2.16667 0.00287 0.126 ATATCGCTGGAGTACC Rv0818_pal_1 antisense_fadE7_121_to_stop 12 27 + 2.16667 0.00287 0.126 GGTACTCCAGCGATAT Rv0818_pal_1 sense_fadE7_118_to_stop 11 26 - 2.16667 0.00287 0.126 GGTACTCCAGCGATAT Rv0818_pal_1 antisense_fadE7_121_to_stop 12 27 - 2.16667 0.00287 0.126 ATATCGCTGGAGTACC Rv3574_nonpal_2 1688_down_of_Rv3180c 2 29 - -36.9573 0.00287 0.397 TGATCGGTGTACTTATAACCGACACTGT Rv3574_nonpal_2 6730_up_of_Rv3188 2 29 - -36.9573 0.00287 0.397 TGATCGGTGTACTTATAACCGACACTGT Rv3574_nonpal_2 5195_up_of_Rv3186 2 29 - -36.9573 0.00287 0.397 TGATCGGTGTACTTATAACCGACACTGT Rv3574_nonpal_2 49_up_of_Rv3179 2 29 - -36.9573 0.00287 0.397 TGATCGGTGTACTTATAACCGACACTGT Rv3574_nonpal_2 9767_down_of_Rv3190c 2 29 - -36.9573 0.00287 0.397 TGATCGGTGTACTTATAACCGACACTGT Rv2250c_nonpal_1 42_up_of_Rv3179 9 18 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 1681_down_of_Rv3180c 9 18 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 6723_up_of_Rv3188 9 18 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 5188_up_of_Rv3186 9 18 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 9760_down_of_Rv3190c 9 18 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 sense_Rv2038c_183_from_start 15 24 + 4.49275 0.00287 0.274 GGGCGTATCC Rv2250c_nonpal_1 1675_down_of_Rv3180c 15 24 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 6717_up_of_Rv3188 15 24 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 36_up_of_Rv3179 15 24 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 5182_up_of_Rv3186 15 24 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 9754_down_of_Rv3190c 15 24 + 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 6724_up_of_Rv3188 24 33 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 5189_up_of_Rv3186 24 33 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 1682_down_of_Rv3180c 24 33 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 43_up_of_Rv3179 24 33 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 9761_down_of_Rv3190c 24 33 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 6730_up_of_Rv3188 30 39 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 49_up_of_Rv3179 30 39 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 5195_up_of_Rv3186 30 39 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 1688_down_of_Rv3180c 30 39 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2250c_nonpal_1 9767_down_of_Rv3190c 30 39 - 4.49275 0.00287 0.274 CCTTGTATAC Rv2887_nonpal_1 1662_up_of_Rv2018 2 16 - 0.6 0.00288 0.519 GAAGGCCGATTCATA Rv0602c_pal_1 sense_metA_384_from_start 4 11 + 0.734177 0.00288 0.135 CTCAAGAT Rv0602c_pal_1 sense_metA_384_from_start 4 11 - 0.734177 0.00288 0.135 ATCTTGAG Rv0023_nonpal_2 antisense_cobK_311_from_start 2 29 - -35.1923 0.00288 0.288 GGATCCCGGTACCGCCATCATCGCGGTA Rv1556_nonpal_1 antisense_Rv0370c_389_from_start 11 27 - -4.3617 0.00288 0.659 CGACCCCTCCAGTGCTG Rv1473A_nonpal_2 sense_PPE34_3066_to_stop 19 26 + -1.24658 0.00288 0.221 CCAGATTA Rv1473A_nonpal_2 sense_PPE34_1439_from_start 19 26 + -1.24658 0.00288 0.221 CCAGATTA Rv1473A_nonpal_2 sense_PPE34_1664_from_start 19 26 + -1.24658 0.00288 0.221 CCAGATTA Rv1473A_nonpal_2 antisense_PPE34_1661_from_start 12 19 - -1.24658 0.00288 0.221 CCAGATTA Rv1473A_nonpal_2 sense_mptA_23_from_start 26 33 - -1.24658 0.00288 0.221 CCAAATCA Rv1473A_nonpal_2 37_up_of_Rv2172c 26 33 - -1.24658 0.00288 0.221 CCAAATCA Rv2009_nonpal_1 antisense_mmpL4_1187_to_stop 9 29 + 0.594937 0.00288 0.279 AATTGGTCTCCAGAAATCATC Rv2009_nonpal_1 sense_mmpL4_1184_to_stop 9 29 - 0.594937 0.00288 0.279 AATTGGTCTCCAGAAATCATC Rv0047c_nonpal_1 sense_pks6_424_from_start 15 29 + 4.45312 0.00289 0.428 AGCGTATCCAGATCG Rv0047c_nonpal_1 sense_pks6_423_from_start 15 29 + 4.45312 0.00289 0.428 AGCGTATCCAGATCG Rv0047c_nonpal_1 antisense_pks6_430_from_start 19 33 - 4.45312 0.00289 0.428 AGCGTATCCAGATCG Rv0047c_nonpal_1 antisense_pks6_431_from_start 19 33 - 4.45312 0.00289 0.428 AGCGTATCCAGATCG Rv0302_pal_1 sense_pks6_424_from_start 1 12 + 5.25735 0.00289 0.249 AAGTGTGCGATA Rv0302_pal_1 sense_pks6_423_from_start 1 12 + 5.25735 0.00289 0.249 AAGTGTGCGATA Rv0302_pal_1 sense_pks6_424_from_start 1 12 - 5.25735 0.00289 0.249 TATCGCACACTT Rv0302_pal_1 sense_pks6_423_from_start 1 12 - 5.25735 0.00289 0.249 TATCGCACACTT Rv2359_pal_1 sense_Rv0674_10_to_stop 14 34 + -12.2667 0.00289 0.143 TCCTGGAGGTGACATGAGTGA Rv2359_pal_1 sense_Rv0674_10_to_stop 14 34 - -12.2667 0.00289 0.143 TCACTCATGTCACCTCCAGGA Rv1816_nonpal_1 sense_pyrC_548_to_stop 22 38 - 4.21538 0.0029 0.246 CCTCGGCGGTGATCGAA Rv1816_nonpal_1 antisense_pyrC_541_to_stop 10 26 + 4.21538 0.0029 0.246 CCTCGGCGGTGATCGAA Rv0576_nonpal_1 10_up_of_Rv1866 13 38 - 1.53409 0.0029 0.13 TGTCACCATATCGGTGCCTCCAGCAG Rv2887_nonpal_1 49_up_of_Rv3179 2 16 + 0.575 0.0029 0.519 ACAGTGTCGGTTATA Rv2887_nonpal_1 9767_down_of_Rv3190c 2 16 + 0.575 0.0029 0.519 ACAGTGTCGGTTATA Rv2887_nonpal_1 5195_up_of_Rv3186 2 16 + 0.575 0.0029 0.519 ACAGTGTCGGTTATA Rv2887_nonpal_1 1688_down_of_Rv3180c 2 16 + 0.575 0.0029 0.519 ACAGTGTCGGTTATA Rv2887_nonpal_1 6730_up_of_Rv3188 2 16 + 0.575 0.0029 0.519 ACAGTGTCGGTTATA Rv0602c_nonpal_1 antisense_Rv2279_293_to_stop 7 18 - 2.19178 0.0029 0.481 CACATCGATCCG Rv3488_pal_1 antisense_cobK_311_from_start 7 14 + 0.294118 0.0029 0.258 CGATGATG Rv3488_pal_1 antisense_cobK_311_from_start 7 14 - 0.294118 0.0029 0.258 CATCATCG Rv0818_pal_1 sense_bioB_253_to_stop 24 39 + 2.13542 0.0029 0.126 AATGCCGGTCGGTGAC Rv0818_pal_1 sense_bioB_253_to_stop 24 39 - 2.13542 0.0029 0.126 GTCACCGACCGGCATT Rv1674c_nonpal_1 sense_Rv1461_552_from_start 3 20 - -6.20213 0.0029 0.357 TACCGAAATATTCCTTGA Rv3133c_nonpal_1 antisense_gca_467_from_start 3 17 + 4.7971 0.00291 0.35 CATGCCGTAAGACTT Rv3133c_nonpal_1 sense_treZ_467_to_stop 11 25 + 4.7971 0.00291 0.35 GGGGGCCTCCAGCCC Rv3133c_nonpal_1 877_up_of_treZ 11 25 + 4.7971 0.00291 0.35 GGGGGCCTCCAGCCC Rv3133c_nonpal_1 antisense_treZ_470_to_stop 13 27 - 4.7971 0.00291 0.35 GGGGGCCTCCAGCCC Rv3133c_nonpal_1 antisense_treY_785_to_stop 13 27 - 4.7971 0.00291 0.35 GGGGGCCTCCAGCCC Rv3133c_nonpal_1 880_up_of_treZ 13 27 - 4.7971 0.00291 0.35 GGGGGCCTCCAGCCC Rv0275c_nonpal_1 antisense_fadE7_121_to_stop 15 40 + -11.6058 0.00291 0.148 ACTCCAGCGATATCCCGTTGCCGCCC Rv3849_pal_1 10_up_of_Rv1866 12 19 + 6.15584 0.00291 1 TCTGCTGG Rv3849_pal_1 10_up_of_Rv1866 12 19 - 6.15584 0.00291 1 CCAGCAGA Rv1473A_nonpal_1 sense_PE_PGRS57_112_from_start 8 21 + -3.68493 0.00292 0.381 GTGCGACCACGCAG Rv1473A_nonpal_1 sense_PE_PGRS54_112_from_start 8 21 + -3.68493 0.00292 0.381 GTGCGACCACGCAG Rv0022c_nonpal_1 1682_down_of_Rv3180c 16 30 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 6724_up_of_Rv3188 16 30 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 5189_up_of_Rv3186 16 30 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 43_up_of_Rv3179 16 30 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 9761_down_of_Rv3190c 16 30 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 6730_up_of_Rv3188 22 36 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 9767_down_of_Rv3190c 22 36 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 5195_up_of_Rv3186 22 36 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 49_up_of_Rv3179 22 36 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 1688_down_of_Rv3180c 22 36 - 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 6723_up_of_Rv3188 12 26 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 5188_up_of_Rv3186 12 26 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 9760_down_of_Rv3190c 12 26 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 1681_down_of_Rv3180c 12 26 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 42_up_of_Rv3179 12 26 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 36_up_of_Rv3179 18 32 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 6717_up_of_Rv3188 18 32 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 5182_up_of_Rv3186 18 32 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 9754_down_of_Rv3190c 18 32 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv0022c_nonpal_1 1675_down_of_Rv3180c 18 32 + 3.30137 0.00292 0.18 TGTATACTGATCGGT Rv1556_nonpal_1 sense_Rv2963_537_to_stop 7 23 + -4.42553 0.00292 0.659 TCGCGGCATGGGTACCC Rv3249c_nonpal_2 sense_bioB_253_to_stop 22 36 + 3.84 0.00293 0.542 GTAATGCCGGTCGGT Rv3133c_nonpal_1 sense_pks9_325_to_stop 21 35 + 4.78261 0.00293 0.35 GATGGCTATCGGTTT Rv0023_pal_1 sense_fadE7_118_to_stop 9 16 + -0.670886 0.00294 0.474 GGATATCG Rv0023_pal_1 sense_fadE7_118_to_stop 9 16 - -0.670886 0.00294 0.474 CGATATCC Rv0023_pal_1 antisense_rocA_790_to_stop 19 26 + -0.670886 0.00294 0.474 CGATATTG Rv0023_pal_1 sense_rocA_797_to_stop 22 29 + -0.670886 0.00294 0.474 CAATATCG Rv0023_pal_1 antisense_fadE7_121_to_stop 22 29 + -0.670886 0.00294 0.474 CGATATCC Rv0023_pal_1 antisense_rocA_790_to_stop 19 26 - -0.670886 0.00294 0.474 CAATATCG Rv0023_pal_1 10_up_of_Rv1866 26 33 + -0.670886 0.00294 0.474 CGATATGG Rv0023_pal_1 antisense_fadE7_121_to_stop 22 29 - -0.670886 0.00294 0.474 GGATATCG Rv0023_pal_1 sense_rocA_797_to_stop 22 29 - -0.670886 0.00294 0.474 CGATATTG Rv0023_pal_1 10_up_of_Rv1866 26 33 - -0.670886 0.00294 0.474 CCATATCG Rv2788_nonpal_1 antisense_aldA_642_from_start 13 40 + -29.2326 0.00294 0.808 ACTGCTGGAGGTGACGATGTTGACAACG Rv2011c_nonpal_1 antisense_cobK_311_from_start 7 25 - 4.95714 0.00294 0.656 CCCGGTACCGCCATCATCG Rv0472c_nonpal_1 43_up_of_Rv3179 19 29 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 9761_down_of_Rv3190c 19 29 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 1682_down_of_Rv3180c 19 29 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 5189_up_of_Rv3186 19 29 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 6724_up_of_Rv3188 19 29 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 5188_up_of_Rv3186 13 23 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 9760_down_of_Rv3190c 13 23 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 1681_down_of_Rv3180c 13 23 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 6723_up_of_Rv3188 13 23 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 42_up_of_Rv3179 13 23 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 1688_down_of_Rv3180c 25 35 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 49_up_of_Rv3179 25 35 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 6730_up_of_Rv3188 25 35 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 9767_down_of_Rv3190c 25 35 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 5195_up_of_Rv3186 25 35 + -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 5182_up_of_Rv3186 19 29 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 9754_down_of_Rv3190c 19 29 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 6717_up_of_Rv3188 19 29 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 36_up_of_Rv3179 19 29 - -2.10577 0.00295 0.211 GATCAGTATAC Rv0472c_nonpal_1 1675_down_of_Rv3180c 19 29 - -2.10577 0.00295 0.211 GATCAGTATAC Rv3736_pal_1 sense_Rv0674_10_to_stop 9 23 + 5.01429 0.00295 0.784 TCAACTCCTGGAGGT Rv3736_pal_1 sense_Rv0674_10_to_stop 9 23 - 5.01429 0.00295 0.784 ACCTCCAGGAGTTGA Rv1674c_pal_1 antisense_PPE24_1570_to_stop 6 27 + 1.20833 0.00295 0.103 GACTAAAGCCACCGATTGTGAT Rv1674c_pal_1 antisense_PPE24_1270_to_stop 6 27 + 1.20833 0.00295 0.103 GACTAAAGCCACCGATTGTGAT Rv1674c_pal_1 antisense_PPE24_1345_to_stop 6 27 + 1.20833 0.00295 0.103 GACTAAAGCCACCGATTGTGAT Rv1674c_pal_1 antisense_PPE24_1570_to_stop 6 27 - 1.20833 0.00295 0.103 ATCACAATCGGTGGCTTTAGTC Rv1674c_pal_1 antisense_PPE24_1345_to_stop 6 27 - 1.20833 0.00295 0.103 ATCACAATCGGTGGCTTTAGTC Rv1674c_pal_1 antisense_PPE24_1270_to_stop 6 27 - 1.20833 0.00295 0.103 ATCACAATCGGTGGCTTTAGTC Rv2989_nonpal_2 sense_fadE7_118_to_stop 10 24 + -1.24138 0.00295 0.991 GATATCGCTGGAGTA Rv2989_nonpal_2 antisense_fadE7_121_to_stop 14 28 - -1.24138 0.00295 0.991 GATATCGCTGGAGTA Rv3246c_pal_1 5189_up_of_Rv3186 13 28 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 9761_down_of_Rv3190c 13 28 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 1682_down_of_Rv3180c 13 28 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 43_up_of_Rv3179 13 28 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 6724_up_of_Rv3188 13 28 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 42_up_of_Rv3179 14 29 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 6723_up_of_Rv3188 14 29 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5188_up_of_Rv3186 14 29 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 9760_down_of_Rv3190c 14 29 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 1681_down_of_Rv3180c 14 29 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 6730_up_of_Rv3188 19 34 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 1688_down_of_Rv3180c 19 34 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 49_up_of_Rv3179 19 34 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 9767_down_of_Rv3190c 19 34 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 5195_up_of_Rv3186 19 34 + 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 36_up_of_Rv3179 20 35 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5182_up_of_Rv3186 20 35 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 1675_down_of_Rv3180c 20 35 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 9754_down_of_Rv3190c 20 35 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 6717_up_of_Rv3188 20 35 + 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5189_up_of_Rv3186 13 28 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 9761_down_of_Rv3190c 13 28 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 1682_down_of_Rv3180c 13 28 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 6724_up_of_Rv3188 13 28 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 43_up_of_Rv3179 13 28 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5188_up_of_Rv3186 14 29 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 9760_down_of_Rv3190c 14 29 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 1681_down_of_Rv3180c 14 29 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 42_up_of_Rv3179 14 29 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 6723_up_of_Rv3188 14 29 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 1688_down_of_Rv3180c 19 34 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 9767_down_of_Rv3190c 19 34 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 49_up_of_Rv3179 19 34 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 6730_up_of_Rv3188 19 34 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5195_up_of_Rv3186 19 34 - 4.57317 0.00295 0.104 TATACTGATCGGTGTA Rv3246c_pal_1 5182_up_of_Rv3186 20 35 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 9754_down_of_Rv3190c 20 35 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 1675_down_of_Rv3180c 20 35 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 6717_up_of_Rv3188 20 35 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3246c_pal_1 36_up_of_Rv3179 20 35 - 4.57317 0.00295 0.104 TACACCGATCAGTATA Rv3736_nonpal_1 sense_Rv1461_552_from_start 2 16 - 4.49275 0.00296 0.626 GAAATATTCCTTGAA Rv3830c_pal_2 sense_Rv2038c_183_from_start 27 35 + 5.53247 0.00296 1 ATCGGCGAG Rv3830c_pal_2 sense_Rv2038c_183_from_start 27 35 - 5.53247 0.00296 1 CTCGCCGAT Rv1956_nonpal_1 sense_accA1_598_from_start 10 30 + 0.651163 0.00296 0.256 GCTATTCCTGGAGCGGTTTGT Rv1956_nonpal_1 antisense_accA1_595_from_start 8 28 - 0.651163 0.00296 0.256 GCTATTCCTGGAGCGGTTTGT Rv0880_nonpal_1 antisense_aldA_642_from_start 13 36 - -6.36842 0.00296 0.189 GTCAACATCGTCACCTCCAGCAGT Rv3246c_pal_1 sense_Rv0674_10_to_stop 11 26 + 4.56098 0.00297 0.104 AACTCCTGGAGGTGAC Rv3246c_pal_1 sense_Rv0674_10_to_stop 11 26 - 4.56098 0.00297 0.104 GTCACCTCCAGGAGTT Rv1404_nonpal_1 10034_up_of_Rv3188 10 35 - 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 4992_down_of_Rv3180c 10 35 - 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 3353_up_of_Rv3179 10 35 - 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 8499_up_of_Rv3186 10 35 - 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 13071_down_of_Rv3190c 10 35 - 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 4999_down_of_Rv3180c 13 38 + 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 8506_up_of_Rv3186 13 38 + 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 3360_up_of_Rv3179 13 38 + 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 10041_up_of_Rv3188 13 38 + 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv1404_nonpal_1 13078_down_of_Rv3190c 13 38 + 1.525 0.00297 0.0612 ACAAAGTACACCAATCGGTTTACTGT Rv0767c_nonpal_1 antisense_pks6_431_from_start 23 37 + 4.38571 0.00298 0.445 CTGGATACGCTGTTA Rv0767c_nonpal_1 antisense_pks6_430_from_start 23 37 + 4.38571 0.00298 0.445 CTGGATACGCTGTTA Rv0767c_nonpal_1 sense_pks6_424_from_start 11 25 - 4.38571 0.00298 0.445 CTGGATACGCTGTTA Rv0767c_nonpal_1 sense_pks6_423_from_start 11 25 - 4.38571 0.00298 0.445 CTGGATACGCTGTTA Rv0023_nonpal_2 sense_Rv2038c_183_from_start 3 30 - -35.4038 0.00298 0.288 CGATCCGGATACGCCCACAGTCCAGCGT Rv0324_nonpal_1 antisense_Rv1461_472_from_start 28 35 + -2.22059 0.00298 0.252 CTCTGATC Rv0324_nonpal_1 sense_Rv1461_475_from_start 3 10 - -2.22059 0.00298 0.252 CTCTGATC Rv3830c_nonpal_1 sense_gca_460_from_start 18 32 + 2.37838 0.00298 0.635 GTATCAATATCACAA Rv3830c_nonpal_1 antisense_gca_467_from_start 16 30 - 2.37838 0.00298 0.635 GTATCAATATCACAA Rv1473A_pal_2 sense_mmpL4_1184_to_stop 10 17 + -1.31507 0.00298 0.193 ATGATTTC Rv1473A_pal_2 sense_mmpL4_1184_to_stop 10 17 - -1.31507 0.00298 0.193 GAAATCAT Rv1473A_pal_2 antisense_gca_467_from_start 18 25 + -1.31507 0.00298 0.193 GTGATATT Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 21 28 + -1.31507 0.00298 0.193 GAAATCAT Rv1473A_pal_2 sense_gca_460_from_start 23 30 + -1.31507 0.00298 0.193 AATATCAC Rv1473A_pal_2 antisense_gca_467_from_start 18 25 - -1.31507 0.00298 0.193 AATATCAC Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 21 28 - -1.31507 0.00298 0.193 ATGATTTC Rv1473A_pal_2 sense_gca_460_from_start 23 30 - -1.31507 0.00298 0.193 GTGATATT Rv0678_pal_1 sense_mmpL4_1184_to_stop 7 13 + -2.20588 0.00299 0.428 TTGATGA Rv0678_pal_1 sense_mmpL4_1184_to_stop 7 13 - -2.20588 0.00299 0.428 TCATCAA Rv0678_pal_1 antisense_pyrC_541_to_stop 19 25 + -2.20588 0.00299 0.428 TGATCGA Rv0678_pal_1 sense_pyrC_548_to_stop 23 29 + -2.20588 0.00299 0.428 TCGATCA Rv0678_pal_1 antisense_pyrC_541_to_stop 19 25 - -2.20588 0.00299 0.428 TCGATCA Rv0678_pal_1 antisense_mmpL4_1187_to_stop 25 31 + -2.20588 0.00299 0.428 TCATCAA Rv0678_pal_1 sense_pyrC_548_to_stop 23 29 - -2.20588 0.00299 0.428 TGATCGA Rv0678_pal_1 antisense_mmpL4_1187_to_stop 25 31 - -2.20588 0.00299 0.428 TTGATGA Rv0678_pal_1 antisense_Rv1251c_1309_from_start 33 39 + -2.20588 0.00299 0.428 TGAACGA Rv0678_pal_1 antisense_Rv1251c_1309_from_start 33 39 - -2.20588 0.00299 0.428 TCGTTCA Rv0275c_nonpal_1 7_up_of_Rv1049 15 40 - -11.7404 0.00299 0.148 ACGTGTAGCTACACGAGTCTGGAGTA Rv0047c_nonpal_1 49_up_of_Rv3179 2 16 + 4.35938 0.003 0.428 ACAGTGTCGGTTATA Rv0047c_nonpal_1 1688_down_of_Rv3180c 2 16 + 4.35938 0.003 0.428 ACAGTGTCGGTTATA Rv0047c_nonpal_1 6730_up_of_Rv3188 2 16 + 4.35938 0.003 0.428 ACAGTGTCGGTTATA Rv0047c_nonpal_1 9767_down_of_Rv3190c 2 16 + 4.35938 0.003 0.428 ACAGTGTCGGTTATA Rv0047c_nonpal_1 5195_up_of_Rv3186 2 16 + 4.35938 0.003 0.428 ACAGTGTCGGTTATA Rv0135c_nonpal_1 antisense_frdA_787_from_start 25 35 - 1.84375 0.003 0.365 CGGCTACCGCT Rv0691c_nonpal_1 1662_up_of_Rv2018 19 32 - 2.03125 0.003 0.322 TATCAATTTCACTG Rv3246c_pal_1 sense_Rv2963_537_to_stop 6 21 + 4.53659 0.003 0.104 ATCGCGGCATGGGTAC Rv3246c_pal_1 sense_Rv2963_537_to_stop 6 21 - 4.53659 0.003 0.104 GTACCCATGCCGCGAT Rv0324_pal_1 sense_pks9_325_to_stop 20 31 + 1.66667 0.00301 0.555 AGATGGCTATCG Rv0324_pal_1 sense_pks9_325_to_stop 20 31 - 1.66667 0.00301 0.555 CGATAGCCATCT Rv0023_nonpal_1 antisense_mmpL4_1187_to_stop 5 25 + 4.32394 0.00301 0.131 TTCGAATTGGTCTCCAGAAAT Rv0023_nonpal_1 sense_mmpL4_1184_to_stop 13 33 - 4.32394 0.00301 0.131 TTCGAATTGGTCTCCAGAAAT Rv1353c_nonpal_1 sense_accA1_598_from_start 13 27 + 5.10606 0.00301 0.226 ATTCCTGGAGCGGTT Rv1353c_nonpal_1 antisense_accA1_595_from_start 11 25 - 5.10606 0.00301 0.226 ATTCCTGGAGCGGTT Rv1556_nonpal_1 sense_fadE7_118_to_stop 11 27 + -4.55319 0.00301 0.659 ATATCGCTGGAGTACCC Rv1556_nonpal_1 antisense_fadE7_121_to_stop 11 27 - -4.55319 0.00301 0.659 ATATCGCTGGAGTACCC Rv3246c_nonpal_1 93_up_of_lpqG 20 39 + 1.81481 0.00302 0.208 GATGCCAGTACCCCGAAATT Rv2324_nonpal_2 antisense_frdA_787_from_start 18 32 - 2.04819 0.00302 0.598 CTACCGCTACCTCCA Rv0324_nonpal_1 antisense_Rv2279_293_to_stop 9 16 + -2.26471 0.00302 0.252 GATCGATG Rv0324_nonpal_1 sense_Rv2279_300_to_stop 32 39 - -2.26471 0.00302 0.252 GATCGATG Rv3574_nonpal_1 sense_pyrC_548_to_stop 16 30 - 1.45588 0.00303 0.255 GTGATCGAAATACCC Rv3574_nonpal_1 antisense_pyrC_541_to_stop 18 32 + 1.45588 0.00303 0.255 GTGATCGAAATACCC Rv2021c_nonpal_1 1662_up_of_Rv2018 9 29 - 1.63855 0.00303 0.313 CAATTTCACTGGAGAAGGCCG Rv0465c_pal_2 7_up_of_Rv1049 7 14 + 2 0.00303 0.957 TTGCCCAT Rv0465c_pal_2 7_up_of_Rv1049 7 14 - 2 0.00303 0.957 ATGGGCAA Rv0465c_pal_2 4_up_of_Rv1049 24 31 + 2 0.00303 0.957 ATGGGCAA Rv0465c_pal_2 4_up_of_Rv1049 24 31 - 2 0.00303 0.957 TTGCCCAT Rv0967_pal_2 antisense_cobK_311_from_start 13 23 + -0.658228 0.00303 0.887 TGGCGGTACCG Rv0967_pal_2 antisense_cobK_311_from_start 13 23 - -0.658228 0.00303 0.887 CGGTACCGCCA Rv0967_pal_2 sense_cobK_304_from_start 25 35 + -0.658228 0.00303 0.887 CGGTACCGCCA Rv0967_pal_2 sense_cobK_304_from_start 25 35 - -0.658228 0.00303 0.887 TGGCGGTACCG Rv2250c_nonpal_1 sense_pks6_424_from_start 14 23 + 4.34783 0.00303 0.274 CAGCGTATCC Rv2250c_nonpal_1 sense_pks6_423_from_start 14 23 + 4.34783 0.00303 0.274 CAGCGTATCC Rv2250c_nonpal_1 antisense_pks6_431_from_start 25 34 - 4.34783 0.00303 0.274 CAGCGTATCC Rv2250c_nonpal_1 antisense_pks6_430_from_start 25 34 - 4.34783 0.00303 0.274 CAGCGTATCC Rv0081_nonpal_1 antisense_pks6_431_from_start 1 15 - 0.906667 0.00304 0.417 GTTCACGAATGCTGG Rv0081_nonpal_1 antisense_pks6_430_from_start 1 15 - 0.906667 0.00304 0.417 GTTCACGAATGCTGG Rv1255c_nonpal_1 sense_pks9_325_to_stop 11 30 - -1.50575 0.00304 0.391 GATAGCCATCTGGAGACGAT Rv1473A_nonpal_2 antisense_metA_391_from_start 10 17 + -1.31507 0.00304 0.222 CCTGGTCA Rv1473A_nonpal_2 sense_Rv1461_475_from_start 12 19 - -1.31507 0.00304 0.222 CCAGATCC Rv1473A_nonpal_2 antisense_Rv1461_472_from_start 19 26 + -1.31507 0.00304 0.222 CCAGATCC Rv1473A_nonpal_2 sense_metA_384_from_start 31 38 - -1.31507 0.00304 0.222 CCTGGTCA Rv1674c_pal_1 sense_accA1_598_from_start 3 24 + 1.125 0.00304 0.103 ACGATACGCTATTCCTGGAGCG Rv1674c_pal_1 antisense_accA1_595_from_start 14 35 + 1.125 0.00304 0.103 CGCTCCAGGAATAGCGTATCGT Rv1674c_pal_1 sense_accA1_598_from_start 3 24 - 1.125 0.00304 0.103 CGCTCCAGGAATAGCGTATCGT Rv1674c_pal_1 antisense_accA1_595_from_start 14 35 - 1.125 0.00304 0.103 ACGATACGCTATTCCTGGAGCG Rv0273c_pal_1 antisense_fadE7_121_to_stop 5 20 + 2.6125 0.00304 0.442 ATGACCGGGTACTCCA Rv0273c_pal_1 sense_fadE7_118_to_stop 18 33 + 2.6125 0.00304 0.442 TGGAGTACCCGGTCAT Rv0273c_pal_1 antisense_fadE7_121_to_stop 5 20 - 2.6125 0.00304 0.442 TGGAGTACCCGGTCAT Rv0273c_pal_1 sense_fadE7_118_to_stop 18 33 - 2.6125 0.00304 0.442 ATGACCGGGTACTCCA Rv3736_pal_1 sense_Rv1461_475_from_start 5 19 + 4.95 0.00304 0.784 TCAGAGAGGATCTGG Rv3736_pal_1 antisense_Rv1461_472_from_start 19 33 + 4.95 0.00304 0.784 CCAGATCCTCTCTGA Rv3736_pal_1 sense_Rv1461_475_from_start 5 19 - 4.95 0.00304 0.784 CCAGATCCTCTCTGA Rv3736_pal_1 antisense_Rv1461_472_from_start 19 33 - 4.95 0.00304 0.784 TCAGAGAGGATCTGG Rv0602c_nonpal_1 antisense_mmpL4_1187_to_stop 20 31 - 1.9589 0.00305 0.481 TTGATGATTTCT Rv0602c_nonpal_1 sense_mmpL4_1184_to_stop 7 18 + 1.9589 0.00305 0.481 TTGATGATTTCT Rv2011c_nonpal_1 antisense_frdA_787_from_start 12 30 - 4.88571 0.00305 0.656 ACCGCTACCTCCAGGATTA Rv3249c_nonpal_1 4999_down_of_Rv3180c 2 12 - 4.3125 0.00305 0.47 GCTTTGACGGT Rv3249c_nonpal_1 8506_up_of_Rv3186 2 12 - 4.3125 0.00305 0.47 GCTTTGACGGT Rv3249c_nonpal_1 10041_up_of_Rv3188 2 12 - 4.3125 0.00305 0.47 GCTTTGACGGT Rv3249c_nonpal_1 13078_down_of_Rv3190c 2 12 - 4.3125 0.00305 0.47 GCTTTGACGGT Rv3249c_nonpal_1 3360_up_of_Rv3179 2 12 - 4.3125 0.00305 0.47 GCTTTGACGGT Rv0023_nonpal_2 sense_Rv0674_10_to_stop 11 38 - -35.5577 0.00305 0.288 CAGATCACTCATGTCACCTCCAGGAGTT Rv0081_nonpal_1 sense_Rv1278_1158_to_stop 15 29 + 0.88 0.00306 0.417 GCTGGAGAGGTCGCT Rv0023_nonpal_2 antisense_Rv3282_217_to_stop 11 38 + -35.5769 0.00306 0.288 GTAAGCCTCCAGATCGGAGGCCGAAGGT Rv0023_nonpal_2 447_down_of_accE5 11 38 + -35.5769 0.00306 0.288 GTAAGCCTCCAGATCGGAGGCCGAAGGT Rv1956_nonpal_1 antisense_Rv1461_559_from_start 5 25 - 0.534884 0.00306 0.256 GTAATCCCTGCCGGCGATAAT Rv0576_nonpal_1 37_up_of_Rv2172c 13 38 - 1.35227 0.00307 0.13 TGTAGCCAAATCAACCGCTGGAGCAT Rv0576_nonpal_1 sense_mptA_23_from_start 13 38 - 1.35227 0.00307 0.13 TGTAGCCAAATCAACCGCTGGAGCAT Rv0494_nonpal_2 10_up_of_Rv1866 7 21 - -5.45263 0.00307 1 CTCCAGCAGAACAGC Rv0047c_nonpal_1 93_up_of_lpqG 13 27 - 4.29688 0.00307 0.428 CTGGCATCGACGGGC Rv1816_nonpal_1 sense_Rv1278_1158_to_stop 20 36 - 4.07692 0.00307 0.246 CTAGGTCAGCGACCTCT Rv3681c_nonpal_1 antisense_Rv1251c_1309_from_start 21 40 + 0.556962 0.00308 0.272 GCGCCTTCAAGCTGAACGAG Rv0880_nonpal_1 sense_Rv1461_552_from_start 5 28 + -6.53684 0.00308 0.189 AAGGAATATTTCGGTACAGTAATC Rv1473A_nonpal_1 antisense_PPE24_1270_to_stop 15 28 + -3.91781 0.00308 0.381 CACCGATTGTGATA Rv1473A_nonpal_1 antisense_PPE24_1345_to_stop 15 28 + -3.91781 0.00308 0.381 CACCGATTGTGATA Rv1473A_nonpal_1 antisense_PPE24_1570_to_stop 15 28 + -3.91781 0.00308 0.381 CACCGATTGTGATA Rv1473A_nonpal_1 sense_PPE24_1277_to_stop 20 33 - -3.91781 0.00308 0.381 CACCGATTGTGATA Rv1473A_nonpal_1 sense_PPE24_1352_to_stop 20 33 - -3.91781 0.00308 0.381 CACCGATTGTGATA Rv1473A_nonpal_1 sense_PPE24_1577_to_stop 20 33 - -3.91781 0.00308 0.381 CACCGATTGTGATA Rv0757_pal_1 10_up_of_Rv1866 5 18 + 4.67089 0.00308 0.719 CGGCTGTTCTGCTG Rv0757_pal_1 10_up_of_Rv1866 5 18 - 4.67089 0.00308 0.719 CAGCAGAACAGCCG Rv3066_nonpal_1 antisense_aldA_642_from_start 13 32 - 0.931034 0.00309 0.985 ACATCGTCACCTCCAGCAGT Rv0135c_pal_1 antisense_gca_467_from_start 6 15 + 5.07812 0.00309 0.278 GCCGTAAGAC Rv0135c_pal_1 antisense_gca_467_from_start 6 15 - 5.07812 0.00309 0.278 GTCTTACGGC Rv3246c_pal_1 antisense_cobK_311_from_start 12 27 + 4.46341 0.00309 0.104 ATGGCGGTACCGGGAT Rv3246c_pal_1 sense_cobK_304_from_start 21 36 + 4.46341 0.00309 0.104 ATCCCGGTACCGCCAT Rv3246c_pal_1 antisense_cobK_311_from_start 12 27 - 4.46341 0.00309 0.104 ATCCCGGTACCGCCAT Rv3246c_pal_1 sense_cobK_304_from_start 21 36 - 4.46341 0.00309 0.104 ATGGCGGTACCGGGAT Rv3849_nonpal_1 antisense_rocA_790_to_stop 2 13 - 0.890411 0.00309 0.549 TACCATAGCTAT Rv0302_pal_1 antisense_rocA_790_to_stop 12 23 + 5.13235 0.0031 0.249 TAGCGGCCGATA Rv0302_pal_1 antisense_rocA_790_to_stop 12 23 - 5.13235 0.0031 0.249 TATCGGCCGCTA Rv0302_pal_1 sense_rocA_797_to_stop 25 36 + 5.13235 0.0031 0.249 TATCGGCCGCTA Rv0302_pal_1 sense_rocA_797_to_stop 25 36 - 5.13235 0.0031 0.249 TAGCGGCCGATA Rv3765c_nonpal_1 antisense_Rv1461_559_from_start 4 23 - -7.03158 0.00311 0.484 AATCCCTGCCGGCGATAATA Rv0023_pal_2 1662_up_of_Rv2018 18 33 + 4.03896 0.00311 0.292 CCAGTGAAATTGATAC Rv0023_pal_2 1662_up_of_Rv2018 18 33 - 4.03896 0.00311 0.292 GTATCAATTTCACTGG Rv0273c_nonpal_2 antisense_Rv1461_559_from_start 8 33 - -42.9925 0.00311 0.354 TCGGTACAGTAATCCCTGCCGGCGAT Rv0273c_nonpal_2 antisense_mmpL4_1187_to_stop 14 39 - -42.9925 0.00311 0.354 CGCGGATTTTGATGATTTCTGGAGAC Rv0273c_nonpal_2 sense_Rv1461_552_from_start 15 40 + -42.9925 0.00311 0.354 TCGGTACAGTAATCCCTGCCGGCGAT Rv1990c_pal_1 antisense_frdA_787_from_start 8 22 + 5.23529 0.00311 1 GTCGTAATCCTGGAG Rv1990c_pal_1 antisense_frdA_787_from_start 8 22 - 5.23529 0.00311 1 CTCCAGGATTACGAC Rv0275c_nonpal_1 sense_pks6_424_from_start 1 26 + -11.9231 0.00311 0.148 AAGTGTGCGATAACAGCGTATCCAGA Rv0275c_nonpal_1 sense_pks6_423_from_start 1 26 + -11.9231 0.00311 0.148 AAGTGTGCGATAACAGCGTATCCAGA Rv3574_nonpal_1 antisense_Rv1461_472_from_start 13 27 - 1.33824 0.00311 0.255 AGGATCTGGAGGCTC Rv3574_nonpal_1 sense_Rv1461_475_from_start 11 25 + 1.33824 0.00311 0.255 AGGATCTGGAGGCTC Rv0047c_nonpal_2 sense_pks6_424_from_start 4 31 + -36.1197 0.00312 0.249 TGTGCGATAACAGCGTATCCAGATCGTG Rv0047c_nonpal_2 sense_pks6_423_from_start 4 31 + -36.1197 0.00312 0.249 TGTGCGATAACAGCGTATCCAGATCGTG Rv3133c_nonpal_1 sense_fadE7_118_to_stop 26 40 + 4.65217 0.00312 0.356 CCGGTCATCCGGCAC Rv2009_nonpal_1 antisense_Rv2279_293_to_stop 15 35 + 0.329114 0.00312 0.279 TGTGTACTGAGATCCCCTATC Rv2009_nonpal_1 sense_Rv2279_300_to_stop 13 33 - 0.329114 0.00312 0.279 TGTGTACTGAGATCCCCTATC Rv0023_pal_2 antisense_pyrC_541_to_stop 6 21 + 4.02597 0.00312 0.292 GTGACCTCGGCGGTGA Rv0023_pal_2 antisense_pyrC_541_to_stop 6 21 - 4.02597 0.00312 0.292 TCACCGCCGAGGTCAC Rv2989_nonpal_2 antisense_aldA_642_from_start 16 30 + -1.47126 0.00313 0.991 GCTGGAGGTGACGAT Rv0691c_nonpal_1 sense_Rv0674_10_to_stop 20 33 - 1.85938 0.00313 0.322 CACTCATGTCACCT Rv1423_nonpal_2 antisense_frdA_787_from_start 4 23 + -19.734 0.00313 1 CGAGGTCGTAATCCTGGAGG Rv0880_nonpal_1 antisense_mmpL4_1187_to_stop 5 28 + -6.61053 0.00313 0.189 TTCGAATTGGTCTCCAGAAATCAT Rv0880_nonpal_1 sense_mmpL4_1184_to_stop 10 33 - -6.61053 0.00313 0.189 TTCGAATTGGTCTCCAGAAATCAT Rv3849_pal_1 antisense_Rv1461_416_from_start 19 26 + 5.85714 0.00313 1 CCAGCTAC Rv3849_pal_1 antisense_Rv1461_416_from_start 19 26 - 5.85714 0.00313 1 GTAGCTGG Rv1956_nonpal_1 sense_pks6_424_from_start 9 29 + 0.453488 0.00314 0.256 GATAACAGCGTATCCAGATCG Rv1956_nonpal_1 sense_pks6_423_from_start 9 29 + 0.453488 0.00314 0.256 GATAACAGCGTATCCAGATCG Rv1956_nonpal_1 antisense_pks6_431_from_start 19 39 - 0.453488 0.00314 0.256 GATAACAGCGTATCCAGATCG Rv1956_nonpal_1 antisense_pks6_430_from_start 19 39 - 0.453488 0.00314 0.256 GATAACAGCGTATCCAGATCG Rv2506_pal_1 sense_fadE7_118_to_stop 10 25 + 0.336842 0.00314 0.374 GATATCGCTGGAGTAC Rv2506_pal_1 antisense_fadE7_121_to_stop 13 28 + 0.336842 0.00314 0.374 GTACTCCAGCGATATC Rv2506_pal_1 sense_fadE7_118_to_stop 10 25 - 0.336842 0.00314 0.374 GTACTCCAGCGATATC Rv2506_pal_1 antisense_fadE7_121_to_stop 13 28 - 0.336842 0.00314 0.374 GATATCGCTGGAGTAC Rv2250c_nonpal_1 sense_pks9_325_to_stop 10 19 + 4.24638 0.00314 0.278 AATCGTCTCC Rv3830c_pal_2 antisense_gca_467_from_start 3 11 + 5.36364 0.00314 1 CATGCCGTA Rv3830c_pal_2 antisense_gca_467_from_start 3 11 - 5.36364 0.00314 1 TACGGCATG Rv0967_nonpal_2 sense_PE_PGRS54_112_from_start 17 37 - -14.9574 0.00314 1 CGCCCGCAGCCAGCACCTGCG Rv0967_nonpal_2 sense_PE_PGRS57_112_from_start 17 37 - -14.9574 0.00314 1 CGCCCGCAGCCAGCACCTGCG Rv3681c_nonpal_1 880_up_of_treZ 5 24 + 0.481013 0.00315 0.272 ACTGAAACGGGCTGGAGGCC Rv3681c_nonpal_1 antisense_treY_785_to_stop 5 24 + 0.481013 0.00315 0.272 ACTGAAACGGGCTGGAGGCC Rv3681c_nonpal_1 antisense_treZ_470_to_stop 5 24 + 0.481013 0.00315 0.272 ACTGAAACGGGCTGGAGGCC Rv3681c_nonpal_1 877_up_of_treZ 14 33 - 0.481013 0.00315 0.272 ACTGAAACGGGCTGGAGGCC Rv3681c_nonpal_1 sense_treZ_467_to_stop 14 33 - 0.481013 0.00315 0.272 ACTGAAACGGGCTGGAGGCC Rv2034_nonpal_1 antisense_metA_391_from_start 11 21 + 5.30882 0.00315 0.359 CTGGTCACGTA Rv2034_nonpal_1 sense_metA_384_from_start 27 37 - 5.30882 0.00315 0.359 CTGGTCACGTA Rv0047c_nonpal_2 8499_up_of_Rv3186 3 30 + -36.1795 0.00315 0.249 ACCTCCTACAGTAAACCGATTGGTGTAC Rv0047c_nonpal_2 13071_down_of_Rv3190c 3 30 + -36.1795 0.00315 0.249 ACCTCCTACAGTAAACCGATTGGTGTAC Rv0047c_nonpal_2 3353_up_of_Rv3179 3 30 + -36.1795 0.00315 0.249 ACCTCCTACAGTAAACCGATTGGTGTAC Rv0047c_nonpal_2 4992_down_of_Rv3180c 3 30 + -36.1795 0.00315 0.249 ACCTCCTACAGTAAACCGATTGGTGTAC Rv0047c_nonpal_2 10034_up_of_Rv3188 3 30 + -36.1795 0.00315 0.249 ACCTCCTACAGTAAACCGATTGGTGTAC Rv1990c_pal_1 antisense_aldA_642_from_start 22 36 + 5.20588 0.00315 1 GGTGACGATGTTGAC Rv1990c_pal_1 antisense_aldA_642_from_start 22 36 - 5.20588 0.00315 1 GTCAACATCGTCACC Rv2011c_nonpal_1 sense_Rv0674_10_to_stop 17 35 - 4.81429 0.00315 0.656 ATCACTCATGTCACCTCCA Rv0135c_pal_1 sense_PPE24_1352_to_stop 16 25 + 5 0.00315 0.278 CGGGTATCAC Rv0135c_pal_1 sense_PPE24_1277_to_stop 16 25 + 5 0.00315 0.278 CGGGTATCAC Rv0135c_pal_1 sense_PPE24_1577_to_stop 16 25 + 5 0.00315 0.278 CGGGTATCAC Rv0135c_pal_1 antisense_PPE24_1345_to_stop 23 32 + 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 antisense_PPE24_1270_to_stop 23 32 + 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 antisense_PPE24_1570_to_stop 23 32 + 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 sense_PPE24_1577_to_stop 16 25 - 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 sense_PPE24_1277_to_stop 16 25 - 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 sense_PPE24_1352_to_stop 16 25 - 5 0.00315 0.278 GTGATACCCG Rv0135c_pal_1 antisense_PPE24_1345_to_stop 23 32 - 5 0.00315 0.278 CGGGTATCAC Rv0135c_pal_1 antisense_PPE24_1270_to_stop 23 32 - 5 0.00315 0.278 CGGGTATCAC Rv0135c_pal_1 antisense_PPE24_1570_to_stop 23 32 - 5 0.00315 0.278 CGGGTATCAC Rv2250c_pal_1 antisense_pyrC_541_to_stop 5 11 + 3.79412 0.00316 0.497 GGTGACC Rv2250c_pal_1 antisense_pyrC_541_to_stop 5 11 - 3.79412 0.00316 0.497 GGTCACC Rv0023_nonpal_1 36_up_of_Rv3179 5 25 - 4.22535 0.00316 0.131 AGTATACAAGGAGTCGGCGTG Rv0023_nonpal_1 1675_down_of_Rv3180c 5 25 - 4.22535 0.00316 0.131 AGTATACAAGGAGTCGGCGTG Rv0023_nonpal_1 5182_up_of_Rv3186 5 25 - 4.22535 0.00316 0.131 AGTATACAAGGAGTCGGCGTG Rv0023_nonpal_1 6717_up_of_Rv3188 5 25 - 4.22535 0.00316 0.131 AGTATACAAGGAGTCGGCGTG Rv0023_nonpal_1 9754_down_of_Rv3190c 5 25 - 4.22535 0.00316 0.131 AGTATACAAGGAGTCGGCGTG Rv3133c_nonpal_1 sense_Rv2038c_183_from_start 6 20 + 4.62319 0.00316 0.356 CTGGACTGTGGGCGT Rv3574_nonpal_1 sense_mptA_23_from_start 25 39 + 1.27941 0.00316 0.255 TTGATTTGGCTACAG Rv3574_nonpal_1 37_up_of_Rv2172c 25 39 + 1.27941 0.00316 0.255 TTGATTTGGCTACAG Rv0324_nonpal_1 antisense_Rv0370c_389_from_start 5 12 - -2.30882 0.00316 0.259 TGCTCATC Rv0135c_nonpal_2 antisense_aldA_642_from_start 9 36 + -22.3404 0.00316 0.464 CGTGACTGCTGGAGGTGACGATGTTGAC Rv1846c_nonpal_1 sense_treZ_467_to_stop 15 36 - -12.6915 0.00317 0.313 AGAACTGAAACGGGCTGGAGGC Rv1846c_nonpal_1 877_up_of_treZ 15 36 - -12.6915 0.00317 0.313 AGAACTGAAACGGGCTGGAGGC Rv1846c_nonpal_1 antisense_treZ_470_to_stop 2 23 + -12.6915 0.00317 0.313 AGAACTGAAACGGGCTGGAGGC Rv1846c_nonpal_1 antisense_treY_785_to_stop 2 23 + -12.6915 0.00317 0.313 AGAACTGAAACGGGCTGGAGGC Rv1846c_nonpal_1 880_up_of_treZ 2 23 + -12.6915 0.00317 0.313 AGAACTGAAACGGGCTGGAGGC Rv1674c_pal_1 antisense_PPE24_1570_to_stop 10 31 + 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv1674c_pal_1 antisense_PPE24_1345_to_stop 10 31 + 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv1674c_pal_1 antisense_PPE24_1270_to_stop 10 31 + 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv1674c_pal_1 sense_PPE24_1577_to_stop 17 38 + 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 sense_PPE24_1277_to_stop 17 38 + 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 sense_PPE24_1352_to_stop 17 38 + 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 antisense_PPE24_1570_to_stop 10 31 - 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 antisense_PPE24_1345_to_stop 10 31 - 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 antisense_PPE24_1270_to_stop 10 31 - 1.01042 0.00317 0.103 GGGTATCACAATCGGTGGCTTT Rv1674c_pal_1 sense_PPE24_1577_to_stop 17 38 - 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv1674c_pal_1 sense_PPE24_1352_to_stop 17 38 - 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv1674c_pal_1 sense_PPE24_1277_to_stop 17 38 - 1.01042 0.00317 0.103 AAAGCCACCGATTGTGATACCC Rv0324_pal_1 antisense_aldA_642_from_start 18 29 + 1.48148 0.00318 0.555 TGGAGGTGACGA Rv0324_pal_1 antisense_aldA_642_from_start 18 29 - 1.48148 0.00318 0.555 TCGTCACCTCCA Rv3246c_nonpal_1 sense_pks9_325_to_stop 5 24 + 1.65432 0.00318 0.215 TACGCAATCGTCTCCAGATG Rv0967_nonpal_2 antisense_rocA_790_to_stop 19 39 + -15.0213 0.00318 1 CGATATTGGTACCCACCCACT Rv0967_nonpal_2 sense_rocA_797_to_stop 9 29 - -15.0213 0.00318 1 CGATATTGGTACCCACCCACT Rv0023_pal_2 sense_bioB_253_to_stop 8 23 + 3.97403 0.00319 0.292 TCGCCGACCTGGAGGT Rv0023_pal_2 sense_bioB_253_to_stop 8 23 - 3.97403 0.00319 0.292 ACCTCCAGGTCGGCGA Rv0022c_nonpal_1 sense_rocA_797_to_stop 16 30 - 3.0137 0.00319 0.191 CCGATATTGGTACCC Rv0022c_nonpal_1 antisense_rocA_790_to_stop 18 32 + 3.0137 0.00319 0.191 CCGATATTGGTACCC Rv1776c_nonpal_1 antisense_Rv1461_559_from_start 8 13 + 5.93151 0.00319 0.802 ATCGCC Rv1776c_nonpal_1 sense_Rv1461_552_from_start 35 40 - 5.93151 0.00319 0.802 ATCGCC Rv0691c_nonpal_1 sense_Rv0674_10_to_stop 17 30 + 1.76562 0.0032 0.322 TGGAGGTGACATGA Rv2642_nonpal_1 sense_rocA_797_to_stop 4 28 + -2.90698 0.0032 0.254 ATGGCAGTGGGTGGGTACCAATATC Rv1674c_nonpal_1 sense_Rv0674_10_to_stop 1 18 + -6.64894 0.00321 0.357 GATGCAACTCAACTCCTG Rv0653c_pal_1 antisense_gca_467_from_start 1 24 + 2.56962 0.00322 0.129 TGCATGCCGTAAGACTTGTGATAT Rv0653c_pal_1 antisense_gca_467_from_start 1 24 - 2.56962 0.00322 0.129 ATATCACAAGTCTTACGGCATGCA Rv1167c_nonpal_1 sense_Rv1278_1158_to_stop 20 34 - -3.82692 0.00322 0.759 AGGTCAGCGACCTCT Rv0653c_pal_1 1662_up_of_Rv2018 15 38 + 2.55696 0.00323 0.129 TCTCCAGTGAAATTGATACAAGAT Rv0653c_pal_1 1662_up_of_Rv2018 15 38 - 2.55696 0.00323 0.129 ATCTTGTATCAATTTCACTGGAGA Rv1255c_nonpal_1 antisense_accA1_595_from_start 7 26 + -1.74713 0.00323 0.391 CACAAACCGCTCCAGGAATA Rv1255c_nonpal_1 sense_Rv2038c_183_from_start 9 28 + -1.74713 0.00323 0.391 GACTGTGGGCGTATCCGGAT Rv1255c_nonpal_1 antisense_Rv1461_559_from_start 20 39 + -1.74713 0.00323 0.391 GATTACTGTACCGAAATATT Rv1255c_nonpal_1 sense_Rv1461_552_from_start 9 28 - -1.74713 0.00323 0.391 GATTACTGTACCGAAATATT Rv1255c_nonpal_1 sense_accA1_598_from_start 12 31 - -1.74713 0.00323 0.391 CACAAACCGCTCCAGGAATA Rv3676_nonpal_1 sense_Rv0674_10_to_stop 3 23 + -10.8846 0.00324 1 TGCAACTCAACTCCTGGAGGT Rv3249c_nonpal_2 sense_mmpL4_1184_to_stop 22 36 + 3.54667 0.00324 0.542 GACCAATTCGAAGCT Rv3249c_nonpal_2 antisense_mmpL4_1187_to_stop 2 16 - 3.54667 0.00324 0.542 GACCAATTCGAAGCT Rv3246c_pal_1 880_up_of_treZ 8 23 + 4.35366 0.00324 0.104 GAAACGGGCTGGAGGC Rv3246c_pal_1 antisense_treZ_470_to_stop 8 23 + 4.35366 0.00324 0.104 GAAACGGGCTGGAGGC Rv3246c_pal_1 antisense_treY_785_to_stop 8 23 + 4.35366 0.00324 0.104 GAAACGGGCTGGAGGC Rv3246c_pal_1 877_up_of_treZ 15 30 + 4.35366 0.00324 0.104 GCCTCCAGCCCGTTTC Rv3246c_pal_1 sense_treZ_467_to_stop 15 30 + 4.35366 0.00324 0.104 GCCTCCAGCCCGTTTC Rv3246c_pal_1 880_up_of_treZ 8 23 - 4.35366 0.00324 0.104 GCCTCCAGCCCGTTTC Rv3246c_pal_1 antisense_treZ_470_to_stop 8 23 - 4.35366 0.00324 0.104 GCCTCCAGCCCGTTTC Rv3246c_pal_1 antisense_treY_785_to_stop 8 23 - 4.35366 0.00324 0.104 GCCTCCAGCCCGTTTC Rv3246c_pal_1 sense_treZ_467_to_stop 15 30 - 4.35366 0.00324 0.104 GAAACGGGCTGGAGGC Rv3246c_pal_1 877_up_of_treZ 15 30 - 4.35366 0.00324 0.104 GAAACGGGCTGGAGGC Rv1776c_nonpal_1 1662_up_of_Rv2018 22 27 - 5.65753 0.00324 0.802 ATTTCA Rv0023_nonpal_1 antisense_cobK_311_from_start 8 28 + 4.16901 0.00324 0.131 GATGATGGCGGTACCGGGATC Rv0023_nonpal_1 sense_cobK_304_from_start 20 40 - 4.16901 0.00324 0.131 GATGATGGCGGTACCGGGATC Rv1473A_pal_2 sense_Rv1461_475_from_start 11 18 + -1.38356 0.00325 0.2 AGGATCTG Rv1473A_pal_2 sense_Rv1461_475_from_start 11 18 - -1.38356 0.00325 0.2 CAGATCCT Rv1473A_pal_2 antisense_Rv1461_472_from_start 20 27 + -1.38356 0.00325 0.2 CAGATCCT Rv1473A_pal_2 antisense_Rv1461_472_from_start 20 27 - -1.38356 0.00325 0.2 AGGATCTG Rv0691c_nonpal_1 7_up_of_Rv1049 25 38 - 1.70312 0.00325 0.322 GTGTAGCTACACGA Rv0602c_nonpal_1 7_up_of_Rv1049 20 31 - 1.67123 0.00325 0.481 TACACGAGTCTG Rv0602c_nonpal_1 4_up_of_Rv1049 7 18 + 1.67123 0.00325 0.481 TACACGAGTCTG Rv2788_pal_1 antisense_pks6_431_from_start 3 24 + -1.27778 0.00325 0.228 AGCATTCGTGAACCCACGATCT Rv2788_pal_1 antisense_pks6_430_from_start 3 24 + -1.27778 0.00325 0.228 AGCATTCGTGAACCCACGATCT Rv2788_pal_1 antisense_pks6_431_from_start 3 24 - -1.27778 0.00325 0.228 AGATCGTGGGTTCACGAATGCT Rv2788_pal_1 antisense_pks6_430_from_start 3 24 - -1.27778 0.00325 0.228 AGATCGTGGGTTCACGAATGCT Rv0757_nonpal_1 antisense_Rv1461_416_from_start 4 24 - 1.18987 0.00325 0.595 AGCTGGAGTAGCCGCACAATA Rv0967_nonpal_2 sense_bioB_253_to_stop 3 23 + -15.1277 0.00325 1 CCCGTTCGCCGACCTGGAGGT Rv3557c_pal_1 sense_pks9_325_to_stop 3 16 + -5.80769 0.00325 0.298 ACTACGCAATCGTC Rv3557c_pal_1 sense_pks9_325_to_stop 3 16 - -5.80769 0.00325 0.298 GACGATTGCGTAGT Rv3488_pal_1 antisense_aldA_642_from_start 33 40 + -0.147059 0.00326 0.28 TGACAACG Rv3488_pal_1 antisense_aldA_642_from_start 33 40 - -0.147059 0.00326 0.28 CGTTGTCA Rv0602c_nonpal_1 13071_down_of_Rv3190c 18 29 - 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 3353_up_of_Rv3179 18 29 - 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 10034_up_of_Rv3188 18 29 - 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 8499_up_of_Rv3186 18 29 - 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 4992_down_of_Rv3180c 18 29 - 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 3360_up_of_Rv3179 19 30 + 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 10041_up_of_Rv3188 19 30 + 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 8506_up_of_Rv3186 19 30 + 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 13078_down_of_Rv3190c 19 30 + 1.65753 0.00326 0.481 TACACCAATCGG Rv0602c_nonpal_1 4999_down_of_Rv3180c 19 30 + 1.65753 0.00326 0.481 TACACCAATCGG Rv3765c_nonpal_1 sense_gca_460_from_start 17 36 - -7.24211 0.00326 0.484 AGACTTGTGATATTGATACG Rv3765c_nonpal_1 antisense_gca_467_from_start 12 31 + -7.24211 0.00326 0.484 AGACTTGTGATATTGATACG Rv1353c_pal_2 37_up_of_Rv2172c 2 28 + -35.7778 0.00326 0.385 TACTCCGAGCCATGCTCCAGCGGTTGA Rv1353c_pal_2 sense_mptA_23_from_start 2 28 + -35.7778 0.00326 0.385 TACTCCGAGCCATGCTCCAGCGGTTGA Rv1353c_pal_2 sense_mptA_23_from_start 2 28 - -35.7778 0.00326 0.385 TCAACCGCTGGAGCATGGCTCGGAGTA Rv1353c_pal_2 37_up_of_Rv2172c 2 28 - -35.7778 0.00326 0.385 TCAACCGCTGGAGCATGGCTCGGAGTA Rv0678_nonpal_1 sense_Rv0674_10_to_stop 9 23 + 4.75 0.00326 0.183 TCAACTCCTGGAGGT Rv2250c_nonpal_1 1662_up_of_Rv2018 1 10 + 4.14493 0.00327 0.284 CTATGAATCG Rv2788_nonpal_1 93_up_of_lpqG 13 40 + -29.8837 0.00327 0.808 GCCCGTCGATGCCAGTACCCCGAAATTC Rv2887_nonpal_1 93_up_of_lpqG 7 21 - 0.175 0.00327 0.519 TCGACGGGCCCTACA Rv0022c_nonpal_1 antisense_pyrC_541_to_stop 17 31 - 2.93151 0.00328 0.191 GGTATTTCGATCACC Rv0022c_nonpal_1 sense_pyrC_548_to_stop 17 31 + 2.93151 0.00328 0.191 GGTATTTCGATCACC Rv2011c_pal_1 sense_gca_460_from_start 5 19 + 5.04167 0.00328 0.592 CCGACATGCTGGCGT Rv2011c_pal_1 sense_gca_460_from_start 5 19 - 5.04167 0.00328 0.592 ACGCCAGCATGTCGG Rv1219c_pal_1 antisense_Rv1251c_1309_from_start 24 32 + 3.77215 0.00328 0.267 CCTTCAAGC Rv1219c_pal_1 antisense_Rv1251c_1309_from_start 24 32 - 3.77215 0.00328 0.267 GCTTGAAGG Rv0981_nonpal_2 9754_down_of_Rv3190c 5 25 - -2.4 0.00328 0.467 AGTATACAAGGAGTCGGCGTG Rv0981_nonpal_2 1675_down_of_Rv3180c 5 25 - -2.4 0.00328 0.467 AGTATACAAGGAGTCGGCGTG Rv0981_nonpal_2 36_up_of_Rv3179 5 25 - -2.4 0.00328 0.467 AGTATACAAGGAGTCGGCGTG Rv0981_nonpal_2 6717_up_of_Rv3188 5 25 - -2.4 0.00328 0.467 AGTATACAAGGAGTCGGCGTG Rv0981_nonpal_2 5182_up_of_Rv3186 5 25 - -2.4 0.00328 0.467 AGTATACAAGGAGTCGGCGTG Rv3574_nonpal_1 3353_up_of_Rv3179 12 26 - 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 13071_down_of_Rv3190c 12 26 - 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 8499_up_of_Rv3186 12 26 - 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 4992_down_of_Rv3180c 12 26 - 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 10034_up_of_Rv3188 12 26 - 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 3360_up_of_Rv3179 22 36 + 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 4999_down_of_Rv3180c 22 36 + 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 8506_up_of_Rv3186 22 36 + 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 13078_down_of_Rv3190c 22 36 + 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv3574_nonpal_1 10041_up_of_Rv3188 22 36 + 1.11765 0.00329 0.255 ACCAATCGGTTTACT Rv0880_nonpal_1 sense_bioB_253_to_stop 7 30 - -6.83158 0.00329 0.189 CGGCATTACCTCCAGGTCGGCGAA Rv0678_nonpal_1 sense_pks6_424_from_start 8 22 + 4.73438 0.00329 0.183 CGATAACAGCGTATC Rv0678_nonpal_1 sense_pks6_423_from_start 8 22 + 4.73438 0.00329 0.183 CGATAACAGCGTATC Rv0678_nonpal_1 antisense_pks6_431_from_start 26 40 - 4.73438 0.00329 0.183 CGATAACAGCGTATC Rv0678_nonpal_1 antisense_pks6_430_from_start 26 40 - 4.73438 0.00329 0.183 CGATAACAGCGTATC Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 18 36 + 0.632911 0.00329 0.18 CCAGCGATATCCCGTTGCC Rv0653c_nonpal_1 sense_fadE7_118_to_stop 2 20 - 0.632911 0.00329 0.18 CCAGCGATATCCCGTTGCC Rv0653c_nonpal_1 antisense_frdA_787_from_start 3 21 - 0.632911 0.00329 0.18 TCCAGGATTACGACCTCGG Rv0494_nonpal_2 sense_bioB_253_to_stop 17 31 + -5.76842 0.00329 1 TGGAGGTAATGCCGG Rv2788_pal_2 antisense_pyrC_541_to_stop 8 28 + -1.47917 0.00329 0.523 GACCTCGGCGGTGATCGAAAT Rv2788_pal_2 sense_pyrC_548_to_stop 20 40 + -1.47917 0.00329 0.523 ATTTCGATCACCGCCGAGGTC Rv2788_pal_2 antisense_pyrC_541_to_stop 8 28 - -1.47917 0.00329 0.523 ATTTCGATCACCGCCGAGGTC Rv2788_pal_2 sense_pyrC_548_to_stop 20 40 - -1.47917 0.00329 0.523 GACCTCGGCGGTGATCGAAAT Rv3736_nonpal_1 93_up_of_lpqG 17 31 - 4.26087 0.00329 0.626 GGTACTGGCATCGAC Rv1473A_nonpal_2 antisense_Rv0370c_389_from_start 4 11 - -1.43836 0.0033 0.238 GCTCATCG Rv2359_pal_1 sense_gca_460_from_start 12 32 + -12.8667 0.00331 0.143 GCTGGCGTATCAATATCACAA Rv2359_pal_1 antisense_gca_467_from_start 16 36 + -12.8667 0.00331 0.143 TTGTGATATTGATACGCCAGC Rv2359_pal_1 sense_gca_460_from_start 12 32 - -12.8667 0.00331 0.143 TTGTGATATTGATACGCCAGC Rv2359_pal_1 antisense_gca_467_from_start 16 36 - -12.8667 0.00331 0.143 GCTGGCGTATCAATATCACAA Rv1353c_nonpal_2 antisense_Rv1461_416_from_start 2 22 - -37.1282 0.00331 0.318 CTGGAGTAGCCGCACAATACG Rv1353c_nonpal_2 sense_pks9_325_to_stop 7 27 - -37.1282 0.00331 0.318 AGCCATCTGGAGACGATTGCG Rv1353c_nonpal_2 sense_Rv2963_537_to_stop 11 31 - -37.1282 0.00331 0.318 AACGATTCGGGTACCCATGCC Rv1353c_nonpal_2 antisense_Rv1461_472_from_start 11 31 - -37.1282 0.00331 0.318 AGAGAGGATCTGGAGGCTCAA Rv1353c_nonpal_2 sense_Rv1461_475_from_start 7 27 + -37.1282 0.00331 0.318 AGAGAGGATCTGGAGGCTCAA Rv1353c_nonpal_2 antisense_Rv2963_530_to_stop 17 37 + -37.1282 0.00331 0.318 AACGATTCGGGTACCCATGCC Rv0494_nonpal_1 antisense_Rv0370c_389_from_start 16 35 - -1.07407 0.00331 1 CCGCGGACCGACCCCTCCAG Rv1846c_nonpal_1 4_up_of_Rv1049 4 25 - -12.9043 0.00331 0.313 ATTACTCCAGACTCGTGTAGCT Rv1846c_nonpal_1 7_up_of_Rv1049 13 34 + -12.9043 0.00331 0.313 ATTACTCCAGACTCGTGTAGCT Rv1255c_nonpal_1 sense_Rv1461_552_from_start 6 25 + -1.85057 0.00332 0.391 AGGAATATTTCGGTACAGTA Rv3488_nonpal_1 antisense_aldA_642_from_start 21 34 - -2.27941 0.00332 0.313 CAACATCGTCACCT Rv0275c_nonpal_1 antisense_frdA_787_from_start 15 40 - -12.2212 0.00332 0.154 AAAGACGGCTACCGCTACCTCCAGGA Rv3849_nonpal_2 antisense_aldA_642_from_start 8 35 - -13.9767 0.00332 1 TCAACATCGTCACCTCCAGCAGTCACGC Rv2887_pal_1 antisense_Rv2279_293_to_stop 1 15 - 2.15 0.00332 0.382 ATCGATCCGGTTCAG Rv0339c_nonpal_2 antisense_treZ_470_to_stop 9 29 + -10.6154 0.00332 0.7 AAACGGGCTGGAGGCCCCCCA Rv0339c_nonpal_2 antisense_treY_785_to_stop 9 29 + -10.6154 0.00332 0.7 AAACGGGCTGGAGGCCCCCCA Rv0339c_nonpal_2 880_up_of_treZ 9 29 + -10.6154 0.00332 0.7 AAACGGGCTGGAGGCCCCCCA Rv0339c_nonpal_2 sense_treZ_467_to_stop 9 29 - -10.6154 0.00332 0.7 AAACGGGCTGGAGGCCCCCCA Rv0339c_nonpal_2 877_up_of_treZ 9 29 - -10.6154 0.00332 0.7 AAACGGGCTGGAGGCCCCCCA Rv0022c_pal_1 sense_Rv1461_552_from_start 10 31 + 3.02703 0.00333 0.168 ATATTTCGGTACAGTAATCCCT Rv0022c_pal_1 antisense_Rv1461_559_from_start 17 38 + 3.02703 0.00333 0.168 AGGGATTACTGTACCGAAATAT Rv0022c_pal_1 sense_PPE34_3066_to_stop 18 39 + 3.02703 0.00333 0.168 TCCAGATTACGTGACAGTGAGT Rv0022c_pal_1 sense_PPE34_1664_from_start 18 39 + 3.02703 0.00333 0.168 TCCAGATTACGTGACAGTGAGT Rv0022c_pal_1 sense_PPE34_1439_from_start 18 39 + 3.02703 0.00333 0.168 TCCAGATTACGTGACAGTGAGT Rv0022c_pal_1 sense_Rv1461_552_from_start 10 31 - 3.02703 0.00333 0.168 AGGGATTACTGTACCGAAATAT Rv0022c_pal_1 antisense_Rv1461_559_from_start 17 38 - 3.02703 0.00333 0.168 ATATTTCGGTACAGTAATCCCT Rv0022c_pal_1 sense_PPE34_1664_from_start 18 39 - 3.02703 0.00333 0.168 ACTCACTGTCACGTAATCTGGA Rv0022c_pal_1 sense_PPE34_1439_from_start 18 39 - 3.02703 0.00333 0.168 ACTCACTGTCACGTAATCTGGA Rv0022c_pal_1 sense_PPE34_3066_to_stop 18 39 - 3.02703 0.00333 0.168 ACTCACTGTCACGTAATCTGGA Rv0135c_nonpal_1 sense_PPE24_1577_to_stop 6 16 + 1.40625 0.00333 0.378 ACGATACCCGC Rv0135c_nonpal_1 sense_PPE24_1352_to_stop 6 16 + 1.40625 0.00333 0.378 ACGATACCCGC Rv0135c_nonpal_1 sense_PPE24_1277_to_stop 6 16 + 1.40625 0.00333 0.378 ACGATACCCGC Rv0678_pal_2 antisense_pyrC_541_to_stop 12 27 + 2.29333 0.00333 0.272 TCGGCGGTGATCGAAA Rv0678_pal_2 sense_pyrC_548_to_stop 21 36 + 2.29333 0.00333 0.272 TTTCGATCACCGCCGA Rv0678_pal_2 antisense_pyrC_541_to_stop 12 27 - 2.29333 0.00333 0.272 TTTCGATCACCGCCGA Rv0678_pal_2 sense_pyrC_548_to_stop 21 36 - 2.29333 0.00333 0.272 TCGGCGGTGATCGAAA Rv0691c_nonpal_1 3360_up_of_Rv3179 12 25 + 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 10041_up_of_Rv3188 12 25 + 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 13078_down_of_Rv3190c 12 25 + 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 4999_down_of_Rv3180c 12 25 + 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 8506_up_of_Rv3186 12 25 + 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 3353_up_of_Rv3179 23 36 - 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 13071_down_of_Rv3190c 23 36 - 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 10034_up_of_Rv3188 23 36 - 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 4992_down_of_Rv3180c 23 36 - 1.59375 0.00333 0.322 CACAAAGTACACCA Rv0691c_nonpal_1 8499_up_of_Rv3186 23 36 - 1.59375 0.00333 0.322 CACAAAGTACACCA Rv1049_nonpal_2 antisense_Rv1251c_1309_from_start 7 21 + 2.33333 0.00333 0.324 GTACAGCGGCTCCAG Rv2887_pal_1 antisense_Rv2279_293_to_stop 1 15 + 2.1375 0.00334 0.382 CTGAACCGGATCGAT Rv0135c_nonpal_2 antisense_aldA_642_from_start 6 33 + -22.6489 0.00334 0.464 AAGCGTGACTGCTGGAGGTGACGATGTT Rv2788_pal_2 sense_Rv2963_537_to_stop 11 31 + -1.53125 0.00334 0.523 GGCATGGGTACCCGAATCGTT Rv2788_pal_2 antisense_Rv2963_530_to_stop 17 37 + -1.53125 0.00334 0.523 AACGATTCGGGTACCCATGCC Rv2788_pal_2 sense_Rv2963_537_to_stop 11 31 - -1.53125 0.00334 0.523 AACGATTCGGGTACCCATGCC Rv2788_pal_2 antisense_Rv2963_530_to_stop 17 37 - -1.53125 0.00334 0.523 GGCATGGGTACCCGAATCGTT Rv0691c_nonpal_1 antisense_PPE24_1570_to_stop 18 31 + 1.57812 0.00335 0.322 CGATTGTGATACCC Rv0691c_nonpal_1 antisense_PPE24_1345_to_stop 18 31 + 1.57812 0.00335 0.322 CGATTGTGATACCC Rv0691c_nonpal_1 antisense_PPE24_1270_to_stop 18 31 + 1.57812 0.00335 0.322 CGATTGTGATACCC Rv0691c_nonpal_1 sense_PPE24_1277_to_stop 17 30 - 1.57812 0.00335 0.322 CGATTGTGATACCC Rv0691c_nonpal_1 sense_PPE24_1577_to_stop 17 30 - 1.57812 0.00335 0.322 CGATTGTGATACCC Rv0691c_nonpal_1 sense_PPE24_1352_to_stop 17 30 - 1.57812 0.00335 0.322 CGATTGTGATACCC Rv3488_nonpal_1 sense_bioB_253_to_stop 20 33 - -2.32353 0.00335 0.313 GACCGGCATTACCT Rv2359_nonpal_1 sense_fadE7_118_to_stop 4 31 + -20.5962 0.00335 0.188 CAACGGGATATCGCTGGAGTACCCGGTC Rv2359_nonpal_1 antisense_fadE7_121_to_stop 7 34 - -20.5962 0.00335 0.188 CAACGGGATATCGCTGGAGTACCCGGTC Rv2506_nonpal_1 antisense_gca_467_from_start 9 27 + -3.08511 0.00335 0.425 GTAAGACTTGTGATATTGA Rv2506_nonpal_1 sense_gca_460_from_start 21 39 - -3.08511 0.00335 0.425 GTAAGACTTGTGATATTGA Rv2021c_nonpal_1 antisense_mmpL4_1187_to_stop 20 40 + 1.3012 0.00335 0.337 AGAAATCATCAAAATCCGCGA Rv0047c_nonpal_2 1662_up_of_Rv2018 7 34 - -36.5726 0.00336 0.255 TGTATCAATTTCACTGGAGAAGGCCGAT Rv0022c_pal_1 antisense_pyrC_541_to_stop 7 28 + 3 0.00336 0.168 TGACCTCGGCGGTGATCGAAAT Rv0022c_pal_1 antisense_pyrC_541_to_stop 7 28 - 3 0.00336 0.168 ATTTCGATCACCGCCGAGGTCA Rv3124_nonpal_1 antisense_Rv2279_293_to_stop 1 27 + -15 0.00337 0.443 CTGAACCGGATCGATGTGTACTGAGAT Rv0602c_nonpal_1 sense_fadE7_118_to_stop 29 40 + 1.49315 0.00337 0.481 GTCATCCGGCAC Rv0653c_pal_1 antisense_gca_467_from_start 10 33 + 2.44304 0.00337 0.129 TAAGACTTGTGATATTGATACGCC Rv0653c_pal_1 sense_gca_460_from_start 15 38 + 2.44304 0.00337 0.129 GGCGTATCAATATCACAAGTCTTA Rv0653c_pal_1 antisense_gca_467_from_start 10 33 - 2.44304 0.00337 0.129 GGCGTATCAATATCACAAGTCTTA Rv0653c_pal_1 sense_gca_460_from_start 15 38 - 2.44304 0.00337 0.129 TAAGACTTGTGATATTGATACGCC Rv1846c_nonpal_1 7_up_of_Rv1049 12 33 - -12.9894 0.00337 0.313 GCTACACGAGTCTGGAGTAATG Rv1846c_nonpal_1 4_up_of_Rv1049 5 26 + -12.9894 0.00337 0.313 GCTACACGAGTCTGGAGTAATG Rv1816_pal_1 1681_down_of_Rv3180c 12 24 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 5188_up_of_Rv3186 12 24 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 9760_down_of_Rv3190c 12 24 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 42_up_of_Rv3179 12 24 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 6723_up_of_Rv3188 12 24 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 6717_up_of_Rv3188 18 30 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 36_up_of_Rv3179 18 30 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 5182_up_of_Rv3186 18 30 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 9761_down_of_Rv3190c 18 30 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 9754_down_of_Rv3190c 18 30 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 1682_down_of_Rv3180c 18 30 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 6724_up_of_Rv3188 18 30 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 43_up_of_Rv3179 18 30 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 5189_up_of_Rv3186 18 30 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 1675_down_of_Rv3180c 18 30 + 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 5188_up_of_Rv3186 12 24 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 49_up_of_Rv3179 24 36 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 9767_down_of_Rv3190c 24 36 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 1688_down_of_Rv3180c 24 36 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 9760_down_of_Rv3190c 12 24 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 1681_down_of_Rv3180c 12 24 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 6730_up_of_Rv3188 24 36 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 6723_up_of_Rv3188 12 24 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 42_up_of_Rv3179 12 24 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 5195_up_of_Rv3186 24 36 + 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 5182_up_of_Rv3186 18 30 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 1675_down_of_Rv3180c 18 30 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 9761_down_of_Rv3190c 18 30 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 9754_down_of_Rv3190c 18 30 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 43_up_of_Rv3179 18 30 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 1682_down_of_Rv3180c 18 30 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 6724_up_of_Rv3188 18 30 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 6717_up_of_Rv3188 18 30 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 5189_up_of_Rv3186 18 30 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 36_up_of_Rv3179 18 30 - 5 0.00337 0.144 CGATCAGTATACA Rv1816_pal_1 49_up_of_Rv3179 24 36 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 1688_down_of_Rv3180c 24 36 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 9767_down_of_Rv3190c 24 36 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 6730_up_of_Rv3188 24 36 - 5 0.00337 0.144 TGTATACTGATCG Rv1816_pal_1 5195_up_of_Rv3186 24 36 - 5 0.00337 0.144 TGTATACTGATCG Rv2359_pal_1 sense_PPE24_1352_to_stop 4 24 + -12.9619 0.00338 0.143 TGACGATACCCGCGGGTATCA Rv2359_pal_1 sense_PPE24_1277_to_stop 4 24 + -12.9619 0.00338 0.143 TGACGATACCCGCGGGTATCA Rv2359_pal_1 sense_PPE24_1577_to_stop 4 24 + -12.9619 0.00338 0.143 TGACGATACCCGCGGGTATCA Rv2359_pal_1 sense_PPE24_1277_to_stop 4 24 - -12.9619 0.00338 0.143 TGATACCCGCGGGTATCGTCA Rv2359_pal_1 sense_PPE24_1352_to_stop 4 24 - -12.9619 0.00338 0.143 TGATACCCGCGGGTATCGTCA Rv2359_pal_1 sense_PPE24_1577_to_stop 4 24 - -12.9619 0.00338 0.143 TGATACCCGCGGGTATCGTCA Rv1423_nonpal_2 sense_Rv2279_300_to_stop 12 31 - -20.1596 0.00338 1 TGTACTGAGATCCCCTATCC Rv1423_nonpal_2 antisense_Rv2279_293_to_stop 17 36 + -20.1596 0.00338 1 TGTACTGAGATCCCCTATCC Rv2887_nonpal_1 sense_gca_460_from_start 6 20 - 0.0625 0.00338 0.519 TACGCCAGCATGTCG Rv0135c_nonpal_1 antisense_rocA_790_to_stop 7 17 - 1.34375 0.00338 0.378 CCGCTACCATA Rv0302_nonpal_2 antisense_cobK_311_from_start 4 14 - -0.628205 0.00339 1 CATCATCGCGG Rv0757_pal_1 antisense_aldA_642_from_start 6 19 + 4.4557 0.00339 0.719 AAGCGTGACTGCTG Rv0757_pal_1 antisense_aldA_642_from_start 6 19 - 4.4557 0.00339 0.719 CAGCAGTCACGCTT Rv0678_nonpal_1 sense_Rv2038c_183_from_start 25 39 - 4.67188 0.00339 0.186 CGCGCTCGCCGATCC Rv1674c_nonpal_1 sense_pks9_325_to_stop 16 33 + -6.89362 0.0034 0.357 CTCCAGATGGCTATCGGT Rv0472c_nonpal_1 antisense_aldA_642_from_start 5 15 + -2.57692 0.0034 0.24 AAAGCGTGACT Rv1994c_nonpal_1 antisense_Rv2279_293_to_stop 5 19 - 4.0411 0.0034 0.175 ACACATCGATCCGGT Rv3249c_nonpal_2 sense_Rv1461_552_from_start 23 37 + 3.4 0.0034 0.542 GTAATCCCTGCCGGC Rv3249c_nonpal_2 antisense_Rv1461_559_from_start 11 25 - 3.4 0.0034 0.542 GTAATCCCTGCCGGC Rv3133c_pal_1 sense_Rv2038c_183_from_start 6 21 + 4.34247 0.0034 1 CTGGACTGTGGGCGTA Rv3133c_pal_1 sense_Rv2038c_183_from_start 6 21 - 4.34247 0.0034 1 TACGCCCACAGTCCAG Rv2642_nonpal_1 antisense_Rv1461_559_from_start 16 40 + -3.13953 0.00341 0.254 CAGGGATTACTGTACCGAAATATTC Rv2642_nonpal_1 sense_Rv1461_552_from_start 8 32 - -3.13953 0.00341 0.254 CAGGGATTACTGTACCGAAATATTC Rv0691c_nonpal_1 sense_bioB_253_to_stop 23 36 - 1.5 0.00341 0.322 ACCGACCGGCATTA Rv0602c_nonpal_1 antisense_Rv1461_559_from_start 2 13 + 1.43836 0.00341 0.481 CTTATTATCGCC Rv1353c_nonpal_1 sense_Rv2038c_183_from_start 21 35 - 4.84848 0.00341 0.23 CTCGCCGATCCGGAT Rv0302_pal_1 antisense_Rv1461_472_from_start 2 13 + 4.95588 0.00341 0.249 TATGACTCCTTG Rv0302_pal_1 antisense_Rv1461_472_from_start 2 13 - 4.95588 0.00341 0.249 CAAGGAGTCATA Rv0302_pal_1 sense_Rv1461_475_from_start 25 36 + 4.95588 0.00341 0.249 CAAGGAGTCATA Rv0302_pal_1 sense_Rv1461_475_from_start 25 36 - 4.95588 0.00341 0.249 TATGACTCCTTG Rv3557c_pal_1 antisense_Rv1461_416_from_start 21 34 + -6.01923 0.00342 0.301 AGCTACTAATCTCT Rv3557c_pal_1 antisense_Rv1461_416_from_start 21 34 - -6.01923 0.00342 0.301 AGAGATTAGTAGCT Rv3249c_nonpal_2 antisense_aldA_642_from_start 16 30 + 3.38667 0.00342 0.542 GCTGGAGGTGACGAT Rv0576_nonpal_1 sense_accA1_598_from_start 14 39 - 1 0.00342 0.13 GGCCGCAACACAAACCGCTCCAGGAA Rv0302_nonpal_2 antisense_pks6_430_from_start 30 40 - -0.653846 0.00342 1 CGATAACAGCG Rv0302_nonpal_2 antisense_pks6_431_from_start 30 40 - -0.653846 0.00342 1 CGATAACAGCG Rv0302_nonpal_2 sense_pks6_424_from_start 8 18 + -0.653846 0.00342 1 CGATAACAGCG Rv0302_nonpal_2 sense_pks6_423_from_start 8 18 + -0.653846 0.00342 1 CGATAACAGCG Rv1828_pal_1 5188_up_of_Rv3186 4 32 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 1681_down_of_Rv3180c 4 32 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 9760_down_of_Rv3190c 4 32 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 42_up_of_Rv3179 4 32 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 6723_up_of_Rv3188 4 32 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 5189_up_of_Rv3186 10 38 + -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 43_up_of_Rv3179 10 38 + -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 1682_down_of_Rv3180c 10 38 + -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 9754_down_of_Rv3190c 10 38 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 1675_down_of_Rv3180c 10 38 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 9761_down_of_Rv3190c 10 38 + -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 36_up_of_Rv3179 10 38 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 6724_up_of_Rv3188 10 38 + -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 5182_up_of_Rv3186 10 38 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 6717_up_of_Rv3188 10 38 + -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 1681_down_of_Rv3180c 4 32 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 42_up_of_Rv3179 4 32 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 5188_up_of_Rv3186 4 32 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 6723_up_of_Rv3188 4 32 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 9760_down_of_Rv3190c 4 32 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 1682_down_of_Rv3180c 10 38 - -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 5182_up_of_Rv3186 10 38 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 9761_down_of_Rv3190c 10 38 - -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 9754_down_of_Rv3190c 10 38 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 36_up_of_Rv3179 10 38 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 43_up_of_Rv3179 10 38 - -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 6717_up_of_Rv3188 10 38 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 1675_down_of_Rv3180c 10 38 - -2.96809 0.00343 0.21 AAGTACACCGATCAGTATACAAGGAGTCG Rv1828_pal_1 5189_up_of_Rv3186 10 38 - -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv1828_pal_1 6724_up_of_Rv3188 10 38 - -2.96809 0.00343 0.21 CGACTCCTTGTATACTGATCGGTGTACTT Rv2788_nonpal_1 sense_Rv0674_10_to_stop 10 37 - -30.1744 0.00343 0.808 AGATCACTCATGTCACCTCCAGGAGTTG Rv0302_nonpal_1 antisense_Rv2279_293_to_stop 6 20 - 3.81159 0.00343 0.417 TACACATCGATCCGG Rv1353c_nonpal_1 1662_up_of_Rv2018 17 31 - 4.83333 0.00344 0.23 ATCAATTTCACTGGA Rv2374c_nonpal_1 antisense_pks6_431_from_start 4 31 - -10.1154 0.00344 0.375 CGTATCCAGATCGTGGGTTCACGAATGC Rv2374c_nonpal_1 antisense_pks6_430_from_start 4 31 - -10.1154 0.00344 0.375 CGTATCCAGATCGTGGGTTCACGAATGC Rv0967_nonpal_1 sense_mptA_23_from_start 11 31 + 4.91803 0.00344 1 CCATGCTCCAGCGGTTGATTT Rv0967_nonpal_1 37_up_of_Rv2172c 11 31 + 4.91803 0.00344 1 CCATGCTCCAGCGGTTGATTT Rv0047c_nonpal_1 sense_Rv1461_552_from_start 2 16 - 4 0.00344 0.466 GAAATATTCCTTGAA Rv2989_nonpal_2 sense_pks9_325_to_stop 5 19 - -1.87356 0.00345 0.991 GGAGACGATTGCGTA Rv3855_nonpal_1 antisense_pyrC_541_to_stop 13 38 + -14.4327 0.00345 1 CGGCGGTGATCGAAATACCCTGGTCC Rv3855_nonpal_1 sense_pyrC_548_to_stop 10 35 - -14.4327 0.00345 1 CGGCGGTGATCGAAATACCCTGGTCC Rv1473A_pal_1 1662_up_of_Rv2018 22 33 + 2.75714 0.00345 0.514 TGAAATTGATAC Rv1473A_pal_1 1662_up_of_Rv2018 22 33 - 2.75714 0.00345 0.514 GTATCAATTTCA Rv1816_nonpal_1 sense_mptA_23_from_start 5 21 + 3.8 0.00345 0.246 TCCGAGCCATGCTCCAG Rv1816_nonpal_1 37_up_of_Rv2172c 5 21 + 3.8 0.00345 0.246 TCCGAGCCATGCTCCAG Rv0767c_nonpal_1 sense_Rv1278_1158_to_stop 16 30 + 4.04286 0.00345 0.445 CTGGAGAGGTCGCTG Rv1956_nonpal_1 antisense_Rv1251c_1309_from_start 17 37 + 0.116279 0.00346 0.275 TCCAGCGCCTTCAAGCTGAAC Rv1049_nonpal_2 sense_gca_460_from_start 7 21 - 2.2 0.00346 0.33 ATACGCCAGCATGTC Rv0967_pal_2 antisense_Rv0370c_389_from_start 30 40 + -0.873418 0.00347 0.887 CCGCGGTGCCG Rv0967_pal_2 antisense_Rv0370c_389_from_start 30 40 - -0.873418 0.00347 0.887 CGGCACCGCGG Rv2009_nonpal_1 sense_metA_384_from_start 15 35 + -0.0379747 0.00347 0.279 CGCTGATCTCGATACGTGACC Rv2009_nonpal_1 antisense_metA_391_from_start 13 33 - -0.0379747 0.00347 0.279 CGCTGATCTCGATACGTGACC Rv3416_nonpal_1 sense_accA1_598_from_start 5 29 + -6.37113 0.00348 0.484 GATACGCTATTCCTGGAGCGGTTTG Rv3416_nonpal_1 antisense_accA1_595_from_start 9 33 - -6.37113 0.00348 0.484 GATACGCTATTCCTGGAGCGGTTTG Rv1167c_nonpal_1 sense_fadE7_118_to_stop 9 23 - -4.13462 0.00348 0.759 ACTCCAGCGATATCC Rv1167c_nonpal_1 antisense_fadE7_121_to_stop 15 29 + -4.13462 0.00348 0.759 ACTCCAGCGATATCC Rv0135c_nonpal_2 sense_PPE24_1277_to_stop 2 29 - -22.883 0.00348 0.464 GATTGTGATACCCGCGGGTATCGTCAGC Rv0135c_nonpal_2 sense_PPE24_1577_to_stop 2 29 - -22.883 0.00348 0.464 GATTGTGATACCCGCGGGTATCGTCAGC Rv0135c_nonpal_2 sense_PPE24_1352_to_stop 2 29 - -22.883 0.00348 0.464 GATTGTGATACCCGCGGGTATCGTCAGC Rv3488_pal_1 sense_accA1_598_from_start 9 16 + -0.264706 0.00348 0.281 CGCTATTC Rv3488_pal_1 sense_accA1_598_from_start 9 16 - -0.264706 0.00348 0.281 GAATAGCG Rv3488_pal_1 antisense_accA1_595_from_start 22 29 + -0.264706 0.00348 0.281 GAATAGCG Rv3488_pal_1 antisense_accA1_595_from_start 22 29 - -0.264706 0.00348 0.281 CGCTATTC Rv3849_pal_1 antisense_fadE7_121_to_stop 31 38 + 5.66234 0.00349 1 GTTGCCGC Rv3849_pal_1 antisense_fadE7_121_to_stop 31 38 - 5.66234 0.00349 1 GCGGCAAC Rv3488_nonpal_1 antisense_Rv1461_559_from_start 4 17 - -2.5 0.00349 0.313 TGCCGGCGATAATA Rv0767c_nonpal_1 4_up_of_Rv1049 24 38 + 4.01429 0.0035 0.445 ATGGGCAAAGGGGCG Rv0576_nonpal_1 49_up_of_Rv3179 1 26 + 0.920455 0.0035 0.13 TACAGTGTCGGTTATAAGTACACCGA Rv0576_nonpal_1 9767_down_of_Rv3190c 1 26 + 0.920455 0.0035 0.13 TACAGTGTCGGTTATAAGTACACCGA Rv0576_nonpal_1 1688_down_of_Rv3180c 1 26 + 0.920455 0.0035 0.13 TACAGTGTCGGTTATAAGTACACCGA Rv0576_nonpal_1 6730_up_of_Rv3188 1 26 + 0.920455 0.0035 0.13 TACAGTGTCGGTTATAAGTACACCGA Rv0576_nonpal_1 5195_up_of_Rv3186 1 26 + 0.920455 0.0035 0.13 TACAGTGTCGGTTATAAGTACACCGA Rv3488_nonpal_1 antisense_frdA_787_from_start 21 34 - -2.51471 0.00351 0.313 GGCTACCGCTACCT Rv1816_pal_1 sense_Rv2279_300_to_stop 12 24 + 4.93103 0.00351 0.144 GGATAGGGGATCT Rv1816_pal_1 antisense_Rv2279_293_to_stop 24 36 + 4.93103 0.00351 0.144 AGATCCCCTATCC Rv1816_pal_1 sense_Rv2279_300_to_stop 12 24 - 4.93103 0.00351 0.144 AGATCCCCTATCC Rv1816_pal_1 antisense_Rv2279_293_to_stop 24 36 - 4.93103 0.00351 0.144 GGATAGGGGATCT Rv1776c_pal_1 antisense_metA_391_from_start 14 28 + 3.59756 0.00351 1 GTCACGTATCGAGAT Rv1776c_pal_1 sense_metA_384_from_start 20 34 + 3.59756 0.00351 1 ATCTCGATACGTGAC Rv1776c_pal_1 antisense_metA_391_from_start 14 28 - 3.59756 0.00351 1 ATCTCGATACGTGAC Rv1776c_pal_1 sense_metA_384_from_start 20 34 - 3.59756 0.00351 1 GTCACGTATCGAGAT Rv1404_pal_1 sense_mmpL4_1184_to_stop 2 14 + 4.4375 0.00352 0.186 GGATTTTGATGAT Rv1404_pal_1 sense_mmpL4_1184_to_stop 2 14 - 4.4375 0.00352 0.186 ATCATCAAAATCC Rv1404_pal_1 sense_Rv1461_552_from_start 18 30 + 4.4375 0.00352 0.186 GTACAGTAATCCC Rv1404_pal_1 antisense_Rv1461_559_from_start 18 30 + 4.4375 0.00352 0.186 GGGATTACTGTAC Rv1404_pal_1 antisense_mmpL4_1187_to_stop 24 36 + 4.4375 0.00352 0.186 ATCATCAAAATCC Rv1404_pal_1 sense_Rv1461_552_from_start 18 30 - 4.4375 0.00352 0.186 GGGATTACTGTAC Rv1404_pal_1 antisense_Rv1461_559_from_start 18 30 - 4.4375 0.00352 0.186 GTACAGTAATCCC Rv1404_pal_1 antisense_mmpL4_1187_to_stop 24 36 - 4.4375 0.00352 0.186 GGATTTTGATGAT Rv0275c_nonpal_1 antisense_Rv1461_472_from_start 9 34 + -12.5 0.00352 0.157 CCTTGAGCCTCCAGATCCTCTCTGAT Rv0275c_nonpal_1 sense_Rv1461_475_from_start 4 29 - -12.5 0.00352 0.157 CCTTGAGCCTCCAGATCCTCTCTGAT Rv3066_nonpal_1 sense_Rv1461_552_from_start 14 33 - 0.494253 0.00352 0.985 GCAGGGATTACTGTACCGAA Rv3066_nonpal_1 antisense_Rv1461_559_from_start 15 34 + 0.494253 0.00352 0.985 GCAGGGATTACTGTACCGAA Rv1473A_pal_1 antisense_cobK_311_from_start 4 15 + 2.7 0.00353 0.514 CCGCGATGATGG Rv1473A_pal_1 antisense_cobK_311_from_start 4 15 - 2.7 0.00353 0.514 CCATCATCGCGG Rv0494_nonpal_1 antisense_fadE7_121_to_stop 4 23 - -1.30864 0.00353 1 CGCTGGAGTACCCGGTCATC Rv0494_nonpal_1 sense_bioB_253_to_stop 8 27 + -1.30864 0.00353 1 TCGCCGACCTGGAGGTAATG Rv0494_nonpal_1 sense_fadE7_118_to_stop 15 34 + -1.30864 0.00353 1 CGCTGGAGTACCCGGTCATC Rv2324_nonpal_2 sense_PPE24_1577_to_stop 3 17 + 1.43373 0.00353 0.598 CTGACGATACCCGCG Rv2324_nonpal_2 sense_PPE24_1277_to_stop 3 17 + 1.43373 0.00353 0.598 CTGACGATACCCGCG Rv2324_nonpal_2 sense_PPE24_1352_to_stop 3 17 + 1.43373 0.00353 0.598 CTGACGATACCCGCG Rv1816_pal_1 antisense_Rv0370c_389_from_start 7 19 + 4.91724 0.00353 0.144 TGAGCAGCACTGG Rv1816_pal_1 antisense_Rv0370c_389_from_start 7 19 - 4.91724 0.00353 0.144 CCAGTGCTGCTCA Rv0472c_nonpal_1 sense_mmpL4_1184_to_stop 27 37 - -2.74038 0.00353 0.243 TAGCTTCGAAT Rv0472c_nonpal_1 antisense_mmpL4_1187_to_stop 1 11 + -2.74038 0.00353 0.243 TAGCTTCGAAT Rv0967_pal_1 sense_Rv0674_10_to_stop 30 36 + -2.41176 0.00354 0.605 AGTGATC Rv0967_pal_1 sense_Rv0674_10_to_stop 30 36 - -2.41176 0.00354 0.605 GATCACT Rv2250c_nonpal_1 antisense_aldA_642_from_start 30 39 + 3.92754 0.00354 0.303 TGTTGACAAC Rv0981_nonpal_2 sense_Rv1461_552_from_start 8 28 + -2.68421 0.00354 0.467 GAATATTTCGGTACAGTAATC Rv0981_nonpal_2 antisense_Rv1461_559_from_start 20 40 - -2.68421 0.00354 0.467 GAATATTTCGGTACAGTAATC Rv0818_pal_1 sense_Rv0674_10_to_stop 11 26 + 1.5625 0.00354 0.126 AACTCCTGGAGGTGAC Rv0818_pal_1 sense_Rv0674_10_to_stop 11 26 - 1.5625 0.00354 0.126 GTCACCTCCAGGAGTT Rv1033c_nonpal_1 antisense_Rv1251c_1309_from_start 8 22 + -1.78481 0.00354 0.66 TACAGCGGCTCCAGC Rv1719_nonpal_2 antisense_aldA_642_from_start 16 36 + -0.941176 0.00355 1 GCTGGAGGTGACGATGTTGAC Rv3574_nonpal_1 1662_up_of_Rv2018 22 36 + 0.794118 0.00355 0.255 TGAAATTGATACAAG Rv1719_nonpal_1 10_up_of_Rv1866 23 39 + 3.19737 0.00355 1 CACCGATATGGTGACAC Rv1675c_pal_1 93_up_of_lpqG 22 37 + -4.34286 0.00355 1 TGCCAGTACCCCGAAA Rv1675c_pal_1 93_up_of_lpqG 22 37 - -4.34286 0.00355 1 TTTCGGGGTACTGGCA Rv1719_nonpal_2 antisense_frdA_787_from_start 17 37 - -0.952941 0.00356 1 GACGGCTACCGCTACCTCCAG Rv1473A_nonpal_1 antisense_cobK_311_from_start 5 18 - -4.56164 0.00356 0.403 CCGCCATCATCGCG Rv0022c_nonpal_1 antisense_Rv1461_472_from_start 19 33 - 2.65753 0.00356 0.2 TCAGAGAGGATCTGG Rv0022c_nonpal_1 sense_Rv1461_475_from_start 5 19 + 2.65753 0.00356 0.2 TCAGAGAGGATCTGG Rv0602c_pal_1 sense_Rv1461_475_from_start 33 40 + -0.278481 0.00356 0.135 CATATTTT Rv0602c_pal_1 sense_Rv1461_475_from_start 33 40 - -0.278481 0.00356 0.135 AAAATATG Rv3681c_pal_1 sense_Rv0674_10_to_stop 5 18 + 4.04762 0.00357 0.445 CAACTCAACTCCTG Rv3681c_pal_1 sense_Rv0674_10_to_stop 5 18 - 4.04762 0.00357 0.445 CAGGAGTTGAGTTG Rv1674c_nonpal_1 sense_accA1_598_from_start 2 19 - -7.11702 0.00357 0.357 CAGGAATAGCGTATCGTC Rv1674c_nonpal_1 antisense_accA1_595_from_start 19 36 + -7.11702 0.00357 0.357 CAGGAATAGCGTATCGTC Rv1816_pal_2 6723_up_of_Rv3188 16 24 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 1681_down_of_Rv3180c 16 24 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 42_up_of_Rv3179 16 24 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 5188_up_of_Rv3186 16 24 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 9760_down_of_Rv3190c 16 24 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 6724_up_of_Rv3188 18 26 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 43_up_of_Rv3179 18 26 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 5189_up_of_Rv3186 18 26 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 1682_down_of_Rv3180c 18 26 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 9761_down_of_Rv3190c 18 26 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 6717_up_of_Rv3188 22 30 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 36_up_of_Rv3179 22 30 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 5182_up_of_Rv3186 22 30 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 9754_down_of_Rv3190c 22 30 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 1675_down_of_Rv3180c 22 30 + -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 6730_up_of_Rv3188 24 32 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 49_up_of_Rv3179 24 32 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 6723_up_of_Rv3188 16 24 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 1688_down_of_Rv3180c 24 32 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 42_up_of_Rv3179 16 24 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 5195_up_of_Rv3186 24 32 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 5188_up_of_Rv3186 16 24 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 9767_down_of_Rv3190c 24 32 + -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 9760_down_of_Rv3190c 16 24 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 1681_down_of_Rv3180c 16 24 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 6724_up_of_Rv3188 18 26 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 43_up_of_Rv3179 18 26 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 1682_down_of_Rv3180c 18 26 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 5189_up_of_Rv3186 18 26 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 9761_down_of_Rv3190c 18 26 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 6717_up_of_Rv3188 22 30 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 36_up_of_Rv3179 22 30 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 5182_up_of_Rv3186 22 30 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 9754_down_of_Rv3190c 22 30 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 1675_down_of_Rv3180c 22 30 - -2.0274 0.00357 0.267 CGATCAGTA Rv1816_pal_2 5195_up_of_Rv3186 24 32 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 1688_down_of_Rv3180c 24 32 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 9767_down_of_Rv3190c 24 32 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 49_up_of_Rv3179 24 32 - -2.0274 0.00357 0.267 TACTGATCG Rv1816_pal_2 6730_up_of_Rv3188 24 32 - -2.0274 0.00357 0.267 TACTGATCG Rv1473A_nonpal_1 37_up_of_Rv2172c 23 36 + -4.58904 0.00358 0.403 GGTTGATTTGGCTA Rv1473A_nonpal_1 sense_mptA_23_from_start 23 36 + -4.58904 0.00358 0.403 GGTTGATTTGGCTA Rv1990c_nonpal_1 antisense_Rv0370c_389_from_start 30 40 - 4.6 0.00358 1 CGGCACCGCGG Rv0275c_nonpal_1 sense_Rv1461_552_from_start 2 27 - -12.5865 0.00358 0.157 ATTACTGTACCGAAATATTCCTTGAA Rv1776c_nonpal_1 antisense_mmpL4_1187_to_stop 14 19 + 5.46575 0.00358 0.802 GTCTCC Rv1776c_nonpal_1 sense_pks9_325_to_stop 14 19 + 5.46575 0.00358 0.802 GTCTCC Rv1776c_nonpal_1 sense_mmpL4_1184_to_stop 19 24 - 5.46575 0.00358 0.802 GTCTCC Rv0302_nonpal_1 antisense_frdA_787_from_start 8 22 + 3.71014 0.00359 0.421 GTCGTAATCCTGGAG Rv1846c_pal_1 sense_Rv1278_1158_to_stop 1 15 + -1.23158 0.00359 0.239 CTGATGCGCTGGCGG Rv1846c_pal_1 sense_Rv1278_1158_to_stop 1 15 - -1.23158 0.00359 0.239 CCGCCAGCGCATCAG Rv3736_nonpal_1 sense_pks9_325_to_stop 11 25 - 4.07246 0.00359 0.626 CCATCTGGAGACGAT Rv1033c_nonpal_1 sense_Rv0674_10_to_stop 15 29 - -1.8481 0.0036 0.66 CATGTCACCTCCAGG Rv3416_nonpal_1 antisense_pyrC_541_to_stop 4 28 - -6.51546 0.0036 0.484 ATTTCGATCACCGCCGAGGTCACCC Rv3574_nonpal_1 antisense_frdA_787_from_start 4 18 - 0.735294 0.0036 0.255 AGGATTACGACCTCG Rv1674c_nonpal_1 antisense_Rv0370c_389_from_start 9 26 - -7.15957 0.00361 0.357 GACCCCTCCAGTGCTGCT Rv3574_nonpal_2 447_down_of_accE5 13 40 + -38.3248 0.00361 0.397 AAGCCTCCAGATCGGAGGCCGAAGGTGT Rv3574_nonpal_2 antisense_Rv3282_217_to_stop 13 40 + -38.3248 0.00361 0.397 AAGCCTCCAGATCGGAGGCCGAAGGTGT Rv0653c_nonpal_1 sense_pyrC_548_to_stop 3 21 + 0.316456 0.00361 0.18 GGGCTAAGGACCAGGGTAT Rv2011c_nonpal_1 antisense_gca_467_from_start 9 27 + 4.52857 0.00361 0.656 GTAAGACTTGTGATATTGA Rv2011c_nonpal_1 sense_gca_460_from_start 21 39 - 4.52857 0.00361 0.656 GTAAGACTTGTGATATTGA Rv1255c_nonpal_1 6730_up_of_Rv3188 1 20 + -2.1954 0.00362 0.391 TACAGTGTCGGTTATAAGTA Rv1255c_nonpal_1 5195_up_of_Rv3186 1 20 + -2.1954 0.00362 0.391 TACAGTGTCGGTTATAAGTA Rv1255c_nonpal_1 1688_down_of_Rv3180c 1 20 + -2.1954 0.00362 0.391 TACAGTGTCGGTTATAAGTA Rv1255c_nonpal_1 49_up_of_Rv3179 1 20 + -2.1954 0.00362 0.391 TACAGTGTCGGTTATAAGTA Rv1255c_nonpal_1 9767_down_of_Rv3190c 1 20 + -2.1954 0.00362 0.391 TACAGTGTCGGTTATAAGTA Rv2887_nonpal_1 antisense_mmpL4_1187_to_stop 6 20 + -0.1625 0.00362 0.519 TCGAATTGGTCTCCA Rv2887_nonpal_1 sense_mmpL4_1184_to_stop 18 32 - -0.1625 0.00362 0.519 TCGAATTGGTCTCCA Rv3736_nonpal_1 sense_mptA_23_from_start 15 29 + 4.05797 0.00362 0.626 GCTCCAGCGGTTGAT Rv3736_nonpal_1 37_up_of_Rv2172c 15 29 + 4.05797 0.00362 0.626 GCTCCAGCGGTTGAT Rv0767c_pal_1 sense_Rv2038c_183_from_start 1 12 + 4.9703 0.00362 0.989 AGACGCTGGACT Rv0767c_pal_1 sense_Rv2038c_183_from_start 1 12 - 4.9703 0.00362 0.989 AGTCCAGCGTCT Rv0022c_nonpal_1 antisense_cobK_311_from_start 16 30 - 2.60274 0.00362 0.2 GGGATCCCGGTACCG Rv0022c_nonpal_1 sense_cobK_304_from_start 18 32 + 2.60274 0.00362 0.2 GGGATCCCGGTACCG Rv0967_nonpal_2 sense_bioB_253_to_stop 10 30 - -15.7021 0.00362 1 CGGCATTACCTCCAGGTCGGC Rv0981_nonpal_2 sense_pks6_424_from_start 15 35 + -2.77895 0.00363 0.467 AGCGTATCCAGATCGTGGGTT Rv0981_nonpal_2 sense_pks6_423_from_start 15 35 + -2.77895 0.00363 0.467 AGCGTATCCAGATCGTGGGTT Rv0981_nonpal_2 antisense_pks6_431_from_start 13 33 - -2.77895 0.00363 0.467 AGCGTATCCAGATCGTGGGTT Rv0981_nonpal_2 antisense_pks6_430_from_start 13 33 - -2.77895 0.00363 0.467 AGCGTATCCAGATCGTGGGTT Rv3488_nonpal_2 antisense_rocA_790_to_stop 5 32 - -32.2128 0.00363 0.223 GGGTACCAATATCGGCCGCTACCATAGC Rv0081_nonpal_1 antisense_Rv2279_293_to_stop 4 18 - 0.28 0.00363 0.417 CACATCGATCCGGTT Rv0602c_pal_1 sense_mmpL4_1184_to_stop 10 17 + -0.341772 0.00363 0.135 ATGATTTC Rv0602c_pal_1 sense_mmpL4_1184_to_stop 10 17 - -0.341772 0.00363 0.135 GAAATCAT Rv0602c_pal_1 antisense_gca_467_from_start 18 25 + -0.341772 0.00363 0.135 GTGATATT Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 21 28 + -0.341772 0.00363 0.135 GAAATCAT Rv0602c_pal_1 sense_gca_460_from_start 23 30 + -0.341772 0.00363 0.135 AATATCAC Rv0602c_pal_1 antisense_gca_467_from_start 18 25 - -0.341772 0.00363 0.135 AATATCAC Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 21 28 - -0.341772 0.00363 0.135 ATGATTTC Rv0602c_pal_1 sense_gca_460_from_start 23 30 - -0.341772 0.00363 0.135 GTGATATT Rv0023_nonpal_1 sense_pks6_424_from_start 3 23 - 3.92958 0.00363 0.131 GGATACGCTGTTATCGCACAC Rv0023_nonpal_1 sense_pks6_423_from_start 3 23 - 3.92958 0.00363 0.131 GGATACGCTGTTATCGCACAC Rv0767c_nonpal_2 sense_treZ_467_to_stop 14 34 + 0.78481 0.00364 0.379 GGCCTCCAGCCCGTTTCAGTT Rv0767c_nonpal_2 877_up_of_treZ 14 34 + 0.78481 0.00364 0.379 GGCCTCCAGCCCGTTTCAGTT Rv0767c_nonpal_2 antisense_treZ_470_to_stop 4 24 - 0.78481 0.00364 0.379 GGCCTCCAGCCCGTTTCAGTT Rv0767c_nonpal_2 880_up_of_treZ 4 24 - 0.78481 0.00364 0.379 GGCCTCCAGCCCGTTTCAGTT Rv0767c_nonpal_2 antisense_treY_785_to_stop 4 24 - 0.78481 0.00364 0.379 GGCCTCCAGCCCGTTTCAGTT Rv1255c_nonpal_1 sense_gca_460_from_start 7 26 + -2.21839 0.00364 0.391 GACATGCTGGCGTATCAATA Rv1556_pal_1 antisense_Rv2963_530_to_stop 16 31 + 0.463158 0.00364 0.23 GAACGATTCGGGTACC Rv1556_pal_1 sense_Rv2963_537_to_stop 17 32 + 0.463158 0.00364 0.23 GGTACCCGAATCGTTC Rv1556_pal_1 antisense_Rv2963_530_to_stop 16 31 - 0.463158 0.00364 0.23 GGTACCCGAATCGTTC Rv1556_pal_1 sense_Rv2963_537_to_stop 17 32 - 0.463158 0.00364 0.23 GAACGATTCGGGTACC Rv0691c_pal_1 sense_Rv2038c_183_from_start 19 30 + 4.18841 0.00364 0.163 GTATCCGGATCG Rv0691c_pal_1 sense_Rv2038c_183_from_start 19 30 - 4.18841 0.00364 0.163 CGATCCGGATAC Rv3574_nonpal_1 antisense_Rv2279_293_to_stop 16 30 - 0.691176 0.00364 0.255 GGGATCTCAGTACAC Rv3574_nonpal_1 sense_Rv2279_300_to_stop 18 32 + 0.691176 0.00364 0.255 GGGATCTCAGTACAC Rv0880_nonpal_1 antisense_frdA_787_from_start 13 36 - -7.28421 0.00364 0.189 ACGGCTACCGCTACCTCCAGGATT Rv1353c_nonpal_1 antisense_Rv1251c_1309_from_start 8 22 - 4.71212 0.00364 0.23 GCTGGAGCCGCTGTA Rv0047c_pal_1 1662_up_of_Rv2018 27 38 + 4.71212 0.00364 0.345 TTGATACAAGAT Rv0047c_pal_1 1662_up_of_Rv2018 27 38 - 4.71212 0.00364 0.345 ATCTTGTATCAA Rv3830c_nonpal_2 antisense_pyrC_541_to_stop 14 40 + -21.9904 0.00364 0.528 GGCGGTGATCGAAATACCCTGGTCCTT Rv3830c_nonpal_2 sense_pyrC_548_to_stop 8 34 - -21.9904 0.00364 0.528 GGCGGTGATCGAAATACCCTGGTCCTT Rv3830c_pal_2 sense_Rv0674_10_to_stop 21 29 + 5.03896 0.00365 1 GGTGACATG Rv3830c_pal_2 sense_Rv0674_10_to_stop 21 29 - 5.03896 0.00365 1 CATGTCACC Rv1674c_nonpal_1 sense_mmpL4_1184_to_stop 22 39 + -7.21277 0.00365 0.357 GACCAATTCGAAGCTATT Rv1556_nonpal_1 sense_pks9_325_to_stop 2 18 - -5.37234 0.00365 0.691 GAGACGATTGCGTAGTT Rv3249c_nonpal_1 sense_gca_460_from_start 2 12 + 3.8125 0.00365 0.47 CCACCGACATG Rv3849_nonpal_1 sense_mmpL4_1184_to_stop 2 13 + -0.0821918 0.00365 0.549 GGATTTTGATGA Rv3849_nonpal_1 antisense_mmpL4_1187_to_stop 25 36 - -0.0821918 0.00365 0.549 GGATTTTGATGA Rv3488_nonpal_1 sense_pks6_424_from_start 2 15 + -2.69118 0.00365 0.313 AGTGTGCGATAACA Rv3488_nonpal_1 sense_pks6_423_from_start 2 15 + -2.69118 0.00365 0.313 AGTGTGCGATAACA Rv1994c_nonpal_1 sense_mmpL4_1184_to_stop 9 23 + 3.86301 0.00365 0.175 GATGATTTCTGGAGA Rv1994c_nonpal_1 antisense_mmpL4_1187_to_stop 15 29 - 3.86301 0.00365 0.175 GATGATTTCTGGAGA Rv3830c_nonpal_2 sense_pks6_423_from_start 7 33 - -22.0096 0.00365 0.528 CCCACGATCTGGATACGCTGTTATCGC Rv3830c_nonpal_2 sense_pks6_424_from_start 7 33 - -22.0096 0.00365 0.528 CCCACGATCTGGATACGCTGTTATCGC Rv0302_pal_1 sense_gca_460_from_start 15 26 + 4.82353 0.00366 0.249 GGCGTATCAATA Rv0302_pal_1 antisense_gca_467_from_start 22 33 + 4.82353 0.00366 0.249 TATTGATACGCC Rv0302_pal_1 sense_gca_460_from_start 15 26 - 4.82353 0.00366 0.249 TATTGATACGCC Rv0302_pal_1 antisense_gca_467_from_start 22 33 - 4.82353 0.00366 0.249 GGCGTATCAATA Rv0273c_nonpal_1 sense_bioB_253_to_stop 4 28 - 2.65 0.00367 0.833 GCATTACCTCCAGGTCGGCGAACGG Rv2788_nonpal_1 antisense_Rv3282_217_to_stop 12 39 + -30.593 0.00367 0.808 TAAGCCTCCAGATCGGAGGCCGAAGGTG Rv2788_nonpal_1 447_down_of_accE5 12 39 + -30.593 0.00367 0.808 TAAGCCTCCAGATCGGAGGCCGAAGGTG Rv3830c_nonpal_2 1662_up_of_Rv2018 3 29 - -22.0288 0.00367 0.528 CAATTTCACTGGAGAAGGCCGATTCAT Rv0324_nonpal_1 antisense_aldA_642_from_start 27 34 + -2.41176 0.00367 0.296 CGATGTTG Rv3765c_nonpal_1 sense_accA1_598_from_start 15 34 - -7.77895 0.00368 0.484 CAACACAAACCGCTCCAGGA Rv3765c_nonpal_1 antisense_accA1_595_from_start 4 23 + -7.77895 0.00368 0.484 CAACACAAACCGCTCCAGGA Rv0691c_pal_1 antisense_gca_467_from_start 14 25 + 4.15942 0.00368 0.163 ACTTGTGATATT Rv0691c_pal_1 sense_gca_460_from_start 23 34 + 4.15942 0.00368 0.163 AATATCACAAGT Rv0691c_pal_1 antisense_gca_467_from_start 14 25 - 4.15942 0.00368 0.163 AATATCACAAGT Rv0691c_pal_1 sense_gca_460_from_start 23 34 - 4.15942 0.00368 0.163 ACTTGTGATATT Rv3249c_pal_1 93_up_of_lpqG 14 25 + 4.96923 0.00368 0.329 CCCGTCGATGCC Rv3249c_pal_1 93_up_of_lpqG 14 25 - 4.96923 0.00368 0.329 GGCATCGACGGG Rv0022c_pal_1 antisense_Rv1251c_1309_from_start 5 26 + 2.75676 0.00368 0.168 AGGTACAGCGGCTCCAGCGCCT Rv0022c_pal_1 1662_up_of_Rv2018 6 27 + 2.75676 0.00368 0.168 AATCGGCCTTCTCCAGTGAAAT Rv0022c_pal_1 antisense_Rv1251c_1309_from_start 5 26 - 2.75676 0.00368 0.168 AGGCGCTGGAGCCGCTGTACCT Rv0022c_pal_1 1662_up_of_Rv2018 6 27 - 2.75676 0.00368 0.168 ATTTCACTGGAGAAGGCCGATT Rv1556_nonpal_1 antisense_rocA_790_to_stop 10 26 + -5.41489 0.00369 0.691 GGTAGCGGCCGATATTG Rv1556_nonpal_1 sense_rocA_797_to_stop 22 38 - -5.41489 0.00369 0.691 GGTAGCGGCCGATATTG Rv2011c_pal_1 antisense_Rv2279_293_to_stop 8 22 + 4.80556 0.00369 0.592 GGATCGATGTGTACT Rv2011c_pal_1 antisense_Rv2279_293_to_stop 8 22 - 4.80556 0.00369 0.592 AGTACACATCGATCC Rv2011c_pal_1 sense_Rv2279_300_to_stop 26 40 + 4.80556 0.00369 0.592 AGTACACATCGATCC Rv2011c_pal_1 sense_Rv2279_300_to_stop 26 40 - 4.80556 0.00369 0.592 GGATCGATGTGTACT Rv0602c_pal_1 sense_metA_384_from_start 17 24 + -0.481013 0.00369 0.135 CTGATCTC Rv0602c_pal_1 antisense_metA_391_from_start 24 31 + -0.481013 0.00369 0.135 GAGATCAG Rv0602c_pal_1 sense_metA_384_from_start 17 24 - -0.481013 0.00369 0.135 GAGATCAG Rv0602c_pal_1 sense_Rv0674_10_to_stop 31 38 + -0.481013 0.00369 0.135 GTGATCTG Rv0602c_pal_1 antisense_metA_391_from_start 24 31 - -0.481013 0.00369 0.135 CTGATCTC Rv0602c_pal_1 sense_Rv0674_10_to_stop 31 38 - -0.481013 0.00369 0.135 CAGATCAC Rv1255c_nonpal_1 antisense_PPE24_1345_to_stop 6 25 - -2.27586 0.00369 0.391 CACAATCGGTGGCTTTAGTC Rv1255c_nonpal_1 antisense_PPE24_1270_to_stop 6 25 - -2.27586 0.00369 0.391 CACAATCGGTGGCTTTAGTC Rv1255c_nonpal_1 antisense_PPE24_1570_to_stop 6 25 - -2.27586 0.00369 0.391 CACAATCGGTGGCTTTAGTC Rv3681c_pal_1 sense_Rv1461_552_from_start 5 18 + 3.96429 0.00369 0.445 AAGGAATATTTCGG Rv3681c_pal_1 sense_Rv1461_552_from_start 5 18 - 3.96429 0.00369 0.445 CCGAAATATTCCTT Rv2021c_pal_1 antisense_pyrC_541_to_stop 5 19 + 4.85057 0.0037 0.784 GGTGACCTCGGCGGT Rv2021c_pal_1 antisense_pyrC_541_to_stop 5 19 - 4.85057 0.0037 0.784 ACCGCCGAGGTCACC Rv1473A_pal_2 sense_mptA_23_from_start 25 32 + -1.78082 0.0037 0.217 TTGATTTG Rv1473A_pal_2 37_up_of_Rv2172c 25 32 + -1.78082 0.0037 0.217 TTGATTTG Rv1473A_pal_2 sense_mptA_23_from_start 25 32 - -1.78082 0.0037 0.217 CAAATCAA Rv1473A_pal_2 37_up_of_Rv2172c 25 32 - -1.78082 0.0037 0.217 CAAATCAA Rv0767c_nonpal_2 sense_bioB_253_to_stop 4 24 - 0.721519 0.0037 0.379 TACCTCCAGGTCGGCGAACGG Rv0981_nonpal_2 sense_bioB_253_to_stop 7 27 - -2.86316 0.00371 0.467 CATTACCTCCAGGTCGGCGAA Rv0302_nonpal_2 antisense_aldA_642_from_start 21 31 - -0.897436 0.00371 1 CATCGTCACCT Rv0324_nonpal_1 antisense_Rv1461_559_from_start 7 14 - -2.42647 0.00371 0.296 CGGCGATA Rv0678_pal_1 sense_Rv0674_10_to_stop 28 34 + -2.36765 0.00371 0.428 TGAGTGA Rv0678_pal_1 sense_Rv0674_10_to_stop 28 34 - -2.36765 0.00371 0.428 TCACTCA Rv2011c_nonpal_1 sense_bioB_253_to_stop 22 40 + 4.47143 0.00371 0.656 GTAATGCCGGTCGGTGACG Rv1828_nonpal_1 10_up_of_Rv1866 6 29 + -8.57447 0.00372 0.298 GGCTGTTCTGCTGGAGGCACCGAT Rv2324_nonpal_2 sense_pks6_424_from_start 8 22 - 1.21687 0.00372 0.598 GATACGCTGTTATCG Rv2324_nonpal_2 sense_pks6_423_from_start 8 22 - 1.21687 0.00372 0.598 GATACGCTGTTATCG Rv2324_nonpal_2 antisense_pks6_431_from_start 26 40 + 1.21687 0.00372 0.598 GATACGCTGTTATCG Rv2324_nonpal_2 antisense_pks6_430_from_start 26 40 + 1.21687 0.00372 0.598 GATACGCTGTTATCG Rv3249c_nonpal_1 sense_PPE24_1352_to_stop 2 12 - 3.75 0.00373 0.47 GTATCGTCAGC Rv3249c_nonpal_1 sense_PPE24_1577_to_stop 2 12 - 3.75 0.00373 0.47 GTATCGTCAGC Rv3249c_nonpal_1 sense_PPE24_1277_to_stop 2 12 - 3.75 0.00373 0.47 GTATCGTCAGC Rv0022c_nonpal_1 1662_up_of_Rv2018 4 18 + 2.50685 0.00373 0.203 TGAATCGGCCTTCTC Rv1219c_nonpal_1 13078_down_of_Rv3190c 1 15 + 0.822785 0.00373 0.599 TACCGTCAAAGCACA Rv1219c_nonpal_1 4999_down_of_Rv3180c 1 15 + 0.822785 0.00373 0.599 TACCGTCAAAGCACA Rv1219c_nonpal_1 3360_up_of_Rv3179 1 15 + 0.822785 0.00373 0.599 TACCGTCAAAGCACA Rv1219c_nonpal_1 8506_up_of_Rv3186 1 15 + 0.822785 0.00373 0.599 TACCGTCAAAGCACA Rv1219c_nonpal_1 10041_up_of_Rv3188 1 15 + 0.822785 0.00373 0.599 TACCGTCAAAGCACA Rv1219c_nonpal_1 sense_mptA_23_from_start 22 36 - 0.822785 0.00373 0.599 TAGCCAAATCAACCG Rv1219c_nonpal_1 37_up_of_Rv2172c 22 36 - 0.822785 0.00373 0.599 TAGCCAAATCAACCG Rv1423_pal_1 sense_pks6_424_from_start 13 24 + 4.64384 0.00373 0.994 ACAGCGTATCCA Rv1423_pal_1 sense_pks6_423_from_start 13 24 + 4.64384 0.00373 0.994 ACAGCGTATCCA Rv1423_pal_1 antisense_pks6_430_from_start 24 35 + 4.64384 0.00373 0.994 TGGATACGCTGT Rv1423_pal_1 sense_pks6_423_from_start 13 24 - 4.64384 0.00373 0.994 TGGATACGCTGT Rv1423_pal_1 sense_pks6_424_from_start 13 24 - 4.64384 0.00373 0.994 TGGATACGCTGT Rv1423_pal_1 antisense_pks6_431_from_start 24 35 + 4.64384 0.00373 0.994 TGGATACGCTGT Rv1423_pal_1 antisense_pks6_431_from_start 24 35 - 4.64384 0.00373 0.994 ACAGCGTATCCA Rv1423_pal_1 antisense_pks6_430_from_start 24 35 - 4.64384 0.00373 0.994 ACAGCGTATCCA Rv2034_nonpal_1 antisense_Rv2279_293_to_stop 14 24 + 4.92647 0.00373 0.359 ATGTGTACTGA Rv2034_nonpal_1 antisense_Rv2963_530_to_stop 23 33 + 4.92647 0.00373 0.359 TCGGGTACCCA Rv2034_nonpal_1 sense_Rv2963_537_to_stop 15 25 - 4.92647 0.00373 0.359 TCGGGTACCCA Rv2034_nonpal_1 sense_Rv2279_300_to_stop 24 34 - 4.92647 0.00373 0.359 ATGTGTACTGA Rv2009_nonpal_1 antisense_aldA_642_from_start 4 24 - -0.291139 0.00374 0.279 ACCTCCAGCAGTCACGCTTTG Rv0602c_nonpal_1 sense_PPE34_3066_to_stop 21 32 - 1 0.00374 0.481 GTCACGTAATCT Rv0602c_nonpal_1 sense_PPE34_1664_from_start 21 32 - 1 0.00374 0.481 GTCACGTAATCT Rv0602c_nonpal_1 sense_PPE34_1439_from_start 21 32 - 1 0.00374 0.481 GTCACGTAATCT Rv0602c_nonpal_1 antisense_PPE34_1661_from_start 6 17 + 1 0.00374 0.481 GTCACGTAATCT Rv1473A_pal_1 antisense_aldA_642_from_start 21 32 + 2.54286 0.00374 0.514 AGGTGACGATGT Rv1473A_pal_1 antisense_aldA_642_from_start 21 32 - 2.54286 0.00374 0.514 ACATCGTCACCT Rv1473A_nonpal_1 antisense_pyrC_541_to_stop 13 26 + -4.79452 0.00374 0.403 CGGCGGTGATCGAA Rv1473A_nonpal_1 sense_pyrC_548_to_stop 22 35 - -4.79452 0.00374 0.403 CGGCGGTGATCGAA Rv1816_nonpal_1 4999_down_of_Rv3180c 15 31 - 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 8506_up_of_Rv3186 15 31 - 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 10041_up_of_Rv3188 15 31 - 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 3360_up_of_Rv3179 15 31 - 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 13078_down_of_Rv3190c 15 31 - 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 sense_pks6_423_from_start 22 38 - 3.6 0.00375 0.246 GTGAACCCACGATCTGG Rv1816_nonpal_1 sense_pks6_424_from_start 22 38 - 3.6 0.00375 0.246 GTGAACCCACGATCTGG Rv1816_nonpal_1 antisense_pks6_431_from_start 10 26 + 3.6 0.00375 0.246 GTGAACCCACGATCTGG Rv1816_nonpal_1 antisense_pks6_430_from_start 10 26 + 3.6 0.00375 0.246 GTGAACCCACGATCTGG Rv1816_nonpal_1 4992_down_of_Rv3180c 17 33 + 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 8499_up_of_Rv3186 17 33 + 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 13071_down_of_Rv3190c 17 33 + 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 10034_up_of_Rv3188 17 33 + 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv1816_nonpal_1 3353_up_of_Rv3179 17 33 + 3.6 0.00375 0.246 ACCGATTGGTGTACTTT Rv2009_nonpal_1 sense_PPE34_1664_from_start 7 27 + -0.303797 0.00375 0.279 CCCGGATTCCCTCCAGATTAC Rv2009_nonpal_1 sense_PPE34_1439_from_start 7 27 + -0.303797 0.00375 0.279 CCCGGATTCCCTCCAGATTAC Rv2009_nonpal_1 sense_PPE34_3066_to_stop 7 27 + -0.303797 0.00375 0.279 CCCGGATTCCCTCCAGATTAC Rv2009_nonpal_1 antisense_PPE34_1661_from_start 11 31 - -0.303797 0.00375 0.279 CCCGGATTCCCTCCAGATTAC Rv2359_nonpal_1 antisense_Rv1461_416_from_start 6 33 - -21.2115 0.00376 0.199 GAGATTAGTAGCTGGAGTAGCCGCACAA Rv1828_nonpal_1 sense_Rv2038c_183_from_start 14 37 + -8.61702 0.00376 0.298 TGGGCGTATCCGGATCGGCGAGCG Rv0602c_nonpal_1 1662_up_of_Rv2018 14 25 - 0.972603 0.00376 0.481 TTCACTGGAGAA Rv0880_nonpal_1 antisense_mmpL4_1187_to_stop 12 35 + -7.43158 0.00376 0.189 TGGTCTCCAGAAATCATCAAAATC Rv0880_nonpal_1 sense_mmpL4_1184_to_stop 3 26 - -7.43158 0.00376 0.189 TGGTCTCCAGAAATCATCAAAATC Rv3681c_nonpal_1 13071_down_of_Rv3190c 5 24 - -0.139241 0.00376 0.288 CAATCGGTTTACTGTAGGAG Rv3681c_nonpal_1 4992_down_of_Rv3180c 5 24 - -0.139241 0.00376 0.288 CAATCGGTTTACTGTAGGAG Rv3681c_nonpal_1 8499_up_of_Rv3186 5 24 - -0.139241 0.00376 0.288 CAATCGGTTTACTGTAGGAG Rv3681c_nonpal_1 3353_up_of_Rv3179 5 24 - -0.139241 0.00376 0.288 CAATCGGTTTACTGTAGGAG Rv3681c_nonpal_1 10034_up_of_Rv3188 5 24 - -0.139241 0.00376 0.288 CAATCGGTTTACTGTAGGAG Rv3574_nonpal_1 antisense_mmpL4_1187_to_stop 1 15 - 0.544118 0.00377 0.255 ACCAATTCGAAGCTA Rv3574_nonpal_1 sense_mmpL4_1184_to_stop 23 37 + 0.544118 0.00377 0.255 ACCAATTCGAAGCTA Rv0465c_pal_1 sense_Rv2279_300_to_stop 9 36 + -3.10227 0.00377 0.236 TACGGATAGGGGATCTCAGTACACATCG Rv0465c_pal_1 antisense_Rv2279_293_to_stop 12 39 + -3.10227 0.00377 0.236 CGATGTGTACTGAGATCCCCTATCCGTA Rv0465c_pal_1 sense_Rv2279_300_to_stop 9 36 - -3.10227 0.00377 0.236 CGATGTGTACTGAGATCCCCTATCCGTA Rv0465c_pal_1 antisense_Rv2279_293_to_stop 12 39 - -3.10227 0.00377 0.236 TACGGATAGGGGATCTCAGTACACATCG Rv0472c_nonpal_1 antisense_rocA_790_to_stop 19 29 - -2.98077 0.00377 0.245 TACCAATATCG Rv0472c_nonpal_1 sense_rocA_797_to_stop 19 29 + -2.98077 0.00377 0.245 TACCAATATCG Rv2250c_pal_1 antisense_gca_467_from_start 8 14 + -2.01471 0.00378 0.497 CGTAAGA Rv2250c_pal_1 antisense_gca_467_from_start 8 14 - -2.01471 0.00378 0.497 TCTTACG Rv2250c_pal_1 sense_gca_460_from_start 34 40 + -2.01471 0.00378 0.497 TCTTACG Rv2250c_pal_1 sense_gca_460_from_start 34 40 - -2.01471 0.00378 0.497 CGTAAGA Rv3488_nonpal_2 antisense_cobK_311_from_start 1 28 + -32.4681 0.00378 0.223 ATACCGCGATGATGGCGGTACCGGGATC Rv0023_nonpal_1 sense_pks6_424_from_start 9 29 + 3.84507 0.00378 0.131 GATAACAGCGTATCCAGATCG Rv0023_nonpal_1 sense_pks6_423_from_start 9 29 + 3.84507 0.00378 0.131 GATAACAGCGTATCCAGATCG Rv0023_nonpal_1 antisense_pks6_431_from_start 19 39 - 3.84507 0.00378 0.131 GATAACAGCGTATCCAGATCG Rv0023_nonpal_1 antisense_pks6_430_from_start 19 39 - 3.84507 0.00378 0.131 GATAACAGCGTATCCAGATCG Rv2034_nonpal_1 antisense_Rv1461_559_from_start 23 33 + 4.89706 0.00378 0.359 TACTGTACCGA Rv2034_nonpal_1 sense_Rv1461_552_from_start 15 25 - 4.89706 0.00378 0.359 TACTGTACCGA Rv3765c_nonpal_1 447_down_of_accE5 7 26 - -7.90526 0.00378 0.484 CGATCTGGAGGCTTACCTGG Rv3765c_nonpal_1 antisense_Rv3282_217_to_stop 7 26 - -7.90526 0.00378 0.484 CGATCTGGAGGCTTACCTGG Rv3246c_pal_1 antisense_PPE34_1661_from_start 11 26 + 3.97561 0.00378 0.105 GTAATCTGGAGGGAAT Rv3246c_pal_1 sense_PPE34_1439_from_start 12 27 + 3.97561 0.00378 0.105 ATTCCCTCCAGATTAC Rv3246c_pal_1 sense_PPE34_1664_from_start 12 27 + 3.97561 0.00378 0.105 ATTCCCTCCAGATTAC Rv3246c_pal_1 sense_PPE34_3066_to_stop 12 27 + 3.97561 0.00378 0.105 ATTCCCTCCAGATTAC Rv3246c_pal_1 antisense_PPE34_1661_from_start 11 26 - 3.97561 0.00378 0.105 ATTCCCTCCAGATTAC Rv3246c_pal_1 sense_PPE34_3066_to_stop 12 27 - 3.97561 0.00378 0.105 GTAATCTGGAGGGAAT Rv3246c_pal_1 sense_PPE34_1664_from_start 12 27 - 3.97561 0.00378 0.105 GTAATCTGGAGGGAAT Rv3246c_pal_1 sense_PPE34_1439_from_start 12 27 - 3.97561 0.00378 0.105 GTAATCTGGAGGGAAT Rv2021c_pal_1 sense_Rv0674_10_to_stop 21 35 + 4.8046 0.00378 0.784 GGTGACATGAGTGAT Rv2021c_pal_1 sense_Rv0674_10_to_stop 21 35 - 4.8046 0.00378 0.784 ATCACTCATGTCACC Rv0135c_nonpal_1 sense_Rv2038c_183_from_start 16 26 + 0.953125 0.00379 0.414 GGCGTATCCGG Rv1556_nonpal_1 sense_Rv1278_1158_to_stop 17 33 - -5.53191 0.00379 0.691 GGTCAGCGACCTCTCCA Rv3681c_pal_1 sense_fadE7_118_to_stop 6 19 + 3.89286 0.0038 0.445 ACGGGATATCGCTG Rv3681c_pal_1 sense_fadE7_118_to_stop 6 19 - 3.89286 0.0038 0.445 CAGCGATATCCCGT Rv3681c_pal_1 antisense_fadE7_121_to_stop 19 32 + 3.89286 0.0038 0.445 CAGCGATATCCCGT Rv3681c_pal_1 antisense_fadE7_121_to_stop 19 32 - 3.89286 0.0038 0.445 ACGGGATATCGCTG Rv1994c_nonpal_1 3360_up_of_Rv3179 22 36 + 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 10041_up_of_Rv3188 22 36 + 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 13078_down_of_Rv3190c 22 36 + 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 4999_down_of_Rv3180c 22 36 + 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 8506_up_of_Rv3186 22 36 + 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 3353_up_of_Rv3179 12 26 - 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 4992_down_of_Rv3180c 12 26 - 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 13071_down_of_Rv3190c 12 26 - 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 10034_up_of_Rv3188 12 26 - 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv1994c_nonpal_1 8499_up_of_Rv3186 12 26 - 3.76712 0.0038 0.175 ACCAATCGGTTTACT Rv0472c_nonpal_1 antisense_Rv2279_293_to_stop 16 26 - -3.02885 0.00381 0.245 TCTCAGTACAC Rv0472c_nonpal_1 sense_Rv2279_300_to_stop 22 32 + -3.02885 0.00381 0.245 TCTCAGTACAC Rv1473A_nonpal_2 antisense_Rv2279_293_to_stop 6 13 + -1.87671 0.00381 0.268 CCGGATCG Rv1473A_nonpal_2 sense_Rv2038c_183_from_start 23 30 + -1.87671 0.00381 0.268 CCGGATCG Rv0022c_nonpal_1 37_up_of_Rv2172c 25 39 + 2.42466 0.00382 0.203 TTGATTTGGCTACAG Rv0022c_nonpal_1 sense_mptA_23_from_start 25 39 + 2.42466 0.00382 0.203 TTGATTTGGCTACAG Rv1994c_pal_1 43_up_of_Rv3179 11 25 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 5189_up_of_Rv3186 11 25 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 9761_down_of_Rv3190c 11 25 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 1682_down_of_Rv3180c 11 25 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 6724_up_of_Rv3188 11 25 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 1681_down_of_Rv3180c 17 31 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 42_up_of_Rv3179 17 31 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 6730_up_of_Rv3188 17 31 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 6723_up_of_Rv3188 17 31 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 5195_up_of_Rv3186 17 31 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 5188_up_of_Rv3186 17 31 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 49_up_of_Rv3179 17 31 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 1688_down_of_Rv3180c 17 31 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 9767_down_of_Rv3190c 17 31 + 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 9760_down_of_Rv3190c 17 31 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 36_up_of_Rv3179 23 37 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 6717_up_of_Rv3188 23 37 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 1675_down_of_Rv3180c 23 37 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 5182_up_of_Rv3186 23 37 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 9754_down_of_Rv3190c 23 37 + 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 43_up_of_Rv3179 11 25 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 6724_up_of_Rv3188 11 25 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 5189_up_of_Rv3186 11 25 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 9761_down_of_Rv3190c 11 25 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 1682_down_of_Rv3180c 11 25 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 42_up_of_Rv3179 17 31 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 6730_up_of_Rv3188 17 31 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 6723_up_of_Rv3188 17 31 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 5195_up_of_Rv3186 17 31 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 5188_up_of_Rv3186 17 31 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 49_up_of_Rv3179 17 31 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 1688_down_of_Rv3180c 17 31 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 9767_down_of_Rv3190c 17 31 - 3.67568 0.00382 0.118 ACTGATCGGTGTACT Rv1994c_pal_1 9760_down_of_Rv3190c 17 31 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 1681_down_of_Rv3180c 17 31 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 36_up_of_Rv3179 23 37 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 1675_down_of_Rv3180c 23 37 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 6717_up_of_Rv3188 23 37 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 5182_up_of_Rv3186 23 37 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1994c_pal_1 9754_down_of_Rv3190c 23 37 - 3.67568 0.00382 0.118 AGTACACCGATCAGT Rv1828_nonpal_1 antisense_rocA_790_to_stop 1 24 + -8.69149 0.00382 0.298 GATAGCTATGGTAGCGGCCGATAT Rv0576_nonpal_1 5189_up_of_Rv3186 7 32 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 9761_down_of_Rv3190c 7 32 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 43_up_of_Rv3179 7 32 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 1682_down_of_Rv3180c 7 32 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 6724_up_of_Rv3188 7 32 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 1688_down_of_Rv3180c 13 38 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 49_up_of_Rv3179 13 38 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 9767_down_of_Rv3190c 13 38 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 6730_up_of_Rv3188 13 38 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 5195_up_of_Rv3186 13 38 + 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 5188_up_of_Rv3186 10 35 - 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 9760_down_of_Rv3190c 10 35 - 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 42_up_of_Rv3179 10 35 - 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 6723_up_of_Rv3188 10 35 - 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0576_nonpal_1 1681_down_of_Rv3180c 10 35 - 0.625 0.00383 0.13 TATAAGTACACCGATCAGTATACAAG Rv0472c_nonpal_1 antisense_Rv1251c_1309_from_start 5 15 - -3.06731 0.00383 0.245 CCGCTGTACCT Rv2034_nonpal_1 8506_up_of_Rv3186 28 38 + 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 10041_up_of_Rv3188 28 38 + 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 13078_down_of_Rv3190c 28 38 + 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 4999_down_of_Rv3180c 28 38 + 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 3360_up_of_Rv3179 28 38 + 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 3353_up_of_Rv3179 10 20 - 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 13071_down_of_Rv3190c 10 20 - 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 8499_up_of_Rv3186 10 20 - 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 4992_down_of_Rv3180c 10 20 - 4.86765 0.00384 0.359 CGGTTTACTGT Rv2034_nonpal_1 10034_up_of_Rv3188 10 20 - 4.86765 0.00384 0.359 CGGTTTACTGT Rv1473A_nonpal_1 sense_fadE7_118_to_stop 6 19 + -4.90411 0.00384 0.403 ACGGGATATCGCTG Rv1473A_nonpal_1 antisense_fadE7_121_to_stop 19 32 - -4.90411 0.00384 0.403 ACGGGATATCGCTG Rv0117_nonpal_1 antisense_Rv1251c_1309_from_start 9 35 - -15.0192 0.00384 0.32 TCAGCTTGAAGGCGCTGGAGCCGCTGT Rv3246c_pal_1 5195_up_of_Rv3186 5 20 + 3.93902 0.00384 0.105 GTGTCGGTTATAAGTA Rv3246c_pal_1 9767_down_of_Rv3190c 5 20 + 3.93902 0.00384 0.105 GTGTCGGTTATAAGTA Rv3246c_pal_1 49_up_of_Rv3179 5 20 + 3.93902 0.00384 0.105 GTGTCGGTTATAAGTA Rv3246c_pal_1 1688_down_of_Rv3180c 5 20 + 3.93902 0.00384 0.105 GTGTCGGTTATAAGTA Rv3246c_pal_1 6730_up_of_Rv3188 5 20 + 3.93902 0.00384 0.105 GTGTCGGTTATAAGTA Rv3246c_pal_1 1688_down_of_Rv3180c 5 20 - 3.93902 0.00384 0.105 TACTTATAACCGACAC Rv3246c_pal_1 9767_down_of_Rv3190c 5 20 - 3.93902 0.00384 0.105 TACTTATAACCGACAC Rv3246c_pal_1 49_up_of_Rv3179 5 20 - 3.93902 0.00384 0.105 TACTTATAACCGACAC Rv3246c_pal_1 6730_up_of_Rv3188 5 20 - 3.93902 0.00384 0.105 TACTTATAACCGACAC Rv3246c_pal_1 5195_up_of_Rv3186 5 20 - 3.93902 0.00384 0.105 TACTTATAACCGACAC Rv0691c_nonpal_1 sense_PPE24_1352_to_stop 1 14 - 0.984375 0.00384 0.336 GGGTATCGTCAGCT Rv0691c_nonpal_1 sense_PPE24_1277_to_stop 1 14 - 0.984375 0.00384 0.336 GGGTATCGTCAGCT Rv0691c_nonpal_1 sense_PPE24_1577_to_stop 1 14 - 0.984375 0.00384 0.336 GGGTATCGTCAGCT Rv0023_pal_1 antisense_PPE34_1661_from_start 10 17 + -1.75949 0.00384 0.474 CGTAATCT Rv0023_pal_1 antisense_frdA_787_from_start 10 17 + -1.75949 0.00384 0.474 CGTAATCC Rv0023_pal_1 antisense_frdA_787_from_start 10 17 - -1.75949 0.00384 0.474 GGATTACG Rv0023_pal_1 antisense_PPE34_1661_from_start 10 17 - -1.75949 0.00384 0.474 AGATTACG Rv0023_pal_1 sense_PPE34_1439_from_start 21 28 + -1.75949 0.00384 0.474 AGATTACG Rv0023_pal_1 sense_PPE34_3066_to_stop 21 28 + -1.75949 0.00384 0.474 AGATTACG Rv0023_pal_1 sense_PPE34_1664_from_start 21 28 + -1.75949 0.00384 0.474 AGATTACG Rv0023_pal_1 sense_PPE34_1439_from_start 21 28 - -1.75949 0.00384 0.474 CGTAATCT Rv0023_pal_1 sense_PPE34_3066_to_stop 21 28 - -1.75949 0.00384 0.474 CGTAATCT Rv0023_pal_1 sense_PPE34_1664_from_start 21 28 - -1.75949 0.00384 0.474 CGTAATCT Rv1674c_nonpal_1 13078_down_of_Rv3190c 19 36 - -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 10041_up_of_Rv3188 19 36 - -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 3360_up_of_Rv3179 19 36 - -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 8506_up_of_Rv3186 19 36 - -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 4999_down_of_Rv3180c 19 36 - -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 4992_down_of_Rv3180c 12 29 + -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 13071_down_of_Rv3190c 12 29 + -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 10034_up_of_Rv3188 12 29 + -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 3353_up_of_Rv3179 12 29 + -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv1674c_nonpal_1 8499_up_of_Rv3186 12 29 + -7.44681 0.00384 0.357 AGTAAACCGATTGGTGTA Rv0757_pal_1 antisense_Rv1461_416_from_start 20 33 + 4.16456 0.00385 0.719 CAGCTACTAATCTC Rv0757_pal_1 antisense_Rv1461_416_from_start 20 33 - 4.16456 0.00385 0.719 GAGATTAGTAGCTG Rv2642_pal_1 sense_pks6_423_from_start 1 21 + 1.08046 0.00385 0.682 AAGTGTGCGATAACAGCGTAT Rv2642_pal_1 sense_pks6_424_from_start 1 21 + 1.08046 0.00385 0.682 AAGTGTGCGATAACAGCGTAT Rv2642_pal_1 sense_pks6_424_from_start 1 21 - 1.08046 0.00385 0.682 ATACGCTGTTATCGCACACTT Rv2642_pal_1 sense_pks6_423_from_start 1 21 - 1.08046 0.00385 0.682 ATACGCTGTTATCGCACACTT Rv1674c_nonpal_1 sense_Rv2963_537_to_stop 1 18 + -7.45745 0.00385 0.357 GTGCTATCGCGGCATGGG Rv0691c_nonpal_1 7_up_of_Rv1049 27 40 + 0.96875 0.00385 0.336 GTGTAGCTACACGT Rv2788_nonpal_2 antisense_rocA_790_to_stop 2 29 - -21.7326 0.00386 0.459 TACCAATATCGGCCGCTACCATAGCTAT Rv1994c_pal_1 sense_mmpL4_1184_to_stop 9 23 + 3.64865 0.00386 0.118 GATGATTTCTGGAGA Rv1994c_pal_1 antisense_mmpL4_1187_to_stop 15 29 + 3.64865 0.00386 0.118 TCTCCAGAAATCATC Rv1994c_pal_1 sense_mmpL4_1184_to_stop 9 23 - 3.64865 0.00386 0.118 TCTCCAGAAATCATC Rv1994c_pal_1 antisense_mmpL4_1187_to_stop 15 29 - 3.64865 0.00386 0.118 GATGATTTCTGGAGA Rv2021c_pal_1 antisense_frdA_787_from_start 2 16 + 4.75862 0.00386 0.784 GCCGAGGTCGTAATC Rv2021c_pal_1 antisense_frdA_787_from_start 2 16 - 4.75862 0.00386 0.784 GATTACGACCTCGGC Rv0678_pal_2 antisense_gca_467_from_start 7 22 + 1.89333 0.00387 0.292 CCGTAAGACTTGTGAT Rv0678_pal_2 antisense_gca_467_from_start 7 22 - 1.89333 0.00387 0.292 ATCACAAGTCTTACGG Rv0818_pal_1 sense_mmpL4_1184_to_stop 9 24 + 1.29167 0.00388 0.126 GATGATTTCTGGAGAC Rv0818_pal_1 antisense_mmpL4_1187_to_stop 14 29 + 1.29167 0.00388 0.126 GTCTCCAGAAATCATC Rv0818_pal_1 sense_mmpL4_1184_to_stop 9 24 - 1.29167 0.00388 0.126 GTCTCCAGAAATCATC Rv0818_pal_1 antisense_mmpL4_1187_to_stop 14 29 - 1.29167 0.00388 0.126 GATGATTTCTGGAGAC Rv1353c_pal_1 8499_up_of_Rv3186 14 24 + 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 4992_down_of_Rv3180c 14 24 + 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 3353_up_of_Rv3179 14 24 + 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 13071_down_of_Rv3190c 14 24 + 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 10034_up_of_Rv3188 14 24 + 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 4999_down_of_Rv3180c 24 34 + 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 4992_down_of_Rv3180c 14 24 - 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 13078_down_of_Rv3190c 24 34 + 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 13071_down_of_Rv3190c 14 24 - 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 3360_up_of_Rv3179 24 34 + 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 10041_up_of_Rv3188 24 34 + 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 3353_up_of_Rv3179 14 24 - 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 8506_up_of_Rv3186 24 34 + 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 8499_up_of_Rv3186 14 24 - 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 10034_up_of_Rv3188 14 24 - 5.22727 0.00388 0.334 CAATCGGTTTA Rv1353c_pal_1 3360_up_of_Rv3179 24 34 - 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 4999_down_of_Rv3180c 24 34 - 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 10041_up_of_Rv3188 24 34 - 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 13078_down_of_Rv3190c 24 34 - 5.22727 0.00388 0.334 TAAACCGATTG Rv1353c_pal_1 8506_up_of_Rv3186 24 34 - 5.22727 0.00388 0.334 TAAACCGATTG Rv3736_nonpal_1 antisense_pyrC_541_to_stop 6 20 - 3.89855 0.00389 0.626 CACCGCCGAGGTCAC Rv0818_nonpal_1 sense_rocA_797_to_stop 7 27 + -4.55319 0.00389 0.454 GCAGTGGGTGGGTACCAATAT Rv2011c_pal_1 antisense_Rv3282_217_to_stop 16 30 + 4.69444 0.00389 0.592 CCTCCAGATCGGAGG Rv2011c_pal_1 447_down_of_accE5 16 30 + 4.69444 0.00389 0.592 CCTCCAGATCGGAGG Rv2011c_pal_1 447_down_of_accE5 16 30 - 4.69444 0.00389 0.592 CCTCCGATCTGGAGG Rv2011c_pal_1 antisense_Rv3282_217_to_stop 16 30 - 4.69444 0.00389 0.592 CCTCCGATCTGGAGG Rv1956_nonpal_1 antisense_rocA_790_to_stop 20 40 + -0.302326 0.0039 0.286 GATATTGGTACCCACCCACTG Rv1956_nonpal_1 sense_rocA_797_to_stop 8 28 - -0.302326 0.0039 0.286 GATATTGGTACCCACCCACTG Rv0678_nonpal_1 sense_mmpL4_1184_to_stop 24 38 + 4.39062 0.0039 0.211 CCAATTCGAAGCTAT Rv1404_nonpal_1 antisense_Rv1461_559_from_start 6 31 + 0.7 0.0039 0.0795 TTATCGCCGGCAGGGATTACTGTACC Rv0339c_nonpal_2 antisense_PPE24_1570_to_stop 13 33 + -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0339c_nonpal_2 antisense_PPE24_1345_to_stop 13 33 + -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0339c_nonpal_2 antisense_PPE24_1270_to_stop 13 33 + -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0339c_nonpal_2 sense_PPE24_1352_to_stop 15 35 - -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0339c_nonpal_2 sense_PPE24_1277_to_stop 15 35 - -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0339c_nonpal_2 sense_PPE24_1577_to_stop 15 35 - -11.375 0.0039 0.7 GCCACCGATTGTGATACCCGC Rv0472c_nonpal_1 sense_cobK_304_from_start 19 29 - -3.11538 0.0039 0.245 TACCGGGATCC Rv0472c_nonpal_1 antisense_cobK_311_from_start 19 29 + -3.11538 0.0039 0.245 TACCGGGATCC Rv0339c_nonpal_2 antisense_Rv1461_559_from_start 14 34 + -11.3942 0.00391 0.7 GGCAGGGATTACTGTACCGAA Rv0339c_nonpal_2 sense_Rv1461_552_from_start 14 34 - -11.3942 0.00391 0.7 GGCAGGGATTACTGTACCGAA Rv1674c_nonpal_1 sense_metA_384_from_start 3 20 + -7.53191 0.00392 0.357 GCTCAAGATTTCCGCTGA Rv0047c_nonpal_1 antisense_frdA_787_from_start 13 27 - 3.65625 0.00392 0.502 GCTACCTCCAGGATT Rv0135c_nonpal_2 37_up_of_Rv2172c 7 34 + -23.5532 0.00392 0.464 CGAGCCATGCTCCAGCGGTTGATTTGGC Rv0135c_nonpal_2 sense_mptA_23_from_start 7 34 + -23.5532 0.00392 0.464 CGAGCCATGCTCCAGCGGTTGATTTGGC Rv1828_pal_1 sense_Rv2038c_183_from_start 10 38 + -3.44681 0.00392 0.21 ACTGTGGGCGTATCCGGATCGGCGAGCGC Rv1828_pal_1 sense_Rv2038c_183_from_start 10 38 - -3.44681 0.00392 0.21 GCGCTCGCCGATCCGGATACGCCCACAGT Rv2642_nonpal_1 37_up_of_Rv2172c 8 32 - -3.68605 0.00392 0.254 CAAATCAACCGCTGGAGCATGGCTC Rv2642_nonpal_1 sense_mptA_23_from_start 8 32 - -3.68605 0.00392 0.254 CAAATCAACCGCTGGAGCATGGCTC Rv3830c_pal_2 antisense_fadE7_121_to_stop 31 39 + 4.79221 0.00392 1 GTTGCCGCC Rv3830c_pal_2 antisense_fadE7_121_to_stop 31 39 - 4.79221 0.00392 1 GGCGGCAAC Rv3246c_nonpal_1 sense_Rv2963_537_to_stop 5 24 - 0.987654 0.00393 0.256 CGGGTACCCATGCCGCGATA Rv2359_nonpal_1 sense_rocA_797_to_stop 11 38 + -21.4519 0.00393 0.199 TGGGTGGGTACCAATATCGGCCGCTACC Rv2359_nonpal_1 antisense_rocA_790_to_stop 10 37 - -21.4519 0.00393 0.199 TGGGTGGGTACCAATATCGGCCGCTACC Rv1674c_pal_1 sense_mmpL4_1184_to_stop 4 25 + 0.416667 0.00393 0.103 ATTTTGATGATTTCTGGAGACC Rv1674c_pal_1 antisense_mmpL4_1187_to_stop 13 34 + 0.416667 0.00393 0.103 GGTCTCCAGAAATCATCAAAAT Rv1674c_pal_1 sense_mmpL4_1184_to_stop 4 25 - 0.416667 0.00393 0.103 GGTCTCCAGAAATCATCAAAAT Rv1674c_pal_1 antisense_mmpL4_1187_to_stop 13 34 - 0.416667 0.00393 0.103 ATTTTGATGATTTCTGGAGACC Rv0023_nonpal_1 6723_up_of_Rv3188 10 30 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 1681_down_of_Rv3180c 10 30 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 5188_up_of_Rv3186 10 30 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 9760_down_of_Rv3190c 10 30 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 42_up_of_Rv3179 10 30 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 6717_up_of_Rv3188 16 36 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 1675_down_of_Rv3180c 16 36 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 36_up_of_Rv3179 16 36 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 5182_up_of_Rv3186 16 36 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 9754_down_of_Rv3190c 16 36 + 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 5189_up_of_Rv3186 12 32 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 9761_down_of_Rv3190c 12 32 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 1682_down_of_Rv3180c 12 32 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 43_up_of_Rv3179 12 32 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 6724_up_of_Rv3188 12 32 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 5195_up_of_Rv3186 18 38 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 1688_down_of_Rv3180c 18 38 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 49_up_of_Rv3179 18 38 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 9767_down_of_Rv3190c 18 38 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0023_nonpal_1 6730_up_of_Rv3188 18 38 - 3.76056 0.00393 0.131 CTTGTATACTGATCGGTGTAC Rv0818_pal_1 4992_down_of_Rv3180c 14 29 + 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 8499_up_of_Rv3186 14 29 + 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 13071_down_of_Rv3190c 14 29 + 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 3353_up_of_Rv3179 14 29 + 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 10034_up_of_Rv3188 14 29 + 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 13078_down_of_Rv3190c 19 34 + 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 4999_down_of_Rv3180c 19 34 + 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 10041_up_of_Rv3188 19 34 + 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 8506_up_of_Rv3186 19 34 + 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 3360_up_of_Rv3179 19 34 + 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 13071_down_of_Rv3190c 14 29 - 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 4992_down_of_Rv3180c 14 29 - 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 8499_up_of_Rv3186 14 29 - 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 3353_up_of_Rv3179 14 29 - 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 10034_up_of_Rv3188 14 29 - 1.25 0.00393 0.126 TACACCAATCGGTTTA Rv0818_pal_1 4999_down_of_Rv3180c 19 34 - 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 10041_up_of_Rv3188 19 34 - 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 8506_up_of_Rv3186 19 34 - 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 3360_up_of_Rv3179 19 34 - 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv0818_pal_1 13078_down_of_Rv3190c 19 34 - 1.25 0.00393 0.126 TAAACCGATTGGTGTA Rv2788_pal_1 antisense_Rv1461_559_from_start 6 27 + -2 0.00393 0.264 TTATCGCCGGCAGGGATTACTG Rv2788_pal_1 antisense_Rv1461_559_from_start 6 27 - -2 0.00393 0.264 CAGTAATCCCTGCCGGCGATAA Rv3574_nonpal_1 sense_Rv2038c_183_from_start 17 31 - 0.352941 0.00394 0.255 CCGATCCGGATACGC Rv1994c_nonpal_1 antisense_metA_391_from_start 13 27 + 3.67123 0.00394 0.177 GGTCACGTATCGAGA Rv1994c_nonpal_1 sense_metA_384_from_start 21 35 - 3.67123 0.00394 0.177 GGTCACGTATCGAGA Rv3676_pal_1 antisense_gca_467_from_start 10 25 + -3.30476 0.00395 0.626 TAAGACTTGTGATATT Rv3676_pal_1 sense_gca_460_from_start 23 38 + -3.30476 0.00395 0.626 AATATCACAAGTCTTA Rv3676_pal_1 antisense_gca_467_from_start 10 25 - -3.30476 0.00395 0.626 AATATCACAAGTCTTA Rv3676_pal_1 sense_gca_460_from_start 23 38 - -3.30476 0.00395 0.626 TAAGACTTGTGATATT Rv3488_nonpal_1 sense_metA_384_from_start 18 31 - -3.02941 0.00395 0.313 ACGTATCGAGATCA Rv3488_nonpal_1 antisense_metA_391_from_start 17 30 + -3.02941 0.00395 0.313 ACGTATCGAGATCA Rv0767c_nonpal_1 sense_pks9_325_to_stop 18 32 + 3.72857 0.00395 0.445 CCAGATGGCTATCGG Rv2989_nonpal_2 sense_Rv2279_300_to_stop 1 15 + -2.44828 0.00396 0.991 ATCCACCATACGGAT Rv3246c_nonpal_1 10_up_of_Rv1866 19 38 + 0.962963 0.00396 0.256 GAGGCACCGATATGGTGACA Rv1846c_pal_1 sense_PPE24_1577_to_stop 6 20 + -1.6 0.00396 0.239 ACGATACCCGCGGGT Rv1846c_pal_1 sense_PPE24_1277_to_stop 6 20 + -1.6 0.00396 0.239 ACGATACCCGCGGGT Rv1846c_pal_1 sense_PPE24_1352_to_stop 6 20 + -1.6 0.00396 0.239 ACGATACCCGCGGGT Rv1846c_pal_1 sense_PPE24_1352_to_stop 6 20 - -1.6 0.00396 0.239 ACCCGCGGGTATCGT Rv1846c_pal_1 sense_PPE24_1577_to_stop 6 20 - -1.6 0.00396 0.239 ACCCGCGGGTATCGT Rv1846c_pal_1 sense_PPE24_1277_to_stop 6 20 - -1.6 0.00396 0.239 ACCCGCGGGTATCGT Rv0967_pal_2 antisense_aldA_642_from_start 27 37 + -1.26582 0.00396 0.887 CGATGTTGACA Rv0967_pal_2 antisense_aldA_642_from_start 27 37 - -1.26582 0.00396 0.887 TGTCAACATCG Rv1828_nonpal_1 5188_up_of_Rv3186 8 31 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 9760_down_of_Rv3190c 8 31 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 42_up_of_Rv3179 8 31 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 6723_up_of_Rv3188 8 31 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 1681_down_of_Rv3180c 8 31 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 6717_up_of_Rv3188 14 37 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 5182_up_of_Rv3186 14 37 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 9754_down_of_Rv3190c 14 37 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 1675_down_of_Rv3180c 14 37 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 36_up_of_Rv3179 14 37 + -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 5189_up_of_Rv3186 11 34 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 9761_down_of_Rv3190c 11 34 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 43_up_of_Rv3179 11 34 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 6724_up_of_Rv3188 11 34 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 1682_down_of_Rv3180c 11 34 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 5195_up_of_Rv3186 17 40 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 49_up_of_Rv3179 17 40 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 1688_down_of_Rv3180c 17 40 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 9767_down_of_Rv3190c 17 40 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv1828_nonpal_1 6730_up_of_Rv3188 17 40 - -8.84043 0.00396 0.298 TCCTTGTATACTGATCGGTGTACT Rv0022c_nonpal_1 sense_Rv2963_537_to_stop 10 24 - 2.30137 0.00396 0.205 CGGGTACCCATGCCG Rv0022c_nonpal_1 antisense_Rv2963_530_to_stop 24 38 + 2.30137 0.00396 0.205 CGGGTACCCATGCCG Rv3765c_nonpal_1 13071_down_of_Rv3190c 20 39 - -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 3353_up_of_Rv3179 20 39 - -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 10034_up_of_Rv3188 20 39 - -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 8499_up_of_Rv3186 20 39 - -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 4992_down_of_Rv3180c 20 39 - -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 3360_up_of_Rv3179 9 28 + -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 10041_up_of_Rv3188 9 28 + -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 8506_up_of_Rv3186 9 28 + -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 4999_down_of_Rv3180c 9 28 + -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv3765c_nonpal_1 13078_down_of_Rv3190c 9 28 + -8.11579 0.00396 0.484 AAGCACAAAGTACACCAATC Rv2250c_nonpal_1 6730_up_of_Rv3188 4 13 - 3.56522 0.00396 0.312 AACCGACACT Rv2250c_nonpal_1 9767_down_of_Rv3190c 4 13 - 3.56522 0.00396 0.312 AACCGACACT Rv2250c_nonpal_1 5195_up_of_Rv3186 4 13 - 3.56522 0.00396 0.312 AACCGACACT Rv2250c_nonpal_1 49_up_of_Rv3179 4 13 - 3.56522 0.00396 0.312 AACCGACACT Rv2250c_nonpal_1 1688_down_of_Rv3180c 4 13 - 3.56522 0.00396 0.312 AACCGACACT Rv2011c_nonpal_1 antisense_pyrC_541_to_stop 12 30 + 4.32857 0.00396 0.656 TCGGCGGTGATCGAAATAC Rv2011c_nonpal_1 antisense_mmpL4_1187_to_stop 18 36 + 4.32857 0.00396 0.656 CCAGAAATCATCAAAATCC Rv2011c_nonpal_1 sense_mmpL4_1184_to_stop 2 20 - 4.32857 0.00396 0.656 CCAGAAATCATCAAAATCC Rv2011c_nonpal_1 sense_pyrC_548_to_stop 18 36 - 4.32857 0.00396 0.656 TCGGCGGTGATCGAAATAC Rv1353c_nonpal_1 sense_Rv1461_552_from_start 6 20 + 4.5303 0.00396 0.23 AGGAATATTTCGGTA Rv0981_nonpal_2 sense_fadE7_118_to_stop 19 39 + -3.12632 0.00397 0.482 GGAGTACCCGGTCATCCGGCA Rv1816_nonpal_1 sense_Rv2038c_183_from_start 23 39 - 3.46154 0.00397 0.257 CGCGCTCGCCGATCCGG Rv0302_nonpal_1 1662_up_of_Rv2018 2 16 + 3.47826 0.00397 0.421 TATGAATCGGCCTTC Rv2021c_pal_1 antisense_rocA_790_to_stop 17 31 + 4.70115 0.00397 0.784 GCCGATATTGGTACC Rv2021c_pal_1 sense_rocA_797_to_stop 17 31 + 4.70115 0.00397 0.784 GGTACCAATATCGGC Rv2021c_pal_1 antisense_rocA_790_to_stop 17 31 - 4.70115 0.00397 0.784 GGTACCAATATCGGC Rv2021c_pal_1 sense_rocA_797_to_stop 17 31 - 4.70115 0.00397 0.784 GCCGATATTGGTACC Rv0691c_nonpal_2 93_up_of_lpqG 14 37 - -39.3173 0.00397 0.63 TTTCGGGGTACTGGCATCGACGGG Rv0602c_nonpal_1 sense_metA_384_from_start 4 15 + 0.712329 0.00398 0.481 CTCAAGATTTCC Rv3676_pal_1 antisense_cobK_311_from_start 16 31 + -3.34286 0.00399 0.626 CGGTACCGGGATCCCA Rv3676_pal_1 sense_cobK_304_from_start 17 32 + -3.34286 0.00399 0.626 TGGGATCCCGGTACCG Rv3676_pal_1 antisense_cobK_311_from_start 16 31 - -3.34286 0.00399 0.626 TGGGATCCCGGTACCG Rv3676_pal_1 sense_cobK_304_from_start 17 32 - -3.34286 0.00399 0.626 CGGTACCGGGATCCCA Rv1359_nonpal_1 sense_metA_384_from_start 8 35 + -12.7212 0.00399 0.287 AGATTTCCGCTGATCTCGATACGTGACC Rv1359_nonpal_1 antisense_metA_391_from_start 13 40 - -12.7212 0.00399 0.287 AGATTTCCGCTGATCTCGATACGTGACC Rv1473A_nonpal_2 10_up_of_Rv1866 9 16 - -2.06849 0.00399 0.277 GCAGAACA Rv3488_pal_2 antisense_Rv3282_217_to_stop 19 26 + -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 antisense_pks6_430_from_start 19 26 + -7.19767 0.004 0.451 CGATCTGG Rv3488_pal_2 antisense_pks6_431_from_start 19 26 + -7.19767 0.004 0.451 CGATCTGG Rv3488_pal_2 447_down_of_accE5 19 26 + -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 sense_pks6_423_from_start 22 29 + -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 sense_pks6_424_from_start 22 29 + -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 antisense_Rv3282_217_to_stop 19 26 - -7.19767 0.004 0.451 CGATCTGG Rv3488_pal_2 447_down_of_accE5 19 26 - -7.19767 0.004 0.451 CGATCTGG Rv3488_pal_2 antisense_pks6_431_from_start 19 26 - -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 antisense_pks6_430_from_start 19 26 - -7.19767 0.004 0.451 CCAGATCG Rv3488_pal_2 sense_pks6_424_from_start 22 29 - -7.19767 0.004 0.451 CGATCTGG Rv3488_pal_2 sense_pks6_423_from_start 22 29 - -7.19767 0.004 0.451 CGATCTGG Rv1049_nonpal_2 antisense_aldA_642_from_start 20 34 - 1.66667 0.004 0.374 CAACATCGTCACCTC Rv0047c_pal_1 sense_bioB_253_to_stop 17 28 + 4.5303 0.00401 0.345 TGGAGGTAATGC Rv0047c_pal_1 sense_bioB_253_to_stop 17 28 - 4.5303 0.00401 0.345 GCATTACCTCCA Rv0023_nonpal_1 sense_accA1_598_from_start 2 22 + 3.71831 0.00401 0.131 GACGATACGCTATTCCTGGAG Rv0023_nonpal_1 antisense_accA1_595_from_start 16 36 - 3.71831 0.00401 0.131 GACGATACGCTATTCCTGGAG Rv3066_pal_1 sense_Rv1461_552_from_start 17 30 + 2.31818 0.00401 1 GGTACAGTAATCCC Rv3066_pal_1 antisense_Rv1461_559_from_start 18 31 + 2.31818 0.00401 1 GGGATTACTGTACC Rv3066_pal_1 sense_Rv1461_552_from_start 17 30 - 2.31818 0.00401 1 GGGATTACTGTACC Rv3066_pal_1 antisense_Rv1461_559_from_start 18 31 - 2.31818 0.00401 1 GGTACAGTAATCCC Rv3849_nonpal_1 4992_down_of_Rv3180c 10 21 - -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 8499_up_of_Rv3186 10 21 - -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 13071_down_of_Rv3190c 10 21 - -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 10034_up_of_Rv3188 10 21 - -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 3353_up_of_Rv3179 10 21 - -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 8506_up_of_Rv3186 27 38 + -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 10041_up_of_Rv3188 27 38 + -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 3360_up_of_Rv3179 27 38 + -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 13078_down_of_Rv3190c 27 38 + -0.630137 0.00401 0.549 TCGGTTTACTGT Rv3849_nonpal_1 4999_down_of_Rv3180c 27 38 + -0.630137 0.00401 0.549 TCGGTTTACTGT Rv1990c_nonpal_1 sense_bioB_253_to_stop 20 30 - 4.33846 0.00402 1 CGGCATTACCT Rv2989_pal_1 sense_Rv2279_300_to_stop 10 26 + -1.22078 0.00402 0.763 ACGGATAGGGGATCTCA Rv2989_pal_1 antisense_Rv2279_293_to_stop 22 38 + -1.22078 0.00402 0.763 TGAGATCCCCTATCCGT Rv2989_pal_1 sense_Rv2279_300_to_stop 10 26 - -1.22078 0.00402 0.763 TGAGATCCCCTATCCGT Rv2989_pal_1 antisense_Rv2279_293_to_stop 22 38 - -1.22078 0.00402 0.763 ACGGATAGGGGATCTCA Rv1846c_pal_1 antisense_PPE24_1345_to_stop 13 27 + -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv1846c_pal_1 antisense_PPE24_1570_to_stop 13 27 + -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv1846c_pal_1 antisense_PPE24_1270_to_stop 13 27 + -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv1846c_pal_1 sense_PPE24_1352_to_stop 21 35 + -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 sense_PPE24_1577_to_stop 21 35 + -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 sense_PPE24_1277_to_stop 21 35 + -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 antisense_PPE24_1570_to_stop 13 27 - -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 antisense_PPE24_1345_to_stop 13 27 - -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 antisense_PPE24_1270_to_stop 13 27 - -1.67368 0.00402 0.239 ATCACAATCGGTGGC Rv1846c_pal_1 sense_PPE24_1277_to_stop 21 35 - -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv1846c_pal_1 sense_PPE24_1577_to_stop 21 35 - -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv1846c_pal_1 sense_PPE24_1352_to_stop 21 35 - -1.67368 0.00402 0.239 GCCACCGATTGTGAT Rv0967_pal_1 37_up_of_Rv2172c 24 30 + -2.52941 0.00403 0.605 GTTGATT Rv0967_pal_1 sense_mptA_23_from_start 24 30 + -2.52941 0.00403 0.605 GTTGATT Rv0967_pal_1 sense_mptA_23_from_start 24 30 - -2.52941 0.00403 0.605 AATCAAC Rv0967_pal_1 37_up_of_Rv2172c 24 30 - -2.52941 0.00403 0.605 AATCAAC Rv2011c_pal_1 10_up_of_Rv1866 22 36 + 4.625 0.00403 0.592 GCACCGATATGGTGA Rv2011c_pal_1 10_up_of_Rv1866 22 36 - 4.625 0.00403 0.592 TCACCATATCGGTGC Rv2324_nonpal_2 sense_pks6_424_from_start 18 32 + 0.891566 0.00403 0.598 GTATCCAGATCGTGG Rv2324_nonpal_2 sense_pks6_423_from_start 18 32 + 0.891566 0.00403 0.598 GTATCCAGATCGTGG Rv2324_nonpal_2 antisense_pks6_431_from_start 16 30 - 0.891566 0.00403 0.598 GTATCCAGATCGTGG Rv2324_nonpal_2 antisense_pks6_430_from_start 16 30 - 0.891566 0.00403 0.598 GTATCCAGATCGTGG Rv2642_nonpal_1 4999_down_of_Rv3180c 10 34 + -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 10041_up_of_Rv3188 10 34 + -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 13078_down_of_Rv3190c 10 34 + -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 8506_up_of_Rv3186 10 34 + -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 3360_up_of_Rv3179 10 34 + -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 3353_up_of_Rv3179 14 38 - -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 13071_down_of_Rv3190c 14 38 - -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 4992_down_of_Rv3180c 14 38 - -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 10034_up_of_Rv3188 14 38 - -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv2642_nonpal_1 8499_up_of_Rv3186 14 38 - -3.7907 0.00403 0.254 AGCACAAAGTACACCAATCGGTTTA Rv0023_nonpal_1 sense_mmpL4_1184_to_stop 4 24 + 3.70423 0.00403 0.131 ATTTTGATGATTTCTGGAGAC Rv0023_nonpal_1 antisense_mmpL4_1187_to_stop 14 34 - 3.70423 0.00403 0.131 ATTTTGATGATTTCTGGAGAC Rv0081_nonpal_1 sense_bioB_253_to_stop 25 39 - -0.106667 0.00403 0.417 GTCACCGACCGGCAT Rv1167c_nonpal_1 antisense_PPE34_1661_from_start 10 24 - -4.72115 0.00404 0.759 TCCCTCCAGATTACG Rv1167c_nonpal_1 sense_PPE34_1439_from_start 14 28 + -4.72115 0.00404 0.759 TCCCTCCAGATTACG Rv1167c_nonpal_1 sense_PPE34_3066_to_stop 14 28 + -4.72115 0.00404 0.759 TCCCTCCAGATTACG Rv1167c_nonpal_1 sense_PPE34_1664_from_start 14 28 + -4.72115 0.00404 0.759 TCCCTCCAGATTACG Rv3676_pal_1 4_up_of_Rv1049 11 26 + -3.39048 0.00404 0.626 CGAGTCTGGAGTAATG Rv3676_pal_1 7_up_of_Rv1049 12 27 + -3.39048 0.00404 0.626 CATTACTCCAGACTCG Rv3676_pal_1 4_up_of_Rv1049 11 26 - -3.39048 0.00404 0.626 CATTACTCCAGACTCG Rv3676_pal_1 7_up_of_Rv1049 12 27 - -3.39048 0.00404 0.626 CGAGTCTGGAGTAATG Rv2506_nonpal_1 5188_up_of_Rv3186 3 21 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 1681_down_of_Rv3180c 3 21 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 6723_up_of_Rv3188 3 21 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 9760_down_of_Rv3190c 3 21 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 42_up_of_Rv3179 3 21 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 5182_up_of_Rv3186 9 27 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 9754_down_of_Rv3190c 9 27 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 1675_down_of_Rv3180c 9 27 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 6717_up_of_Rv3188 9 27 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 36_up_of_Rv3179 9 27 + -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 1682_down_of_Rv3180c 21 39 - -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 43_up_of_Rv3179 21 39 - -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 9761_down_of_Rv3190c 21 39 - -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 6724_up_of_Rv3188 21 39 - -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv2506_nonpal_1 5189_up_of_Rv3186 21 39 - -3.84043 0.00405 0.425 CCGACTCCTTGTATACTGA Rv0602c_nonpal_1 antisense_aldA_642_from_start 16 27 - 0.616438 0.00405 0.481 GTCACCTCCAGC Rv3249c_nonpal_2 9760_down_of_Rv3190c 2 16 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 1681_down_of_Rv3180c 2 16 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 42_up_of_Rv3179 2 16 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 5188_up_of_Rv3186 2 16 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 6723_up_of_Rv3188 2 16 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 9754_down_of_Rv3190c 8 22 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 36_up_of_Rv3179 8 22 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 1675_down_of_Rv3180c 8 22 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 6717_up_of_Rv3188 8 22 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 5182_up_of_Rv3186 8 22 + 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 43_up_of_Rv3179 26 40 - 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 1682_down_of_Rv3180c 26 40 - 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 9761_down_of_Rv3190c 26 40 - 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 5189_up_of_Rv3186 26 40 - 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3249c_nonpal_2 6724_up_of_Rv3188 26 40 - 2.85333 0.00406 0.542 GCCGACTCCTTGTAT Rv3488_nonpal_1 antisense_metA_391_from_start 23 36 - -3.16176 0.00407 0.313 TTCCGCTGATCTCG Rv3488_nonpal_1 sense_metA_384_from_start 12 25 + -3.16176 0.00407 0.313 TTCCGCTGATCTCG Rv1956_nonpal_1 antisense_Rv1251c_1309_from_start 8 28 + -0.453488 0.00407 0.286 TACAGCGGCTCCAGCGCCTTC Rv1473A_pal_2 antisense_aldA_642_from_start 26 33 + -1.91781 0.00407 0.233 ACGATGTT Rv1473A_pal_2 antisense_aldA_642_from_start 26 33 - -1.91781 0.00407 0.233 AACATCGT Rv3066_nonpal_1 sense_pks9_325_to_stop 4 23 - 0.0114943 0.00407 1 ATCTGGAGACGATTGCGTAG Rv0757_nonpal_1 sense_pks9_325_to_stop 20 40 - 0.341772 0.00407 0.595 CGGGCAAACCGATAGCCATCT Rv2324_nonpal_1 36_up_of_Rv3179 3 21 + 4.24638 0.00407 0.32 GGCACGCCGACTCCTTGTA Rv2324_nonpal_1 1675_down_of_Rv3180c 3 21 + 4.24638 0.00407 0.32 GGCACGCCGACTCCTTGTA Rv2324_nonpal_1 5182_up_of_Rv3186 3 21 + 4.24638 0.00407 0.32 GGCACGCCGACTCCTTGTA Rv2324_nonpal_1 9754_down_of_Rv3190c 3 21 + 4.24638 0.00407 0.32 GGCACGCCGACTCCTTGTA Rv2324_nonpal_1 6717_up_of_Rv3188 3 21 + 4.24638 0.00407 0.32 GGCACGCCGACTCCTTGTA Rv2011c_nonpal_1 antisense_pyrC_541_to_stop 7 25 - 4.27143 0.00407 0.656 TCGATCACCGCCGAGGTCA Rv0880_nonpal_1 sense_PPE24_1277_to_stop 3 26 + -7.78947 0.00407 0.189 CTGACGATACCCGCGGGTATCACA Rv0880_nonpal_1 sense_PPE24_1352_to_stop 3 26 + -7.78947 0.00407 0.189 CTGACGATACCCGCGGGTATCACA Rv0880_nonpal_1 sense_PPE24_1577_to_stop 3 26 + -7.78947 0.00407 0.189 CTGACGATACCCGCGGGTATCACA Rv2009_pal_1 10_up_of_Rv1866 5 33 + 0.824818 0.00407 0.142 CGGCTGTTCTGCTGGAGGCACCGATATGG Rv2009_pal_1 10_up_of_Rv1866 5 33 - 0.824818 0.00407 0.142 CCATATCGGTGCCTCCAGCAGAACAGCCG Rv0117_nonpal_1 antisense_aldA_642_from_start 10 36 - -15.3173 0.00407 0.328 GTCAACATCGTCACCTCCAGCAGTCAC Rv0967_pal_2 93_up_of_lpqG 16 26 + -1.27848 0.00408 0.887 CGTCGATGCCA Rv0967_pal_2 93_up_of_lpqG 16 26 - -1.27848 0.00408 0.887 TGGCATCGACG Rv1423_pal_1 10_up_of_Rv1866 25 36 + 4.45205 0.00408 0.994 CCGATATGGTGA Rv1423_pal_1 10_up_of_Rv1866 25 36 - 4.45205 0.00408 0.994 TCACCATATCGG Rv1255c_nonpal_1 sense_Rv1461_475_from_start 21 40 + -2.68966 0.00408 0.418 GGCTCAAGGAGTCATATTTT Rv2250c_pal_1 1662_up_of_Rv2018 28 34 + -2.27941 0.00408 0.497 TGATACA Rv2250c_pal_1 1662_up_of_Rv2018 28 34 - -2.27941 0.00408 0.497 TGTATCA Rv2506_pal_1 antisense_pks6_430_from_start 10 25 + -0.526316 0.00409 0.374 GTGAACCCACGATCTG Rv2506_pal_1 antisense_pks6_431_from_start 10 25 + -0.526316 0.00409 0.374 GTGAACCCACGATCTG Rv2506_pal_1 antisense_rocA_790_to_stop 10 25 + -0.526316 0.00409 0.374 GGTAGCGGCCGATATT Rv2506_pal_1 sense_rocA_797_to_stop 23 38 + -0.526316 0.00409 0.374 AATATCGGCCGCTACC Rv2506_pal_1 antisense_rocA_790_to_stop 10 25 - -0.526316 0.00409 0.374 AATATCGGCCGCTACC Rv2506_pal_1 sense_rocA_797_to_stop 23 38 - -0.526316 0.00409 0.374 GGTAGCGGCCGATATT Rv2506_pal_1 sense_pks6_423_from_start 23 38 - -0.526316 0.00409 0.374 GTGAACCCACGATCTG Rv2506_pal_1 sense_pks6_424_from_start 23 38 - -0.526316 0.00409 0.374 GTGAACCCACGATCTG Rv1846c_nonpal_1 antisense_Rv1461_416_from_start 12 33 - -13.9362 0.00409 0.329 GAGATTAGTAGCTGGAGTAGCC Rv3557c_nonpal_1 sense_PE_PGRS57_112_from_start 16 35 - -15.5192 0.00409 0.341 CCCGCAGCCAGCACCTGCGT Rv3557c_nonpal_1 sense_PE_PGRS54_112_from_start 16 35 - -15.5192 0.00409 0.341 CCCGCAGCCAGCACCTGCGT Rv0273c_nonpal_2 sense_pks9_325_to_stop 4 29 + -43.9323 0.00409 0.354 CTACGCAATCGTCTCCAGATGGCTAT Rv0273c_nonpal_2 antisense_accA1_595_from_start 13 38 + -43.9323 0.00409 0.354 CCGCTCCAGGAATAGCGTATCGTCCC Rv0273c_nonpal_2 sense_PPE34_1439_from_start 13 38 + -43.9323 0.00409 0.354 TTCCCTCCAGATTACGTGACAGTGAG Rv0273c_nonpal_2 sense_PPE34_3066_to_stop 13 38 + -43.9323 0.00409 0.354 TTCCCTCCAGATTACGTGACAGTGAG Rv0273c_nonpal_2 sense_PPE34_1664_from_start 13 38 + -43.9323 0.00409 0.354 TTCCCTCCAGATTACGTGACAGTGAG Rv0273c_nonpal_2 antisense_pyrC_541_to_stop 14 39 + -43.9323 0.00409 0.354 GGCGGTGATCGAAATACCCTGGTCCT Rv0273c_nonpal_2 sense_pyrC_548_to_stop 9 34 - -43.9323 0.00409 0.354 GGCGGTGATCGAAATACCCTGGTCCT Rv1255c_pal_1 sense_fadE7_118_to_stop 2 27 + 1.50575 0.00409 0.416 GGCAACGGGATATCGCTGGAGTACCC Rv1255c_pal_1 antisense_fadE7_121_to_stop 11 36 + 1.50575 0.00409 0.416 GGGTACTCCAGCGATATCCCGTTGCC Rv1255c_pal_1 sense_fadE7_118_to_stop 2 27 - 1.50575 0.00409 0.416 GGGTACTCCAGCGATATCCCGTTGCC Rv1255c_pal_1 antisense_fadE7_121_to_stop 11 36 - 1.50575 0.00409 0.416 GGCAACGGGATATCGCTGGAGTACCC Rv0047c_nonpal_2 antisense_Rv1461_559_from_start 5 32 + -37.7692 0.0041 0.28 ATTATCGCCGGCAGGGATTACTGTACCG Rv2506_pal_1 sense_pks6_424_from_start 23 38 + -0.536842 0.0041 0.374 CAGATCGTGGGTTCAC Rv2506_pal_1 sense_pks6_423_from_start 23 38 + -0.536842 0.0041 0.374 CAGATCGTGGGTTCAC Rv2506_pal_1 antisense_pks6_431_from_start 10 25 - -0.536842 0.0041 0.374 CAGATCGTGGGTTCAC Rv2506_pal_1 antisense_pks6_430_from_start 10 25 - -0.536842 0.0041 0.374 CAGATCGTGGGTTCAC Rv2324_nonpal_2 antisense_aldA_642_from_start 21 35 - 0.819277 0.0041 0.598 TCAACATCGTCACCT Rv0767c_nonpal_2 10041_up_of_Rv3188 6 26 + 0.367089 0.0041 0.379 TCAAAGCACAAAGTACACCAA Rv0767c_nonpal_2 3360_up_of_Rv3179 6 26 + 0.367089 0.0041 0.379 TCAAAGCACAAAGTACACCAA Rv0767c_nonpal_2 4999_down_of_Rv3180c 6 26 + 0.367089 0.0041 0.379 TCAAAGCACAAAGTACACCAA Rv0767c_nonpal_2 8506_up_of_Rv3186 6 26 + 0.367089 0.0041 0.379 TCAAAGCACAAAGTACACCAA Rv0767c_nonpal_2 13078_down_of_Rv3190c 6 26 + 0.367089 0.0041 0.379 TCAAAGCACAAAGTACACCAA Rv1353c_nonpal_1 antisense_gca_467_from_start 5 19 - 4.45455 0.0041 0.23 ACAAGTCTTACGGCA Rv0047c_pal_1 sense_Rv2038c_183_from_start 14 25 + 4.48485 0.00411 0.345 TGGGCGTATCCG Rv0047c_pal_1 sense_Rv2038c_183_from_start 14 25 - 4.48485 0.00411 0.345 CGGATACGCCCA Rv0767c_nonpal_1 antisense_Rv3282_217_to_stop 20 34 - 3.62857 0.00411 0.445 TCGGCCTCCGATCTG Rv0767c_nonpal_1 447_down_of_accE5 20 34 - 3.62857 0.00411 0.445 TCGGCCTCCGATCTG Rv3133c_nonpal_1 antisense_accA1_595_from_start 25 39 - 4.04348 0.00412 0.447 GGGGACGATACGCTA Rv1956_pal_1 sense_PPE24_1352_to_stop 7 14 + 0.5 0.00412 0.234 CGATACCC Rv1956_pal_1 sense_PPE24_1277_to_stop 7 14 + 0.5 0.00412 0.234 CGATACCC Rv1956_pal_1 sense_PPE24_1577_to_stop 7 14 + 0.5 0.00412 0.234 CGATACCC Rv1956_pal_1 sense_PPE24_1277_to_stop 7 14 - 0.5 0.00412 0.234 GGGTATCG Rv1956_pal_1 sense_PPE24_1577_to_stop 7 14 - 0.5 0.00412 0.234 GGGTATCG Rv1956_pal_1 sense_PPE24_1352_to_stop 7 14 - 0.5 0.00412 0.234 GGGTATCG Rv1956_pal_1 sense_pks9_325_to_stop 24 31 + 0.5 0.00412 0.234 GGCTATCG Rv1956_pal_1 sense_pks9_325_to_stop 24 31 - 0.5 0.00412 0.234 CGATAGCC Rv2011c_nonpal_1 sense_PE_PGRS57_112_from_start 4 22 + 4.24286 0.00412 0.656 GCCAGTGCGACCACGCAGG Rv2011c_nonpal_1 sense_PE_PGRS54_112_from_start 4 22 + 4.24286 0.00412 0.656 GCCAGTGCGACCACGCAGG Rv2887_nonpal_1 antisense_Rv1461_416_from_start 18 32 + -0.6125 0.00412 0.519 TCCAGCTACTAATCT Rv1423_nonpal_2 sense_Rv2963_537_to_stop 5 24 + -21.2979 0.00413 1 TATCGCGGCATGGGTACCCG Rv2887_nonpal_1 sense_metA_384_from_start 6 20 - -0.625 0.00414 0.519 TCAGCGGAAATCTTG Rv1359_nonpal_1 antisense_Rv2963_530_to_stop 5 32 + -12.9038 0.00414 0.287 AAGCTCTGCCAGAACGATTCGGGTACCC Rv1674c_pal_1 4999_down_of_Rv3180c 8 29 + 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 13078_down_of_Rv3190c 8 29 + 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 8506_up_of_Rv3186 8 29 + 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 3360_up_of_Rv3179 8 29 + 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 10041_up_of_Rv3188 8 29 + 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 4992_down_of_Rv3180c 19 40 + 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 3353_up_of_Rv3179 19 40 + 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 10034_up_of_Rv3188 19 40 + 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 8499_up_of_Rv3186 19 40 + 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 13071_down_of_Rv3190c 19 40 + 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 4999_down_of_Rv3180c 8 29 - 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 13078_down_of_Rv3190c 8 29 - 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 8506_up_of_Rv3186 8 29 - 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 10041_up_of_Rv3188 8 29 - 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 3360_up_of_Rv3179 8 29 - 0.260417 0.00415 0.103 CGATTGGTGTACTTTGTGCTTT Rv1674c_pal_1 4992_down_of_Rv3180c 19 40 - 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 8499_up_of_Rv3186 19 40 - 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 13071_down_of_Rv3190c 19 40 - 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 3353_up_of_Rv3179 19 40 - 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1674c_pal_1 10034_up_of_Rv3188 19 40 - 0.260417 0.00415 0.103 AAAGCACAAAGTACACCAATCG Rv1359_nonpal_1 sense_mmpL4_1184_to_stop 12 39 - -12.9231 0.00416 0.287 AATAGCTTCGAATTGGTCTCCAGAAATC Rv3676_nonpal_1 antisense_gca_467_from_start 3 23 - -12.0769 0.00416 1 TATCACAAGTCTTACGGCATG Rv3488_nonpal_2 antisense_pyrC_541_to_stop 10 37 + -33.0851 0.00416 0.223 CCTCGGCGGTGATCGAAATACCCTGGTC Rv3488_nonpal_2 sense_pyrC_548_to_stop 11 38 - -33.0851 0.00416 0.223 CCTCGGCGGTGATCGAAATACCCTGGTC Rv0691c_pal_2 sense_rocA_797_to_stop 17 25 + -1.48101 0.00416 0.593 GGTACCAAT Rv0691c_pal_2 antisense_rocA_790_to_stop 23 31 + -1.48101 0.00416 0.593 ATTGGTACC Rv0691c_pal_2 sense_rocA_797_to_stop 17 25 - -1.48101 0.00416 0.593 ATTGGTACC Rv0691c_pal_2 antisense_rocA_790_to_stop 23 31 - -1.48101 0.00416 0.593 GGTACCAAT Rv2011c_pal_1 sense_Rv2038c_183_from_start 20 34 + 4.55556 0.00416 0.592 TATCCGGATCGGCGA Rv2011c_pal_1 sense_Rv2038c_183_from_start 20 34 - 4.55556 0.00416 0.592 TCGCCGATCCGGATA Rv1219c_nonpal_1 10_up_of_Rv1866 14 28 - 0.443038 0.00416 0.599 TCGGTGCCTCCAGCA Rv0678_nonpal_1 antisense_Rv1461_416_from_start 7 21 - 4.25 0.00417 0.213 TGGAGTAGCCGCACA Rv0302_nonpal_1 antisense_PPE24_1570_to_stop 7 21 + 3.36232 0.00417 0.421 ACTAAAGCCACCGAT Rv0302_nonpal_1 antisense_PPE24_1345_to_stop 7 21 + 3.36232 0.00417 0.421 ACTAAAGCCACCGAT Rv0302_nonpal_1 antisense_PPE24_1270_to_stop 7 21 + 3.36232 0.00417 0.421 ACTAAAGCCACCGAT Rv0023_pal_2 antisense_aldA_642_from_start 14 29 + 3.24675 0.00418 0.341 CTGCTGGAGGTGACGA Rv0023_pal_2 antisense_aldA_642_from_start 14 29 - 3.24675 0.00418 0.341 TCGTCACCTCCAGCAG Rv0135c_nonpal_1 10_up_of_Rv1866 19 29 + 0.515625 0.00418 0.448 GAGGCACCGAT Rv2250c_nonpal_1 1662_up_of_Rv2018 19 28 + 3.4058 0.00418 0.325 CAGTGAAATT Rv0022c_nonpal_1 sense_Rv2038c_183_from_start 17 31 - 2.10959 0.00419 0.211 CCGATCCGGATACGC Rv1719_pal_1 sense_accA1_598_from_start 25 39 + 4.0875 0.00419 1 GTTTGTGTTGCGGCC Rv1994c_pal_1 antisense_treZ_470_to_stop 24 38 + 3.44595 0.0042 0.118 CCCCCACTCTTCGCC Rv1994c_pal_1 antisense_treY_785_to_stop 24 38 + 3.44595 0.0042 0.118 CCCCCACTCTTCGCC Rv1994c_pal_1 880_up_of_treZ 24 38 + 3.44595 0.0042 0.118 CCCCCACTCTTCGCC Rv1994c_pal_1 antisense_treZ_470_to_stop 24 38 - 3.44595 0.0042 0.118 GGCGAAGAGTGGGGG Rv1994c_pal_1 antisense_treY_785_to_stop 24 38 - 3.44595 0.0042 0.118 GGCGAAGAGTGGGGG Rv1994c_pal_1 880_up_of_treZ 24 38 - 3.44595 0.0042 0.118 GGCGAAGAGTGGGGG Rv0678_nonpal_1 sense_fadE7_118_to_stop 9 23 + 4.23438 0.0042 0.213 GGATATCGCTGGAGT Rv0678_nonpal_1 antisense_fadE7_121_to_stop 15 29 - 4.23438 0.0042 0.213 GGATATCGCTGGAGT Rv1219c_nonpal_2 antisense_Rv1251c_1309_from_start 5 32 - -42.5214 0.0042 0.491 GCTTGAAGGCGCTGGAGCCGCTGTACCT Rv0302_pal_1 5189_up_of_Rv3186 15 26 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 1682_down_of_Rv3180c 15 26 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 9761_down_of_Rv3190c 15 26 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 43_up_of_Rv3179 15 26 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 6724_up_of_Rv3188 15 26 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 5188_up_of_Rv3186 16 27 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 9760_down_of_Rv3190c 16 27 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 42_up_of_Rv3179 16 27 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 6723_up_of_Rv3188 16 27 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 1681_down_of_Rv3180c 16 27 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 5195_up_of_Rv3186 21 32 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 1688_down_of_Rv3180c 21 32 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 9767_down_of_Rv3190c 21 32 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 49_up_of_Rv3179 21 32 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 6730_up_of_Rv3188 21 32 + 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 6717_up_of_Rv3188 22 33 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 36_up_of_Rv3179 22 33 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 1675_down_of_Rv3180c 22 33 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 9754_down_of_Rv3190c 22 33 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 5182_up_of_Rv3186 22 33 + 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 5189_up_of_Rv3186 15 26 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 1682_down_of_Rv3180c 15 26 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 9761_down_of_Rv3190c 15 26 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 43_up_of_Rv3179 15 26 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 6724_up_of_Rv3188 15 26 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 5188_up_of_Rv3186 16 27 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 1681_down_of_Rv3180c 16 27 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 9760_down_of_Rv3190c 16 27 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 42_up_of_Rv3179 16 27 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 6723_up_of_Rv3188 16 27 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 5195_up_of_Rv3186 21 32 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 1688_down_of_Rv3180c 21 32 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 9767_down_of_Rv3190c 21 32 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 49_up_of_Rv3179 21 32 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 6730_up_of_Rv3188 21 32 - 4.57353 0.0042 0.249 TACTGATCGGTG Rv0302_pal_1 5182_up_of_Rv3186 22 33 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 9754_down_of_Rv3190c 22 33 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 1675_down_of_Rv3180c 22 33 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 6717_up_of_Rv3188 22 33 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv0302_pal_1 36_up_of_Rv3179 22 33 - 4.57353 0.0042 0.249 CACCGATCAGTA Rv1846c_nonpal_1 antisense_gca_467_from_start 5 26 + -14.0745 0.0042 0.329 TGCCGTAAGACTTGTGATATTG Rv0465c_nonpal_1 sense_rocA_797_to_stop 9 32 - -16.2299 0.00421 0.672 GGCCGATATTGGTACCCACCCACT Rv0465c_nonpal_1 antisense_rocA_790_to_stop 16 39 + -16.2299 0.00421 0.672 GGCCGATATTGGTACCCACCCACT Rv0047c_pal_1 sense_metA_384_from_start 5 16 + 4.43939 0.00421 0.345 TCAAGATTTCCG Rv0047c_pal_1 sense_metA_384_from_start 5 16 - 4.43939 0.00421 0.345 CGGAAATCTTGA Rv3246c_pal_1 sense_gca_460_from_start 7 22 + 3.70732 0.00421 0.114 GACATGCTGGCGTATC Rv3246c_pal_1 sense_gca_460_from_start 7 22 - 3.70732 0.00421 0.114 GATACGCCAGCATGTC Rv1719_pal_1 sense_accA1_598_from_start 25 39 - 4.075 0.00421 1 GGCCGCAACACAAAC Rv2887_pal_1 antisense_pyrC_541_to_stop 8 22 + 1.5 0.00421 0.382 GACCTCGGCGGTGAT Rv2887_pal_1 antisense_pyrC_541_to_stop 8 22 - 1.5 0.00421 0.382 ATCACCGCCGAGGTC Rv2887_pal_1 sense_pyrC_548_to_stop 26 40 + 1.5 0.00421 0.382 ATCACCGCCGAGGTC Rv2887_pal_1 sense_pyrC_548_to_stop 26 40 - 1.5 0.00421 0.382 GACCTCGGCGGTGAT Rv3488_pal_1 1662_up_of_Rv2018 33 40 + -0.955882 0.00421 0.311 CAAGATCG Rv3488_pal_1 1662_up_of_Rv2018 33 40 - -0.955882 0.00421 0.311 CGATCTTG Rv0653c_nonpal_1 sense_pks6_424_from_start 12 30 + -0.21519 0.00421 0.18 AACAGCGTATCCAGATCGT Rv0653c_nonpal_1 sense_pks6_423_from_start 12 30 + -0.21519 0.00421 0.18 AACAGCGTATCCAGATCGT Rv0653c_nonpal_1 antisense_pks6_431_from_start 18 36 - -0.21519 0.00421 0.18 AACAGCGTATCCAGATCGT Rv0653c_nonpal_1 antisense_pks6_430_from_start 18 36 - -0.21519 0.00421 0.18 AACAGCGTATCCAGATCGT Rv3849_nonpal_1 10_up_of_Rv1866 8 19 + -0.90411 0.00421 0.549 CTGTTCTGCTGG Rv3681c_pal_1 sense_metA_384_from_start 6 19 + 3.63095 0.00421 0.46 CAAGATTTCCGCTG Rv3681c_pal_1 sense_metA_384_from_start 6 19 - 3.63095 0.00421 0.46 CAGCGGAAATCTTG Rv3765c_nonpal_1 sense_Rv0674_10_to_stop 11 30 + -8.4 0.00422 0.497 AACTCCTGGAGGTGACATGA Rv3849_nonpal_1 sense_mptA_23_from_start 26 37 + -0.917808 0.00422 0.549 TGATTTGGCTAC Rv3849_nonpal_1 37_up_of_Rv2172c 26 37 + -0.917808 0.00422 0.549 TGATTTGGCTAC Rv0602c_pal_1 antisense_Rv0370c_389_from_start 3 10 + -0.797468 0.00423 0.135 TCGATGAG Rv0602c_pal_1 antisense_Rv0370c_389_from_start 3 10 - -0.797468 0.00423 0.135 CTCATCGA Rv0023_pal_1 sense_PPE34_3066_to_stop 9 16 + -1.93671 0.00423 0.474 CGGATTCC Rv0023_pal_1 sense_PPE34_1664_from_start 9 16 + -1.93671 0.00423 0.474 CGGATTCC Rv0023_pal_1 sense_PPE34_1439_from_start 9 16 + -1.93671 0.00423 0.474 CGGATTCC Rv0023_pal_1 sense_PPE34_3066_to_stop 9 16 - -1.93671 0.00423 0.474 GGAATCCG Rv0023_pal_1 sense_PPE34_1664_from_start 9 16 - -1.93671 0.00423 0.474 GGAATCCG Rv0023_pal_1 sense_PPE34_1439_from_start 9 16 - -1.93671 0.00423 0.474 GGAATCCG Rv0023_pal_1 antisense_PPE34_1661_from_start 22 29 + -1.93671 0.00423 0.474 GGAATCCG Rv0023_pal_1 antisense_PPE34_1661_from_start 22 29 - -1.93671 0.00423 0.474 CGGATTCC Rv0880_nonpal_1 antisense_metA_391_from_start 5 28 - -7.96842 0.00423 0.189 ATCTCGATACGTGACCAGGTGCAG Rv0678_nonpal_1 antisense_rocA_790_to_stop 10 24 + 4.21875 0.00423 0.213 GGTAGCGGCCGATAT Rv0678_nonpal_1 sense_pks9_325_to_stop 3 17 - 4.21875 0.00423 0.213 AGACGATTGCGTAGT Rv0678_nonpal_1 sense_rocA_797_to_stop 24 38 - 4.21875 0.00423 0.213 GGTAGCGGCCGATAT Rv0135c_nonpal_2 antisense_frdA_787_from_start 4 31 - -24 0.00424 0.464 TACCGCTACCTCCAGGATTACGACCTCG Rv3574_nonpal_1 antisense_PPE24_1345_to_stop 17 31 + 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv3574_nonpal_1 antisense_PPE24_1270_to_stop 17 31 + 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv3574_nonpal_1 antisense_PPE24_1570_to_stop 17 31 + 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv3574_nonpal_1 sense_PPE24_1352_to_stop 17 31 - 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv3574_nonpal_1 sense_PPE24_1577_to_stop 17 31 - 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv3574_nonpal_1 sense_PPE24_1277_to_stop 17 31 - 0.0294118 0.00424 0.255 CCGATTGTGATACCC Rv1473A_nonpal_1 antisense_Rv2963_530_to_stop 1 14 - -5.35616 0.00424 0.433 GGCAGAGCTTCTTT Rv0047c_pal_1 sense_Rv1461_552_from_start 15 26 + 4.42424 0.00424 0.345 TCGGTACAGTAA Rv0047c_pal_1 antisense_Rv1461_559_from_start 22 33 + 4.42424 0.00424 0.345 TTACTGTACCGA Rv0047c_pal_1 sense_Rv1461_552_from_start 15 26 - 4.42424 0.00424 0.345 TTACTGTACCGA Rv0047c_pal_1 antisense_Rv1461_559_from_start 22 33 - 4.42424 0.00424 0.345 TCGGTACAGTAA Rv1359_nonpal_1 sense_Rv2963_537_to_stop 1 28 + -13.0192 0.00424 0.287 GTGCTATCGCGGCATGGGTACCCGAATC Rv0678_nonpal_2 antisense_frdA_787_from_start 1 25 - -43.7521 0.00425 1 TACCTCCAGGATTACGACCTCGGCA Rv0465c_pal_1 antisense_Rv1461_416_from_start 1 28 + -3.53409 0.00426 0.236 TCGTATTGTGCGGCTACTCCAGCTACTA Rv0465c_pal_1 antisense_Rv1461_416_from_start 1 28 - -3.53409 0.00426 0.236 TAGTAGCTGGAGTAGCCGCACAATACGA Rv2374c_nonpal_1 37_up_of_Rv2172c 6 33 - -11.1346 0.00426 0.42 CCAAATCAACCGCTGGAGCATGGCTCGG Rv2374c_nonpal_1 sense_mptA_23_from_start 6 33 - -11.1346 0.00426 0.42 CCAAATCAACCGCTGGAGCATGGCTCGG Rv3830c_nonpal_1 1662_up_of_Rv2018 19 33 - 1.21622 0.00427 0.821 GTATCAATTTCACTG Rv2034_pal_2 sense_Rv1278_1158_to_stop 25 31 + 0.0632911 0.00427 0.705 TCGCTGA Rv2034_pal_2 sense_Rv1278_1158_to_stop 25 31 - 0.0632911 0.00427 0.705 TCAGCGA Rv2034_pal_2 sense_bioB_253_to_stop 32 38 + 0.0632911 0.00427 0.705 TCGGTGA Rv2034_pal_2 antisense_treY_785_to_stop 34 40 + 0.0632911 0.00427 0.705 TCGCCCA Rv2034_pal_2 880_up_of_treZ 34 40 + 0.0632911 0.00427 0.705 TCGCCCA Rv2034_pal_2 antisense_mmpL4_1187_to_stop 34 40 + 0.0632911 0.00427 0.705 TCCGCGA Rv2034_pal_2 antisense_treZ_470_to_stop 34 40 + 0.0632911 0.00427 0.705 TCGCCCA Rv2034_pal_2 sense_bioB_253_to_stop 32 38 - 0.0632911 0.00427 0.705 TCACCGA Rv2034_pal_2 antisense_treZ_470_to_stop 34 40 - 0.0632911 0.00427 0.705 TGGGCGA Rv2034_pal_2 antisense_mmpL4_1187_to_stop 34 40 - 0.0632911 0.00427 0.705 TCGCGGA Rv2034_pal_2 antisense_treY_785_to_stop 34 40 - 0.0632911 0.00427 0.705 TGGGCGA Rv2034_pal_2 880_up_of_treZ 34 40 - 0.0632911 0.00427 0.705 TGGGCGA Rv0602c_nonpal_1 antisense_Rv2279_293_to_stop 9 20 - 0.369863 0.00427 0.481 TACACATCGATC Rv0602c_nonpal_1 sense_Rv2279_300_to_stop 28 39 + 0.369863 0.00427 0.481 TACACATCGATC Rv0653c_pal_1 antisense_cobK_311_from_start 1 24 + 1.79747 0.00427 0.129 ATACCGCGATGATGGCGGTACCGG Rv0653c_pal_1 antisense_cobK_311_from_start 1 24 - 1.79747 0.00427 0.129 CCGGTACCGCCATCATCGCGGTAT Rv2642_nonpal_1 sense_accA1_598_from_start 11 35 + -4.02326 0.00427 0.254 CTATTCCTGGAGCGGTTTGTGTTGC Rv2642_nonpal_1 antisense_accA1_595_from_start 3 27 - -4.02326 0.00427 0.254 CTATTCCTGGAGCGGTTTGTGTTGC Rv3557c_nonpal_1 37_up_of_Rv2172c 9 28 - -15.7404 0.00428 0.341 TCAACCGCTGGAGCATGGCT Rv3557c_nonpal_1 sense_mptA_23_from_start 9 28 - -15.7404 0.00428 0.341 TCAACCGCTGGAGCATGGCT Rv2034_pal_1 9760_down_of_Rv3190c 7 22 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 1681_down_of_Rv3180c 7 22 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 6723_up_of_Rv3188 7 22 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 5188_up_of_Rv3186 7 22 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 42_up_of_Rv3179 7 22 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 36_up_of_Rv3179 13 28 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 5182_up_of_Rv3186 13 28 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 9754_down_of_Rv3190c 13 28 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 6717_up_of_Rv3188 13 28 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 1675_down_of_Rv3180c 13 28 + 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 9761_down_of_Rv3190c 20 35 + 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 6724_up_of_Rv3188 20 35 + 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 43_up_of_Rv3179 20 35 + 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 1682_down_of_Rv3180c 20 35 + 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 5189_up_of_Rv3186 20 35 + 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 9760_down_of_Rv3190c 7 22 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 6723_up_of_Rv3188 7 22 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 42_up_of_Rv3179 7 22 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 1681_down_of_Rv3180c 7 22 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 5188_up_of_Rv3186 7 22 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 5182_up_of_Rv3186 13 28 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 9754_down_of_Rv3190c 13 28 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 1675_down_of_Rv3180c 13 28 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 6717_up_of_Rv3188 13 28 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 36_up_of_Rv3179 13 28 - 0.3875 0.00428 0.501 ATCAGTATACAAGGAG Rv2034_pal_1 9761_down_of_Rv3190c 20 35 - 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 6724_up_of_Rv3188 20 35 - 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 43_up_of_Rv3179 20 35 - 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 5189_up_of_Rv3186 20 35 - 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv2034_pal_1 1682_down_of_Rv3180c 20 35 - 0.3875 0.00428 0.501 CTCCTTGTATACTGAT Rv1353c_nonpal_1 sense_fadE7_118_to_stop 16 30 + 4.36364 0.00428 0.23 GCTGGAGTACCCGGT Rv1353c_nonpal_1 antisense_fadE7_121_to_stop 8 22 - 4.36364 0.00428 0.23 GCTGGAGTACCCGGT Rv1719_nonpal_2 sense_Rv1278_1158_to_stop 9 29 - -1.74118 0.00429 1 AGCGACCTCTCCAGCCGCCAG Rv1167c_nonpal_1 sense_pyrC_548_to_stop 25 39 - -4.97115 0.0043 0.759 ACCTCGGCGGTGATC Rv1167c_nonpal_1 antisense_pyrC_541_to_stop 9 23 + -4.97115 0.0043 0.759 ACCTCGGCGGTGATC Rv1956_nonpal_1 antisense_cobK_311_from_start 9 29 + -0.651163 0.0043 0.286 ATGATGGCGGTACCGGGATCC Rv1956_nonpal_1 sense_cobK_304_from_start 19 39 - -0.651163 0.0043 0.286 ATGATGGCGGTACCGGGATCC Rv1828_nonpal_1 sense_bioB_253_to_stop 11 34 + -9.20213 0.0043 0.317 CCGACCTGGAGGTAATGCCGGTCG Rv2989_nonpal_2 antisense_Rv1461_559_from_start 2 16 - -2.8046 0.0043 0.991 GCCGGCGATAATAAG Rv3488_nonpal_1 sense_cobK_304_from_start 25 38 - -3.41176 0.0043 0.313 TGATGGCGGTACCG Rv3488_nonpal_1 antisense_cobK_311_from_start 10 23 + -3.41176 0.0043 0.313 TGATGGCGGTACCG Rv0302_nonpal_1 37_up_of_Rv2172c 15 29 + 3.28986 0.0043 0.421 GCTCCAGCGGTTGAT Rv0302_nonpal_1 sense_mptA_23_from_start 15 29 + 3.28986 0.0043 0.421 GCTCCAGCGGTTGAT Rv3249c_nonpal_1 49_up_of_Rv3179 4 14 - 3.32812 0.00431 0.47 TAACCGACACT Rv3249c_nonpal_1 6730_up_of_Rv3188 4 14 - 3.32812 0.00431 0.47 TAACCGACACT Rv3249c_nonpal_1 1688_down_of_Rv3180c 4 14 - 3.32812 0.00431 0.47 TAACCGACACT Rv3249c_nonpal_1 9767_down_of_Rv3190c 4 14 - 3.32812 0.00431 0.47 TAACCGACACT Rv3249c_nonpal_1 5195_up_of_Rv3186 4 14 - 3.32812 0.00431 0.47 TAACCGACACT Rv0767c_nonpal_1 antisense_Rv2279_293_to_stop 6 20 + 3.51429 0.00431 0.445 CCGGATCGATGTGTA Rv2989_nonpal_2 antisense_mmpL4_1187_to_stop 2 16 - -2.81609 0.00431 0.991 GACCAATTCGAAGCT Rv2989_nonpal_2 sense_mmpL4_1184_to_stop 22 36 + -2.81609 0.00431 0.991 GACCAATTCGAAGCT Rv3574_nonpal_2 13071_down_of_Rv3190c 7 34 + -39.4444 0.00432 0.397 CCTACAGTAAACCGATTGGTGTACTTTG Rv3574_nonpal_2 10034_up_of_Rv3188 7 34 + -39.4444 0.00432 0.397 CCTACAGTAAACCGATTGGTGTACTTTG Rv3574_nonpal_2 8499_up_of_Rv3186 7 34 + -39.4444 0.00432 0.397 CCTACAGTAAACCGATTGGTGTACTTTG Rv3574_nonpal_2 3353_up_of_Rv3179 7 34 + -39.4444 0.00432 0.397 CCTACAGTAAACCGATTGGTGTACTTTG Rv3574_nonpal_2 4992_down_of_Rv3180c 7 34 + -39.4444 0.00432 0.397 CCTACAGTAAACCGATTGGTGTACTTTG Rv0135c_nonpal_1 antisense_Rv1461_559_from_start 3 13 + 0.359375 0.00432 0.449 TTATTATCGCC Rv0023_nonpal_1 antisense_frdA_787_from_start 2 22 + 3.5493 0.00433 0.14 GCCGAGGTCGTAATCCTGGAG Rv3488_nonpal_1 93_up_of_lpqG 27 40 + -3.44118 0.00433 0.313 GTACCCCGAAATTC Rv1776c_pal_1 4_up_of_Rv1049 2 16 + 2.93902 0.00433 1 GTAGCTACACGAGTC Rv1776c_pal_1 4_up_of_Rv1049 2 16 - 2.93902 0.00433 1 GACTCGTGTAGCTAC Rv1776c_pal_1 7_up_of_Rv1049 22 36 + 2.93902 0.00433 1 GACTCGTGTAGCTAC Rv1776c_pal_1 7_up_of_Rv1049 22 36 - 2.93902 0.00433 1 GTAGCTACACGAGTC Rv2989_nonpal_2 antisense_Rv2963_530_to_stop 8 22 - -2.83908 0.00434 0.991 ATCGTTCTGGCAGAG Rv2989_nonpal_2 sense_Rv2963_537_to_stop 26 40 + -2.83908 0.00434 0.991 ATCGTTCTGGCAGAG Rv0967_pal_2 sense_bioB_253_to_stop 20 30 + -1.67089 0.00435 0.887 AGGTAATGCCG Rv0967_pal_2 sense_bioB_253_to_stop 20 30 - -1.67089 0.00435 0.887 CGGCATTACCT Rv3574_nonpal_1 sense_PPE24_1577_to_stop 23 37 + -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv3574_nonpal_1 sense_PPE24_1352_to_stop 23 37 + -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv3574_nonpal_1 sense_PPE24_1277_to_stop 23 37 + -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv3574_nonpal_1 antisense_PPE24_1570_to_stop 11 25 - -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv3574_nonpal_1 antisense_PPE24_1345_to_stop 11 25 - -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv3574_nonpal_1 antisense_PPE24_1270_to_stop 11 25 - -0.0882353 0.00435 0.255 CACAATCGGTGGCTT Rv1219c_pal_1 antisense_pyrC_541_to_stop 16 24 + 2.89873 0.00435 0.313 CGGTGATCG Rv1219c_pal_1 antisense_pyrC_541_to_stop 16 24 - 2.89873 0.00435 0.313 CGATCACCG Rv1219c_pal_1 sense_pyrC_548_to_stop 24 32 + 2.89873 0.00435 0.313 CGATCACCG Rv1219c_pal_1 sense_pyrC_548_to_stop 24 32 - 2.89873 0.00435 0.313 CGGTGATCG Rv2788_nonpal_2 9754_down_of_Rv3190c 2 29 - -22.4419 0.00436 0.459 GATCAGTATACAAGGAGTCGGCGTGCCC Rv2788_nonpal_2 5182_up_of_Rv3186 2 29 - -22.4419 0.00436 0.459 GATCAGTATACAAGGAGTCGGCGTGCCC Rv2788_nonpal_2 1675_down_of_Rv3180c 2 29 - -22.4419 0.00436 0.459 GATCAGTATACAAGGAGTCGGCGTGCCC Rv2788_nonpal_2 6717_up_of_Rv3188 2 29 - -22.4419 0.00436 0.459 GATCAGTATACAAGGAGTCGGCGTGCCC Rv2788_nonpal_2 36_up_of_Rv3179 2 29 - -22.4419 0.00436 0.459 GATCAGTATACAAGGAGTCGGCGTGCCC Rv0678_nonpal_1 1662_up_of_Rv2018 5 19 - 4.15625 0.00436 0.217 GGAGAAGGCCGATTC Rv0081_nonpal_2 sense_metA_384_from_start 17 38 + -26.8173 0.00436 0.632 CTGATCTCGATACGTGACCAGG Rv0081_nonpal_2 antisense_metA_391_from_start 10 31 - -26.8173 0.00436 0.632 CTGATCTCGATACGTGACCAGG Rv0494_pal_1 antisense_PPE24_1270_to_stop 2 18 + 3.15 0.00437 1 GGTAGACTAAAGCCACC Rv0494_pal_1 antisense_PPE24_1570_to_stop 2 18 + 3.15 0.00437 1 GGTAGACTAAAGCCACC Rv0494_pal_1 antisense_PPE24_1345_to_stop 2 18 + 3.15 0.00437 1 GGTAGACTAAAGCCACC Rv0494_pal_1 antisense_PPE24_1570_to_stop 2 18 - 3.15 0.00437 1 GGTGGCTTTAGTCTACC Rv0494_pal_1 antisense_PPE24_1345_to_stop 2 18 - 3.15 0.00437 1 GGTGGCTTTAGTCTACC Rv0494_pal_1 antisense_PPE24_1270_to_stop 2 18 - 3.15 0.00437 1 GGTGGCTTTAGTCTACC Rv0880_nonpal_1 1662_up_of_Rv2018 16 39 + -8.11579 0.00437 0.189 CTCCAGTGAAATTGATACAAGATC Rv2989_nonpal_2 antisense_mmpL4_1187_to_stop 24 38 - -2.87356 0.00437 0.991 GCGGATTTTGATGAT Rv0324_nonpal_1 sense_fadE7_118_to_stop 27 34 + -2.61765 0.00438 0.34 CGGTCATC Rv0324_nonpal_1 antisense_fadE7_121_to_stop 4 11 - -2.61765 0.00438 0.34 CGGTCATC Rv3849_nonpal_1 13078_down_of_Rv3190c 3 14 - -1.09589 0.00438 0.549 GTGCTTTGACGG Rv3849_nonpal_1 8506_up_of_Rv3186 3 14 - -1.09589 0.00438 0.549 GTGCTTTGACGG Rv3849_nonpal_1 3360_up_of_Rv3179 3 14 - -1.09589 0.00438 0.549 GTGCTTTGACGG Rv3849_nonpal_1 4999_down_of_Rv3180c 3 14 - -1.09589 0.00438 0.549 GTGCTTTGACGG Rv3849_nonpal_1 10041_up_of_Rv3188 3 14 - -1.09589 0.00438 0.549 GTGCTTTGACGG Rv0967_nonpal_2 10_up_of_Rv1866 15 35 - -16.7128 0.00438 1 CACCATATCGGTGCCTCCAGC Rv0757_pal_1 sense_fadE7_118_to_stop 6 19 + 3.86076 0.00438 0.719 ACGGGATATCGCTG Rv0757_pal_1 antisense_fadE7_121_to_stop 19 32 + 3.86076 0.00438 0.719 CAGCGATATCCCGT Rv0757_pal_1 sense_fadE7_118_to_stop 6 19 - 3.86076 0.00438 0.719 CAGCGATATCCCGT Rv0757_pal_1 antisense_fadE7_121_to_stop 19 32 - 3.86076 0.00438 0.719 ACGGGATATCGCTG Rv1473A_nonpal_1 antisense_aldA_642_from_start 18 31 + -5.50685 0.00438 0.433 TGGAGGTGACGATG Rv2034_nonpal_1 antisense_pks6_431_from_start 8 18 + 4.55882 0.00438 0.359 TCGTGAACCCA Rv2034_nonpal_1 antisense_pks6_430_from_start 8 18 + 4.55882 0.00438 0.359 TCGTGAACCCA Rv2034_nonpal_1 sense_pks6_423_from_start 30 40 - 4.55882 0.00438 0.359 TCGTGAACCCA Rv2034_nonpal_1 sense_pks6_424_from_start 30 40 - 4.55882 0.00438 0.359 TCGTGAACCCA Rv0022c_pal_1 4992_down_of_Rv3180c 2 23 + 2.28378 0.00438 0.168 GACCTCCTACAGTAAACCGATT Rv0022c_pal_1 8499_up_of_Rv3186 2 23 + 2.28378 0.00438 0.168 GACCTCCTACAGTAAACCGATT Rv0022c_pal_1 3353_up_of_Rv3179 2 23 + 2.28378 0.00438 0.168 GACCTCCTACAGTAAACCGATT Rv0022c_pal_1 13071_down_of_Rv3190c 2 23 + 2.28378 0.00438 0.168 GACCTCCTACAGTAAACCGATT Rv0022c_pal_1 10034_up_of_Rv3188 2 23 + 2.28378 0.00438 0.168 GACCTCCTACAGTAAACCGATT Rv0022c_pal_1 13071_down_of_Rv3190c 2 23 - 2.28378 0.00438 0.168 AATCGGTTTACTGTAGGAGGTC Rv0022c_pal_1 3353_up_of_Rv3179 2 23 - 2.28378 0.00438 0.168 AATCGGTTTACTGTAGGAGGTC Rv0022c_pal_1 8499_up_of_Rv3186 2 23 - 2.28378 0.00438 0.168 AATCGGTTTACTGTAGGAGGTC Rv0022c_pal_1 10034_up_of_Rv3188 2 23 - 2.28378 0.00438 0.168 AATCGGTTTACTGTAGGAGGTC Rv0022c_pal_1 4992_down_of_Rv3180c 2 23 - 2.28378 0.00438 0.168 AATCGGTTTACTGTAGGAGGTC Rv2887_nonpal_1 sense_Rv1278_1158_to_stop 19 33 + -0.825 0.00438 0.519 GAGAGGTCGCTGACC Rv1049_nonpal_1 sense_accA1_598_from_start 26 40 - 3.48571 0.00438 1 GGGCCGCAACACAAA Rv0494_nonpal_2 antisense_Rv1251c_1309_from_start 4 18 - -7.11579 0.00439 1 GAGCCGCTGTACCTC Rv0767c_nonpal_2 1681_down_of_Rv3180c 12 32 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 6723_up_of_Rv3188 12 32 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 42_up_of_Rv3179 12 32 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 5188_up_of_Rv3186 12 32 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 9760_down_of_Rv3190c 12 32 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 5182_up_of_Rv3186 18 38 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 9754_down_of_Rv3190c 18 38 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 1675_down_of_Rv3180c 18 38 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 6717_up_of_Rv3188 18 38 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 36_up_of_Rv3179 18 38 + 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 9761_down_of_Rv3190c 10 30 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 43_up_of_Rv3179 10 30 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 1682_down_of_Rv3180c 10 30 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 6724_up_of_Rv3188 10 30 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 5189_up_of_Rv3186 10 30 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 9767_down_of_Rv3190c 16 36 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 49_up_of_Rv3179 16 36 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 6730_up_of_Rv3188 16 36 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 5195_up_of_Rv3186 16 36 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv0767c_nonpal_2 1688_down_of_Rv3180c 16 36 - 0.126582 0.00439 0.379 TGTATACTGATCGGTGTACTT Rv1846c_pal_1 5189_up_of_Rv3186 11 25 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 43_up_of_Rv3179 11 25 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 1682_down_of_Rv3180c 11 25 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 9761_down_of_Rv3190c 11 25 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 6724_up_of_Rv3188 11 25 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 5195_up_of_Rv3186 17 31 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 1681_down_of_Rv3180c 17 31 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 5188_up_of_Rv3186 17 31 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 9767_down_of_Rv3190c 17 31 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 9760_down_of_Rv3190c 17 31 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 1688_down_of_Rv3180c 17 31 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 49_up_of_Rv3179 17 31 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 6723_up_of_Rv3188 17 31 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 42_up_of_Rv3179 17 31 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 6730_up_of_Rv3188 17 31 + -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 36_up_of_Rv3179 23 37 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 5182_up_of_Rv3186 23 37 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 1675_down_of_Rv3180c 23 37 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 9754_down_of_Rv3190c 23 37 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 6717_up_of_Rv3188 23 37 + -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 5189_up_of_Rv3186 11 25 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 9761_down_of_Rv3190c 11 25 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 43_up_of_Rv3179 11 25 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 6724_up_of_Rv3188 11 25 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 1682_down_of_Rv3180c 11 25 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 5188_up_of_Rv3186 17 31 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 9767_down_of_Rv3190c 17 31 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 49_up_of_Rv3179 17 31 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 9760_down_of_Rv3190c 17 31 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 1688_down_of_Rv3180c 17 31 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 6730_up_of_Rv3188 17 31 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 42_up_of_Rv3179 17 31 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 6723_up_of_Rv3188 17 31 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 1681_down_of_Rv3180c 17 31 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 5195_up_of_Rv3186 17 31 - -2 0.00439 0.239 ACTGATCGGTGTACT Rv1846c_pal_1 36_up_of_Rv3179 23 37 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 1675_down_of_Rv3180c 23 37 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 9754_down_of_Rv3190c 23 37 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 5182_up_of_Rv3186 23 37 - -2 0.00439 0.239 AGTACACCGATCAGT Rv1846c_pal_1 6717_up_of_Rv3188 23 37 - -2 0.00439 0.239 AGTACACCGATCAGT Rv0653c_nonpal_1 6724_up_of_Rv3188 2 20 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 43_up_of_Rv3179 2 20 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 1682_down_of_Rv3180c 2 20 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 5189_up_of_Rv3186 2 20 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 9761_down_of_Rv3190c 2 20 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 5195_up_of_Rv3186 8 26 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 9767_down_of_Rv3190c 8 26 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 1688_down_of_Rv3180c 8 26 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 49_up_of_Rv3179 8 26 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 6730_up_of_Rv3188 8 26 + -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 6723_up_of_Rv3188 22 40 - -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 1681_down_of_Rv3180c 22 40 - -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 42_up_of_Rv3179 22 40 - -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 5188_up_of_Rv3186 22 40 - -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv0653c_nonpal_1 9760_down_of_Rv3190c 22 40 - -0.367089 0.0044 0.18 TCGGTTATAAGTACACCGA Rv1353c_nonpal_1 6724_up_of_Rv3188 12 26 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 5189_up_of_Rv3186 12 26 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 1682_down_of_Rv3180c 12 26 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 43_up_of_Rv3179 12 26 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 9761_down_of_Rv3190c 12 26 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 6730_up_of_Rv3188 18 32 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 5195_up_of_Rv3186 18 32 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 49_up_of_Rv3179 18 32 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 1688_down_of_Rv3180c 18 32 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 9767_down_of_Rv3190c 18 32 + 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 42_up_of_Rv3179 16 30 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 9760_down_of_Rv3190c 16 30 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 6723_up_of_Rv3188 16 30 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 5188_up_of_Rv3186 16 30 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 1681_down_of_Rv3180c 16 30 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 6717_up_of_Rv3188 22 36 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 5182_up_of_Rv3186 22 36 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 36_up_of_Rv3179 22 36 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 1675_down_of_Rv3180c 22 36 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv1353c_nonpal_1 9754_down_of_Rv3190c 22 36 - 4.30303 0.0044 0.23 GTACACCGATCAGTA Rv3681c_nonpal_1 antisense_Rv1251c_1309_from_start 13 32 - -0.696203 0.0044 0.33 GCTTGAAGGCGCTGGAGCCG Rv0967_pal_2 sense_bioB_253_to_stop 30 40 + -1.70886 0.0044 0.887 GGTCGGTGACG Rv0967_pal_2 sense_bioB_253_to_stop 30 40 - -1.70886 0.0044 0.887 CGTCACCGACC Rv0022c_nonpal_1 antisense_pks6_431_from_start 23 37 + 1.93151 0.00441 0.211 CTGGATACGCTGTTA Rv0022c_nonpal_1 antisense_pks6_430_from_start 23 37 + 1.93151 0.00441 0.211 CTGGATACGCTGTTA Rv0022c_nonpal_1 sense_pks6_424_from_start 11 25 - 1.93151 0.00441 0.211 CTGGATACGCTGTTA Rv0022c_nonpal_1 sense_pks6_423_from_start 11 25 - 1.93151 0.00441 0.211 CTGGATACGCTGTTA Rv1473A_nonpal_1 antisense_Rv1251c_1309_from_start 25 38 - -5.53425 0.00441 0.433 CGTTCAGCTTGAAG Rv0047c_pal_1 antisense_Rv1251c_1309_from_start 4 15 + 4.34848 0.00441 0.345 GAGGTACAGCGG Rv0047c_pal_1 antisense_Rv1251c_1309_from_start 4 15 - 4.34848 0.00441 0.345 CCGCTGTACCTC Rv1674c_nonpal_1 sense_bioB_253_to_stop 19 36 + -8.07447 0.00441 0.357 GAGGTAATGCCGGTCGGT Rv1404_pal_1 antisense_Rv1461_416_from_start 21 33 + 3.925 0.00441 0.186 AGCTACTAATCTC Rv1404_pal_1 antisense_Rv1461_416_from_start 21 33 - 3.925 0.00441 0.186 GAGATTAGTAGCT Rv0602c_nonpal_1 antisense_aldA_642_from_start 3 14 - 0.205479 0.00442 0.481 GTCACGCTTTGG Rv0047c_nonpal_2 sense_rocA_797_to_stop 4 31 + -38.2564 0.00443 0.28 ATGGCAGTGGGTGGGTACCAATATCGGC Rv1473A_pal_2 antisense_Rv1461_559_from_start 5 12 + -2.0411 0.00443 0.233 ATTATCGC Rv1473A_pal_2 antisense_cobK_311_from_start 6 13 + -2.0411 0.00443 0.233 GCGATGAT Rv1473A_pal_2 antisense_cobK_311_from_start 9 16 + -2.0411 0.00443 0.233 ATGATGGC Rv1473A_pal_2 antisense_Rv1461_559_from_start 5 12 - -2.0411 0.00443 0.233 GCGATAAT Rv1473A_pal_2 antisense_cobK_311_from_start 6 13 - -2.0411 0.00443 0.233 ATCATCGC Rv1473A_pal_2 antisense_cobK_311_from_start 9 16 - -2.0411 0.00443 0.233 GCCATCAT Rv1473A_pal_2 sense_cobK_304_from_start 32 39 + -2.0411 0.00443 0.233 GCCATCAT Rv1473A_pal_2 sense_cobK_304_from_start 32 39 - -2.0411 0.00443 0.233 ATGATGGC Rv0465c_nonpal_2 antisense_aldA_642_from_start 1 28 + -9.17241 0.00443 1 CCCCAAAGCGTGACTGCTGGAGGTGACG Rv0135c_nonpal_1 sense_pyrC_548_to_stop 14 24 - 0.234375 0.00443 0.449 GAAATACCCTG Rv0135c_nonpal_1 antisense_pyrC_541_to_stop 24 34 + 0.234375 0.00443 0.449 GAAATACCCTG Rv3488_nonpal_1 sense_fadE7_118_to_stop 1 14 - -3.54412 0.00443 0.313 ATATCCCGTTGCCG Rv3488_nonpal_1 antisense_fadE7_121_to_stop 24 37 + -3.54412 0.00443 0.313 ATATCCCGTTGCCG Rv1956_nonpal_1 antisense_accA1_595_from_start 7 27 + -0.767442 0.00444 0.286 CACAAACCGCTCCAGGAATAG Rv1956_nonpal_1 sense_accA1_598_from_start 11 31 - -0.767442 0.00444 0.286 CACAAACCGCTCCAGGAATAG Rv0081_pal_1 7_up_of_Rv1049 7 22 + 1.4 0.00444 0.443 TTGCCCATTACTCCAG Rv0081_pal_1 4_up_of_Rv1049 16 31 + 1.4 0.00444 0.443 CTGGAGTAATGGGCAA Rv0081_pal_1 7_up_of_Rv1049 7 22 - 1.4 0.00444 0.443 CTGGAGTAATGGGCAA Rv0081_pal_1 4_up_of_Rv1049 16 31 - 1.4 0.00444 0.443 TTGCCCATTACTCCAG Rv0302_nonpal_1 antisense_frdA_787_from_start 5 19 + 3.21739 0.00444 0.421 GAGGTCGTAATCCTG Rv0022c_nonpal_1 sense_Rv0674_10_to_stop 2 16 - 1.90411 0.00444 0.211 GGAGTTGAGTTGCAT Rv3249c_nonpal_2 sense_Rv1278_1158_to_stop 18 32 - 2.56 0.00444 0.542 GTCAGCGACCTCTCC Rv2642_nonpal_1 sense_mptA_23_from_start 8 32 + -4.17442 0.00444 0.254 GAGCCATGCTCCAGCGGTTGATTTG Rv2642_nonpal_1 37_up_of_Rv2172c 8 32 + -4.17442 0.00444 0.254 GAGCCATGCTCCAGCGGTTGATTTG Rv3124_nonpal_1 10_up_of_Rv1866 14 40 - -16.3846 0.00444 0.555 CGTGTCACCATATCGGTGCCTCCAGCA Rv0653c_nonpal_1 antisense_metA_391_from_start 19 37 + -0.405063 0.00445 0.18 GTATCGAGATCAGCGGAAA Rv0653c_nonpal_1 sense_metA_384_from_start 11 29 - -0.405063 0.00445 0.18 GTATCGAGATCAGCGGAAA Rv0653c_pal_1 sense_fadE7_118_to_stop 2 25 + 1.68354 0.00445 0.129 GGCAACGGGATATCGCTGGAGTAC Rv0653c_pal_1 antisense_fadE7_121_to_stop 13 36 + 1.68354 0.00445 0.129 GTACTCCAGCGATATCCCGTTGCC Rv0653c_pal_1 sense_fadE7_118_to_stop 2 25 - 1.68354 0.00445 0.129 GTACTCCAGCGATATCCCGTTGCC Rv0653c_pal_1 antisense_fadE7_121_to_stop 13 36 - 1.68354 0.00445 0.129 GGCAACGGGATATCGCTGGAGTAC Rv0818_pal_1 antisense_aldA_642_from_start 23 38 + 0.875 0.00445 0.14 GTGACGATGTTGACAA Rv0818_pal_1 antisense_aldA_642_from_start 23 38 - 0.875 0.00445 0.14 TTGTCAACATCGTCAC Rv0135c_nonpal_2 antisense_aldA_642_from_start 4 31 - -24.2872 0.00445 0.464 CATCGTCACCTCCAGCAGTCACGCTTTG Rv0602c_nonpal_1 sense_metA_384_from_start 23 34 - 0.178082 0.00445 0.481 GTCACGTATCGA Rv0602c_nonpal_1 antisense_metA_391_from_start 14 25 + 0.178082 0.00445 0.481 GTCACGTATCGA Rv0602c_nonpal_1 sense_Rv0674_10_to_stop 24 35 + 0.178082 0.00445 0.481 GACATGAGTGAT Rv3488_pal_2 sense_metA_384_from_start 6 13 + -7.68605 0.00445 0.451 CAAGATTT Rv3488_pal_2 sense_metA_384_from_start 6 13 - -7.68605 0.00445 0.451 AAATCTTG Rv1255c_pal_1 antisense_Rv1461_472_from_start 2 27 + 1.26437 0.00445 0.416 TATGACTCCTTGAGCCTCCAGATCCT Rv1255c_pal_1 sense_Rv1461_475_from_start 11 36 + 1.26437 0.00445 0.416 AGGATCTGGAGGCTCAAGGAGTCATA Rv1255c_pal_1 antisense_Rv1461_472_from_start 2 27 - 1.26437 0.00445 0.416 AGGATCTGGAGGCTCAAGGAGTCATA Rv1255c_pal_1 sense_Rv1461_475_from_start 11 36 - 1.26437 0.00445 0.416 TATGACTCCTTGAGCCTCCAGATCCT Rv1556_nonpal_1 sense_rocA_797_to_stop 23 39 + -6.24468 0.00446 0.702 AATATCGGCCGCTACCA Rv1556_nonpal_1 antisense_rocA_790_to_stop 9 25 - -6.24468 0.00446 0.702 AATATCGGCCGCTACCA Rv3830c_nonpal_1 sense_PE_PGRS57_112_from_start 10 24 + 1.06757 0.00446 0.821 GCGACCACGCAGGTG Rv3830c_nonpal_1 sense_PE_PGRS54_112_from_start 10 24 + 1.06757 0.00446 0.821 GCGACCACGCAGGTG Rv3855_nonpal_1 antisense_frdA_787_from_start 1 26 - -15.75 0.00446 1 CTACCTCCAGGATTACGACCTCGGCA Rv1049_nonpal_2 antisense_Rv2279_293_to_stop 5 19 - 1.25333 0.00446 0.409 ACACATCGATCCGGT Rv0047c_nonpal_2 antisense_Rv1461_416_from_start 9 36 + -38.2991 0.00446 0.28 TGCGGCTACTCCAGCTACTAATCTCTGC Rv3488_nonpal_1 antisense_frdA_787_from_start 4 17 + -3.57353 0.00446 0.313 CGAGGTCGTAATCC Rv2788_pal_2 antisense_Rv1461_559_from_start 5 25 + -2.5625 0.00447 0.612 ATTATCGCCGGCAGGGATTAC Rv2788_pal_2 antisense_Rv1461_559_from_start 5 25 - -2.5625 0.00447 0.612 GTAATCCCTGCCGGCGATAAT Rv3133c_nonpal_1 antisense_PPE24_1570_to_stop 3 17 + 3.85507 0.00448 0.447 GTAGACTAAAGCCAC Rv3133c_nonpal_1 antisense_PPE24_1345_to_stop 3 17 + 3.85507 0.00448 0.447 GTAGACTAAAGCCAC Rv3133c_nonpal_1 antisense_PPE24_1270_to_stop 3 17 + 3.85507 0.00448 0.447 GTAGACTAAAGCCAC Rv3849_nonpal_1 sense_PE_PGRS57_112_from_start 17 28 + -1.21918 0.00448 0.549 CGCAGGTGCTGG Rv3849_nonpal_1 sense_PE_PGRS54_112_from_start 17 28 + -1.21918 0.00448 0.549 CGCAGGTGCTGG Rv3849_pal_1 antisense_Rv1461_416_from_start 10 17 + 5.09091 0.00448 1 GCGGCTAC Rv3849_pal_1 antisense_Rv1461_416_from_start 10 17 - 5.09091 0.00448 1 GTAGCCGC Rv1956_nonpal_1 sense_metA_384_from_start 9 29 + -0.802326 0.00448 0.286 GATTTCCGCTGATCTCGATAC Rv1956_nonpal_1 antisense_metA_391_from_start 19 39 - -0.802326 0.00448 0.286 GATTTCCGCTGATCTCGATAC Rv1719_pal_1 antisense_metA_391_from_start 13 27 + 3.9125 0.00448 1 GGTCACGTATCGAGA Rv1719_pal_1 sense_metA_384_from_start 21 35 + 3.9125 0.00448 1 TCTCGATACGTGACC Rv1719_pal_1 antisense_metA_391_from_start 13 27 - 3.9125 0.00448 1 TCTCGATACGTGACC Rv1719_pal_1 sense_metA_384_from_start 21 35 - 3.9125 0.00448 1 GGTCACGTATCGAGA Rv2359_pal_1 antisense_pyrC_541_to_stop 7 27 + -14.2762 0.00448 0.143 TGACCTCGGCGGTGATCGAAA Rv2359_pal_1 antisense_pyrC_541_to_stop 7 27 - -14.2762 0.00448 0.143 TTTCGATCACCGCCGAGGTCA Rv2021c_nonpal_1 antisense_rocA_790_to_stop 4 24 + 0.301205 0.00449 0.428 AGCTATGGTAGCGGCCGATAT Rv0047c_pal_1 sense_pks6_424_from_start 5 16 + 4.30303 0.0045 0.345 GTGCGATAACAG Rv0047c_pal_1 sense_pks6_423_from_start 5 16 + 4.30303 0.0045 0.345 GTGCGATAACAG Rv0047c_pal_1 sense_pks6_424_from_start 5 16 - 4.30303 0.0045 0.345 CTGTTATCGCAC Rv0047c_pal_1 sense_pks6_423_from_start 5 16 - 4.30303 0.0045 0.345 CTGTTATCGCAC Rv0880_nonpal_1 antisense_accA1_595_from_start 5 28 + -8.25263 0.0045 0.189 AACACAAACCGCTCCAGGAATAGC Rv0880_nonpal_1 sense_pyrC_548_to_stop 16 39 + -8.25263 0.0045 0.189 GGGTATTTCGATCACCGCCGAGGT Rv0880_nonpal_1 antisense_pyrC_541_to_stop 9 32 - -8.25263 0.0045 0.189 GGGTATTTCGATCACCGCCGAGGT Rv0880_nonpal_1 sense_accA1_598_from_start 10 33 - -8.25263 0.0045 0.189 AACACAAACCGCTCCAGGAATAGC Rv0472c_nonpal_1 880_up_of_treZ 1 11 - -3.65385 0.0045 0.247 TTTCAGTTCTT Rv0472c_nonpal_1 antisense_treZ_470_to_stop 1 11 - -3.65385 0.0045 0.247 TTTCAGTTCTT Rv0472c_nonpal_1 antisense_treY_785_to_stop 1 11 - -3.65385 0.0045 0.247 TTTCAGTTCTT Rv0472c_nonpal_1 sense_Rv0674_10_to_stop 26 36 + -3.65385 0.0045 0.247 CATGAGTGATC Rv0472c_nonpal_1 sense_treZ_467_to_stop 27 37 + -3.65385 0.0045 0.247 TTTCAGTTCTT Rv0472c_nonpal_1 877_up_of_treZ 27 37 + -3.65385 0.0045 0.247 TTTCAGTTCTT Rv1994c_pal_1 7_up_of_Rv1049 9 23 + 3.27027 0.0045 0.118 GCCCATTACTCCAGA Rv1994c_pal_1 4_up_of_Rv1049 15 29 + 3.27027 0.0045 0.118 TCTGGAGTAATGGGC Rv1994c_pal_1 7_up_of_Rv1049 9 23 - 3.27027 0.0045 0.118 TCTGGAGTAATGGGC Rv1994c_pal_1 4_up_of_Rv1049 15 29 - 3.27027 0.0045 0.118 GCCCATTACTCCAGA Rv1353c_nonpal_1 antisense_frdA_787_from_start 25 39 - 4.24242 0.00452 0.234 AAGACGGCTACCGCT Rv3488_nonpal_1 sense_mmpL4_1184_to_stop 27 40 + -3.63235 0.00452 0.313 ATTCGAAGCTATTT Rv0022c_nonpal_1 sense_Rv2038c_183_from_start 18 32 + 1.83562 0.00453 0.211 CGTATCCGGATCGGC Rv2989_pal_1 sense_gca_460_from_start 13 29 + -1.66234 0.00453 0.763 CTGGCGTATCAATATCA Rv2989_pal_1 antisense_gca_467_from_start 19 35 + -1.66234 0.00453 0.763 TGATATTGATACGCCAG Rv2989_pal_1 sense_gca_460_from_start 13 29 - -1.66234 0.00453 0.763 TGATATTGATACGCCAG Rv2989_pal_1 antisense_gca_467_from_start 19 35 - -1.66234 0.00453 0.763 CTGGCGTATCAATATCA Rv0967_nonpal_2 antisense_Rv3282_217_to_stop 19 39 - -16.8936 0.00453 1 CACCTTCGGCCTCCGATCTGG Rv0967_nonpal_2 447_down_of_accE5 19 39 - -16.8936 0.00453 1 CACCTTCGGCCTCCGATCTGG Rv1219c_nonpal_1 3360_up_of_Rv3179 11 25 + 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 10041_up_of_Rv3188 11 25 + 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 8506_up_of_Rv3186 11 25 + 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 4999_down_of_Rv3180c 11 25 + 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 13078_down_of_Rv3190c 11 25 + 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 3353_up_of_Rv3179 23 37 - 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 4992_down_of_Rv3180c 23 37 - 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 10034_up_of_Rv3188 23 37 - 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 8499_up_of_Rv3186 23 37 - 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv1219c_nonpal_1 13071_down_of_Rv3190c 23 37 - 0.151899 0.00453 0.599 GCACAAAGTACACCA Rv0653c_pal_1 9767_down_of_Rv3190c 6 29 + 1.63291 0.00453 0.129 TGTCGGTTATAAGTACACCGATCA Rv0653c_pal_1 1688_down_of_Rv3180c 6 29 + 1.63291 0.00453 0.129 TGTCGGTTATAAGTACACCGATCA Rv0653c_pal_1 49_up_of_Rv3179 6 29 + 1.63291 0.00453 0.129 TGTCGGTTATAAGTACACCGATCA Rv0653c_pal_1 6730_up_of_Rv3188 6 29 + 1.63291 0.00453 0.129 TGTCGGTTATAAGTACACCGATCA Rv0653c_pal_1 5195_up_of_Rv3186 6 29 + 1.63291 0.00453 0.129 TGTCGGTTATAAGTACACCGATCA Rv0653c_pal_1 9767_down_of_Rv3190c 6 29 - 1.63291 0.00453 0.129 TGATCGGTGTACTTATAACCGACA Rv0653c_pal_1 1688_down_of_Rv3180c 6 29 - 1.63291 0.00453 0.129 TGATCGGTGTACTTATAACCGACA Rv0653c_pal_1 49_up_of_Rv3179 6 29 - 1.63291 0.00453 0.129 TGATCGGTGTACTTATAACCGACA Rv0653c_pal_1 6730_up_of_Rv3188 6 29 - 1.63291 0.00453 0.129 TGATCGGTGTACTTATAACCGACA Rv0653c_pal_1 5195_up_of_Rv3186 6 29 - 1.63291 0.00453 0.129 TGATCGGTGTACTTATAACCGACA Rv3574_pal_1 antisense_metA_391_from_start 4 19 + 2.63768 0.00453 0.289 CCTGCACCTGGTCACG Rv3574_pal_1 antisense_cobK_311_from_start 16 31 + 2.63768 0.00453 0.289 CGGTACCGGGATCCCA Rv3574_pal_1 sense_cobK_304_from_start 17 32 + 2.63768 0.00453 0.289 TGGGATCCCGGTACCG Rv3574_pal_1 antisense_metA_391_from_start 4 19 - 2.63768 0.00453 0.289 CGTGACCAGGTGCAGG Rv3574_pal_1 antisense_cobK_311_from_start 16 31 - 2.63768 0.00453 0.289 TGGGATCCCGGTACCG Rv3574_pal_1 sense_cobK_304_from_start 17 32 - 2.63768 0.00453 0.289 CGGTACCGGGATCCCA Rv3736_nonpal_1 antisense_frdA_787_from_start 2 16 - 3.55072 0.00454 0.626 GATTACGACCTCGGC Rv1255c_pal_1 antisense_Rv1251c_1309_from_start 5 30 + 1.2069 0.00454 0.416 AGGTACAGCGGCTCCAGCGCCTTCAA Rv1255c_pal_1 antisense_Rv1251c_1309_from_start 5 30 - 1.2069 0.00454 0.416 TTGAAGGCGCTGGAGCCGCTGTACCT Rv0022c_nonpal_1 antisense_Rv2963_530_to_stop 13 27 + 1.82192 0.00454 0.211 CCAGAACGATTCGGG Rv0022c_nonpal_1 sense_Rv2963_537_to_stop 21 35 - 1.82192 0.00454 0.211 CCAGAACGATTCGGG Rv0967_nonpal_1 antisense_Rv2963_530_to_stop 13 33 + 4.34426 0.00455 1 CCAGAACGATTCGGGTACCCA Rv0967_nonpal_1 sense_Rv2963_537_to_stop 15 35 - 4.34426 0.00455 1 CCAGAACGATTCGGGTACCCA Rv0275c_nonpal_1 sense_PPE24_1577_to_stop 3 28 + -13.75 0.00456 0.184 CTGACGATACCCGCGGGTATCACAAT Rv0275c_nonpal_1 sense_PPE24_1352_to_stop 3 28 + -13.75 0.00456 0.184 CTGACGATACCCGCGGGTATCACAAT Rv0275c_nonpal_1 sense_PPE24_1277_to_stop 3 28 + -13.75 0.00456 0.184 CTGACGATACCCGCGGGTATCACAAT Rv1846c_nonpal_1 sense_Rv1461_552_from_start 18 39 - -14.4787 0.00456 0.329 TCGCCGGCAGGGATTACTGTAC Rv1846c_nonpal_1 antisense_Rv1461_559_from_start 9 30 + -14.4787 0.00456 0.329 TCGCCGGCAGGGATTACTGTAC Rv1674c_pal_1 antisense_pks6_431_from_start 4 25 + -0.0104167 0.00456 0.103 GCATTCGTGAACCCACGATCTG Rv1674c_pal_1 antisense_pks6_430_from_start 4 25 + -0.0104167 0.00456 0.103 GCATTCGTGAACCCACGATCTG Rv1674c_pal_1 antisense_pks6_431_from_start 4 25 - -0.0104167 0.00456 0.103 CAGATCGTGGGTTCACGAATGC Rv1674c_pal_1 antisense_pks6_430_from_start 4 25 - -0.0104167 0.00456 0.103 CAGATCGTGGGTTCACGAATGC Rv0576_nonpal_1 antisense_metA_391_from_start 2 27 + 0.0227273 0.00457 0.132 CGCCTGCACCTGGTCACGTATCGAGA Rv3488_nonpal_1 antisense_rocA_790_to_stop 9 22 - -3.67647 0.00457 0.313 ATCGGCCGCTACCA Rv3488_nonpal_1 sense_rocA_797_to_stop 26 39 + -3.67647 0.00457 0.313 ATCGGCCGCTACCA Rv2788_pal_2 10_up_of_Rv1866 12 32 + -2.64583 0.00457 0.612 TCTGCTGGAGGCACCGATATG Rv2788_pal_2 10_up_of_Rv1866 12 32 - -2.64583 0.00457 0.612 CATATCGGTGCCTCCAGCAGA Rv1556_nonpal_1 sense_cobK_304_from_start 16 32 + -6.3617 0.00458 0.702 GTGGGATCCCGGTACCG Rv1556_nonpal_1 antisense_cobK_311_from_start 16 32 - -6.3617 0.00458 0.702 GTGGGATCCCGGTACCG Rv3249c_pal_1 antisense_Rv2279_293_to_stop 7 18 + 4.55385 0.00458 0.329 CGGATCGATGTG Rv3249c_pal_1 antisense_Rv2279_293_to_stop 7 18 - 4.55385 0.00458 0.329 CACATCGATCCG Rv0302_nonpal_2 antisense_Rv0370c_389_from_start 30 40 - -1.4359 0.00458 1 CGGCACCGCGG Rv0022c_nonpal_1 sense_metA_384_from_start 3 17 - 1.79452 0.00458 0.211 GCGGAAATCTTGAGC Rv3676_nonpal_1 antisense_aldA_642_from_start 20 40 - -12.5385 0.00458 1 CGTTGTCAACATCGTCACCTC Rv0023_pal_1 sense_pks6_424_from_start 8 15 + -2 0.00458 0.474 CGATAACA Rv0023_pal_1 sense_pks6_423_from_start 8 15 + -2 0.00458 0.474 CGATAACA Rv0023_pal_1 sense_pks6_423_from_start 8 15 - -2 0.00458 0.474 TGTTATCG Rv0023_pal_1 sense_pks6_424_from_start 8 15 - -2 0.00458 0.474 TGTTATCG Rv0023_pal_1 antisense_pks6_430_from_start 33 40 + -2 0.00458 0.474 TGTTATCG Rv0023_pal_1 antisense_pks6_431_from_start 33 40 + -2 0.00458 0.474 TGTTATCG Rv0023_pal_1 antisense_pks6_431_from_start 33 40 - -2 0.00458 0.474 CGATAACA Rv0023_pal_1 antisense_pks6_430_from_start 33 40 - -2 0.00458 0.474 CGATAACA Rv2359_pal_1 93_up_of_lpqG 9 29 + -14.381 0.00458 0.143 TAGGGCCCGTCGATGCCAGTA Rv2359_pal_1 93_up_of_lpqG 9 29 - -14.381 0.00458 0.143 TACTGGCATCGACGGGCCCTA Rv3488_pal_1 5195_up_of_Rv3186 3 10 + -1.23529 0.00459 0.311 CAGTGTCG Rv3488_pal_1 1688_down_of_Rv3180c 3 10 + -1.23529 0.00459 0.311 CAGTGTCG Rv3488_pal_1 9767_down_of_Rv3190c 3 10 + -1.23529 0.00459 0.311 CAGTGTCG Rv3488_pal_1 49_up_of_Rv3179 3 10 + -1.23529 0.00459 0.311 CAGTGTCG Rv3488_pal_1 6730_up_of_Rv3188 3 10 + -1.23529 0.00459 0.311 CAGTGTCG Rv3488_pal_1 1688_down_of_Rv3180c 3 10 - -1.23529 0.00459 0.311 CGACACTG Rv3488_pal_1 5195_up_of_Rv3186 3 10 - -1.23529 0.00459 0.311 CGACACTG Rv3488_pal_1 9767_down_of_Rv3190c 3 10 - -1.23529 0.00459 0.311 CGACACTG Rv3488_pal_1 49_up_of_Rv3179 3 10 - -1.23529 0.00459 0.311 CGACACTG Rv3488_pal_1 6730_up_of_Rv3188 3 10 - -1.23529 0.00459 0.311 CGACACTG Rv0967_nonpal_1 antisense_fadE7_121_to_stop 18 38 + 4.32787 0.00459 1 CCAGCGATATCCCGTTGCCGC Rv1219c_nonpal_2 antisense_cobK_311_from_start 2 29 - -43.094 0.00459 0.491 GGATCCCGGTACCGCCATCATCGCGGTA Rv0135c_nonpal_2 antisense_rocA_790_to_stop 4 31 + -24.4681 0.00459 0.464 AGCTATGGTAGCGGCCGATATTGGTACC Rv0324_nonpal_1 sense_Rv0674_10_to_stop 29 36 + -2.73529 0.00459 0.348 GAGTGATC Rv0339c_nonpal_2 sense_rocA_797_to_stop 20 40 + -12.1731 0.0046 0.72 ACCAATATCGGCCGCTACCAT Rv0339c_nonpal_2 antisense_rocA_790_to_stop 8 28 - -12.1731 0.0046 0.72 ACCAATATCGGCCGCTACCAT Rv2009_pal_1 antisense_pyrC_541_to_stop 3 31 + 0.50365 0.0046 0.142 GGGGTGACCTCGGCGGTGATCGAAATACC Rv2009_pal_1 antisense_pyrC_541_to_stop 3 31 - 0.50365 0.0046 0.142 GGTATTTCGATCACCGCCGAGGTCACCCC Rv0576_nonpal_1 antisense_Rv1461_416_from_start 14 39 - 0 0.0046 0.132 GAAGCAGAGATTAGTAGCTGGAGTAG Rv3574_nonpal_1 sense_metA_384_from_start 17 31 + -0.338235 0.0046 0.255 CTGATCTCGATACGT Rv3574_nonpal_1 antisense_metA_391_from_start 17 31 - -0.338235 0.0046 0.255 CTGATCTCGATACGT Rv0275c_nonpal_1 antisense_mmpL4_1187_to_stop 8 33 + -13.7981 0.0046 0.184 GAATTGGTCTCCAGAAATCATCAAAA Rv0275c_nonpal_1 sense_mmpL4_1184_to_stop 5 30 - -13.7981 0.0046 0.184 GAATTGGTCTCCAGAAATCATCAAAA Rv2011c_nonpal_1 93_up_of_lpqG 8 26 + 4 0.0046 0.704 GTAGGGCCCGTCGATGCCA Rv1049_nonpal_2 antisense_Rv0370c_389_from_start 1 15 + 1.13333 0.0046 0.414 CATCGATGAGCAGCA Rv1219c_pal_1 sense_Rv1278_1158_to_stop 26 34 + 2.64557 0.0046 0.313 CGCTGACCT Rv1219c_pal_1 sense_Rv1278_1158_to_stop 26 34 - 2.64557 0.0046 0.313 AGGTCAGCG Rv0494_nonpal_1 antisense_fadE7_121_to_stop 2 21 + -2.30864 0.00461 1 CGGATGACCGGGTACTCCAG Rv0494_nonpal_1 sense_fadE7_118_to_stop 17 36 - -2.30864 0.00461 1 CGGATGACCGGGTACTCCAG Rv0135c_pal_1 447_down_of_accE5 8 17 + 3.625 0.00461 0.278 CAGGTAAGCC Rv0135c_pal_1 antisense_Rv3282_217_to_stop 8 17 + 3.625 0.00461 0.278 CAGGTAAGCC Rv0135c_pal_1 447_down_of_accE5 8 17 - 3.625 0.00461 0.278 GGCTTACCTG Rv0135c_pal_1 antisense_Rv3282_217_to_stop 8 17 - 3.625 0.00461 0.278 GGCTTACCTG Rv3488_nonpal_1 antisense_cobK_311_from_start 16 29 - -3.72059 0.00461 0.313 GGATCCCGGTACCG Rv3488_nonpal_1 sense_cobK_304_from_start 19 32 + -3.72059 0.00461 0.313 GGATCCCGGTACCG Rv1404_pal_1 3353_up_of_Rv3179 13 25 + 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 8499_up_of_Rv3186 13 25 + 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 10034_up_of_Rv3188 13 25 + 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 13071_down_of_Rv3190c 13 25 + 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 4992_down_of_Rv3180c 13 25 + 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 8506_up_of_Rv3186 23 35 + 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 4999_down_of_Rv3180c 23 35 + 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 13078_down_of_Rv3190c 23 35 + 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 10041_up_of_Rv3188 23 35 + 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 3360_up_of_Rv3179 23 35 + 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 8499_up_of_Rv3186 13 25 - 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 4992_down_of_Rv3180c 13 25 - 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 3353_up_of_Rv3179 13 25 - 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 13071_down_of_Rv3190c 13 25 - 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 10034_up_of_Rv3188 13 25 - 3.825 0.00461 0.186 CCAATCGGTTTAC Rv1404_pal_1 8506_up_of_Rv3186 23 35 - 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 10041_up_of_Rv3188 23 35 - 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 4999_down_of_Rv3180c 23 35 - 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 13078_down_of_Rv3190c 23 35 - 3.825 0.00461 0.186 GTAAACCGATTGG Rv1404_pal_1 3360_up_of_Rv3179 23 35 - 3.825 0.00461 0.186 GTAAACCGATTGG Rv0135c_pal_1 antisense_Rv2279_293_to_stop 15 24 + 3.60938 0.00462 0.278 TGTGTACTGA Rv0135c_pal_1 sense_Rv2279_300_to_stop 24 33 + 3.60938 0.00462 0.278 TCAGTACACA Rv0135c_pal_1 antisense_Rv2279_293_to_stop 15 24 - 3.60938 0.00462 0.278 TCAGTACACA Rv0135c_pal_1 sense_Rv2279_300_to_stop 24 33 - 3.60938 0.00462 0.278 TGTGTACTGA Rv1404_nonpal_1 37_up_of_Rv2172c 2 27 - 0.1625 0.00462 0.0916 CAACCGCTGGAGCATGGCTCGGAGTA Rv1404_nonpal_1 sense_mptA_23_from_start 2 27 - 0.1625 0.00462 0.0916 CAACCGCTGGAGCATGGCTCGGAGTA Rv2359_pal_1 antisense_pyrC_541_to_stop 4 24 + -14.419 0.00462 0.143 GGGTGACCTCGGCGGTGATCG Rv2359_pal_1 antisense_pyrC_541_to_stop 4 24 - -14.419 0.00462 0.143 CGATCACCGCCGAGGTCACCC Rv3133c_nonpal_1 sense_pyrC_548_to_stop 15 29 + 3.78261 0.00462 0.447 AGGGTATTTCGATCA Rv3133c_nonpal_1 antisense_pyrC_541_to_stop 19 33 - 3.78261 0.00462 0.447 AGGGTATTTCGATCA Rv0135c_nonpal_2 10_up_of_Rv1866 3 30 - -24.5106 0.00462 0.464 TATCGGTGCCTCCAGCAGAACAGCCGTC Rv3574_nonpal_1 antisense_accA1_595_from_start 2 16 + -0.367647 0.00463 0.255 CGCAACACAAACCGC Rv3574_nonpal_1 sense_accA1_598_from_start 22 36 - -0.367647 0.00463 0.255 CGCAACACAAACCGC Rv0022c_nonpal_1 sense_pks9_325_to_stop 25 39 + 1.75342 0.00463 0.211 GCTATCGGTTTGCCC Rv2324_nonpal_1 antisense_pyrC_541_to_stop 6 24 - 3.97101 0.00463 0.357 CGATCACCGCCGAGGTCAC Rv3574_pal_1 antisense_PPE34_1661_from_start 4 19 + 2.57971 0.00463 0.289 CTGTCACGTAATCTGG Rv3574_pal_1 sense_PPE34_3066_to_stop 19 34 + 2.57971 0.00463 0.289 CCAGATTACGTGACAG Rv3574_pal_1 sense_PPE34_1439_from_start 19 34 + 2.57971 0.00463 0.289 CCAGATTACGTGACAG Rv3574_pal_1 antisense_PPE34_1661_from_start 4 19 - 2.57971 0.00463 0.289 CCAGATTACGTGACAG Rv3574_pal_1 sense_PPE34_1664_from_start 19 34 + 2.57971 0.00463 0.289 CCAGATTACGTGACAG Rv3574_pal_1 sense_PPE34_1664_from_start 19 34 - 2.57971 0.00463 0.289 CTGTCACGTAATCTGG Rv3574_pal_1 sense_PPE34_1439_from_start 19 34 - 2.57971 0.00463 0.289 CTGTCACGTAATCTGG Rv3574_pal_1 sense_PPE34_3066_to_stop 19 34 - 2.57971 0.00463 0.289 CTGTCACGTAATCTGG Rv0494_nonpal_2 sense_mptA_23_from_start 19 33 + -7.4 0.00464 1 CAGCGGTTGATTTGG Rv0494_nonpal_2 37_up_of_Rv2172c 19 33 + -7.4 0.00464 1 CAGCGGTTGATTTGG Rv1404_nonpal_1 antisense_Rv2963_530_to_stop 5 30 + 0.15 0.00464 0.0916 AAGCTCTGCCAGAACGATTCGGGTAC Rv0081_nonpal_1 antisense_cobK_311_from_start 5 19 + -0.626667 0.00464 0.417 CGCGATGATGGCGGT Rv1353c_nonpal_1 sense_PE_PGRS54_112_from_start 22 36 + 4.18182 0.00465 0.235 GTGCTGGCTGCGGGC Rv1353c_nonpal_1 sense_PE_PGRS57_112_from_start 22 36 + 4.18182 0.00465 0.235 GTGCTGGCTGCGGGC Rv0602c_pal_1 1662_up_of_Rv2018 31 38 + -1.24051 0.00465 0.135 TACAAGAT Rv0602c_pal_1 1662_up_of_Rv2018 31 38 - -1.24051 0.00465 0.135 ATCTTGTA Rv0324_nonpal_1 447_down_of_accE5 22 29 - -2.75 0.00465 0.348 CTCCGATC Rv0324_nonpal_1 antisense_Rv3282_217_to_stop 22 29 - -2.75 0.00465 0.348 CTCCGATC Rv3249c_pal_1 sense_rocA_797_to_stop 17 28 + 4.52308 0.00466 0.329 GGTACCAATATC Rv3249c_pal_1 antisense_rocA_790_to_stop 20 31 + 4.52308 0.00466 0.329 GATATTGGTACC Rv3249c_pal_1 sense_rocA_797_to_stop 17 28 - 4.52308 0.00466 0.329 GATATTGGTACC Rv3249c_pal_1 antisense_rocA_790_to_stop 20 31 - 4.52308 0.00466 0.329 GGTACCAATATC Rv1219c_pal_1 antisense_pks6_431_from_start 8 16 + 2.63291 0.00466 0.313 TCGTGAACC Rv1219c_pal_1 antisense_pks6_430_from_start 8 16 + 2.63291 0.00466 0.313 TCGTGAACC Rv1219c_pal_1 antisense_pks6_430_from_start 8 16 - 2.63291 0.00466 0.313 GGTTCACGA Rv1219c_pal_1 antisense_pks6_431_from_start 8 16 - 2.63291 0.00466 0.313 GGTTCACGA Rv1219c_pal_1 sense_pks6_424_from_start 32 40 + 2.63291 0.00466 0.313 GGTTCACGA Rv1219c_pal_1 sense_pks6_423_from_start 32 40 + 2.63291 0.00466 0.313 GGTTCACGA Rv1219c_pal_1 sense_pks6_424_from_start 32 40 - 2.63291 0.00466 0.313 TCGTGAACC Rv1219c_pal_1 sense_pks6_423_from_start 32 40 - 2.63291 0.00466 0.313 TCGTGAACC Rv0678_pal_1 9761_down_of_Rv3190c 2 8 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 6724_up_of_Rv3188 2 8 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 1682_down_of_Rv3180c 2 8 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 43_up_of_Rv3179 2 8 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 5189_up_of_Rv3186 2 8 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 1688_down_of_Rv3180c 8 14 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 1682_down_of_Rv3180c 2 8 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 49_up_of_Rv3179 8 14 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 6730_up_of_Rv3188 8 14 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 6724_up_of_Rv3188 2 8 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 43_up_of_Rv3179 2 8 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 5195_up_of_Rv3186 8 14 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 9767_down_of_Rv3190c 8 14 + -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 5189_up_of_Rv3186 2 8 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 9761_down_of_Rv3190c 2 8 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 49_up_of_Rv3179 8 14 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 6730_up_of_Rv3188 8 14 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 5195_up_of_Rv3186 8 14 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 9767_down_of_Rv3190c 8 14 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 1688_down_of_Rv3180c 8 14 - -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 5188_up_of_Rv3186 34 40 + -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 1681_down_of_Rv3180c 34 40 + -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 6723_up_of_Rv3188 34 40 + -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 42_up_of_Rv3179 34 40 + -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 9760_down_of_Rv3190c 34 40 + -2.45588 0.00466 0.428 TAACCGA Rv0678_pal_1 6723_up_of_Rv3188 34 40 - -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 42_up_of_Rv3179 34 40 - -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 1681_down_of_Rv3180c 34 40 - -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 9760_down_of_Rv3190c 34 40 - -2.45588 0.00466 0.428 TCGGTTA Rv0678_pal_1 5188_up_of_Rv3186 34 40 - -2.45588 0.00466 0.428 TCGGTTA Rv0302_nonpal_1 antisense_Rv0370c_389_from_start 19 33 + 3.10145 0.00466 0.421 GAGGGGTCGGTCCGC Rv2989_nonpal_1 antisense_mmpL4_1187_to_stop 11 31 + -1.34211 0.00467 0.662 TTGGTCTCCAGAAATCATCAA Rv2989_nonpal_1 93_up_of_lpqG 6 26 - -1.34211 0.00467 0.662 TGGCATCGACGGGCCCTACAA Rv2989_nonpal_1 sense_mmpL4_1184_to_stop 7 27 - -1.34211 0.00467 0.662 TTGGTCTCCAGAAATCATCAA Rv2989_nonpal_1 1662_up_of_Rv2018 20 40 - -1.34211 0.00467 0.662 CGATCTTGTATCAATTTCACT Rv1255c_nonpal_1 antisense_fadE7_121_to_stop 14 33 + -3.25287 0.00467 0.442 TACTCCAGCGATATCCCGTT Rv1255c_nonpal_1 sense_fadE7_118_to_stop 5 24 - -3.25287 0.00467 0.442 TACTCCAGCGATATCCCGTT Rv2788_pal_1 antisense_rocA_790_to_stop 6 27 + -2.66667 0.00467 0.3 CTATGGTAGCGGCCGATATTGG Rv2788_pal_1 antisense_rocA_790_to_stop 6 27 - -2.66667 0.00467 0.3 CCAATATCGGCCGCTACCATAG Rv0967_nonpal_2 sense_Rv2038c_183_from_start 9 29 + -17.0638 0.00467 1 GACTGTGGGCGTATCCGGATC Rv0472c_nonpal_1 antisense_Rv2963_530_to_stop 25 35 - -3.75962 0.00467 0.247 CATGGGTACCC Rv0472c_nonpal_1 sense_Rv2963_537_to_stop 13 23 + -3.75962 0.00467 0.247 CATGGGTACCC Rv3736_pal_1 antisense_aldA_642_from_start 18 32 + 4.14286 0.00468 1 TGGAGGTGACGATGT Rv3736_pal_1 antisense_aldA_642_from_start 18 32 - 4.14286 0.00468 1 ACATCGTCACCTCCA Rv1423_nonpal_2 sense_PPE34_1664_from_start 3 22 + -22.0106 0.00468 1 TTTCCCCGGATTCCCTCCAG Rv1423_nonpal_2 sense_PPE34_3066_to_stop 3 22 + -22.0106 0.00468 1 TTTCCCCGGATTCCCTCCAG Rv1423_nonpal_2 sense_PPE34_1439_from_start 3 22 + -22.0106 0.00468 1 TTTCCCCGGATTCCCTCCAG Rv1423_nonpal_2 antisense_PPE34_1661_from_start 16 35 - -22.0106 0.00468 1 TTTCCCCGGATTCCCTCCAG Rv1816_nonpal_1 antisense_pyrC_541_to_stop 17 33 - 3.04615 0.00469 0.295 AGGGTATTTCGATCACC Rv1816_nonpal_1 sense_pyrC_548_to_stop 15 31 + 3.04615 0.00469 0.295 AGGGTATTTCGATCACC Rv1473A_nonpal_2 antisense_Rv1251c_1309_from_start 31 38 + -2.38356 0.00469 0.322 GCTGAACG Rv0691c_nonpal_1 sense_Rv2963_537_to_stop 4 17 + 0.078125 0.00469 0.401 CTATCGCGGCATGG Rv0302_nonpal_1 sense_Rv2963_537_to_stop 22 36 - 3.08696 0.00469 0.421 GCCAGAACGATTCGG Rv0302_nonpal_1 antisense_Rv2963_530_to_stop 12 26 + 3.08696 0.00469 0.421 GCCAGAACGATTCGG Rv2506_pal_1 sense_metA_384_from_start 9 24 + -0.989474 0.00469 0.374 GATTTCCGCTGATCTC Rv2506_pal_1 antisense_metA_391_from_start 24 39 + -0.989474 0.00469 0.374 GAGATCAGCGGAAATC Rv2506_pal_1 sense_metA_384_from_start 9 24 - -0.989474 0.00469 0.374 GAGATCAGCGGAAATC Rv2506_pal_1 antisense_metA_391_from_start 24 39 - -0.989474 0.00469 0.374 GATTTCCGCTGATCTC Rv0691c_pal_1 antisense_frdA_787_from_start 29 40 + 3.3913 0.0047 0.182 GTAGCCGTCTTT Rv0691c_pal_1 antisense_frdA_787_from_start 29 40 - 3.3913 0.0047 0.182 AAAGACGGCTAC Rv0602c_nonpal_1 sense_Rv0674_10_to_stop 15 26 - -0.0684932 0.0047 0.481 GTCACCTCCAGG Rv0602c_nonpal_1 antisense_Rv1251c_1309_from_start 25 36 - -0.0684932 0.0047 0.481 TTCAGCTTGAAG Rv0818_nonpal_1 5189_up_of_Rv3186 1 21 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 9761_down_of_Rv3190c 1 21 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 6724_up_of_Rv3188 1 21 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 43_up_of_Rv3179 1 21 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 1682_down_of_Rv3180c 1 21 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 9767_down_of_Rv3190c 7 27 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 1688_down_of_Rv3180c 7 27 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 49_up_of_Rv3179 7 27 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 6730_up_of_Rv3188 7 27 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv0818_nonpal_1 5195_up_of_Rv3186 7 27 + -5.35106 0.0047 0.454 GTCGGTTATAAGTACACCGAT Rv3574_nonpal_1 sense_treZ_467_to_stop 18 32 + -0.441176 0.0047 0.255 TCCAGCCCGTTTCAG Rv3574_nonpal_1 877_up_of_treZ 18 32 + -0.441176 0.0047 0.255 TCCAGCCCGTTTCAG Rv3574_nonpal_1 antisense_treZ_470_to_stop 6 20 - -0.441176 0.0047 0.255 TCCAGCCCGTTTCAG Rv3574_nonpal_1 antisense_treY_785_to_stop 6 20 - -0.441176 0.0047 0.255 TCCAGCCCGTTTCAG Rv3574_nonpal_1 880_up_of_treZ 6 20 - -0.441176 0.0047 0.255 TCCAGCCCGTTTCAG Rv1994c_pal_1 8506_up_of_Rv3186 10 24 + 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 10041_up_of_Rv3188 10 24 + 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 3360_up_of_Rv3179 10 24 + 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 13078_down_of_Rv3190c 10 24 + 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 4999_down_of_Rv3180c 10 24 + 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 8506_up_of_Rv3186 10 24 - 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 8499_up_of_Rv3186 24 38 + 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 3360_up_of_Rv3179 10 24 - 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 3353_up_of_Rv3179 24 38 + 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 10034_up_of_Rv3188 24 38 + 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 13078_down_of_Rv3190c 10 24 - 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 4999_down_of_Rv3180c 10 24 - 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 10041_up_of_Rv3188 10 24 - 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 4992_down_of_Rv3180c 24 38 + 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 13071_down_of_Rv3190c 24 38 + 3.16216 0.0047 0.118 GGTGTACTTTGTGCT Rv1994c_pal_1 8499_up_of_Rv3186 24 38 - 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 10034_up_of_Rv3188 24 38 - 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 3353_up_of_Rv3179 24 38 - 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 13071_down_of_Rv3190c 24 38 - 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv1994c_pal_1 4992_down_of_Rv3180c 24 38 - 3.16216 0.0047 0.118 AGCACAAAGTACACC Rv0767c_pal_1 sense_pks9_325_to_stop 6 17 + 4.49505 0.00471 0.989 ACGCAATCGTCT Rv0767c_pal_1 sense_pks9_325_to_stop 6 17 - 4.49505 0.00471 0.989 AGACGATTGCGT Rv0678_pal_2 sense_PPE24_1352_to_stop 12 27 + 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0678_pal_2 sense_PPE24_1577_to_stop 12 27 + 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0678_pal_2 sense_PPE24_1277_to_stop 12 27 + 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0678_pal_2 antisense_PPE24_1570_to_stop 21 36 + 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 antisense_PPE24_1345_to_stop 21 36 + 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 antisense_PPE24_1270_to_stop 21 36 + 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 sense_PPE24_1352_to_stop 12 27 - 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 sense_PPE24_1277_to_stop 12 27 - 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 sense_PPE24_1577_to_stop 12 27 - 1.34667 0.00471 0.292 TTGTGATACCCGCGGG Rv0678_pal_2 antisense_PPE24_1570_to_stop 21 36 - 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0678_pal_2 antisense_PPE24_1345_to_stop 21 36 - 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0678_pal_2 antisense_PPE24_1270_to_stop 21 36 - 1.34667 0.00471 0.292 CCCGCGGGTATCACAA Rv0494_nonpal_1 10_up_of_Rv1866 14 33 + -2.39506 0.00471 1 TGCTGGAGGCACCGATATGG Rv3830c_pal_2 5182_up_of_Rv3186 5 13 + 4.20779 0.00471 1 CACGCCGAC Rv3830c_pal_2 1675_down_of_Rv3180c 5 13 + 4.20779 0.00471 1 CACGCCGAC Rv3830c_pal_2 9754_down_of_Rv3190c 5 13 + 4.20779 0.00471 1 CACGCCGAC Rv3830c_pal_2 36_up_of_Rv3179 5 13 + 4.20779 0.00471 1 CACGCCGAC Rv3830c_pal_2 6717_up_of_Rv3188 5 13 + 4.20779 0.00471 1 CACGCCGAC Rv3830c_pal_2 9754_down_of_Rv3190c 5 13 - 4.20779 0.00471 1 GTCGGCGTG Rv3830c_pal_2 36_up_of_Rv3179 5 13 - 4.20779 0.00471 1 GTCGGCGTG Rv3830c_pal_2 6717_up_of_Rv3188 5 13 - 4.20779 0.00471 1 GTCGGCGTG Rv3830c_pal_2 5182_up_of_Rv3186 5 13 - 4.20779 0.00471 1 GTCGGCGTG Rv3830c_pal_2 1675_down_of_Rv3180c 5 13 - 4.20779 0.00471 1 GTCGGCGTG Rv1828_nonpal_1 antisense_frdA_787_from_start 15 38 - -9.60638 0.00472 0.336 AGACGGCTACCGCTACCTCCAGGA Rv3736_nonpal_1 sense_PE_PGRS54_112_from_start 15 29 + 3.46377 0.00472 0.626 CACGCAGGTGCTGGC Rv3736_nonpal_1 sense_PE_PGRS57_112_from_start 15 29 + 3.46377 0.00472 0.626 CACGCAGGTGCTGGC Rv1473A_nonpal_1 sense_bioB_253_to_stop 9 22 + -5.84932 0.00472 0.433 CGCCGACCTGGAGG Rv0465c_pal_1 antisense_aldA_642_from_start 8 35 + -3.90909 0.00472 0.236 GCGTGACTGCTGGAGGTGACGATGTTGA Rv0465c_pal_1 antisense_aldA_642_from_start 8 35 - -3.90909 0.00472 0.236 TCAACATCGTCACCTCCAGCAGTCACGC Rv3557c_nonpal_1 antisense_PPE24_1570_to_stop 11 30 + -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv3557c_nonpal_1 antisense_PPE24_1345_to_stop 11 30 + -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv3557c_nonpal_1 antisense_PPE24_1270_to_stop 11 30 + -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv3557c_nonpal_1 sense_PPE24_1577_to_stop 18 37 - -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv3557c_nonpal_1 sense_PPE24_1352_to_stop 18 37 - -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv3557c_nonpal_1 sense_PPE24_1277_to_stop 18 37 - -16.25 0.00473 0.341 AAGCCACCGATTGTGATACC Rv0602c_pal_1 antisense_PPE34_1661_from_start 11 18 + -1.25316 0.00473 0.135 GTAATCTG Rv0602c_pal_1 antisense_PPE34_1661_from_start 11 18 - -1.25316 0.00473 0.135 CAGATTAC Rv0602c_pal_1 sense_PPE34_1664_from_start 20 27 + -1.25316 0.00473 0.135 CAGATTAC Rv0602c_pal_1 sense_PPE34_1439_from_start 20 27 + -1.25316 0.00473 0.135 CAGATTAC Rv0602c_pal_1 sense_PPE34_3066_to_stop 20 27 + -1.25316 0.00473 0.135 CAGATTAC Rv0602c_pal_1 antisense_Rv1461_416_from_start 26 33 + -1.25316 0.00473 0.135 CTAATCTC Rv0602c_pal_1 sense_PPE34_1439_from_start 20 27 - -1.25316 0.00473 0.135 GTAATCTG Rv0602c_pal_1 sense_PPE34_3066_to_stop 20 27 - -1.25316 0.00473 0.135 GTAATCTG Rv0602c_pal_1 sense_PPE34_1664_from_start 20 27 - -1.25316 0.00473 0.135 GTAATCTG Rv0602c_pal_1 antisense_Rv1461_416_from_start 26 33 - -1.25316 0.00473 0.135 GAGATTAG Rv1353c_pal_1 antisense_accA1_595_from_start 9 19 + 4.9697 0.00473 0.334 CAAACCGCTCC Rv1353c_pal_1 sense_accA1_598_from_start 19 29 + 4.9697 0.00473 0.334 GGAGCGGTTTG Rv1353c_pal_1 antisense_accA1_595_from_start 9 19 - 4.9697 0.00473 0.334 GGAGCGGTTTG Rv1353c_pal_1 sense_accA1_598_from_start 19 29 - 4.9697 0.00473 0.334 CAAACCGCTCC Rv3681c_nonpal_1 antisense_Rv1461_416_from_start 14 33 - -0.962025 0.00473 0.347 GAGATTAGTAGCTGGAGTAG Rv3416_nonpal_1 antisense_cobK_311_from_start 6 30 + -7.68041 0.00474 0.484 GCGATGATGGCGGTACCGGGATCCC Rv0135c_pal_1 sense_gca_460_from_start 15 24 + 3.54688 0.00474 0.278 GGCGTATCAA Rv0135c_pal_1 sense_gca_460_from_start 15 24 - 3.54688 0.00474 0.278 TTGATACGCC Rv0135c_pal_1 antisense_gca_467_from_start 24 33 + 3.54688 0.00474 0.278 TTGATACGCC Rv0135c_pal_1 antisense_gca_467_from_start 24 33 - 3.54688 0.00474 0.278 GGCGTATCAA Rv0880_nonpal_1 antisense_pks6_431_from_start 5 28 - -8.49474 0.00474 0.189 ATCCAGATCGTGGGTTCACGAATG Rv0880_nonpal_1 antisense_pks6_430_from_start 5 28 - -8.49474 0.00474 0.189 ATCCAGATCGTGGGTTCACGAATG Rv0981_nonpal_2 antisense_Rv1461_416_from_start 3 23 + -3.83158 0.00474 0.491 GTATTGTGCGGCTACTCCAGC Rv0981_nonpal_2 93_up_of_lpqG 20 40 - -3.83158 0.00474 0.491 GAATTTCGGGGTACTGGCATC Rv1674c_nonpal_1 sense_Rv2279_300_to_stop 1 18 + -8.41489 0.00474 0.357 ATCCACCATACGGATAGG Rv3736_nonpal_1 sense_accA1_598_from_start 2 16 - 3.44928 0.00475 0.626 GAATAGCGTATCGTC Rv3736_nonpal_1 antisense_accA1_595_from_start 22 36 + 3.44928 0.00475 0.626 GAATAGCGTATCGTC Rv1846c_pal_1 sense_rocA_797_to_stop 4 18 + -2.25263 0.00475 0.239 ATGGCAGTGGGTGGG Rv1846c_pal_1 sense_rocA_797_to_stop 4 18 - -2.25263 0.00475 0.239 CCCACCCACTGCCAT Rv2887_pal_1 sense_Rv1461_475_from_start 4 18 + 1.1625 0.00475 0.382 ATCAGAGAGGATCTG Rv2887_pal_1 sense_Rv1461_475_from_start 4 18 - 1.1625 0.00475 0.382 CAGATCCTCTCTGAT Rv2887_pal_1 antisense_Rv1461_472_from_start 20 34 + 1.1625 0.00475 0.382 CAGATCCTCTCTGAT Rv2887_pal_1 antisense_Rv1461_472_from_start 20 34 - 1.1625 0.00475 0.382 ATCAGAGAGGATCTG Rv3249c_nonpal_2 antisense_Rv2963_530_to_stop 16 30 + 2.33333 0.00475 0.542 GAACGATTCGGGTAC Rv3249c_nonpal_2 sense_Rv2963_537_to_stop 18 32 - 2.33333 0.00475 0.542 GAACGATTCGGGTAC Rv1674c_nonpal_1 93_up_of_lpqG 10 27 - -8.42553 0.00476 0.357 CTGGCATCGACGGGCCCT Rv1990c_pal_1 antisense_PPE24_1570_to_stop 13 27 + 4.38235 0.00476 1 GCCACCGATTGTGAT Rv1990c_pal_1 antisense_PPE24_1345_to_stop 13 27 + 4.38235 0.00476 1 GCCACCGATTGTGAT Rv1990c_pal_1 antisense_PPE24_1270_to_stop 13 27 + 4.38235 0.00476 1 GCCACCGATTGTGAT Rv1990c_pal_1 sense_PPE24_1577_to_stop 21 35 + 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 sense_PPE24_1352_to_stop 21 35 + 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 sense_PPE24_1277_to_stop 21 35 + 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 antisense_PPE24_1570_to_stop 13 27 - 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 antisense_PPE24_1345_to_stop 13 27 - 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 antisense_PPE24_1270_to_stop 13 27 - 4.38235 0.00476 1 ATCACAATCGGTGGC Rv1990c_pal_1 sense_PPE24_1577_to_stop 21 35 - 4.38235 0.00476 1 GCCACCGATTGTGAT Rv1990c_pal_1 sense_PPE24_1352_to_stop 21 35 - 4.38235 0.00476 1 GCCACCGATTGTGAT Rv1990c_pal_1 sense_PPE24_1277_to_stop 21 35 - 4.38235 0.00476 1 GCCACCGATTGTGAT Rv0135c_pal_1 1662_up_of_Rv2018 27 36 + 3.53125 0.00476 0.278 TTGATACAAG Rv0135c_pal_1 1662_up_of_Rv2018 27 36 - 3.53125 0.00476 0.278 CTTGTATCAA Rv2374c_nonpal_1 sense_fadE7_118_to_stop 9 36 - -11.6731 0.00476 0.429 CGGATGACCGGGTACTCCAGCGATATCC Rv2374c_nonpal_1 antisense_fadE7_121_to_stop 2 29 + -11.6731 0.00476 0.429 CGGATGACCGGGTACTCCAGCGATATCC Rv0302_pal_1 sense_accA1_598_from_start 2 13 + 4.33824 0.00476 0.269 GACGATACGCTA Rv0302_pal_1 sense_accA1_598_from_start 2 13 - 4.33824 0.00476 0.269 TAGCGTATCGTC Rv0302_pal_1 antisense_accA1_595_from_start 25 36 + 4.33824 0.00476 0.269 TAGCGTATCGTC Rv0302_pal_1 antisense_accA1_595_from_start 25 36 - 4.33824 0.00476 0.269 GACGATACGCTA Rv3557c_nonpal_1 sense_Rv1461_552_from_start 1 20 + -16.2981 0.00477 0.341 TTTCAAGGAATATTTCGGTA Rv2887_pal_1 1688_down_of_Rv3180c 1 15 + 1.15 0.00477 0.382 TACAGTGTCGGTTAT Rv2887_pal_1 5195_up_of_Rv3186 1 15 + 1.15 0.00477 0.382 TACAGTGTCGGTTAT Rv2887_pal_1 6730_up_of_Rv3188 1 15 + 1.15 0.00477 0.382 TACAGTGTCGGTTAT Rv2887_pal_1 9767_down_of_Rv3190c 1 15 + 1.15 0.00477 0.382 TACAGTGTCGGTTAT Rv2887_pal_1 49_up_of_Rv3179 1 15 + 1.15 0.00477 0.382 TACAGTGTCGGTTAT Rv2887_pal_1 6730_up_of_Rv3188 1 15 - 1.15 0.00477 0.382 ATAACCGACACTGTA Rv2887_pal_1 5195_up_of_Rv3186 1 15 - 1.15 0.00477 0.382 ATAACCGACACTGTA Rv2887_pal_1 9767_down_of_Rv3190c 1 15 - 1.15 0.00477 0.382 ATAACCGACACTGTA Rv2887_pal_1 49_up_of_Rv3179 1 15 - 1.15 0.00477 0.382 ATAACCGACACTGTA Rv2887_pal_1 1688_down_of_Rv3180c 1 15 - 1.15 0.00477 0.382 ATAACCGACACTGTA Rv1828_nonpal_1 antisense_aldA_642_from_start 7 30 + -9.65957 0.00477 0.336 AGCGTGACTGCTGGAGGTGACGAT Rv0818_nonpal_1 sense_pks6_424_from_start 9 29 + -5.41489 0.00477 0.454 GATAACAGCGTATCCAGATCG Rv0818_nonpal_1 sense_pks6_423_from_start 9 29 + -5.41489 0.00477 0.454 GATAACAGCGTATCCAGATCG Rv0818_nonpal_1 antisense_pks6_431_from_start 19 39 - -5.41489 0.00477 0.454 GATAACAGCGTATCCAGATCG Rv0818_nonpal_1 antisense_pks6_430_from_start 19 39 - -5.41489 0.00477 0.454 GATAACAGCGTATCCAGATCG Rv0023_nonpal_2 antisense_pks6_431_from_start 10 37 + -38.3846 0.00477 0.387 GTGAACCCACGATCTGGATACGCTGTTA Rv0023_nonpal_2 antisense_pks6_430_from_start 10 37 + -38.3846 0.00477 0.387 GTGAACCCACGATCTGGATACGCTGTTA Rv0023_nonpal_2 sense_pks6_424_from_start 11 38 - -38.3846 0.00477 0.387 GTGAACCCACGATCTGGATACGCTGTTA Rv0023_nonpal_2 sense_pks6_423_from_start 11 38 - -38.3846 0.00477 0.387 GTGAACCCACGATCTGGATACGCTGTTA Rv0757_nonpal_1 antisense_gca_467_from_start 2 22 - -0.291139 0.00477 0.595 ATCACAAGTCTTACGGCATGC Rv1556_nonpal_1 antisense_accA1_595_from_start 22 38 - -6.55319 0.00478 0.702 GGGACGATACGCTATTC Rv0981_nonpal_1 sense_rocA_797_to_stop 9 36 + -17.7736 0.00478 0.434 AGTGGGTGGGTACCAATATCGGCCGCTA Rv0981_nonpal_1 antisense_rocA_790_to_stop 12 39 - -17.7736 0.00478 0.434 AGTGGGTGGGTACCAATATCGGCCGCTA Rv3849_nonpal_1 sense_pks9_325_to_stop 22 33 - -1.56164 0.00478 0.573 ACCGATAGCCAT Rv3488_pal_2 sense_mmpL4_1184_to_stop 2 9 + -7.75581 0.00478 0.451 GGATTTTG Rv3488_pal_2 sense_mmpL4_1184_to_stop 2 9 - -7.75581 0.00478 0.451 CAAAATCC Rv3488_pal_2 1662_up_of_Rv2018 22 29 + -7.75581 0.00478 0.451 TGAAATTG Rv3488_pal_2 antisense_mmpL4_1187_to_stop 29 36 + -7.75581 0.00478 0.451 CAAAATCC Rv3488_pal_2 1662_up_of_Rv2018 22 29 - -7.75581 0.00478 0.451 CAATTTCA Rv3488_pal_2 93_up_of_lpqG 33 40 + -7.75581 0.00478 0.451 CGAAATTC Rv3488_pal_2 antisense_mmpL4_1187_to_stop 29 36 - -7.75581 0.00478 0.451 GGATTTTG Rv3488_pal_2 93_up_of_lpqG 33 40 - -7.75581 0.00478 0.451 GAATTTCG Rv1776c_pal_1 antisense_Rv2279_293_to_stop 8 22 + 2.60976 0.00478 1 GGATCGATGTGTACT Rv1776c_pal_1 antisense_Rv2279_293_to_stop 8 22 - 2.60976 0.00478 1 AGTACACATCGATCC Rv1776c_pal_1 sense_Rv2279_300_to_stop 26 40 + 2.60976 0.00478 1 AGTACACATCGATCC Rv1776c_pal_1 sense_Rv2279_300_to_stop 26 40 - 2.60976 0.00478 1 GGATCGATGTGTACT Rv1990c_nonpal_1 sense_fadE7_118_to_stop 1 11 + 3.90769 0.00479 1 CGGCAACGGGA Rv1990c_nonpal_1 antisense_fadE7_121_to_stop 27 37 - 3.90769 0.00479 1 CGGCAACGGGA Rv0691c_pal_1 antisense_Rv2963_530_to_stop 9 20 + 3.33333 0.00479 0.182 TCTGCCAGAACG Rv0691c_pal_1 antisense_Rv2963_530_to_stop 9 20 - 3.33333 0.00479 0.182 CGTTCTGGCAGA Rv0691c_pal_1 sense_Rv2963_537_to_stop 28 39 + 3.33333 0.00479 0.182 CGTTCTGGCAGA Rv0691c_pal_1 sense_Rv2963_537_to_stop 28 39 - 3.33333 0.00479 0.182 TCTGCCAGAACG Rv3488_pal_2 sense_Rv1461_552_from_start 8 15 + -7.76744 0.00479 0.451 GAATATTT Rv3488_pal_2 sense_Rv1461_552_from_start 8 15 - -7.76744 0.00479 0.451 AAATATTC Rv3488_pal_2 antisense_Rv1461_559_from_start 33 40 + -7.76744 0.00479 0.451 AAATATTC Rv3488_pal_2 antisense_Rv1461_559_from_start 33 40 - -7.76744 0.00479 0.451 GAATATTT Rv0135c_nonpal_1 sense_pks6_424_from_start 6 16 - -0.09375 0.00479 0.467 CTGTTATCGCA Rv0135c_nonpal_1 sense_pks6_423_from_start 6 16 - -0.09375 0.00479 0.467 CTGTTATCGCA Rv2250c_pal_1 antisense_gca_467_from_start 17 23 + -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 sense_PPE24_1577_to_stop 20 26 + -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 sense_PPE24_1352_to_stop 20 26 + -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 sense_PPE24_1277_to_stop 20 26 + -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 antisense_PPE24_1570_to_stop 22 28 + -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 antisense_PPE24_1345_to_stop 22 28 + -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 antisense_PPE24_1270_to_stop 22 28 + -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 antisense_gca_467_from_start 17 23 - -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 sense_gca_460_from_start 25 31 + -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 sense_PPE24_1577_to_stop 20 26 - -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 sense_PPE24_1352_to_stop 20 26 - -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 sense_PPE24_1277_to_stop 20 26 - -2.83824 0.0048 0.497 TGTGATA Rv2250c_pal_1 antisense_PPE24_1345_to_stop 22 28 - -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 antisense_PPE24_1570_to_stop 22 28 - -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 antisense_PPE24_1270_to_stop 22 28 - -2.83824 0.0048 0.497 TATCACA Rv2250c_pal_1 sense_gca_460_from_start 25 31 - -2.83824 0.0048 0.497 TGTGATA Rv0081_nonpal_1 sense_pks9_325_to_stop 5 19 - -0.76 0.00481 0.417 GGAGACGATTGCGTA Rv3736_nonpal_1 antisense_aldA_642_from_start 13 27 + 3.42029 0.00481 0.626 ACTGCTGGAGGTGAC Rv1255c_nonpal_1 sense_bioB_253_to_stop 10 29 - -3.37931 0.00481 0.442 GGCATTACCTCCAGGTCGGC Rv0022c_nonpal_1 antisense_Rv1461_559_from_start 18 32 + 1.61644 0.00481 0.211 GGGATTACTGTACCG Rv0022c_nonpal_1 sense_Rv1461_552_from_start 16 30 - 1.61644 0.00481 0.211 GGGATTACTGTACCG Rv0135c_nonpal_2 sense_Rv0674_10_to_stop 2 29 - -24.7447 0.00481 0.464 CATGTCACCTCCAGGAGTTGAGTTGCAT Rv3488_pal_1 sense_metA_384_from_start 18 25 + -1.39706 0.00482 0.311 TGATCTCG Rv3488_pal_1 antisense_metA_391_from_start 23 30 + -1.39706 0.00482 0.311 CGAGATCA Rv3488_pal_1 sense_metA_384_from_start 18 25 - -1.39706 0.00482 0.311 CGAGATCA Rv3488_pal_1 antisense_metA_391_from_start 23 30 - -1.39706 0.00482 0.311 TGATCTCG Rv0494_pal_1 sense_accA1_598_from_start 1 17 + 2.92143 0.00482 1 GGACGATACGCTATTCC Rv0494_pal_1 sense_accA1_598_from_start 1 17 - 2.92143 0.00482 1 GGAATAGCGTATCGTCC Rv0494_pal_1 antisense_accA1_595_from_start 21 37 + 2.92143 0.00482 1 GGAATAGCGTATCGTCC Rv0494_pal_1 antisense_accA1_595_from_start 21 37 - 2.92143 0.00482 1 GGACGATACGCTATTCC Rv1816_pal_1 antisense_Rv3282_217_to_stop 21 33 + 4.31724 0.00482 0.19 AGATCGGAGGCCG Rv1816_pal_1 447_down_of_accE5 21 33 + 4.31724 0.00482 0.19 AGATCGGAGGCCG Rv1816_pal_1 antisense_Rv3282_217_to_stop 21 33 - 4.31724 0.00482 0.19 CGGCCTCCGATCT Rv1816_pal_1 447_down_of_accE5 21 33 - 4.31724 0.00482 0.19 CGGCCTCCGATCT Rv0275c_nonpal_1 antisense_PPE24_1270_to_stop 4 29 + -14.0385 0.00483 0.184 TAGACTAAAGCCACCGATTGTGATAC Rv0275c_nonpal_1 antisense_PPE24_1570_to_stop 4 29 + -14.0385 0.00483 0.184 TAGACTAAAGCCACCGATTGTGATAC Rv0275c_nonpal_1 antisense_PPE24_1345_to_stop 4 29 + -14.0385 0.00483 0.184 TAGACTAAAGCCACCGATTGTGATAC Rv0023_nonpal_1 sense_metA_384_from_start 1 21 + 3.30986 0.00483 0.154 GGGCTCAAGATTTCCGCTGAT Rv0022c_nonpal_1 sense_metA_384_from_start 17 31 + 1.60274 0.00483 0.211 CTGATCTCGATACGT Rv0022c_nonpal_1 antisense_metA_391_from_start 17 31 - 1.60274 0.00483 0.211 CTGATCTCGATACGT Rv1473A_nonpal_1 sense_mmpL4_1184_to_stop 6 19 - -5.9589 0.00483 0.433 CAGAAATCATCAAA Rv1473A_nonpal_1 antisense_mmpL4_1187_to_stop 19 32 + -5.9589 0.00483 0.433 CAGAAATCATCAAA Rv3765c_nonpal_1 antisense_pks6_431_from_start 5 24 - -9.03158 0.00483 0.532 AGATCGTGGGTTCACGAATG Rv3765c_nonpal_1 antisense_pks6_430_from_start 5 24 - -9.03158 0.00483 0.532 AGATCGTGGGTTCACGAATG Rv0602c_pal_1 sense_mmpL4_1184_to_stop 4 11 + -1.39241 0.00484 0.135 ATTTTGAT Rv0602c_pal_1 sense_mmpL4_1184_to_stop 4 11 - -1.39241 0.00484 0.135 ATCAAAAT Rv0602c_pal_1 9760_down_of_Rv3190c 15 22 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 6723_up_of_Rv3188 15 22 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 42_up_of_Rv3179 15 22 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 5188_up_of_Rv3186 15 22 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 1681_down_of_Rv3180c 15 22 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 1682_down_of_Rv3180c 20 27 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 9761_down_of_Rv3190c 20 27 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 6724_up_of_Rv3188 20 27 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 sense_gca_460_from_start 20 27 + -1.39241 0.00484 0.135 ATCAATAT Rv0602c_pal_1 5189_up_of_Rv3186 20 27 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 43_up_of_Rv3179 20 27 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 antisense_PPE24_1570_to_stop 20 27 + -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 antisense_PPE24_1345_to_stop 20 27 + -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 antisense_PPE24_1270_to_stop 20 27 + -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 antisense_gca_467_from_start 21 28 + -1.39241 0.00484 0.135 ATATTGAT Rv0602c_pal_1 9754_down_of_Rv3190c 21 28 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 sense_PPE24_1352_to_stop 21 28 + -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 sense_PPE24_1277_to_stop 21 28 + -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 36_up_of_Rv3179 21 28 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 1675_down_of_Rv3180c 21 28 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 6717_up_of_Rv3188 21 28 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 sense_PPE24_1577_to_stop 21 28 + -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 5182_up_of_Rv3186 21 28 + -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 9760_down_of_Rv3190c 15 22 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 1681_down_of_Rv3180c 15 22 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 42_up_of_Rv3179 15 22 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 6723_up_of_Rv3188 15 22 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 5188_up_of_Rv3186 15 22 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 9767_down_of_Rv3190c 26 33 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 6730_up_of_Rv3188 26 33 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 5195_up_of_Rv3186 26 33 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 1688_down_of_Rv3180c 26 33 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 49_up_of_Rv3179 26 33 + -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 1682_down_of_Rv3180c 20 27 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 9761_down_of_Rv3190c 20 27 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 43_up_of_Rv3179 20 27 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 6724_up_of_Rv3188 20 27 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 sense_gca_460_from_start 20 27 - -1.39241 0.00484 0.135 ATATTGAT Rv0602c_pal_1 5189_up_of_Rv3186 20 27 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 antisense_PPE24_1570_to_stop 20 27 - -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 antisense_PPE24_1345_to_stop 20 27 - -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 antisense_PPE24_1270_to_stop 20 27 - -1.39241 0.00484 0.135 ATCACAAT Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 27 34 + -1.39241 0.00484 0.135 ATCAAAAT Rv0602c_pal_1 antisense_gca_467_from_start 21 28 - -1.39241 0.00484 0.135 ATCAATAT Rv0602c_pal_1 9754_down_of_Rv3190c 21 28 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 sense_PPE24_1577_to_stop 21 28 - -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 sense_PPE24_1352_to_stop 21 28 - -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 36_up_of_Rv3179 21 28 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 1675_down_of_Rv3180c 21 28 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 6717_up_of_Rv3188 21 28 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 sense_PPE24_1277_to_stop 21 28 - -1.39241 0.00484 0.135 ATTGTGAT Rv0602c_pal_1 5182_up_of_Rv3186 21 28 - -1.39241 0.00484 0.135 ATCAGTAT Rv0602c_pal_1 9767_down_of_Rv3190c 26 33 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 6730_up_of_Rv3188 26 33 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 5195_up_of_Rv3186 26 33 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 1688_down_of_Rv3180c 26 33 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 49_up_of_Rv3179 26 33 - -1.39241 0.00484 0.135 ATACTGAT Rv0602c_pal_1 antisense_mmpL4_1187_to_stop 27 34 - -1.39241 0.00484 0.135 ATTTTGAT Rv3676_nonpal_1 antisense_cobK_311_from_start 8 28 + -12.8077 0.00484 1 GATGATGGCGGTACCGGGATC Rv3676_nonpal_1 sense_cobK_304_from_start 20 40 - -12.8077 0.00484 1 GATGATGGCGGTACCGGGATC Rv2359_pal_1 sense_PPE24_1277_to_stop 13 33 + -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv2359_pal_1 sense_PPE24_1577_to_stop 13 33 + -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv2359_pal_1 sense_PPE24_1352_to_stop 13 33 + -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv2359_pal_1 antisense_PPE24_1570_to_stop 15 35 + -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 antisense_PPE24_1345_to_stop 15 35 + -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 antisense_PPE24_1270_to_stop 15 35 + -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 sense_PPE24_1577_to_stop 13 33 - -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 sense_PPE24_1352_to_stop 13 33 - -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 sense_PPE24_1277_to_stop 13 33 - -14.6381 0.00484 0.143 CACCGATTGTGATACCCGCGG Rv2359_pal_1 antisense_PPE24_1570_to_stop 15 35 - -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv2359_pal_1 antisense_PPE24_1345_to_stop 15 35 - -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv2359_pal_1 antisense_PPE24_1270_to_stop 15 35 - -14.6381 0.00484 0.143 CCGCGGGTATCACAATCGGTG Rv1473A_nonpal_1 sense_Rv1461_475_from_start 9 22 + -5.9726 0.00484 0.433 AGAGGATCTGGAGG Rv1473A_nonpal_1 antisense_Rv1461_472_from_start 16 29 - -5.9726 0.00484 0.433 AGAGGATCTGGAGG Rv1675c_pal_1 antisense_aldA_642_from_start 22 37 + -5.61905 0.00485 1 GGTGACGATGTTGACA Rv1675c_pal_1 antisense_aldA_642_from_start 22 37 - -5.61905 0.00485 1 TGTCAACATCGTCACC Rv2642_pal_1 antisense_accA1_595_from_start 6 26 + 0.37931 0.00485 0.682 ACACAAACCGCTCCAGGAATA Rv2642_pal_1 sense_accA1_598_from_start 12 32 + 0.37931 0.00485 0.682 TATTCCTGGAGCGGTTTGTGT Rv2642_pal_1 antisense_accA1_595_from_start 6 26 - 0.37931 0.00485 0.682 TATTCCTGGAGCGGTTTGTGT Rv2642_pal_1 sense_accA1_598_from_start 12 32 - 0.37931 0.00485 0.682 ACACAAACCGCTCCAGGAATA Rv0047c_nonpal_1 antisense_fadE7_121_to_stop 24 38 - 3.0625 0.00486 0.502 GCGGCAACGGGATAT Rv3249c_nonpal_1 sense_Rv2038c_183_from_start 25 35 + 2.95312 0.00486 0.47 GGATCGGCGAG Rv1846c_nonpal_1 3360_up_of_Rv3179 18 39 - -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 8506_up_of_Rv3186 18 39 - -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 4999_down_of_Rv3180c 18 39 - -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 10041_up_of_Rv3188 18 39 - -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 13078_down_of_Rv3190c 18 39 - -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 13071_down_of_Rv3190c 9 30 + -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 10034_up_of_Rv3188 9 30 + -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 3353_up_of_Rv3179 9 30 + -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 8499_up_of_Rv3186 9 30 + -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv1846c_nonpal_1 4992_down_of_Rv3180c 9 30 + -14.8085 0.00486 0.329 TACAGTAAACCGATTGGTGTAC Rv3736_nonpal_1 sense_pyrC_548_to_stop 13 27 + 3.3913 0.00487 0.626 CCAGGGTATTTCGAT Rv3736_nonpal_1 antisense_pyrC_541_to_stop 21 35 - 3.3913 0.00487 0.626 CCAGGGTATTTCGAT Rv1956_nonpal_1 sense_metA_384_from_start 4 24 - -1.10465 0.00487 0.286 GAGATCAGCGGAAATCTTGAG Rv0691c_pal_1 sense_pks6_424_from_start 18 29 + 3.27536 0.00487 0.182 GTATCCAGATCG Rv0691c_pal_1 sense_pks6_423_from_start 18 29 + 3.27536 0.00487 0.182 GTATCCAGATCG Rv0691c_pal_1 antisense_pks6_431_from_start 19 30 + 3.27536 0.00487 0.182 CGATCTGGATAC Rv0691c_pal_1 antisense_pks6_430_from_start 19 30 + 3.27536 0.00487 0.182 CGATCTGGATAC Rv0691c_pal_1 sense_pks6_424_from_start 18 29 - 3.27536 0.00487 0.182 CGATCTGGATAC Rv0691c_pal_1 sense_pks6_423_from_start 18 29 - 3.27536 0.00487 0.182 CGATCTGGATAC Rv0691c_pal_1 antisense_pks6_431_from_start 19 30 - 3.27536 0.00487 0.182 GTATCCAGATCG Rv0691c_pal_1 antisense_pks6_430_from_start 19 30 - 3.27536 0.00487 0.182 GTATCCAGATCG Rv2359_pal_1 1662_up_of_Rv2018 13 33 + -14.6667 0.00487 0.143 CTTCTCCAGTGAAATTGATAC Rv2359_pal_1 1662_up_of_Rv2018 13 33 - -14.6667 0.00487 0.143 GTATCAATTTCACTGGAGAAG Rv0981_nonpal_2 antisense_pyrC_541_to_stop 8 28 + -3.93684 0.00487 0.491 GACCTCGGCGGTGATCGAAAT Rv0981_nonpal_2 sense_pyrC_548_to_stop 20 40 - -3.93684 0.00487 0.491 GACCTCGGCGGTGATCGAAAT Rv0324_nonpal_1 sense_gca_460_from_start 3 10 - -2.82353 0.00487 0.36 TGTCGGTG Rv1473A_nonpal_2 10_up_of_Rv1866 26 33 - -2.43836 0.00487 0.327 CCATATCG Rv1473A_nonpal_2 sense_pks9_325_to_stop 18 25 + -2.43836 0.00487 0.327 CCAGATGG Rv2642_nonpal_1 3353_up_of_Rv3179 2 26 + -4.54651 0.00487 0.254 GACCTCCTACAGTAAACCGATTGGT Rv2642_nonpal_1 13071_down_of_Rv3190c 2 26 + -4.54651 0.00487 0.254 GACCTCCTACAGTAAACCGATTGGT Rv2642_nonpal_1 4992_down_of_Rv3180c 2 26 + -4.54651 0.00487 0.254 GACCTCCTACAGTAAACCGATTGGT Rv2642_nonpal_1 10034_up_of_Rv3188 2 26 + -4.54651 0.00487 0.254 GACCTCCTACAGTAAACCGATTGGT Rv2642_nonpal_1 8499_up_of_Rv3186 2 26 + -4.54651 0.00487 0.254 GACCTCCTACAGTAAACCGATTGGT Rv1219c_nonpal_1 sense_Rv1461_475_from_start 15 29 + -0.113924 0.00488 0.599 TCTGGAGGCTCAAGG Rv1219c_nonpal_1 antisense_Rv1461_472_from_start 9 23 - -0.113924 0.00488 0.599 TCTGGAGGCTCAAGG Rv1033c_nonpal_1 9767_down_of_Rv3190c 4 18 - -3.11392 0.00489 0.66 CTTATAACCGACACT Rv1033c_nonpal_1 6730_up_of_Rv3188 4 18 - -3.11392 0.00489 0.66 CTTATAACCGACACT Rv1033c_nonpal_1 49_up_of_Rv3179 4 18 - -3.11392 0.00489 0.66 CTTATAACCGACACT Rv1033c_nonpal_1 5195_up_of_Rv3186 4 18 - -3.11392 0.00489 0.66 CTTATAACCGACACT Rv1033c_nonpal_1 1688_down_of_Rv3180c 4 18 - -3.11392 0.00489 0.66 CTTATAACCGACACT Rv1033c_nonpal_1 antisense_aldA_642_from_start 22 36 - -3.11392 0.00489 0.66 GTCAACATCGTCACC Rv1674c_pal_1 1681_down_of_Rv3180c 7 28 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 42_up_of_Rv3179 7 28 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 9760_down_of_Rv3190c 7 28 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 6723_up_of_Rv3188 7 28 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 5188_up_of_Rv3186 7 28 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 1675_down_of_Rv3180c 13 34 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 9754_down_of_Rv3190c 13 34 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 36_up_of_Rv3179 13 34 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 6717_up_of_Rv3188 13 34 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 5182_up_of_Rv3186 13 34 + -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 1682_down_of_Rv3180c 14 35 + -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 43_up_of_Rv3179 14 35 + -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 9761_down_of_Rv3190c 14 35 + -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 6724_up_of_Rv3188 14 35 + -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 5189_up_of_Rv3186 14 35 + -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 1681_down_of_Rv3180c 7 28 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 42_up_of_Rv3179 7 28 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 9760_down_of_Rv3190c 7 28 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 6723_up_of_Rv3188 7 28 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 5188_up_of_Rv3186 7 28 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 1675_down_of_Rv3180c 13 34 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 9754_down_of_Rv3190c 13 34 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 36_up_of_Rv3179 13 34 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 6717_up_of_Rv3188 13 34 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 5182_up_of_Rv3186 13 34 - -0.208333 0.00489 0.103 ACACCGATCAGTATACAAGGAG Rv1674c_pal_1 1682_down_of_Rv3180c 14 35 - -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 43_up_of_Rv3179 14 35 - -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 9761_down_of_Rv3190c 14 35 - -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 6724_up_of_Rv3188 14 35 - -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv1674c_pal_1 5189_up_of_Rv3186 14 35 - -0.208333 0.00489 0.103 CTCCTTGTATACTGATCGGTGT Rv3849_pal_1 antisense_rocA_790_to_stop 2 9 + 5.03896 0.00489 1 ATAGCTAT Rv3849_pal_1 antisense_rocA_790_to_stop 2 9 - 5.03896 0.00489 1 ATAGCTAT Rv1255c_nonpal_1 sense_rocA_797_to_stop 6 25 + -3.45977 0.0049 0.442 GGCAGTGGGTGGGTACCAAT Rv2359_pal_1 antisense_fadE7_121_to_stop 3 23 + -14.6952 0.0049 0.143 GGATGACCGGGTACTCCAGCG Rv2359_pal_1 sense_fadE7_118_to_stop 15 35 + -14.6952 0.0049 0.143 CGCTGGAGTACCCGGTCATCC Rv2359_pal_1 antisense_fadE7_121_to_stop 3 23 - -14.6952 0.0049 0.143 CGCTGGAGTACCCGGTCATCC Rv2359_pal_1 sense_fadE7_118_to_stop 15 35 - -14.6952 0.0049 0.143 GGATGACCGGGTACTCCAGCG Rv0465c_pal_1 5189_up_of_Rv3186 6 33 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 9761_down_of_Rv3190c 6 33 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 1682_down_of_Rv3180c 6 33 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 6724_up_of_Rv3188 6 33 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 43_up_of_Rv3179 6 33 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 9760_down_of_Rv3190c 9 36 + -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 5188_up_of_Rv3186 9 36 + -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 42_up_of_Rv3179 9 36 + -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 6723_up_of_Rv3188 9 36 + -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 1681_down_of_Rv3180c 9 36 + -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 9767_down_of_Rv3190c 12 39 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 6730_up_of_Rv3188 12 39 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 49_up_of_Rv3179 12 39 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 1688_down_of_Rv3180c 12 39 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 5195_up_of_Rv3186 12 39 + -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 9761_down_of_Rv3190c 6 33 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 6724_up_of_Rv3188 6 33 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 43_up_of_Rv3179 6 33 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 1682_down_of_Rv3180c 6 33 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 5189_up_of_Rv3186 6 33 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 9760_down_of_Rv3190c 9 36 - -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 5188_up_of_Rv3186 9 36 - -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 1681_down_of_Rv3180c 9 36 - -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 6723_up_of_Rv3188 9 36 - -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 42_up_of_Rv3179 9 36 - -4.04545 0.0049 0.236 TTATAAGTACACCGATCAGTATACAAGG Rv0465c_pal_1 6730_up_of_Rv3188 12 39 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 49_up_of_Rv3179 12 39 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 9767_down_of_Rv3190c 12 39 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 5195_up_of_Rv3186 12 39 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv0465c_pal_1 1688_down_of_Rv3180c 12 39 - -4.04545 0.0049 0.236 CCTTGTATACTGATCGGTGTACTTATAA Rv2034_nonpal_1 3353_up_of_Rv3179 11 21 + 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 13071_down_of_Rv3190c 11 21 + 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 4992_down_of_Rv3180c 11 21 + 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 8499_up_of_Rv3186 11 21 + 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 10034_up_of_Rv3188 11 21 + 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 13078_down_of_Rv3190c 27 37 - 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 10041_up_of_Rv3188 27 37 - 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 8506_up_of_Rv3186 27 37 - 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 4999_down_of_Rv3180c 27 37 - 4.27941 0.0049 0.359 CAGTAAACCGA Rv2034_nonpal_1 3360_up_of_Rv3179 27 37 - 4.27941 0.0049 0.359 CAGTAAACCGA Rv0818_nonpal_1 1662_up_of_Rv2018 18 38 - -5.53191 0.0049 0.454 ATCTTGTATCAATTTCACTGG Rv0081_nonpal_1 9760_down_of_Rv3190c 21 35 + -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 43_up_of_Rv3179 7 21 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 1681_down_of_Rv3180c 21 35 + -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 42_up_of_Rv3179 21 35 + -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 6724_up_of_Rv3188 7 21 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 6723_up_of_Rv3188 21 35 + -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 5188_up_of_Rv3186 21 35 + -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 5189_up_of_Rv3186 7 21 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 9761_down_of_Rv3190c 7 21 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 1682_down_of_Rv3180c 7 21 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 49_up_of_Rv3179 13 27 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 6730_up_of_Rv3188 13 27 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 5195_up_of_Rv3186 13 27 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 1688_down_of_Rv3180c 13 27 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv0081_nonpal_1 9767_down_of_Rv3190c 13 27 - -0.84 0.00491 0.417 ATCGGTGTACTTATA Rv1049_nonpal_1 sense_Rv2038c_183_from_start 14 28 - 3.17143 0.00491 1 ATCCGGATACGCCCA Rv2506_nonpal_1 93_up_of_lpqG 16 34 + -4.62766 0.00492 0.502 CGTCGATGCCAGTACCCCG Rv0678_pal_2 sense_pyrC_548_to_stop 12 27 + 1.22667 0.00492 0.292 ACCAGGGTATTTCGAT Rv0678_pal_2 antisense_pyrC_541_to_stop 21 36 + 1.22667 0.00492 0.292 ATCGAAATACCCTGGT Rv0678_pal_2 sense_pyrC_548_to_stop 12 27 - 1.22667 0.00492 0.292 ATCGAAATACCCTGGT Rv0678_pal_2 antisense_pyrC_541_to_stop 21 36 - 1.22667 0.00492 0.292 ACCAGGGTATTTCGAT Rv0981_nonpal_2 4_up_of_Rv1049 2 22 + -3.97895 0.00492 0.491 GTAGCTACACGAGTCTGGAGT Rv0981_nonpal_2 7_up_of_Rv1049 16 36 - -3.97895 0.00492 0.491 GTAGCTACACGAGTCTGGAGT Rv2021c_pal_1 antisense_pyrC_541_to_stop 8 22 + 4.25287 0.00492 0.784 GACCTCGGCGGTGAT Rv2021c_pal_1 antisense_pyrC_541_to_stop 8 22 - 4.25287 0.00492 0.784 ATCACCGCCGAGGTC Rv2021c_pal_1 sense_pyrC_548_to_stop 26 40 + 4.25287 0.00492 0.784 ATCACCGCCGAGGTC Rv2021c_pal_1 sense_pyrC_548_to_stop 26 40 - 4.25287 0.00492 0.784 GACCTCGGCGGTGAT Rv0880_nonpal_1 sense_Rv1461_552_from_start 8 31 + -8.67368 0.00493 0.189 GAATATTTCGGTACAGTAATCCCT Rv0880_nonpal_1 antisense_Rv1461_559_from_start 17 40 - -8.67368 0.00493 0.189 GAATATTTCGGTACAGTAATCCCT Rv0691c_pal_1 antisense_frdA_787_from_start 22 33 + 3.23188 0.00493 0.182 GGTAGCGGTAGC Rv0691c_pal_1 antisense_frdA_787_from_start 22 33 - 3.23188 0.00493 0.182 GCTACCGCTACC Rv0767c_pal_1 antisense_Rv1251c_1309_from_start 7 18 + 4.40594 0.00493 0.989 GTACAGCGGCTC Rv0767c_pal_1 antisense_Rv1251c_1309_from_start 7 18 - 4.40594 0.00493 0.989 GAGCCGCTGTAC Rv3849_nonpal_2 antisense_Rv1461_559_from_start 3 30 - -16.1047 0.00494 1 GTACAGTAATCCCTGCCGGCGATAATAA Rv0757_nonpal_1 sense_gca_460_from_start 14 34 + -0.43038 0.00494 0.595 TGGCGTATCAATATCACAAGT Rv0757_nonpal_1 antisense_gca_467_from_start 14 34 - -0.43038 0.00494 0.595 TGGCGTATCAATATCACAAGT Rv2887_nonpal_1 antisense_gca_467_from_start 2 16 + -1.25 0.00495 0.519 GCATGCCGTAAGACT Rv2011c_pal_1 antisense_cobK_311_from_start 4 18 + 4.19444 0.00495 0.664 CCGCGATGATGGCGG Rv2011c_pal_1 antisense_cobK_311_from_start 4 18 - 4.19444 0.00495 0.664 CCGCCATCATCGCGG Rv0472c_nonpal_1 antisense_PPE24_1570_to_stop 1 11 - -3.95192 0.00495 0.247 TTAGTCTACCT Rv0472c_nonpal_1 antisense_PPE24_1345_to_stop 1 11 - -3.95192 0.00495 0.247 TTAGTCTACCT Rv0472c_nonpal_1 antisense_PPE24_1270_to_stop 1 11 - -3.95192 0.00495 0.247 TTAGTCTACCT Rv0967_pal_1 antisense_metA_391_from_start 13 19 + -2.77941 0.00495 0.605 GGTCACG Rv0967_pal_1 antisense_metA_391_from_start 13 19 - -2.77941 0.00495 0.605 CGTGACC Rv0967_pal_1 sense_Rv0674_10_to_stop 21 27 + -2.77941 0.00495 0.605 GGTGACA Rv0967_pal_1 antisense_aldA_642_from_start 22 28 + -2.77941 0.00495 0.605 GGTGACG Rv0967_pal_1 sense_Rv0674_10_to_stop 21 27 - -2.77941 0.00495 0.605 TGTCACC Rv0967_pal_1 antisense_aldA_642_from_start 22 28 - -2.77941 0.00495 0.605 CGTCACC Rv0967_pal_1 sense_metA_384_from_start 29 35 + -2.77941 0.00495 0.605 CGTGACC Rv0967_pal_1 10_up_of_Rv1866 32 38 + -2.77941 0.00495 0.605 GGTGACA Rv0967_pal_1 sense_bioB_253_to_stop 34 40 + -2.77941 0.00495 0.605 GGTGACG Rv0967_pal_1 sense_metA_384_from_start 29 35 - -2.77941 0.00495 0.605 GGTCACG Rv0967_pal_1 10_up_of_Rv1866 32 38 - -2.77941 0.00495 0.605 TGTCACC Rv0967_pal_1 sense_bioB_253_to_stop 34 40 - -2.77941 0.00495 0.605 CGTCACC Rv2989_nonpal_2 1662_up_of_Rv2018 23 37 + -3.41379 0.00495 0.991 GAAATTGATACAAGA Rv0081_nonpal_2 1662_up_of_Rv2018 9 30 - -27.5577 0.00495 0.662 TCAATTTCACTGGAGAAGGCCG Rv1404_nonpal_1 7_up_of_Rv1049 7 32 - -0.0625 0.00496 0.0939 CTACACGAGTCTGGAGTAATGGGCAA Rv1404_nonpal_1 sense_gca_460_from_start 12 37 - -0.0625 0.00496 0.0939 AAGACTTGTGATATTGATACGCCAGC Rv1404_nonpal_1 4_up_of_Rv1049 6 31 + -0.0625 0.00496 0.0939 CTACACGAGTCTGGAGTAATGGGCAA Rv1404_nonpal_1 antisense_gca_467_from_start 11 36 + -0.0625 0.00496 0.0939 AAGACTTGTGATATTGATACGCCAGC Rv0195_nonpal_1 sense_cobK_304_from_start 6 19 - -1.88298 0.00496 1 CCACGGCGGGCGAG Rv1674c_nonpal_1 4992_down_of_Rv3180c 6 23 - -8.61702 0.00496 0.357 AATCGGTTTACTGTAGGA Rv1674c_nonpal_1 10034_up_of_Rv3188 6 23 - -8.61702 0.00496 0.357 AATCGGTTTACTGTAGGA Rv1674c_nonpal_1 13071_down_of_Rv3190c 6 23 - -8.61702 0.00496 0.357 AATCGGTTTACTGTAGGA Rv1674c_nonpal_1 8499_up_of_Rv3186 6 23 - -8.61702 0.00496 0.357 AATCGGTTTACTGTAGGA Rv1674c_nonpal_1 3353_up_of_Rv3179 6 23 - -8.61702 0.00496 0.357 AATCGGTTTACTGTAGGA Rv0081_nonpal_1 sense_PE_PGRS54_112_from_start 12 26 + -0.88 0.00496 0.417 GACCACGCAGGTGCT Rv0081_nonpal_1 sense_PE_PGRS57_112_from_start 12 26 + -0.88 0.00496 0.417 GACCACGCAGGTGCT Rv3736_nonpal_1 sense_mmpL4_1184_to_stop 19 33 + 3.34783 0.00496 0.626 GGAGACCAATTCGAA Rv3736_nonpal_1 antisense_mmpL4_1187_to_stop 5 19 - 3.34783 0.00496 0.626 GGAGACCAATTCGAA Rv0275c_nonpal_1 antisense_frdA_787_from_start 13 38 + -14.1731 0.00496 0.186 AATCCTGGAGGTAGCGGTAGCCGTCT Rv0135c_pal_1 sense_PPE24_1277_to_stop 6 15 + 3.375 0.00497 0.278 ACGATACCCG Rv0135c_pal_1 sense_PPE24_1577_to_stop 6 15 + 3.375 0.00497 0.278 ACGATACCCG Rv0135c_pal_1 sense_PPE24_1352_to_stop 6 15 + 3.375 0.00497 0.278 ACGATACCCG Rv0135c_pal_1 sense_PPE24_1277_to_stop 6 15 - 3.375 0.00497 0.278 CGGGTATCGT Rv0135c_pal_1 sense_PPE24_1577_to_stop 6 15 - 3.375 0.00497 0.278 CGGGTATCGT Rv0135c_pal_1 sense_PPE24_1352_to_stop 6 15 - 3.375 0.00497 0.278 CGGGTATCGT Rv1219c_nonpal_2 antisense_frdA_787_from_start 6 33 + -43.5726 0.00497 0.491 AGGTCGTAATCCTGGAGGTAGCGGTAGC Rv2788_nonpal_2 1688_down_of_Rv3180c 1 28 - -23.2326 0.00497 0.459 GATCGGTGTACTTATAACCGACACTGTA Rv2788_nonpal_2 6730_up_of_Rv3188 1 28 - -23.2326 0.00497 0.459 GATCGGTGTACTTATAACCGACACTGTA Rv2788_nonpal_2 5195_up_of_Rv3186 1 28 - -23.2326 0.00497 0.459 GATCGGTGTACTTATAACCGACACTGTA Rv2788_nonpal_2 9767_down_of_Rv3190c 1 28 - -23.2326 0.00497 0.459 GATCGGTGTACTTATAACCGACACTGTA Rv2788_nonpal_2 49_up_of_Rv3179 1 28 - -23.2326 0.00497 0.459 GATCGGTGTACTTATAACCGACACTGTA Rv1719_nonpal_2 sense_Rv2038c_183_from_start 18 38 + -2.37647 0.00498 1 CGTATCCGGATCGGCGAGCGC Rv1846c_pal_1 antisense_Rv1461_559_from_start 5 19 + -2.42105 0.00498 0.239 ATTATCGCCGGCAGG Rv1846c_pal_1 antisense_Rv1461_559_from_start 5 19 - -2.42105 0.00498 0.239 CCTGCCGGCGATAAT Rv1049_nonpal_2 sense_bioB_253_to_stop 2 16 - 0.826667 0.00498 0.439 GGTCGGCGAACGGGG Rv3066_pal_1 sense_Rv2963_537_to_stop 9 22 + 1.70455 0.00498 1 GCGGCATGGGTACC Rv3066_pal_1 sense_Rv2963_537_to_stop 9 22 - 1.70455 0.00498 1 GGTACCCATGCCGC Rv3066_pal_1 antisense_Rv2963_530_to_stop 26 39 + 1.70455 0.00498 1 GGTACCCATGCCGC Rv3066_pal_1 antisense_Rv2963_530_to_stop 26 39 - 1.70455 0.00498 1 GCGGCATGGGTACC Rv0047c_pal_1 sense_Rv2963_537_to_stop 1 12 + 4.10606 0.00499 0.345 GTGCTATCGCGG Rv0047c_pal_1 sense_Rv2963_537_to_stop 1 12 - 4.10606 0.00499 0.345 CCGCGATAGCAC Rv2034_nonpal_1 antisense_Rv3282_217_to_stop 8 18 - 4.23529 0.00499 0.359 AGGCTTACCTG Rv2034_nonpal_1 447_down_of_accE5 8 18 - 4.23529 0.00499 0.359 AGGCTTACCTG Rv3249c_pal_1 10_up_of_Rv1866 21 32 + 4.38462 0.00499 0.329 GGCACCGATATG Rv3249c_pal_1 10_up_of_Rv1866 21 32 - 4.38462 0.00499 0.329 CATATCGGTGCC Rv1990c_pal_1 sense_Rv1278_1158_to_stop 24 38 + 4.27941 0.00499 1 GTCGCTGACCTAGCC Rv1990c_pal_1 sense_Rv1278_1158_to_stop 24 38 - 4.27941 0.00499 1 GGCTAGGTCAGCGAC Rv0022c_nonpal_1 antisense_Rv1461_472_from_start 19 33 + 1.47945 0.005 0.214 CCAGATCCTCTCTGA Rv0022c_nonpal_1 sense_Rv1461_475_from_start 5 19 - 1.47945 0.005 0.214 CCAGATCCTCTCTGA Rv2887_pal_1 sense_gca_460_from_start 7 21 + 1.0125 0.005 0.382 GACATGCTGGCGTAT Rv2887_pal_1 sense_gca_460_from_start 7 21 - 1.0125 0.005 0.382 ATACGCCAGCATGTC Rv0081_nonpal_2 93_up_of_lpqG 18 39 + -27.625 0.00501 0.662 TCGATGCCAGTACCCCGAAATT Rv0967_pal_2 antisense_Rv1251c_1309_from_start 13 23 + -10.519 0.00501 0.941 CGGCTCCAGCG Rv0967_pal_2 antisense_Rv1251c_1309_from_start 13 23 - -10.519 0.00501 0.941 CGCTGGAGCCG Rv3676_nonpal_1 sense_pyrC_548_to_stop 16 36 + -12.9808 0.00501 1 GGGTATTTCGATCACCGCCGA Rv3676_nonpal_1 antisense_pyrC_541_to_stop 12 32 - -12.9808 0.00501 1 GGGTATTTCGATCACCGCCGA Rv1719_nonpal_1 antisense_cobK_311_from_start 1 17 - 2.19737 0.00501 1 CGCCATCATCGCGGTAT Rv3849_nonpal_2 antisense_pyrC_541_to_stop 3 30 - -16.186 0.00501 1 GTATTTCGATCACCGCCGAGGTCACCCC Rv2887_nonpal_1 sense_PE_PGRS54_112_from_start 1 15 + -1.3 0.00502 0.519 GCAGCCAGTGCGACC Rv2887_nonpal_1 sense_PE_PGRS57_112_from_start 1 15 + -1.3 0.00502 0.519 GCAGCCAGTGCGACC Rv0653c_nonpal_1 antisense_cobK_311_from_start 3 21 + -0.835443 0.00502 0.195 ACCGCGATGATGGCGGTAC Rv0302_pal_1 antisense_Rv1461_416_from_start 28 39 + 4.23529 0.00502 0.277 AATCTCTGCTTC Rv0302_pal_1 antisense_Rv1461_416_from_start 28 39 - 4.23529 0.00502 0.277 GAAGCAGAGATT Rv0691c_pal_1 antisense_gca_467_from_start 3 14 + 3.15942 0.00502 0.182 CATGCCGTAAGA Rv0691c_pal_1 antisense_gca_467_from_start 3 14 - 3.15942 0.00502 0.182 TCTTACGGCATG Rv0047c_nonpal_1 sense_Rv2279_300_to_stop 18 32 + 2.96875 0.00502 0.502 GGGATCTCAGTACAC Rv0047c_nonpal_1 antisense_Rv2279_293_to_stop 16 30 - 2.96875 0.00502 0.502 GGGATCTCAGTACAC Rv1956_nonpal_1 3360_up_of_Rv3179 5 25 + -1.22093 0.00502 0.286 GTCAAAGCACAAAGTACACCA Rv1956_nonpal_1 4999_down_of_Rv3180c 5 25 + -1.22093 0.00502 0.286 GTCAAAGCACAAAGTACACCA Rv1956_nonpal_1 13078_down_of_Rv3190c 5 25 + -1.22093 0.00502 0.286 GTCAAAGCACAAAGTACACCA Rv1956_nonpal_1 10041_up_of_Rv3188 5 25 + -1.22093 0.00502 0.286 GTCAAAGCACAAAGTACACCA Rv1956_nonpal_1 8506_up_of_Rv3186 5 25 + -1.22093 0.00502 0.286 GTCAAAGCACAAAGTACACCA Rv0135c_nonpal_2 antisense_PPE24_1570_to_stop 3 30 + -25 0.00503 0.464 GTAGACTAAAGCCACCGATTGTGATACC Rv0135c_nonpal_2 antisense_PPE24_1345_to_stop 3 30 + -25 0.00503 0.464 GTAGACTAAAGCCACCGATTGTGATACC Rv0135c_nonpal_2 antisense_PPE24_1270_to_stop 3 30 + -25 0.00503 0.464 GTAGACTAAAGCCACCGATTGTGATACC Rv3488_pal_2 sense_metA_384_from_start 18 25 + -7.82558 0.00503 0.451 TGATCTCG Rv3488_pal_2 antisense_metA_391_from_start 23 30 + -7.82558 0.00503 0.451 CGAGATCA Rv3488_pal_2 sense_metA_384_from_start 18 25 - -7.82558 0.00503 0.451 CGAGATCA Rv3488_pal_2 antisense_metA_391_from_start 23 30 - -7.82558 0.00503 0.451 TGATCTCG Rv0022c_nonpal_1 antisense_Rv1251c_1309_from_start 7 21 - 1.45205 0.00503 0.214 CTGGAGCCGCTGTAC Rv3246c_nonpal_1 10_up_of_Rv1866 21 40 - 0.160494 0.00504 0.313 CGTGTCACCATATCGGTGCC Rv0767c_nonpal_1 sense_pks9_325_to_stop 15 29 - 3.12857 0.00504 0.445 ATAGCCATCTGGAGA Rv0081_nonpal_1 antisense_frdA_787_from_start 2 16 - -0.946667 0.00505 0.417 GATTACGACCTCGGC Rv1219c_nonpal_2 antisense_pks6_431_from_start 4 31 - -43.6923 0.00505 0.491 CGTATCCAGATCGTGGGTTCACGAATGC Rv1219c_nonpal_2 antisense_pks6_430_from_start 4 31 - -43.6923 0.00505 0.491 CGTATCCAGATCGTGGGTTCACGAATGC Rv1473A_nonpal_2 antisense_metA_391_from_start 12 19 - -2.45205 0.00505 0.331 CGTGACCA Rv1473A_nonpal_2 sense_metA_384_from_start 29 36 + -2.45205 0.00505 0.331 CGTGACCA Rv0047c_nonpal_1 sense_PPE24_1577_to_stop 1 15 - 2.95312 0.00505 0.502 CGGGTATCGTCAGCT Rv0047c_nonpal_1 sense_PPE24_1352_to_stop 1 15 - 2.95312 0.00505 0.502 CGGGTATCGTCAGCT Rv0047c_nonpal_1 sense_PPE24_1277_to_stop 1 15 - 2.95312 0.00505 0.502 CGGGTATCGTCAGCT Rv2009_nonpal_1 1662_up_of_Rv2018 9 29 + -1.36709 0.00505 0.279 CGGCCTTCTCCAGTGAAATTG Rv1556_nonpal_1 sense_Rv2963_537_to_stop 18 34 + -6.80851 0.00505 0.702 GTACCCGAATCGTTCTG Rv1556_nonpal_1 antisense_Rv2963_530_to_stop 14 30 - -6.80851 0.00505 0.702 GTACCCGAATCGTTCTG Rv2324_nonpal_1 antisense_Rv1251c_1309_from_start 6 24 + 3.78261 0.00506 0.364 GGTACAGCGGCTCCAGCGC Rv2324_nonpal_1 antisense_Rv1461_416_from_start 21 39 - 3.78261 0.00506 0.364 GAAGCAGAGATTAGTAGCT Rv0678_nonpal_1 sense_metA_384_from_start 15 29 + 3.84375 0.00506 0.246 CGCTGATCTCGATAC Rv0678_nonpal_1 antisense_metA_391_from_start 19 33 - 3.84375 0.00506 0.246 CGCTGATCTCGATAC Rv0081_pal_1 antisense_frdA_787_from_start 6 21 + 1.01333 0.00506 0.443 AGGTCGTAATCCTGGA Rv0081_pal_1 antisense_frdA_787_from_start 6 21 - 1.01333 0.00506 0.443 TCCAGGATTACGACCT Rv0472c_nonpal_1 9767_down_of_Rv3190c 6 16 - -4.08654 0.00507 0.247 TATAACCGACA Rv0472c_nonpal_1 49_up_of_Rv3179 6 16 - -4.08654 0.00507 0.247 TATAACCGACA Rv0472c_nonpal_1 1688_down_of_Rv3180c 6 16 - -4.08654 0.00507 0.247 TATAACCGACA Rv0472c_nonpal_1 6730_up_of_Rv3188 6 16 - -4.08654 0.00507 0.247 TATAACCGACA Rv0472c_nonpal_1 5195_up_of_Rv3186 6 16 - -4.08654 0.00507 0.247 TATAACCGACA Rv2642_pal_1 1662_up_of_Rv2018 6 26 + 0.241379 0.00507 0.682 AATCGGCCTTCTCCAGTGAAA Rv2642_pal_1 1662_up_of_Rv2018 6 26 - 0.241379 0.00507 0.682 TTTCACTGGAGAAGGCCGATT Rv2009_nonpal_1 antisense_fadE7_121_to_stop 14 34 + -1.37975 0.00507 0.279 TACTCCAGCGATATCCCGTTG Rv2009_nonpal_1 sense_fadE7_118_to_stop 4 24 - -1.37975 0.00507 0.279 TACTCCAGCGATATCCCGTTG Rv0324_nonpal_1 sense_pks9_325_to_stop 23 30 + -2.86765 0.00508 0.371 TGGCTATC Rv3066_nonpal_1 antisense_fadE7_121_to_stop 9 28 + -0.758621 0.00508 1 CCGGGTACTCCAGCGATATC Rv3066_nonpal_1 sense_fadE7_118_to_stop 10 29 - -0.758621 0.00508 1 CCGGGTACTCCAGCGATATC Rv1049_nonpal_2 antisense_aldA_642_from_start 17 31 - 0.746667 0.00508 0.44 CATCGTCACCTCCAG Rv0023_pal_2 antisense_mmpL4_1187_to_stop 25 40 + 2.68831 0.00508 0.341 TCATCAAAATCCGCGA Rv0023_pal_2 antisense_mmpL4_1187_to_stop 25 40 - 2.68831 0.00508 0.341 TCGCGGATTTTGATGA Rv0981_nonpal_1 6730_up_of_Rv3188 3 30 - -18.1038 0.00508 0.434 CTGATCGGTGTACTTATAACCGACACTG Rv0981_nonpal_1 5195_up_of_Rv3186 3 30 - -18.1038 0.00508 0.434 CTGATCGGTGTACTTATAACCGACACTG Rv0981_nonpal_1 49_up_of_Rv3179 3 30 - -18.1038 0.00508 0.434 CTGATCGGTGTACTTATAACCGACACTG Rv0981_nonpal_1 9767_down_of_Rv3190c 3 30 - -18.1038 0.00508 0.434 CTGATCGGTGTACTTATAACCGACACTG Rv0981_nonpal_1 1688_down_of_Rv3180c 3 30 - -18.1038 0.00508 0.434 CTGATCGGTGTACTTATAACCGACACTG Rv0047c_nonpal_1 sense_gca_460_from_start 23 37 + 2.9375 0.00508 0.502 AATATCACAAGTCTT Rv0047c_nonpal_1 antisense_gca_467_from_start 11 25 - 2.9375 0.00508 0.502 AATATCACAAGTCTT Rv3830c_pal_1 sense_Rv1461_552_from_start 12 27 + 1.87013 0.00508 1 ATTTCGGTACAGTAAT Rv3830c_pal_1 antisense_Rv1461_559_from_start 21 36 + 1.87013 0.00508 1 ATTACTGTACCGAAAT Rv3830c_pal_1 sense_Rv1461_552_from_start 12 27 - 1.87013 0.00508 1 ATTACTGTACCGAAAT Rv3830c_pal_1 antisense_Rv1461_559_from_start 21 36 - 1.87013 0.00508 1 ATTTCGGTACAGTAAT Rv2009_pal_1 sense_Rv1461_552_from_start 2 30 + 0.226277 0.00509 0.142 TTCAAGGAATATTTCGGTACAGTAATCCC Rv2009_pal_1 sense_Rv1461_552_from_start 2 30 - 0.226277 0.00509 0.142 GGGATTACTGTACCGAAATATTCCTTGAA Rv0967_nonpal_2 antisense_Rv0370c_389_from_start 1 21 - -17.5426 0.0051 1 CTCCAGTGCTGCTCATCGATG Rv2887_pal_1 antisense_Rv1251c_1309_from_start 16 30 + 0.95 0.0051 0.382 CTCCAGCGCCTTCAA Rv2887_pal_1 antisense_Rv1251c_1309_from_start 16 30 - 0.95 0.0051 0.382 TTGAAGGCGCTGGAG Rv0158_nonpal_1 sense_mptA_23_from_start 5 29 - -12.8679 0.0051 0.638 ATCAACCGCTGGAGCATGGCTCGGA Rv0158_nonpal_1 37_up_of_Rv2172c 5 29 - -12.8679 0.0051 0.638 ATCAACCGCTGGAGCATGGCTCGGA Rv0047c_nonpal_1 sense_metA_384_from_start 17 31 + 2.92188 0.00511 0.502 CTGATCTCGATACGT Rv0047c_nonpal_1 antisense_metA_391_from_start 17 31 - 2.92188 0.00511 0.502 CTGATCTCGATACGT Rv3416_nonpal_1 37_up_of_Rv2172c 8 32 - -8.01031 0.00511 0.484 CAAATCAACCGCTGGAGCATGGCTC Rv3416_nonpal_1 sense_mptA_23_from_start 8 32 - -8.01031 0.00511 0.484 CAAATCAACCGCTGGAGCATGGCTC Rv2324_nonpal_2 sense_Rv2038c_183_from_start 19 33 + -0.120482 0.00511 0.625 GTATCCGGATCGGCG Rv0022c_pal_1 antisense_fadE7_121_to_stop 5 26 + 1.85135 0.00512 0.168 ATGACCGGGTACTCCAGCGATA Rv0022c_pal_1 sense_fadE7_118_to_stop 12 33 + 1.85135 0.00512 0.168 TATCGCTGGAGTACCCGGTCAT Rv0022c_pal_1 antisense_fadE7_121_to_stop 5 26 - 1.85135 0.00512 0.168 TATCGCTGGAGTACCCGGTCAT Rv0022c_pal_1 sense_fadE7_118_to_stop 12 33 - 1.85135 0.00512 0.168 ATGACCGGGTACTCCAGCGATA Rv0023_nonpal_2 antisense_Rv1461_416_from_start 6 33 + -38.8462 0.00512 0.389 TTGTGCGGCTACTCCAGCTACTAATCTC Rv1776c_nonpal_1 antisense_treZ_470_to_stop 7 12 - 4.67123 0.00513 0.802 GTTTCA Rv1776c_nonpal_1 antisense_treY_785_to_stop 7 12 - 4.67123 0.00513 0.802 GTTTCA Rv1776c_nonpal_1 880_up_of_treZ 7 12 - 4.67123 0.00513 0.802 GTTTCA Rv1776c_nonpal_1 sense_treZ_467_to_stop 26 31 + 4.67123 0.00513 0.802 GTTTCA Rv1776c_nonpal_1 877_up_of_treZ 26 31 + 4.67123 0.00513 0.802 GTTTCA Rv3574_nonpal_2 37_up_of_Rv2172c 4 31 - -40.5385 0.00513 0.397 AAATCAACCGCTGGAGCATGGCTCGGAG Rv3574_nonpal_2 sense_mptA_23_from_start 4 31 - -40.5385 0.00513 0.397 AAATCAACCGCTGGAGCATGGCTCGGAG Rv0324_pal_1 antisense_pyrC_541_to_stop 7 18 + -0.592593 0.00514 0.841 TGACCTCGGCGG Rv0324_pal_1 antisense_pyrC_541_to_stop 7 18 - -0.592593 0.00514 0.841 CCGCCGAGGTCA Rv2788_nonpal_2 sense_Rv0674_10_to_stop 9 36 - -23.4302 0.00514 0.459 GATCACTCATGTCACCTCCAGGAGTTGA Rv3557c_nonpal_1 sense_accA1_598_from_start 2 21 - -16.6731 0.00514 0.341 TCCAGGAATAGCGTATCGTC Rv3557c_nonpal_1 antisense_accA1_595_from_start 17 36 + -16.6731 0.00514 0.341 TCCAGGAATAGCGTATCGTC Rv3736_nonpal_1 10_up_of_Rv1866 23 37 + 3.26087 0.00515 0.626 CACCGATATGGTGAC Rv1473A_pal_1 sense_mmpL4_1184_to_stop 2 13 + 1.67143 0.00515 0.514 GGATTTTGATGA Rv1473A_pal_1 sense_gca_460_from_start 5 16 + 1.67143 0.00515 0.514 CCGACATGCTGG Rv1473A_pal_1 sense_mmpL4_1184_to_stop 2 13 - 1.67143 0.00515 0.514 TCATCAAAATCC Rv1473A_pal_1 sense_gca_460_from_start 5 16 - 1.67143 0.00515 0.514 CCAGCATGTCGG Rv1473A_pal_1 antisense_mmpL4_1187_to_stop 25 36 + 1.67143 0.00515 0.514 TCATCAAAATCC Rv1473A_pal_1 antisense_mmpL4_1187_to_stop 25 36 - 1.67143 0.00515 0.514 GGATTTTGATGA Rv1219c_nonpal_1 7_up_of_Rv1049 25 39 + -0.303797 0.00515 0.599 TCGTGTAGCTACACG Rv1816_pal_1 10_up_of_Rv1866 19 31 + 4.1931 0.00515 0.2 GAGGCACCGATAT Rv1816_pal_1 10_up_of_Rv1866 19 31 - 4.1931 0.00515 0.2 ATATCGGTGCCTC Rv3488_nonpal_2 antisense_aldA_642_from_start 6 33 + -34.4681 0.00515 0.223 AAGCGTGACTGCTGGAGGTGACGATGTT Rv3488_nonpal_2 4999_down_of_Rv3180c 7 34 + -34.4681 0.00515 0.223 CAAAGCACAAAGTACACCAATCGGTTTA Rv3488_nonpal_2 13078_down_of_Rv3190c 7 34 + -34.4681 0.00515 0.223 CAAAGCACAAAGTACACCAATCGGTTTA Rv3488_nonpal_2 8506_up_of_Rv3186 7 34 + -34.4681 0.00515 0.223 CAAAGCACAAAGTACACCAATCGGTTTA Rv3488_nonpal_2 3360_up_of_Rv3179 7 34 + -34.4681 0.00515 0.223 CAAAGCACAAAGTACACCAATCGGTTTA Rv3488_nonpal_2 10041_up_of_Rv3188 7 34 + -34.4681 0.00515 0.223 CAAAGCACAAAGTACACCAATCGGTTTA Rv3066_pal_1 antisense_Rv2279_293_to_stop 17 30 + 1.60227 0.00515 1 TGTACTGAGATCCC Rv3066_pal_1 sense_Rv2279_300_to_stop 18 31 + 1.60227 0.00515 1 GGGATCTCAGTACA Rv3066_pal_1 antisense_Rv2279_293_to_stop 17 30 - 1.60227 0.00515 1 GGGATCTCAGTACA Rv3066_pal_1 sense_Rv2279_300_to_stop 18 31 - 1.60227 0.00515 1 TGTACTGAGATCCC Rv3488_pal_1 93_up_of_lpqG 19 26 + -1.67647 0.00516 0.325 CGATGCCA Rv3488_pal_1 93_up_of_lpqG 19 26 - -1.67647 0.00516 0.325 TGGCATCG Rv0135c_pal_1 sense_bioB_253_to_stop 19 28 + 3.25 0.00516 0.278 GAGGTAATGC Rv0135c_pal_1 sense_bioB_253_to_stop 19 28 - 3.25 0.00516 0.278 GCATTACCTC Rv0767c_nonpal_2 antisense_aldA_642_from_start 17 37 - -0.455696 0.00516 0.428 TGTCAACATCGTCACCTCCAG Rv0022c_nonpal_1 antisense_aldA_642_from_start 23 37 + 1.35616 0.00517 0.216 GTGACGATGTTGACA Rv3488_nonpal_2 sense_bioB_253_to_stop 5 32 + -34.4894 0.00517 0.223 CGTTCGCCGACCTGGAGGTAATGCCGGT Rv2359_pal_1 sense_pks9_325_to_stop 3 23 + -14.9524 0.00517 0.143 ACTACGCAATCGTCTCCAGAT Rv2359_pal_1 sense_pks9_325_to_stop 3 23 - -14.9524 0.00517 0.143 ATCTGGAGACGATTGCGTAGT Rv3249c_nonpal_2 sense_rocA_797_to_stop 7 21 + 2.04 0.00517 0.542 GCAGTGGGTGGGTAC Rv3736_nonpal_1 93_up_of_lpqG 8 22 + 3.24638 0.00518 0.626 GTAGGGCCCGTCGAT Rv0767c_nonpal_2 antisense_aldA_642_from_start 19 39 + -0.468354 0.00518 0.428 GGAGGTGACGATGTTGACAAC Rv0757_pal_1 sense_PE_PGRS57_112_from_start 8 21 + 3.4557 0.00518 0.719 GTGCGACCACGCAG Rv0757_pal_1 sense_PE_PGRS54_112_from_start 8 21 + 3.4557 0.00518 0.719 GTGCGACCACGCAG Rv0757_pal_1 sense_PE_PGRS57_112_from_start 8 21 - 3.4557 0.00518 0.719 CTGCGTGGTCGCAC Rv0757_pal_1 sense_PE_PGRS54_112_from_start 8 21 - 3.4557 0.00518 0.719 CTGCGTGGTCGCAC Rv0022c_nonpal_1 antisense_Rv2279_293_to_stop 7 21 + 1.34247 0.00518 0.216 CGGATCGATGTGTAC Rv0117_nonpal_1 antisense_Rv1461_472_from_start 7 33 - -16.5385 0.00519 0.39 TCAGAGAGGATCTGGAGGCTCAAGGAG Rv0117_nonpal_1 sense_Rv1461_475_from_start 5 31 + -16.5385 0.00519 0.39 TCAGAGAGGATCTGGAGGCTCAAGGAG Rv1404_pal_1 3360_up_of_Rv3179 11 23 + 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 10041_up_of_Rv3188 11 23 + 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 4999_down_of_Rv3180c 11 23 + 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 8506_up_of_Rv3186 11 23 + 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 13078_down_of_Rv3190c 11 23 + 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 8506_up_of_Rv3186 11 23 - 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 4999_down_of_Rv3180c 11 23 - 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 10041_up_of_Rv3188 11 23 - 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 13078_down_of_Rv3190c 11 23 - 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 3360_up_of_Rv3179 11 23 - 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 3353_up_of_Rv3179 25 37 + 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 8499_up_of_Rv3186 25 37 + 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 10034_up_of_Rv3188 25 37 + 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 4992_down_of_Rv3180c 25 37 + 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 13071_down_of_Rv3190c 25 37 + 3.55 0.00519 0.186 GTGTACTTTGTGC Rv1404_pal_1 3353_up_of_Rv3179 25 37 - 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 8499_up_of_Rv3186 25 37 - 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 4992_down_of_Rv3180c 25 37 - 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 13071_down_of_Rv3190c 25 37 - 3.55 0.00519 0.186 GCACAAAGTACAC Rv1404_pal_1 10034_up_of_Rv3188 25 37 - 3.55 0.00519 0.186 GCACAAAGTACAC Rv1719_nonpal_2 1662_up_of_Rv2018 11 31 - -2.56471 0.00519 1 ATCAATTTCACTGGAGAAGGC Rv1353c_pal_2 4999_down_of_Rv3180c 3 29 + -37.6239 0.00519 0.385 CCGTCAAAGCACAAAGTACACCAATCG Rv1353c_pal_2 3360_up_of_Rv3179 3 29 + -37.6239 0.00519 0.385 CCGTCAAAGCACAAAGTACACCAATCG Rv1353c_pal_2 8506_up_of_Rv3186 3 29 + -37.6239 0.00519 0.385 CCGTCAAAGCACAAAGTACACCAATCG Rv1353c_pal_2 13078_down_of_Rv3190c 3 29 + -37.6239 0.00519 0.385 CCGTCAAAGCACAAAGTACACCAATCG Rv1353c_pal_2 10041_up_of_Rv3188 3 29 + -37.6239 0.00519 0.385 CCGTCAAAGCACAAAGTACACCAATCG Rv1353c_pal_2 3360_up_of_Rv3179 3 29 - -37.6239 0.00519 0.385 CGATTGGTGTACTTTGTGCTTTGACGG Rv1353c_pal_2 13078_down_of_Rv3190c 3 29 - -37.6239 0.00519 0.385 CGATTGGTGTACTTTGTGCTTTGACGG Rv1353c_pal_2 8506_up_of_Rv3186 3 29 - -37.6239 0.00519 0.385 CGATTGGTGTACTTTGTGCTTTGACGG Rv1353c_pal_2 10041_up_of_Rv3188 3 29 - -37.6239 0.00519 0.385 CGATTGGTGTACTTTGTGCTTTGACGG Rv1353c_pal_2 4999_down_of_Rv3180c 3 29 - -37.6239 0.00519 0.385 CGATTGGTGTACTTTGTGCTTTGACGG Rv0302_nonpal_1 1662_up_of_Rv2018 21 35 + 2.84058 0.0052 0.421 GTGAAATTGATACAA Rv1353c_nonpal_2 sense_Rv2279_300_to_stop 11 31 - -38.0684 0.0052 0.357 TGTACTGAGATCCCCTATCCG Rv1353c_nonpal_2 sense_bioB_253_to_stop 16 36 - -38.0684 0.0052 0.357 ACCGACCGGCATTACCTCCAG Rv1353c_nonpal_2 sense_fadE7_118_to_stop 17 37 - -38.0684 0.0052 0.357 CCGGATGACCGGGTACTCCAG Rv1353c_nonpal_2 antisense_fadE7_121_to_stop 1 21 + -38.0684 0.0052 0.357 CCGGATGACCGGGTACTCCAG Rv1353c_nonpal_2 antisense_Rv2963_530_to_stop 6 26 + -38.0684 0.0052 0.357 AGCTCTGCCAGAACGATTCGG Rv1353c_nonpal_2 antisense_Rv2279_293_to_stop 17 37 + -38.0684 0.0052 0.357 TGTACTGAGATCCCCTATCCG Rv0135c_nonpal_2 sense_Rv0674_10_to_stop 3 30 - -25.2021 0.0052 0.464 TCATGTCACCTCCAGGAGTTGAGTTGCA Rv0081_nonpal_1 antisense_Rv1251c_1309_from_start 26 40 - -1.06667 0.0052 0.422 CTCGTTCAGCTTGAA Rv0653c_pal_1 1681_down_of_Rv3180c 4 27 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 5188_up_of_Rv3186 4 27 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 9760_down_of_Rv3190c 4 27 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 6723_up_of_Rv3188 4 27 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 42_up_of_Rv3179 4 27 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 36_up_of_Rv3179 10 33 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 5182_up_of_Rv3186 10 33 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 9754_down_of_Rv3190c 10 33 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 1675_down_of_Rv3180c 10 33 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 6717_up_of_Rv3188 10 33 + 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 5189_up_of_Rv3186 15 38 + 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 9761_down_of_Rv3190c 15 38 + 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 6724_up_of_Rv3188 15 38 + 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 43_up_of_Rv3179 15 38 + 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 1682_down_of_Rv3180c 15 38 + 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 5188_up_of_Rv3186 4 27 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 9760_down_of_Rv3190c 4 27 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 6723_up_of_Rv3188 4 27 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 42_up_of_Rv3179 4 27 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 1681_down_of_Rv3180c 4 27 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 5182_up_of_Rv3186 10 33 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 9754_down_of_Rv3190c 10 33 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 1675_down_of_Rv3180c 10 33 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 6717_up_of_Rv3188 10 33 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 36_up_of_Rv3179 10 33 - 1.24051 0.00521 0.129 CACCGATCAGTATACAAGGAGTCG Rv0653c_pal_1 9761_down_of_Rv3190c 15 38 - 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 1682_down_of_Rv3180c 15 38 - 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 6724_up_of_Rv3188 15 38 - 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 43_up_of_Rv3179 15 38 - 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0653c_pal_1 5189_up_of_Rv3186 15 38 - 1.24051 0.00521 0.129 CGACTCCTTGTATACTGATCGGTG Rv0678_pal_2 93_up_of_lpqG 22 37 + 1.06667 0.00521 0.292 TGCCAGTACCCCGAAA Rv0678_pal_2 93_up_of_lpqG 22 37 - 1.06667 0.00521 0.292 TTTCGGGGTACTGGCA Rv3416_nonpal_1 antisense_Rv2279_293_to_stop 4 28 + -8.09278 0.00521 0.484 AACCGGATCGATGTGTACTGAGATC Rv3249c_pal_2 8499_up_of_Rv3186 13 27 + -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 3353_up_of_Rv3179 13 27 + -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 13071_down_of_Rv3190c 13 27 + -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 4992_down_of_Rv3180c 13 27 + -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 10034_up_of_Rv3188 13 27 + -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 8506_up_of_Rv3186 21 35 + -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 13078_down_of_Rv3190c 21 35 + -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 3360_up_of_Rv3179 21 35 + -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 10041_up_of_Rv3188 21 35 + -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 4999_down_of_Rv3180c 21 35 + -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 8499_up_of_Rv3186 13 27 - -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 3353_up_of_Rv3179 13 27 - -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 13071_down_of_Rv3190c 13 27 - -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 4992_down_of_Rv3180c 13 27 - -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 10034_up_of_Rv3188 13 27 - -0.432432 0.00521 0.241 CACCAATCGGTTTAC Rv3249c_pal_2 3360_up_of_Rv3179 21 35 - -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 4999_down_of_Rv3180c 21 35 - -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 8506_up_of_Rv3186 21 35 - -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 13078_down_of_Rv3190c 21 35 - -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3249c_pal_2 10041_up_of_Rv3188 21 35 - -0.432432 0.00521 0.241 GTAAACCGATTGGTG Rv3246c_pal_1 sense_PPE24_1577_to_stop 8 23 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 sense_PPE24_1352_to_stop 8 23 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 sense_PPE24_1277_to_stop 8 23 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 sense_PPE24_1577_to_stop 8 23 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 sense_PPE24_1352_to_stop 8 23 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 sense_PPE24_1277_to_stop 8 23 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1345_to_stop 25 40 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1270_to_stop 25 40 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1570_to_stop 25 40 + 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1270_to_stop 25 40 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1570_to_stop 25 40 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3246c_pal_1 antisense_PPE24_1345_to_stop 25 40 - 3.14634 0.00521 0.128 GATACCCGCGGGTATC Rv3249c_nonpal_2 4999_down_of_Rv3180c 18 32 + 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 8506_up_of_Rv3186 18 32 + 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 3360_up_of_Rv3179 18 32 + 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 13078_down_of_Rv3190c 18 32 + 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 10041_up_of_Rv3188 18 32 + 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 4992_down_of_Rv3180c 16 30 - 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 13071_down_of_Rv3190c 16 30 - 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 10034_up_of_Rv3188 16 30 - 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 8499_up_of_Rv3186 16 30 - 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv3249c_nonpal_2 3353_up_of_Rv3179 16 30 - 2.01333 0.00521 0.542 GTACACCAATCGGTT Rv1353c_pal_1 antisense_treY_785_to_stop 2 12 + 4.83333 0.00521 0.334 AGAACTGAAAC Rv1353c_pal_1 880_up_of_treZ 2 12 + 4.83333 0.00521 0.334 AGAACTGAAAC Rv1353c_pal_1 antisense_treZ_470_to_stop 2 12 + 4.83333 0.00521 0.334 AGAACTGAAAC Rv1353c_pal_1 antisense_treY_785_to_stop 2 12 - 4.83333 0.00521 0.334 GTTTCAGTTCT Rv1353c_pal_1 antisense_treZ_470_to_stop 2 12 - 4.83333 0.00521 0.334 GTTTCAGTTCT Rv1353c_pal_1 880_up_of_treZ 2 12 - 4.83333 0.00521 0.334 GTTTCAGTTCT Rv1353c_pal_1 sense_treZ_467_to_stop 26 36 + 4.83333 0.00521 0.334 GTTTCAGTTCT Rv1353c_pal_1 877_up_of_treZ 26 36 + 4.83333 0.00521 0.334 GTTTCAGTTCT Rv1353c_pal_1 877_up_of_treZ 26 36 - 4.83333 0.00521 0.334 AGAACTGAAAC Rv1353c_pal_1 sense_treZ_467_to_stop 26 36 - 4.83333 0.00521 0.334 AGAACTGAAAC Rv0022c_pal_1 sense_metA_384_from_start 12 33 + 1.7973 0.00521 0.168 TTCCGCTGATCTCGATACGTGA Rv0022c_pal_1 antisense_metA_391_from_start 15 36 + 1.7973 0.00521 0.168 TCACGTATCGAGATCAGCGGAA Rv0022c_pal_1 sense_metA_384_from_start 12 33 - 1.7973 0.00521 0.168 TCACGTATCGAGATCAGCGGAA Rv0022c_pal_1 antisense_metA_391_from_start 15 36 - 1.7973 0.00521 0.168 TTCCGCTGATCTCGATACGTGA Rv0602c_pal_1 sense_PPE24_1577_to_stop 3 10 + -1.53165 0.00522 0.14 CTGACGAT Rv0602c_pal_1 sense_PPE24_1352_to_stop 3 10 + -1.53165 0.00522 0.14 CTGACGAT Rv0602c_pal_1 sense_PPE24_1277_to_stop 3 10 + -1.53165 0.00522 0.14 CTGACGAT Rv0602c_pal_1 sense_PPE24_1577_to_stop 3 10 - -1.53165 0.00522 0.14 ATCGTCAG Rv0602c_pal_1 sense_PPE24_1352_to_stop 3 10 - -1.53165 0.00522 0.14 ATCGTCAG Rv0602c_pal_1 sense_PPE24_1277_to_stop 3 10 - -1.53165 0.00522 0.14 ATCGTCAG Rv1049_nonpal_1 antisense_PPE24_1345_to_stop 18 32 + 3 0.00522 1 CGATTGTGATACCCG Rv1049_nonpal_1 antisense_PPE24_1270_to_stop 18 32 + 3 0.00522 1 CGATTGTGATACCCG Rv1049_nonpal_1 antisense_PPE24_1570_to_stop 18 32 + 3 0.00522 1 CGATTGTGATACCCG Rv1049_nonpal_1 sense_PPE24_1577_to_stop 16 30 - 3 0.00522 1 CGATTGTGATACCCG Rv1049_nonpal_1 sense_PPE24_1352_to_stop 16 30 - 3 0.00522 1 CGATTGTGATACCCG Rv1049_nonpal_1 sense_PPE24_1277_to_stop 16 30 - 3 0.00522 1 CGATTGTGATACCCG Rv1816_nonpal_1 sense_bioB_253_to_stop 3 19 + 2.76923 0.00522 0.298 CCCGTTCGCCGACCTGG Rv0678_pal_2 sense_metA_384_from_start 4 19 + 1.05333 0.00523 0.292 CTCAAGATTTCCGCTG Rv0678_pal_2 sense_metA_384_from_start 4 19 - 1.05333 0.00523 0.292 CAGCGGAAATCTTGAG Rv0653c_pal_1 antisense_fadE7_121_to_stop 4 27 + 1.22785 0.00523 0.129 GATGACCGGGTACTCCAGCGATAT Rv0653c_pal_1 sense_fadE7_118_to_stop 11 34 + 1.22785 0.00523 0.129 ATATCGCTGGAGTACCCGGTCATC Rv0653c_pal_1 antisense_fadE7_121_to_stop 4 27 - 1.22785 0.00523 0.129 ATATCGCTGGAGTACCCGGTCATC Rv0653c_pal_1 sense_fadE7_118_to_stop 11 34 - 1.22785 0.00523 0.129 GATGACCGGGTACTCCAGCGATAT Rv1816_pal_1 antisense_Rv1461_416_from_start 27 39 + 4.16552 0.00523 0.2 TAATCTCTGCTTC Rv1816_pal_1 antisense_Rv1461_416_from_start 27 39 - 4.16552 0.00523 0.2 GAAGCAGAGATTA Rv0576_nonpal_1 5189_up_of_Rv3186 2 27 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 9761_down_of_Rv3190c 2 27 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 43_up_of_Rv3179 2 27 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 1682_down_of_Rv3180c 2 27 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 6724_up_of_Rv3188 2 27 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 1688_down_of_Rv3180c 8 33 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 9767_down_of_Rv3190c 8 33 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 49_up_of_Rv3179 8 33 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 6730_up_of_Rv3188 8 33 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 5195_up_of_Rv3186 8 33 + -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 5188_up_of_Rv3186 15 40 - -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 9760_down_of_Rv3190c 15 40 - -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 6723_up_of_Rv3188 15 40 - -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 42_up_of_Rv3179 15 40 - -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0576_nonpal_1 1681_down_of_Rv3180c 15 40 - -0.454545 0.00523 0.132 TCGGTTATAAGTACACCGATCAGTAT Rv0302_nonpal_1 antisense_Rv1461_559_from_start 17 31 - 2.82609 0.00523 0.421 GGTACAGTAATCCCT Rv0302_nonpal_1 sense_Rv1461_552_from_start 17 31 + 2.82609 0.00523 0.421 GGTACAGTAATCCCT Rv2021c_nonpal_1 antisense_aldA_642_from_start 12 32 + -0.253012 0.00524 0.428 GACTGCTGGAGGTGACGATGT Rv3246c_nonpal_1 sense_PPE34_3066_to_stop 20 39 + 0.0246914 0.00524 0.313 CAGATTACGTGACAGTGAGT Rv3246c_nonpal_1 sense_PPE34_1664_from_start 20 39 + 0.0246914 0.00524 0.313 CAGATTACGTGACAGTGAGT Rv3246c_nonpal_1 sense_PPE34_1439_from_start 20 39 + 0.0246914 0.00524 0.313 CAGATTACGTGACAGTGAGT Rv0023_nonpal_1 antisense_cobK_311_from_start 2 22 + 3.12676 0.00524 0.16 TACCGCGATGATGGCGGTACC Rv3681c_pal_1 sense_Rv0674_10_to_stop 2 15 + 3.05952 0.00524 0.46 ATGCAACTCAACTC Rv3681c_pal_1 sense_Rv0674_10_to_stop 2 15 - 3.05952 0.00524 0.46 GAGTTGAGTTGCAT Rv0880_nonpal_1 antisense_Rv1461_559_from_start 17 40 + -8.96842 0.00524 0.189 AGGGATTACTGTACCGAAATATTC Rv0880_nonpal_1 sense_Rv1461_552_from_start 8 31 - -8.96842 0.00524 0.189 AGGGATTACTGTACCGAAATATTC Rv0691c_pal_1 sense_mptA_23_from_start 26 37 + 3.01449 0.00524 0.183 TGATTTGGCTAC Rv0691c_pal_1 37_up_of_Rv2172c 26 37 + 3.01449 0.00524 0.183 TGATTTGGCTAC Rv0691c_pal_1 37_up_of_Rv2172c 26 37 - 3.01449 0.00524 0.183 GTAGCCAAATCA Rv0691c_pal_1 sense_mptA_23_from_start 26 37 - 3.01449 0.00524 0.183 GTAGCCAAATCA Rv0653c_nonpal_1 sense_PPE24_1577_to_stop 15 33 + -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv0653c_nonpal_1 sense_PPE24_1352_to_stop 15 33 + -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv0653c_nonpal_1 sense_PPE24_1277_to_stop 15 33 + -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv0653c_nonpal_1 antisense_PPE24_1270_to_stop 15 33 - -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv0653c_nonpal_1 antisense_PPE24_1570_to_stop 15 33 - -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv0653c_nonpal_1 antisense_PPE24_1345_to_stop 15 33 - -1 0.00525 0.195 GCGGGTATCACAATCGGTG Rv1994c_pal_1 antisense_Rv1461_416_from_start 20 34 + 2.87838 0.00525 0.13 CAGCTACTAATCTCT Rv1994c_pal_1 antisense_Rv1461_416_from_start 20 34 - 2.87838 0.00525 0.13 AGAGATTAGTAGCTG Rv3488_nonpal_2 antisense_PPE24_1270_to_stop 9 36 + -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv3488_nonpal_2 antisense_PPE24_1345_to_stop 9 36 + -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv3488_nonpal_2 antisense_PPE24_1570_to_stop 9 36 + -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv3488_nonpal_2 sense_PPE24_1352_to_stop 12 39 - -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv3488_nonpal_2 sense_PPE24_1577_to_stop 12 39 - -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv3488_nonpal_2 sense_PPE24_1277_to_stop 12 39 - -34.5957 0.00525 0.223 TAAAGCCACCGATTGTGATACCCGCGGG Rv2021c_nonpal_1 sense_pyrC_548_to_stop 12 32 + -0.26506 0.00525 0.428 ACCAGGGTATTTCGATCACCG Rv2021c_nonpal_1 antisense_pyrC_541_to_stop 16 36 - -0.26506 0.00525 0.428 ACCAGGGTATTTCGATCACCG Rv1359_nonpal_1 sense_accA1_598_from_start 2 29 + -14.0769 0.00525 0.287 GACGATACGCTATTCCTGGAGCGGTTTG Rv1359_nonpal_1 antisense_Rv1461_472_from_start 2 29 + -14.0769 0.00525 0.287 TATGACTCCTTGAGCCTCCAGATCCTCT Rv1359_nonpal_1 antisense_accA1_595_from_start 9 36 - -14.0769 0.00525 0.287 GACGATACGCTATTCCTGGAGCGGTTTG Rv1359_nonpal_1 sense_Rv1461_475_from_start 9 36 - -14.0769 0.00525 0.287 TATGACTCCTTGAGCCTCCAGATCCTCT Rv0691c_nonpal_2 sense_pyrC_548_to_stop 14 37 + -41.0096 0.00526 0.63 CAGGGTATTTCGATCACCGCCGAG Rv0691c_nonpal_2 antisense_pyrC_541_to_stop 11 34 - -41.0096 0.00526 0.63 CAGGGTATTTCGATCACCGCCGAG Rv1219c_nonpal_2 sense_pks6_424_from_start 2 29 + -43.9402 0.00526 0.491 AGTGTGCGATAACAGCGTATCCAGATCG Rv1219c_nonpal_2 sense_pks6_423_from_start 2 29 + -43.9402 0.00526 0.491 AGTGTGCGATAACAGCGTATCCAGATCG Rv0135c_pal_1 antisense_metA_391_from_start 16 25 + 3.17188 0.00526 0.278 CACGTATCGA Rv0135c_pal_1 sense_metA_384_from_start 23 32 + 3.17188 0.00526 0.278 TCGATACGTG Rv0135c_pal_1 antisense_metA_391_from_start 16 25 - 3.17188 0.00526 0.278 TCGATACGTG Rv0135c_pal_1 sense_metA_384_from_start 23 32 - 3.17188 0.00526 0.278 CACGTATCGA Rv1719_pal_1 sense_Rv2038c_183_from_start 4 18 + 3.475 0.00527 1 CGCTGGACTGTGGGC Rv1719_pal_1 sense_Rv2038c_183_from_start 4 18 - 3.475 0.00527 1 GCCCACAGTCCAGCG Rv1359_nonpal_1 sense_pks6_424_from_start 9 36 + -14.1058 0.00528 0.287 GATAACAGCGTATCCAGATCGTGGGTTC Rv1359_nonpal_1 sense_pks6_423_from_start 9 36 + -14.1058 0.00528 0.287 GATAACAGCGTATCCAGATCGTGGGTTC Rv1359_nonpal_1 antisense_pks6_430_from_start 12 39 - -14.1058 0.00528 0.287 GATAACAGCGTATCCAGATCGTGGGTTC Rv1359_nonpal_1 antisense_pks6_431_from_start 12 39 - -14.1058 0.00528 0.287 GATAACAGCGTATCCAGATCGTGGGTTC Rv3249c_nonpal_2 sense_PE_PGRS57_112_from_start 12 26 + 1.96 0.00529 0.542 GACCACGCAGGTGCT Rv3249c_nonpal_2 sense_PE_PGRS54_112_from_start 12 26 + 1.96 0.00529 0.542 GACCACGCAGGTGCT Rv0023_nonpal_2 antisense_Rv3282_217_to_stop 5 32 - -39.0577 0.00529 0.389 GGCCTCCGATCTGGAGGCTTACCTGGCC Rv0023_nonpal_2 447_down_of_accE5 5 32 - -39.0577 0.00529 0.389 GGCCTCCGATCTGGAGGCTTACCTGGCC Rv1776c_nonpal_1 sense_Rv0674_10_to_stop 3 8 - 4.15068 0.00531 0.802 GTTGCA Rv1473A_pal_2 antisense_metA_391_from_start 11 18 + -2.32877 0.00531 0.269 CTGGTCAC Rv1473A_pal_2 antisense_metA_391_from_start 11 18 - -2.32877 0.00531 0.269 GTGACCAG Rv1473A_pal_2 sense_metA_384_from_start 30 37 + -2.32877 0.00531 0.269 GTGACCAG Rv1473A_pal_2 sense_metA_384_from_start 30 37 - -2.32877 0.00531 0.269 CTGGTCAC Rv1994c_nonpal_1 antisense_pks6_431_from_start 1 15 - 2.89041 0.00532 0.233 GTTCACGAATGCTGG Rv1994c_nonpal_1 antisense_pks6_430_from_start 1 15 - 2.89041 0.00532 0.233 GTTCACGAATGCTGG Rv0275c_nonpal_1 antisense_pks6_431_from_start 5 30 + -14.5192 0.00532 0.193 CATTCGTGAACCCACGATCTGGATAC Rv0275c_nonpal_1 antisense_pks6_430_from_start 5 30 + -14.5192 0.00532 0.193 CATTCGTGAACCCACGATCTGGATAC Rv3574_nonpal_1 antisense_pks6_431_from_start 10 24 + -1.01471 0.00532 0.255 GTGAACCCACGATCT Rv3574_nonpal_1 antisense_pks6_430_from_start 10 24 + -1.01471 0.00532 0.255 GTGAACCCACGATCT Rv3574_nonpal_1 sense_pks6_424_from_start 24 38 - -1.01471 0.00532 0.255 GTGAACCCACGATCT Rv3574_nonpal_1 sense_pks6_423_from_start 24 38 - -1.01471 0.00532 0.255 GTGAACCCACGATCT Rv2989_pal_1 antisense_mmpL4_1187_to_stop 11 27 + -2.27273 0.00533 0.763 TTGGTCTCCAGAAATCA Rv2989_pal_1 sense_mmpL4_1184_to_stop 11 27 + -2.27273 0.00533 0.763 TGATTTCTGGAGACCAA Rv2989_pal_1 sense_mmpL4_1184_to_stop 11 27 - -2.27273 0.00533 0.763 TTGGTCTCCAGAAATCA Rv2989_pal_1 antisense_mmpL4_1187_to_stop 11 27 - -2.27273 0.00533 0.763 TGATTTCTGGAGACCAA Rv1776c_pal_1 sense_Rv2038c_183_from_start 25 39 + 2.2439 0.00533 1 GGATCGGCGAGCGCG Rv1776c_pal_1 sense_Rv2038c_183_from_start 25 39 - 2.2439 0.00533 1 CGCGCTCGCCGATCC Rv1846c_nonpal_1 antisense_Rv1461_416_from_start 13 34 + -15.2766 0.00533 0.354 GCTACTCCAGCTACTAATCTCT Rv0047c_pal_1 43_up_of_Rv3179 3 14 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 6724_up_of_Rv3188 3 14 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 5189_up_of_Rv3186 3 14 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 1682_down_of_Rv3180c 3 14 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 9761_down_of_Rv3190c 3 14 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 6730_up_of_Rv3188 9 20 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 5195_up_of_Rv3186 9 20 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 1688_down_of_Rv3180c 9 20 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 9767_down_of_Rv3190c 9 20 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 49_up_of_Rv3179 9 20 + 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 6724_up_of_Rv3188 3 14 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 5189_up_of_Rv3186 3 14 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 1682_down_of_Rv3180c 3 14 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 9761_down_of_Rv3190c 3 14 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 43_up_of_Rv3179 3 14 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 6730_up_of_Rv3188 9 20 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 1688_down_of_Rv3180c 9 20 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 5195_up_of_Rv3186 9 20 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 49_up_of_Rv3179 9 20 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 9767_down_of_Rv3190c 9 20 - 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 9760_down_of_Rv3190c 28 39 + 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 1681_down_of_Rv3180c 28 39 + 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 42_up_of_Rv3179 28 39 + 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 6723_up_of_Rv3188 28 39 + 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 5188_up_of_Rv3186 28 39 + 3.9697 0.00534 0.345 TACTTATAACCG Rv0047c_pal_1 42_up_of_Rv3179 28 39 - 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 6723_up_of_Rv3188 28 39 - 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 5188_up_of_Rv3186 28 39 - 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 1681_down_of_Rv3180c 28 39 - 3.9697 0.00534 0.345 CGGTTATAAGTA Rv0047c_pal_1 9760_down_of_Rv3190c 28 39 - 3.9697 0.00534 0.345 CGGTTATAAGTA Rv2989_nonpal_2 antisense_aldA_642_from_start 22 36 + -3.74713 0.00534 0.991 GGTGACGATGTTGAC Rv2034_nonpal_1 1682_down_of_Rv3180c 10 20 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 9761_down_of_Rv3190c 10 20 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 43_up_of_Rv3179 10 20 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 6724_up_of_Rv3188 10 20 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 5189_up_of_Rv3186 10 20 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 1688_down_of_Rv3180c 16 26 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 49_up_of_Rv3179 16 26 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 9767_down_of_Rv3190c 16 26 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 6730_up_of_Rv3188 16 26 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 5195_up_of_Rv3186 16 26 + 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 5188_up_of_Rv3186 22 32 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 9760_down_of_Rv3190c 22 32 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 1681_down_of_Rv3180c 22 32 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 42_up_of_Rv3179 22 32 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 6723_up_of_Rv3188 22 32 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 5182_up_of_Rv3186 28 38 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 9754_down_of_Rv3190c 28 38 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 1675_down_of_Rv3180c 28 38 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 36_up_of_Rv3179 28 38 - 4.05882 0.00534 0.359 AAGTACACCGA Rv2034_nonpal_1 6717_up_of_Rv3188 28 38 - 4.05882 0.00534 0.359 AAGTACACCGA Rv0023_nonpal_1 37_up_of_Rv2172c 17 37 + 3.08451 0.00534 0.16 TCCAGCGGTTGATTTGGCTAC Rv0023_nonpal_1 sense_mptA_23_from_start 17 37 + 3.08451 0.00534 0.16 TCCAGCGGTTGATTTGGCTAC Rv3133c_nonpal_1 1662_up_of_Rv2018 7 21 + 3.44928 0.00534 0.505 ATCGGCCTTCTCCAG Rv3736_nonpal_1 sense_pks9_325_to_stop 22 36 - 3.17391 0.00534 0.626 CAAACCGATAGCCAT Rv2324_nonpal_2 sense_PPE24_1577_to_stop 19 33 + -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv2324_nonpal_2 sense_PPE24_1352_to_stop 19 33 + -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv2324_nonpal_2 sense_PPE24_1277_to_stop 19 33 + -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv2324_nonpal_2 antisense_PPE24_1570_to_stop 15 29 - -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv2324_nonpal_2 antisense_PPE24_1345_to_stop 15 29 - -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv2324_nonpal_2 antisense_PPE24_1270_to_stop 15 29 - -0.313253 0.00534 0.625 GTATCACAATCGGTG Rv1404_nonpal_1 antisense_PPE24_1570_to_stop 2 27 + -0.3125 0.00535 0.0984 GGTAGACTAAAGCCACCGATTGTGAT Rv1404_nonpal_1 antisense_PPE24_1345_to_stop 2 27 + -0.3125 0.00535 0.0984 GGTAGACTAAAGCCACCGATTGTGAT Rv1404_nonpal_1 antisense_PPE24_1270_to_stop 2 27 + -0.3125 0.00535 0.0984 GGTAGACTAAAGCCACCGATTGTGAT Rv0880_nonpal_1 sense_pks9_325_to_stop 12 35 - -9.06316 0.00535 0.189 AAACCGATAGCCATCTGGAGACGA Rv0023_pal_2 93_up_of_lpqG 15 30 + 2.53247 0.00535 0.341 CCGTCGATGCCAGTAC Rv0023_pal_2 93_up_of_lpqG 15 30 - 2.53247 0.00535 0.341 GTACTGGCATCGACGG Rv3249c_nonpal_2 antisense_aldA_642_from_start 22 36 + 1.92 0.00535 0.542 GGTGACGATGTTGAC Rv0023_pal_1 antisense_Rv2963_530_to_stop 19 26 + -2.17722 0.00536 0.496 CGATTCGG Rv0023_pal_1 sense_Rv2963_537_to_stop 22 29 + -2.17722 0.00536 0.496 CCGAATCG Rv0023_pal_1 antisense_Rv2963_530_to_stop 19 26 - -2.17722 0.00536 0.496 CCGAATCG Rv0023_pal_1 sense_Rv2963_537_to_stop 22 29 - -2.17722 0.00536 0.496 CGATTCGG Rv3488_nonpal_1 sense_Rv2963_537_to_stop 2 15 - -4.39706 0.00536 0.358 ATGCCGCGATAGCA Rv3416_nonpal_1 antisense_aldA_642_from_start 14 38 + -8.21649 0.00536 0.484 CTGCTGGAGGTGACGATGTTGACAA Rv0653c_nonpal_1 sense_bioB_253_to_stop 19 37 + -1.07595 0.00536 0.195 GAGGTAATGCCGGTCGGTG Rv2359_nonpal_1 sense_Rv0674_10_to_stop 11 38 - -23.1827 0.00536 0.264 CAGATCACTCATGTCACCTCCAGGAGTT Rv1473A_nonpal_1 sense_Rv1278_1158_to_stop 26 39 + -6.46575 0.00537 0.449 CGCTGACCTAGCCG Rv3736_nonpal_1 sense_bioB_253_to_stop 12 26 + 3.15942 0.00538 0.626 CGACCTGGAGGTAAT Rv0022c_nonpal_1 antisense_gca_467_from_start 18 32 + 1.20548 0.00538 0.216 GTGATATTGATACGC Rv0022c_nonpal_1 sense_bioB_253_to_stop 22 36 + 1.20548 0.00538 0.216 GTAATGCCGGTCGGT Rv0022c_nonpal_1 sense_gca_460_from_start 16 30 - 1.20548 0.00538 0.216 GTGATATTGATACGC Rv3249c_nonpal_1 sense_mmpL4_1184_to_stop 6 16 - 2.625 0.00538 0.47 AAATCATCAAA Rv3249c_nonpal_1 antisense_mmpL4_1187_to_stop 22 32 + 2.625 0.00538 0.47 AAATCATCAAA Rv0653c_nonpal_1 antisense_Rv1461_472_from_start 15 33 + -1.08861 0.00538 0.195 GCCTCCAGATCCTCTCTGA Rv0653c_nonpal_1 sense_Rv1461_475_from_start 5 23 - -1.08861 0.00538 0.195 GCCTCCAGATCCTCTCTGA Rv0273c_pal_1 sense_accA1_598_from_start 3 18 + 0.625 0.00538 0.442 ACGATACGCTATTCCT Rv0273c_pal_1 sense_accA1_598_from_start 3 18 - 0.625 0.00538 0.442 AGGAATAGCGTATCGT Rv0273c_pal_1 antisense_accA1_595_from_start 20 35 + 0.625 0.00538 0.442 AGGAATAGCGTATCGT Rv0273c_pal_1 antisense_accA1_595_from_start 20 35 - 0.625 0.00538 0.442 ACGATACGCTATTCCT Rv0602c_nonpal_1 sense_bioB_253_to_stop 28 39 - -0.69863 0.00539 0.481 GTCACCGACCGG Rv3574_nonpal_1 sense_PPE34_3066_to_stop 3 17 - -1.07353 0.00539 0.255 GGGAATCCGGGGAAA Rv3574_nonpal_1 sense_PPE34_1664_from_start 3 17 - -1.07353 0.00539 0.255 GGGAATCCGGGGAAA Rv3574_nonpal_1 sense_PPE34_1439_from_start 3 17 - -1.07353 0.00539 0.255 GGGAATCCGGGGAAA Rv3574_nonpal_1 antisense_PPE34_1661_from_start 21 35 + -1.07353 0.00539 0.255 GGGAATCCGGGGAAA Rv1846c_pal_1 5188_up_of_Rv3186 3 17 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 1681_down_of_Rv3180c 3 17 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 9760_down_of_Rv3190c 3 17 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 6723_up_of_Rv3188 3 17 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 42_up_of_Rv3179 3 17 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 36_up_of_Rv3179 9 23 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 5182_up_of_Rv3186 9 23 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 9754_down_of_Rv3190c 9 23 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 1675_down_of_Rv3180c 9 23 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 6717_up_of_Rv3188 9 23 + -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 1681_down_of_Rv3180c 3 17 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 9760_down_of_Rv3190c 3 17 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 5188_up_of_Rv3186 3 17 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 6723_up_of_Rv3188 3 17 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 42_up_of_Rv3179 3 17 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 36_up_of_Rv3179 9 23 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 5182_up_of_Rv3186 9 23 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 9754_down_of_Rv3190c 9 23 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 1675_down_of_Rv3180c 9 23 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 6717_up_of_Rv3188 9 23 - -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 5189_up_of_Rv3186 25 39 + -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 9761_down_of_Rv3190c 25 39 + -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 1682_down_of_Rv3180c 25 39 + -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 43_up_of_Rv3179 25 39 + -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 6724_up_of_Rv3188 25 39 + -2.74737 0.00539 0.239 TATACAAGGAGTCGG Rv1846c_pal_1 5189_up_of_Rv3186 25 39 - -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 9761_down_of_Rv3190c 25 39 - -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 1682_down_of_Rv3180c 25 39 - -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 43_up_of_Rv3179 25 39 - -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1846c_pal_1 6724_up_of_Rv3188 25 39 - -2.74737 0.00539 0.239 CCGACTCCTTGTATA Rv1033c_nonpal_1 antisense_Rv1461_559_from_start 2 16 + -3.53165 0.00539 0.66 CTTATTATCGCCGGC Rv0691c_pal_2 antisense_pyrC_541_to_stop 5 13 + -2.06329 0.00539 0.593 GGTGACCTC Rv0691c_pal_2 antisense_pyrC_541_to_stop 5 13 - -2.06329 0.00539 0.593 GAGGTCACC Rv2021c_nonpal_1 sense_metA_384_from_start 3 23 + -0.361446 0.00539 0.428 GCTCAAGATTTCCGCTGATCT Rv3849_nonpal_1 antisense_aldA_642_from_start 9 20 + -2.15068 0.00539 0.61 CGTGACTGCTGG Rv0339c_nonpal_2 sense_bioB_253_to_stop 1 21 - -12.9712 0.0054 0.72 CTCCAGGTCGGCGAACGGGGT Rv0022c_nonpal_1 93_up_of_lpqG 18 32 + 1.19178 0.0054 0.216 TCGATGCCAGTACCC Rv1776c_pal_1 antisense_Rv1461_472_from_start 3 17 + 2.19512 0.0054 1 ATGACTCCTTGAGCC Rv1776c_pal_1 antisense_Rv1461_472_from_start 3 17 - 2.19512 0.0054 1 GGCTCAAGGAGTCAT Rv1776c_pal_1 sense_Rv1461_475_from_start 21 35 + 2.19512 0.0054 1 GGCTCAAGGAGTCAT Rv1776c_pal_1 sense_Rv1461_475_from_start 21 35 - 2.19512 0.0054 1 ATGACTCCTTGAGCC Rv3574_nonpal_1 sense_Rv1461_552_from_start 9 23 + -1.08824 0.0054 0.255 AATATTTCGGTACAG Rv3574_nonpal_1 antisense_Rv1461_559_from_start 25 39 - -1.08824 0.0054 0.255 AATATTTCGGTACAG Rv2034_nonpal_1 antisense_aldA_642_from_start 20 30 + 4.02941 0.00541 0.359 GAGGTGACGAT Rv0691c_nonpal_1 antisense_Rv2963_530_to_stop 8 21 - -0.609375 0.00541 0.446 TCGTTCTGGCAGAG Rv0691c_nonpal_1 sense_Rv2963_537_to_stop 27 40 + -0.609375 0.00541 0.446 TCGTTCTGGCAGAG Rv0022c_pal_1 sense_Rv0674_10_to_stop 11 32 + 1.68919 0.00542 0.168 AACTCCTGGAGGTGACATGAGT Rv0022c_pal_1 sense_Rv0674_10_to_stop 11 32 - 1.68919 0.00542 0.168 ACTCATGTCACCTCCAGGAGTT Rv0339c_nonpal_1 sense_pks9_325_to_stop 27 40 + 1.52874 0.00542 1 TATCGGTTTGCCCG Rv1719_nonpal_1 sense_metA_384_from_start 20 36 + 1.96053 0.00542 1 ATCTCGATACGTGACCA Rv1719_nonpal_1 antisense_metA_391_from_start 12 28 - 1.96053 0.00542 1 ATCTCGATACGTGACCA Rv2788_nonpal_1 antisense_frdA_787_from_start 13 40 + -33.0814 0.00543 0.899 AATCCTGGAGGTAGCGGTAGCCGTCTTT Rv1049_pal_1 sense_Rv0674_10_to_stop 18 32 + 2.21333 0.00543 1 GGAGGTGACATGAGT Rv1049_pal_1 sense_Rv0674_10_to_stop 18 32 - 2.21333 0.00543 1 ACTCATGTCACCTCC Rv1255c_nonpal_1 antisense_Rv1461_416_from_start 12 31 + -3.90805 0.00543 0.465 GGCTACTCCAGCTACTAATC Rv0023_pal_1 antisense_frdA_787_from_start 4 11 + -2.37975 0.00543 0.496 CGAGGTCG Rv0023_pal_1 antisense_frdA_787_from_start 4 11 - -2.37975 0.00543 0.496 CGACCTCG Rv3249c_nonpal_2 antisense_frdA_787_from_start 23 37 - 1.86667 0.00543 0.542 GACGGCTACCGCTAC Rv3736_nonpal_1 8506_up_of_Rv3186 5 19 - 3.13043 0.00544 0.626 ACTTTGTGCTTTGAC Rv3736_nonpal_1 13078_down_of_Rv3190c 5 19 - 3.13043 0.00544 0.626 ACTTTGTGCTTTGAC Rv3736_nonpal_1 3360_up_of_Rv3179 5 19 - 3.13043 0.00544 0.626 ACTTTGTGCTTTGAC Rv3736_nonpal_1 10041_up_of_Rv3188 5 19 - 3.13043 0.00544 0.626 ACTTTGTGCTTTGAC Rv3736_nonpal_1 4999_down_of_Rv3180c 5 19 - 3.13043 0.00544 0.626 ACTTTGTGCTTTGAC Rv2989_nonpal_1 sense_mmpL4_1184_to_stop 11 31 + -2.01316 0.00544 0.662 TGATTTCTGGAGACCAATTCG Rv2989_nonpal_1 antisense_mmpL4_1187_to_stop 7 27 - -2.01316 0.00544 0.662 TGATTTCTGGAGACCAATTCG Rv1556_nonpal_1 antisense_fadE7_121_to_stop 2 18 + -7.14894 0.00545 0.702 CGGATGACCGGGTACTC Rv1556_nonpal_1 sense_fadE7_118_to_stop 20 36 - -7.14894 0.00545 0.702 CGGATGACCGGGTACTC Rv0576_nonpal_1 3353_up_of_Rv3179 15 40 + -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 4992_down_of_Rv3180c 15 40 + -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 10034_up_of_Rv3188 15 40 + -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 8499_up_of_Rv3186 15 40 + -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 13071_down_of_Rv3190c 15 40 + -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 13078_down_of_Rv3190c 8 33 - -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 4999_down_of_Rv3180c 8 33 - -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 10041_up_of_Rv3188 8 33 - -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 8506_up_of_Rv3186 8 33 - -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv0576_nonpal_1 3360_up_of_Rv3179 8 33 - -0.602273 0.00545 0.132 AAACCGATTGGTGTACTTTGTGCTTT Rv2359_pal_1 antisense_frdA_787_from_start 18 38 + -15.2095 0.00545 0.143 TGGAGGTAGCGGTAGCCGTCT Rv2359_pal_1 antisense_frdA_787_from_start 18 38 - -15.2095 0.00545 0.143 AGACGGCTACCGCTACCTCCA Rv1674c_pal_1 sense_Rv0674_10_to_stop 2 23 + -0.53125 0.00546 0.113 ATGCAACTCAACTCCTGGAGGT Rv1674c_pal_1 sense_Rv0674_10_to_stop 2 23 - -0.53125 0.00546 0.113 ACCTCCAGGAGTTGAGTTGCAT Rv0081_pal_1 antisense_gca_467_from_start 7 22 + 0.786667 0.00546 0.443 CCGTAAGACTTGTGAT Rv0081_pal_1 antisense_gca_467_from_start 7 22 - 0.786667 0.00546 0.443 ATCACAAGTCTTACGG Rv0158_nonpal_1 13071_down_of_Rv3190c 3 27 + -13.2075 0.00546 0.638 ACCTCCTACAGTAAACCGATTGGTG Rv0158_nonpal_1 10034_up_of_Rv3188 3 27 + -13.2075 0.00546 0.638 ACCTCCTACAGTAAACCGATTGGTG Rv0158_nonpal_1 8499_up_of_Rv3186 3 27 + -13.2075 0.00546 0.638 ACCTCCTACAGTAAACCGATTGGTG Rv0158_nonpal_1 3353_up_of_Rv3179 3 27 + -13.2075 0.00546 0.638 ACCTCCTACAGTAAACCGATTGGTG Rv0158_nonpal_1 4992_down_of_Rv3180c 3 27 + -13.2075 0.00546 0.638 ACCTCCTACAGTAAACCGATTGGTG Rv0081_nonpal_2 antisense_metA_391_from_start 16 37 + -28.1442 0.00547 0.662 CACGTATCGAGATCAGCGGAAA Rv0081_nonpal_2 sense_metA_384_from_start 11 32 - -28.1442 0.00547 0.662 CACGTATCGAGATCAGCGGAAA Rv1473A_nonpal_1 antisense_frdA_787_from_start 7 20 - -6.54795 0.00547 0.449 CCAGGATTACGACC Rv0465c_nonpal_1 antisense_cobK_311_from_start 4 27 + -17.6437 0.00548 0.793 CCGCGATGATGGCGGTACCGGGAT Rv3249c_pal_1 93_up_of_lpqG 28 39 + 4.2 0.00548 0.329 TACCCCGAAATT Rv3249c_pal_1 93_up_of_lpqG 28 39 - 4.2 0.00548 0.329 AATTTCGGGGTA Rv3574_nonpal_1 sense_pyrC_548_to_stop 9 23 + -1.16176 0.00549 0.255 AGGACCAGGGTATTT Rv3574_nonpal_1 antisense_pyrC_541_to_stop 25 39 - -1.16176 0.00549 0.255 AGGACCAGGGTATTT Rv0302_nonpal_2 antisense_aldA_642_from_start 18 28 - -1.9359 0.00549 1 CGTCACCTCCA Rv0302_nonpal_1 antisense_accA1_595_from_start 26 40 + 2.71014 0.00549 0.421 AGCGTATCGTCCCCG Rv0022c_pal_1 antisense_Rv1461_416_from_start 9 30 + 1.64865 0.00549 0.168 TGCGGCTACTCCAGCTACTAAT Rv0022c_pal_1 antisense_Rv1461_416_from_start 9 30 - 1.64865 0.00549 0.168 ATTAGTAGCTGGAGTAGCCGCA Rv3676_nonpal_1 antisense_Rv1461_559_from_start 6 26 - -13.4327 0.00549 1 AGTAATCCCTGCCGGCGATAA Rv2506_nonpal_1 antisense_fadE7_121_to_stop 13 31 + -5.09574 0.0055 0.53 GTACTCCAGCGATATCCCG Rv2506_nonpal_1 sense_fadE7_118_to_stop 7 25 - -5.09574 0.0055 0.53 GTACTCCAGCGATATCCCG Rv1033c_nonpal_1 antisense_mmpL4_1187_to_stop 24 38 + -3.62025 0.00551 0.66 ATCATCAAAATCCGC Rv2989_nonpal_2 sense_pks6_423_from_start 20 34 - -3.88506 0.00551 0.991 ACCCACGATCTGGAT Rv2989_nonpal_2 sense_pks6_424_from_start 20 34 - -3.88506 0.00551 0.991 ACCCACGATCTGGAT Rv2989_nonpal_2 antisense_pks6_430_from_start 14 28 + -3.88506 0.00551 0.991 ACCCACGATCTGGAT Rv2989_nonpal_2 antisense_pks6_431_from_start 14 28 + -3.88506 0.00551 0.991 ACCCACGATCTGGAT Rv0273c_pal_1 1662_up_of_Rv2018 3 18 + 0.5375 0.00551 0.442 ATGAATCGGCCTTCTC Rv0273c_pal_1 1662_up_of_Rv2018 3 18 - 0.5375 0.00551 0.442 GAGAAGGCCGATTCAT Rv2989_nonpal_1 antisense_mmpL4_1187_to_stop 12 32 + -2.06579 0.00551 0.662 TGGTCTCCAGAAATCATCAAA Rv2989_nonpal_1 sense_mmpL4_1184_to_stop 6 26 - -2.06579 0.00551 0.662 TGGTCTCCAGAAATCATCAAA Rv0023_nonpal_1 sense_Rv2279_300_to_stop 6 26 - 3.01408 0.00551 0.16 TGAGATCCCCTATCCGTATGG Rv0022c_pal_1 7_up_of_Rv1049 7 28 + 1.63514 0.00552 0.168 TTGCCCATTACTCCAGACTCGT Rv0022c_pal_1 4_up_of_Rv1049 10 31 + 1.63514 0.00552 0.168 ACGAGTCTGGAGTAATGGGCAA Rv0022c_pal_1 7_up_of_Rv1049 7 28 - 1.63514 0.00552 0.168 ACGAGTCTGGAGTAATGGGCAA Rv0022c_pal_1 4_up_of_Rv1049 10 31 - 1.63514 0.00552 0.168 TTGCCCATTACTCCAGACTCGT Rv0023_nonpal_2 sense_Rv1461_475_from_start 11 38 + -39.3365 0.00552 0.394 AGGATCTGGAGGCTCAAGGAGTCATATT Rv2009_nonpal_1 13071_down_of_Rv3190c 20 40 + -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 8499_up_of_Rv3186 20 40 + -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 4992_down_of_Rv3180c 20 40 + -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 10034_up_of_Rv3188 20 40 + -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 3353_up_of_Rv3179 20 40 + -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 13078_down_of_Rv3190c 8 28 - -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 10041_up_of_Rv3188 8 28 - -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 4999_down_of_Rv3180c 8 28 - -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 8506_up_of_Rv3186 8 28 - -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv2009_nonpal_1 3360_up_of_Rv3179 8 28 - -1.6962 0.00553 0.279 GATTGGTGTACTTTGTGCTTT Rv0047c_nonpal_2 9760_down_of_Rv3190c 1 28 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 42_up_of_Rv3179 1 28 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 6723_up_of_Rv3188 1 28 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 1681_down_of_Rv3180c 1 28 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 5188_up_of_Rv3186 1 28 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 9754_down_of_Rv3190c 7 34 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 36_up_of_Rv3179 7 34 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 1675_down_of_Rv3180c 7 34 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 6717_up_of_Rv3188 7 34 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv0047c_nonpal_2 5182_up_of_Rv3186 7 34 - -39.6239 0.00553 0.28 ACACCGATCAGTATACAAGGAGTCGGCG Rv3676_nonpal_1 antisense_aldA_642_from_start 17 37 - -13.4615 0.00553 1 TGTCAACATCGTCACCTCCAG Rv0135c_nonpal_1 sense_pks6_424_from_start 15 25 + -0.859375 0.00553 0.487 AGCGTATCCAG Rv0135c_nonpal_1 sense_pks6_423_from_start 15 25 + -0.859375 0.00553 0.487 AGCGTATCCAG Rv0135c_nonpal_1 antisense_frdA_787_from_start 19 29 - -0.859375 0.00553 0.487 CCGCTACCTCC Rv0135c_nonpal_1 antisense_pks6_430_from_start 23 33 - -0.859375 0.00553 0.487 AGCGTATCCAG Rv0135c_nonpal_1 antisense_pks6_431_from_start 23 33 - -0.859375 0.00553 0.487 AGCGTATCCAG Rv1956_pal_1 sense_metA_384_from_start 6 13 + -0.686047 0.00554 0.234 CAAGATTT Rv1956_pal_1 sense_metA_384_from_start 6 13 - -0.686047 0.00554 0.234 AAATCTTG Rv2788_nonpal_1 antisense_cobK_311_from_start 2 29 + -33.2209 0.00554 0.899 TACCGCGATGATGGCGGTACCGGGATCC Rv0023_nonpal_1 sense_metA_384_from_start 10 30 + 3 0.00555 0.16 ATTTCCGCTGATCTCGATACG Rv0023_nonpal_1 sense_accA1_598_from_start 16 36 + 3 0.00555 0.16 CCTGGAGCGGTTTGTGTTGCG Rv0023_nonpal_1 antisense_accA1_595_from_start 2 22 - 3 0.00555 0.16 CCTGGAGCGGTTTGTGTTGCG Rv0023_nonpal_1 antisense_metA_391_from_start 18 38 - 3 0.00555 0.16 ATTTCCGCTGATCTCGATACG Rv1674c_nonpal_1 37_up_of_Rv2172c 18 35 - -9.14894 0.00555 0.357 AGCCAAATCAACCGCTGG Rv1674c_nonpal_1 sense_mptA_23_from_start 18 35 - -9.14894 0.00555 0.357 AGCCAAATCAACCGCTGG Rv3574_nonpal_2 37_up_of_Rv2172c 12 39 - -41.0256 0.00555 0.397 CTGTAGCCAAATCAACCGCTGGAGCATG Rv3574_nonpal_2 sense_mptA_23_from_start 12 39 - -41.0256 0.00555 0.397 CTGTAGCCAAATCAACCGCTGGAGCATG Rv0818_pal_1 antisense_gca_467_from_start 9 24 + 0.1875 0.00555 0.168 GTAAGACTTGTGATAT Rv0818_pal_1 sense_gca_460_from_start 24 39 + 0.1875 0.00555 0.168 ATATCACAAGTCTTAC Rv0818_pal_1 antisense_gca_467_from_start 9 24 - 0.1875 0.00555 0.168 ATATCACAAGTCTTAC Rv0818_pal_1 sense_gca_460_from_start 24 39 - 0.1875 0.00555 0.168 GTAAGACTTGTGATAT Rv0081_nonpal_1 sense_fadE7_118_to_stop 16 30 + -1.32 0.00555 0.435 GCTGGAGTACCCGGT Rv0081_nonpal_1 antisense_fadE7_121_to_stop 8 22 - -1.32 0.00555 0.435 GCTGGAGTACCCGGT Rv0081_nonpal_2 sense_Rv1278_1158_to_stop 19 40 + -28.25 0.00556 0.662 GAGAGGTCGCTGACCTAGCCGC Rv1359_nonpal_1 sense_Rv1461_552_from_start 1 28 + -14.3654 0.00556 0.294 TTTCAAGGAATATTTCGGTACAGTAATC Rv3849_nonpal_1 antisense_mmpL4_1187_to_stop 18 29 - -2.30137 0.00557 0.61 GATGATTTCTGG Rv3849_nonpal_1 sense_mmpL4_1184_to_stop 9 20 + -2.30137 0.00557 0.61 GATGATTTCTGG Rv3849_nonpal_1 1662_up_of_Rv2018 22 33 + -2.30137 0.00557 0.61 TGAAATTGATAC Rv0576_nonpal_1 877_up_of_treZ 2 27 + -0.681818 0.00557 0.132 CGAAGAGTGGGGGGCCTCCAGCCCGT Rv0576_nonpal_1 sense_treZ_467_to_stop 2 27 + -0.681818 0.00557 0.132 CGAAGAGTGGGGGGCCTCCAGCCCGT Rv0576_nonpal_1 antisense_treZ_470_to_stop 11 36 - -0.681818 0.00557 0.132 CGAAGAGTGGGGGGCCTCCAGCCCGT Rv0576_nonpal_1 antisense_treY_785_to_stop 11 36 - -0.681818 0.00557 0.132 CGAAGAGTGGGGGGCCTCCAGCCCGT Rv0576_nonpal_1 880_up_of_treZ 11 36 - -0.681818 0.00557 0.132 CGAAGAGTGGGGGGCCTCCAGCCCGT Rv1776c_nonpal_1 sense_Rv1461_552_from_start 12 17 + 3.75342 0.00557 0.802 ATTTCG Rv1776c_nonpal_1 sense_pyrC_548_to_stop 20 25 + 3.75342 0.00557 0.802 ATTTCG Rv1776c_nonpal_1 antisense_pyrC_541_to_stop 23 28 - 3.75342 0.00557 0.802 ATTTCG Rv1776c_nonpal_1 antisense_Rv1461_559_from_start 31 36 - 3.75342 0.00557 0.802 ATTTCG Rv1776c_nonpal_1 93_up_of_lpqG 33 38 - 3.75342 0.00557 0.802 ATTTCG Rv3681c_nonpal_1 93_up_of_lpqG 19 38 - -1.56962 0.00557 0.394 ATTTCGGGGTACTGGCATCG Rv2642_pal_1 7_up_of_Rv1049 20 40 + -0.0574713 0.00557 0.693 CAGACTCGTGTAGCTACACGT Rv2642_pal_1 7_up_of_Rv1049 20 40 - -0.0574713 0.00557 0.693 ACGTGTAGCTACACGAGTCTG Rv0339c_nonpal_1 sense_rocA_797_to_stop 10 23 + 1.42529 0.00558 1 GTGGGTGGGTACCA Rv0339c_nonpal_1 antisense_rocA_790_to_stop 25 38 - 1.42529 0.00558 1 GTGGGTGGGTACCA Rv0678_pal_1 antisense_treZ_470_to_stop 34 40 + -2.54412 0.00558 0.469 TCGCCCA Rv0678_pal_1 antisense_treY_785_to_stop 34 40 + -2.54412 0.00558 0.469 TCGCCCA Rv0678_pal_1 880_up_of_treZ 34 40 + -2.54412 0.00558 0.469 TCGCCCA Rv0678_pal_1 antisense_treZ_470_to_stop 34 40 - -2.54412 0.00558 0.469 TGGGCGA Rv0678_pal_1 880_up_of_treZ 34 40 - -2.54412 0.00558 0.469 TGGGCGA Rv0678_pal_1 antisense_treY_785_to_stop 34 40 - -2.54412 0.00558 0.469 TGGGCGA Rv1404_pal_1 antisense_mmpL4_1187_to_stop 7 19 + 3.375 0.00558 0.186 CGAATTGGTCTCC Rv1404_pal_1 antisense_mmpL4_1187_to_stop 7 19 - 3.375 0.00558 0.186 GGAGACCAATTCG Rv1404_pal_1 sense_mmpL4_1184_to_stop 19 31 + 3.375 0.00558 0.186 GGAGACCAATTCG Rv1404_pal_1 sense_mmpL4_1184_to_stop 19 31 - 3.375 0.00558 0.186 CGAATTGGTCTCC Rv0981_nonpal_1 37_up_of_Rv2172c 6 33 + -18.6226 0.00558 0.434 CCGAGCCATGCTCCAGCGGTTGATTTGG Rv0981_nonpal_1 sense_mptA_23_from_start 6 33 + -18.6226 0.00558 0.434 CCGAGCCATGCTCCAGCGGTTGATTTGG Rv3124_nonpal_1 10_up_of_Rv1866 5 31 + -17.5673 0.00559 0.665 CGGCTGTTCTGCTGGAGGCACCGATAT Rv1956_nonpal_1 antisense_pyrC_541_to_stop 5 25 - -1.61628 0.00559 0.287 TCGATCACCGCCGAGGTCACC Rv0047c_pal_1 sense_pyrC_548_to_stop 15 26 + 3.87879 0.00559 0.345 AGGGTATTTCGA Rv0047c_pal_1 antisense_pyrC_541_to_stop 22 33 + 3.87879 0.00559 0.345 TCGAAATACCCT Rv0047c_pal_1 sense_pyrC_548_to_stop 15 26 - 3.87879 0.00559 0.345 TCGAAATACCCT Rv0047c_pal_1 antisense_pyrC_541_to_stop 22 33 - 3.87879 0.00559 0.345 AGGGTATTTCGA Rv3574_nonpal_1 antisense_metA_391_from_start 4 18 - -1.25 0.00559 0.255 GTGACCAGGTGCAGG Rv2021c_nonpal_1 antisense_gca_467_from_start 14 34 + -0.493976 0.00559 0.428 ACTTGTGATATTGATACGCCA Rv2021c_nonpal_1 sense_gca_460_from_start 14 34 - -0.493976 0.00559 0.428 ACTTGTGATATTGATACGCCA Rv0022c_pal_1 antisense_Rv2963_530_to_stop 3 24 + 1.59459 0.0056 0.168 AGAAGCTCTGCCAGAACGATTC Rv0022c_pal_1 antisense_Rv2963_530_to_stop 3 24 - 1.59459 0.0056 0.168 GAATCGTTCTGGCAGAGCTTCT Rv2009_nonpal_1 antisense_metA_391_from_start 9 29 + -1.74684 0.0056 0.279 ACCTGGTCACGTATCGAGATC Rv2009_nonpal_1 sense_metA_384_from_start 19 39 - -1.74684 0.0056 0.279 ACCTGGTCACGTATCGAGATC Rv1675c_nonpal_1 sense_cobK_304_from_start 15 35 + -13.1731 0.00561 1 CGTGGGATCCCGGTACCGCCA Rv1675c_nonpal_1 antisense_cobK_311_from_start 13 33 - -13.1731 0.00561 1 CGTGGGATCCCGGTACCGCCA Rv1719_nonpal_1 sense_Rv2038c_183_from_start 3 19 + 1.85526 0.00561 1 ACGCTGGACTGTGGGCG Rv3574_nonpal_1 sense_Rv0674_10_to_stop 3 17 + -1.26471 0.00561 0.255 TGCAACTCAACTCCT Rv3849_pal_1 antisense_Rv3282_217_to_stop 3 10 + 4.54545 0.00561 1 CTGGCCAG Rv3849_pal_1 447_down_of_accE5 3 10 + 4.54545 0.00561 1 CTGGCCAG Rv3849_pal_1 antisense_Rv3282_217_to_stop 3 10 - 4.54545 0.00561 1 CTGGCCAG Rv3849_pal_1 447_down_of_accE5 3 10 - 4.54545 0.00561 1 CTGGCCAG Rv2021c_nonpal_1 antisense_Rv0370c_389_from_start 4 24 - -0.506024 0.00561 0.428 CCCCTCCAGTGCTGCTCATCG Rv2506_nonpal_1 sense_rocA_797_to_stop 4 22 - -5.18085 0.00562 0.53 GGTACCCACCCACTGCCAT Rv0023_nonpal_1 antisense_Rv3282_217_to_stop 15 35 - 2.97183 0.00562 0.16 TTCGGCCTCCGATCTGGAGGC Rv0023_nonpal_1 447_down_of_accE5 15 35 - 2.97183 0.00562 0.16 TTCGGCCTCCGATCTGGAGGC Rv2359_pal_1 sense_bioB_253_to_stop 17 37 + -15.3524 0.00562 0.143 TGGAGGTAATGCCGGTCGGTG Rv2359_pal_1 sense_bioB_253_to_stop 17 37 - -15.3524 0.00562 0.143 CACCGACCGGCATTACCTCCA Rv0691c_pal_1 sense_accA1_598_from_start 4 15 + 2.76812 0.00562 0.188 CGATACGCTATT Rv0691c_pal_1 sense_accA1_598_from_start 4 15 - 2.76812 0.00562 0.188 AATAGCGTATCG Rv0691c_pal_1 antisense_accA1_595_from_start 23 34 + 2.76812 0.00562 0.188 AATAGCGTATCG Rv0691c_pal_1 antisense_accA1_595_from_start 23 34 - 2.76812 0.00562 0.188 CGATACGCTATT Rv0022c_pal_1 sense_mmpL4_1184_to_stop 7 28 + 1.58108 0.00562 0.168 TTGATGATTTCTGGAGACCAAT Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 10 31 + 1.58108 0.00562 0.168 ATTGGTCTCCAGAAATCATCAA Rv0022c_pal_1 sense_mmpL4_1184_to_stop 7 28 - 1.58108 0.00562 0.168 ATTGGTCTCCAGAAATCATCAA Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 10 31 - 1.58108 0.00562 0.168 TTGATGATTTCTGGAGACCAAT Rv2887_nonpal_1 antisense_Rv1461_472_from_start 18 32 + -1.7125 0.00562 0.519 TCCAGATCCTCTCTG Rv2887_nonpal_1 sense_Rv1461_475_from_start 6 20 - -1.7125 0.00562 0.519 TCCAGATCCTCTCTG Rv2989_nonpal_1 antisense_Rv1251c_1309_from_start 3 23 + -2.15789 0.00563 0.662 CGAGGTACAGCGGCTCCAGCG Rv1255c_pal_1 sense_pks6_424_from_start 9 34 + 0.574713 0.00563 0.416 GATAACAGCGTATCCAGATCGTGGGT Rv1255c_pal_1 sense_pks6_423_from_start 9 34 + 0.574713 0.00563 0.416 GATAACAGCGTATCCAGATCGTGGGT Rv1255c_pal_1 antisense_pks6_430_from_start 14 39 + 0.574713 0.00563 0.416 ACCCACGATCTGGATACGCTGTTATC Rv1255c_pal_1 antisense_pks6_431_from_start 14 39 + 0.574713 0.00563 0.416 ACCCACGATCTGGATACGCTGTTATC Rv1255c_pal_1 sense_pks6_423_from_start 9 34 - 0.574713 0.00563 0.416 ACCCACGATCTGGATACGCTGTTATC Rv1255c_pal_1 sense_pks6_424_from_start 9 34 - 0.574713 0.00563 0.416 ACCCACGATCTGGATACGCTGTTATC Rv1255c_pal_1 antisense_pks6_431_from_start 14 39 - 0.574713 0.00563 0.416 GATAACAGCGTATCCAGATCGTGGGT Rv1255c_pal_1 antisense_pks6_430_from_start 14 39 - 0.574713 0.00563 0.416 GATAACAGCGTATCCAGATCGTGGGT Rv0339c_nonpal_1 sense_pyrC_548_to_stop 13 26 + 1.3908 0.00563 1 CCAGGGTATTTCGA Rv0339c_nonpal_1 antisense_pyrC_541_to_stop 22 35 - 1.3908 0.00563 1 CCAGGGTATTTCGA Rv0195_nonpal_1 antisense_Rv2963_530_to_stop 18 31 + -2.37234 0.00563 1 ACGATTCGGGTACC Rv0195_nonpal_1 sense_Rv2963_537_to_stop 17 30 - -2.37234 0.00563 1 ACGATTCGGGTACC Rv1816_nonpal_2 sense_rocA_797_to_stop 5 32 - -44.3462 0.00564 0.756 GGCCGATATTGGTACCCACCCACTGCCA Rv3488_pal_2 sense_bioB_253_to_stop 12 19 + -8.09302 0.00564 0.49 CGACCTGG Rv3488_pal_2 sense_bioB_253_to_stop 12 19 - -8.09302 0.00564 0.49 CCAGGTCG Rv0465c_pal_2 antisense_pks6_431_from_start 7 14 + -0.151899 0.00564 0.957 TTCGTGAA Rv0465c_pal_2 antisense_pks6_430_from_start 7 14 + -0.151899 0.00564 0.957 TTCGTGAA Rv0465c_pal_2 antisense_pks6_430_from_start 7 14 - -0.151899 0.00564 0.957 TTCACGAA Rv0465c_pal_2 antisense_pks6_431_from_start 7 14 - -0.151899 0.00564 0.957 TTCACGAA Rv2887_nonpal_1 10_up_of_Rv1866 2 16 - -1.725 0.00564 0.519 GCAGAACAGCCGTCG Rv0022c_pal_1 37_up_of_Rv2172c 8 29 + 1.56757 0.00565 0.168 GAGCCATGCTCCAGCGGTTGAT Rv0022c_pal_1 sense_mptA_23_from_start 8 29 + 1.56757 0.00565 0.168 GAGCCATGCTCCAGCGGTTGAT Rv0022c_pal_1 37_up_of_Rv2172c 8 29 - 1.56757 0.00565 0.168 ATCAACCGCTGGAGCATGGCTC Rv0022c_pal_1 sense_mptA_23_from_start 8 29 - 1.56757 0.00565 0.168 ATCAACCGCTGGAGCATGGCTC Rv0023_nonpal_1 sense_Rv1461_475_from_start 19 39 + 2.95775 0.00565 0.16 GAGGCTCAAGGAGTCATATTT Rv0302_nonpal_1 sense_accA1_598_from_start 17 31 - 2.63768 0.00566 0.421 CACAAACCGCTCCAG Rv0302_nonpal_1 antisense_accA1_595_from_start 7 21 + 2.63768 0.00566 0.421 CACAAACCGCTCCAG Rv0880_nonpal_1 4992_down_of_Rv3180c 8 31 + -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 8499_up_of_Rv3186 8 31 + -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 3353_up_of_Rv3179 8 31 + -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 10034_up_of_Rv3188 8 31 + -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 13071_down_of_Rv3190c 8 31 + -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 10041_up_of_Rv3188 17 40 - -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 13078_down_of_Rv3190c 17 40 - -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 8506_up_of_Rv3186 17 40 - -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 3360_up_of_Rv3179 17 40 - -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv0880_nonpal_1 4999_down_of_Rv3180c 17 40 - -9.33684 0.00567 0.189 CTACAGTAAACCGATTGGTGTACT Rv1353c_nonpal_1 antisense_PPE34_1661_from_start 6 20 + 3.72727 0.00567 0.274 GTCACGTAATCTGGA Rv1353c_nonpal_1 sense_PPE34_1439_from_start 18 32 - 3.72727 0.00567 0.274 GTCACGTAATCTGGA Rv1353c_nonpal_1 sense_PPE34_1664_from_start 18 32 - 3.72727 0.00567 0.274 GTCACGTAATCTGGA Rv1353c_nonpal_1 sense_PPE34_3066_to_stop 18 32 - 3.72727 0.00567 0.274 GTCACGTAATCTGGA Rv3246c_nonpal_1 antisense_cobK_311_from_start 3 22 + -0.246914 0.00567 0.327 ACCGCGATGATGGCGGTACC Rv1255c_pal_1 antisense_accA1_595_from_start 2 27 + 0.551724 0.00567 0.416 CGCAACACAAACCGCTCCAGGAATAG Rv1255c_pal_1 sense_accA1_598_from_start 11 36 + 0.551724 0.00567 0.416 CTATTCCTGGAGCGGTTTGTGTTGCG Rv1255c_pal_1 antisense_accA1_595_from_start 2 27 - 0.551724 0.00567 0.416 CTATTCCTGGAGCGGTTTGTGTTGCG Rv1255c_pal_1 sense_accA1_598_from_start 11 36 - 0.551724 0.00567 0.416 CGCAACACAAACCGCTCCAGGAATAG Rv1816_nonpal_1 sense_Rv2279_300_to_stop 17 33 - 2.55385 0.00568 0.298 TGTGTACTGAGATCCCC Rv1816_nonpal_1 antisense_Rv2279_293_to_stop 15 31 + 2.55385 0.00568 0.298 TGTGTACTGAGATCCCC Rv2887_pal_1 1662_up_of_Rv2018 3 17 + 0.625 0.00568 0.382 ATGAATCGGCCTTCT Rv2887_pal_1 1662_up_of_Rv2018 3 17 - 0.625 0.00568 0.382 AGAAGGCCGATTCAT Rv0023_pal_2 sense_Rv2038c_183_from_start 19 34 + 2.35065 0.00568 0.341 GTATCCGGATCGGCGA Rv0023_pal_2 sense_Rv2038c_183_from_start 19 34 - 2.35065 0.00568 0.341 TCGCCGATCCGGATAC Rv3133c_nonpal_1 antisense_pyrC_541_to_stop 5 19 + 3.30435 0.00569 0.522 GGTGACCTCGGCGGT Rv3736_pal_1 93_up_of_lpqG 7 21 + 3.76429 0.00569 1 TGTAGGGCCCGTCGA Rv3736_pal_1 93_up_of_lpqG 7 21 - 3.76429 0.00569 1 TCGACGGGCCCTACA Rv0302_nonpal_1 sense_mmpL4_1184_to_stop 6 20 - 2.62319 0.00569 0.421 CCAGAAATCATCAAA Rv0302_nonpal_1 antisense_mmpL4_1187_to_stop 18 32 + 2.62319 0.00569 0.421 CCAGAAATCATCAAA Rv1816_pal_1 sense_Rv1461_475_from_start 2 14 + 3.9931 0.00569 0.212 AGATCAGAGAGGA Rv1816_pal_1 sense_Rv1461_475_from_start 2 14 - 3.9931 0.00569 0.212 TCCTCTCTGATCT Rv1816_pal_1 antisense_Rv1461_472_from_start 24 36 + 3.9931 0.00569 0.212 TCCTCTCTGATCT Rv1816_pal_1 antisense_Rv1461_472_from_start 24 36 - 3.9931 0.00569 0.212 AGATCAGAGAGGA Rv0302_nonpal_2 sense_PPE24_1352_to_stop 4 14 - -2.02564 0.0057 1 GGGTATCGTCA Rv0302_nonpal_2 sense_PPE24_1277_to_stop 4 14 - -2.02564 0.0057 1 GGGTATCGTCA Rv0302_nonpal_2 sense_PPE24_1577_to_stop 4 14 - -2.02564 0.0057 1 GGGTATCGTCA Rv0135c_nonpal_1 sense_pks6_424_from_start 7 17 + -0.984375 0.0057 0.487 GCGATAACAGC Rv0135c_nonpal_1 sense_pks6_423_from_start 7 17 + -0.984375 0.0057 0.487 GCGATAACAGC Rv2506_pal_1 antisense_Rv3282_217_to_stop 11 26 - -1.66316 0.00571 0.374 CGATCTGGAGGCTTAC Rv2506_pal_1 447_down_of_accE5 11 26 - -1.66316 0.00571 0.374 CGATCTGGAGGCTTAC Rv3574_pal_1 4_up_of_Rv1049 3 18 + 2.01449 0.00572 0.289 TAGCTACACGAGTCTG Rv3574_pal_1 4_up_of_Rv1049 3 18 - 2.01449 0.00572 0.289 CAGACTCGTGTAGCTA Rv3574_pal_1 7_up_of_Rv1049 20 35 + 2.01449 0.00572 0.289 CAGACTCGTGTAGCTA Rv3574_pal_1 7_up_of_Rv1049 20 35 - 2.01449 0.00572 0.289 TAGCTACACGAGTCTG Rv1219c_pal_1 antisense_cobK_311_from_start 7 15 + 1.82278 0.00572 0.364 CGATGATGG Rv1219c_pal_1 antisense_cobK_311_from_start 7 15 - 1.82278 0.00572 0.364 CCATCATCG Rv0023_nonpal_1 sense_mmpL4_1184_to_stop 3 23 + 2.92958 0.00572 0.16 GATTTTGATGATTTCTGGAGA Rv0023_nonpal_1 antisense_mmpL4_1187_to_stop 15 35 - 2.92958 0.00572 0.16 GATTTTGATGATTTCTGGAGA Rv3681c_nonpal_1 sense_mmpL4_1184_to_stop 17 36 + -1.67089 0.00573 0.394 CTGGAGACCAATTCGAAGCT Rv3681c_nonpal_1 antisense_mmpL4_1187_to_stop 2 21 - -1.67089 0.00573 0.394 CTGGAGACCAATTCGAAGCT Rv2506_pal_1 447_down_of_accE5 11 26 + -1.67368 0.00573 0.374 GTAAGCCTCCAGATCG Rv2506_pal_1 antisense_Rv3282_217_to_stop 11 26 + -1.67368 0.00573 0.374 GTAAGCCTCCAGATCG Rv1675c_nonpal_1 sense_gca_460_from_start 9 29 + -13.2788 0.00573 1 CATGCTGGCGTATCAATATCA Rv1675c_nonpal_1 antisense_gca_467_from_start 19 39 - -13.2788 0.00573 1 CATGCTGGCGTATCAATATCA Rv0653c_nonpal_1 sense_metA_384_from_start 4 22 + -1.31646 0.00573 0.205 CTCAAGATTTCCGCTGATC Rv2324_nonpal_2 sense_PE_PGRS57_112_from_start 23 37 - -0.614458 0.00573 0.625 CGCCCGCAGCCAGCA Rv2324_nonpal_2 sense_PE_PGRS54_112_from_start 23 37 - -0.614458 0.00573 0.625 CGCCCGCAGCCAGCA Rv3488_nonpal_1 sense_mmpL4_1184_to_stop 2 15 - -4.70588 0.00573 0.367 AATCATCAAAATCC Rv3488_nonpal_1 antisense_mmpL4_1187_to_stop 23 36 + -4.70588 0.00573 0.367 AATCATCAAAATCC Rv3830c_nonpal_1 antisense_metA_391_from_start 12 26 + 0.189189 0.00573 0.949 TGGTCACGTATCGAG Rv3830c_nonpal_1 sense_metA_384_from_start 22 36 - 0.189189 0.00573 0.949 TGGTCACGTATCGAG Rv1359_nonpal_1 sense_Rv1278_1158_to_stop 1 28 + -14.5192 0.00574 0.295 CTGATGCGCTGGCGGCTGGAGAGGTCGC Rv1473A_nonpal_2 sense_Rv0674_10_to_stop 30 37 + -3.17808 0.00574 0.37 AGTGATCT Rv1846c_nonpal_1 447_down_of_accE5 10 31 + -15.6596 0.00574 0.368 GGTAAGCCTCCAGATCGGAGGC Rv1846c_nonpal_1 antisense_Rv3282_217_to_stop 10 31 + -15.6596 0.00574 0.368 GGTAAGCCTCCAGATCGGAGGC Rv0135c_pal_1 43_up_of_Rv3179 9 18 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 6724_up_of_Rv3188 9 18 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 5189_up_of_Rv3186 9 18 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 1682_down_of_Rv3180c 9 18 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 9761_down_of_Rv3190c 9 18 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 6730_up_of_Rv3188 15 24 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 5195_up_of_Rv3186 15 24 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 49_up_of_Rv3179 15 24 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 9767_down_of_Rv3190c 15 24 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 1688_down_of_Rv3180c 15 24 + 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 43_up_of_Rv3179 9 18 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 6724_up_of_Rv3188 9 18 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 5189_up_of_Rv3186 9 18 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 9761_down_of_Rv3190c 9 18 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 1682_down_of_Rv3180c 9 18 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 9760_down_of_Rv3190c 24 33 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 6730_up_of_Rv3188 15 24 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 1681_down_of_Rv3180c 24 33 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 42_up_of_Rv3179 24 33 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 6723_up_of_Rv3188 24 33 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 5195_up_of_Rv3186 15 24 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 5188_up_of_Rv3186 24 33 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 1688_down_of_Rv3180c 15 24 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 49_up_of_Rv3179 15 24 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 9767_down_of_Rv3190c 15 24 - 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 9754_down_of_Rv3190c 30 39 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 6717_up_of_Rv3188 30 39 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 36_up_of_Rv3179 30 39 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 1675_down_of_Rv3180c 30 39 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 5182_up_of_Rv3186 30 39 + 2.76562 0.00575 0.278 GGTGTACTTA Rv0135c_pal_1 1681_down_of_Rv3180c 24 33 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 42_up_of_Rv3179 24 33 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 6723_up_of_Rv3188 24 33 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 5188_up_of_Rv3186 24 33 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 9760_down_of_Rv3190c 24 33 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 36_up_of_Rv3179 30 39 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 6717_up_of_Rv3188 30 39 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 1675_down_of_Rv3180c 30 39 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 5182_up_of_Rv3186 30 39 - 2.76562 0.00575 0.278 TAAGTACACC Rv0135c_pal_1 9754_down_of_Rv3190c 30 39 - 2.76562 0.00575 0.278 TAAGTACACC Rv0818_nonpal_1 sense_Rv1461_552_from_start 12 32 + -6.2234 0.00575 0.496 ATTTCGGTACAGTAATCCCTG Rv0818_nonpal_1 antisense_Rv1461_559_from_start 16 36 - -6.2234 0.00575 0.496 ATTTCGGTACAGTAATCCCTG Rv0576_nonpal_1 sense_Rv2279_300_to_stop 8 33 + -0.795455 0.00575 0.134 ATACGGATAGGGGATCTCAGTACACA Rv0576_nonpal_1 antisense_Rv2279_293_to_stop 15 40 - -0.795455 0.00575 0.134 ATACGGATAGGGGATCTCAGTACACA Rv1776c_nonpal_1 1662_up_of_Rv2018 14 19 + 3.46575 0.00575 0.802 TTCTCC Rv1423_nonpal_1 sense_cobK_304_from_start 3 13 + 1.73913 0.00575 1 TGGCTCGCCCG Rv1674c_pal_1 sense_Rv0674_10_to_stop 16 37 + -0.6875 0.00576 0.118 CTGGAGGTGACATGAGTGATCT Rv1674c_pal_1 sense_Rv0674_10_to_stop 16 37 - -0.6875 0.00576 0.118 AGATCACTCATGTCACCTCCAG Rv1473A_pal_2 antisense_Rv0370c_389_from_start 3 10 + -2.50685 0.00576 0.286 TCGATGAG Rv1473A_pal_2 antisense_Rv0370c_389_from_start 3 10 - -2.50685 0.00576 0.286 CTCATCGA Rv3574_nonpal_2 10034_up_of_Rv3188 1 28 - -41.265 0.00576 0.397 ACACCAATCGGTTTACTGTAGGAGGTCT Rv3574_nonpal_2 8499_up_of_Rv3186 1 28 - -41.265 0.00576 0.397 ACACCAATCGGTTTACTGTAGGAGGTCT Rv3574_nonpal_2 3353_up_of_Rv3179 1 28 - -41.265 0.00576 0.397 ACACCAATCGGTTTACTGTAGGAGGTCT Rv3574_nonpal_2 4992_down_of_Rv3180c 1 28 - -41.265 0.00576 0.397 ACACCAATCGGTTTACTGTAGGAGGTCT Rv3574_nonpal_2 13071_down_of_Rv3190c 1 28 - -41.265 0.00576 0.397 ACACCAATCGGTTTACTGTAGGAGGTCT Rv3574_nonpal_1 antisense_mmpL4_1187_to_stop 24 38 + -1.39706 0.00577 0.259 ATCATCAAAATCCGC Rv1674c_nonpal_1 antisense_Rv1461_416_from_start 22 39 - -9.34043 0.00577 0.357 GAAGCAGAGATTAGTAGC Rv1719_nonpal_1 sense_Rv2038c_183_from_start 3 19 - 1.76316 0.00578 1 CGCCCACAGTCCAGCGT Rv0767c_nonpal_2 93_up_of_lpqG 5 25 + -0.873418 0.00578 0.455 ATTGTAGGGCCCGTCGATGCC Rv3133c_pal_1 antisense_frdA_787_from_start 5 20 + 2.80822 0.00578 1 GAGGTCGTAATCCTGG Rv3133c_pal_1 antisense_frdA_787_from_start 5 20 - 2.80822 0.00578 1 CCAGGATTACGACCTC Rv1675c_pal_1 10_up_of_Rv1866 9 24 + -6.38095 0.00579 1 TGTTCTGCTGGAGGCA Rv1675c_pal_1 10_up_of_Rv1866 9 24 - -6.38095 0.00579 1 TGCCTCCAGCAGAACA Rv3133c_nonpal_1 sense_pyrC_548_to_stop 1 15 + 3.26087 0.00579 0.522 ATGGGCTAAGGACCA Rv2989_nonpal_2 1662_up_of_Rv2018 7 21 + -4.11494 0.00579 1 ATCGGCCTTCTCCAG Rv2887_pal_1 antisense_pks6_430_from_start 14 28 + 0.5625 0.00579 0.382 ACCCACGATCTGGAT Rv2887_pal_1 antisense_pks6_431_from_start 14 28 + 0.5625 0.00579 0.382 ACCCACGATCTGGAT Rv2887_pal_1 sense_pks6_424_from_start 20 34 - 0.5625 0.00579 0.382 ACCCACGATCTGGAT Rv2887_pal_1 sense_pks6_423_from_start 20 34 - 0.5625 0.00579 0.382 ACCCACGATCTGGAT Rv3249c_nonpal_1 antisense_pyrC_541_to_stop 9 19 + 2.39062 0.0058 0.47 ACCTCGGCGGT Rv3249c_nonpal_1 sense_pyrC_548_to_stop 29 39 - 2.39062 0.0058 0.47 ACCTCGGCGGT Rv1816_pal_2 antisense_Rv0370c_389_from_start 7 15 + -2.75342 0.0058 0.422 TGAGCAGCA Rv1816_pal_2 antisense_Rv0370c_389_from_start 7 15 - -2.75342 0.0058 0.422 TGCTGCTCA Rv0023_pal_2 10_up_of_Rv1866 13 28 + 2.28571 0.0058 0.341 CTGCTGGAGGCACCGA Rv0023_pal_2 10_up_of_Rv1866 13 28 - 2.28571 0.0058 0.341 TCGGTGCCTCCAGCAG Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 6 27 + 1.48649 0.00581 0.168 TCGAATTGGTCTCCAGAAATCA Rv0022c_pal_1 sense_mmpL4_1184_to_stop 11 32 + 1.48649 0.00581 0.168 TGATTTCTGGAGACCAATTCGA Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 6 27 - 1.48649 0.00581 0.168 TGATTTCTGGAGACCAATTCGA Rv0022c_pal_1 sense_mmpL4_1184_to_stop 11 32 - 1.48649 0.00581 0.168 TCGAATTGGTCTCCAGAAATCA Rv2021c_pal_1 antisense_PPE24_1570_to_stop 13 27 + 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2021c_pal_1 antisense_PPE24_1270_to_stop 13 27 + 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2021c_pal_1 antisense_PPE24_1345_to_stop 13 27 + 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2021c_pal_1 sense_PPE24_1277_to_stop 21 35 + 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 sense_PPE24_1352_to_stop 21 35 + 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 sense_PPE24_1577_to_stop 21 35 + 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 antisense_PPE24_1570_to_stop 13 27 - 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 antisense_PPE24_1345_to_stop 13 27 - 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 antisense_PPE24_1270_to_stop 13 27 - 3.89655 0.00581 0.784 ATCACAATCGGTGGC Rv2021c_pal_1 sense_PPE24_1577_to_stop 21 35 - 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2021c_pal_1 sense_PPE24_1352_to_stop 21 35 - 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2021c_pal_1 sense_PPE24_1277_to_stop 21 35 - 3.89655 0.00581 0.784 GCCACCGATTGTGAT Rv2887_pal_1 sense_pks6_423_from_start 20 34 + 0.55 0.00582 0.382 ATCCAGATCGTGGGT Rv2887_pal_1 sense_pks6_424_from_start 20 34 + 0.55 0.00582 0.382 ATCCAGATCGTGGGT Rv2887_pal_1 antisense_pks6_431_from_start 14 28 - 0.55 0.00582 0.382 ATCCAGATCGTGGGT Rv2887_pal_1 antisense_pks6_430_from_start 14 28 - 0.55 0.00582 0.382 ATCCAGATCGTGGGT Rv1353c_nonpal_1 antisense_Rv3282_217_to_stop 10 24 + 3.66667 0.00582 0.276 GGTAAGCCTCCAGAT Rv1353c_nonpal_1 447_down_of_accE5 10 24 + 3.66667 0.00582 0.276 GGTAAGCCTCCAGAT Rv1219c_pal_1 antisense_fadE7_121_to_stop 3 11 + 1.78481 0.00582 0.364 GGATGACCG Rv1219c_pal_1 antisense_fadE7_121_to_stop 3 11 - 1.78481 0.00582 0.364 CGGTCATCC Rv1219c_pal_1 sense_fadE7_118_to_stop 27 35 + 1.78481 0.00582 0.364 CGGTCATCC Rv1219c_pal_1 sense_fadE7_118_to_stop 27 35 - 1.78481 0.00582 0.364 GGATGACCG Rv0023_pal_1 sense_PPE24_1577_to_stop 7 14 + -2.41772 0.00582 0.496 CGATACCC Rv0023_pal_1 sense_PPE24_1352_to_stop 7 14 + -2.41772 0.00582 0.496 CGATACCC Rv0023_pal_1 sense_PPE24_1277_to_stop 7 14 + -2.41772 0.00582 0.496 CGATACCC Rv0023_pal_1 sense_PPE24_1577_to_stop 7 14 - -2.41772 0.00582 0.496 GGGTATCG Rv0023_pal_1 sense_PPE24_1352_to_stop 7 14 - -2.41772 0.00582 0.496 GGGTATCG Rv0023_pal_1 sense_PPE24_1277_to_stop 7 14 - -2.41772 0.00582 0.496 GGGTATCG Rv3765c_nonpal_1 sense_Rv0674_10_to_stop 14 33 - -9.90526 0.00582 0.586 CACTCATGTCACCTCCAGGA Rv0465c_pal_2 7_up_of_Rv1049 6 13 + -0.227848 0.00582 0.957 TTTGCCCA Rv0465c_pal_2 7_up_of_Rv1049 6 13 - -0.227848 0.00582 0.957 TGGGCAAA Rv0465c_pal_2 4_up_of_Rv1049 25 32 + -0.227848 0.00582 0.957 TGGGCAAA Rv0465c_pal_2 4_up_of_Rv1049 25 32 - -0.227848 0.00582 0.957 TTTGCCCA Rv3488_nonpal_1 antisense_accA1_595_from_start 22 35 - -4.77941 0.00582 0.367 ACGATACGCTATTC Rv3488_nonpal_1 sense_accA1_598_from_start 3 16 + -4.77941 0.00582 0.367 ACGATACGCTATTC Rv3066_nonpal_1 antisense_PPE24_1570_to_stop 1 20 + -1.25287 0.00583 1 AGGTAGACTAAAGCCACCGA Rv3066_nonpal_1 antisense_PPE24_1345_to_stop 1 20 + -1.25287 0.00583 1 AGGTAGACTAAAGCCACCGA Rv3066_nonpal_1 antisense_PPE24_1270_to_stop 1 20 + -1.25287 0.00583 1 AGGTAGACTAAAGCCACCGA Rv3557c_nonpal_1 sense_pks9_325_to_stop 15 34 + -17.3077 0.00583 0.341 TCTCCAGATGGCTATCGGTT Rv3488_pal_1 sense_pyrC_548_to_stop 16 23 + -2.13235 0.00583 0.334 GGGTATTT Rv3488_pal_1 sense_pyrC_548_to_stop 16 23 - -2.13235 0.00583 0.334 AAATACCC Rv3488_pal_1 antisense_pyrC_541_to_stop 25 32 + -2.13235 0.00583 0.334 AAATACCC Rv3488_pal_1 antisense_pyrC_541_to_stop 25 32 - -2.13235 0.00583 0.334 GGGTATTT Rv1473A_nonpal_2 antisense_mmpL4_1187_to_stop 12 19 - -3.20548 0.00584 0.37 GGAGACCA Rv1473A_nonpal_2 sense_mmpL4_1184_to_stop 19 26 + -3.20548 0.00584 0.37 GGAGACCA Rv0767c_nonpal_1 447_down_of_accE5 3 17 + 2.75714 0.00584 0.445 CTGGCCAGGTAAGCC Rv0767c_nonpal_1 antisense_Rv3282_217_to_stop 3 17 + 2.75714 0.00584 0.445 CTGGCCAGGTAAGCC Rv3736_pal_1 sense_pks9_325_to_stop 17 31 + 3.71429 0.00584 1 TCCAGATGGCTATCG Rv3736_pal_1 sense_pks9_325_to_stop 17 31 - 3.71429 0.00584 1 CGATAGCCATCTGGA Rv0047c_pal_1 antisense_aldA_642_from_start 18 29 + 3.80303 0.00584 0.352 TGGAGGTGACGA Rv0047c_pal_1 antisense_aldA_642_from_start 18 29 - 3.80303 0.00584 0.352 TCGTCACCTCCA Rv2250c_nonpal_1 antisense_Rv1461_472_from_start 1 10 + 2.3913 0.00585 0.44 ATATGACTCC Rv2250c_nonpal_1 sense_Rv1461_475_from_start 28 37 - 2.3913 0.00585 0.44 ATATGACTCC Rv0047c_nonpal_1 antisense_pyrC_541_to_stop 6 20 + 2.53125 0.00585 0.502 GTGACCTCGGCGGTG Rv2359_pal_1 1682_down_of_Rv3180c 6 26 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 9761_down_of_Rv3190c 6 26 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 43_up_of_Rv3179 6 26 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 6724_up_of_Rv3188 6 26 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 5189_up_of_Rv3186 6 26 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 49_up_of_Rv3179 12 32 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 9767_down_of_Rv3190c 12 32 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 6730_up_of_Rv3188 12 32 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 5195_up_of_Rv3186 12 32 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 1688_down_of_Rv3180c 12 32 + -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 1681_down_of_Rv3180c 16 36 + -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 9760_down_of_Rv3190c 16 36 + -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 42_up_of_Rv3179 16 36 + -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 6723_up_of_Rv3188 16 36 + -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 5188_up_of_Rv3186 16 36 + -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 9761_down_of_Rv3190c 6 26 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 43_up_of_Rv3179 6 26 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 6724_up_of_Rv3188 6 26 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 5189_up_of_Rv3186 6 26 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 1682_down_of_Rv3180c 6 26 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 9767_down_of_Rv3190c 12 32 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 6730_up_of_Rv3188 12 32 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 5195_up_of_Rv3186 12 32 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 1688_down_of_Rv3180c 12 32 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 49_up_of_Rv3179 12 32 - -15.5524 0.00585 0.143 TACTGATCGGTGTACTTATAA Rv2359_pal_1 1681_down_of_Rv3180c 16 36 - -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 9760_down_of_Rv3190c 16 36 - -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 42_up_of_Rv3179 16 36 - -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 6723_up_of_Rv3188 16 36 - -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv2359_pal_1 5188_up_of_Rv3186 16 36 - -15.5524 0.00585 0.143 TTATAAGTACACCGATCAGTA Rv0117_nonpal_1 1662_up_of_Rv2018 2 28 + -17.1635 0.00585 0.425 TATGAATCGGCCTTCTCCAGTGAAATT Rv1828_pal_1 49_up_of_Rv3179 2 30 + -4.92553 0.00586 0.21 ACAGTGTCGGTTATAAGTACACCGATCAG Rv1828_pal_1 9767_down_of_Rv3190c 2 30 + -4.92553 0.00586 0.21 ACAGTGTCGGTTATAAGTACACCGATCAG Rv1828_pal_1 6730_up_of_Rv3188 2 30 + -4.92553 0.00586 0.21 ACAGTGTCGGTTATAAGTACACCGATCAG Rv1828_pal_1 5195_up_of_Rv3186 2 30 + -4.92553 0.00586 0.21 ACAGTGTCGGTTATAAGTACACCGATCAG Rv1828_pal_1 1688_down_of_Rv3180c 2 30 + -4.92553 0.00586 0.21 ACAGTGTCGGTTATAAGTACACCGATCAG Rv1828_pal_1 9767_down_of_Rv3190c 2 30 - -4.92553 0.00586 0.21 CTGATCGGTGTACTTATAACCGACACTGT Rv1828_pal_1 1688_down_of_Rv3180c 2 30 - -4.92553 0.00586 0.21 CTGATCGGTGTACTTATAACCGACACTGT Rv1828_pal_1 6730_up_of_Rv3188 2 30 - -4.92553 0.00586 0.21 CTGATCGGTGTACTTATAACCGACACTGT Rv1828_pal_1 5195_up_of_Rv3186 2 30 - -4.92553 0.00586 0.21 CTGATCGGTGTACTTATAACCGACACTGT Rv1828_pal_1 49_up_of_Rv3179 2 30 - -4.92553 0.00586 0.21 CTGATCGGTGTACTTATAACCGACACTGT Rv3681c_pal_1 antisense_Rv1461_416_from_start 20 33 + 2.7619 0.00586 0.46 CAGCTACTAATCTC Rv3681c_pal_1 antisense_Rv1461_416_from_start 20 33 - 2.7619 0.00586 0.46 GAGATTAGTAGCTG Rv2788_nonpal_1 antisense_Rv1461_559_from_start 11 38 + -33.5814 0.00586 0.899 GCCGGCAGGGATTACTGTACCGAAATAT Rv2788_nonpal_1 sense_Rv1461_552_from_start 10 37 - -33.5814 0.00586 0.899 GCCGGCAGGGATTACTGTACCGAAATAT Rv0576_nonpal_1 sense_rocA_797_to_stop 2 27 - -0.863636 0.00586 0.135 ATATTGGTACCCACCCACTGCCATAG Rv3830c_nonpal_1 sense_pks9_325_to_stop 4 18 - 0.108108 0.00586 0.949 GAGACGATTGCGTAG Rv0081_pal_1 sense_Rv2279_300_to_stop 2 17 + 0.573333 0.00586 0.443 TCCACCATACGGATAG Rv0081_pal_1 sense_Rv2279_300_to_stop 2 17 - 0.573333 0.00586 0.443 CTATCCGTATGGTGGA Rv0023_nonpal_1 sense_Rv1461_475_from_start 4 24 + 2.87324 0.00586 0.161 ATCAGAGAGGATCTGGAGGCT Rv0023_nonpal_1 antisense_Rv1461_472_from_start 14 34 - 2.87324 0.00586 0.161 ATCAGAGAGGATCTGGAGGCT Rv3765c_nonpal_1 antisense_aldA_642_from_start 9 28 - -9.94737 0.00587 0.586 CGTCACCTCCAGCAGTCACG Rv2009_pal_1 5189_up_of_Rv3186 2 30 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 9761_down_of_Rv3190c 2 30 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 43_up_of_Rv3179 2 30 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 6724_up_of_Rv3188 2 30 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 1682_down_of_Rv3180c 2 30 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 5195_up_of_Rv3186 8 36 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 1688_down_of_Rv3180c 8 36 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 49_up_of_Rv3179 8 36 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 9767_down_of_Rv3190c 8 36 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 6730_up_of_Rv3188 8 36 + -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 5188_up_of_Rv3186 12 40 + -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 9760_down_of_Rv3190c 12 40 + -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 42_up_of_Rv3179 12 40 + -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 6723_up_of_Rv3188 12 40 + -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 1681_down_of_Rv3180c 12 40 + -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 5189_up_of_Rv3186 2 30 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 1682_down_of_Rv3180c 2 30 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 9761_down_of_Rv3190c 2 30 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 43_up_of_Rv3179 2 30 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 6724_up_of_Rv3188 2 30 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 1688_down_of_Rv3180c 8 36 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 9767_down_of_Rv3190c 8 36 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 49_up_of_Rv3179 8 36 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 6730_up_of_Rv3188 8 36 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 5195_up_of_Rv3186 8 36 - -0.160584 0.00587 0.142 TGTATACTGATCGGTGTACTTATAACCGA Rv2009_pal_1 1681_down_of_Rv3180c 12 40 - -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 5188_up_of_Rv3186 12 40 - -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 9760_down_of_Rv3190c 12 40 - -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 42_up_of_Rv3179 12 40 - -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv2009_pal_1 6723_up_of_Rv3188 12 40 - -0.160584 0.00587 0.142 TCGGTTATAAGTACACCGATCAGTATACA Rv3066_pal_1 10_up_of_Rv1866 9 22 + 1.21591 0.00588 1 TGTTCTGCTGGAGG Rv3066_pal_1 10_up_of_Rv1866 9 22 - 1.21591 0.00588 1 CCTCCAGCAGAACA Rv0981_nonpal_1 3360_up_of_Rv3179 6 33 - -18.9057 0.00588 0.434 AAACCGATTGGTGTACTTTGTGCTTTGA Rv0981_nonpal_1 4999_down_of_Rv3180c 6 33 - -18.9057 0.00588 0.434 AAACCGATTGGTGTACTTTGTGCTTTGA Rv0981_nonpal_1 13078_down_of_Rv3190c 6 33 - -18.9057 0.00588 0.434 AAACCGATTGGTGTACTTTGTGCTTTGA Rv0981_nonpal_1 10041_up_of_Rv3188 6 33 - -18.9057 0.00588 0.434 AAACCGATTGGTGTACTTTGTGCTTTGA Rv0981_nonpal_1 8506_up_of_Rv3186 6 33 - -18.9057 0.00588 0.434 AAACCGATTGGTGTACTTTGTGCTTTGA Rv0767c_nonpal_2 sense_PE_PGRS54_112_from_start 10 30 - -0.936709 0.00588 0.455 AGCCAGCACCTGCGTGGTCGC Rv0767c_nonpal_2 sense_PE_PGRS57_112_from_start 10 30 - -0.936709 0.00588 0.455 AGCCAGCACCTGCGTGGTCGC Rv2887_nonpal_1 10041_up_of_Rv3188 22 36 + -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 4999_down_of_Rv3180c 22 36 + -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 8506_up_of_Rv3186 22 36 + -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 3360_up_of_Rv3179 22 36 + -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 13078_down_of_Rv3190c 22 36 + -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 13071_down_of_Rv3190c 12 26 - -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 4992_down_of_Rv3180c 12 26 - -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 8499_up_of_Rv3186 12 26 - -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 10034_up_of_Rv3188 12 26 - -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv2887_nonpal_1 3353_up_of_Rv3179 12 26 - -1.875 0.00588 0.519 ACCAATCGGTTTACT Rv1956_pal_1 sense_accA1_598_from_start 9 16 + -0.744186 0.00588 0.234 CGCTATTC Rv1956_pal_1 sense_accA1_598_from_start 9 16 - -0.744186 0.00588 0.234 GAATAGCG Rv1956_pal_1 antisense_accA1_595_from_start 22 29 + -0.744186 0.00588 0.234 GAATAGCG Rv1956_pal_1 antisense_accA1_595_from_start 22 29 - -0.744186 0.00588 0.234 CGCTATTC Rv2324_nonpal_2 sense_metA_384_from_start 2 16 + -0.73494 0.00589 0.625 GGCTCAAGATTTCCG Rv0757_pal_1 37_up_of_Rv2172c 8 21 + 3.13924 0.00589 0.719 GAGCCATGCTCCAG Rv0757_pal_1 sense_mptA_23_from_start 8 21 + 3.13924 0.00589 0.719 GAGCCATGCTCCAG Rv0757_pal_1 37_up_of_Rv2172c 8 21 - 3.13924 0.00589 0.719 CTGGAGCATGGCTC Rv0757_pal_1 sense_mptA_23_from_start 8 21 - 3.13924 0.00589 0.719 CTGGAGCATGGCTC Rv0691c_nonpal_2 antisense_Rv1461_416_from_start 7 30 - -41.875 0.0059 0.63 ATTAGTAGCTGGAGTAGCCGCACA Rv0967_pal_1 antisense_pks6_431_from_start 9 15 + -2.89706 0.0059 0.605 CGTGAAC Rv0967_pal_1 antisense_pks6_430_from_start 9 15 + -2.89706 0.0059 0.605 CGTGAAC Rv0967_pal_1 antisense_pks6_431_from_start 9 15 - -2.89706 0.0059 0.605 GTTCACG Rv0967_pal_1 antisense_pks6_430_from_start 9 15 - -2.89706 0.0059 0.605 GTTCACG Rv0967_pal_1 antisense_aldA_642_from_start 31 37 + -2.89706 0.0059 0.605 GTTGACA Rv0967_pal_1 sense_pks6_424_from_start 33 39 + -2.89706 0.0059 0.605 GTTCACG Rv0967_pal_1 sense_pks6_423_from_start 33 39 + -2.89706 0.0059 0.605 GTTCACG Rv0967_pal_1 antisense_aldA_642_from_start 31 37 - -2.89706 0.0059 0.605 TGTCAAC Rv0967_pal_1 sense_pks6_423_from_start 33 39 - -2.89706 0.0059 0.605 CGTGAAC Rv0967_pal_1 sense_pks6_424_from_start 33 39 - -2.89706 0.0059 0.605 CGTGAAC Rv1404_nonpal_1 5182_up_of_Rv3186 5 30 - -0.6375 0.0059 0.101 CGATCAGTATACAAGGAGTCGGCGTG Rv1404_nonpal_1 9754_down_of_Rv3190c 5 30 - -0.6375 0.0059 0.101 CGATCAGTATACAAGGAGTCGGCGTG Rv1404_nonpal_1 1675_down_of_Rv3180c 5 30 - -0.6375 0.0059 0.101 CGATCAGTATACAAGGAGTCGGCGTG Rv1404_nonpal_1 36_up_of_Rv3179 5 30 - -0.6375 0.0059 0.101 CGATCAGTATACAAGGAGTCGGCGTG Rv1404_nonpal_1 6717_up_of_Rv3188 5 30 - -0.6375 0.0059 0.101 CGATCAGTATACAAGGAGTCGGCGTG Rv1473A_pal_1 sense_rocA_797_to_stop 18 29 + 1.27143 0.00591 0.514 GTACCAATATCG Rv1473A_pal_1 antisense_rocA_790_to_stop 19 30 + 1.27143 0.00591 0.514 CGATATTGGTAC Rv1473A_pal_1 sense_rocA_797_to_stop 18 29 - 1.27143 0.00591 0.514 CGATATTGGTAC Rv1473A_pal_1 antisense_rocA_790_to_stop 19 30 - 1.27143 0.00591 0.514 GTACCAATATCG Rv1719_nonpal_2 sense_PE_PGRS57_112_from_start 12 32 + -3.14118 0.00591 1 GACCACGCAGGTGCTGGCTGC Rv1719_nonpal_2 sense_PE_PGRS54_112_from_start 12 32 + -3.14118 0.00591 1 GACCACGCAGGTGCTGGCTGC Rv1473A_nonpal_1 antisense_Rv1461_559_from_start 1 14 - -6.91781 0.00591 0.449 CGGCGATAATAAGT Rv3849_pal_1 sense_PE_PGRS54_112_from_start 1 8 + 4.50649 0.00591 1 GCAGCCAG Rv3849_pal_1 sense_PE_PGRS57_112_from_start 1 8 + 4.50649 0.00591 1 GCAGCCAG Rv3849_pal_1 sense_PE_PGRS57_112_from_start 1 8 - 4.50649 0.00591 1 CTGGCTGC Rv3849_pal_1 sense_PE_PGRS54_112_from_start 1 8 - 4.50649 0.00591 1 CTGGCTGC Rv3849_pal_1 sense_PE_PGRS57_112_from_start 25 32 + 4.50649 0.00591 1 CTGGCTGC Rv3849_pal_1 sense_PE_PGRS54_112_from_start 25 32 + 4.50649 0.00591 1 CTGGCTGC Rv3849_pal_1 sense_PE_PGRS57_112_from_start 25 32 - 4.50649 0.00591 1 GCAGCCAG Rv3849_pal_1 sense_PE_PGRS54_112_from_start 25 32 - 4.50649 0.00591 1 GCAGCCAG Rv3849_pal_1 sense_Rv1278_1158_to_stop 33 40 + 4.50649 0.00591 1 CTAGCCGC Rv3849_pal_1 sense_Rv1278_1158_to_stop 33 40 - 4.50649 0.00591 1 GCGGCTAG Rv3246c_nonpal_1 sense_bioB_253_to_stop 8 27 + -0.395062 0.00591 0.327 TCGCCGACCTGGAGGTAATG Rv3830c_pal_1 1662_up_of_Rv2018 12 27 + 1.37662 0.00592 1 CCTTCTCCAGTGAAAT Rv3830c_pal_1 1662_up_of_Rv2018 12 27 - 1.37662 0.00592 1 ATTTCACTGGAGAAGG Rv1556_pal_1 sense_pks9_325_to_stop 3 18 + -1.21053 0.00592 0.315 ACTACGCAATCGTCTC Rv1556_pal_1 sense_pks9_325_to_stop 3 18 - -1.21053 0.00592 0.315 GAGACGATTGCGTAGT Rv2324_nonpal_1 880_up_of_treZ 5 23 + 3.43478 0.00592 0.364 ACTGAAACGGGCTGGAGGC Rv2324_nonpal_1 antisense_treY_785_to_stop 5 23 + 3.43478 0.00592 0.364 ACTGAAACGGGCTGGAGGC Rv2324_nonpal_1 antisense_treZ_470_to_stop 5 23 + 3.43478 0.00592 0.364 ACTGAAACGGGCTGGAGGC Rv2324_nonpal_1 877_up_of_treZ 15 33 - 3.43478 0.00592 0.364 ACTGAAACGGGCTGGAGGC Rv2324_nonpal_1 sense_treZ_467_to_stop 15 33 - 3.43478 0.00592 0.364 ACTGAAACGGGCTGGAGGC Rv0273c_nonpal_2 sense_PPE34_3066_to_stop 5 30 + -44.8722 0.00592 0.354 TCCCCGGATTCCCTCCAGATTACGTG Rv0273c_nonpal_2 sense_PPE34_1439_from_start 5 30 + -44.8722 0.00592 0.354 TCCCCGGATTCCCTCCAGATTACGTG Rv0273c_nonpal_2 sense_PPE34_1664_from_start 5 30 + -44.8722 0.00592 0.354 TCCCCGGATTCCCTCCAGATTACGTG Rv0273c_nonpal_2 36_up_of_Rv3179 6 31 + -44.8722 0.00592 0.354 ACGCCGACTCCTTGTATACTGATCGG Rv0273c_nonpal_2 5182_up_of_Rv3186 6 31 + -44.8722 0.00592 0.354 ACGCCGACTCCTTGTATACTGATCGG Rv0273c_nonpal_2 9754_down_of_Rv3190c 6 31 + -44.8722 0.00592 0.354 ACGCCGACTCCTTGTATACTGATCGG Rv0273c_nonpal_2 1675_down_of_Rv3180c 6 31 + -44.8722 0.00592 0.354 ACGCCGACTCCTTGTATACTGATCGG Rv0273c_nonpal_2 6717_up_of_Rv3188 6 31 + -44.8722 0.00592 0.354 ACGCCGACTCCTTGTATACTGATCGG Rv0273c_nonpal_2 4_up_of_Rv1049 7 32 + -44.8722 0.00592 0.354 TACACGAGTCTGGAGTAATGGGCAAA Rv0273c_nonpal_2 sense_PPE24_1577_to_stop 13 38 + -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv0273c_nonpal_2 sense_PPE24_1352_to_stop 13 38 + -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv0273c_nonpal_2 sense_PPE24_1277_to_stop 13 38 + -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv0273c_nonpal_2 sense_bioB_253_to_stop 14 39 + -44.8722 0.00592 0.354 ACCTGGAGGTAATGCCGGTCGGTGAC Rv0273c_nonpal_2 antisense_Rv2963_530_to_stop 4 29 - -44.8722 0.00592 0.354 TACCCGAATCGTTCTGGCAGAGCTTC Rv0273c_nonpal_2 antisense_Rv0370c_389_from_start 6 31 - -44.8722 0.00592 0.354 GGACCGACCCCTCCAGTGCTGCTCAT Rv0273c_nonpal_2 7_up_of_Rv1049 6 31 - -44.8722 0.00592 0.354 TACACGAGTCTGGAGTAATGGGCAAA Rv0273c_nonpal_2 antisense_PPE34_1661_from_start 8 33 - -44.8722 0.00592 0.354 TCCCCGGATTCCCTCCAGATTACGTG Rv0273c_nonpal_2 antisense_PPE24_1570_to_stop 10 35 - -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv0273c_nonpal_2 antisense_PPE24_1345_to_stop 10 35 - -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv0273c_nonpal_2 antisense_PPE24_1270_to_stop 10 35 - -44.8722 0.00592 0.354 CCGCGGGTATCACAATCGGTGGCTTT Rv1776c_nonpal_1 sense_pks9_325_to_stop 7 12 - 3.23288 0.00593 0.802 ATTGCG Rv0022c_nonpal_1 1662_up_of_Rv2018 21 35 + 0.835616 0.00593 0.234 GTGAAATTGATACAA Rv1674c_nonpal_1 sense_PPE24_1577_to_stop 20 37 - -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv1674c_nonpal_1 sense_PPE24_1352_to_stop 20 37 - -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv1674c_nonpal_1 sense_PPE24_1277_to_stop 20 37 - -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv1674c_nonpal_1 antisense_PPE24_1345_to_stop 11 28 + -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv1674c_nonpal_1 antisense_PPE24_1570_to_stop 11 28 + -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv1674c_nonpal_1 antisense_PPE24_1270_to_stop 11 28 + -9.46809 0.00593 0.357 AAGCCACCGATTGTGATA Rv2788_nonpal_1 sense_rocA_797_to_stop 7 34 - -33.6628 0.00593 0.899 GCGGCCGATATTGGTACCCACCCACTGC Rv2009_nonpal_1 sense_Rv2038c_183_from_start 19 39 - -1.96203 0.00593 0.279 CGCGCTCGCCGATCCGGATAC Rv2359_nonpal_1 antisense_Rv1461_559_from_start 12 39 + -23.7596 0.00593 0.275 CCGGCAGGGATTACTGTACCGAAATATT Rv2359_nonpal_1 sense_Rv1461_552_from_start 9 36 - -23.7596 0.00593 0.275 CCGGCAGGGATTACTGTACCGAAATATT Rv0767c_nonpal_1 1682_down_of_Rv3180c 2 16 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 9761_down_of_Rv3190c 2 16 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 6724_up_of_Rv3188 2 16 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 43_up_of_Rv3179 2 16 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 5189_up_of_Rv3186 2 16 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 49_up_of_Rv3179 8 22 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 1688_down_of_Rv3180c 8 22 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 6730_up_of_Rv3188 8 22 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 9767_down_of_Rv3190c 8 22 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 5195_up_of_Rv3186 8 22 + 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 9760_down_of_Rv3190c 26 40 - 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 6723_up_of_Rv3188 26 40 - 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 42_up_of_Rv3179 26 40 - 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 5188_up_of_Rv3186 26 40 - 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv0767c_nonpal_1 1681_down_of_Rv3180c 26 40 - 2.71429 0.00594 0.445 TCGGTTATAAGTACA Rv3830c_pal_1 sense_Rv2038c_183_from_start 19 34 + 1.36364 0.00594 1 GTATCCGGATCGGCGA Rv3830c_pal_1 sense_Rv2038c_183_from_start 19 34 - 1.36364 0.00594 1 TCGCCGATCCGGATAC Rv0967_nonpal_1 sense_Rv1278_1158_to_stop 2 22 + 3.77049 0.00594 1 TGATGCGCTGGCGGCTGGAGA Rv2011c_nonpal_1 antisense_Rv2279_293_to_stop 6 24 - 3.41429 0.00594 0.758 TCAGTACACATCGATCCGG Rv2324_nonpal_2 sense_pks9_325_to_stop 3 17 + -0.783133 0.00595 0.625 ACTACGCAATCGTCT Rv0691c_nonpal_1 sense_Rv1461_552_from_start 16 29 - -1.09375 0.00596 0.474 GGATTACTGTACCG Rv0691c_nonpal_1 antisense_Rv1461_559_from_start 19 32 + -1.09375 0.00596 0.474 GGATTACTGTACCG Rv1404_pal_1 sense_Rv1461_552_from_start 6 18 + 3.2125 0.00596 0.186 AGGAATATTTCGG Rv1404_pal_1 sense_Rv1461_552_from_start 6 18 - 3.2125 0.00596 0.186 CCGAAATATTCCT Rv0494_nonpal_2 sense_cobK_304_from_start 24 38 - -8.68421 0.00597 1 TGATGGCGGTACCGG Rv0494_nonpal_2 antisense_cobK_311_from_start 10 24 + -8.68421 0.00597 1 TGATGGCGGTACCGG Rv0302_nonpal_1 447_down_of_accE5 9 23 - 2.50725 0.00597 0.421 TCTGGAGGCTTACCT Rv0302_nonpal_1 antisense_Rv3282_217_to_stop 9 23 - 2.50725 0.00597 0.421 TCTGGAGGCTTACCT Rv0022c_nonpal_1 sense_rocA_797_to_stop 1 15 + 0.808219 0.00597 0.234 CCTATGGCAGTGGGT Rv0023_nonpal_1 antisense_Rv1251c_1309_from_start 8 28 - 2.83099 0.00597 0.162 GAAGGCGCTGGAGCCGCTGTA Rv2250c_pal_1 antisense_accA1_595_from_start 2 8 + -2.97059 0.00598 0.497 CGCAACA Rv2250c_pal_1 antisense_treZ_470_to_stop 7 13 + -2.97059 0.00598 0.497 TGAAACG Rv2250c_pal_1 antisense_treY_785_to_stop 7 13 + -2.97059 0.00598 0.497 TGAAACG Rv2250c_pal_1 880_up_of_treZ 7 13 + -2.97059 0.00598 0.497 TGAAACG Rv2250c_pal_1 antisense_accA1_595_from_start 2 8 - -2.97059 0.00598 0.497 TGTTGCG Rv2250c_pal_1 antisense_treZ_470_to_stop 7 13 - -2.97059 0.00598 0.497 CGTTTCA Rv2250c_pal_1 antisense_treY_785_to_stop 7 13 - -2.97059 0.00598 0.497 CGTTTCA Rv2250c_pal_1 880_up_of_treZ 7 13 - -2.97059 0.00598 0.497 CGTTTCA Rv2250c_pal_1 sense_Rv1461_552_from_start 16 22 + -2.97059 0.00598 0.497 CGGTACA Rv2250c_pal_1 sense_gca_460_from_start 17 23 + -2.97059 0.00598 0.497 CGTATCA Rv2250c_pal_1 sense_Rv1461_552_from_start 16 22 - -2.97059 0.00598 0.497 TGTACCG Rv2250c_pal_1 sense_gca_460_from_start 17 23 - -2.97059 0.00598 0.497 TGATACG Rv2250c_pal_1 sense_treZ_467_to_stop 25 31 + -2.97059 0.00598 0.497 CGTTTCA Rv2250c_pal_1 877_up_of_treZ 25 31 + -2.97059 0.00598 0.497 CGTTTCA Rv2250c_pal_1 antisense_gca_467_from_start 25 31 + -2.97059 0.00598 0.497 TGATACG Rv2250c_pal_1 antisense_Rv1461_559_from_start 26 32 + -2.97059 0.00598 0.497 TGTACCG Rv2250c_pal_1 sense_accA1_598_from_start 30 36 + -2.97059 0.00598 0.497 TGTTGCG Rv2250c_pal_1 sense_treZ_467_to_stop 25 31 - -2.97059 0.00598 0.497 TGAAACG Rv2250c_pal_1 877_up_of_treZ 25 31 - -2.97059 0.00598 0.497 TGAAACG Rv2250c_pal_1 antisense_gca_467_from_start 25 31 - -2.97059 0.00598 0.497 CGTATCA Rv2250c_pal_1 antisense_Rv1461_559_from_start 26 32 - -2.97059 0.00598 0.497 CGGTACA Rv2250c_pal_1 sense_accA1_598_from_start 30 36 - -2.97059 0.00598 0.497 CGCAACA Rv2887_nonpal_1 93_up_of_lpqG 9 23 + -1.9375 0.00598 0.519 TAGGGCCCGTCGATG Rv2887_nonpal_1 antisense_aldA_642_from_start 3 17 - -1.9375 0.00598 0.519 GCAGTCACGCTTTGG Rv0767c_pal_1 sense_Rv2279_300_to_stop 12 23 + 4.0198 0.00599 0.989 GGATAGGGGATC Rv0767c_pal_1 sense_Rv2279_300_to_stop 12 23 - 4.0198 0.00599 0.989 GATCCCCTATCC Rv0767c_pal_1 antisense_Rv2279_293_to_stop 25 36 + 4.0198 0.00599 0.989 GATCCCCTATCC Rv0767c_pal_1 antisense_Rv2279_293_to_stop 25 36 - 4.0198 0.00599 0.989 GGATAGGGGATC Rv0339c_nonpal_2 antisense_treZ_470_to_stop 10 30 + -13.5 0.00599 0.72 AACGGGCTGGAGGCCCCCCAC Rv0339c_nonpal_2 antisense_treY_785_to_stop 10 30 + -13.5 0.00599 0.72 AACGGGCTGGAGGCCCCCCAC Rv0339c_nonpal_2 880_up_of_treZ 10 30 + -13.5 0.00599 0.72 AACGGGCTGGAGGCCCCCCAC Rv0339c_nonpal_2 877_up_of_treZ 8 28 - -13.5 0.00599 0.72 AACGGGCTGGAGGCCCCCCAC Rv0339c_nonpal_2 sense_treZ_467_to_stop 8 28 - -13.5 0.00599 0.72 AACGGGCTGGAGGCCCCCCAC Rv1423_nonpal_1 sense_gca_460_from_start 5 15 - 1.6087 0.00599 1 CAGCATGTCGG Rv1473A_pal_2 antisense_Rv2279_293_to_stop 7 14 + -2.63014 0.006 0.291 CGGATCGA Rv1473A_pal_2 antisense_Rv2279_293_to_stop 7 14 - -2.63014 0.006 0.291 TCGATCCG Rv0302_nonpal_1 antisense_Rv2963_530_to_stop 13 27 - 2.49275 0.006 0.421 CCCGAATCGTTCTGG Rv0302_nonpal_1 sense_Rv2963_537_to_stop 21 35 + 2.49275 0.006 0.421 CCCGAATCGTTCTGG Rv0767c_nonpal_1 sense_Rv1278_1158_to_stop 21 35 - 2.68571 0.006 0.445 TAGGTCAGCGACCTC Rv2887_nonpal_1 1662_up_of_Rv2018 16 30 - -1.95 0.006 0.519 TCAATTTCACTGGAG Rv2887_nonpal_1 4_up_of_Rv1049 26 40 - -1.95 0.006 0.519 GCCGCCCCTTTGCCC Rv1219c_nonpal_2 antisense_Rv1461_416_from_start 6 33 + -44.7949 0.006 0.535 TTGTGCGGCTACTCCAGCTACTAATCTC Rv0135c_nonpal_2 sense_bioB_253_to_stop 5 32 + -26.0638 0.00601 0.464 CGTTCGCCGACCTGGAGGTAATGCCGGT Rv2011c_nonpal_1 sense_pks6_424_from_start 12 30 + 3.38571 0.00602 0.758 AACAGCGTATCCAGATCGT Rv2011c_nonpal_1 sense_pks6_423_from_start 12 30 + 3.38571 0.00602 0.758 AACAGCGTATCCAGATCGT Rv2011c_nonpal_1 antisense_pks6_431_from_start 18 36 - 3.38571 0.00602 0.758 AACAGCGTATCCAGATCGT Rv2011c_nonpal_1 antisense_pks6_430_from_start 18 36 - 3.38571 0.00602 0.758 AACAGCGTATCCAGATCGT Rv1956_pal_1 10041_up_of_Rv3188 14 21 + -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 4999_down_of_Rv3180c 14 21 + -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 8506_up_of_Rv3186 14 21 + -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 13078_down_of_Rv3190c 14 21 + -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 3360_up_of_Rv3179 14 21 + -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 13078_down_of_Rv3190c 14 21 - -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 4999_down_of_Rv3180c 14 21 - -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 3360_up_of_Rv3179 14 21 - -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 10041_up_of_Rv3188 14 21 - -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 8506_up_of_Rv3186 14 21 - -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 13071_down_of_Rv3190c 27 34 + -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 4992_down_of_Rv3180c 27 34 + -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 8499_up_of_Rv3186 27 34 + -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 10034_up_of_Rv3188 27 34 + -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 3353_up_of_Rv3179 27 34 + -0.860465 0.00602 0.234 GTACTTTG Rv1956_pal_1 4992_down_of_Rv3180c 27 34 - -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 8499_up_of_Rv3186 27 34 - -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 13071_down_of_Rv3190c 27 34 - -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 3353_up_of_Rv3179 27 34 - -0.860465 0.00602 0.234 CAAAGTAC Rv1956_pal_1 10034_up_of_Rv3188 27 34 - -0.860465 0.00602 0.234 CAAAGTAC Rv0081_nonpal_1 sense_PPE24_1577_to_stop 2 16 + -1.64 0.00602 0.448 GCTGACGATACCCGC Rv0081_nonpal_1 sense_PPE24_1352_to_stop 2 16 + -1.64 0.00602 0.448 GCTGACGATACCCGC Rv0081_nonpal_1 sense_PPE24_1277_to_stop 2 16 + -1.64 0.00602 0.448 GCTGACGATACCCGC Rv2021c_nonpal_1 antisense_PPE24_1570_to_stop 15 35 + -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv2021c_nonpal_1 antisense_PPE24_1345_to_stop 15 35 + -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv2021c_nonpal_1 antisense_PPE24_1270_to_stop 15 35 + -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv2021c_nonpal_1 sense_PPE24_1352_to_stop 13 33 - -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv2021c_nonpal_1 sense_PPE24_1577_to_stop 13 33 - -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv2021c_nonpal_1 sense_PPE24_1277_to_stop 13 33 - -0.771084 0.00602 0.428 CACCGATTGTGATACCCGCGG Rv1353c_pal_1 sense_accA1_598_from_start 13 23 + 4.60606 0.00604 0.334 ATTCCTGGAGC Rv1353c_pal_1 antisense_accA1_595_from_start 15 25 + 4.60606 0.00604 0.334 GCTCCAGGAAT Rv1353c_pal_1 sense_accA1_598_from_start 13 23 - 4.60606 0.00604 0.334 GCTCCAGGAAT Rv1353c_pal_1 antisense_accA1_595_from_start 15 25 - 4.60606 0.00604 0.334 ATTCCTGGAGC Rv3574_nonpal_1 antisense_Rv2963_530_to_stop 18 32 + -1.61765 0.00604 0.261 ACGATTCGGGTACCC Rv3574_nonpal_1 1662_up_of_Rv2018 21 35 + -1.61765 0.00604 0.261 GTGAAATTGATACAA Rv3574_nonpal_1 sense_Rv2963_537_to_stop 16 30 - -1.61765 0.00604 0.261 ACGATTCGGGTACCC Rv3849_nonpal_1 sense_accA1_598_from_start 27 38 + -2.68493 0.00604 0.648 TTGTGTTGCGGC Rv0324_pal_1 antisense_pyrC_541_to_stop 16 27 + -1.35802 0.00604 0.879 CGGTGATCGAAA Rv0324_pal_1 sense_pyrC_548_to_stop 21 32 + -1.35802 0.00604 0.879 TTTCGATCACCG Rv0324_pal_1 antisense_pyrC_541_to_stop 16 27 - -1.35802 0.00604 0.879 TTTCGATCACCG Rv0324_pal_1 sense_pyrC_548_to_stop 21 32 - -1.35802 0.00604 0.879 CGGTGATCGAAA Rv1828_pal_1 sense_bioB_253_to_stop 7 35 + -5.04255 0.00604 0.21 TTCGCCGACCTGGAGGTAATGCCGGTCGG Rv1828_pal_1 sense_bioB_253_to_stop 7 35 - -5.04255 0.00604 0.21 CCGACCGGCATTACCTCCAGGTCGGCGAA Rv3133c_nonpal_1 sense_Rv0674_10_to_stop 21 35 + 3.15942 0.00604 0.531 GGTGACATGAGTGAT Rv1828_nonpal_1 sense_Rv1461_475_from_start 6 29 + -10.7234 0.00604 0.407 CAGAGAGGATCTGGAGGCTCAAGG Rv1828_nonpal_1 antisense_Rv1461_472_from_start 9 32 - -10.7234 0.00604 0.407 CAGAGAGGATCTGGAGGCTCAAGG Rv0324_nonpal_1 antisense_Rv1461_416_from_start 24 31 + -3.13235 0.00605 0.42 TACTAATC Rv0023_pal_2 antisense_Rv1461_559_from_start 3 18 + 2.15584 0.00605 0.341 TTATTATCGCCGGCAG Rv0023_pal_2 antisense_Rv1461_559_from_start 3 18 - 2.15584 0.00605 0.341 CTGCCGGCGATAATAA Rv3676_nonpal_1 antisense_Rv2279_293_to_stop 10 30 - -13.9135 0.00605 1 GGGATCTCAGTACACATCGAT Rv3676_nonpal_1 sense_Rv2279_300_to_stop 18 38 + -13.9135 0.00605 1 GGGATCTCAGTACACATCGAT Rv3765c_nonpal_1 sense_gca_460_from_start 9 28 - -10.0947 0.00605 0.586 GATATTGATACGCCAGCATG Rv3765c_nonpal_1 antisense_gca_467_from_start 20 39 + -10.0947 0.00605 0.586 GATATTGATACGCCAGCATG Rv0135c_nonpal_1 sense_gca_460_from_start 21 31 + -1.28125 0.00606 0.487 TCAATATCACA Rv0135c_nonpal_1 antisense_gca_467_from_start 17 27 - -1.28125 0.00606 0.487 TCAATATCACA Rv2989_nonpal_1 antisense_gca_467_from_start 6 26 - -2.48684 0.00606 0.662 CAATATCACAAGTCTTACGGC Rv2989_nonpal_1 sense_Rv2279_300_to_stop 6 26 - -2.48684 0.00606 0.662 TGAGATCCCCTATCCGTATGG Rv1473A_nonpal_1 sense_pks6_424_from_start 21 34 + -7.0411 0.00606 0.449 TCCAGATCGTGGGT Rv1473A_nonpal_1 sense_pks6_423_from_start 21 34 + -7.0411 0.00606 0.449 TCCAGATCGTGGGT Rv1473A_nonpal_1 antisense_pks6_431_from_start 14 27 - -7.0411 0.00606 0.449 TCCAGATCGTGGGT Rv1473A_nonpal_1 antisense_pks6_430_from_start 14 27 - -7.0411 0.00606 0.449 TCCAGATCGTGGGT Rv0135c_nonpal_2 sense_accA1_598_from_start 9 36 + -26.1277 0.00608 0.464 CGCTATTCCTGGAGCGGTTTGTGTTGCG Rv0135c_nonpal_2 antisense_accA1_595_from_start 2 29 - -26.1277 0.00608 0.464 CGCTATTCCTGGAGCGGTTTGTGTTGCG Rv2324_nonpal_2 antisense_fadE7_121_to_stop 3 17 - -0.879518 0.00609 0.625 AGTACCCGGTCATCC Rv2324_nonpal_2 sense_fadE7_118_to_stop 21 35 + -0.879518 0.00609 0.625 AGTACCCGGTCATCC Rv0081_pal_1 8499_up_of_Rv3186 10 25 + 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 3353_up_of_Rv3179 10 25 + 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 13071_down_of_Rv3190c 10 25 + 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 4992_down_of_Rv3180c 10 25 + 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 10034_up_of_Rv3188 10 25 + 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 3360_up_of_Rv3179 23 38 + 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 13078_down_of_Rv3190c 23 38 + 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 10041_up_of_Rv3188 23 38 + 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 4999_down_of_Rv3180c 23 38 + 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 8506_up_of_Rv3186 23 38 + 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 3353_up_of_Rv3179 10 25 - 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 13071_down_of_Rv3190c 10 25 - 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 4992_down_of_Rv3180c 10 25 - 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 10034_up_of_Rv3188 10 25 - 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 8499_up_of_Rv3186 10 25 - 0.453333 0.0061 0.443 CCAATCGGTTTACTGT Rv0081_pal_1 10041_up_of_Rv3188 23 38 - 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 4999_down_of_Rv3180c 23 38 - 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 13078_down_of_Rv3190c 23 38 - 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 8506_up_of_Rv3186 23 38 - 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0081_pal_1 3360_up_of_Rv3179 23 38 - 0.453333 0.0061 0.443 ACAGTAAACCGATTGG Rv0465c_nonpal_1 sense_pyrC_548_to_stop 6 29 - -18.2299 0.0061 0.793 TGATCGAAATACCCTGGTCCTTAG Rv0494_nonpal_1 antisense_frdA_787_from_start 5 24 - -3.40741 0.0061 1 ACCTCCAGGATTACGACCTC Rv0576_nonpal_1 antisense_Rv2963_530_to_stop 10 35 + -1.01136 0.0061 0.138 CTGCCAGAACGATTCGGGTACCCATG Rv0576_nonpal_1 sense_Rv2963_537_to_stop 13 38 - -1.01136 0.0061 0.138 CTGCCAGAACGATTCGGGTACCCATG Rv1404_nonpal_1 antisense_PPE24_1570_to_stop 13 38 - -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv1404_nonpal_1 antisense_PPE24_1345_to_stop 13 38 - -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv1404_nonpal_1 antisense_PPE24_1270_to_stop 13 38 - -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv1404_nonpal_1 sense_PPE24_1577_to_stop 10 35 + -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv1404_nonpal_1 sense_PPE24_1352_to_stop 10 35 + -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv1404_nonpal_1 sense_PPE24_1277_to_stop 10 35 + -0.75 0.0061 0.101 TACCCGCGGGTATCACAATCGGTGGC Rv0767c_nonpal_1 sense_pyrC_548_to_stop 2 16 - 2.64286 0.0061 0.445 CTGGTCCTTAGCCCA Rv2324_nonpal_2 sense_Rv1278_1158_to_stop 7 21 - -0.891566 0.0061 0.625 CTCCAGCCGCCAGCG Rv2887_nonpal_1 6730_up_of_Rv3188 6 20 - -2.0125 0.00611 0.519 TACTTATAACCGACA Rv2887_nonpal_1 1688_down_of_Rv3180c 6 20 - -2.0125 0.00611 0.519 TACTTATAACCGACA Rv2887_nonpal_1 5195_up_of_Rv3186 6 20 - -2.0125 0.00611 0.519 TACTTATAACCGACA Rv2887_nonpal_1 49_up_of_Rv3179 6 20 - -2.0125 0.00611 0.519 TACTTATAACCGACA Rv2887_nonpal_1 9767_down_of_Rv3190c 6 20 - -2.0125 0.00611 0.519 TACTTATAACCGACA Rv0691c_pal_2 antisense_gca_467_from_start 17 25 + -2.24051 0.00611 0.593 TGTGATATT Rv0691c_pal_2 sense_gca_460_from_start 23 31 + -2.24051 0.00611 0.593 AATATCACA Rv0691c_pal_2 antisense_gca_467_from_start 17 25 - -2.24051 0.00611 0.593 AATATCACA Rv0691c_pal_2 sense_gca_460_from_start 23 31 - -2.24051 0.00611 0.593 TGTGATATT Rv0135c_pal_1 antisense_frdA_787_from_start 8 17 + 2.40625 0.00611 0.278 GTCGTAATCC Rv0135c_pal_1 antisense_frdA_787_from_start 8 17 - 2.40625 0.00611 0.278 GGATTACGAC Rv2374c_nonpal_1 antisense_accA1_595_from_start 8 35 - -12.9135 0.00612 0.497 ACGATACGCTATTCCTGGAGCGGTTTGT Rv2374c_nonpal_1 sense_accA1_598_from_start 3 30 + -12.9135 0.00612 0.497 ACGATACGCTATTCCTGGAGCGGTTTGT Rv1473A_nonpal_2 antisense_pyrC_541_to_stop 7 14 - -3.32877 0.00612 0.381 CGAGGTCA Rv0023_nonpal_2 antisense_metA_391_from_start 11 38 + -40.0192 0.00612 0.411 CTGGTCACGTATCGAGATCAGCGGAAAT Rv0023_nonpal_2 sense_metA_384_from_start 10 37 - -40.0192 0.00612 0.411 CTGGTCACGTATCGAGATCAGCGGAAAT Rv0135c_nonpal_1 sense_fadE7_118_to_stop 8 18 + -1.34375 0.00612 0.487 GGGATATCGCT Rv0135c_nonpal_1 antisense_fadE7_121_to_stop 20 30 - -1.34375 0.00612 0.487 GGGATATCGCT Rv1828_pal_1 sense_Rv0674_10_to_stop 7 35 + -5.09574 0.00613 0.21 ACTCAACTCCTGGAGGTGACATGAGTGAT Rv1828_pal_1 sense_Rv0674_10_to_stop 7 35 - -5.09574 0.00613 0.21 ATCACTCATGTCACCTCCAGGAGTTGAGT Rv1219c_nonpal_1 1682_down_of_Rv3180c 9 23 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 43_up_of_Rv3179 9 23 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 5189_up_of_Rv3186 9 23 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 6724_up_of_Rv3188 9 23 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 9761_down_of_Rv3190c 9 23 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 49_up_of_Rv3179 15 29 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 9767_down_of_Rv3190c 15 29 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 6730_up_of_Rv3188 15 29 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 5195_up_of_Rv3186 15 29 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 1688_down_of_Rv3180c 15 29 + -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 1681_down_of_Rv3180c 19 33 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 42_up_of_Rv3179 19 33 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 9760_down_of_Rv3190c 19 33 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 6723_up_of_Rv3188 19 33 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 5188_up_of_Rv3186 19 33 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 9754_down_of_Rv3190c 25 39 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 1675_down_of_Rv3180c 25 39 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 36_up_of_Rv3179 25 39 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 6717_up_of_Rv3188 25 39 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1219c_nonpal_1 5182_up_of_Rv3186 25 39 - -0.936709 0.00613 0.599 TAAGTACACCGATCA Rv1956_nonpal_1 8499_up_of_Rv3186 13 33 + -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 3353_up_of_Rv3179 13 33 + -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 10034_up_of_Rv3188 13 33 + -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 4992_down_of_Rv3180c 13 33 + -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 13071_down_of_Rv3190c 13 33 + -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 13078_down_of_Rv3190c 15 35 - -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 10041_up_of_Rv3188 15 35 - -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 4999_down_of_Rv3180c 15 35 - -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 8506_up_of_Rv3186 15 35 - -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv1956_nonpal_1 3360_up_of_Rv3179 15 35 - -1.96512 0.00613 0.287 GTAAACCGATTGGTGTACTTT Rv0602c_pal_1 4_up_of_Rv1049 7 14 + -2.1519 0.00613 0.161 TACACGAG Rv0602c_pal_1 4_up_of_Rv1049 7 14 - -2.1519 0.00613 0.161 CTCGTGTA Rv0602c_pal_1 7_up_of_Rv1049 24 31 + -2.1519 0.00613 0.161 CTCGTGTA Rv0602c_pal_1 7_up_of_Rv1049 24 31 - -2.1519 0.00613 0.161 TACACGAG Rv2359_pal_1 antisense_cobK_311_from_start 1 21 + -15.781 0.00613 0.143 ATACCGCGATGATGGCGGTAC Rv2359_pal_1 antisense_cobK_311_from_start 1 21 - -15.781 0.00613 0.143 GTACCGCCATCATCGCGGTAT Rv0135c_nonpal_1 10_up_of_Rv1866 24 34 - -1.35938 0.00614 0.487 ACCATATCGGT Rv0022c_pal_1 sense_accA1_598_from_start 7 28 + 1.32432 0.00614 0.169 TACGCTATTCCTGGAGCGGTTT Rv0022c_pal_1 antisense_accA1_595_from_start 10 31 + 1.32432 0.00614 0.169 AAACCGCTCCAGGAATAGCGTA Rv0022c_pal_1 sense_accA1_598_from_start 7 28 - 1.32432 0.00614 0.169 AAACCGCTCCAGGAATAGCGTA Rv0022c_pal_1 antisense_accA1_595_from_start 10 31 - 1.32432 0.00614 0.169 TACGCTATTCCTGGAGCGGTTT Rv2009_pal_1 antisense_fadE7_121_to_stop 1 29 + -0.291971 0.00616 0.142 CCGGATGACCGGGTACTCCAGCGATATCC Rv2009_pal_1 sense_metA_384_from_start 8 36 + -0.291971 0.00616 0.142 AGATTTCCGCTGATCTCGATACGTGACCA Rv2009_pal_1 sense_fadE7_118_to_stop 9 37 + -0.291971 0.00616 0.142 GGATATCGCTGGAGTACCCGGTCATCCGG Rv2009_pal_1 antisense_metA_391_from_start 12 40 + -0.291971 0.00616 0.142 TGGTCACGTATCGAGATCAGCGGAAATCT Rv2009_pal_1 antisense_fadE7_121_to_stop 1 29 - -0.291971 0.00616 0.142 GGATATCGCTGGAGTACCCGGTCATCCGG Rv2009_pal_1 sense_metA_384_from_start 8 36 - -0.291971 0.00616 0.142 TGGTCACGTATCGAGATCAGCGGAAATCT Rv2009_pal_1 sense_fadE7_118_to_stop 9 37 - -0.291971 0.00616 0.142 CCGGATGACCGGGTACTCCAGCGATATCC Rv2009_pal_1 antisense_metA_391_from_start 12 40 - -0.291971 0.00616 0.142 AGATTTCCGCTGATCTCGATACGTGACCA Rv1049_pal_1 sense_pks6_424_from_start 1 15 + 1.86667 0.00616 1 AAGTGTGCGATAACA Rv1049_pal_1 sense_pks6_423_from_start 1 15 + 1.86667 0.00616 1 AAGTGTGCGATAACA Rv1049_pal_1 sense_pks6_424_from_start 1 15 - 1.86667 0.00616 1 TGTTATCGCACACTT Rv1049_pal_1 sense_pks6_423_from_start 1 15 - 1.86667 0.00616 1 TGTTATCGCACACTT Rv1956_nonpal_1 antisense_metA_391_from_start 5 25 - -1.98837 0.00617 0.287 TCGATACGTGACCAGGTGCAG Rv0767c_nonpal_1 4_up_of_Rv1049 5 19 - 2.61429 0.00617 0.445 CCAGACTCGTGTAGC Rv0767c_nonpal_1 7_up_of_Rv1049 19 33 + 2.61429 0.00617 0.445 CCAGACTCGTGTAGC Rv0195_nonpal_1 93_up_of_lpqG 4 17 + -2.7234 0.00617 1 CATTGTAGGGCCCG Rv0047c_nonpal_1 9767_down_of_Rv3190c 4 18 - 2.375 0.00617 0.502 CTTATAACCGACACT Rv0047c_nonpal_1 49_up_of_Rv3179 4 18 - 2.375 0.00617 0.502 CTTATAACCGACACT Rv0047c_nonpal_1 6730_up_of_Rv3188 4 18 - 2.375 0.00617 0.502 CTTATAACCGACACT Rv0047c_nonpal_1 1688_down_of_Rv3180c 4 18 - 2.375 0.00617 0.502 CTTATAACCGACACT Rv0047c_nonpal_1 5195_up_of_Rv3186 4 18 - 2.375 0.00617 0.502 CTTATAACCGACACT Rv1674c_nonpal_1 antisense_Rv0370c_389_from_start 2 19 + -9.67021 0.00618 0.357 ATCGATGAGCAGCACTGG Rv3736_nonpal_1 antisense_Rv2279_293_to_stop 1 15 + 2.82609 0.00619 0.626 CTGAACCGGATCGAT Rv0967_nonpal_2 antisense_pks6_431_from_start 2 22 + -18.6277 0.00619 1 CAGCATTCGTGAACCCACGAT Rv0967_nonpal_2 antisense_pks6_430_from_start 2 22 + -18.6277 0.00619 1 CAGCATTCGTGAACCCACGAT Rv3249c_pal_1 sense_gca_460_from_start 1 12 + 3.95385 0.00619 0.329 GCCACCGACATG Rv3249c_pal_1 sense_gca_460_from_start 1 12 - 3.95385 0.00619 0.329 CATGTCGGTGGC Rv3557c_nonpal_1 sense_bioB_253_to_stop 19 38 - -17.5962 0.00619 0.341 TCACCGACCGGCATTACCTC Rv1049_nonpal_2 1662_up_of_Rv2018 6 20 + -0.0666667 0.0062 0.522 AATCGGCCTTCTCCA Rv1956_pal_1 5188_up_of_Rv3186 13 20 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 9760_down_of_Rv3190c 13 20 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 42_up_of_Rv3179 13 20 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 6723_up_of_Rv3188 13 20 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 1681_down_of_Rv3180c 13 20 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 5182_up_of_Rv3186 19 26 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 1675_down_of_Rv3180c 19 26 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 9754_down_of_Rv3190c 19 26 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 6717_up_of_Rv3188 19 26 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 36_up_of_Rv3179 19 26 + -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 9760_down_of_Rv3190c 13 20 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 42_up_of_Rv3179 13 20 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 6723_up_of_Rv3188 13 20 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 1681_down_of_Rv3180c 13 20 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 5188_up_of_Rv3186 13 20 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 9761_down_of_Rv3190c 22 29 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 1682_down_of_Rv3180c 22 29 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 43_up_of_Rv3179 22 29 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 5189_up_of_Rv3186 22 29 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 6724_up_of_Rv3188 22 29 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 5182_up_of_Rv3186 19 26 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 9754_down_of_Rv3190c 19 26 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 36_up_of_Rv3179 19 26 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 6717_up_of_Rv3188 19 26 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 1675_down_of_Rv3180c 19 26 - -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 1688_down_of_Rv3180c 28 35 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 9767_down_of_Rv3190c 28 35 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 49_up_of_Rv3179 28 35 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 6730_up_of_Rv3188 28 35 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 5195_up_of_Rv3186 28 35 + -0.895349 0.0062 0.234 CAGTATAC Rv1956_pal_1 9761_down_of_Rv3190c 22 29 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 1682_down_of_Rv3180c 22 29 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 43_up_of_Rv3179 22 29 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 6724_up_of_Rv3188 22 29 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 5189_up_of_Rv3186 22 29 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 9767_down_of_Rv3190c 28 35 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 49_up_of_Rv3179 28 35 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 6730_up_of_Rv3188 28 35 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 5195_up_of_Rv3186 28 35 - -0.895349 0.0062 0.234 GTATACTG Rv1956_pal_1 1688_down_of_Rv3180c 28 35 - -0.895349 0.0062 0.234 GTATACTG Rv0981_nonpal_1 antisense_pks6_431_from_start 10 37 + -19.2075 0.00621 0.434 GTGAACCCACGATCTGGATACGCTGTTA Rv0981_nonpal_1 antisense_pks6_430_from_start 10 37 + -19.2075 0.00621 0.434 GTGAACCCACGATCTGGATACGCTGTTA Rv0981_nonpal_1 sense_pks6_424_from_start 11 38 - -19.2075 0.00621 0.434 GTGAACCCACGATCTGGATACGCTGTTA Rv0981_nonpal_1 sense_pks6_423_from_start 11 38 - -19.2075 0.00621 0.434 GTGAACCCACGATCTGGATACGCTGTTA Rv2250c_nonpal_1 sense_bioB_253_to_stop 18 27 + 2.15942 0.00622 0.459 GGAGGTAATG Rv1556_nonpal_1 antisense_treZ_470_to_stop 1 17 - -7.76596 0.00622 0.702 AGCCCGTTTCAGTTCTT Rv1556_nonpal_1 antisense_treY_785_to_stop 1 17 - -7.76596 0.00622 0.702 AGCCCGTTTCAGTTCTT Rv1556_nonpal_1 880_up_of_treZ 1 17 - -7.76596 0.00622 0.702 AGCCCGTTTCAGTTCTT Rv1556_nonpal_1 sense_treZ_467_to_stop 21 37 + -7.76596 0.00622 0.702 AGCCCGTTTCAGTTCTT Rv1556_nonpal_1 877_up_of_treZ 21 37 + -7.76596 0.00622 0.702 AGCCCGTTTCAGTTCTT Rv0678_nonpal_1 7_up_of_Rv1049 4 18 - 3.39062 0.00623 0.291 AGTAATGGGCAAAGG Rv0678_nonpal_1 4_up_of_Rv1049 20 34 + 3.39062 0.00623 0.291 AGTAATGGGCAAAGG Rv3133c_nonpal_1 antisense_mmpL4_1187_to_stop 24 38 - 3.08696 0.00623 0.531 GCGGATTTTGATGAT Rv2359_pal_1 sense_Rv2963_537_to_stop 12 32 + -15.8571 0.00623 0.143 GCATGGGTACCCGAATCGTTC Rv2359_pal_1 antisense_Rv2963_530_to_stop 16 36 + -15.8571 0.00623 0.143 GAACGATTCGGGTACCCATGC Rv2359_pal_1 sense_Rv2963_537_to_stop 12 32 - -15.8571 0.00623 0.143 GAACGATTCGGGTACCCATGC Rv2359_pal_1 antisense_Rv2963_530_to_stop 16 36 - -15.8571 0.00623 0.143 GCATGGGTACCCGAATCGTTC Rv3849_nonpal_2 sense_Rv2038c_183_from_start 13 40 + -17.3953 0.00623 1 GTGGGCGTATCCGGATCGGCGAGCGCGA Rv0047c_nonpal_1 sense_bioB_253_to_stop 12 26 - 2.34375 0.00624 0.502 ATTACCTCCAGGTCG Rv0981_nonpal_2 antisense_rocA_790_to_stop 11 31 + -4.94737 0.00624 0.491 GTAGCGGCCGATATTGGTACC Rv0981_nonpal_2 sense_rocA_797_to_stop 17 37 - -4.94737 0.00624 0.491 GTAGCGGCCGATATTGGTACC Rv1353c_nonpal_1 sense_gca_460_from_start 12 26 + 3.5 0.00624 0.29 GCTGGCGTATCAATA Rv1353c_nonpal_1 antisense_gca_467_from_start 22 36 - 3.5 0.00624 0.29 GCTGGCGTATCAATA Rv3830c_nonpal_2 43_up_of_Rv3179 13 39 + -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 6724_up_of_Rv3188 13 39 + -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 1682_down_of_Rv3180c 13 39 + -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 5189_up_of_Rv3186 13 39 + -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 9761_down_of_Rv3190c 13 39 + -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 1681_down_of_Rv3180c 3 29 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 42_up_of_Rv3179 3 29 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 6723_up_of_Rv3188 3 29 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 5188_up_of_Rv3186 3 29 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 9760_down_of_Rv3190c 3 29 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 9754_down_of_Rv3190c 9 35 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 36_up_of_Rv3179 9 35 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 6717_up_of_Rv3188 9 35 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 1675_down_of_Rv3180c 9 35 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv3830c_nonpal_2 5182_up_of_Rv3186 9 35 - -25.1154 0.00625 0.528 TACACCGATCAGTATACAAGGAGTCGG Rv1423_pal_1 sense_accA1_598_from_start 3 14 + 3.42466 0.00625 1 ACGATACGCTAT Rv1423_pal_1 sense_accA1_598_from_start 3 14 - 3.42466 0.00625 1 ATAGCGTATCGT Rv1423_pal_1 antisense_accA1_595_from_start 24 35 + 3.42466 0.00625 1 ATAGCGTATCGT Rv1423_pal_1 antisense_accA1_595_from_start 24 35 - 3.42466 0.00625 1 ACGATACGCTAT Rv3246c_nonpal_1 sense_Rv2963_537_to_stop 15 34 + -0.592593 0.00625 0.327 TGGGTACCCGAATCGTTCTG Rv3246c_nonpal_1 antisense_Rv2963_530_to_stop 14 33 - -0.592593 0.00625 0.327 TGGGTACCCGAATCGTTCTG Rv0195_nonpal_1 sense_rocA_797_to_stop 21 34 + -2.7766 0.00626 1 CCAATATCGGCCGC Rv0195_nonpal_1 antisense_rocA_790_to_stop 14 27 - -2.7766 0.00626 1 CCAATATCGGCCGC Rv0047c_pal_1 sense_gca_460_from_start 5 16 + 3.66667 0.00626 0.364 CCGACATGCTGG Rv0047c_pal_1 sense_gca_460_from_start 5 16 - 3.66667 0.00626 0.364 CCAGCATGTCGG Rv1033c_nonpal_1 447_down_of_accE5 20 34 + -4.17722 0.00626 0.66 CAGATCGGAGGCCGA Rv1033c_nonpal_1 antisense_Rv3282_217_to_stop 20 34 + -4.17722 0.00626 0.66 CAGATCGGAGGCCGA Rv0472c_nonpal_1 9761_down_of_Rv3190c 10 20 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 43_up_of_Rv3179 10 20 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 6724_up_of_Rv3188 10 20 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 1682_down_of_Rv3180c 10 20 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 5189_up_of_Rv3186 10 20 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 3360_up_of_Rv3179 16 26 - -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 9767_down_of_Rv3190c 16 26 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 13078_down_of_Rv3190c 16 26 - -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 1688_down_of_Rv3180c 16 26 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 49_up_of_Rv3179 16 26 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 10041_up_of_Rv3188 16 26 - -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 8506_up_of_Rv3186 16 26 - -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 6730_up_of_Rv3188 16 26 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 4999_down_of_Rv3180c 16 26 - -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 5195_up_of_Rv3186 16 26 - -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 5188_up_of_Rv3186 22 32 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 3353_up_of_Rv3179 22 32 + -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 13071_down_of_Rv3190c 22 32 + -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 9760_down_of_Rv3190c 22 32 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 1681_down_of_Rv3180c 22 32 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 8499_up_of_Rv3186 22 32 + -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 4992_down_of_Rv3180c 22 32 + -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 10034_up_of_Rv3188 22 32 + -4.875 0.00627 0.247 TTGGTGTACTT Rv0472c_nonpal_1 6723_up_of_Rv3188 22 32 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 42_up_of_Rv3179 22 32 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 5182_up_of_Rv3186 28 38 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 9754_down_of_Rv3190c 28 38 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 1675_down_of_Rv3180c 28 38 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 6717_up_of_Rv3188 28 38 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 36_up_of_Rv3179 28 38 + -4.875 0.00627 0.247 TCGGTGTACTT Rv0472c_nonpal_1 7_up_of_Rv1049 30 40 + -4.875 0.00627 0.247 TAGCTACACGT Rv0767c_nonpal_2 sense_mmpL4_1184_to_stop 19 39 + -1.17722 0.00627 0.458 GGAGACCAATTCGAAGCTATT Rv0678_nonpal_1 antisense_Rv1461_472_from_start 12 26 + 3.375 0.00627 0.291 TGAGCCTCCAGATCC Rv0678_nonpal_1 sense_Rv1461_475_from_start 12 26 - 3.375 0.00627 0.291 TGAGCCTCCAGATCC Rv2359_nonpal_1 sense_rocA_797_to_stop 1 28 + -24.0769 0.00627 0.281 CCTATGGCAGTGGGTGGGTACCAATATC Rv1776c_nonpal_1 antisense_PPE34_1661_from_start 6 11 + 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 antisense_metA_391_from_start 14 19 + 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 antisense_aldA_642_from_start 9 14 - 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 sense_PPE34_1664_from_start 27 32 - 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 sense_PPE34_1439_from_start 27 32 - 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 sense_PPE34_3066_to_stop 27 32 - 3.05479 0.00627 0.802 GTCACG Rv1776c_nonpal_1 sense_metA_384_from_start 29 34 - 3.05479 0.00627 0.802 GTCACG Rv0273c_nonpal_1 antisense_pks6_431_from_start 3 27 - 1.25 0.00627 0.969 TCCAGATCGTGGGTTCACGAATGCT Rv0273c_nonpal_1 antisense_pks6_430_from_start 3 27 - 1.25 0.00627 0.969 TCCAGATCGTGGGTTCACGAATGCT Rv2324_pal_1 sense_bioB_253_to_stop 8 22 + 0.883117 0.00627 1 TCGCCGACCTGGAGG Rv2324_pal_1 sense_bioB_253_to_stop 8 22 - 0.883117 0.00627 1 CCTCCAGGTCGGCGA Rv0023_nonpal_1 antisense_pyrC_541_to_stop 2 22 + 2.71831 0.00628 0.164 GGGGGTGACCTCGGCGGTGAT Rv3849_nonpal_2 sense_rocA_797_to_stop 6 33 + -17.4419 0.00628 1 GGCAGTGGGTGGGTACCAATATCGGCCG Rv1990c_nonpal_1 antisense_Rv1461_472_from_start 4 14 + 3.18462 0.00629 1 TGACTCCTTGA Rv1990c_nonpal_1 sense_Rv1461_475_from_start 24 34 - 3.18462 0.00629 1 TGACTCCTTGA Rv1219c_nonpal_2 sense_Rv1278_1158_to_stop 7 34 + -45.094 0.00629 0.535 CGCTGGCGGCTGGAGAGGTCGCTGACCT Rv0767c_nonpal_2 antisense_fadE7_121_to_stop 4 24 + -1.18987 0.00629 0.458 GATGACCGGGTACTCCAGCGA Rv0767c_nonpal_2 sense_fadE7_118_to_stop 14 34 - -1.18987 0.00629 0.458 GATGACCGGGTACTCCAGCGA Rv1675c_pal_1 sense_Rv1278_1158_to_stop 18 33 + -6.74286 0.00629 1 GGAGAGGTCGCTGACC Rv1675c_pal_1 sense_Rv1278_1158_to_stop 18 33 - -6.74286 0.00629 1 GGTCAGCGACCTCTCC Rv1556_pal_1 antisense_rocA_790_to_stop 10 25 + -1.43158 0.00629 0.315 GGTAGCGGCCGATATT Rv1556_pal_1 sense_rocA_797_to_stop 23 38 + -1.43158 0.00629 0.315 AATATCGGCCGCTACC Rv1556_pal_1 antisense_rocA_790_to_stop 10 25 - -1.43158 0.00629 0.315 AATATCGGCCGCTACC Rv1556_pal_1 sense_rocA_797_to_stop 23 38 - -1.43158 0.00629 0.315 GGTAGCGGCCGATATT Rv0602c_nonpal_1 5189_up_of_Rv3186 13 24 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 9761_down_of_Rv3190c 13 24 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 1682_down_of_Rv3180c 13 24 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 43_up_of_Rv3179 13 24 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 6724_up_of_Rv3188 13 24 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 5195_up_of_Rv3186 19 30 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 1688_down_of_Rv3180c 19 30 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 9767_down_of_Rv3190c 19 30 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 49_up_of_Rv3179 19 30 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 6730_up_of_Rv3188 19 30 + -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 5188_up_of_Rv3186 18 29 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 9760_down_of_Rv3190c 18 29 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 42_up_of_Rv3179 18 29 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 6723_up_of_Rv3188 18 29 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 1681_down_of_Rv3180c 18 29 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 5182_up_of_Rv3186 24 35 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 36_up_of_Rv3179 24 35 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 1675_down_of_Rv3180c 24 35 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 9754_down_of_Rv3190c 24 35 - -1.41096 0.0063 0.481 TACACCGATCAG Rv0602c_nonpal_1 6717_up_of_Rv3188 24 35 - -1.41096 0.0063 0.481 TACACCGATCAG Rv3488_nonpal_1 antisense_frdA_787_from_start 4 17 - -5.14706 0.0063 0.391 GGATTACGACCTCG Rv0967_nonpal_1 sense_bioB_253_to_stop 8 28 - 3.63934 0.0063 1 GCATTACCTCCAGGTCGGCGA Rv0047c_nonpal_1 sense_pks9_325_to_stop 14 28 - 2.3125 0.0063 0.502 TAGCCATCTGGAGAC Rv2009_nonpal_1 sense_mmpL4_1184_to_stop 11 31 + -2.18987 0.0063 0.279 TGATTTCTGGAGACCAATTCG Rv2009_nonpal_1 antisense_mmpL4_1187_to_stop 7 27 - -2.18987 0.0063 0.279 TGATTTCTGGAGACCAATTCG Rv0880_nonpal_1 antisense_Rv1461_559_from_start 2 25 + -9.85263 0.00631 0.189 CTTATTATCGCCGGCAGGGATTAC Rv0081_nonpal_2 antisense_Rv3282_217_to_stop 12 33 + -29.0096 0.00631 0.701 TAAGCCTCCAGATCGGAGGCCG Rv0081_nonpal_2 447_down_of_accE5 12 33 + -29.0096 0.00631 0.701 TAAGCCTCCAGATCGGAGGCCG Rv1473A_nonpal_2 sense_bioB_253_to_stop 12 19 - -3.38356 0.00631 0.381 CCAGGTCG Rv1473A_nonpal_2 sense_Rv2963_537_to_stop 28 35 - -3.38356 0.00631 0.381 CCAGAACG Rv1473A_nonpal_2 antisense_Rv2963_530_to_stop 13 20 + -3.38356 0.00631 0.381 CCAGAACG Rv0678_nonpal_1 antisense_frdA_787_from_start 6 20 - 3.35938 0.00631 0.291 CCAGGATTACGACCT Rv0324_nonpal_1 antisense_PPE24_1570_to_stop 15 22 + -3.22059 0.00632 0.42 CACCGATT Rv0324_nonpal_1 antisense_PPE24_1345_to_stop 15 22 + -3.22059 0.00632 0.42 CACCGATT Rv0324_nonpal_1 antisense_PPE24_1270_to_stop 15 22 + -3.22059 0.00632 0.42 CACCGATT Rv0324_nonpal_1 10_up_of_Rv1866 23 30 + -3.22059 0.00632 0.42 CACCGATA Rv0324_nonpal_1 sense_PPE24_1352_to_stop 26 33 - -3.22059 0.00632 0.42 CACCGATT Rv0324_nonpal_1 sense_PPE24_1577_to_stop 26 33 - -3.22059 0.00632 0.42 CACCGATT Rv0324_nonpal_1 sense_PPE24_1277_to_stop 26 33 - -3.22059 0.00632 0.42 CACCGATT Rv1994c_nonpal_1 sense_Rv2038c_183_from_start 5 19 - 2.41096 0.00632 0.258 CGCCCACAGTCCAGC Rv0135c_pal_1 sense_pks6_423_from_start 7 16 + 2.23438 0.00632 0.278 GCGATAACAG Rv0135c_pal_1 sense_pks6_424_from_start 7 16 + 2.23438 0.00632 0.278 GCGATAACAG Rv0135c_pal_1 sense_pks6_424_from_start 7 16 - 2.23438 0.00632 0.278 CTGTTATCGC Rv0135c_pal_1 sense_pks6_423_from_start 7 16 - 2.23438 0.00632 0.278 CTGTTATCGC Rv0494_nonpal_2 sense_mptA_23_from_start 12 26 - -8.98947 0.00632 1 AACCGCTGGAGCATG Rv0494_nonpal_2 37_up_of_Rv2172c 12 26 - -8.98947 0.00632 1 AACCGCTGGAGCATG Rv0275c_nonpal_1 antisense_mmpL4_1187_to_stop 9 34 + -15.4038 0.00633 0.222 AATTGGTCTCCAGAAATCATCAAAAT Rv0275c_nonpal_1 sense_mmpL4_1184_to_stop 4 29 - -15.4038 0.00633 0.222 AATTGGTCTCCAGAAATCATCAAAAT Rv1556_nonpal_1 sense_Rv2038c_183_from_start 8 24 + -7.85106 0.00633 0.702 GGACTGTGGGCGTATCC Rv1049_nonpal_2 sense_mmpL4_1184_to_stop 1 15 - -0.16 0.00634 0.522 AATCATCAAAATCCG Rv1049_nonpal_2 antisense_mmpL4_1187_to_stop 23 37 + -0.16 0.00634 0.522 AATCATCAAAATCCG Rv3416_nonpal_1 42_up_of_Rv3179 15 39 + -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 6723_up_of_Rv3188 15 39 + -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 1681_down_of_Rv3180c 15 39 + -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 5188_up_of_Rv3186 15 39 + -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 9760_down_of_Rv3190c 15 39 + -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 6724_up_of_Rv3188 3 27 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 5189_up_of_Rv3186 3 27 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 9761_down_of_Rv3190c 3 27 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 43_up_of_Rv3179 3 27 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 1682_down_of_Rv3180c 3 27 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 5195_up_of_Rv3186 9 33 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 9767_down_of_Rv3190c 9 33 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 49_up_of_Rv3179 9 33 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 1688_down_of_Rv3180c 9 33 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv3416_nonpal_1 6730_up_of_Rv3188 9 33 - -8.96907 0.00634 0.484 ATACTGATCGGTGTACTTATAACCG Rv1956_nonpal_1 sense_gca_460_from_start 7 27 + -2.09302 0.00634 0.29 GACATGCTGGCGTATCAATAT Rv0117_nonpal_1 antisense_Rv1461_416_from_start 3 29 + -17.5865 0.00635 0.447 GTATTGTGCGGCTACTCCAGCTACTAA Rv0273c_pal_1 6723_up_of_Rv3188 3 18 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 42_up_of_Rv3179 3 18 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 1681_down_of_Rv3180c 3 18 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 5188_up_of_Rv3186 3 18 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 9760_down_of_Rv3190c 3 18 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 6717_up_of_Rv3188 9 24 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 36_up_of_Rv3179 9 24 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 9754_down_of_Rv3190c 9 24 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 5182_up_of_Rv3186 9 24 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 1675_down_of_Rv3180c 9 24 + 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 1681_down_of_Rv3180c 3 18 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 42_up_of_Rv3179 3 18 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 9760_down_of_Rv3190c 3 18 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 5188_up_of_Rv3186 3 18 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 6723_up_of_Rv3188 3 18 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 sense_Rv0674_10_to_stop 22 37 + 0 0.00635 0.442 GTGACATGAGTGATCT Rv0273c_pal_1 1682_down_of_Rv3180c 24 39 + 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 6724_up_of_Rv3188 24 39 + 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 5182_up_of_Rv3186 9 24 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 6717_up_of_Rv3188 9 24 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 43_up_of_Rv3179 24 39 + 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 36_up_of_Rv3179 9 24 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 9761_down_of_Rv3190c 24 39 + 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 5189_up_of_Rv3186 24 39 + 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 1675_down_of_Rv3180c 9 24 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 9754_down_of_Rv3190c 9 24 - 0 0.00635 0.442 GTATACAAGGAGTCGG Rv0273c_pal_1 sense_Rv0674_10_to_stop 22 37 - 0 0.00635 0.442 AGATCACTCATGTCAC Rv0273c_pal_1 1682_down_of_Rv3180c 24 39 - 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 6724_up_of_Rv3188 24 39 - 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 43_up_of_Rv3179 24 39 - 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 9761_down_of_Rv3190c 24 39 - 0 0.00635 0.442 CCGACTCCTTGTATAC Rv0273c_pal_1 5189_up_of_Rv3186 24 39 - 0 0.00635 0.442 CCGACTCCTTGTATAC Rv1404_nonpal_1 93_up_of_lpqG 3 28 + -0.8875 0.00636 0.101 GCATTGTAGGGCCCGTCGATGCCAGT Rv3249c_nonpal_1 antisense_Rv1251c_1309_from_start 30 40 + 2.07812 0.00636 0.47 AGCTGAACGAG Rv0135c_nonpal_2 antisense_pks6_431_from_start 4 31 - -26.4043 0.00636 0.464 CGTATCCAGATCGTGGGTTCACGAATGC Rv0135c_nonpal_2 antisense_pks6_430_from_start 4 31 - -26.4043 0.00636 0.464 CGTATCCAGATCGTGGGTTCACGAATGC Rv2250c_nonpal_1 sense_metA_384_from_start 10 19 - 2.07246 0.00636 0.459 CAGCGGAAAT Rv2250c_nonpal_1 antisense_metA_391_from_start 29 38 + 2.07246 0.00636 0.459 CAGCGGAAAT Rv1473A_pal_2 sense_Rv1278_1158_to_stop 28 35 + -2.72603 0.00637 0.291 CTGACCTA Rv1473A_pal_2 sense_Rv1278_1158_to_stop 28 35 - -2.72603 0.00637 0.291 TAGGTCAG Rv0047c_nonpal_1 sense_Rv1461_475_from_start 26 40 - 2.28125 0.00637 0.502 AAAATATGACTCCTT Rv0691c_pal_1 sense_mmpL4_1184_to_stop 6 17 + 2.28986 0.00637 0.206 TTTGATGATTTC Rv0691c_pal_1 sense_mmpL4_1184_to_stop 6 17 - 2.28986 0.00637 0.206 GAAATCATCAAA Rv0691c_pal_1 antisense_mmpL4_1187_to_stop 21 32 + 2.28986 0.00637 0.206 GAAATCATCAAA Rv0691c_pal_1 antisense_mmpL4_1187_to_stop 21 32 - 2.28986 0.00637 0.206 TTTGATGATTTC Rv1816_nonpal_1 43_up_of_Rv3179 16 32 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 1682_down_of_Rv3180c 16 32 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 6724_up_of_Rv3188 16 32 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 5189_up_of_Rv3186 16 32 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 9761_down_of_Rv3190c 16 32 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 6730_up_of_Rv3188 22 38 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 5195_up_of_Rv3186 22 38 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 1688_down_of_Rv3180c 22 38 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 9767_down_of_Rv3190c 22 38 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 49_up_of_Rv3179 22 38 - 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 6723_up_of_Rv3188 10 26 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 42_up_of_Rv3179 10 26 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 5188_up_of_Rv3186 10 26 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 9760_down_of_Rv3190c 10 26 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 1681_down_of_Rv3180c 10 26 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 9754_down_of_Rv3190c 16 32 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 1675_down_of_Rv3180c 16 32 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 6717_up_of_Rv3188 16 32 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 36_up_of_Rv3179 16 32 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv1816_nonpal_1 5182_up_of_Rv3186 16 32 + 2.24615 0.00637 0.298 CTTGTATACTGATCGGT Rv3830c_nonpal_1 sense_Rv2963_537_to_stop 9 23 + -0.202703 0.00638 0.957 GCGGCATGGGTACCC Rv3830c_nonpal_1 antisense_Rv2963_530_to_stop 25 39 - -0.202703 0.00638 0.957 GCGGCATGGGTACCC Rv0757_pal_1 sense_Rv1461_552_from_start 5 18 + 2.93671 0.00638 0.719 AAGGAATATTTCGG Rv0757_pal_1 sense_Rv1461_552_from_start 5 18 - 2.93671 0.00638 0.719 CCGAAATATTCCTT Rv1473A_nonpal_1 sense_pyrC_548_to_stop 15 28 + -7.28767 0.00638 0.449 AGGGTATTTCGATC Rv1473A_nonpal_1 antisense_pyrC_541_to_stop 20 33 - -7.28767 0.00638 0.449 AGGGTATTTCGATC Rv0678_pal_2 sense_PPE34_3066_to_stop 6 21 + 0.48 0.00638 0.31 CCCCGGATTCCCTCCA Rv0678_pal_2 sense_PPE34_1664_from_start 6 21 + 0.48 0.00638 0.31 CCCCGGATTCCCTCCA Rv0678_pal_2 sense_PPE34_1439_from_start 6 21 + 0.48 0.00638 0.31 CCCCGGATTCCCTCCA Rv0678_pal_2 10_up_of_Rv1866 14 29 + 0.48 0.00638 0.31 TGCTGGAGGCACCGAT Rv0678_pal_2 antisense_PPE34_1661_from_start 17 32 + 0.48 0.00638 0.31 TGGAGGGAATCCGGGG Rv0678_pal_2 sense_PPE34_3066_to_stop 6 21 - 0.48 0.00638 0.31 TGGAGGGAATCCGGGG Rv0678_pal_2 sense_PPE34_1664_from_start 6 21 - 0.48 0.00638 0.31 TGGAGGGAATCCGGGG Rv0678_pal_2 sense_PPE34_1439_from_start 6 21 - 0.48 0.00638 0.31 TGGAGGGAATCCGGGG Rv0678_pal_2 10_up_of_Rv1866 14 29 - 0.48 0.00638 0.31 ATCGGTGCCTCCAGCA Rv0678_pal_2 antisense_PPE34_1661_from_start 17 32 - 0.48 0.00638 0.31 CCCCGGATTCCCTCCA Rv0339c_nonpal_2 sense_PE_PGRS54_112_from_start 16 36 - -13.8269 0.00639 0.72 GCCCGCAGCCAGCACCTGCGT Rv0339c_nonpal_2 sense_PE_PGRS57_112_from_start 16 36 - -13.8269 0.00639 0.72 GCCCGCAGCCAGCACCTGCGT Rv2359_pal_1 sense_pyrC_548_to_stop 7 27 + -15.981 0.00639 0.143 TAAGGACCAGGGTATTTCGAT Rv2359_pal_1 sense_pyrC_548_to_stop 7 27 - -15.981 0.00639 0.143 ATCGAAATACCCTGGTCCTTA Rv3765c_nonpal_1 sense_pks6_424_from_start 4 23 - -10.3579 0.00639 0.586 GGATACGCTGTTATCGCACA Rv3765c_nonpal_1 sense_pks6_423_from_start 4 23 - -10.3579 0.00639 0.586 GGATACGCTGTTATCGCACA Rv1473A_nonpal_2 antisense_fadE7_121_to_stop 22 29 - -3.45205 0.00639 0.381 GGATATCG Rv1473A_nonpal_2 sense_fadE7_118_to_stop 9 16 + -3.45205 0.00639 0.381 GGATATCG Rv1353c_nonpal_1 1662_up_of_Rv2018 25 39 - 3.43939 0.0064 0.293 GATCTTGTATCAATT Rv1219c_nonpal_2 sense_accA1_598_from_start 12 39 + -45.1966 0.0064 0.535 TATTCCTGGAGCGGTTTGTGTTGCGGCC Rv1255c_pal_1 sense_Rv1461_475_from_start 5 30 + 0.183908 0.0064 0.416 TCAGAGAGGATCTGGAGGCTCAAGGA Rv1255c_pal_1 antisense_Rv1461_472_from_start 8 33 + 0.183908 0.0064 0.416 TCCTTGAGCCTCCAGATCCTCTCTGA Rv1255c_pal_1 sense_Rv1461_475_from_start 5 30 - 0.183908 0.0064 0.416 TCCTTGAGCCTCCAGATCCTCTCTGA Rv1255c_pal_1 antisense_Rv1461_472_from_start 8 33 - 0.183908 0.0064 0.416 TCAGAGAGGATCTGGAGGCTCAAGGA Rv1956_pal_1 antisense_frdA_787_from_start 4 11 + -1.30233 0.0064 0.234 CGAGGTCG Rv1956_pal_1 antisense_frdA_787_from_start 4 11 - -1.30233 0.0064 0.234 CGACCTCG Rv1404_nonpal_1 antisense_rocA_790_to_stop 3 28 + -0.9125 0.0064 0.101 TAGCTATGGTAGCGGCCGATATTGGT Rv0022c_nonpal_1 sense_Rv2279_300_to_stop 4 18 - 0.534247 0.00641 0.242 CCTATCCGTATGGTG Rv2359_nonpal_1 antisense_gca_467_from_start 6 33 + -24.2019 0.00641 0.281 GCCGTAAGACTTGTGATATTGATACGCC Rv1846c_nonpal_1 sense_pks9_325_to_stop 14 35 - -16.234 0.00641 0.39 AAACCGATAGCCATCTGGAGAC Rv1816_nonpal_1 antisense_Rv3282_217_to_stop 19 35 - 2.23077 0.00641 0.298 TTCGGCCTCCGATCTGG Rv1816_nonpal_1 447_down_of_accE5 19 35 - 2.23077 0.00641 0.298 TTCGGCCTCCGATCTGG Rv2642_nonpal_1 antisense_treZ_470_to_stop 10 34 + -5.67442 0.00641 0.254 AACGGGCTGGAGGCCCCCCACTCTT Rv2642_nonpal_1 antisense_treY_785_to_stop 10 34 + -5.67442 0.00641 0.254 AACGGGCTGGAGGCCCCCCACTCTT Rv2642_nonpal_1 880_up_of_treZ 10 34 + -5.67442 0.00641 0.254 AACGGGCTGGAGGCCCCCCACTCTT Rv2642_nonpal_1 877_up_of_treZ 4 28 - -5.67442 0.00641 0.254 AACGGGCTGGAGGCCCCCCACTCTT Rv2642_nonpal_1 sense_treZ_467_to_stop 4 28 - -5.67442 0.00641 0.254 AACGGGCTGGAGGCCCCCCACTCTT Rv2324_nonpal_2 sense_pks9_325_to_stop 6 20 + -1.10843 0.00641 0.639 ACGCAATCGTCTCCA Rv1994c_nonpal_1 1662_up_of_Rv2018 25 39 - 2.36986 0.00641 0.258 GATCTTGTATCAATT Rv1816_nonpal_2 880_up_of_treZ 9 36 - -45.2404 0.00642 0.756 CGAAGAGTGGGGGGCCTCCAGCCCGTTT Rv1816_nonpal_2 antisense_treZ_470_to_stop 9 36 - -45.2404 0.00642 0.756 CGAAGAGTGGGGGGCCTCCAGCCCGTTT Rv1816_nonpal_2 antisense_treY_785_to_stop 9 36 - -45.2404 0.00642 0.756 CGAAGAGTGGGGGGCCTCCAGCCCGTTT Rv1816_nonpal_2 sense_treZ_467_to_stop 2 29 + -45.2404 0.00642 0.756 CGAAGAGTGGGGGGCCTCCAGCCCGTTT Rv1816_nonpal_2 877_up_of_treZ 2 29 + -45.2404 0.00642 0.756 CGAAGAGTGGGGGGCCTCCAGCCCGTTT Rv3249c_nonpal_2 447_down_of_accE5 11 25 - 1.24 0.00643 0.614 GATCTGGAGGCTTAC Rv3249c_nonpal_2 antisense_Rv3282_217_to_stop 11 25 - 1.24 0.00643 0.614 GATCTGGAGGCTTAC Rv1556_pal_1 antisense_Rv3282_217_to_stop 10 25 + -1.50526 0.00643 0.315 GGTAAGCCTCCAGATC Rv1556_pal_1 447_down_of_accE5 10 25 + -1.50526 0.00643 0.315 GGTAAGCCTCCAGATC Rv1556_pal_1 447_down_of_accE5 10 25 - -1.50526 0.00643 0.315 GATCTGGAGGCTTACC Rv1556_pal_1 antisense_Rv3282_217_to_stop 10 25 - -1.50526 0.00643 0.315 GATCTGGAGGCTTACC Rv3246c_nonpal_1 4999_down_of_Rv3180c 4 23 - -0.691358 0.00643 0.327 GTGTACTTTGTGCTTTGACG Rv3246c_nonpal_1 3360_up_of_Rv3179 4 23 - -0.691358 0.00643 0.327 GTGTACTTTGTGCTTTGACG Rv3246c_nonpal_1 13078_down_of_Rv3190c 4 23 - -0.691358 0.00643 0.327 GTGTACTTTGTGCTTTGACG Rv3246c_nonpal_1 8506_up_of_Rv3186 4 23 - -0.691358 0.00643 0.327 GTGTACTTTGTGCTTTGACG Rv3246c_nonpal_1 10041_up_of_Rv3188 4 23 - -0.691358 0.00643 0.327 GTGTACTTTGTGCTTTGACG Rv0880_nonpal_1 43_up_of_Rv3179 3 26 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 9761_down_of_Rv3190c 3 26 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 6724_up_of_Rv3188 3 26 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 5189_up_of_Rv3186 3 26 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 1682_down_of_Rv3180c 3 26 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 9767_down_of_Rv3190c 9 32 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 6730_up_of_Rv3188 9 32 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 5195_up_of_Rv3186 9 32 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 1688_down_of_Rv3180c 9 32 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 49_up_of_Rv3179 9 32 + -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 42_up_of_Rv3179 16 39 - -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 9760_down_of_Rv3190c 16 39 - -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 6723_up_of_Rv3188 16 39 - -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 5188_up_of_Rv3186 16 39 - -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0880_nonpal_1 1681_down_of_Rv3180c 16 39 - -9.94737 0.00643 0.189 CGGTTATAAGTACACCGATCAGTA Rv0158_nonpal_1 antisense_gca_467_from_start 2 26 + -14.0377 0.00644 0.696 GCATGCCGTAAGACTTGTGATATTG Rv0023_pal_2 antisense_PPE24_1570_to_stop 14 29 + 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0023_pal_2 antisense_PPE24_1345_to_stop 14 29 + 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0023_pal_2 antisense_PPE24_1270_to_stop 14 29 + 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0023_pal_2 antisense_aldA_642_from_start 17 32 + 1.96104 0.00644 0.341 CTGGAGGTGACGATGT Rv0023_pal_2 sense_PPE24_1352_to_stop 19 34 + 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 sense_PPE24_1277_to_stop 19 34 + 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 sense_PPE24_1577_to_stop 19 34 + 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 antisense_PPE24_1570_to_stop 14 29 - 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 antisense_PPE24_1345_to_stop 14 29 - 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 antisense_PPE24_1270_to_stop 14 29 - 1.96104 0.00644 0.341 GTATCACAATCGGTGG Rv0023_pal_2 antisense_aldA_642_from_start 17 32 - 1.96104 0.00644 0.341 ACATCGTCACCTCCAG Rv0023_pal_2 sense_PPE24_1577_to_stop 19 34 - 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0023_pal_2 sense_PPE24_1352_to_stop 19 34 - 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0023_pal_2 sense_PPE24_1277_to_stop 19 34 - 1.96104 0.00644 0.341 CCACCGATTGTGATAC Rv0302_nonpal_1 sense_mmpL4_1184_to_stop 19 33 - 2.31884 0.00644 0.421 TTCGAATTGGTCTCC Rv0302_nonpal_1 antisense_mmpL4_1187_to_stop 5 19 + 2.31884 0.00644 0.421 TTCGAATTGGTCTCC Rv1404_pal_1 sense_pks6_424_from_start 11 23 + 3.025 0.00644 0.186 TAACAGCGTATCC Rv1404_pal_1 sense_pks6_423_from_start 11 23 + 3.025 0.00644 0.186 TAACAGCGTATCC Rv1404_pal_1 sense_pks6_424_from_start 11 23 - 3.025 0.00644 0.186 GGATACGCTGTTA Rv1404_pal_1 sense_pks6_423_from_start 11 23 - 3.025 0.00644 0.186 GGATACGCTGTTA Rv1404_pal_1 antisense_pks6_431_from_start 25 37 + 3.025 0.00644 0.186 GGATACGCTGTTA Rv1404_pal_1 antisense_pks6_430_from_start 25 37 + 3.025 0.00644 0.186 GGATACGCTGTTA Rv1404_pal_1 antisense_pks6_431_from_start 25 37 - 3.025 0.00644 0.186 TAACAGCGTATCC Rv1404_pal_1 antisense_pks6_430_from_start 25 37 - 3.025 0.00644 0.186 TAACAGCGTATCC Rv0195_nonpal_1 93_up_of_lpqG 27 40 - -2.89362 0.00645 1 GAATTTCGGGGTAC Rv0158_nonpal_1 antisense_aldA_642_from_start 12 36 + -14.0472 0.00645 0.696 GACTGCTGGAGGTGACGATGTTGAC Rv0576_nonpal_1 antisense_aldA_642_from_start 8 33 - -1.21591 0.00645 0.145 AACATCGTCACCTCCAGCAGTCACGC Rv0324_nonpal_1 antisense_fadE7_121_to_stop 19 26 + -3.25 0.00646 0.42 CAGCGATA Rv0324_nonpal_1 sense_fadE7_118_to_stop 12 19 - -3.25 0.00646 0.42 CAGCGATA Rv1990c_nonpal_1 antisense_pyrC_541_to_stop 7 17 - 3.10769 0.00646 1 CGCCGAGGTCA Rv2034_pal_2 5182_up_of_Rv3186 6 12 + -0.886076 0.00647 0.705 ACGCCGA Rv2034_pal_2 1675_down_of_Rv3180c 6 12 + -0.886076 0.00647 0.705 ACGCCGA Rv2034_pal_2 6717_up_of_Rv3188 6 12 + -0.886076 0.00647 0.705 ACGCCGA Rv2034_pal_2 9754_down_of_Rv3190c 6 12 + -0.886076 0.00647 0.705 ACGCCGA Rv2034_pal_2 36_up_of_Rv3179 6 12 + -0.886076 0.00647 0.705 ACGCCGA Rv2034_pal_2 antisense_Rv1461_559_from_start 9 15 + -0.886076 0.00647 0.705 TCGCCGG Rv2034_pal_2 9754_down_of_Rv3190c 6 12 - -0.886076 0.00647 0.705 TCGGCGT Rv2034_pal_2 36_up_of_Rv3179 6 12 - -0.886076 0.00647 0.705 TCGGCGT Rv2034_pal_2 antisense_pyrC_541_to_stop 12 18 + -0.886076 0.00647 0.705 TCGGCGG Rv2034_pal_2 5182_up_of_Rv3186 6 12 - -0.886076 0.00647 0.705 TCGGCGT Rv2034_pal_2 1675_down_of_Rv3180c 6 12 - -0.886076 0.00647 0.705 TCGGCGT Rv2034_pal_2 6717_up_of_Rv3188 6 12 - -0.886076 0.00647 0.705 TCGGCGT Rv2034_pal_2 antisense_Rv1461_559_from_start 9 15 - -0.886076 0.00647 0.705 CCGGCGA Rv2034_pal_2 antisense_pyrC_541_to_stop 12 18 - -0.886076 0.00647 0.705 CCGCCGA Rv2034_pal_2 sense_pyrC_548_to_stop 30 36 + -0.886076 0.00647 0.705 CCGCCGA Rv2034_pal_2 sense_Rv1461_552_from_start 33 39 + -0.886076 0.00647 0.705 CCGGCGA Rv2034_pal_2 sense_pyrC_548_to_stop 30 36 - -0.886076 0.00647 0.705 TCGGCGG Rv2034_pal_2 sense_Rv1461_552_from_start 33 39 - -0.886076 0.00647 0.705 TCGCCGG Rv1994c_pal_1 sense_pyrC_548_to_stop 17 31 + 2.32432 0.00647 0.155 GGTATTTCGATCACC Rv1994c_pal_1 antisense_pyrC_541_to_stop 17 31 + 2.32432 0.00647 0.155 GGTGATCGAAATACC Rv1994c_pal_1 sense_pyrC_548_to_stop 17 31 - 2.32432 0.00647 0.155 GGTGATCGAAATACC Rv1994c_pal_1 antisense_pyrC_541_to_stop 17 31 - 2.32432 0.00647 0.155 GGTATTTCGATCACC Rv0047c_nonpal_1 sense_Rv0674_10_to_stop 12 26 - 2.23438 0.00647 0.502 GTCACCTCCAGGAGT Rv0135c_nonpal_2 antisense_pks6_430_from_start 5 32 + -26.5106 0.00647 0.464 CATTCGTGAACCCACGATCTGGATACGC Rv0135c_nonpal_2 antisense_pks6_431_from_start 5 32 + -26.5106 0.00647 0.464 CATTCGTGAACCCACGATCTGGATACGC Rv2374c_nonpal_1 sense_mptA_23_from_start 5 32 - -13.2019 0.00647 0.497 CAAATCAACCGCTGGAGCATGGCTCGGA Rv2374c_nonpal_1 37_up_of_Rv2172c 5 32 - -13.2019 0.00647 0.497 CAAATCAACCGCTGGAGCATGGCTCGGA Rv0302_nonpal_1 sense_fadE7_118_to_stop 17 31 - 2.30435 0.00648 0.421 GACCGGGTACTCCAG Rv0302_nonpal_1 antisense_fadE7_121_to_stop 7 21 + 2.30435 0.00648 0.421 GACCGGGTACTCCAG Rv0135c_nonpal_2 sense_pks6_424_from_start 2 29 + -26.5213 0.00648 0.464 AGTGTGCGATAACAGCGTATCCAGATCG Rv0135c_nonpal_2 sense_pks6_423_from_start 2 29 + -26.5213 0.00648 0.464 AGTGTGCGATAACAGCGTATCCAGATCG Rv0967_pal_1 sense_Rv1461_475_from_start 10 16 + -3 0.00649 0.621 GAGGATC Rv0967_pal_1 sense_Rv1461_475_from_start 10 16 - -3 0.00649 0.621 GATCCTC Rv0967_pal_1 antisense_Rv1461_472_from_start 22 28 + -3 0.00649 0.621 GATCCTC Rv0967_pal_1 antisense_Rv1461_472_from_start 22 28 - -3 0.00649 0.621 GAGGATC Rv0302_nonpal_2 antisense_frdA_787_from_start 1 11 - -2.37179 0.00649 1 CGACCTCGGCA Rv0135c_nonpal_1 sense_rocA_797_to_stop 21 31 + -1.67188 0.00649 0.487 CCAATATCGGC Rv0135c_nonpal_1 antisense_rocA_790_to_stop 17 27 - -1.67188 0.00649 0.487 CCAATATCGGC Rv1033c_nonpal_1 10_up_of_Rv1866 18 32 - -4.34177 0.0065 0.66 CATATCGGTGCCTCC Rv2989_nonpal_2 antisense_gca_467_from_start 5 19 - -4.64368 0.0065 1 ACAAGTCTTACGGCA Rv0981_nonpal_1 antisense_Rv1251c_1309_from_start 1 28 - -19.4717 0.0065 0.434 GAAGGCGCTGGAGCCGCTGTACCTCGGG Rv0602c_nonpal_1 antisense_pks6_431_from_start 7 18 + -1.56164 0.00651 0.482 TTCGTGAACCCA Rv0602c_nonpal_1 antisense_pks6_430_from_start 7 18 + -1.56164 0.00651 0.482 TTCGTGAACCCA Rv0047c_nonpal_1 sense_Rv0674_10_to_stop 1 15 + 2.21875 0.00651 0.502 GATGCAACTCAACTC Rv2011c_nonpal_1 sense_bioB_253_to_stop 10 28 + 3.2 0.00651 0.758 GCCGACCTGGAGGTAATGC Rv3488_pal_2 sense_gca_460_from_start 6 13 + -8.17442 0.00651 0.517 CGACATGC Rv3488_pal_2 antisense_Rv2279_293_to_stop 12 19 + -8.17442 0.00651 0.517 CGATGTGT Rv3488_pal_2 sense_gca_460_from_start 6 13 - -8.17442 0.00651 0.517 GCATGTCG Rv3488_pal_2 antisense_Rv2279_293_to_stop 12 19 - -8.17442 0.00651 0.517 ACACATCG Rv3488_pal_2 sense_Rv2279_300_to_stop 29 36 + -8.17442 0.00651 0.517 ACACATCG Rv3488_pal_2 sense_Rv2279_300_to_stop 29 36 - -8.17442 0.00651 0.517 CGATGTGT Rv3736_pal_1 sense_mptA_23_from_start 14 28 + 3.5 0.00651 1 TGCTCCAGCGGTTGA Rv3736_pal_1 37_up_of_Rv2172c 14 28 + 3.5 0.00651 1 TGCTCCAGCGGTTGA Rv3736_pal_1 sense_mptA_23_from_start 14 28 - 3.5 0.00651 1 TCAACCGCTGGAGCA Rv3736_pal_1 37_up_of_Rv2172c 14 28 - 3.5 0.00651 1 TCAACCGCTGGAGCA Rv0023_pal_2 6730_up_of_Rv3188 2 17 + 1.92208 0.00652 0.341 ACAGTGTCGGTTATAA Rv0023_pal_2 1688_down_of_Rv3180c 2 17 + 1.92208 0.00652 0.341 ACAGTGTCGGTTATAA Rv0023_pal_2 5195_up_of_Rv3186 2 17 + 1.92208 0.00652 0.341 ACAGTGTCGGTTATAA Rv0023_pal_2 49_up_of_Rv3179 2 17 + 1.92208 0.00652 0.341 ACAGTGTCGGTTATAA Rv0023_pal_2 9767_down_of_Rv3190c 2 17 + 1.92208 0.00652 0.341 ACAGTGTCGGTTATAA Rv0023_pal_2 5195_up_of_Rv3186 2 17 - 1.92208 0.00652 0.341 TTATAACCGACACTGT Rv0023_pal_2 49_up_of_Rv3179 2 17 - 1.92208 0.00652 0.341 TTATAACCGACACTGT Rv0023_pal_2 9767_down_of_Rv3190c 2 17 - 1.92208 0.00652 0.341 TTATAACCGACACTGT Rv0023_pal_2 1688_down_of_Rv3180c 2 17 - 1.92208 0.00652 0.341 TTATAACCGACACTGT Rv0023_pal_2 6730_up_of_Rv3188 2 17 - 1.92208 0.00652 0.341 TTATAACCGACACTGT Rv1846c_nonpal_1 sense_PPE24_1577_to_stop 2 23 - -16.3298 0.00653 0.39 GATACCCGCGGGTATCGTCAGC Rv1846c_nonpal_1 sense_PPE24_1352_to_stop 2 23 - -16.3298 0.00653 0.39 GATACCCGCGGGTATCGTCAGC Rv1846c_nonpal_1 sense_PPE24_1277_to_stop 2 23 - -16.3298 0.00653 0.39 GATACCCGCGGGTATCGTCAGC Rv0691c_pal_2 sense_pks9_325_to_stop 21 29 + -2.48101 0.00653 0.593 GATGGCTAT Rv0691c_pal_2 sense_pks9_325_to_stop 21 29 - -2.48101 0.00653 0.593 ATAGCCATC Rv2009_nonpal_1 sense_gca_460_from_start 6 26 - -2.32911 0.00654 0.279 TATTGATACGCCAGCATGTCG Rv3681c_pal_1 antisense_Rv2963_530_to_stop 10 23 + 2.45238 0.00655 0.46 CTGCCAGAACGATT Rv3681c_pal_1 antisense_Rv2963_530_to_stop 10 23 - 2.45238 0.00655 0.46 AATCGTTCTGGCAG Rv3681c_pal_1 sense_Rv2963_537_to_stop 25 38 + 2.45238 0.00655 0.46 AATCGTTCTGGCAG Rv3681c_pal_1 sense_Rv2963_537_to_stop 25 38 - 2.45238 0.00655 0.46 CTGCCAGAACGATT Rv3574_pal_1 1662_up_of_Rv2018 21 36 + 1.63768 0.00655 0.289 GTGAAATTGATACAAG Rv3574_pal_1 1662_up_of_Rv2018 21 36 - 1.63768 0.00655 0.289 CTTGTATCAATTTCAC Rv3557c_pal_1 antisense_mmpL4_1187_to_stop 2 15 + -8.77885 0.00655 0.317 AGCTTCGAATTGGT Rv3557c_pal_1 antisense_mmpL4_1187_to_stop 2 15 - -8.77885 0.00655 0.317 ACCAATTCGAAGCT Rv3557c_pal_1 sense_mmpL4_1184_to_stop 23 36 + -8.77885 0.00655 0.317 ACCAATTCGAAGCT Rv3557c_pal_1 sense_mmpL4_1184_to_stop 23 36 - -8.77885 0.00655 0.317 AGCTTCGAATTGGT Rv3124_nonpal_1 sense_Rv2038c_183_from_start 4 30 - -18.4038 0.00655 0.744 CGATCCGGATACGCCCACAGTCCAGCG Rv1816_pal_2 sense_Rv0674_10_to_stop 20 28 + -2.90411 0.00655 0.465 AGGTGACAT Rv1816_pal_2 sense_Rv0674_10_to_stop 20 28 - -2.90411 0.00655 0.465 ATGTCACCT Rv0302_nonpal_1 antisense_PPE24_1570_to_stop 16 30 - 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv0302_nonpal_1 antisense_PPE24_1345_to_stop 16 30 - 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv0302_nonpal_1 antisense_PPE24_1270_to_stop 16 30 - 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv0302_nonpal_1 sense_PPE24_1577_to_stop 18 32 + 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv0302_nonpal_1 sense_PPE24_1352_to_stop 18 32 + 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv0302_nonpal_1 sense_PPE24_1277_to_stop 18 32 + 2.27536 0.00656 0.421 GGTATCACAATCGGT Rv1033c_nonpal_1 8499_up_of_Rv3186 7 21 + -4.37975 0.00656 0.66 CCTACAGTAAACCGA Rv1033c_nonpal_1 10034_up_of_Rv3188 7 21 + -4.37975 0.00656 0.66 CCTACAGTAAACCGA Rv1033c_nonpal_1 3353_up_of_Rv3179 7 21 + -4.37975 0.00656 0.66 CCTACAGTAAACCGA Rv1033c_nonpal_1 4992_down_of_Rv3180c 7 21 + -4.37975 0.00656 0.66 CCTACAGTAAACCGA Rv1033c_nonpal_1 13071_down_of_Rv3190c 7 21 + -4.37975 0.00656 0.66 CCTACAGTAAACCGA Rv2324_nonpal_1 13078_down_of_Rv3190c 17 35 + 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 8506_up_of_Rv3186 17 35 + 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 3360_up_of_Rv3179 17 35 + 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 10041_up_of_Rv3188 17 35 + 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 4999_down_of_Rv3180c 17 35 + 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 10034_up_of_Rv3188 13 31 - 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 3353_up_of_Rv3179 13 31 - 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 8499_up_of_Rv3186 13 31 - 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 13071_down_of_Rv3190c 13 31 - 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv2324_nonpal_1 4992_down_of_Rv3180c 13 31 - 3.2029 0.00657 0.364 AGTACACCAATCGGTTTAC Rv1404_nonpal_1 antisense_aldA_642_from_start 8 33 + -1 0.00657 0.101 GCGTGACTGCTGGAGGTGACGATGTT Rv0691c_nonpal_1 antisense_frdA_787_from_start 4 17 - -1.59375 0.00657 0.486 GGATTACGACCTCG Rv0691c_nonpal_1 sense_PPE34_3066_to_stop 26 39 - -1.59375 0.00657 0.486 ACTCACTGTCACGT Rv0691c_nonpal_1 sense_PPE34_1664_from_start 26 39 - -1.59375 0.00657 0.486 ACTCACTGTCACGT Rv0691c_nonpal_1 sense_PPE34_1439_from_start 26 39 - -1.59375 0.00657 0.486 ACTCACTGTCACGT Rv1556_nonpal_1 antisense_accA1_595_from_start 10 26 + -8.03191 0.00658 0.702 AAACCGCTCCAGGAATA Rv1556_nonpal_1 sense_accA1_598_from_start 12 28 - -8.03191 0.00658 0.702 AAACCGCTCCAGGAATA Rv0981_nonpal_1 sense_accA1_598_from_start 10 37 + -19.5377 0.00658 0.434 GCTATTCCTGGAGCGGTTTGTGTTGCGG Rv0981_nonpal_1 antisense_accA1_595_from_start 1 28 - -19.5377 0.00658 0.434 GCTATTCCTGGAGCGGTTTGTGTTGCGG Rv0324_nonpal_1 antisense_Rv0370c_389_from_start 8 15 - -3.26471 0.00658 0.424 TGCTGCTC Rv0757_nonpal_1 6717_up_of_Rv3188 4 24 - -1.63291 0.00659 0.595 GTATACAAGGAGTCGGCGTGC Rv0757_nonpal_1 5182_up_of_Rv3186 4 24 - -1.63291 0.00659 0.595 GTATACAAGGAGTCGGCGTGC Rv0757_nonpal_1 36_up_of_Rv3179 4 24 - -1.63291 0.00659 0.595 GTATACAAGGAGTCGGCGTGC Rv0757_nonpal_1 9754_down_of_Rv3190c 4 24 - -1.63291 0.00659 0.595 GTATACAAGGAGTCGGCGTGC Rv0757_nonpal_1 1675_down_of_Rv3180c 4 24 - -1.63291 0.00659 0.595 GTATACAAGGAGTCGGCGTGC Rv0602c_pal_1 antisense_gca_467_from_start 15 22 + -2.3038 0.0066 0.166 CTTGTGAT Rv0602c_pal_1 antisense_gca_467_from_start 15 22 - -2.3038 0.0066 0.166 ATCACAAG Rv0602c_pal_1 sense_gca_460_from_start 26 33 + -2.3038 0.0066 0.166 ATCACAAG Rv0602c_pal_1 1662_up_of_Rv2018 27 34 + -2.3038 0.0066 0.166 TTGATACA Rv0602c_pal_1 sense_gca_460_from_start 26 33 - -2.3038 0.0066 0.166 CTTGTGAT Rv0602c_pal_1 1662_up_of_Rv2018 27 34 - -2.3038 0.0066 0.166 TGTATCAA Rv3488_nonpal_1 antisense_Rv1461_416_from_start 27 40 - -5.36765 0.0066 0.395 AGAAGCAGAGATTA Rv0967_pal_2 10_up_of_Rv1866 17 27 + -11.038 0.0066 1 TGGAGGCACCG Rv0967_pal_2 10_up_of_Rv1866 17 27 - -11.038 0.0066 1 CGGTGCCTCCA Rv1674c_nonpal_1 antisense_Rv1461_416_from_start 16 33 + -9.98936 0.0066 0.357 ACTCCAGCTACTAATCTC Rv0273c_pal_1 antisense_pks6_431_from_start 10 25 + -0.15 0.0066 0.442 GTGAACCCACGATCTG Rv0273c_pal_1 antisense_pks6_430_from_start 10 25 + -0.15 0.0066 0.442 GTGAACCCACGATCTG Rv0273c_pal_1 sense_pks6_424_from_start 23 38 + -0.15 0.0066 0.442 CAGATCGTGGGTTCAC Rv0273c_pal_1 sense_pks6_423_from_start 23 38 + -0.15 0.0066 0.442 CAGATCGTGGGTTCAC Rv0273c_pal_1 antisense_pks6_431_from_start 10 25 - -0.15 0.0066 0.442 CAGATCGTGGGTTCAC Rv0273c_pal_1 antisense_pks6_430_from_start 10 25 - -0.15 0.0066 0.442 CAGATCGTGGGTTCAC Rv0273c_pal_1 sense_pks6_423_from_start 23 38 - -0.15 0.0066 0.442 GTGAACCCACGATCTG Rv0273c_pal_1 sense_pks6_424_from_start 23 38 - -0.15 0.0066 0.442 GTGAACCCACGATCTG Rv3676_pal_1 49_up_of_Rv3179 1 16 + -5.28571 0.0066 0.626 TACAGTGTCGGTTATA Rv3676_pal_1 9767_down_of_Rv3190c 1 16 + -5.28571 0.0066 0.626 TACAGTGTCGGTTATA Rv3676_pal_1 5195_up_of_Rv3186 1 16 + -5.28571 0.0066 0.626 TACAGTGTCGGTTATA Rv3676_pal_1 1688_down_of_Rv3180c 1 16 + -5.28571 0.0066 0.626 TACAGTGTCGGTTATA Rv3676_pal_1 6730_up_of_Rv3188 1 16 + -5.28571 0.0066 0.626 TACAGTGTCGGTTATA Rv3676_pal_1 6730_up_of_Rv3188 1 16 - -5.28571 0.0066 0.626 TATAACCGACACTGTA Rv3676_pal_1 9767_down_of_Rv3190c 1 16 - -5.28571 0.0066 0.626 TATAACCGACACTGTA Rv3676_pal_1 1688_down_of_Rv3180c 1 16 - -5.28571 0.0066 0.626 TATAACCGACACTGTA Rv3676_pal_1 5195_up_of_Rv3186 1 16 - -5.28571 0.0066 0.626 TATAACCGACACTGTA Rv3676_pal_1 49_up_of_Rv3179 1 16 - -5.28571 0.0066 0.626 TATAACCGACACTGTA Rv2887_pal_1 antisense_aldA_642_from_start 4 18 + 0.1625 0.00661 0.382 CAAAGCGTGACTGCT Rv2887_pal_1 antisense_aldA_642_from_start 4 18 - 0.1625 0.00661 0.382 AGCAGTCACGCTTTG Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 11 18 + -2.78082 0.00661 0.291 TTGGTCTC Rv1473A_pal_2 antisense_mmpL4_1187_to_stop 11 18 - -2.78082 0.00661 0.291 GAGACCAA Rv1473A_pal_2 sense_mmpL4_1184_to_stop 20 27 + -2.78082 0.00661 0.291 GAGACCAA Rv1473A_pal_2 sense_mmpL4_1184_to_stop 20 27 - -2.78082 0.00661 0.291 TTGGTCTC Rv0022c_nonpal_1 sense_pks6_424_from_start 17 31 + 0.410959 0.00661 0.242 CGTATCCAGATCGTG Rv0022c_nonpal_1 sense_pks6_423_from_start 17 31 + 0.410959 0.00661 0.242 CGTATCCAGATCGTG Rv0022c_nonpal_1 antisense_pks6_431_from_start 17 31 - 0.410959 0.00661 0.242 CGTATCCAGATCGTG Rv0022c_nonpal_1 antisense_pks6_430_from_start 17 31 - 0.410959 0.00661 0.242 CGTATCCAGATCGTG Rv2788_nonpal_2 93_up_of_lpqG 13 40 + -24.9767 0.00661 0.546 GCCCGTCGATGCCAGTACCCCGAAATTC Rv2788_pal_2 antisense_pks6_430_from_start 5 25 + -4.03125 0.00661 0.723 CATTCGTGAACCCACGATCTG Rv2788_pal_2 antisense_pks6_431_from_start 5 25 + -4.03125 0.00661 0.723 CATTCGTGAACCCACGATCTG Rv2788_pal_2 antisense_pks6_431_from_start 5 25 - -4.03125 0.00661 0.723 CAGATCGTGGGTTCACGAATG Rv2788_pal_2 antisense_pks6_430_from_start 5 25 - -4.03125 0.00661 0.723 CAGATCGTGGGTTCACGAATG Rv0465c_pal_1 sense_Rv2038c_183_from_start 7 34 + -5.17045 0.00662 0.299 TGGACTGTGGGCGTATCCGGATCGGCGA Rv0465c_pal_1 sense_Rv2038c_183_from_start 7 34 - -5.17045 0.00662 0.299 TCGCCGATCCGGATACGCCCACAGTCCA Rv1828_pal_1 4999_down_of_Rv3180c 9 37 + -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 13078_down_of_Rv3190c 9 37 + -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 10041_up_of_Rv3188 9 37 + -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 8506_up_of_Rv3186 9 37 + -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 3360_up_of_Rv3179 9 37 + -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 8499_up_of_Rv3186 11 39 + -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 4992_down_of_Rv3180c 11 39 + -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 13071_down_of_Rv3190c 11 39 + -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 3353_up_of_Rv3179 11 39 + -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 10034_up_of_Rv3188 11 39 + -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 4999_down_of_Rv3180c 9 37 - -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 8506_up_of_Rv3186 9 37 - -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 3360_up_of_Rv3179 9 37 - -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 13078_down_of_Rv3190c 9 37 - -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 10041_up_of_Rv3188 9 37 - -5.39362 0.00662 0.21 CAGTAAACCGATTGGTGTACTTTGTGCTT Rv1828_pal_1 4992_down_of_Rv3180c 11 39 - -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 13071_down_of_Rv3190c 11 39 - -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 10034_up_of_Rv3188 11 39 - -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 8499_up_of_Rv3186 11 39 - -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv1828_pal_1 3353_up_of_Rv3179 11 39 - -5.39362 0.00662 0.21 AAGCACAAAGTACACCAATCGGTTTACTG Rv2011c_nonpal_1 antisense_Rv2963_530_to_stop 8 26 + 3.15714 0.00662 0.758 CTCTGCCAGAACGATTCGG Rv2011c_nonpal_1 sense_Rv2963_537_to_stop 22 40 - 3.15714 0.00662 0.758 CTCTGCCAGAACGATTCGG Rv1719_nonpal_1 sense_accA1_598_from_start 24 40 - 1.32895 0.00662 1 GGGCCGCAACACAAACC Rv0767c_nonpal_1 9761_down_of_Rv3190c 10 24 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 1682_down_of_Rv3180c 10 24 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 6724_up_of_Rv3188 10 24 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 43_up_of_Rv3179 10 24 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 5189_up_of_Rv3186 10 24 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 9767_down_of_Rv3190c 16 30 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 49_up_of_Rv3179 16 30 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 1688_down_of_Rv3180c 16 30 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 6730_up_of_Rv3188 16 30 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 5195_up_of_Rv3186 16 30 + 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 5188_up_of_Rv3186 18 32 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 1681_down_of_Rv3180c 18 32 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 9760_down_of_Rv3190c 18 32 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 6723_up_of_Rv3188 18 32 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 42_up_of_Rv3179 18 32 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 5182_up_of_Rv3186 24 38 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 36_up_of_Rv3179 24 38 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 9754_down_of_Rv3190c 24 38 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 1675_down_of_Rv3180c 24 38 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0767c_nonpal_1 6717_up_of_Rv3188 24 38 - 2.42857 0.00662 0.445 AAGTACACCGATCAG Rv0602c_nonpal_1 antisense_Rv1251c_1309_from_start 26 37 + -1.64384 0.00663 0.483 TTCAAGCTGAAC Rv1423_nonpal_2 sense_PE_PGRS57_112_from_start 5 24 - -24.0638 0.00663 1 CACCTGCGTGGTCGCACTGG Rv1423_nonpal_2 sense_PE_PGRS54_112_from_start 5 24 - -24.0638 0.00663 1 CACCTGCGTGGTCGCACTGG Rv2887_nonpal_1 antisense_Rv1251c_1309_from_start 25 39 - -2.325 0.00664 0.519 TCGTTCAGCTTGAAG Rv1353c_nonpal_1 antisense_Rv1461_416_from_start 9 23 - 3.34848 0.00664 0.293 GCTGGAGTAGCCGCA Rv0691c_pal_2 sense_PPE24_1352_to_stop 18 26 + -2.72152 0.00664 0.593 GGTATCACA Rv0691c_pal_2 sense_PPE24_1277_to_stop 18 26 + -2.72152 0.00664 0.593 GGTATCACA Rv0691c_pal_2 sense_PPE24_1577_to_stop 18 26 + -2.72152 0.00664 0.593 GGTATCACA Rv0691c_pal_2 antisense_PPE24_1345_to_stop 22 30 + -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 antisense_PPE24_1270_to_stop 22 30 + -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 antisense_PPE24_1570_to_stop 22 30 + -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 sense_PPE24_1352_to_stop 18 26 - -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 sense_PPE24_1277_to_stop 18 26 - -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 sense_PPE24_1577_to_stop 18 26 - -2.72152 0.00664 0.593 TGTGATACC Rv0691c_pal_2 antisense_PPE24_1345_to_stop 22 30 - -2.72152 0.00664 0.593 GGTATCACA Rv0691c_pal_2 antisense_PPE24_1270_to_stop 22 30 - -2.72152 0.00664 0.593 GGTATCACA Rv0691c_pal_2 antisense_PPE24_1570_to_stop 22 30 - -2.72152 0.00664 0.593 GGTATCACA Rv2642_nonpal_1 antisense_fadE7_121_to_stop 5 29 + -5.82558 0.00665 0.254 ATGACCGGGTACTCCAGCGATATCC Rv2642_nonpal_1 sense_fadE7_118_to_stop 9 33 - -5.82558 0.00665 0.254 ATGACCGGGTACTCCAGCGATATCC Rv0678_pal_2 sense_accA1_598_from_start 7 22 + 0.36 0.00665 0.31 TACGCTATTCCTGGAG Rv0678_pal_2 antisense_accA1_595_from_start 16 31 + 0.36 0.00665 0.31 CTCCAGGAATAGCGTA Rv0678_pal_2 sense_accA1_598_from_start 7 22 - 0.36 0.00665 0.31 CTCCAGGAATAGCGTA Rv0678_pal_2 antisense_accA1_595_from_start 16 31 - 0.36 0.00665 0.31 TACGCTATTCCTGGAG Rv2788_pal_1 antisense_aldA_642_from_start 8 29 + -4.1 0.00665 0.332 GCGTGACTGCTGGAGGTGACGA Rv2788_pal_1 antisense_aldA_642_from_start 8 29 - -4.1 0.00665 0.332 TCGTCACCTCCAGCAGTCACGC Rv1473A_pal_2 sense_metA_384_from_start 7 14 + -2.79452 0.00665 0.291 AAGATTTC Rv1473A_pal_2 sense_metA_384_from_start 7 14 - -2.79452 0.00665 0.291 GAAATCTT Rv0691c_nonpal_1 antisense_pyrC_541_to_stop 4 17 - -1.65625 0.00665 0.486 CGCCGAGGTCACCC Rv3830c_pal_1 sense_pks9_325_to_stop 3 18 + 0.987013 0.00665 1 ACTACGCAATCGTCTC Rv3830c_pal_1 sense_pks9_325_to_stop 3 18 - 0.987013 0.00665 1 GAGACGATTGCGTAGT Rv3736_nonpal_1 sense_Rv0674_10_to_stop 12 26 + 2.65217 0.00665 0.626 ACTCCTGGAGGTGAC Rv3246c_nonpal_1 sense_bioB_253_to_stop 21 40 + -0.814815 0.00665 0.333 GGTAATGCCGGTCGGTGACG Rv0081_nonpal_1 antisense_Rv1461_559_from_start 8 22 - -2.04 0.00665 0.449 ATCCCTGCCGGCGAT Rv0081_nonpal_1 sense_Rv1461_552_from_start 26 40 + -2.04 0.00665 0.449 ATCCCTGCCGGCGAT Rv0818_nonpal_1 sense_gca_460_from_start 13 33 + -6.87234 0.00665 0.496 CTGGCGTATCAATATCACAAG Rv0818_nonpal_1 antisense_gca_467_from_start 15 35 - -6.87234 0.00665 0.496 CTGGCGTATCAATATCACAAG Rv2359_nonpal_1 antisense_Rv1461_416_from_start 3 30 + -24.4231 0.00666 0.284 GTATTGTGCGGCTACTCCAGCTACTAAT Rv0494_nonpal_2 sense_Rv2038c_183_from_start 23 37 - -9.26316 0.00666 1 CGCTCGCCGATCCGG Rv0302_nonpal_1 antisense_Rv0370c_389_from_start 2 16 - 2.23188 0.00667 0.423 GTGCTGCTCATCGAT Rv0022c_nonpal_1 sense_PPE34_3066_to_stop 8 22 + 0.369863 0.00668 0.242 CCGGATTCCCTCCAG Rv0022c_nonpal_1 sense_PPE34_1439_from_start 8 22 + 0.369863 0.00668 0.242 CCGGATTCCCTCCAG Rv0022c_nonpal_1 sense_PPE34_1664_from_start 8 22 + 0.369863 0.00668 0.242 CCGGATTCCCTCCAG Rv0022c_nonpal_1 antisense_PPE34_1661_from_start 16 30 - 0.369863 0.00668 0.242 CCGGATTCCCTCCAG Rv0818_pal_1 sense_pks9_325_to_stop 14 29 + -0.40625 0.00668 0.19 GTCTCCAGATGGCTAT Rv0818_pal_1 sense_pks9_325_to_stop 14 29 - -0.40625 0.00668 0.19 ATAGCCATCTGGAGAC Rv0678_nonpal_1 4_up_of_Rv1049 11 25 + 3.23438 0.00668 0.302 CGAGTCTGGAGTAAT Rv0678_nonpal_1 7_up_of_Rv1049 13 27 - 3.23438 0.00668 0.302 CGAGTCTGGAGTAAT Rv1990c_nonpal_1 antisense_frdA_787_from_start 1 11 + 3.01538 0.00668 1 TGCCGAGGTCG Rv0653c_nonpal_1 sense_fadE7_118_to_stop 15 33 + -1.88608 0.00668 0.233 CGCTGGAGTACCCGGTCAT Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 5 23 - -1.88608 0.00668 0.233 CGCTGGAGTACCCGGTCAT Rv3488_nonpal_1 antisense_aldA_642_from_start 27 40 + -5.42647 0.00668 0.395 CGATGTTGACAACG Rv2324_pal_1 antisense_Rv2279_293_to_stop 3 17 + 0.649351 0.00668 1 GAACCGGATCGATGT Rv2324_pal_1 antisense_Rv2279_293_to_stop 3 17 - 0.649351 0.00668 1 ACATCGATCCGGTTC Rv0047c_nonpal_2 antisense_Rv2963_530_to_stop 9 36 + -40.8632 0.00669 0.322 TCTGCCAGAACGATTCGGGTACCCATGC Rv0047c_nonpal_2 sense_Rv2963_537_to_stop 12 39 - -40.8632 0.00669 0.322 TCTGCCAGAACGATTCGGGTACCCATGC Rv1994c_pal_1 antisense_Rv1461_416_from_start 25 39 + 2.22973 0.0067 0.159 ACTAATCTCTGCTTC Rv1994c_pal_1 antisense_Rv1461_416_from_start 25 39 - 2.22973 0.0067 0.159 GAAGCAGAGATTAGT Rv3416_nonpal_1 antisense_Rv1251c_1309_from_start 4 28 + -9.21649 0.0067 0.498 GAGGTACAGCGGCTCCAGCGCCTTC Rv3249c_nonpal_2 sense_pyrC_548_to_stop 5 19 + 1.08 0.0067 0.627 GCTAAGGACCAGGGT Rv2011c_nonpal_1 antisense_pyrC_541_to_stop 1 19 - 3.12857 0.0067 0.758 ACCGCCGAGGTCACCCCCC Rv1404_pal_1 10_up_of_Rv1866 26 38 + 2.925 0.0067 0.186 CGATATGGTGACA Rv1404_pal_1 10_up_of_Rv1866 26 38 - 2.925 0.0067 0.186 TGTCACCATATCG Rv1776c_nonpal_1 sense_bioB_253_to_stop 7 12 + 2.94521 0.00671 0.802 TTCGCC Rv1776c_nonpal_1 880_up_of_treZ 33 38 + 2.94521 0.00671 0.802 TTCGCC Rv1776c_nonpal_1 antisense_treZ_470_to_stop 33 38 + 2.94521 0.00671 0.802 TTCGCC Rv1776c_nonpal_1 antisense_treY_785_to_stop 33 38 + 2.94521 0.00671 0.802 TTCGCC Rv1846c_pal_1 sense_bioB_253_to_stop 8 22 + -3.55789 0.00671 0.293 TCGCCGACCTGGAGG Rv1846c_pal_1 sense_bioB_253_to_stop 8 22 - -3.55789 0.00671 0.293 CCTCCAGGTCGGCGA Rv3249c_nonpal_1 antisense_frdA_787_from_start 8 18 - 1.89062 0.00671 0.47 AGGATTACGAC Rv1990c_nonpal_1 sense_PPE24_1577_to_stop 4 14 + 3 0.00672 1 TGACGATACCC Rv1990c_nonpal_1 sense_PPE24_1352_to_stop 4 14 + 3 0.00672 1 TGACGATACCC Rv1990c_nonpal_1 sense_PPE24_1277_to_stop 4 14 + 3 0.00672 1 TGACGATACCC Rv0081_nonpal_1 sense_metA_384_from_start 13 27 + -2.08 0.00672 0.449 TCCGCTGATCTCGAT Rv0081_nonpal_1 antisense_metA_391_from_start 21 35 - -2.08 0.00672 0.449 TCCGCTGATCTCGAT Rv0818_pal_1 antisense_metA_391_from_start 14 29 + -0.427083 0.00672 0.19 GTCACGTATCGAGATC Rv0818_pal_1 sense_metA_384_from_start 19 34 + -0.427083 0.00672 0.19 GATCTCGATACGTGAC Rv0818_pal_1 antisense_metA_391_from_start 14 29 - -0.427083 0.00672 0.19 GATCTCGATACGTGAC Rv0818_pal_1 sense_metA_384_from_start 19 34 - -0.427083 0.00672 0.19 GTCACGTATCGAGATC Rv3249c_pal_1 sense_PPE24_1277_to_stop 2 13 + 3.78462 0.00673 0.329 GCTGACGATACC Rv3249c_pal_1 sense_PPE24_1352_to_stop 2 13 + 3.78462 0.00673 0.329 GCTGACGATACC Rv3249c_pal_1 sense_PPE24_1577_to_stop 2 13 + 3.78462 0.00673 0.329 GCTGACGATACC Rv3249c_pal_1 sense_PPE24_1577_to_stop 2 13 - 3.78462 0.00673 0.329 GGTATCGTCAGC Rv3249c_pal_1 sense_PPE24_1277_to_stop 2 13 - 3.78462 0.00673 0.329 GGTATCGTCAGC Rv3249c_pal_1 sense_PPE24_1352_to_stop 2 13 - 3.78462 0.00673 0.329 GGTATCGTCAGC Rv1353c_pal_1 antisense_Rv2279_293_to_stop 2 12 + 4.42424 0.00673 0.334 TGAACCGGATC Rv1353c_pal_1 antisense_Rv2279_293_to_stop 2 12 - 4.42424 0.00673 0.334 GATCCGGTTCA Rv0022c_pal_1 sense_mmpL4_1184_to_stop 8 29 + 1.05405 0.00673 0.175 TGATGATTTCTGGAGACCAATT Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 9 30 + 1.05405 0.00673 0.175 AATTGGTCTCCAGAAATCATCA Rv0022c_pal_1 sense_mmpL4_1184_to_stop 8 29 - 1.05405 0.00673 0.175 AATTGGTCTCCAGAAATCATCA Rv0022c_pal_1 antisense_mmpL4_1187_to_stop 9 30 - 1.05405 0.00673 0.175 TGATGATTTCTGGAGACCAATT Rv1404_pal_1 antisense_PPE24_1570_to_stop 12 24 + 2.9125 0.00674 0.186 AGCCACCGATTGT Rv1404_pal_1 antisense_PPE24_1345_to_stop 12 24 + 2.9125 0.00674 0.186 AGCCACCGATTGT Rv1404_pal_1 antisense_PPE24_1270_to_stop 12 24 + 2.9125 0.00674 0.186 AGCCACCGATTGT Rv1404_pal_1 sense_PPE24_1277_to_stop 24 36 + 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 sense_PPE24_1577_to_stop 24 36 + 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 sense_PPE24_1352_to_stop 24 36 + 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 antisense_PPE24_1570_to_stop 12 24 - 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 antisense_PPE24_1345_to_stop 12 24 - 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 antisense_PPE24_1270_to_stop 12 24 - 2.9125 0.00674 0.186 ACAATCGGTGGCT Rv1404_pal_1 sense_PPE24_1577_to_stop 24 36 - 2.9125 0.00674 0.186 AGCCACCGATTGT Rv1404_pal_1 sense_PPE24_1352_to_stop 24 36 - 2.9125 0.00674 0.186 AGCCACCGATTGT Rv1404_pal_1 sense_PPE24_1277_to_stop 24 36 - 2.9125 0.00674 0.186 AGCCACCGATTGT Rv3676_pal_1 sense_Rv0674_10_to_stop 3 18 + -5.3619 0.00674 0.626 TGCAACTCAACTCCTG Rv3676_pal_1 sense_Rv0674_10_to_stop 3 18 - -5.3619 0.00674 0.626 CAGGAGTTGAGTTGCA Rv0047c_nonpal_1 sense_Rv0674_10_to_stop 17 31 - 2.10938 0.00675 0.502 CTCATGTCACCTCCA Rv0023_nonpal_2 antisense_pks6_431_from_start 5 32 - -40.6731 0.00675 0.429 GCGTATCCAGATCGTGGGTTCACGAATG Rv0023_nonpal_2 antisense_pks6_430_from_start 5 32 - -40.6731 0.00675 0.429 GCGTATCCAGATCGTGGGTTCACGAATG Rv0135c_pal_1 sense_Rv2038c_183_from_start 16 25 + 1.95312 0.00675 0.278 GGCGTATCCG Rv0135c_pal_1 sense_Rv2038c_183_from_start 16 25 - 1.95312 0.00675 0.278 CGGATACGCC Rv2374c_nonpal_1 sense_Rv1278_1158_to_stop 1 28 + -13.4135 0.00675 0.499 CTGATGCGCTGGCGGCTGGAGAGGTCGC Rv0023_nonpal_1 antisense_aldA_642_from_start 19 39 - 2.5493 0.00675 0.164 GTTGTCAACATCGTCACCTCC Rv2989_nonpal_1 5182_up_of_Rv3186 6 26 - -2.97368 0.00675 0.662 CAGTATACAAGGAGTCGGCGT Rv2989_nonpal_1 1675_down_of_Rv3180c 6 26 - -2.97368 0.00675 0.662 CAGTATACAAGGAGTCGGCGT Rv2989_nonpal_1 9754_down_of_Rv3190c 6 26 - -2.97368 0.00675 0.662 CAGTATACAAGGAGTCGGCGT Rv2989_nonpal_1 6717_up_of_Rv3188 6 26 - -2.97368 0.00675 0.662 CAGTATACAAGGAGTCGGCGT Rv2989_nonpal_1 36_up_of_Rv3179 6 26 - -2.97368 0.00675 0.662 CAGTATACAAGGAGTCGGCGT Rv0602c_pal_1 sense_Rv1278_1158_to_stop 1 8 + -2.32911 0.00676 0.168 CTGATGCG Rv0602c_pal_1 sense_Rv1278_1158_to_stop 1 8 - -2.32911 0.00676 0.168 CGCATCAG Rv0339c_nonpal_1 antisense_mmpL4_1187_to_stop 4 17 + 0.712644 0.00676 1 CTTCGAATTGGTCT Rv0339c_nonpal_1 sense_mmpL4_1184_to_stop 21 34 - 0.712644 0.00676 1 CTTCGAATTGGTCT Rv0081_pal_1 1662_up_of_Rv2018 18 33 + 0.133333 0.00676 0.443 CCAGTGAAATTGATAC Rv0081_pal_1 1662_up_of_Rv2018 18 33 - 0.133333 0.00676 0.443 GTATCAATTTCACTGG Rv0023_pal_2 antisense_cobK_311_from_start 3 18 + 1.80519 0.00676 0.346 ACCGCGATGATGGCGG Rv0023_pal_2 antisense_cobK_311_from_start 3 18 - 1.80519 0.00676 0.346 CCGCCATCATCGCGGT Rv1167c_nonpal_1 antisense_Rv3282_217_to_stop 26 40 - -6.91346 0.00676 0.94 ACACCTTCGGCCTCC Rv1167c_nonpal_1 447_down_of_accE5 26 40 - -6.91346 0.00676 0.94 ACACCTTCGGCCTCC Rv0081_nonpal_1 sense_mmpL4_1184_to_stop 6 20 + -2.10667 0.00676 0.449 TTTGATGATTTCTGG Rv0081_nonpal_1 antisense_mmpL4_1187_to_stop 18 32 - -2.10667 0.00676 0.449 TTTGATGATTTCTGG Rv1353c_nonpal_1 sense_pks6_424_from_start 13 27 + 3.30303 0.00677 0.293 ACAGCGTATCCAGAT Rv1353c_nonpal_1 sense_pks6_423_from_start 13 27 + 3.30303 0.00677 0.293 ACAGCGTATCCAGAT Rv1353c_nonpal_1 antisense_pks6_431_from_start 21 35 - 3.30303 0.00677 0.293 ACAGCGTATCCAGAT Rv1353c_nonpal_1 antisense_pks6_430_from_start 21 35 - 3.30303 0.00677 0.293 ACAGCGTATCCAGAT Rv1353c_nonpal_1 antisense_aldA_642_from_start 25 39 - 3.30303 0.00677 0.293 GTTGTCAACATCGTC Rv0022c_nonpal_1 antisense_aldA_642_from_start 3 17 - 0.315068 0.00677 0.243 GCAGTCACGCTTTGG Rv0653c_nonpal_1 10_up_of_Rv1866 2 20 - -1.93671 0.00677 0.233 TCCAGCAGAACAGCCGTCG Rv0023_pal_1 antisense_aldA_642_from_start 27 34 + -2.81013 0.00678 0.531 CGATGTTG Rv0023_pal_1 antisense_aldA_642_from_start 27 34 - -2.81013 0.00678 0.531 CAACATCG Rv0047c_nonpal_1 sense_PPE24_1577_to_stop 16 30 + 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0047c_nonpal_1 sense_PPE24_1352_to_stop 16 30 + 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0047c_nonpal_1 sense_PPE24_1277_to_stop 16 30 + 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0047c_nonpal_1 antisense_PPE24_1270_to_stop 18 32 - 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0047c_nonpal_1 antisense_PPE24_1570_to_stop 18 32 - 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0047c_nonpal_1 antisense_PPE24_1345_to_stop 18 32 - 2.09375 0.00678 0.502 CGGGTATCACAATCG Rv0818_pal_1 sense_Rv1461_552_from_start 7 22 + -0.458333 0.00679 0.19 GGAATATTTCGGTACA Rv0818_pal_1 sense_Rv1461_552_from_start 7 22 - -0.458333 0.00679 0.19 TGTACCGAAATATTCC Rv1423_nonpal_1 sense_Rv2279_300_to_stop 27 37 + 1.23188 0.00679 1 GTACACATCGA Rv1423_nonpal_1 antisense_Rv2279_293_to_stop 11 21 - 1.23188 0.00679 1 GTACACATCGA Rv2989_nonpal_1 antisense_gca_467_from_start 10 30 + -3 0.00679 0.662 TAAGACTTGTGATATTGATAC Rv2989_nonpal_1 antisense_Rv2279_293_to_stop 3 23 - -3 0.00679 0.662 CAGTACACATCGATCCGGTTC Rv2989_nonpal_1 sense_gca_460_from_start 18 38 - -3 0.00679 0.662 TAAGACTTGTGATATTGATAC Rv0653c_nonpal_1 sense_Rv1278_1158_to_stop 16 34 + -1.94937 0.00679 0.233 CTGGAGAGGTCGCTGACCT Rv0339c_nonpal_1 antisense_aldA_642_from_start 19 32 + 0.689655 0.0068 1 GGAGGTGACGATGT Rv1473A_nonpal_1 sense_mmpL4_1184_to_stop 5 18 + -7.60274 0.0068 0.449 TTTTGATGATTTCT Rv1473A_nonpal_1 antisense_mmpL4_1187_to_stop 20 33 - -7.60274 0.0068 0.449 TTTTGATGATTTCT Rv0981_nonpal_1 sense_PE_PGRS57_112_from_start 13 40 + -19.7264 0.0068 0.434 ACCACGCAGGTGCTGGCTGCGGGCGCCG Rv0981_nonpal_1 sense_PE_PGRS54_112_from_start 13 40 + -19.7264 0.0068 0.434 ACCACGCAGGTGCTGGCTGCGGGCGCCG Rv0691c_pal_2 sense_pks6_424_from_start 4 12 + -2.86076 0.00681 0.593 TGTGCGATA Rv0691c_pal_2 sense_pks6_423_from_start 4 12 + -2.86076 0.00681 0.593 TGTGCGATA Rv0691c_pal_2 sense_pks6_424_from_start 4 12 - -2.86076 0.00681 0.593 TATCGCACA Rv0691c_pal_2 sense_pks6_423_from_start 4 12 - -2.86076 0.00681 0.593 TATCGCACA Rv1353c_nonpal_1 10_up_of_Rv1866 11 25 - 3.28788 0.00681 0.293 GTGCCTCCAGCAGAA Rv3736_nonpal_1 antisense_fadE7_121_to_stop 5 19 - 2.5942 0.00681 0.626 GGAGTACCCGGTCAT Rv3736_nonpal_1 sense_fadE7_118_to_stop 19 33 + 2.5942 0.00681 0.626 GGAGTACCCGGTCAT Rv2788_pal_2 antisense_Rv1461_416_from_start 13 33 + -4.14583 0.00681 0.723 GCTACTCCAGCTACTAATCTC Rv2788_pal_2 antisense_Rv1461_416_from_start 13 33 - -4.14583 0.00681 0.723 GAGATTAGTAGCTGGAGTAGC Rv3488_nonpal_1 antisense_pyrC_541_to_stop 7 20 - -5.51471 0.00681 0.395 CACCGCCGAGGTCA Rv3488_nonpal_1 4_up_of_Rv1049 19 32 - -5.51471 0.00681 0.395 TTTGCCCATTACTC Rv3488_nonpal_1 7_up_of_Rv1049 6 19 + -5.51471 0.00681 0.395 TTTGCCCATTACTC Rv3249c_pal_2 antisense_aldA_642_from_start 22 36 + -1.56757 0.00682 0.309 GGTGACGATGTTGAC Rv3249c_pal_2 antisense_aldA_642_from_start 22 36 - -1.56757 0.00682 0.309 GTCAACATCGTCACC Rv0302_nonpal_2 antisense_Rv0370c_389_from_start 8 18 + -2.5 0.00682 1 GAGCAGCACTG Rv1556_pal_1 antisense_Rv2963_530_to_stop 15 30 + -1.72632 0.00683 0.315 AGAACGATTCGGGTAC Rv1556_pal_1 sense_Rv2963_537_to_stop 18 33 + -1.72632 0.00683 0.315 GTACCCGAATCGTTCT Rv1556_pal_1 antisense_Rv2963_530_to_stop 15 30 - -1.72632 0.00683 0.315 GTACCCGAATCGTTCT Rv1556_pal_1 sense_Rv2963_537_to_stop 18 33 - -1.72632 0.00683 0.315 AGAACGATTCGGGTAC Rv3849_nonpal_1 antisense_Rv2963_530_to_stop 5 16 + -3.24658 0.00684 0.719 AAGCTCTGCCAG Rv3830c_nonpal_2 sense_Rv0674_10_to_stop 14 40 + -25.6635 0.00684 0.541 TCCTGGAGGTGACATGAGTGATCTGGT Rv1674c_nonpal_1 37_up_of_Rv2172c 13 30 - -10.1702 0.00685 0.357 AATCAACCGCTGGAGCAT Rv1674c_nonpal_1 sense_mptA_23_from_start 13 30 - -10.1702 0.00685 0.357 AATCAACCGCTGGAGCAT Rv3574_nonpal_2 sense_bioB_253_to_stop 4 31 + -42.4103 0.00686 0.458 CCGTTCGCCGACCTGGAGGTAATGCCGG Rv2009_pal_1 sense_gca_460_from_start 5 33 + -0.591241 0.00686 0.142 CCGACATGCTGGCGTATCAATATCACAAG Rv2009_pal_1 sense_gca_460_from_start 5 33 - -0.591241 0.00686 0.142 CTTGTGATATTGATACGCCAGCATGTCGG Rv2011c_nonpal_1 10_up_of_Rv1866 15 33 + 3.07143 0.00686 0.758 GCTGGAGGCACCGATATGG Rv1816_nonpal_1 sense_mmpL4_1184_to_stop 19 35 - 2.04615 0.00687 0.313 GCTTCGAATTGGTCTCC Rv1816_nonpal_1 antisense_mmpL4_1187_to_stop 3 19 + 2.04615 0.00687 0.313 GCTTCGAATTGGTCTCC Rv0135c_pal_1 13078_down_of_Rv3190c 15 24 + 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 8506_up_of_Rv3186 15 24 + 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 10041_up_of_Rv3188 15 24 + 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 3360_up_of_Rv3179 15 24 + 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 4999_down_of_Rv3180c 15 24 + 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 8506_up_of_Rv3186 15 24 - 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 4992_down_of_Rv3180c 24 33 + 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 8499_up_of_Rv3186 24 33 + 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 3360_up_of_Rv3179 15 24 - 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 13071_down_of_Rv3190c 24 33 + 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 10034_up_of_Rv3188 24 33 + 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 3353_up_of_Rv3179 24 33 + 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 4999_down_of_Rv3180c 15 24 - 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 10041_up_of_Rv3188 15 24 - 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 13078_down_of_Rv3190c 15 24 - 1.89062 0.00687 0.278 GGTGTACTTT Rv0135c_pal_1 8499_up_of_Rv3186 24 33 - 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 13071_down_of_Rv3190c 24 33 - 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 4992_down_of_Rv3180c 24 33 - 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 3353_up_of_Rv3179 24 33 - 1.89062 0.00687 0.278 AAAGTACACC Rv0135c_pal_1 10034_up_of_Rv3188 24 33 - 1.89062 0.00687 0.278 AAAGTACACC Rv1473A_nonpal_2 sense_PE_PGRS57_112_from_start 11 18 - -3.64384 0.00687 0.391 CGTGGTCG Rv1473A_nonpal_2 sense_PE_PGRS54_112_from_start 11 18 - -3.64384 0.00687 0.391 CGTGGTCG Rv0678_nonpal_1 antisense_gca_467_from_start 19 33 + 3.17188 0.00687 0.304 TGATATTGATACGCC Rv0678_nonpal_1 sense_gca_460_from_start 15 29 - 3.17188 0.00687 0.304 TGATATTGATACGCC Rv1674c_nonpal_1 1662_up_of_Rv2018 20 37 + -10.1809 0.00687 0.357 AGTGAAATTGATACAAGA Rv2506_nonpal_1 sense_Rv2279_300_to_stop 18 36 + -6.04255 0.00687 0.617 GGGATCTCAGTACACATCG Rv2506_nonpal_1 antisense_Rv2279_293_to_stop 12 30 - -6.04255 0.00687 0.617 GGGATCTCAGTACACATCG Rv0880_nonpal_1 antisense_Rv2279_293_to_stop 4 27 + -10.2737 0.00687 0.189 AACCGGATCGATGTGTACTGAGAT Rv3557c_pal_1 1681_down_of_Rv3180c 13 26 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 5188_up_of_Rv3186 13 26 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 9760_down_of_Rv3190c 13 26 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 42_up_of_Rv3179 13 26 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 6723_up_of_Rv3188 13 26 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 5189_up_of_Rv3186 16 29 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 9761_down_of_Rv3190c 16 29 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 43_up_of_Rv3179 16 29 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 6724_up_of_Rv3188 16 29 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 1682_down_of_Rv3180c 16 29 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 36_up_of_Rv3179 19 32 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 5182_up_of_Rv3186 19 32 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 6717_up_of_Rv3188 19 32 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 1675_down_of_Rv3180c 19 32 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 9754_down_of_Rv3190c 19 32 + -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 5195_up_of_Rv3186 22 35 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 9767_down_of_Rv3190c 22 35 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 49_up_of_Rv3179 22 35 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 1688_down_of_Rv3180c 22 35 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 6730_up_of_Rv3188 22 35 + -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 5188_up_of_Rv3186 13 26 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 9760_down_of_Rv3190c 13 26 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 1681_down_of_Rv3180c 13 26 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 42_up_of_Rv3179 13 26 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 6723_up_of_Rv3188 13 26 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 5189_up_of_Rv3186 16 29 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 9761_down_of_Rv3190c 16 29 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 43_up_of_Rv3179 16 29 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 1682_down_of_Rv3180c 16 29 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 6724_up_of_Rv3188 16 29 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 36_up_of_Rv3179 19 32 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 1675_down_of_Rv3180c 19 32 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 5182_up_of_Rv3186 19 32 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 9754_down_of_Rv3190c 19 32 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 6717_up_of_Rv3188 19 32 - -9 0.00688 0.317 ACCGATCAGTATAC Rv3557c_pal_1 5195_up_of_Rv3186 22 35 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 49_up_of_Rv3179 22 35 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 9767_down_of_Rv3190c 22 35 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 1688_down_of_Rv3180c 22 35 - -9 0.00688 0.317 GTATACTGATCGGT Rv3557c_pal_1 6730_up_of_Rv3188 22 35 - -9 0.00688 0.317 GTATACTGATCGGT Rv0602c_nonpal_1 sense_gca_460_from_start 7 18 + -1.80822 0.00688 0.494 GACATGCTGGCG Rv0339c_nonpal_1 antisense_cobK_311_from_start 2 15 + 0.643678 0.00688 1 TACCGCGATGATGG Rv1033c_nonpal_1 antisense_Rv2279_293_to_stop 4 18 - -4.59494 0.00688 0.66 CACATCGATCCGGTT Rv2989_nonpal_2 antisense_cobK_311_from_start 5 19 + -4.90805 0.00688 1 CGCGATGATGGCGGT Rv0022c_nonpal_1 antisense_accA1_595_from_start 1 15 - 0.246575 0.00689 0.243 CGGTTTGTGTTGCGG Rv0022c_nonpal_1 sense_accA1_598_from_start 23 37 + 0.246575 0.00689 0.243 CGGTTTGTGTTGCGG Rv3557c_nonpal_1 10041_up_of_Rv3188 17 36 - -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 13078_down_of_Rv3190c 17 36 - -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 8506_up_of_Rv3186 17 36 - -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 3360_up_of_Rv3179 17 36 - -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 4999_down_of_Rv3180c 17 36 - -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 10034_up_of_Rv3188 12 31 + -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 8499_up_of_Rv3186 12 31 + -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 3353_up_of_Rv3179 12 31 + -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 13071_down_of_Rv3190c 12 31 + -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv3557c_nonpal_1 4992_down_of_Rv3180c 12 31 + -18.125 0.00689 0.341 AGTAAACCGATTGGTGTACT Rv0465c_pal_2 sense_pks6_424_from_start 4 11 + -0.949367 0.00689 0.957 TGTGCGAT Rv0465c_pal_2 sense_pks6_423_from_start 4 11 + -0.949367 0.00689 0.957 TGTGCGAT Rv0465c_pal_2 sense_pks9_325_to_stop 5 12 + -0.949367 0.00689 0.957 TACGCAAT Rv0465c_pal_2 sense_pks6_424_from_start 4 11 - -0.949367 0.00689 0.957 ATCGCACA Rv0465c_pal_2 sense_pks6_423_from_start 4 11 - -0.949367 0.00689 0.957 ATCGCACA Rv0465c_pal_2 sense_pks9_325_to_stop 5 12 - -0.949367 0.00689 0.957 ATTGCGTA Rv1994c_nonpal_1 sense_Rv0674_10_to_stop 25 39 - 2.16438 0.00689 0.258 CCAGATCACTCATGT Rv1353c_pal_1 antisense_aldA_642_from_start 13 23 + 4.37879 0.0069 0.334 ACTGCTGGAGG Rv1353c_pal_1 antisense_aldA_642_from_start 13 23 - 4.37879 0.0069 0.334 CCTCCAGCAGT Rv1675c_nonpal_1 sense_rocA_797_to_stop 6 26 + -14.2115 0.0069 1 GGCAGTGGGTGGGTACCAATA Rv2788_nonpal_2 93_up_of_lpqG 2 29 - -25.2442 0.0069 0.546 TACTGGCATCGACGGGCCCTACAATGCG Rv1404_pal_1 antisense_pks6_431_from_start 3 15 + 2.85 0.00691 0.186 AGCATTCGTGAAC Rv1404_pal_1 antisense_pks6_430_from_start 3 15 + 2.85 0.00691 0.186 AGCATTCGTGAAC Rv1404_pal_1 antisense_pks6_430_from_start 3 15 - 2.85 0.00691 0.186 GTTCACGAATGCT Rv1404_pal_1 antisense_pks6_431_from_start 3 15 - 2.85 0.00691 0.186 GTTCACGAATGCT Rv1219c_nonpal_1 4_up_of_Rv1049 25 39 - -1.37975 0.00691 0.599 CCGCCCCTTTGCCCA Rv3681c_pal_1 sense_mptA_23_from_start 19 32 + 2.29762 0.00691 0.46 CAGCGGTTGATTTG Rv3681c_pal_1 37_up_of_Rv2172c 19 32 + 2.29762 0.00691 0.46 CAGCGGTTGATTTG Rv3681c_pal_1 sense_mptA_23_from_start 19 32 - 2.29762 0.00691 0.46 CAAATCAACCGCTG Rv3681c_pal_1 37_up_of_Rv2172c 19 32 - 2.29762 0.00691 0.46 CAAATCAACCGCTG Rv3066_nonpal_1 4_up_of_Rv1049 14 33 + -1.88506 0.00692 1 GTCTGGAGTAATGGGCAAAG Rv3066_nonpal_1 7_up_of_Rv1049 5 24 - -1.88506 0.00692 1 GTCTGGAGTAATGGGCAAAG Rv2034_nonpal_1 sense_mmpL4_1184_to_stop 17 27 + 3.38235 0.00692 0.359 CTGGAGACCAA Rv2034_nonpal_1 antisense_mmpL4_1187_to_stop 11 21 - 3.38235 0.00692 0.359 CTGGAGACCAA Rv1956_nonpal_1 antisense_Rv1461_559_from_start 18 38 + -2.43023 0.00692 0.3 GGGATTACTGTACCGAAATAT Rv1956_nonpal_1 sense_Rv1461_552_from_start 10 30 - -2.43023 0.00692 0.3 GGGATTACTGTACCGAAATAT Rv0081_pal_1 antisense_PPE24_1570_to_stop 5 20 + 0.0533333 0.00693 0.443 AGACTAAAGCCACCGA Rv0081_pal_1 antisense_PPE24_1345_to_stop 5 20 + 0.0533333 0.00693 0.443 AGACTAAAGCCACCGA Rv0081_pal_1 antisense_PPE24_1270_to_stop 5 20 + 0.0533333 0.00693 0.443 AGACTAAAGCCACCGA Rv0081_pal_1 antisense_PPE24_1570_to_stop 5 20 - 0.0533333 0.00693 0.443 TCGGTGGCTTTAGTCT Rv0081_pal_1 antisense_PPE24_1345_to_stop 5 20 - 0.0533333 0.00693 0.443 TCGGTGGCTTTAGTCT Rv0081_pal_1 antisense_PPE24_1270_to_stop 5 20 - 0.0533333 0.00693 0.443 TCGGTGGCTTTAGTCT Rv3249c_pal_1 sense_Rv1461_552_from_start 11 22 + 3.72308 0.00694 0.329 TATTTCGGTACA Rv3249c_pal_1 sense_Rv1461_552_from_start 11 22 - 3.72308 0.00694 0.329 TGTACCGAAATA Rv3249c_pal_1 antisense_Rv1461_559_from_start 26 37 + 3.72308 0.00694 0.329 TGTACCGAAATA Rv3249c_pal_1 antisense_Rv1461_559_from_start 26 37 - 3.72308 0.00694 0.329 TATTTCGGTACA Rv2324_nonpal_2 sense_gca_460_from_start 18 32 + -1.45783 0.00694 0.639 GTATCAATATCACAA Rv2324_nonpal_2 antisense_gca_467_from_start 16 30 - -1.45783 0.00694 0.639 GTATCAATATCACAA Rv3488_pal_1 sense_mmpL4_1184_to_stop 33 40 + -2.79412 0.00694 0.334 AGCTATTT Rv3488_pal_1 sense_mmpL4_1184_to_stop 33 40 - -2.79412 0.00694 0.334 AAATAGCT Rv0273c_nonpal_1 sense_cobK_304_from_start 16 40 + 0.975 0.00694 0.969 GTGGGATCCCGGTACCGCCATCATC Rv0273c_nonpal_1 antisense_cobK_311_from_start 8 32 - 0.975 0.00694 0.969 GTGGGATCCCGGTACCGCCATCATC Rv3830c_nonpal_2 sense_bioB_253_to_stop 9 35 + -25.75 0.00694 0.541 CGCCGACCTGGAGGTAATGCCGGTCGG Rv1473A_nonpal_2 sense_mmpL4_1184_to_stop 11 18 - -3.9863 0.00694 0.391 AGAAATCA Rv1473A_nonpal_2 antisense_Rv1461_416_from_start 27 34 - -3.9863 0.00694 0.391 AGAGATTA Rv1473A_nonpal_2 antisense_mmpL4_1187_to_stop 20 27 + -3.9863 0.00694 0.391 AGAAATCA Rv2021c_nonpal_1 sense_Rv1278_1158_to_stop 17 37 + -1.31325 0.00694 0.483 TGGAGAGGTCGCTGACCTAGC Rv0767c_nonpal_2 sense_pks6_423_from_start 6 26 + -1.56962 0.00695 0.465 TGCGATAACAGCGTATCCAGA Rv0767c_nonpal_2 sense_pks6_424_from_start 6 26 + -1.56962 0.00695 0.465 TGCGATAACAGCGTATCCAGA Rv0767c_nonpal_2 antisense_Rv1251c_1309_from_start 16 36 + -1.56962 0.00695 0.465 CTCCAGCGCCTTCAAGCTGAA Rv0302_nonpal_1 sense_rocA_797_to_stop 10 24 - 2.13043 0.00695 0.428 TTGGTACCCACCCAC Rv0302_nonpal_1 antisense_rocA_790_to_stop 24 38 + 2.13043 0.00695 0.428 TTGGTACCCACCCAC Rv0135c_pal_1 sense_Rv2279_300_to_stop 5 14 + 1.82812 0.00695 0.278 ACCATACGGA Rv0135c_pal_1 sense_Rv2279_300_to_stop 5 14 - 1.82812 0.00695 0.278 TCCGTATGGT Rv0494_nonpal_1 sense_rocA_797_to_stop 11 30 + -3.93827 0.00695 1 TGGGTGGGTACCAATATCGG Rv0494_nonpal_1 antisense_rocA_790_to_stop 18 37 - -3.93827 0.00695 1 TGGGTGGGTACCAATATCGG Rv1353c_pal_1 sense_Rv1461_552_from_start 12 22 + 4.36364 0.00696 0.334 ATTTCGGTACA Rv1353c_pal_1 sense_Rv1461_552_from_start 12 22 - 4.36364 0.00696 0.334 TGTACCGAAAT Rv1353c_pal_1 antisense_Rv1461_559_from_start 26 36 + 4.36364 0.00696 0.334 TGTACCGAAAT Rv1353c_pal_1 antisense_Rv1461_559_from_start 26 36 - 4.36364 0.00696 0.334 ATTTCGGTACA Rv0494_nonpal_2 antisense_fadE7_121_to_stop 1 15 - -9.49474 0.00696 1 TACCCGGTCATCCGG Rv0494_nonpal_2 sense_fadE7_118_to_stop 23 37 + -9.49474 0.00696 1 TACCCGGTCATCCGG Rv2021c_pal_1 antisense_Rv2963_530_to_stop 8 22 + 3.49425 0.00696 0.845 CTCTGCCAGAACGAT Rv2021c_pal_1 antisense_Rv2963_530_to_stop 8 22 - 3.49425 0.00696 0.845 ATCGTTCTGGCAGAG Rv2021c_pal_1 sense_Rv2963_537_to_stop 26 40 + 3.49425 0.00696 0.845 ATCGTTCTGGCAGAG Rv2021c_pal_1 sense_Rv2963_537_to_stop 26 40 - 3.49425 0.00696 0.845 CTCTGCCAGAACGAT Rv0324_nonpal_1 antisense_cobK_311_from_start 4 11 + -3.39706 0.00697 0.437 CCGCGATG Rv0275c_nonpal_1 sense_gca_460_from_start 2 27 + -15.9038 0.00697 0.241 CCACCGACATGCTGGCGTATCAATAT Rv0117_nonpal_1 antisense_rocA_790_to_stop 2 28 - -18.0865 0.00697 0.476 ACCAATATCGGCCGCTACCATAGCTAT Rv0158_nonpal_1 antisense_Rv1461_559_from_start 1 25 + -14.4528 0.00698 0.725 ACTTATTATCGCCGGCAGGGATTAC Rv0022c_pal_1 sense_Rv1278_1158_to_stop 4 25 + 0.945946 0.00698 0.175 ATGCGCTGGCGGCTGGAGAGGT Rv0022c_pal_1 sense_Rv1278_1158_to_stop 4 25 - 0.945946 0.00698 0.175 ACCTCTCCAGCCGCCAGCGCAT Rv2011c_pal_1 antisense_aldA_642_from_start 21 35 + 3.43056 0.00699 0.806 AGGTGACGATGTTGA Rv2011c_pal_1 antisense_aldA_642_from_start 21 35 - 3.43056 0.00699 0.806 TCAACATCGTCACCT Rv1994c_nonpal_1 3360_up_of_Rv3179 18 32 + 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 13078_down_of_Rv3190c 18 32 + 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 10041_up_of_Rv3188 18 32 + 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 4999_down_of_Rv3180c 18 32 + 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 8506_up_of_Rv3186 18 32 + 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 10034_up_of_Rv3188 16 30 - 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 3353_up_of_Rv3179 16 30 - 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 4992_down_of_Rv3180c 16 30 - 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 13071_down_of_Rv3190c 16 30 - 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1994c_nonpal_1 8499_up_of_Rv3186 16 30 - 2.12329 0.00699 0.258 GTACACCAATCGGTT Rv1473A_pal_2 antisense_PPE34_1661_from_start 11 18 + -2.86301 0.00699 0.291 GTAATCTG Rv1473A_pal_2 antisense_PPE34_1661_from_start 11 18 - -2.86301 0.00699 0.291 CAGATTAC Rv1473A_pal_2 sense_PPE34_3066_to_stop 20 27 + -2.86301 0.00699 0.291 CAGATTAC Rv1473A_pal_2 sense_PPE34_1664_from_start 20 27 + -2.86301 0.00699 0.291 CAGATTAC Rv1473A_pal_2 sense_PPE34_1439_from_start 20 27 + -2.86301 0.00699 0.291 CAGATTAC Rv1473A_pal_2 antisense_Rv1461_416_from_start 26 33 + -2.86301 0.00699 0.291 CTAATCTC Rv1473A_pal_2 sense_PPE34_3066_to_stop 20 27 - -2.86301 0.00699 0.291 GTAATCTG Rv1473A_pal_2 sense_PPE34_1664_from_start 20 27 - -2.86301 0.00699 0.291 GTAATCTG Rv1473A_pal_2 sense_PPE34_1439_from_start 20 27 - -2.86301 0.00699 0.291 GTAATCTG Rv1473A_pal_2 antisense_Rv1461_416_from_start 26 33 - -2.86301 0.00699 0.291 GAGATTAG Rv1473A_nonpal_1 sense_PPE34_3066_to_stop 18 31 + -7.73973 0.00699 0.449 TCCAGATTACGTGA Rv1473A_nonpal_1 sense_PPE34_1664_from_start 18 31 + -7.73973 0.00699 0.449 TCCAGATTACGTGA Rv1473A_nonpal_1 sense_PPE34_1439_from_start 18 31 + -7.73973 0.00699 0.449 TCCAGATTACGTGA Rv1473A_nonpal_1 antisense_PPE34_1661_from_start 7 20 - -7.73973 0.00699 0.449 TCCAGATTACGTGA Rv2359_nonpal_1 sense_pyrC_548_to_stop 1 28 - -24.7115 0.00699 0.291 GATCGAAATACCCTGGTCCTTAGCCCAT Rv1994c_pal_1 sense_Rv1461_552_from_start 17 31 + 2.10811 0.00699 0.162 GGTACAGTAATCCCT Rv1994c_pal_1 antisense_Rv1461_559_from_start 17 31 + 2.10811 0.00699 0.162 AGGGATTACTGTACC Rv1994c_pal_1 sense_Rv1461_552_from_start 17 31 - 2.10811 0.00699 0.162 AGGGATTACTGTACC Rv1994c_pal_1 antisense_Rv1461_559_from_start 17 31 - 2.10811 0.00699 0.162 GGTACAGTAATCCCT Rv0047c_nonpal_1 sense_Rv1461_475_from_start 24 38 - 2 0.007 0.51 AATATGACTCCTTGA Rv0465c_nonpal_2 sense_bioB_253_to_stop 3 30 + -11.3448 0.007 1 CCCGTTCGCCGACCTGGAGGTAATGCCG Rv0324_nonpal_1 sense_Rv1461_552_from_start 21 28 + -3.44118 0.00701 0.437 CAGTAATC Rv0324_nonpal_1 antisense_Rv1461_559_from_start 20 27 - -3.44118 0.00701 0.437 CAGTAATC Rv0767c_nonpal_2 antisense_pyrC_541_to_stop 8 28 + -1.60759 0.00702 0.465 GACCTCGGCGGTGATCGAAAT Rv0767c_nonpal_2 sense_pyrC_548_to_stop 20 40 - -1.60759 0.00702 0.465 GACCTCGGCGGTGATCGAAAT Rv3557c_nonpal_1 sense_pks9_325_to_stop 19 38 + -18.2212 0.00702 0.341 CAGATGGCTATCGGTTTGCC Rv3676_pal_1 sense_Rv0674_10_to_stop 21 36 + -5.52381 0.00702 0.626 GGTGACATGAGTGATC Rv3676_pal_1 sense_Rv0674_10_to_stop 21 36 - -5.52381 0.00702 0.626 GATCACTCATGTCACC Rv2250c_nonpal_1 antisense_pyrC_541_to_stop 5 14 - 1.71014 0.00702 0.482 CGAGGTCACC Rv0273c_pal_1 sense_PPE24_1577_to_stop 3 18 + -0.3875 0.00702 0.442 CTGACGATACCCGCGG Rv0273c_pal_1 sense_PPE24_1352_to_stop 3 18 + -0.3875 0.00702 0.442 CTGACGATACCCGCGG Rv0273c_pal_1 sense_PPE24_1277_to_stop 3 18 + -0.3875 0.00702 0.442 CTGACGATACCCGCGG Rv0273c_pal_1 sense_PPE24_1352_to_stop 3 18 - -0.3875 0.00702 0.442 CCGCGGGTATCGTCAG Rv0273c_pal_1 sense_PPE24_1577_to_stop 3 18 - -0.3875 0.00702 0.442 CCGCGGGTATCGTCAG Rv0273c_pal_1 sense_PPE24_1277_to_stop 3 18 - -0.3875 0.00702 0.442 CCGCGGGTATCGTCAG Rv1990c_nonpal_1 sense_Rv2963_537_to_stop 10 20 + 2.87692 0.00703 1 CGGCATGGGTA Rv1990c_nonpal_1 antisense_Rv2963_530_to_stop 28 38 - 2.87692 0.00703 1 CGGCATGGGTA Rv3488_nonpal_1 1662_up_of_Rv2018 16 29 + -5.66176 0.00703 0.402 CTCCAGTGAAATTG Rv0465c_nonpal_1 antisense_rocA_790_to_stop 6 29 - -19.023 0.00703 0.793 TACCAATATCGGCCGCTACCATAG Rv3849_nonpal_2 antisense_pyrC_541_to_stop 6 33 - -18.0814 0.00703 1 AGGGTATTTCGATCACCGCCGAGGTCAC Rv0339c_nonpal_1 93_up_of_lpqG 24 37 - 0.563218 0.00703 1 TTTCGGGGTACTGG Rv1816_nonpal_2 3360_up_of_Rv3179 5 32 - -45.875 0.00703 0.756 AACCGATTGGTGTACTTTGTGCTTTGAC Rv1816_nonpal_2 8506_up_of_Rv3186 5 32 - -45.875 0.00703 0.756 AACCGATTGGTGTACTTTGTGCTTTGAC Rv1816_nonpal_2 13078_down_of_Rv3190c 5 32 - -45.875 0.00703 0.756 AACCGATTGGTGTACTTTGTGCTTTGAC Rv1816_nonpal_2 10041_up_of_Rv3188 5 32 - -45.875 0.00703 0.756 AACCGATTGGTGTACTTTGTGCTTTGAC Rv1816_nonpal_2 4999_down_of_Rv3180c 5 32 - -45.875 0.00703 0.756 AACCGATTGGTGTACTTTGTGCTTTGAC Rv2989_nonpal_1 antisense_pks6_431_from_start 2 22 + -3.15789 0.00703 0.662 CAGCATTCGTGAACCCACGAT Rv2989_nonpal_1 antisense_pks6_430_from_start 2 22 + -3.15789 0.00703 0.662 CAGCATTCGTGAACCCACGAT Rv2011c_pal_1 antisense_fadE7_121_to_stop 6 20 + 3.41667 0.00703 0.806 TGACCGGGTACTCCA Rv2011c_pal_1 sense_fadE7_118_to_stop 18 32 + 3.41667 0.00703 0.806 TGGAGTACCCGGTCA Rv2011c_pal_1 antisense_fadE7_121_to_stop 6 20 - 3.41667 0.00703 0.806 TGGAGTACCCGGTCA Rv2011c_pal_1 sense_fadE7_118_to_stop 18 32 - 3.41667 0.00703 0.806 TGACCGGGTACTCCA Rv1674c_nonpal_1 13078_down_of_Rv3190c 15 32 - -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 8506_up_of_Rv3186 15 32 - -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 3360_up_of_Rv3179 15 32 - -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 10041_up_of_Rv3188 15 32 - -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 4999_down_of_Rv3180c 15 32 - -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 13071_down_of_Rv3190c 16 33 + -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 8499_up_of_Rv3186 16 33 + -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 3353_up_of_Rv3179 16 33 + -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 10034_up_of_Rv3188 16 33 + -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1674c_nonpal_1 4992_down_of_Rv3180c 16 33 + -10.2979 0.00703 0.357 AACCGATTGGTGTACTTT Rv1473A_nonpal_2 antisense_Rv2279_293_to_stop 12 19 - -4.0411 0.00703 0.391 ACACATCG Rv1473A_nonpal_2 sense_Rv2279_300_to_stop 29 36 + -4.0411 0.00703 0.391 ACACATCG Rv3557c_nonpal_1 37_up_of_Rv2172c 5 24 + -18.2404 0.00704 0.341 TCCGAGCCATGCTCCAGCGG Rv3557c_nonpal_1 sense_mptA_23_from_start 5 24 + -18.2404 0.00704 0.341 TCCGAGCCATGCTCCAGCGG Rv1719_nonpal_1 sense_gca_460_from_start 3 19 + 1.13158 0.00704 1 CACCGACATGCTGGCGT Rv0023_nonpal_1 antisense_PPE24_1570_to_stop 10 30 + 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 13071_down_of_Rv3190c 10 30 + 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 antisense_PPE24_1345_to_stop 10 30 + 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 antisense_PPE24_1270_to_stop 10 30 + 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 3353_up_of_Rv3179 10 30 + 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 10034_up_of_Rv3188 10 30 + 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 4992_down_of_Rv3180c 10 30 + 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 8499_up_of_Rv3186 10 30 + 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 3360_up_of_Rv3179 18 38 - 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 4999_down_of_Rv3180c 18 38 - 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 13078_down_of_Rv3190c 18 38 - 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 8506_up_of_Rv3186 18 38 - 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0023_nonpal_1 sense_PPE24_1577_to_stop 18 38 - 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 sense_PPE24_1352_to_stop 18 38 - 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 sense_PPE24_1277_to_stop 18 38 - 2.4507 0.00704 0.164 AAAGCCACCGATTGTGATACC Rv0023_nonpal_1 10041_up_of_Rv3188 18 38 - 2.4507 0.00704 0.164 ACAGTAAACCGATTGGTGTAC Rv0576_nonpal_1 sense_Rv1461_475_from_start 12 37 + -1.54545 0.00704 0.155 GGATCTGGAGGCTCAAGGAGTCATAT Rv0576_nonpal_1 antisense_Rv1461_472_from_start 1 26 - -1.54545 0.00704 0.155 GGATCTGGAGGCTCAAGGAGTCATAT Rv2250c_nonpal_1 antisense_Rv2279_293_to_stop 4 13 + 1.69565 0.00705 0.482 AACCGGATCG Rv0981_nonpal_2 sense_Rv1461_552_from_start 20 40 + -5.46316 0.00705 0.491 ACAGTAATCCCTGCCGGCGAT Rv0981_nonpal_2 antisense_Rv1461_559_from_start 8 28 - -5.46316 0.00705 0.491 ACAGTAATCCCTGCCGGCGAT Rv0465c_nonpal_1 9767_down_of_Rv3190c 5 28 - -19.046 0.00706 0.793 GATCGGTGTACTTATAACCGACAC Rv0465c_nonpal_1 49_up_of_Rv3179 5 28 - -19.046 0.00706 0.793 GATCGGTGTACTTATAACCGACAC Rv0465c_nonpal_1 1688_down_of_Rv3180c 5 28 - -19.046 0.00706 0.793 GATCGGTGTACTTATAACCGACAC Rv0465c_nonpal_1 6730_up_of_Rv3188 5 28 - -19.046 0.00706 0.793 GATCGGTGTACTTATAACCGACAC Rv0465c_nonpal_1 5195_up_of_Rv3186 5 28 - -19.046 0.00706 0.793 GATCGGTGTACTTATAACCGACAC Rv3736_nonpal_1 6724_up_of_Rv3188 24 38 - 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 5189_up_of_Rv3186 24 38 - 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 1682_down_of_Rv3180c 24 38 - 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 43_up_of_Rv3179 24 38 - 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 9761_down_of_Rv3190c 24 38 - 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 6723_up_of_Rv3188 4 18 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 5188_up_of_Rv3186 4 18 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 1681_down_of_Rv3180c 4 18 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 9760_down_of_Rv3190c 4 18 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 42_up_of_Rv3179 4 18 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 36_up_of_Rv3179 10 24 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 6717_up_of_Rv3188 10 24 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 5182_up_of_Rv3186 10 24 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 1675_down_of_Rv3180c 10 24 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv3736_nonpal_1 9754_down_of_Rv3190c 10 24 + 2.50725 0.00706 0.626 CGACTCCTTGTATAC Rv0678_pal_1 antisense_cobK_311_from_start 6 12 + -3.16176 0.00706 0.533 GCGATGA Rv0678_pal_1 antisense_Rv2279_293_to_stop 11 17 + -3.16176 0.00706 0.533 TCGATGT Rv0678_pal_1 antisense_cobK_311_from_start 6 12 - -3.16176 0.00706 0.533 TCATCGC Rv0678_pal_1 antisense_Rv2279_293_to_stop 11 17 - -3.16176 0.00706 0.533 ACATCGA Rv0678_pal_1 93_up_of_lpqG 18 24 + -3.16176 0.00706 0.533 TCGATGC Rv0678_pal_1 93_up_of_lpqG 18 24 - -3.16176 0.00706 0.533 GCATCGA Rv0678_pal_1 sense_Rv2279_300_to_stop 31 37 + -3.16176 0.00706 0.533 ACATCGA Rv0678_pal_1 sense_Rv2279_300_to_stop 31 37 - -3.16176 0.00706 0.533 TCGATGT Rv2642_nonpal_1 antisense_aldA_642_from_start 12 36 - -6.0814 0.00706 0.254 GTCAACATCGTCACCTCCAGCAGTC Rv1353c_pal_1 antisense_cobK_311_from_start 18 28 + 4.33333 0.00706 0.334 GTACCGGGATC Rv1353c_pal_1 sense_cobK_304_from_start 20 30 + 4.33333 0.00706 0.334 GATCCCGGTAC Rv1353c_pal_1 antisense_cobK_311_from_start 18 28 - 4.33333 0.00706 0.334 GATCCCGGTAC Rv1353c_pal_1 sense_cobK_304_from_start 20 30 - 4.33333 0.00706 0.334 GTACCGGGATC Rv1816_nonpal_1 antisense_mmpL4_1187_to_stop 20 36 - 1.96923 0.00706 0.315 GGATTTTGATGATTTCT Rv1816_nonpal_1 sense_mmpL4_1184_to_stop 2 18 + 1.96923 0.00706 0.315 GGATTTTGATGATTTCT Rv2034_nonpal_1 sense_Rv2279_300_to_stop 4 14 + 3.32353 0.00707 0.359 CACCATACGGA Rv0273c_nonpal_1 1662_up_of_Rv2018 1 25 + 0.925 0.00707 0.969 CTATGAATCGGCCTTCTCCAGTGAA Rv2324_nonpal_2 1662_up_of_Rv2018 19 33 - -1.54217 0.00707 0.639 GTATCAATTTCACTG Rv0691c_pal_2 antisense_fadE7_121_to_stop 31 39 + -2.96203 0.00707 0.596 GTTGCCGCC Rv0691c_pal_2 antisense_fadE7_121_to_stop 31 39 - -2.96203 0.00707 0.596 GGCGGCAAC Rv1353c_nonpal_2 sense_cobK_304_from_start 2 22 - -39.0085 0.00709 0.357 ATCCCACGGCGGGCGAGCCAG Rv1353c_nonpal_2 sense_pyrC_548_to_stop 14 34 - -39.0085 0.00709 0.357 GGCGGTGATCGAAATACCCTG Rv1353c_nonpal_2 antisense_Rv0370c_389_from_start 12 32 + -39.0085 0.00709 0.357 AGCACTGGAGGGGTCGGTCCG Rv1353c_nonpal_2 antisense_pyrC_541_to_stop 14 34 + -39.0085 0.00709 0.357 GGCGGTGATCGAAATACCCTG Rv1956_pal_1 sense_mmpL4_1184_to_stop 33 40 + -1.43023 0.00709 0.234 AGCTATTT Rv1956_pal_1 sense_mmpL4_1184_to_stop 33 40 - -1.43023 0.00709 0.234 AAATAGCT Rv0757_nonpal_1 sense_PPE34_1664_from_start 4 24 + -1.94937 0.00709 0.595 TTCCCCGGATTCCCTCCAGAT Rv0757_nonpal_1 sense_PPE34_3066_to_stop 4 24 + -1.94937 0.00709 0.595 TTCCCCGGATTCCCTCCAGAT Rv0757_nonpal_1 sense_PPE34_1439_from_start 4 24 + -1.94937 0.00709 0.595 TTCCCCGGATTCCCTCCAGAT Rv0757_nonpal_1 447_down_of_accE5 4 24 + -1.94937 0.00709 0.595 TGGCCAGGTAAGCCTCCAGAT Rv0757_nonpal_1 antisense_Rv3282_217_to_stop 4 24 + -1.94937 0.00709 0.595 TGGCCAGGTAAGCCTCCAGAT Rv0757_nonpal_1 antisense_PPE34_1661_from_start 14 34 - -1.94937 0.00709 0.595 TTCCCCGGATTCCCTCCAGAT Rv0494_nonpal_2 447_down_of_accE5 5 19 + -9.58947 0.00709 1 GGCCAGGTAAGCCTC Rv0494_nonpal_2 antisense_Rv3282_217_to_stop 5 19 + -9.58947 0.00709 1 GGCCAGGTAAGCCTC Rv0818_pal_1 sense_Rv0674_10_to_stop 22 37 + -0.604167 0.0071 0.195 GTGACATGAGTGATCT Rv0818_pal_1 sense_Rv0674_10_to_stop 22 37 - -0.604167 0.0071 0.195 AGATCACTCATGTCAC Rv2642_nonpal_1 sense_Rv0674_10_to_stop 10 34 + -6.10465 0.0071 0.254 CAACTCCTGGAGGTGACATGAGTGA Rv1167c_nonpal_1 antisense_frdA_787_from_start 10 24 - -7.13462 0.00711 0.94 ACCTCCAGGATTACG Rv3765c_nonpal_1 antisense_Rv1461_472_from_start 12 31 - -10.8737 0.00711 0.617 AGAGAGGATCTGGAGGCTCA Rv3765c_nonpal_1 sense_Rv1461_475_from_start 7 26 + -10.8737 0.00711 0.617 AGAGAGGATCTGGAGGCTCA Rv1719_nonpal_2 antisense_aldA_642_from_start 20 40 - -4 0.00711 1 CGTTGTCAACATCGTCACCTC Rv0602c_nonpal_1 sense_treZ_467_to_stop 28 39 + -1.94521 0.00711 0.496 TTCAGTTCTTTT Rv0602c_nonpal_1 877_up_of_treZ 28 39 + -1.94521 0.00711 0.496 TTCAGTTCTTTT Rv2011c_nonpal_1 sense_bioB_253_to_stop 11 29 - 2.98571 0.00711 0.764 GGCATTACCTCCAGGTCGG Rv2887_pal_1 sense_Rv1278_1158_to_stop 18 32 + -0.0625 0.00711 0.382 GGAGAGGTCGCTGAC Rv1473A_pal_1 antisense_pyrC_541_to_stop 13 24 + 0.728571 0.00711 0.514 CGGCGGTGATCG Rv1473A_pal_1 antisense_pyrC_541_to_stop 13 24 - 0.728571 0.00711 0.514 CGATCACCGCCG Rv1473A_pal_1 sense_pyrC_548_to_stop 24 35 + 0.728571 0.00711 0.514 CGATCACCGCCG Rv1473A_pal_1 sense_pyrC_548_to_stop 24 35 - 0.728571 0.00711 0.514 CGGCGGTGATCG Rv0339c_nonpal_2 3353_up_of_Rv3179 2 22 + -14.3846 0.00712 0.72 GACCTCCTACAGTAAACCGAT Rv0339c_nonpal_2 8499_up_of_Rv3186 2 22 + -14.3846 0.00712 0.72 GACCTCCTACAGTAAACCGAT Rv0339c_nonpal_2 13071_down_of_Rv3190c 2 22 + -14.3846 0.00712 0.72 GACCTCCTACAGTAAACCGAT Rv0339c_nonpal_2 4992_down_of_Rv3180c 2 22 + -14.3846 0.00712 0.72 GACCTCCTACAGTAAACCGAT Rv0339c_nonpal_2 10034_up_of_Rv3188 2 22 + -14.3846 0.00712 0.72 GACCTCCTACAGTAAACCGAT Rv0047c_pal_1 sense_PPE24_1577_to_stop 16 27 + 3.39394 0.00712 0.364 CGGGTATCACAA Rv0047c_pal_1 sense_PPE24_1352_to_stop 16 27 + 3.39394 0.00712 0.364 CGGGTATCACAA Rv0047c_pal_1 sense_PPE24_1277_to_stop 16 27 + 3.39394 0.00712 0.364 CGGGTATCACAA Rv0047c_pal_1 antisense_PPE24_1570_to_stop 21 32 + 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 antisense_PPE24_1345_to_stop 21 32 + 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 antisense_PPE24_1270_to_stop 21 32 + 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 sense_PPE24_1352_to_stop 16 27 - 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 sense_PPE24_1277_to_stop 16 27 - 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 sense_PPE24_1577_to_stop 16 27 - 3.39394 0.00712 0.364 TTGTGATACCCG Rv0047c_pal_1 antisense_PPE24_1570_to_stop 21 32 - 3.39394 0.00712 0.364 CGGGTATCACAA Rv0047c_pal_1 antisense_PPE24_1345_to_stop 21 32 - 3.39394 0.00712 0.364 CGGGTATCACAA Rv0047c_pal_1 antisense_PPE24_1270_to_stop 21 32 - 3.39394 0.00712 0.364 CGGGTATCACAA Rv1219c_nonpal_2 antisense_Rv1461_559_from_start 11 38 - -45.9231 0.00712 0.557 ATATTTCGGTACAGTAATCCCTGCCGGC Rv1219c_nonpal_2 sense_Rv1461_552_from_start 10 37 + -45.9231 0.00712 0.557 ATATTTCGGTACAGTAATCCCTGCCGGC Rv0691c_nonpal_1 sense_Rv1461_475_from_start 27 40 - -2.01562 0.00712 0.513 AAAATATGACTCCT Rv1994c_nonpal_1 10034_up_of_Rv3188 5 19 + 2.06849 0.00712 0.258 CTCCTACAGTAAACC Rv1994c_nonpal_1 3353_up_of_Rv3179 5 19 + 2.06849 0.00712 0.258 CTCCTACAGTAAACC Rv1994c_nonpal_1 4992_down_of_Rv3180c 5 19 + 2.06849 0.00712 0.258 CTCCTACAGTAAACC Rv1994c_nonpal_1 8499_up_of_Rv3186 5 19 + 2.06849 0.00712 0.258 CTCCTACAGTAAACC Rv1994c_nonpal_1 13071_down_of_Rv3190c 5 19 + 2.06849 0.00712 0.258 CTCCTACAGTAAACC Rv1473A_nonpal_1 antisense_Rv1461_472_from_start 18 31 + -7.83562 0.00713 0.449 TCCAGATCCTCTCT Rv1473A_nonpal_1 sense_Rv1461_475_from_start 7 20 - -7.83562 0.00713 0.449 TCCAGATCCTCTCT Rv2009_pal_1 antisense_PPE34_1661_from_start 10 38 + -0.70073 0.00713 0.142 CGTAATCTGGAGGGAATCCGGGGAAAAAT Rv2009_pal_1 antisense_PPE34_1661_from_start 10 38 - -0.70073 0.00713 0.142 ATTTTTCCCCGGATTCCCTCCAGATTACG Rv2250c_nonpal_2 42_up_of_Rv3179 5 32 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 1681_down_of_Rv3180c 5 32 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 5188_up_of_Rv3186 5 32 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 9760_down_of_Rv3190c 5 32 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 6723_up_of_Rv3188 5 32 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 sense_accA1_598_from_start 6 33 - -58.8803 0.00713 0.526 AACACAAACCGCTCCAGGAATAGCGTAT Rv2250c_nonpal_2 6717_up_of_Rv3188 11 38 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 36_up_of_Rv3179 11 38 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 5182_up_of_Rv3186 11 38 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 9754_down_of_Rv3190c 11 38 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 1675_down_of_Rv3180c 11 38 - -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 antisense_accA1_595_from_start 5 32 + -58.8803 0.00713 0.526 AACACAAACCGCTCCAGGAATAGCGTAT Rv2250c_nonpal_2 antisense_Rv2279_293_to_stop 7 34 + -58.8803 0.00713 0.526 CGGATCGATGTGTACTGAGATCCCCTAT Rv2250c_nonpal_2 antisense_PPE24_1570_to_stop 7 34 + -58.8803 0.00713 0.526 ACTAAAGCCACCGATTGTGATACCCGCG Rv2250c_nonpal_2 antisense_PPE24_1345_to_stop 7 34 + -58.8803 0.00713 0.526 ACTAAAGCCACCGATTGTGATACCCGCG Rv2250c_nonpal_2 antisense_PPE24_1270_to_stop 7 34 + -58.8803 0.00713 0.526 ACTAAAGCCACCGATTGTGATACCCGCG Rv2250c_nonpal_2 sense_metA_384_from_start 7 34 + -58.8803 0.00713 0.526 AAGATTTCCGCTGATCTCGATACGTGAC Rv2250c_nonpal_2 5189_up_of_Rv3186 10 37 + -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 9761_down_of_Rv3190c 10 37 + -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 6724_up_of_Rv3188 10 37 + -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 43_up_of_Rv3179 10 37 + -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv2250c_nonpal_2 1682_down_of_Rv3180c 10 37 + -58.8803 0.00713 0.526 AAGTACACCGATCAGTATACAAGGAGTC Rv3488_nonpal_2 sense_Rv2279_300_to_stop 6 33 + -36.6383 0.00713 0.286 CCATACGGATAGGGGATCTCAGTACACA Rv2034_nonpal_1 10_up_of_Rv1866 30 40 - 3.29412 0.00713 0.359 CGTGTCACCAT Rv0691c_pal_1 sense_pks9_325_to_stop 25 36 + 1.84058 0.00713 0.226 GCTATCGGTTTG Rv0691c_pal_1 sense_pks9_325_to_stop 25 36 - 1.84058 0.00713 0.226 CAAACCGATAGC Rv0135c_nonpal_2 sense_Rv2963_537_to_stop 2 29 + -27.1064 0.00714 0.464 TGCTATCGCGGCATGGGTACCCGAATCG Rv0465c_pal_2 antisense_PPE24_1270_to_stop 20 27 + -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 sense_pyrC_548_to_stop 20 27 + -1.08861 0.00714 0.957 ATTTCGAT Rv0465c_pal_2 antisense_PPE24_1570_to_stop 20 27 + -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 antisense_PPE24_1345_to_stop 20 27 + -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 antisense_pyrC_541_to_stop 21 28 + -1.08861 0.00714 0.957 ATCGAAAT Rv0465c_pal_2 sense_PPE24_1352_to_stop 21 28 + -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 sense_PPE24_1577_to_stop 21 28 + -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 sense_PPE24_1277_to_stop 21 28 + -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 antisense_PPE24_1570_to_stop 20 27 - -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 sense_pyrC_548_to_stop 20 27 - -1.08861 0.00714 0.957 ATCGAAAT Rv0465c_pal_2 antisense_PPE24_1345_to_stop 20 27 - -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 antisense_PPE24_1270_to_stop 20 27 - -1.08861 0.00714 0.957 ATCACAAT Rv0465c_pal_2 sense_PPE24_1577_to_stop 21 28 - -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 sense_PPE24_1352_to_stop 21 28 - -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 sense_PPE24_1277_to_stop 21 28 - -1.08861 0.00714 0.957 ATTGTGAT Rv0465c_pal_2 antisense_pyrC_541_to_stop 21 28 - -1.08861 0.00714 0.957 ATTTCGAT Rv1353c_pal_1 antisense_Rv1461_416_from_start 16 26 + 4.31818 0.00714 0.334 ACTCCAGCTAC Rv1353c_pal_1 antisense_Rv1461_416_from_start 16 26 - 4.31818 0.00714 0.334 GTAGCTGGAGT Rv3249c_nonpal_1 5189_up_of_Rv3186 8 18 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 9761_down_of_Rv3190c 8 18 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 6724_up_of_Rv3188 8 18 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 43_up_of_Rv3179 8 18 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 1682_down_of_Rv3180c 8 18 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 9767_down_of_Rv3190c 14 24 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 49_up_of_Rv3179 14 24 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 6730_up_of_Rv3188 14 24 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 1688_down_of_Rv3180c 14 24 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 5195_up_of_Rv3186 14 24 + 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 5188_up_of_Rv3186 24 34 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 1681_down_of_Rv3180c 24 34 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 9760_down_of_Rv3190c 24 34 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 6723_up_of_Rv3188 24 34 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 42_up_of_Rv3179 24 34 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 5182_up_of_Rv3186 30 40 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 9754_down_of_Rv3190c 30 40 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 1675_down_of_Rv3180c 30 40 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 6717_up_of_Rv3188 30 40 - 1.67188 0.00714 0.47 ATAAGTACACC Rv3249c_nonpal_1 36_up_of_Rv3179 30 40 - 1.67188 0.00714 0.47 ATAAGTACACC Rv2887_pal_1 sense_Rv1278_1158_to_stop 18 32 - -0.075 0.00714 0.382 GTCAGCGACCTCTCC Rv3681c_pal_1 1662_up_of_Rv2018 19 32 + 2.20238 0.00715 0.46 CAGTGAAATTGATA Rv3681c_pal_1 1662_up_of_Rv2018 19 32 - 2.20238 0.00715 0.46 TATCAATTTCACTG Rv2324_nonpal_2 93_up_of_lpqG 15 29 + -1.59036 0.00715 0.639 CCGTCGATGCCAGTA Rv1473A_pal_1 antisense_pks6_431_from_start 5 16 + 0.714286 0.00715 0.514 CATTCGTGAACC Rv1473A_pal_1 antisense_pks6_430_from_start 5 16 + 0.714286 0.00715 0.514 CATTCGTGAACC Rv1473A_pal_1 antisense_pks6_431_from_start 5 16 - 0.714286 0.00715 0.514 GGTTCACGAATG Rv1473A_pal_1 antisense_pks6_430_from_start 5 16 - 0.714286 0.00715 0.514 GGTTCACGAATG Rv3246c_pal_1 antisense_cobK_311_from_start 6 21 + 2.2439 0.00716 0.174 GCGATGATGGCGGTAC Rv3246c_pal_1 antisense_cobK_311_from_start 6 21 - 2.2439 0.00716 0.174 GTACCGCCATCATCGC Rv2250c_nonpal_1 antisense_metA_391_from_start 10 19 + 1.65217 0.00716 0.482 CCTGGTCACG Rv2250c_nonpal_1 sense_metA_384_from_start 29 38 - 1.65217 0.00716 0.482 CCTGGTCACG Rv0273c_nonpal_1 sense_fadE7_118_to_stop 16 40 + 0.8875 0.00716 0.969 GCTGGAGTACCCGGTCATCCGGCAC Rv3488_nonpal_2 antisense_Rv2963_530_to_stop 13 40 + -36.6702 0.00717 0.286 CCAGAACGATTCGGGTACCCATGCCGCG Rv3488_nonpal_2 sense_Rv2963_537_to_stop 8 35 - -36.6702 0.00717 0.286 CCAGAACGATTCGGGTACCCATGCCGCG Rv3574_nonpal_1 1662_up_of_Rv2018 3 17 + -2.45588 0.00717 0.307 ATGAATCGGCCTTCT Rv0047c_pal_1 10_up_of_Rv1866 17 28 + 3.37879 0.00717 0.364 TGGAGGCACCGA Rv0047c_pal_1 10_up_of_Rv1866 17 28 - 3.37879 0.00717 0.364 TCGGTGCCTCCA Rv2324_nonpal_2 sense_cobK_304_from_start 8 22 - -1.60241 0.00717 0.639 ATCCCACGGCGGGCG Rv2324_nonpal_2 antisense_cobK_311_from_start 26 40 + -1.60241 0.00717 0.639 ATCCCACGGCGGGCG Rv1404_nonpal_1 1682_down_of_Rv3180c 2 27 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 9761_down_of_Rv3190c 2 27 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 43_up_of_Rv3179 2 27 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 6724_up_of_Rv3188 2 27 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 5189_up_of_Rv3186 2 27 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 49_up_of_Rv3179 8 33 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 1688_down_of_Rv3180c 8 33 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 9767_down_of_Rv3190c 8 33 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 6730_up_of_Rv3188 8 33 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 5195_up_of_Rv3186 8 33 - -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 1681_down_of_Rv3180c 15 40 + -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 9760_down_of_Rv3190c 15 40 + -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 42_up_of_Rv3179 15 40 + -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 6723_up_of_Rv3188 15 40 + -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv1404_nonpal_1 5188_up_of_Rv3186 15 40 + -1.3 0.00717 0.101 ATACTGATCGGTGTACTTATAACCGA Rv2034_nonpal_1 4999_down_of_Rv3180c 16 26 + 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 10041_up_of_Rv3188 16 26 + 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 8506_up_of_Rv3186 16 26 + 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 13078_down_of_Rv3190c 16 26 + 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 3360_up_of_Rv3179 16 26 + 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 13071_down_of_Rv3190c 22 32 - 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 4992_down_of_Rv3180c 22 32 - 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 8499_up_of_Rv3186 22 32 - 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 10034_up_of_Rv3188 22 32 - 3.27941 0.00717 0.359 AAGTACACCAA Rv2034_nonpal_1 3353_up_of_Rv3179 22 32 - 3.27941 0.00717 0.359 AAGTACACCAA Rv2359_pal_1 4999_down_of_Rv3180c 8 28 + -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 13078_down_of_Rv3190c 8 28 + -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 10041_up_of_Rv3188 8 28 + -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 8506_up_of_Rv3186 8 28 + -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 3360_up_of_Rv3179 8 28 + -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 4992_down_of_Rv3180c 20 40 + -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 8499_up_of_Rv3186 20 40 + -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 13071_down_of_Rv3190c 20 40 + -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 3353_up_of_Rv3179 20 40 + -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 10034_up_of_Rv3188 20 40 + -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 4999_down_of_Rv3180c 8 28 - -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 8506_up_of_Rv3186 8 28 - -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 10041_up_of_Rv3188 8 28 - -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 3360_up_of_Rv3179 8 28 - -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 13078_down_of_Rv3190c 8 28 - -16.5524 0.00717 0.143 GATTGGTGTACTTTGTGCTTT Rv2359_pal_1 13071_down_of_Rv3190c 20 40 - -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 10034_up_of_Rv3188 20 40 - -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 4992_down_of_Rv3180c 20 40 - -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 8499_up_of_Rv3186 20 40 - -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv2359_pal_1 3353_up_of_Rv3179 20 40 - -16.5524 0.00717 0.143 AAAGCACAAAGTACACCAATC Rv1816_pal_2 sense_PPE24_1277_to_stop 1 9 + -2.94521 0.00717 0.475 AGCTGACGA Rv1816_pal_2 sense_PPE24_1577_to_stop 1 9 + -2.94521 0.00717 0.475 AGCTGACGA Rv1816_pal_2 sense_PPE24_1352_to_stop 1 9 + -2.94521 0.00717 0.475 AGCTGACGA Rv1816_pal_2 sense_PPE24_1277_to_stop 1 9 - -2.94521 0.00717 0.475 TCGTCAGCT Rv1816_pal_2 sense_PPE24_1577_to_stop 1 9 - -2.94521 0.00717 0.475 TCGTCAGCT Rv1816_pal_2 sense_PPE24_1352_to_stop 1 9 - -2.94521 0.00717 0.475 TCGTCAGCT Rv2009_nonpal_1 sense_Rv2038c_183_from_start 9 29 + -2.68354 0.00717 0.279 GACTGTGGGCGTATCCGGATC Rv2009_nonpal_1 sense_mptA_23_from_start 12 32 + -2.68354 0.00717 0.279 CATGCTCCAGCGGTTGATTTG Rv2009_nonpal_1 37_up_of_Rv2172c 12 32 + -2.68354 0.00717 0.279 CATGCTCCAGCGGTTGATTTG Rv3830c_pal_1 sense_cobK_304_from_start 2 17 + 0.727273 0.00718 1 CTGGCTCGCCCGCCGT Rv3830c_pal_1 sense_cobK_304_from_start 2 17 - 0.727273 0.00718 1 ACGGCGGGCGAGCCAG Rv3557c_nonpal_1 8506_up_of_Rv3186 1 20 + -18.3462 0.00718 0.341 TACCGTCAAAGCACAAAGTA Rv3557c_nonpal_1 3360_up_of_Rv3179 1 20 + -18.3462 0.00718 0.341 TACCGTCAAAGCACAAAGTA Rv3557c_nonpal_1 10041_up_of_Rv3188 1 20 + -18.3462 0.00718 0.341 TACCGTCAAAGCACAAAGTA Rv3557c_nonpal_1 13078_down_of_Rv3190c 1 20 + -18.3462 0.00718 0.341 TACCGTCAAAGCACAAAGTA Rv3557c_nonpal_1 4999_down_of_Rv3180c 1 20 + -18.3462 0.00718 0.341 TACCGTCAAAGCACAAAGTA Rv3488_nonpal_1 sense_Rv1278_1158_to_stop 20 33 - -5.76471 0.00718 0.405 GGTCAGCGACCTCT Rv2250c_pal_1 4999_down_of_Rv3180c 4 10 + -3.52941 0.00718 0.52 CGTCAAA Rv2250c_pal_1 13078_down_of_Rv3190c 4 10 + -3.52941 0.00718 0.52 CGTCAAA Rv2250c_pal_1 10041_up_of_Rv3188 4 10 + -3.52941 0.00718 0.52 CGTCAAA Rv2250c_pal_1 3360_up_of_Rv3179 4 10 + -3.52941 0.00718 0.52 CGTCAAA Rv2250c_pal_1 8506_up_of_Rv3186 4 10 + -3.52941 0.00718 0.52 CGTCAAA Rv2250c_pal_1 10041_up_of_Rv3188 4 10 - -3.52941 0.00718 0.52 TTTGACG Rv2250c_pal_1 4999_down_of_Rv3180c 4 10 - -3.52941 0.00718 0.52 TTTGACG Rv2250c_pal_1 13078_down_of_Rv3190c 4 10 - -3.52941 0.00718 0.52 TTTGACG Rv2250c_pal_1 8506_up_of_Rv3186 4 10 - -3.52941 0.00718 0.52 TTTGACG Rv2250c_pal_1 3360_up_of_Rv3179 4 10 - -3.52941 0.00718 0.52 TTTGACG Rv1473A_nonpal_1 antisense_PPE34_1661_from_start 1 14 + -7.87671 0.00719 0.449 TCACTGTCACGTAA Rv1473A_nonpal_1 sense_PPE34_3066_to_stop 24 37 - -7.87671 0.00719 0.449 TCACTGTCACGTAA Rv1473A_nonpal_1 sense_PPE34_1664_from_start 24 37 - -7.87671 0.00719 0.449 TCACTGTCACGTAA Rv1473A_nonpal_1 sense_PPE34_1439_from_start 24 37 - -7.87671 0.00719 0.449 TCACTGTCACGTAA Rv0653c_nonpal_1 447_down_of_accE5 15 33 + -2.16456 0.00719 0.242 GCCTCCAGATCGGAGGCCG Rv0653c_nonpal_1 antisense_Rv3282_217_to_stop 15 33 + -2.16456 0.00719 0.242 GCCTCCAGATCGGAGGCCG Rv0081_nonpal_1 9754_down_of_Rv3190c 5 19 - -2.36 0.00719 0.449 CAAGGAGTCGGCGTG Rv0081_nonpal_1 36_up_of_Rv3179 5 19 - -2.36 0.00719 0.449 CAAGGAGTCGGCGTG Rv0081_nonpal_1 6717_up_of_Rv3188 5 19 - -2.36 0.00719 0.449 CAAGGAGTCGGCGTG Rv0081_nonpal_1 5182_up_of_Rv3186 5 19 - -2.36 0.00719 0.449 CAAGGAGTCGGCGTG Rv0081_nonpal_1 1675_down_of_Rv3180c 5 19 - -2.36 0.00719 0.449 CAAGGAGTCGGCGTG Rv0023_nonpal_2 sense_mmpL4_1184_to_stop 13 40 - -41.1058 0.00719 0.442 AAATAGCTTCGAATTGGTCTCCAGAAAT Rv2250c_nonpal_1 sense_Rv2038c_183_from_start 21 30 + 1.63768 0.00719 0.482 ATCCGGATCG Rv1828_pal_1 antisense_aldA_642_from_start 8 36 + -5.71277 0.0072 0.221 GCGTGACTGCTGGAGGTGACGATGTTGAC Rv1828_pal_1 antisense_aldA_642_from_start 8 36 - -5.71277 0.0072 0.221 GTCAACATCGTCACCTCCAGCAGTCACGC Rv1846c_nonpal_1 sense_cobK_304_from_start 2 23 - -16.8511 0.0072 0.407 GATCCCACGGCGGGCGAGCCAG Rv3681c_nonpal_1 antisense_PPE34_1661_from_start 16 35 + -2.55696 0.0072 0.456 CTGGAGGGAATCCGGGGAAA Rv3681c_nonpal_1 sense_PPE34_1439_from_start 3 22 - -2.55696 0.0072 0.456 CTGGAGGGAATCCGGGGAAA Rv3681c_nonpal_1 sense_PPE34_1664_from_start 3 22 - -2.55696 0.0072 0.456 CTGGAGGGAATCCGGGGAAA Rv3681c_nonpal_1 sense_PPE34_3066_to_stop 3 22 - -2.55696 0.0072 0.456 CTGGAGGGAATCCGGGGAAA Rv3574_pal_1 sense_pyrC_548_to_stop 8 23 + 1.36232 0.00721 0.289 AAGGACCAGGGTATTT Rv3574_pal_1 sense_pyrC_548_to_stop 8 23 - 1.36232 0.00721 0.289 AAATACCCTGGTCCTT Rv3574_pal_1 antisense_pyrC_541_to_stop 25 40 + 1.36232 0.00721 0.289 AAATACCCTGGTCCTT Rv3574_pal_1 antisense_pyrC_541_to_stop 25 40 - 1.36232 0.00721 0.289 AAGGACCAGGGTATTT Rv1219c_nonpal_1 antisense_Rv2963_530_to_stop 6 20 + -1.5443 0.00722 0.599 AGCTCTGCCAGAACG Rv0880_nonpal_1 sense_bioB_253_to_stop 1 24 + -10.5158 0.00722 0.189 ACCCCGTTCGCCGACCTGGAGGTA Rv0472c_nonpal_1 antisense_Rv2963_530_to_stop 5 15 + -5.45192 0.00723 0.266 AAGCTCTGCCA Rv1255c_nonpal_1 antisense_pks6_431_from_start 17 36 + -5.2069 0.00723 0.465 CACGATCTGGATACGCTGTT Rv1255c_nonpal_1 antisense_pks6_430_from_start 17 36 + -5.2069 0.00723 0.465 CACGATCTGGATACGCTGTT Rv1255c_nonpal_1 sense_pks6_424_from_start 12 31 - -5.2069 0.00723 0.465 CACGATCTGGATACGCTGTT Rv1255c_nonpal_1 sense_pks6_423_from_start 12 31 - -5.2069 0.00723 0.465 CACGATCTGGATACGCTGTT Rv2642_nonpal_1 antisense_pks6_431_from_start 13 37 + -6.18605 0.00724 0.254 AACCCACGATCTGGATACGCTGTTA Rv2642_nonpal_1 antisense_pks6_430_from_start 13 37 + -6.18605 0.00724 0.254 AACCCACGATCTGGATACGCTGTTA Rv2642_nonpal_1 sense_pks6_424_from_start 11 35 - -6.18605 0.00724 0.254 AACCCACGATCTGGATACGCTGTTA Rv2642_nonpal_1 sense_pks6_423_from_start 11 35 - -6.18605 0.00724 0.254 AACCCACGATCTGGATACGCTGTTA Rv3133c_pal_1 1662_up_of_Rv2018 7 22 + 2.08219 0.00724 1 ATCGGCCTTCTCCAGT Rv3133c_pal_1 1662_up_of_Rv2018 7 22 - 2.08219 0.00724 1 ACTGGAGAAGGCCGAT Rv0081_nonpal_1 antisense_mmpL4_1187_to_stop 24 38 + -2.38667 0.00724 0.449 ATCATCAAAATCCGC Rv2009_nonpal_1 4999_down_of_Rv3180c 14 34 + -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 10041_up_of_Rv3188 14 34 + -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 8506_up_of_Rv3186 14 34 + -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 3360_up_of_Rv3179 14 34 + -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 13078_down_of_Rv3190c 14 34 + -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 3353_up_of_Rv3179 14 34 - -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 4992_down_of_Rv3180c 14 34 - -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 13071_down_of_Rv3190c 14 34 - -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 10034_up_of_Rv3188 14 34 - -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2009_nonpal_1 8499_up_of_Rv3186 14 34 - -2.72152 0.00724 0.279 CAAAGTACACCAATCGGTTTA Rv2034_nonpal_1 antisense_frdA_787_from_start 8 18 - 3.25 0.00725 0.359 AGGATTACGAC Rv0757_pal_1 sense_Rv0674_10_to_stop 2 15 + 2.60759 0.00725 0.719 ATGCAACTCAACTC Rv0757_pal_1 sense_Rv0674_10_to_stop 2 15 - 2.60759 0.00725 0.719 GAGTTGAGTTGCAT Rv3488_nonpal_2 sense_Rv2963_537_to_stop 4 31 + -36.7553 0.00726 0.286 CTATCGCGGCATGGGTACCCGAATCGTT Rv3830c_nonpal_2 sense_fadE7_118_to_stop 9 35 + -26.0192 0.00726 0.541 GGATATCGCTGGAGTACCCGGTCATCC Rv3830c_nonpal_2 antisense_fadE7_121_to_stop 3 29 - -26.0192 0.00726 0.541 GGATATCGCTGGAGTACCCGGTCATCC Rv1423_nonpal_1 sense_Rv2279_300_to_stop 4 14 + 1.02899 0.00726 1 CACCATACGGA Rv1956_nonpal_1 antisense_pks6_431_from_start 10 30 + -2.61628 0.00726 0.3 GTGAACCCACGATCTGGATAC Rv1956_nonpal_1 antisense_pks6_430_from_start 10 30 + -2.61628 0.00726 0.3 GTGAACCCACGATCTGGATAC Rv1956_nonpal_1 sense_pks6_423_from_start 18 38 - -2.61628 0.00726 0.3 GTGAACCCACGATCTGGATAC Rv1956_nonpal_1 sense_pks6_424_from_start 18 38 - -2.61628 0.00726 0.3 GTGAACCCACGATCTGGATAC Rv1404_nonpal_1 antisense_Rv2279_293_to_stop 2 27 + -1.35 0.00727 0.101 TGAACCGGATCGATGTGTACTGAGAT Rv0022c_pal_1 sense_Rv0674_10_to_stop 2 23 + 0.824324 0.00727 0.175 ATGCAACTCAACTCCTGGAGGT Rv0022c_pal_1 sense_Rv0674_10_to_stop 2 23 - 0.824324 0.00727 0.175 ACCTCCAGGAGTTGAGTTGCAT Rv1776c_nonpal_1 antisense_accA1_595_from_start 2 7 - 2.24658 0.00727 0.802 GTTGCG Rv1776c_nonpal_1 sense_accA1_598_from_start 31 36 + 2.24658 0.00727 0.802 GTTGCG Rv2021c_nonpal_1 antisense_metA_391_from_start 7 27 + -1.49398 0.00728 0.496 GCACCTGGTCACGTATCGAGA Rv0302_nonpal_1 antisense_fadE7_121_to_stop 16 30 - 2.01449 0.00728 0.43 GGGATATCGCTGGAG Rv0302_nonpal_1 sense_fadE7_118_to_stop 8 22 + 2.01449 0.00728 0.43 GGGATATCGCTGGAG Rv2506_pal_1 sense_PPE34_1664_from_start 1 16 + -2.52632 0.00728 0.374 TTTTTCCCCGGATTCC Rv2506_pal_1 sense_PPE34_1439_from_start 1 16 + -2.52632 0.00728 0.374 TTTTTCCCCGGATTCC Rv2506_pal_1 sense_PPE34_3066_to_stop 1 16 + -2.52632 0.00728 0.374 TTTTTCCCCGGATTCC Rv2506_pal_1 antisense_PPE34_1661_from_start 22 37 + -2.52632 0.00728 0.374 GGAATCCGGGGAAAAA Rv2506_pal_1 sense_PPE34_3066_to_stop 1 16 - -2.52632 0.00728 0.374 GGAATCCGGGGAAAAA Rv2506_pal_1 sense_PPE34_1664_from_start 1 16 - -2.52632 0.00728 0.374 GGAATCCGGGGAAAAA Rv2506_pal_1 sense_PPE34_1439_from_start 1 16 - -2.52632 0.00728 0.374 GGAATCCGGGGAAAAA Rv2506_pal_1 antisense_PPE34_1661_from_start 22 37 - -2.52632 0.00728 0.374 TTTTTCCCCGGATTCC Rv0767c_pal_1 antisense_metA_391_from_start 13 24 + 3.62376 0.00729 0.989 GGTCACGTATCG Rv0767c_pal_1 sense_metA_384_from_start 24 35 + 3.62376 0.00729 0.989 CGATACGTGACC Rv0767c_pal_1 antisense_metA_391_from_start 13 24 - 3.62376 0.00729 0.989 CGATACGTGACC Rv0767c_pal_1 sense_metA_384_from_start 24 35 - 3.62376 0.00729 0.989 GGTCACGTATCG Rv1033c_nonpal_1 37_up_of_Rv2172c 18 32 - -4.8481 0.00729 0.66 CAAATCAACCGCTGG Rv1033c_nonpal_1 sense_mptA_23_from_start 18 32 - -4.8481 0.00729 0.66 CAAATCAACCGCTGG Rv1353c_nonpal_1 antisense_frdA_787_from_start 7 21 + 3.12121 0.00729 0.311 GGTCGTAATCCTGGA Rv0339c_nonpal_2 antisense_Rv2963_530_to_stop 14 34 + -14.5096 0.00729 0.72 CAGAACGATTCGGGTACCCAT Rv0339c_nonpal_2 sense_Rv2963_537_to_stop 14 34 - -14.5096 0.00729 0.72 CAGAACGATTCGGGTACCCAT Rv3557c_nonpal_1 antisense_frdA_787_from_start 16 35 + -18.4231 0.00729 0.341 CCTGGAGGTAGCGGTAGCCG Rv3849_nonpal_1 antisense_accA1_595_from_start 18 29 - -3.53425 0.00729 0.735 CGCTATTCCTGG Rv3849_nonpal_1 sense_accA1_598_from_start 9 20 + -3.53425 0.00729 0.735 CGCTATTCCTGG Rv0135c_nonpal_1 43_up_of_Rv3179 1 11 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 6724_up_of_Rv3188 1 11 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 5189_up_of_Rv3186 1 11 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 9761_down_of_Rv3190c 1 11 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 1682_down_of_Rv3180c 1 11 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 1688_down_of_Rv3180c 7 17 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 6730_up_of_Rv3188 7 17 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 5195_up_of_Rv3186 7 17 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 9767_down_of_Rv3190c 7 17 - -2.09375 0.0073 0.487 TTATAACCGAC Rv0135c_nonpal_1 49_up_of_Rv3179 7 17 - -2.09375 0.0073 0.487 TTATAACCGAC Rv1556_nonpal_1 antisense_Rv3282_217_to_stop 9 25 - -8.53191 0.0073 0.717 GATCTGGAGGCTTACCT Rv1556_nonpal_1 447_down_of_accE5 9 25 - -8.53191 0.0073 0.717 GATCTGGAGGCTTACCT Rv0691c_nonpal_2 antisense_fadE7_121_to_stop 5 28 + -43.1923 0.0073 0.63 ATGACCGGGTACTCCAGCGATATC Rv0691c_nonpal_2 sense_fadE7_118_to_stop 10 33 - -43.1923 0.0073 0.63 ATGACCGGGTACTCCAGCGATATC Rv2506_nonpal_1 antisense_pks6_431_from_start 1 19 - -6.30851 0.0073 0.621 GTGGGTTCACGAATGCTGG Rv2506_nonpal_1 antisense_pks6_430_from_start 1 19 - -6.30851 0.0073 0.621 GTGGGTTCACGAATGCTGG Rv0678_nonpal_1 sense_Rv1461_475_from_start 2 16 - 3.03125 0.00731 0.317 GATCCTCTCTGATCT Rv0678_nonpal_1 antisense_Rv1461_472_from_start 22 36 + 3.03125 0.00731 0.317 GATCCTCTCTGATCT Rv0691c_pal_1 sense_pks9_325_to_stop 8 19 + 1.73913 0.00731 0.228 GCAATCGTCTCC Rv0691c_pal_1 sense_pks9_325_to_stop 8 19 - 1.73913 0.00731 0.228 GGAGACGATTGC Rv3488_nonpal_1 sense_pks9_325_to_stop 18 31 + -5.85294 0.00731 0.405 CCAGATGGCTATCG Rv0022c_nonpal_1 sense_Rv2279_300_to_stop 18 32 + 0 0.00732 0.254 GGGATCTCAGTACAC Rv0022c_nonpal_1 antisense_Rv2279_293_to_stop 16 30 - 0 0.00732 0.254 GGGATCTCAGTACAC Rv1719_nonpal_1 antisense_Rv0370c_389_from_start 22 38 + 1 0.00733 1 GGGTCGGTCCGCGGTGC Rv3681c_pal_1 antisense_Rv1461_472_from_start 9 22 + 2.13095 0.00733 0.46 CCTTGAGCCTCCAG Rv3681c_pal_1 sense_Rv1461_475_from_start 16 29 + 2.13095 0.00733 0.46 CTGGAGGCTCAAGG Rv3681c_pal_1 antisense_Rv1461_472_from_start 9 22 - 2.13095 0.00733 0.46 CTGGAGGCTCAAGG Rv3681c_pal_1 sense_Rv1461_475_from_start 16 29 - 2.13095 0.00733 0.46 CCTTGAGCCTCCAG Rv1956_nonpal_1 sense_metA_384_from_start 3 23 + -2.65116 0.00733 0.3 GCTCAAGATTTCCGCTGATCT Rv3249c_nonpal_1 9761_down_of_Rv3190c 22 32 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 43_up_of_Rv3179 22 32 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 6724_up_of_Rv3188 22 32 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 1682_down_of_Rv3180c 22 32 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 5189_up_of_Rv3186 22 32 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 9767_down_of_Rv3190c 28 38 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 1688_down_of_Rv3180c 28 38 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 49_up_of_Rv3179 28 38 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 6730_up_of_Rv3188 28 38 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 5195_up_of_Rv3186 28 38 + 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 1681_down_of_Rv3180c 10 20 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 5188_up_of_Rv3186 10 20 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 9760_down_of_Rv3190c 10 20 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 6723_up_of_Rv3188 10 20 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 42_up_of_Rv3179 10 20 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 36_up_of_Rv3179 16 26 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 5182_up_of_Rv3186 16 26 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 9754_down_of_Rv3190c 16 26 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 6717_up_of_Rv3188 16 26 - 1.57812 0.00733 0.47 CAGTATACAAG Rv3249c_nonpal_1 1675_down_of_Rv3180c 16 26 - 1.57812 0.00733 0.47 CAGTATACAAG Rv2011c_pal_1 antisense_cobK_311_from_start 1 15 + 3.31944 0.00733 0.806 ATACCGCGATGATGG Rv2011c_pal_1 antisense_cobK_311_from_start 1 15 - 3.31944 0.00733 0.806 CCATCATCGCGGTAT Rv3066_nonpal_1 antisense_metA_391_from_start 19 38 + -2.10345 0.00734 1 GTATCGAGATCAGCGGAAAT Rv3066_nonpal_1 sense_metA_384_from_start 10 29 - -2.10345 0.00734 1 GTATCGAGATCAGCGGAAAT Rv1719_nonpal_2 sense_PE_PGRS57_112_from_start 9 29 + -4.15294 0.00734 1 TGCGACCACGCAGGTGCTGGC Rv1719_nonpal_2 sense_PE_PGRS54_112_from_start 9 29 + -4.15294 0.00734 1 TGCGACCACGCAGGTGCTGGC Rv2324_nonpal_2 antisense_frdA_787_from_start 1 15 - -1.71084 0.00734 0.643 ATTACGACCTCGGCA Rv1556_pal_1 sense_Rv2038c_183_from_start 8 23 + -1.98947 0.00734 0.315 GGACTGTGGGCGTATC Rv1556_pal_1 sense_Rv2038c_183_from_start 8 23 - -1.98947 0.00734 0.315 GATACGCCCACAGTCC Rv1674c_nonpal_1 4_up_of_Rv1049 20 37 - -10.5106 0.00734 0.362 GCCCCTTTGCCCATTACT Rv1674c_nonpal_1 7_up_of_Rv1049 1 18 + -10.5106 0.00734 0.362 GCCCCTTTGCCCATTACT Rv0967_pal_2 antisense_pyrC_541_to_stop 4 14 + -11.2278 0.00735 1 GGGTGACCTCG Rv0967_pal_2 antisense_pyrC_541_to_stop 4 14 - -11.2278 0.00735 1 CGAGGTCACCC Rv1828_nonpal_1 antisense_pyrC_541_to_stop 1 24 + -11.6277 0.00735 0.485 GGGGGGTGACCTCGGCGGTGATCG Rv1404_pal_1 antisense_rocA_790_to_stop 4 16 + 2.6875 0.00735 0.194 AGCTATGGTAGCG Rv1404_pal_1 antisense_rocA_790_to_stop 4 16 - 2.6875 0.00735 0.194 CGCTACCATAGCT Rv3249c_pal_1 1662_up_of_Rv2018 23 34 + 3.6 0.00735 0.329 GAAATTGATACA Rv3249c_pal_1 antisense_aldA_642_from_start 25 36 + 3.6 0.00735 0.329 GACGATGTTGAC Rv3249c_pal_1 1662_up_of_Rv2018 23 34 - 3.6 0.00735 0.329 TGTATCAATTTC Rv3249c_pal_1 antisense_aldA_642_from_start 25 36 - 3.6 0.00735 0.329 GTCAACATCGTC Rv0324_nonpal_1 sense_Rv1278_1158_to_stop 26 33 + -3.54412 0.00736 0.448 CGCTGACC Rv0767c_pal_1 sense_pks9_325_to_stop 20 31 + 3.60396 0.00736 0.989 AGATGGCTATCG Rv0767c_pal_1 sense_pks9_325_to_stop 20 31 - 3.60396 0.00736 0.989 CGATAGCCATCT Rv0757_nonpal_1 sense_pks6_423_from_start 1 21 - -2.11392 0.00736 0.595 ATACGCTGTTATCGCACACTT Rv0757_nonpal_1 sense_pks6_424_from_start 1 21 - -2.11392 0.00736 0.595 ATACGCTGTTATCGCACACTT Rv0302_nonpal_2 antisense_fadE7_121_to_stop 30 40 - -2.71795 0.00737 1 GGGCGGCAACG Rv0472c_nonpal_1 sense_PPE34_3066_to_stop 27 37 - -5.52885 0.00737 0.266 TCACTGTCACG Rv0472c_nonpal_1 sense_PPE34_1664_from_start 27 37 - -5.52885 0.00737 0.266 TCACTGTCACG Rv0472c_nonpal_1 sense_PPE34_1439_from_start 27 37 - -5.52885 0.00737 0.266 TCACTGTCACG Rv0472c_nonpal_1 antisense_PPE34_1661_from_start 1 11 + -5.52885 0.00737 0.266 TCACTGTCACG Rv1033c_nonpal_1 sense_mmpL4_1184_to_stop 17 31 - -4.89873 0.00737 0.66 CGAATTGGTCTCCAG Rv1033c_nonpal_1 antisense_mmpL4_1187_to_stop 7 21 + -4.89873 0.00737 0.66 CGAATTGGTCTCCAG Rv1423_nonpal_2 antisense_rocA_790_to_stop 7 26 + -24.7128 0.00737 1 TATGGTAGCGGCCGATATTG Rv0981_nonpal_2 sense_pks9_325_to_stop 5 25 - -5.65263 0.00737 0.491 CCATCTGGAGACGATTGCGTA Rv0767c_nonpal_1 sense_Rv2038c_183_from_start 6 20 + 2.14286 0.00738 0.445 CTGGACTGTGGGCGT Rv2989_nonpal_1 sense_Rv0674_10_to_stop 19 39 - -3.38158 0.00738 0.662 CCAGATCACTCATGTCACCTC Rv3681c_nonpal_1 antisense_Rv1461_416_from_start 20 39 + -2.65823 0.00739 0.456 CAGCTACTAATCTCTGCTTC Rv3066_pal_1 antisense_metA_391_from_start 12 25 + 0.511364 0.00739 1 TGGTCACGTATCGA Rv3066_pal_1 sense_metA_384_from_start 23 36 + 0.511364 0.00739 1 TCGATACGTGACCA Rv3066_pal_1 antisense_metA_391_from_start 12 25 - 0.511364 0.00739 1 TCGATACGTGACCA Rv3066_pal_1 sense_metA_384_from_start 23 36 - 0.511364 0.00739 1 TGGTCACGTATCGA Rv0273c_nonpal_1 antisense_fadE7_121_to_stop 3 27 + 0.8 0.0074 0.969 GGATGACCGGGTACTCCAGCGATAT Rv0273c_nonpal_1 sense_fadE7_118_to_stop 11 35 - 0.8 0.0074 0.969 GGATGACCGGGTACTCCAGCGATAT Rv1956_nonpal_1 antisense_rocA_790_to_stop 5 25 + -2.68605 0.0074 0.3 GCTATGGTAGCGGCCGATATT Rv0472c_nonpal_1 sense_Rv1278_1158_to_stop 23 33 - -5.55769 0.0074 0.266 GGTCAGCGACC Rv3249c_nonpal_1 sense_Rv2038c_183_from_start 11 21 + 1.54688 0.0074 0.47 CTGTGGGCGTA Rv0465c_pal_1 antisense_PPE24_1570_to_stop 5 32 + -5.60227 0.0074 0.299 AGACTAAAGCCACCGATTGTGATACCCG Rv0465c_pal_1 antisense_PPE24_1270_to_stop 5 32 + -5.60227 0.0074 0.299 AGACTAAAGCCACCGATTGTGATACCCG Rv0465c_pal_1 antisense_PPE24_1345_to_stop 5 32 + -5.60227 0.0074 0.299 AGACTAAAGCCACCGATTGTGATACCCG Rv0465c_pal_1 antisense_PPE24_1270_to_stop 5 32 - -5.60227 0.0074 0.299 CGGGTATCACAATCGGTGGCTTTAGTCT Rv0465c_pal_1 antisense_PPE24_1570_to_stop 5 32 - -5.60227 0.0074 0.299 CGGGTATCACAATCGGTGGCTTTAGTCT Rv0465c_pal_1 antisense_PPE24_1345_to_stop 5 32 - -5.60227 0.0074 0.299 CGGGTATCACAATCGGTGGCTTTAGTCT Rv2034_nonpal_1 sense_Rv2038c_183_from_start 28 38 - 3.19118 0.0074 0.359 GCGCTCGCCGA Rv0757_nonpal_1 1662_up_of_Rv2018 17 37 - -2.13924 0.00741 0.595 TCTTGTATCAATTTCACTGGA Rv2250c_nonpal_1 antisense_frdA_787_from_start 31 40 + 1.53623 0.00741 0.482 AGCCGTCTTT Rv2887_nonpal_1 sense_mptA_23_from_start 21 35 + -2.7375 0.00741 0.519 GCGGTTGATTTGGCT Rv2887_nonpal_1 37_up_of_Rv2172c 21 35 + -2.7375 0.00741 0.519 GCGGTTGATTTGGCT Rv3246c_nonpal_1 93_up_of_lpqG 6 25 + -1.20988 0.00741 0.355 TTGTAGGGCCCGTCGATGCC Rv0117_nonpal_1 7_up_of_Rv1049 13 39 + -18.4135 0.00741 0.491 ATTACTCCAGACTCGTGTAGCTACACG Rv1816_pal_1 sense_metA_384_from_start 8 20 + 3.45517 0.00743 0.268 AGATTTCCGCTGA Rv1816_pal_1 sense_metA_384_from_start 8 20 - 3.45517 0.00743 0.268 TCAGCGGAAATCT Rv1816_pal_1 antisense_metA_391_from_start 28 40 + 3.45517 0.00743 0.268 TCAGCGGAAATCT Rv1816_pal_1 antisense_metA_391_from_start 28 40 - 3.45517 0.00743 0.268 AGATTTCCGCTGA Rv3849_nonpal_2 sense_bioB_253_to_stop 8 35 - -18.407 0.00744 1 CCGACCGGCATTACCTCCAGGTCGGCGA Rv0691c_nonpal_2 5189_up_of_Rv3186 8 31 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 9761_down_of_Rv3190c 8 31 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 1682_down_of_Rv3180c 8 31 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 6724_up_of_Rv3188 8 31 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 43_up_of_Rv3179 8 31 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 1688_down_of_Rv3180c 14 37 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 9767_down_of_Rv3190c 14 37 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 49_up_of_Rv3179 14 37 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 6730_up_of_Rv3188 14 37 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 5195_up_of_Rv3186 14 37 + -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 5188_up_of_Rv3186 11 34 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 9760_down_of_Rv3190c 11 34 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 6723_up_of_Rv3188 11 34 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 42_up_of_Rv3179 11 34 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 1681_down_of_Rv3180c 11 34 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 1675_down_of_Rv3180c 17 40 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 9754_down_of_Rv3190c 17 40 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 5182_up_of_Rv3186 17 40 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 36_up_of_Rv3179 17 40 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0691c_nonpal_2 6717_up_of_Rv3188 17 40 - -43.3462 0.00744 0.63 ATAAGTACACCGATCAGTATACAA Rv0494_nonpal_2 sense_PE_PGRS57_112_from_start 19 33 - -9.84211 0.00745 1 CGCAGCCAGCACCTG Rv0494_nonpal_2 sense_PE_PGRS54_112_from_start 19 33 - -9.84211 0.00745 1 CGCAGCCAGCACCTG Rv2359_pal_1 antisense_Rv1461_472_from_start 9 29 + -16.7429 0.00745 0.144 CCTTGAGCCTCCAGATCCTCT Rv2359_pal_1 sense_Rv1461_475_from_start 9 29 + -16.7429 0.00745 0.144 AGAGGATCTGGAGGCTCAAGG Rv2359_pal_1 antisense_Rv1461_472_from_start 9 29 - -16.7429 0.00745 0.144 AGAGGATCTGGAGGCTCAAGG Rv2359_pal_1 sense_Rv1461_475_from_start 9 29 - -16.7429 0.00745 0.144 CCTTGAGCCTCCAGATCCTCT Rv3488_nonpal_1 sense_mmpL4_1184_to_stop 11 24 - -5.94118 0.00745 0.405 GTCTCCAGAAATCA Rv3488_nonpal_1 antisense_mmpL4_1187_to_stop 14 27 + -5.94118 0.00745 0.405 GTCTCCAGAAATCA Rv3133c_nonpal_1 8506_up_of_Rv3186 9 23 + 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 4999_down_of_Rv3180c 9 23 + 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 13078_down_of_Rv3190c 9 23 + 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 3360_up_of_Rv3179 9 23 + 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 10041_up_of_Rv3188 9 23 + 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 8499_up_of_Rv3186 25 39 - 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 4992_down_of_Rv3180c 25 39 - 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 3353_up_of_Rv3179 25 39 - 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 13071_down_of_Rv3190c 25 39 - 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv3133c_nonpal_1 10034_up_of_Rv3188 25 39 - 2.65217 0.00745 0.531 AAGCACAAAGTACAC Rv0967_nonpal_2 7_up_of_Rv1049 2 22 + -19.6915 0.00746 1 CCCCTTTGCCCATTACTCCAG Rv0967_nonpal_2 4_up_of_Rv1049 16 36 - -19.6915 0.00746 1 CCCCTTTGCCCATTACTCCAG Rv3246c_pal_1 antisense_frdA_787_from_start 12 27 + 2.12195 0.00746 0.178 TAATCCTGGAGGTAGC Rv3246c_pal_1 antisense_frdA_787_from_start 12 27 - 2.12195 0.00746 0.178 GCTACCTCCAGGATTA Rv1956_nonpal_1 antisense_gca_467_from_start 1 21 + -2.72093 0.00746 0.3 TGCATGCCGTAAGACTTGTGA Rv0273c_nonpal_1 sense_Rv0674_10_to_stop 14 38 + 0.775 0.00746 0.969 TCCTGGAGGTGACATGAGTGATCTG Rv0981_nonpal_2 sense_Rv1461_475_from_start 12 32 + -5.70526 0.00746 0.491 GGATCTGGAGGCTCAAGGAGT Rv0981_nonpal_2 antisense_Rv1461_472_from_start 6 26 - -5.70526 0.00746 0.491 GGATCTGGAGGCTCAAGGAGT Rv3249c_nonpal_1 sense_pks6_424_from_start 1 11 + 1.51562 0.00746 0.47 AAGTGTGCGAT Rv3249c_nonpal_1 sense_pks6_423_from_start 1 11 + 1.51562 0.00746 0.47 AAGTGTGCGAT Rv1353c_pal_2 antisense_pyrC_541_to_stop 7 33 + -41.1453 0.00747 0.385 TGACCTCGGCGGTGATCGAAATACCCT Rv1353c_pal_2 antisense_pyrC_541_to_stop 7 33 - -41.1453 0.00747 0.385 AGGGTATTTCGATCACCGCCGAGGTCA Rv1473A_nonpal_1 sense_fadE7_118_to_stop 6 19 - -8.06849 0.00747 0.449 CAGCGATATCCCGT Rv1473A_nonpal_1 antisense_fadE7_121_to_stop 19 32 + -8.06849 0.00747 0.449 CAGCGATATCCCGT Rv1719_nonpal_1 antisense_Rv1461_559_from_start 6 22 - 0.934211 0.00747 1 ATCCCTGCCGGCGATAA Rv2642_nonpal_1 antisense_Rv2279_293_to_stop 3 27 - -6.32558 0.00748 0.254 ATCTCAGTACACATCGATCCGGTTC Rv0023_nonpal_1 sense_rocA_797_to_stop 14 34 + 2.30986 0.00748 0.167 GTGGGTACCAATATCGGCCGC Rv0023_nonpal_1 antisense_rocA_790_to_stop 14 34 - 2.30986 0.00748 0.167 GTGGGTACCAATATCGGCCGC Rv0023_nonpal_1 1662_up_of_Rv2018 14 34 - 2.30986 0.00748 0.167 TGTATCAATTTCACTGGAGAA Rv2989_nonpal_2 sense_bioB_253_to_stop 18 32 + -5.29885 0.00748 1 GGAGGTAATGCCGGT Rv2506_nonpal_1 antisense_PPE34_1661_from_start 21 39 + -6.41489 0.00748 0.621 GGGAATCCGGGGAAAAATG Rv0967_nonpal_2 antisense_Rv1461_559_from_start 10 30 + -19.7128 0.00748 1 CGCCGGCAGGGATTACTGTAC Rv0967_nonpal_2 sense_Rv1461_552_from_start 18 38 - -19.7128 0.00748 1 CGCCGGCAGGGATTACTGTAC Rv0465c_pal_1 antisense_Rv1461_559_from_start 7 34 + -5.64773 0.00749 0.299 TATCGCCGGCAGGGATTACTGTACCGAA Rv0465c_pal_1 antisense_Rv1461_559_from_start 7 34 - -5.64773 0.00749 0.299 TTCGGTACAGTAATCCCTGCCGGCGATA Rv0981_nonpal_1 sense_gca_460_from_start 9 36 + -20.2736 0.00749 0.454 CATGCTGGCGTATCAATATCACAAGTCT Rv0981_nonpal_1 antisense_gca_467_from_start 12 39 - -20.2736 0.00749 0.454 CATGCTGGCGTATCAATATCACAAGTCT Rv0339c_nonpal_1 sense_Rv2038c_183_from_start 4 17 + 0.321839 0.00749 1 CGCTGGACTGTGGG Rv1473A_pal_2 antisense_fadE7_121_to_stop 5 12 + -2.93151 0.0075 0.303 ATGACCGG Rv1473A_pal_2 antisense_fadE7_121_to_stop 5 12 - -2.93151 0.0075 0.303 CCGGTCAT Rv1473A_pal_2 sense_fadE7_118_to_stop 26 33 + -2.93151 0.0075 0.303 CCGGTCAT Rv1473A_pal_2 sense_fadE7_118_to_stop 26 33 - -2.93151 0.0075 0.303 ATGACCGG Rv0302_nonpal_2 antisense_cobK_311_from_start 10 20 - -2.79487 0.0075 1 TACCGCCATCA Rv0302_nonpal_2 sense_cobK_304_from_start 28 38 + -2.79487 0.0075 1 TACCGCCATCA Rv1719_nonpal_2 antisense_pyrC_541_to_stop 2 22 + -4.25882 0.0075 1 GGGGGTGACCTCGGCGGTGAT Rv1359_nonpal_1 sense_metA_384_from_start 3 30 - -15.9038 0.00751 0.364 CGTATCGAGATCAGCGGAAATCTTGAGC Rv0653c_nonpal_1 antisense_Rv1461_559_from_start 15 33 + -2.32911 0.00751 0.242 GCAGGGATTACTGTACCGA Rv0653c_nonpal_1 sense_Rv1461_552_from_start 15 33 - -2.32911 0.00751 0.242 GCAGGGATTACTGTACCGA Rv0678_nonpal_1 antisense_Rv2963_530_to_stop 6 20 - 2.96875 0.00751 0.321 CGTTCTGGCAGAGCT Rv1353c_pal_1 sense_Rv0674_10_to_stop 12 22 + 4.21212 0.00751 0.334 ACTCCTGGAGG Rv1353c_pal_1 sense_Rv0674_10_to_stop 12 22 - 4.21212 0.00751 0.334 CCTCCAGGAGT Rv3488_pal_1 antisense_cobK_311_from_start 10 17 + -3.22059 0.00752 0.334 TGATGGCG Rv3488_pal_1 antisense_cobK_311_from_start 10 17 - -3.22059 0.00752 0.334 CGCCATCA Rv3488_pal_1 sense_cobK_304_from_start 31 38 + -3.22059 0.00752 0.334 CGCCATCA Rv3488_pal_1 sense_cobK_304_from_start 31 38 - -3.22059 0.00752 0.334 TGATGGCG Rv3249c_pal_1 sense_mmpL4_1184_to_stop 6 17 + 3.55385 0.00752 0.329 TTTGATGATTTC Rv3249c_pal_1 sense_mmpL4_1184_to_stop 6 17 - 3.55385 0.00752 0.329 GAAATCATCAAA Rv3249c_pal_1 antisense_mmpL4_1187_to_stop 21 32 + 3.55385 0.00752 0.329 GAAATCATCAAA Rv3249c_pal_1 antisense_mmpL4_1187_to_stop 21 32 - 3.55385 0.00752 0.329 TTTGATGATTTC Rv3249c_nonpal_1 sense_PE_PGRS57_112_from_start 9 19 - 1.48438 0.00752 0.47 GCGTGGTCGCA Rv3249c_nonpal_1 sense_PE_PGRS54_112_from_start 9 19 - 1.48438 0.00752 0.47 GCGTGGTCGCA Rv0023_pal_1 sense_Rv2279_300_to_stop 11 18 + -3.26582 0.00752 0.531 CGGATAGG Rv0023_pal_1 sense_pks6_423_from_start 17 24 + -3.26582 0.00752 0.531 CGTATCCA Rv0023_pal_1 sense_pks6_424_from_start 17 24 + -3.26582 0.00752 0.531 CGTATCCA Rv0023_pal_1 sense_Rv2279_300_to_stop 11 18 - -3.26582 0.00752 0.531 CCTATCCG Rv0023_pal_1 sense_pks6_423_from_start 17 24 - -3.26582 0.00752 0.531 TGGATACG Rv0023_pal_1 antisense_pks6_431_from_start 24 31 + -3.26582 0.00752 0.531 TGGATACG Rv0023_pal_1 antisense_pks6_430_from_start 24 31 + -3.26582 0.00752 0.531 TGGATACG Rv0023_pal_1 sense_pks6_424_from_start 17 24 - -3.26582 0.00752 0.531 TGGATACG Rv0023_pal_1 antisense_Rv2279_293_to_stop 30 37 + -3.26582 0.00752 0.531 CCTATCCG Rv0023_pal_1 antisense_pks6_431_from_start 24 31 - -3.26582 0.00752 0.531 CGTATCCA Rv0023_pal_1 antisense_pks6_430_from_start 24 31 - -3.26582 0.00752 0.531 CGTATCCA Rv0023_pal_1 antisense_Rv2279_293_to_stop 30 37 - -3.26582 0.00752 0.531 CGGATAGG Rv0691c_nonpal_2 10_up_of_Rv1866 9 32 - -43.4135 0.00753 0.63 CATATCGGTGCCTCCAGCAGAACA Rv1719_nonpal_1 sense_bioB_253_to_stop 9 25 + 0.907895 0.00753 1 CGCCGACCTGGAGGTAA Rv1556_pal_1 4992_down_of_Rv3180c 14 29 + -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 8499_up_of_Rv3186 14 29 + -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 13071_down_of_Rv3190c 14 29 + -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 3353_up_of_Rv3179 14 29 + -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 10034_up_of_Rv3188 14 29 + -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 4999_down_of_Rv3180c 19 34 + -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 13078_down_of_Rv3190c 19 34 + -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 10041_up_of_Rv3188 19 34 + -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 8506_up_of_Rv3186 19 34 + -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 3360_up_of_Rv3179 19 34 + -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 4992_down_of_Rv3180c 14 29 - -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 8499_up_of_Rv3186 14 29 - -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 13071_down_of_Rv3190c 14 29 - -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 3353_up_of_Rv3179 14 29 - -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 10034_up_of_Rv3188 14 29 - -2.08421 0.00754 0.315 TACACCAATCGGTTTA Rv1556_pal_1 8506_up_of_Rv3186 19 34 - -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 10041_up_of_Rv3188 19 34 - -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 3360_up_of_Rv3179 19 34 - -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 4999_down_of_Rv3180c 19 34 - -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv1556_pal_1 13078_down_of_Rv3190c 19 34 - -2.08421 0.00754 0.315 TAAACCGATTGGTGTA Rv2887_pal_1 antisense_frdA_787_from_start 8 22 + -0.2375 0.00754 0.382 GTCGTAATCCTGGAG Rv1776c_nonpal_1 antisense_pyrC_541_to_stop 17 22 - 2.06849 0.00754 0.802 ATCACC Rv1776c_nonpal_1 sense_pyrC_548_to_stop 26 31 + 2.06849 0.00754 0.802 ATCACC Rv2989_nonpal_1 sense_Rv1461_475_from_start 18 38 + -3.48684 0.00755 0.662 GGAGGCTCAAGGAGTCATATT Rv0472c_nonpal_1 sense_Rv2279_300_to_stop 6 16 - -5.64423 0.00756 0.266 TATCCGTATGG Rv2009_nonpal_1 sense_fadE7_118_to_stop 15 35 + -2.88608 0.00756 0.279 CGCTGGAGTACCCGGTCATCC Rv2009_nonpal_1 antisense_fadE7_121_to_stop 3 23 - -2.88608 0.00756 0.279 CGCTGGAGTACCCGGTCATCC Rv2009_pal_1 1662_up_of_Rv2018 2 30 + -0.868613 0.00757 0.142 TATGAATCGGCCTTCTCCAGTGAAATTGA Rv2009_pal_1 1662_up_of_Rv2018 2 30 - -0.868613 0.00757 0.142 TCAATTTCACTGGAGAAGGCCGATTCATA Rv2887_pal_1 sense_metA_384_from_start 4 18 - -0.25 0.00757 0.382 AGCGGAAATCTTGAG Rv2887_pal_1 antisense_frdA_787_from_start 8 22 - -0.25 0.00757 0.382 CTCCAGGATTACGAC Rv1994c_nonpal_1 sense_pks9_325_to_stop 6 20 - 1.89041 0.00757 0.272 TGGAGACGATTGCGT Rv0691c_pal_1 10_up_of_Rv1866 15 26 + 1.6087 0.00757 0.232 GCTGGAGGCACC Rv0691c_pal_1 10_up_of_Rv1866 15 26 - 1.6087 0.00757 0.232 GGTGCCTCCAGC Rv2506_nonpal_1 1662_up_of_Rv2018 1 19 - -6.46809 0.00757 0.621 GGAGAAGGCCGATTCATAG Rv0135c_nonpal_1 antisense_accA1_595_from_start 7 17 + -2.28125 0.00758 0.487 CACAAACCGCT Rv0135c_nonpal_1 sense_accA1_598_from_start 21 31 - -2.28125 0.00758 0.487 CACAAACCGCT Rv3676_nonpal_1 sense_Rv1461_552_from_start 11 31 - -15.0577 0.00758 1 AGGGATTACTGTACCGAAATA Rv3676_nonpal_1 antisense_Rv1461_559_from_start 17 37 + -15.0577 0.00758 1 AGGGATTACTGTACCGAAATA Rv2009_nonpal_1 5189_up_of_Rv3186 9 29 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 1682_down_of_Rv3180c 9 29 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 9761_down_of_Rv3190c 9 29 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 43_up_of_Rv3179 9 29 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 6724_up_of_Rv3188 9 29 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 1688_down_of_Rv3180c 15 35 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 9767_down_of_Rv3190c 15 35 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 49_up_of_Rv3179 15 35 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 6730_up_of_Rv3188 15 35 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 5195_up_of_Rv3186 15 35 + -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 5188_up_of_Rv3186 13 33 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 1681_down_of_Rv3180c 13 33 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 9760_down_of_Rv3190c 13 33 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 42_up_of_Rv3179 13 33 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 6723_up_of_Rv3188 13 33 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 5182_up_of_Rv3186 19 39 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 9754_down_of_Rv3190c 19 39 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 1675_down_of_Rv3180c 19 39 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 6717_up_of_Rv3188 19 39 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv2009_nonpal_1 36_up_of_Rv3179 19 39 - -2.89873 0.00758 0.279 TAAGTACACCGATCAGTATAC Rv1556_nonpal_1 antisense_Rv0370c_389_from_start 17 33 + -8.7234 0.00759 0.717 TGGAGGGGTCGGTCCGC Rv1719_pal_1 antisense_aldA_642_from_start 1 15 - 2.425 0.00759 1 AGTCACGCTTTGGGG Rv0465c_pal_2 sense_mptA_23_from_start 30 37 + -1.13924 0.00759 0.957 TTGGCTAC Rv0465c_pal_2 37_up_of_Rv2172c 30 37 + -1.13924 0.00759 0.957 TTGGCTAC Rv0465c_pal_2 37_up_of_Rv2172c 30 37 - -1.13924 0.00759 0.957 GTAGCCAA Rv0465c_pal_2 sense_mptA_23_from_start 30 37 - -1.13924 0.00759 0.957 GTAGCCAA Rv0135c_nonpal_2 antisense_frdA_787_from_start 7 34 - -27.4894 0.00759 0.464 GGCTACCGCTACCTCCAGGATTACGACC Rv0047c_nonpal_1 antisense_Rv1251c_1309_from_start 6 20 + 1.75 0.00759 0.545 GGTACAGCGGCTCCA Rv0324_nonpal_1 sense_fadE7_118_to_stop 12 19 + -3.64706 0.0076 0.448 TATCGCTG Rv0324_nonpal_1 antisense_fadE7_121_to_stop 19 26 - -3.64706 0.0076 0.448 TATCGCTG Rv0324_nonpal_1 10_up_of_Rv1866 23 30 - -3.64706 0.0076 0.448 TATCGGTG Rv0081_nonpal_2 antisense_Rv0370c_389_from_start 3 24 + -30.1538 0.0076 0.705 TCGATGAGCAGCACTGGAGGGG Rv0158_nonpal_1 sense_Rv2279_300_to_stop 2 26 + -14.8962 0.0076 0.755 TCCACCATACGGATAGGGGATCTCA Rv2887_pal_1 sense_metA_384_from_start 4 18 + -0.2625 0.0076 0.382 CTCAAGATTTCCGCT Rv0465c_pal_2 sense_pks9_325_to_stop 22 29 + -1.1519 0.0076 0.957 ATGGCTAT Rv0465c_pal_2 sense_pks9_325_to_stop 22 29 - -1.1519 0.0076 0.957 ATAGCCAT Rv2034_nonpal_1 antisense_rocA_790_to_stop 27 37 + 3.11765 0.0076 0.359 GTACCCACCCA Rv2034_nonpal_1 sense_rocA_797_to_stop 11 21 - 3.11765 0.0076 0.359 GTACCCACCCA Rv1556_nonpal_1 antisense_pyrC_541_to_stop 22 38 - -8.73404 0.0076 0.717 GGACCAGGGTATTTCGA Rv1556_nonpal_1 sense_pyrC_548_to_stop 10 26 + -8.73404 0.0076 0.717 GGACCAGGGTATTTCGA Rv1816_pal_1 sense_Rv1461_552_from_start 17 29 + 3.4069 0.00761 0.268 GGTACAGTAATCC Rv1816_pal_1 antisense_Rv1461_559_from_start 19 31 + 3.4069 0.00761 0.268 GGATTACTGTACC Rv1816_pal_1 sense_Rv1461_552_from_start 17 29 - 3.4069 0.00761 0.268 GGATTACTGTACC Rv1816_pal_1 antisense_Rv1461_559_from_start 19 31 - 3.4069 0.00761 0.268 GGTACAGTAATCC Rv0653c_nonpal_1 sense_pks6_424_from_start 18 36 + -2.37975 0.00761 0.242 GTATCCAGATCGTGGGTTC Rv0653c_nonpal_1 sense_pks6_423_from_start 18 36 + -2.37975 0.00761 0.242 GTATCCAGATCGTGGGTTC Rv0653c_nonpal_1 antisense_pks6_431_from_start 12 30 - -2.37975 0.00761 0.242 GTATCCAGATCGTGGGTTC Rv0653c_nonpal_1 antisense_pks6_430_from_start 12 30 - -2.37975 0.00761 0.242 GTATCCAGATCGTGGGTTC Rv1473A_nonpal_2 antisense_frdA_787_from_start 4 11 + -4.52055 0.00761 0.415 CGAGGTCG Rv0047c_nonpal_2 sense_mmpL4_1184_to_stop 13 40 + -41.735 0.00762 0.353 ATTTCTGGAGACCAATTCGAAGCTATTT Rv3249c_nonpal_1 sense_fadE7_118_to_stop 24 34 + 1.4375 0.00762 0.47 ACCCGGTCATC Rv3249c_nonpal_1 antisense_fadE7_121_to_stop 4 14 - 1.4375 0.00762 0.47 ACCCGGTCATC Rv3249c_nonpal_1 sense_Rv1278_1158_to_stop 24 34 - 1.4375 0.00762 0.47 AGGTCAGCGAC Rv1719_pal_1 antisense_aldA_642_from_start 1 15 + 2.4125 0.00762 1 CCCCAAAGCGTGACT Rv0135c_nonpal_1 sense_pyrC_548_to_stop 24 34 + -2.3125 0.00762 0.487 CGATCACCGCC Rv0135c_nonpal_1 antisense_pyrC_541_to_stop 14 24 - -2.3125 0.00762 0.487 CGATCACCGCC Rv0880_nonpal_1 13078_down_of_Rv3190c 9 32 + -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 8506_up_of_Rv3186 9 32 + -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 3360_up_of_Rv3179 9 32 + -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 10041_up_of_Rv3188 9 32 + -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 4999_down_of_Rv3180c 9 32 + -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 4992_down_of_Rv3180c 16 39 - -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 10034_up_of_Rv3188 16 39 - -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 8499_up_of_Rv3186 16 39 - -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 3353_up_of_Rv3179 16 39 - -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv0880_nonpal_1 13071_down_of_Rv3190c 16 39 - -10.7895 0.00762 0.189 AAGCACAAAGTACACCAATCGGTT Rv1776c_nonpal_1 sense_metA_384_from_start 10 15 + 1.78082 0.00763 0.802 ATTTCC Rv1776c_nonpal_1 antisense_metA_391_from_start 33 38 - 1.78082 0.00763 0.802 ATTTCC Rv0324_nonpal_1 antisense_rocA_790_to_stop 1 8 - -3.69118 0.00764 0.448 TAGCTATC Rv0324_nonpal_1 sense_pks9_325_to_stop 21 28 - -3.69118 0.00764 0.448 TAGCCATC Rv0767c_pal_1 antisense_gca_467_from_start 12 23 + 3.52475 0.00764 0.989 AGACTTGTGATA Rv0767c_pal_1 antisense_gca_467_from_start 12 23 - 3.52475 0.00764 0.989 TATCACAAGTCT Rv0767c_pal_1 sense_gca_460_from_start 25 36 + 3.52475 0.00764 0.989 TATCACAAGTCT Rv0767c_pal_1 sense_gca_460_from_start 25 36 - 3.52475 0.00764 0.989 AGACTTGTGATA Rv0880_nonpal_1 4999_down_of_Rv3180c 5 28 + -10.8 0.00764 0.189 GTCAAAGCACAAAGTACACCAATC Rv0880_nonpal_1 10041_up_of_Rv3188 5 28 + -10.8 0.00764 0.189 GTCAAAGCACAAAGTACACCAATC Rv0880_nonpal_1 8506_up_of_Rv3186 5 28 + -10.8 0.00764 0.189 GTCAAAGCACAAAGTACACCAATC Rv0880_nonpal_1 3360_up_of_Rv3179 5 28 + -10.8 0.00764 0.189 GTCAAAGCACAAAGTACACCAATC Rv0880_nonpal_1 13078_down_of_Rv3190c 5 28 + -10.8 0.00764 0.189 GTCAAAGCACAAAGTACACCAATC Rv0081_pal_1 antisense_Rv1461_559_from_start 3 18 + -0.253333 0.00764 0.443 TTATTATCGCCGGCAG Rv0081_pal_1 antisense_aldA_642_from_start 14 29 + -0.253333 0.00764 0.443 CTGCTGGAGGTGACGA Rv0081_pal_1 antisense_Rv1461_559_from_start 3 18 - -0.253333 0.00764 0.443 CTGCCGGCGATAATAA Rv0081_pal_1 antisense_aldA_642_from_start 14 29 - -0.253333 0.00764 0.443 TCGTCACCTCCAGCAG Rv0691c_nonpal_1 sense_gca_460_from_start 16 29 - -2.39062 0.00764 0.53 TGATATTGATACGC Rv0691c_nonpal_1 antisense_gca_467_from_start 19 32 + -2.39062 0.00764 0.53 TGATATTGATACGC Rv1404_nonpal_1 4999_down_of_Rv3180c 10 35 - -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 10041_up_of_Rv3188 10 35 - -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 8506_up_of_Rv3186 10 35 - -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 3360_up_of_Rv3179 10 35 - -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 13078_down_of_Rv3190c 10 35 - -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 13071_down_of_Rv3190c 13 38 + -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 4992_down_of_Rv3180c 13 38 + -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 10034_up_of_Rv3188 13 38 + -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 8499_up_of_Rv3186 13 38 + -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv1404_nonpal_1 3353_up_of_Rv3179 13 38 + -1.525 0.00764 0.101 GTAAACCGATTGGTGTACTTTGTGCT Rv0757_pal_1 9767_down_of_Rv3190c 5 18 + 2.46835 0.00764 0.719 GTGTCGGTTATAAG Rv0757_pal_1 6730_up_of_Rv3188 5 18 + 2.46835 0.00764 0.719 GTGTCGGTTATAAG Rv0757_pal_1 5195_up_of_Rv3186 5 18 + 2.46835 0.00764 0.719 GTGTCGGTTATAAG Rv0757_pal_1 49_up_of_Rv3179 5 18 + 2.46835 0.00764 0.719 GTGTCGGTTATAAG Rv0757_pal_1 1688_down_of_Rv3180c 5 18 + 2.46835 0.00764 0.719 GTGTCGGTTATAAG Rv0757_pal_1 9767_down_of_Rv3190c 5 18 - 2.46835 0.00764 0.719 CTTATAACCGACAC Rv0757_pal_1 6730_up_of_Rv3188 5 18 - 2.46835 0.00764 0.719 CTTATAACCGACAC Rv0757_pal_1 5195_up_of_Rv3186 5 18 - 2.46835 0.00764 0.719 CTTATAACCGACAC Rv0757_pal_1 1688_down_of_Rv3180c 5 18 - 2.46835 0.00764 0.719 CTTATAACCGACAC Rv0757_pal_1 49_up_of_Rv3179 5 18 - 2.46835 0.00764 0.719 CTTATAACCGACAC Rv3681c_pal_1 sense_mptA_23_from_start 8 21 + 2.0119 0.00765 0.46 GAGCCATGCTCCAG Rv3681c_pal_1 37_up_of_Rv2172c 8 21 + 2.0119 0.00765 0.46 GAGCCATGCTCCAG Rv3681c_pal_1 sense_mptA_23_from_start 8 21 - 2.0119 0.00765 0.46 CTGGAGCATGGCTC Rv3681c_pal_1 37_up_of_Rv2172c 8 21 - 2.0119 0.00765 0.46 CTGGAGCATGGCTC Rv1353c_nonpal_1 880_up_of_treZ 4 18 - 3 0.00765 0.312 CAGCCCGTTTCAGTT Rv1353c_nonpal_1 antisense_treY_785_to_stop 4 18 - 3 0.00765 0.312 CAGCCCGTTTCAGTT Rv1353c_nonpal_1 antisense_treZ_470_to_stop 4 18 - 3 0.00765 0.312 CAGCCCGTTTCAGTT Rv1353c_nonpal_1 877_up_of_treZ 20 34 + 3 0.00765 0.312 CAGCCCGTTTCAGTT Rv1353c_nonpal_1 sense_treZ_467_to_stop 20 34 + 3 0.00765 0.312 CAGCCCGTTTCAGTT Rv3736_pal_1 antisense_fadE7_121_to_stop 6 20 + 3.17857 0.00765 1 TGACCGGGTACTCCA Rv3736_pal_1 sense_fadE7_118_to_stop 18 32 + 3.17857 0.00765 1 TGGAGTACCCGGTCA Rv3736_pal_1 antisense_fadE7_121_to_stop 6 20 - 3.17857 0.00765 1 TGGAGTACCCGGTCA Rv3736_pal_1 sense_fadE7_118_to_stop 18 32 - 3.17857 0.00765 1 TGACCGGGTACTCCA Rv0602c_pal_1 4999_down_of_Rv3180c 19 26 + -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 13078_down_of_Rv3190c 19 26 + -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 8506_up_of_Rv3186 19 26 + -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 10041_up_of_Rv3188 19 26 + -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 3360_up_of_Rv3179 19 26 + -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 4992_down_of_Rv3180c 22 29 + -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 8499_up_of_Rv3186 22 29 + -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 10034_up_of_Rv3188 22 29 + -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 13071_down_of_Rv3190c 22 29 + -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 3353_up_of_Rv3179 22 29 + -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 4999_down_of_Rv3180c 19 26 - -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 10041_up_of_Rv3188 19 26 - -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 13078_down_of_Rv3190c 19 26 - -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 8506_up_of_Rv3186 19 26 - -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 3360_up_of_Rv3179 19 26 - -2.88608 0.00766 0.17 TTGGTGTA Rv0602c_pal_1 4992_down_of_Rv3180c 22 29 - -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 13071_down_of_Rv3190c 22 29 - -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 8499_up_of_Rv3186 22 29 - -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 3353_up_of_Rv3179 22 29 - -2.88608 0.00766 0.17 TACACCAA Rv0602c_pal_1 10034_up_of_Rv3188 22 29 - -2.88608 0.00766 0.17 TACACCAA Rv0602c_nonpal_1 antisense_aldA_642_from_start 25 36 - -2.26027 0.00766 0.504 GTCAACATCGTC Rv1359_nonpal_1 877_up_of_treZ 13 40 - -16.0096 0.00766 0.364 CAAAAGAACTGAAACGGGCTGGAGGCCC Rv1359_nonpal_1 sense_treZ_467_to_stop 13 40 - -16.0096 0.00766 0.364 CAAAAGAACTGAAACGGGCTGGAGGCCC Rv2250c_nonpal_1 antisense_pks6_430_from_start 21 30 + 1.42029 0.00766 0.482 ATCTGGATAC Rv2250c_nonpal_1 antisense_pks6_431_from_start 21 30 + 1.42029 0.00766 0.482 ATCTGGATAC Rv2250c_nonpal_1 sense_pks6_424_from_start 18 27 - 1.42029 0.00766 0.482 ATCTGGATAC Rv2250c_nonpal_1 sense_pks6_423_from_start 18 27 - 1.42029 0.00766 0.482 ATCTGGATAC Rv2359_nonpal_1 antisense_Rv1461_416_from_start 12 39 - -25.25 0.00766 0.303 GAAGCAGAGATTAGTAGCTGGAGTAGCC Rv1167c_nonpal_1 sense_pks9_325_to_stop 6 20 + -7.48077 0.00767 0.94 ACGCAATCGTCTCCA Rv0465c_nonpal_1 sense_Rv2963_537_to_stop 6 29 - -19.5172 0.00767 0.793 CGATTCGGGTACCCATGCCGCGAT Rv3676_pal_1 4999_down_of_Rv3180c 7 22 + -5.89524 0.00768 0.626 CAAAGCACAAAGTACA Rv3676_pal_1 8506_up_of_Rv3186 7 22 + -5.89524 0.00768 0.626 CAAAGCACAAAGTACA Rv3676_pal_1 13078_down_of_Rv3190c 7 22 + -5.89524 0.00768 0.626 CAAAGCACAAAGTACA Rv3676_pal_1 3360_up_of_Rv3179 7 22 + -5.89524 0.00768 0.626 CAAAGCACAAAGTACA Rv3676_pal_1 10041_up_of_Rv3188 7 22 + -5.89524 0.00768 0.626 CAAAGCACAAAGTACA Rv3676_pal_1 4999_down_of_Rv3180c 7 22 - -5.89524 0.00768 0.626 TGTACTTTGTGCTTTG Rv3676_pal_1 8506_up_of_Rv3186 7 22 - -5.89524 0.00768 0.626 TGTACTTTGTGCTTTG Rv3676_pal_1 3360_up_of_Rv3179 7 22 - -5.89524 0.00768 0.626 TGTACTTTGTGCTTTG Rv3676_pal_1 13078_down_of_Rv3190c 7 22 - -5.89524 0.00768 0.626 TGTACTTTGTGCTTTG Rv3676_pal_1 10041_up_of_Rv3188 7 22 - -5.89524 0.00768 0.626 TGTACTTTGTGCTTTG Rv3849_pal_1 sense_pks9_325_to_stop 22 29 + 3.68831 0.00768 1 ATGGCTAT Rv3849_pal_1 sense_pks9_325_to_stop 22 29 - 3.68831 0.00768 1 ATAGCCAT Rv2009_nonpal_1 sense_rocA_797_to_stop 6 26 - -2.94937 0.00768 0.279 TATTGGTACCCACCCACTGCC Rv2887_nonpal_1 sense_PPE34_3066_to_stop 25 39 + -2.875 0.00768 0.519 TACGTGACAGTGAGT Rv2887_nonpal_1 sense_PPE34_1664_from_start 25 39 + -2.875 0.00768 0.519 TACGTGACAGTGAGT Rv2887_nonpal_1 sense_PPE34_1439_from_start 25 39 + -2.875 0.00768 0.519 TACGTGACAGTGAGT Rv1219c_nonpal_1 sense_PPE24_1577_to_stop 12 26 + -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv1219c_nonpal_1 sense_PPE24_1277_to_stop 12 26 + -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv1219c_nonpal_1 sense_PPE24_1352_to_stop 12 26 + -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv1219c_nonpal_1 antisense_PPE24_1345_to_stop 22 36 - -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv1219c_nonpal_1 antisense_PPE24_1570_to_stop 22 36 - -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv1219c_nonpal_1 antisense_PPE24_1270_to_stop 22 36 - -1.78481 0.00769 0.599 CCCGCGGGTATCACA Rv0302_nonpal_2 antisense_cobK_311_from_start 13 23 - -2.87179 0.0077 1 CGGTACCGCCA Rv0302_nonpal_2 sense_cobK_304_from_start 25 35 + -2.87179 0.0077 1 CGGTACCGCCA Rv0465c_nonpal_1 37_up_of_Rv2172c 4 27 + -19.5402 0.0077 0.793 CTCCGAGCCATGCTCCAGCGGTTG Rv0465c_nonpal_1 sense_mptA_23_from_start 4 27 + -19.5402 0.0077 0.793 CTCCGAGCCATGCTCCAGCGGTTG Rv1404_nonpal_1 antisense_aldA_642_from_start 10 35 - -1.55 0.0077 0.101 TCAACATCGTCACCTCCAGCAGTCAC Rv0967_nonpal_1 sense_cobK_304_from_start 4 24 - 3.18033 0.0077 1 GGATCCCACGGCGGGCGAGCC Rv1423_nonpal_2 antisense_frdA_787_from_start 4 23 - -24.9787 0.0077 1 CCTCCAGGATTACGACCTCG Rv3246c_pal_1 sense_fadE7_118_to_stop 10 25 + 2.02439 0.0077 0.178 GATATCGCTGGAGTAC Rv3246c_pal_1 antisense_fadE7_121_to_stop 13 28 + 2.02439 0.0077 0.178 GTACTCCAGCGATATC Rv3246c_pal_1 sense_fadE7_118_to_stop 10 25 - 2.02439 0.0077 0.178 GTACTCCAGCGATATC Rv3246c_pal_1 antisense_fadE7_121_to_stop 13 28 - 2.02439 0.0077 0.178 GATATCGCTGGAGTAC Rv1956_nonpal_1 1662_up_of_Rv2018 14 34 - -2.84884 0.00771 0.306 TGTATCAATTTCACTGGAGAA Rv0653c_pal_1 antisense_Rv1461_416_from_start 5 28 + 0.0886076 0.00772 0.186 ATTGTGCGGCTACTCCAGCTACTA Rv0653c_pal_1 antisense_Rv1461_416_from_start 5 28 - 0.0886076 0.00772 0.186 TAGTAGCTGGAGTAGCCGCACAAT Rv0135c_nonpal_1 sense_PE_PGRS57_112_from_start 18 28 - -2.375 0.00772 0.487 CCAGCACCTGC Rv0135c_nonpal_1 sense_PE_PGRS54_112_from_start 18 28 - -2.375 0.00772 0.487 CCAGCACCTGC Rv1033c_nonpal_1 36_up_of_Rv3179 5 19 + -5.11392 0.00773 0.66 CACGCCGACTCCTTG Rv1033c_nonpal_1 1675_down_of_Rv3180c 5 19 + -5.11392 0.00773 0.66 CACGCCGACTCCTTG Rv1033c_nonpal_1 9754_down_of_Rv3190c 5 19 + -5.11392 0.00773 0.66 CACGCCGACTCCTTG Rv1033c_nonpal_1 6717_up_of_Rv3188 5 19 + -5.11392 0.00773 0.66 CACGCCGACTCCTTG Rv1033c_nonpal_1 5182_up_of_Rv3186 5 19 + -5.11392 0.00773 0.66 CACGCCGACTCCTTG Rv2034_nonpal_1 antisense_aldA_642_from_start 7 17 - 3.07353 0.00773 0.359 GCAGTCACGCT Rv0023_pal_2 antisense_cobK_311_from_start 9 24 + 1.36364 0.00773 0.378 ATGATGGCGGTACCGG Rv0023_pal_2 antisense_cobK_311_from_start 9 24 - 1.36364 0.00773 0.378 CCGGTACCGCCATCAT Rv0023_pal_2 sense_cobK_304_from_start 24 39 + 1.36364 0.00773 0.378 CCGGTACCGCCATCAT Rv0023_pal_2 sense_cobK_304_from_start 24 39 - 1.36364 0.00773 0.378 ATGATGGCGGTACCGG Rv2324_nonpal_1 sense_pks9_325_to_stop 5 23 + 2.82609 0.00773 0.364 TACGCAATCGTCTCCAGAT Rv3574_nonpal_2 sense_Rv2963_537_to_stop 12 39 + -43.2051 0.00774 0.482 GCATGGGTACCCGAATCGTTCTGGCAGA Rv3574_nonpal_2 antisense_Rv2963_530_to_stop 9 36 - -43.2051 0.00774 0.482 GCATGGGTACCCGAATCGTTCTGGCAGA Rv0653c_nonpal_1 antisense_gca_467_from_start 6 24 + -2.44304 0.00774 0.243 GCCGTAAGACTTGTGATAT Rv3249c_nonpal_2 antisense_aldA_642_from_start 25 39 + 0.493333 0.00774 0.666 GACGATGTTGACAAC Rv1219c_nonpal_1 877_up_of_treZ 25 39 - -1.81013 0.00774 0.599 AAAAGAACTGAAACG Rv1219c_nonpal_1 sense_treZ_467_to_stop 25 39 - -1.81013 0.00774 0.599 AAAAGAACTGAAACG Rv0081_nonpal_1 antisense_mmpL4_1187_to_stop 4 18 + -2.66667 0.00774 0.467 CTTCGAATTGGTCTC Rv0081_nonpal_1 sense_mmpL4_1184_to_stop 20 34 - -2.66667 0.00774 0.467 CTTCGAATTGGTCTC Rv0302_nonpal_1 880_up_of_treZ 16 30 - 1.85507 0.00775 0.43 GTGGGGGGCCTCCAG Rv0302_nonpal_1 antisense_treZ_470_to_stop 16 30 - 1.85507 0.00775 0.43 GTGGGGGGCCTCCAG Rv0302_nonpal_1 antisense_treY_785_to_stop 16 30 - 1.85507 0.00775 0.43 GTGGGGGGCCTCCAG Rv0302_nonpal_1 93_up_of_lpqG 5 19 + 1.85507 0.00775 0.43 ATTGTAGGGCCCGTC Rv0302_nonpal_1 877_up_of_treZ 8 22 + 1.85507 0.00775 0.43 GTGGGGGGCCTCCAG Rv0302_nonpal_1 sense_treZ_467_to_stop 8 22 + 1.85507 0.00775 0.43 GTGGGGGGCCTCCAG Rv0195_nonpal_1 sense_gca_460_from_start 7 20 + -3.62766 0.00776 1 GACATGCTGGCGTA Rv2506_pal_1 9760_down_of_Rv3190c 3 18 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 6723_up_of_Rv3188 3 18 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 42_up_of_Rv3179 3 18 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 1681_down_of_Rv3180c 3 18 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 5188_up_of_Rv3186 3 18 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 9754_down_of_Rv3190c 9 24 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 1675_down_of_Rv3180c 9 24 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 6717_up_of_Rv3188 9 24 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 36_up_of_Rv3179 9 24 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 5182_up_of_Rv3186 9 24 + -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 1682_down_of_Rv3180c 24 39 + -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 6724_up_of_Rv3188 24 39 + -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 43_up_of_Rv3179 24 39 + -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 5189_up_of_Rv3186 24 39 + -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 9761_down_of_Rv3190c 24 39 + -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 1681_down_of_Rv3180c 3 18 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 6723_up_of_Rv3188 3 18 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 42_up_of_Rv3179 3 18 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 5188_up_of_Rv3186 3 18 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 9760_down_of_Rv3190c 3 18 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 9754_down_of_Rv3190c 9 24 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 6717_up_of_Rv3188 9 24 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 36_up_of_Rv3179 9 24 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 5182_up_of_Rv3186 9 24 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 1675_down_of_Rv3180c 9 24 - -2.75789 0.00776 0.374 GTATACAAGGAGTCGG Rv2506_pal_1 6724_up_of_Rv3188 24 39 - -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 43_up_of_Rv3179 24 39 - -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 5189_up_of_Rv3186 24 39 - -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 1682_down_of_Rv3180c 24 39 - -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2506_pal_1 9761_down_of_Rv3190c 24 39 - -2.75789 0.00776 0.374 CCGACTCCTTGTATAC Rv2989_nonpal_1 antisense_pks6_431_from_start 19 39 + -3.61842 0.00777 0.662 CGATCTGGATACGCTGTTATC Rv2989_nonpal_1 antisense_pks6_430_from_start 19 39 + -3.61842 0.00777 0.662 CGATCTGGATACGCTGTTATC Rv2989_nonpal_1 sense_pks6_424_from_start 9 29 - -3.61842 0.00777 0.662 CGATCTGGATACGCTGTTATC Rv2989_nonpal_1 sense_pks6_423_from_start 9 29 - -3.61842 0.00777 0.662 CGATCTGGATACGCTGTTATC Rv1556_pal_1 sense_gca_460_from_start 7 22 + -2.2 0.00777 0.319 GACATGCTGGCGTATC Rv1556_pal_1 sense_gca_460_from_start 7 22 - -2.2 0.00777 0.319 GATACGCCAGCATGTC Rv3488_nonpal_1 1662_up_of_Rv2018 22 35 - -6.14706 0.00778 0.417 TTGTATCAATTTCA Rv3830c_nonpal_1 antisense_gca_467_from_start 8 22 - -0.959459 0.00779 1 ATCACAAGTCTTACG Rv3830c_nonpal_1 sense_gca_460_from_start 26 40 + -0.959459 0.00779 1 ATCACAAGTCTTACG Rv0081_nonpal_2 sense_pyrC_548_to_stop 17 38 + -30.3077 0.00779 0.705 GGTATTTCGATCACCGCCGAGG Rv0081_nonpal_2 antisense_pyrC_541_to_stop 10 31 - -30.3077 0.00779 0.705 GGTATTTCGATCACCGCCGAGG Rv0273c_nonpal_2 antisense_PPE34_1661_from_start 1 26 + -45.812 0.0078 0.411 TCACTGTCACGTAATCTGGAGGGAAT Rv0273c_nonpal_2 antisense_aldA_642_from_start 2 27 + -45.812 0.0078 0.411 CCCAAAGCGTGACTGCTGGAGGTGAC Rv0273c_nonpal_2 sense_PPE34_3066_to_stop 12 37 - -45.812 0.0078 0.411 TCACTGTCACGTAATCTGGAGGGAAT Rv0273c_nonpal_2 sense_PPE34_1664_from_start 12 37 - -45.812 0.0078 0.411 TCACTGTCACGTAATCTGGAGGGAAT Rv0273c_nonpal_2 sense_PPE34_1439_from_start 12 37 - -45.812 0.0078 0.411 TCACTGTCACGTAATCTGGAGGGAAT Rv2009_pal_1 sense_Rv1461_552_from_start 1 29 + -0.956204 0.0078 0.142 TTTCAAGGAATATTTCGGTACAGTAATCC Rv2009_pal_1 sense_Rv1461_552_from_start 1 29 - -0.956204 0.0078 0.142 GGATTACTGTACCGAAATATTCCTTGAAA Rv3681c_pal_1 sense_PE_PGRS57_112_from_start 8 21 + 1.95238 0.0078 0.46 GTGCGACCACGCAG Rv3681c_pal_1 sense_PE_PGRS54_112_from_start 8 21 + 1.95238 0.0078 0.46 GTGCGACCACGCAG Rv3681c_pal_1 sense_PE_PGRS57_112_from_start 8 21 - 1.95238 0.0078 0.46 CTGCGTGGTCGCAC Rv3681c_pal_1 sense_PE_PGRS54_112_from_start 8 21 - 1.95238 0.0078 0.46 CTGCGTGGTCGCAC Rv0135c_nonpal_2 sense_mmpL4_1184_to_stop 12 39 + -27.6596 0.0078 0.464 GATTTCTGGAGACCAATTCGAAGCTATT Rv2011c_nonpal_1 antisense_cobK_311_from_start 6 24 + 2.75714 0.00781 0.776 GCGATGATGGCGGTACCGG Rv2011c_nonpal_1 antisense_Rv3282_217_to_stop 19 37 - 2.75714 0.00781 0.776 CCTTCGGCCTCCGATCTGG Rv2011c_nonpal_1 447_down_of_accE5 19 37 - 2.75714 0.00781 0.776 CCTTCGGCCTCCGATCTGG Rv1423_pal_1 sense_Rv2038c_183_from_start 14 25 + 2.79452 0.00781 1 TGGGCGTATCCG Rv1423_pal_1 sense_Rv2038c_183_from_start 14 25 - 2.79452 0.00781 1 CGGATACGCCCA Rv0967_nonpal_1 antisense_Rv0370c_389_from_start 7 27 - 3.14754 0.00781 1 CGACCCCTCCAGTGCTGCTCA Rv3066_nonpal_1 sense_mptA_23_from_start 11 30 + -2.34483 0.00782 1 CCATGCTCCAGCGGTTGATT Rv3066_nonpal_1 37_up_of_Rv2172c 11 30 + -2.34483 0.00782 1 CCATGCTCCAGCGGTTGATT Rv0081_nonpal_2 sense_PPE34_1664_from_start 14 35 + -30.3365 0.00782 0.705 TCCCTCCAGATTACGTGACAGT Rv0081_nonpal_2 sense_PPE34_3066_to_stop 14 35 + -30.3365 0.00782 0.705 TCCCTCCAGATTACGTGACAGT Rv0081_nonpal_2 sense_PPE34_1439_from_start 14 35 + -30.3365 0.00782 0.705 TCCCTCCAGATTACGTGACAGT Rv0081_nonpal_2 antisense_PPE34_1661_from_start 3 24 - -30.3365 0.00782 0.705 TCCCTCCAGATTACGTGACAGT Rv0691c_nonpal_1 sense_cobK_304_from_start 25 38 - -2.51562 0.00782 0.53 TGATGGCGGTACCG Rv0691c_nonpal_1 antisense_cobK_311_from_start 10 23 + -2.51562 0.00782 0.53 TGATGGCGGTACCG Rv0678_pal_2 antisense_Rv1461_416_from_start 6 21 + -0.133333 0.00782 0.342 TTGTGCGGCTACTCCA Rv0678_pal_2 antisense_Rv1461_416_from_start 6 21 - -0.133333 0.00782 0.342 TGGAGTAGCCGCACAA Rv2250c_nonpal_1 sense_Rv2279_300_to_stop 8 17 + 1.33333 0.00783 0.482 ATACGGATAG Rv2250c_nonpal_1 antisense_Rv2279_293_to_stop 31 40 - 1.33333 0.00783 0.482 ATACGGATAG Rv0135c_pal_1 sense_accA1_598_from_start 3 12 + 1.04688 0.00783 0.301 ACGATACGCT Rv0135c_pal_1 sense_accA1_598_from_start 3 12 - 1.04688 0.00783 0.301 AGCGTATCGT Rv0135c_pal_1 antisense_accA1_595_from_start 26 35 + 1.04688 0.00783 0.301 AGCGTATCGT Rv0135c_pal_1 antisense_accA1_595_from_start 26 35 - 1.04688 0.00783 0.301 ACGATACGCT Rv3765c_nonpal_1 sense_fadE7_118_to_stop 15 34 - -11.3579 0.00784 0.635 GATGACCGGGTACTCCAGCG Rv3765c_nonpal_1 antisense_fadE7_121_to_stop 4 23 + -11.3579 0.00784 0.635 GATGACCGGGTACTCCAGCG Rv2788_pal_2 antisense_mmpL4_1187_to_stop 8 28 + -4.69792 0.00784 0.723 GAATTGGTCTCCAGAAATCAT Rv2788_pal_2 sense_mmpL4_1184_to_stop 10 30 + -4.69792 0.00784 0.723 ATGATTTCTGGAGACCAATTC Rv2788_pal_2 antisense_mmpL4_1187_to_stop 8 28 - -4.69792 0.00784 0.723 ATGATTTCTGGAGACCAATTC Rv2788_pal_2 sense_mmpL4_1184_to_stop 10 30 - -4.69792 0.00784 0.723 GAATTGGTCTCCAGAAATCAT Rv3416_nonpal_1 10_up_of_Rv1866 8 32 + -9.94845 0.00785 0.561 CTGTTCTGCTGGAGGCACCGATATG Rv1353c_pal_1 antisense_frdA_787_from_start 13 23 + 4.12121 0.00786 0.334 AATCCTGGAGG Rv1353c_pal_1 antisense_frdA_787_from_start 13 23 - 4.12121 0.00786 0.334 CCTCCAGGATT Rv0678_pal_2 antisense_Rv2279_293_to_stop 10 25 + -0.146667 0.00786 0.342 ATCGATGTGTACTGAG Rv0678_pal_2 sense_Rv2279_300_to_stop 23 38 + -0.146667 0.00786 0.342 CTCAGTACACATCGAT Rv0678_pal_2 antisense_Rv2279_293_to_stop 10 25 - -0.146667 0.00786 0.342 CTCAGTACACATCGAT Rv0678_pal_2 sense_Rv2279_300_to_stop 23 38 - -0.146667 0.00786 0.342 ATCGATGTGTACTGAG Rv1473A_nonpal_1 antisense_accA1_595_from_start 1 14 - -8.32877 0.00786 0.449 GGTTTGTGTTGCGG Rv1473A_nonpal_1 sense_accA1_598_from_start 24 37 + -8.32877 0.00786 0.449 GGTTTGTGTTGCGG Rv3849_nonpal_1 93_up_of_lpqG 16 27 + -3.87671 0.00787 0.735 CGTCGATGCCAG Rv2359_pal_1 sense_mmpL4_1184_to_stop 2 22 + -17.019 0.00787 0.148 GGATTTTGATGATTTCTGGAG Rv2359_pal_1 antisense_mmpL4_1187_to_stop 16 36 + -17.019 0.00787 0.148 CTCCAGAAATCATCAAAATCC Rv2359_pal_1 sense_mmpL4_1184_to_stop 2 22 - -17.019 0.00787 0.148 CTCCAGAAATCATCAAAATCC Rv2359_pal_1 antisense_mmpL4_1187_to_stop 16 36 - -17.019 0.00787 0.148 GGATTTTGATGATTTCTGGAG Rv1956_pal_1 antisense_Rv2279_293_to_stop 12 19 + -1.59302 0.00787 0.234 CGATGTGT Rv1956_pal_1 antisense_Rv2279_293_to_stop 12 19 - -1.59302 0.00787 0.234 ACACATCG Rv1956_pal_1 sense_Rv2279_300_to_stop 29 36 + -1.59302 0.00787 0.234 ACACATCG Rv1956_pal_1 sense_Rv2279_300_to_stop 29 36 - -1.59302 0.00787 0.234 CGATGTGT Rv0757_pal_1 antisense_Rv2963_530_to_stop 10 23 + 2.39241 0.00787 0.719 CTGCCAGAACGATT Rv0757_pal_1 antisense_Rv2963_530_to_stop 10 23 - 2.39241 0.00787 0.719 AATCGTTCTGGCAG Rv0757_pal_1 sense_Rv2963_537_to_stop 25 38 + 2.39241 0.00787 0.719 AATCGTTCTGGCAG Rv0757_pal_1 sense_Rv2963_537_to_stop 25 38 - 2.39241 0.00787 0.719 CTGCCAGAACGATT Rv1219c_nonpal_2 antisense_pyrC_541_to_stop 5 32 + -46.6068 0.00787 0.596 GGTGACCTCGGCGGTGATCGAAATACCC Rv3488_pal_1 5189_up_of_Rv3186 4 11 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 1682_down_of_Rv3180c 4 11 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 9761_down_of_Rv3190c 4 11 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 43_up_of_Rv3179 4 11 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 6724_up_of_Rv3188 4 11 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 5195_up_of_Rv3186 10 17 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 1688_down_of_Rv3180c 10 17 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 9767_down_of_Rv3190c 10 17 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 49_up_of_Rv3179 10 17 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 6730_up_of_Rv3188 10 17 + -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 5189_up_of_Rv3186 4 11 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 1682_down_of_Rv3180c 4 11 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 9761_down_of_Rv3190c 4 11 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 43_up_of_Rv3179 4 11 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 6724_up_of_Rv3188 4 11 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 9767_down_of_Rv3190c 10 17 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 49_up_of_Rv3179 10 17 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 6730_up_of_Rv3188 10 17 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 1688_down_of_Rv3180c 10 17 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 5195_up_of_Rv3186 10 17 - -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 5188_up_of_Rv3186 31 38 + -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 9760_down_of_Rv3190c 31 38 + -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 1681_down_of_Rv3180c 31 38 + -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 42_up_of_Rv3179 31 38 + -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 6723_up_of_Rv3188 31 38 + -3.44118 0.00788 0.334 TTATAACC Rv3488_pal_1 5188_up_of_Rv3186 31 38 - -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 9760_down_of_Rv3190c 31 38 - -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 1681_down_of_Rv3180c 31 38 - -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 6723_up_of_Rv3188 31 38 - -3.44118 0.00788 0.334 GGTTATAA Rv3488_pal_1 42_up_of_Rv3179 31 38 - -3.44118 0.00788 0.334 GGTTATAA Rv3249c_nonpal_2 sense_bioB_253_to_stop 1 15 - 0.413333 0.00789 0.666 GTCGGCGAACGGGGT Rv3765c_nonpal_1 antisense_aldA_642_from_start 5 24 + -11.3895 0.00789 0.635 AAAGCGTGACTGCTGGAGGT Rv2887_pal_1 sense_PE_PGRS57_112_from_start 12 26 + -0.375 0.00789 0.382 GACCACGCAGGTGCT Rv2887_pal_1 sense_PE_PGRS54_112_from_start 12 26 + -0.375 0.00789 0.382 GACCACGCAGGTGCT Rv2887_pal_1 sense_PE_PGRS57_112_from_start 12 26 - -0.375 0.00789 0.382 AGCACCTGCGTGGTC Rv2887_pal_1 sense_PE_PGRS54_112_from_start 12 26 - -0.375 0.00789 0.382 AGCACCTGCGTGGTC Rv1816_nonpal_1 antisense_aldA_642_from_start 18 34 + 1.66154 0.0079 0.349 TGGAGGTGACGATGTTG Rv1956_pal_1 9761_down_of_Rv3190c 8 15 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 1682_down_of_Rv3180c 8 15 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 43_up_of_Rv3179 8 15 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 6724_up_of_Rv3188 8 15 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 5189_up_of_Rv3186 8 15 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 9767_down_of_Rv3190c 14 21 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 1688_down_of_Rv3180c 14 21 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 49_up_of_Rv3179 14 21 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 6730_up_of_Rv3188 14 21 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 5195_up_of_Rv3186 14 21 + -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 9761_down_of_Rv3190c 8 15 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 1682_down_of_Rv3180c 8 15 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 43_up_of_Rv3179 8 15 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 6724_up_of_Rv3188 8 15 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 5189_up_of_Rv3186 8 15 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 1688_down_of_Rv3180c 14 21 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 9767_down_of_Rv3190c 14 21 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 49_up_of_Rv3179 14 21 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 6730_up_of_Rv3188 14 21 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 5195_up_of_Rv3186 14 21 - -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 9760_down_of_Rv3190c 27 34 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 1681_down_of_Rv3180c 27 34 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 42_up_of_Rv3179 27 34 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 6723_up_of_Rv3188 27 34 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 5188_up_of_Rv3186 27 34 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 5182_up_of_Rv3186 33 40 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 9754_down_of_Rv3190c 33 40 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 6717_up_of_Rv3188 33 40 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 36_up_of_Rv3179 33 40 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 1675_down_of_Rv3180c 33 40 + -1.65116 0.0079 0.234 GTACTTAT Rv1956_pal_1 9760_down_of_Rv3190c 27 34 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 42_up_of_Rv3179 27 34 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 6723_up_of_Rv3188 27 34 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 1681_down_of_Rv3180c 27 34 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 5188_up_of_Rv3186 27 34 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 5182_up_of_Rv3186 33 40 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 9754_down_of_Rv3190c 33 40 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 36_up_of_Rv3179 33 40 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 6717_up_of_Rv3188 33 40 - -1.65116 0.0079 0.234 ATAAGTAC Rv1956_pal_1 1675_down_of_Rv3180c 33 40 - -1.65116 0.0079 0.234 ATAAGTAC Rv0275c_nonpal_1 sense_fadE7_118_to_stop 3 28 + -16.5577 0.0079 0.26 GCAACGGGATATCGCTGGAGTACCCG Rv0275c_nonpal_1 antisense_fadE7_121_to_stop 10 35 - -16.5577 0.0079 0.26 GCAACGGGATATCGCTGGAGTACCCG Rv1033c_nonpal_1 sense_PE_PGRS57_112_from_start 19 33 - -5.21519 0.0079 0.66 CGCAGCCAGCACCTG Rv1033c_nonpal_1 sense_PE_PGRS54_112_from_start 19 33 - -5.21519 0.0079 0.66 CGCAGCCAGCACCTG Rv1556_nonpal_1 antisense_Rv2279_293_to_stop 16 32 - -8.92553 0.0079 0.717 AGGGGATCTCAGTACAC Rv1556_nonpal_1 sense_Rv2279_300_to_stop 16 32 + -8.92553 0.0079 0.717 AGGGGATCTCAGTACAC Rv3849_pal_1 antisense_rocA_790_to_stop 14 21 + 3.46753 0.0079 1 GCGGCCGA Rv3849_pal_1 antisense_rocA_790_to_stop 14 21 - 3.46753 0.0079 1 TCGGCCGC Rv3849_pal_1 sense_rocA_797_to_stop 27 34 + 3.46753 0.0079 1 TCGGCCGC Rv3849_pal_1 sense_rocA_797_to_stop 27 34 - 3.46753 0.0079 1 GCGGCCGA Rv1473A_nonpal_1 sense_Rv1461_552_from_start 7 20 + -8.35616 0.00791 0.449 GGAATATTTCGGTA Rv2788_pal_1 1662_up_of_Rv2018 9 30 + -4.83333 0.00791 0.332 CGGCCTTCTCCAGTGAAATTGA Rv2788_pal_1 1662_up_of_Rv2018 9 30 - -4.83333 0.00791 0.332 TCAATTTCACTGGAGAAGGCCG Rv1167c_nonpal_1 sense_PPE34_1664_from_start 5 19 + -7.625 0.00791 0.94 TCCCCGGATTCCCTC Rv1167c_nonpal_1 sense_PPE34_1439_from_start 5 19 + -7.625 0.00791 0.94 TCCCCGGATTCCCTC Rv1167c_nonpal_1 sense_mptA_23_from_start 5 19 + -7.625 0.00791 0.94 TCCGAGCCATGCTCC Rv1167c_nonpal_1 sense_PPE34_3066_to_stop 5 19 + -7.625 0.00791 0.94 TCCCCGGATTCCCTC Rv1167c_nonpal_1 37_up_of_Rv2172c 5 19 + -7.625 0.00791 0.94 TCCGAGCCATGCTCC Rv1167c_nonpal_1 antisense_PPE34_1661_from_start 19 33 - -7.625 0.00791 0.94 TCCCCGGATTCCCTC Rv2009_pal_1 37_up_of_Rv2172c 5 33 + -1 0.00792 0.142 TCCGAGCCATGCTCCAGCGGTTGATTTGG Rv2009_pal_1 sense_mptA_23_from_start 5 33 + -1 0.00792 0.142 TCCGAGCCATGCTCCAGCGGTTGATTTGG Rv2009_pal_1 37_up_of_Rv2172c 5 33 - -1 0.00792 0.142 CCAAATCAACCGCTGGAGCATGGCTCGGA Rv2009_pal_1 sense_mptA_23_from_start 5 33 - -1 0.00792 0.142 CCAAATCAACCGCTGGAGCATGGCTCGGA Rv1473A_nonpal_2 sense_pks6_424_from_start 24 31 - -5.08219 0.00793 0.415 CACGATCT Rv1473A_nonpal_2 sense_pks6_423_from_start 24 31 - -5.08219 0.00793 0.415 CACGATCT Rv1473A_nonpal_2 antisense_pks6_431_from_start 17 24 + -5.08219 0.00793 0.415 CACGATCT Rv1473A_nonpal_2 antisense_pks6_430_from_start 17 24 + -5.08219 0.00793 0.415 CACGATCT Rv1816_pal_2 sense_Rv1461_475_from_start 2 10 + -3.0411 0.00793 0.502 AGATCAGAG Rv1816_pal_2 sense_Rv1461_475_from_start 2 10 - -3.0411 0.00793 0.502 CTCTGATCT Rv1816_pal_2 antisense_Rv1461_472_from_start 28 36 + -3.0411 0.00793 0.502 CTCTGATCT Rv1816_pal_2 antisense_Rv1461_472_from_start 28 36 - -3.0411 0.00793 0.502 AGATCAGAG Rv2642_nonpal_1 5188_up_of_Rv3186 15 39 + -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 1681_down_of_Rv3180c 15 39 + -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 9760_down_of_Rv3190c 15 39 + -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 42_up_of_Rv3179 15 39 + -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 6723_up_of_Rv3188 15 39 + -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 5189_up_of_Rv3186 3 27 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 1682_down_of_Rv3180c 3 27 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 9761_down_of_Rv3190c 3 27 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 43_up_of_Rv3179 3 27 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 6724_up_of_Rv3188 3 27 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 5195_up_of_Rv3186 9 33 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 1688_down_of_Rv3180c 9 33 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 49_up_of_Rv3179 9 33 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 9767_down_of_Rv3190c 9 33 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2642_nonpal_1 6730_up_of_Rv3188 9 33 - -6.5814 0.00793 0.254 ATACTGATCGGTGTACTTATAACCG Rv2374c_nonpal_1 sense_metA_384_from_start 5 32 + -14.25 0.00793 0.553 TCAAGATTTCCGCTGATCTCGATACGTG Rv3416_nonpal_1 antisense_rocA_790_to_stop 1 25 - -10 0.00794 0.561 AATATCGGCCGCTACCATAGCTATC Rv3681c_nonpal_1 antisense_pks6_431_from_start 21 40 + -2.94937 0.00795 0.456 ATCTGGATACGCTGTTATCG Rv3681c_nonpal_1 antisense_pks6_430_from_start 21 40 + -2.94937 0.00795 0.456 ATCTGGATACGCTGTTATCG Rv3681c_nonpal_1 sense_pks6_423_from_start 8 27 - -2.94937 0.00795 0.456 ATCTGGATACGCTGTTATCG Rv3681c_nonpal_1 sense_pks6_424_from_start 8 27 - -2.94937 0.00795 0.456 ATCTGGATACGCTGTTATCG Rv2324_nonpal_2 antisense_cobK_311_from_start 4 18 - -2.07229 0.00795 0.669 CCGCCATCATCGCGG Rv1828_nonpal_1 antisense_Rv3282_217_to_stop 3 26 - -12 0.00795 0.504 CGATCTGGAGGCTTACCTGGCCAG Rv1828_nonpal_1 447_down_of_accE5 3 26 - -12 0.00795 0.504 CGATCTGGAGGCTTACCTGGCCAG Rv3249c_nonpal_2 sense_accA1_598_from_start 2 16 + 0.373333 0.00796 0.666 GACGATACGCTATTC Rv3249c_nonpal_2 antisense_accA1_595_from_start 22 36 - 0.373333 0.00796 0.666 GACGATACGCTATTC Rv2506_nonpal_1 antisense_frdA_787_from_start 11 29 + -6.69149 0.00797 0.621 GTAATCCTGGAGGTAGCGG Rv0818_nonpal_1 5189_up_of_Rv3186 20 40 - -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 9761_down_of_Rv3190c 20 40 - -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 43_up_of_Rv3179 20 40 - -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 6724_up_of_Rv3188 20 40 - -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 1682_down_of_Rv3180c 20 40 - -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 1681_down_of_Rv3180c 2 22 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 5188_up_of_Rv3186 2 22 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 9760_down_of_Rv3190c 2 22 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 6723_up_of_Rv3188 2 22 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 42_up_of_Rv3179 2 22 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 1675_down_of_Rv3180c 8 28 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 5182_up_of_Rv3186 8 28 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 36_up_of_Rv3179 8 28 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 9754_down_of_Rv3190c 8 28 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv0818_nonpal_1 6717_up_of_Rv3188 8 28 + -7.69149 0.00797 0.496 GCCGACTCCTTGTATACTGAT Rv1353c_pal_2 sense_accA1_598_from_start 14 40 + -42.094 0.00797 0.385 TTCCTGGAGCGGTTTGTGTTGCGGCCC Rv1353c_pal_2 sense_accA1_598_from_start 14 40 - -42.094 0.00797 0.385 GGGCCGCAACACAAACCGCTCCAGGAA Rv0275c_nonpal_1 antisense_Rv1251c_1309_from_start 8 33 + -16.6058 0.00797 0.26 TACAGCGGCTCCAGCGCCTTCAAGCT Rv3681c_nonpal_1 10_up_of_Rv1866 5 24 + -2.96203 0.00797 0.456 CGGCTGTTCTGCTGGAGGCA Rv3488_nonpal_2 antisense_frdA_787_from_start 12 39 + -37.4043 0.00797 0.309 TAATCCTGGAGGTAGCGGTAGCCGTCTT Rv0023_nonpal_1 antisense_rocA_790_to_stop 1 21 + 2.15493 0.00798 0.167 GATAGCTATGGTAGCGGCCGA Rv2034_nonpal_1 sense_pks6_423_from_start 7 17 + 2.98529 0.00798 0.359 GCGATAACAGC Rv2034_nonpal_1 sense_pks6_424_from_start 7 17 + 2.98529 0.00798 0.359 GCGATAACAGC Rv2506_nonpal_1 1662_up_of_Rv2018 22 40 + -6.70213 0.00798 0.621 TGAAATTGATACAAGATCG Rv0678_nonpal_1 antisense_Rv1461_472_from_start 15 29 - 2.82812 0.00799 0.321 AGAGGATCTGGAGGC Rv0678_nonpal_1 sense_Rv1461_475_from_start 9 23 + 2.82812 0.00799 0.321 AGAGGATCTGGAGGC Rv1033c_nonpal_1 sense_Rv0674_10_to_stop 19 33 - -5.26582 0.00799 0.66 CACTCATGTCACCTC Rv0324_pal_1 sense_pks9_325_to_stop 9 20 + -2.5679 0.00799 1 CAATCGTCTCCA Rv0324_pal_1 sense_pks9_325_to_stop 9 20 - -2.5679 0.00799 1 TGGAGACGATTG Rv0081_nonpal_1 sense_fadE7_118_to_stop 10 24 + -2.8 0.00799 0.469 GATATCGCTGGAGTA Rv0081_nonpal_1 antisense_fadE7_121_to_stop 14 28 - -2.8 0.00799 0.469 GATATCGCTGGAGTA Rv0494_nonpal_2 sense_bioB_253_to_stop 19 33 - -10.2105 0.00799 1 GACCGGCATTACCTC Rv3066_pal_1 sense_pks9_325_to_stop 5 18 + 0.261364 0.008 1 TACGCAATCGTCTC Rv3066_pal_1 sense_pks9_325_to_stop 5 18 - 0.261364 0.008 1 GAGACGATTGCGTA Rv0195_nonpal_1 sense_Rv1461_475_from_start 1 14 + -3.75532 0.00801 1 CAGATCAGAGAGGA Rv0195_nonpal_1 antisense_Rv1461_472_from_start 24 37 - -3.75532 0.00801 1 CAGATCAGAGAGGA Rv2009_nonpal_1 sense_accA1_598_from_start 15 35 + -3.11392 0.00801 0.279 TCCTGGAGCGGTTTGTGTTGC Rv2009_nonpal_1 antisense_accA1_595_from_start 3 23 - -3.11392 0.00801 0.279 TCCTGGAGCGGTTTGTGTTGC Rv2324_nonpal_2 sense_Rv1278_1158_to_stop 10 24 - -2.10843 0.00802 0.669 CCTCTCCAGCCGCCA Rv0275c_nonpal_1 antisense_Rv2279_293_to_stop 2 27 + -16.6346 0.00802 0.26 TGAACCGGATCGATGTGTACTGAGAT Rv2887_pal_1 antisense_PPE24_1570_to_stop 13 27 + -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2887_pal_1 antisense_PPE24_1345_to_stop 13 27 + -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2887_pal_1 antisense_PPE24_1270_to_stop 13 27 + -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2887_pal_1 sense_PPE24_1577_to_stop 21 35 - -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2887_pal_1 sense_PPE24_1352_to_stop 21 35 - -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2887_pal_1 sense_PPE24_1277_to_stop 21 35 - -0.425 0.00802 0.382 GCCACCGATTGTGAT Rv2989_nonpal_2 sense_mmpL4_1184_to_stop 4 18 - -5.63218 0.00802 1 AGAAATCATCAAAAT Rv2989_nonpal_2 antisense_mmpL4_1187_to_stop 20 34 + -5.63218 0.00802 1 AGAAATCATCAAAAT Rv0273c_pal_1 antisense_gca_467_from_start 9 24 + -0.9125 0.00802 0.471 GTAAGACTTGTGATAT Rv0273c_pal_1 sense_gca_460_from_start 24 39 + -0.9125 0.00802 0.471 ATATCACAAGTCTTAC Rv0273c_pal_1 antisense_gca_467_from_start 9 24 - -0.9125 0.00802 0.471 ATATCACAAGTCTTAC Rv0273c_pal_1 sense_gca_460_from_start 24 39 - -0.9125 0.00802 0.471 GTAAGACTTGTGATAT Rv0767c_nonpal_1 3360_up_of_Rv3179 16 30 + 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 4999_down_of_Rv3180c 16 30 + 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 8506_up_of_Rv3186 16 30 + 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 13078_down_of_Rv3190c 16 30 + 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 10041_up_of_Rv3188 16 30 + 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 10034_up_of_Rv3188 18 32 - 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 3353_up_of_Rv3179 18 32 - 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 8499_up_of_Rv3186 18 32 - 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 4992_down_of_Rv3180c 18 32 - 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0767c_nonpal_1 13071_down_of_Rv3190c 18 32 - 1.91429 0.00802 0.445 AAGTACACCAATCGG Rv0047c_nonpal_1 10_up_of_Rv1866 12 26 - 1.57812 0.00802 0.562 GGTGCCTCCAGCAGA Rv0757_nonpal_1 antisense_frdA_787_from_start 1 21 - -2.49367 0.00803 0.595 TCCAGGATTACGACCTCGGCA Rv3676_pal_1 1662_up_of_Rv2018 2 17 + -6.07619 0.00803 0.626 TATGAATCGGCCTTCT Rv3676_pal_1 1662_up_of_Rv2018 2 17 - -6.07619 0.00803 0.626 AGAAGGCCGATTCATA Rv2034_nonpal_1 5188_up_of_Rv3186 11 21 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 9760_down_of_Rv3190c 11 21 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 1681_down_of_Rv3180c 11 21 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 6723_up_of_Rv3188 11 21 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 42_up_of_Rv3179 11 21 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 5182_up_of_Rv3186 17 27 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 9754_down_of_Rv3190c 17 27 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 36_up_of_Rv3179 17 27 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 6717_up_of_Rv3188 17 27 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 1675_down_of_Rv3180c 17 27 + 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 1682_down_of_Rv3180c 21 31 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 9761_down_of_Rv3190c 21 31 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 43_up_of_Rv3179 21 31 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 6724_up_of_Rv3188 21 31 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 5189_up_of_Rv3186 21 31 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 1688_down_of_Rv3180c 27 37 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 49_up_of_Rv3179 27 37 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 9767_down_of_Rv3190c 27 37 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 6730_up_of_Rv3188 27 37 - 2.97059 0.00803 0.359 TTGTATACTGA Rv2034_nonpal_1 5195_up_of_Rv3186 27 37 - 2.97059 0.00803 0.359 TTGTATACTGA Rv1674c_nonpal_1 10_up_of_Rv1866 4 21 - -10.9574 0.00803 0.385 CTCCAGCAGAACAGCCGT Rv2506_pal_1 1662_up_of_Rv2018 3 18 + -2.88421 0.00803 0.377 ATGAATCGGCCTTCTC Rv2506_pal_1 1662_up_of_Rv2018 3 18 - -2.88421 0.00803 0.377 GAGAAGGCCGATTCAT Rv3849_nonpal_1 antisense_PPE34_1661_from_start 28 39 - -3.9726 0.00804 0.735 CATTTTTCCCCG Rv3133c_nonpal_1 sense_pyrC_548_to_stop 16 30 + 2.46377 0.00804 0.553 GGGTATTTCGATCAC Rv3133c_nonpal_1 antisense_pyrC_541_to_stop 18 32 - 2.46377 0.00804 0.553 GGGTATTTCGATCAC Rv1473A_pal_2 sense_Rv2279_300_to_stop 18 25 + -3.0411 0.00805 0.315 GGGATCTC Rv1473A_pal_2 antisense_Rv2279_293_to_stop 23 30 + -3.0411 0.00805 0.315 GAGATCCC Rv1473A_pal_2 sense_Rv2279_300_to_stop 18 25 - -3.0411 0.00805 0.315 GAGATCCC Rv1473A_pal_2 antisense_Rv2279_293_to_stop 23 30 - -3.0411 0.00805 0.315 GGGATCTC Rv1990c_pal_1 10_up_of_Rv1866 21 35 + 3.23529 0.00805 1 GGCACCGATATGGTG Rv1990c_pal_1 10_up_of_Rv1866 21 35 - 3.23529 0.00805 1 CACCATATCGGTGCC Rv1359_nonpal_1 1662_up_of_Rv2018 5 32 - -16.2692 0.00805 0.373 TATCAATTTCACTGGAGAAGGCCGATTC Rv3681c_pal_1 6730_up_of_Rv3188 5 18 + 1.85714 0.00805 0.46 GTGTCGGTTATAAG Rv3681c_pal_1 5195_up_of_Rv3186 5 18 + 1.85714 0.00805 0.46 GTGTCGGTTATAAG Rv3681c_pal_1 49_up_of_Rv3179 5 18 + 1.85714 0.00805 0.46 GTGTCGGTTATAAG Rv3681c_pal_1 1688_down_of_Rv3180c 5 18 + 1.85714 0.00805 0.46 GTGTCGGTTATAAG Rv3681c_pal_1 9767_down_of_Rv3190c 5 18 + 1.85714 0.00805 0.46 GTGTCGGTTATAAG Rv3681c_pal_1 6730_up_of_Rv3188 5 18 - 1.85714 0.00805 0.46 CTTATAACCGACAC Rv3681c_pal_1 5195_up_of_Rv3186 5 18 - 1.85714 0.00805 0.46 CTTATAACCGACAC Rv3681c_pal_1 49_up_of_Rv3179 5 18 - 1.85714 0.00805 0.46 CTTATAACCGACAC Rv3681c_pal_1 9767_down_of_Rv3190c 5 18 - 1.85714 0.00805 0.46 CTTATAACCGACAC Rv3681c_pal_1 1688_down_of_Rv3180c 5 18 - 1.85714 0.00805 0.46 CTTATAACCGACAC Rv0981_nonpal_2 7_up_of_Rv1049 13 33 + -6.03158 0.00805 0.491 ATTACTCCAGACTCGTGTAGC Rv0981_nonpal_2 4_up_of_Rv1049 5 25 - -6.03158 0.00805 0.491 ATTACTCCAGACTCGTGTAGC Rv1219c_nonpal_1 antisense_Rv1251c_1309_from_start 9 23 + -1.96203 0.00805 0.599 ACAGCGGCTCCAGCG Rv1219c_nonpal_1 7_up_of_Rv1049 26 40 - -1.96203 0.00805 0.599 ACGTGTAGCTACACG Rv2887_pal_1 sense_PPE24_1352_to_stop 21 35 + -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv2887_pal_1 sense_PPE24_1277_to_stop 21 35 + -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv2887_pal_1 sense_PPE24_1577_to_stop 21 35 + -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv2887_pal_1 antisense_PPE24_1570_to_stop 13 27 - -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv2887_pal_1 antisense_PPE24_1345_to_stop 13 27 - -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv2887_pal_1 antisense_PPE24_1270_to_stop 13 27 - -0.4375 0.00805 0.382 ATCACAATCGGTGGC Rv1473A_nonpal_1 sense_metA_384_from_start 5 18 + -8.45205 0.00805 0.449 TCAAGATTTCCGCT Rv2250c_nonpal_1 sense_Rv2963_537_to_stop 20 29 + 1.23188 0.00806 0.484 ACCCGAATCG Rv2250c_nonpal_1 antisense_Rv2963_530_to_stop 19 28 - 1.23188 0.00806 0.484 ACCCGAATCG Rv2324_nonpal_2 sense_Rv0674_10_to_stop 20 34 - -2.13253 0.00806 0.669 TCACTCATGTCACCT Rv1816_nonpal_2 antisense_treY_785_to_stop 5 32 - -46.8462 0.00806 0.756 GAGTGGGGGGCCTCCAGCCCGTTTCAGT Rv1816_nonpal_2 880_up_of_treZ 5 32 - -46.8462 0.00806 0.756 GAGTGGGGGGCCTCCAGCCCGTTTCAGT Rv1816_nonpal_2 antisense_treZ_470_to_stop 5 32 - -46.8462 0.00806 0.756 GAGTGGGGGGCCTCCAGCCCGTTTCAGT Rv1816_nonpal_2 sense_treZ_467_to_stop 6 33 + -46.8462 0.00806 0.756 GAGTGGGGGGCCTCCAGCCCGTTTCAGT Rv1816_nonpal_2 877_up_of_treZ 6 33 + -46.8462 0.00806 0.756 GAGTGGGGGGCCTCCAGCCCGTTTCAGT Rv2009_nonpal_1 sense_treZ_467_to_stop 15 35 + -3.13924 0.00806 0.279 GCCTCCAGCCCGTTTCAGTTC Rv2009_nonpal_1 877_up_of_treZ 15 35 + -3.13924 0.00806 0.279 GCCTCCAGCCCGTTTCAGTTC Rv2009_nonpal_1 antisense_treY_785_to_stop 3 23 - -3.13924 0.00806 0.279 GCCTCCAGCCCGTTTCAGTTC Rv2009_nonpal_1 antisense_treZ_470_to_stop 3 23 - -3.13924 0.00806 0.279 GCCTCCAGCCCGTTTCAGTTC Rv2009_nonpal_1 880_up_of_treZ 3 23 - -3.13924 0.00806 0.279 GCCTCCAGCCCGTTTCAGTTC Rv3676_pal_1 antisense_frdA_787_from_start 4 19 + -6.09524 0.00807 0.626 CGAGGTCGTAATCCTG Rv3676_pal_1 antisense_frdA_787_from_start 4 19 - -6.09524 0.00807 0.626 CAGGATTACGACCTCG Rv1473A_nonpal_2 antisense_pyrC_541_to_stop 19 26 - -5.41096 0.00807 0.415 TTCGATCA Rv1473A_nonpal_2 sense_pyrC_548_to_stop 22 29 + -5.41096 0.00807 0.415 TTCGATCA Rv1816_nonpal_1 antisense_Rv1461_472_from_start 22 38 + 1.6 0.00807 0.353 GATCCTCTCTGATCTGG Rv0494_nonpal_2 sense_Rv1278_1158_to_stop 22 36 + -10.2632 0.00808 1 AGGTCGCTGACCTAG Rv2011c_pal_1 1662_up_of_Rv2018 19 33 + 3.09722 0.00808 0.849 CAGTGAAATTGATAC Rv2011c_pal_1 1662_up_of_Rv2018 19 33 - 3.09722 0.00808 0.849 GTATCAATTTCACTG Rv0022c_nonpal_1 1662_up_of_Rv2018 18 32 + -0.410959 0.00808 0.257 CCAGTGAAATTGATA Rv0967_nonpal_2 antisense_PPE34_1661_from_start 2 22 + -20.1596 0.00808 1 CACTGTCACGTAATCTGGAGG Rv0967_nonpal_2 sense_PE_PGRS57_112_from_start 1 21 - -20.1596 0.00808 1 CTGCGTGGTCGCACTGGCTGC Rv0967_nonpal_2 sense_PE_PGRS54_112_from_start 1 21 - -20.1596 0.00808 1 CTGCGTGGTCGCACTGGCTGC Rv0967_nonpal_2 sense_PPE34_3066_to_stop 16 36 - -20.1596 0.00808 1 CACTGTCACGTAATCTGGAGG Rv0967_nonpal_2 sense_PPE34_1664_from_start 16 36 - -20.1596 0.00808 1 CACTGTCACGTAATCTGGAGG Rv0967_nonpal_2 sense_PPE34_1439_from_start 16 36 - -20.1596 0.00808 1 CACTGTCACGTAATCTGGAGG Rv2506_nonpal_1 antisense_rocA_790_to_stop 7 25 - -6.75532 0.00808 0.621 AATATCGGCCGCTACCATA Rv0195_nonpal_1 antisense_Rv3282_217_to_stop 26 39 - -3.79787 0.00808 1 CACCTTCGGCCTCC Rv0195_nonpal_1 447_down_of_accE5 26 39 - -3.79787 0.00808 1 CACCTTCGGCCTCC Rv3849_nonpal_1 antisense_gca_467_from_start 19 30 + -4 0.00808 0.735 TGATATTGATAC Rv3849_nonpal_1 sense_gca_460_from_start 18 29 - -4 0.00808 0.735 TGATATTGATAC Rv0023_nonpal_2 sense_mmpL4_1184_to_stop 2 29 + -41.9038 0.00808 0.442 GGATTTTGATGATTTCTGGAGACCAATT Rv0023_nonpal_2 antisense_mmpL4_1187_to_stop 9 36 - -41.9038 0.00808 0.442 GGATTTTGATGATTTCTGGAGACCAATT Rv1719_nonpal_1 antisense_Rv1461_559_from_start 22 38 + 0.671053 0.00808 1 TTACTGTACCGAAATAT Rv1719_nonpal_1 sense_Rv1461_552_from_start 10 26 - 0.671053 0.00808 1 TTACTGTACCGAAATAT Rv3066_pal_1 antisense_Rv0370c_389_from_start 26 39 + 0.227273 0.00809 1 CGGTCCGCGGTGCC Rv3066_pal_1 antisense_Rv0370c_389_from_start 26 39 - 0.227273 0.00809 1 GGCACCGCGGACCG Rv1674c_pal_1 antisense_Rv2279_293_to_stop 8 29 + -1.71875 0.00809 0.161 GGATCGATGTGTACTGAGATCC Rv1674c_pal_1 sense_Rv2279_300_to_stop 19 40 + -1.71875 0.00809 0.161 GGATCTCAGTACACATCGATCC Rv1674c_pal_1 antisense_Rv2279_293_to_stop 8 29 - -1.71875 0.00809 0.161 GGATCTCAGTACACATCGATCC Rv1674c_pal_1 sense_Rv2279_300_to_stop 19 40 - -1.71875 0.00809 0.161 GGATCGATGTGTACTGAGATCC Rv2788_pal_2 antisense_fadE7_121_to_stop 5 25 + -4.82292 0.00809 0.723 ATGACCGGGTACTCCAGCGAT Rv2788_pal_2 sense_fadE7_118_to_stop 13 33 + -4.82292 0.00809 0.723 ATCGCTGGAGTACCCGGTCAT Rv2788_pal_2 antisense_fadE7_121_to_stop 5 25 - -4.82292 0.00809 0.723 ATCGCTGGAGTACCCGGTCAT Rv2788_pal_2 sense_fadE7_118_to_stop 13 33 - -4.82292 0.00809 0.723 ATGACCGGGTACTCCAGCGAT Rv3849_pal_1 antisense_frdA_787_from_start 29 36 + 3.4026 0.0081 1 GTAGCCGT Rv3849_pal_1 antisense_frdA_787_from_start 29 36 - 3.4026 0.0081 1 ACGGCTAC Rv3574_pal_1 sense_pks9_325_to_stop 1 16 + 1.02899 0.0081 0.289 GAACTACGCAATCGTC Rv3574_pal_1 sense_pks9_325_to_stop 1 16 - 1.02899 0.0081 0.289 GACGATTGCGTAGTTC Rv0678_nonpal_1 sense_Rv2279_300_to_stop 19 33 - 2.79688 0.0081 0.321 TGTGTACTGAGATCC Rv0678_nonpal_1 antisense_Rv2279_293_to_stop 15 29 + 2.79688 0.0081 0.321 TGTGTACTGAGATCC Rv0275c_nonpal_1 antisense_aldA_642_from_start 13 38 + -16.6923 0.0081 0.26 ACTGCTGGAGGTGACGATGTTGACAA Rv0195_nonpal_1 880_up_of_treZ 27 40 + -3.80851 0.00811 1 CCACTCTTCGCCCA Rv0195_nonpal_1 antisense_treZ_470_to_stop 27 40 + -3.80851 0.00811 1 CCACTCTTCGCCCA Rv0195_nonpal_1 antisense_treY_785_to_stop 27 40 + -3.80851 0.00811 1 CCACTCTTCGCCCA Rv2788_nonpal_2 49_up_of_Rv3179 6 33 + -26.2674 0.00811 0.546 TGTCGGTTATAAGTACACCGATCAGTAT Rv2788_nonpal_2 6730_up_of_Rv3188 6 33 + -26.2674 0.00811 0.546 TGTCGGTTATAAGTACACCGATCAGTAT Rv2788_nonpal_2 5195_up_of_Rv3186 6 33 + -26.2674 0.00811 0.546 TGTCGGTTATAAGTACACCGATCAGTAT Rv2788_nonpal_2 9767_down_of_Rv3190c 6 33 + -26.2674 0.00811 0.546 TGTCGGTTATAAGTACACCGATCAGTAT Rv2788_nonpal_2 1688_down_of_Rv3180c 6 33 + -26.2674 0.00811 0.546 TGTCGGTTATAAGTACACCGATCAGTAT Rv1049_nonpal_2 antisense_aldA_642_from_start 14 28 - -1.22667 0.00811 0.657 CGTCACCTCCAGCAG Rv0472c_nonpal_1 antisense_PPE24_1570_to_stop 12 22 - -5.97115 0.00812 0.266 AATCGGTGGCT Rv0472c_nonpal_1 antisense_PPE24_1345_to_stop 12 22 - -5.97115 0.00812 0.266 AATCGGTGGCT Rv0472c_nonpal_1 antisense_PPE24_1270_to_stop 12 22 - -5.97115 0.00812 0.266 AATCGGTGGCT Rv0472c_nonpal_1 sense_PPE24_1577_to_stop 26 36 + -5.97115 0.00812 0.266 AATCGGTGGCT Rv0472c_nonpal_1 sense_PPE24_1352_to_stop 26 36 + -5.97115 0.00812 0.266 AATCGGTGGCT Rv0472c_nonpal_1 sense_PPE24_1277_to_stop 26 36 + -5.97115 0.00812 0.266 AATCGGTGGCT Rv0081_nonpal_1 antisense_Rv2963_530_to_stop 1 15 + -2.86667 0.00812 0.47 AAAGAAGCTCTGCCA Rv0023_nonpal_1 sense_Rv2038c_183_from_start 19 39 - 2.11268 0.00812 0.167 CGCGCTCGCCGATCCGGATAC Rv0302_pal_1 sense_Rv1278_1158_to_stop 15 26 + 3.28676 0.00813 0.422 GCTGGAGAGGTC Rv0302_pal_1 sense_Rv1278_1158_to_stop 15 26 - 3.28676 0.00813 0.422 GACCTCTCCAGC Rv3830c_pal_2 10_up_of_Rv1866 32 40 + 1.87013 0.00813 1 GGTGACACG Rv3830c_pal_2 10_up_of_Rv1866 32 40 - 1.87013 0.00813 1 CGTGTCACC Rv0880_nonpal_1 sense_mmpL4_1184_to_stop 4 27 + -11.1158 0.00813 0.197 ATTTTGATGATTTCTGGAGACCAA Rv0880_nonpal_1 antisense_mmpL4_1187_to_stop 11 34 - -11.1158 0.00813 0.197 ATTTTGATGATTTCTGGAGACCAA Rv0691c_pal_2 antisense_Rv1461_472_from_start 2 10 + -3.72152 0.00814 0.606 TATGACTCC Rv0691c_pal_2 antisense_Rv1461_472_from_start 2 10 - -3.72152 0.00814 0.606 GGAGTCATA Rv0691c_pal_2 sense_Rv1461_475_from_start 28 36 + -3.72152 0.00814 0.606 GGAGTCATA Rv0691c_pal_2 sense_Rv1461_475_from_start 28 36 - -3.72152 0.00814 0.606 TATGACTCC Rv0678_pal_2 antisense_frdA_787_from_start 6 21 + -0.253333 0.00814 0.346 AGGTCGTAATCCTGGA Rv0678_pal_2 antisense_frdA_787_from_start 6 21 - -0.253333 0.00814 0.346 TCCAGGATTACGACCT Rv1255c_nonpal_1 sense_Rv1461_552_from_start 9 28 + -5.77011 0.00815 0.465 AATATTTCGGTACAGTAATC Rv1255c_nonpal_1 antisense_Rv1461_559_from_start 20 39 - -5.77011 0.00815 0.465 AATATTTCGGTACAGTAATC Rv0324_nonpal_1 sense_bioB_253_to_stop 26 33 + -3.79412 0.00815 0.458 TGCCGGTC Rv3681c_nonpal_1 antisense_gca_467_from_start 4 23 + -3.05063 0.00815 0.456 ATGCCGTAAGACTTGTGATA Rv1956_nonpal_1 antisense_PPE34_1661_from_start 8 28 + -3.06977 0.00816 0.308 CACGTAATCTGGAGGGAATCC Rv1956_nonpal_1 sense_PPE34_3066_to_stop 10 30 - -3.06977 0.00816 0.308 CACGTAATCTGGAGGGAATCC Rv1956_nonpal_1 sense_PPE34_1664_from_start 10 30 - -3.06977 0.00816 0.308 CACGTAATCTGGAGGGAATCC Rv1956_nonpal_1 sense_PPE34_1439_from_start 10 30 - -3.06977 0.00816 0.308 CACGTAATCTGGAGGGAATCC Rv3246c_nonpal_1 sense_gca_460_from_start 9 28 + -1.5679 0.00816 0.355 CATGCTGGCGTATCAATATC Rv3246c_nonpal_1 antisense_gca_467_from_start 20 39 - -1.5679 0.00816 0.355 CATGCTGGCGTATCAATATC Rv0465c_nonpal_2 sense_metA_384_from_start 6 33 - -12.1149 0.00817 1 TCACGTATCGAGATCAGCGGAAATCTTG Rv0023_nonpal_1 sense_Rv2279_300_to_stop 18 38 + 2.09859 0.00817 0.167 GGGATCTCAGTACACATCGAT Rv0023_nonpal_1 antisense_Rv2279_293_to_stop 10 30 - 2.09859 0.00817 0.167 GGGATCTCAGTACACATCGAT Rv0195_nonpal_1 antisense_metA_391_from_start 24 37 + -3.84043 0.00817 1 GAGATCAGCGGAAA Rv0195_nonpal_1 sense_metA_384_from_start 11 24 - -3.84043 0.00817 1 GAGATCAGCGGAAA Rv0767c_pal_1 4_up_of_Rv1049 6 17 + 3.38614 0.00817 0.989 CTACACGAGTCT Rv0767c_pal_1 4_up_of_Rv1049 6 17 - 3.38614 0.00817 0.989 AGACTCGTGTAG Rv0767c_pal_1 7_up_of_Rv1049 21 32 + 3.38614 0.00817 0.989 AGACTCGTGTAG Rv0767c_pal_1 sense_pks9_325_to_stop 24 35 + 3.38614 0.00817 0.989 GGCTATCGGTTT Rv0767c_pal_1 7_up_of_Rv1049 21 32 - 3.38614 0.00817 0.989 CTACACGAGTCT Rv0767c_pal_1 sense_pks9_325_to_stop 24 35 - 3.38614 0.00817 0.989 AAACCGATAGCC Rv0302_pal_1 sense_Rv1461_552_from_start 9 20 + 3.27206 0.00818 0.422 AATATTTCGGTA Rv0302_pal_1 sense_Rv1461_552_from_start 9 20 - 3.27206 0.00818 0.422 TACCGAAATATT Rv0302_pal_1 antisense_Rv1461_559_from_start 28 39 + 3.27206 0.00818 0.422 TACCGAAATATT Rv0302_pal_1 antisense_Rv1461_559_from_start 28 39 - 3.27206 0.00818 0.422 AATATTTCGGTA Rv0022c_nonpal_1 sense_mmpL4_1184_to_stop 6 20 - -0.465753 0.00818 0.257 CCAGAAATCATCAAA Rv0022c_nonpal_1 antisense_mmpL4_1187_to_stop 18 32 + -0.465753 0.00818 0.257 CCAGAAATCATCAAA Rv3849_nonpal_1 447_down_of_accE5 7 18 - -4.05479 0.00818 0.735 AGGCTTACCTGG Rv3849_nonpal_1 antisense_Rv3282_217_to_stop 7 18 - -4.05479 0.00818 0.735 AGGCTTACCTGG Rv1219c_nonpal_1 sense_Rv1278_1158_to_stop 26 40 - -2.02532 0.00818 0.599 GCGGCTAGGTCAGCG Rv0135c_pal_1 sense_pks6_424_from_start 15 24 + 0.75 0.00819 0.301 AGCGTATCCA Rv0135c_pal_1 sense_pks6_423_from_start 15 24 + 0.75 0.00819 0.301 AGCGTATCCA Rv0135c_pal_1 antisense_pks6_431_from_start 24 33 + 0.75 0.00819 0.301 TGGATACGCT Rv0135c_pal_1 antisense_pks6_430_from_start 24 33 + 0.75 0.00819 0.301 TGGATACGCT Rv0135c_pal_1 sense_pks6_423_from_start 15 24 - 0.75 0.00819 0.301 TGGATACGCT Rv0135c_pal_1 sense_pks6_424_from_start 15 24 - 0.75 0.00819 0.301 TGGATACGCT Rv0135c_pal_1 antisense_pks6_431_from_start 24 33 - 0.75 0.00819 0.301 AGCGTATCCA Rv0135c_pal_1 antisense_pks6_430_from_start 24 33 - 0.75 0.00819 0.301 AGCGTATCCA Rv0047c_nonpal_1 93_up_of_lpqG 12 26 + 1.51562 0.00819 0.562 GGCCCGTCGATGCCA Rv0047c_nonpal_1 sense_Rv2279_300_to_stop 6 20 - 1.51562 0.00819 0.562 CCCCTATCCGTATGG Rv3246c_nonpal_1 antisense_PPE34_1661_from_start 8 27 + -1.58025 0.00819 0.355 CACGTAATCTGGAGGGAATC Rv3246c_nonpal_1 sense_PPE34_3066_to_stop 11 30 - -1.58025 0.00819 0.355 CACGTAATCTGGAGGGAATC Rv3246c_nonpal_1 sense_PPE34_1664_from_start 11 30 - -1.58025 0.00819 0.355 CACGTAATCTGGAGGGAATC Rv3246c_nonpal_1 sense_PPE34_1439_from_start 11 30 - -1.58025 0.00819 0.355 CACGTAATCTGGAGGGAATC Rv2642_nonpal_1 antisense_frdA_787_from_start 11 35 + -6.72093 0.00819 0.258 GTAATCCTGGAGGTAGCGGTAGCCG Rv0339c_nonpal_2 sense_pyrC_548_to_stop 16 36 + -15.125 0.00819 0.742 GGGTATTTCGATCACCGCCGA Rv0339c_nonpal_2 antisense_pyrC_541_to_stop 12 32 - -15.125 0.00819 0.742 GGGTATTTCGATCACCGCCGA Rv1556_nonpal_1 sense_Rv2963_537_to_stop 17 33 - -9.10638 0.0082 0.717 AGAACGATTCGGGTACC Rv1556_nonpal_1 antisense_Rv2963_530_to_stop 15 31 + -9.10638 0.0082 0.717 AGAACGATTCGGGTACC Rv0678_pal_1 93_up_of_lpqG 15 21 + -3.25 0.0082 0.574 CCGTCGA Rv0678_pal_1 93_up_of_lpqG 15 21 - -3.25 0.0082 0.574 TCGACGG Rv0135c_nonpal_2 antisense_pyrC_541_to_stop 2 29 - -27.9681 0.0082 0.464 TATTTCGATCACCGCCGAGGTCACCCCC Rv0967_nonpal_1 sense_fadE7_118_to_stop 3 23 + 3.03279 0.0082 1 GCAACGGGATATCGCTGGAGT Rv0967_nonpal_1 antisense_fadE7_121_to_stop 15 35 - 3.03279 0.0082 1 GCAACGGGATATCGCTGGAGT Rv1776c_nonpal_1 antisense_pyrC_541_to_stop 5 10 - 1.08219 0.0082 0.802 GTCACC Rv1776c_nonpal_1 sense_Rv0674_10_to_stop 21 26 - 1.08219 0.0082 0.802 GTCACC Rv1776c_nonpal_1 antisense_aldA_642_from_start 22 27 - 1.08219 0.0082 0.802 GTCACC Rv1776c_nonpal_1 10_up_of_Rv1866 32 37 - 1.08219 0.0082 0.802 GTCACC Rv1776c_nonpal_1 sense_bioB_253_to_stop 34 39 - 1.08219 0.0082 0.802 GTCACC Rv1404_nonpal_1 1662_up_of_Rv2018 8 33 + -1.775 0.0082 0.106 TCGGCCTTCTCCAGTGAAATTGATAC Rv1404_nonpal_1 sense_Rv0674_10_to_stop 10 35 + -1.775 0.0082 0.106 CAACTCCTGGAGGTGACATGAGTGAT Rv0047c_pal_1 sense_Rv1278_1158_to_stop 28 39 + 3.10606 0.0082 0.409 CTGACCTAGCCG Rv0047c_pal_1 sense_Rv1278_1158_to_stop 28 39 - 3.10606 0.0082 0.409 CGGCTAGGTCAG Rv0678_nonpal_1 antisense_Rv2279_293_to_stop 15 29 - 2.76562 0.00821 0.321 GGATCTCAGTACACA Rv0678_nonpal_1 sense_Rv2279_300_to_stop 19 33 + 2.76562 0.00821 0.321 GGATCTCAGTACACA Rv3736_nonpal_1 antisense_gca_467_from_start 8 22 + 2.13043 0.00821 0.626 CGTAAGACTTGTGAT Rv3736_nonpal_1 sense_gca_460_from_start 26 40 - 2.13043 0.00821 0.626 CGTAAGACTTGTGAT Rv0022c_nonpal_1 antisense_rocA_790_to_stop 19 33 - -0.479452 0.00821 0.257 TGGGTACCAATATCG Rv0022c_nonpal_1 sense_rocA_797_to_stop 15 29 + -0.479452 0.00821 0.257 TGGGTACCAATATCG Rv1994c_pal_1 sense_pks9_325_to_stop 6 20 + 1.64865 0.00822 0.188 ACGCAATCGTCTCCA Rv1994c_pal_1 sense_pks9_325_to_stop 6 20 - 1.64865 0.00822 0.188 TGGAGACGATTGCGT Rv0653c_pal_1 antisense_rocA_790_to_stop 12 35 + -0.101266 0.00822 0.191 TAGCGGCCGATATTGGTACCCACC Rv0653c_pal_1 sense_rocA_797_to_stop 13 36 + -0.101266 0.00822 0.191 GGTGGGTACCAATATCGGCCGCTA Rv0653c_pal_1 antisense_rocA_790_to_stop 12 35 - -0.101266 0.00822 0.191 GGTGGGTACCAATATCGGCCGCTA Rv0653c_pal_1 sense_rocA_797_to_stop 13 36 - -0.101266 0.00822 0.191 TAGCGGCCGATATTGGTACCCACC Rv2011c_nonpal_1 antisense_gca_467_from_start 2 20 - 2.62857 0.00822 0.797 CACAAGTCTTACGGCATGC Rv1674c_nonpal_1 10_up_of_Rv1866 23 40 + -11.0745 0.00822 0.385 CACCGATATGGTGACACG Rv1990c_nonpal_1 6723_up_of_Rv3188 4 14 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 42_up_of_Rv3179 4 14 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 1681_down_of_Rv3180c 4 14 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 5188_up_of_Rv3186 4 14 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 9760_down_of_Rv3190c 4 14 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 9754_down_of_Rv3190c 10 20 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 5182_up_of_Rv3186 10 20 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 1675_down_of_Rv3180c 10 20 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 6717_up_of_Rv3188 10 20 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 36_up_of_Rv3179 10 20 + 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 43_up_of_Rv3179 28 38 - 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 6724_up_of_Rv3188 28 38 - 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 1682_down_of_Rv3180c 28 38 - 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 9761_down_of_Rv3190c 28 38 - 2.41538 0.00822 1 CGACTCCTTGT Rv1990c_nonpal_1 5189_up_of_Rv3186 28 38 - 2.41538 0.00822 1 CGACTCCTTGT Rv3124_nonpal_1 sense_gca_460_from_start 3 29 - -19.6346 0.00822 0.893 TGATATTGATACGCCAGCATGTCGGTG Rv1255c_nonpal_1 antisense_PPE24_1270_to_stop 19 38 + -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv1255c_nonpal_1 antisense_PPE24_1570_to_stop 19 38 + -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv1255c_nonpal_1 antisense_PPE24_1345_to_stop 19 38 + -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv1255c_nonpal_1 sense_PPE24_1577_to_stop 10 29 - -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv1255c_nonpal_1 sense_PPE24_1352_to_stop 10 29 - -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv1255c_nonpal_1 sense_PPE24_1277_to_stop 10 29 - -5.81609 0.00822 0.465 GATTGTGATACCCGCGGGTA Rv0767c_nonpal_1 antisense_metA_391_from_start 4 18 - 1.84286 0.00823 0.445 GTGACCAGGTGCAGG Rv0691c_pal_1 antisense_Rv2279_293_to_stop 2 13 + 1.23188 0.00823 0.248 TGAACCGGATCG Rv0691c_pal_1 antisense_Rv2279_293_to_stop 2 13 - 1.23188 0.00823 0.248 CGATCCGGTTCA Rv0081_pal_1 antisense_rocA_790_to_stop 9 24 + -0.493333 0.00823 0.443 TGGTAGCGGCCGATAT Rv0081_pal_1 sense_rocA_797_to_stop 24 39 + -0.493333 0.00823 0.443 ATATCGGCCGCTACCA Rv0081_pal_1 antisense_rocA_790_to_stop 9 24 - -0.493333 0.00823 0.443 ATATCGGCCGCTACCA Rv0081_pal_1 sense_rocA_797_to_stop 24 39 - -0.493333 0.00823 0.443 TGGTAGCGGCCGATAT Rv0678_nonpal_2 sense_Rv1461_552_from_start 4 28 + -48.1624 0.00825 1 CAAGGAATATTTCGGTACAGTAATC Rv0022c_nonpal_1 sense_metA_384_from_start 16 30 - -0.506849 0.00826 0.257 CGTATCGAGATCAGC Rv0022c_nonpal_1 antisense_metA_391_from_start 18 32 + -0.506849 0.00826 0.257 CGTATCGAGATCAGC Rv1846c_nonpal_1 antisense_PPE24_1345_to_stop 19 40 - -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv1846c_nonpal_1 antisense_PPE24_1270_to_stop 19 40 - -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv1846c_nonpal_1 antisense_PPE24_1570_to_stop 19 40 - -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv1846c_nonpal_1 sense_PPE24_1577_to_stop 8 29 + -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv1846c_nonpal_1 sense_PPE24_1352_to_stop 8 29 + -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv1846c_nonpal_1 sense_PPE24_1277_to_stop 8 29 + -17.5957 0.00827 0.407 GATACCCGCGGGTATCACAATC Rv3488_pal_2 antisense_PPE24_1345_to_stop 18 25 + -8.69767 0.00827 0.561 CGATTGTG Rv3488_pal_2 antisense_PPE24_1570_to_stop 18 25 + -8.69767 0.00827 0.561 CGATTGTG Rv3488_pal_2 antisense_PPE24_1270_to_stop 18 25 + -8.69767 0.00827 0.561 CGATTGTG Rv3488_pal_2 sense_PPE24_1577_to_stop 23 30 + -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 sense_PPE24_1352_to_stop 23 30 + -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 sense_PPE24_1277_to_stop 23 30 + -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 antisense_PPE24_1570_to_stop 18 25 - -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 antisense_PPE24_1345_to_stop 18 25 - -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 antisense_PPE24_1270_to_stop 18 25 - -8.69767 0.00827 0.561 CACAATCG Rv3488_pal_2 sense_PPE24_1577_to_stop 23 30 - -8.69767 0.00827 0.561 CGATTGTG Rv3488_pal_2 sense_PPE24_1352_to_stop 23 30 - -8.69767 0.00827 0.561 CGATTGTG Rv3488_pal_2 sense_PPE24_1277_to_stop 23 30 - -8.69767 0.00827 0.561 CGATTGTG Rv0465c_pal_2 antisense_aldA_642_from_start 31 38 + -1.4557 0.00827 0.957 GTTGACAA Rv0465c_pal_2 antisense_aldA_642_from_start 32 39 + -1.4557 0.00827 0.957 TTGACAAC Rv0465c_pal_2 antisense_aldA_642_from_start 31 38 - -1.4557 0.00827 0.957 TTGTCAAC Rv0465c_pal_2 antisense_aldA_642_from_start 32 39 - -1.4557 0.00827 0.957 GTTGTCAA Rv2324_nonpal_2 sense_bioB_253_to_stop 26 40 - -2.25301 0.00827 0.675 CGTCACCGACCGGCA Rv0767c_nonpal_1 antisense_PPE24_1570_to_stop 3 17 + 1.82857 0.00827 0.445 GTAGACTAAAGCCAC Rv0767c_nonpal_1 antisense_PPE24_1345_to_stop 3 17 + 1.82857 0.00827 0.445 GTAGACTAAAGCCAC Rv0767c_nonpal_1 antisense_PPE24_1270_to_stop 3 17 + 1.82857 0.00827 0.445 GTAGACTAAAGCCAC Rv3574_nonpal_1 antisense_fadE7_121_to_stop 3 17 - -3.17647 0.00828 0.335 AGTACCCGGTCATCC Rv3574_nonpal_1 sense_fadE7_118_to_stop 21 35 + -3.17647 0.00828 0.335 AGTACCCGGTCATCC Rv3574_nonpal_1 antisense_Rv3282_217_to_stop 13 27 - -3.17647 0.00828 0.335 CCGATCTGGAGGCTT Rv3574_nonpal_1 447_down_of_accE5 13 27 - -3.17647 0.00828 0.335 CCGATCTGGAGGCTT Rv1846c_pal_1 4_up_of_Rv1049 8 22 + -4.42105 0.00828 0.331 ACACGAGTCTGGAGT Rv1846c_pal_1 7_up_of_Rv1049 16 30 + -4.42105 0.00828 0.331 ACTCCAGACTCGTGT Rv1846c_pal_1 4_up_of_Rv1049 8 22 - -4.42105 0.00828 0.331 ACTCCAGACTCGTGT Rv1846c_pal_1 7_up_of_Rv1049 16 30 - -4.42105 0.00828 0.331 ACACGAGTCTGGAGT Rv0981_nonpal_1 37_up_of_Rv2172c 3 30 + -20.8585 0.00829 0.478 ACTCCGAGCCATGCTCCAGCGGTTGATT Rv0981_nonpal_1 sense_mptA_23_from_start 3 30 + -20.8585 0.00829 0.478 ACTCCGAGCCATGCTCCAGCGGTTGATT Rv0022c_nonpal_1 antisense_Rv2279_293_to_stop 1 15 + -0.520548 0.00829 0.257 CTGAACCGGATCGAT Rv2009_pal_1 877_up_of_treZ 3 31 + -1.13139 0.0083 0.142 GAAGAGTGGGGGGCCTCCAGCCCGTTTCA Rv2009_pal_1 sense_treZ_467_to_stop 3 31 + -1.13139 0.0083 0.142 GAAGAGTGGGGGGCCTCCAGCCCGTTTCA Rv2009_pal_1 antisense_treY_785_to_stop 7 35 + -1.13139 0.0083 0.142 TGAAACGGGCTGGAGGCCCCCCACTCTTC Rv2009_pal_1 880_up_of_treZ 7 35 + -1.13139 0.0083 0.142 TGAAACGGGCTGGAGGCCCCCCACTCTTC Rv2009_pal_1 antisense_treZ_470_to_stop 7 35 + -1.13139 0.0083 0.142 TGAAACGGGCTGGAGGCCCCCCACTCTTC Rv2009_pal_1 sense_treZ_467_to_stop 3 31 - -1.13139 0.0083 0.142 TGAAACGGGCTGGAGGCCCCCCACTCTTC Rv2009_pal_1 877_up_of_treZ 3 31 - -1.13139 0.0083 0.142 TGAAACGGGCTGGAGGCCCCCCACTCTTC Rv2009_pal_1 880_up_of_treZ 7 35 - -1.13139 0.0083 0.142 GAAGAGTGGGGGGCCTCCAGCCCGTTTCA Rv2009_pal_1 antisense_treZ_470_to_stop 7 35 - -1.13139 0.0083 0.142 GAAGAGTGGGGGGCCTCCAGCCCGTTTCA Rv2009_pal_1 antisense_treY_785_to_stop 7 35 - -1.13139 0.0083 0.142 GAAGAGTGGGGGGCCTCCAGCCCGTTTCA Rv2034_nonpal_1 13078_down_of_Rv3190c 2 12 - 2.86765 0.0083 0.359 GCTTTGACGGT Rv2034_nonpal_1 4999_down_of_Rv3180c 2 12 - 2.86765 0.0083 0.359 GCTTTGACGGT Rv2034_nonpal_1 8506_up_of_Rv3186 2 12 - 2.86765 0.0083 0.359 GCTTTGACGGT Rv2034_nonpal_1 10041_up_of_Rv3188 2 12 - 2.86765 0.0083 0.359 GCTTTGACGGT Rv2034_nonpal_1 3360_up_of_Rv3179 2 12 - 2.86765 0.0083 0.359 GCTTTGACGGT Rv1956_pal_1 1662_up_of_Rv2018 22 29 + -1.98837 0.00831 0.244 TGAAATTG Rv1956_pal_1 1662_up_of_Rv2018 22 29 - -1.98837 0.00831 0.244 CAATTTCA Rv2359_nonpal_1 93_up_of_lpqG 3 30 + -25.7308 0.00831 0.303 GCATTGTAGGGCCCGTCGATGCCAGTAC Rv0023_nonpal_2 antisense_Rv2963_530_to_stop 5 32 - -42.0962 0.00831 0.442 GGGTACCCGAATCGTTCTGGCAGAGCTT Rv3488_nonpal_2 sense_Rv2038c_183_from_start 3 30 - -37.6915 0.00831 0.315 CGATCCGGATACGCCCACAGTCCAGCGT Rv1828_nonpal_1 sense_metA_384_from_start 6 29 + -12.2128 0.00832 0.505 CAAGATTTCCGCTGATCTCGATAC Rv2250c_pal_1 sense_accA1_598_from_start 4 10 + -3.66176 0.00832 0.547 CGATACG Rv2250c_pal_1 sense_accA1_598_from_start 4 10 - -3.66176 0.00832 0.547 CGTATCG Rv2250c_pal_1 antisense_metA_391_from_start 18 24 + -3.66176 0.00832 0.547 CGTATCG Rv2250c_pal_1 antisense_metA_391_from_start 18 24 - -3.66176 0.00832 0.547 CGATACG Rv2250c_pal_1 sense_metA_384_from_start 24 30 + -3.66176 0.00832 0.547 CGATACG Rv2250c_pal_1 antisense_accA1_595_from_start 28 34 + -3.66176 0.00832 0.547 CGTATCG Rv2250c_pal_1 sense_metA_384_from_start 24 30 - -3.66176 0.00832 0.547 CGTATCG Rv2250c_pal_1 antisense_accA1_595_from_start 28 34 - -3.66176 0.00832 0.547 CGATACG Rv0047c_nonpal_2 antisense_aldA_642_from_start 3 30 - -42.3248 0.00832 0.353 ATCGTCACCTCCAGCAGTCACGCTTTGG Rv3066_nonpal_1 sense_Rv0674_10_to_stop 6 25 - -2.58621 0.00833 1 TCACCTCCAGGAGTTGAGTT Rv0757_nonpal_1 antisense_gca_467_from_start 5 25 - -2.65823 0.00833 0.595 AATATCACAAGTCTTACGGCA Rv1674c_pal_1 antisense_PPE34_1661_from_start 19 40 + -1.8125 0.00833 0.162 GAGGGAATCCGGGGAAAAATGG Rv1674c_pal_1 antisense_PPE34_1661_from_start 19 40 - -1.8125 0.00833 0.162 CCATTTTTCCCCGGATTCCCTC Rv1167c_nonpal_1 sense_Rv0674_10_to_stop 26 40 - -7.86538 0.00834 0.94 ACCAGATCACTCATG Rv3574_pal_1 9761_down_of_Rv3190c 3 18 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 1682_down_of_Rv3180c 3 18 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 43_up_of_Rv3179 3 18 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 6724_up_of_Rv3188 3 18 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 5189_up_of_Rv3186 3 18 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 1688_down_of_Rv3180c 9 24 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 9767_down_of_Rv3190c 9 24 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 49_up_of_Rv3179 9 24 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 6730_up_of_Rv3188 9 24 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 5195_up_of_Rv3186 9 24 + 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 1682_down_of_Rv3180c 3 18 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 9761_down_of_Rv3190c 3 18 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 43_up_of_Rv3179 3 18 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 6724_up_of_Rv3188 3 18 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 5189_up_of_Rv3186 3 18 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 9767_down_of_Rv3190c 9 24 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 1681_down_of_Rv3180c 24 39 + 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 49_up_of_Rv3179 9 24 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 9760_down_of_Rv3190c 24 39 + 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 42_up_of_Rv3179 24 39 + 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 6730_up_of_Rv3188 9 24 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 1688_down_of_Rv3180c 9 24 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 6723_up_of_Rv3188 24 39 + 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 5195_up_of_Rv3186 9 24 - 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 5188_up_of_Rv3186 24 39 + 0.942029 0.00834 0.289 GGTGTACTTATAACCG Rv3574_pal_1 9760_down_of_Rv3190c 24 39 - 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 6723_up_of_Rv3188 24 39 - 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 1681_down_of_Rv3180c 24 39 - 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 5188_up_of_Rv3186 24 39 - 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv3574_pal_1 42_up_of_Rv3179 24 39 - 0.942029 0.00834 0.289 CGGTTATAAGTACACC Rv1473A_nonpal_2 sense_pks9_325_to_stop 9 16 - -6.08219 0.00834 0.415 GACGATTG Rv1674c_nonpal_1 sense_pks9_325_to_stop 7 24 - -11.1489 0.00834 0.385 CATCTGGAGACGATTGCG Rv3246c_nonpal_1 antisense_pks6_430_from_start 12 31 + -1.65432 0.00835 0.355 GAACCCACGATCTGGATACG Rv3246c_nonpal_1 antisense_pks6_431_from_start 12 31 + -1.65432 0.00835 0.355 GAACCCACGATCTGGATACG Rv3246c_nonpal_1 sense_pks6_424_from_start 17 36 - -1.65432 0.00835 0.355 GAACCCACGATCTGGATACG Rv3246c_nonpal_1 sense_pks6_423_from_start 17 36 - -1.65432 0.00835 0.355 GAACCCACGATCTGGATACG Rv1956_nonpal_1 1662_up_of_Rv2018 13 33 + -3.16279 0.00835 0.311 CTTCTCCAGTGAAATTGATAC Rv0047c_nonpal_1 antisense_aldA_642_from_start 13 27 - 1.45312 0.00835 0.566 GTCACCTCCAGCAGT Rv0275c_nonpal_1 sense_Rv1461_552_from_start 3 28 - -16.8558 0.00836 0.265 GATTACTGTACCGAAATATTCCTTGA Rv1353c_nonpal_1 antisense_PPE24_1270_to_stop 20 34 + 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv1353c_nonpal_1 antisense_PPE24_1570_to_stop 20 34 + 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv1353c_nonpal_1 antisense_PPE24_1345_to_stop 20 34 + 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv1353c_nonpal_1 sense_PPE24_1577_to_stop 14 28 - 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv1353c_nonpal_1 sense_PPE24_1352_to_stop 14 28 - 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv1353c_nonpal_1 sense_PPE24_1277_to_stop 14 28 - 2.77273 0.00836 0.323 ATTGTGATACCCGCG Rv3557c_nonpal_1 sense_pks6_424_from_start 1 20 - -19.1058 0.00837 0.341 TACGCTGTTATCGCACACTT Rv3557c_nonpal_1 sense_pks6_423_from_start 1 20 - -19.1058 0.00837 0.341 TACGCTGTTATCGCACACTT Rv0081_pal_1 6730_up_of_Rv3188 2 17 + -0.546667 0.00837 0.443 ACAGTGTCGGTTATAA Rv0081_pal_1 5195_up_of_Rv3186 2 17 + -0.546667 0.00837 0.443 ACAGTGTCGGTTATAA Rv0081_pal_1 1688_down_of_Rv3180c 2 17 + -0.546667 0.00837 0.443 ACAGTGTCGGTTATAA Rv0081_pal_1 49_up_of_Rv3179 2 17 + -0.546667 0.00837 0.443 ACAGTGTCGGTTATAA Rv0081_pal_1 9767_down_of_Rv3190c 2 17 + -0.546667 0.00837 0.443 ACAGTGTCGGTTATAA Rv0081_pal_1 sense_metA_384_from_start 14 29 + -0.546667 0.00837 0.443 CCGCTGATCTCGATAC Rv0081_pal_1 6730_up_of_Rv3188 2 17 - -0.546667 0.00837 0.443 TTATAACCGACACTGT Rv0081_pal_1 5195_up_of_Rv3186 2 17 - -0.546667 0.00837 0.443 TTATAACCGACACTGT Rv0081_pal_1 1688_down_of_Rv3180c 2 17 - -0.546667 0.00837 0.443 TTATAACCGACACTGT Rv0081_pal_1 49_up_of_Rv3179 2 17 - -0.546667 0.00837 0.443 TTATAACCGACACTGT Rv0081_pal_1 9767_down_of_Rv3190c 2 17 - -0.546667 0.00837 0.443 TTATAACCGACACTGT Rv0081_pal_1 antisense_metA_391_from_start 19 34 + -0.546667 0.00837 0.443 GTATCGAGATCAGCGG Rv0081_pal_1 sense_metA_384_from_start 14 29 - -0.546667 0.00837 0.443 GTATCGAGATCAGCGG Rv0081_pal_1 antisense_metA_391_from_start 19 34 - -0.546667 0.00837 0.443 CCGCTGATCTCGATAC Rv1828_nonpal_1 sense_Rv2038c_183_from_start 7 30 + -12.2447 0.00837 0.505 TGGACTGTGGGCGTATCCGGATCG Rv3574_nonpal_1 antisense_cobK_311_from_start 17 31 + -3.23529 0.00837 0.335 GGTACCGGGATCCCA Rv3574_nonpal_1 sense_cobK_304_from_start 17 31 - -3.23529 0.00837 0.335 GGTACCGGGATCCCA Rv3676_nonpal_1 93_up_of_lpqG 7 27 + -15.5769 0.00838 1 TGTAGGGCCCGTCGATGCCAG Rv0602c_nonpal_1 sense_mptA_23_from_start 25 36 + -2.64384 0.00838 0.504 TTGATTTGGCTA Rv0602c_nonpal_1 37_up_of_Rv2172c 25 36 + -2.64384 0.00838 0.504 TTGATTTGGCTA Rv1776c_nonpal_1 antisense_pks6_431_from_start 9 14 - 1.05479 0.00838 0.802 TTCACG Rv1776c_nonpal_1 antisense_pks6_430_from_start 9 14 - 1.05479 0.00838 0.802 TTCACG Rv1776c_nonpal_1 sense_pks6_424_from_start 34 39 + 1.05479 0.00838 0.802 TTCACG Rv1776c_nonpal_1 sense_pks6_423_from_start 34 39 + 1.05479 0.00838 0.802 TTCACG Rv2324_nonpal_1 sense_pks6_424_from_start 10 28 + 2.63768 0.00838 0.364 ATAACAGCGTATCCAGATC Rv2324_nonpal_1 sense_pks6_423_from_start 10 28 + 2.63768 0.00838 0.364 ATAACAGCGTATCCAGATC Rv2324_nonpal_1 antisense_pks6_431_from_start 20 38 - 2.63768 0.00838 0.364 ATAACAGCGTATCCAGATC Rv2324_nonpal_1 antisense_pks6_430_from_start 20 38 - 2.63768 0.00838 0.364 ATAACAGCGTATCCAGATC Rv0135c_nonpal_2 4999_down_of_Rv3180c 1 28 + -28.1064 0.00838 0.464 TACCGTCAAAGCACAAAGTACACCAATC Rv0135c_nonpal_2 10041_up_of_Rv3188 1 28 + -28.1064 0.00838 0.464 TACCGTCAAAGCACAAAGTACACCAATC Rv0135c_nonpal_2 3360_up_of_Rv3179 1 28 + -28.1064 0.00838 0.464 TACCGTCAAAGCACAAAGTACACCAATC Rv0135c_nonpal_2 8506_up_of_Rv3186 1 28 + -28.1064 0.00838 0.464 TACCGTCAAAGCACAAAGTACACCAATC Rv0135c_nonpal_2 13078_down_of_Rv3190c 1 28 + -28.1064 0.00838 0.464 TACCGTCAAAGCACAAAGTACACCAATC Rv0472c_nonpal_1 sense_Rv2038c_183_from_start 14 24 + -6.06731 0.00838 0.266 TGGGCGTATCC Rv1255c_nonpal_1 sense_fadE7_118_to_stop 2 21 + -5.90805 0.00838 0.465 GGCAACGGGATATCGCTGGA Rv1255c_nonpal_1 antisense_fadE7_121_to_stop 17 36 - -5.90805 0.00838 0.465 GGCAACGGGATATCGCTGGA Rv3574_nonpal_2 37_up_of_Rv2172c 11 38 + -43.7521 0.00838 0.482 CCATGCTCCAGCGGTTGATTTGGCTACA Rv3574_nonpal_2 sense_mptA_23_from_start 11 38 + -43.7521 0.00838 0.482 CCATGCTCCAGCGGTTGATTTGGCTACA Rv3681c_nonpal_1 antisense_mmpL4_1187_to_stop 16 35 + -3.16456 0.00838 0.456 CTCCAGAAATCATCAAAATC Rv3681c_nonpal_1 sense_mmpL4_1184_to_stop 3 22 - -3.16456 0.00838 0.456 CTCCAGAAATCATCAAAATC Rv1167c_nonpal_1 antisense_Rv0370c_389_from_start 11 25 - -7.89423 0.00839 0.94 ACCCCTCCAGTGCTG Rv2506_nonpal_1 sense_pks6_424_from_start 4 22 - -6.92553 0.0084 0.621 GATACGCTGTTATCGCACA Rv2506_nonpal_1 sense_pks6_423_from_start 4 22 - -6.92553 0.0084 0.621 GATACGCTGTTATCGCACA Rv1219c_nonpal_1 antisense_cobK_311_from_start 19 33 + -2.12658 0.0084 0.599 TACCGGGATCCCACG Rv1219c_nonpal_1 sense_cobK_304_from_start 15 29 - -2.12658 0.0084 0.599 TACCGGGATCCCACG Rv0767c_nonpal_1 4_up_of_Rv1049 16 30 + 1.78571 0.0084 0.445 CTGGAGTAATGGGCA Rv0767c_nonpal_1 7_up_of_Rv1049 8 22 - 1.78571 0.0084 0.445 CTGGAGTAATGGGCA Rv1404_nonpal_1 antisense_frdA_787_from_start 7 32 - -1.8625 0.00841 0.108 CTACCGCTACCTCCAGGATTACGACC Rv0757_pal_1 sense_gca_460_from_start 13 26 + 2.21519 0.00841 0.719 CTGGCGTATCAATA Rv0757_pal_1 antisense_gca_467_from_start 22 35 + 2.21519 0.00841 0.719 TATTGATACGCCAG Rv0757_pal_1 sense_gca_460_from_start 13 26 - 2.21519 0.00841 0.719 TATTGATACGCCAG Rv0757_pal_1 antisense_gca_467_from_start 22 35 - 2.21519 0.00841 0.719 CTGGCGTATCAATA Rv1353c_nonpal_2 antisense_Rv1461_559_from_start 2 22 - -43.7094 0.00841 0.357 ATCCCTGCCGGCGATAATAAG Rv1353c_nonpal_2 9761_down_of_Rv3190c 5 25 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 43_up_of_Rv3179 5 25 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 6724_up_of_Rv3188 5 25 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 1682_down_of_Rv3180c 5 25 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 5189_up_of_Rv3186 5 25 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 9761_down_of_Rv3190c 8 28 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 6724_up_of_Rv3188 8 28 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 43_up_of_Rv3179 8 28 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 1682_down_of_Rv3180c 8 28 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 5189_up_of_Rv3186 8 28 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 9767_down_of_Rv3190c 11 31 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 49_up_of_Rv3179 11 31 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 1688_down_of_Rv3180c 11 31 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 6730_up_of_Rv3188 11 31 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 5195_up_of_Rv3186 11 31 - -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 9767_down_of_Rv3190c 14 34 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 1688_down_of_Rv3180c 14 34 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 49_up_of_Rv3179 14 34 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 6730_up_of_Rv3188 14 34 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 5195_up_of_Rv3186 14 34 - -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 antisense_Rv2279_293_to_stop 18 38 - -43.7094 0.00841 0.357 ACGGATAGGGGATCTCAGTAC Rv1353c_nonpal_2 sense_Rv2279_300_to_stop 10 30 + -43.7094 0.00841 0.357 ACGGATAGGGGATCTCAGTAC Rv1353c_nonpal_2 5188_up_of_Rv3186 14 34 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 1681_down_of_Rv3180c 14 34 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 9760_down_of_Rv3190c 14 34 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 6723_up_of_Rv3188 14 34 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 42_up_of_Rv3179 14 34 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 5188_up_of_Rv3186 17 37 + -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 1681_down_of_Rv3180c 17 37 + -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 9760_down_of_Rv3190c 17 37 + -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 6723_up_of_Rv3188 17 37 + -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 42_up_of_Rv3179 17 37 + -43.7094 0.00841 0.357 ACTGATCGGTGTACTTATAAC Rv1353c_nonpal_2 9754_down_of_Rv3190c 20 40 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 5182_up_of_Rv3186 20 40 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 6717_up_of_Rv3188 20 40 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 36_up_of_Rv3179 20 40 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv1353c_nonpal_2 1675_down_of_Rv3180c 20 40 + -43.7094 0.00841 0.357 TATACTGATCGGTGTACTTAT Rv3849_nonpal_1 antisense_Rv1461_559_from_start 17 28 + -4.16438 0.00841 0.735 AGGGATTACTGT Rv3849_nonpal_1 sense_Rv1461_552_from_start 20 31 - -4.16438 0.00841 0.735 AGGGATTACTGT Rv0691c_nonpal_1 7_up_of_Rv1049 5 18 - -2.90625 0.00841 0.553 AGTAATGGGCAAAG Rv0691c_nonpal_1 4_up_of_Rv1049 20 33 + -2.90625 0.00841 0.553 AGTAATGGGCAAAG Rv1049_nonpal_2 sense_Rv2279_300_to_stop 9 23 - -1.38667 0.00841 0.659 GATCCCCTATCCGTA Rv1049_nonpal_2 antisense_Rv2279_293_to_stop 25 39 + -1.38667 0.00841 0.659 GATCCCCTATCCGTA Rv0023_nonpal_1 sense_bioB_253_to_stop 7 27 - 2.02817 0.00841 0.167 CATTACCTCCAGGTCGGCGAA Rv3676_pal_1 antisense_aldA_642_from_start 22 37 + -6.26667 0.00841 0.626 GGTGACGATGTTGACA Rv3676_pal_1 antisense_aldA_642_from_start 22 37 - -6.26667 0.00841 0.626 TGTCAACATCGTCACC Rv2250c_nonpal_1 sense_pks9_325_to_stop 20 29 + 1.05797 0.00842 0.499 AGATGGCTAT Rv0135c_nonpal_2 antisense_pyrC_541_to_stop 4 31 + -28.1383 0.00842 0.464 GGGTGACCTCGGCGGTGATCGAAATACC Rv3488_nonpal_2 93_up_of_lpqG 5 32 - -37.7872 0.00843 0.315 GGGTACTGGCATCGACGGGCCCTACAAT Rv1473A_nonpal_1 10_up_of_Rv1866 23 36 - -8.68493 0.00844 0.449 TCACCATATCGGTG Rv1473A_nonpal_2 sense_Rv1278_1158_to_stop 20 27 + -6.12329 0.00844 0.415 AGAGGTCG Rv3249c_nonpal_2 sense_treZ_467_to_stop 3 17 + 0.12 0.00844 0.666 GAAGAGTGGGGGGCC Rv3249c_nonpal_2 877_up_of_treZ 3 17 + 0.12 0.00844 0.666 GAAGAGTGGGGGGCC Rv3249c_nonpal_2 antisense_treZ_470_to_stop 21 35 - 0.12 0.00844 0.666 GAAGAGTGGGGGGCC Rv3249c_nonpal_2 antisense_treY_785_to_stop 21 35 - 0.12 0.00844 0.666 GAAGAGTGGGGGGCC Rv3249c_nonpal_2 880_up_of_treZ 21 35 - 0.12 0.00844 0.666 GAAGAGTGGGGGGCC Rv3736_nonpal_1 sense_metA_384_from_start 7 21 + 2.05797 0.00845 0.626 AAGATTTCCGCTGAT Rv2887_pal_1 10_up_of_Rv1866 23 37 + -0.5875 0.00845 0.382 CACCGATATGGTGAC Rv2887_pal_1 10_up_of_Rv1866 23 37 - -0.5875 0.00845 0.382 GTCACCATATCGGTG Rv0135c_nonpal_1 sense_pks9_325_to_stop 28 38 - -2.78125 0.00845 0.503 GGCAAACCGAT Rv0135c_nonpal_1 10_up_of_Rv1866 29 39 - -2.78125 0.00845 0.503 GTGTCACCATA Rv0022c_pal_1 13078_down_of_Rv3190c 10 31 + 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 3360_up_of_Rv3179 10 31 + 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 10041_up_of_Rv3188 10 31 + 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 8506_up_of_Rv3186 10 31 + 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 4999_down_of_Rv3180c 10 31 + 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 3353_up_of_Rv3179 17 38 + 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 8499_up_of_Rv3186 17 38 + 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 13071_down_of_Rv3190c 17 38 + 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 10034_up_of_Rv3188 17 38 + 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 4992_down_of_Rv3180c 17 38 + 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 3360_up_of_Rv3179 10 31 - 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 8506_up_of_Rv3186 10 31 - 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 4999_down_of_Rv3180c 10 31 - 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 13078_down_of_Rv3190c 10 31 - 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 10041_up_of_Rv3188 10 31 - 0.364865 0.00845 0.175 ACCGATTGGTGTACTTTGTGCT Rv0022c_pal_1 13071_down_of_Rv3190c 17 38 - 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 3353_up_of_Rv3179 17 38 - 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 8499_up_of_Rv3186 17 38 - 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 10034_up_of_Rv3188 17 38 - 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0022c_pal_1 4992_down_of_Rv3180c 17 38 - 0.364865 0.00845 0.175 AGCACAAAGTACACCAATCGGT Rv0465c_nonpal_1 sense_PE_PGRS57_112_from_start 11 34 + -20.0805 0.00846 0.818 CGACCACGCAGGTGCTGGCTGCGG Rv0465c_nonpal_1 sense_PE_PGRS54_112_from_start 11 34 + -20.0805 0.00846 0.818 CGACCACGCAGGTGCTGGCTGCGG Rv0653c_pal_1 sense_gca_460_from_start 7 30 + -0.189873 0.00846 0.193 GACATGCTGGCGTATCAATATCAC Rv0653c_pal_1 sense_gca_460_from_start 7 30 - -0.189873 0.00846 0.193 GTGATATTGATACGCCAGCATGTC Rv3416_nonpal_1 1662_up_of_Rv2018 5 29 + -10.299 0.00846 0.584 GAATCGGCCTTCTCCAGTGAAATTG Rv0023_nonpal_1 5188_up_of_Rv3186 2 22 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 1681_down_of_Rv3180c 2 22 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 9760_down_of_Rv3190c 2 22 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 42_up_of_Rv3179 2 22 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 6723_up_of_Rv3188 2 22 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 6717_up_of_Rv3188 8 28 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 36_up_of_Rv3179 8 28 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 5182_up_of_Rv3186 8 28 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 9754_down_of_Rv3190c 8 28 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 1675_down_of_Rv3180c 8 28 + 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 1682_down_of_Rv3180c 20 40 - 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 5189_up_of_Rv3186 20 40 - 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 9761_down_of_Rv3190c 20 40 - 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 6724_up_of_Rv3188 20 40 - 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv0023_nonpal_1 43_up_of_Rv3179 20 40 - 2.01408 0.00846 0.167 GCCGACTCCTTGTATACTGAT Rv1719_nonpal_1 antisense_pks6_431_from_start 13 29 + 0.513158 0.00847 1 AACCCACGATCTGGATA Rv1719_nonpal_1 antisense_pks6_430_from_start 13 29 + 0.513158 0.00847 1 AACCCACGATCTGGATA Rv1719_nonpal_1 sense_pks6_424_from_start 19 35 - 0.513158 0.00847 1 AACCCACGATCTGGATA Rv1719_nonpal_1 sense_pks6_423_from_start 19 35 - 0.513158 0.00847 1 AACCCACGATCTGGATA Rv2887_nonpal_1 sense_PPE34_3066_to_stop 14 28 + -3.25 0.00847 0.519 TCCCTCCAGATTACG Rv2887_nonpal_1 sense_PPE34_1664_from_start 14 28 + -3.25 0.00847 0.519 TCCCTCCAGATTACG Rv2887_nonpal_1 sense_PPE34_1439_from_start 14 28 + -3.25 0.00847 0.519 TCCCTCCAGATTACG Rv2887_nonpal_1 antisense_PPE34_1661_from_start 10 24 - -3.25 0.00847 0.519 TCCCTCCAGATTACG Rv3133c_nonpal_1 sense_pks9_325_to_stop 5 19 - 2.33333 0.00847 0.573 GGAGACGATTGCGTA Rv0472c_nonpal_1 9767_down_of_Rv3190c 4 14 - -6.14423 0.00847 0.266 TAACCGACACT Rv0472c_nonpal_1 49_up_of_Rv3179 4 14 - -6.14423 0.00847 0.266 TAACCGACACT Rv0472c_nonpal_1 6730_up_of_Rv3188 4 14 - -6.14423 0.00847 0.266 TAACCGACACT Rv0472c_nonpal_1 1688_down_of_Rv3180c 4 14 - -6.14423 0.00847 0.266 TAACCGACACT Rv0472c_nonpal_1 5195_up_of_Rv3186 4 14 - -6.14423 0.00847 0.266 TAACCGACACT Rv2034_nonpal_1 antisense_gca_467_from_start 6 16 - 2.80882 0.00847 0.363 AGTCTTACGGC Rv0022c_nonpal_1 antisense_PPE24_1570_to_stop 16 30 - -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0022c_nonpal_1 antisense_PPE24_1345_to_stop 16 30 - -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0022c_nonpal_1 antisense_PPE24_1270_to_stop 16 30 - -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0022c_nonpal_1 sense_PPE24_1577_to_stop 18 32 + -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0022c_nonpal_1 sense_PPE24_1352_to_stop 18 32 + -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0022c_nonpal_1 sense_PPE24_1277_to_stop 18 32 + -0.616438 0.00848 0.257 GGTATCACAATCGGT Rv0691c_pal_2 antisense_aldA_642_from_start 22 30 + -4 0.00848 0.606 GGTGACGAT Rv0691c_pal_2 antisense_aldA_642_from_start 22 30 - -4 0.00848 0.606 ATCGTCACC Rv2009_pal_1 sense_accA1_598_from_start 3 31 + -1.19708 0.00849 0.142 ACGATACGCTATTCCTGGAGCGGTTTGTG Rv2009_pal_1 antisense_accA1_595_from_start 7 35 + -1.19708 0.00849 0.142 CACAAACCGCTCCAGGAATAGCGTATCGT Rv2009_pal_1 sense_accA1_598_from_start 3 31 - -1.19708 0.00849 0.142 CACAAACCGCTCCAGGAATAGCGTATCGT Rv2009_pal_1 antisense_accA1_595_from_start 7 35 - -1.19708 0.00849 0.142 ACGATACGCTATTCCTGGAGCGGTTTGTG Rv0494_nonpal_2 antisense_Rv1251c_1309_from_start 2 16 + -10.5158 0.00849 1 CCGAGGTACAGCGGC Rv2887_nonpal_1 sense_PPE24_1577_to_stop 22 36 + -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv2887_nonpal_1 sense_PPE24_1352_to_stop 22 36 + -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv2887_nonpal_1 sense_PPE24_1277_to_stop 22 36 + -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv2887_nonpal_1 antisense_PPE24_1570_to_stop 12 26 - -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv2887_nonpal_1 antisense_PPE24_1345_to_stop 12 26 - -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv2887_nonpal_1 antisense_PPE24_1270_to_stop 12 26 - -3.2625 0.00849 0.519 TCACAATCGGTGGCT Rv0602c_nonpal_1 4_up_of_Rv1049 3 14 - -2.69863 0.00849 0.504 CTCGTGTAGCTA Rv0602c_nonpal_1 7_up_of_Rv1049 24 35 + -2.69863 0.00849 0.504 CTCGTGTAGCTA Rv0767c_nonpal_2 sense_Rv1461_475_from_start 7 27 + -2.36709 0.00851 0.518 AGAGAGGATCTGGAGGCTCAA Rv0767c_nonpal_2 antisense_Rv1461_472_from_start 11 31 - -2.36709 0.00851 0.518 AGAGAGGATCTGGAGGCTCAA Rv0081_pal_1 antisense_aldA_642_from_start 17 32 + -0.6 0.00851 0.443 CTGGAGGTGACGATGT Rv0081_pal_1 antisense_aldA_642_from_start 17 32 - -0.6 0.00851 0.443 ACATCGTCACCTCCAG Rv0273c_pal_1 sense_bioB_253_to_stop 11 26 + -1.15 0.00851 0.471 CCGACCTGGAGGTAAT Rv0273c_pal_1 sense_bioB_253_to_stop 11 26 - -1.15 0.00851 0.471 ATTACCTCCAGGTCGG Rv1423_nonpal_2 sense_Rv1461_475_from_start 5 24 - -25.6064 0.00852 1 AGCCTCCAGATCCTCTCTGA Rv1423_nonpal_2 antisense_Rv1461_472_from_start 14 33 + -25.6064 0.00852 1 AGCCTCCAGATCCTCTCTGA Rv1473A_nonpal_2 antisense_PPE24_1570_to_stop 18 25 - -6.20548 0.00852 0.415 CACAATCG Rv1473A_nonpal_2 antisense_PPE24_1345_to_stop 18 25 - -6.20548 0.00852 0.415 CACAATCG Rv1473A_nonpal_2 antisense_PPE24_1270_to_stop 18 25 - -6.20548 0.00852 0.415 CACAATCG Rv1473A_nonpal_2 sense_PPE24_1277_to_stop 23 30 + -6.20548 0.00852 0.415 CACAATCG Rv1473A_nonpal_2 sense_PPE24_1577_to_stop 23 30 + -6.20548 0.00852 0.415 CACAATCG Rv1473A_nonpal_2 sense_PPE24_1352_to_stop 23 30 + -6.20548 0.00852 0.415 CACAATCG Rv0757_nonpal_1 antisense_Rv1251c_1309_from_start 19 39 - -2.75949 0.00852 0.595 TCGTTCAGCTTGAAGGCGCTG Rv1674c_nonpal_1 sense_Rv1461_475_from_start 5 22 - -11.2553 0.00852 0.385 CCTCCAGATCCTCTCTGA Rv1674c_nonpal_1 antisense_Rv1461_472_from_start 16 33 + -11.2553 0.00852 0.385 CCTCCAGATCCTCTCTGA Rv1994c_nonpal_1 sense_mptA_23_from_start 21 35 + 1.53425 0.00852 0.298 GCGGTTGATTTGGCT Rv1994c_nonpal_1 37_up_of_Rv2172c 21 35 + 1.53425 0.00852 0.298 GCGGTTGATTTGGCT Rv0022c_pal_1 sense_Rv2279_300_to_stop 1 22 + 0.337838 0.00852 0.175 ATCCACCATACGGATAGGGGAT Rv0022c_pal_1 sense_Rv2279_300_to_stop 1 22 - 0.337838 0.00852 0.175 ATCCCCTATCCGTATGGTGGAT Rv0023_pal_1 antisense_treZ_470_to_stop 6 13 + -3.50633 0.00852 0.531 CTGAAACG Rv0023_pal_1 antisense_treY_785_to_stop 6 13 + -3.50633 0.00852 0.531 CTGAAACG Rv0023_pal_1 880_up_of_treZ 6 13 + -3.50633 0.00852 0.531 CTGAAACG Rv0023_pal_1 880_up_of_treZ 6 13 - -3.50633 0.00852 0.531 CGTTTCAG Rv0023_pal_1 antisense_treY_785_to_stop 6 13 - -3.50633 0.00852 0.531 CGTTTCAG Rv0023_pal_1 antisense_treZ_470_to_stop 6 13 - -3.50633 0.00852 0.531 CGTTTCAG Rv0023_pal_1 sense_treZ_467_to_stop 25 32 + -3.50633 0.00852 0.531 CGTTTCAG Rv0023_pal_1 877_up_of_treZ 25 32 + -3.50633 0.00852 0.531 CGTTTCAG Rv0023_pal_1 877_up_of_treZ 25 32 - -3.50633 0.00852 0.531 CTGAAACG Rv0023_pal_1 sense_treZ_467_to_stop 25 32 - -3.50633 0.00852 0.531 CTGAAACG Rv1956_pal_1 sense_pks9_325_to_stop 7 14 + -2.02326 0.00853 0.247 CGCAATCG Rv1956_pal_1 sense_pks9_325_to_stop 7 14 - -2.02326 0.00853 0.247 CGATTGCG Rv0302_nonpal_1 sense_gca_460_from_start 16 30 - 1.6087 0.00853 0.446 GTGATATTGATACGC Rv0302_nonpal_1 antisense_gca_467_from_start 18 32 + 1.6087 0.00853 0.446 GTGATATTGATACGC Rv2788_nonpal_2 antisense_Rv0370c_389_from_start 9 36 - -26.593 0.00853 0.546 ACCGCGGACCGACCCCTCCAGTGCTGCT Rv0576_nonpal_1 1681_down_of_Rv3180c 8 33 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 5188_up_of_Rv3186 8 33 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 9760_down_of_Rv3190c 8 33 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 42_up_of_Rv3179 8 33 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 6723_up_of_Rv3188 8 33 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 5182_up_of_Rv3186 14 39 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 1675_down_of_Rv3180c 14 39 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 9754_down_of_Rv3190c 14 39 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 6717_up_of_Rv3188 14 39 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 36_up_of_Rv3179 14 39 + -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 5189_up_of_Rv3186 9 34 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 9761_down_of_Rv3190c 9 34 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 1682_down_of_Rv3180c 9 34 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 43_up_of_Rv3179 9 34 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 6724_up_of_Rv3188 9 34 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 1688_down_of_Rv3180c 15 40 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 49_up_of_Rv3179 15 40 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 9767_down_of_Rv3190c 15 40 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 6730_up_of_Rv3188 15 40 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0576_nonpal_1 5195_up_of_Rv3186 15 40 - -2.28409 0.00854 0.16 TCCTTGTATACTGATCGGTGTACTTA Rv0767c_nonpal_2 447_down_of_accE5 5 25 + -2.37975 0.00854 0.518 GGCCAGGTAAGCCTCCAGATC Rv0767c_nonpal_2 antisense_Rv3282_217_to_stop 5 25 + -2.37975 0.00854 0.518 GGCCAGGTAAGCCTCCAGATC Rv0135c_nonpal_1 antisense_pks6_430_from_start 9 19 + -2.8125 0.00854 0.503 CGTGAACCCAC Rv0135c_nonpal_1 antisense_pks6_431_from_start 9 19 + -2.8125 0.00854 0.503 CGTGAACCCAC Rv0135c_nonpal_1 sense_pks6_424_from_start 29 39 - -2.8125 0.00854 0.503 CGTGAACCCAC Rv0135c_nonpal_1 sense_pks6_423_from_start 29 39 - -2.8125 0.00854 0.503 CGTGAACCCAC Rv3488_nonpal_1 sense_Rv1461_552_from_start 4 17 + -6.60294 0.00854 0.453 CAAGGAATATTTCG Rv0117_nonpal_1 antisense_aldA_642_from_start 3 29 + -19.1827 0.00854 0.55 CCAAAGCGTGACTGCTGGAGGTGACGA Rv2788_pal_1 antisense_Rv2279_293_to_stop 8 29 + -5.16667 0.00855 0.332 GGATCGATGTGTACTGAGATCC Rv2788_pal_1 sense_Rv2279_300_to_stop 19 40 + -5.16667 0.00855 0.332 GGATCTCAGTACACATCGATCC Rv2788_pal_1 antisense_Rv2279_293_to_stop 8 29 - -5.16667 0.00855 0.332 GGATCTCAGTACACATCGATCC Rv2788_pal_1 sense_Rv2279_300_to_stop 19 40 - -5.16667 0.00855 0.332 GGATCGATGTGTACTGAGATCC Rv1353c_pal_1 antisense_PPE24_1570_to_stop 13 23 + 3.93939 0.00855 0.334 GCCACCGATTG Rv1353c_pal_1 antisense_PPE24_1345_to_stop 13 23 + 3.93939 0.00855 0.334 GCCACCGATTG Rv1353c_pal_1 antisense_PPE24_1270_to_stop 13 23 + 3.93939 0.00855 0.334 GCCACCGATTG Rv1353c_pal_1 antisense_PPE24_1570_to_stop 13 23 - 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 antisense_PPE24_1345_to_stop 13 23 - 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 antisense_PPE24_1270_to_stop 13 23 - 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 sense_PPE24_1577_to_stop 25 35 + 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 sense_PPE24_1352_to_stop 25 35 + 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 sense_PPE24_1277_to_stop 25 35 + 3.93939 0.00855 0.334 CAATCGGTGGC Rv1353c_pal_1 sense_PPE24_1577_to_stop 25 35 - 3.93939 0.00855 0.334 GCCACCGATTG Rv1353c_pal_1 sense_PPE24_1352_to_stop 25 35 - 3.93939 0.00855 0.334 GCCACCGATTG Rv1353c_pal_1 sense_PPE24_1277_to_stop 25 35 - 3.93939 0.00855 0.334 GCCACCGATTG Rv1473A_nonpal_1 6724_up_of_Rv3188 1 14 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 5189_up_of_Rv3186 1 14 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 1682_down_of_Rv3180c 1 14 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 9761_down_of_Rv3190c 1 14 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 43_up_of_Rv3179 1 14 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 6730_up_of_Rv3188 7 20 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 1688_down_of_Rv3180c 7 20 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 5195_up_of_Rv3186 7 20 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 9767_down_of_Rv3190c 7 20 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv1473A_nonpal_1 49_up_of_Rv3179 7 20 - -8.75342 0.00855 0.449 TACTTATAACCGAC Rv2989_nonpal_1 sense_rocA_797_to_stop 11 31 + -4.06579 0.00855 0.662 TGGGTGGGTACCAATATCGGC Rv2989_nonpal_1 antisense_rocA_790_to_stop 17 37 - -4.06579 0.00855 0.662 TGGGTGGGTACCAATATCGGC Rv2250c_nonpal_1 93_up_of_lpqG 20 29 - 0.985507 0.00855 0.499 TACTGGCATC Rv0022c_nonpal_1 antisense_Rv0370c_389_from_start 5 19 - -0.657534 0.00856 0.257 CCAGTGCTGCTCATC Rv3736_pal_1 sense_gca_460_from_start 2 16 + 2.94286 0.00856 1 CCACCGACATGCTGG Rv3736_pal_1 sense_gca_460_from_start 2 16 - 2.94286 0.00856 1 CCAGCATGTCGGTGG Rv0135c_nonpal_2 antisense_aldA_642_from_start 12 39 + -28.2447 0.00857 0.464 GACTGCTGGAGGTGACGATGTTGACAAC Rv0047c_nonpal_2 9754_down_of_Rv3190c 5 32 + -42.5299 0.00858 0.353 CACGCCGACTCCTTGTATACTGATCGGT Rv0047c_nonpal_2 6717_up_of_Rv3188 5 32 + -42.5299 0.00858 0.353 CACGCCGACTCCTTGTATACTGATCGGT Rv0047c_nonpal_2 5182_up_of_Rv3186 5 32 + -42.5299 0.00858 0.353 CACGCCGACTCCTTGTATACTGATCGGT Rv0047c_nonpal_2 36_up_of_Rv3179 5 32 + -42.5299 0.00858 0.353 CACGCCGACTCCTTGTATACTGATCGGT Rv0047c_nonpal_2 1675_down_of_Rv3180c 5 32 + -42.5299 0.00858 0.353 CACGCCGACTCCTTGTATACTGATCGGT Rv0158_nonpal_1 93_up_of_lpqG 1 25 + -15.5377 0.00858 0.755 GCGCATTGTAGGGCCCGTCGATGCC Rv1828_pal_1 antisense_pyrC_541_to_stop 9 37 + -6.40426 0.00858 0.244 ACCTCGGCGGTGATCGAAATACCCTGGTC Rv1828_pal_1 sense_pyrC_548_to_stop 11 39 + -6.40426 0.00858 0.244 GACCAGGGTATTTCGATCACCGCCGAGGT Rv1828_pal_1 antisense_pyrC_541_to_stop 9 37 - -6.40426 0.00858 0.244 GACCAGGGTATTTCGATCACCGCCGAGGT Rv1828_pal_1 sense_pyrC_548_to_stop 11 39 - -6.40426 0.00858 0.244 ACCTCGGCGGTGATCGAAATACCCTGGTC Rv0022c_nonpal_1 1662_up_of_Rv2018 20 34 - -0.671233 0.00859 0.257 TGTATCAATTTCACT Rv0981_nonpal_2 sense_PPE34_1664_from_start 12 32 + -6.31579 0.00859 0.491 ATTCCCTCCAGATTACGTGAC Rv0981_nonpal_2 sense_PPE34_1439_from_start 12 32 + -6.31579 0.00859 0.491 ATTCCCTCCAGATTACGTGAC Rv0981_nonpal_2 sense_PPE34_3066_to_stop 12 32 + -6.31579 0.00859 0.491 ATTCCCTCCAGATTACGTGAC Rv0981_nonpal_2 antisense_PPE34_1661_from_start 6 26 - -6.31579 0.00859 0.491 ATTCCCTCCAGATTACGTGAC Rv0967_nonpal_2 sense_cobK_304_from_start 17 37 + -20.5213 0.00859 1 TGGGATCCCGGTACCGCCATC Rv0967_nonpal_2 antisense_cobK_311_from_start 11 31 - -20.5213 0.00859 1 TGGGATCCCGGTACCGCCATC Rv0158_nonpal_1 sense_gca_460_from_start 5 29 + -15.5472 0.00859 0.755 CCGACATGCTGGCGTATCAATATCA Rv1353c_pal_2 antisense_Rv1461_472_from_start 12 38 + -42.2051 0.0086 0.385 TGAGCCTCCAGATCCTCTCTGATCTGG Rv1353c_pal_2 antisense_Rv1461_472_from_start 12 38 - -42.2051 0.0086 0.385 CCAGATCAGAGAGGATCTGGAGGCTCA Rv1167c_nonpal_1 antisense_pyrC_541_to_stop 19 33 + -8.00962 0.0086 0.94 TGATCGAAATACCCT Rv1167c_nonpal_1 sense_pyrC_548_to_stop 15 29 - -8.00962 0.0086 0.94 TGATCGAAATACCCT Rv1956_nonpal_1 7_up_of_Rv1049 10 30 + -3.27907 0.0086 0.313 CCCATTACTCCAGACTCGTGT Rv1956_nonpal_1 4_up_of_Rv1049 8 28 - -3.27907 0.0086 0.313 CCCATTACTCCAGACTCGTGT Rv2374c_nonpal_1 antisense_Rv1461_559_from_start 6 33 - -14.6731 0.0086 0.553 TCGGTACAGTAATCCCTGCCGGCGATAA Rv2324_pal_1 antisense_Rv1251c_1309_from_start 18 32 + -0.311688 0.0086 1 CCAGCGCCTTCAAGC Rv2324_pal_1 antisense_Rv1251c_1309_from_start 18 32 - -0.311688 0.0086 1 GCTTGAAGGCGCTGG Rv1049_nonpal_1 sense_fadE7_118_to_stop 14 28 + 1.44286 0.00861 1 TCGCTGGAGTACCCG Rv1049_nonpal_1 antisense_fadE7_121_to_stop 10 24 - 1.44286 0.00861 1 TCGCTGGAGTACCCG Rv1674c_nonpal_1 sense_mmpL4_1184_to_stop 16 33 - -11.3085 0.00861 0.385 TTCGAATTGGTCTCCAGA Rv1674c_nonpal_1 antisense_mmpL4_1187_to_stop 5 22 + -11.3085 0.00861 0.385 TTCGAATTGGTCTCCAGA Rv0081_nonpal_2 antisense_mmpL4_1187_to_stop 11 32 + -30.9423 0.00861 0.729 TTGGTCTCCAGAAATCATCAAA Rv0081_nonpal_2 sense_mmpL4_1184_to_stop 6 27 - -30.9423 0.00861 0.729 TTGGTCTCCAGAAATCATCAAA Rv0767c_nonpal_2 antisense_rocA_790_to_stop 5 25 + -2.41772 0.00862 0.518 GCTATGGTAGCGGCCGATATT Rv0767c_pal_1 sense_fadE7_118_to_stop 28 39 + 3.27723 0.00862 0.989 GGTCATCCGGCA Rv0767c_pal_1 sense_fadE7_118_to_stop 28 39 - 3.27723 0.00862 0.989 TGCCGGATGACC Rv0302_pal_1 sense_Rv1461_552_from_start 5 16 + 3.16912 0.00862 0.435 AAGGAATATTTC Rv0302_pal_1 sense_Rv1461_552_from_start 5 16 - 3.16912 0.00862 0.435 GAAATATTCCTT Rv0158_nonpal_1 antisense_metA_391_from_start 7 31 + -15.566 0.00862 0.755 GCACCTGGTCACGTATCGAGATCAG Rv0302_nonpal_1 antisense_gca_467_from_start 6 20 + 1.57971 0.00863 0.446 GCCGTAAGACTTGTG Rv0981_nonpal_2 sense_Rv0674_10_to_stop 12 32 + -6.33684 0.00863 0.491 ACTCCTGGAGGTGACATGAGT Rv0465c_pal_2 sense_bioB_253_to_stop 7 14 + -1.49367 0.00864 0.957 TTCGCCGA Rv0465c_pal_2 sense_bioB_253_to_stop 7 14 - -1.49367 0.00864 0.957 TCGGCGAA Rv0465c_pal_2 880_up_of_treZ 33 40 + -1.49367 0.00864 0.957 TTCGCCCA Rv0465c_pal_2 antisense_treY_785_to_stop 33 40 + -1.49367 0.00864 0.957 TTCGCCCA Rv0465c_pal_2 antisense_treZ_470_to_stop 33 40 + -1.49367 0.00864 0.957 TTCGCCCA Rv0465c_pal_2 880_up_of_treZ 33 40 - -1.49367 0.00864 0.957 TGGGCGAA Rv0465c_pal_2 antisense_treZ_470_to_stop 33 40 - -1.49367 0.00864 0.957 TGGGCGAA Rv0465c_pal_2 antisense_treY_785_to_stop 33 40 - -1.49367 0.00864 0.957 TGGGCGAA Rv1994c_nonpal_1 sense_mptA_23_from_start 20 34 + 1.49315 0.00864 0.298 AGCGGTTGATTTGGC Rv1994c_nonpal_1 37_up_of_Rv2172c 20 34 + 1.49315 0.00864 0.298 AGCGGTTGATTTGGC Rv0767c_nonpal_2 antisense_aldA_642_from_start 13 33 + -2.43038 0.00864 0.518 ACTGCTGGAGGTGACGATGTT Rv2011c_nonpal_1 sense_pks9_325_to_stop 19 37 + 2.5 0.00865 0.819 CAGATGGCTATCGGTTTGC Rv0691c_nonpal_2 antisense_Rv1461_472_from_start 3 26 + -44.4231 0.00865 0.665 ATGACTCCTTGAGCCTCCAGATCC Rv0691c_nonpal_2 sense_Rv1461_475_from_start 12 35 - -44.4231 0.00865 0.665 ATGACTCCTTGAGCCTCCAGATCC Rv1828_pal_1 sense_Rv2038c_183_from_start 3 31 + -6.43617 0.00865 0.244 ACGCTGGACTGTGGGCGTATCCGGATCGG Rv1828_pal_1 sense_Rv2038c_183_from_start 3 31 - -6.43617 0.00865 0.244 CCGATCCGGATACGCCCACAGTCCAGCGT Rv0767c_pal_1 antisense_Rv2279_293_to_stop 8 19 + 3.26733 0.00866 0.989 GGATCGATGTGT Rv0767c_pal_1 antisense_Rv2279_293_to_stop 8 19 - 3.26733 0.00866 0.989 ACACATCGATCC Rv0767c_pal_1 sense_Rv2279_300_to_stop 29 40 + 3.26733 0.00866 0.989 ACACATCGATCC Rv0767c_pal_1 sense_Rv2279_300_to_stop 29 40 - 3.26733 0.00866 0.989 GGATCGATGTGT Rv3765c_nonpal_1 sense_Rv1278_1158_to_stop 8 27 - -11.8632 0.00867 0.654 CGACCTCTCCAGCCGCCAGC Rv3488_nonpal_1 sense_metA_384_from_start 6 19 - -6.67647 0.00867 0.454 CAGCGGAAATCTTG Rv3133c_nonpal_1 antisense_accA1_595_from_start 24 38 + 2.27536 0.00867 0.577 ATAGCGTATCGTCCC Rv0967_pal_2 sense_metA_384_from_start 15 25 + -11.3797 0.00867 1 CGCTGATCTCG Rv0967_pal_2 antisense_metA_391_from_start 23 33 + -11.3797 0.00867 1 CGAGATCAGCG Rv0967_pal_2 sense_metA_384_from_start 15 25 - -11.3797 0.00867 1 CGAGATCAGCG Rv0967_pal_2 antisense_metA_391_from_start 23 33 - -11.3797 0.00867 1 CGCTGATCTCG Rv3488_pal_1 sense_bioB_253_to_stop 20 27 + -3.83824 0.00867 0.351 AGGTAATG Rv3488_pal_1 sense_bioB_253_to_stop 20 27 - -3.83824 0.00867 0.351 CATTACCT Rv0602c_nonpal_1 sense_Rv0674_10_to_stop 13 24 + -2.78082 0.00868 0.504 CTCCTGGAGGTG Rv2034_nonpal_1 877_up_of_treZ 29 39 - 2.73529 0.00868 0.363 AAAAGAACTGA Rv2034_nonpal_1 sense_treZ_467_to_stop 29 39 - 2.73529 0.00868 0.363 AAAAGAACTGA Rv1353c_pal_2 6723_up_of_Rv3188 7 33 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 1681_down_of_Rv3180c 7 33 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 5188_up_of_Rv3186 7 33 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 9760_down_of_Rv3190c 7 33 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 42_up_of_Rv3179 7 33 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 5189_up_of_Rv3186 9 35 + -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 9761_down_of_Rv3190c 9 35 + -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 43_up_of_Rv3179 9 35 + -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 1682_down_of_Rv3180c 9 35 + -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 6724_up_of_Rv3188 9 35 + -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 6717_up_of_Rv3188 13 39 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 1675_down_of_Rv3180c 13 39 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 36_up_of_Rv3179 13 39 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 5182_up_of_Rv3186 13 39 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 9754_down_of_Rv3190c 13 39 + -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 5188_up_of_Rv3186 7 33 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 9760_down_of_Rv3190c 7 33 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 1681_down_of_Rv3180c 7 33 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 6723_up_of_Rv3188 7 33 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 42_up_of_Rv3179 7 33 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 5189_up_of_Rv3186 9 35 - -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 9761_down_of_Rv3190c 9 35 - -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 43_up_of_Rv3179 9 35 - -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 1682_down_of_Rv3180c 9 35 - -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 6724_up_of_Rv3188 9 35 - -42.2564 0.00869 0.385 CTCCTTGTATACTGATCGGTGTACTTA Rv1353c_pal_2 6717_up_of_Rv3188 13 39 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 5182_up_of_Rv3186 13 39 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 36_up_of_Rv3179 13 39 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 9754_down_of_Rv3190c 13 39 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv1353c_pal_2 1675_down_of_Rv3180c 13 39 - -42.2564 0.00869 0.385 TAAGTACACCGATCAGTATACAAGGAG Rv0324_nonpal_1 93_up_of_lpqG 16 23 - -3.92647 0.00869 0.458 CATCGACG Rv3855_nonpal_1 10_up_of_Rv1866 11 36 + -19.3654 0.00869 1 TTCTGCTGGAGGCACCGATATGGTGA Rv0023_pal_2 antisense_Rv1251c_1309_from_start 9 24 + 0.961039 0.00869 0.415 ACAGCGGCTCCAGCGC Rv0023_pal_2 antisense_Rv1251c_1309_from_start 9 24 - 0.961039 0.00869 0.415 GCGCTGGAGCCGCTGT Rv3488_pal_1 1662_up_of_Rv2018 28 35 + -3.86765 0.00869 0.351 TGATACAA Rv3488_pal_1 1662_up_of_Rv2018 28 35 - -3.86765 0.00869 0.351 TTGTATCA Rv0339c_nonpal_2 antisense_pks6_431_from_start 14 34 + -15.4423 0.0087 0.742 ACCCACGATCTGGATACGCTG Rv0339c_nonpal_2 antisense_pks6_430_from_start 14 34 + -15.4423 0.0087 0.742 ACCCACGATCTGGATACGCTG Rv0339c_nonpal_2 sense_pks6_424_from_start 14 34 - -15.4423 0.0087 0.742 ACCCACGATCTGGATACGCTG Rv0339c_nonpal_2 sense_pks6_423_from_start 14 34 - -15.4423 0.0087 0.742 ACCCACGATCTGGATACGCTG Rv2788_nonpal_2 sense_PPE24_1277_to_stop 5 32 - -26.7209 0.0087 0.546 ACCGATTGTGATACCCGCGGGTATCGTC Rv2788_nonpal_2 sense_PPE24_1577_to_stop 5 32 - -26.7209 0.0087 0.546 ACCGATTGTGATACCCGCGGGTATCGTC Rv2788_nonpal_2 sense_PPE24_1352_to_stop 5 32 - -26.7209 0.0087 0.546 ACCGATTGTGATACCCGCGGGTATCGTC Rv1219c_nonpal_1 antisense_aldA_642_from_start 15 29 - -2.26582 0.00871 0.599 TCGTCACCTCCAGCA Rv1353c_pal_1 sense_pks6_424_from_start 10 20 + 3.89394 0.00871 0.334 ATAACAGCGTA Rv1353c_pal_1 sense_pks6_423_from_start 10 20 + 3.89394 0.00871 0.334 ATAACAGCGTA Rv1353c_pal_1 sense_pks6_424_from_start 10 20 - 3.89394 0.00871 0.334 TACGCTGTTAT Rv1353c_pal_1 sense_pks6_423_from_start 10 20 - 3.89394 0.00871 0.334 TACGCTGTTAT Rv1353c_pal_1 antisense_pks6_431_from_start 28 38 + 3.89394 0.00871 0.334 TACGCTGTTAT Rv1353c_pal_1 antisense_pks6_430_from_start 28 38 + 3.89394 0.00871 0.334 TACGCTGTTAT Rv1353c_pal_1 antisense_pks6_431_from_start 28 38 - 3.89394 0.00871 0.334 ATAACAGCGTA Rv1353c_pal_1 antisense_pks6_430_from_start 28 38 - 3.89394 0.00871 0.334 ATAACAGCGTA Rv1167c_nonpal_1 sense_Rv2963_537_to_stop 21 35 + -8.07692 0.00872 0.94 CCCGAATCGTTCTGG Rv1167c_nonpal_1 antisense_Rv2963_530_to_stop 13 27 - -8.07692 0.00872 0.94 CCCGAATCGTTCTGG Rv0324_nonpal_1 13078_down_of_Rv3190c 21 28 + -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 4999_down_of_Rv3180c 21 28 + -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 8506_up_of_Rv3186 21 28 + -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 10041_up_of_Rv3188 21 28 + -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 3360_up_of_Rv3179 21 28 + -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 4992_down_of_Rv3180c 20 27 - -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 3353_up_of_Rv3179 20 27 - -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 13071_down_of_Rv3190c 20 27 - -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 8499_up_of_Rv3186 20 27 - -3.94118 0.00873 0.458 CACCAATC Rv0324_nonpal_1 10034_up_of_Rv3188 20 27 - -3.94118 0.00873 0.458 CACCAATC Rv3681c_nonpal_1 antisense_pyrC_541_to_stop 10 29 + -3.32911 0.00873 0.46 CCTCGGCGGTGATCGAAATA Rv3681c_nonpal_1 sense_pyrC_548_to_stop 19 38 - -3.32911 0.00873 0.46 CCTCGGCGGTGATCGAAATA Rv3557c_pal_1 sense_Rv1461_552_from_start 2 15 + -10.0577 0.00873 0.317 TTCAAGGAATATTT Rv3557c_pal_1 sense_Rv1461_552_from_start 2 15 - -10.0577 0.00873 0.317 AAATATTCCTTGAA Rv0135c_pal_1 7_up_of_Rv1049 11 20 + 0.34375 0.00874 0.313 CCATTACTCC Rv0135c_pal_1 4_up_of_Rv1049 18 27 + 0.34375 0.00874 0.313 GGAGTAATGG Rv0135c_pal_1 7_up_of_Rv1049 11 20 - 0.34375 0.00874 0.313 GGAGTAATGG Rv0135c_pal_1 4_up_of_Rv1049 18 27 - 0.34375 0.00874 0.313 CCATTACTCC Rv3736_nonpal_1 sense_pks9_325_to_stop 19 33 + 1.97101 0.00874 0.626 CAGATGGCTATCGGT Rv1776c_pal_1 sense_PE_PGRS57_112_from_start 21 35 + 0.341463 0.00874 1 GGTGCTGGCTGCGGG Rv1776c_pal_1 sense_PE_PGRS54_112_from_start 21 35 + 0.341463 0.00874 1 GGTGCTGGCTGCGGG Rv1776c_pal_1 sense_PE_PGRS57_112_from_start 21 35 - 0.341463 0.00874 1 CCCGCAGCCAGCACC Rv1776c_pal_1 sense_PE_PGRS54_112_from_start 21 35 - 0.341463 0.00874 1 CCCGCAGCCAGCACC Rv1255c_nonpal_1 antisense_rocA_790_to_stop 4 23 + -6.11494 0.00875 0.465 AGCTATGGTAGCGGCCGATA Rv1049_nonpal_1 93_up_of_lpqG 5 19 - 1.38571 0.00875 1 GACGGGCCCTACAAT Rv2642_nonpal_1 antisense_Rv1461_472_from_start 5 29 + -7.01163 0.00875 0.269 GACTCCTTGAGCCTCCAGATCCTCT Rv2642_nonpal_1 sense_Rv1461_475_from_start 9 33 - -7.01163 0.00875 0.269 GACTCCTTGAGCCTCCAGATCCTCT Rv3066_nonpal_1 antisense_Rv1461_416_from_start 10 29 + -2.78161 0.00876 1 GCGGCTACTCCAGCTACTAA Rv1353c_nonpal_1 sense_cobK_304_from_start 20 34 + 2.65152 0.00876 0.323 GATCCCGGTACCGCC Rv1353c_nonpal_1 antisense_cobK_311_from_start 14 28 - 2.65152 0.00876 0.323 GATCCCGGTACCGCC Rv1255c_pal_1 sense_Rv1461_552_from_start 3 28 + -0.804598 0.00877 0.536 TCAAGGAATATTTCGGTACAGTAATC Rv1255c_pal_1 sense_Rv1461_552_from_start 3 28 - -0.804598 0.00877 0.536 GATTACTGTACCGAAATATTCCTTGA Rv2989_nonpal_1 sense_Rv1461_475_from_start 10 30 + -4.18421 0.00877 0.662 GAGGATCTGGAGGCTCAAGGA Rv2989_nonpal_1 antisense_Rv1461_472_from_start 8 28 - -4.18421 0.00877 0.662 GAGGATCTGGAGGCTCAAGGA Rv2374c_nonpal_1 sense_accA1_598_from_start 9 36 - -14.7788 0.00877 0.553 CGCAACACAAACCGCTCCAGGAATAGCG Rv2374c_nonpal_1 antisense_accA1_595_from_start 2 29 + -14.7788 0.00877 0.553 CGCAACACAAACCGCTCCAGGAATAGCG Rv2887_nonpal_1 3353_up_of_Rv3179 9 23 + -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 13071_down_of_Rv3190c 9 23 + -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 4992_down_of_Rv3180c 9 23 + -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 10034_up_of_Rv3188 9 23 + -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 8499_up_of_Rv3186 9 23 + -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 4999_down_of_Rv3180c 25 39 - -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 13078_down_of_Rv3190c 25 39 - -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 10041_up_of_Rv3188 25 39 - -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 3360_up_of_Rv3179 25 39 - -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv2887_nonpal_1 8506_up_of_Rv3186 25 39 - -3.3875 0.00877 0.519 TACAGTAAACCGATT Rv1816_nonpal_2 sense_bioB_253_to_stop 11 38 + -47.4519 0.00878 0.788 CCGACCTGGAGGTAATGCCGGTCGGTGA Rv0691c_nonpal_2 sense_cobK_304_from_start 9 32 + -44.4904 0.00878 0.665 GCCCGCCGTGGGATCCCGGTACCG Rv0691c_nonpal_2 antisense_cobK_311_from_start 16 39 - -44.4904 0.00878 0.665 GCCCGCCGTGGGATCCCGGTACCG Rv0653c_pal_1 93_up_of_lpqG 15 38 + -0.303797 0.00878 0.194 CCGTCGATGCCAGTACCCCGAAAT Rv0653c_pal_1 93_up_of_lpqG 15 38 - -0.303797 0.00878 0.194 ATTTCGGGGTACTGGCATCGACGG Rv0678_pal_1 antisense_PPE34_1661_from_start 1 7 + -3.32353 0.00878 0.574 TCACTGT Rv0678_pal_1 antisense_PPE34_1661_from_start 1 7 - -3.32353 0.00878 0.574 ACAGTGA Rv0678_pal_1 1662_up_of_Rv2018 18 24 + -3.32353 0.00878 0.574 CCAGTGA Rv0678_pal_1 1662_up_of_Rv2018 18 24 - -3.32353 0.00878 0.574 TCACTGG Rv0678_pal_1 sense_PPE34_3066_to_stop 31 37 + -3.32353 0.00878 0.574 ACAGTGA Rv0678_pal_1 sense_PPE34_1664_from_start 31 37 + -3.32353 0.00878 0.574 ACAGTGA Rv0678_pal_1 sense_PPE34_1439_from_start 31 37 + -3.32353 0.00878 0.574 ACAGTGA Rv0678_pal_1 sense_PPE34_3066_to_stop 31 37 - -3.32353 0.00878 0.574 TCACTGT Rv0678_pal_1 sense_PPE34_1664_from_start 31 37 - -3.32353 0.00878 0.574 TCACTGT Rv0678_pal_1 sense_PPE34_1439_from_start 31 37 - -3.32353 0.00878 0.574 TCACTGT Rv0324_nonpal_1 sense_Rv0674_10_to_stop 26 33 - -4.02941 0.00879 0.458 CACTCATG Rv0757_nonpal_1 sense_pks6_424_from_start 9 29 + -2.89873 0.00879 0.595 GATAACAGCGTATCCAGATCG Rv0757_nonpal_1 sense_pks6_423_from_start 9 29 + -2.89873 0.00879 0.595 GATAACAGCGTATCCAGATCG Rv0757_nonpal_1 antisense_pks6_431_from_start 19 39 - -2.89873 0.00879 0.595 GATAACAGCGTATCCAGATCG Rv0757_nonpal_1 antisense_pks6_430_from_start 19 39 - -2.89873 0.00879 0.595 GATAACAGCGTATCCAGATCG Rv1674c_nonpal_1 1662_up_of_Rv2018 15 32 - -11.4149 0.00879 0.388 TATCAATTTCACTGGAGA Rv1033c_nonpal_1 antisense_gca_467_from_start 6 20 - -5.70886 0.00879 0.713 CACAAGTCTTACGGC Rv3849_nonpal_1 antisense_pks6_431_from_start 1 12 - -4.35616 0.00879 0.739 CACGAATGCTGG Rv3849_nonpal_1 antisense_pks6_430_from_start 1 12 - -4.35616 0.00879 0.739 CACGAATGCTGG Rv3124_nonpal_1 sense_Rv0674_10_to_stop 6 32 - -20.0096 0.0088 0.916 ACTCATGTCACCTCCAGGAGTTGAGTT Rv3830c_nonpal_1 sense_Rv1278_1158_to_stop 26 40 - -1.44595 0.00881 1 GCGGCTAGGTCAGCG Rv3765c_nonpal_1 sense_treZ_467_to_stop 21 40 + -11.9474 0.00881 0.654 AGCCCGTTTCAGTTCTTTTG Rv3765c_nonpal_1 877_up_of_treZ 21 40 + -11.9474 0.00881 0.654 AGCCCGTTTCAGTTCTTTTG Rv0757_nonpal_1 antisense_Rv2279_293_to_stop 20 40 + -2.91139 0.00881 0.595 ACTGAGATCCCCTATCCGTAT Rv0757_nonpal_1 sense_Rv2279_300_to_stop 8 28 - -2.91139 0.00881 0.595 ACTGAGATCCCCTATCCGTAT Rv0818_nonpal_1 sense_pyrC_548_to_stop 5 25 + -8.15957 0.00881 0.53 GCTAAGGACCAGGGTATTTCG Rv3133c_nonpal_1 sense_metA_384_from_start 1 15 - 2.23188 0.00882 0.577 GGAAATCTTGAGCCC Rv3488_pal_1 antisense_rocA_790_to_stop 9 16 + -3.94118 0.00882 0.351 TGGTAGCG Rv3488_pal_1 antisense_rocA_790_to_stop 9 16 - -3.94118 0.00882 0.351 CGCTACCA Rv3488_pal_1 sense_rocA_797_to_stop 32 39 + -3.94118 0.00882 0.351 CGCTACCA Rv3488_pal_1 sense_rocA_797_to_stop 32 39 - -3.94118 0.00882 0.351 TGGTAGCG Rv0302_nonpal_1 sense_mptA_23_from_start 5 19 - 1.52174 0.00882 0.446 GGAGCATGGCTCGGA Rv0302_nonpal_1 37_up_of_Rv2172c 5 19 - 1.52174 0.00882 0.446 GGAGCATGGCTCGGA Rv2250c_nonpal_1 antisense_gca_467_from_start 3 12 - 0.84058 0.00882 0.499 TTACGGCATG Rv1473A_pal_2 antisense_Rv1251c_1309_from_start 32 39 + -3.45205 0.00883 0.336 CTGAACGA Rv1473A_pal_2 antisense_Rv1251c_1309_from_start 32 39 - -3.45205 0.00883 0.336 TCGTTCAG Rv0023_pal_1 sense_Rv2038c_183_from_start 24 31 + -3.68354 0.00883 0.531 CGGATCGG Rv0023_pal_1 sense_Rv2038c_183_from_start 24 31 - -3.68354 0.00883 0.531 CCGATCCG Rv2021c_nonpal_1 antisense_Rv1461_559_from_start 3 23 - -2.26506 0.00883 0.591 AATCCCTGCCGGCGATAATAA Rv2989_pal_1 93_up_of_lpqG 10 26 + -4.31169 0.00883 1 AGGGCCCGTCGATGCCA Rv2989_pal_1 93_up_of_lpqG 10 26 - -4.31169 0.00883 1 TGGCATCGACGGGCCCT Rv1473A_pal_1 sense_Rv1278_1158_to_stop 29 40 + 0.0857143 0.00884 0.514 TGACCTAGCCGC Rv1473A_pal_1 sense_Rv1278_1158_to_stop 29 40 - 0.0857143 0.00884 0.514 GCGGCTAGGTCA Rv3488_pal_2 antisense_pyrC_541_to_stop 7 14 + -8.72093 0.00884 0.571 TGACCTCG Rv3488_pal_2 antisense_pyrC_541_to_stop 7 14 - -8.72093 0.00884 0.571 CGAGGTCA Rv3488_pal_2 sense_Rv1278_1158_to_stop 20 27 + -8.72093 0.00884 0.571 AGAGGTCG Rv3488_pal_2 sense_Rv1278_1158_to_stop 20 27 - -8.72093 0.00884 0.571 CGACCTCT Rv0273c_nonpal_1 sense_Rv1461_552_from_start 4 28 + 0.3 0.00884 1 CAAGGAATATTTCGGTACAGTAATC Rv0023_nonpal_2 antisense_Rv2963_530_to_stop 10 37 + -42.5288 0.00885 0.442 CTGCCAGAACGATTCGGGTACCCATGCC Rv0023_nonpal_2 sense_Rv2963_537_to_stop 11 38 - -42.5288 0.00885 0.442 CTGCCAGAACGATTCGGGTACCCATGCC Rv1828_nonpal_1 sense_Rv2038c_183_from_start 1 24 + -12.5106 0.00885 0.505 AGACGCTGGACTGTGGGCGTATCC Rv2324_nonpal_1 sense_pks9_325_to_stop 22 40 - 2.50725 0.00885 0.364 CGGGCAAACCGATAGCCAT Rv0653c_pal_1 sense_bioB_253_to_stop 11 34 + -0.329114 0.00885 0.194 CCGACCTGGAGGTAATGCCGGTCG Rv0653c_pal_1 sense_bioB_253_to_stop 11 34 - -0.329114 0.00885 0.194 CGACCGGCATTACCTCCAGGTCGG Rv3557c_pal_1 1681_down_of_Rv3180c 2 15 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 5188_up_of_Rv3186 2 15 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 9760_down_of_Rv3190c 2 15 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 42_up_of_Rv3179 2 15 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 6723_up_of_Rv3188 2 15 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 6717_up_of_Rv3188 8 21 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 36_up_of_Rv3179 8 21 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 5182_up_of_Rv3186 8 21 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 9754_down_of_Rv3190c 8 21 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 1675_down_of_Rv3180c 8 21 + -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 1681_down_of_Rv3180c 2 15 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 5188_up_of_Rv3186 2 15 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 9760_down_of_Rv3190c 2 15 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 42_up_of_Rv3179 2 15 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 6723_up_of_Rv3188 2 15 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 6717_up_of_Rv3188 8 21 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 36_up_of_Rv3179 8 21 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 5182_up_of_Rv3186 8 21 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 9754_down_of_Rv3190c 8 21 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 1675_down_of_Rv3180c 8 21 - -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 5189_up_of_Rv3186 27 40 + -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 9761_down_of_Rv3190c 27 40 + -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 1682_down_of_Rv3180c 27 40 + -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 43_up_of_Rv3179 27 40 + -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 6724_up_of_Rv3188 27 40 + -10.125 0.00886 0.317 TACAAGGAGTCGGC Rv3557c_pal_1 5189_up_of_Rv3186 27 40 - -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 9761_down_of_Rv3190c 27 40 - -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 6724_up_of_Rv3188 27 40 - -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 43_up_of_Rv3179 27 40 - -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_pal_1 1682_down_of_Rv3180c 27 40 - -10.125 0.00886 0.317 GCCGACTCCTTGTA Rv3557c_nonpal_1 sense_PPE24_1577_to_stop 18 37 + -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3557c_nonpal_1 sense_PPE24_1352_to_stop 18 37 + -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3557c_nonpal_1 sense_PPE24_1277_to_stop 18 37 + -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3557c_nonpal_1 antisense_PPE24_1570_to_stop 11 30 - -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3557c_nonpal_1 antisense_PPE24_1345_to_stop 11 30 - -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3557c_nonpal_1 antisense_PPE24_1270_to_stop 11 30 - -19.4231 0.00886 0.341 GGTATCACAATCGGTGGCTT Rv3830c_nonpal_1 antisense_rocA_790_to_stop 2 16 + -1.47297 0.00887 1 ATAGCTATGGTAGCG Rv0691c_nonpal_1 sense_PE_PGRS57_112_from_start 6 19 - -3.20312 0.00888 0.563 GCGTGGTCGCACTG Rv0691c_nonpal_1 sense_PE_PGRS54_112_from_start 6 19 - -3.20312 0.00888 0.563 GCGTGGTCGCACTG Rv0302_nonpal_2 antisense_pyrC_541_to_stop 7 17 - -3.32051 0.00888 1 CGCCGAGGTCA Rv0158_nonpal_1 antisense_fadE7_121_to_stop 5 29 + -15.7264 0.00889 0.755 ATGACCGGGTACTCCAGCGATATCC Rv0158_nonpal_1 sense_fadE7_118_to_stop 9 33 - -15.7264 0.00889 0.755 ATGACCGGGTACTCCAGCGATATCC Rv3574_pal_1 antisense_mmpL4_1187_to_stop 5 20 + 0.753623 0.00889 0.289 TTCGAATTGGTCTCCA Rv3574_pal_1 sense_mmpL4_1184_to_stop 18 33 + 0.753623 0.00889 0.289 TGGAGACCAATTCGAA Rv3574_pal_1 antisense_mmpL4_1187_to_stop 5 20 - 0.753623 0.00889 0.289 TGGAGACCAATTCGAA Rv3574_pal_1 sense_mmpL4_1184_to_stop 18 33 - 0.753623 0.00889 0.289 TTCGAATTGGTCTCCA Rv0880_nonpal_1 antisense_Rv1461_559_from_start 4 27 - -11.5684 0.00889 0.21 CAGTAATCCCTGCCGGCGATAATA Rv2021c_pal_1 sense_fadE7_118_to_stop 10 24 + 2.90805 0.00889 0.859 GATATCGCTGGAGTA Rv2021c_pal_1 antisense_fadE7_121_to_stop 14 28 + 2.90805 0.00889 0.859 TACTCCAGCGATATC Rv2021c_pal_1 sense_fadE7_118_to_stop 10 24 - 2.90805 0.00889 0.859 TACTCCAGCGATATC Rv2021c_pal_1 antisense_fadE7_121_to_stop 14 28 - 2.90805 0.00889 0.859 GATATCGCTGGAGTA Rv0678_nonpal_1 antisense_Rv1461_416_from_start 25 39 + 2.57812 0.00889 0.321 ACTAATCTCTGCTTC Rv3488_nonpal_1 antisense_Rv2279_293_to_stop 12 25 - -6.80882 0.0089 0.455 CTCAGTACACATCG Rv3488_nonpal_1 sense_Rv2279_300_to_stop 23 36 + -6.80882 0.0089 0.455 CTCAGTACACATCG Rv0494_nonpal_2 sense_mptA_23_from_start 21 35 - -10.7579 0.0089 1 AGCCAAATCAACCGC Rv0494_nonpal_2 37_up_of_Rv2172c 21 35 - -10.7579 0.0089 1 AGCCAAATCAACCGC Rv0494_nonpal_2 10_up_of_Rv1866 14 28 + -10.7579 0.0089 1 TGCTGGAGGCACCGA Rv0472c_nonpal_1 3353_up_of_Rv3179 2 12 + -6.29808 0.0089 0.266 GACCTCCTACA Rv0472c_nonpal_1 8499_up_of_Rv3186 2 12 + -6.29808 0.0089 0.266 GACCTCCTACA Rv0472c_nonpal_1 4992_down_of_Rv3180c 2 12 + -6.29808 0.0089 0.266 GACCTCCTACA Rv0472c_nonpal_1 13071_down_of_Rv3190c 2 12 + -6.29808 0.0089 0.266 GACCTCCTACA Rv0472c_nonpal_1 10034_up_of_Rv3188 2 12 + -6.29808 0.0089 0.266 GACCTCCTACA Rv2250c_nonpal_1 sense_Rv1461_552_from_start 11 20 - 0.797101 0.0089 0.499 TACCGAAATA Rv2250c_nonpal_1 antisense_Rv1461_559_from_start 28 37 + 0.797101 0.0089 0.499 TACCGAAATA Rv0135c_nonpal_2 antisense_Rv1461_416_from_start 9 36 + -28.4894 0.00891 0.471 TGCGGCTACTCCAGCTACTAATCTCTGC Rv3246c_nonpal_1 antisense_aldA_642_from_start 9 28 + -1.90123 0.00891 0.373 CGTGACTGCTGGAGGTGACG Rv1473A_pal_1 antisense_Rv1461_472_from_start 6 17 + 0.0571429 0.00891 0.514 ACTCCTTGAGCC Rv1473A_pal_1 antisense_Rv1461_472_from_start 6 17 - 0.0571429 0.00891 0.514 GGCTCAAGGAGT Rv1473A_pal_1 sense_Rv1461_475_from_start 21 32 + 0.0571429 0.00891 0.514 GGCTCAAGGAGT Rv1473A_pal_1 sense_Rv1461_475_from_start 21 32 - 0.0571429 0.00891 0.514 ACTCCTTGAGCC Rv1674c_pal_1 3353_up_of_Rv3179 3 24 + -2.02083 0.00891 0.162 ACCTCCTACAGTAAACCGATTG Rv1674c_pal_1 13071_down_of_Rv3190c 3 24 + -2.02083 0.00891 0.162 ACCTCCTACAGTAAACCGATTG Rv1674c_pal_1 4992_down_of_Rv3180c 3 24 + -2.02083 0.00891 0.162 ACCTCCTACAGTAAACCGATTG Rv1674c_pal_1 8499_up_of_Rv3186 3 24 + -2.02083 0.00891 0.162 ACCTCCTACAGTAAACCGATTG Rv1674c_pal_1 10034_up_of_Rv3188 3 24 + -2.02083 0.00891 0.162 ACCTCCTACAGTAAACCGATTG Rv1674c_pal_1 4992_down_of_Rv3180c 3 24 - -2.02083 0.00891 0.162 CAATCGGTTTACTGTAGGAGGT Rv1674c_pal_1 13071_down_of_Rv3190c 3 24 - -2.02083 0.00891 0.162 CAATCGGTTTACTGTAGGAGGT Rv1674c_pal_1 8499_up_of_Rv3186 3 24 - -2.02083 0.00891 0.162 CAATCGGTTTACTGTAGGAGGT Rv1674c_pal_1 3353_up_of_Rv3179 3 24 - -2.02083 0.00891 0.162 CAATCGGTTTACTGTAGGAGGT Rv1674c_pal_1 10034_up_of_Rv3188 3 24 - -2.02083 0.00891 0.162 CAATCGGTTTACTGTAGGAGGT Rv1219c_pal_1 sense_PPE24_1277_to_stop 1 9 + 0.0253165 0.00891 0.521 AGCTGACGA Rv1219c_pal_1 sense_PPE24_1577_to_stop 1 9 + 0.0253165 0.00891 0.521 AGCTGACGA Rv1219c_pal_1 sense_PPE24_1352_to_stop 1 9 + 0.0253165 0.00891 0.521 AGCTGACGA Rv1219c_pal_1 sense_PPE24_1277_to_stop 1 9 - 0.0253165 0.00891 0.521 TCGTCAGCT Rv1219c_pal_1 sense_PPE24_1577_to_stop 1 9 - 0.0253165 0.00891 0.521 TCGTCAGCT Rv1219c_pal_1 sense_PPE24_1352_to_stop 1 9 - 0.0253165 0.00891 0.521 TCGTCAGCT Rv0273c_pal_1 antisense_mmpL4_1187_to_stop 6 21 + -1.3375 0.00891 0.471 TCGAATTGGTCTCCAG Rv0273c_pal_1 sense_mmpL4_1184_to_stop 17 32 + -1.3375 0.00891 0.471 CTGGAGACCAATTCGA Rv0273c_pal_1 antisense_mmpL4_1187_to_stop 6 21 - -1.3375 0.00891 0.471 CTGGAGACCAATTCGA Rv0273c_pal_1 sense_mmpL4_1184_to_stop 17 32 - -1.3375 0.00891 0.471 TCGAATTGGTCTCCAG Rv0576_nonpal_1 sense_Rv1461_552_from_start 1 26 + -2.45455 0.00891 0.161 TTTCAAGGAATATTTCGGTACAGTAA Rv1353c_nonpal_1 antisense_Rv1461_472_from_start 10 24 + 2.60606 0.00892 0.323 CTTGAGCCTCCAGAT Rv1353c_nonpal_1 sense_Rv1461_475_from_start 14 28 - 2.60606 0.00892 0.323 CTTGAGCCTCCAGAT Rv0023_nonpal_1 antisense_PPE34_1661_from_start 3 23 + 1.88732 0.00892 0.171 ACTGTCACGTAATCTGGAGGG Rv0023_nonpal_1 sense_PPE34_3066_to_stop 15 35 - 1.88732 0.00892 0.171 ACTGTCACGTAATCTGGAGGG Rv0023_nonpal_1 sense_PPE34_1664_from_start 15 35 - 1.88732 0.00892 0.171 ACTGTCACGTAATCTGGAGGG Rv0023_nonpal_1 sense_PPE34_1439_from_start 15 35 - 1.88732 0.00892 0.171 ACTGTCACGTAATCTGGAGGG Rv3830c_pal_1 antisense_pyrC_541_to_stop 6 21 + -0.0519481 0.00892 1 GTGACCTCGGCGGTGA Rv3830c_pal_1 antisense_pyrC_541_to_stop 6 21 - -0.0519481 0.00892 1 TCACCGCCGAGGTCAC Rv0302_nonpal_1 sense_pks6_423_from_start 26 40 - 1.49275 0.00892 0.446 TCGTGAACCCACGAT Rv0302_nonpal_1 sense_pks6_424_from_start 26 40 - 1.49275 0.00892 0.446 TCGTGAACCCACGAT Rv0302_nonpal_1 antisense_pks6_431_from_start 8 22 + 1.49275 0.00892 0.446 TCGTGAACCCACGAT Rv0302_nonpal_1 antisense_pks6_430_from_start 8 22 + 1.49275 0.00892 0.446 TCGTGAACCCACGAT Rv1473A_nonpal_1 sense_Rv2038c_183_from_start 20 33 - -8.9726 0.00892 0.463 CGCCGATCCGGATA Rv3830c_nonpal_1 antisense_metA_391_from_start 19 33 + -1.5 0.00892 1 GTATCGAGATCAGCG Rv3830c_nonpal_1 sense_metA_384_from_start 15 29 - -1.5 0.00892 1 GTATCGAGATCAGCG Rv0602c_nonpal_1 5189_up_of_Rv3186 1 12 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 9761_down_of_Rv3190c 1 12 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 1682_down_of_Rv3180c 1 12 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 43_up_of_Rv3179 1 12 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 6724_up_of_Rv3188 1 12 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 5195_up_of_Rv3186 7 18 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 1688_down_of_Rv3180c 7 18 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 9767_down_of_Rv3190c 7 18 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 6730_up_of_Rv3188 7 18 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv0602c_nonpal_1 49_up_of_Rv3179 7 18 - -2.89041 0.00893 0.504 CTTATAACCGAC Rv1828_nonpal_1 antisense_frdA_787_from_start 7 30 + -12.5532 0.00893 0.505 GGTCGTAATCCTGGAGGTAGCGGT Rv0135c_nonpal_1 antisense_frdA_787_from_start 20 30 + -2.95312 0.00893 0.52 GAGGTAGCGGT Rv0653c_nonpal_1 sense_cobK_304_from_start 21 39 + -3 0.00893 0.276 ATCCCGGTACCGCCATCAT Rv0653c_nonpal_1 antisense_cobK_311_from_start 9 27 - -3 0.00893 0.276 ATCCCGGTACCGCCATCAT Rv0691c_nonpal_1 antisense_aldA_642_from_start 8 21 - -3.23438 0.00893 0.563 TCCAGCAGTCACGC Rv3736_nonpal_1 8506_up_of_Rv3186 21 35 + 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 13078_down_of_Rv3190c 21 35 + 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 3360_up_of_Rv3179 21 35 + 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 10041_up_of_Rv3188 21 35 + 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 4999_down_of_Rv3180c 21 35 + 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 8499_up_of_Rv3186 13 27 - 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 13071_down_of_Rv3190c 13 27 - 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 3353_up_of_Rv3179 13 27 - 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 10034_up_of_Rv3188 13 27 - 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv3736_nonpal_1 4992_down_of_Rv3180c 13 27 - 1.91304 0.00894 0.626 CACCAATCGGTTTAC Rv0472c_nonpal_1 877_up_of_treZ 25 35 - -6.33654 0.00894 0.266 GAACTGAAACG Rv0472c_nonpal_1 sense_treZ_467_to_stop 25 35 - -6.33654 0.00894 0.266 GAACTGAAACG Rv0472c_nonpal_1 880_up_of_treZ 3 13 + -6.33654 0.00894 0.266 GAACTGAAACG Rv0472c_nonpal_1 antisense_treZ_470_to_stop 3 13 + -6.33654 0.00894 0.266 GAACTGAAACG Rv0472c_nonpal_1 antisense_treY_785_to_stop 3 13 + -6.33654 0.00894 0.266 GAACTGAAACG Rv0081_nonpal_1 4_up_of_Rv1049 6 20 + -3.28 0.00894 0.505 CTACACGAGTCTGGA Rv0081_nonpal_1 7_up_of_Rv1049 18 32 - -3.28 0.00894 0.505 CTACACGAGTCTGGA Rv0576_nonpal_1 sense_PPE34_3066_to_stop 6 31 + -2.46591 0.00894 0.161 CCCCGGATTCCCTCCAGATTACGTGA Rv0576_nonpal_1 sense_PPE34_1664_from_start 6 31 + -2.46591 0.00894 0.161 CCCCGGATTCCCTCCAGATTACGTGA Rv0576_nonpal_1 sense_PPE34_1439_from_start 6 31 + -2.46591 0.00894 0.161 CCCCGGATTCCCTCCAGATTACGTGA Rv0576_nonpal_1 antisense_aldA_642_from_start 6 31 - -2.46591 0.00894 0.161 CATCGTCACCTCCAGCAGTCACGCTT Rv0576_nonpal_1 antisense_PPE34_1661_from_start 7 32 - -2.46591 0.00894 0.161 CCCCGGATTCCCTCCAGATTACGTGA Rv0465c_nonpal_2 antisense_cobK_311_from_start 7 34 - -12.5747 0.00894 1 CCGTGGGATCCCGGTACCGCCATCATCG Rv2021c_pal_1 antisense_Rv1461_559_from_start 5 19 + 2.89655 0.00894 0.859 ATTATCGCCGGCAGG Rv2021c_pal_1 antisense_Rv1461_559_from_start 5 19 - 2.89655 0.00894 0.859 CCTGCCGGCGATAAT Rv2989_nonpal_1 antisense_Rv1461_472_from_start 12 32 + -4.27632 0.00894 0.662 TGAGCCTCCAGATCCTCTCTG Rv2989_nonpal_1 sense_Rv1461_475_from_start 6 26 - -4.27632 0.00894 0.662 TGAGCCTCCAGATCCTCTCTG Rv2034_nonpal_1 antisense_accA1_595_from_start 6 16 + 2.64706 0.00894 0.363 ACACAAACCGC Rv2034_nonpal_1 sense_accA1_598_from_start 22 32 - 2.64706 0.00894 0.363 ACACAAACCGC Rv0880_nonpal_1 sense_Rv0674_10_to_stop 3 26 + -11.6 0.00895 0.21 TGCAACTCAACTCCTGGAGGTGAC Rv1994c_nonpal_1 antisense_Rv1461_416_from_start 20 34 - 1.38356 0.00895 0.306 AGAGATTAGTAGCTG Rv1776c_pal_1 5182_up_of_Rv3186 1 15 + 0.243902 0.00895 1 GGGGCACGCCGACTC Rv1776c_pal_1 36_up_of_Rv3179 1 15 + 0.243902 0.00895 1 GGGGCACGCCGACTC Rv1776c_pal_1 9754_down_of_Rv3190c 1 15 + 0.243902 0.00895 1 GGGGCACGCCGACTC Rv1776c_pal_1 6717_up_of_Rv3188 1 15 + 0.243902 0.00895 1 GGGGCACGCCGACTC Rv1776c_pal_1 1675_down_of_Rv3180c 1 15 + 0.243902 0.00895 1 GGGGCACGCCGACTC Rv1776c_pal_1 9754_down_of_Rv3190c 1 15 - 0.243902 0.00895 1 GAGTCGGCGTGCCCC Rv1776c_pal_1 6717_up_of_Rv3188 1 15 - 0.243902 0.00895 1 GAGTCGGCGTGCCCC Rv1776c_pal_1 5182_up_of_Rv3186 1 15 - 0.243902 0.00895 1 GAGTCGGCGTGCCCC Rv1776c_pal_1 36_up_of_Rv3179 1 15 - 0.243902 0.00895 1 GAGTCGGCGTGCCCC Rv1776c_pal_1 1675_down_of_Rv3180c 1 15 - 0.243902 0.00895 1 GAGTCGGCGTGCCCC Rv3830c_pal_1 antisense_Rv1251c_1309_from_start 12 27 + -0.0649351 0.00895 1 GCGGCTCCAGCGCCTT Rv3830c_pal_1 antisense_PPE24_1570_to_stop 14 29 + -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv3830c_pal_1 antisense_PPE24_1270_to_stop 14 29 + -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv3830c_pal_1 antisense_PPE24_1345_to_stop 14 29 + -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv3830c_pal_1 sense_PPE24_1577_to_stop 19 34 + -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 sense_PPE24_1352_to_stop 19 34 + -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 sense_PPE24_1277_to_stop 19 34 + -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 antisense_Rv1251c_1309_from_start 12 27 - -0.0649351 0.00895 1 AAGGCGCTGGAGCCGC Rv3830c_pal_1 antisense_PPE24_1570_to_stop 14 29 - -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 antisense_PPE24_1345_to_stop 14 29 - -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 antisense_PPE24_1270_to_stop 14 29 - -0.0649351 0.00895 1 GTATCACAATCGGTGG Rv3830c_pal_1 sense_PPE24_1352_to_stop 19 34 - -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv3830c_pal_1 sense_PPE24_1277_to_stop 19 34 - -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv3830c_pal_1 sense_PPE24_1577_to_stop 19 34 - -0.0649351 0.00895 1 CCACCGATTGTGATAC Rv2374c_nonpal_1 antisense_Rv1251c_1309_from_start 2 29 - -14.8942 0.00896 0.553 TGAAGGCGCTGGAGCCGCTGTACCTCGG Rv0880_nonpal_1 10_up_of_Rv1866 12 35 - -11.6105 0.00896 0.21 CACCATATCGGTGCCTCCAGCAGA Rv2887_pal_1 880_up_of_treZ 7 21 + -0.775 0.00897 0.382 TGAAACGGGCTGGAG Rv2887_pal_1 antisense_treZ_470_to_stop 7 21 + -0.775 0.00897 0.382 TGAAACGGGCTGGAG Rv2887_pal_1 antisense_treY_785_to_stop 7 21 + -0.775 0.00897 0.382 TGAAACGGGCTGGAG Rv2887_pal_1 sense_treZ_467_to_stop 17 31 + -0.775 0.00897 0.382 CTCCAGCCCGTTTCA Rv2887_pal_1 877_up_of_treZ 17 31 + -0.775 0.00897 0.382 CTCCAGCCCGTTTCA Rv2887_pal_1 antisense_treZ_470_to_stop 7 21 - -0.775 0.00897 0.382 CTCCAGCCCGTTTCA Rv2887_pal_1 antisense_treY_785_to_stop 7 21 - -0.775 0.00897 0.382 CTCCAGCCCGTTTCA Rv2887_pal_1 880_up_of_treZ 7 21 - -0.775 0.00897 0.382 CTCCAGCCCGTTTCA Rv2887_pal_1 877_up_of_treZ 17 31 - -0.775 0.00897 0.382 TGAAACGGGCTGGAG Rv2887_pal_1 sense_treZ_467_to_stop 17 31 - -0.775 0.00897 0.382 TGAAACGGGCTGGAG Rv2011c_pal_1 antisense_pyrC_541_to_stop 7 21 + 2.84722 0.00897 0.851 TGACCTCGGCGGTGA Rv2011c_pal_1 antisense_pyrC_541_to_stop 7 21 - 2.84722 0.00897 0.851 TCACCGCCGAGGTCA Rv0967_nonpal_2 antisense_Rv0370c_389_from_start 20 40 - -20.7766 0.00897 1 CGGCACCGCGGACCGACCCCT Rv2506_nonpal_1 antisense_PPE24_1270_to_stop 2 20 + -7.2234 0.00897 0.627 GGTAGACTAAAGCCACCGA Rv2506_nonpal_1 antisense_PPE24_1570_to_stop 2 20 + -7.2234 0.00897 0.627 GGTAGACTAAAGCCACCGA Rv2506_nonpal_1 antisense_PPE24_1345_to_stop 2 20 + -7.2234 0.00897 0.627 GGTAGACTAAAGCCACCGA Rv1816_pal_2 sense_bioB_253_to_stop 5 13 + -3.13699 0.00897 0.556 CGTTCGCCG Rv1816_pal_2 sense_bioB_253_to_stop 5 13 - -3.13699 0.00897 0.556 CGGCGAACG Rv0967_pal_2 sense_PPE24_1277_to_stop 7 17 + -11.3924 0.00897 1 CGATACCCGCG Rv0967_pal_2 sense_PPE24_1577_to_stop 7 17 + -11.3924 0.00897 1 CGATACCCGCG Rv0967_pal_2 sense_PPE24_1352_to_stop 7 17 + -11.3924 0.00897 1 CGATACCCGCG Rv0967_pal_2 sense_PPE24_1577_to_stop 7 17 - -11.3924 0.00897 1 CGCGGGTATCG Rv0967_pal_2 sense_PPE24_1352_to_stop 7 17 - -11.3924 0.00897 1 CGCGGGTATCG Rv0967_pal_2 sense_PPE24_1277_to_stop 7 17 - -11.3924 0.00897 1 CGCGGGTATCG Rv0023_pal_1 sense_PE_PGRS57_112_from_start 11 18 + -3.70886 0.00898 0.531 CGACCACG Rv0023_pal_1 sense_PE_PGRS54_112_from_start 11 18 + -3.70886 0.00898 0.531 CGACCACG Rv0023_pal_1 sense_PE_PGRS57_112_from_start 11 18 - -3.70886 0.00898 0.531 CGTGGTCG Rv0023_pal_1 sense_PE_PGRS54_112_from_start 11 18 - -3.70886 0.00898 0.531 CGTGGTCG Rv0767c_nonpal_2 sense_rocA_797_to_stop 20 40 + -2.58228 0.00898 0.521 ACCAATATCGGCCGCTACCAT Rv0767c_nonpal_2 antisense_rocA_790_to_stop 8 28 - -2.58228 0.00898 0.521 ACCAATATCGGCCGCTACCAT Rv0275c_nonpal_1 antisense_Rv3282_217_to_stop 6 31 - -17.2404 0.00898 0.275 GCCTCCGATCTGGAGGCTTACCTGGC Rv0275c_nonpal_1 447_down_of_accE5 6 31 - -17.2404 0.00898 0.275 GCCTCCGATCTGGAGGCTTACCTGGC Rv0602c_pal_1 antisense_Rv1251c_1309_from_start 29 36 + -3.50633 0.00898 0.182 AAGCTGAA Rv0602c_pal_1 antisense_Rv1251c_1309_from_start 29 36 - -3.50633 0.00898 0.182 TTCAGCTT Rv1473A_pal_2 antisense_rocA_790_to_stop 18 25 + -3.46575 0.00899 0.336 CCGATATT Rv1473A_pal_2 sense_rocA_797_to_stop 23 30 + -3.46575 0.00899 0.336 AATATCGG Rv1473A_pal_2 antisense_rocA_790_to_stop 18 25 - -3.46575 0.00899 0.336 AATATCGG Rv1473A_pal_2 sense_rocA_797_to_stop 23 30 - -3.46575 0.00899 0.336 CCGATATT Rv0981_nonpal_2 sense_pks6_424_from_start 2 22 + -6.51579 0.00899 0.491 AGTGTGCGATAACAGCGTATC Rv0981_nonpal_2 sense_pks6_423_from_start 2 22 + -6.51579 0.00899 0.491 AGTGTGCGATAACAGCGTATC Rv1167c_nonpal_1 antisense_Rv2963_530_to_stop 1 15 - -8.22115 0.00899 0.946 TGGCAGAGCTTCTTT Rv2250c_nonpal_1 37_up_of_Rv2172c 7 16 - 0.73913 0.009 0.499 GCATGGCTCG Rv2250c_nonpal_1 sense_mptA_23_from_start 7 16 - 0.73913 0.009 0.499 GCATGGCTCG Rv2887_nonpal_1 sense_Rv1461_475_from_start 5 19 + -3.4875 0.009 0.519 TCAGAGAGGATCTGG Rv2887_nonpal_1 antisense_Rv1461_472_from_start 19 33 - -3.4875 0.009 0.519 TCAGAGAGGATCTGG Rv0653c_pal_1 antisense_frdA_787_from_start 12 35 + -0.379747 0.009 0.194 TAATCCTGGAGGTAGCGGTAGCCG Rv0653c_pal_1 antisense_frdA_787_from_start 12 35 - -0.379747 0.009 0.194 CGGCTACCGCTACCTCCAGGATTA Rv3681c_nonpal_1 sense_Rv0674_10_to_stop 2 21 + -3.4557 0.00901 0.467 ATGCAACTCAACTCCTGGAG Rv0967_pal_1 sense_Rv2279_300_to_stop 17 23 + -3.36765 0.00901 0.808 GGGGATC Rv0967_pal_1 sense_Rv2279_300_to_stop 17 23 - -3.36765 0.00901 0.808 GATCCCC Rv0967_pal_1 antisense_Rv2279_293_to_stop 25 31 + -3.36765 0.00901 0.808 GATCCCC Rv0967_pal_1 antisense_Rv2279_293_to_stop 25 31 - -3.36765 0.00901 0.808 GGGGATC Rv3676_pal_1 sense_gca_460_from_start 14 29 + -6.55238 0.00902 0.626 TGGCGTATCAATATCA Rv3676_pal_1 antisense_gca_467_from_start 19 34 + -6.55238 0.00902 0.626 TGATATTGATACGCCA Rv3676_pal_1 sense_gca_460_from_start 14 29 - -6.55238 0.00902 0.626 TGATATTGATACGCCA Rv3676_pal_1 antisense_gca_467_from_start 19 34 - -6.55238 0.00902 0.626 TGGCGTATCAATATCA Rv1353c_nonpal_1 antisense_PPE24_1570_to_stop 23 37 + 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv1353c_nonpal_1 antisense_PPE24_1345_to_stop 23 37 + 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv1353c_nonpal_1 antisense_PPE24_1270_to_stop 23 37 + 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv1353c_nonpal_1 sense_PPE24_1577_to_stop 11 25 - 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv1353c_nonpal_1 sense_PPE24_1352_to_stop 11 25 - 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv1353c_nonpal_1 sense_PPE24_1277_to_stop 11 25 - 2.57576 0.00902 0.323 GTGATACCCGCGGGT Rv2034_nonpal_1 antisense_Rv2963_530_to_stop 12 22 + 2.61765 0.00903 0.363 GCCAGAACGAT Rv2034_nonpal_1 sense_Rv2963_537_to_stop 26 36 - 2.61765 0.00903 0.363 GCCAGAACGAT Rv1674c_pal_1 sense_pks9_325_to_stop 11 32 + -2.0625 0.00903 0.162 ATCGTCTCCAGATGGCTATCGG Rv1674c_pal_1 sense_pks9_325_to_stop 11 32 - -2.0625 0.00903 0.162 CCGATAGCCATCTGGAGACGAT Rv0678_nonpal_2 sense_gca_460_from_start 7 31 + -50.0598 0.00903 1 GACATGCTGGCGTATCAATATCACA Rv0302_pal_1 1662_up_of_Rv2018 5 16 + 3.06618 0.00905 0.447 GAATCGGCCTTC Rv0302_pal_1 1662_up_of_Rv2018 5 16 - 3.06618 0.00905 0.447 GAAGGCCGATTC Rv0691c_pal_1 1662_up_of_Rv2018 29 40 + 0.797101 0.00905 0.268 GATACAAGATCG Rv0691c_pal_1 1662_up_of_Rv2018 29 40 - 0.797101 0.00905 0.268 CGATCTTGTATC Rv0081_pal_1 sense_Rv1461_475_from_start 5 20 + -0.8 0.00905 0.45 TCAGAGAGGATCTGGA Rv0081_pal_1 antisense_Rv1461_472_from_start 18 33 + -0.8 0.00905 0.45 TCCAGATCCTCTCTGA Rv0081_pal_1 sense_Rv1461_475_from_start 5 20 - -0.8 0.00905 0.45 TCCAGATCCTCTCTGA Rv0081_pal_1 antisense_Rv1461_472_from_start 18 33 - -0.8 0.00905 0.45 TCAGAGAGGATCTGGA Rv0472c_nonpal_1 sense_Rv2038c_183_from_start 20 30 + -6.40385 0.00905 0.266 TATCCGGATCG Rv2887_pal_1 sense_pyrC_548_to_stop 11 25 + -0.8 0.00905 0.382 GACCAGGGTATTTCG Rv2887_pal_1 antisense_pyrC_541_to_stop 23 37 + -0.8 0.00905 0.382 CGAAATACCCTGGTC Rv2887_pal_1 sense_pyrC_548_to_stop 11 25 - -0.8 0.00905 0.382 CGAAATACCCTGGTC Rv2887_pal_1 antisense_pyrC_541_to_stop 23 37 - -0.8 0.00905 0.382 GACCAGGGTATTTCG Rv2359_nonpal_1 antisense_cobK_311_from_start 9 36 + -26.25 0.00906 0.303 ATGATGGCGGTACCGGGATCCCACGGCG Rv2359_nonpal_1 sense_cobK_304_from_start 12 39 - -26.25 0.00906 0.303 ATGATGGCGGTACCGGGATCCCACGGCG Rv2989_nonpal_2 sense_pks6_423_from_start 3 17 - -6.22989 0.00906 1 GCTGTTATCGCACAC Rv2989_nonpal_2 sense_pks6_424_from_start 3 17 - -6.22989 0.00906 1 GCTGTTATCGCACAC Rv2989_nonpal_2 sense_bioB_253_to_stop 10 24 + -6.22989 0.00906 1 GCCGACCTGGAGGTA Rv1556_nonpal_1 sense_Rv0674_10_to_stop 17 33 + -9.61702 0.00907 0.72 TGGAGGTGACATGAGTG Rv2359_nonpal_1 sense_PPE24_1577_to_stop 1 28 - -26.2596 0.00907 0.303 ATTGTGATACCCGCGGGTATCGTCAGCT Rv2359_nonpal_1 sense_PPE24_1352_to_stop 1 28 - -26.2596 0.00907 0.303 ATTGTGATACCCGCGGGTATCGTCAGCT Rv2359_nonpal_1 sense_PPE24_1277_to_stop 1 28 - -26.2596 0.00907 0.303 ATTGTGATACCCGCGGGTATCGTCAGCT Rv2034_nonpal_1 antisense_fadE7_121_to_stop 2 12 + 2.60294 0.00907 0.363 CGGATGACCGG Rv2034_nonpal_1 sense_fadE7_118_to_stop 26 36 - 2.60294 0.00907 0.363 CGGATGACCGG Rv2034_nonpal_1 sense_Rv0674_10_to_stop 28 38 - 2.60294 0.00907 0.363 CAGATCACTCA Rv1404_nonpal_1 antisense_Rv1461_559_from_start 4 29 + -2.1375 0.00907 0.115 TATTATCGCCGGCAGGGATTACTGTA Rv0678_nonpal_1 5188_up_of_Rv3186 5 19 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 9760_down_of_Rv3190c 5 19 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 6723_up_of_Rv3188 5 19 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 42_up_of_Rv3179 5 19 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 1681_down_of_Rv3180c 5 19 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 5182_up_of_Rv3186 11 25 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 1675_down_of_Rv3180c 11 25 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 9754_down_of_Rv3190c 11 25 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 36_up_of_Rv3179 11 25 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 6717_up_of_Rv3188 11 25 - 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 9761_down_of_Rv3190c 23 37 + 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 6724_up_of_Rv3188 23 37 + 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 43_up_of_Rv3179 23 37 + 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 5189_up_of_Rv3186 23 37 + 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv0678_nonpal_1 1682_down_of_Rv3180c 23 37 + 2.53125 0.00907 0.321 AGTATACAAGGAGTC Rv1423_nonpal_2 sense_bioB_253_to_stop 15 34 + -26 0.00908 1 CCTGGAGGTAATGCCGGTCG Rv3830c_pal_1 antisense_mmpL4_1187_to_stop 3 18 + -0.116883 0.00908 1 GCTTCGAATTGGTCTC Rv3830c_pal_1 antisense_mmpL4_1187_to_stop 3 18 - -0.116883 0.00908 1 GAGACCAATTCGAAGC Rv3830c_pal_1 sense_mmpL4_1184_to_stop 20 35 + -0.116883 0.00908 1 GAGACCAATTCGAAGC Rv3830c_pal_1 sense_mmpL4_1184_to_stop 20 35 - -0.116883 0.00908 1 GCTTCGAATTGGTCTC Rv1776c_nonpal_1 sense_fadE7_118_to_stop 2 7 - 0.273973 0.00908 0.802 GTTGCC Rv1776c_nonpal_1 antisense_fadE7_121_to_stop 31 36 + 0.273973 0.00908 0.802 GTTGCC Rv2642_pal_1 sense_rocA_797_to_stop 5 25 + -1.66667 0.00908 1 TGGCAGTGGGTGGGTACCAAT Rv2642_pal_1 sense_rocA_797_to_stop 5 25 - -1.66667 0.00908 1 ATTGGTACCCACCCACTGCCA Rv1674c_nonpal_1 4_up_of_Rv1049 4 21 - -11.5851 0.00909 0.391 CTCCAGACTCGTGTAGCT Rv1674c_nonpal_1 7_up_of_Rv1049 17 34 + -11.5851 0.00909 0.391 CTCCAGACTCGTGTAGCT Rv1473A_pal_1 9760_down_of_Rv3190c 6 17 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 1681_down_of_Rv3180c 6 17 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 42_up_of_Rv3179 6 17 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 6723_up_of_Rv3188 6 17 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 5188_up_of_Rv3186 6 17 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 9754_down_of_Rv3190c 12 23 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 1675_down_of_Rv3180c 12 23 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 6717_up_of_Rv3188 12 23 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 36_up_of_Rv3179 12 23 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 5182_up_of_Rv3186 12 23 + -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 42_up_of_Rv3179 6 17 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 6723_up_of_Rv3188 6 17 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 5188_up_of_Rv3186 6 17 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 9760_down_of_Rv3190c 6 17 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 1681_down_of_Rv3180c 6 17 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 9754_down_of_Rv3190c 12 23 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 36_up_of_Rv3179 12 23 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 6717_up_of_Rv3188 12 23 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 1675_down_of_Rv3180c 12 23 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 5182_up_of_Rv3186 12 23 - -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 43_up_of_Rv3179 25 36 + -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 6724_up_of_Rv3188 25 36 + -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 5189_up_of_Rv3186 25 36 + -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 9761_down_of_Rv3190c 25 36 + -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 1682_down_of_Rv3180c 25 36 + -0.0142857 0.0091 0.514 TATACAAGGAGT Rv1473A_pal_1 6724_up_of_Rv3188 25 36 - -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 5189_up_of_Rv3186 25 36 - -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 9761_down_of_Rv3190c 25 36 - -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 43_up_of_Rv3179 25 36 - -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv1473A_pal_1 1682_down_of_Rv3180c 25 36 - -0.0142857 0.0091 0.514 ACTCCTTGTATA Rv2788_nonpal_2 sense_Rv0674_10_to_stop 8 35 - -27.0116 0.0091 0.552 ATCACTCATGTCACCTCCAGGAGTTGAG Rv1404_nonpal_1 1662_up_of_Rv2018 1 26 - -2.15 0.0091 0.115 TTTCACTGGAGAAGGCCGATTCATAG Rv1404_nonpal_1 1662_up_of_Rv2018 15 40 - -2.15 0.0091 0.115 CGATCTTGTATCAATTTCACTGGAGA Rv0302_nonpal_2 sense_Rv1278_1158_to_stop 7 17 - -3.41026 0.0091 1 AGCCGCCAGCG Rv0047c_pal_1 sense_Rv1461_475_from_start 29 40 + 2.89394 0.00911 0.446 GAGTCATATTTT Rv0047c_pal_1 sense_Rv1461_475_from_start 29 40 - 2.89394 0.00911 0.446 AAAATATGACTC Rv2642_nonpal_1 sense_PPE24_1577_to_stop 4 28 - -7.18605 0.00911 0.27 ATTGTGATACCCGCGGGTATCGTCA Rv2642_nonpal_1 sense_PPE24_1352_to_stop 4 28 - -7.18605 0.00911 0.27 ATTGTGATACCCGCGGGTATCGTCA Rv2642_nonpal_1 sense_PPE24_1277_to_stop 4 28 - -7.18605 0.00911 0.27 ATTGTGATACCCGCGGGTATCGTCA Rv1049_nonpal_2 sense_mptA_23_from_start 16 30 - -1.74667 0.00912 0.691 AATCAACCGCTGGAG Rv1049_nonpal_2 37_up_of_Rv2172c 16 30 - -1.74667 0.00912 0.691 AATCAACCGCTGGAG Rv1556_pal_1 93_up_of_lpqG 16 31 + -2.8 0.00912 0.368 CGTCGATGCCAGTACC Rv1556_pal_1 93_up_of_lpqG 16 31 - -2.8 0.00912 0.368 GGTACTGGCATCGACG Rv3249c_nonpal_2 sense_gca_460_from_start 7 21 + -0.226667 0.00912 0.707 GACATGCTGGCGTAT Rv2324_nonpal_1 1662_up_of_Rv2018 20 38 + 2.43478 0.00912 0.364 AGTGAAATTGATACAAGAT Rv2011c_pal_1 antisense_aldA_642_from_start 15 29 + 2.80556 0.00913 0.851 TGCTGGAGGTGACGA Rv2011c_pal_1 antisense_aldA_642_from_start 15 29 - 2.80556 0.00913 0.851 TCGTCACCTCCAGCA Rv2506_pal_1 antisense_frdA_787_from_start 11 26 - -3.35789 0.00913 0.419 CTACCTCCAGGATTAC Rv0081_nonpal_1 sense_pks9_325_to_stop 4 18 + -3.37333 0.00913 0.509 CTACGCAATCGTCTC Rv0494_nonpal_2 antisense_Rv3282_217_to_stop 7 21 - -10.8947 0.00914 1 TGGAGGCTTACCTGG Rv0494_nonpal_2 447_down_of_accE5 7 21 - -10.8947 0.00914 1 TGGAGGCTTACCTGG Rv3249c_pal_1 sense_pks6_424_from_start 9 20 + 3.13846 0.00914 0.329 GATAACAGCGTA Rv3249c_pal_1 sense_pks6_423_from_start 9 20 + 3.13846 0.00914 0.329 GATAACAGCGTA Rv3249c_pal_1 5189_up_of_Rv3186 13 24 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 9761_down_of_Rv3190c 13 24 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 1682_down_of_Rv3180c 13 24 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 43_up_of_Rv3179 13 24 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 6724_up_of_Rv3188 13 24 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 5188_up_of_Rv3186 18 29 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 9760_down_of_Rv3190c 18 29 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 6723_up_of_Rv3188 18 29 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 42_up_of_Rv3179 18 29 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 1681_down_of_Rv3180c 18 29 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 9767_down_of_Rv3190c 19 30 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 1688_down_of_Rv3180c 19 30 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 49_up_of_Rv3179 19 30 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 6730_up_of_Rv3188 19 30 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 5195_up_of_Rv3186 19 30 + 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 sense_pks6_424_from_start 9 20 - 3.13846 0.00914 0.329 TACGCTGTTATC Rv3249c_pal_1 sense_pks6_423_from_start 9 20 - 3.13846 0.00914 0.329 TACGCTGTTATC Rv3249c_pal_1 9761_down_of_Rv3190c 13 24 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 1675_down_of_Rv3180c 24 35 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 5182_up_of_Rv3186 24 35 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 9754_down_of_Rv3190c 24 35 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 1682_down_of_Rv3180c 13 24 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 43_up_of_Rv3179 13 24 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 6724_up_of_Rv3188 13 24 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 6717_up_of_Rv3188 24 35 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 36_up_of_Rv3179 24 35 + 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 5189_up_of_Rv3186 13 24 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 antisense_pks6_431_from_start 28 39 + 3.13846 0.00914 0.329 TACGCTGTTATC Rv3249c_pal_1 antisense_pks6_430_from_start 28 39 + 3.13846 0.00914 0.329 TACGCTGTTATC Rv3249c_pal_1 5188_up_of_Rv3186 18 29 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 9760_down_of_Rv3190c 18 29 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 1681_down_of_Rv3180c 18 29 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 6723_up_of_Rv3188 18 29 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 42_up_of_Rv3179 18 29 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 1688_down_of_Rv3180c 19 30 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 9767_down_of_Rv3190c 19 30 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 49_up_of_Rv3179 19 30 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 6730_up_of_Rv3188 19 30 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 5195_up_of_Rv3186 19 30 - 3.13846 0.00914 0.329 CTGATCGGTGTA Rv3249c_pal_1 5182_up_of_Rv3186 24 35 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 9754_down_of_Rv3190c 24 35 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 6717_up_of_Rv3188 24 35 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 36_up_of_Rv3179 24 35 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 1675_down_of_Rv3180c 24 35 - 3.13846 0.00914 0.329 TACACCGATCAG Rv3249c_pal_1 antisense_pks6_431_from_start 28 39 - 3.13846 0.00914 0.329 GATAACAGCGTA Rv3249c_pal_1 antisense_pks6_430_from_start 28 39 - 3.13846 0.00914 0.329 GATAACAGCGTA Rv1219c_nonpal_2 antisense_Rv1461_559_from_start 5 32 + -47.6325 0.00914 0.672 ATTATCGCCGGCAGGGATTACTGTACCG Rv0195_nonpal_1 7_up_of_Rv1049 2 15 + -4.30851 0.00914 1 CCCCTTTGCCCATT Rv0195_nonpal_1 4_up_of_Rv1049 23 36 - -4.30851 0.00914 1 CCCCTTTGCCCATT Rv0117_nonpal_1 antisense_mmpL4_1187_to_stop 1 27 - -19.5577 0.00914 0.557 TGATTTCTGGAGACCAATTCGAAGCTA Rv0117_nonpal_1 sense_mmpL4_1184_to_stop 11 37 + -19.5577 0.00914 0.557 TGATTTCTGGAGACCAATTCGAAGCTA Rv0472c_nonpal_1 antisense_Rv1461_416_from_start 21 31 - -6.45192 0.00915 0.266 GATTAGTAGCT Rv2989_nonpal_2 sense_Rv0674_10_to_stop 18 32 + -6.27586 0.00915 1 GGAGGTGACATGAGT Rv3557c_nonpal_1 880_up_of_treZ 5 24 + -19.5962 0.00916 0.341 ACTGAAACGGGCTGGAGGCC Rv3557c_nonpal_1 antisense_treZ_470_to_stop 5 24 + -19.5962 0.00916 0.341 ACTGAAACGGGCTGGAGGCC Rv3557c_nonpal_1 antisense_treY_785_to_stop 5 24 + -19.5962 0.00916 0.341 ACTGAAACGGGCTGGAGGCC Rv3557c_nonpal_1 877_up_of_treZ 14 33 - -19.5962 0.00916 0.341 ACTGAAACGGGCTGGAGGCC Rv3557c_nonpal_1 sense_treZ_467_to_stop 14 33 - -19.5962 0.00916 0.341 ACTGAAACGGGCTGGAGGCC Rv0135c_nonpal_1 93_up_of_lpqG 23 33 - -3.03125 0.00916 0.528 GGGGTACTGGC Rv2506_pal_1 antisense_frdA_787_from_start 11 26 + -3.36842 0.00916 0.419 GTAATCCTGGAGGTAG Rv1556_nonpal_1 antisense_rocA_790_to_stop 16 32 + -9.67021 0.00916 0.72 GGCCGATATTGGTACCC Rv1556_nonpal_1 sense_rocA_797_to_stop 16 32 - -9.67021 0.00916 0.72 GGCCGATATTGGTACCC Rv1956_nonpal_1 sense_Rv0674_10_to_stop 18 38 - -3.53488 0.00916 0.329 CAGATCACTCATGTCACCTCC Rv0273c_pal_1 sense_Rv1461_552_from_start 3 18 + -1.45 0.00916 0.471 TCAAGGAATATTTCGG Rv0273c_pal_1 sense_Rv1461_552_from_start 3 18 - -1.45 0.00916 0.471 CCGAAATATTCCTTGA Rv0324_nonpal_1 sense_bioB_253_to_stop 9 16 + -4.07353 0.00917 0.473 CGCCGACC Rv2887_nonpal_1 antisense_aldA_642_from_start 20 34 + -3.5625 0.00917 0.519 GAGGTGACGATGTTG Rv0880_nonpal_1 sense_Rv2279_300_to_stop 8 31 + -11.7263 0.00917 0.211 ATACGGATAGGGGATCTCAGTACA Rv0880_nonpal_1 antisense_Rv2279_293_to_stop 17 40 - -11.7263 0.00917 0.211 ATACGGATAGGGGATCTCAGTACA Rv0981_nonpal_1 antisense_Rv1251c_1309_from_start 10 37 - -21.4528 0.00917 0.517 GTTCAGCTTGAAGGCGCTGGAGCCGCTG Rv2021c_pal_1 sense_Rv1278_1158_to_stop 24 38 + 2.82759 0.00918 0.859 GTCGCTGACCTAGCC Rv2021c_pal_1 sense_Rv1278_1158_to_stop 24 38 - 2.82759 0.00918 0.859 GGCTAGGTCAGCGAC Rv3765c_nonpal_1 93_up_of_lpqG 4 23 - -12.1579 0.00918 0.654 CATCGACGGGCCCTACAATG Rv2011c_pal_1 sense_bioB_253_to_stop 20 34 + 2.79167 0.00918 0.851 AGGTAATGCCGGTCG Rv2011c_pal_1 sense_bioB_253_to_stop 20 34 - 2.79167 0.00918 0.851 CGACCGGCATTACCT Rv1994c_nonpal_1 7_up_of_Rv1049 9 23 + 1.30137 0.00919 0.306 GCCCATTACTCCAGA Rv1994c_nonpal_1 1662_up_of_Rv2018 13 27 + 1.30137 0.00919 0.306 CTTCTCCAGTGAAAT Rv1994c_nonpal_1 4_up_of_Rv1049 15 29 - 1.30137 0.00919 0.306 GCCCATTACTCCAGA Rv2887_nonpal_1 antisense_Rv3282_217_to_stop 18 32 + -3.575 0.0092 0.519 TCCAGATCGGAGGCC Rv2887_nonpal_1 447_down_of_accE5 18 32 + -3.575 0.0092 0.519 TCCAGATCGGAGGCC Rv2324_nonpal_2 sense_pyrC_548_to_stop 18 32 + -2.74699 0.00921 0.72 GTATTTCGATCACCG Rv2324_nonpal_2 antisense_pyrC_541_to_stop 16 30 - -2.74699 0.00921 0.72 GTATTTCGATCACCG Rv1990c_nonpal_1 sense_bioB_253_to_stop 9 19 + 2.06154 0.00921 1 CGCCGACCTGG Rv1423_nonpal_2 antisense_frdA_787_from_start 19 38 + -26.0957 0.00922 1 GGAGGTAGCGGTAGCCGTCT Rv1219c_nonpal_1 4999_down_of_Rv3180c 8 22 + -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 8506_up_of_Rv3186 8 22 + -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 13078_down_of_Rv3190c 8 22 + -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 3360_up_of_Rv3179 8 22 + -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 10041_up_of_Rv3188 8 22 + -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 4992_down_of_Rv3180c 26 40 - -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 8499_up_of_Rv3186 26 40 - -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 3353_up_of_Rv3179 26 40 - -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 13071_down_of_Rv3190c 26 40 - -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1219c_nonpal_1 10034_up_of_Rv3188 26 40 - -2.49367 0.00923 0.599 AAAGCACAAAGTACA Rv1353c_nonpal_1 antisense_aldA_642_from_start 7 21 + 2.51515 0.00923 0.324 AGCGTGACTGCTGGA Rv0757_pal_1 sense_pks9_325_to_stop 19 32 + 1.96203 0.00923 0.719 CAGATGGCTATCGG Rv0757_pal_1 sense_pks9_325_to_stop 19 32 - 1.96203 0.00923 0.719 CCGATAGCCATCTG Rv0273c_nonpal_1 7_up_of_Rv1049 11 35 + 0.175 0.00923 1 CCATTACTCCAGACTCGTGTAGCTA Rv0273c_nonpal_1 4_up_of_Rv1049 3 27 - 0.175 0.00923 1 CCATTACTCCAGACTCGTGTAGCTA Rv2989_nonpal_2 antisense_accA1_595_from_start 14 28 - -6.32184 0.00923 1 GCTATTCCTGGAGCG Rv2989_nonpal_2 sense_accA1_598_from_start 10 24 + -6.32184 0.00923 1 GCTATTCCTGGAGCG Rv2324_nonpal_1 6724_up_of_Rv3188 11 29 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 5189_up_of_Rv3186 11 29 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 1682_down_of_Rv3180c 11 29 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 43_up_of_Rv3179 11 29 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 9761_down_of_Rv3190c 11 29 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 6730_up_of_Rv3188 17 35 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 5195_up_of_Rv3186 17 35 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 49_up_of_Rv3179 17 35 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 1688_down_of_Rv3180c 17 35 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 9767_down_of_Rv3190c 17 35 + 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 6723_up_of_Rv3188 13 31 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 5188_up_of_Rv3186 13 31 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 1681_down_of_Rv3180c 13 31 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 9760_down_of_Rv3190c 13 31 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 42_up_of_Rv3179 13 31 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 9754_down_of_Rv3190c 19 37 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 6717_up_of_Rv3188 19 37 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 36_up_of_Rv3179 19 37 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 1675_down_of_Rv3180c 19 37 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv2324_nonpal_1 5182_up_of_Rv3186 19 37 - 2.4058 0.00924 0.364 AGTACACCGATCAGTATAC Rv0818_nonpal_1 antisense_PPE34_1661_from_start 6 26 - -8.38298 0.00924 0.53 ATTCCCTCCAGATTACGTGAC Rv0818_nonpal_1 sense_PPE34_3066_to_stop 12 32 + -8.38298 0.00924 0.53 ATTCCCTCCAGATTACGTGAC Rv0818_nonpal_1 sense_PPE34_1664_from_start 12 32 + -8.38298 0.00924 0.53 ATTCCCTCCAGATTACGTGAC Rv0818_nonpal_1 sense_PPE34_1439_from_start 12 32 + -8.38298 0.00924 0.53 ATTCCCTCCAGATTACGTGAC Rv3574_pal_1 antisense_PPE24_1570_to_stop 11 26 + 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv3574_pal_1 antisense_PPE24_1345_to_stop 11 26 + 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv3574_pal_1 antisense_PPE24_1270_to_stop 11 26 + 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv3574_pal_1 sense_PPE24_1577_to_stop 22 37 + 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 sense_PPE24_1352_to_stop 22 37 + 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 sense_PPE24_1277_to_stop 22 37 + 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 antisense_PPE24_1270_to_stop 11 26 - 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 antisense_PPE24_1570_to_stop 11 26 - 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 antisense_PPE24_1345_to_stop 11 26 - 0.637681 0.00924 0.289 TCACAATCGGTGGCTT Rv3574_pal_1 sense_PPE24_1277_to_stop 22 37 - 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv3574_pal_1 sense_PPE24_1577_to_stop 22 37 - 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv3574_pal_1 sense_PPE24_1352_to_stop 22 37 - 0.637681 0.00924 0.289 AAGCCACCGATTGTGA Rv0757_nonpal_1 4999_down_of_Rv3180c 19 39 + -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 10041_up_of_Rv3188 19 39 + -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 8506_up_of_Rv3186 19 39 + -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 3360_up_of_Rv3179 19 39 + -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 13078_down_of_Rv3190c 19 39 + -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 3353_up_of_Rv3179 9 29 - -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 4992_down_of_Rv3180c 9 29 - -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 13071_down_of_Rv3190c 9 29 - -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 10034_up_of_Rv3188 9 29 - -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0757_nonpal_1 8499_up_of_Rv3186 9 29 - -3.12658 0.00924 0.595 TACACCAATCGGTTTACTGTA Rv0135c_pal_1 antisense_PPE34_1661_from_start 8 17 + -0.15625 0.00924 0.313 CACGTAATCT Rv0135c_pal_1 antisense_PPE34_1661_from_start 8 17 - -0.15625 0.00924 0.313 AGATTACGTG Rv0135c_pal_1 sense_PPE34_1439_from_start 21 30 + -0.15625 0.00924 0.313 AGATTACGTG Rv0135c_pal_1 sense_PPE34_3066_to_stop 21 30 + -0.15625 0.00924 0.313 AGATTACGTG Rv0135c_pal_1 sense_PPE34_1664_from_start 21 30 + -0.15625 0.00924 0.313 AGATTACGTG Rv0135c_pal_1 sense_PPE34_1664_from_start 21 30 - -0.15625 0.00924 0.313 CACGTAATCT Rv0135c_pal_1 sense_PPE34_3066_to_stop 21 30 - -0.15625 0.00924 0.313 CACGTAATCT Rv0135c_pal_1 sense_PPE34_1439_from_start 21 30 - -0.15625 0.00924 0.313 CACGTAATCT Rv2359_nonpal_1 antisense_mmpL4_1187_to_stop 1 28 + -26.375 0.00924 0.303 TAGCTTCGAATTGGTCTCCAGAAATCAT Rv2359_nonpal_1 sense_mmpL4_1184_to_stop 10 37 - -26.375 0.00924 0.303 TAGCTTCGAATTGGTCTCCAGAAATCAT Rv1994c_pal_1 8506_up_of_Rv3186 17 31 + 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 8499_up_of_Rv3186 17 31 + 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 3360_up_of_Rv3179 17 31 + 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 13071_down_of_Rv3190c 17 31 + 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 10034_up_of_Rv3188 17 31 + 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 3353_up_of_Rv3179 17 31 + 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 13078_down_of_Rv3190c 17 31 + 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 4999_down_of_Rv3180c 17 31 + 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 10041_up_of_Rv3188 17 31 + 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 4992_down_of_Rv3180c 17 31 + 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 8506_up_of_Rv3186 17 31 - 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 8499_up_of_Rv3186 17 31 - 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 3360_up_of_Rv3179 17 31 - 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 3353_up_of_Rv3179 17 31 - 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 13078_down_of_Rv3190c 17 31 - 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 4999_down_of_Rv3180c 17 31 - 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 4992_down_of_Rv3180c 17 31 - 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 13071_down_of_Rv3190c 17 31 - 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv1994c_pal_1 10041_up_of_Rv3188 17 31 - 1.2973 0.00925 0.188 ACCGATTGGTGTACT Rv1994c_pal_1 10034_up_of_Rv3188 17 31 - 1.2973 0.00925 0.188 AGTACACCAATCGGT Rv3574_nonpal_2 antisense_Rv1461_472_from_start 12 39 - -44.4188 0.00925 0.482 ACCAGATCAGAGAGGATCTGGAGGCTCA Rv2011c_nonpal_1 antisense_frdA_787_from_start 4 22 - 2.32857 0.00925 0.856 CTCCAGGATTACGACCTCG Rv1049_nonpal_2 antisense_aldA_642_from_start 23 37 - -1.81333 0.00925 0.691 TGTCAACATCGTCAC Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 20 38 + -3.13924 0.00926 0.277 AGCGATATCCCGTTGCCGC Rv2887_nonpal_1 antisense_Rv2279_293_to_stop 2 16 + -3.6 0.00926 0.519 TGAACCGGATCGATG Rv3681c_nonpal_1 sense_Rv1461_552_from_start 1 20 + -3.56962 0.00926 0.471 TTTCAAGGAATATTTCGGTA Rv3246c_pal_1 antisense_Rv2963_530_to_stop 9 24 + 1.45122 0.00926 0.178 TCTGCCAGAACGATTC Rv3246c_pal_1 sense_Rv2963_537_to_stop 24 39 + 1.45122 0.00926 0.178 GAATCGTTCTGGCAGA Rv3246c_pal_1 antisense_Rv2963_530_to_stop 9 24 - 1.45122 0.00926 0.178 GAATCGTTCTGGCAGA Rv3246c_pal_1 sense_Rv2963_537_to_stop 24 39 - 1.45122 0.00926 0.178 TCTGCCAGAACGATTC Rv0494_pal_1 antisense_Rv3282_217_to_stop 1 17 + 1.32143 0.00927 1 CACTGGCCAGGTAAGCC Rv0494_pal_1 447_down_of_accE5 1 17 + 1.32143 0.00927 1 CACTGGCCAGGTAAGCC Rv0494_pal_1 447_down_of_accE5 1 17 - 1.32143 0.00927 1 GGCTTACCTGGCCAGTG Rv0494_pal_1 antisense_Rv3282_217_to_stop 1 17 - 1.32143 0.00927 1 GGCTTACCTGGCCAGTG Rv2989_nonpal_1 antisense_Rv2279_293_to_stop 7 27 + -4.44737 0.00927 0.671 CGGATCGATGTGTACTGAGAT Rv3488_pal_1 1662_up_of_Rv2018 22 29 + -4.14706 0.00927 0.361 TGAAATTG Rv3488_pal_1 1662_up_of_Rv2018 22 29 - -4.14706 0.00927 0.361 CAATTTCA Rv3488_nonpal_1 sense_Rv2279_300_to_stop 19 32 - -7.01471 0.00927 0.463 GTGTACTGAGATCC Rv3488_nonpal_1 antisense_Rv2279_293_to_stop 16 29 + -7.01471 0.00927 0.463 GTGTACTGAGATCC Rv0339c_nonpal_2 antisense_cobK_311_from_start 6 26 + -15.7885 0.00928 0.774 GCGATGATGGCGGTACCGGGA Rv2989_nonpal_2 sense_pks9_325_to_stop 16 30 - -6.34483 0.00928 1 GATAGCCATCTGGAG Rv0576_nonpal_1 3360_up_of_Rv3179 2 27 + -2.61364 0.00928 0.161 ACCGTCAAAGCACAAAGTACACCAAT Rv0576_nonpal_1 8506_up_of_Rv3186 2 27 + -2.61364 0.00928 0.161 ACCGTCAAAGCACAAAGTACACCAAT Rv0576_nonpal_1 4999_down_of_Rv3180c 2 27 + -2.61364 0.00928 0.161 ACCGTCAAAGCACAAAGTACACCAAT Rv0576_nonpal_1 13078_down_of_Rv3190c 2 27 + -2.61364 0.00928 0.161 ACCGTCAAAGCACAAAGTACACCAAT Rv0576_nonpal_1 10041_up_of_Rv3188 2 27 + -2.61364 0.00928 0.161 ACCGTCAAAGCACAAAGTACACCAAT Rv3246c_nonpal_1 sense_pks9_325_to_stop 13 32 - -2.06173 0.00928 0.384 CCGATAGCCATCTGGAGACG Rv1353c_nonpal_1 10_up_of_Rv1866 15 29 + 2.5 0.00928 0.324 GCTGGAGGCACCGAT Rv0653c_nonpal_1 antisense_metA_391_from_start 13 31 + -3.1519 0.00929 0.277 GGTCACGTATCGAGATCAG Rv0653c_nonpal_1 sense_metA_384_from_start 17 35 - -3.1519 0.00929 0.277 GGTCACGTATCGAGATCAG Rv1404_pal_1 antisense_accA1_595_from_start 2 14 + 2.075 0.00929 0.237 CGCAACACAAACC Rv1404_pal_1 antisense_accA1_595_from_start 2 14 - 2.075 0.00929 0.237 GGTTTGTGTTGCG Rv1404_pal_1 sense_accA1_598_from_start 24 36 + 2.075 0.00929 0.237 GGTTTGTGTTGCG Rv1404_pal_1 sense_accA1_598_from_start 24 36 - 2.075 0.00929 0.237 CGCAACACAAACC Rv0981_nonpal_2 4999_down_of_Rv3180c 15 35 + -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 8506_up_of_Rv3186 15 35 + -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 10041_up_of_Rv3188 15 35 + -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 13078_down_of_Rv3190c 15 35 + -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 3360_up_of_Rv3179 15 35 + -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 3353_up_of_Rv3179 13 33 - -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 4992_down_of_Rv3180c 13 33 - -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 13071_down_of_Rv3190c 13 33 - -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 8499_up_of_Rv3186 13 33 - -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv0981_nonpal_2 10034_up_of_Rv3188 13 33 - -6.66316 0.0093 0.491 AAAGTACACCAATCGGTTTAC Rv2359_pal_1 antisense_aldA_642_from_start 18 38 + -17.8762 0.0093 0.173 TGGAGGTGACGATGTTGACAA Rv2359_pal_1 antisense_aldA_642_from_start 18 38 - -17.8762 0.0093 0.173 TTGTCAACATCGTCACCTCCA Rv1167c_nonpal_1 sense_Rv0674_10_to_stop 25 39 + -8.38462 0.00931 0.956 ACATGAGTGATCTGG Rv2506_nonpal_1 sense_pks9_325_to_stop 12 30 - -7.39362 0.00931 0.639 GATAGCCATCTGGAGACGA Rv2359_nonpal_1 antisense_pks6_430_from_start 2 29 - -26.4231 0.00932 0.303 TATCCAGATCGTGGGTTCACGAATGCTG Rv2359_nonpal_1 antisense_pks6_431_from_start 2 29 - -26.4231 0.00932 0.303 TATCCAGATCGTGGGTTCACGAATGCTG Rv1473A_nonpal_2 sense_Rv2038c_183_from_start 25 32 - -7.49315 0.00932 0.45 GCCGATCC Rv0757_nonpal_1 antisense_mmpL4_1187_to_stop 14 34 + -3.16456 0.00932 0.595 GTCTCCAGAAATCATCAAAAT Rv0757_nonpal_1 sense_mmpL4_1184_to_stop 4 24 - -3.16456 0.00932 0.595 GTCTCCAGAAATCATCAAAAT Rv1846c_nonpal_1 antisense_frdA_787_from_start 6 27 - -18.2553 0.00932 0.407 GCTACCTCCAGGATTACGACCT Rv2989_nonpal_2 sense_pyrC_548_to_stop 26 40 - -6.36782 0.00932 1 GACCTCGGCGGTGAT Rv2989_nonpal_2 antisense_pyrC_541_to_stop 8 22 + -6.36782 0.00932 1 GACCTCGGCGGTGAT Rv1255c_nonpal_1 8499_up_of_Rv3186 3 22 + -6.42529 0.00932 0.465 ACCTCCTACAGTAAACCGAT Rv1255c_nonpal_1 13071_down_of_Rv3190c 3 22 + -6.42529 0.00932 0.465 ACCTCCTACAGTAAACCGAT Rv1255c_nonpal_1 3353_up_of_Rv3179 3 22 + -6.42529 0.00932 0.465 ACCTCCTACAGTAAACCGAT Rv1255c_nonpal_1 10034_up_of_Rv3188 3 22 + -6.42529 0.00932 0.465 ACCTCCTACAGTAAACCGAT Rv1255c_nonpal_1 4992_down_of_Rv3180c 3 22 + -6.42529 0.00932 0.465 ACCTCCTACAGTAAACCGAT Rv2250c_nonpal_1 antisense_pyrC_541_to_stop 20 29 + 0.57971 0.00933 0.506 GATCGAAATA Rv2250c_nonpal_1 sense_pyrC_548_to_stop 19 28 - 0.57971 0.00933 0.506 GATCGAAATA Rv3849_nonpal_2 sense_pyrC_548_to_stop 6 33 - -19.7442 0.00934 1 GCGGTGATCGAAATACCCTGGTCCTTAG Rv3249c_pal_1 36_up_of_Rv3179 5 16 + 3.09231 0.00934 0.329 CACGCCGACTCC Rv3249c_pal_1 5182_up_of_Rv3186 5 16 + 3.09231 0.00934 0.329 CACGCCGACTCC Rv3249c_pal_1 9754_down_of_Rv3190c 5 16 + 3.09231 0.00934 0.329 CACGCCGACTCC Rv3249c_pal_1 1675_down_of_Rv3180c 5 16 + 3.09231 0.00934 0.329 CACGCCGACTCC Rv3249c_pal_1 6717_up_of_Rv3188 5 16 + 3.09231 0.00934 0.329 CACGCCGACTCC Rv3249c_pal_1 9754_down_of_Rv3190c 5 16 - 3.09231 0.00934 0.329 GGAGTCGGCGTG Rv3249c_pal_1 5182_up_of_Rv3186 5 16 - 3.09231 0.00934 0.329 GGAGTCGGCGTG Rv3249c_pal_1 6717_up_of_Rv3188 5 16 - 3.09231 0.00934 0.329 GGAGTCGGCGTG Rv3249c_pal_1 36_up_of_Rv3179 5 16 - 3.09231 0.00934 0.329 GGAGTCGGCGTG Rv3249c_pal_1 1675_down_of_Rv3180c 5 16 - 3.09231 0.00934 0.329 GGAGTCGGCGTG Rv0302_nonpal_2 antisense_rocA_790_to_stop 9 19 - -3.48718 0.00934 1 GGCCGCTACCA Rv0302_nonpal_2 sense_rocA_797_to_stop 29 39 + -3.48718 0.00934 1 GGCCGCTACCA Rv2374c_nonpal_1 37_up_of_Rv2172c 7 34 + -15.1154 0.00934 0.553 CGAGCCATGCTCCAGCGGTTGATTTGGC Rv2374c_nonpal_1 sense_mptA_23_from_start 7 34 + -15.1154 0.00934 0.553 CGAGCCATGCTCCAGCGGTTGATTTGGC Rv1816_nonpal_2 sense_Rv2038c_183_from_start 6 33 + -47.9038 0.00934 0.788 CTGGACTGTGGGCGTATCCGGATCGGCG Rv1255c_nonpal_1 sense_gca_460_from_start 20 39 + -6.43678 0.00935 0.465 ATCAATATCACAAGTCTTAC Rv1255c_nonpal_1 antisense_gca_467_from_start 9 28 - -6.43678 0.00935 0.465 ATCAATATCACAAGTCTTAC Rv3736_nonpal_1 antisense_gca_467_from_start 14 28 + 1.7971 0.00935 0.626 ACTTGTGATATTGAT Rv3736_nonpal_1 sense_Rv2038c_183_from_start 18 32 + 1.7971 0.00935 0.626 CGTATCCGGATCGGC Rv3736_nonpal_1 sense_gca_460_from_start 20 34 - 1.7971 0.00935 0.626 ACTTGTGATATTGAT Rv1776c_nonpal_1 antisense_frdA_787_from_start 10 15 - -0.630137 0.00935 0.802 ATTACG Rv1776c_nonpal_1 antisense_PPE34_1661_from_start 10 15 - -0.630137 0.00935 0.802 ATTACG Rv1776c_nonpal_1 sense_PPE34_1439_from_start 23 28 + -0.630137 0.00935 0.802 ATTACG Rv1776c_nonpal_1 sense_PPE34_1664_from_start 23 28 + -0.630137 0.00935 0.802 ATTACG Rv1776c_nonpal_1 sense_PPE34_3066_to_stop 23 28 + -0.630137 0.00935 0.802 ATTACG Rv1404_nonpal_1 antisense_mmpL4_1187_to_stop 6 31 + -2.25 0.00936 0.116 TCGAATTGGTCTCCAGAAATCATCAA Rv1404_nonpal_1 sense_mmpL4_1184_to_stop 7 32 - -2.25 0.00936 0.116 TCGAATTGGTCTCCAGAAATCATCAA Rv1423_pal_1 sense_pks9_325_to_stop 29 40 + 2.28767 0.00936 1 TCGGTTTGCCCG Rv1423_pal_1 sense_pks9_325_to_stop 29 40 - 2.28767 0.00936 1 CGGGCAAACCGA Rv3488_pal_1 antisense_frdA_787_from_start 21 28 + -4.16176 0.00936 0.361 AGGTAGCG Rv3488_pal_1 antisense_frdA_787_from_start 21 28 - -4.16176 0.00936 0.361 CGCTACCT Rv0047c_nonpal_2 sense_bioB_253_to_stop 10 37 - -43.1282 0.00936 0.378 CACCGACCGGCATTACCTCCAGGTCGGC Rv1816_nonpal_2 sense_bioB_253_to_stop 9 36 - -47.9231 0.00937 0.788 ACCGACCGGCATTACCTCCAGGTCGGCG Rv0302_pal_1 antisense_frdA_787_from_start 5 16 + 2.99265 0.00937 0.453 GAGGTCGTAATC Rv0302_pal_1 antisense_frdA_787_from_start 5 16 - 2.99265 0.00937 0.453 GATTACGACCTC Rv2009_nonpal_1 sense_accA1_598_from_start 9 29 + -3.73418 0.00937 0.317 CGCTATTCCTGGAGCGGTTTG Rv2009_nonpal_1 antisense_accA1_595_from_start 9 29 - -3.73418 0.00937 0.317 CGCTATTCCTGGAGCGGTTTG Rv2034_pal_2 sense_Rv2279_300_to_stop 2 8 + -9.86076 0.00937 0.705 TCCACCA Rv2034_pal_2 sense_Rv1461_552_from_start 3 9 + -9.86076 0.00937 0.705 TCAAGGA Rv2034_pal_2 antisense_PPE24_1570_to_stop 4 10 + -9.86076 0.00937 0.705 TAGACTA Rv2034_pal_2 antisense_PPE24_1345_to_stop 4 10 + -9.86076 0.00937 0.705 TAGACTA Rv2034_pal_2 antisense_PPE24_1270_to_stop 4 10 + -9.86076 0.00937 0.705 TAGACTA Rv2034_pal_2 sense_mmpL4_1184_to_stop 7 13 + -9.86076 0.00937 0.705 TTGATGA Rv2034_pal_2 4_up_of_Rv1049 7 13 + -9.86076 0.00937 0.705 TACACGA Rv2034_pal_2 antisense_pks6_431_from_start 8 14 + -9.86076 0.00937 0.705 TCGTGAA Rv2034_pal_2 antisense_Rv1461_472_from_start 8 14 + -9.86076 0.00937 0.705 TCCTTGA Rv2034_pal_2 sense_Rv2279_300_to_stop 2 8 - -9.86076 0.00937 0.705 TGGTGGA Rv2034_pal_2 antisense_pks6_430_from_start 8 14 + -9.86076 0.00937 0.705 TCGTGAA Rv2034_pal_2 sense_Rv1461_552_from_start 3 9 - -9.86076 0.00937 0.705 TCCTTGA Rv2034_pal_2 antisense_PPE24_1570_to_stop 4 10 - -9.86076 0.00937 0.705 TAGTCTA Rv2034_pal_2 antisense_PPE24_1345_to_stop 4 10 - -9.86076 0.00937 0.705 TAGTCTA Rv2034_pal_2 antisense_PPE24_1270_to_stop 4 10 - -9.86076 0.00937 0.705 TAGTCTA Rv2034_pal_2 sense_mmpL4_1184_to_stop 7 13 - -9.86076 0.00937 0.705 TCATCAA Rv2034_pal_2 4_up_of_Rv1049 7 13 - -9.86076 0.00937 0.705 TCGTGTA Rv2034_pal_2 antisense_pks6_430_from_start 8 14 - -9.86076 0.00937 0.705 TTCACGA Rv2034_pal_2 antisense_Rv1461_472_from_start 8 14 - -9.86076 0.00937 0.705 TCAAGGA Rv2034_pal_2 sense_Rv0674_10_to_stop 14 20 + -9.86076 0.00937 0.705 TCCTGGA Rv2034_pal_2 antisense_pks6_431_from_start 8 14 - -9.86076 0.00937 0.705 TTCACGA Rv2034_pal_2 sense_accA1_598_from_start 15 21 + -9.86076 0.00937 0.705 TCCTGGA Rv2034_pal_2 antisense_frdA_787_from_start 15 21 + -9.86076 0.00937 0.705 TCCTGGA Rv2034_pal_2 antisense_accA1_595_from_start 17 23 + -9.86076 0.00937 0.705 TCCAGGA Rv2034_pal_2 antisense_pyrC_541_to_stop 19 25 + -9.86076 0.00937 0.705 TGATCGA Rv2034_pal_2 sense_Rv0674_10_to_stop 14 20 - -9.86076 0.00937 0.705 TCCAGGA Rv2034_pal_2 sense_accA1_598_from_start 15 21 - -9.86076 0.00937 0.705 TCCAGGA Rv2034_pal_2 antisense_frdA_787_from_start 15 21 - -9.86076 0.00937 0.705 TCCAGGA Rv2034_pal_2 antisense_accA1_595_from_start 17 23 - -9.86076 0.00937 0.705 TCCTGGA Rv2034_pal_2 sense_pyrC_548_to_stop 23 29 + -9.86076 0.00937 0.705 TCGATCA Rv2034_pal_2 sense_Rv1461_475_from_start 24 30 + -9.86076 0.00937 0.705 TCAAGGA Rv2034_pal_2 antisense_mmpL4_1187_to_stop 25 31 + -9.86076 0.00937 0.705 TCATCAA Rv2034_pal_2 7_up_of_Rv1049 25 31 + -9.86076 0.00937 0.705 TCGTGTA Rv2034_pal_2 antisense_pyrC_541_to_stop 19 25 - -9.86076 0.00937 0.705 TCGATCA Rv2034_pal_2 sense_pyrC_548_to_stop 23 29 - -9.86076 0.00937 0.705 TGATCGA Rv2034_pal_2 sense_Rv1461_475_from_start 24 30 - -9.86076 0.00937 0.705 TCCTTGA Rv2034_pal_2 antisense_mmpL4_1187_to_stop 25 31 - -9.86076 0.00937 0.705 TTGATGA Rv2034_pal_2 7_up_of_Rv1049 25 31 - -9.86076 0.00937 0.705 TACACGA Rv2034_pal_2 antisense_aldA_642_from_start 32 38 + -9.86076 0.00937 0.705 TTGACAA Rv2034_pal_2 antisense_Rv1251c_1309_from_start 33 39 + -9.86076 0.00937 0.705 TGAACGA Rv2034_pal_2 sense_pks6_423_from_start 34 40 + -9.86076 0.00937 0.705 TTCACGA Rv2034_pal_2 sense_pks6_424_from_start 34 40 + -9.86076 0.00937 0.705 TTCACGA Rv2034_pal_2 antisense_aldA_642_from_start 32 38 - -9.86076 0.00937 0.705 TTGTCAA Rv2034_pal_2 antisense_Rv1251c_1309_from_start 33 39 - -9.86076 0.00937 0.705 TCGTTCA Rv2034_pal_2 sense_pks6_424_from_start 34 40 - -9.86076 0.00937 0.705 TCGTGAA Rv2034_pal_2 sense_pks6_423_from_start 34 40 - -9.86076 0.00937 0.705 TCGTGAA Rv0767c_pal_1 sense_pyrC_548_to_stop 10 21 + 3.09901 0.00938 0.989 GGACCAGGGTAT Rv0767c_pal_1 sense_pyrC_548_to_stop 10 21 - 3.09901 0.00938 0.989 ATACCCTGGTCC Rv0767c_pal_1 antisense_pyrC_541_to_stop 27 38 + 3.09901 0.00938 0.989 ATACCCTGGTCC Rv0767c_pal_1 antisense_pyrC_541_to_stop 27 38 - 3.09901 0.00938 0.989 GGACCAGGGTAT Rv0023_pal_2 10_up_of_Rv1866 1 16 + 0.688312 0.00938 0.439 CCGACGGCTGTTCTGC Rv0023_pal_2 10_up_of_Rv1866 1 16 - 0.688312 0.00938 0.439 GCAGAACAGCCGTCGG Rv0691c_nonpal_1 sense_Rv2963_537_to_stop 16 29 - -3.5 0.00938 0.574 CGATTCGGGTACCC Rv0691c_nonpal_1 antisense_Rv2963_530_to_stop 19 32 + -3.5 0.00938 0.574 CGATTCGGGTACCC Rv0302_nonpal_1 sense_pyrC_548_to_stop 22 36 - 1.36232 0.00938 0.459 TCGGCGGTGATCGAA Rv0302_nonpal_1 antisense_pyrC_541_to_stop 12 26 + 1.36232 0.00938 0.459 TCGGCGGTGATCGAA Rv1255c_nonpal_1 sense_rocA_797_to_stop 3 22 - -6.45977 0.00939 0.465 GGTACCCACCCACTGCCATA Rv0880_nonpal_1 1662_up_of_Rv2018 8 31 - -11.8526 0.0094 0.214 ATCAATTTCACTGGAGAAGGCCGA Rv3830c_nonpal_2 sense_PPE24_1577_to_stop 14 40 + -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv3830c_nonpal_2 sense_PPE24_1352_to_stop 14 40 + -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv3830c_nonpal_2 sense_PPE24_1277_to_stop 14 40 + -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv3830c_nonpal_2 antisense_PPE24_1570_to_stop 8 34 - -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv3830c_nonpal_2 antisense_PPE24_1345_to_stop 8 34 - -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv3830c_nonpal_2 antisense_PPE24_1270_to_stop 8 34 - -27.625 0.0094 0.57 CGCGGGTATCACAATCGGTGGCTTTAG Rv2250c_pal_1 7_up_of_Rv1049 12 18 + -4.07353 0.0094 0.59 CATTACT Rv2250c_pal_1 7_up_of_Rv1049 12 18 - -4.07353 0.0094 0.59 AGTAATG Rv2250c_pal_1 4_up_of_Rv1049 20 26 + -4.07353 0.0094 0.59 AGTAATG Rv2250c_pal_1 4_up_of_Rv1049 20 26 - -4.07353 0.0094 0.59 CATTACT Rv3681c_pal_1 sense_accA1_598_from_start 6 19 + 1.39286 0.00941 0.51 ATACGCTATTCCTG Rv3681c_pal_1 sense_accA1_598_from_start 6 19 - 1.39286 0.00941 0.51 CAGGAATAGCGTAT Rv3681c_pal_1 antisense_accA1_595_from_start 19 32 + 1.39286 0.00941 0.51 CAGGAATAGCGTAT Rv3681c_pal_1 antisense_accA1_595_from_start 19 32 - 1.39286 0.00941 0.51 ATACGCTATTCCTG Rv0602c_pal_1 8499_up_of_Rv3186 9 16 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 4992_down_of_Rv3180c 9 16 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 13071_down_of_Rv3190c 9 16 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 3353_up_of_Rv3179 9 16 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 10034_up_of_Rv3188 9 16 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 10034_up_of_Rv3188 9 16 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 4992_down_of_Rv3180c 9 16 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 8499_up_of_Rv3186 9 16 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 13071_down_of_Rv3190c 9 16 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 3353_up_of_Rv3179 9 16 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 sense_Rv1461_552_from_start 19 26 + -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 antisense_Rv1461_559_from_start 22 29 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 sense_Rv1461_552_from_start 19 26 - -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 antisense_Rv1461_559_from_start 22 29 - -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 4999_down_of_Rv3180c 32 39 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 13078_down_of_Rv3190c 32 39 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 8506_up_of_Rv3186 32 39 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 3360_up_of_Rv3179 32 39 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 10041_up_of_Rv3188 32 39 + -3.65823 0.00941 0.182 TTACTGTA Rv0602c_pal_1 8506_up_of_Rv3186 32 39 - -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 4999_down_of_Rv3180c 32 39 - -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 3360_up_of_Rv3179 32 39 - -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 13078_down_of_Rv3190c 32 39 - -3.65823 0.00941 0.182 TACAGTAA Rv0602c_pal_1 10041_up_of_Rv3188 32 39 - -3.65823 0.00941 0.182 TACAGTAA Rv0022c_pal_1 antisense_Rv1461_416_from_start 3 24 + 0.027027 0.00941 0.19 GTATTGTGCGGCTACTCCAGCT Rv0022c_pal_1 antisense_Rv1461_416_from_start 3 24 - 0.027027 0.00941 0.19 AGCTGGAGTAGCCGCACAATAC Rv0472c_nonpal_1 antisense_metA_391_from_start 13 23 - -6.59615 0.00942 0.266 GATACGTGACC Rv0472c_nonpal_1 sense_metA_384_from_start 25 35 + -6.59615 0.00942 0.266 GATACGTGACC Rv0691c_nonpal_2 sense_Rv2038c_183_from_start 1 24 + -44.9519 0.00942 0.669 AGACGCTGGACTGTGGGCGTATCC Rv0273c_pal_1 4_up_of_Rv1049 10 25 + -1.5625 0.00942 0.471 ACGAGTCTGGAGTAAT Rv0273c_pal_1 7_up_of_Rv1049 13 28 + -1.5625 0.00942 0.471 ATTACTCCAGACTCGT Rv0273c_pal_1 4_up_of_Rv1049 10 25 - -1.5625 0.00942 0.471 ATTACTCCAGACTCGT Rv0273c_pal_1 7_up_of_Rv1049 13 28 - -1.5625 0.00942 0.471 ACGAGTCTGGAGTAAT Rv1828_pal_1 antisense_Rv1251c_1309_from_start 5 33 + -6.7766 0.00942 0.259 AGGTACAGCGGCTCCAGCGCCTTCAAGCT Rv1828_pal_1 antisense_Rv1251c_1309_from_start 5 33 - -6.7766 0.00942 0.259 AGCTTGAAGGCGCTGGAGCCGCTGTACCT Rv3849_nonpal_1 sense_Rv1278_1158_to_stop 1 12 + -4.67123 0.00942 0.739 CTGATGCGCTGG Rv1473A_nonpal_2 antisense_Rv1251c_1309_from_start 33 40 - -7.53425 0.00943 0.451 CTCGTTCA Rv1473A_nonpal_1 antisense_frdA_787_from_start 9 22 + -9.26027 0.00943 0.476 TCGTAATCCTGGAG Rv2788_pal_1 6724_up_of_Rv3188 3 24 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 43_up_of_Rv3179 3 24 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 1682_down_of_Rv3180c 3 24 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 5189_up_of_Rv3186 3 24 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 9761_down_of_Rv3190c 3 24 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 1688_down_of_Rv3180c 9 30 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 49_up_of_Rv3179 9 30 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 6730_up_of_Rv3188 9 30 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 5195_up_of_Rv3186 9 30 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 9767_down_of_Rv3190c 9 30 + -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 9760_down_of_Rv3190c 18 39 + -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 5188_up_of_Rv3186 18 39 + -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 6723_up_of_Rv3188 18 39 + -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 42_up_of_Rv3179 18 39 + -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 1681_down_of_Rv3180c 18 39 + -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 1682_down_of_Rv3180c 3 24 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 43_up_of_Rv3179 3 24 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 6724_up_of_Rv3188 3 24 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 5189_up_of_Rv3186 3 24 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 9761_down_of_Rv3190c 3 24 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 6730_up_of_Rv3188 9 30 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 49_up_of_Rv3179 9 30 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 1688_down_of_Rv3180c 9 30 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 5195_up_of_Rv3186 9 30 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 9767_down_of_Rv3190c 9 30 - -5.6 0.00943 0.332 CTGATCGGTGTACTTATAACCG Rv2788_pal_1 6723_up_of_Rv3188 18 39 - -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 9760_down_of_Rv3190c 18 39 - -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 5188_up_of_Rv3186 18 39 - -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 42_up_of_Rv3179 18 39 - -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv2788_pal_1 1681_down_of_Rv3180c 18 39 - -5.6 0.00943 0.332 CGGTTATAAGTACACCGATCAG Rv0653c_nonpal_1 sense_fadE7_118_to_stop 16 34 + -3.21519 0.00943 0.277 GCTGGAGTACCCGGTCATC Rv0653c_nonpal_1 antisense_fadE7_121_to_stop 4 22 - -3.21519 0.00943 0.277 GCTGGAGTACCCGGTCATC Rv0678_nonpal_1 sense_pks6_423_from_start 10 24 - 2.4375 0.00944 0.323 TGGATACGCTGTTAT Rv0678_nonpal_1 sense_pks6_424_from_start 10 24 - 2.4375 0.00944 0.323 TGGATACGCTGTTAT Rv0678_nonpal_1 antisense_pks6_431_from_start 24 38 + 2.4375 0.00944 0.323 TGGATACGCTGTTAT Rv0678_nonpal_1 antisense_pks6_430_from_start 24 38 + 2.4375 0.00944 0.323 TGGATACGCTGTTAT Rv0494_nonpal_1 antisense_accA1_595_from_start 14 33 + -5.23457 0.00944 1 CGCTCCAGGAATAGCGTATC Rv0494_nonpal_1 sense_accA1_598_from_start 5 24 - -5.23457 0.00944 1 CGCTCCAGGAATAGCGTATC Rv3830c_nonpal_2 sense_PE_PGRS57_112_from_start 10 36 - -27.6538 0.00944 0.57 GCCCGCAGCCAGCACCTGCGTGGTCGC Rv3830c_nonpal_2 sense_PE_PGRS54_112_from_start 10 36 - -27.6538 0.00944 0.57 GCCCGCAGCCAGCACCTGCGTGGTCGC Rv1353c_pal_1 sense_Rv2963_537_to_stop 18 28 + 3.69697 0.00944 0.334 GTACCCGAATC Rv1353c_pal_1 sense_Rv2038c_183_from_start 19 29 + 3.69697 0.00944 0.334 GTATCCGGATC Rv1353c_pal_1 antisense_Rv2963_530_to_stop 20 30 + 3.69697 0.00944 0.334 GATTCGGGTAC Rv1353c_pal_1 sense_Rv2963_537_to_stop 18 28 - 3.69697 0.00944 0.334 GATTCGGGTAC Rv1353c_pal_1 sense_Rv2038c_183_from_start 19 29 - 3.69697 0.00944 0.334 GATCCGGATAC Rv1353c_pal_1 antisense_Rv2963_530_to_stop 20 30 - 3.69697 0.00944 0.334 GTACCCGAATC Rv1353c_nonpal_1 antisense_cobK_311_from_start 6 20 + 2.45455 0.00944 0.324 GCGATGATGGCGGTA Rv0023_nonpal_2 sense_Rv1278_1158_to_stop 11 38 + -42.9904 0.00945 0.442 GGCGGCTGGAGAGGTCGCTGACCTAGCC Rv2021c_nonpal_1 antisense_aldA_642_from_start 6 26 + -2.54217 0.00945 0.6 AAGCGTGACTGCTGGAGGTGA Rv0023_nonpal_1 antisense_Rv1461_559_from_start 17 37 + 1.74648 0.00945 0.179 AGGGATTACTGTACCGAAATA Rv0023_nonpal_1 sense_Rv1461_552_from_start 11 31 - 1.74648 0.00945 0.179 AGGGATTACTGTACCGAAATA Rv0273c_nonpal_2 sense_Rv1461_552_from_start 2 27 + -49.5188 0.00946 0.438 TTCAAGGAATATTTCGGTACAGTAAT Rv0273c_nonpal_2 9767_down_of_Rv3190c 1 26 - -49.5188 0.00946 0.438 TCGGTGTACTTATAACCGACACTGTA Rv0273c_nonpal_2 5195_up_of_Rv3186 1 26 - -49.5188 0.00946 0.438 TCGGTGTACTTATAACCGACACTGTA Rv0273c_nonpal_2 6730_up_of_Rv3188 1 26 - -49.5188 0.00946 0.438 TCGGTGTACTTATAACCGACACTGTA Rv0273c_nonpal_2 49_up_of_Rv3179 1 26 - -49.5188 0.00946 0.438 TCGGTGTACTTATAACCGACACTGTA Rv0273c_nonpal_2 1688_down_of_Rv3180c 1 26 - -49.5188 0.00946 0.438 TCGGTGTACTTATAACCGACACTGTA Rv1473A_nonpal_1 10_up_of_Rv1866 23 36 + -9.27397 0.00946 0.476 CACCGATATGGTGA Rv1473A_nonpal_1 93_up_of_lpqG 16 29 - -9.27397 0.00946 0.476 TACTGGCATCGACG Rv3557c_nonpal_1 13078_down_of_Rv3190c 8 27 + -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 8506_up_of_Rv3186 8 27 + -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 3360_up_of_Rv3179 8 27 + -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 10041_up_of_Rv3188 8 27 + -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 4999_down_of_Rv3180c 8 27 + -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 8499_up_of_Rv3186 21 40 - -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 10034_up_of_Rv3188 21 40 - -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 3353_up_of_Rv3179 21 40 - -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 4992_down_of_Rv3180c 21 40 - -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv3557c_nonpal_1 13071_down_of_Rv3190c 21 40 - -19.7692 0.00946 0.341 AAAGCACAAAGTACACCAAT Rv2324_nonpal_1 sense_fadE7_118_to_stop 3 21 + 2.34783 0.00946 0.364 GCAACGGGATATCGCTGGA Rv2324_nonpal_1 sense_PE_PGRS57_112_from_start 10 28 - 2.34783 0.00946 0.364 CCAGCACCTGCGTGGTCGC Rv2324_nonpal_1 sense_PE_PGRS54_112_from_start 10 28 - 2.34783 0.00946 0.364 CCAGCACCTGCGTGGTCGC Rv2324_nonpal_1 antisense_fadE7_121_to_stop 17 35 - 2.34783 0.00946 0.364 GCAACGGGATATCGCTGGA Rv1359_nonpal_1 antisense_Rv1461_559_from_start 4 31 + -17.1346 0.00946 0.428 TATTATCGCCGGCAGGGATTACTGTACC Rv3246c_nonpal_1 antisense_Rv1251c_1309_from_start 8 27 - -2.1358 0.00946 0.386 AAGGCGCTGGAGCCGCTGTA Rv0653c_nonpal_1 sense_pyrC_548_to_stop 4 22 + -3.22785 0.00947 0.277 GGCTAAGGACCAGGGTATT Rv0981_nonpal_2 sense_fadE7_118_to_stop 10 30 + -6.74737 0.00947 0.491 GATATCGCTGGAGTACCCGGT Rv0981_nonpal_2 antisense_fadE7_121_to_stop 8 28 - -6.74737 0.00947 0.491 GATATCGCTGGAGTACCCGGT Rv3246c_pal_1 5189_up_of_Rv3186 5 20 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 9761_down_of_Rv3190c 5 20 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 43_up_of_Rv3179 5 20 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 1682_down_of_Rv3180c 5 20 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 6724_up_of_Rv3188 5 20 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 9767_down_of_Rv3190c 11 26 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 49_up_of_Rv3179 11 26 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 1688_down_of_Rv3180c 11 26 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 6730_up_of_Rv3188 11 26 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 5195_up_of_Rv3186 11 26 + 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 5189_up_of_Rv3186 5 20 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 9761_down_of_Rv3190c 5 20 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 43_up_of_Rv3179 5 20 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 1682_down_of_Rv3180c 5 20 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 6724_up_of_Rv3188 5 20 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 5188_up_of_Rv3186 22 37 + 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 9760_down_of_Rv3190c 22 37 + 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 6723_up_of_Rv3188 22 37 + 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 42_up_of_Rv3179 22 37 + 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 1681_down_of_Rv3180c 22 37 + 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 1688_down_of_Rv3180c 11 26 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 9767_down_of_Rv3190c 11 26 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 49_up_of_Rv3179 11 26 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 6730_up_of_Rv3188 11 26 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 5195_up_of_Rv3186 11 26 - 1.37805 0.00947 0.178 TCGGTGTACTTATAAC Rv3246c_pal_1 1681_down_of_Rv3180c 22 37 - 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 9760_down_of_Rv3190c 22 37 - 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 5188_up_of_Rv3186 22 37 - 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 6723_up_of_Rv3188 22 37 - 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv3246c_pal_1 42_up_of_Rv3179 22 37 - 1.37805 0.00947 0.178 GTTATAAGTACACCGA Rv1675c_nonpal_1 sense_Rv1461_475_from_start 13 33 - -15.8462 0.00948 1 GACTCCTTGAGCCTCCAGATC Rv1675c_nonpal_1 antisense_Rv1461_472_from_start 5 25 + -15.8462 0.00948 1 GACTCCTTGAGCCTCCAGATC Rv2021c_nonpal_1 sense_Rv2279_300_to_stop 7 27 + -2.55422 0.00948 0.6 CATACGGATAGGGGATCTCAG Rv1556_pal_1 antisense_rocA_790_to_stop 16 31 + -2.94737 0.00948 0.369 GGCCGATATTGGTACC Rv1556_pal_1 sense_rocA_797_to_stop 17 32 + -2.94737 0.00948 0.369 GGTACCAATATCGGCC Rv1556_pal_1 antisense_rocA_790_to_stop 16 31 - -2.94737 0.00948 0.369 GGTACCAATATCGGCC Rv1556_pal_1 sense_rocA_797_to_stop 17 32 - -2.94737 0.00948 0.369 GGCCGATATTGGTACC Rv0135c_pal_1 sense_pyrC_548_to_stop 15 24 + -0.421875 0.00948 0.313 AGGGTATTTC Rv0135c_pal_1 antisense_pyrC_541_to_stop 24 33 + -0.421875 0.00948 0.313 GAAATACCCT Rv0135c_pal_1 sense_pyrC_548_to_stop 15 24 - -0.421875 0.00948 0.313 GAAATACCCT Rv0135c_pal_1 antisense_pyrC_541_to_stop 24 33 - -0.421875 0.00948 0.313 AGGGTATTTC Rv1846c_nonpal_1 antisense_PPE24_1570_to_stop 4 25 + -18.3511 0.00948 0.407 TAGACTAAAGCCACCGATTGTG Rv1846c_nonpal_1 antisense_PPE24_1345_to_stop 4 25 + -18.3511 0.00948 0.407 TAGACTAAAGCCACCGATTGTG Rv1846c_nonpal_1 antisense_PPE24_1270_to_stop 4 25 + -18.3511 0.00948 0.407 TAGACTAAAGCCACCGATTGTG Rv0023_nonpal_2 antisense_treY_785_to_stop 6 33 + -43.0192 0.00949 0.442 CTGAAACGGGCTGGAGGCCCCCCACTCT Rv0023_nonpal_2 antisense_treZ_470_to_stop 6 33 + -43.0192 0.00949 0.442 CTGAAACGGGCTGGAGGCCCCCCACTCT Rv0023_nonpal_2 880_up_of_treZ 6 33 + -43.0192 0.00949 0.442 CTGAAACGGGCTGGAGGCCCCCCACTCT Rv0023_nonpal_2 sense_treZ_467_to_stop 5 32 - -43.0192 0.00949 0.442 CTGAAACGGGCTGGAGGCCCCCCACTCT Rv0023_nonpal_2 877_up_of_treZ 5 32 - -43.0192 0.00949 0.442 CTGAAACGGGCTGGAGGCCCCCCACTCT Rv0691c_pal_2 1662_up_of_Rv2018 26 34 + -4.6962 0.00949 0.606 ATTGATACA Rv0691c_pal_2 1662_up_of_Rv2018 26 34 - -4.6962 0.00949 0.606 TGTATCAAT Rv2788_nonpal_1 sense_gca_460_from_start 9 36 + -36.8372 0.00949 1 CATGCTGGCGTATCAATATCACAAGTCT Rv2788_nonpal_1 antisense_gca_467_from_start 12 39 - -36.8372 0.00949 1 CATGCTGGCGTATCAATATCACAAGTCT Rv3676_pal_1 sense_pyrC_548_to_stop 16 31 + -6.77143 0.0095 0.626 GGGTATTTCGATCACC Rv3676_pal_1 antisense_pyrC_541_to_stop 17 32 + -6.77143 0.0095 0.626 GGTGATCGAAATACCC Rv3676_pal_1 sense_pyrC_548_to_stop 16 31 - -6.77143 0.0095 0.626 GGTGATCGAAATACCC Rv3676_pal_1 antisense_pyrC_541_to_stop 17 32 - -6.77143 0.0095 0.626 GGGTATTTCGATCACC Rv0691c_pal_1 sense_gca_460_from_start 12 23 + 0.536232 0.0095 0.272 GCTGGCGTATCA Rv0691c_pal_1 sense_gca_460_from_start 12 23 - 0.536232 0.0095 0.272 TGATACGCCAGC Rv0691c_pal_1 antisense_gca_467_from_start 25 36 + 0.536232 0.0095 0.272 TGATACGCCAGC Rv0691c_pal_1 antisense_gca_467_from_start 25 36 - 0.536232 0.0095 0.272 GCTGGCGTATCA Rv1255c_nonpal_1 sense_Rv1461_552_from_start 8 27 + -6.51724 0.0095 0.465 GAATATTTCGGTACAGTAAT Rv1255c_nonpal_1 antisense_Rv1461_559_from_start 21 40 - -6.51724 0.0095 0.465 GAATATTTCGGTACAGTAAT Rv1846c_pal_1 3353_up_of_Rv3179 12 26 + -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 13071_down_of_Rv3190c 12 26 + -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 8499_up_of_Rv3186 12 26 + -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 4992_down_of_Rv3180c 12 26 + -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 10034_up_of_Rv3188 12 26 + -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 13078_down_of_Rv3190c 22 36 + -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 3360_up_of_Rv3179 22 36 + -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 10041_up_of_Rv3188 22 36 + -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 4999_down_of_Rv3180c 22 36 + -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 8506_up_of_Rv3186 22 36 + -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 3353_up_of_Rv3179 12 26 - -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 13071_down_of_Rv3190c 12 26 - -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 4992_down_of_Rv3180c 12 26 - -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 8499_up_of_Rv3186 12 26 - -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 10034_up_of_Rv3188 12 26 - -4.91579 0.0095 0.331 ACCAATCGGTTTACT Rv1846c_pal_1 3360_up_of_Rv3179 22 36 - -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 10041_up_of_Rv3188 22 36 - -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 8506_up_of_Rv3186 22 36 - -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 4999_down_of_Rv3180c 22 36 - -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv1846c_pal_1 13078_down_of_Rv3190c 22 36 - -4.91579 0.0095 0.331 AGTAAACCGATTGGT Rv0691c_pal_2 sense_PPE24_1352_to_stop 20 28 + -4.73418 0.0095 0.606 TATCACAAT Rv0691c_pal_2 sense_PPE24_1277_to_stop 20 28 + -4.73418 0.0095 0.606 TATCACAAT Rv0691c_pal_2 antisense_PPE24_1345_to_stop 20 28 + -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 sense_PPE24_1577_to_stop 20 28 + -4.73418 0.0095 0.606 TATCACAAT Rv0691c_pal_2 antisense_PPE24_1270_to_stop 20 28 + -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 antisense_PPE24_1570_to_stop 20 28 + -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 sense_PPE24_1277_to_stop 20 28 - -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 antisense_PPE24_1345_to_stop 20 28 - -4.73418 0.0095 0.606 TATCACAAT Rv0691c_pal_2 sense_PPE24_1577_to_stop 20 28 - -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 sense_PPE24_1352_to_stop 20 28 - -4.73418 0.0095 0.606 ATTGTGATA Rv0691c_pal_2 antisense_PPE24_1570_to_stop 20 28 - -4.73418 0.0095 0.606 TATCACAAT Rv0691c_pal_2 antisense_PPE24_1270_to_stop 20 28 - -4.73418 0.0095 0.606 TATCACAAT Rv2011c_pal_1 antisense_pyrC_541_to_stop 4 18 + 2.70833 0.0095 0.851 GGGTGACCTCGGCGG Rv2011c_pal_1 antisense_pyrC_541_to_stop 4 18 - 2.70833 0.0095 0.851 CCGCCGAGGTCACCC Rv2021c_nonpal_1 10_up_of_Rv1866 2 22 + -2.56627 0.0095 0.6 CGACGGCTGTTCTGCTGGAGG Rv3736_nonpal_1 antisense_Rv1461_559_from_start 5 19 - 1.75362 0.00951 0.628 CCTGCCGGCGATAAT Rv0494_nonpal_2 antisense_fadE7_121_to_stop 9 23 - -11.0947 0.00951 1 CGCTGGAGTACCCGG Rv0494_nonpal_2 sense_fadE7_118_to_stop 15 29 + -11.0947 0.00951 1 CGCTGGAGTACCCGG Rv2887_pal_1 antisense_Rv2279_293_to_stop 4 18 + -0.9625 0.00951 0.394 AACCGGATCGATGTG Rv2887_pal_1 antisense_Rv2279_293_to_stop 4 18 - -0.9625 0.00951 0.394 CACATCGATCCGGTT Rv1994c_nonpal_1 antisense_gca_467_from_start 7 21 - 1.19178 0.00952 0.306 TCACAAGTCTTACGG Rv2788_nonpal_2 sense_gca_460_from_start 11 38 + -27.3023 0.00952 0.552 TGCTGGCGTATCAATATCACAAGTCTTA Rv2788_nonpal_2 antisense_gca_467_from_start 10 37 - -27.3023 0.00952 0.552 TGCTGGCGTATCAATATCACAAGTCTTA Rv3676_pal_1 sense_gca_460_from_start 16 31 + -6.78095 0.00952 0.626 GCGTATCAATATCACA Rv3676_pal_1 antisense_gca_467_from_start 17 32 + -6.78095 0.00952 0.626 TGTGATATTGATACGC Rv3676_pal_1 sense_gca_460_from_start 16 31 - -6.78095 0.00952 0.626 TGTGATATTGATACGC Rv3676_pal_1 antisense_gca_467_from_start 17 32 - -6.78095 0.00952 0.626 GCGTATCAATATCACA Rv1675c_nonpal_1 93_up_of_lpqG 16 36 - -15.875 0.00952 1 TTCGGGGTACTGGCATCGACG Rv3488_nonpal_1 sense_bioB_253_to_stop 17 30 + -7.14706 0.00953 0.464 TGGAGGTAATGCCG Rv1846c_pal_1 antisense_gca_467_from_start 8 22 + -4.92632 0.00953 0.331 CGTAAGACTTGTGAT Rv1846c_pal_1 antisense_gca_467_from_start 8 22 - -4.92632 0.00953 0.331 ATCACAAGTCTTACG Rv1846c_pal_1 sense_gca_460_from_start 26 40 + -4.92632 0.00953 0.331 ATCACAAGTCTTACG Rv1846c_pal_1 sense_gca_460_from_start 26 40 - -4.92632 0.00953 0.331 CGTAAGACTTGTGAT Rv1956_pal_1 sense_mmpL4_1184_to_stop 11 18 + -2.62791 0.00953 0.256 TGATTTCT Rv1956_pal_1 sense_pyrC_548_to_stop 16 23 + -2.62791 0.00953 0.256 GGGTATTT Rv1956_pal_1 sense_mmpL4_1184_to_stop 11 18 - -2.62791 0.00953 0.256 AGAAATCA Rv1956_pal_1 antisense_mmpL4_1187_to_stop 20 27 + -2.62791 0.00953 0.256 AGAAATCA Rv1956_pal_1 sense_pyrC_548_to_stop 16 23 - -2.62791 0.00953 0.256 AAATACCC Rv1956_pal_1 antisense_pyrC_541_to_stop 25 32 + -2.62791 0.00953 0.256 AAATACCC Rv1956_pal_1 antisense_mmpL4_1187_to_stop 20 27 - -2.62791 0.00953 0.256 TGATTTCT Rv1956_pal_1 antisense_pyrC_541_to_stop 25 32 - -2.62791 0.00953 0.256 GGGTATTT Rv0047c_pal_1 sense_Rv1278_1158_to_stop 17 28 + 2.78788 0.00954 0.458 TGGAGAGGTCGC Rv0047c_pal_1 sense_Rv1278_1158_to_stop 17 28 - 2.78788 0.00954 0.458 GCGACCTCTCCA Rv1719_pal_1 antisense_Rv1461_559_from_start 7 21 + 1.7 0.00954 1 TATCGCCGGCAGGGA Rv1219c_pal_1 sense_Rv0674_10_to_stop 25 33 + -0.35443 0.00954 0.546 ACATGAGTG Rv1219c_pal_1 sense_Rv0674_10_to_stop 25 33 - -0.35443 0.00954 0.546 CACTCATGT Rv3246c_pal_1 antisense_cobK_311_from_start 1 16 + 1.35366 0.00954 0.178 ATACCGCGATGATGGC Rv3246c_pal_1 antisense_cobK_311_from_start 1 16 - 1.35366 0.00954 0.178 GCCATCATCGCGGTAT Rv0472c_nonpal_1 5188_up_of_Rv3186 23 33 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 9760_down_of_Rv3190c 23 33 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 1681_down_of_Rv3180c 23 33 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 6723_up_of_Rv3188 23 33 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 42_up_of_Rv3179 23 33 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 5182_up_of_Rv3186 29 39 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 9754_down_of_Rv3190c 29 39 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 1675_down_of_Rv3180c 29 39 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 6717_up_of_Rv3188 29 39 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 36_up_of_Rv3179 29 39 - -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 9761_down_of_Rv3190c 9 19 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 1682_down_of_Rv3180c 9 19 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 6724_up_of_Rv3188 9 19 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 5189_up_of_Rv3186 9 19 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 43_up_of_Rv3179 9 19 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 9767_down_of_Rv3190c 15 25 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 49_up_of_Rv3179 15 25 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 1688_down_of_Rv3180c 15 25 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 6730_up_of_Rv3188 15 25 + -6.66346 0.00955 0.266 TAAGTACACCG Rv0472c_nonpal_1 5195_up_of_Rv3186 15 25 + -6.66346 0.00955 0.266 TAAGTACACCG Rv1353c_nonpal_1 antisense_accA1_595_from_start 3 17 + 2.42424 0.00955 0.324 GCAACACAAACCGCT Rv1353c_nonpal_1 antisense_Rv2963_530_to_stop 26 40 + 2.42424 0.00955 0.324 GGTACCCATGCCGCG Rv1353c_nonpal_1 sense_Rv2963_537_to_stop 8 22 - 2.42424 0.00955 0.324 GGTACCCATGCCGCG Rv1353c_nonpal_1 sense_accA1_598_from_start 21 35 - 2.42424 0.00955 0.324 GCAACACAAACCGCT Rv3849_nonpal_2 sense_fadE7_118_to_stop 2 29 + -19.8837 0.00956 1 GGCAACGGGATATCGCTGGAGTACCCGG Rv3849_nonpal_2 antisense_fadE7_121_to_stop 9 36 - -19.8837 0.00956 1 GGCAACGGGATATCGCTGGAGTACCCGG Rv3574_pal_1 sense_pks6_424_from_start 16 31 + 0.536232 0.00956 0.289 GCGTATCCAGATCGTG Rv3574_pal_1 sense_pks6_423_from_start 16 31 + 0.536232 0.00956 0.289 GCGTATCCAGATCGTG Rv3574_pal_1 antisense_pks6_431_from_start 17 32 + 0.536232 0.00956 0.289 CACGATCTGGATACGC Rv3574_pal_1 antisense_pks6_430_from_start 17 32 + 0.536232 0.00956 0.289 CACGATCTGGATACGC Rv3574_pal_1 sense_pks6_423_from_start 16 31 - 0.536232 0.00956 0.289 CACGATCTGGATACGC Rv3574_pal_1 sense_pks6_424_from_start 16 31 - 0.536232 0.00956 0.289 CACGATCTGGATACGC Rv3574_pal_1 antisense_pks6_431_from_start 17 32 - 0.536232 0.00956 0.289 GCGTATCCAGATCGTG Rv3574_pal_1 antisense_pks6_430_from_start 17 32 - 0.536232 0.00956 0.289 GCGTATCCAGATCGTG Rv1990c_pal_1 sense_pks9_325_to_stop 2 16 + 2.83824 0.00956 1 AACTACGCAATCGTC Rv1990c_pal_1 sense_pks9_325_to_stop 2 16 - 2.83824 0.00956 1 GACGATTGCGTAGTT Rv0967_nonpal_2 sense_bioB_253_to_stop 2 22 + -21.1596 0.00956 1 CCCCGTTCGCCGACCTGGAGG Rv3765c_nonpal_1 antisense_pks6_431_from_start 5 24 + -12.3684 0.00957 0.654 CATTCGTGAACCCACGATCT Rv3765c_nonpal_1 antisense_pks6_430_from_start 5 24 + -12.3684 0.00957 0.654 CATTCGTGAACCCACGATCT Rv3488_pal_2 sense_pks9_325_to_stop 7 14 + -8.76744 0.00957 0.59 CGCAATCG Rv3488_pal_2 sense_pks9_325_to_stop 7 14 - -8.76744 0.00957 0.59 CGATTGCG Rv0691c_nonpal_1 antisense_accA1_595_from_start 27 40 + -3.60938 0.00957 0.574 GCGTATCGTCCCCG Rv1719_pal_1 antisense_Rv1461_559_from_start 7 21 - 1.6875 0.00957 1 TCCCTGCCGGCGATA Rv0081_nonpal_2 sense_mmpL4_1184_to_stop 1 22 + -31.6154 0.00958 0.729 CGGATTTTGATGATTTCTGGAG Rv0081_nonpal_2 antisense_Rv1251c_1309_from_start 18 39 + -31.6154 0.00958 0.729 CCAGCGCCTTCAAGCTGAACGA Rv0081_nonpal_2 antisense_mmpL4_1187_to_stop 16 37 - -31.6154 0.00958 0.729 CGGATTTTGATGATTTCTGGAG Rv0324_nonpal_1 sense_bioB_253_to_stop 6 13 - -4.10294 0.00958 0.486 CGGCGAAC Rv0324_nonpal_1 sense_Rv2038c_183_from_start 29 36 + -4.10294 0.00958 0.486 CGGCGAGC Rv1828_nonpal_1 antisense_gca_467_from_start 13 36 + -12.8936 0.00958 0.505 GACTTGTGATATTGATACGCCAGC Rv1828_nonpal_1 sense_gca_460_from_start 12 35 - -12.8936 0.00958 0.505 GACTTGTGATATTGATACGCCAGC Rv1049_nonpal_2 sense_mmpL4_1184_to_stop 19 33 + -1.97333 0.00959 0.691 GGAGACCAATTCGAA Rv1049_nonpal_2 antisense_mmpL4_1187_to_stop 5 19 - -1.97333 0.00959 0.691 GGAGACCAATTCGAA Rv0023_nonpal_2 sense_pks6_424_from_start 2 29 + -43.0962 0.00959 0.442 AGTGTGCGATAACAGCGTATCCAGATCG Rv0023_nonpal_2 sense_pks6_423_from_start 2 29 + -43.0962 0.00959 0.442 AGTGTGCGATAACAGCGTATCCAGATCG Rv0022c_nonpal_1 sense_Rv1461_475_from_start 22 36 - -1.15068 0.00959 0.257 TATGACTCCTTGAGC Rv0022c_nonpal_1 antisense_Rv1461_472_from_start 2 16 + -1.15068 0.00959 0.257 TATGACTCCTTGAGC Rv0465c_nonpal_1 93_up_of_lpqG 16 39 + -20.8161 0.00959 0.901 CGTCGATGCCAGTACCCCGAAATT Rv3574_nonpal_2 antisense_Rv1461_416_from_start 12 39 + -44.6581 0.0096 0.482 GGCTACTCCAGCTACTAATCTCTGCTTC Rv3830c_pal_1 antisense_rocA_790_to_stop 15 30 + -0.324675 0.0096 1 CGGCCGATATTGGTAC Rv3830c_pal_1 sense_rocA_797_to_stop 18 33 + -0.324675 0.0096 1 GTACCAATATCGGCCG Rv3830c_pal_1 antisense_rocA_790_to_stop 15 30 - -0.324675 0.0096 1 GTACCAATATCGGCCG Rv3830c_pal_1 sense_rocA_797_to_stop 18 33 - -0.324675 0.0096 1 CGGCCGATATTGGTAC Rv0818_nonpal_1 antisense_accA1_595_from_start 18 38 + -8.56383 0.0096 0.542 CCAGGAATAGCGTATCGTCCC Rv2250c_nonpal_1 sense_gca_460_from_start 3 12 + 0.434783 0.00961 0.516 CACCGACATG Rv1423_nonpal_2 antisense_frdA_787_from_start 7 26 + -26.3617 0.00961 1 GGTCGTAATCCTGGAGGTAG Rv3249c_nonpal_2 sense_Rv1461_552_from_start 2 16 - -0.466667 0.00961 0.721 GAAATATTCCTTGAA Rv1816_pal_1 antisense_Rv2279_293_to_stop 8 20 + 2.89655 0.00962 0.329 GGATCGATGTGTA Rv1816_pal_1 antisense_Rv2279_293_to_stop 8 20 - 2.89655 0.00962 0.329 TACACATCGATCC Rv1816_pal_1 sense_Rv2279_300_to_stop 28 40 + 2.89655 0.00962 0.329 TACACATCGATCC Rv1816_pal_1 sense_Rv2279_300_to_stop 28 40 - 2.89655 0.00962 0.329 GGATCGATGTGTA Rv1776c_nonpal_1 sense_PPE34_3066_to_stop 2 7 + -1.20548 0.00962 0.802 TTTTCC Rv1776c_nonpal_1 sense_PPE34_1664_from_start 2 7 + -1.20548 0.00962 0.802 TTTTCC Rv1776c_nonpal_1 sense_PPE34_1439_from_start 2 7 + -1.20548 0.00962 0.802 TTTTCC Rv1776c_nonpal_1 antisense_PPE34_1661_from_start 31 36 - -1.20548 0.00962 0.802 TTTTCC Rv0022c_nonpal_1 10_up_of_Rv1866 7 21 + -1.16438 0.00962 0.257 GCTGTTCTGCTGGAG Rv0691c_nonpal_1 1662_up_of_Rv2018 24 37 + -3.64062 0.00962 0.574 AAATTGATACAAGA Rv0081_nonpal_2 sense_Rv1461_552_from_start 9 30 + -31.6538 0.00963 0.729 AATATTTCGGTACAGTAATCCC Rv0081_nonpal_2 antisense_Rv1461_559_from_start 18 39 - -31.6538 0.00963 0.729 AATATTTCGGTACAGTAATCCC Rv2324_nonpal_1 sense_gca_460_from_start 4 22 - 2.30435 0.00963 0.367 GATACGCCAGCATGTCGGT Rv0494_pal_1 antisense_Rv0370c_389_from_start 18 34 + 1.22143 0.00963 1 GGAGGGGTCGGTCCGCG Rv0494_pal_1 antisense_Rv0370c_389_from_start 18 34 - 1.22143 0.00963 1 CGCGGACCGACCCCTCC Rv3488_nonpal_1 antisense_metA_391_from_start 17 30 - -7.20588 0.00964 0.464 TGATCTCGATACGT Rv3488_nonpal_1 sense_metA_384_from_start 18 31 + -7.20588 0.00964 0.464 TGATCTCGATACGT Rv3574_nonpal_2 antisense_pks6_430_from_start 5 32 - -44.6923 0.00964 0.482 GCGTATCCAGATCGTGGGTTCACGAATG Rv3574_nonpal_2 antisense_pks6_431_from_start 5 32 - -44.6923 0.00964 0.482 GCGTATCCAGATCGTGGGTTCACGAATG Rv0653c_pal_1 7_up_of_Rv1049 5 28 + -0.594937 0.00965 0.198 CTTTGCCCATTACTCCAGACTCGT Rv0653c_pal_1 4_up_of_Rv1049 10 33 + -0.594937 0.00965 0.198 ACGAGTCTGGAGTAATGGGCAAAG Rv0653c_pal_1 7_up_of_Rv1049 5 28 - -0.594937 0.00965 0.198 ACGAGTCTGGAGTAATGGGCAAAG Rv0653c_pal_1 4_up_of_Rv1049 10 33 - -0.594937 0.00965 0.198 CTTTGCCCATTACTCCAGACTCGT Rv1423_nonpal_1 sense_Rv2963_537_to_stop 23 33 + 0.0724638 0.00965 1 CGAATCGTTCT Rv1423_nonpal_1 antisense_Rv2963_530_to_stop 15 25 - 0.0724638 0.00965 1 CGAATCGTTCT Rv0818_pal_1 sense_PPE34_3066_to_stop 2 17 + -1.64583 0.00966 0.248 TTTTCCCCGGATTCCC Rv0818_pal_1 sense_PPE34_1439_from_start 2 17 + -1.64583 0.00966 0.248 TTTTCCCCGGATTCCC Rv0818_pal_1 sense_PPE34_1664_from_start 2 17 + -1.64583 0.00966 0.248 TTTTCCCCGGATTCCC Rv0818_pal_1 sense_PPE34_3066_to_stop 2 17 - -1.64583 0.00966 0.248 GGGAATCCGGGGAAAA Rv0818_pal_1 sense_PPE34_1664_from_start 2 17 - -1.64583 0.00966 0.248 GGGAATCCGGGGAAAA Rv0818_pal_1 sense_PPE34_1439_from_start 2 17 - -1.64583 0.00966 0.248 GGGAATCCGGGGAAAA Rv0818_pal_1 antisense_PPE34_1661_from_start 21 36 + -1.64583 0.00966 0.248 GGGAATCCGGGGAAAA Rv0818_pal_1 antisense_PPE34_1661_from_start 21 36 - -1.64583 0.00966 0.248 TTTTCCCCGGATTCCC Rv3557c_nonpal_1 antisense_fadE7_121_to_stop 15 34 + -19.8942 0.00967 0.341 ACTCCAGCGATATCCCGTTG Rv3557c_nonpal_1 sense_fadE7_118_to_stop 4 23 - -19.8942 0.00967 0.341 ACTCCAGCGATATCCCGTTG Rv1167c_nonpal_1 sense_bioB_253_to_stop 20 34 - -8.56731 0.00967 0.958 CGACCGGCATTACCT Rv1353c_pal_1 10_up_of_Rv1866 12 22 + 3.63636 0.00967 0.334 TCTGCTGGAGG Rv1353c_pal_1 10_up_of_Rv1866 12 22 - 3.63636 0.00967 0.334 CCTCCAGCAGA Rv3249c_nonpal_1 9754_down_of_Rv3190c 5 15 - 0.53125 0.00967 0.56 GAGTCGGCGTG Rv3249c_nonpal_1 5182_up_of_Rv3186 5 15 - 0.53125 0.00967 0.56 GAGTCGGCGTG Rv3249c_nonpal_1 36_up_of_Rv3179 5 15 - 0.53125 0.00967 0.56 GAGTCGGCGTG Rv3249c_nonpal_1 6717_up_of_Rv3188 5 15 - 0.53125 0.00967 0.56 GAGTCGGCGTG Rv3249c_nonpal_1 1675_down_of_Rv3180c 5 15 - 0.53125 0.00967 0.56 GAGTCGGCGTG Rv3849_pal_1 antisense_aldA_642_from_start 13 20 + 2.76623 0.00967 1 ACTGCTGG Rv3849_pal_1 antisense_aldA_642_from_start 13 20 - 2.76623 0.00967 1 CCAGCAGT Rv0472c_nonpal_1 antisense_cobK_311_from_start 10 20 - -6.69231 0.00968 0.266 TACCGCCATCA Rv0472c_nonpal_1 sense_cobK_304_from_start 28 38 + -6.69231 0.00968 0.266 TACCGCCATCA Rv0981_nonpal_2 9754_down_of_Rv3190c 1 21 + -6.84211 0.00968 0.491 GGGGCACGCCGACTCCTTGTA Rv0981_nonpal_2 6717_up_of_Rv3188 1 21 + -6.84211 0.00968 0.491 GGGGCACGCCGACTCCTTGTA Rv0981_nonpal_2 5182_up_of_Rv3186 1 21 + -6.84211 0.00968 0.491 GGGGCACGCCGACTCCTTGTA Rv0981_nonpal_2 36_up_of_Rv3179 1 21 + -6.84211 0.00968 0.491 GGGGCACGCCGACTCCTTGTA Rv0981_nonpal_2 1675_down_of_Rv3180c 1 21 + -6.84211 0.00968 0.491 GGGGCACGCCGACTCCTTGTA Rv2324_nonpal_2 antisense_rocA_790_to_stop 6 20 - -2.9759 0.00968 0.72 CGGCCGCTACCATAG Rv1404_nonpal_1 sense_pks6_424_from_start 3 28 - -2.375 0.00968 0.118 GATCTGGATACGCTGTTATCGCACAC Rv1404_nonpal_1 sense_pks6_423_from_start 3 28 - -2.375 0.00968 0.118 GATCTGGATACGCTGTTATCGCACAC Rv2374c_nonpal_1 antisense_aldA_642_from_start 2 29 + -15.3077 0.00968 0.557 CCCAAAGCGTGACTGCTGGAGGTGACGA Rv3849_nonpal_1 antisense_aldA_642_from_start 27 38 + -4.79452 0.00968 0.739 CGATGTTGACAA Rv0653c_pal_1 10_up_of_Rv1866 2 25 + -0.607595 0.00969 0.198 CGACGGCTGTTCTGCTGGAGGCAC Rv0653c_pal_1 10_up_of_Rv1866 2 25 - -0.607595 0.00969 0.198 GTGCCTCCAGCAGAACAGCCGTCG Rv0678_nonpal_1 sense_Rv1461_552_from_start 7 21 + 2.375 0.00969 0.329 GGAATATTTCGGTAC Rv2009_nonpal_1 1662_up_of_Rv2018 20 40 + -3.87342 0.00969 0.325 AGTGAAATTGATACAAGATCG Rv3066_pal_1 93_up_of_lpqG 18 31 + -0.363636 0.0097 1 TCGATGCCAGTACC Rv3066_pal_1 93_up_of_lpqG 18 31 - -0.363636 0.0097 1 GGTACTGGCATCGA Rv3574_nonpal_2 antisense_PPE24_1570_to_stop 4 31 - -44.7436 0.0097 0.482 GGGTATCACAATCGGTGGCTTTAGTCTA Rv3574_nonpal_2 antisense_PPE24_1345_to_stop 4 31 - -44.7436 0.0097 0.482 GGGTATCACAATCGGTGGCTTTAGTCTA Rv3574_nonpal_2 antisense_PPE24_1270_to_stop 4 31 - -44.7436 0.0097 0.482 GGGTATCACAATCGGTGGCTTTAGTCTA Rv1556_nonpal_1 antisense_PPE24_1345_to_stop 9 25 + -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1556_nonpal_1 antisense_PPE24_1270_to_stop 9 25 + -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1556_nonpal_1 antisense_PPE24_1570_to_stop 9 25 + -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1556_nonpal_1 sense_PPE24_1577_to_stop 23 39 - -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1556_nonpal_1 sense_PPE24_1352_to_stop 23 39 - -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1556_nonpal_1 sense_PPE24_1277_to_stop 23 39 - -9.96809 0.0097 0.72 TAAAGCCACCGATTGTG Rv1956_nonpal_1 antisense_metA_391_from_start 18 38 + -3.76744 0.00971 0.341 CGTATCGAGATCAGCGGAAAT Rv1956_nonpal_1 sense_metA_384_from_start 10 30 - -3.76744 0.00971 0.341 CGTATCGAGATCAGCGGAAAT Rv1473A_nonpal_1 antisense_Rv2279_293_to_stop 3 16 - -9.41096 0.00971 0.483 CATCGATCCGGTTC Rv3849_nonpal_1 sense_pks6_424_from_start 13 24 - -4.80822 0.00971 0.739 TGGATACGCTGT Rv3849_nonpal_1 sense_pks6_423_from_start 13 24 - -4.80822 0.00971 0.739 TGGATACGCTGT Rv3849_nonpal_1 antisense_pks6_431_from_start 24 35 + -4.80822 0.00971 0.739 TGGATACGCTGT Rv3849_nonpal_1 antisense_pks6_430_from_start 24 35 + -4.80822 0.00971 0.739 TGGATACGCTGT Rv1353c_nonpal_1 sense_mptA_23_from_start 12 26 + 2.37879 0.00972 0.325 CATGCTCCAGCGGTT Rv1353c_nonpal_1 37_up_of_Rv2172c 12 26 + 2.37879 0.00972 0.325 CATGCTCCAGCGGTT Rv1675c_pal_1 antisense_metA_391_from_start 2 17 + -8.68571 0.00972 1 CGCCTGCACCTGGTCA Rv1675c_pal_1 antisense_metA_391_from_start 2 17 - -8.68571 0.00972 1 TGACCAGGTGCAGGCG Rv1994c_nonpal_1 sense_pks6_424_from_start 25 39 + 1.12329 0.00972 0.306 GATCGTGGGTTCACG Rv1994c_nonpal_1 sense_pks6_423_from_start 25 39 + 1.12329 0.00972 0.306 GATCGTGGGTTCACG Rv1994c_nonpal_1 antisense_pks6_431_from_start 9 23 - 1.12329 0.00972 0.306 GATCGTGGGTTCACG Rv1994c_nonpal_1 antisense_pks6_430_from_start 9 23 - 1.12329 0.00972 0.306 GATCGTGGGTTCACG Rv3681c_nonpal_1 sense_Rv2963_537_to_stop 21 40 + -3.77215 0.00972 0.471 CCCGAATCGTTCTGGCAGAG Rv3681c_nonpal_1 antisense_Rv2963_530_to_stop 8 27 - -3.77215 0.00972 0.471 CCCGAATCGTTCTGGCAGAG Rv2324_nonpal_2 sense_PE_PGRS54_112_from_start 26 40 + -3 0.00973 0.72 TGGCTGCGGGCGCCG Rv2324_nonpal_2 sense_PE_PGRS57_112_from_start 26 40 + -3 0.00973 0.72 TGGCTGCGGGCGCCG Rv2324_nonpal_2 sense_Rv1278_1158_to_stop 14 28 - -3 0.00973 0.72 GCGACCTCTCCAGCC Rv1828_nonpal_1 3360_up_of_Rv3179 5 28 - -12.9681 0.00973 0.505 GATTGGTGTACTTTGTGCTTTGAC Rv1828_nonpal_1 13078_down_of_Rv3190c 5 28 - -12.9681 0.00973 0.505 GATTGGTGTACTTTGTGCTTTGAC Rv1828_nonpal_1 8506_up_of_Rv3186 5 28 - -12.9681 0.00973 0.505 GATTGGTGTACTTTGTGCTTTGAC Rv1828_nonpal_1 4999_down_of_Rv3180c 5 28 - -12.9681 0.00973 0.505 GATTGGTGTACTTTGTGCTTTGAC Rv1828_nonpal_1 10041_up_of_Rv3188 5 28 - -12.9681 0.00973 0.505 GATTGGTGTACTTTGTGCTTTGAC Rv2021c_pal_1 antisense_aldA_642_from_start 16 30 + 2.67816 0.00973 0.859 GCTGGAGGTGACGAT Rv2021c_pal_1 antisense_aldA_642_from_start 16 30 - 2.67816 0.00973 0.859 ATCGTCACCTCCAGC Rv3574_nonpal_1 sense_bioB_253_to_stop 11 25 + -4 0.00973 0.35 CCGACCTGGAGGTAA Rv0691c_nonpal_2 sense_cobK_304_from_start 14 37 + -45.2212 0.00974 0.669 CCGTGGGATCCCGGTACCGCCATC Rv0691c_nonpal_2 antisense_cobK_311_from_start 11 34 - -45.2212 0.00974 0.669 CCGTGGGATCCCGGTACCGCCATC Rv2324_nonpal_1 sense_Rv1461_552_from_start 6 24 - 2.27536 0.00975 0.368 ACTGTACCGAAATATTCCT Rv3849_nonpal_1 antisense_Rv1251c_1309_from_start 18 29 - -4.82192 0.00975 0.739 TGAAGGCGCTGG Rv3574_pal_1 sense_Rv2963_537_to_stop 9 24 + 0.478261 0.00975 0.289 GCGGCATGGGTACCCG Rv3574_pal_1 sense_Rv2963_537_to_stop 9 24 - 0.478261 0.00975 0.289 CGGGTACCCATGCCGC Rv3574_pal_1 antisense_Rv2963_530_to_stop 24 39 + 0.478261 0.00975 0.289 CGGGTACCCATGCCGC Rv3574_pal_1 antisense_Rv2963_530_to_stop 24 39 - 0.478261 0.00975 0.289 GCGGCATGGGTACCCG Rv0757_pal_1 4999_down_of_Rv3180c 3 16 + 1.81013 0.00975 0.719 CCGTCAAAGCACAA Rv0757_pal_1 8506_up_of_Rv3186 3 16 + 1.81013 0.00975 0.719 CCGTCAAAGCACAA Rv0757_pal_1 3360_up_of_Rv3179 3 16 + 1.81013 0.00975 0.719 CCGTCAAAGCACAA Rv0757_pal_1 13078_down_of_Rv3190c 3 16 + 1.81013 0.00975 0.719 CCGTCAAAGCACAA Rv0757_pal_1 10041_up_of_Rv3188 3 16 + 1.81013 0.00975 0.719 CCGTCAAAGCACAA Rv0757_pal_1 8506_up_of_Rv3186 3 16 - 1.81013 0.00975 0.719 TTGTGCTTTGACGG Rv0757_pal_1 3360_up_of_Rv3179 3 16 - 1.81013 0.00975 0.719 TTGTGCTTTGACGG Rv0757_pal_1 13078_down_of_Rv3190c 3 16 - 1.81013 0.00975 0.719 TTGTGCTTTGACGG Rv0757_pal_1 4999_down_of_Rv3180c 3 16 - 1.81013 0.00975 0.719 TTGTGCTTTGACGG Rv0757_pal_1 10041_up_of_Rv3188 3 16 - 1.81013 0.00975 0.719 TTGTGCTTTGACGG Rv2359_nonpal_1 antisense_Rv1461_416_from_start 9 36 - -26.7019 0.00975 0.31 GCAGAGATTAGTAGCTGGAGTAGCCGCA Rv0023_pal_2 sense_Rv1461_552_from_start 3 18 + 0.545455 0.00975 0.447 TCAAGGAATATTTCGG Rv0023_pal_2 sense_Rv1461_552_from_start 3 18 - 0.545455 0.00975 0.447 CCGAAATATTCCTTGA Rv0302_nonpal_1 antisense_aldA_642_from_start 16 30 + 1.26087 0.00975 0.472 GCTGGAGGTGACGAT Rv0275c_nonpal_1 antisense_aldA_642_from_start 7 32 - -17.6923 0.00976 0.275 ACATCGTCACCTCCAGCAGTCACGCT Rv1167c_nonpal_1 sense_pks9_325_to_stop 2 16 + -8.61538 0.00977 0.958 AACTACGCAATCGTC Rv1994c_nonpal_1 sense_mptA_23_from_start 8 22 - 1.10959 0.00977 0.306 GCTGGAGCATGGCTC Rv1994c_nonpal_1 37_up_of_Rv2172c 8 22 - 1.10959 0.00977 0.306 GCTGGAGCATGGCTC Rv0602c_nonpal_1 sense_metA_384_from_start 17 28 + -3.26027 0.00977 0.538 CTGATCTCGATA Rv0602c_nonpal_1 antisense_metA_391_from_start 20 31 - -3.26027 0.00977 0.538 CTGATCTCGATA Rv1353c_pal_1 6723_up_of_Rv3188 14 24 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 5188_up_of_Rv3186 14 24 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 1681_down_of_Rv3180c 14 24 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 9760_down_of_Rv3190c 14 24 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 42_up_of_Rv3179 14 24 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 6724_up_of_Rv3188 18 28 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 5189_up_of_Rv3186 18 28 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 9761_down_of_Rv3190c 18 28 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 1682_down_of_Rv3180c 18 28 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 43_up_of_Rv3179 18 28 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 36_up_of_Rv3179 20 30 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 6717_up_of_Rv3188 20 30 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 5182_up_of_Rv3186 20 30 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 9754_down_of_Rv3190c 20 30 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 1675_down_of_Rv3180c 20 30 + 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 6730_up_of_Rv3188 24 34 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 6723_up_of_Rv3188 14 24 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 5195_up_of_Rv3186 24 34 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 5188_up_of_Rv3186 14 24 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 1681_down_of_Rv3180c 14 24 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 49_up_of_Rv3179 24 34 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 1688_down_of_Rv3180c 24 34 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 9767_down_of_Rv3190c 24 34 + 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 9760_down_of_Rv3190c 14 24 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 42_up_of_Rv3179 14 24 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 6724_up_of_Rv3188 18 28 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 5189_up_of_Rv3186 18 28 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 1682_down_of_Rv3180c 18 28 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 9761_down_of_Rv3190c 18 28 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 43_up_of_Rv3179 18 28 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 6717_up_of_Rv3188 20 30 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 36_up_of_Rv3179 20 30 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 5182_up_of_Rv3186 20 30 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 1675_down_of_Rv3180c 20 30 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 9754_down_of_Rv3190c 20 30 - 3.60606 0.00977 0.334 CGATCAGTATA Rv1353c_pal_1 6730_up_of_Rv3188 24 34 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 5195_up_of_Rv3186 24 34 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 9767_down_of_Rv3190c 24 34 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 49_up_of_Rv3179 24 34 - 3.60606 0.00977 0.334 TATACTGATCG Rv1353c_pal_1 1688_down_of_Rv3180c 24 34 - 3.60606 0.00977 0.334 TATACTGATCG Rv0022c_nonpal_1 37_up_of_Rv2172c 7 21 + -1.23288 0.00977 0.257 CGAGCCATGCTCCAG Rv0022c_nonpal_1 sense_mptA_23_from_start 7 21 + -1.23288 0.00977 0.257 CGAGCCATGCTCCAG Rv1404_nonpal_1 antisense_gca_467_from_start 5 30 + -2.4125 0.00978 0.118 TGCCGTAAGACTTGTGATATTGATAC Rv0023_nonpal_1 antisense_Rv1461_416_from_start 6 26 - 1.66197 0.00978 0.184 GTAGCTGGAGTAGCCGCACAA Rv3681c_nonpal_1 antisense_pyrC_541_to_stop 21 40 + -3.79747 0.00978 0.471 ATCGAAATACCCTGGTCCTT Rv3681c_nonpal_1 sense_pyrC_548_to_stop 8 27 - -3.79747 0.00978 0.471 ATCGAAATACCCTGGTCCTT Rv0880_nonpal_1 antisense_accA1_595_from_start 2 25 + -12.0632 0.00979 0.218 CGCAACACAAACCGCTCCAGGAAT Rv0880_nonpal_1 sense_accA1_598_from_start 13 36 - -12.0632 0.00979 0.218 CGCAACACAAACCGCTCCAGGAAT Rv0472c_nonpal_1 antisense_metA_391_from_start 2 12 + -6.77885 0.00979 0.268 CGCCTGCACCT Rv0494_nonpal_2 antisense_Rv1251c_1309_from_start 10 24 + -11.2421 0.00979 1 CAGCGGCTCCAGCGC Rv3574_nonpal_1 10034_up_of_Rv3188 13 27 + -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 3353_up_of_Rv3179 13 27 + -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 13071_down_of_Rv3190c 13 27 + -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 8499_up_of_Rv3186 13 27 + -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 4992_down_of_Rv3180c 13 27 + -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 3360_up_of_Rv3179 21 35 - -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 8506_up_of_Rv3186 21 35 - -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 13078_down_of_Rv3190c 21 35 - -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 4999_down_of_Rv3180c 21 35 - -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv3574_nonpal_1 10041_up_of_Rv3188 21 35 - -4.02941 0.00979 0.35 GTAAACCGATTGGTG Rv0767c_nonpal_2 antisense_Rv1251c_1309_from_start 7 27 + -2.93671 0.00979 0.551 GTACAGCGGCTCCAGCGCCTT Rv0275c_nonpal_1 4999_down_of_Rv3180c 3 28 - -17.7115 0.00979 0.275 GATTGGTGTACTTTGTGCTTTGACGG Rv0275c_nonpal_1 13078_down_of_Rv3190c 3 28 - -17.7115 0.00979 0.275 GATTGGTGTACTTTGTGCTTTGACGG Rv0275c_nonpal_1 3360_up_of_Rv3179 3 28 - -17.7115 0.00979 0.275 GATTGGTGTACTTTGTGCTTTGACGG Rv0275c_nonpal_1 8506_up_of_Rv3186 3 28 - -17.7115 0.00979 0.275 GATTGGTGTACTTTGTGCTTTGACGG Rv0275c_nonpal_1 10041_up_of_Rv3188 3 28 - -17.7115 0.00979 0.275 GATTGGTGTACTTTGTGCTTTGACGG Rv0135c_pal_1 antisense_Rv1461_559_from_start 3 12 + -0.71875 0.0098 0.313 TTATTATCGC Rv0135c_pal_1 antisense_Rv1461_559_from_start 3 12 - -0.71875 0.0098 0.313 GCGATAATAA Rv0135c_pal_1 antisense_Rv1461_559_from_start 19 28 + -0.71875 0.0098 0.313 GGATTACTGT Rv0135c_pal_1 sense_Rv1461_552_from_start 20 29 + -0.71875 0.0098 0.313 ACAGTAATCC Rv0135c_pal_1 antisense_Rv1461_559_from_start 19 28 - -0.71875 0.0098 0.313 ACAGTAATCC Rv0135c_pal_1 sense_Rv1461_552_from_start 20 29 - -0.71875 0.0098 0.313 GGATTACTGT Rv0757_nonpal_1 sense_metA_384_from_start 1 21 + -3.39241 0.0098 0.613 GGGCTCAAGATTTCCGCTGAT Rv0767c_pal_1 sense_Rv1278_1158_to_stop 22 33 + 3 0.00981 0.989 AGGTCGCTGACC Rv0767c_pal_1 sense_Rv1278_1158_to_stop 22 33 - 3 0.00981 0.989 GGTCAGCGACCT Rv1404_nonpal_1 antisense_gca_467_from_start 9 34 + -2.425 0.00981 0.118 GTAAGACTTGTGATATTGATACGCCA Rv1404_nonpal_1 sense_gca_460_from_start 14 39 - -2.425 0.00981 0.118 GTAAGACTTGTGATATTGATACGCCA Rv2359_pal_1 sense_pks9_325_to_stop 20 40 + -18.1524 0.00981 0.18 AGATGGCTATCGGTTTGCCCG Rv2359_pal_1 sense_pks9_325_to_stop 20 40 - -18.1524 0.00981 0.18 CGGGCAAACCGATAGCCATCT Rv1049_nonpal_2 sense_metA_384_from_start 8 22 - -2.08 0.00981 0.691 GATCAGCGGAAATCT Rv1049_nonpal_2 antisense_metA_391_from_start 26 40 + -2.08 0.00981 0.691 GATCAGCGGAAATCT Rv1846c_nonpal_1 5189_up_of_Rv3186 7 28 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 9761_down_of_Rv3190c 7 28 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 1682_down_of_Rv3180c 7 28 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 6724_up_of_Rv3188 7 28 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 43_up_of_Rv3179 7 28 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 5195_up_of_Rv3186 13 34 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 9767_down_of_Rv3190c 13 34 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 49_up_of_Rv3179 13 34 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 6730_up_of_Rv3188 13 34 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 1688_down_of_Rv3180c 13 34 - -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 9760_down_of_Rv3190c 14 35 + -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 5188_up_of_Rv3186 14 35 + -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 6723_up_of_Rv3188 14 35 + -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 42_up_of_Rv3179 14 35 + -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1846c_nonpal_1 1681_down_of_Rv3180c 14 35 + -18.5426 0.00982 0.407 TATACTGATCGGTGTACTTATA Rv1423_pal_1 sense_Rv1278_1158_to_stop 1 12 + 2.15068 0.00982 1 CTGATGCGCTGG Rv1423_pal_1 sense_Rv1278_1158_to_stop 1 12 - 2.15068 0.00982 1 CCAGCGCATCAG Rv0678_nonpal_1 93_up_of_lpqG 10 24 + 2.34375 0.00982 0.331 AGGGCCCGTCGATGC Rv0195_nonpal_1 antisense_pks6_431_from_start 3 16 + -4.60638 0.00983 1 AGCATTCGTGAACC Rv0195_nonpal_1 antisense_pks6_430_from_start 3 16 + -4.60638 0.00983 1 AGCATTCGTGAACC Rv3736_pal_1 sense_bioB_253_to_stop 11 25 + 2.65 0.00983 1 CCGACCTGGAGGTAA Rv3736_pal_1 sense_bioB_253_to_stop 11 25 - 2.65 0.00983 1 TTACCTCCAGGTCGG Rv0117_nonpal_1 antisense_fadE7_121_to_stop 3 29 - -19.9615 0.00983 0.568 GGATATCGCTGGAGTACCCGGTCATCC Rv0117_nonpal_1 sense_fadE7_118_to_stop 9 35 + -19.9615 0.00983 0.568 GGATATCGCTGGAGTACCCGGTCATCC Rv0602c_pal_1 antisense_Rv0370c_389_from_start 6 13 + -3.79747 0.00983 0.189 ATGAGCAG Rv0602c_pal_1 antisense_Rv0370c_389_from_start 6 13 - -3.79747 0.00983 0.189 CTGCTCAT Rv0022c_nonpal_1 antisense_Rv0370c_389_from_start 7 21 + -1.26027 0.00983 0.257 TGAGCAGCACTGGAG Rv3488_nonpal_1 sense_mmpL4_1184_to_stop 8 21 - -7.30882 0.00984 0.464 TCCAGAAATCATCA Rv3488_nonpal_1 antisense_mmpL4_1187_to_stop 17 30 + -7.30882 0.00984 0.464 TCCAGAAATCATCA Rv1255c_nonpal_1 3360_up_of_Rv3179 1 20 - -6.68966 0.00984 0.465 TACTTTGTGCTTTGACGGTA Rv1255c_nonpal_1 8506_up_of_Rv3186 1 20 - -6.68966 0.00984 0.465 TACTTTGTGCTTTGACGGTA Rv1255c_nonpal_1 4999_down_of_Rv3180c 1 20 - -6.68966 0.00984 0.465 TACTTTGTGCTTTGACGGTA Rv1255c_nonpal_1 13078_down_of_Rv3190c 1 20 - -6.68966 0.00984 0.465 TACTTTGTGCTTTGACGGTA Rv1255c_nonpal_1 10041_up_of_Rv3188 1 20 - -6.68966 0.00984 0.465 TACTTTGTGCTTTGACGGTA Rv3574_pal_1 antisense_frdA_787_from_start 4 19 + 0.449275 0.00984 0.289 CGAGGTCGTAATCCTG Rv3574_pal_1 antisense_frdA_787_from_start 4 19 - 0.449275 0.00984 0.289 CAGGATTACGACCTCG Rv1473A_nonpal_2 antisense_Rv0370c_389_from_start 2 9 + -8.19178 0.00985 0.461 ATCGATGA Rv2788_nonpal_1 93_up_of_lpqG 12 39 + -37.093 0.00985 1 GGCCCGTCGATGCCAGTACCCCGAAATT Rv0472c_nonpal_1 sense_Rv1461_475_from_start 30 40 - -6.78846 0.00985 0.268 AAAATATGACT Rv2788_nonpal_2 sense_Rv2279_300_to_stop 2 29 - -27.5349 0.00986 0.558 TACTGAGATCCCCTATCCGTATGGTGGA Rv3249c_nonpal_2 antisense_fadE7_121_to_stop 13 27 + -0.586667 0.00986 0.721 GTACTCCAGCGATAT Rv3249c_nonpal_2 sense_fadE7_118_to_stop 11 25 - -0.586667 0.00986 0.721 GTACTCCAGCGATAT Rv2324_nonpal_1 sense_bioB_253_to_stop 13 31 - 2.24638 0.00986 0.368 CCGGCATTACCTCCAGGTC Rv1473A_nonpal_2 antisense_Rv2279_293_to_stop 8 15 - -8.26027 0.00986 0.461 ATCGATCC Rv1473A_nonpal_2 sense_Rv2279_300_to_stop 33 40 + -8.26027 0.00986 0.461 ATCGATCC Rv2021c_pal_1 antisense_cobK_311_from_start 8 22 + 2.64368 0.00987 0.859 GATGATGGCGGTACC Rv2021c_pal_1 antisense_cobK_311_from_start 8 22 - 2.64368 0.00987 0.859 GGTACCGCCATCATC Rv2021c_pal_1 sense_cobK_304_from_start 26 40 + 2.64368 0.00987 0.859 GGTACCGCCATCATC Rv2021c_pal_1 sense_cobK_304_from_start 26 40 - 2.64368 0.00987 0.859 GATGATGGCGGTACC Rv1719_nonpal_2 antisense_fadE7_121_to_stop 2 22 - -5.62353 0.00988 1 GCTGGAGTACCCGGTCATCCG Rv1719_nonpal_2 sense_fadE7_118_to_stop 16 36 + -5.62353 0.00988 1 GCTGGAGTACCCGGTCATCCG Rv0691c_nonpal_2 sense_pyrC_548_to_stop 9 32 + -45.25 0.00988 0.669 AGGACCAGGGTATTTCGATCACCG Rv0691c_nonpal_2 antisense_pyrC_541_to_stop 16 39 - -45.25 0.00988 0.669 AGGACCAGGGTATTTCGATCACCG Rv1219c_pal_1 antisense_Rv1461_416_from_start 24 32 + -0.531646 0.00988 0.554 TACTAATCT Rv1219c_pal_1 antisense_Rv1461_416_from_start 24 32 - -0.531646 0.00988 0.554 AGATTAGTA Rv0047c_pal_1 sense_Rv1278_1158_to_stop 1 12 + 2.71212 0.00988 0.466 CTGATGCGCTGG Rv0047c_pal_1 sense_Rv1278_1158_to_stop 1 12 - 2.71212 0.00988 0.466 CCAGCGCATCAG Rv0275c_nonpal_1 sense_Rv1461_475_from_start 12 37 + -17.7596 0.00988 0.275 GGATCTGGAGGCTCAAGGAGTCATAT Rv0275c_nonpal_1 antisense_Rv1461_472_from_start 1 26 - -17.7596 0.00988 0.275 GGATCTGGAGGCTCAAGGAGTCATAT Rv2788_nonpal_1 antisense_Rv2963_530_to_stop 4 31 - -37.1279 0.0099 1 GGTACCCGAATCGTTCTGGCAGAGCTTC Rv0022c_pal_1 1662_up_of_Rv2018 10 31 + -0.135135 0.00991 0.197 GGCCTTCTCCAGTGAAATTGAT Rv0022c_pal_1 1662_up_of_Rv2018 10 31 - -0.135135 0.00991 0.197 ATCAATTTCACTGGAGAAGGCC Rv3765c_nonpal_1 sense_PPE34_3066_to_stop 21 40 + -12.5474 0.00991 0.654 AGATTACGTGACAGTGAGTG Rv3765c_nonpal_1 sense_PPE34_1664_from_start 21 40 + -12.5474 0.00991 0.654 AGATTACGTGACAGTGAGTG Rv3765c_nonpal_1 sense_PPE34_1439_from_start 21 40 + -12.5474 0.00991 0.654 AGATTACGTGACAGTGAGTG Rv2021c_pal_1 93_up_of_lpqG 17 31 + 2.63218 0.00991 0.859 GTCGATGCCAGTACC Rv2021c_pal_1 93_up_of_lpqG 17 31 - 2.63218 0.00991 0.859 GGTACTGGCATCGAC Rv0081_nonpal_1 sense_PPE24_1577_to_stop 5 19 + -3.73333 0.00992 0.533 GACGATACCCGCGGG Rv0081_nonpal_1 sense_PPE24_1352_to_stop 5 19 + -3.73333 0.00992 0.533 GACGATACCCGCGGG Rv0081_nonpal_1 sense_PPE24_1277_to_stop 5 19 + -3.73333 0.00992 0.533 GACGATACCCGCGGG Rv1956_pal_1 9767_down_of_Rv3190c 3 10 + -2.65116 0.00992 0.256 CAGTGTCG Rv1956_pal_1 49_up_of_Rv3179 3 10 + -2.65116 0.00992 0.256 CAGTGTCG Rv1956_pal_1 1688_down_of_Rv3180c 3 10 + -2.65116 0.00992 0.256 CAGTGTCG Rv1956_pal_1 6730_up_of_Rv3188 3 10 + -2.65116 0.00992 0.256 CAGTGTCG Rv1956_pal_1 5195_up_of_Rv3186 3 10 + -2.65116 0.00992 0.256 CAGTGTCG Rv1956_pal_1 antisense_cobK_311_from_start 7 14 + -2.65116 0.00992 0.256 CGATGATG Rv1956_pal_1 9767_down_of_Rv3190c 3 10 - -2.65116 0.00992 0.256 CGACACTG Rv1956_pal_1 49_up_of_Rv3179 3 10 - -2.65116 0.00992 0.256 CGACACTG Rv1956_pal_1 1688_down_of_Rv3180c 3 10 - -2.65116 0.00992 0.256 CGACACTG Rv1956_pal_1 6730_up_of_Rv3188 3 10 - -2.65116 0.00992 0.256 CGACACTG Rv1956_pal_1 5195_up_of_Rv3186 3 10 - -2.65116 0.00992 0.256 CGACACTG Rv1956_pal_1 antisense_cobK_311_from_start 7 14 - -2.65116 0.00992 0.256 CATCATCG Rv3488_nonpal_1 antisense_aldA_642_from_start 24 37 - -7.35294 0.00992 0.464 TGTCAACATCGTCA Rv2034_nonpal_1 4999_down_of_Rv3180c 7 17 + 2.32353 0.00993 0.384 CAAAGCACAAA Rv2034_nonpal_1 13078_down_of_Rv3190c 7 17 + 2.32353 0.00993 0.384 CAAAGCACAAA Rv2034_nonpal_1 8506_up_of_Rv3186 7 17 + 2.32353 0.00993 0.384 CAAAGCACAAA Rv2034_nonpal_1 3360_up_of_Rv3179 7 17 + 2.32353 0.00993 0.384 CAAAGCACAAA Rv2034_nonpal_1 10041_up_of_Rv3188 7 17 + 2.32353 0.00993 0.384 CAAAGCACAAA Rv0047c_nonpal_1 antisense_mmpL4_1187_to_stop 11 25 + 0.890625 0.00994 0.654 TTGGTCTCCAGAAAT Rv0047c_nonpal_1 sense_mmpL4_1184_to_stop 13 27 - 0.890625 0.00994 0.654 TTGGTCTCCAGAAAT Rv3736_nonpal_1 sense_PE_PGRS57_112_from_start 13 27 - 1.63768 0.00994 0.638 CAGCACCTGCGTGGT Rv3736_nonpal_1 sense_PE_PGRS54_112_from_start 13 27 - 1.63768 0.00994 0.638 CAGCACCTGCGTGGT Rv0767c_nonpal_2 sense_Rv1461_475_from_start 13 33 + -3 0.00994 0.551 GATCTGGAGGCTCAAGGAGTC Rv0767c_nonpal_2 antisense_Rv1461_472_from_start 5 25 - -3 0.00994 0.551 GATCTGGAGGCTCAAGGAGTC Rv3249c_nonpal_2 sense_Rv1278_1158_to_stop 18 32 + -0.626667 0.00995 0.721 GGAGAGGTCGCTGAC Rv3557c_nonpal_1 sense_pks9_325_to_stop 2 21 - -20.0385 0.00995 0.341 CTGGAGACGATTGCGTAGTT Rv1255c_pal_1 sense_mptA_23_from_start 7 32 + -1.21839 0.00996 0.544 CGAGCCATGCTCCAGCGGTTGATTTG Rv1255c_pal_1 37_up_of_Rv2172c 7 32 + -1.21839 0.00996 0.544 CGAGCCATGCTCCAGCGGTTGATTTG Rv1255c_pal_1 sense_mptA_23_from_start 7 32 - -1.21839 0.00996 0.544 CAAATCAACCGCTGGAGCATGGCTCG Rv1255c_pal_1 37_up_of_Rv2172c 7 32 - -1.21839 0.00996 0.544 CAAATCAACCGCTGGAGCATGGCTCG Rv1816_nonpal_1 antisense_Rv0370c_389_from_start 3 19 + 1 0.00996 0.431 TCGATGAGCAGCACTGG Rv0022c_nonpal_1 42_up_of_Rv3179 11 25 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 6723_up_of_Rv3188 11 25 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 1681_down_of_Rv3180c 11 25 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 5188_up_of_Rv3186 11 25 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 9760_down_of_Rv3190c 11 25 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 36_up_of_Rv3179 17 31 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 6717_up_of_Rv3188 17 31 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 5182_up_of_Rv3186 17 31 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 1675_down_of_Rv3180c 17 31 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 9754_down_of_Rv3190c 17 31 - -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 6724_up_of_Rv3188 17 31 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 5189_up_of_Rv3186 17 31 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 1682_down_of_Rv3180c 17 31 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 9761_down_of_Rv3190c 17 31 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 43_up_of_Rv3179 17 31 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 6730_up_of_Rv3188 23 37 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 5195_up_of_Rv3186 23 37 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 9767_down_of_Rv3190c 23 37 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 49_up_of_Rv3179 23 37 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv0022c_nonpal_1 1688_down_of_Rv3180c 23 37 + -1.31507 0.00996 0.257 CCGATCAGTATACAA Rv1219c_nonpal_1 sense_pks6_424_from_start 4 18 + -2.79747 0.00996 0.629 TGTGCGATAACAGCG Rv1219c_nonpal_1 sense_pks6_423_from_start 4 18 + -2.79747 0.00996 0.629 TGTGCGATAACAGCG Rv0023_pal_2 antisense_frdA_787_from_start 9 24 + 0.467532 0.00996 0.447 TCGTAATCCTGGAGGT Rv0023_pal_2 antisense_frdA_787_from_start 9 24 - 0.467532 0.00996 0.447 ACCTCCAGGATTACGA Rv0880_nonpal_1 antisense_gca_467_from_start 3 26 - -12.1579 0.00997 0.22 CAATATCACAAGTCTTACGGCATG Rv0302_nonpal_1 antisense_accA1_595_from_start 8 22 - 1.2029 0.00997 0.472 CCTGGAGCGGTTTGT Rv0302_nonpal_1 sense_accA1_598_from_start 16 30 + 1.2029 0.00997 0.472 CCTGGAGCGGTTTGT Rv0302_nonpal_2 sense_PE_PGRS57_112_from_start 17 27 - -3.70513 0.00998 1 CAGCACCTGCG Rv0302_nonpal_2 sense_PE_PGRS54_112_from_start 17 27 - -3.70513 0.00998 1 CAGCACCTGCG Rv3488_pal_2 antisense_Rv1461_559_from_start 4 11 + -8.77907 0.00998 0.59 TATTATCG Rv3488_pal_2 sense_accA1_598_from_start 9 16 + -8.77907 0.00998 0.59 CGCTATTC Rv3488_pal_2 antisense_Rv1461_559_from_start 4 11 - -8.77907 0.00998 0.59 CGATAATA Rv3488_pal_2 sense_accA1_598_from_start 9 16 - -8.77907 0.00998 0.59 GAATAGCG Rv3488_pal_2 antisense_accA1_595_from_start 22 29 + -8.77907 0.00998 0.59 GAATAGCG Rv3488_pal_2 antisense_accA1_595_from_start 22 29 - -8.77907 0.00998 0.59 CGCTATTC Rv0465c_pal_2 antisense_frdA_787_from_start 8 15 + -2.17722 0.00998 1 GTCGTAAT Rv0465c_pal_2 antisense_frdA_787_from_start 8 15 - -2.17722 0.00998 1 ATTACGAC Rv2989_pal_1 1662_up_of_Rv2018 4 20 + -4.87013 0.00998 1 TGAATCGGCCTTCTCCA Rv2989_pal_1 1662_up_of_Rv2018 4 20 - -4.87013 0.00998 1 TGGAGAAGGCCGATTCA Rv2989_nonpal_2 sense_pks6_424_from_start 6 20 - -6.71264 0.00999 1 TACGCTGTTATCGCA Rv2989_nonpal_2 sense_pks6_423_from_start 6 20 - -6.71264 0.00999 1 TACGCTGTTATCGCA Rv0472c_nonpal_1 7_up_of_Rv1049 25 35 - -6.85577 0.00999 0.269 TAGCTACACGA Rv0472c_nonpal_1 4_up_of_Rv1049 3 13 + -6.85577 0.00999 0.269 TAGCTACACGA Rv3557c_nonpal_1 43_up_of_Rv3179 11 30 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 9761_down_of_Rv3190c 11 30 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 6724_up_of_Rv3188 11 30 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 5189_up_of_Rv3186 11 30 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 1682_down_of_Rv3180c 11 30 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 9767_down_of_Rv3190c 17 36 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 6730_up_of_Rv3188 17 36 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 5195_up_of_Rv3186 17 36 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 49_up_of_Rv3179 17 36 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 1688_down_of_Rv3180c 17 36 + -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 9760_down_of_Rv3190c 12 31 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 42_up_of_Rv3179 12 31 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 6723_up_of_Rv3188 12 31 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 1681_down_of_Rv3180c 12 31 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 5188_up_of_Rv3186 12 31 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 9754_down_of_Rv3190c 18 37 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 36_up_of_Rv3179 18 37 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 6717_up_of_Rv3188 18 37 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 5182_up_of_Rv3186 18 37 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv3557c_nonpal_1 1675_down_of_Rv3180c 18 37 - -20.0577 0.00999 0.341 AGTACACCGATCAGTATACA Rv0339c_nonpal_1 antisense_aldA_642_from_start 16 29 + -0.804598 0.01 1 GCTGGAGGTGACGA