#the list of genes downregulated over time in mouse limb buds being upregulated in bamboo shark fin buds over time (related to Figure 2-figure supplement 1B) COQ3 0,0,0:c1 TLCD1 0,0,0:c1 GGACT 0,0,0:c1 SPIRE2 0,0,0:c1 SLC16A6 0,0,0:c1 UPP1 0,0,0:c1 BPNT1 122,0,139:c2 PSPH 122,0,139:c2 CISD3 122,0,139:c2 MRPS6 122,0,139:c2 MRPS18B 122,0,139:c2 TEFM 122,0,139:c2 SULT2B1 122,0,139:c2 HIST2H2AC 122,0,139:c2 MRPL12 122,0,139:c2 SNX5 122,0,139:c2 SAR1B 122,0,139:c2 EIF4EBP1 122,0,139:c2 MTFP1 122,0,139:c2 BNIP3 122,0,139:c2 TYW5 122,0,139:c2 PNO1 122,0,139:c2 PEX7 122,0,139:c2 RPS27A 88,0,159:c3 RPL32 88,0,159:c3 RPL34 88,0,159:c3 NME2 88,0,159:c3 FAM162A 88,0,159:c3 PGP 88,0,159:c3 BOLA1 88,0,159:c3 RPS14 88,0,159:c3 RPS17 88,0,159:c3 RPL37RT 88,0,159:c3 MRPL58 88,0,159:c3 RPS19BP1 0,0,197:c4 MTX2 0,0,197:c4 ANKRD16 0,0,197:c4 POLR2D 0,0,197:c4 UQCC2 0,0,197:c4 RPL12 0,0,197:c4 EMC6 0,0,197:c4 OSGEPL1 0,0,197:c4 VEGFD 0,0,197:c4 RPLP1 0,0,197:c4 RPS11 0,0,197:c4 RPS3 0,0,197:c4 RPL5 0,0,197:c4 NUDT6 0,84,221:c5 AP1M2 0,84,221:c5 TIPARP 0,84,221:c5 DHRS7B 0,84,221:c5 SFT2D1 0,84,221:c5 F11R 0,84,221:c5 MANF 0,84,221:c5 RBM7 0,84,221:c5 CISD2 0,149,221:c6 SEC13 0,149,221:c6 LHPP 0,149,221:c6 COMMD6 0,149,221:c6 MRPS36 0,149,221:c6 RPS16 0,149,221:c6 TBXA2R 0,149,221:c6 RAP1A 0,149,221:c6 PTP4A1 0,149,221:c6 TMED2 0,149,221:c6 ATP6V0B 0,149,221:c6 SDHAF2 0,149,221:c6 EIF3J1 0,149,221:c6 SELENOK 0,149,221:c6 PON2 0,149,221:c6 MRPL34 0,170,168:c7 RNF181 0,170,168:c7 SNRNP27 0,170,168:c7 RPL18 0,170,168:c7 EMC4 0,170,168:c7 MRPS21 0,170,168:c7 RPS9 0,170,168:c7 RPS19 0,170,168:c7 ATP5F1 0,170,168:c7 SPR 0,170,168:c7 1700037H04RIK 0,170,168:c7 AUH 0,170,168:c7 MRPL43 0,170,168:c7 RPS15 0,170,168:c7 RPL7A 0,170,168:c7 RPL10 0,170,168:c7 PSMB4 0,170,168:c7 RPL15 0,170,168:c7 RACK1 0,170,168:c7 EEF1B2 0,170,168:c7 B9D1 0,166,104:c8 RPL21 0,166,104:c8 MRPS25 0,166,104:c8 PRDX4 0,166,104:c8 ARPC4 0,166,104:c8 HMGB3 0,166,104:c8 FOXRED1 0,166,104:c8 TMX1 0,166,104:c8 LRRC40 0,166,104:c8 MNAT1 0,166,104:c8 MRPS9 0,166,104:c8 PTDSS2 0,166,104:c8 LAMTOR1 0,166,104:c8 KCMF1 0,166,104:c8 RPL8 0,166,104:c8 RPL22 0,166,104:c8 RNF7 0,167,0:c9 MRPL54 0,167,0:c9 MRPL40 0,167,0:c9 ALAD 0,167,0:c9 MRPS18A 0,167,0:c9 RPL24 0,167,0:c9 TRAF3IP2 0,167,0:c9 RCC1 0,207,0:c10 LSM4 0,207,0:c10 DERA 0,207,0:c10 NMNAT1 0,207,0:c10 MED8 0,207,0:c10 COPS5 0,207,0:c10 TIMMDC1 0,207,0:c10 STARD3NL 0,207,0:c10 RPS15A 0,207,0:c10 CCDC86 0,207,0:c10 MCEE 0,207,0:c10 GINS4 0,207,0:c10 APOPT1 0,207,0:c10 RPS8 0,207,0:c10 NDUFS4 0,207,0:c10 FAU 0,207,0:c10 RPS6 0,207,0:c10 TBCA 0,207,0:c10 CPZ 0,247,0:c11 POPDC2 0,247,0:c11 GRB7 0,247,0:c11 ACYP2 0,247,0:c11 MYL2 0,247,0:c11 HAPLN1 0,247,0:c11 AQP3 0,247,0:c11 DKK4 0,247,0:c11 SLC7A14 0,247,0:c11 RABGGTB 176,255,0:c12 ACSL4 176,255,0:c12 H2 176,255,0:c12 METRN 176,255,0:c12 CCDC160 176,255,0:c12 DUSP5 176,255,0:c12 SLC7A3 176,255,0:c12 PPP1R14A 176,255,0:c12 SPEG 176,255,0:c12 TCF7 176,255,0:c12 MEOX1 176,255,0:c12 CASC4 176,255,0:c12 NUDT19 176,255,0:c12 TMEM37 176,255,0:c12 EDAR 176,255,0:c12 HGF 240,234,0:c13 FGF8 240,234,0:c13 FOXD1 240,234,0:c13 TGM2 240,234,0:c13 NDUFA4L2 240,234,0:c13 PLSCR1 240,234,0:c13 CITED4 240,234,0:c13 TFRC 240,234,0:c13 KRT8 240,234,0:c13 GJB3 240,234,0:c13 PSAT1 240,234,0:c13 TAPBPL 240,234,0:c13 S100A1 240,234,0:c13 PLEKHA2 240,234,0:c13 GPNMB 240,234,0:c13 PPP2R2C 240,234,0:c13 PHOSPHO1 240,234,0:c13 SRMS 240,234,0:c13 GPX3 240,234,0:c13 CDK18 255,189,0:c14 ATL2 255,189,0:c14 SSR3 255,189,0:c14 ATPIF1 255,189,0:c14 ARHGEF16 255,189,0:c14 TMEM120A 255,189,0:c14 SLC30A6 255,189,0:c14 FBXO6 255,189,0:c14 PHGDH 255,189,0:c14 GTF3C6 255,189,0:c14 METTL22 255,189,0:c14 TPD52L2 255,189,0:c14 ACADS 255,81,0:c15 RELT 255,81,0:c15 IMMP1L 255,81,0:c15 BBS5 255,81,0:c15 IMPACT 255,81,0:c15 GARS 255,81,0:c15 CCDC124 255,81,0:c15 POP7 255,81,0:c15 MPDU1 255,81,0:c15 RABGGTA 255,81,0:c15 MED29 255,81,0:c15 NDUFA13 255,81,0:c15 PSMB5 255,81,0:c15 GPANK1 255,81,0:c15 NDUFS6 255,81,0:c15 CYB5R4 255,81,0:c15 PDCD2L 255,81,0:c15 UBXN1 233,0,0:c16 CCDC115 233,0,0:c16 MRPL52 233,0,0:c16 TANGO2 233,0,0:c16 ATG12 233,0,0:c16 DNAJB6 233,0,0:c16 SERPINF1 233,0,0:c16 ASS1 233,0,0:c16 RPS24 233,0,0:c16 HRAS 233,0,0:c16 SNAP23 233,0,0:c16 TARS2 233,0,0:c16 M6PR 233,0,0:c16 COQ4 233,0,0:c16 SOWAHB 207,0,0:c17 PM20D1 207,0,0:c17 TMC4 207,0,0:c17 SLC25A21 207,0,0:c17 TTPA 207,0,0:c17 MATN3 207,0,0:c17 USH1C 207,0,0:c17 ALDOA 207,0,0:c17 PRDX6 207,0,0:c17 UPK1A 207,0,0:c17 MPZL3 207,0,0:c17 LBX1 207,0,0:c17 CHST7 207,0,0:c17 JUNB 204,204,204:c18 PSMB10 204,204,204:c18 SLC35G1 204,204,204:c18 BCAT1 204,204,204:c18 RPL35 204,204,204:c18 CPOX 204,204,204:c18 GYG 204,204,204:c18 IKZF1 204,204,204:c18 HOXC6 204,204,204:c18 KLF15 204,204,204:c18 DMD 204,204,204:c18