TE_type chr start end type confirmation isolate (pangenome name) isolate (illumina name) RLG_Sol_chr14_642345_642750_nonref chr14 642345 642750 RLG_Sol confirmed 1A5 CH99_SW5 RLG_Luna_chr2_1904735_1905141_nonref chr2 1904735 1905141 RLG_Luna confirmed 1A5 CH99_SW5 RLG_Luna_chr4_971893_972299_nonref chr4 971893 972299 RLG_Luna confirmed 1A5 CH99_SW5 RLG_Sol_chr7_2534724_2535129_nonref chr7 2534724 2535129 RLG_Sol confirmed 1A5 CH99_SW5 DHH_Ada_chr1_2154401_2154810_nonref chr1 2154401 2154810 DHH_Ada confirmed 1E4 CH99_SW39 RLX-TRIM_Jari_chr18_558344_563087_nonref chr18 558344 563087 RLX-TRIM_Jari confirmed 1E4 CH99_SW39 RLG_Sol_chr20_286824_287229_nonref chr20 286824 287229 RLG_Sol confirmed 3D1 CH99_3D1 RLG_Sol_chr11_1296480_1296885_nonref chr11 1296480 1296885 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr20_229763_230168_nonref chr20 229763 230168 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr21_211651_212056_nonref chr21 211651 212056 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr3_1353647_1354052_nonref chr3 1353647 1354052 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLC_Deimos_chr6_2280631_2281037_nonref chr6 2280631 2281037 RLC_Deimos confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr7_1267185_1267590_nonref chr7 1267185 1267590 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr7_1283520_1283925_nonref chr7 1283520 1283925 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLC_Deimos_chr7_1586070_1586476_nonref chr7 1586070 1586476 RLC_Deimos confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr8_1799241_1799646_nonref chr8 1799241 1799646 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr9_452281_452686_nonref chr9 452281 452686 RLG_Sol confirmed Aus01_1H8 AUS01_1H8 RLG_Sol_chr3_2808150_2808555_nonref chr3 2808150 2808555 RLG_Sol confirmed 1A5 CH99_SW5 RLG_Sol_chr20_315477_315882_nonref chr20 315477 315882 RLG_Sol confirmed 3D1 CH99_3D1 RLG_Luna_chr20_323710_324116_nonref chr20 323710 324116 RLG_Luna confirmed 3D7 CH99_3D7 DHH_Ada_chr7_167513_167923_nonref chr7 167513 167923 DHH_Ada confirmed 3D7 CH99_3D7 RLG_Sol_chr14_295344_295749_nonref chr14 295344 295749 RLG_Sol confirmed OregS90_a15_4A_10 ORE90Ste_a154A10 RLG_Aurora_chr13_769466_769871_nonref chr13 769466 769871 RLG_Aurora not_confirmed 1A5 CH99_SW5 DTX_Kolyma_chr15_68723_69127_nonref chr15 68723 69127 DTX_Kolyma not_confirmed 1A5 CH99_SW5 DHH_Ada_chr1_2218297_2218707_nonref chr1 2218297 2218707 DHH_Ada not_confirmed 1E4 CH99_SW39 RLG_Aurora_chr1_2468684_2469089_nonref chr1 2468684 2469089 RLG_Aurora not_confirmed 1E4 CH99_SW39 RLC_Deimos_chr14_684500_684906_nonref chr14 684500 684906 RLC_Deimos not_confirmed 3D1 CH99_3D1 RLG_Aurora_chr15_321136_321541_nonref chr15 321136 321541 RLG_Aurora not_confirmed 3D1 CH99_3D1 RLG_Sol_chr14_293016_293421_nonref chr14 293016 293421 RLG_Sol not_confirmed 3D7 CH99_3D7 DHH_Ada_chr6_2451802_2452212_nonref chr6 2451802 2452212 DHH_Ada not_confirmed ISY92_Ar4f ISR92_Ar_4f RLC_Deimos_chr2_2380349_2380755_nonref chr2 2380349 2380755 RLC_Deimos not_confirmed OregS90_a15_4A_10 ORE90Ste_a154A10