#Contains_Novel_or_Only_Known(Annotated)_Junctions	as_event_type	gene_name	chr	strand	exclusion_junctions	inclusion_junctions	exclusion_exons	inclusion_exons	intron-exon_junctions	neighboring_constitutive_exons	SRR2566272	SRR2566266	SRR2566260	SRR2566231	SRR2566232	SRR2566233	SRR2566262	SRR2566268	SRR2566256	SRR2566189	SRR2566190	SRR2566191	SRR2566263	SRR2566269	SRR2566257	SRR2566192	SRR2566193	SRR2566194	SRR2566264	SRR2566270	SRR2566258	SRR2566195	SRR2566196	SRR2566197	SRR2566265	SRR2566271	SRR2566259	SRR2566213	SRR2566214	SRR2566215	SRR2566267	SRR2566255	SRR2566261	SRR2566183	SRR2566184	SRR2566185	set1_med	set2_med	delta_val	raw_pval	corrected_pval
N	jcn_only_AA	SCN1B	chr19	+	chr19:35524644-35530020;chr19:35524644-35528066;chr19:35524644-35530101	chr19:35524644-35525948		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		10.23	0.00	6.08	10.81	0.00	4.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	5.26	0.00	1.47	0.00	8.82	0.00	18.92	6.12	0.00	2.04	6.82	0.00	8.47	4.92	2.56	0.00	4.84	8.20	10.62	0.00	5.88	0.00	6.25	0.00	8.34	8.34	0.020456	0.549110
K	alternative_acceptor	RPL22L1	chr3	-	chr3:170585924-170586086	chr3:170585991-170586086		chr3:170585924-170585990	chr3:170585923-170585924		50.00	55.56	36.84	41.38	42.31	42.11	13.56	40.00	56.25	18.37	11.90	5.00	11.48	11.11	52.94	12.04	11.90	6.06	48.57	42.86	20.34	44.44	52.38	44.44	59.57	30.77	54.55	26.92	33.33	33.33	57.14	61.54	43.33	46.15	38.71	31.82	45.95	41.43	-4.52	0.997729	1.000000
K	intron_retention	UCK1	chr9	-	chr9:134404426-134404514				chr9:134404425-134404426;chr9:134404514-134404515		0.00	0.00	2.86	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.52	0.00	0.00	0.00	NA	0.00	0.00	3.57	0.00	4.76	0.00	3.33	2.08	NA	0.00	2.86	0.00	0.00	0.00	0.00	0.480646	1.000000
K	intron_retention	LRRC75A-AS1	chr17	+	chr17:16344445-16344681				chr17:16344444-16344445;chr17:16344681-16344682		0.00	0.00	5.26	1.10	1.23	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.00	0.00	0.93	0.36	0.00	1.28	7.14	2.90	3.92	1.36	2.30	0.00	NA	0.00	1.05	1.01	0.91	5.00	9.30	3.26	2.31	0.80	0.63	0.13	0.00	-0.13	0.864495	1.000000
K	intron_retention	MGAT1	chr5	-	chr5:180220098-180230601				chr5:180220097-180220098;chr5:180230601-180230602		3.45	0.00	3.95	NA	4.76	NA	0.00	1.53	0.00	2.38	0.00	0.00	0.70	0.00	0.00	0.00	0.00	0.00	NA	6.56	0.00	7.69	1.16	NA	11.54	10.00	1.30	4.35	0.00	NA	14.29	13.73	0.00	11.32	5.08	30.30	0.00	5.00	5.00	0.577465	1.000000
K	intron_retention	ARHGDIA	chr17	-	chr17:79827113-79827205				chr17:79827112-79827113;chr17:79827205-79827206		2.99	2.55	2.70	0.93	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.31	0.00	0.33	0.00	0.00	0.00	0.00	0.00	1.63	1.63	1.44	0.59	1.45	2.56	1.06	0.64	0.00	0.34	0.78	7.69	4.14	3.70	0.35	0.37	1.10	1.27	1.34	0.07	0.886800	1.000000
N	alternative_acceptor	TYMP	chr22	-	chr22:50968045-50968332;chr22:50968177-50968332;chr22:50968149-50968332;chr22:50968184-50968332;chr22:50966175-50968332	chr22:50968161-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		29.41	38.46	32.41	25.00	28.36	29.09	17.11	18.68	18.25	18.49	23.53	18.32	19.44	19.79	19.54	18.87	19.62	18.54	33.33	27.76	24.36	28.97	30.65	29.61	31.46	28.36	27.97	27.67	25.45	24.43	30.95	27.91	35.06	29.80	34.62	31.79	32.39	28.06	-4.33	0.448166	0.755217
K	jcn_only_AA	DDX3X	chrX	+	chrX:41206705-41207112	chrX:41206705-41206892		chrX:41206893-41207112	chrX:41207112-41207113		96.92	100.00	96.52	100.00	100.00	83.02	100.00	97.16	100.00	96.86	93.89	97.98	96.49	98.15	97.20	98.01	100.00	97.79	100.00	95.28	91.67	100.00	100.00	100.00	100.00	94.55	96.75	100.00	100.00	89.47	92.73	93.75	100.00	93.68	100.00	94.28	100.00	96.10	-3.90	0.005602	0.450187
N	jcn_only_AD	AGPAT2	chr9	-	chr9:139572009-139581627	chr9:139572009-139580529		chr9:139580530-139581627	chr9:139581627-139581628		2.44	5.00	0.00	NA	0.00	NA	0.00	2.22	0.00	0.00	0.00	NA	3.12	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.57	0.00	NA	0.00	NA	2.56	0.00	4.17	0.00	0.00	0.00	1.56	2.33	0.77	0.828881	0.923322
N	jcn_only_AA	ELMO3	chr16	+	chr16:30666742-30666848;chr16:30666742-30666834	chr16:30666742-30666822		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		75.51	77.42	89.39	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	81.13	83.02	92.98	91.30	100.00	100.00	96.88	91.43	90.48	100.00	94.23	96.67	80.95	85.71	91.23	83.72	95.56	90.70	94.06	87.22	-6.83	0.660225	0.848430
N	alternative_acceptor	AGRN	chr1	+	chr1:989358-989827	chr1:989358-989430		chr1:989431-989827	chr1:989827-989828		4.08	1.43	4.23	4.00	3.57	3.12	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	1.27	2.56	5.00	0.00	0.00	5.41	5.56	4.17	6.82	9.09	4.00	5.13	1.92	4.65	3.57	2.94	7.63	7.04	0.00	20.00	13.51	10.79	0.00	4.61	4.61	0.052919	0.570243
N	jcn_only_AA	COX7A2L	chr2	-	chr2:42562886-42588229	chr2:42580484-42588229		chr2:42562886-42580483	chr2:42562885-42562886		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	75.00	100.00	100.00	100.00	98.06	100.00	88.89	100.00	100.00	100.00	97.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.212014	0.663989
K	intron_retention	GMPR2	chr14	+	chr14:24707976-24708111				chr14:24707975-24707976;chr14:24708111-24708112		100.00	82.76	100.00	100.00	100.00	100.00	95.24	95.24	95.24	96.97	92.31	93.55	95.52	95.00	96.88	95.65	92.86	100.00	98.15	97.56	96.92	100.00	94.12	100.00	100.00	87.23	97.14	100.00	100.00	92.59	100.00	98.31	100.00	100.00	100.00	100.00	96.84	96.40	-0.44	0.999122	1.000000
N	jcn_only_AA	KLC1,RP11-73M18.2	chr14	+	chr14:104143861-104145720;chr14:104143861-104145744	chr14:104143861-104145645		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		0.00	0.00	5.15	5.08	1.90	2.47	5.48	5.26	4.40	5.95	2.11	0.00	2.83	10.34	3.60	4.85	2.42	1.52	1.37	1.39	4.31	1.89	5.49	0.00	0.00	4.95	4.85	4.69	6.36	6.85	0.00	2.65	0.00	0.89	5.05	2.48	0.69	3.17	2.48	0.307687	0.663989
N	jcn_only_AA	ABTB1	chr3	+	chr3:127391925-127393210;chr3:127391925-127393187	chr3:127391925-127393233		chr3:127393188-127393210;chr3:127393211-127393233	chr3:127393210-127393211;chr3:127393233-127393234		90.00	88.57	66.67	NA	84.21	NA	90.00	83.02	81.82	77.78	77.78	81.25	86.96	86.05	88.46	83.33	90.32	NA	90.00	85.71	NA	60.00	73.53	70.00	100.00	81.25	83.33	75.00	81.82	75.00	88.00	84.38	90.00	70.00	82.35	80.00	90.00	85.88	-4.12	0.047753	0.663989
N	alternative_acceptor	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144853280-144854164;chr1:144852444-144854164;chr1:144853271-144854164	chr1:144852500-144854164		chr1:144852444-144852499;chr1:144852500-144853270;chr1:144853271-144853279	chr1:144852443-144852444;chr1:144852499-144852500;chr1:144853270-144853271		93.44	100.00	88.78	92.11	100.00	90.91	90.00	94.00	91.67	90.74	93.33	85.25	100.00	86.27	84.71	87.10	81.82	87.72	100.00	91.67	92.31	95.60	92.86	92.81	NA	93.40	87.74	89.36	92.59	89.92	89.62	89.02	68.42	86.43	90.20	88.24	100.00	92.53	-7.47	0.965780	0.991031
K	alternative_acceptor	RAD23A,ZNF568	chr19	+	chr19:13059974-13060091	chr19:13059974-13060088		chr19:13060089-13060091	chr19:13060091-13060092		28.85	24.18	30.77	28.30	28.57	35.00	29.07	33.96	36.36	39.78	40.22	32.00	30.28	38.36	34.62	35.48	38.60	27.87	24.44	21.88	25.97	30.19	26.79	38.10	33.33	36.96	32.26	29.58	33.75	28.30	32.69	30.26	21.67	31.17	28.92	35.44	26.76	33.33	6.57	0.138310	0.635210
N	alternative_donor	IKBKE	chr1	+	chr1:206664192-206664980	chr1:206664215-206664980		chr1:206664192-206664214	chr1:206664191-206664192		1.61	9.09	1.47	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	1.59	0.00	NA	0.00	NA	NA	0.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.41	0.41	0.533507	0.776740
K	intron_retention		chr17	-	chr17:7529933-7530070				chr17:7529932-7529933;chr17:7530070-7530071		8.81	11.17	17.11	14.89	8.61	8.04	2.04	0.81	0.00	0.00	0.00	4.55	4.65	3.36	1.79	2.13	0.00	0.00	8.21	8.33	9.85	12.50	6.35	14.29	13.44	9.84	12.64	10.96	5.07	6.31	16.67	16.07	14.06	11.39	8.33	11.90	9.69	8.57	-1.12	0.980696	1.000000
N	intron_retention	SLCO3A1	chr15	+	chr15:92706229-92706525				chr15:92706228-92706229;chr15:92706525-92706526		100.00	100.00	92.98	91.07	88.24	82.90	100.00	89.36	89.83	90.00	88.89	86.21	100.00	91.67	81.13	95.24	92.31	84.62	87.50	93.33	88.71	100.00	93.33	93.69	100.00	85.48	86.36	84.00	88.46	86.22	87.10	88.24	88.46	100.00	91.18	92.35	100.00	90.52	-9.48	0.516676	1.000000
K	intron_retention		chr2	-	chr2:201721709-201722440				chr2:201721708-201721709;chr2:201722440-201722441		3.09	0.00	3.48	4.00	0.00	NA	0.00	0.00	4.35	4.17	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	NA	2.44	0.00	4.17	1.10	3.45	NA	2.38	4.26	2.44	1.85	0.00	0.95	1.46	4.76	3.19	5.48	4.50	0.00	1.67	1.67	0.824016	1.000000
K	alternative_donor	TXNDC17	chr17	+	chr17:6544473-6545072;chr17:6544421-6545072	chr17:6544548-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		89.04	74.71	79.45	72.34	83.61	80.36	87.67	88.57	88.52	78.95	78.79	77.14	86.32	88.57	80.88	84.29	73.49	87.50	82.88	90.74	84.00	79.49	84.71	84.62	87.84	80.00	82.35	77.42	92.21	84.21	83.87	81.16	83.55	74.42	85.07	82.35	84.94	88.57	3.63	0.280936	0.650093
K	intron_retention	PPP3CC	chr8	+	chr8:22397012-22398127				chr8:22397011-22397012;chr8:22398127-22398128		4.76	14.29	11.48	5.56	3.45	5.49	0.00	2.90	1.54	0.00	0.00	0.00	NA	2.41	3.16	0.00	0.00	0.00	9.09	9.43	8.20	8.70	8.70	11.48	0.00	15.29	11.11	5.26	5.26	4.71	8.24	11.63	14.29	11.54	12.00	9.82	9.09	6.50	-2.59	0.520887	1.000000
K	intron_retention	ZFAND2B	chr2	+	chr2:220072144-220072369				chr2:220072143-220072144;chr2:220072369-220072370		12.50	0.00	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	0.00	0.00	14.29	0.00	NA	0.00	3.33	3.33	0.629122	1.000000
N	jcn_only_AD	EDEM1	chr3	+	chr3:5255208-5257513	chr3:5255877-5257513		chr3:5255208-5255876	chr3:5255207-5255208		0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	1.63	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.78	0.495419	0.739002
N	alternative_acceptor	NGRN,RP11-697E2.6	chr15	+	chr15:90809631-90814419;chr15:90809631-90818678	chr15:90809631-90814829		chr15:90814420-90814829;chr15:90814830-90818678	chr15:90814829-90814830;chr15:90818678-90818679		0.00	2.78	0.00	6.67	3.70	14.29	0.00	0.00	0.00	5.26	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	4.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	2.90	0.00	-2.90	0.057950	0.570243
K	intron_retention		chr7	-	chr7:148506248-148506401				chr7:148506247-148506248;chr7:148506401-148506402		23.81	2.86	19.05	14.75	3.70	5.66	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	4.55	7.14	4.35	5.88	8.00	8.33	36.36	10.42	7.55	4.55	8.33	4.17	4.44	4.82	13.04	5.56	0.00	7.50	4.55	5.79	1.24	0.970814	1.000000
N	alternative_acceptor	SSNA1	chr9	+	chr9:140083231-140083517	chr9:140083231-140083452		chr9:140083453-140083517	chr9:140083517-140083518		5.45	11.46	8.20	19.23	15.19	11.54	10.42	14.00	12.68	10.34	7.27	2.17	5.88	11.63	20.25	11.25	8.13	4.08	6.59	4.08	8.33	11.11	7.41	3.70	6.90	8.89	9.72	10.87	7.79	8.16	10.00	8.82	5.62	11.63	8.89	7.84	6.75	9.45	2.70	0.530534	0.812180
K	alternative_acceptor	FAM65A	chr16	+	chr16:67577168-67577253	chr16:67577168-67577250		chr16:67577251-67577253	chr16:67577253-67577254		86.36	87.50	79.41	NA	79.17	NA	85.71	94.44	77.27	85.71	90.91	NA	92.86	86.36	79.17	82.35	85.71	NA	75.00	76.92	83.33	85.71	78.95	69.23	NA	83.33	76.92	NA	86.96	NA	86.67	100.00	83.33	82.61	81.82	88.00	85.71	86.36	0.65	0.835582	0.940678
K	cassette	P2RX4	chr12	+	chr12:121659970-121666335	chr12:121659970-121660749;chr12:121660847-121666335		chr12:121660750-121660846			96.69	100.00	100.00	100.00	97.62	100.00	100.00	98.52	100.00	96.26	100.00	100.00	98.25	100.00	100.00	97.81	99.14	100.00	90.91	96.86	96.88	95.18	97.78	96.45	100.00	97.58	90.70	97.10	98.36	98.68	97.16	100.00	100.00	95.10	94.62	97.52	100.00	97.37	-2.63	0.811194	0.936947
K	intron_retention		chr12	+	chr12:120934020-120934204				chr12:120934019-120934020;chr12:120934204-120934205		4.35	0.00	13.73	11.36	12.50	0.00	1.56	1.43	4.17	6.45	6.31	0.00	5.88	5.08	5.00	6.17	9.90	6.90	7.50	7.27	3.77	10.45	10.68	13.04	15.79	7.27	11.48	10.53	10.99	9.09	16.07	19.15	6.67	7.94	7.58	5.56	6.28	6.17	-0.10	0.817536	1.000000
N	jcn_only_AA	WDR91	chr7	-	chr7:134878096-134878329;chr7:134878099-134878329;chr7:134878230-134878329	chr7:134878152-134878329		chr7:134878096-134878098;chr7:134878099-134878151;chr7:134878152-134878229	chr7:134878095-134878096;chr7:134878098-134878099;chr7:134878151-134878152		94.74	100.00	96.43	NA	96.00	NA	95.00	NA	91.67	83.33	100.00	NA	100.00	NA	90.91	100.00	96.88	NA	94.44	81.82	NA	100.00	86.00	92.86	100.00	100.00	88.89	NA	87.50	NA	100.00	83.87	100.00	92.11	91.38	95.00	100.00	97.37	-2.63	0.415651	0.688528
N	alternative_acceptor	FIBP	chr11	-	chr11:65652128-65652405	chr11:65652160-65652405		chr11:65652128-65652159	chr11:65652127-65652128		1.54	3.25	4.94	0.00	2.22	2.78	1.43	0.00	0.00	0.00	1.72	0.00	0.00	2.86	1.82	0.00	0.00	0.00	3.62	1.79	2.35	5.00	3.77	4.17	5.00	2.17	4.69	0.00	1.75	5.00	0.00	3.23	2.05	2.78	2.44	2.38	2.65	1.67	-0.98	0.212336	0.671247
N	alternative_last_exon	PCM1	chr8	+	chr8:97978275-98155247	chr8:97978275-98041630	chr8:98155248-98155729	chr8:98041631-98041722			95.83	95.00	94.12	NA	95.24	NA	98.00	100.00	100.00	95.45	97.14	96.67	100.00	100.00	100.00	100.00	96.30	95.83	90.91	95.45	91.67	100.00	96.77	94.74	91.67	96.15	93.33	95.83	97.83	91.43	95.24	90.91	92.86	95.24	100.00	100.00	93.93	95.99	2.06	0.209976	0.435965
K	intron_retention	ITGAX	chr16	+	chr16:31382819-31382950				chr16:31382818-31382819;chr16:31382950-31382951		32.99	31.71	36.05	31.03	37.21	NA	2.55	1.20	1.37	4.44	6.50	1.83	5.80	3.51	12.50	5.38	8.79	3.59	25.00	29.23	12.24	33.59	47.37	26.61	37.93	14.13	33.75	18.23	23.33	4.12	15.79	31.75	20.00	27.46	37.31	23.71	22.50	14.96	-7.54	0.994977	1.000000
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4829561-4830019;chr7:4829561-4829844	chr7:4829561-4830089		chr7:4829845-4830019;chr7:4830020-4830089	chr7:4830019-4830020;chr7:4830089-4830090		56.36	71.23	61.70	66.67	69.09	67.74	95.83	96.97	95.83	85.71	90.00	92.31	93.55	100.00	93.94	100.00	91.30	NA	78.43	68.89	68.18	61.54	69.57	60.53	59.38	73.91	71.43	79.31	77.78	81.25	58.21	53.03	64.58	61.54	61.82	57.14	74.83	71.40	-3.43	0.886363	0.961240
K	intron_retention	NMT1	chr17	+	chr17:43181245-43182226				chr17:43181244-43181245;chr17:43182226-43182227		8.33	0.00	6.49	4.17	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	1.59	0.00	0.00	5.56	1.61	3.95	3.70	5.56	13.64	0.00	1.15	6.15	6.25	2.22	7.41	5.00	4.48	1.56	6.12	5.88	8.82	0.00	1.38	1.38	0.791226	1.000000
N	jcn_only_AD	E4F1	chr16	+	chr16:2285003-2285081;chr16:2284990-2285081;chr16:2284966-2285081;chr16:2284951-2285081	chr16:2284973-2285081		chr16:2284951-2284965;chr16:2284966-2284972;chr16:2284973-2284989;chr16:2284990-2285002	chr16:2284950-2284951;chr16:2284965-2284966;chr16:2284972-2284973;chr16:2284989-2284990		3.70	1.72	0.00	4.35	2.08	3.57	0.00	NA	16.67	0.00	0.00	NA	0.00	NA	6.25	4.17	12.50	NA	0.00	0.00	5.71	0.00	0.00	5.26	0.00	12.50	6.67	0.00	3.12	0.00	0.00	7.69	5.26	0.00	0.00	2.50	0.00	1.85	1.85	0.407374	0.671935
N	jcn_only_AD		chr6	-	chr6:86322642-86324736;chr6:86322642-86324556	chr6:86322642-86324698		chr6:86324557-86324698;chr6:86324699-86324736	chr6:86324698-86324699;chr6:86324736-86324737		100.00	100.00	100.00	100.00	100.00	100.00	96.72	100.00	100.00	97.56	93.94	100.00	98.65	96.43	93.94	93.40	97.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	96.36	100.00	100.00	100.00	91.11	100.00	95.12	100.00	100.00	0.00	0.831533	0.923322
K	jcn_only_AD	PARP10	chr8	-	chr8:145057234-145057479	chr8:145057234-145057334		chr8:145057335-145057479	chr8:145057479-145057480		96.59	98.77	97.03	98.15	100.00	97.66	100.00	99.26	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	97.08	96.65	88.46	95.56	95.45	96.36	98.15	98.10	100.00	100.00	98.80	89.66	92.18	95.52	98.53	95.35	95.51	97.56	97.62	0.05	0.561958	0.778873
K	alternative_donor	FLNA	chrX	-	chrX:153579410-153579948	chrX:153579410-153579507		chrX:153579508-153579948	chrX:153579948-153579949		17.06	5.00	20.08	8.67	14.63	3.23	1.11	3.32	2.63	1.26	2.30	0.92	2.47	4.15	4.95	1.79	2.56	1.29	3.88	15.71	6.25	18.50	22.78	12.40	6.12	17.04	14.35	6.18	8.76	3.99	15.41	16.02	3.54	12.92	15.62	7.84	3.71	15.56	11.85	0.023826	0.295391
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67815040-67815113;chr11:67815040-67815122	chr11:67815040-67815133		chr11:67815114-67815122;chr11:67815123-67815133	chr11:67815122-67815123;chr11:67815133-67815134		0.00	0.00	3.03	0.00	1.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.20	0.00	0.00	1.19	0.00	0.00	1.57	3.64	0.00	0.00	0.00	0.00	0.96	5.71	0.00	0.00	2.50	0.00	0.00	0.00	0.889956	0.961426
N	alternative_acceptor	SART3	chr12	-	chr12:108919387-108919875	chr12:108919577-108919875		chr12:108919387-108919576	chr12:108919386-108919387		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.56	0.00	5.13	10.00	0.00	0.00	2.70	0.00	0.00	0.00	0.391002	0.709013
N	jcn_only_AD	TMEM126B	chr11	+	chr11:85345652-85346710;chr11:85345221-85346710	chr11:85345324-85346710		chr11:85345221-85345323;chr11:85345324-85345651	chr11:85345220-85345221;chr11:85345323-85345324		96.00	100.00	100.00	100.00	92.86	NA	100.00	100.00	100.00	96.15	100.00	97.14	96.77	100.00	96.00	100.00	95.92	92.86	100.00	95.83	96.30	100.00	97.73	96.67	NA	100.00	100.00	100.00	100.00	91.67	100.00	94.12	100.00	93.33	97.06	97.83	100.00	100.00	0.00	0.523416	0.754861
K	alternative_acceptor	TEP1	chr14	-	chr14:20837714-20837832	chr14:20837736-20837832		chr14:20837714-20837735	chr14:20837713-20837714		84.62	100.00	100.00	NA	NA	100.00	100.00	100.00	92.86	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	90.00	83.33	89.47	NA	87.50	80.00	100.00	88.46	94.12	100.00	100.00	100.00	92.59	92.31	90.00	94.44	90.00	90.32	100.00	90.53	-9.47	0.191992	0.660713
K	intron_retention		chr19	+	chr19:17384995-17386609				chr19:17384994-17384995;chr19:17386609-17386610		3.03	0.00	2.67	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	9.52	0.00	3.85	2.86	0.00	0.00	0.00	4.17	0.00	0.00	7.32	1.64	3.33	0.00	1.51	1.51	0.514865	1.000000
K	intron_retention	FGD2	chr6	+	chr6:36990147-36993567				chr6:36990146-36990147;chr6:36993567-36993568		3.79	5.88	NA	NA	0.00	NA	0.00	2.22	0.00	0.00	0.00	4.00	3.12	2.71	3.57	0.00	2.78	5.36	NA	6.32	NA	NA	0.00	2.44	14.29	2.96	NA	9.68	4.35	4.84	0.00	0.00	4.17	5.88	5.26	5.74	4.17	2.83	-1.33	0.963255	1.000000
K	coord_cassette	EEF1D	chr8	-	chr8:144669020-144679517	chr8:144669020-144676044;chr8:144676242-144676585;chr8:144676689-144679517		chr8:144676045-144676241;chr8:144676586-144676688			0.00	1.47	1.72	3.85	2.17	9.09	4.00	0.00	7.14	6.82	3.77	4.76	5.00	7.14	3.85	2.70	6.38	6.06	4.26	4.00	5.13	6.45	4.08	6.67	5.08	0.00	2.50	11.54	5.56	7.69	3.70	7.55	3.77	9.09	7.41	6.38	4.13	1.85	-2.28	0.308308	0.643829
N	jcn_only_AA	TNK2	chr3	-	chr3:195594152-195594231;chr3:195594136-195594231	chr3:195594130-195594231		chr3:195594130-195594135;chr3:195594136-195594151	chr3:195594129-195594130;chr3:195594135-195594136		5.26	2.74	16.67	NA	9.52	NA	12.50	7.89	3.85	NA	0.00	NA	6.67	8.45	4.76	NA	15.00	NA	13.33	6.12	9.52	NA	12.50	NA	7.50	2.15	0.00	NA	10.53	NA	4.35	14.29	15.38	NA	7.14	22.22	10.00	5.69	-4.31	0.109415	0.663989
K	cassette	ERP29	chr12	+	chr12:112451414-112459953	chr12:112451414-112457559;chr12:112457699-112459953		chr12:112457560-112457698			94.64	95.35	91.57	98.32	95.82	100.00	96.25	98.38	91.28	98.85	98.68	99.25	96.09	96.58	93.75	98.18	97.05	99.54	94.19	95.65	97.28	98.92	98.42	99.63	95.77	94.62	92.21	98.68	96.11	99.01	98.46	93.33	95.08	99.60	98.94	99.48	95.56	96.12	0.56	0.267101	0.709176
N	cassette	SRD5A3	chr4	+	chr4:56230439-56235998;chr4:56225656-56235998	chr4:56225656-56233754,chr4:56230439-56233754;chr4:56233890-56235998		chr4:56233755-56233889			78.57	73.13	77.27	95.24	88.24	100.00	87.80	84.62	78.95	87.50	88.60	87.23	93.24	NA	78.57	86.21	87.65	84.62	95.35	100.00	100.00	100.00	92.50	80.77	100.00	NA	100.00	93.33	90.32	100.00	91.67	NA	83.87	87.23	77.59	91.89	90.52	88.15	-2.37	0.976703	0.995133
K	jcn_only_AA	SF1	chr11	-	chr11:64532991-64534371	chr11:64533628-64534371		chr11:64532991-64533627	chr11:64532990-64532991		35.09	38.78	39.05	53.33	37.70	90.00	39.77	34.85	38.71	43.24	35.04	34.04	36.67	39.71	37.40	38.89	40.48	30.77	66.67	37.25	48.89	32.31	33.72	40.91	66.67	39.22	37.63	30.65	40.24	52.27	37.84	48.57	78.57	36.92	30.16	34.92	53.22	37.55	-15.67	0.068588	0.663989
K	intron_retention	LILRB5	chr19	-	chr19:54756413-54756733				chr19:54756412-54756413;chr19:54756733-54756734		13.21	11.60	NA	3.70	14.29	3.03	2.04	0.00	NA	0.00	1.50	0.00	3.98	0.00	NA	0.00	2.30	0.00	3.92	9.76	NA	3.23	10.00	3.70	11.21	8.73	12.50	8.64	11.44	1.12	8.47	13.33	7.62	4.48	14.06	4.48	5.80	8.60	2.80	0.999812	1.000000
K	cassette	ISCU	chr12	+	chr12:108956513-108958054	chr12:108956513-108957835;chr12:108957932-108958054		chr12:108957836-108957931			0.00	1.38	0.84	0.00	2.33	0.00	3.73	3.33	3.47	8.96	4.29	10.26	2.90	0.00	2.27	4.00	4.93	6.67	0.98	0.74	2.17	2.56	1.37	2.86	0.00	0.81	1.29	9.38	3.03	3.70	0.85	0.54	0.91	2.78	1.99	4.17	1.18	0.78	-0.40	0.380932	0.709410
N	jcn_only_AD	SDHB	chr1	-	chr1:17371384-17371635;chr1:17371384-17380246	chr1:17371384-17380442		chr1:17371636-17380246;chr1:17380247-17380442	chr1:17380246-17380247;chr1:17380442-17380443		81.94	100.00	100.00	100.00	100.00	NA	98.84	39.91	94.12	100.00	99.54	100.00	100.00	30.27	91.67	100.00	98.96	100.00	100.00	69.62	100.00	100.00	98.20	93.62	NA	28.51	98.31	97.56	100.00	100.00	86.00	100.00	100.00	98.00	100.00	97.56	100.00	54.77	-45.23	0.009471	0.237005
K	intron_retention	RABEP2	chr16	-	chr16:28917081-28917187				chr16:28917080-28917081;chr16:28917187-28917188		0.00	11.63	0.00	0.00	10.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.69	8.33	6.25	0.00	8.00	NA	0.00	5.26	4.17	5.88	6.90	9.09	5.88	11.54	5.13	16.67	6.67	11.11	2.56	2.63	0.06	0.971786	1.000000
N	cassette	CD44	chr11	+	chr11:35219794-35227661;chr11:35219794-35229651;chr11:35219794-35227658;chr11:35211520-35236398;chr11:35219794-35236398;chr11:35219794-35232792;chr11:35223335-35232792;chr11:35211613-35227658;chr11:35211613-35229651;chr11:35211613-35232792;chr11:35211613-35236398;chr11:35223335-35236398;chr11:35223335-35229651;chr11:35222743-35236398;chr11:35211613-35227661;chr11:35211613-35227331;chr11:35211520-35229651;chr11:35211520-35232792	chr11:35223335-35226058,chr11:35211520-35226058,chr11:35211613-35226058,chr11:35219794-35226058,chr11:35222743-35226058;chr11:35226188-35232792,chr11:35226188-35227331,chr11:35226188-35227658,chr11:35226188-35227661,chr11:35226188-35229651,chr11:35226188-35236398		chr11:35226059-35226187			1.78	1.18	1.92	10.21	2.26	14.61	0.47	2.61	3.62	15.85	2.06	17.49	1.10	4.87	4.63	15.55	3.38	21.21	2.19	1.99	4.06	9.40	3.77	15.98	9.09	3.08	3.86	16.36	5.75	20.83	1.35	1.81	1.85	5.33	2.31	9.37	1.52	2.30	0.78	0.981845	0.995216
K	cassette	SIVA1	chr14	+	chr14:105219657-105222940	chr14:105219657-105221966;chr14:105222162-105222940		chr14:105221967-105222161			95.92	100.00	95.08	93.18	93.33	100.00	98.51	100.00	100.00	97.56	93.94	100.00	98.97	100.00	100.00	98.04	95.71	100.00	96.47	91.67	95.56	100.00	93.42	85.00	96.91	100.00	100.00	100.00	95.31	95.83	100.00	96.72	97.96	90.91	95.65	100.00	98.23	100.00	1.77	0.896618	0.967641
N	jcn_only_AA	P4HB	chr17	-	chr17:79813565-79817056;chr17:79813382-79817056	chr17:79813463-79817056		chr17:79813382-79813462;chr17:79813463-79813564	chr17:79813381-79813382;chr17:79813462-79813463		95.79	92.42	93.70	98.48	94.66	88.89	95.53	95.79	95.26	93.12	94.35	92.69	95.18	95.18	95.14	96.94	93.34	92.85	95.16	96.30	94.76	97.30	97.71	96.64	95.24	94.85	95.49	97.37	95.67	97.87	97.24	96.30	95.92	95.50	96.30	97.14	95.21	95.79	0.58	0.159146	0.663989
N	coord_cassette	STAC3	chr12	-	chr12:57638995-57642488	chr12:57638995-57640586;chr12:57640685-57641908;chr12:57641982-57642488		chr12:57640587-57640684;chr12:57641909-57641981			100.00	100.00	100.00	NA	100.00	92.86	100.00	98.35	94.55	100.00	98.11	100.00	95.31	96.43	95.45	100.00	95.12	95.24	92.68	100.00	100.00	NA	100.00	100.00	100.00	98.44	96.67	100.00	96.00	100.00	100.00	100.00	97.22	100.00	94.12	93.55	98.61	99.22	0.61	0.365029	0.643829
K	cassette	CCDC53	chr12	-	chr12:102406971-102419751	chr12:102406971-102411497;chr12:102411584-102419751		chr12:102411498-102411583			10.20	4.55	6.38	12.00	7.55	12.90	2.38	9.38	5.00	7.14	5.00	8.33	2.13	10.71	1.89	0.00	2.63	13.33	3.85	4.00	4.76	17.65	6.82	4.76	0.00	8.70	4.76	17.65	7.50	3.45	10.34	3.57	4.92	11.54	5.88	9.09	3.12	9.79	6.67	0.001115	0.112365
K	jcn_only_AD	PREB	chr2	-	chr2:27354377-27354541	chr2:27354377-27354539		chr2:27354540-27354541	chr2:27354541-27354542		100.00	100.00	100.00	100.00	96.15	100.00	98.61	90.62	100.00	96.97	100.00	94.12	100.00	100.00	97.50	100.00	95.12	100.00	93.10	92.31	100.00	95.65	96.43	90.62	NA	95.35	95.65	96.30	100.00	92.50	100.00	93.18	96.43	97.30	90.00	97.44	98.61	97.67	-0.94	0.579788	0.790420
K	alternative_last_exon	USP19	chr3	-	chr3:49145962-49147616	chr3:49146619-49147616	chr3:49145479-49145961	chr3:49146106-49146618			20.75	21.85	16.67	29.73	25.93	30.93	22.22	12.50	13.04	20.00	15.38	16.67	17.14	21.05	13.64	19.05	13.79	18.18	16.18	19.57	16.05	25.00	26.00	35.00	25.93	24.32	16.28	18.18	22.73	25.00	21.54	21.52	18.67	26.47	24.44	37.50	20.26	20.90	0.64	0.868085	0.930627
K	cassette	CLTB	chr5	-	chr5:175825049-175837257	chr5:175825049-175833157;chr5:175833710-175837257		chr5:175833158-175833709			0.00	0.00	0.00	2.08	1.04	0.00	1.64	0.00	0.00	1.64	1.47	0.00	1.15	0.00	0.00	4.05	1.02	2.17	0.78	2.63	0.00	6.25	3.09	3.70	0.00	2.56	1.82	2.78	1.52	2.44	0.00	4.00	1.75	2.13	1.64	2.00	0.96	0.00	-0.96	0.973454	0.994559
N	jcn_only_AA		chr22	+	chr22:50961596-50961696;chr22:50961596-50961679;chr22:50961596-50961693	chr22:50961596-50961663		chr22:50961664-50961679;chr22:50961680-50961693;chr22:50961694-50961696	chr22:50961679-50961680;chr22:50961693-50961694;chr22:50961696-50961697		96.15	94.57	92.31	100.00	95.35	96.74	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	91.20	78.57	95.56	93.33	92.68	100.00	97.95	100.00	100.00	100.00	100.00	100.00	91.43	100.00	92.11	100.00	100.00	100.00	96.26	93.79	-2.47	0.422833	0.692699
K	intron_retention	DNM2	chr19	+	chr19:10941055-10941656				chr19:10941054-10941055;chr19:10941656-10941657		7.55	0.00	8.11	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.45	0.00	0.00	0.00	3.33	NA	0.00	9.68	5.26	0.00	13.64	NA	0.00	4.17	8.82	0.00	6.25	NA	9.09	12.50	7.14	5.88	0.00	4.17	0.00	5.86	5.86	0.516642	1.000000
N	cassette	RSRC2	chr12	-	chr12:122995736-122999651	chr12:122995736-122998313;chr12:122998422-122999651		chr12:122998314-122998421			1.96	0.00	4.05	0.00	0.00	NA	0.00	0.00	2.17	0.00	0.00	0.00	1.72	2.17	0.00	0.00	0.00	1.12	NA	4.17	0.00	2.17	2.38	3.17	NA	3.70	1.52	0.00	3.57	4.17	4.88	2.33	0.00	1.56	5.00	2.33	0.00	2.94	2.94	0.023989	0.405319
K	jcn_only_AD	CCDC82,CDK2AP2	chr11	-	chr11:67275161-67275471	chr11:67275161-67275330		chr11:67275331-67275471	chr11:67275471-67275472		0.00	2.53	3.57	0.00	0.00	5.88	6.93	12.50	9.52	4.00	6.67	6.25	5.50	5.26	13.79	12.00	0.00	5.88	4.55	0.00	8.33	6.25	6.12	6.25	0.00	9.09	6.90	13.33	5.13	4.17	5.26	9.30	4.17	5.88	10.00	8.11	4.36	5.26	0.90	0.551187	0.771240
N	jcn_only_AA	COX7A2L	chr2	-	chr2:42578496-42580351;chr2:42562886-42580351	chr2:42578500-42580351		chr2:42562886-42578495;chr2:42578496-42578499	chr2:42562885-42562886;chr2:42578495-42578496		100.00	96.36	97.37	95.00	100.00	100.00	96.30	100.00	96.25	99.10	97.24	96.34	98.10	93.94	98.33	100.00	100.00	100.00	85.19	90.91	94.64	100.00	96.47	100.00	33.33	100.00	92.77	95.00	94.79	91.67	100.00	97.47	96.77	97.37	100.00	100.00	96.33	100.00	3.67	0.264345	0.663989
K	alternative_last_exon	LILRA6	chr19	-	chr19:54743540-54743776;chr19:54723115-54743776	chr19:54742966-54743776	chr19:54722998-54723114	chr19:54742425-54742965			68.23	100.00	56.60	41.18	76.19	44.44	66.67	34.35	12.96	36.54	75.00	34.00	77.78	43.97	27.03	56.14	89.55	47.37	NA	64.58	20.75	63.16	86.36	50.00	36.36	65.81	36.00	44.00	80.28	30.68	31.03	26.53	54.55	45.16	76.74	40.00	66.67	54.27	-12.40	0.256460	0.472280
N	jcn_only_AA	NPL,PEX14	chr1	+	chr1:182783994-182785848	chr1:182783994-182785202		chr1:182785203-182785848	chr1:182785848-182785849		2.19	7.78	0.67	12.90	3.68	21.74	0.00	0.00	0.00	1.18	1.46	1.01	0.85	0.00	0.00	0.00	0.00	0.00	8.05	1.05	5.49	0.68	0.87	0.00	0.00	0.00	0.48	0.00	0.62	2.82	0.00	1.78	7.46	1.90	1.41	2.48	4.16	0.00	-4.16	0.093627	0.663989
N	jcn_only_AA	SKAP2	chr7	-	chr7:26709276-26709709;chr7:26708719-26709709;chr7:26709335-26709709	chr7:26708724-26709709		chr7:26708719-26708723;chr7:26708724-26709275;chr7:26709276-26709334	chr7:26708718-26708719;chr7:26708723-26708724;chr7:26709275-26709276		0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	3.33	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr17	+	chr17:16335615-16338203				chr17:16335614-16335615;chr17:16338203-16338204		45.45	63.64	NA	25.00	20.00	27.27	NA	NA	NA	NA	NA	NA	9.09	20.00	NA	NA	NA	NA	11.76	35.71	16.67	NA	27.78	NA	15.79	16.00	NA	NA	31.58	NA	4.35	20.00	16.67	40.00	23.81	29.41	15.79	20.00	4.21	0.800554	1.000000
N	alternative_acceptor	SRRM2	chr16	+	chr16:2820467-2820604;chr16:2820467-2820607	chr16:2820467-2820610		chr16:2820605-2820607;chr16:2820608-2820610	chr16:2820607-2820608;chr16:2820610-2820611		4.62	0.00	0.00	4.26	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.619250	0.854460
N	jcn_only_AA	HSF1	chr8	+	chr8:145537718-145537792;chr8:145537718-145537811;chr8:145537718-145537795	chr8:145537718-145537787		chr8:145537788-145537792;chr8:145537793-145537795;chr8:145537796-145537811	chr8:145537792-145537793;chr8:145537795-145537796;chr8:145537811-145537812		88.89	95.06	93.94	88.00	88.52	86.67	92.86	94.74	93.48	94.74	94.44	85.71	94.34	97.62	96.36	92.16	93.75	83.33	82.14	82.35	85.48	86.67	92.45	100.00	96.83	90.62	90.91	96.67	90.91	90.91	89.66	87.04	83.58	84.85	92.31	87.50	93.60	90.14	-3.46	0.964036	0.987074
K	alternative_last_exon	NDUFB2	chr7	+	chr7:140396643-140401854;chr7:140396643-140421351	chr7:140396643-140402665	chr7:140421352-140422590	chr7:140402666-140402810			90.00	99.27	67.86	99.35	99.34	100.00	97.65	93.33	91.40	95.03	95.73	96.24	97.78	95.83	94.74	97.93	95.00	96.67	99.50	90.16	99.56	95.10	95.96	91.54	99.71	86.36	85.71	97.39	98.03	98.97	94.44	85.37	99.15	91.67	93.14	94.46	99.21	91.75	-7.47	0.003317	0.103535
N	coord_cassette	PEX16	chr11	-	chr11:45935490-45936154	chr11:45935490-45935681;chr11:45935755-45935866;chr11:45936020-45936154		chr11:45935682-45935754;chr11:45935867-45936019			87.50	97.50	86.96	93.10	90.62	94.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.96	88.00	95.12	100.00	76.92	100.00	91.89	100.00	91.67	100.00	91.67	100.00	85.71	92.31	87.23	100.00	82.35	100.00	94.69	94.00	-0.69	0.919736	0.972993
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28847807-28848170;chr16:28847807-28848068;chr16:28847807-28847918;chr16:28847807-28848071	chr16:28847807-28848048		chr16:28847919-28848048;chr16:28848049-28848068;chr16:28848069-28848071;chr16:28848072-28848170	chr16:28848048-28848049;chr16:28848068-28848069;chr16:28848071-28848072;chr16:28848170-28848171		62.71	65.17	52.22	60.00	44.86	69.39	59.46	72.73	65.38	55.77	51.92	45.83	53.19	67.74	51.72	50.98	55.93	61.11	56.92	39.22	60.00	48.72	50.79	40.54	NA	73.68	50.00	65.00	54.10	57.14	48.48	50.00	43.90	67.27	55.88	56.58	56.92	65.22	8.30	0.475018	0.776549
N	cassette	ACTR1A	chr10	-	chr10:104240930-104242767;chr10:104240930-104241757	chr10:104240930-104241593;chr10:104241656-104241757,chr10:104241656-104242767		chr10:104241594-104241655			97.98	100.00	99.09	95.92	97.53	97.50	100.00	100.00	100.00	96.55	96.36	100.00	99.09	99.34	98.61	95.65	92.92	96.67	95.24	100.00	98.90	95.56	94.51	96.15	100.00	100.00	97.62	94.44	98.67	98.44	98.51	98.94	100.00	97.80	99.00	98.08	100.00	99.67	-0.33	0.778598	0.934744
N	coord_cassette	HSD17B14	chr19	-	chr19:49316606-49318293	chr19:49316606-49316712;chr19:49316810-49316919;chr19:49316988-49318293		chr19:49316713-49316809;chr19:49316920-49316987			90.91	100.00	NA	91.43	91.03	93.85	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.56	100.00	100.00	97.14	92.96	100.00	90.32	100.00	100.00	96.88	95.71	100.00	86.84	100.00	94.37	85.71	100.00	97.96	97.78	100.00	2.22	0.889228	0.967336
K	cassette	DIABLO	chr12	-	chr12:122693125-122701034	chr12:122693125-122694243;chr12:122694406-122701034		chr12:122694244-122694405			4.26	1.32	4.88	2.17	2.86	4.76	0.00	2.94	1.92	3.70	1.37	2.63	0.00	2.94	5.56	4.48	3.33	3.03	2.17	0.00	5.00	3.92	1.16	2.04	0.00	2.00	2.99	2.33	0.00	2.38	3.57	2.30	0.00	4.05	2.63	2.56	0.00	2.94	2.94	0.020761	0.390745
N	alternative_acceptor	RNF10	chr12	+	chr12:121013492-121013594;chr12:121013492-121013572	chr12:121013492-121013604		chr12:121013573-121013594;chr12:121013595-121013604	chr12:121013594-121013595;chr12:121013604-121013605		0.00	0.00	2.56	6.25	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	0.00	2.35	0.00	1.23	1.59	0.00	0.00	0.00	0.00	0.363217	0.709013
K	alternative_donor	FDXR	chr17	-	chr17:72868259-72868893;chr17:72868259-72868990	chr17:72868259-72868367		chr17:72868368-72868893;chr17:72868894-72868990	chr17:72868893-72868894;chr17:72868990-72868991		0.00	21.21	16.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.69	NA	NA	NA	13.33	9.09	6.67	NA	NA	NA	41.18	6.25	5.71	NA	NA	NA	4.76	8.96	14.29	7.69	7.69	NA	13.81	5.50	-8.30	0.179337	0.563271
K	cassette	STYXL1	chr7	-	chr7:75634723-75651168	chr7:75634723-75643059;chr7:75643206-75651168		chr7:75643060-75643205			75.51	73.08	73.81	85.00	82.05	78.95	82.14	85.19	71.88	78.95	74.07	73.33	78.26	83.87	82.86	72.73	75.00	89.47	62.79	77.14	73.68	70.00	74.07	65.00	50.00	78.95	80.00	92.31	84.78	81.82	57.14	70.27	67.57	66.67	70.00	65.22	70.32	78.05	7.72	0.271925	0.709176
K	intron_retention	CEBPZ	chr2	-	chr2:37430009-37430092				chr2:37430008-37430009;chr2:37430092-37430093		25.00	6.76	14.29	7.69	7.84	6.67	51.61	NA	28.57	39.58	48.78	76.47	47.37	NA	24.00	15.79	66.67	57.14	4.55	17.39	5.26	12.90	10.14	12.96	0.00	0.00	10.26	9.80	9.84	6.25	12.50	13.85	6.02	13.85	9.43	10.91	6.39	14.95	8.55	0.839915	1.000000
K	cassette	DPP7	chr9	-	chr9:140006207-140006563	chr9:140006207-140006392;chr9:140006482-140006563		chr9:140006393-140006481			100.00	100.00	100.00	97.97	99.26	98.54	98.58	100.00	100.00	98.73	99.02	98.46	100.00	93.94	94.55	100.00	99.44	100.00	98.42	97.50	99.40	98.59	98.51	100.00	100.00	100.00	100.00	99.15	100.00	98.46	97.53	98.31	98.25	98.94	100.00	100.00	99.29	98.77	-0.52	0.352419	0.709176
K	intron_retention	YPEL3	chr16	-	chr16:30106468-30106572				chr16:30106467-30106468;chr16:30106572-30106573		5.26	2.51	5.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	4.55	0.00	NA	0.00	NA	0.00	0.00	2.83	NA	0.00	NA	11.54	5.26	5.56	NA	NA	NA	0.00	4.90	4.90	0.471899	1.000000
K	cassette	ARRB2	chr17	+	chr17:4618339-4619267	chr17:4618339-4618494;chr17:4618632-4619267		chr17:4618495-4618631			2.04	11.76	3.53	NA	0.00	NA	0.00	0.86	0.00	0.00	0.00	3.70	1.02	0.00	0.76	0.00	0.00	11.11	NA	1.59	0.00	NA	3.51	NA	0.00	2.15	4.55	4.76	1.82	3.12	0.00	3.85	NA	6.25	9.52	6.67	0.51	1.23	0.72	0.520698	0.797002
K	alternative_acceptor	SNF8	chr17	-	chr17:47009077-47010566	chr17:47009080-47010566		chr17:47009077-47009079	chr17:47009076-47009077		91.38	87.18	89.47	91.07	87.27	86.54	90.74	96.15	86.67	90.24	93.75	88.57	90.00	84.00	90.32	86.89	93.85	91.89	88.36	91.84	87.88	92.50	88.42	87.18	88.10	85.71	96.08	82.50	89.86	89.29	88.00	94.37	88.97	87.27	85.90	89.74	88.66	89.69	1.03	0.755236	0.910387
N	alternative_acceptor		chr1	+	chr1:150530626-150530712;chr1:150530626-150530732	chr1:150530626-150530948		chr1:150530713-150530732;chr1:150530733-150530948	chr1:150530732-150530733;chr1:150530948-150530949		85.71	88.64	71.43	100.00	87.10	92.11	100.00	96.55	96.77	100.00	100.00	NA	93.33	90.00	91.07	NA	100.00	NA	94.74	81.25	84.62	NA	94.44	NA	91.11	80.00	77.27	82.35	92.31	NA	NA	80.00	85.71	NA	84.62	85.00	92.22	85.71	-6.51	0.170548	0.660713
K	intron_retention	NIFK	chr2	-	chr2:122485489-122485863				chr2:122485488-122485489;chr2:122485863-122485864		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.14	4.17	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.912552	1.000000
K	cassette	THOC7	chr3	-	chr3:63824176-63849447	chr3:63824176-63825331;chr3:63825450-63849447		chr3:63825332-63825449			88.89	100.00	81.82	NA	95.00	NA	82.86	88.24	96.00	88.57	93.02	85.19	83.33	94.12	87.10	90.00	95.65	92.00	84.62	90.00	90.91	94.74	93.75	88.89	NA	87.50	86.96	90.00	96.30	89.47	85.71	82.14	85.00	88.89	95.24	92.86	84.62	88.56	3.94	0.601387	0.850526
K	intron_retention	GLTSCR2	chr19	+	chr19:48260002-48260255				chr19:48260001-48260002;chr19:48260255-48260256		3.70	0.63	1.61	0.00	0.51	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.06	5.26	3.48	0.00	1.33	0.00	0.00	0.00	1.23	0.00	0.00	1.69	11.76	3.03	2.50	0.00	4.17	1.79	0.32	1.85	1.54	0.665530	1.000000
K	intron_retention	DAGLB	chr7	-	chr7:6452515-6452596				chr7:6452514-6452515;chr7:6452596-6452597		23.08	0.00	14.29	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	7.69	16.67	NA	8.70	NA	13.33	7.69	9.38	NA	0.00	NA	25.00	18.18	4.55	6.67	7.14	13.33	0.00	7.69	7.69	0.403667	1.000000
K	jcn_only_AA	SRSF10	chr1	-	chr1:24294214-24298062	chr1:24294447-24298062		chr1:24294214-24294446	chr1:24294213-24294214		NA	0.00	24.00	0.00	NA	0.00	10.00	11.76	19.35	9.84	9.09	7.69	11.11	17.65	11.43	8.47	6.12	0.00	0.00	31.25	14.29	11.11	14.29	5.00	NA	0.00	12.50	5.26	17.65	5.00	10.00	12.50	0.00	6.45	9.09	3.03	0.00	11.76	11.76	0.136522	0.663989
K	intron_retention	GRSF1	chr4	-	chr4:71691149-71691840				chr4:71691148-71691149;chr4:71691840-71691841		7.69	5.75	6.17	5.71	5.48	5.88	0.00	0.94	0.61	1.35	0.95	0.00	0.00	0.00	1.63	0.00	1.22	0.00	1.59	8.06	3.26	5.56	7.14	8.62	7.89	4.76	8.33	4.88	5.48	1.64	6.38	9.80	3.95	8.00	5.81	5.36	2.77	5.57	2.80	0.875937	1.000000
K	intron_retention	PHF23	chr17	-	chr17:7139160-7139248				chr17:7139159-7139160;chr17:7139248-7139249		2.78	2.74	3.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	4.62	5.36	0.00	2.75	NA	0.00	5.22	2.80	0.00	0.00	0.00	22.08	14.74	11.63	1.67	4.29	0.00	1.37	3.70	2.33	0.793041	1.000000
K	intron_retention	GLMP	chr1	-	chr1:156264357-156265316				chr1:156264356-156264357;chr1:156265316-156265317		5.26	5.56	3.39	NA	2.50	NA	3.57	0.00	NA	0.00	4.00	0.00	5.88	0.00	NA	0.00	0.00	0.00	0.00	4.76	NA	0.00	3.12	0.00	0.00	7.32	6.52	4.17	9.43	0.00	6.25	9.38	0.00	4.55	2.86	1.25	1.78	5.01	3.22	0.947962	1.000000
N	alternative_acceptor	TREM2	chr6	-	chr6:41126729-41127529;chr6:41126802-41127529;chr6:41126845-41127529	chr6:41126805-41127529		chr6:41126729-41126801;chr6:41126802-41126804;chr6:41126805-41126844	chr6:41126728-41126729;chr6:41126801-41126802;chr6:41126804-41126805		100.00	99.25	100.00	98.41	97.57	100.00	99.36	100.00	100.00	99.51	99.07	99.50	98.96	100.00	NA	98.96	99.13	100.00	99.06	100.00	99.45	100.00	96.97	100.00	99.62	100.00	95.00	100.00	97.81	99.13	100.00	100.00	99.16	98.68	97.19	100.00	99.20	100.00	0.80	0.000500	0.242646
K	jcn_only_AA	NCAPH2	chr22	+	chr22:50961352-50961508	chr22:50961352-50961445		chr22:50961446-50961508	chr22:50961508-50961509		100.00	98.96	100.00	100.00	100.00	96.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	97.37	100.00	100.00	100.00	100.00	100.00	98.46	100.00	100.00	100.00	100.00	90.00	98.25	96.36	100.00	96.00	100.00	100.00	99.48	100.00	0.52	0.508985	0.759557
K	alternative_last_exon	AC002985.3,COPE	chr19	-	chr19:19017916-19021779,chr19:19016434-19021779;chr19:19016439-19021779	chr19:19017922-19021779	chr19:19016385-19016438	chr19:19017769-19017921			98.90	98.87	100.00	97.71	98.82	95.68	99.11	99.35	99.28	97.45	99.59	98.45	98.56	97.71	99.38	99.59	99.28	99.53	98.18	97.69	97.57	96.64	98.79	96.30	97.85	98.22	97.16	99.19	96.48	97.87	96.70	96.72	94.76	93.83	97.06	96.35	98.37	97.97	-0.41	0.792157	0.877031
N	cassette	HCK	chr20	+	chr20:30662525-30671696	chr20:30662525-30667576;chr20:30667681-30671696		chr20:30667577-30667680			96.94	95.00	95.86	100.00	100.00	100.00	100.00	99.63	98.81	99.26	98.22	100.00	99.42	99.67	99.20	98.85	98.35	100.00	100.00	98.69	96.75	94.38	97.81	97.09	NA	98.71	96.51	98.09	98.63	99.22	95.41	97.75	94.59	96.53	96.53	97.48	99.42	98.70	-0.72	0.799897	0.936947
N	cassette	IL4R	chr16	+	chr16:27370316-27373572	chr16:27370316-27372086;chr16:27372137-27373572		chr16:27372087-27372136		chr16:27370237-27370315;chr16:27373573-27375224	90.38	100.00	96.21	NA	NA	NA	92.68	100.00	98.18	96.00	87.10	100.00	100.00	100.00	100.00	94.38	95.83	95.71	NA	94.74	100.00	100.00	91.89	93.88	75.00	94.87	95.24	100.00	100.00	100.00	100.00	86.76	NA	86.67	91.30	94.50	96.34	97.44	1.09	0.487600	0.774715
K	intron_retention		chr8	-	chr8:145059817-145059888				chr8:145059816-145059817;chr8:145059888-145059889		8.03	0.00	13.14	NA	NA	0.00	4.35	0.00	1.74	NA	0.00	3.45	0.00	1.28	2.42	0.00	0.00	2.94	NA	13.68	10.00	NA	7.14	10.34	8.33	4.93	9.20	16.67	NA	8.33	16.39	11.48	NA	12.50	14.81	13.16	2.17	6.48	4.30	0.747479	1.000000
N	jcn_only_AA	HSF1	chr8	+	chr8:145537718-145537792;chr8:145537718-145537787;chr8:145537718-145537795	chr8:145537718-145537811		chr8:145537788-145537792;chr8:145537793-145537795;chr8:145537796-145537811	chr8:145537792-145537793;chr8:145537795-145537796;chr8:145537811-145537812		2.78	2.47	0.00	0.00	1.61	2.22	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	5.56	1.61	3.33	0.00	0.00	0.00	0.00	2.22	3.33	0.00	0.00	3.45	1.82	1.49	0.00	0.00	2.08	0.74	2.71	1.96	0.311468	0.663989
K	cassette	UPP1	chr7	+	chr7:48134425-48146469	chr7:48134425-48141420;chr7:48141468-48146469		chr7:48141421-48141467			19.11	13.33	16.56	19.30	11.11	20.12	8.70	8.57	18.52	10.71	12.50	4.65	8.33	15.15	8.33	8.51	6.90	3.23	10.81	13.86	15.45	17.65	14.89	20.69	4.00	16.67	11.21	14.71	12.12	16.13	18.72	17.99	18.42	13.64	12.50	15.79	9.75	15.91	6.16	0.094777	0.658231
K	intron_retention		chr5	-	chr5:176951034-176951185				chr5:176951033-176951034;chr5:176951185-176951186		12.00	7.14	10.00	5.00	8.70	0.00	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	4.55	7.14	6.45	0.00	0.00	NA	4.17	0.00	5.00	NA	5.26	0.00	11.11	13.33	10.34	7.14	9.09	5.00	5.84	9.12	3.28	0.722673	1.000000
K	intron_retention		chr19	-	chr19:10463228-10463601				chr19:10463227-10463228;chr19:10463601-10463602		16.92	10.14	19.75	0.00	8.06	0.00	3.70	0.00	0.00	0.00	6.25	NA	2.63	0.00	6.67	0.00	0.00	NA	15.00	16.67	8.82	20.00	15.25	14.29	21.88	10.20	19.75	15.38	13.33	16.67	17.14	25.58	10.42	8.70	18.75	10.26	10.28	13.44	3.15	0.940978	1.000000
K	intron_retention	PPP1R12C	chr19	-	chr19:55606167-55606658				chr19:55606166-55606167;chr19:55606658-55606659		0.93	0.00	4.08	4.55	4.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	3.95	1.72	4.17	4.17	0.00	10.00	2.41	3.37	0.00	2.90	3.33	9.09	4.55	2.13	2.38	2.38	2.94	0.00	1.67	1.67	0.844697	1.000000
K	intron_retention	PPP4C	chr16	+	chr16:30094169-30094714				chr16:30094168-30094169;chr16:30094714-30094715		4.88	7.89	8.53	6.67	5.63	4.08	1.01	1.16	1.33	0.00	0.00	0.00	0.83	1.10	2.38	0.00	0.00	0.00	4.55	7.37	6.74	5.62	5.71	8.14	6.90	6.10	6.73	4.26	3.76	6.98	15.57	10.95	7.14	4.59	4.27	5.48	5.72	5.49	-0.23	0.873088	1.000000
N	cassette	NPL	chr1	+	chr1:182787995-182798737;chr1:182791335-182798737;chr1:182787825-182798737	chr1:182787995-182794915,chr1:182791335-182794915,chr1:182787825-182794915;chr1:182794956-182798737		chr1:182794916-182794955			85.45	88.75	93.28	83.78	91.04	86.96	94.90	98.00	100.00	90.70	93.17	92.50	95.86	97.92	100.00	96.30	94.21	92.31	89.52	94.62	93.06	91.43	87.17	92.75	89.77	91.03	91.74	86.96	94.00	88.00	87.01	88.98	89.25	88.24	89.14	86.92	89.64	92.83	3.18	0.706635	0.894382
N	alternative_acceptor		chr14	+	chr14:24607770-24608584	chr14:24607770-24607944		chr14:24607945-24608584	chr14:24608584-24608585		96.40	100.00	97.12	100.00	100.00	99.33	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	97.74	100.00	100.00	96.55	100.00	98.13	97.07	100.00	100.00	94.29	100.00	95.83	96.94	98.31	100.00	97.53	96.62	98.07	100.00	100.00	100.00	96.15	100.00	97.38	-2.62	0.034538	0.560254
K	cassette	XRCC6	chr22	+	chr22:42018091-42032116	chr22:42018091-42024121;chr22:42024235-42032116		chr22:42024122-42024234			98.70	100.00	98.59	NA	96.88	NA	99.44	100.00	100.00	98.69	98.17	100.00	99.50	100.00	100.00	99.59	99.50	100.00	100.00	100.00	93.10	98.99	99.34	100.00	NA	100.00	97.96	98.91	100.00	100.00	100.00	100.00	NA	100.00	99.40	100.00	99.75	100.00	0.25	0.860118	0.951512
K	intron_retention	FBXW5	chr9	-	chr9:139836919-139836998				chr9:139836918-139836919;chr9:139836998-139836999		10.64	10.34	11.90	0.00	7.14	NA	2.08	2.41	2.22	2.78	0.00	0.00	2.97	5.33	6.06	5.26	3.53	0.00	11.76	10.20	12.73	14.29	14.52	10.00	11.11	10.53	9.09	8.11	11.54	7.69	18.37	15.05	16.67	10.17	11.11	10.39	10.72	10.36	-0.36	0.993440	1.000000
K	alternative_donor	RPL18	chr19	-	chr19:49121135-49122397	chr19:49121135-49121816		chr19:49121817-49122397	chr19:49122397-49122398		2.78	0.67	2.09	0.39	0.00	0.00	0.00	0.00	0.50	0.37	0.00	0.00	0.00	0.00	0.49	0.22	0.00	0.00	0.48	3.12	0.34	0.36	0.47	0.86	0.36	1.37	1.05	0.00	0.22	0.00	5.00	4.37	0.71	1.31	1.60	0.52	0.42	2.08	1.66	0.091111	0.479695
K	intron_retention	CLPTM1L	chr5	-	chr5:1321795-1321878				chr5:1321794-1321795;chr5:1321878-1321879		1.52	4.29	3.75	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.63	6.25	2.06	7.84	3.30	5.41	0.00	0.00	1.56	0.00	1.79	0.00	3.66	6.98	4.62	2.82	1.72	2.94	2.15	0.76	-1.39	0.898368	1.000000
K	intron_retention	ARRDC1	chr9	+	chr9:140508222-140508483				chr9:140508221-140508222;chr9:140508483-140508484		4.08	3.53	14.89	NA	3.23	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.41	5.56	0.00	6.38	0.00	10.00	6.12	10.00	6.25	0.00	0.00	16.00	11.76	0.00	5.00	12.50	0.00	0.00	5.10	5.10	0.610248	1.000000
N	jcn_only_AA	ANKRD13D	chr11	+	chr11:67067595-67068460	chr11:67067595-67068219		chr11:67068220-67068460	chr11:67068460-67068461		1.09	0.00	0.76	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	6.67	0.00	NA	0.00	NA	0.84	0.00	1.47	0.00	2.33	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.00	0.00	0.373843	0.663989
N	jcn_only_AA	LILRA6,LILRB3	chr19	-	chr19:54722675-54722997;chr19:54722708-54722997	chr19:54722736-54722997		chr19:54722675-54722707;chr19:54722708-54722735	chr19:54722674-54722675;chr19:54722707-54722708		8.96	0.00	10.14	16.42	7.14	11.97	5.00	3.56	2.75	5.71	11.54	6.49	0.00	4.66	6.25	3.92	0.00	2.50	12.90	7.79	7.45	7.04	13.73	11.46	0.00	7.07	9.94	7.97	7.14	7.08	9.32	7.95	NA	11.54	0.00	12.43	0.00	7.43	7.43	0.272458	0.663989
N	alternative_acceptor	TNFSF12,TNFSF12-TNFSF13	chr17	+	chr17:7452630-7452790	chr17:7452630-7452787		chr17:7452788-7452790	chr17:7452790-7452791		5.00	0.00	0.00	NA	9.09	NA	6.25	0.00	8.33	0.00	3.77	0.00	2.70	6.67	7.69	5.26	8.16	0.00	10.00	8.33	NA	NA	4.76	NA	0.00	0.00	6.67	NA	4.35	NA	NA	NA	8.33	NA	0.00	0.00	4.47	5.00	0.53	0.828436	0.940678
K	alternative_acceptor	EWSR1	chr22	+	chr22:29684776-29687553	chr22:29684776-29687550		chr22:29687551-29687553	chr22:29687553-29687554		46.15	31.82	55.36	42.11	32.50	36.36	23.68	28.89	38.71	30.00	26.92	31.82	29.41	34.15	33.33	42.50	34.78	38.46	33.33	39.47	43.75	36.00	45.07	38.10	NA	41.82	44.00	40.85	46.43	39.08	37.70	47.54	37.50	50.00	59.65	52.94	31.82	38.59	6.77	0.070489	0.585944
K	jcn_only_AD	NIPBL	chr5	+	chr5:37064081-37064628	chr5:37064122-37064628		chr5:37064081-37064121	chr5:37064080-37064081		21.43	0.00	18.42	26.67	21.43	27.27	28.57	15.38	37.50	NA	33.33	29.41	21.43	NA	35.71	NA	17.65	30.77	16.67	18.52	28.57	21.43	22.22	33.33	0.00	28.00	18.52	18.75	18.18	27.27	24.14	24.39	20.00	18.18	39.39	24.32	18.34	21.43	3.09	0.226349	0.657607
N	alternative_acceptor	CC2D1A,SPINT2	chr19	+	chr19:14041103-14041187	chr19:14041103-14041169		chr19:14041170-14041187	chr19:14041187-14041188		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.96	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	8.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.492918	0.791230
N	intron_retention	RPL28	chr19	+	chr19:55899417-55899614				chr19:55899416-55899417;chr19:55899614-55899615		33.33	27.08	41.67	31.58	23.40	43.00	NA	NA	NA	NA	NA	NA	NA	10.00	10.00	NA	9.09	0.00	29.79	46.67	23.53	50.00	46.67	53.85	19.19	13.64	42.86	41.67	26.67	41.18	56.00	54.17	36.36	46.15	54.55	50.00	28.43	33.33	4.89	0.714368	1.000000
N	alternative_acceptor	ARHGEF10L,SEPN1	chr1	+	chr1:18021776-18023342	chr1:18021776-18022076		chr1:18022077-18023342	chr1:18023342-18023343		6.67	6.00	7.29	9.52	7.29	3.92	0.00	0.93	1.23	1.03	1.41	1.85	1.43	0.88	2.78	1.47	1.01	2.41	3.12	6.57	5.00	11.90	10.26	11.21	4.00	5.64	6.47	7.56	7.83	7.97	3.45	4.49	2.86	9.62	7.35	8.06	2.99	4.54	1.55	0.437166	0.747010
N	jcn_only_AA	DYNLL1	chr12	+	chr12:120934357-120935922;chr12:120934357-120935852;chr12:120934357-120935637	chr12:120934357-120935875		chr12:120935638-120935852;chr12:120935853-120935875;chr12:120935876-120935922	chr12:120935852-120935853;chr12:120935875-120935876;chr12:120935922-120935923		99.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.71	100.00	100.00	100.00	99.71	100.00	99.84	99.74	100.00	96.02	95.37	93.79	99.65	99.42	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.72	94.38	95.02	99.67	100.00	100.00	100.00	99.59	-0.41	0.836857	0.935389
N	cassette	DGUOK	chr2	+	chr2:74174016-74185272;chr2:74174034-74185272;chr2:74177860-74185272;chr2:74154180-74185272	chr2:74177860-74184251,chr2:74154180-74184251,chr2:74174034-74184251,chr2:74174016-74184251;chr2:74184368-74185272		chr2:74184252-74184367			22.94	30.00	22.45	35.62	33.33	28.72	37.78	41.18	28.12	42.86	37.21	40.00	37.29	42.86	37.10	45.71	40.48	33.33	23.19	27.14	25.55	45.71	34.62	32.35	30.23	27.42	30.91	47.06	45.59	45.16	18.67	25.00	23.40	37.70	30.14	30.88	30.12	27.28	-2.84	0.954666	0.987421
N	cassette	TRPV2	chr17	+	chr17:16335165-16336887;chr17:16335165-16338203;chr17:16332297-16340102;chr17:16332297-16338203;chr17:16335165-16340102;chr17:16332297-16336887	chr17:16332297-16335279,chr17:16335165-16335279;chr17:16335615-16340102,chr17:16335615-16338203,chr17:16335615-16336887		chr17:16335280-16335614			79.31	88.24	79.07	95.12	81.18	94.12	96.49	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	97.75	97.56	100.00	85.44	92.31	95.81	89.47	87.06	100.00	93.33	95.24	82.69	98.41	85.86	98.73	89.91	100.00	87.16	96.05	92.86	95.69	90.78	93.78	2.99	0.695387	0.887851
N	jcn_only_AA	ATXN2L	chr16	+	chr16:28846721-28846866;chr16:28846721-28846875;chr16:28846721-28846933	chr16:28846721-28846869		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		87.69	100.00	84.21	86.96	89.47	NA	84.85	88.89	90.68	86.32	85.11	84.85	75.95	74.32	73.28	82.14	75.97	83.33	83.33	84.75	86.11	82.05	84.38	82.86	100.00	82.46	88.89	82.69	92.98	79.49	76.92	74.04	63.16	66.67	70.37	72.62	84.09	83.60	-0.49	0.754726	0.890641
N	alternative_acceptor	SELO	chr22	+	chr22:50649341-50654145	chr22:50649341-50650896		chr22:50650897-50654145	chr22:50654145-50654146		4.44	1.41	12.00	0.00	2.70	0.00	0.00	1.89	2.86	0.00	0.00	NA	4.17	1.92	4.88	4.17	4.35	0.00	2.38	2.70	2.44	7.14	5.26	5.26	2.08	5.26	2.78	3.70	3.33	3.70	2.50	4.35	0.00	6.45	5.56	8.16	1.75	2.60	0.85	0.125898	0.614666
K	intron_retention	SIRT7	chr17	-	chr17:79872044-79872169				chr17:79872043-79872044;chr17:79872169-79872170		14.29	9.35	16.13	7.32	13.24	17.24	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	8.57	0.00	4.55	NA	7.50	9.80	10.39	11.43	9.48	14.52	12.77	10.29	13.79	8.11	12.07	11.90	19.29	14.94	12.77	14.29	13.92	16.48	8.43	10.04	1.62	0.927545	1.000000
K	intron_retention		chr19	-	chr19:36501948-36502305				chr19:36501947-36501948;chr19:36502305-36502306		0.00	21.05	21.43	NA	6.25	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	NA	12.50	0.00	NA	8.33	NA	0.00	14.29	10.53	NA	0.00	NA	16.67	9.68	0.00	NA	10.00	18.18	0.00	13.39	13.39	0.961410	1.000000
K	alternative_last_exon	PFKP,RP11-298E9.7	chr10	+	chr10:3178031-3179734,chr10:3178031-3182563;chr10:3178031-3186047	chr10:3178031-3178641	chr10:3186048-3186178	chr10:3178642-3178994			100.00	100.00	96.77	98.91	100.00	95.12	100.00	95.59	96.55	98.11	100.00	97.65	95.00	98.21	96.94	96.63	100.00	100.00	93.75	100.00	95.40	94.83	97.30	94.05	100.00	100.00	98.08	97.47	98.28	98.54	100.00	100.00	95.65	98.59	100.00	97.21	97.83	100.00	2.17	0.293817	0.491468
K	intron_retention	RNF31,RP11-468E2.4	chr14	+	chr14:24621202-24624365				chr14:24621201-24621202;chr14:24624365-24624366		4.11	0.00	8.33	NA	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	3.57	0.00	NA	1.67	3.33	0.00	3.23	3.23	5.88	1.92	0.00	0.00	0.00	0.00	3.28	4.11	0.00	2.56	4.35	4.55	0.00	2.15	2.15	0.662546	1.000000
K	jcn_only_AA	YIPF4	chr2	+	chr2:32526565-32532172	chr2:32526565-32530557		chr2:32530558-32532172	chr2:32532172-32532173		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	94.74	100.00	100.00	100.00	94.12	96.08	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	S100A11	chr1	-	chr1:152006277-152009628;chr1:152006277-152020297	chr1:152006277-152009388		chr1:152009389-152009628;chr1:152009629-152020297	chr1:152009628-152009629;chr1:152020297-152020298		100.00	100.00	100.00	96.55	92.11	89.19	100.00	100.00	100.00	100.00	100.00	97.33	100.00	100.00	97.67	100.00	100.00	100.00	91.67	93.18	97.56	100.00	95.45	100.00	100.00	95.24	96.77	100.00	91.89	98.11	93.48	88.57	96.43	92.68	96.55	94.03	100.00	97.62	-2.38	0.610100	0.816192
K	cassette	UBE2F	chr2	+	chr2:238903452-238939196;chr2:238903452-238933982	chr2:238903452-238925174;chr2:238925276-238939196,chr2:238925276-238933982		chr2:238925175-238925275			76.79	77.14	80.65	85.71	84.00	88.89	91.67	86.75	85.71	93.33	83.72	90.57	88.10	81.36	85.11	82.35	92.31	85.29	100.00	74.29	86.21	75.00	76.92	77.78	100.00	79.55	74.36	83.33	89.29	92.31	76.67	76.00	85.71	88.89	82.35	84.29	89.88	78.17	-11.71	0.025931	0.412736
N	cassette	SAT2	chr17	-	chr17:7530545-7530870;chr17:7530112-7530887;chr17:7530112-7530874;chr17:7530545-7530887	chr17:7530112-7530680,chr17:7530545-7530680;chr17:7530733-7530874,chr17:7530733-7530870,chr17:7530733-7530887		chr17:7530681-7530732			96.04	89.09	90.70	100.00	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.26	100.00	100.00	100.00	100.00	93.42	94.81	89.61	87.50	92.41	100.00	93.59	96.36	100.00	100.00	96.51	96.97	85.51	89.71	83.72	94.12	93.75	100.00	93.50	96.20	2.70	0.558133	0.823680
K	jcn_only_AA	MRPL47	chr3	-	chr3:179320526-179322314	chr3:179320586-179322314		chr3:179320526-179320585	chr3:179320525-179320526		95.45	100.00	96.30	100.00	100.00	81.82	100.00	100.00	100.00	98.59	96.88	100.00	97.96	100.00	100.00	96.49	97.87	98.00	NA	95.45	95.83	96.88	95.83	96.77	NA	100.00	100.00	96.00	100.00	100.00	94.12	95.65	90.91	97.14	100.00	96.97	98.98	97.72	-1.25	0.911493	0.969359
N	jcn_only_AA	UNC13D	chr17	-	chr17:73827499-73829046;chr17:73827343-73829046	chr17:73827430-73829046		chr17:73827343-73827429;chr17:73827430-73827498	chr17:73827342-73827343;chr17:73827429-73827430		86.05	100.00	93.33	100.00	96.30	NA	100.00	100.00	100.00	100.00	100.00	90.91	100.00	97.85	100.00	100.00	100.00	100.00	96.43	93.07	100.00	88.89	100.00	100.00	100.00	95.65	96.00	100.00	100.00	100.00	94.23	92.41	100.00	96.77	93.94	94.29	100.00	94.94	-5.06	0.054192	0.663989
K	intron_retention		chr19	+	chr19:7606954-7607446				chr19:7606953-7606954;chr19:7607446-7607447		3.28	0.00	6.25	NA	NA	NA	0.00	0.00	0.00	0.00	4.00	0.00	0.00	1.64	0.00	0.00	0.00	NA	NA	0.00	NA	NA	7.69	NA	0.00	4.76	7.69	NA	0.00	NA	0.00	7.41	NA	0.00	0.00	0.00	0.00	0.82	0.82	0.448152	1.000000
N	alternative_acceptor		chr2	+	chr2:64117320-64118224;chr2:64117320-64118217	chr2:64117320-64118253		chr2:64118218-64118224;chr2:64118225-64118253	chr2:64118224-64118225;chr2:64118253-64118254		100.00	100.00	99.60	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.25	100.00	100.00	100.00	86.11	100.00	100.00	100.00	100.00	100.00	99.08	99.55	100.00	99.18	100.00	100.00	100.00	100.00	0.00	0.393894	0.711542
N	jcn_only_AA	NAGLU	chr17	+	chr17:40693225-40695218;chr17:40693225-40695045	chr17:40693225-40695101		chr17:40695046-40695101;chr17:40695102-40695218	chr17:40695101-40695102;chr17:40695218-40695219		NA	0.00	NA	NA	0.00	NA	1.16	3.12	0.00	3.03	2.78	0.00	1.75	0.00	0.00	3.45	5.26	4.76	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	5.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.58	0.00	-0.58	0.955581	0.984403
N	jcn_only_AD	CARD16	chr11	-	chr11:104915386-104915522;chr11:104915386-104915917	chr11:104915386-104916017		chr11:104915523-104915917;chr11:104915918-104916017	chr11:104915917-104915918;chr11:104916017-104916018		74.19	92.31	84.38	66.67	91.67	78.95	100.00	86.96	92.31	85.71	88.00	85.19	100.00	84.85	NA	72.22	100.00	88.24	100.00	NA	100.00	93.33	100.00	81.25	100.00	85.00	89.74	76.60	96.88	79.41	93.10	91.14	100.00	81.82	NA	80.95	100.00	85.00	-15.00	0.007170	0.214369
K	cassette	RABEP2	chr16	-	chr16:28917081-28917339	chr16:28917081-28917187;chr16:28917200-28917339		chr16:28917188-28917199			100.00	95.12	83.33	94.74	94.74	80.77	95.24	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	100.00	100.00	NA	94.74	91.67	100.00	90.91	92.31	NA	100.00	100.00	96.00	94.12	96.43	95.00	88.89	88.46	92.31	83.33	93.33	100.00	95.18	100.00	4.82	0.834605	0.944391
K	intron_retention	ALKBH6	chr19	-	chr19:36501586-36501795				chr19:36501585-36501586;chr19:36501795-36501796		12.50	16.67	18.75	25.00	18.52	NA	NA	NA	9.09	10.00	0.00	NA	0.00	8.33	18.75	NA	6.67	NA	20.69	16.67	23.33	NA	20.00	NA	17.65	13.04	19.23	NA	25.00	NA	16.67	27.27	20.00	18.18	NA	25.00	17.65	13.04	-4.61	0.998777	1.000000
N	alternative_donor	MOV10	chr1	+	chr1:113241101-113241336	chr1:113241231-113241336		chr1:113241101-113241230	chr1:113241100-113241101		8.21	3.45	6.98	NA	6.67	6.67	0.00	3.62	1.14	NA	5.00	3.70	0.00	1.37	4.07	5.00	0.00	7.14	0.00	4.96	5.26	NA	10.00	12.82	7.14	7.14	5.00	9.52	7.69	7.14	7.64	8.24	NA	14.29	5.00	14.61	0.00	6.05	6.05	0.096934	0.495257
K	intron_retention	SYK	chr9	+	chr9:93640063-93641045				chr9:93640062-93640063;chr9:93641045-93641046		4.17	14.29	1.79	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	5.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	3.12	0.00	0.00	0.00	0.00	0.732426	1.000000
K	alternative_donor	RALGDS	chr9	-	chr9:135975770-135976906	chr9:135975770-135975882		chr9:135975883-135976906	chr9:135976906-135976907		18.37	12.12	21.43	10.00	9.09	NA	4.76	6.25	0.00	2.04	3.70	0.00	11.11	11.11	7.14	6.35	5.56	3.70	8.33	18.18	16.00	19.40	18.75	23.81	NA	18.52	20.93	18.52	18.18	16.67	23.08	17.95	14.29	17.95	23.40	22.35	11.11	18.27	7.16	0.086577	0.475124
K	intron_retention		chr16	.	chr16:2304065-2305585				chr16:2304064-2304065;chr16:2305585-2305586		3.85	4.88	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	7.89	0.00	2.44	1.75	0.00	0.00	0.00	0.00	0.975160	1.000000
N	jcn_only_AD	SNX3	chr6	-	chr6:108544250-108581963;chr6:108544250-108582011	chr6:108544250-108582029		chr6:108581964-108582011;chr6:108582012-108582029	chr6:108582011-108582012;chr6:108582029-108582030		12.90	11.69	7.55	0.00	7.14	NA	6.63	5.28	6.45	4.50	5.81	5.70	7.65	5.35	6.01	4.47	6.40	7.51	23.08	8.79	7.69	7.14	7.66	11.32	NA	6.99	8.42	4.62	5.93	8.70	9.60	12.06	0.00	11.11	9.04	9.91	7.65	7.89	0.24	0.695931	0.845069
K	cassette	TMEM50B	chr21	-	chr21:34805110-34811520	chr21:34805110-34809189;chr21:34809300-34811520		chr21:34809190-34809299			69.81	50.35	69.77	68.18	67.09	62.71	100.00	95.45	81.25	NA	92.31	NA	64.29	100.00	82.35	100.00	100.00	NA	55.56	74.42	59.72	85.29	77.27	91.18	37.27	81.82	67.74	83.33	80.43	84.44	62.16	60.42	39.05	73.53	84.62	70.97	52.95	78.12	25.17	0.073008	0.634271
K	cassette	TNFSF12-TNFSF13,TNFSF13	chr17	+	chr17:7463020-7463365	chr17:7463020-7463162;chr17:7463211-7463365		chr17:7463163-7463210			89.91	96.61	90.48	NA	86.49	NA	95.24	92.36	92.31	89.33	91.74	95.65	96.00	89.90	93.33	92.11	93.25	94.95	78.95	88.30	91.30	88.24	85.26	84.78	82.35	92.86	87.88	86.67	90.44	92.73	80.77	100.00	81.82	90.14	87.34	92.52	88.79	89.91	1.11	0.894846	0.967641
K	jcn_only_AD	NDUFS8	chr11	+	chr11:67798201-67799618;chr11:67798429-67799618;chr11:67798345-67799618	chr11:67798618-67799618		chr11:67798201-67798344;chr11:67798345-67798428;chr11:67798429-67798617	chr11:67798200-67798201;chr11:67798344-67798345;chr11:67798428-67798429		0.00	0.00	0.00	0.00	3.77	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	4.29	0.00	2.08	NA	0.00	NA	0.00	0.00	0.00	NA	6.67	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.480113	0.726209
N	jcn_only_AD	HNMT	chr2	+	chr2:138759765-138762701;chr2:138761703-138762701	chr2:138759914-138762701		chr2:138759765-138759913;chr2:138759914-138761702	chr2:138759764-138759765;chr2:138759913-138759914		16.67	0.00	14.29	NA	NA	NA	5.00	8.72	10.20	5.41	7.69	8.57	5.34	8.26	0.00	7.35	9.09	11.11	NA	11.11	13.33	21.43	20.00	22.22	33.33	16.22	12.08	11.76	15.25	0.00	12.50	18.97	18.18	10.53	11.54	16.67	5.34	11.80	6.46	0.985027	0.993847
K	intron_retention	NAGK	chr2	+	chr2:71299882-71300611				chr2:71299881-71299882;chr2:71300611-71300612		6.06	3.29	7.69	0.00	1.12	3.64	1.57	1.51	0.59	0.00	1.15	0.39	2.92	1.84	2.27	2.48	1.67	1.56	2.82	2.58	1.43	1.23	2.08	4.48	7.56	4.81	6.31	4.03	1.91	1.29	2.84	4.55	2.29	5.50	4.97	4.19	2.87	2.71	-0.16	0.994326	1.000000
K	intron_retention		chr16	-	chr16:67189558-67190412				chr16:67189557-67189558;chr16:67190412-67190413		17.95	15.00	36.00	14.29	7.14	9.09	0.00	1.56	0.00	0.00	0.00	0.00	0.00	2.50	1.04	3.85	NA	6.67	NA	19.35	7.41	15.38	5.26	21.05	28.57	8.20	21.88	6.45	0.00	9.21	8.33	11.54	NA	23.08	NA	12.68	7.50	8.27	0.77	0.502113	1.000000
K	cassette	SRSF11	chr1	+	chr1:70712591-70715634	chr1:70712591-70712799;chr1:70712833-70715634		chr1:70712800-70712832			8.11	0.00	6.32	NA	6.67	NA	0.00	0.00	1.06	0.86	0.00	2.44	0.00	0.00	0.00	1.06	1.04	0.00	NA	5.88	0.00	4.69	5.26	3.70	0.00	2.00	1.54	3.64	4.76	2.08	11.54	4.65	0.00	3.66	2.67	3.20	0.00	3.94	3.94	0.062915	0.621473
K	cassette	SEP15	chr1	-	chr1:87329289-87346344	chr1:87329289-87333735;chr1:87333786-87346344		chr1:87333736-87333785			86.27	96.39	87.74	95.83	93.15	86.67	94.46	92.16	86.39	95.29	96.65	95.65	93.53	89.86	90.62	93.89	93.66	94.41	88.89	86.79	80.00	94.12	93.05	90.37	100.00	84.06	89.16	95.00	93.75	94.95	76.70	78.81	91.18	93.46	92.98	92.83	94.00	86.53	-7.47	0.014905	0.369835
N	alternative_acceptor	LAIR1	chr19	-	chr19:54868229-54868536	chr19:54868432-54868536		chr19:54868229-54868431	chr19:54868228-54868229		1.41	0.76	2.62	3.12	3.06	13.33	0.78	0.51	0.72	0.34	0.44	0.68	0.70	0.68	1.49	0.97	0.42	1.27	7.50	1.33	2.89	2.50	1.75	1.33	10.53	1.74	2.15	3.12	3.08	3.85	1.33	1.23	2.50	2.14	2.05	2.03	1.64	1.33	-0.31	0.187690	0.660713
K	intron_retention		chr7	+	chr7:100027137-100028652				chr7:100027136-100027137;chr7:100028652-100028653		100.00	85.71	93.48	NA	100.00	NA	97.50	100.00	100.00	100.00	93.75	100.00	95.24	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	NA	100.00	97.83	NA	100.00	100.00	100.00	96.37	100.00	3.63	0.332571	1.000000
N	alternative_acceptor	ZNF710	chr15	+	chr15:90617523-90622891	chr15:90617523-90617853		chr15:90617854-90622891	chr15:90622891-90622892		10.26	23.33	15.69	NA	NA	NA	8.62	1.64	2.22	2.50	7.46	1.72	10.34	1.85	2.17	2.56	5.56	2.22	NA	5.26	NA	NA	22.22	8.00	50.00	8.70	16.28	8.33	26.32	NA	8.33	7.14	NA	15.38	9.68	7.50	16.84	6.79	-10.04	0.171580	0.660713
N	jcn_only_AD	IFI6	chr1	-	chr1:27995047-27995759;chr1:27995047-27995810;chr1:27995047-27995731;chr1:27995047-27995743	chr1:27995047-27995755		chr1:27995732-27995743;chr1:27995744-27995755;chr1:27995756-27995759;chr1:27995760-27995810	chr1:27995743-27995744;chr1:27995755-27995756;chr1:27995759-27995760;chr1:27995810-27995811		84.57	86.57	85.10	83.62	82.50	80.56	84.97	82.66	83.19	82.02	82.42	80.33	83.48	81.69	82.17	81.45	82.29	80.95	81.34	82.57	79.61	82.50	84.85	80.99	83.66	84.30	84.39	80.73	86.88	81.68	84.60	84.72	83.99	82.73	84.54	82.60	83.82	83.48	-0.34	0.506074	0.745124
K	jcn_only_AD	MRPL28	chr16	-	chr16:420226-420498;chr16:420226-420484	chr16:420226-420443		chr16:420444-420484;chr16:420485-420498	chr16:420484-420485;chr16:420498-420499		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	BAIAP2	chr17	+	chr17:79077909-79078313	chr17:79077909-79078310		chr17:79078311-79078313	chr17:79078313-79078314		0.00	0.00	NA	NA	4.65	NA	2.56	0.00	0.00	3.70	1.75	0.00	2.94	0.00	NA	4.76	5.77	NA	8.33	0.00	NA	6.67	4.84	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	3.70	4.00	0.00	7.14	2.75	0.00	-2.75	0.066981	0.584083
N	cassette	EIF2B5	chr3	+	chr3:183860931-183861886	chr3:183860931-183861229;chr3:183861354-183861886		chr3:183861230-183861353			100.00	100.00	100.00	100.00	97.44	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	81.25	100.00	96.55	100.00	100.00	100.00	100.00	100.00	0.00	0.447754	0.750082
N	jcn_only_AA	TOR3A	chr1	+	chr1:179057225-179063227;chr1:179057225-179059895	chr1:179057225-179060799					5.88	0.00	6.25	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	7.69	2.50	0.00	NA	16.67	9.09	NA	0.00	NA	0.00	NA	0.00	8.33	0.00	9.09	0.00	0.00	0.00	0.230716	0.663989
K	jcn_only_AD	ROMO1	chr20	+	chr20:34287417-34287554;chr20:34287379-34287554	chr20:34287374-34287554		chr20:34287374-34287378;chr20:34287379-34287416	chr20:34287373-34287374;chr20:34287378-34287379		38.89	30.87	34.09	35.82	33.04	27.60	29.35	31.75	30.19	27.63	31.03	37.18	27.42	29.17	37.10	30.89	25.66	25.00	32.80	33.93	31.33	37.50	37.50	22.92	35.58	33.33	30.95	31.11	31.08	27.16	39.74	37.68	30.43	29.73	24.56	27.87	30.65	33.63	2.98	0.130536	0.657607
K	alternative_acceptor	PABPC4	chr1	-	chr1:40028053-40029285	chr1:40028089-40029285		chr1:40028053-40028088	chr1:40028052-40028053		96.00	94.17	96.43	95.83	95.05	92.00	97.96	93.33	94.74	98.82	100.00	96.08	97.67	100.00	95.00	97.09	97.59	95.35	100.00	95.45	95.24	98.44	96.88	96.15	92.00	95.00	94.44	97.73	95.59	96.43	94.55	96.77	91.53	97.62	94.12	93.33	95.92	95.22	-0.70	0.924204	0.978996
K	intron_retention	NCKAP1L	chr12	+	chr12:54912757-54912970				chr12:54912756-54912757;chr12:54912970-54912971		2.20	3.51	5.41	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.00	0.75	0.00	0.41	0.00	NA	1.01	0.00	0.00	2.65	0.00	16.67	2.61	3.92	0.00	1.16	0.00	0.00	2.78	NA	4.05	2.31	0.00	1.91	0.51	-1.41	0.568451	1.000000
N	jcn_only_AD	PLXND1	chr3	-	chr3:129288801-129289432;chr3:129288801-129289628	chr3:129288801-129289721		chr3:129289433-129289628;chr3:129289629-129289721	chr3:129289628-129289629;chr3:129289721-129289722		1.59	5.05	0.85	NA	0.00	NA	0.00	0.00	0.00	0.56	0.00	0.00	0.00	0.00	0.77	0.79	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.537716	0.758185
K	intron_retention		chr1	+	chr1:32794762-32796178				chr1:32794761-32794762;chr1:32796178-32796179		12.07	9.52	13.33	NA	0.00	NA	0.00	0.00	2.86	0.00	6.90	0.00	2.38	0.00	8.82	0.00	0.00	0.00	NA	8.62	3.45	8.00	5.66	8.70	NA	7.69	13.33	0.00	6.67	16.67	6.06	9.30	0.00	11.90	10.53	8.62	1.19	6.88	5.69	0.764378	1.000000
K	jcn_only_AA	GBA2	chr9	-	chr9:35737445-35737744	chr9:35737602-35737744		chr9:35737445-35737601	chr9:35737444-35737445		0.00	0.00	15.79	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	13.33	4.55	0.00	8.33	0.00	0.00	15.38	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.179256	0.663989
K	jcn_only_AD	CSNK1G2	chr19	+	chr19:1979618-1979750	chr19:1979643-1979750		chr19:1979618-1979642	chr19:1979617-1979618		92.42	100.00	92.96	NA	94.74	NA	100.00	98.46	97.06	94.92	95.96	97.37	97.47	96.72	94.12	93.02	95.37	100.00	100.00	92.86	100.00	100.00	93.75	86.67	100.00	93.88	98.44	100.00	97.30	86.67	94.23	94.03	93.55	96.00	94.34	88.64	100.00	94.06	-5.94	0.026837	0.374446
N	cassette	ABR	chr17	-	chr17:914104-915085	chr17:914104-914384;chr17:914629-915085		chr17:914385-914628			1.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.52	1.75	0.00	0.00	0.00	0.82	0.00	1.02	NA	1.16	0.00	0.00	0.73	0.80	8.33	1.25	0.00	1.85	0.00	0.00	0.00	0.00	0.00	1.28	1.10	1.66	0.00	0.50	0.50	0.548913	0.818909
K	cassette	OARD1	chr6	-	chr6:41035177-41037814	chr6:41035177-41036579;chr6:41036693-41037814		chr6:41036580-41036692			75.00	100.00	82.61	NA	72.73	NA	85.00	76.92	80.95	NA	69.23	NA	90.48	75.00	61.54	NA	76.92	NA	63.64	84.62	NA	NA	85.71	NA	NA	NA	100.00	50.00	61.54	NA	NA	80.95	NA	NA	65.00	69.57	87.74	75.96	-11.78	0.445019	0.748219
K	alternative_acceptor	ALG13,NGFRAP1	chrX	+	chrX:102632035-102632437	chrX:102632035-102632390		chrX:102632391-102632437	chrX:102632437-102632438		8.51	5.74	3.57	0.00	8.06	3.12	7.14	8.33	9.09	7.89	11.63	2.56	7.02	11.76	16.13	8.14	9.15	11.24	4.94	6.67	7.25	5.56	4.12	3.64	0.00	10.71	5.17	7.32	6.82	10.00	0.00	7.69	2.56	5.71	2.63	6.78	5.34	8.42	3.08	0.166041	0.660713
N	jcn_only_AA	GPNMB	chr7	+	chr7:23300393-23313139;chr7:23300393-23302922;chr7:23300393-23306099	chr7:23300393-23306135					81.84	84.58	79.69	83.08	81.66	92.31	80.62	75.35	78.00	80.66	80.87	81.02	81.27	74.85	76.12	81.12	82.19	80.46	79.75	79.13	80.56	82.52	80.03	81.73	100.00	77.54	75.11	81.24	81.12	84.85	82.04	79.34	84.16	84.21	84.64	83.96	82.72	78.34	-4.38	0.090782	0.663989
N	alternative_acceptor		chr9	+	chr9:35608507-35608842;chr9:35608507-35609103	chr9:35608507-35608858		chr9:35608843-35608858;chr9:35608859-35609103	chr9:35608858-35608859;chr9:35609103-35609104		100.00	100.00	100.00	100.00	100.00	NA	97.62	100.00	100.00	94.20	96.25	94.44	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	98.39	100.00	95.83	100.00	100.00	100.00	98.44	100.00	100.00	100.00	0.00	0.539747	0.820810
K	intron_retention	ZDHHC4	chr7	+	chr7:6623063-6624646				chr7:6623062-6623063;chr7:6624646-6624647		5.88	6.25	6.25	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.03	6.25	3.85	7.14	0.00	NA	0.00	6.67	0.00	NA	3.70	NA	NA	0.00	4.88	NA	0.00	0.00	7.69	3.33	0.00	5.26	3.57	0.00	0.00	6.06	6.06	0.402179	1.000000
K	cassette	BCKDK	chr16	+	chr16:31121821-31122411	chr16:31121821-31122008;chr16:31122083-31122411		chr16:31122009-31122082			91.67	88.46	77.50	80.00	88.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	91.43	93.55	90.00	92.11	83.33	64.29	92.31	89.58	100.00	97.30	100.00	82.14	89.47	NA	91.67	90.00	89.66	93.33	91.99	-1.34	0.624050	0.863201
K	intron_retention		chr11	+	chr11:65343878-65346548				chr11:65343877-65343878;chr11:65346548-65346549		7.22	0.00	7.60	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.40	0.00	0.00	0.00	0.00	NA	5.81	2.56	0.00	0.00	0.00	9.68	3.42	4.17	0.00	0.00	0.00	3.45	8.05	5.88	9.68	5.17	9.30	0.78	3.44	2.66	0.996000	1.000000
K	intron_retention	GDI1	chrX	+	chrX:153669543-153669969				chrX:153669542-153669543;chrX:153669969-153669970		7.08	0.00	7.48	6.25	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.81	0.88	1.30	0.00	15.79	5.31	4.26	6.00	5.77	4.81	24.14	4.13	6.90	0.96	3.79	1.22	10.47	8.87	8.00	4.65	6.82	5.46	4.59	4.72	0.12	0.668818	1.000000
K	intron_retention	VPS28	chr8	-	chr8:145649516-145649597				chr8:145649515-145649516;chr8:145649597-145649598		1.19	2.81	3.64	2.86	4.92	3.16	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.18	4.41	3.80	1.75	3.82	4.55	3.08	3.57	2.81	2.46	4.35	2.03	10.77	3.94	4.26	3.28	1.06	1.10	2.95	2.38	-0.57	0.863344	1.000000
N	cassette	ACAP1	chr17	+	chr17:7251795-7253445	chr17:7251795-7253263;chr17:7253374-7253445		chr17:7253264-7253373			100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	87.50	NA	100.00	NA	NA	NA	85.19	93.33	NA	NA	NA	NA	80.00	NA	75.00	NA	NA	NA	86.34	96.66	10.32	0.393547	0.710242
N	jcn_only_AD	UFD1L	chr22	-	chr22:19462624-19462992;chr22:19462624-19463018	chr22:19462624-19466620		chr22:19462993-19463018;chr22:19463019-19466620	chr22:19463018-19463019;chr22:19466620-19466621		5.41	0.00	2.78	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.732288	0.861015
K	intron_retention	PLXND1	chr3	-	chr3:129280747-129281629				chr3:129280746-129280747;chr3:129281629-129281630		1.20	2.42	1.66	0.00	2.17	NA	0.30	0.00	0.00	0.00	0.66	0.00	0.49	0.00	0.75	0.78	0.30	0.00	2.38	0.00	1.92	0.00	0.60	3.17	3.91	0.00	1.02	0.00	0.95	0.00	0.00	0.00	5.41	0.00	1.83	0.00	2.40	0.00	-2.40	0.162766	1.000000
K	cassette	ARFGAP1	chr20	+	chr20:61908004-61909468	chr20:61908004-61908556;chr20:61908658-61909468		chr20:61908557-61908657			100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	94.12	NA	92.86	95.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	95.65	93.94	100.00	100.00	100.00	0.00	0.391002	0.709410
N	cassette	APOPT1,RP11-73M18.2	chr14	+	chr14:104029717-104053610;chr14:104029462-104053610;chr14:104029721-104053610	chr14:104029717-104037959,chr14:104029462-104037959,chr14:104029721-104037959;chr14:104038158-104053610		chr14:104037960-104038157			75.00	70.00	100.00	80.00	87.50	NA	82.76	83.33	71.43	80.77	86.96	80.00	84.85	90.00	78.26	72.97	86.67	84.62	59.09	69.23	69.23	86.67	86.96	83.33	NA	NA	73.33	78.57	88.24	85.71	NA	90.00	57.14	85.71	90.91	77.78	70.00	79.16	9.16	0.279820	0.709176
K	intron_retention		chr19	+	chr19:55147061-55147947				chr19:55147060-55147061;chr19:55147947-55147948		18.06	26.19	17.09	63.41	35.00	56.76	4.44	3.29	7.94	6.90	7.32	8.33	3.03	4.81	12.12	10.14	4.84	22.00	34.78	22.46	27.78	47.62	40.25	54.35	25.00	16.92	20.24	49.12	35.71	41.13	17.96	25.41	29.41	33.80	28.30	45.07	25.59	17.44	-8.15	0.823473	1.000000
N	cassette	STK40	chr1	-	chr1:36823984-36826821;chr1:36823984-36851323	chr1:36823984-36824337;chr1:36824424-36851323,chr1:36824424-36826821		chr1:36824338-36824423			93.55	50.00	85.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	99.29	NA	100.00	NA	93.62	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	NA	95.24	94.81	97.94	100.00	100.00	0.00	0.428735	0.736120
K	intron_retention	NQO2	chr6	+	chr6:3015878-3017117				chr6:3015877-3015878;chr6:3017117-3017118		5.22	1.98	6.43	0.59	1.36	0.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	0.00	2.70	0.00	1.89	0.00	0.00	5.83	3.50	1.27	0.68	1.96	0.00	4.41	0.00	2.17	2.00	1.56	0.00	0.00	0.00	0.459804	1.000000
K	jcn_only_AD	WBSCR22	chr7	+	chr7:73098232-73100965;chr7:73098331-73100965	chr7:73098135-73100965		chr7:73098135-73098231;chr7:73098232-73098330	chr7:73098134-73098135;chr7:73098231-73098232		100.00	100.00	97.96	100.00	100.00	NA	98.84	100.00	93.75	98.08	100.00	100.00	97.73	92.86	98.15	98.94	98.72	95.65	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.638777	0.818639
N	alternative_acceptor	FNBP1	chr9	-	chr9:132652826-132658116;chr9:132655518-132658116	chr9:132654367-132658116		chr9:132652826-132654366;chr9:132654367-132655517	chr9:132652825-132652826;chr9:132654366-132654367		10.00	17.39	6.45	NA	NA	18.18	1.52	4.55	2.17	0.00	0.00	2.44	1.37	0.00	1.33	0.00	0.00	3.03	23.08	6.67	NA	NA	6.67	10.53	NA	5.56	7.41	NA	0.00	NA	NA	10.00	NA	6.25	6.25	6.25	9.46	5.56	-3.90	0.403252	0.719111
K	alternative_first_exon	VMA21	chrX	+	chrX:150565530-150572102	chrX:150565834-150572102	chrX:150565271-150565529	chrX:150565676-150565833			91.67	97.22	100.00	95.00	95.24	100.00	97.73	100.00	94.12	95.35	98.36	100.00	98.61	100.00	96.15	96.49	98.59	100.00	100.00	NA	100.00	89.47	94.44	100.00	94.74	90.91	NA	95.24	97.30	100.00	100.00	100.00	97.56	89.47	96.00	96.30	97.65	100.00	2.35	0.638347	0.747175
K	jcn_only_AD	UNC13D	chr17	-	chr17:73829127-73830155	chr17:73829127-73829273		chr17:73829274-73830155	chr17:73830155-73830156		0.00	0.00	0.00	NA	0.00	NA	4.08	0.00	0.00	0.00	2.94	NA	5.88	0.00	0.00	20.00	5.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.183294	0.657607
K	jcn_only_AD	CCDC88C,HAUS4	chr14	-	chr14:23424386-23426132;chr14:23424386-23426124	chr14:23424386-23425954		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		22.22	12.90	25.71	NA	13.33	NA	11.11	11.32	19.64	0.00	7.81	10.26	8.00	17.14	10.42	20.83	12.24	0.00	0.00	17.39	26.67	NA	0.00	NA	NA	22.22	29.17	NA	9.52	NA	0.00	12.00	NA	10.00	0.00	0.00	9.55	17.27	7.71	0.153156	0.657607
N	jcn_only_AA	CCS	chr11	+	chr11:66368021-66372624;chr11:66368021-66372628	chr11:66368021-66372809		chr11:66372625-66372628;chr11:66372629-66372809	chr11:66372628-66372629;chr11:66372809-66372810		94.83	95.15	91.49	100.00	100.00	100.00	100.00	100.00	96.30	100.00	96.15	100.00	100.00	90.00	100.00	100.00	100.00	NA	100.00	95.83	97.62	100.00	97.06	NA	100.00	93.75	94.37	87.50	95.74	100.00	100.00	96.55	97.39	100.00	100.00	93.10	100.00	95.33	-4.67	0.129925	0.663989
N	intron_retention	SORBS3	chr8	+	chr8:22432238-22432338				chr8:22432237-22432238;chr8:22432338-22432339		100.00	100.00	NA	89.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	NA	93.55	98.90	100.00	100.00	100.00	98.81	100.00	94.12	97.78	100.00	100.00	0.00	0.594508	1.000000
K	cassette	NUMA1	chr11	-	chr11:71721901-71727453	chr11:71721901-71723940;chr11:71727307-71727453		chr11:71723941-71727306			97.96	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	100.00	96.97	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	97.12	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD		chr6	-	chr6:99848188-99848419;chr6:99848188-99848462	chr6:99848188-99850415		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		0.00	0.00	2.94	0.00	0.00	9.09	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	11.76	18.75	NA	0.00	16.67	0.00	0.00	6.82	8.33	0.00	22.22	16.67	16.13	14.71	8.00	0.00	0.00	0.00	5.88	5.88	0.451268	0.706312
K	intron_retention		chr6	+	chr6:31602335-31602529				chr6:31602334-31602335;chr6:31602529-31602530		7.41	0.00	3.57	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	1.28	0.00	0.00	NA	3.23	0.00	5.26	2.56	11.54	16.67	5.26	4.49	7.69	5.56	0.00	12.00	12.73	NA	6.98	9.30	11.25	0.00	4.25	4.25	0.874536	1.000000
K	intron_retention	PUF60	chr8	-	chr8:144900246-144900362				chr8:144900245-144900246;chr8:144900362-144900363		6.98	3.57	3.57	0.00	2.74	0.00	0.00	5.88	0.00	0.00	0.00	0.00	1.03	0.00	1.25	0.56	0.00	0.00	5.41	6.25	2.86	2.60	1.96	0.00	NA	0.00	1.64	1.49	4.11	1.72	5.56	8.33	2.63	1.25	3.80	0.94	2.63	5.72	3.09	0.765426	1.000000
K	intron_retention	IFFO1	chr12	-	chr12:6657327-6657590				chr12:6657326-6657327;chr12:6657590-6657591		58.82	62.20	62.50	NA	58.62	NA	19.15	14.29	13.64	17.65	16.00	NA	24.05	22.58	27.78	17.86	18.75	NA	40.62	54.17	27.59	46.15	48.67	41.67	41.18	31.03	41.30	35.48	36.29	25.00	38.89	45.95	40.91	40.00	52.50	43.48	40.77	34.96	-5.80	0.996646	1.000000
K	intron_retention	UNC93B1	chr11	-	chr11:67771269-67771417				chr11:67771268-67771269;chr11:67771417-67771418		2.22	8.11	2.36	NA	0.00	NA	0.65	1.27	0.85	0.00	0.00	0.73	1.63	1.40	2.02	0.00	0.89	2.34	0.00	3.11	5.26	0.00	1.83	2.65	0.00	2.66	2.50	5.26	1.92	6.76	2.05	1.69	0.00	0.00	1.67	2.44	0.33	2.13	1.81	0.907580	1.000000
K	intron_retention	HDAC5	chr17	-	chr17:42160041-42160132				chr17:42160040-42160041;chr17:42160132-42160133		1.12	1.38	1.30	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	6.85	3.61	0.89	0.00	2.13	0.00	0.00	0.00	0.00	0.692310	1.000000
K	intron_retention		chr10	+	chr10:75559249-75559768				chr10:75559248-75559249;chr10:75559768-75559769		20.00	28.95	22.68	NA	20.00	NA	0.00	0.00	6.06	0.00	0.00	0.00	3.70	6.45	8.33	2.63	0.00	0.00	16.67	14.00	21.74	20.00	17.24	23.81	6.67	11.32	15.62	14.29	17.14	9.52	20.00	25.00	35.71	30.77	24.39	29.23	11.67	12.66	0.99	0.914709	1.000000
N	jcn_only_AD	ARL6IP4	chr12	+	chr12:123465360-123465675;chr12:123465435-123465675;chr12:123463876-123465675;chr12:123465535-123465675	chr12:123465293-123465675		chr12:123463876-123465292;chr12:123465293-123465359;chr12:123465360-123465434;chr12:123465435-123465534	chr12:123463875-123463876;chr12:123465292-123465293;chr12:123465359-123465360;chr12:123465434-123465435		67.74	66.14	48.65	59.26	73.85	55.56	61.95	50.00	44.64	53.26	60.17	55.71	61.16	60.00	44.12	53.85	55.48	49.15	60.47	66.67	49.44	60.00	69.33	87.50	58.33	35.71	50.00	57.89	56.70	64.10	66.67	75.86	67.14	76.47	65.62	73.08	61.55	63.34	1.78	0.414376	0.676769
K	intron_retention	ARAP1	chr11	-	chr11:72403831-72404369				chr11:72403830-72403831;chr11:72404369-72404370		14.71	9.59	25.58	0.00	0.00	NA	2.17	7.55	10.53	3.23	4.88	0.00	5.00	11.11	10.91	5.71	2.70	0.00	6.45	14.29	0.00	7.69	12.50	NA	NA	10.42	7.69	8.70	6.67	19.05	0.00	13.89	0.00	8.00	25.00	25.00	5.00	10.77	5.77	0.452388	1.000000
K	jcn_only_AD	SUMF2	chr7	+	chr7:56136332-56140689	chr7:56136341-56140689		chr7:56136332-56136340	chr7:56136331-56136332		2.63	0.00	3.80	0.00	0.00	NA	2.53	4.65	1.71	3.49	1.80	1.15	3.14	0.00	2.08	0.95	0.00	3.51	0.00	0.00	10.34	0.00	3.42	1.22	0.00	0.00	3.57	0.00	3.70	0.00	0.00	0.00	0.00	2.13	1.79	1.92	0.00	0.00	0.00	0.796342	0.905075
N	alternative_first_exon	AAMDC	chr11	+	chr11:77532227-77553524,chr11:77532288-77553524,chr11:77532284-77553524;chr11:77552271-77553524	chr11:77552107-77553524	chr11:77552184-77552270	chr11:77552065-77552106			34.69	28.21	36.36	34.78	38.46	41.94	24.00	36.84	45.45	17.39	19.44	31.03	25.00	36.59	32.14	42.11	20.00	35.00	27.08	36.67	26.32	28.57	25.71	29.17	21.95	37.93	42.11	40.00	28.57	32.26	42.11	37.93	50.00	50.00	38.46	40.00	26.04	36.76	10.72	0.115305	0.287724
K	jcn_only_AD	DDX56	chr7	-	chr7:44609503-44609613	chr7:44609503-44609582		chr7:44609583-44609613	chr7:44609613-44609614		10.34	18.60	4.44	6.90	6.25	9.09	0.00	NA	3.85	0.00	0.00	0.00	0.00	NA	0.00	1.45	2.56	0.00	15.15	12.50	5.45	5.41	10.61	12.82	0.00	23.53	5.88	5.13	4.44	6.06	6.06	9.26	7.55	0.00	11.63	10.77	3.77	11.42	7.64	0.256555	0.657607
K	coord_cassette	MR1	chr1	+	chr1:181019423-181024360	chr1:181019423-181021370;chr1:181021647-181022708;chr1:181022814-181024360		chr1:181021371-181021646;chr1:181022709-181022813			100.00	NA	89.66	NA	NA	NA	100.00	100.00	100.00	91.67	93.75	100.00	100.00	100.00	98.55	100.00	100.00	100.00	100.00	96.77	100.00	NA	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.45	94.29	90.91	100.00	100.00	96.77	100.00	100.00	0.00	0.708494	0.851250
N	jcn_only_AA	BUB3	chr10	+	chr10:124922345-125072528;chr10:124922345-124924562	chr10:124922345-124923335		chr10:124923336-124924562;chr10:124924563-125072528	chr10:124924562-124924563;chr10:125072528-125072529		56.25	21.13	37.04	41.67	26.00	49.21	52.63	62.50	53.49	76.67	68.97	72.73	45.10	65.52	57.89	56.86	58.33	66.67	40.54	52.17	36.73	37.04	41.03	40.91	21.88	64.52	39.13	40.62	32.35	41.46	62.50	55.56	36.36	45.24	40.54	42.31	38.45	62.50	24.05	0.003778	0.442962
N	cassette	ANAPC16	chr10	+	chr10:73975897-73990123;chr10:73975897-73983645	chr10:73975897-73979811;chr10:73980138-73990123,chr10:73980138-73983645		chr10:73979812-73980137			33.33	38.10	32.73	41.67	36.84	46.67	34.43	35.71	30.99	41.94	38.46	41.67	34.67	54.55	31.82	23.81	43.64	52.63	36.84	40.00	46.88	35.71	34.88	31.25	62.50	33.33	33.33	31.25	31.91	36.36	30.00	32.56	50.00	42.11	41.18	42.31	37.47	34.52	-2.95	0.419023	0.728068
K	intron_retention	USF1	chr1	-	chr1:161011637-161011905				chr1:161011636-161011637;chr1:161011905-161011906		2.22	0.00	3.73	0.00	0.00	NA	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	2.22	0.00	4.35	6.67	0.00	2.30	4.44	1.54	1.82	0.00	1.43	3.27	0.00	1.92	1.37	5.06	0.00	1.28	1.28	0.324674	1.000000
N	jcn_only_AA	LPXN	chr11	-	chr11:58318354-58318537;chr11:58318118-58318537	chr11:58317620-58318537		chr11:58317620-58318117;chr11:58318118-58318353	chr11:58317619-58317620;chr11:58318117-58318118		100.00	100.00	100.00	85.19	100.00	70.00	100.00	100.00	100.00	99.02	100.00	100.00	100.00	100.00	100.00	100.00	99.57	100.00	NA	100.00	100.00	100.00	100.00	99.03	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	cassette	CAMLG	chr5	+	chr5:134074483-134086448;chr5:134077214-134086448	chr5:134077214-134079676,chr5:134074483-134079676;chr5:134079743-134086448		chr5:134079677-134079742			70.59	45.45	74.51	NA	85.71	NA	78.79	94.44	87.18	84.21	80.56	73.33	85.19	80.00	72.09	75.86	71.43	83.33	61.54	68.00	75.00	77.78	72.50	75.00	NA	79.41	86.79	NA	79.31	78.57	55.17	56.82	61.54	80.00	87.10	74.07	61.54	75.00	13.46	0.389231	0.709410
N	jcn_only_AA		chr11	+	chr11:6631267-6631386	chr11:6631267-6631378		chr11:6631379-6631386	chr11:6631386-6631387		99.11	99.18	98.13	100.00	99.09	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.12	96.05	98.07	100.00	98.67	100.00	98.41	100.00	99.35	100.00	100.00	100.00	93.94	94.94	92.86	98.84	97.38	100.00	98.80	99.56	0.76	0.791742	0.909279
N	cassette	MS4A4A	chr11	+	chr11:60064799-60073572	chr11:60064799-60068473;chr11:60068531-60073572		chr11:60068474-60068530			99.03	93.83	100.00	100.00	100.00	NA	99.15	97.52	100.00	100.00	100.00	99.39	97.87	100.00	NA	100.00	100.00	100.00	100.00	98.04	95.65	100.00	98.11	100.00	NA	100.00	100.00	96.88	100.00	97.06	100.00	89.66	100.00	100.00	100.00	97.30	99.15	99.52	0.36	0.485575	0.774333
N	jcn_only_AD	STARD10	chr11	-	chr11:72470427-72492106;chr11:72470427-72491133;chr11:72470427-72492157	chr11:72470427-72492019		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		84.62	75.71	81.25	100.00	82.05	87.50	NA	NA	100.00	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	85.11	75.00	84.21	90.48	88.89	94.74	93.33	87.50	91.89	89.47	100.00	93.33	82.61	78.26	76.67	95.45	81.25	88.24	80.89	84.62	3.73	0.594095	0.799292
K	intron_retention		chr10	+	chr10:50189524-50190553				chr10:50189523-50189524;chr10:50190553-50190554		2.44	4.04	2.94	2.86	5.71	3.70	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	2.86	0.00	5.88	0.00	0.00	0.00	0.00	4.88	2.86	7.14	3.70	0.00	2.13	0.00	6.98	2.00	0.00	0.00	0.00	0.00	0.796092	1.000000
K	cassette	S100B	chr21	-	chr21:48019417-48022190	chr21:48019417-48020194;chr21:48020289-48022190		chr21:48020195-48020288			0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.92	0.00	NA	NA	0.00	NA	0.00	7.14	0.00	NA	0.00	NA	NA	NA	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.608834	0.853757
N	alternative_acceptor	MYO9B	chr19	+	chr19:17213368-17253329;chr19:17213368-17256206	chr19:17213368-17214066		chr19:17214067-17253329;chr19:17253330-17256206	chr19:17253329-17253330;chr19:17256206-17256207		0.00	2.56	0.00	NA	NA	NA	0.00	0.00	0.00	0.70	0.53	0.00	0.68	0.00	1.03	0.87	0.43	0.00	0.00	0.00	NA	0.00	1.67	0.00	4.55	0.00	0.00	0.00	3.03	7.69	0.00	0.00	0.00	1.20	1.08	0.90	0.34	0.00	-0.34	0.150872	0.653349
N	cassette	GPR108	chr19	-	chr19:6731534-6732035;chr19:6731294-6732035	chr19:6731294-6731901,chr19:6731534-6731901;chr19:6731946-6732035		chr19:6731902-6731945			94.85	93.98	98.84	90.70	95.00	93.10	100.00	98.18	97.78	93.33	100.00	93.48	100.00	96.83	93.75	93.10	100.00	97.67	93.48	92.96	96.88	88.89	92.86	89.36	100.00	98.84	93.42	95.12	96.77	96.23	95.51	92.08	92.65	94.64	96.61	94.87	96.99	96.17	-0.82	0.785335	0.935473
K	alternative_donor	NDUFS3	chr11	+	chr11:47602156-47602386	chr11:47602175-47602386		chr11:47602156-47602174	chr11:47602155-47602156		92.86	86.00	78.57	90.00	86.21	NA	88.68	92.86	86.96	88.89	92.11	89.47	89.58	100.00	95.45	86.67	91.43	81.82	93.94	100.00	93.18	81.82	92.31	NA	97.06	100.00	86.96	90.91	90.91	83.33	85.00	87.10	87.50	94.12	92.86	83.33	89.13	96.43	7.30	0.156733	0.563271
K	cassette	CLN3	chr16	-	chr16:28498863-28500610;chr16:28499063-28500610	chr16:28499063-28499911,chr16:28498863-28499911;chr16:28499984-28500610		chr16:28499912-28499983			96.77	100.00	96.88	NA	100.00	NA	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	96.55	96.08	100.00	100.00	100.00	100.00	100.00	100.00	98.82	100.00	100.00	0.00	0.610092	0.853757
N	alternative_acceptor	FPR3	chr19	+	chr19:52298585-52356774;chr19:52298585-52347564;chr19:52298585-52342893;chr19:52298585-52326991;chr19:52298585-52304725	chr19:52298585-52326936		chr19:52304726-52326936;chr19:52326937-52326991;chr19:52326992-52342893;chr19:52342894-52347564;chr19:52347565-52356774	chr19:52326936-52326937;chr19:52326991-52326992;chr19:52342893-52342894;chr19:52347564-52347565;chr19:52356774-52356775		0.00	4.76	0.00	NA	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	18.18	0.00	0.00	0.00	4.76	0.00	-4.76	0.118456	0.606219
K	intron_retention		chr19	-	chr19:3538755-3542773				chr19:3538754-3538755;chr19:3542773-3542774		64.81	72.46	79.31	57.14	64.84	47.17	68.42	65.00	60.00	80.00	80.00	61.29	80.00	60.00	62.50	71.43	71.43	61.54	60.55	66.04	40.45	72.22	78.49	79.31	70.77	51.43	80.00	68.18	66.67	63.16	54.55	63.04	53.26	72.46	63.41	69.81	69.59	62.41	-7.19	0.348085	1.000000
N	jcn_only_AD	UBAC1	chr9	-	chr9:138838218-138839643	chr9:138838218-138838789		chr9:138838790-138839643	chr9:138839643-138839644		0.00	0.00	0.00	NA	0.00	NA	0.00	7.50	0.00	1.89	0.00	0.00	0.00	0.00	4.35	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	4.35	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.193042	0.657607
N	alternative_acceptor	ACIN1	chr14	-	chr14:23532308-23532644;chr14:23532275-23532644;chr14:23532284-23532644	chr14:23532247-23532644		chr14:23532247-23532274;chr14:23532275-23532283;chr14:23532284-23532307	chr14:23532246-23532247;chr14:23532274-23532275;chr14:23532283-23532284		1.54	0.00	3.30	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	1.16	2.33	0.00	1.89	0.00	6.90	0.00	0.00	2.00	0.00	0.00	0.00	0.00	2.47	0.00	0.77	0.77	0.078078	0.585944
N	alternative_donor	CA3-AS1,NSMAF	chr8	-	chr8:59498321-59498456	chr8:59498321-59498447		chr8:59498448-59498456	chr8:59498456-59498457		3.12	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	4.35	0.00	0.00	1.59	1.61	NA	0.00	5.00	0.00	1.25	1.12	4.00	2.33	4.17	2.70	4.62	1.37	0.00	1.56	1.56	0.394728	0.658590
N	alternative_donor	SLC11A1	chr2	+	chr2:219251465-219251882	chr2:219251500-219251882		chr2:219251465-219251499	chr2:219251464-219251465		2.55	1.43	4.62	3.57	5.00	NA	0.51	1.88	1.55	1.62	2.36	0.00	1.77	1.13	3.12	2.14	2.42	0.00	0.00	3.37	3.37	4.55	8.25	2.78	10.71	5.38	7.12	9.09	6.78	0.00	6.06	3.83	0.00	7.91	3.48	3.03	0.97	2.96	1.99	0.611599	0.816739
K	intron_retention	SIPA1	chr11	+	chr11:65414537-65414854				chr11:65414536-65414537;chr11:65414854-65414855		5.75	5.34	12.37	NA	10.34	NA	0.00	1.33	0.00	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.00	0.00	5.56	6.38	4.11	0.00	2.50	NA	6.38	7.89	5.26	0.00	4.55	0.00	5.36	7.89	3.51	0.00	8.70	11.76	4.42	5.55	1.13	0.962176	1.000000
K	alternative_acceptor	MGRN1,TCF25	chr16	+	chr16:4714777-4715102	chr16:4714777-4715099		chr16:4715100-4715102	chr16:4715102-4715103		0.00	4.55	5.13	NA	NA	NA	4.35	5.00	7.27	6.98	7.69	10.53	4.44	4.76	6.98	6.52	5.88	0.00	NA	8.70	NA	8.33	4.35	8.00	12.50	3.23	4.35	7.69	NA	8.33	12.50	6.25	NA	3.23	9.68	6.12	4.50	4.88	0.38	0.785180	0.918040
K	intron_retention		chr9	+	chr9:92220090-92220346				chr9:92220089-92220090;chr9:92220346-92220347		5.77	0.00	0.00	5.95	0.00	3.89	0.00	0.00	0.00	1.27	0.00	0.85	NA	1.59	4.11	1.79	NA	0.00	0.00	4.26	5.56	7.28	9.52	6.71	3.23	3.12	0.00	7.04	4.35	5.16	11.01	10.17	20.59	3.45	6.67	4.85	0.00	3.69	3.69	0.996739	1.000000
K	jcn_only_AD	NACA	chr12	-	chr12:57118308-57118609;chr12:57118308-57118745	chr12:57118308-57119046		chr12:57118610-57118745;chr12:57118746-57119046	chr12:57118745-57118746;chr12:57119046-57119047		93.45	88.45	90.88	94.69	88.13	96.23	90.68	82.11	85.83	95.51	92.96	95.40	89.90	83.78	86.94	93.38	90.99	94.85	84.80	84.17	87.23	93.14	86.11	93.18	88.61	82.41	91.22	89.39	88.89	91.53	91.35	88.38	84.52	91.09	85.81	89.86	88.53	83.97	-4.56	0.496872	0.739002
K	intron_retention		chr10	-	chr10:73581765-73583644				chr10:73581764-73581765;chr10:73583644-73583645		20.65	6.25	26.36	12.50	17.14	NA	4.46	8.82	4.95	4.06	8.54	0.39	5.88	8.89	8.33	3.21	6.76	0.81	18.75	16.52	18.75	9.71	13.71	3.80	14.29	26.82	19.81	7.78	19.72	4.90	13.95	12.08	9.52	8.93	15.98	5.49	7.88	15.23	7.35	0.463371	1.000000
K	intron_retention		chr5	-	chr5:139936858-139937012				chr5:139936857-139936858;chr5:139937012-139937013		8.33	5.62	6.15	5.88	4.49	10.00	10.00	9.52	24.14	8.70	10.26	0.00	9.09	13.04	14.29	8.70	12.20	0.00	5.13	6.45	7.14	5.56	3.92	4.55	9.09	17.86	8.33	7.69	4.59	0.00	11.11	10.94	6.00	10.00	3.61	4.55	7.54	10.31	2.77	0.277559	1.000000
K	intron_retention	TNFAIP2	chr14	+	chr14:103589821-103592646				chr14:103589820-103589821;chr14:103592646-103592647		20.00	30.30	21.15	NA	NA	NA	17.78	14.06	22.41	15.53	26.92	14.29	32.00	14.81	28.78	17.61	14.89	8.16	NA	20.00	25.00	19.31	24.56	18.76	55.56	24.32	27.27	35.62	50.00	29.52	14.04	17.14	NA	15.38	23.44	24.71	31.15	17.41	-13.74	0.586975	1.000000
K	intron_retention	PSMB10	chr16	-	chr16:67968852-67969322				chr16:67968851-67968852;chr16:67969322-67969323		5.58	3.75	7.61	4.86	6.95	3.78	0.62	1.06	1.18	2.00	1.77	1.53	1.06	1.46	1.72	2.11	0.97	0.00	3.44	4.71	2.93	6.52	6.84	12.16	3.82	2.63	6.09	8.18	5.98	4.93	4.53	7.26	4.44	8.82	3.45	8.47	3.59	3.58	-0.01	0.853511	1.000000
N	cassette	ATP6V1H	chr8	-	chr8:54682304-54714358;chr8:54682304-54708206	chr8:54682304-54684548;chr8:54684728-54714358,chr8:54684728-54708206		chr8:54684549-54684727			100.00	88.75	99.29	97.74	100.00	96.92	98.77	100.00	97.94	100.00	100.00	100.00	100.00	98.18	99.06	99.05	100.00	100.00	100.00	100.00	100.00	99.04	100.00	100.00	100.00	100.00	100.00	99.36	100.00	99.30	99.60	100.00	100.00	99.67	98.54	98.73	100.00	100.00	0.00	0.400176	0.715834
K	alternative_last_exon	PCTP	chr17	+	chr17:53852221-53853123;chr17:53852221-53900121	chr17:53852221-53853395,chr17:53852221-53852671	chr17:53900122-53900451	chr17:53853396-53854729			96.88	94.64	97.44	92.86	96.97	92.31	98.25	94.12	100.00	94.74	97.78	100.00	96.15	100.00	95.00	100.00	97.62	100.00	93.55	100.00	93.10	100.00	100.00	100.00	95.65	100.00	100.00	100.00	97.06	100.00	100.00	96.97	93.55	96.15	97.50	96.00	95.15	100.00	4.85	0.030406	0.217248
N	alternative_acceptor	BET1L	chr11	-	chr11:201777-205610;chr11:201742-205610;chr11:205470-205610	chr11:201226-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		14.29	25.58	5.13	20.00	16.22	17.86	3.33	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	25.93	0.00	15.38	0.00	14.29	0.00	0.00	12.50	7.89	0.00	0.00	5.00	15.79	0.00	40.00	12.50	7.41	0.00	14.45	9.03	-5.42	0.336041	0.709013
K	jcn_only_AD	CDK11A,RP1-283E3.8	chr1	-	chr1:1637172-1638963	chr1:1637172-1638847		chr1:1638848-1638963	chr1:1638963-1638964		55.17	54.17	46.67	NA	37.50	NA	75.00	63.64	NA	NA	NA	NA	46.15	NA	71.43	NA	NA	NA	NA	34.38	36.36	33.33	44.00	33.33	NA	45.45	45.45	NA	35.71	21.43	43.75	34.04	33.33	33.33	34.38	38.89	50.16	45.45	-4.71	0.729948	0.860317
N	jcn_only_AA	TMEM259	chr19	-	chr19:1011649-1011739;chr19:1011663-1011739	chr19:1011612-1011739		chr19:1011612-1011648;chr19:1011649-1011662	chr19:1011611-1011612;chr19:1011648-1011649		35.37	13.92	27.59	31.25	27.66	NA	17.17	23.88	25.00	30.00	28.32	28.79	23.28	23.61	25.66	17.39	26.98	25.42	27.27	33.85	31.71	28.57	23.91	24.44	26.32	32.08	26.40	22.54	31.40	28.12	55.56	32.00	34.48	24.59	26.19	25.49	24.80	32.97	8.17	0.102782	0.663989
K	intron_retention	STRN4	chr19	-	chr19:47225330-47225498				chr19:47225329-47225330;chr19:47225498-47225499		2.17	0.00	3.51	0.00	3.23	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.78	0.00	10.53	0.00	4.44	0.00	0.00	5.26	2.78	2.22	0.00	0.00	2.22	1.67	0.00	0.00	0.00	0.497687	1.000000
K	alternative_acceptor	RFXANK,SPHK2	chr19	+	chr19:19304943-19307774	chr19:19304943-19307771		chr19:19307772-19307774	chr19:19307774-19307775		18.52	17.24	19.64	38.10	24.19	28.57	20.45	30.95	26.53	26.09	38.64	35.00	24.49	25.86	28.57	29.63	29.03	30.00	14.71	22.45	25.32	25.00	24.39	23.08	20.37	30.95	25.76	33.33	29.63	25.00	20.45	24.19	22.97	18.52	38.24	33.33	20.41	24.16	3.75	0.099118	0.598353
K	intron_retention		chr11	+	chr11:71927970-71929616				chr11:71927969-71927970;chr11:71929616-71929617		20.69	30.00	11.76	21.43	25.51	24.32	24.59	40.00	35.71	13.21	18.64	19.57	27.69	12.50	9.09	18.58	22.08	18.92	24.39	21.88	NA	20.88	24.00	24.64	25.81	37.84	26.67	19.59	23.57	22.39	20.83	29.41	28.21	21.79	22.47	24.22	26.75	21.35	-5.40	0.677335	1.000000
K	cassette	PQBP1	chrX	+	chrX:48759320-48760008	chrX:48759320-48759509;chrX:48759795-48760008		chrX:48759510-48759794			72.73	74.27	75.00	68.15	70.39	68.53	96.97	94.87	100.00	86.96	86.67	83.33	98.61	90.24	96.20	87.18	88.89	85.29	75.29	79.25	86.36	70.59	72.38	72.55	82.16	88.37	80.95	83.33	80.19	85.14	57.97	78.49	68.11	71.60	74.70	73.26	78.72	83.81	5.09	0.797894	0.936947
N	alternative_acceptor	ABCC3	chr17	+	chr17:48755581-48756713;chr17:48755581-48755877;chr17:48755581-48757158;chr17:48755581-48757145	chr17:48755581-48756716		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		5.41	7.41	3.31	NA	19.23	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	4.35	6.67	0.00	5.00	0.00	11.11	19.35	19.09	0.00	3.92	0.00	8.70	15.22	0.00	3.12	15.52	3.23	0.00	5.41	5.41	0.281606	0.709013
N	jcn_only_AD	SDCCAG8	chr1	+	chr1:243542166-243579003	chr1:243543277-243579003		chr1:243542166-243543276	chr1:243542165-243542166		0.00	0.00	6.00	NA	10.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	11.76	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_first_exon	MALAT1	chr11	+	chr11:65272491-65273856	chr11:65273134-65273856	chr11:65271990-65272490	chr11:65272678-65273133			46.55	30.09	37.83	73.08	78.57	84.91	38.46	22.99	35.00	36.36	33.33	33.33	44.00	47.69	36.33	32.35	29.27	31.58	30.77	45.28	43.02	37.50	39.44	35.90	43.43	48.60	35.98	46.97	34.48	71.72	52.78	29.89	41.67	34.36	46.60	48.55	40.06	47.12	7.05	0.272261	0.482310
N	alternative_acceptor	C18orf8	chr18	+	chr18:21110262-21110536;chr18:21110262-21110474;chr18:21110262-21110363	chr18:21110262-21110350		chr18:21110351-21110363;chr18:21110364-21110474;chr18:21110475-21110536	chr18:21110363-21110364;chr18:21110474-21110475;chr18:21110536-21110537		95.83	95.08	95.24	93.55	92.31	92.73	86.67	95.65	90.00	83.33	81.25	93.33	83.33	100.00	84.21	85.71	100.00	100.00	92.50	100.00	90.00	91.67	96.77	88.46	95.00	89.80	97.06	93.75	90.00	93.10	95.95	96.77	93.22	100.00	92.31	93.02	92.86	95.89	3.03	0.064428	0.584083
N	cassette	NCOR2	chr12	-	chr12:124810917-124816864;chr12:124810917-124815390	chr12:124810917-124812092;chr12:124812180-124815390,chr12:124812180-124816864		chr12:124812093-124812179			84.38	86.67	78.95	50.00	65.91	NA	79.17	90.00	81.25	60.00	61.36	67.65	75.44	82.61	76.47	68.89	68.47	71.43	76.92	100.00	91.67	73.81	76.92	77.55	73.33	82.86	81.25	72.97	77.91	70.00	90.91	86.67	81.25	80.39	83.64	70.89	78.05	87.19	9.14	0.017993	0.373030
K	intron_retention		chr9	-	chr9:33255307-33255862				chr9:33255306-33255307;chr9:33255862-33255863		1.05	0.39	9.52	0.56	0.62	0.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	3.33	1.77	1.02	1.80	1.02	0.94	0.00	0.00	0.00	0.00	0.54	2.83	2.97	3.07	1.20	0.99	1.77	0.58	0.53	-0.06	0.888342	1.000000
K	intron_retention	TNK2	chr3	-	chr3:195610181-195611682				chr3:195610180-195610181;chr3:195611682-195611683		1.82	0.00	0.00	NA	NA	NA	0.00	1.61	0.00	NA	0.00	NA	9.09	1.33	6.90	NA	0.00	NA	NA	3.23	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	5.26	0.00	1.47	1.47	0.946515	1.000000
K	cassette	STARD3NL	chr7	+	chr7:38254707-38256788	chr7:38254707-38256625;chr7:38256680-38256788		chr7:38256626-38256679			90.70	100.00	100.00	100.00	100.00	92.31	92.86	98.55	97.30	96.63	90.59	95.89	93.06	95.24	96.43	96.05	92.59	98.39	93.33	98.04	92.86	96.83	98.48	100.00	NA	94.94	93.75	95.16	95.38	100.00	97.92	96.05	89.47	97.73	96.25	98.33	93.06	96.58	3.52	0.336936	0.709176
N	alternative_acceptor	KIAA0196	chr8	-	chr8:126044637-126049478;chr8:126048463-126049478	chr8:126044824-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		5.56	2.33	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.70	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	1.82	NA	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.821837	0.939608
K	cassette	MKNK1	chr1	-	chr1:47024473-47027149	chr1:47024473-47025905;chr1:47025950-47027149		chr1:47025906-47025949			52.21	50.00	43.66	NA	33.33	NA	65.89	60.00	59.38	61.11	66.44	63.33	63.92	65.22	55.56	69.05	65.92	69.23	NA	55.84	61.11	53.12	52.43	60.00	64.29	64.00	52.08	48.00	54.17	61.11	51.35	52.63	NA	56.45	57.27	46.94	64.11	57.92	-6.19	0.534989	0.809056
N	cassette	SRP54	chr14	+	chr14:35488281-35497293	chr14:35488281-35492115;chr14:35492287-35497293		chr14:35492116-35492286			100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.60	100.00	100.00	97.67	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	98.72	100.00	97.22	97.75	100.00	100.00	100.00	100.00	100.00	97.06	100.00	86.79	86.57	100.00	100.00	94.81	94.49	100.00	98.30	-1.70	0.148578	0.709176
K	intron_retention		chr22	-	chr22:50724717-50725539				chr22:50724716-50724717;chr22:50725539-50725540		1.75	9.26	2.35	NA	NA	NA	0.55	0.00	0.00	0.00	0.45	0.00	0.00	0.00	1.04	0.00	0.00	0.00	7.14	0.00	0.00	0.00	2.56	0.00	6.38	0.00	4.40	0.00	0.00	NA	0.00	2.02	0.00	1.75	3.90	0.00	3.46	0.00	-3.46	0.291833	1.000000
N	jcn_only_AD	COLGALT1	chr19	+	chr19:17691050-17691507;chr19:17691429-17691507	chr19:17690419-17691507		chr19:17690419-17691049;chr19:17691050-17691428	chr19:17690418-17690419;chr19:17691049-17691050		96.25	100.00	96.99	NA	100.00	NA	98.20	95.74	100.00	98.26	98.37	95.31	97.91	100.00	97.30	94.40	96.30	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	97.33	97.62	100.00	100.00	92.31	93.75	100.00	96.10	97.37	100.00	100.00	98.12	-1.88	0.197471	0.657607
K	jcn_only_AA	EHBP1L1	chr11	+	chr11:65352006-65359484	chr11:65352006-65352429					94.26	82.84	93.31	81.08	90.11	64.71	100.00	96.38	96.48	100.00	97.47	96.43	97.86	97.00	95.08	98.28	100.00	100.00	82.35	94.57	88.14	96.97	96.90	96.55	65.15	95.91	93.47	100.00	93.98	89.86	94.23	92.42	82.91	100.00	92.71	95.51	82.88	95.24	12.36	0.105266	0.663989
N	jcn_only_AA	SLC35C2	chr20	-	chr20:44980825-44983520	chr20:44980866-44983520		chr20:44980825-44980865	chr20:44980824-44980825		100.00	NA	100.00	NA	100.00	NA	100.00	94.81	95.75	100.00	100.00	100.00	100.00	96.95	94.44	100.00	100.00	80.00	NA	100.00	92.00	NA	100.00	100.00	100.00	96.72	93.18	100.00	100.00	100.00	92.86	92.68	100.00	100.00	100.00	93.94	100.00	96.84	-3.16	0.043029	0.663989
N	jcn_only_AD	NDUFS3	chr11	+	chr11:47593296-47602076;chr11:47600891-47602076	chr11:47600887-47602076					100.00	92.71	88.64	100.00	96.92	100.00	100.00	100.00	100.00	100.00	100.00	95.65	98.90	92.31	96.00	100.00	100.00	100.00	90.38	88.00	98.59	90.91	100.00	86.67	100.00	100.00	92.31	100.00	96.00	100.00	86.96	83.33	94.83	91.67	100.00	84.38	96.87	96.16	-0.71	0.614654	0.809875
N	alternative_donor	TM4SF19	chr3	-	chr3:196050869-196051145;chr3:196050869-196051311	chr3:196050869-196051141		chr3:196051142-196051145;chr3:196051146-196051311	chr3:196051145-196051146;chr3:196051311-196051312		90.91	100.00	NA	83.72	92.00	85.71	91.72	92.50	88.46	85.84	87.89	86.63	93.33	NA	NA	85.98	86.84	81.58	87.50	83.33	87.88	86.32	90.91	84.78	85.71	76.47	NA	87.91	89.47	87.88	92.59	80.00	85.11	85.84	85.94	89.83	89.61	90.91	1.30	0.412479	0.675004
N	jcn_only_AA	MKL2,RNF40	chr16	+	chr16:30783512-30785258;chr16:30783512-30785634	chr16:30783512-30785135		chr16:30785136-30785258;chr16:30785259-30785634	chr16:30785258-30785259;chr16:30785634-30785635		3.23	0.00	0.00	0.00	7.69	NA	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.512766	0.760908
N	jcn_only_AA	KDM1A	chr1	+	chr1:23408860-23409671	chr1:23408860-23408942		chr1:23408943-23409671	chr1:23409671-23409672		0.00	0.00	0.00	0.00	1.75	0.00	10.71	NA	0.00	6.25	0.00	0.00	0.00	0.00	11.54	3.45	0.00	0.00	0.00	0.00	0.00	3.23	0.00	7.14	0.00	0.00	4.35	0.00	5.13	2.70	5.26	3.64	0.00	8.33	0.00	2.63	0.00	0.00	0.00	0.732778	0.881383
K	intron_retention	CHCHD1	chr10	+	chr10:75541958-75542080				chr10:75541957-75541958;chr10:75542080-75542081		0.00	2.46	4.65	2.44	1.69	0.00	1.06	0.00	1.54	1.32	0.81	0.00	0.74	4.08	0.00	1.14	0.00	0.00	1.34	1.69	0.76	6.25	2.63	0.00	0.00	3.12	3.08	0.00	2.61	2.00	6.67	6.56	1.99	1.82	0.00	4.35	1.20	2.41	1.21	0.568792	1.000000
K	alternative_donor	CCDC88C,HAUS4	chr14	-	chr14:23424386-23426132;chr14:23424386-23426124	chr14:23424386-23425954		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		17.65	10.53	20.83	NA	NA	NA	11.48	15.79	18.92	5.56	7.32	4.55	8.16	13.04	11.43	13.33	11.43	NA	NA	13.33	20.00	NA	11.76	NA	18.18	17.65	26.32	NA	7.14	NA	NA	13.33	NA	NA	0.00	NA	11.00	15.79	4.79	0.219451	0.595046
K	cassette	CXXC1	chr18	-	chr18:47813229-47813956	chr18:47813229-47813792;chr18:47813879-47813956		chr18:47813793-47813878			0.00	5.56	4.26	NA	NA	NA	3.12	0.00	2.94	0.00	3.45	NA	0.00	0.00	2.78	0.00	0.00	NA	NA	7.14	5.00	0.00	0.00	NA	6.67	0.00	5.13	0.00	0.00	NA	0.00	5.00	0.00	7.69	5.00	5.56	3.12	0.00	-3.12	0.330622	0.709176
K	intron_retention	KIAA0930	chr22	-	chr22:45593098-45593670				chr22:45593097-45593098;chr22:45593670-45593671		5.26	2.26	1.35	1.37	1.15	0.00	0.59	0.00	0.00	1.36	0.89	0.00	1.03	1.55	0.00	1.35	1.27	0.00	1.60	1.16	1.09	2.86	1.35	1.75	5.05	1.79	1.56	1.79	1.49	0.00	3.51	3.67	3.12	3.02	2.77	1.37	1.93	1.67	-0.26	0.661981	1.000000
K	alternative_acceptor	MCTP1	chr5	-	chr5:94040909-94044216	chr5:94043273-94044216		chr5:94040909-94043272	chr5:94040908-94040909		93.33	100.00	95.83	92.59	86.96	91.43	76.47	74.19	76.00	76.74	79.31	80.85	76.92	67.74	82.35	68.97	74.07	73.08	92.31	100.00	85.71	94.59	92.59	92.00	100.00	88.37	82.00	76.19	75.86	70.97	94.44	100.00	100.00	90.24	97.30	94.00	96.16	90.85	-5.31	0.523244	0.807865
K	cassette	SH3BP2	chr4	+	chr4:2829402-2833297	chr4:2829402-2831219;chr4:2831875-2833297		chr4:2831220-2831874			97.01	100.00	96.30	97.87	97.10	96.15	95.07	98.08	98.08	97.44	96.67	96.92	94.19	95.51	97.47	98.27	98.45	100.00	75.51	95.24	87.32	96.55	95.79	94.44	100.00	98.36	96.43	98.04	97.00	97.59	92.31	90.48	89.74	93.24	96.10	99.06	94.63	96.26	1.63	0.379576	0.709410
K	jcn_only_AA	STYXL1	chr7	-	chr7:75659843-75677129	chr7:75659846-75677129		chr7:75659843-75659845	chr7:75659842-75659843		35.29	30.00	39.47	NA	23.53	NA	35.71	40.00	47.83	36.36	61.11	36.36	38.24	46.43	37.50	34.78	46.15	53.85	43.75	32.35	35.00	35.00	31.43	17.65	NA	37.14	29.41	36.36	39.29	18.75	35.29	21.74	NA	21.43	25.00	25.00	36.98	36.22	-0.76	0.821403	0.928036
K	intron_retention	UNC13D	chr17	-	chr17:73827430-73829046				chr17:73827429-73827430;chr17:73829046-73829047		13.95	7.14	10.26	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.93	4.84	0.00	4.26	0.00	0.00	11.11	5.26	13.33	0.00	0.00	7.55	8.75	7.50	6.25	3.12	5.71	0.00	7.24	7.24	0.397646	1.000000
N	alternative_acceptor	SYVN1	chr11	-	chr11:64896187-64897200;chr11:64896263-64897200	chr11:64896309-64897200		chr11:64896187-64896262;chr11:64896263-64896308	chr11:64896186-64896187;chr11:64896262-64896263		4.35	0.00	3.45	NA	0.00	NA	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	0.00	4.55	8.70	NA	0.00	5.88	NA	6.67	0.00	0.00	5.41	0.00	7.14	5.00	3.45	0.00	0.00	0.00	0.175975	0.660713
K	cassette	CISD1	chr10	+	chr10:60037083-60047320	chr10:60037083-60042658;chr10:60042843-60047320		chr10:60042659-60042842			3.70	0.00	0.00	0.00	0.00	0.00	0.00	33.33	4.17	0.00	0.00	0.00	0.00	42.25	2.33	0.00	0.00	4.00	0.00	12.00	0.00	0.00	0.00	0.00	0.00	20.00	0.00	0.00	0.00	2.44	6.45	0.00	0.00	0.00	0.00	0.00	0.00	16.00	16.00	0.026199	0.412736
N	alternative_acceptor		chr21	+	chr21:45810909-45811161;chr21:45810909-45811315	chr21:45810909-45811154		chr21:45811155-45811161;chr21:45811162-45811315	chr21:45811161-45811162;chr21:45811315-45811316		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	86.67	NA	100.00	NA	NA	NA	NA	NA	NA	100.00	95.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	intron_retention		chr22	-	chr22:41980063-41980284				chr22:41980062-41980063;chr22:41980284-41980285		0.00	5.88	16.67	NA	9.09	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	9.52	0.00	4.35	NA	16.67	7.14	6.25	NA	NA	NA	NA	11.76	20.00	NA	0.00	NA	NA	3.85	5.88	10.00	NA	NA	5.88	0.00	-5.88	0.890417	1.000000
K	intron_retention	ZNF598	chr16	-	chr16:2048587-2048702				chr16:2048586-2048587;chr16:2048702-2048703		9.09	0.00	12.50	16.67	17.39	12.00	0.00	0.00	5.00	0.00	3.85	0.00	0.00	13.33	7.14	4.26	8.82	0.00	10.00	18.75	26.92	17.24	14.81	11.76	0.00	20.00	20.00	5.56	16.00	9.09	19.23	19.44	20.00	4.55	8.00	6.52	0.00	16.04	16.04	0.273538	1.000000
N	jcn_only_AA	MFSD11	chr17	+	chr17:74772624-74777122;chr17:74772624-74774269;chr17:74772624-74774301	chr17:74772624-74774282		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		0.00	8.11	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	CTC-429P9.4,SMIM7	chr19	-	chr19:16758073-16770205;chr19:16758073-16770769	chr19:16758073-16764845;chr19:16764937-16770769,chr19:16764937-16770205		chr19:16764846-16764936			78.95	71.67	75.44	85.71	90.57	90.00	88.12	90.38	84.42	88.52	91.86	86.67	87.88	89.58	88.31	92.78	94.32	100.00	80.00	75.76	78.18	90.32	90.00	90.91	68.00	87.88	88.89	89.80	88.66	86.96	84.38	80.49	80.43	91.11	90.16	89.13	80.22	86.13	5.91	0.247148	0.709176
N	jcn_only_AD	INPPL1	chr11	+	chr11:71936211-71939233	chr11:71936585-71939233		chr11:71936211-71936584	chr11:71936210-71936211		0.00	0.00	0.00	NA	NA	NA	5.41	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	3.45	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention		chr19	-	chr19:50060507-50062153				chr19:50060506-50060507;chr19:50062153-50062154		0.90	2.50	1.11	5.56	1.39	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.85	1.45	0.00	1.61	0.00	0.00	3.97	1.10	0.00	0.00	2.00	2.19	2.50	2.24	4.35	3.85	9.09	0.82	0.88	0.06	0.888119	1.000000
K	intron_retention	MED16	chr19	-	chr19:868500-868862				chr19:868499-868500;chr19:868862-868863		3.45	20.29	0.00	0.00	27.45	11.54	0.00	11.76	5.26	5.56	4.35	NA	9.68	0.00	3.33	0.00	25.00	NA	16.28	0.00	0.00	15.38	38.71	16.67	32.86	0.00	3.70	12.50	30.00	4.35	12.00	9.09	25.00	25.00	30.77	25.93	18.29	1.73	-16.56	0.101545	1.000000
N	alternative_acceptor	ATRIP,TREX1	chr3	+	chr3:48507709-48508176;chr3:48507709-48508138;chr3:48507709-48508028;chr3:48507709-48508463	chr3:48507709-48508382		chr3:48508029-48508138;chr3:48508139-48508176;chr3:48508177-48508382;chr3:48508383-48508463	chr3:48508138-48508139;chr3:48508176-48508177;chr3:48508382-48508383;chr3:48508463-48508464		0.00	2.94	8.33	6.25	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.71	0.00	0.00	0.00	0.00	0.00	4.76	0.00	NA	2.22	0.00	0.00	0.00	0.00	8.33	3.23	7.14	0.00	3.85	0.00	-3.85	0.055265	0.570243
K	intron_retention		chr5	-	chr5:176317943-176318037				chr5:176317942-176317943;chr5:176318037-176318038		2.47	0.00	2.63	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	7.89	0.00	0.00	0.00	2.78	0.00	6.35	0.00	0.00	0.00	0.00	5.26	5.00	1.41	0.00	0.00	0.00	0.839975	1.000000
N	coord_cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4407261-4409296	chr16:4407261-4407968;chr16:4408105-4408367;chr16:4408485-4409296		chr16:4407969-4408104;chr16:4408368-4408484			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_acceptor	COL23A1	chr5	-	chr5:177684569-177686721	chr5:177684584-177686721		chr5:177684569-177684583	chr5:177684568-177684569		0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.94	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.25	NA	0.00	0.00	0.00	NA	0.00	0.00	4.17	3.70	0.00	0.00	0.00	0.00	0.373901	0.709013
N	alternative_donor	AGTRAP	chr1	+	chr1:11809674-11810133;chr1:11808647-11810133	chr1:11808668-11810133		chr1:11808647-11808667;chr1:11808668-11809673	chr1:11808646-11808647;chr1:11808667-11808668		59.41	48.28	63.92	72.00	65.00	50.00	68.42	61.86	70.68	65.22	57.14	77.78	52.00	62.50	59.09	58.33	60.71	71.43	73.33	64.79	59.18	70.00	57.69	65.62	67.86	64.71	66.67	62.07	63.64	66.07	64.00	67.39	61.54	61.90	65.00	62.67	64.70	63.25	-1.45	0.822665	0.942979
K	alternative_donor	CD37	chr19	+	chr19:49838833-49838970	chr19:49838867-49838970		chr19:49838833-49838866	chr19:49838832-49838833		83.53	90.32	84.38	100.00	92.98	NA	91.46	93.42	91.11	88.04	88.97	89.77	89.02	87.73	88.00	90.67	90.65	92.73	95.65	86.67	90.48	90.91	90.98	86.15	65.62	92.56	84.85	95.71	90.62	94.94	91.11	93.18	92.31	94.20	86.84	87.50	90.89	89.42	-1.47	0.719477	0.885082
K	intron_retention		chr11	+	chr11:1008136-1009099				chr11:1008135-1008136;chr11:1009099-1009100		6.15	4.94	7.89	0.00	1.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.96	0.00	0.00	0.00	1.38	0.00	2.05	1.85	0.00	2.86	2.87	0.00	3.42	2.50	0.00	0.00	1.56	5.26	2.00	6.98	3.89	7.69	3.25	5.66	2.73	1.93	-0.81	0.889503	1.000000
K	alternative_acceptor	HDAC10	chr22	-	chr22:50687598-50687756	chr22:50687628-50687756		chr22:50687598-50687627	chr22:50687597-50687598		4.17	0.00	12.50	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	7.69	0.00	0.00	0.00	NA	7.69	0.00	NA	0.00	0.00	0.00	0.00	4.35	8.33	5.26	0.00	NA	4.35	NA	0.00	0.00	0.00	0.00	2.08	2.08	0.208532	0.670323
N	jcn_only_AA	CFAP36	chr2	+	chr2:55764722-55771160;chr2:55764722-55771073	chr2:55764722-55771099		chr2:55771074-55771099;chr2:55771100-55771160	chr2:55771099-55771100;chr2:55771160-55771161		2.78	0.00	0.00	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.60	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.688328	0.863511
K	alternative_acceptor	NCOR2	chr12	-	chr12:124817011-124817675	chr12:124817014-124817675		chr12:124817011-124817013	chr12:124817010-124817011		67.74	64.29	65.00	54.55	66.67	NA	70.00	62.50	50.00	63.93	75.64	66.67	74.42	70.00	70.59	69.35	77.57	71.43	NA	65.52	NA	78.57	65.33	62.50	58.82	66.67	63.64	66.67	65.15	68.75	77.78	63.64	NA	63.64	70.00	62.07	67.15	67.20	0.06	0.725300	0.897400
N	cassette	RASSF4	chr10	+	chr10:45486518-45488716	chr10:45486518-45487352;chr10:45487451-45488716		chr10:45487353-45487450			97.39	100.00	97.29	100.00	100.00	NA	100.00	98.82	98.93	98.62	100.00	97.03	96.69	100.00	97.94	94.90	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.60	96.63	100.00	97.91	100.00	97.75	89.47	91.11	95.38	93.71	100.00	100.00	0.00	0.386768	0.709410
N	jcn_only_AA	ADRBK1	chr11	+	chr11:67047372-67047968;chr11:67047372-67048202;chr11:67047372-67047965	chr11:67047372-67053526		chr11:67047966-67047968;chr11:67047969-67048202;chr11:67048203-67053526	chr11:67047968-67047969;chr11:67048202-67048203;chr11:67053526-67053527		10.89	21.78	4.27	NA	45.95	NA	3.51	0.00	6.14	0.00	1.91	0.00	5.59	1.59	3.23	0.00	1.65	0.00	43.40	3.23	38.10	16.67	10.23	4.17	28.12	5.45	8.11	20.00	10.77	NA	0.00	4.55	47.54	5.56	3.90	5.41	24.95	2.41	-22.54	0.035172	0.663989
K	intron_retention	TYMP	chr22	-	chr22:50968161-50968332				chr22:50968160-50968161;chr22:50968332-50968333		33.47	33.78	42.77	53.45	45.83	42.22	48.86	44.27	50.00	61.59	53.23	54.97	39.05	50.89	55.27	57.71	59.15	58.53	31.94	33.91	39.46	49.55	49.70	49.06	50.00	33.93	41.19	48.71	49.06	47.65	32.26	39.07	30.86	50.00	31.54	47.18	36.41	33.92	-2.49	0.995659	1.000000
N	alternative_donor	SORBS3	chr8	+	chr8:22415706-22418847	chr8:22418544-22418847		chr8:22415706-22418543	chr8:22415705-22415706		0.00	20.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	1.49	0.00	1.00	0.00	14.29	0.00	NA	5.88	3.57	4.35	9.09	0.00	NA	0.00	2.08	NA	NA	0.00	10.00	3.12	3.03	4.26	9.54	0.00	-9.54	0.034541	0.349791
K	cassette	SREK1IP1	chr5	-	chr5:64050190-64064331	chr5:64050190-64060871;chr5:64060949-64064331		chr5:64060872-64060948			5.88	2.54	7.84	4.44	3.66	3.61	2.70	6.67	7.32	0.00	4.44	4.17	5.13	3.23	6.06	3.57	2.78	0.00	4.30	3.70	2.53	5.56	4.35	0.00	2.00	3.12	1.69	8.00	5.71	2.13	0.00	4.00	3.51	2.56	2.86	4.26	3.10	3.46	0.36	0.718554	0.899657
K	cassette	CMTM3	chr16	+	chr16:66642368-66643785	chr16:66642368-66643337;chr16:66643434-66643785		chr16:66643338-66643433			97.56	100.00	89.09	NA	94.59	NA	96.05	98.53	93.75	94.68	96.51	96.43	97.99	96.55	100.00	97.37	97.40	95.65	NA	92.59	100.00	94.74	94.94	95.00	NA	95.45	90.62	94.59	94.52	100.00	93.75	96.00	100.00	95.35	97.01	94.55	99.00	96.00	-3.00	0.072466	0.634271
K	jcn_only_AA	ADAM8	chr10	-	chr10:135084569-135084703	chr10:135084575-135084703		chr10:135084569-135084574	chr10:135084568-135084569		94.70	100.00	97.04	100.00	100.00	NA	100.00	97.09	97.22	100.00	100.00	96.30	96.60	98.81	100.00	100.00	98.29	100.00	100.00	97.06	100.00	91.43	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	96.58	100.00	100.00	96.61	95.12	100.00	97.95	-2.05	0.988809	0.997790
K	intron_retention		chr17	-	chr17:73824168-73824867				chr17:73824167-73824168;chr17:73824867-73824868		3.23	6.25	9.28	0.00	7.69	0.00	3.45	0.00	0.00	NA	0.00	NA	2.04	1.61	0.00	0.00	0.00	NA	0.00	2.50	3.61	0.00	0.00	NA	0.00	2.25	6.17	0.00	0.00	NA	2.08	5.88	3.51	0.00	9.38	4.55	2.75	2.17	-0.58	0.320456	1.000000
K	jcn_only_AD	SIKE1	chr1	-	chr1:115319081-115321762	chr1:115319081-115321552					10.53	0.00	0.00	NA	NA	NA	0.00	0.00	7.41	NA	0.00	NA	4.76	0.00	6.82	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	8.00	NA	NA	NA	NA	0.00	8.00	0.00	0.00	7.14	16.67	0.00	0.00	0.00	0.319969	0.657607
N	jcn_only_AA	NCAPH2	chr22	+	chr22:50961596-50961696;chr22:50961596-50961693;chr22:50961596-50961663	chr22:50961596-50961679		chr22:50961664-50961679;chr22:50961680-50961693;chr22:50961694-50961696	chr22:50961679-50961680;chr22:50961693-50961694;chr22:50961696-50961697		3.85	5.43	7.69	0.00	3.45	3.26	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.00	13.79	4.44	6.67	7.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	1.75	0.00	0.00	0.00	0.88	4.71	3.83	0.273613	0.663989
K	jcn_only_AA	HPS1	chr10	-	chr10:100195530-100202880	chr10:100202715-100202880		chr10:100195530-100202714	chr10:100195529-100195530		0.00	0.00	5.36	NA	18.18	NA	19.09	11.86	12.77	32.26	21.77	20.34	12.61	5.17	5.97	14.29	11.11	17.91	0.00	4.00	25.00	5.13	6.67	5.88	0.00	2.86	4.55	5.71	10.98	8.33	5.71	1.54	0.00	5.68	3.26	3.45	0.00	4.58	4.58	0.929235	0.977496
N	jcn_only_AD	NME3	chr16	-	chr16:1820768-1820881;chr16:1820768-1820885	chr16:1820768-1820889		chr16:1820882-1820885;chr16:1820886-1820889	chr16:1820885-1820886;chr16:1820889-1820890		5.88	16.37	9.09	8.11	10.14	7.81	7.14	0.00	10.94	12.50	10.00	5.26	11.86	10.00	11.39	5.41	4.35	NA	11.21	0.00	11.36	0.00	9.62	12.50	5.98	NA	14.63	0.00	9.26	0.00	NA	2.94	12.93	10.00	11.54	8.70	11.54	2.94	-8.60	0.058088	0.542509
K	alternative_last_exon	HOMEZ	chr14	-	chr14:23754238-23755121;chr14:23746397-23755121	chr14:23754821-23755121	chr14:23741631-23746396	chr14:23754501-23754820			8.33	0.00	5.26	NA	8.33	NA	0.00	0.00	4.35	0.00	0.00	NA	5.56	5.00	4.35	12.50	8.70	NA	0.00	0.00	14.29	NA	5.00	NA	16.67	0.00	0.00	NA	7.14	NA	10.00	0.00	NA	7.69	0.00	0.00	0.00	2.50	2.50	0.885850	0.938850
N	cassette	SPNS1	chr16	+	chr16:28990793-28993676;chr16:28992937-28993676	chr16:28990793-28993221,chr16:28992937-28993221;chr16:28993378-28993676		chr16:28993222-28993377		chr16:28990726-28990792;chr16:28993677-28993866	86.79	75.61	77.78	70.45	64.65	62.96	97.44	94.74	96.61	94.59	96.06	96.83	97.96	97.14	95.89	91.74	94.57	94.23	73.91	88.37	90.74	77.33	70.95	84.44	73.44	100.00	88.00	83.13	78.45	86.27	84.13	81.97	64.29	79.82	78.85	78.18	74.76	91.56	16.80	0.110541	0.708559
N	alternative_acceptor	EIF4A2	chr3	+	chr3:186505054-186505283;chr3:186505054-186505301	chr3:186505054-186505267		chr3:186505268-186505283;chr3:186505284-186505301	chr3:186505283-186505284;chr3:186505301-186505302		2.04	0.00	2.63	0.00	3.12	NA	0.81	1.45	0.72	4.55	1.79	0.00	2.44	1.85	1.61	3.33	5.17	0.00	0.00	2.94	2.33	6.59	3.67	6.45	0.00	3.33	1.47	4.88	4.35	3.12	3.28	2.40	0.00	4.72	5.17	3.25	0.00	2.49	2.49	0.004125	0.401280
N	alternative_acceptor	TMEM120A	chr7	-	chr7:75616702-75616855	chr7:75616747-75616855		chr7:75616702-75616746	chr7:75616701-75616702		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	90.91	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	87.50	92.86	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	0.00	0.916110	0.975923
K	intron_retention	PTBP1	chr19	+	chr19:804940-805012				chr19:804939-804940;chr19:805012-805013		2.44	6.25	3.12	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.38	NA	2.08	0.00	1.35	0.00	0.00	2.27	0.00	0.00	0.00	0.00	7.41	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.669441	1.000000
K	cassette	PXN-AS1	chr12	+	chr12:120647738-120650177	chr12:120647738-120648732;chr12:120648910-120650177		chr12:120648733-120648909			100.00	100.00	98.51	100.00	90.91	100.00	93.10	100.00	100.00	100.00	100.00	NA	76.00	NA	89.47	93.33	88.89	NA	88.89	100.00	96.36	88.24	95.00	NA	100.00	100.00	95.83	100.00	92.11	NA	100.00	100.00	90.91	100.00	100.00	100.00	92.00	100.00	8.00	0.065668	0.621473
N	jcn_only_AA	PRELID1	chr5	+	chr5:176733178-176733385;chr5:176733178-176733363;chr5:176733178-176733372;chr5:176733178-176733422	chr5:176733178-176733455		chr5:176733364-176733372;chr5:176733373-176733385;chr5:176733386-176733422;chr5:176733423-176733455	chr5:176733372-176733373;chr5:176733385-176733386;chr5:176733422-176733423;chr5:176733455-176733456		1.95	3.05	1.73	3.61	3.17	2.77	4.09	3.31	2.83	0.00	0.00	0.00	3.11	0.00	2.93	3.16	3.38	4.23	5.72	4.25	6.43	0.00	5.56	4.58	2.19	0.00	2.38	5.00	3.75	4.91	4.35	3.92	7.01	2.65	2.21	3.06	3.60	2.63	-0.97	0.118442	0.663989
K	intron_retention		chr11	-	chr11:67207911-67208595				chr11:67207910-67207911;chr11:67208595-67208596		5.03	4.13	6.08	0.00	4.62	0.00	0.74	1.68	0.77	0.00	0.60	0.00	1.37	1.94	1.67	1.27	1.24	0.00	1.56	4.20	3.11	2.08	2.26	2.56	4.17	4.84	6.37	3.33	3.31	2.17	4.73	5.88	2.56	3.95	5.11	4.55	2.06	4.46	2.40	0.413954	1.000000
K	intron_retention	SAT2	chr17	-	chr17:7530733-7530870				chr17:7530732-7530733;chr17:7530870-7530871		11.69	9.20	23.08	5.26	5.00	0.00	2.70	3.95	0.00	9.09	0.00	0.00	7.14	4.49	7.32	0.00	3.12	0.00	9.68	16.42	11.11	9.09	11.94	11.76	19.23	19.18	17.54	12.20	9.09	7.27	26.42	22.03	17.24	15.38	11.76	17.07	9.44	14.05	4.62	0.923678	1.000000
N	alternative_acceptor	RANBP3	chr19	-	chr19:5913225-5917804;chr19:5916359-5917804	chr19:5917665-5917804		chr19:5913225-5916358;chr19:5916359-5917664	chr19:5913224-5913225;chr19:5916358-5916359		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	91.67	100.00	100.00	NA	100.00	92.31	100.00	NA	100.00	NA	89.19	100.00	100.00	NA	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.964661	0.991031
K	jcn_only_AA	PLXNB2	chr22	-	chr22:50722643-50723001	chr22:50722674-50723001		chr22:50722643-50722673	chr22:50722642-50722643		3.33	1.01	2.78	NA	0.00	NA	0.00	5.33	0.81	0.00	0.82	0.00	0.81	2.60	0.00	2.17	0.76	0.00	9.52	3.85	0.00	0.00	5.62	0.00	0.00	3.53	2.74	0.00	0.00	NA	4.00	3.60	0.00	3.23	3.88	4.23	0.41	3.69	3.29	0.281770	0.663989
K	alternative_first_exon	RPL23AP82	chr22	+	chr22:51222450-51223600,chr22:51222293-51223600;chr22:51221723-51223600	chr22:51222501-51223600	chr22:51221548-51221722	chr22:51222290-51222500			0.00	0.00	0.00	NA	0.00	NA	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.363217	0.544826
K	alternative_donor	NCOR2	chr12	-	chr12:124810130-124810736	chr12:124810130-124810725		chr12:124810726-124810736	chr12:124810736-124810737		2.13	2.99	0.00	3.33	1.20	0.00	0.00	6.67	0.00	2.04	1.97	1.25	1.43	0.00	4.17	1.83	0.87	1.20	0.00	3.12	0.00	1.59	1.99	1.79	0.00	2.08	2.27	1.69	1.54	1.41	0.00	0.00	2.78	2.17	1.54	3.03	0.71	2.10	1.39	0.357939	0.650093
K	jcn_only_AD	HSD17B10	chrX	-	chrX:53458543-53458745;chrX:53458543-53458921	chrX:53458543-53458772				chrX:53458211-53458542	13.04	10.88	9.38	9.26	5.93	6.73	7.25	0.00	0.00	0.00	0.00	5.41	12.05	6.25	5.88	3.96	4.40	5.56	7.95	15.38	0.00	3.92	5.88	7.32	7.53	NA	7.89	8.11	2.60	4.41	0.00	10.53	7.48	4.26	8.45	5.26	7.74	6.25	-1.49	0.589158	0.795500
K	alternative_acceptor	PSMA3	chr14	+	chr14:58724717-58727665;chr14:58724717-58727686	chr14:58724717-58727676		chr14:58727666-58727676;chr14:58727677-58727686	chr14:58727676-58727677;chr14:58727686-58727687		0.00	0.00	5.41	0.00	2.38	0.00	2.78	0.00	0.00	3.16	0.00	0.00	0.00	1.67	3.33	0.00	0.00	1.67	0.00	5.66	0.00	0.00	1.67	3.12	NA	5.56	5.56	1.54	0.00	0.00	3.57	3.70	3.85	0.00	1.96	2.63	0.00	2.62	2.62	0.318584	0.709013
N	alternative_donor	NDUFS5	chr1	+	chr1:39492701-39494394;chr1:39492071-39494394	chr1:39492075-39494394		chr1:39492071-39492074;chr1:39492075-39492700	chr1:39492070-39492071;chr1:39492074-39492075		28.57	38.55	34.78	33.33	32.93	35.48	14.22	14.29	13.10	12.77	12.71	12.73	36.05	33.87	29.03	39.43	31.36	33.91	30.25	35.59	28.49	38.55	29.45	32.39	25.42	30.77	33.87	34.18	38.69	38.64	43.48	30.77	33.33	33.80	31.65	35.05	31.79	32.32	0.53	0.790949	0.924933
K	intron_retention	KDM1A	chr1	+	chr1:23408067-23408712				chr1:23408066-23408067;chr1:23408712-23408713		15.79	0.00	10.34	0.00	0.00	0.00	8.70	10.00	0.00	0.00	3.03	0.00	8.82	NA	4.76	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	6.25	4.35	0.00	2.86	6.25	2.13	0.00	9.09	9.09	0.845784	1.000000
N	alternative_acceptor	SLC36A1	chr5	+	chr5:154191201-154211053;chr5:154191201-154196831	chr5:154191201-154193446		chr5:154193447-154196831;chr5:154196832-154211053	chr5:154196831-154196832;chr5:154211053-154211054		100.00	NA	100.00	NA	90.00	NA	95.45	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	90.91	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	92.31	100.00	100.00	100.00	93.88	100.00	6.12	0.077234	0.585944
K	jcn_only_AD	TXNDC17	chr17	+	chr17:6544548-6545072;chr17:6544421-6545072	chr17:6544473-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		10.10	16.40	19.27	17.57	12.43	13.40	11.76	11.11	10.47	16.22	20.97	23.08	9.32	7.69	20.00	14.29	23.81	12.12	10.53	8.64	13.27	15.25	11.90	12.20	9.26	15.25	13.79	23.81	5.00	15.38	15.66	17.59	9.29	22.95	12.24	11.69	9.93	10.61	0.68	0.863010	0.930693
N	jcn_only_AA		chr7	+	chr7:4825084-4825197	chr7:4825084-4825152		chr7:4825153-4825197	chr7:4825197-4825198		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	NA	93.55	100.00	100.00	100.00	91.67	100.00	94.59	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	97.30	100.00	100.00	100.00	0.00	0.176733	0.663989
K	intron_retention	KDM2B	chr12	-	chr12:121867967-121868144				chr12:121867966-121867967;chr12:121868144-121868145		100.00	100.00	100.00	75.00	97.56	NA	97.50	95.00	88.89	100.00	92.41	NA	95.16	88.89	97.50	91.49	89.01	NA	100.00	92.86	94.12	92.86	97.73	100.00	100.00	93.10	100.00	91.67	92.45	92.86	100.00	100.00	100.00	96.23	98.57	100.00	100.00	94.05	-5.95	0.233549	1.000000
K	jcn_only_AD	CORO7	chr16	-	chr16:4455569-4457562	chr16:4455569-4457501		chr16:4457502-4457562	chr16:4457562-4457563		93.48	83.33	92.86	NA	100.00	NA	100.00	98.85	100.00	100.00	98.95	100.00	98.95	98.86	100.00	96.43	99.12	100.00	NA	90.24	NA	95.45	95.56	100.00	100.00	92.86	93.94	100.00	97.22	100.00	90.00	95.83	NA	92.11	97.83	96.00	99.47	93.17	-6.30	0.746909	0.868378
N	jcn_only_AD		chr19	-	chr19:18502936-18506885;chr19:18502936-18508262	chr19:18502936-18506994		chr19:18506886-18506994;chr19:18506995-18508262	chr19:18506994-18506995;chr19:18508262-18508263		98.80	97.17	99.29	100.00	97.37	NA	99.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	97.24	NA	94.20	97.33	100.00	100.00	97.58	100.00	100.00	100.00	98.90	100.00	100.00	100.00	95.35	96.58	100.00	100.00	99.05	100.00	99.62	99.40	-0.22	0.908827	0.956488
N	alternative_donor	ARPC2	chr2	+	chr2:219081978-219090642;chr2:219082268-219090642	chr2:219085422-219090642		chr2:219081978-219082267;chr2:219082268-219085421	chr2:219081977-219081978;chr2:219082267-219082268		7.26	3.08	8.96	4.55	3.28	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	5.42	1.41	5.65	4.44	9.21	9.09	3.90	4.44	0.85	0.66	1.18	5.32	7.35	3.70	10.29	5.53	8.50	3.39	4.61	1.22	0.869825	0.968125
N	alternative_acceptor	CECR1	chr22	-	chr22:17663652-17669228;chr22:17663631-17669228	chr22:17666825-17669228		chr22:17663631-17663651;chr22:17663652-17666824	chr22:17663630-17663631;chr22:17663651-17663652		2.04	10.53	0.00	NA	10.00	NA	0.31	0.48	0.00	0.00	0.39	0.00	0.39	0.68	0.00	0.00	0.50	0.00	20.00	1.49	NA	0.00	1.23	0.00	5.88	1.06	0.00	0.00	1.59	0.00	6.25	0.00	NA	0.00	0.70	0.41	5.88	1.27	-4.61	0.217684	0.671511
N	alternative_acceptor	ARHGEF10L,TRMT13	chr1	+	chr1:17965185-17966696;chr1:17965185-17966326	chr1:17965185-17965732		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		9.94	20.00	5.45	5.00	3.45	7.69	2.08	1.49	2.22	1.33	1.96	1.27	1.52	2.44	3.28	2.76	0.77	1.67	0.00	5.62	4.55	5.77	4.49	6.86	NA	11.05	6.90	8.16	3.08	8.00	2.86	4.00	0.00	7.32	5.75	7.45	1.52	4.24	2.72	0.847019	0.946163
K	cassette	ARRB1	chr11	-	chr11:74980004-74983938	chr11:74980004-74982744;chr11:74982769-74983938		chr11:74982745-74982768			41.67	41.33	43.64	NA	42.11	NA	39.08	50.00	40.26	27.59	31.17	33.33	43.55	45.16	44.21	21.43	28.89	42.86	35.14	35.29	41.03	NA	37.04	60.00	62.50	NA	41.46	30.00	34.43	42.86	NA	33.33	55.26	41.18	39.13	47.83	42.44	43.41	0.98	0.572300	0.830407
N	jcn_only_AD	QSOX1	chr1	+	chr1:180166026-180166467;chr1:180166012-180166467;chr1:180165735-180166467	chr1:180165930-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		3.27	2.47	3.24	0.00	8.70	0.00	0.00	0.00	1.75	0.00	0.00	2.86	0.00	2.48	1.49	10.00	5.17	0.00	0.00	3.60	3.30	4.00	0.00	0.00	0.00	4.88	2.26	0.00	0.00	0.00	3.15	3.57	0.00	6.38	3.85	3.03	0.00	3.21	3.21	0.012226	0.279867
N	jcn_only_AA	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2420049;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2419918		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		25.93	10.47	7.14	6.48	8.88	10.27	5.48	NA	5.00	11.39	6.67	0.00	5.19	14.29	8.57	6.53	0.00	15.79	8.36	12.90	6.82	9.24	9.74	8.33	14.71	0.00	0.00	5.50	3.79	5.43	19.44	8.70	10.29	9.20	6.60	10.98	9.32	14.29	4.96	0.285219	0.663989
N	jcn_only_AA	AURKAIP1	chr1	-	chr1:1309738-1310084;chr1:1309826-1310084;chr1:1309742-1310084	chr1:1309971-1310084		chr1:1309738-1309741;chr1:1309742-1309825;chr1:1309826-1309970	chr1:1309737-1309738;chr1:1309741-1309742;chr1:1309825-1309826		0.00	0.00	0.00	0.00	0.91	2.60	9.09	2.78	6.00	6.12	7.35	7.14	1.80	0.00	1.82	1.03	1.37	0.00	0.00	0.00	1.49	5.56	1.03	0.00	2.40	0.00	0.00	0.00	2.44	6.38	0.00	0.00	0.00	0.00	3.08	2.38	0.90	0.00	-0.90	0.290657	0.663989
N	alternative_donor	MNDA	chr1	+	chr1:158817680-158818979;chr1:158817876-158818979	chr1:158817707-158818979		chr1:158817680-158817706;chr1:158817707-158817875	chr1:158817679-158817680;chr1:158817706-158817707		92.43	96.31	93.55	97.06	100.00	91.12	94.02	90.03	93.79	89.47	90.57	90.37	91.61	91.38	91.84	92.54	90.91	88.61	89.92	88.95	86.52	89.19	92.31	93.08	92.02	93.30	90.91	95.10	91.78	91.00	91.46	90.53	87.68	94.03	88.10	93.07	91.81	91.42	-0.40	0.644969	0.839864
K	intron_retention	DDAH2	chr6	-	chr6:31696302-31696422				chr6:31696301-31696302;chr6:31696422-31696423		4.50	5.88	12.00	0.00	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	2.59	3.28	0.00	7.41	0.00	3.08	1.22	4.76	2.78	0.80	4.35	3.08	8.47	3.66	5.48	4.55	2.22	2.88	1.90	-0.97	0.416201	1.000000
N	alternative_donor	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677171-197677806;chr3:197677093-197677806	chr3:197677631-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		12.78	7.89	10.71	11.57	7.43	7.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.40	21.05	8.40	22.06	12.25	21.05	0.62	9.80	6.19	2.88	1.65	2.34	32.43	23.36	9.04	16.67	8.53	13.41	4.25	11.29	7.03	0.183109	0.563271
K	intron_retention	AP5Z1	chr7	+	chr7:4821386-4822946				chr7:4821385-4821386;chr7:4822946-4822947		24.14	30.00	14.71	NA	8.33	NA	3.12	0.00	4.00	0.00	7.14	9.52	2.27	3.33	2.50	3.57	5.71	0.00	NA	15.15	NA	22.22	6.25	23.81	9.52	6.45	18.52	12.50	12.50	5.56	15.79	24.14	NA	25.00	18.52	27.27	6.32	10.80	4.48	0.632433	1.000000
K	jcn_only_AD	ACADVL	chr17	+	chr17:7127178-7127286	chr17:7127195-7127286		chr17:7127178-7127194	chr17:7127177-7127178		96.06	95.72	93.21	99.35	99.39	100.00	97.04	96.67	94.26	96.90	95.37	96.20	95.82	94.59	96.00	96.25	95.64	94.74	90.71	92.09	92.69	98.37	97.49	97.99	99.09	95.45	96.88	97.04	98.05	97.46	90.06	90.30	95.78	97.66	97.45	98.68	95.80	95.02	-0.78	0.340746	0.657607
K	intron_retention	SHARPIN	chr8	-	chr8:145154973-145157953				chr8:145154972-145154973;chr8:145157953-145157954		2.27	7.27	3.64	10.00	3.45	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	2.63	0.00	0.00	3.45	0.00	2.17	5.56	4.88	8.33	0.00	0.00	2.63	0.00	2.00	4.55	9.38	2.27	4.35	8.33	2.70	0.00	2.75	0.00	-2.75	0.864722	1.000000
K	jcn_only_AA	CUX1	chr7	+	chr7:101838884-101839913;chr7:101838884-101916636	chr7:101838884-101840219					0.00	6.82	1.41	NA	0.00	NA	5.56	5.88	13.04	8.89	7.69	7.55	1.39	6.06	10.34	13.51	6.78	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.69	0.00	-0.69	0.867534	0.948413
K	intron_retention	MYL5	chr4	+	chr4:672555-672746				chr4:672554-672555;chr4:672746-672747		7.14	0.00	3.45	0.00	0.00	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	4.35	0.00	9.09	14.29	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	2.27	16.67	14.29	5.00	0.00	2.17	2.17	0.804920	1.000000
K	intron_retention		chr9	-	chr9:139756949-139757357				chr9:139756948-139756949;chr9:139757357-139757358		36.36	38.30	47.50	30.00	33.33	42.51	15.38	14.29	13.04	5.41	12.90	0.00	4.55	7.14	20.00	7.84	2.86	10.00	40.87	48.15	39.78	44.12	40.32	60.61	31.58	53.85	37.84	20.00	24.14	43.64	57.41	66.07	50.55	38.46	46.43	43.48	34.94	42.25	7.31	0.840751	1.000000
K	intron_retention		chr19	-	chr19:7688176-7688616				chr19:7688175-7688176;chr19:7688616-7688617		5.56	0.00	7.69	NA	4.35	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	2.44	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	SLC35C2	chr20	-	chr20:44979164-44979399				chr20:44979163-44979164;chr20:44979399-44979400		18.18	8.82	16.67	17.65	16.13	12.00	4.35	7.14	9.68	0.00	7.69	9.52	4.44	7.52	8.21	0.00	6.67	9.09	12.50	17.14	12.77	NA	11.11	18.18	15.09	15.07	18.87	23.81	16.67	24.32	27.78	22.92	16.13	33.33	20.00	26.83	10.66	16.11	5.45	0.693495	1.000000
N	alternative_acceptor	TRIM28	chr19	+	chr19:59060144-59060252;chr19:59060144-59060206;chr19:59060144-59060231	chr19:59060144-59060228		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		91.30	94.12	82.22	90.91	75.00	NA	95.24	100.00	89.47	92.31	88.00	97.56	92.59	87.50	93.33	90.00	100.00	91.53	92.31	77.78	86.96	88.89	86.49	85.00	94.44	80.00	84.85	94.12	87.50	83.33	78.26	81.63	69.23	95.00	82.76	90.48	93.36	83.75	-9.61	0.497772	0.791230
K	cassette	ARL8A	chr1	-	chr1:202104349-202104834	chr1:202104349-202104586;chr1:202104655-202104834		chr1:202104587-202104654			92.59	100.00	94.21	94.29	94.55	90.00	96.88	98.26	97.69	96.32	97.30	96.94	100.00	96.88	97.78	95.88	97.78	91.94	95.00	93.44	98.04	97.10	94.39	92.59	85.71	97.31	95.24	95.56	95.54	95.83	95.61	95.41	96.15	96.15	94.69	95.56	96.52	96.25	-0.27	0.980824	0.995216
K	intron_retention	C12orf57	chr12	+	chr12:7053337-7053638				chr12:7053336-7053337;chr12:7053638-7053639		24.14	8.57	17.50	33.33	12.50	22.73	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	0.00	10.00	8.70	13.64	10.34	38.10	17.65	28.57	2.50	7.69	9.43	0.00	5.00	21.43	25.00	21.15	10.71	33.33	20.83	20.83	5.54	18.89	13.36	0.305265	1.000000
N	jcn_only_AA	MCOLN1	chr19	+	chr19:7594599-7595320;chr19:7594599-7595255	chr19:7594599-7595171		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		90.14	92.11	89.19	88.89	90.70	83.33	91.80	96.77	95.24	78.38	70.37	74.24	83.19	92.86	93.75	83.51	71.64	69.35	79.31	90.38	82.93	85.19	87.01	100.00	94.74	95.35	95.00	88.57	85.56	84.44	86.05	90.62	81.01	88.89	87.27	91.49	87.50	91.62	4.12	0.156250	0.663989
K	jcn_only_AD	NME2	chr17	+	chr17:49243859-49244187	chr17:49243925-49244187		chr17:49243859-49243924	chr17:49243858-49243859		0.00	0.00	1.56	0.00	0.00	0.75	0.72	1.10	0.96	0.76	1.42	0.95	38.99	40.30	30.09	40.04	39.33	40.61	0.00	0.00	1.48	1.30	0.88	0.00	0.00	0.00	0.00	0.88	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.55	0.936255	0.963889
K	intron_retention	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007764				chr22:51007510-51007511;chr22:51007764-51007765		30.00	15.56	35.00	40.00	21.43	33.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28.57	25.00	29.79	NA	30.00	NA	20.55	31.71	30.30	40.00	NA	NA	20.69	25.00	23.08	NA	NA	NA	21.81	27.50	5.69	0.694575	1.000000
N	alternative_acceptor	PLEKHM2	chr1	+	chr1:16057753-16058393;chr1:16057753-16058444	chr1:16057753-16058383		chr1:16058384-16058393;chr1:16058394-16058444	chr1:16058393-16058394;chr1:16058444-16058445		89.02	85.71	80.33	83.78	82.35	88.89	96.92	93.06	92.59	95.83	94.12	98.08	91.38	94.05	94.34	92.13	93.15	94.44	82.76	75.34	86.36	81.33	82.05	82.56	100.00	90.91	89.06	90.48	87.10	92.19	72.97	72.48	73.47	80.87	82.61	84.03	88.54	89.97	1.42	0.661782	0.877732
K	intron_retention	SPNS1	chr16	+	chr16:28986714-28986812				chr16:28986713-28986714;chr16:28986812-28986813	chr16:28986509-28986713;chr16:28986813-28986878	0.00	0.00	4.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	5.00	0.00	0.00	0.00	2.02	0.00	0.00	2.78	0.00	0.00	0.00	0.00	2.63	4.55	0.00	1.11	2.25	1.49	0.00	0.00	0.00	0.819949	1.000000
N	alternative_donor	PINK1	chr1	+	chr1:20975083-20975487	chr1:20975126-20975487		chr1:20975083-20975125	chr1:20975082-20975083		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.74	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	coord_cassette	COASY	chr17	+	chr17:40716596-40717244	chr17:40716596-40716726;chr17:40716917-40717000;chr17:40717066-40717244		chr17:40716727-40716916;chr17:40717001-40717065			80.00	72.73	65.85	57.89	50.00	54.29	97.67	90.00	88.57	100.00	100.00	100.00	100.00	85.71	88.00	100.00	94.29	100.00	64.86	82.76	78.26	70.59	60.98	77.27	69.70	75.61	67.35	80.77	86.49	92.73	71.43	61.54	71.05	67.86	75.00	75.47	71.89	81.38	9.49	0.823821	0.930773
K	jcn_only_AA	TMEM208	chr16	+	chr16:67261128-67261738	chr16:67261128-67261621		chr16:67261622-67261738	chr16:67261738-67261739		0.00	0.00	1.54	0.00	0.00	0.00	1.23	0.00	0.00	1.49	0.00	0.00	0.00	0.00	1.61	1.11	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.82	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AA	LTBR	chr12	+	chr12:6493851-6494202	chr12:6493851-6494187		chr12:6494188-6494202	chr12:6494202-6494203		89.89	88.46	89.92	NA	95.00	NA	91.92	91.25	93.16	85.71	88.35	96.30	91.34	92.41	93.75	90.68	91.57	89.36	100.00	87.84	93.33	89.47	94.25	91.89	100.00	90.20	94.12	86.49	88.24	84.62	95.12	89.01	91.67	76.09	85.71	86.96	91.80	90.72	-1.07	0.252005	0.663989
K	alternative_acceptor	RIC8A	chr11	+	chr11:213419-214205;chr11:213419-214229	chr11:213419-214287		chr11:214206-214229;chr11:214230-214287	chr11:214229-214230;chr11:214287-214288		0.00	3.70	5.00	8.33	0.00	0.00	6.00	7.69	7.89	12.50	2.08	0.00	6.38	8.11	0.00	9.76	0.00	0.00	0.00	8.93	9.09	13.51	6.78	0.00	0.00	6.38	11.29	9.09	3.39	9.68	7.27	11.59	8.33	7.50	6.12	6.90	4.85	7.48	2.63	0.258398	0.709013
N	alternative_acceptor	CORO7,CORO7-PAM16	chr16	-	chr16:4415050-4415491	chr16:4415062-4415491		chr16:4415050-4415061	chr16:4415049-4415050		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	CDC42SE1	chr1	-	chr1:151027603-151029131;chr1:151026798-151031954;chr1:151027603-151031954	chr1:151027603-151028152,chr1:151026798-151028152;chr1:151028470-151029131,chr1:151028470-151031954		chr1:151028153-151028469			95.83	100.00	95.91	NA	95.45	NA	100.00	100.00	99.41	99.11	98.00	99.40	99.11	100.00	98.90	99.59	100.00	98.33	NA	94.38	88.89	100.00	97.50	96.15	100.00	98.11	98.26	100.00	100.00	100.00	94.12	90.32	NA	96.30	100.00	96.08	100.00	96.97	-3.03	0.055775	0.590788
N	alternative_acceptor	MAP3K11	chr11	-	chr11:65375288-65375392;chr11:65375235-65375392;chr11:65375165-65375392	chr11:65375169-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		7.27	7.55	5.56	NA	0.00	NA	0.00	4.65	5.26	5.13	0.00	0.00	3.85	3.57	0.00	2.56	4.35	6.67	0.00	6.67	7.41	0.00	4.65	0.00	0.00	6.52	5.08	0.00	0.00	8.33	6.25	10.29	10.53	8.00	7.32	6.25	1.93	6.38	4.46	0.306226	0.709013
K	jcn_only_AA	THAP3	chr1	+	chr1:6690414-6692450	chr1:6690414-6692429		chr1:6692430-6692450	chr1:6692450-6692451		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	SLC11A1	chr2	+	chr2:219249990-219251357	chr2:219249990-219250134;chr2:219250209-219251357		chr2:219250135-219250208			5.54	3.70	8.17	7.14	5.26	NA	2.73	5.14	7.69	7.69	5.77	0.00	3.04	5.28	6.52	5.53	8.42	0.00	4.17	7.65	3.95	5.45	10.59	3.03	0.00	7.72	7.03	10.26	6.96	8.00	7.41	8.53	7.14	11.86	5.79	8.00	3.37	6.47	3.10	0.024637	0.412617
K	intron_retention		chr14	+	chr14:24572100-24572368				chr14:24572099-24572100;chr14:24572368-24572369		1.45	0.00	6.67	NA	3.23	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	1.22	0.00	5.26	NA	0.00	2.24	2.13	0.00	6.25	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.72	0.72	0.246869	1.000000
N	alternative_donor	JOSD2	chr19	-	chr19:51013706-51014331;chr19:51013706-51014373	chr19:51013706-51014382		chr19:51014332-51014373;chr19:51014374-51014382	chr19:51014373-51014374;chr19:51014382-51014383		0.00	0.00	0.00	NA	0.00	0.00	0.00	10.53	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	4.00	0.00	3.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.581886	0.799662
K	intron_retention		chr20	-	chr20:2641012-2641102				chr20:2641011-2641012;chr20:2641102-2641103		6.67	16.48	11.76	8.33	6.67	5.56	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	1.92	0.00	0.00	17.07	18.75	4.88	15.15	18.84	13.51	21.33	4.17	17.78	7.32	9.46	5.26	10.53	20.45	13.33	15.38	14.29	14.55	14.91	5.42	-9.49	0.617934	1.000000
K	intron_retention	VPS28	chr8	-	chr8:145650384-145651065				chr8:145650383-145650384;chr8:145651065-145651066		37.50	41.54	45.95	46.67	52.17	42.86	37.93	41.67	33.33	43.75	48.00	50.00	32.26	NA	NA	35.29	52.38	NA	27.50	38.89	50.00	60.00	42.42	66.67	34.78	50.00	61.76	61.90	39.53	44.83	35.29	45.45	30.23	47.06	40.00	47.62	33.52	38.89	5.37	0.421342	1.000000
K	intron_retention	AC113189.5	chr17	-	chr17:7485479-7487235				chr17:7485478-7485479;chr17:7487235-7487236		100.00	100.00	90.91	97.22	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	88.89	100.00	100.00	93.62	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	0.00	0.374379	1.000000
N	alternative_acceptor	KLC1	chr14	+	chr14:104159972-104164368;chr14:104159972-104166991;chr14:104159972-104160068	chr14:104159972-104162455		chr14:104160069-104162455;chr14:104162456-104164368;chr14:104164369-104166991	chr14:104162455-104162456;chr14:104164368-104164369;chr14:104166991-104166992		25.71	26.23	23.08	30.43	25.00	28.57	NA	30.77	16.67	17.65	22.22	NA	21.74	18.75	20.00	20.00	19.05	16.67	26.32	21.74	16.67	23.81	27.91	23.81	26.19	18.75	17.65	28.57	26.47	15.79	21.74	20.59	20.51	22.22	25.00	22.92	26.19	21.74	-4.45	0.586173	0.843374
K	intron_retention	RABL6	chr9	+	chr9:139726314-139726716				chr9:139726313-139726314;chr9:139726716-139726717		0.00	0.00	5.77	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	15.38	0.00	0.00	0.00	0.00	0.00	5.88	0.00	5.56	0.00	2.56	0.00	0.00	0.00	0.00	0.493365	1.000000
K	jcn_only_AD	CNOT3	chr19	+	chr19:54656737-54657451	chr19:54656820-54657451		chr19:54656737-54656819	chr19:54656736-54656737		13.95	0.00	0.00	7.89	11.63	4.35	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	7.50	4.08	10.00	5.56	4.17	11.36	6.67	6.98	0.00	0.00	0.00	8.51	3.23	8.51	6.90	0.00	2.56	1.25	7.08	5.83	0.445447	0.704340
K	cassette	REV3L	chr6	-	chr6:111628774-111631055	chr6:111628774-111629216;chr6:111629449-111631055		chr6:111629217-111629448			64.10	96.15	59.46	100.00	92.31	100.00	47.06	73.33	NA	66.67	76.92	29.41	35.29	84.62	81.25	75.00	58.33	26.09	100.00	65.52	100.00	69.23	61.11	47.22	100.00	65.52	56.25	84.62	66.67	82.61	70.97	52.50	100.00	60.00	78.57	69.57	98.08	68.25	-29.83	0.503534	0.786576
N	jcn_only_AA	GPNMB	chr7	+	chr7:23300393-23313139;chr7:23300393-23302922;chr7:23300393-23306135	chr7:23300393-23306099					18.16	15.42	20.31	16.92	18.34	7.69	19.38	24.65	22.00	19.34	19.13	18.98	18.73	24.85	23.88	18.88	17.81	19.54	20.25	20.87	19.44	17.48	19.97	18.27	0.00	22.46	24.89	18.76	18.88	15.15	17.96	20.66	15.84	15.73	15.36	16.04	17.29	21.66	4.38	0.092390	0.663989
K	cassette	MAN2B1	chr19	-	chr19:12769159-12772073	chr19:12769159-12769241;chr19:12769322-12772073		chr19:12769242-12769321			95.00	80.28	86.39	94.74	90.20	NA	99.70	100.00	100.00	100.00	100.00	100.00	99.68	98.70	99.30	99.40	99.32	100.00	94.12	92.19	93.33	95.52	92.03	95.16	91.07	96.81	91.89	98.70	96.49	100.00	93.88	82.35	65.62	88.12	82.61	93.33	92.59	95.91	3.31	0.219602	0.709176
N	alternative_donor	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6919905-6920228;chr17:6920005-6920228;chr17:6920001-6920228	chr17:6919845-6920228		chr17:6919845-6919904;chr17:6919905-6920000;chr17:6920001-6920004	chr17:6919844-6919845;chr17:6919904-6919905;chr17:6920000-6920001		8.77	23.15	13.86	16.98	13.95	9.76	8.82	3.33	7.94	3.57	6.06	3.85	6.25	3.23	6.67	6.25	6.67	4.55	21.93	9.80	15.38	15.62	20.29	17.14	13.75	9.09	10.31	8.00	12.77	7.84	15.25	18.87	21.10	15.56	15.79	12.90	17.43	8.93	-8.50	0.060029	0.421463
K	intron_retention	PTOV1	chr19	+	chr19:50360388-50360949				chr19:50360387-50360388;chr19:50360949-50360950		18.42	22.92	22.73	25.00	21.13	4.17	0.00	0.00	8.70	0.00	5.56	0.00	4.48	0.00	11.54	2.44	8.11	0.00	14.06	14.29	16.07	22.73	26.23	20.83	18.57	18.52	16.05	12.50	20.00	6.25	32.14	25.42	16.67	28.57	21.28	19.44	15.37	16.36	0.99	0.555867	1.000000
K	jcn_only_AA	MFSD2A,RBM8A	chr1	+	chr1:145508076-145508209	chr1:145508076-145508206		chr1:145508207-145508209	chr1:145508209-145508210		90.28	89.34	93.02	87.20	92.00	91.79	89.02	89.90	89.71	88.62	90.52	89.55	93.81	92.31	88.04	88.67	89.15	90.78	93.33	93.33	91.24	92.57	91.78	90.34	100.00	86.60	93.08	92.86	93.91	89.47	93.19	89.24	95.06	88.95	91.28	92.27	93.57	91.30	-2.27	0.237306	0.663989
K	intron_retention		chr3	+	chr3:49043301-49043496				chr3:49043300-49043301;chr3:49043496-49043497		10.00	8.57	5.56	0.00	10.87	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	7.32	0.00	2.86	0.00	7.81	0.00	17.65	0.00	9.09	5.56	7.55	0.00	3.33	2.44	2.22	3.33	3.45	4.55	4.77	1.67	-3.11	0.570799	1.000000
N	jcn_only_AA	BAX,TPM3P9	chr19	+	chr19:49464172-49464788;chr19:49464172-49464827	chr19:49464172-49464739		chr19:49464740-49464788;chr19:49464789-49464827	chr19:49464788-49464789;chr19:49464827-49464828		16.26	11.16	12.99	22.14	14.52	22.97	10.62	21.05	13.16	7.41	10.34	8.11	12.73	11.61	18.45	11.63	11.63	3.33	12.67	13.42	16.62	16.83	12.66	14.81	7.56	14.63	8.50	14.74	10.53	13.00	15.62	17.86	14.48	20.49	12.50	19.40	11.91	15.12	3.21	0.040042	0.663989
K	jcn_only_AD	CRAT	chr9	-	chr9:131857892-131858348	chr9:131857892-131858276		chr9:131858277-131858348	chr9:131858348-131858349		100.00	100.00	95.83	NA	100.00	NA	96.67	100.00	93.55	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	94.12	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.715831	0.853290
N	cassette	VPS37A	chr8	+	chr8:17137953-17143855	chr8:17137953-17141981;chr8:17142126-17143855		chr8:17141982-17142125			100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.08	97.96	93.02	100.00	100.00	96.97	100.00	95.83	98.11	100.00	100.00	NA	100.00	96.97	96.77	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.67	100.00	98.33	100.00	100.00	100.00	97.96	100.00	100.00	0.00	0.622305	0.862437
K	intron_retention		chr16	+	chr16:67915321-67915399				chr16:67915320-67915321;chr16:67915399-67915400		6.45	0.00	10.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	7.41	0.00	13.33	2.50	10.00	0.00	13.64	6.98	0.00	0.00	0.00	10.00	12.12	NA	0.00	8.57	6.90	0.00	6.93	6.93	0.201867	1.000000
K	intron_retention	COX15	chr10	-	chr10:101474476-101476104				chr10:101474475-101474476;chr10:101476104-101476105		0.00	11.76	30.00	NA	10.00	NA	9.09	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	9.09	NA	NA	6.25	0.00	NA	NA	NA	0.00	0.00	10.53	NA	NA	NA	8.33	9.09	0.00	NA	18.75	27.27	0.00	0.00	0.00	0.858705	1.000000
K	cassette	CPPED1	chr16	-	chr16:12758973-12875041	chr16:12758973-12798480;chr16:12798907-12875041		chr16:12798481-12798906			86.89	80.00	96.30	NA	89.47	NA	93.02	95.60	95.50	89.80	94.57	90.48	98.28	95.61	96.15	92.86	95.40	93.75	93.75	93.33	96.15	76.92	93.94	75.00	69.23	96.49	97.56	100.00	94.29	92.31	88.00	90.00	76.47	95.00	94.29	88.46	86.51	94.47	7.96	0.180844	0.709176
K	intron_retention	CLK3	chr15	+	chr15:74914558-74914834				chr15:74914557-74914558;chr15:74914834-74914835		1.04	0.00	5.49	0.00	2.13	NA	6.90	0.00	0.00	0.00	0.00	0.00	0.00	2.38	3.23	0.00	4.76	0.00	0.00	4.23	2.86	6.98	6.67	3.39	0.00	6.02	4.76	6.25	14.81	4.44	1.25	3.12	5.26	5.36	3.28	2.91	0.00	1.81	1.81	0.977655	1.000000
N	jcn_only_AA	IRF5	chr7	+	chr7:128588176-128588243;chr7:128588176-128588263	chr7:128588176-128588283		chr7:128588244-128588263;chr7:128588264-128588283	chr7:128588263-128588264;chr7:128588283-128588284		0.00	0.00	0.00	0.00	3.85	0.00	5.71	3.36	4.40	3.61	3.95	2.75	3.52	5.22	3.82	3.20	2.46	5.21	0.00	2.38	3.45	2.49	3.03	4.50	0.00	4.79	0.00	3.47	4.06	3.45	4.50	4.65	0.00	3.82	2.22	3.79	0.00	3.93	3.93	0.186302	0.663989
K	intron_retention	EIF4A1	chr17	+	chr17:7481235-7481482				chr17:7481234-7481235;chr17:7481482-7481483		8.30	5.84	11.03	3.61	4.02	2.34	0.58	0.76	1.16	0.58	0.49	0.33	0.74	0.77	1.21	0.63	0.58	0.51	3.51	7.21	4.76	6.13	6.96	5.19	3.63	5.70	6.78	1.82	4.25	2.59	14.99	14.78	6.58	4.84	5.53	4.15	3.57	6.46	2.89	0.609844	1.000000
N	cassette	CIAPIN1	chr16	-	chr16:57464252-57466398;chr16:57464252-57467955	chr16:57464252-57465062;chr16:57465179-57466398,chr16:57465179-57467955		chr16:57465063-57465178			80.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	100.00	96.88	91.67	93.55	100.00	96.67	100.00	100.00	92.86	NA	NA	100.00	89.47	96.67	88.89	NA	100.00	95.24	89.47	96.00	95.24	84.21	87.50	75.00	95.65	89.66	89.66	96.78	100.00	3.22	0.927189	0.982136
K	jcn_only_AD	TRAPPC5	chr19	+	chr19:7745936-7747127;chr19:7745765-7747127	chr19:7745913-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		11.11	15.62	9.68	12.50	10.00	0.00	10.26	16.13	14.29	0.00	6.25	9.52	10.00	5.00	8.33	0.00	6.90	6.67	6.02	6.45	17.86	0.00	4.41	0.00	13.46	14.29	14.29	9.52	6.82	12.90	4.17	0.00	3.39	9.09	17.39	11.11	10.13	8.78	-1.35	0.925256	0.959985
K	alternative_last_exon	PKMYT1	chr16	-	chr16:3022756-3023138	chr16:3023066-3023138	chr16:3022636-3022755	chr16:3022792-3023065			93.33	83.87	NA	NA	90.91	NA	89.66	75.00	NA	100.00	88.00	NA	92.31	75.00	NA	96.00	85.96	NA	92.59	NA	91.67	NA	84.00	NA	90.70	80.00	NA	NA	87.23	NA	NA	NA	88.89	NA	92.31	NA	90.18	77.50	-12.68	0.131228	0.341377
N	jcn_only_AA	CYTH2	chr19	+	chr19:48978207-48981322;chr19:48978207-48980973	chr19:48978207-48981325		chr19:48980974-48981322;chr19:48981323-48981325	chr19:48981322-48981323;chr19:48981325-48981326		48.65	50.00	49.35	50.00	44.68	36.36	59.52	54.12	48.00	55.10	43.48	56.25	51.92	50.68	46.15	52.78	56.60	52.05	50.00	51.61	40.35	61.76	47.37	60.00	40.91	50.62	52.56	46.67	47.92	48.39	39.47	42.86	45.24	52.50	56.10	49.23	50.00	50.65	0.65	0.904636	0.968067
K	jcn_only_AA	LRRC75A-AS1	chr17	+	chr17:16342729-16343424;chr17:16342729-16342841;chr17:16342729-16342973;chr17:16342729-16342894	chr17:16342729-16343498					66.67	84.69	54.29	82.35	82.93	84.44	75.87	42.31	39.62	74.28	74.19	76.04	91.42	70.97	71.30	87.86	88.74	91.97	78.67	43.75	55.84	64.35	72.43	62.14	83.75	54.55	63.38	84.74	82.40	83.89	47.37	52.17	84.42	78.80	83.42	80.52	84.09	50.96	-33.13	0.001133	0.252444
K	cassette	ATG4B	chr2	+	chr2:242594063-242598522;chr2:242594063-242606059	chr2:242594063-242594685;chr2:242594759-242598522,chr2:242594759-242606059		chr2:242594686-242594758			100.00	100.00	96.30	100.00	97.14	NA	100.00	100.00	100.00	100.00	97.14	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	92.98	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.186111	0.709176
K	intron_retention	GLUL	chr1	-	chr1:182354978-182357838				chr1:182354977-182354978;chr1:182357838-182357839		94.33	94.92	96.13	100.00	100.00	NA	95.85	97.01	96.98	98.42	97.79	98.95	96.13	96.13	97.45	95.69	97.88	99.12	96.77	96.71	97.50	100.00	98.47	98.67	96.00	95.06	95.78	99.59	98.33	100.00	94.84	96.47	94.74	97.24	98.86	97.42	95.92	95.59	-0.33	0.361441	1.000000
N	jcn_only_AD	C19orf38	chr19	+	chr19:10961184-10966940	chr19:10961244-10966940		chr19:10961184-10961243	chr19:10961183-10961184		100.00	86.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr8	+	chr8:41467475-41468254				chr8:41467474-41467475;chr8:41468254-41468255		8.54	0.00	8.96	4.76	0.00	NA	4.65	0.00	0.00	0.00	3.57	0.00	4.08	0.00	3.53	1.32	0.00	4.55	0.00	4.62	2.86	6.25	5.26	7.92	NA	5.88	5.68	2.13	2.70	8.62	10.39	8.97	NA	7.89	7.69	13.74	2.04	5.25	3.21	0.882941	1.000000
N	jcn_only_AA	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401382-80402322	chr17:80401503-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		2.25	0.00	0.00	0.00	2.86	0.00	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	2.46	2.22	0.00	0.00	0.00	2.08	6.00	3.03	0.00	0.87	0.00	0.00	0.00	0.448564	0.712502
K	jcn_only_AD	DEDD2,PRR22	chr19	-	chr19:42713993-42719299	chr19:42713993-42719284		chr19:42719285-42719299	chr19:42719299-42719300		89.36	100.00	96.43	NA	100.00	NA	95.00	91.30	100.00	100.00	98.00	NA	93.55	91.30	88.00	85.19	91.30	NA	100.00	100.00	100.00	87.50	94.00	NA	100.00	93.33	100.00	100.00	92.00	NA	86.49	88.89	100.00	92.31	94.87	88.24	100.00	91.30	-8.70	0.023299	0.355547
K	intron_retention	ABCD4	chr14	-	chr14:74756223-74756729				chr14:74756222-74756223;chr14:74756729-74756730		0.00	0.00	12.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.45	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	13.33	NA	0.00	9.52	9.09	NA	5.00	0.00	NA	11.11	0.00	NA	7.69	7.14	0.00	0.00	0.00	0.828110	1.000000
N	jcn_only_AD	MS4A6A	chr11	-	chr11:59949215-59950538;chr11:59949215-59950608;chr11:59949215-59949969;chr11:59949215-59949844;chr11:59949215-59949790	chr11:59949215-59950450		chr11:59949791-59949844;chr11:59949845-59949969;chr11:59949970-59950450;chr11:59950451-59950538;chr11:59950539-59950608	chr11:59949844-59949845;chr11:59949969-59949970;chr11:59950450-59950451;chr11:59950538-59950539;chr11:59950608-59950609		100.00	100.00	100.00	100.00	97.00	94.74	97.00	95.93	100.00	97.35	97.02	97.63	97.15	98.25	100.00	99.07	97.41	98.19	100.00	100.00	NA	96.64	95.77	95.82	100.00	96.04	100.00	97.66	97.44	96.05	100.00	100.00	100.00	98.91	98.27	94.87	100.00	99.12	-0.88	0.533411	0.757311
K	intron_retention		chr19	-	chr19:12786957-12787921				chr19:12786956-12786957;chr19:12787921-12787922		20.00	29.73	22.86	23.53	25.00	17.86	3.23	0.00	6.25	3.85	4.00	0.00	2.50	0.00	4.26	0.00	6.06	0.00	25.00	11.11	11.63	NA	40.00	NA	32.26	17.65	15.38	18.75	19.35	9.52	18.75	33.33	28.95	NA	NA	16.67	26.98	14.38	-12.60	0.423511	1.000000
N	jcn_only_AA	RFWD2	chr1	-	chr1:175916376-175956078	chr1:175916393-175956078		chr1:175916376-175916392	chr1:175916375-175916376		5.77	1.32	0.00	1.64	2.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.38	2.47	0.00	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	1.83	1.37	0.00	0.00	0.00	1.04	1.04	0.231156	0.663989
K	intron_retention	ATP6V0A1	chr17	+	chr17:40665997-40666306				chr17:40665996-40665997;chr17:40666306-40666307		0.00	2.22	2.38	NA	0.00	NA	1.04	2.17	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.33	1.61	NA	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	5.13	NA	0.00	0.00	0.00	2.50	2.67	0.00	0.00	0.00	0.00	0.780747	1.000000
N	alternative_donor	UPP1	chr7	+	chr7:48129016-48129784	chr7:48129385-48129784		chr7:48129016-48129384	chr7:48129015-48129016		0.65	7.14	0.00	1.27	0.00	0.00	0.00	1.39	0.00	0.00	1.52	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	1.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.26	1.15	3.45	1.32	2.63	1.16	0.00	0.97	0.97	0.585809	0.799662
K	alternative_acceptor	MT1E	chr16	+	chr16:56659792-56660791	chr16:56659792-56660377		chr16:56660378-56660791	chr16:56660791-56660792		96.30	100.00	94.17	86.36	NA	97.83	93.33	97.74	97.26	76.19	NA	100.00	98.08	98.10	97.58	95.31	NA	96.30	100.00	95.08	91.18	NA	NA	NA	NA	94.55	92.42	NA	NA	NA	95.41	94.12	100.00	NA	NA	94.87	100.00	95.85	-4.15	0.195885	0.661405
K	alternative_acceptor	RP11-321N4.5,SYNCRIP	chr6	-	chr6:86322639-86324698	chr6:86322642-86324698		chr6:86322639-86322641	chr6:86322638-86322639		73.33	51.16	72.00	72.00	67.86	70.00	76.32	73.33	78.95	72.73	68.89	73.08	76.60	76.47	75.00	73.13	66.67	81.82	62.50	76.92	70.97	72.97	72.50	64.29	69.57	70.00	81.82	68.57	75.68	68.42	75.00	63.16	61.36	63.64	55.88	62.86	66.03	74.16	8.13	0.107943	0.600043
K	intron_retention	AAMP	chr2	-	chr2:219130871-219131165				chr2:219130870-219130871;chr2:219131165-219131166		6.67	6.00	9.52	6.25	2.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	2.04	8.89	7.81	0.00	0.00	7.55	7.25	2.56	5.45	0.00	3.28	6.98	10.71	3.28	6.67	8.33	0.00	2.38	2.38	0.941453	1.000000
N	alternative_acceptor	SCAMP3	chr1	-	chr1:155227126-155227288	chr1:155227178-155227288		chr1:155227126-155227177	chr1:155227125-155227126		100.00	100.00	100.00	NA	100.00	NA	97.37	100.00	97.50	97.22	100.00	96.30	100.00	96.30	100.00	97.30	100.00	100.00	100.00	100.00	96.55	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	0.00	0.913394	0.973850
K	intron_retention	HGS	chr17	+	chr17:79663560-79663636				chr17:79663559-79663560;chr17:79663636-79663637		3.51	0.00	5.05	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	1.89	2.33	2.73	2.27	0.00	0.00	0.00	1.04	1.11	0.00	5.26	3.97	6.67	3.19	3.95	2.96	0.00	1.19	1.19	0.966093	1.000000
K	intron_retention	PSTPIP1	chr15	+	chr15:77324736-77325202				chr15:77324735-77324736;chr15:77325202-77325203		17.86	9.01	20.51	0.00	8.33	0.00	3.51	NA	0.00	0.00	0.00	NA	3.64	NA	0.00	NA	0.00	NA	4.20	21.43	6.41	NA	14.29	NA	12.17	0.00	11.11	NA	21.05	NA	7.69	10.53	6.40	0.00	12.90	0.00	5.30	12.78	7.47	0.626134	1.000000
N	alternative_donor	CHMP5	chr9	+	chr9:33265168-33266007;chr9:33265794-33266007;chr9:33265146-33266007	chr9:33265825-33266007		chr9:33265146-33265167;chr9:33265168-33265793;chr9:33265794-33265824	chr9:33265145-33265146;chr9:33265167-33265168;chr9:33265793-33265794		1.99	0.00	0.41	0.00	0.00	NA	0.00	6.93	1.89	0.00	0.00	5.51	0.00	6.38	4.56	0.75	0.00	7.75	NA	2.08	0.00	1.37	0.00	3.81	NA	4.05	0.50	1.27	0.00	4.76	1.85	0.34	0.00	1.19	0.00	4.60	0.00	3.06	3.06	0.009110	0.212718
N	alternative_donor	GIMAP1-GIMAP5,GIMAP5	chr7	+	chr7:150437592-150437966;chr7:150434797-150437966	chr7:150437727-150437966		chr7:150434797-150437591;chr7:150437592-150437726	chr7:150434796-150434797;chr7:150437591-150437592		13.89	8.51	7.59	NA	NA	NA	1.75	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	2.13	0.00	0.00	10.00	6.56	5.88	6.67	5.56	16.67	6.67	3.55	6.35	2.38	7.14	0.00	3.64	5.19	8.33	12.50	13.33	4.76	7.50	3.59	-3.91	0.564503	0.794230
N	jcn_only_AA	RNH1	chr11	-	chr11:500000-500483;chr11:500015-500483	chr11:499924-500483		chr11:499924-499999;chr11:500000-500014	chr11:499923-499924;chr11:499999-500000		2.17	2.99	0.00	5.50	3.15	2.22	2.73	1.77	1.03	2.16	1.62	2.55	3.81	3.45	3.45	4.59	3.40	1.46	4.29	3.85	4.00	5.03	3.48	2.45	4.92	5.95	5.56	2.73	3.12	4.17	3.57	3.45	4.51	3.48	4.24	3.38	4.05	3.51	-0.54	0.568837	0.796382
K	cassette	STARD10	chr11	-	chr11:72466188-72468811	chr11:72466188-72466745;chr11:72466799-72468811		chr11:72466746-72466798			100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	96.91	100.00	96.55	100.00	100.00	100.00	94.39	100.00	100.00	100.00	100.00	100.00	95.00	97.56	100.00	100.00	100.00	100.00	98.45	100.00	1.55	0.634095	0.867338
N	alternative_donor	SUN2	chr22	-	chr22:39138561-39141688	chr22:39138561-39140969		chr22:39140970-39141688	chr22:39141688-39141689		1.20	0.00	0.75	NA	NA	NA	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.85	0.00	0.00	0.00	4.76	0.00	1.67	0.00	0.00	0.00	0.00	5.00	2.50	NA	0.00	0.00	4.76	0.00	1.50	1.50	0.043339	0.375646
K	alternative_acceptor	PSTPIP1	chr15	+	chr15:77327905-77328151	chr15:77327905-77328142		chr15:77328143-77328151	chr15:77328151-77328152		72.73	62.55	81.58	78.95	81.25	85.37	81.08	NA	NA	70.00	79.41	NA	83.72	NA	83.33	NA	76.00	NA	68.42	61.54	76.74	NA	79.41	NA	73.93	60.00	74.42	NA	100.00	NA	66.67	75.00	66.93	85.00	86.67	81.48	71.18	64.11	-7.07	0.129602	0.623599
N	cassette	PRDX5	chr11	+	chr11:64085859-64088336;chr11:64085859-64088132	chr11:64085859-64087205;chr11:64087341-64088132,chr11:64087341-64088336		chr11:64087206-64087340			81.61	86.90	81.94	85.93	89.08	88.39	89.07	84.62	90.00	92.04	90.60	89.34	91.10	84.62	87.50	88.79	91.10	93.98	87.44	81.67	86.90	91.09	85.02	89.83	90.23	88.89	85.71	88.51	88.76	89.76	87.88	82.63	83.67	82.61	82.80	84.75	88.25	84.62	-3.63	0.083529	0.641134
K	jcn_only_AA	MYL6	chr12	+	chr12:56553407-56553808	chr12:56553407-56553758		chr12:56553759-56553808	chr12:56553808-56553809		25.52	100.00	100.00	28.07	27.49	26.09	21.99	17.22	19.12	20.47	17.07	23.17	21.71	22.96	21.90	29.05	17.87	20.11	50.29	52.94	40.94	39.42	31.86	42.45	34.68	26.64	32.03	33.03	28.89	31.37	54.92	59.14	53.01	29.65	31.00	32.18	42.48	26.08	-16.41	0.349827	0.663989
N	alternative_first_exon		chr19	+	chr19:49468867-49469540	chr19:49469174-49469540	chr19:49468558-49468866	chr19:49469027-49469173			100.00	100.00	90.91	100.00	100.00	100.00	97.22	97.14	90.91	97.37	97.78	96.43	96.43	95.24	NA	96.67	97.30	94.12	100.00	100.00	100.00	96.55	98.04	95.65	100.00	96.15	92.86	96.30	96.77	96.15	100.00	100.00	100.00	75.00	95.45	96.55	100.00	98.57	-1.43	0.464080	0.607399
K	alternative_last_exon	HVCN1	chr12	-	chr12:111065982-111087972	chr12:111087281-111087972	chr12:111065646-111065981	chr12:111086491-111087280			93.75	94.64	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	99.05	NA	100.00	NA	100.00	NA	98.67	100.00	100.00	NA	98.31	NA	100.00	100.00	100.00	100.00	100.00	NA	99.53	100.00	0.47	0.877495	0.935325
K	cassette	VRK2	chr2	+	chr2:58373610-58386483	chr2:58373610-58381888;chr2:58381938-58386483		chr2:58381889-58381937			12.07	0.00	9.26	17.65	14.81	8.33	15.79	12.50	11.11	24.59	24.62	29.31	24.14	10.47	19.05	18.37	29.17	19.70	NA	8.33	10.00	14.81	12.50	13.33	NA	11.90	14.63	19.15	19.44	16.18	4.76	6.31	0.00	14.06	13.56	9.52	7.89	11.19	3.29	0.997286	0.999100
K	alternative_acceptor	YIPF3	chr6	-	chr6:43480837-43481096	chr6:43480939-43481096		chr6:43480837-43480938	chr6:43480836-43480837		96.08	100.00	92.75	100.00	95.83	NA	100.00	100.00	100.00	94.29	95.83	93.33	95.74	94.59	95.12	96.77	97.50	95.24	100.00	95.12	96.43	100.00	91.49	96.43	100.00	96.15	100.00	93.33	97.06	100.00	95.00	96.61	93.75	96.97	93.75	95.83	100.00	95.60	-4.40	0.168100	0.660713
K	intron_retention	AGAP3	chr7	+	chr7:150839722-150840427				chr7:150839721-150839722;chr7:150840427-150840428		8.57	7.64	13.16	6.10	3.76	4.35	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	1.82	0.00	0.00	0.00	3.61	8.33	6.25	7.04	5.35	7.69	4.76	6.52	8.55	0.00	2.73	3.45	9.23	8.26	5.26	3.23	7.58	4.55	4.18	7.42	3.24	0.817120	1.000000
N	jcn_only_AA	AP1G2	chr14	-	chr14:24032512-24032588;chr14:24031803-24032588	chr14:24032492-24032588		chr14:24031803-24032491;chr14:24032492-24032511	chr14:24031802-24031803;chr14:24032491-24032492		24.00	46.15	22.22	NA	40.00	NA	0.00	9.09	4.00	NA	0.00	NA	5.00	7.69	4.76	NA	0.00	NA	53.85	21.43	18.75	NA	17.65	NA	NA	26.47	22.58	NA	29.41	NA	20.00	25.00	36.36	NA	16.67	23.08	36.36	20.71	-15.64	0.415119	0.688158
N	alternative_donor	MALAT1	chr11	+	chr11:65266934-65268382	chr11:65268286-65268382		chr11:65266934-65268285	chr11:65266933-65266934		89.80	91.47	91.58	95.58	89.71	94.71	93.02	96.72	96.49	94.37	92.96	100.00	94.74	94.04	93.03	93.75	96.30	100.00	89.71	86.63	91.22	91.21	93.75	91.50	93.94	92.91	90.45	91.71	93.50	93.24	87.36	88.50	89.25	92.37	91.01	92.24	92.25	91.35	-0.89	0.687650	0.866509
K	cassette	MPP1	chrX	-	chrX:154020561-154033546	chrX:154020561-154028019;chrX:154028169-154033546		chrX:154028020-154028168			0.00	0.00	1.28	NA	0.00	NA	1.35	1.55	1.85	0.00	0.00	0.50	0.67	1.42	0.97	0.00	0.61	1.07	0.00	0.00	0.00	0.00	0.44	0.80	15.38	0.95	0.88	0.00	0.00	0.00	0.00	1.19	0.00	0.71	0.49	0.41	0.34	0.47	0.14	0.413070	0.727434
K	jcn_only_AA	XRCC1	chr19	-	chr19:44056996-44057552	chr19:44057244-44057552		chr19:44056996-44057243	chr19:44056995-44056996		92.86	73.33	83.33	NA	86.67	NA	90.20	100.00	86.96	91.67	94.12	NA	92.00	90.00	96.00	91.30	86.67	NA	NA	94.44	80.00	NA	90.00	NA	70.00	85.71	93.75	100.00	95.45	NA	NA	94.74	NA	80.00	91.67	NA	81.77	92.86	11.09	0.140764	0.663989
K	intron_retention		chr3	-	chr3:127294349-127294591				chr3:127294348-127294349;chr3:127294591-127294592		11.36	3.66	10.87	7.89	7.69	2.22	0.00	1.89	0.00	0.43	1.19	0.00	0.89	0.00	0.00	0.34	0.50	0.00	5.13	9.52	7.69	10.20	8.91	9.88	3.77	6.56	7.02	1.77	4.90	3.31	13.58	13.89	5.41	5.59	4.08	4.83	3.71	8.04	4.32	0.368074	1.000000
K	intron_retention	UFC1	chr1	+	chr1:161127484-161128201				chr1:161127483-161127484;chr1:161128201-161128202		9.52	5.26	21.21	NA	9.52	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	8.70	9.09	13.33	NA	17.65	NA	31.58	20.00	15.38	NA	16.67	NA	7.69	13.33	3.03	7.69	18.18	0.00	6.98	9.30	2.33	0.521754	1.000000
N	cassette	ANXA11	chr10	-	chr10:81932626-81964581;chr10:81932626-81960965;chr10:81932626-81961014;chr10:81932626-81965098	chr10:81932626-81935862;chr10:81935912-81964581,chr10:81935912-81965098,chr10:81935912-81961014,chr10:81935912-81960965		chr10:81935863-81935911			57.14	50.00	51.67	NA	62.75	NA	64.10	54.55	62.11	64.91	68.77	62.60	58.52	57.38	64.13	70.67	65.48	70.11	61.54	56.00	50.00	73.47	67.59	58.62	78.57	54.69	53.19	68.42	77.39	64.00	54.00	50.94	50.00	72.38	68.63	62.79	60.03	55.34	-4.69	0.318726	0.709176
K	intron_retention	LONP1	chr19	-	chr19:5694564-5694771				chr19:5694563-5694564;chr19:5694771-5694772		0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.50	5.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.585694	1.000000
N	cassette	PI4K2A,RP11-548K23.11	chr10	+	chr10:99422726-99426194	chr10:99422726-99424641;chr10:99424742-99426194		chr10:99424642-99424741			94.74	100.00	98.08	NA	NA	NA	98.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.706894	0.894382
K	intron_retention		chr22	+	chr22:50636018-50636251				chr22:50636017-50636018;chr22:50636251-50636252		13.64	9.09	16.00	0.00	12.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	3.08	NA	9.09	12.50	2.94	0.00	9.09	9.09	0.00	0.00	5.88	0.00	4.76	0.00	0.00	7.69	0.00	0.00	9.09	10.00	0.00	0.00	0.00	0.910121	1.000000
N	jcn_only_AA	FAM65A,MAPK8IP3	chr16	+	chr16:67575482-67575555;chr16:67575482-67575604	chr16:67575482-67575539		chr16:67575540-67575555;chr16:67575556-67575604	chr16:67575555-67575556;chr16:67575604-67575605		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	CCDC88A	chr2	-	chr2:55515492-55518811;chr2:55506167-55518811	chr2:55518301-55518811		chr2:55506167-55515491;chr2:55515492-55518300	chr2:55506166-55506167;chr2:55515491-55515492		46.88	27.66	65.22	36.00	35.29	44.44	78.33	66.07	66.67	69.77	73.27	72.00	67.14	58.46	74.55	62.86	79.59	61.29	34.21	59.18	39.62	41.38	52.24	58.33	40.54	59.70	47.83	41.18	46.15	50.00	65.00	54.76	64.00	54.55	60.26	45.83	52.27	59.44	7.17	0.443533	0.707367
K	alternative_acceptor	AC138969.4,STUB1	chr16	+	chr16:731881-732058	chr16:731881-732019		chr16:732020-732058	chr16:732058-732059		100.00	93.41	97.14	93.75	99.01	96.59	98.44	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	96.23	98.25	100.00	96.75	88.89	97.40	92.86	94.59	100.00	95.97	100.00	95.00	100.00	98.21	97.14	94.12	94.00	95.45	100.00	97.92	93.62	96.36	100.00	3.64	0.821839	0.939608
K	intron_retention	SNRPB	chr20	-	chr20:2442440-2443281				chr20:2442439-2442440;chr20:2443281-2443282		43.75	57.79	59.65	49.13	49.83	46.55	50.63	41.67	58.21	40.50	50.00	49.45	55.93	42.50	54.43	50.00	46.56	49.48	61.90	53.33	51.48	59.57	57.46	53.61	46.54	46.30	58.10	45.45	48.46	45.78	53.41	62.77	59.20	54.08	62.71	56.52	56.86	45.02	-11.84	0.082178	1.000000
N	alternative_last_exon	TPM4	chr19	+	chr19:48284440-48284515;chr19:48284440-48287546	chr19:48284440-48284546	chr19:48287547-48287941	chr19:48284547-48284813			98.04	98.33	98.31	95.00	97.56	83.33	96.15	98.31	100.00	94.12	100.00	91.67	100.00	100.00	98.25	91.30	95.24	NA	97.78	100.00	98.84	93.33	96.88	90.91	98.18	98.41	97.22	93.33	96.55	92.86	97.06	97.87	98.15	100.00	100.00	100.00	98.17	98.36	0.19	0.453581	0.606950
N	alternative_acceptor		chr5	+	chr5:96107400-96108971;chr5:96107400-96108343	chr5:96107400-96108494		chr5:96108344-96108494;chr5:96108495-96108971	chr5:96108494-96108495;chr5:96108971-96108972		13.92	NA	20.00	10.00	12.28	16.06	26.67	13.24	NA	NA	NA	20.00	16.67	11.29	NA	14.81	NA	NA	27.27	33.33	13.21	NA	17.02	19.05	NA	18.75	NA	18.92	20.00	13.58	9.62	14.29	7.02	NA	13.73	7.22	21.67	13.58	-8.09	0.664808	0.878422
K	cassette	SNRPD1	chr18	+	chr18:19192405-19203708	chr18:19192405-19202685;chr18:19202763-19203708		chr18:19202686-19202762			100.00	100.00	95.24	100.00	98.90	96.39	100.00	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	100.00	95.77	100.00	96.49	97.59	97.78	98.48	100.00	86.67	97.14	100.00	100.00	100.00	100.00	96.43	96.92	96.72	98.57	98.57	99.34	100.00	0.66	0.749370	0.919681
K	cassette	MPRIP	chr17	+	chr17:17083403-17088136	chr17:17083403-17083920;chr17:17083984-17088136		chr17:17083921-17083983			0.00	9.09	5.41	NA	0.00	NA	3.33	0.00	5.26	7.32	3.03	0.00	0.00	NA	5.26	5.00	5.56	13.04	NA	0.00	4.00	16.67	6.25	5.56	NA	0.00	3.70	5.26	0.00	7.14	NA	0.00	8.33	0.00	0.00	3.23	5.83	0.00	-5.83	0.094771	0.658231
K	intron_retention	COMMD4	chr15	+	chr15:75630762-75630986				chr15:75630761-75630762;chr15:75630986-75630987		6.10	4.00	7.46	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	2.74	2.27	0.00	2.41	3.57	2.63	4.92	7.46	2.78	1.03	0.00	3.64	3.28	2.41	1.96	4.94	0.00	1.21	3.19	1.99	0.620347	1.000000
K	cassette	ACADVL	chr17	+	chr17:7123517-7123922	chr17:7123517-7123782;chr17:7123849-7123922		chr17:7123783-7123848			95.96	92.00	93.44	100.00	96.43	NA	100.00	96.97	100.00	97.71	100.00	97.60	99.23	96.15	97.85	98.53	100.00	98.68	NA	98.04	93.33	93.55	91.25	100.00	100.00	95.24	92.86	100.00	95.06	100.00	100.00	94.12	92.31	92.16	94.19	92.54	99.23	96.56	-2.67	0.866615	0.953900
N	alternative_donor	CTSK	chr1	-	chr1:150779283-150779724;chr1:150779283-150779605	chr1:150779283-150780689		chr1:150779606-150779724;chr1:150779725-150780689	chr1:150779724-150779725;chr1:150780689-150780690		98.88	100.00	98.60	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	97.87	98.82	98.72	100.00	100.00	94.74	100.00	100.00	100.00	94.87	94.52	100.00	96.61	94.92	94.62	100.00	99.44	-0.56	0.144825	0.560769
K	alternative_acceptor	MYL6	chr12	+	chr12:56553407-56553808	chr12:56553407-56553758		chr12:56553759-56553808	chr12:56553808-56553809		82.67	100.00	100.00	82.25	82.60	82.63	83.78	80.02	81.23	80.29	79.12	80.65	83.39	83.05	81.36	84.74	80.45	80.27	91.69	91.79	90.85	84.75	83.07	85.91	86.05	82.84	84.27	85.10	81.64	82.17	92.32	91.72	92.22	78.19	80.43	80.26	88.87	82.94	-5.93	0.256188	0.709013
K	jcn_only_AA	PITRM1	chr10	-	chr10:3185968-3186483;chr10:3185924-3186483	chr10:3185694-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		87.50	83.33	77.78	76.19	92.31	85.71	100.00	100.00	90.48	100.00	100.00	94.44	100.00	93.33	97.37	94.74	92.98	100.00	NA	92.86	95.65	91.84	80.65	95.56	NA	88.89	76.47	93.48	100.00	94.12	88.24	80.56	91.67	91.07	94.74	88.42	95.84	90.88	-4.96	0.680846	0.857722
K	intron_retention	FAM103A1	chr15	+	chr15:83657941-83658632				chr15:83657940-83657941;chr15:83658632-83658633		2.13	0.00	3.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	2.04	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	5.45	2.78	6.25	0.00	0.00	1.20	0.00	1.06	1.06	0.798265	1.000000
K	intron_retention	WIPI2	chr7	+	chr7:5269337-5270465				chr7:5269336-5269337;chr7:5270465-5270466		8.33	10.00	20.45	5.56	10.42	12.12	14.55	13.16	10.42	14.81	13.46	15.00	13.11	13.33	12.96	17.86	16.67	16.67	13.73	14.29	11.32	23.08	10.53	30.00	15.00	14.29	12.50	12.50	20.59	15.38	19.05	8.45	9.52	16.13	13.89	12.20	13.42	13.81	0.39	0.272335	1.000000
K	intron_retention		chr6	+	chr6:36103639-36103795				chr6:36103638-36103639;chr6:36103795-36103796		1.82	0.00	6.12	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	4.92	4.62	1.25	0.00	2.50	2.17	0.00	0.99	0.00	0.00	5.41	0.00	1.10	2.63	0.00	0.00	0.91	0.91	0.483310	1.000000
N	alternative_acceptor		chr14	+	chr14:104159972-104164368;chr14:104159972-104160068;chr14:104159972-104162455	chr14:104159972-104166991		chr14:104160069-104162455;chr14:104162456-104164368;chr14:104164369-104166991	chr14:104162455-104162456;chr14:104164368-104164369;chr14:104166991-104166992		20.00	31.15	17.95	26.09	35.00	32.14	NA	15.38	25.00	11.76	5.56	NA	8.70	12.50	6.67	16.00	9.52	25.00	39.47	21.74	40.00	14.29	18.60	19.05	35.71	31.25	17.65	14.29	17.65	21.05	34.78	32.35	43.59	22.22	16.67	16.67	35.71	20.87	-14.84	0.241479	0.696352
K	coord_cassette	BID	chr22	-	chr22:18222255-18257146	chr22:18222255-18226568;chr22:18226780-18232870;chr22:18232941-18257146		chr22:18226569-18226779;chr22:18232871-18232940			73.91	79.25	69.77	86.57	93.33	85.29	95.00	93.75	95.24	97.11	96.32	96.39	93.26	95.71	90.67	96.18	96.48	96.04	95.00	86.54	86.67	93.33	89.47	93.51	50.00	79.31	73.24	91.34	95.56	92.54	75.00	74.70	75.00	94.02	93.43	92.24	86.25	82.93	-3.33	0.741302	0.870412
N	cassette	ZBTB8OS	chr1	-	chr1:33093146-33116033;chr1:33097481-33116033;chr1:33093146-33099551;chr1:33087550-33116033	chr1:33093146-33099245,chr1:33097481-33099245,chr1:33087550-33099245;chr1:33099329-33099551,chr1:33099329-33116033		chr1:33099246-33099328			100.00	93.33	100.00	88.89	95.38	90.91	96.67	100.00	100.00	92.31	100.00	100.00	92.86	100.00	100.00	95.45	95.00	92.86	98.15	90.91	96.61	94.44	90.24	76.47	95.16	90.91	97.37	100.00	92.00	76.67	94.44	93.33	91.55	91.67	96.97	100.00	94.25	97.22	2.97	0.519193	0.795691
K	intron_retention		chr11	-	chr11:93466288-93466515				chr11:93466287-93466288;chr11:93466515-93466516		23.08	0.00	10.71	7.89	2.00	0.00	0.00	NA	0.00	9.30	5.13	0.00	0.00	NA	4.35	7.89	3.57	4.55	5.26	15.79	3.12	13.04	8.33	13.33	0.00	16.67	8.33	5.88	7.69	3.23	9.38	9.26	4.00	13.73	16.67	6.98	0.00	16.23	16.23	0.015462	1.000000
K	intron_retention	NOP56	chr20	+	chr20:2636159-2636240				chr20:2636158-2636159;chr20:2636240-2636241		4.55	25.00	7.32	0.00	3.85	NA	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	2.04	0.00	5.26	0.00	7.41	5.63	6.56	2.82	NA	0.00	0.00	0.00	0.00	0.00	17.39	2.63	17.65	7.14	5.26	6.45	5.26	0.00	-5.26	0.514858	1.000000
N	cassette	UBE2J2	chr1	-	chr1:1190868-1192371	chr1:1190868-1191424;chr1:1191506-1192371		chr1:1191425-1191505			100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	LILRA6,LILRB3	chr19	-	chr19:54722736-54722997;chr19:54722675-54722997	chr19:54722708-54722997		chr19:54722675-54722707;chr19:54722708-54722735	chr19:54722674-54722675;chr19:54722707-54722708		93.60	100.00	92.54	89.66	94.74	92.16	94.74	97.59	96.08	96.88	91.67	97.06	100.00	96.58	95.45	95.65	NA	94.74	92.31	94.50	94.44	93.75	90.91	90.91	NA	95.22	93.42	95.08	93.75	94.55	94.23	94.87	NA	91.30	100.00	92.00	97.37	94.86	-2.51	0.511557	0.800006
N	alternative_acceptor	SMCHD1	chr18	+	chr18:2796520-2800520;chr18:2796520-2802525	chr18:2796520-2799278		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		1.56	0.00	3.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.32	NA	0.00	0.00	0.00	NA	1.20	0.00	0.00	0.00	0.00	0.00	1.59	0.00	5.00	NA	2.63	0.00	0.60	0.60	0.078157	0.585944
N	alternative_acceptor		chr6	-	chr6:109767561-109767881	chr6:109767616-109767881		chr6:109767561-109767615	chr6:109767560-109767561		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	94.74	100.00	NA	94.74	NA	100.00	100.00	93.33	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	LILRB5	chr19	-	chr19:54756753-54758227;chr19:54756851-54758227	chr19:54756753-54757880,chr19:54756851-54757880;chr19:54757929-54758227		chr19:54757881-54757928			100.00	92.73	NA	100.00	95.24	100.00	98.53	100.00	NA	100.00	100.00	100.00	97.00	96.00	NA	97.50	96.98	97.70	100.00	100.00	NA	100.00	95.52	91.18	89.66	98.65	100.00	94.29	93.62	100.00	100.00	NA	93.75	87.88	94.34	96.61	95.38	100.00	4.62	0.063771	0.621473
N	jcn_only_AA	MFSD11	chr17	+	chr17:74772624-74774282;chr17:74772624-74777122;chr17:74772624-74774269	chr17:74772624-74774301		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		0.00	0.00	1.39	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	1.82	6.38	0.00	0.00	0.00	5.88	2.90	0.00	0.00	0.00	2.70	0.00	0.91	0.91	0.138369	0.663989
N	alternative_last_exon	GIMAP2	chr7	+	chr7:150384176-150387246;chr7:150384176-150386576;chr7:150384176-150416129	chr7:150384176-150389402	chr7:150386577-150386790;chr7:150416130-150416178	chr7:150389403-150390729			95.51	100.00	96.72	NA	84.62	NA	95.93	96.69	96.47	100.00	93.18	100.00	98.84	95.54	94.03	90.00	100.00	100.00	87.50	93.41	89.47	NA	94.12	92.86	NA	99.33	98.36	95.12	96.43	96.43	100.00	92.96	NA	94.12	94.44	94.74	97.39	96.12	-1.27	0.715477	0.821473
N	alternative_donor	CSF1R	chr5	-	chr5:149441413-149446584;chr5:149441413-149446588	chr5:149441413-149447777		chr5:149446585-149446588;chr5:149446589-149447777	chr5:149446588-149446589;chr5:149447777-149447778		99.17	98.22	99.19	100.00	100.00	NA	100.00	99.77	100.00	100.00	99.83	100.00	99.74	99.76	100.00	99.62	99.83	100.00	90.48	99.62	100.00	100.00	99.74	100.00	96.55	99.64	99.52	99.44	99.63	100.00	100.00	100.00	100.00	100.00	99.51	100.00	98.98	99.70	0.72	0.211622	0.583421
K	intron_retention	ARAP1	chr11	-	chr11:72410598-72412693				chr11:72410597-72410598;chr11:72412693-72412694		0.00	3.75	0.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.49	0.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.12	0.00	0.46	0.00	1.43	0.00	0.00	0.00	3.12	0.00	0.00	0.00	2.08	0.00	-2.08	0.419640	1.000000
K	intron_retention		chr3	-	chr3:127295540-127295663				chr3:127295539-127295540;chr3:127295663-127295664		6.00	0.00	7.14	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	4.76	0.00	2.94	5.05	3.70	0.00	3.39	2.50	0.00	2.27	1.25	3.90	5.41	10.00	1.15	1.03	0.65	0.00	3.65	3.65	0.993384	1.000000
K	intron_retention	DGAT1	chr8	-	chr8:145540773-145540849				chr8:145540772-145540773;chr8:145540849-145540850		29.17	32.31	36.59	26.92	31.82	14.29	5.88	NA	7.69	0.00	4.55	0.00	11.54	NA	23.53	0.00	11.76	0.00	29.17	40.00	35.29	31.82	27.50	25.00	26.83	28.57	29.03	37.50	23.26	20.00	45.00	38.24	28.57	17.86	27.59	23.33	27.70	34.59	6.89	0.125356	1.000000
K	cassette	CAMTA1	chr1	+	chr1:6867149-6885151;chr1:6845636-6885151	chr1:6867149-6880240,chr1:6845636-6880240;chr1:6880311-6885151		chr1:6880241-6880310			68.97	85.29	69.44	66.67	67.86	68.97	73.68	91.84	85.42	88.46	78.67	84.13	79.37	88.64	80.43	83.50	85.51	90.74	73.68	73.08	71.43	83.33	72.73	77.50	53.33	80.00	75.00	86.05	75.00	80.88	51.85	64.71	53.33	80.56	84.85	83.67	73.68	76.54	2.86	0.479941	0.771310
N	jcn_only_AD		chr19	-	chr19:50484271-50485074;chr19:50484271-50485124	chr19:50484271-50491628		chr19:50485075-50485124;chr19:50485125-50491628	chr19:50485124-50485125;chr19:50491628-50491629		100.00	100.00	92.50	100.00	95.65	94.74	100.00	100.00	95.24	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	90.91	95.45	88.89	100.00	100.00	100.00	100.00	100.00	0.00	0.865062	0.930693
K	coord_cassette	BAX	chr19	+	chr19:49458220-49459454	chr19:49458220-49458943;chr19:49458971-49458971;chr19:49459091-49459454		chr19:49458944-49458970;chr19:49458972-49459090			94.52	94.82	96.58	100.00	96.49	100.00	100.00	95.95	93.40	94.64	94.67	93.33	98.36	98.73	97.20	96.74	96.63	100.00	98.37	96.30	93.88	94.03	94.78	97.30	89.26	100.00	94.07	95.89	96.00	100.00	96.12	93.75	95.42	98.94	98.33	97.00	96.89	96.21	-0.68	0.627744	0.795482
N	alternative_donor	APOA1BP	chr1	+	chr1:156563348-156563673	chr1:156563365-156563673		chr1:156563348-156563364	chr1:156563347-156563348		3.45	1.04	5.00	0.00	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	1.59	0.00	1.75	9.09	0.00	0.00	3.03	0.00	0.00	3.03	1.47	4.35	2.08	0.00	1.23	0.00	-1.23	0.433225	0.695110
N	cassette	ATP5F1	chr1	+	chr1:111992496-111999251	chr1:111992496-111998848;chr1:111998872-111999251		chr1:111998849-111998871			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.40	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.89	100.00	90.00	94.12	97.30	97.44	100.00	98.70	100.00	100.00	0.00	0.872901	0.956232
K	cassette	SUMF2	chr7	+	chr7:56140805-56145794;chr7:56141912-56145794	chr7:56141912-56144526,chr7:56140805-56144526;chr7:56144583-56145794		chr7:56144527-56144582			100.00	97.62	100.00	NA	100.00	NA	96.92	100.00	97.62	100.00	98.36	100.00	98.41	100.00	98.31	97.30	96.36	100.00	87.50	100.00	94.12	100.00	95.74	100.00	88.89	100.00	94.12	100.00	92.31	100.00	93.75	87.50	100.00	100.00	100.00	95.38	97.27	100.00	2.73	0.133122	0.709176
K	alternative_acceptor	STARD3	chr17	+	chr17:37814280-37814657;chr17:37814280-37814665	chr17:37814280-37814520		chr17:37814521-37814657;chr17:37814658-37814665	chr17:37814657-37814658;chr17:37814665-37814666		5.56	0.00	4.17	NA	7.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.79	3.23	6.25	0.00	0.00	0.00	10.00	3.57	6.25	0.00	2.63	0.00	0.00	3.45	4.55	0.00	6.06	NA	4.17	6.12	7.14	0.00	10.00	3.23	0.90	3.51	2.61	0.930255	0.979440
N	alternative_acceptor	SSBP1	chr7	+	chr7:141445385-141450110	chr7:141445385-141448615		chr7:141448616-141450110	chr7:141450110-141450111		4.88	2.52	7.84	0.83	1.30	0.50	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	1.11	0.00	0.51	2.04	1.52	2.99	2.33	2.70	1.55	4.17	4.17	1.09	1.35	0.70	5.13	5.08	1.98	3.03	4.95	5.05	1.03	3.10	2.08	0.172055	0.660713
N	jcn_only_AD	SIPA1	chr11	+	chr11:65415130-65416732;chr11:65416647-65416732	chr11:65415083-65416732		chr11:65415083-65415129;chr11:65415130-65416646	chr11:65415082-65415083;chr11:65415129-65415130		2.38	2.83	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.56	0.00	6.00	0.00	6.59	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.17	3.95	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.545676	0.764991
K	intron_retention	PLK3	chr1	+	chr1:45269364-45269602				chr1:45269363-45269364;chr1:45269602-45269603		3.23	0.00	6.15	4.44	0.00	0.00	0.00	1.64	0.00	1.67	2.38	1.41	0.00	0.00	0.00	1.12	0.00	0.00	0.00	2.70	0.00	4.00	4.44	3.05	NA	0.80	2.27	6.25	4.35	2.00	5.43	5.17	0.00	5.32	4.49	4.02	0.00	2.17	2.17	0.242608	1.000000
K	jcn_only_AA	SCYL1	chr11	+	chr11:65305352-65305474	chr11:65305352-65305437		chr11:65305438-65305474	chr11:65305474-65305475		96.88	90.60	100.00	96.83	95.38	91.95	100.00	93.18	94.44	100.00	94.87	100.00	93.18	97.56	97.30	92.21	100.00	91.43	95.00	100.00	92.97	94.44	100.00	100.00	92.41	100.00	96.05	100.00	100.00	93.33	91.55	86.90	95.19	100.00	100.00	100.00	94.09	97.22	3.13	0.299002	0.663989
K	intron_retention	PRKCSH	chr19	+	chr19:11558413-11558507				chr19:11558412-11558413;chr19:11558507-11558508		7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	5.00	0.00	0.00	16.67	5.26	NA	0.00	5.56	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention		chr19	+	chr19:55147061-55147944				chr19:55147060-55147061;chr19:55147944-55147945		25.82	22.45	25.21	74.29	46.67	74.55	6.25	4.60	8.93	8.89	8.11	13.33	2.86	7.04	16.67	16.67	8.33	27.91	48.00	32.99	36.96	57.72	52.03	68.14	33.33	23.35	24.42	60.00	40.82	55.43	24.21	33.33	31.25	46.15	41.67	57.14	26.85	23.78	-3.07	0.834011	1.000000
K	intron_retention		chr12	-	chr12:57492862-57493076				chr12:57492861-57492862;chr12:57493076-57493077		15.38	20.69	16.67	18.18	23.81	NA	3.97	1.66	1.99	0.00	2.65	0.00	3.47	1.91	4.46	2.00	2.52	3.19	17.65	15.32	12.90	26.00	24.59	20.24	15.79	8.92	19.66	16.67	17.35	11.43	22.00	22.94	36.84	16.67	21.14	17.24	16.72	12.12	-4.60	0.928420	1.000000
N	alternative_first_exon	RP11-447L10.1,TCTEX1D2	chr3	-	chr3:196043103-196044906;chr3:196043103-196044910;chr3:196043103-196065134	chr3:196043103-196050614	chr3:196044911-196045159;chr3:196065135-196065374	chr3:196050615-196050868			84.00	82.76	58.33	94.19	86.21	97.73	98.99	98.08	92.31	98.78	98.22	99.50	95.83	NA	NA	98.60	76.92	92.59	85.19	85.00	99.20	98.50	84.48	94.55	86.81	91.30	NA	97.87	91.03	96.61	96.55	82.35	95.10	95.15	94.68	95.15	90.95	91.30	0.34	0.959743	0.970649
N	cassette	CD44	chr11	+	chr11:35219794-35229651;chr11:35211613-35226058;chr11:35219794-35236398;chr11:35219794-35232792;chr11:35222743-35236398;chr11:35211613-35229651;chr11:35211613-35232792;chr11:35211613-35236398;chr11:35219794-35226058;chr11:35222743-35226058	chr11:35219794-35223217,chr11:35222743-35223217,chr11:35211613-35223217;chr11:35223335-35232792,chr11:35223335-35236398,chr11:35223335-35226058,chr11:35223335-35229651		chr11:35223218-35223334			0.11	0.00	0.13	0.61	0.00	1.86	0.00	0.39	0.94	4.01	0.45	5.87	0.00	0.39	0.42	1.88	0.11	4.02	0.00	0.15	0.25	1.42	0.24	4.37	0.00	0.16	0.20	1.30	0.50	2.85	0.19	0.27	0.00	0.57	0.33	1.71	0.00	0.17	0.17	0.006229	0.262483
K	intron_retention	GMIP	chr19	-	chr19:19746379-19746452				chr19:19746378-19746379;chr19:19746452-19746453		5.00	0.00	5.13	NA	NA	NA	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	3.64	2.94	0.00	0.00	10.00	6.90	0.00	12.50	3.23	16.67	0.00	6.78	3.12	0.00	9.09	0.00	0.00	10.00	NA	4.17	8.82	2.44	0.00	2.50	2.50	0.243904	1.000000
N	jcn_only_AA	ETV5	chr3	-	chr3:185813103-185823093;chr3:185798965-185823093;chr3:185802070-185823093;chr3:185813943-185823093;chr3:185822362-185823093	chr3:185813940-185823093					0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	2.47	0.00	9.52	0.00	5.56	7.14	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	cassette	YIPF4	chr2	+	chr2:32517418-32526450	chr2:32517418-32523302;chr2:32523381-32526450		chr2:32523303-32523380			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.23	93.75	92.59	85.71	90.62	92.31	97.50	100.00	90.91	NA	NA	100.00	95.45	NA	100.00	100.00	NA	92.31	96.77	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.941542	0.985246
N	alternative_donor	SNRPA1,VPS13C	chr15	-	chr15:101821988-101825171	chr15:101821988-101822807		chr15:101822808-101825171	chr15:101825171-101825172		4.17	0.83	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	1.89	NA	2.13	1.56	1.37	0.00	0.00	5.88	0.00	3.03	2.41	4.08	0.00	8.33	2.50	0.00	1.54	2.50	4.76	4.00	0.00	1.75	3.51	3.64	0.00	4.76	4.76	0.035283	0.349791
N	alternative_acceptor	LYL1	chr19	-	chr19:13213253-13213344;chr19:13211863-13213344	chr19:13212010-13213344		chr19:13211863-13212009;chr19:13212010-13213252	chr19:13211862-13211863;chr19:13212009-13212010		81.82	85.33	73.33	NA	82.98	NA	75.00	NA	NA	NA	77.14	NA	87.80	83.33	NA	NA	88.57	NA	80.00	69.23	72.73	NA	84.31	NA	86.05	90.00	85.71	NA	78.05	NA	NA	73.33	75.56	NA	86.36	NA	82.66	82.57	-0.09	0.918534	0.977682
N	alternative_acceptor	MAD2L2	chr1	-	chr1:11734868-11735138	chr1:11734874-11735138		chr1:11734868-11734873	chr1:11734867-11734868		94.29	100.00	100.00	93.65	100.00	94.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	95.65	91.67	96.77	92.00	100.00	96.00	100.00	100.00	92.19	100.00	100.00	96.55	95.24	93.33	100.00	95.00	100.00	96.25	100.00	97.62	-2.38	0.185843	0.660713
N	alternative_acceptor	STAT1	chr2	-	chr2:191824794-191839555;chr2:191836147-191839555	chr2:191835444-191839555		chr2:191824794-191835443;chr2:191835444-191836146	chr2:191824793-191824794;chr2:191835443-191835444		99.39	93.75	97.50	95.24	93.33	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	99.32	97.62	100.00	100.00	98.90	NA	99.28	100.00	98.28	100.00	98.80	98.89	96.81	85.71	98.08	100.00	98.68	93.75	99.35	5.60	0.114229	0.605363
K	cassette	RPS6KB2	chr11	+	chr11:67198987-67200070	chr11:67198987-67199826;chr11:67199964-67200070		chr11:67199827-67199963			3.57	7.32	4.88	NA	4.17	NA	5.13	NA	0.00	0.00	5.41	0.00	2.86	8.33	10.34	0.00	4.35	0.00	15.38	4.76	4.00	NA	6.67	0.00	28.57	0.00	11.76	0.00	3.85	0.00	6.25	6.67	4.76	6.90	3.23	0.00	6.22	4.76	-1.46	0.199504	0.709176
N	alternative_acceptor		chr16	+	chr16:31141928-31142515	chr16:31141928-31142066		chr16:31142067-31142515	chr16:31142515-31142516		100.00	100.00	100.00	89.47	88.89	100.00	NA	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	95.00	100.00	94.12	NA	100.00	NA	100.00	100.00	91.30	NA	100.00	100.00	100.00	93.55	95.12	NA	100.00	86.67	100.00	100.00	0.00	0.177850	0.660713
K	jcn_only_AA	AAMP	chr2	-	chr2:219134258-219134688	chr2:219134261-219134688		chr2:219134258-219134260	chr2:219134257-219134258		11.94	10.42	5.97	NA	0.00	NA	10.00	8.89	14.52	11.63	11.70	13.64	10.42	10.42	13.73	11.54	13.95	16.67	NA	11.36	13.79	6.67	5.77	9.52	NA	6.52	10.71	12.50	12.20	0.00	17.86	5.88	0.00	7.89	7.02	8.11	10.21	10.89	0.68	0.300745	0.663989
K	intron_retention	COMMD3-BMI1	chr10	+	chr10:22607948-22608867				chr10:22607947-22607948;chr10:22608867-22608868		1.61	5.23	7.21	6.67	4.62	10.00	0.00	0.00	2.27	0.00	1.27	0.00	1.33	0.00	2.08	0.00	0.00	NA	4.46	7.14	3.12	5.00	5.60	7.14	7.34	8.82	9.09	4.76	2.94	4.17	7.50	6.76	5.67	9.62	6.33	10.34	4.85	4.38	-0.47	0.715828	1.000000
K	alternative_acceptor	SHC1	chr1	-	chr1:154936408-154938018	chr1:154936845-154938018		chr1:154936408-154936844	chr1:154936407-154936408		4.65	4.76	8.93	NA	10.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	NA	6.98	0.00	7.69	2.22	6.06	0.00	5.88	4.35	4.17	2.86	3.12	5.26	9.30	0.00	5.56	8.70	7.14	0.00	4.96	4.96	0.103156	0.598353
N	alternative_last_exon	CSNK1G2	chr19	+	chr19:8467164-8468296	chr19:8467164-8467368	chr19:8468297-8469318	chr19:8467369-8467808			97.14	95.83	98.04	NA	95.45	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	88.24	95.24	96.15	100.00	96.77	100.00	84.62	96.43	97.56	93.75	96.97	95.83	95.65	97.56	87.50	100.00	95.83	97.06	92.03	96.78	4.75	0.154646	0.366422
N	jcn_only_AA	CD33	chr19	+	chr19:51738509-51738785;chr19:51738509-51738772	chr19:51738509-51738849		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		91.67	99.35	95.45	NA	97.56	NA	94.50	94.74	95.24	95.65	100.00	93.22	91.26	NA	92.31	91.89	94.25	85.29	91.67	82.61	93.48	100.00	88.89	94.74	100.00	100.00	96.51	94.74	88.52	96.77	70.59	90.00	92.86	89.58	88.24	91.30	93.68	91.67	-2.01	0.253730	0.663989
K	alternative_first_exon	CFL1	chr11	-	chr11:65623714-65624036,chr11:65623714-65624563,chr11:65623714-65625167,chr11:65623714-65627458,chr11:65623714-65627783,chr11:65623714-65628301,chr11:65623714-65628471;chr11:65623714-65624401,chr11:65623714-65624355;chr11:65623714-65626701;chr11:65623714-65625102;chr11:65623714-65628727	chr11:65623714-65625567	chr11:65624402-65624435;chr11:65626702-65626886;chr11:65625103-65625339;chr11:65628728-65628892	chr11:65625568-65626101			91.96	92.28	90.48	96.33	92.54	97.83	95.37	96.98	96.43	97.09	97.39	97.41	98.50	97.48	97.08	98.53	98.64	98.27	94.96	89.84	89.24	96.38	95.48	95.24	93.27	94.52	93.20	97.01	97.53	97.35	88.30	84.03	89.16	93.62	90.84	94.32	94.11	93.24	-0.88	0.719366	0.803643
N	cassette	STAB1	chr3	+	chr3:52557593-52558115;chr3:52557593-52557889;chr3:52557593-52557886;chr3:52557593-52558033	chr3:52557593-52557667;chr3:52557773-52557886,chr3:52557773-52558033,chr3:52557773-52558115,chr3:52557773-52557889		chr3:52557668-52557772			94.71	95.81	96.84	94.75	92.99	94.15	98.41	97.53	96.23	99.21	98.06	98.42	97.46	96.59	98.25	97.80	97.16	98.11	94.01	93.30	94.55	93.57	91.54	94.80	95.89	97.87	96.75	97.78	96.30	97.07	93.46	97.41	93.58	94.23	92.85	95.12	95.85	95.65	-0.20	0.806865	0.936947
K	jcn_only_AD	HSD17B10	chrX	-	chrX:53458543-53458772;chrX:53458543-53458921	chrX:53458543-53458745				chrX:53458211-53458542	86.96	82.31	77.42	81.48	86.55	87.50	92.75	100.00	100.00	100.00	100.00	94.59	86.75	93.75	94.12	95.05	95.60	94.44	83.52	76.92	94.94	84.31	81.18	87.80	83.87	NA	89.47	88.89	93.51	92.65	86.36	71.05	80.14	85.11	77.46	88.31	83.69	86.96	3.27	0.397533	0.662555
K	cassette	HNRNPH1	chr5	-	chr5:179041961-179043126	chr5:179041961-179042546;chr5:179042597-179043126		chr5:179042547-179042596			88.61	91.96	91.01	85.88	85.43	81.58	86.81	92.31	79.59	81.02	87.06	80.39	89.78	85.90	80.99	82.20	85.64	85.56	85.29	78.05	86.78	79.65	80.60	79.21	100.00	80.26	84.38	80.97	84.93	77.78	82.65	86.93	83.12	84.82	89.20	82.85	88.30	84.28	-4.02	0.170624	0.709176
K	intron_retention	UBE2N	chr12	-	chr12:93804651-93804828				chr12:93804650-93804651;chr12:93804828-93804829		4.76	0.00	3.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	0.00	0.00	2.11	3.00	3.57	0.00	0.00	4.76	1.56	0.00	1.49	0.00	3.64	0.00	2.68	3.09	3.38	0.00	0.00	0.00	0.594508	1.000000
K	cassette	EMC3	chr3	-	chr3:10019131-10028190	chr3:10019131-10023317;chr3:10023432-10028190		chr3:10023318-10023431			5.15	4.76	6.06	8.82	5.71	NA	3.39	6.85	5.38	5.68	5.15	5.45	4.96	4.41	6.32	3.31	4.85	7.50	6.25	6.67	3.90	6.94	6.84	4.41	0.00	5.97	7.94	10.45	5.49	6.25	8.11	5.88	2.33	5.41	6.32	5.77	4.08	6.32	2.25	0.040151	0.500342
K	intron_retention	LRCH4	chr7	-	chr7:100179791-100179937				chr7:100179790-100179791;chr7:100179937-100179938		2.22	0.00	3.28	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	2.04	0.00	8.00	0.00	4.95	0.00	3.03	0.00	0.00	1.05	0.00	5.26	0.00	5.36	0.00	0.47	0.47	0.940020	1.000000
N	alternative_donor	KIAA0368	chr9	-	chr9:114133046-114133900	chr9:114133046-114133170		chr9:114133171-114133900	chr9:114133900-114133901		4.76	0.00	5.56	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	2.78	5.45	2.67	5.66	0.00	3.92	4.26	0.00	0.00	0.00	6.67	6.67	0.00	4.41	4.84	5.22	0.00	4.34	4.34	0.030218	0.337600
N	alternative_acceptor		chr13	+	chr13:115030716-115037752;chr13:115030716-115035037;chr13:115030716-115037645	chr13:115030716-115037658		chr13:115035038-115037645;chr13:115037646-115037658;chr13:115037659-115037752	chr13:115037645-115037646;chr13:115037658-115037659;chr13:115037752-115037753		87.50	98.86	100.00	94.87	94.59	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	94.12	100.00	92.31	92.11	100.00	85.51	95.00	93.10	100.00	94.64	87.50	100.00	88.24	97.62	100.00	94.34	96.00	100.00	89.66	89.23	92.68	89.80	96.43	99.43	94.56	-4.87	0.683034	0.881289
N	jcn_only_AA	GCA	chr2	+	chr2:163216063-163227815;chr2:163216063-163218409;chr2:163216063-163216726;chr2:163216063-163236413;chr2:163216063-163216702	chr2:163216063-163216735		chr2:163216703-163216726;chr2:163216727-163216735;chr2:163216736-163218409;chr2:163218410-163227815;chr2:163227816-163236413	chr2:163216726-163216727;chr2:163216735-163216736;chr2:163218409-163218410;chr2:163227815-163227816;chr2:163236413-163236414		2.68	1.72	1.70	0.00	8.33	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	2.91	0.00	0.00	2.38	2.41	6.00	3.64	1.60	0.00	0.00	0.00	4.26	1.94	4.08	0.00	0.00	0.98	0.86	2.79	1.94	0.830640	0.932795
N	cassette	DAP3	chr1	+	chr1:155701825-155707947;chr1:155701207-155707947	chr1:155701825-155706736,chr1:155701207-155706736;chr1:155706855-155707947		chr1:155706737-155706854			95.35	100.00	96.10	93.55	97.87	96.00	100.00	97.30	95.83	97.22	100.00	100.00	96.55	100.00	98.48	95.59	100.00	100.00	92.71	95.65	97.65	97.33	97.83	100.00	93.10	98.65	91.67	100.00	97.30	95.74	95.52	96.63	89.62	94.19	94.44	96.47	94.82	96.47	1.65	0.387665	0.709410
K	intron_retention	ZNF687	chr1	+	chr1:151262484-151262597				chr1:151262483-151262484;chr1:151262597-151262598		3.03	0.00	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	10.00	0.00	0.00	2.44	0.00	0.00	0.00	3.57	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	XAB2	chr19	-	chr19:7684534-7684632				chr19:7684533-7684534;chr19:7684632-7684633		5.88	8.06	10.34	9.26	5.00	6.81	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	NA	NA	6.18	13.33	8.51	6.25	5.41	6.25	3.30	0.00	0.00	4.35	5.56	4.08	22.06	12.73	11.43	8.00	0.00	6.90	4.74	2.94	-1.80	0.887203	1.000000
K	alternative_last_exon	SUCLG2	chr3	-	chr3:67426930-67451154;chr3:67411193-67451154	chr3:67426284-67451154	chr3:67410884-67411192	chr3:67425143-67426283			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	89.47	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.535374
N	alternative_acceptor	RMDN1	chr8	-	chr8:87487144-87489522;chr8:87487183-87489522	chr8:87487826-87489522		chr8:87487144-87487182;chr8:87487183-87487825	chr8:87487143-87487144;chr8:87487182-87487183		11.11	9.76	13.16	11.11	9.09	5.56	3.45	0.00	4.76	0.00	2.22	0.00	4.17	0.00	3.33	0.00	2.63	0.00	9.30	7.69	7.14	NA	9.09	NA	13.04	11.76	6.45	0.00	3.33	8.33	16.67	17.39	9.68	11.11	13.64	12.50	9.49	9.40	-0.09	0.911117	0.972653
K	intron_retention	DENND4B	chr1	-	chr1:153905796-153905958				chr1:153905795-153905796;chr1:153905958-153905959		2.63	0.00	6.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	2.33	0.00	0.00	2.50	0.00	20.00	0.00	4.26	0.00	3.70	0.00	0.00	2.17	NA	2.94	5.26	4.26	0.00	0.00	0.00	0.506906	1.000000
N	alternative_donor	EHBP1L1	chr11	+	chr11:65341234-65346548;chr11:65343878-65346548	chr11:65345750-65346548		chr11:65341234-65343877;chr11:65343878-65345749	chr11:65341233-65341234;chr11:65343877-65343878		22.22	12.20	22.58	7.14	3.45	NA	2.94	2.44	0.00	0.00	0.00	NA	2.70	4.55	6.45	0.00	3.57	NA	6.90	21.21	3.17	NA	7.69	NA	12.50	19.44	12.00	9.09	5.00	10.00	16.67	18.60	4.88	14.29	14.29	16.67	5.89	18.05	12.16	0.102873	0.504923
K	cassette	PPP1CA	chr11	-	chr11:67168391-67169198	chr11:67168391-67168538;chr11:67168704-67169198		chr11:67168539-67168703			81.00	91.67	83.05	76.19	74.03	NA	95.31	95.28	94.34	93.20	96.11	95.70	96.57	94.79	94.85	93.20	95.05	95.24	79.31	87.01	87.72	68.85	76.87	78.85	NA	89.83	82.98	74.58	84.44	89.47	88.71	84.54	77.50	80.52	79.59	80.95	91.67	89.27	-2.40	0.775506	0.933202
N	alternative_acceptor	SLC26A11	chr17	+	chr17:78223087-78223980;chr17:78223087-78223764;chr17:78223087-78223974;chr17:78223087-78225127	chr17:78223087-78224971		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		4.35	1.82	0.00	0.00	7.69	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	5.00	0.00	0.00	5.71	11.83	6.82	4.76	9.68	4.35	7.14	9.23	0.00	2.08	0.00	0.00	5.00	0.00	3.57	0.91	2.08	1.17	0.551008	0.824249
K	cassette	SNX17	chr2	+	chr2:27594211-27596113;chr2:27593674-27596113	chr2:27594211-27595489,chr2:27593674-27595489;chr2:27595608-27596113		chr2:27595490-27595607			97.14	100.00	95.52	NA	100.00	NA	99.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	95.71	100.00	100.00	100.00	96.77	100.00	100.00	94.83	100.00	NA	100.00	98.08	96.00	97.83	95.65	94.44	100.00	NA	95.24	96.97	97.92	100.00	98.57	-1.43	0.136592	0.709176
K	cassette	ECHDC1	chr6	-	chr6:127636042-127648146;chr6:127636042-127637594	chr6:127636042-127637078;chr6:127637120-127637594,chr6:127637120-127648146		chr6:127637079-127637119			10.00	0.00	2.56	NA	0.00	NA	0.00	0.00	3.03	0.00	0.00	3.70	0.00	NA	3.70	0.00	0.00	0.00	0.00	0.00	8.33	0.00	4.35	0.00	NA	0.00	5.88	0.00	0.00	0.00	NA	9.09	NA	10.53	3.12	4.76	0.00	0.00	0.00	0.391002	0.709410
N	jcn_only_AA	BLMH	chr17	-	chr17:28591035-28593902;chr17:28588783-28593902	chr17:28576187-28593902		chr17:28576187-28588782;chr17:28588783-28591034	chr17:28576186-28576187;chr17:28588782-28588783		100.00	94.12	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention		chr19	+	chr19:50046010-50046362				chr19:50046009-50046010;chr19:50046362-50046363		3.57	4.47	0.00	0.00	5.36	0.00	0.00	NA	NA	NA	0.00	NA	7.69	NA	NA	0.00	0.00	0.00	2.58	3.57	0.00	0.00	1.41	0.00	2.94	0.00	7.69	0.00	5.66	0.00	0.00	0.00	3.10	0.00	3.70	0.00	3.02	1.78	-1.24	0.768134	1.000000
K	intron_retention	MAPKAPK3	chr3	+	chr3:50681964-50683140				chr3:50681963-50681964;chr3:50683140-50683141		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	1.72	0.00	14.29	0.00	0.00	0.00	0.00	NA	NA	0.00	16.67	0.00	2.00	4.35	3.57	0.00	-3.57	0.495834	1.000000
K	jcn_only_AA	PTPN6	chr12	+	chr12:7060895-7061275;chr12:7060895-7061074;chr12:7060895-7061179	chr12:7060895-7061145		chr12:7061075-7061145;chr12:7061146-7061179;chr12:7061180-7061275	chr12:7061145-7061146;chr12:7061179-7061180;chr12:7061275-7061276		90.81	83.64	89.44	93.75	98.15	NA	96.24	98.09	100.00	95.14	97.77	100.00	95.53	94.86	96.43	97.61	96.82	93.75	100.00	89.34	97.30	88.89	89.02	100.00	100.00	94.07	91.78	93.75	95.16	NA	82.93	91.38	NA	90.98	92.46	86.05	96.24	92.44	-3.80	0.386786	0.663989
K	intron_retention	RFXANK	chr19	+	chr19:19309042-19309465				chr19:19309041-19309042;chr19:19309465-19309466		0.00	3.42	5.13	3.33	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	2.17	2.70	0.00	5.77	0.00	1.60	2.27	6.00	0.00	0.00	0.00	5.56	1.59	4.65	5.56	2.94	6.45	2.12	1.08	-1.03	0.940231	1.000000
K	cassette	SIRT6	chr19	-	chr19:4179284-4182470	chr19:4179284-4180778;chr19:4180907-4182470		chr19:4180779-4180906			85.00	73.68	80.95	NA	86.67	NA	100.00	89.47	94.74	86.67	92.86	NA	87.50	94.74	100.00	87.50	93.75	NA	NA	86.96	91.67	100.00	83.33	NA	NA	86.67	100.00	100.00	88.89	92.31	83.33	91.67	76.92	100.00	85.00	94.12	82.21	86.81	4.60	0.638154	0.868138
K	intron_retention	FARSA	chr19	-	chr19:13039272-13039348				chr19:13039271-13039272;chr19:13039348-13039349		30.77	13.64	14.63	6.67	9.38	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	11.76	6.52	11.11	4.23	12.00	NA	7.69	4.88	5.71	2.17	0.00	50.00	23.68	17.39	7.69	5.45	13.04	4.00	9.72	5.72	0.619799	1.000000
N	alternative_donor	NCAPH2	chr22	+	chr22:50957840-50959393;chr22:50958067-50959393	chr22:50957750-50959393		chr22:50957750-50957839;chr22:50957840-50958066	chr22:50957749-50957750;chr22:50957839-50957840		94.12	97.96	93.33	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	96.67	NA	NA	100.00	92.59	NA	96.30	84.21	85.00	100.00	88.89	NA	98.25	85.00	86.96	NA	100.00	NA	93.55	88.46	94.44	84.21	96.43	93.10	97.31	89.28	-8.04	0.051920	0.400642
N	alternative_acceptor	CD36	chr7	+	chr7:80303464-80305699;chr7:80303464-80305455;chr7:80303464-80305044	chr7:80303464-80305423		chr7:80305045-80305423;chr7:80305424-80305455;chr7:80305456-80305699	chr7:80305423-80305424;chr7:80305455-80305456;chr7:80305699-80305700		0.00	2.70	17.39	NA	10.91	NA	3.96	0.00	0.00	3.36	5.23	4.48	7.22	0.00	NA	6.20	8.26	4.67	11.43	NA	0.00	14.61	18.86	16.67	0.00	5.41	14.06	5.51	6.45	2.40	0.00	10.00	7.32	6.37	11.76	6.57	5.59	0.00	-5.59	0.057259	0.570243
N	cassette	MAF1	chr8	+	chr8:145160901-145161245	chr8:145160901-145160978;chr8:145161145-145161245		chr8:145160979-145161144			96.77	100.00	97.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.72	94.38	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.174704	0.709176
K	cassette	GIPC1	chr19	-	chr19:14590337-14591404	chr19:14590337-14591116;chr19:14591298-14591404		chr19:14591117-14591297			100.00	100.00	100.00	NA	94.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	93.55	NA	100.00	100.00	100.00	NA	96.88	NA	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	POLR3GL	chr1	-	chr1:145457105-145457235				chr1:145457104-145457105;chr1:145457235-145457236		7.04	9.52	10.00	0.00	10.20	NA	1.47	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	1.49	0.00	7.55	3.39	3.77	13.33	8.70	0.00	11.11	4.84	7.35	0.00	5.26	0.00	10.17	8.79	16.22	4.35	9.80	10.00	8.54	4.12	-4.42	0.706220	1.000000
K	intron_retention	SCNM1	chr1	+	chr1:151138680-151138946				chr1:151138679-151138680;chr1:151138946-151138947		4.76	7.41	8.11	NA	0.00	NA	0.00	0.00	0.00	0.00	4.35	0.00	4.17	0.00	3.03	4.35	0.00	0.00	0.00	5.26	3.57	NA	0.00	0.00	NA	2.27	6.25	0.00	0.00	0.00	9.38	2.38	6.67	0.00	5.26	8.00	4.17	3.51	-0.66	0.999774	1.000000
N	jcn_only_AD	MARCKS	chr6	+	chr6:114180041-114180858;chr6:114180549-114180858;chr6:114179958-114180858;chr6:114180383-114180858	chr6:114179024-114180858		chr6:114179024-114179957;chr6:114179958-114180040;chr6:114180041-114180382;chr6:114180383-114180548	chr6:114179023-114179024;chr6:114179957-114179958;chr6:114180040-114180041;chr6:114180382-114180383		100.00	100.00	99.49	100.00	100.00	NA	99.69	98.74	98.01	95.27	99.10	91.83	100.00	98.87	97.78	97.86	99.70	95.46	100.00	99.71	100.00	98.40	99.04	96.04	100.00	99.09	99.46	100.00	100.00	98.64	100.00	99.04	100.00	98.98	100.00	98.02	100.00	99.40	-0.60	0.065921	0.581769
N	alternative_acceptor		chr11	+	chr11:67069295-67069599	chr11:67069295-67069589		chr11:67069590-67069599	chr11:67069599-67069600		100.00	97.36	98.73	88.89	97.71	100.00	100.00	100.00	100.00	NA	100.00	NA	97.06	100.00	100.00	NA	100.00	NA	97.07	100.00	99.02	NA	96.83	NA	97.70	100.00	97.10	NA	95.56	NA	100.00	98.77	96.55	100.00	100.00	100.00	97.22	100.00	2.78	0.005088	0.405868
K	alternative_acceptor	HCK	chr20	+	chr20:30661165-30661521	chr20:30661165-30661518		chr20:30661519-30661521	chr20:30661521-30661522		64.10	65.79	61.27	63.16	69.57	NA	72.31	68.65	70.17	67.55	68.14	71.19	63.71	68.52	68.11	69.23	69.12	75.00	68.75	63.11	63.53	66.13	57.30	69.60	40.00	65.37	65.04	75.93	60.78	69.23	69.43	62.43	57.14	73.42	60.31	65.67	64.75	66.94	2.19	0.325439	0.709013
K	intron_retention	PEX16	chr11	-	chr11:45935755-45935866				chr11:45935754-45935755;chr11:45935866-45935867		14.29	6.45	23.08	11.11	12.50	13.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.38	18.75	16.13	NA	18.75	NA	0.00	15.38	11.76	18.75	11.11	25.00	13.33	22.22	10.34	30.00	40.00	28.57	3.23	13.81	10.58	0.922680	1.000000
K	intron_retention	SERPINB8	chr18	+	chr18:61652480-61654196				chr18:61652479-61652480;chr18:61654196-61654197		54.17	65.22	66.67	62.86	60.00	61.54	66.67	71.43	50.00	54.55	62.86	57.14	70.59	69.39	76.67	75.00	60.00	70.00	57.14	64.52	64.00	60.00	65.00	56.76	45.45	58.33	73.33	65.38	64.58	62.50	64.86	56.00	53.85	69.05	56.52	55.10	61.18	64.69	3.51	0.990175	1.000000
K	intron_retention	SRSF3	chr6	+	chr6:36568054-36568928				chr6:36568053-36568054;chr6:36568928-36568929		34.78	43.48	43.86	21.21	11.43	9.68	20.00	7.41	10.00	13.33	14.81	10.71	21.43	0.00	20.83	13.04	NA	26.67	25.00	40.54	10.34	37.50	40.00	34.78	21.05	16.67	23.91	14.29	25.00	9.38	27.69	29.63	20.83	41.07	43.48	39.73	21.24	22.18	0.94	0.774580	1.000000
K	coord_cassette	SAP30BP	chr17	+	chr17:73667944-73689519	chr17:73667944-73686750;chr17:73686853-73687473;chr17:73687612-73689519		chr17:73686751-73686852;chr17:73687474-73687611			1.59	2.38	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	2.47	2.33	1.04	0.95	4.67	0.00	1.71	1.30	1.54	0.00	1.09	1.54	6.85	0.00	1.04	1.37	2.70	0.00	1.56	1.56	0.179876	0.643829
N	alternative_last_exon	CFLAR	chr2	+	chr2:202014559-202025435;chr2:202014559-202018859;chr2:202014559-202028557	chr2:202014559-202025154	chr2:202018860-202019299;chr2:202028558-202041410	chr2:202025155-202025666			96.95	95.00	96.54	95.12	97.06	94.03	97.53	97.21	96.84	97.01	98.61	97.93	98.57	97.82	96.35	96.17	97.37	97.93	92.00	97.42	95.92	97.41	96.23	96.16	NA	97.52	97.46	97.48	97.44	95.88	96.85	96.61	92.86	97.51	97.06	96.56	95.00	97.31	2.31	0.174961	0.396864
K	alternative_acceptor	FDXR	chr17	-	chr17:72863002-72868160;chr17:72863021-72868160	chr17:72862999-72868160		chr17:72862999-72863001;chr17:72863002-72863020	chr17:72862998-72862999;chr17:72863001-72863002		92.31	86.67	84.62	NA	NA	NA	91.67	NA	92.86	NA	88.24	NA	92.59	90.00	94.12	NA	NA	NA	91.67	88.24	92.86	NA	NA	NA	100.00	NA	85.71	NA	NA	NA	92.00	90.77	86.67	NA	86.67	90.00	91.67	91.00	-0.67	0.694384	0.884684
K	alternative_donor	RPL14	chr3	+	chr3:40499239-40499380;chr3:40498966-40499380	chr3:40498855-40499380		chr3:40498855-40498965;chr3:40498966-40499238	chr3:40498854-40498855;chr3:40498965-40498966		93.33	95.83	89.55	95.45	96.69	93.94	97.27	93.75	91.30	96.08	97.84	97.28	98.27	92.86	91.80	95.97	98.64	97.44	98.63	100.00	94.05	95.15	95.36	93.07	96.49	95.83	89.47	96.15	95.80	95.28	82.86	87.10	95.12	94.94	95.95	95.28	96.88	93.54	-3.34	0.162310	0.563271
N	jcn_only_AA	TNFSF13B	chr13	+	chr13:108922583-108922687	chr13:108922583-108922672		chr13:108922673-108922687	chr13:108922687-108922688		3.47	0.00	0.00	NA	0.00	0.00	0.00	0.94	1.74	0.00	0.00	2.13	1.22	1.84	2.39	2.70	0.00	1.80	NA	0.00	0.00	NA	4.76	2.78	0.00	3.50	0.00	0.00	0.00	3.55	2.59	0.00	NA	5.88	7.69	3.10	0.00	2.21	2.21	0.029863	0.637417
K	cassette	SFT2D1	chr6	-	chr6:166743736-166755906	chr6:166743736-166744872;chr6:166744896-166755906		chr6:166744873-166744895			0.86	1.28	1.03	0.00	1.72	0.00	0.00	1.35	0.00	3.03	1.41	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	1.39	1.56	0.00	4.12	3.45	0.00	1.06	3.23	2.56	3.26	6.12	1.33	0.00	1.85	0.00	1.16	2.38	0.00	1.20	1.20	0.267157	0.709176
N	alternative_donor	HNMT	chr2	+	chr2:138759765-138762701;chr2:138761703-138762701	chr2:138759914-138762701		chr2:138759765-138759913;chr2:138759914-138761702	chr2:138759764-138759765;chr2:138759913-138759914		6.00	0.00	6.48	NA	NA	NA	1.87	3.24	4.35	2.78	2.63	3.03	2.18	3.48	0.00	3.08	3.53	4.00	NA	3.39	7.14	8.33	6.45	6.67	NA	6.51	4.29	5.88	5.45	0.00	3.45	7.69	10.00	5.26	4.00	6.25	2.03	3.46	1.44	0.738127	0.891105
N	alternative_donor	MNDA	chr1	+	chr1:158817707-158818979;chr1:158817876-158818979	chr1:158817680-158818979		chr1:158817680-158817706;chr1:158817707-158817875	chr1:158817679-158817680;chr1:158817706-158817707		7.26	3.69	6.45	2.94	0.00	8.88	5.98	9.97	6.21	10.53	9.43	9.63	8.39	8.62	8.16	7.46	9.09	11.39	10.08	11.05	13.48	10.81	7.69	6.92	7.98	6.70	9.09	4.90	8.22	8.81	8.54	9.47	12.32	5.97	11.90	6.33	8.19	8.58	0.39	0.672275	0.857020
K	intron_retention	CTD-3214H19.4,STXBP2	chr19	+	chr19:7706740-7706919				chr19:7706739-7706740;chr19:7706919-7706920		7.51	12.20	10.46	6.90	10.34	0.00	0.00	1.32	0.00	1.22	0.00	0.00	1.20	0.57	4.20	1.15	0.68	0.00	6.38	5.43	4.95	6.82	6.03	5.88	21.28	6.85	8.11	10.00	7.79	6.25	7.55	11.94	6.82	8.24	10.20	9.80	6.60	6.14	-0.46	0.897718	1.000000
K	cassette	C17orf62	chr17	-	chr17:80407357-80408575;chr17:80407169-80408575	chr17:80407169-80408074,chr17:80407357-80408074;chr17:80408131-80408575		chr17:80408075-80408130			5.56	0.00	2.86	NA	NA	NA	1.82	1.41	0.97	0.00	0.00	0.00	1.56	1.47	1.04	0.00	0.00	NA	NA	4.65	4.76	NA	0.00	0.00	0.00	5.56	0.00	0.00	0.00	6.67	0.00	5.08	NA	0.00	0.00	0.00	0.78	3.06	2.28	0.080246	0.641134
K	intron_retention	KAT5	chr11	+	chr11:65484454-65486060				chr11:65484453-65484454;chr11:65486060-65486061		11.76	10.53	8.16	0.00	6.98	0.00	2.22	0.00	3.51	0.00	2.13	0.00	3.77	0.00	3.51	1.82	2.38	0.00	9.52	6.25	2.78	4.35	8.33	2.94	0.00	2.22	7.50	6.90	8.82	2.86	7.41	9.30	8.70	7.50	11.43	5.36	6.23	4.24	-2.00	0.662103	1.000000
K	coord_cassette	DNAJC4	chr11	+	chr11:63999437-64001365	chr11:63999437-63999981;chr11:64000087-64000172;chr11:64000338-64001365		chr11:63999982-64000086;chr11:64000173-64000337			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	92.86	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	94.00	100.00	100.00	90.91	100.00	100.00	0.00	0.363217	0.643829
N	cassette	PLXNB2	chr22	-	chr22:50729027-50745981	chr22:50729027-50733154;chr22:50733208-50745981		chr22:50733155-50733207			100.00	100.00	72.22	NA	NA	NA	82.35	79.17	71.43	NA	100.00	NA	100.00	100.00	100.00	100.00	84.62	NA	NA	100.00	NA	NA	100.00	NA	100.00	75.00	72.22	NA	NA	NA	NA	78.95	NA	NA	87.50	NA	100.00	100.00	0.00	0.528784	0.804319
K	jcn_only_AD	ARHGAP9	chr12	-	chr12:57869399-57869615	chr12:57869399-57869558		chr12:57869559-57869615	chr12:57869615-57869616		6.90	7.02	8.82	NA	0.00	NA	4.00	0.00	NA	0.00	4.76	NA	2.20	10.00	NA	NA	0.00	NA	0.00	0.00	7.69	NA	3.23	NA	5.88	0.00	12.90	NA	12.00	NA	NA	6.67	8.33	8.33	8.70	0.00	4.94	0.00	-4.94	0.646081	0.818639
K	jcn_only_AA	ALG13,NGFRAP1	chrX	+	chrX:102632035-102632437	chrX:102632035-102632390		chrX:102632391-102632437	chrX:102632437-102632438		12.24	7.26	6.90	0.00	9.52	8.82	9.30	0.00	9.09	10.26	19.15	7.32	10.92	11.76	18.75	10.23	14.57	14.13	4.94	9.68	12.33	10.53	4.12	8.62	0.00	13.79	9.84	13.64	9.89	10.00	5.00	20.00	5.00	8.33	7.50	6.78	6.13	10.72	4.59	0.370211	0.663989
K	intron_retention		chr19	+	chr19:3527061-3527628				chr19:3527060-3527061;chr19:3527628-3527629		0.00	10.00	3.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	NA	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.38	0.00	1.79	0.00	0.00	0.00	0.612201	1.000000
N	alternative_acceptor	SYNGR2	chr17	+	chr17:76167731-76167931;chr17:76167731-76167819;chr17:76167731-76167879	chr17:76167731-76167846		chr17:76167820-76167846;chr17:76167847-76167879;chr17:76167880-76167931	chr17:76167846-76167847;chr17:76167879-76167880;chr17:76167931-76167932		1.64	0.00	2.20	2.86	2.38	0.00	0.00	0.24	0.16	0.00	0.27	0.00	0.37	0.00	0.00	0.00	0.00	0.00	7.14	4.48	2.01	1.32	2.63	3.57	0.00	1.18	1.84	0.00	0.53	0.00	6.25	2.47	8.89	2.80	1.92	1.79	0.18	1.41	1.22	0.830940	0.940678
N	cassette	BUD13	chr11	-	chr11:116627944-116628984	chr11:116627944-116628481;chr11:116628667-116628984		chr11:116628482-116628666			100.00	100.00	100.00	NA	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	COPZ1	chr12	+	chr12:54718966-54735989	chr12:54718966-54734330;chr12:54734400-54735989		chr12:54734331-54734399			100.00	100.00	97.01	NA	100.00	NA	100.00	97.56	98.53	100.00	96.74	100.00	97.86	95.12	96.67	100.00	98.88	100.00	94.44	94.64	100.00	95.35	98.77	100.00	100.00	100.00	96.49	100.00	100.00	97.92	100.00	96.08	100.00	100.00	100.00	98.36	100.00	98.78	-1.22	0.561680	0.824117
N	alternative_donor	PNISR	chr6	-	chr6:99848188-99848462;chr6:99848188-99850415	chr6:99848188-99848419		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		96.77	100.00	96.88	NA	100.00	NA	90.00	NA	100.00	90.00	100.00	NA	100.00	NA	95.00	90.91	95.00	NA	100.00	89.66	78.57	95.65	97.73	89.66	100.00	96.15	92.45	90.48	97.14	76.92	77.27	87.76	68.75	89.19	95.24	97.30	100.00	92.91	-7.09	0.656783	0.846001
N	alternative_acceptor	CLEC2B	chr12	-	chr12:10007084-10010072;chr12:10007073-10010072	chr12:10009841-10010072		chr12:10007073-10007083;chr12:10007084-10009840	chr12:10007072-10007073;chr12:10007083-10007084		4.24	1.91	10.53	0.00	1.82	0.00	1.61	2.08	2.50	0.00	2.04	0.00	1.41	0.00	0.00	0.00	1.49	0.00	1.52	4.65	0.82	3.70	3.33	0.00	0.51	3.33	4.76	2.86	2.70	0.00	3.64	5.76	1.53	9.43	9.84	2.78	1.52	3.49	1.96	0.074534	0.585944
K	alternative_last_exon	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24679029-24679553,chr14:24672334-24679553;chr14:24664243-24679553	chr14:24679142-24679553	chr14:24663881-24664242	chr14:24678789-24679141			98.88	99.50	98.80	98.53	98.77	99.39	97.30	98.00	97.47	96.43	97.67	95.65	98.55	96.43	98.72	98.25	97.06	94.44	100.00	98.73	99.34	97.56	97.73	96.88	99.65	98.36	97.37	97.87	98.52	98.82	96.97	94.32	98.98	97.83	95.89	93.55	99.24	98.18	-1.06	0.080920	0.283982
N	alternative_acceptor	FBXW5	chr9	-	chr9:139836137-139836497	chr9:139836320-139836497		chr9:139836137-139836319	chr9:139836136-139836137		17.86	18.92	17.24	24.14	23.40	28.57	2.15	3.57	3.45	3.45	2.68	1.89	2.17	7.14	7.77	6.33	2.44	2.22	22.73	16.67	15.05	25.00	29.63	25.81	10.00	9.23	16.90	11.90	14.55	13.64	21.43	16.00	18.92	19.51	21.28	15.94	14.46	12.95	-1.51	0.971951	0.993559
N	jcn_only_AD	MAPKAPK2	chr1	+	chr1:206905265-206905919;chr1:206905433-206905919	chr1:206905430-206905919		chr1:206905265-206905429;chr1:206905430-206905432	chr1:206905264-206905265;chr1:206905429-206905430		1.64	0.00	2.36	1.82	0.00	6.33	2.99	2.46	1.34	3.46	2.68	3.91	1.75	0.00	2.94	1.92	3.09	3.92	9.09	3.51	2.56	1.26	3.54	3.01	NA	3.30	2.13	2.48	3.95	3.37	4.65	4.79	0.00	1.23	2.25	2.96	1.75	2.88	1.13	0.927355	0.960930
K	alternative_donor	SF1,SIGIRR	chr11	-	chr11:406060-406348	chr11:406060-406141		chr11:406142-406348	chr11:406348-406349		13.79	8.40	4.35	5.26	5.08	2.22	4.88	21.43	0.00	0.00	0.00	0.00	7.50	4.76	0.00	0.00	6.45	0.00	10.47	7.14	8.57	0.00	3.12	0.00	3.76	8.33	7.14	0.00	8.16	9.09	9.09	10.00	9.21	NA	12.50	7.69	7.95	8.71	0.76	0.246720	0.615567
K	intron_retention		chr19	-	chr19:58858396-58858718				chr19:58858395-58858396;chr19:58858718-58858719		5.26	0.00	20.00	0.00	2.52	1.75	0.00	0.00	0.00	0.00	2.27	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.48	6.67	8.70	0.00	1.45	0.00	5.26	8.00	4.38	2.86	5.13	0.00	0.00	5.26	5.26	0.609605	1.000000
N	cassette	SSBP3	chr1	-	chr1:54706633-54707836	chr1:54706633-54707146;chr1:54707183-54707836		chr1:54707147-54707182			91.67	89.47	90.12	NA	84.21	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	NA	NA	100.00	95.83	100.00	97.62	NA	90.91	79.07	NA	100.00	100.00	93.33	100.00	100.00	0.00	0.809792	0.936947
K	intron_retention	PYGB	chr20	+	chr20:25276307-25277005				chr20:25276306-25276307;chr20:25277005-25277006		15.79	6.67	3.23	NA	15.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	NA	7.14	17.50	0.00	0.00	8.33	0.00	7.69	16.67	NA	NA	0.00	0.00	0.00	3.70	0.00	0.00	6.25	6.25	0.527012	1.000000
N	cassette	C17orf62	chr17	-	chr17:80403837-80407045;chr17:80403837-80408575;chr17:80404573-80408575;chr17:80404569-80408575;chr17:80404573-80407045	chr17:80403837-80405455,chr17:80404569-80405455,chr17:80404573-80405455;chr17:80405498-80408575,chr17:80405498-80407045		chr17:80405456-80405497			65.93	68.35	65.61	NA	85.71	NA	86.81	88.07	83.55	93.10	83.58	95.00	89.57	90.12	90.83	93.10	88.57	90.32	70.00	68.63	70.69	NA	86.36	92.59	68.00	74.07	77.36	95.45	92.86	94.59	72.00	64.60	69.57	84.21	87.18	92.75	69.78	73.03	3.25	0.855733	0.951375
N	alternative_donor	TCF25	chr16	+	chr16:89976760-89976998;chr16:89975516-89976998;chr16:89975492-89976998;chr16:89976334-89976998	chr16:89976765-89976998		chr16:89975492-89975515;chr16:89975516-89976333;chr16:89976334-89976759;chr16:89976760-89976764	chr16:89975491-89975492;chr16:89975515-89975516;chr16:89976333-89976334;chr16:89976759-89976760		21.43	3.45	20.00	5.56	15.00	4.35	NA	NA	NA	NA	NA	NA	NA	NA	10.00	10.00	NA	NA	5.56	9.09	5.00	NA	28.57	NA	10.00	8.33	5.88	NA	13.33	21.43	18.18	10.00	17.65	12.50	18.18	13.04	7.78	13.63	5.86	0.304651	0.650093
K	intron_retention		chr20	-	chr20:43251720-43252842				chr20:43251719-43251720;chr20:43252842-43252843		3.45	12.12	3.64	1.71	3.57	2.48	0.00	0.00	0.00	0.27	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.00	1.28	0.00	1.04	2.83	1.19	15.38	0.57	3.28	0.58	1.30	0.59	1.58	2.86	1.79	1.24	1.95	0.82	0.90	0.93	0.03	0.624338	1.000000
N	cassette	SIGLEC1	chr20	-	chr20:3678781-3683843;chr20:3680107-3683843	chr20:3678781-3681988,chr20:3680107-3681988;chr20:3682289-3683843		chr20:3681989-3682288			100.00	100.00	94.29	NA	NA	NA	95.52	95.31	95.91	96.77	95.04	93.39	98.63	99.56	99.79	98.57	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	95.77	98.31	100.00	100.00	100.00	93.75	97.87	NA	96.55	100.00	99.31	99.31	97.66	-1.65	0.483876	0.773418
K	jcn_only_AA	RAB8A,ZNF493	chr19	+	chr19:16238902-16240383	chr19:16238902-16240363		chr19:16240364-16240383	chr19:16240383-16240384		98.20	100.00	96.73	100.00	100.00	NA	100.00	99.15	100.00	99.31	99.48	98.41	99.38	99.57	98.86	98.79	99.53	98.62	NA	96.61	100.00	94.34	97.27	98.39	100.00	100.00	98.99	98.46	98.73	98.61	98.31	97.69	NA	98.00	98.95	99.51	100.00	98.73	-1.27	0.060267	0.663989
N	alternative_acceptor	LINC00667,SNRPD1	chr18	+	chr18:19202763-19203835;chr18:19202763-19203831	chr18:19202763-19203708		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		95.24	78.95	92.59	89.52	87.85	88.43	100.00	100.00	100.00	83.18	90.54	82.35	87.50	100.00	87.50	93.08	87.78	90.00	81.58	100.00	84.13	94.29	89.74	100.00	76.47	NA	81.82	100.00	91.30	100.00	100.00	92.00	84.42	100.00	90.77	100.00	83.00	100.00	17.00	0.007747	0.432575
N	jcn_only_AD		chr1	-	chr1:54394114-54395748	chr1:54394114-54395711		chr1:54395712-54395748	chr1:54395748-54395749		95.92	100.00	100.00	100.00	95.92	100.00	100.00	94.59	100.00	97.06	95.65	100.00	97.67	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	87.50	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	97.37	100.00	96.88	100.00	100.00	98.08	-1.92	0.259567	0.657607
K	alternative_acceptor	NXF1	chr11	-	chr11:62563815-62563931	chr11:62563818-62563931		chr11:62563815-62563817	chr11:62563814-62563815		97.50	94.59	98.55	91.30	96.55	100.00	100.00	90.62	94.44	92.86	100.00	100.00	94.12	100.00	90.91	91.30	94.12	95.24	100.00	95.24	96.43	92.16	94.83	98.39	100.00	97.50	95.31	94.59	96.55	94.37	97.06	96.05	90.48	95.38	94.34	98.02	97.30	97.28	-0.02	0.921974	0.978996
N	jcn_only_AA	ZSWIM8	chr10	+	chr10:75557364-75557538;chr10:75557364-75557587	chr10:75557364-75557693		chr10:75557539-75557587;chr10:75557588-75557693	chr10:75557587-75557588;chr10:75557693-75557694		0.00	0.00	2.38	NA	NA	NA	0.00	9.52	0.00	6.90	4.17	0.00	0.00	14.29	0.00	6.45	0.00	0.00	NA	7.50	NA	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	NA	14.29	5.36	NA	6.38	8.57	0.00	0.00	8.51	8.51	0.139279	0.663989
N	jcn_only_AA	IFT81	chr12	+	chr12:121001747-121013433	chr12:121001747-121002874					98.78	96.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.82	100.00	94.44	100.00	100.00	100.00	100.00	99.41	-0.59	0.545616	0.781296
K	intron_retention	RPS11	chr19	+	chr19:50000540-50000837				chr19:50000539-50000540;chr19:50000837-50000838		52.40	57.14	50.50	80.31	76.43	80.44	53.78	46.63	53.20	67.56	68.97	71.10	52.38	52.51	47.77	53.57	66.56	69.50	85.00	87.10	81.90	94.19	93.05	90.85	58.39	49.32	51.79	92.65	91.61	90.85	84.09	83.83	82.98	81.43	87.90	82.14	57.77	52.45	-5.31	0.754561	1.000000
N	mutually_exclusive	CARD19	chr9	+	chr9:95870099-95874160,chr9:95874221-95874499	chr9:95870099-95872849,chr9:95873004-95874499	chr9:95874161-95874220	chr9:95872850-95873003			100.00	100.00	100.00	NA	92.31	NA	NA	NA	NA	NA	84.62	NA	NA	NA	100.00	NA	83.33	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	91.67	NA	100.00	100.00	90.48	NA	88.24	80.00	100.00	100.00	0.00	0.391002	0.510003
N	alternative_last_exon	MAX	chr14	-	chr14:65528721-65560425,chr14:65537088-65560425;chr14:65473003-65560425;chr14:65543382-65560425,chr14:65544755-65560425	chr14:65551018-65560425	chr14:65472892-65473002;chr14:65541920-65543381	chr14:65550462-65551017			11.69	20.41	8.89	28.57	18.37	34.04	8.96	12.12	6.35	8.96	9.30	12.00	6.78	11.11	7.14	12.22	7.78	9.84	17.14	14.55	14.71	15.38	8.70	8.00	4.55	5.08	8.57	13.04	9.80	14.67	17.86	14.89	16.22	12.07	8.70	11.69	12.59	11.90	-0.69	0.932210	0.970324
N	jcn_only_AA	UBA7	chr3	-	chr3:49845361-49845452	chr3:49845384-49845452		chr3:49845361-49845383	chr3:49845360-49845361		10.61	0.00	14.29	NA	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.49	2.22	NA	0.00	0.00	0.00	7.29	0.00	0.00	0.00	1.98	11.11	5.88	18.75	0.00	0.00	6.00	0.00	6.39	6.39	0.498592	0.753081
K	cassette	SLC26A11	chr17	+	chr17:78210903-78211320	chr17:78210903-78211106;chr17:78211239-78211320		chr17:78211107-78211238			0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	9.52	0.00	0.00	1.54	0.00	0.00	4.17	0.00	0.00	0.00	0.00	2.94	11.11	0.00	2.67	0.00	1.28	0.00	2.94	2.94	0.130389	0.709176
K	jcn_only_AD	TANGO2	chr22	+	chr22:20049205-20050860;chr22:20049230-20050860	chr22:20049207-20050860		chr22:20049205-20049206;chr22:20049207-20049229	chr22:20049204-20049205;chr22:20049206-20049207		100.00	68.75	90.00	NA	NA	NA	92.00	85.71	78.26	80.00	80.43	NA	83.61	88.89	84.62	95.00	94.55	100.00	NA	NA	NA	NA	85.71	NA	50.00	88.89	NA	NA	77.78	NA	81.82	90.48	NA	100.00	100.00	NA	76.18	88.89	12.71	0.192683	0.657607
N	alternative_acceptor	TGOLN2	chr2	-	chr2:85549856-85552037;chr2:85549794-85552037;chr2:85545847-85552037	chr2:85549865-85552037		chr2:85545847-85549793;chr2:85549794-85549855;chr2:85549856-85549864	chr2:85545846-85545847;chr2:85549793-85549794;chr2:85549855-85549856		97.14	97.14	97.91	100.00	92.45	100.00	98.62	97.94	96.09	96.62	97.51	96.37	97.98	93.59	95.58	96.45	97.87	98.63	100.00	96.46	95.12	93.94	91.67	91.09	100.00	97.44	94.20	93.44	96.55	96.43	92.73	96.33	100.00	97.33	95.86	94.88	99.31	96.80	-2.51	0.017187	0.508745
K	cassette	ARHGEF1	chr19	+	chr19:42409189-42409911	chr19:42409189-42409326;chr19:42409414-42409911		chr19:42409327-42409413			98.95	98.10	100.00	97.37	95.96	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	98.31	100.00	97.87	100.00	95.60	96.67	96.95	98.81	98.96	100.00	98.63	100.00	100.00	99.08	98.54	96.36	96.47	97.44	98.43	100.00	1.57	0.110067	0.708559
K	alternative_acceptor	RNF135	chr17	+	chr17:29324350-29325679	chr17:29324350-29324474		chr17:29324475-29325679	chr17:29325679-29325680		3.12	1.79	4.35	NA	1.09	NA	0.00	2.99	1.92	0.00	1.00	NA	0.85	2.86	1.92	0.00	0.00	NA	1.89	4.55	4.55	NA	2.15	NA	1.67	7.02	4.00	0.00	2.35	NA	7.27	6.78	0.00	2.86	2.78	5.88	1.26	3.83	2.58	0.005700	0.405868
K	intron_retention	LYPLA2	chr1	+	chr1:24119530-24119640				chr1:24119529-24119530;chr1:24119640-24119641		2.50	0.00	5.88	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	4.44	0.00	0.00	3.45	0.00	NA	3.28	3.03	0.00	1.54	0.00	0.00	2.63	0.00	3.23	0.00	2.86	0.00	2.25	2.25	0.418996	1.000000
N	alternative_donor	CLN3,GGA2,RP11-435I10.4	chr16	-	chr16:28493867-28493946	chr16:28493867-28493928		chr16:28493929-28493946	chr16:28493946-28493947		0.00	5.41	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	3.12	0.00	0.00	0.00	0.00	2.22	0.00	1.96	0.00	1.92	0.00	0.00	3.17	0.00	0.00	0.00	0.381829	0.657675
N	jcn_only_AA		chr15	+	chr15:63419889-63433199;chr15:63419889-63421687	chr15:63419889-63421683		chr15:63421684-63421687;chr15:63421688-63433199	chr15:63421687-63421688;chr15:63433199-63433200		97.25	100.00	96.94	100.00	100.00	100.00	96.40	97.06	96.12	97.35	97.85	96.80	96.20	97.35	94.87	96.76	95.65	98.24	NA	95.29	93.94	98.06	95.56	97.80	NA	98.95	95.16	98.00	100.00	98.80	94.81	96.59	100.00	97.70	97.44	97.67	98.20	97.16	-1.05	0.319129	0.663989
K	intron_retention	MAP3K11	chr11	-	chr11:65375288-65375392				chr11:65375287-65375288;chr11:65375392-65375393		8.89	7.69	6.84	0.00	9.38	NA	0.00	1.45	0.00	0.00	1.32	1.92	0.00	2.06	2.74	1.23	2.74	2.50	14.29	8.05	6.00	0.00	8.11	7.14	10.87	6.76	7.62	4.00	5.36	9.09	12.73	11.93	7.14	5.13	7.58	6.25	7.42	7.41	-0.01	0.952789	1.000000
K	intron_retention	PYCARD	chr16	-	chr16:31213163-31213737				chr16:31213162-31213163;chr16:31213737-31213738		0.00	3.45	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	3.28	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	5.00	NA	NA	0.00	3.33	NA	0.00	NA	1.64	0.00	-1.64	0.414286	1.000000
K	alternative_acceptor	QARS	chr3	-	chr3:49140843-49141063	chr3:49140865-49141063		chr3:49140843-49140864	chr3:49140842-49140843		4.17	0.00	5.88	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	1.79	0.00	NA	4.00	NA	NA	0.00	0.00	17.65	8.00	6.45	0.00	0.00	NA	0.00	6.06	NA	0.00	2.44	3.23	0.00	2.00	2.00	0.730648	0.900154
N	alternative_acceptor	FGD2	chr6	+	chr6:36990147-36992992;chr6:36990147-36990971;chr6:36990147-36990964;chr6:36990147-36993567	chr6:36990147-36992548		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		5.67	0.00	NA	NA	0.00	NA	2.56	2.69	0.00	0.00	0.00	3.57	1.54	3.07	1.72	4.17	0.00	1.75	0.00	7.92	NA	NA	0.00	2.27	0.00	4.17	NA	3.12	0.00	1.59	2.70	0.00	0.00	0.00	0.00	3.88	0.00	3.62	3.62	0.005478	0.405868
K	intron_retention	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481025-7481144				chr17:7481024-7481025;chr17:7481144-7481145		2.58	1.50	3.05	1.04	1.50	0.68	0.44	0.35	0.62	0.28	0.32	0.00	0.48	0.33	0.73	0.47	0.15	0.34	1.37	2.76	1.51	1.81	2.16	2.00	0.85	1.67	2.21	1.07	1.80	1.27	4.02	5.49	2.06	1.98	2.13	1.79	1.11	2.12	1.01	0.464013	1.000000
K	alternative_donor	SMDT1	chr22	+	chr22:42475910-42477928	chr22:42475959-42477928		chr22:42475910-42475958	chr22:42475909-42475910		100.00	100.00	100.00	93.94	96.92	91.67	92.45	100.00	100.00	100.00	96.15	92.59	95.65	88.89	91.30	98.31	100.00	93.55	96.49	100.00	94.29	95.24	93.33	100.00	89.74	NA	100.00	100.00	100.00	97.14	91.67	92.86	93.75	94.12	96.97	97.62	94.70	100.00	5.30	0.627948	0.830571
N	cassette	ITFG1	chr16	-	chr16:47252858-47292542	chr16:47252858-47271875;chr16:47271920-47292542		chr16:47271876-47271919			100.00	100.00	100.00	NA	100.00	NA	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.627756	0.864183
N	alternative_acceptor	PPRC1,ZFYVE27	chr10	+	chr10:99517481-99518784;chr10:99517481-99518992	chr10:99517481-99517624		chr10:99517625-99518784;chr10:99518785-99518992	chr10:99518784-99518785;chr10:99518992-99518993		3.03	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	5.00	NA	9.09	0.00	0.00	0.00	0.00	NA	NA	5.26	10.00	0.00	0.00	6.25	0.00	5.26	3.03	NA	0.00	NA	5.88	5.26	NA	4.35	4.00	3.45	0.00	4.14	4.14	0.719658	0.894796
K	intron_retention	FMNL1	chr17	+	chr17:43323972-43324233				chr17:43323971-43323972;chr17:43324233-43324234		62.22	93.18	75.81	88.24	80.49	68.75	NA	NA	NA	NA	NA	NA	NA	NA	66.67	NA	46.67	NA	72.73	55.56	75.93	78.57	87.50	NA	100.00	72.09	88.37	90.91	88.00	NA	61.54	70.27	74.29	78.95	85.19	72.00	83.74	61.88	-21.86	0.092560	1.000000
K	intron_retention		chr1	+	chr1:160326545-160326830				chr1:160326544-160326545;chr1:160326830-160326831		13.43	9.52	17.65	NA	11.54	NA	0.00	1.66	0.00	0.00	0.64	1.22	0.00	1.30	0.65	1.35	0.79	0.00	18.18	18.82	9.30	19.23	16.95	14.81	NA	7.48	12.50	6.67	6.76	10.87	22.86	20.15	NA	17.54	11.59	16.30	4.76	10.46	5.70	0.787250	1.000000
N	alternative_acceptor		chr11	+	chr11:117864126-117864402;chr11:117864126-117864476	chr11:117864126-117864713		chr11:117864403-117864476;chr11:117864477-117864713	chr11:117864476-117864477;chr11:117864713-117864714		99.48	86.96	98.58	NA	91.67	NA	100.00	99.84	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.55	90.91	100.00	98.55	99.20	96.43	98.96	98.98	100.00	100.00	100.00	99.08	98.54	40.00	99.46	99.18	99.30	96.43	99.52	3.08	0.264580	0.709013
K	intron_retention	ATP13A2	chr1	-	chr1:17313128-17313299				chr1:17313127-17313128;chr1:17313299-17313300		5.41	7.41	0.00	NA	7.69	NA	0.00	1.19	0.00	NA	0.00	NA	0.00	1.74	0.00	NA	0.00	NA	11.54	6.67	5.88	NA	5.88	NA	8.33	4.38	6.67	NA	6.67	NA	5.71	NA	6.25	NA	0.00	NA	6.83	4.89	-1.94	0.865636	1.000000
K	cassette	NQO1	chr16	-	chr16:69745185-69752025;chr16:69747033-69752025	chr16:69745185-69748866,chr16:69747033-69748866;chr16:69748981-69752025		chr16:69748867-69748980			92.31	84.76	96.15	89.00	92.00	83.87	93.44	96.15	91.18	92.86	94.25	89.19	78.89	78.43	71.93	84.34	83.92	83.12	87.06	100.00	88.76	95.17	91.13	91.06	82.14	83.33	100.00	92.93	93.62	91.04	86.15	86.67	84.62	90.70	91.82	90.22	84.69	89.23	4.54	0.306963	0.709176
K	intron_retention	RPL8	chr8	-	chr8:146016693-146017234				chr8:146016692-146016693;chr8:146017234-146017235		94.37	96.95	95.71	98.10	97.11	96.51	95.05	97.56	95.65	97.12	92.91	92.95	96.19	100.00	100.00	96.39	93.43	93.33	95.92	90.79	94.79	91.22	95.28	96.97	95.51	92.86	100.00	96.73	96.14	95.98	96.74	95.20	95.56	97.69	97.66	97.78	95.74	95.56	-0.19	0.989814	1.000000
N	alternative_donor	PIK3R5	chr17	-	chr17:8809055-8812390	chr17:8809055-8809720		chr17:8809721-8812390	chr17:8812390-8812391		0.00	5.26	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.18	0.64	0.00	2.63	0.00	-2.63	0.182675	0.563271
K	alternative_last_exon	STX4	chr16	+	chr16:31051140-31051239,chr16:31051140-31051248;chr16:31051140-31053211	chr16:31051140-31051232	chr16:31053212-31053348	chr16:31051233-31051489			97.74	99.23	98.96	99.58	99.46	99.06	100.00	97.62	98.63	100.00	100.00	100.00	98.18	98.57	98.57	99.25	98.68	100.00	98.08	97.14	97.93	97.09	97.73	98.71	98.62	96.36	96.94	97.30	95.94	97.73	93.64	97.79	96.12	98.33	97.45	97.29	98.40	97.38	-1.02	0.118208	0.338256
K	intron_retention	PNKP	chr19	-	chr19:50365363-50365441				chr19:50365362-50365363;chr19:50365441-50365442		3.45	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	5.00	0.00	NA	4.35	NA	0.00	0.00	3.45	NA	0.00	0.00	0.00	3.23	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.852307	1.000000
K	intron_retention		chr6	-	chr6:33384747-33384873				chr6:33384746-33384747;chr6:33384873-33384874		0.00	1.92	4.00	0.00	1.17	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	1.75	4.44	0.89	0.00	0.77	0.00	2.27	0.00	0.00	0.00	7.41	10.34	2.37	0.00	2.70	0.00	1.06	0.00	-1.06	0.513183	1.000000
N	alternative_acceptor	SRSF11	chr1	+	chr1:70716187-70716293;chr1:70716187-70716262	chr1:70716187-70716290		chr1:70716263-70716290;chr1:70716291-70716293	chr1:70716290-70716291;chr1:70716293-70716294		37.14	33.33	33.33	50.00	50.00	NA	47.83	53.66	41.27	53.66	46.43	46.67	35.09	42.86	45.33	51.52	50.00	56.14	NA	37.50	35.00	40.32	36.36	42.19	30.77	51.72	43.86	52.50	45.24	51.43	36.59	38.75	NA	41.05	39.68	38.93	34.21	40.18	5.97	0.231186	0.684127
K	intron_retention		chr1	+	chr1:113241101-113241336				chr1:113241100-113241101;chr1:113241336-113241337		15.75	3.45	18.37	NA	12.50	9.68	0.00	6.34	3.33	NA	5.00	10.34	3.57	4.64	6.35	9.52	0.00	10.34	0.00	9.46	7.69	NA	10.00	20.93	13.33	17.27	13.64	20.83	20.00	13.33	11.92	14.29	NA	25.00	9.52	26.21	3.45	10.69	7.24	0.429819	1.000000
N	jcn_only_AA	LYL1	chr19	-	chr19:13213253-13213344;chr19:13211863-13213344	chr19:13212010-13213344		chr19:13211863-13212009;chr19:13212010-13213252	chr19:13211862-13211863;chr19:13212009-13212010		92.00	96.20	83.33	NA	90.00	NA	78.72	92.31	NA	NA	82.05	NA	92.00	89.47	NA	NA	90.91	NA	87.88	80.00	80.00	NA	93.18	NA	93.75	100.00	93.75	NA	81.58	NA	NA	82.35	83.72	NA	95.45	NA	89.94	92.00	2.06	0.638595	0.838192
N	alternative_acceptor	TMEM176A	chr7	+	chr7:150500545-150500680;chr7:150500545-150500707;chr7:150500545-150500811	chr7:150500545-150500750		chr7:150500681-150500707;chr7:150500708-150500750;chr7:150500751-150500811	chr7:150500707-150500708;chr7:150500750-150500751;chr7:150500811-150500812		0.00	5.88	0.00	NA	NA	NA	1.80	2.86	1.20	0.00	3.17	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.21	1.70	1.71	1.38	0.00	0.00	0.79	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.593432	0.844088
K	cassette	HSD17B10	chrX	-	chrX:53458543-53458935	chrX:53458543-53458745;chrX:53458855-53458935		chrX:53458746-53458854		chrX:53458211-53458542;chrX:53458936-53459064	80.95	83.87	86.96	91.43	92.41	93.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	87.83	85.71	94.64	89.74	90.62	100.00	90.74	NA	88.46	92.86	100.00	95.45	80.00	76.67	81.05	94.44	90.57	92.45	89.28	85.71	-3.58	0.827169	0.942501
N	cassette	RP11-196G11.1,VKORC1	chr16	-	chr16:31102664-31105877;chr16:31099148-31105877	chr16:31102664-31104632,chr16:31099148-31104632;chr16:31104743-31105877		chr16:31104633-31104742			85.57	80.54	75.56	78.33	80.36	80.00	92.86	91.57	93.07	92.41	91.82	95.83	89.02	98.04	87.88	91.15	90.79	93.90	83.48	90.91	83.49	90.79	90.35	96.10	75.00	95.35	82.00	91.04	89.09	93.90	82.61	76.67	76.56	85.56	86.17	88.28	82.01	91.24	9.23	0.063849	0.621473
K	intron_retention	TSPAN33	chr7	+	chr7:128807402-128807613				chr7:128807401-128807402;chr7:128807613-128807614		4.35	2.74	13.68	6.06	9.09	7.84	5.26	3.08	5.97	8.21	2.33	4.31	4.05	3.77	7.69	10.11	8.77	3.53	12.50	17.14	6.19	6.25	12.28	13.89	0.00	10.53	12.64	9.09	9.52	8.06	7.50	10.14	0.00	0.00	14.29	14.17	3.40	5.92	2.53	0.428777	1.000000
K	intron_retention		chr20	-	chr20:3672850-3673167				chr20:3672849-3672850;chr20:3673167-3673168		4.95	8.16	2.63	10.00	0.00	4.76	0.00	0.57	0.18	0.00	0.00	0.94	0.76	0.80	1.58	3.70	0.00	2.44	7.69	3.87	0.00	4.76	0.00	5.77	7.69	3.02	2.02	8.33	3.08	2.70	1.72	3.66	0.00	11.11	0.00	6.69	4.23	2.37	-1.86	0.613526	1.000000
K	jcn_only_AD	LENG8	chr19	+	chr19:54960489-54962466;chr19:54960485-54962466	chr19:54960923-54962466		chr19:54960485-54960488;chr19:54960489-54960922	chr19:54960484-54960485;chr19:54960488-54960489		7.14	0.00	5.77	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.57	6.82	2.38	6.90	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.180158	0.657607
N	jcn_only_AA	EPB41L3	chr18	-	chr18:5419931-5423376;chr18:5419925-5423376	chr18:5419877-5423376		chr18:5419877-5419924;chr18:5419925-5419930	chr18:5419876-5419877;chr18:5419924-5419925		7.48	0.00	4.42	0.00	10.00	NA	8.67	4.99	4.26	7.24	8.70	6.70	5.05	5.13	6.95	8.53	5.26	6.52	NA	5.09	0.00	6.76	3.62	4.96	0.00	4.51	4.97	7.81	6.17	4.08	6.67	5.78	NA	7.69	5.41	6.61	2.52	5.11	2.58	0.375442	0.663989
K	alternative_acceptor	DGCR14	chr22	-	chr22:19125831-19126671	chr22:19125993-19126671		chr22:19125831-19125992	chr22:19125830-19125831		6.25	16.67	9.09	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	11.76	6.25	0.00	5.26	NA	0.00	9.09	NA	0.00	0.00	9.09	5.56	0.00	3.85	0.00	6.45	0.00	3.12	3.12	0.916949	0.976406
K	alternative_last_exon	BTN2A1	chr6	+	chr6:26466317-26468226,chr6:26466317-26468525,chr6:26466317-26476388;chr6:26466317-26476349	chr6:26466317-26468175,chr6:26466317-26467946	chr6:26476350-26476849	chr6:26468176-26469865			99.15	87.32	97.79	93.10	91.30	96.77	95.83	100.00	98.90	100.00	100.00	96.30	97.22	100.00	100.00	96.08	95.74	100.00	91.67	100.00	97.87	100.00	98.36	96.49	73.68	99.04	98.32	98.33	94.83	98.88	96.46	98.09	89.36	98.51	98.39	99.12	90.52	99.58	9.06	0.034466	0.223089
K	jcn_only_AA	HGS	chr17	+	chr17:79663560-79669028	chr17:79663560-79663636		chr17:79663637-79669028	chr17:79669028-79669029		88.71	60.29	94.00	70.83	83.33	24.44	94.12	96.20	96.15	100.00	93.88	97.37	96.00	100.00	95.79	99.25	100.00	96.77	32.08	90.11	68.42	87.50	88.43	93.48	35.71	93.06	91.43	91.35	89.90	88.17	84.11	88.41	38.36	93.81	92.41	100.00	49.33	91.59	42.26	0.041001	0.663989
K	intron_retention		chr22	-	chr22:50943583-50943657				chr22:50943582-50943583;chr22:50943657-50943658		5.56	8.57	13.04	9.09	11.54	NA	0.00	0.00	1.67	0.00	0.00	0.00	0.00	1.15	2.00	0.00	0.00	0.00	7.14	9.43	9.38	12.00	13.64	9.68	9.09	8.82	9.76	7.14	6.98	3.33	12.82	16.13	7.14	10.00	8.11	5.88	7.14	7.19	0.05	0.996318	1.000000
N	alternative_acceptor	PHC2	chr1	-	chr1:33790621-33794470;chr1:33793054-33794470;chr1:33791751-33794470	chr1:33793029-33794470		chr1:33790621-33791750;chr1:33791751-33793028;chr1:33793029-33793053	chr1:33790620-33790621;chr1:33791750-33791751;chr1:33793028-33793029		4.19	0.00	8.23	0.00	0.00	NA	0.00	1.30	1.06	1.27	1.32	0.00	1.33	1.06	1.54	0.00	0.60	0.00	0.00	4.40	0.00	3.33	4.14	4.35	NA	5.13	5.78	2.70	1.82	0.00	2.94	3.85	0.00	3.08	3.67	6.25	0.00	3.57	3.57	0.006901	0.405868
K	alternative_acceptor	LTBR	chr12	+	chr12:6493851-6494202	chr12:6493851-6494187		chr12:6494188-6494202	chr12:6494202-6494203		81.25	81.25	82.35	NA	90.91	NA	85.71	84.44	87.69	76.09	80.00	93.33	85.14	86.08	88.89	83.33	84.78	80.00	NA	80.43	88.24	80.95	89.36	85.00	100.00	82.76	89.09	76.19	79.31	75.00	91.30	81.48	NA	60.71	75.68	77.50	85.42	83.60	-1.83	0.456162	0.760973
N	coord_cassette	STAC3	chr12	-	chr12:57638749-57642488	chr12:57638749-57640586;chr12:57640685-57641908;chr12:57641982-57642488		chr12:57640587-57640684;chr12:57641909-57641981			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	NA	100.00	100.00	90.00	100.00	100.00	100.00	97.06	94.44	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	0.00	0.226775	0.643829
N	jcn_only_AD	ZNF330	chr4	+	chr4:142142209-142143519;chr4:142142241-142143519;chr4:142118096-142143519;chr4:142142263-142143519;chr4:142142171-142143519	chr4:142142232-142143519		chr4:142118096-142142170;chr4:142142171-142142208;chr4:142142209-142142231;chr4:142142232-142142240;chr4:142142241-142142262	chr4:142118095-142118096;chr4:142142170-142142171;chr4:142142208-142142209;chr4:142142231-142142232;chr4:142142240-142142241		0.00	0.00	0.00	8.33	0.00	12.50	6.90	0.00	0.00	3.75	4.95	0.00	3.00	0.00	0.00	5.33	7.37	2.86	7.69	0.00	7.14	7.69	1.85	9.52	0.00	5.56	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	3.23	1.50	0.00	-1.50	0.278528	0.657607
N	alternative_last_exon	CTC-429P9.4,CTD-3222D19.2,MED26	chr19	-	chr19:16682394-16689145	chr19:16688494-16689145	chr19:16682323-16682393	chr19:16685730-16688493			100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	91.67	NA	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.541211
N	jcn_only_AA	C14orf119	chr14	+	chr14:23564829-23566850;chr14:23564829-23566978	chr14:23564829-23566866		chr14:23566851-23566866;chr14:23566867-23566978	chr14:23566866-23566867;chr14:23566978-23566979		100.00	100.00	100.00	100.00	100.00	NA	100.00	98.57	100.00	97.01	100.00	100.00	98.04	100.00	100.00	98.72	100.00	100.00	100.00	98.78	95.65	100.00	96.80	91.84	100.00	100.00	100.00	95.65	98.02	100.00	96.92	100.00	100.00	98.33	95.52	98.11	100.00	99.39	-0.61	0.322470	0.663989
K	cassette	DDAH2	chr6	-	chr6:31696070-31696422	chr6:31696070-31696227;chr6:31696302-31696422		chr6:31696228-31696301			99.03	95.06	90.00	100.00	93.27	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.35	100.00	100.00	100.00	100.00	100.00	97.03	100.00	100.00	96.00	92.31	100.00	96.63	90.54	100.00	97.46	100.00	97.10	96.08	97.37	96.61	95.77	100.00	100.00	98.06	-1.94	0.608870	0.853757
N	jcn_only_AD	TBC1D2,TSC1	chr9	-	chr9:100973126-100975389	chr9:100973126-100973388		chr9:100973389-100975389	chr9:100975389-100975390		0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.27	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	DDX3X	chrX	+	chrX:41206705-41206892				chrX:41206704-41206705;chrX:41206892-41206893		5.03	0.00	4.43	0.00	0.00	2.22	0.00	0.58	0.00	0.00	0.00	0.34	0.00	0.00	0.71	0.40	0.00	0.00	0.00	4.31	1.49	5.32	2.88	5.45	0.00	3.05	4.03	2.63	0.00	0.97	3.04	4.93	2.13	3.78	4.39	4.57	0.00	3.04	3.04	0.166547	1.000000
N	cassette	COMMD4	chr15	+	chr15:75631686-75632305;chr15:75631446-75632305	chr15:75631686-75632042,chr15:75631446-75632042;chr15:75632220-75632305		chr15:75632043-75632219			93.18	95.50	94.23	87.14	89.25	88.65	95.24	94.29	93.33	93.02	94.52	94.59	96.43	95.92	95.24	89.06	90.09	93.33	92.56	96.97	95.12	84.00	87.37	95.45	92.91	98.25	93.33	88.89	93.22	92.54	91.43	91.30	93.99	89.13	88.61	90.91	94.61	95.11	0.49	0.649730	0.870542
K	intron_retention	PARP4	chr13	-	chr13:25005615-25008532				chr13:25005614-25005615;chr13:25008532-25008533		2.11	1.23	7.27	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	2.56	0.00	1.64	4.76	1.28	2.56	8.33	5.10	3.33	0.00	0.00	3.08	0.00	2.99	0.00	6.25	3.57	3.09	0.61	0.00	-0.61	0.585006	1.000000
K	intron_retention		chr19	+	chr19:5667176-5667363				chr19:5667175-5667176;chr19:5667363-5667364		5.88	3.70	6.67	6.00	3.57	0.00	NA	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.75	3.12	5.26	5.26	5.88	4.55	0.00	7.69	4.26	12.50	0.00	7.14	7.58	5.00	6.78	4.00	4.55	11.63	3.70	6.73	3.03	0.493150	1.000000
N	jcn_only_AD	DENND3	chr8	+	chr8:142190954-142195237	chr8:142192587-142195237		chr8:142190954-142192586	chr8:142190953-142190954		7.69	0.00	7.69	0.00	NA	8.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	3.03	0.00	NA	0.00	0.00	NA	9.09	3.23	0.00	NA	0.00	11.76	13.73	NA	13.33	0.00	16.67	0.00	5.36	5.36	0.048415	0.500386
N	alternative_acceptor	GGA1	chr22	+	chr22:38026178-38026913;chr22:38026178-38026909	chr22:38026178-38026919		chr22:38026910-38026913;chr22:38026914-38026919	chr22:38026913-38026914;chr22:38026919-38026920		6.25	0.00	0.00	NA	0.00	NA	0.00	NA	NA	0.00	4.17	NA	6.25	0.00	NA	0.00	0.00	NA	NA	3.23	7.14	0.00	0.00	NA	NA	0.00	5.26	0.00	6.45	NA	0.00	3.45	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.873156	0.956197
K	intron_retention	CPSF3L	chr1	-	chr1:1249302-1249680				chr1:1249301-1249302;chr1:1249680-1249681		2.56	6.52	17.65	14.29	19.23	7.69	0.00	0.00	4.55	0.00	3.33	0.00	11.11	NA	6.90	6.90	6.67	0.00	17.65	8.70	3.70	13.64	26.67	25.00	21.43	10.53	17.65	9.52	16.67	11.76	24.14	15.79	9.52	23.08	15.62	15.15	10.31	8.70	-1.62	0.985458	1.000000
K	intron_retention		chr8	+	chr8:22475292-22475861				chr8:22475291-22475292;chr8:22475861-22475862		1.61	0.00	5.97	0.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	6.45	1.92	0.00	1.85	0.00	1.92	1.33	0.00	0.00	1.82	1.61	0.00	1.70	1.70	0.362622	1.000000
K	alternative_last_exon	FGFR1OP2	chr12	+	chr12:27110677-27116274	chr12:27110677-27113447	chr12:27116275-27116388	chr12:27113448-27113779			80.00	100.00	63.41	100.00	98.15	100.00	86.67	90.91	71.05	92.00	89.74	95.00	92.50	93.48	81.82	92.68	94.29	82.61	100.00	72.41	88.24	78.26	90.70	84.00	100.00	84.09	68.29	91.30	97.44	100.00	68.57	68.75	98.15	84.09	89.36	87.80	99.08	82.05	-17.03	0.013701	0.175757
N	alternative_acceptor	SUGP2	chr19	-	chr19:19102552-19104446;chr19:19102350-19104446	chr19:19101959-19104446		chr19:19101959-19102349;chr19:19102350-19102551	chr19:19101958-19101959;chr19:19102349-19102350		17.39	43.43	32.43	46.34	48.53	41.18	NA	NA	NA	NA	NA	NA	31.25	NA	25.00	NA	NA	NA	36.00	21.43	39.58	43.48	40.43	41.67	48.39	28.57	46.15	42.86	40.43	35.29	52.38	36.36	53.52	51.52	50.00	44.00	43.43	25.00	-18.43	0.218015	0.671511
N	alternative_acceptor	CCDC82	chr11	-	chr11:96086879-96092156	chr11:96091784-96092156		chr11:96086879-96091783	chr11:96086878-96086879		4.26	0.00	5.33	0.00	0.00	0.00	0.00	6.38	6.67	NA	9.09	NA	5.26	11.11	7.27	4.35	8.33	NA	0.00	3.85	0.00	4.17	2.78	2.70	0.00	7.69	4.44	4.00	0.00	0.00	1.41	2.86	0.00	4.65	2.94	6.38	0.00	5.32	5.32	0.016207	0.506009
N	cassette	CCM2	chr7	+	chr7:45078026-45109424;chr7:45078026-45112324;chr7:45078026-45108041	chr7:45078026-45104061;chr7:45104246-45109424,chr7:45104246-45112324,chr7:45104246-45108041		chr7:45104062-45104245			96.77	100.00	98.92	100.00	100.00	100.00	97.87	100.00	96.40	100.00	100.00	100.00	96.08	100.00	97.50	100.00	97.44	97.06	96.15	98.15	96.83	92.11	100.00	100.00	100.00	97.37	95.05	100.00	97.14	100.00	100.00	100.00	100.00	100.00	98.15	98.53	98.94	99.08	0.14	0.719878	0.899929
K	cassette	LILRA5	chr19	-	chr19:54823419-54823806	chr19:54823419-54823604;chr19:54823641-54823806		chr19:54823605-54823640			96.43	100.00	100.00	NA	100.00	NA	100.00	98.88	98.46	100.00	100.00	98.71	100.00	97.34	96.77	100.00	100.00	96.60	100.00	93.82	92.11	NA	81.25	89.74	NA	97.09	86.49	95.35	100.00	95.50	92.66	88.72	100.00	91.89	90.32	88.44	100.00	96.76	-3.24	0.008911	0.294923
K	intron_retention	IFT20	chr17	-	chr17:26656303-26657468				chr17:26656302-26656303;chr17:26657468-26657469		4.76	5.00	10.34	0.00	0.00	NA	0.00	0.00	4.17	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	18.18	4.76	0.00	11.43	0.00	4.88	0.00	0.00	3.57	0.00	5.88	3.70	6.45	1.25	0.00	-1.25	0.808601	1.000000
N	alternative_acceptor	DUS1L	chr17	-	chr17:80016695-80017823	chr17:80016907-80017823		chr17:80016695-80016906	chr17:80016694-80016695		3.23	6.82	4.76	5.26	7.87	5.56	0.00	0.00	0.00	0.00	1.43	0.00	1.33	0.00	2.13	0.00	0.00	0.00	5.36	3.70	4.44	6.45	4.76	14.29	4.84	0.00	9.52	0.00	3.23	4.65	16.67	5.00	4.30	5.56	2.22	4.76	4.57	1.61	-2.96	0.957257	0.990505
N	alternative_donor	ARPC2	chr2	+	chr2:219081978-219090642;chr2:219085422-219090642	chr2:219082268-219090642		chr2:219081978-219082267;chr2:219082268-219085421	chr2:219081977-219081978;chr2:219082267-219082268		91.06	96.92	89.62	90.91	96.72	NA	98.51	99.12	100.00	98.08	99.71	100.00	99.21	99.43	98.59	99.67	99.77	98.72	91.67	93.60	92.96	92.74	93.95	89.47	90.91	95.12	93.89	96.61	96.71	95.29	93.62	90.44	96.30	87.50	91.96	90.50	96.61	94.37	-2.24	0.897022	0.977754
K	intron_retention		chr1	+	chr1:36641923-36642018				chr1:36641922-36641923;chr1:36642018-36642019		61.63	77.50	69.39	76.92	87.88	NA	60.61	64.86	58.33	62.71	58.57	40.00	59.09	67.07	63.83	64.00	57.75	32.14	76.47	67.21	69.05	80.00	79.31	60.87	77.78	50.48	73.33	72.34	88.00	66.67	62.07	59.26	69.23	67.09	76.54	59.65	72.85	63.47	-9.38	0.323822	1.000000
K	intron_retention	MFSD10	chr4	-	chr4:2932878-2932953				chr4:2932877-2932878;chr4:2932953-2932954		3.33	7.27	10.00	9.76	6.38	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	4.00	0.00	5.17	6.25	7.41	8.00	0.00	0.00	3.57	0.00	4.44	0.00	6.25	0.00	6.25	13.04	0.00	0.00	2.00	0.00	-2.00	0.853982	1.000000
K	intron_retention	PIGT	chr20	+	chr20:44050224-44052855				chr20:44050223-44050224;chr20:44052855-44052856		4.17	5.00	4.48	2.86	2.68	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	0.00	5.56	6.12	6.90	1.61	7.48	1.56	13.04	1.82	0.00	2.90	1.82	1.30	4.29	6.19	9.38	3.66	5.21	1.99	5.28	3.00	-2.28	0.911209	1.000000
N	jcn_only_AA	MADD	chr11	+	chr11:47336879-47343361;chr11:47336879-47345221	chr11:47336879-47345091		chr11:47343362-47345091;chr11:47345092-47345221	chr11:47345091-47345092;chr11:47345221-47345222		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	9.09	0.00	0.93	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	MXD3	chr5	-	chr5:176730322-176730411				chr5:176730321-176730322;chr5:176730411-176730412		90.79	75.68	83.10	NA	90.91	100.00	96.00	92.98	94.34	100.00	100.00	100.00	86.36	92.86	95.24	NA	89.47	81.82	94.74	87.76	92.45	NA	88.46	84.62	100.00	89.58	86.08	100.00	95.83	92.31	90.32	87.50	82.61	83.33	100.00	85.00	90.55	90.56	0.01	0.656858	1.000000
K	intron_retention		chr16	-	chr16:4409623-4410278				chr16:4409622-4409623;chr16:4410278-4410279		4.49	16.36	11.63	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	3.28	3.23	3.12	3.26	3.70	14.75	3.37	1.79	1.92	1.03	0.00	2.70	11.11	6.25	0.00	1.67	4.05	5.98	2.99	-2.99	0.387195	1.000000
K	intron_retention	SDR39U1	chr14	-	chr14:24909615-24909988				chr14:24909614-24909615;chr14:24909988-24909989		88.68	89.09	92.98	90.00	94.12	100.00	96.97	100.00	100.00	94.74	95.00	100.00	91.67	100.00	100.00	88.46	94.12	100.00	100.00	96.88	94.44	100.00	93.62	100.00	100.00	90.62	100.00	96.55	100.00	97.73	96.15	93.55	100.00	89.29	100.00	100.00	98.48	96.52	-1.97	0.963390	1.000000
K	intron_retention	MIF4GD	chr17	-	chr17:73263712-73263826				chr17:73263711-73263712;chr17:73263826-73263827		0.00	8.00	5.00	NA	9.68	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	7.14	NA	0.00	0.00	0.00	0.00	2.13	NA	NA	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.594508	1.000000
K	alternative_last_exon	RPL24	chr3	-	chr3:101401354-101401614;chr3:101400060-101401614	chr3:101401337-101401614	chr3:101399936-101400059	chr3:101400886-101401336			93.90	96.39	96.46	97.45	97.58	97.01	99.43	100.00	99.04	95.08	98.50	96.94	98.44	95.12	99.10	97.58	99.14	95.60	96.29	98.41	96.73	97.67	98.44	98.77	95.61	100.00	96.46	98.11	98.05	97.83	93.55	93.85	94.27	97.47	97.81	98.60	96.34	96.77	0.42	0.950916	0.972989
N	alternative_acceptor	DDX3X	chrX	+	chrX:41206266-41206570;chrX:41206266-41206567	chrX:41206266-41206564		chrX:41206565-41206567;chrX:41206568-41206570	chrX:41206567-41206568;chrX:41206570-41206571		51.72	40.00	54.95	NA	NA	54.55	65.85	64.38	65.31	66.67	64.18	61.90	63.64	59.42	58.33	57.89	64.47	62.77	NA	53.49	52.38	56.76	58.06	53.42	NA	50.60	52.83	63.89	62.50	61.29	53.33	50.00	41.67	49.43	54.00	51.54	52.66	53.41	0.75	0.730730	0.900154
K	alternative_first_exon	C18orf32,RPL17-C18orf32	chr18	-	chr18:47010142-47013121;chr18:47010142-47015728;chr18:47010142-47013576,chr18:47010142-47013412;chr18:47010142-47012802	chr18:47010142-47014869	chr18:47015729-47015920;chr18:47013577-47013601;chr18:47012803-47012983	chr18:47014870-47014936			0.00	0.00	1.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	5.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.70	9.09	0.00	0.00	6.45	0.00	0.00	0.00	0.391002	0.552368
K	cassette	STYXL1	chr7	-	chr7:75625918-75633075	chr7:75625918-75630207;chr7:75630321-75633075		chr7:75630208-75630320			71.74	53.85	71.79	60.53	60.00	61.73	72.73	89.29	90.00	68.42	73.68	84.21	72.00	82.50	78.57	68.75	77.08	80.00	60.94	72.50	78.95	83.33	66.67	82.35	57.36	61.70	59.26	70.59	68.00	82.76	85.71	60.53	60.58	79.17	63.89	70.00	60.76	77.50	16.74	0.023491	0.405319
N	alternative_acceptor	CD84	chr1	-	chr1:160519770-160520727	chr1:160520637-160520727		chr1:160519770-160520636	chr1:160519769-160519770		4.55	10.71	4.35	NA	NA	0.00	0.46	0.47	0.00	0.50	0.29	0.42	1.60	0.78	1.45	0.83	0.94	0.72	NA	3.70	5.26	5.88	3.23	2.78	NA	1.54	2.86	0.00	2.63	2.44	NA	0.00	0.00	2.22	3.64	2.22	1.03	1.54	0.51	0.731501	0.900664
N	jcn_only_AA	BET1L	chr11	-	chr11:201777-205610;chr11:201226-205610;chr11:205470-205610	chr11:201742-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.18	0.00	17.65	0.00	20.00	0.00	0.00	0.00	0.00	3.57	0.00	5.88	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.633823	0.838192
N	cassette	CTSZ	chr20	-	chr20:57570815-57572657;chr20:57569277-57572657	chr20:57569277-57571693,chr20:57570815-57571693;chr20:57571857-57572657		chr20:57571694-57571856			76.51	74.26	79.12	93.27	89.18	91.62	98.47	98.50	98.21	99.11	99.15	99.55	99.77	99.93	99.73	99.77	100.00	99.87	88.24	90.22	98.83	94.94	93.91	95.92	86.42	96.55	93.99	98.11	98.00	98.40	91.72	87.21	87.79	95.59	94.55	95.94	88.02	94.13	6.12	0.564260	0.825264
N	cassette	CD151	chr11	+	chr11:833023-836062;chr11:833027-836062	chr11:833023-834529,chr11:833027-834529;chr11:834592-836062		chr11:834530-834591			64.86	72.34	61.40	69.23	57.14	NA	72.60	75.00	60.34	79.61	71.52	80.28	79.49	75.36	69.33	78.77	87.15	85.29	60.00	50.00	65.96	53.85	53.85	48.15	75.00	56.86	53.33	70.91	63.53	70.83	51.85	60.61	45.45	77.27	58.00	64.81	72.47	60.86	-11.61	0.470949	0.769093
K	jcn_only_AD	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24679975-24680620	chr14:24679975-24680616		chr14:24680617-24680620	chr14:24680620-24680621		3.00	0.53	2.97	4.41	3.55	4.35	2.38	1.52	1.92	0.00	0.00	0.00	0.00	0.00	1.87	1.49	0.00	0.00	2.48	3.81	2.15	0.00	2.73	2.17	1.69	4.88	4.96	0.00	2.25	2.97	6.93	5.36	4.24	2.94	5.31	5.81	2.04	3.41	1.37	0.245946	0.657607
N	alternative_acceptor	TRA2B	chr3	-	chr3:185639908-185641583	chr3:185639915-185641583		chr3:185639908-185639914	chr3:185639907-185639908		93.75	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.174688	0.660713
K	intron_retention	RABEP2	chr16	-	chr16:28926104-28931106				chr16:28926103-28926104;chr16:28931106-28931107		0.00	7.69	12.50	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	11.76	0.00	NA	0.00	0.00	7.69	NA	0.00	NA	0.00	0.00	11.76	NA	5.26	NA	0.00	4.76	9.09	NA	9.52	11.11	0.00	0.00	0.00	0.843385	1.000000
K	alternative_acceptor	SUPT5H	chr19	+	chr19:39936278-39936521;chr19:39936278-39936443	chr19:39936278-39936518		chr19:39936444-39936518;chr19:39936519-39936521	chr19:39936518-39936519;chr19:39936521-39936522		1.92	3.12	3.49	NA	8.33	NA	0.00	1.67	1.10	5.56	3.39	0.00	1.75	1.45	5.05	3.92	4.84	10.81	7.14	2.44	6.25	4.55	1.79	6.90	1.96	2.04	1.69	0.00	3.57	16.00	3.70	6.56	5.88	1.69	5.26	1.41	2.54	1.98	-0.56	0.374992	0.709013
K	intron_retention	HCK	chr20	+	chr20:30640290-30642018				chr20:30640289-30640290;chr20:30642018-30642019		21.21	35.29	18.97	17.65	NA	19.30	NA	5.13	0.00	0.00	0.00	9.09	0.00	1.75	4.44	5.41	0.00	5.26	14.29	10.42	9.09	20.00	16.67	28.57	NA	9.09	20.59	20.00	NA	34.29	16.00	22.58	17.65	20.00	7.14	28.57	15.97	9.75	-6.21	0.369069	1.000000
K	intron_retention	FNTA	chr8	+	chr8:42940602-42940724				chr8:42940601-42940602;chr8:42940724-42940725		87.76	100.00	100.00	100.00	100.00	100.00	84.13	100.00	100.00	100.00	100.00	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.978966	1.000000
N	alternative_acceptor		chr1	+	chr1:150482659-150482984;chr1:150482659-150482987	chr1:150482659-150483351		chr1:150482985-150482987;chr1:150482988-150483351	chr1:150482987-150482988;chr1:150483351-150483352		96.23	100.00	93.24	100.00	100.00	100.00	99.61	100.00	100.00	100.00	100.00	100.00	99.44	100.00	100.00	100.00	99.47	100.00	100.00	95.18	100.00	98.36	97.06	100.00	100.00	97.03	96.55	100.00	98.41	100.00	100.00	97.53	100.00	98.08	97.44	99.16	100.00	98.52	-1.48	0.105211	0.598353
K	alternative_acceptor	FKBP8	chr19	-	chr19:18652782-18654718	chr19:18652806-18654718		chr19:18652782-18652805	chr19:18652781-18652782		100.00	100.00	79.17	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	82.35	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	94.74	100.00	100.00	100.00	NA	100.00	100.00	84.21	100.00	100.00	100.00	100.00	100.00	0.00	0.549913	0.824249
N	alternative_acceptor	MGLL	chr3	-	chr3:127540682-127541926;chr3:127541198-127541926	chr3:127541688-127541926		chr3:127540682-127541197;chr3:127541198-127541687	chr3:127540681-127540682;chr3:127541197-127541198		4.55	10.00	8.00	0.00	0.00	4.35	1.42	2.30	5.41	2.42	1.63	4.11	3.97	4.39	2.38	3.03	1.96	3.94	NA	3.03	0.00	2.78	2.04	2.99	NA	3.95	6.06	0.90	0.97	2.83	2.50	0.00	0.00	2.34	2.40	3.49	2.70	3.49	0.79	0.871151	0.956197
K	intron_retention	NAGK	chr2	+	chr2:71300725-71302691				chr2:71300724-71300725;chr2:71302691-71302692		47.83	46.67	64.29	NA	NA	NA	35.29	40.91	NA	NA	NA	NA	36.36	20.00	NA	NA	NA	NA	7.14	57.14	0.00	NA	23.53	NA	75.00	46.43	NA	NA	30.00	23.08	NA	NA	8.33	50.00	60.00	50.00	35.83	46.43	10.60	0.386389	1.000000
N	jcn_only_AA	MITD1	chr2	-	chr2:99784176-99786012;chr2:99785896-99786012;chr2:99785934-99786012;chr2:99784311-99786012	chr2:99778132-99786012		chr2:99778132-99784175;chr2:99784176-99784310;chr2:99784311-99785895;chr2:99785896-99785933	chr2:99778131-99778132;chr2:99784175-99784176;chr2:99784310-99784311;chr2:99785895-99785896		6.25	0.00	3.77	10.53	6.56	11.11	9.09	4.55	9.52	8.33	7.69	NA	4.55	13.04	0.00	NA	8.33	NA	4.71	4.35	8.20	6.25	2.50	16.67	0.00	15.38	1.89	5.00	0.00	4.55	4.55	10.77	4.17	0.00	7.69	2.70	4.36	5.40	1.04	0.114387	0.663989
K	intron_retention	THEMIS2	chr1	+	chr1:28203240-28211805				chr1:28203239-28203240;chr1:28211805-28211806		16.84	20.29	15.92	NA	15.15	NA	5.00	14.29	5.33	NA	5.56	9.09	11.76	20.00	27.27	NA	NA	NA	13.33	13.87	9.84	NA	17.65	64.29	NA	16.03	10.58	38.89	17.24	52.38	12.50	14.29	14.29	46.15	18.52	44.83	13.33	15.16	1.83	0.432065	1.000000
K	intron_retention		chr20	-	chr20:48741717-48744511				chr20:48741716-48741717;chr20:48744511-48744512		5.00	0.00	6.45	0.00	3.57	NA	2.22	2.82	1.83	2.08	4.17	7.69	0.00	1.75	2.22	2.44	7.27	3.85	20.00	9.68	7.50	6.25	3.70	4.00	NA	1.18	2.22	0.00	6.52	0.00	4.76	3.77	6.25	0.00	5.77	6.12	2.22	3.79	1.57	0.937634	1.000000
K	intron_retention		chr15	+	chr15:77322923-77323520				chr15:77322922-77322923;chr15:77323520-77323521		5.88	0.00	10.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	1.47	NA	2.04	0.00	1.36	0.00	2.38	NA	4.76	NA	8.33	2.27	0.00	0.00	0.00	0.00	0.00	2.94	2.94	0.484113	1.000000
N	jcn_only_AA		chr17	+	chr17:16330192-16330765	chr17:16330192-16330762		chr17:16330763-16330765	chr17:16330765-16330766		97.78	NA	100.00	NA	100.00	NA	94.06	91.58	94.44	90.00	93.07	88.57	94.59	93.97	93.02	91.07	93.67	92.31	90.00	91.49	90.62	100.00	94.59	96.67	100.00	96.92	93.75	92.86	94.44	100.00	93.75	100.00	100.00	97.50	95.65	92.98	94.59	93.86	-0.73	0.523548	0.764895
N	alternative_acceptor	SIRT7	chr17	-	chr17:79872407-79872479;chr17:79872333-79872479	chr17:79872381-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		7.32	13.33	4.55	6.67	13.79	NA	0.00	0.00	0.00	0.00	0.00	NA	14.29	NA	0.00	0.00	0.00	NA	15.79	8.00	9.52	10.00	8.70	9.52	14.29	3.45	15.38	NA	12.50	0.00	11.43	11.11	22.86	10.53	13.79	14.81	14.29	7.32	-6.97	0.074407	0.585944
K	cassette	MRPS18C	chr4	+	chr4:84378112-84380892;chr4:84378112-84382125	chr4:84378112-84379498;chr4:84379583-84382125,chr4:84379583-84380892		chr4:84379499-84379582			78.57	60.76	81.36	69.44	82.81	81.08	63.64	83.33	88.89	81.08	85.71	73.33	81.03	77.94	88.52	83.33	81.67	74.19	62.75	84.21	68.54	85.19	80.70	81.48	50.00	80.23	88.89	78.57	85.71	85.11	72.00	81.54	60.34	68.42	74.14	76.27	61.75	79.40	17.65	0.008697	0.292259
N	cassette	PCK2	chr14	+	chr14:24572100-24572718;chr14:24572100-24573050	chr14:24572100-24572368;chr14:24572465-24573050,chr14:24572465-24572718		chr14:24572369-24572464			86.96	94.44	76.92	70.00	89.66	NA	92.65	91.09	93.33	81.48	85.42	87.10	89.72	87.61	86.27	82.14	76.79	83.33	89.13	85.26	88.10	NA	79.41	NA	90.00	88.52	85.00	NA	82.50	91.67	95.77	92.31	90.48	89.47	75.76	85.19	90.24	88.06	-2.18	0.316207	0.709176
N	alternative_donor	HCK	chr20	+	chr20:30640290-30642018	chr20:30640982-30642018		chr20:30640290-30640981	chr20:30640289-30640290		16.13	8.33	14.55	3.45	NA	4.17	NA	5.13	3.33	0.00	0.00	4.76	0.00	3.45	4.44	5.41	0.00	5.26	7.69	2.27	4.76	20.00	9.09	25.00	NA	3.23	12.90	7.69	NA	14.81	4.55	11.11	0.00	20.00	7.14	28.57	3.85	4.00	0.15	0.585570	0.799662
K	intron_retention	SLC2A4RG	chr20	+	chr20:62373410-62373482				chr20:62373409-62373410;chr20:62373482-62373483		7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	NA	NA	4.76	NA	0.00	0.00	6.25	0.00	0.00	NA	10.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	3.57	0.485226	1.000000
N	alternative_acceptor	PPP6R1	chr19	-	chr19:55752745-55752844	chr19:55752760-55752844		chr19:55752745-55752759	chr19:55752744-55752745		87.80	91.67	92.68	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	86.67	90.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	82.35	87.10	NA	85.71	88.24	94.44	100.00	93.90	-6.10	0.227868	0.681180
K	cassette	CCND3	chr6	-	chr6:41903846-41904972	chr6:41903846-41904296;chr6:41904434-41904972		chr6:41904297-41904433			97.85	100.00	97.71	NA	86.67	NA	96.55	97.89	100.00	100.00	100.00	93.33	99.16	97.74	97.62	87.80	100.00	92.86	NA	100.00	100.00	NA	86.67	NA	NA	100.00	95.06	NA	91.30	100.00	100.00	94.44	100.00	100.00	100.00	100.00	99.58	98.94	-0.64	0.988674	0.997001
K	intron_retention	GDI1	chrX	+	chrX:153668854-153669442				chrX:153668853-153668854;chrX:153669442-153669443		7.08	6.25	6.04	0.00	5.17	NA	1.52	0.00	0.00	0.00	1.10	0.00	2.38	0.77	1.63	0.93	2.41	0.00	10.53	5.36	4.08	4.82	6.58	5.32	NA	4.83	10.07	3.41	4.40	0.00	8.45	8.55	11.76	5.51	7.32	6.85	6.25	5.10	-1.15	0.776333	1.000000
N	alternative_acceptor	ZNF276	chr16	+	chr16:89804314-89804405;chr16:89804314-89804414;chr16:89804314-89804383	chr16:89804314-89805599		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		0.00	0.00	8.00	0.00	11.76	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	9.52	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	9.09	0.00	0.00	0.00	0.00	0.693389	0.884306
N	alternative_donor	ADAM28	chr8	+	chr8:24201098-24207376;chr8:24205893-24207376	chr8:24201102-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		3.95	3.17	5.03	5.56	4.08	NA	2.56	0.00	2.78	7.69	2.70	17.78	2.63	0.00	10.53	4.76	3.85	23.53	5.13	3.70	6.67	2.86	3.41	5.08	NA	5.00	4.79	5.88	0.00	9.52	5.36	6.04	2.22	1.82	2.78	3.12	2.63	3.83	1.20	0.902872	0.979133
N	jcn_only_AA	CFAP36	chr2	+	chr2:55764722-55771160;chr2:55764722-55771099	chr2:55764722-55771073		chr2:55771074-55771099;chr2:55771100-55771160	chr2:55771099-55771100;chr2:55771160-55771161		97.22	100.00	100.00	NA	96.77	100.00	94.74	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.40	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.688328	0.863511
K	intron_retention	CTD-3214H19.4	chr19	+	chr19:7695733-7696117				chr19:7695732-7695733;chr19:7696117-7696118		15.00	32.00	35.71	NA	23.08	38.89	NA	NA	NA	NA	NA	NA	0.00	NA	9.09	0.00	NA	NA	27.27	9.09	17.65	NA	NA	NA	16.67	7.14	20.00	NA	22.73	0.00	18.18	13.04	15.91	NA	23.08	25.00	16.67	12.04	-4.63	0.805480	1.000000
N	jcn_only_AA		chr5	+	chr5:132435345-132437483	chr5:132435345-132437450		chr5:132437451-132437483	chr5:132437483-132437484		95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.18	100.00	100.00	100.00	100.00	100.00	100.00	97.01	98.91	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.191172	0.663989
N	cassette	SIRT2	chr19	-	chr19:39370141-39371324	chr19:39370141-39370271;chr19:39370343-39371324		chr19:39370272-39370342			100.00	100.00	100.00	100.00	96.72	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	93.10	100.00	95.65	100.00	100.00	100.00	0.00	0.363217	0.709176
K	mutually_exclusive	P4HA2	chr5	-	chr5:131531174-131534013,chr5:131534074-131534571	chr5:131531174-131533898,chr5:131533965-131534571	chr5:131534014-131534073	chr5:131533899-131533964			8.33	30.00	8.33	NA	NA	NA	23.53	16.67	29.41	40.91	31.58	36.36	26.32	19.35	19.05	32.00	26.32	28.57	20.00	19.35	23.81	13.33	14.29	31.25	NA	12.50	17.24	26.67	23.08	18.75	16.67	NA	NA	26.32	11.11	16.67	24.93	16.67	-8.25	0.011655	0.078591
K	intron_retention		chr1	+	chr1:182764976-182772832				chr1:182764975-182764976;chr1:182772832-182772833		3.70	0.00	7.46	NA	0.00	NA	7.69	6.67	9.09	0.00	4.35	0.00	13.33	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	NA	3.57	5.88	NA	5.88	0.00	0.00	6.00	NA	0.00	3.17	0.00	3.85	3.63	-0.21	0.840967	1.000000
K	intron_retention	SNHG5	chr6	-	chr6:86387751-86387853				chr6:86387750-86387751;chr6:86387853-86387854		1.25	0.00	2.82	0.26	0.59	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.22	2.70	0.99	2.48	0.98	1.67	1.25	5.41	1.05	2.14	0.49	1.52	4.29	2.60	0.90	1.90	1.47	0.86	0.11	1.98	1.86	0.230017	1.000000
K	intron_retention	STX10	chr19	-	chr19:13255301-13255390				chr19:13255300-13255301;chr19:13255390-13255391		14.29	16.33	26.67	0.00	16.87	0.00	0.00	0.00	0.00	0.00	1.32	0.00	4.41	0.00	NA	3.70	0.00	0.00	16.67	17.39	14.71	NA	15.71	NA	18.00	NA	30.23	NA	11.90	12.50	25.00	27.78	17.76	6.67	20.00	0.00	16.50	14.29	-2.21	0.997851	1.000000
K	intron_retention	POLR2A	chr17	+	chr17:7406021-7406439				chr17:7406020-7406021;chr17:7406439-7406440		5.26	0.00	4.67	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	2.17	3.33	0.00	2.74	5.08	NA	0.00	NA	0.00	6.00	NA	2.63	3.03	2.63	0.00	0.00	0.00	0.474463	1.000000
N	alternative_acceptor		chr17	+	chr17:40666479-40666561;chr17:40666479-40668789	chr17:40666479-40673044		chr17:40666562-40668789;chr17:40668790-40673044	chr17:40668789-40668790;chr17:40673044-40673045		75.61	73.08	71.79	NA	93.33	NA	96.97	89.66	100.00	95.65	97.33	NA	92.86	90.91	NA	89.66	96.10	NA	NA	77.42	NA	90.91	80.85	NA	64.29	68.18	84.21	80.00	92.11	NA	75.00	80.00	NA	78.18	74.58	80.00	82.97	76.52	-6.45	0.799203	0.925595
N	coord_cassette	HMGCL	chr1	-	chr1:24134706-24143164	chr1:24134706-24137225;chr1:24137290-24140679;chr1:24140829-24143164		chr1:24137226-24137289;chr1:24140680-24140828			87.50	100.00	97.22	NA	94.74	NA	95.83	91.67	90.00	NA	86.67	NA	92.86	90.91	93.75	NA	90.00	NA	78.57	93.75	92.00	NA	93.33	90.00	NA	93.10	97.37	NA	88.00	NA	95.65	89.47	86.67	94.12	95.83	81.48	92.86	92.38	-0.48	0.752207	0.876306
K	jcn_only_AA	MICAL1	chr6	-	chr6:109767561-109767898	chr6:109767616-109767898		chr6:109767561-109767615	chr6:109767560-109767561		100.00	92.75	95.65	89.47	100.00	NA	98.48	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	90.91	100.00	96.34	100.00	95.95	90.48	100.00	97.40	96.88	94.12	95.51	95.45	98.48	92.98	100.00	94.83	100.00	94.12	99.24	99.24	0.00	0.289908	0.663989
K	cassette	SEPHS1	chr10	-	chr10:13361357-13370350	chr10:13361357-13364834;chr10:13365048-13370350		chr10:13364835-13365047			92.86	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	cassette	UBL7	chr15	-	chr15:74738569-74741526;chr15:74738569-74741966	chr15:74738569-74740818;chr15:74740942-74741526,chr15:74740942-74741966		chr15:74740819-74740941			95.00	100.00	100.00	100.00	96.20	100.00	97.67	100.00	100.00	92.00	94.44	100.00	100.00	100.00	97.22	100.00	100.00	100.00	96.04	100.00	100.00	100.00	94.87	100.00	100.00	96.15	100.00	100.00	100.00	100.00	94.59	100.00	89.23	100.00	100.00	97.22	98.84	98.08	-0.76	0.823778	0.941790
N	jcn_only_AA	LILRB1	chr19	+	chr19:55147061-55147944;chr19:55147061-55147153;chr19:55147061-55178293	chr19:55147061-55147947		chr19:55147154-55147944;chr19:55147945-55147947;chr19:55147948-55178293	chr19:55147944-55147945;chr19:55147947-55147948;chr19:55178293-55178294		60.93	44.93	62.45	62.50	61.90	69.57	58.90	59.84	53.21	56.84	52.78	62.86	48.48	59.97	59.18	63.92	64.13	55.71	63.38	62.64	61.07	59.69	61.29	63.64	60.00	59.78	56.01	60.84	55.38	63.55	58.92	59.48	52.17	62.67	64.41	61.90	55.53	59.91	4.37	0.112193	0.663989
K	intron_retention		chr1	+	chr1:43914400-43915773				chr1:43914399-43914400;chr1:43915773-43915774		5.88	7.14	15.62	NA	4.76	NA	NA	NA	0.00	NA	NA	NA	7.69	NA	6.67	NA	NA	NA	7.69	0.00	0.00	NA	13.04	NA	0.00	12.50	6.25	9.09	15.79	7.69	6.25	12.50	0.00	10.00	8.33	8.33	7.14	6.06	-1.08	0.662478	1.000000
N	alternative_last_exon	CPQ	chr8	+	chr8:41355181-41367102	chr8:41355181-41363429	chr8:41367103-41368499	chr8:41363430-41363531			96.67	75.00	98.73	NA	75.00	NA	98.11	97.78	98.88	100.00	100.00	100.00	98.31	96.97	98.39	97.40	100.00	100.00	31.25	97.37	80.00	97.37	97.56	97.78	0.00	96.67	98.11	95.45	96.43	94.74	95.65	94.74	NA	97.62	98.15	98.36	75.00	96.82	21.82	0.135344	0.344715
N	jcn_only_AD	MTCH1	chr6	-	chr6:36938471-36939657;chr6:36938471-36940478	chr6:36938471-36940427		chr6:36939658-36940427;chr6:36940428-36940478	chr6:36940427-36940428;chr6:36940478-36940479		38.54	39.44	40.48	50.91	52.48	42.31	40.54	41.55	45.70	33.72	33.85	34.29	37.39	34.78	41.50	32.75	36.89	32.26	36.96	37.71	47.42	39.31	48.48	31.08	60.61	37.54	47.18	40.13	47.74	38.71	34.43	38.05	43.75	35.29	43.89	38.42	39.99	37.62	-2.36	0.185423	0.657607
N	jcn_only_AA		chr7	+	chr7:150784160-150789176;chr7:150784160-150785586;chr7:150784160-150801450	chr7:150784160-150813879		chr7:150785587-150789176;chr7:150789177-150801450;chr7:150801451-150813879	chr7:150789176-150789177;chr7:150801450-150801451;chr7:150813879-150813880		100.00	100.00	99.10	100.00	100.00	NA	100.00	100.00	100.00	99.22	100.00	94.44	100.00	98.33	100.00	97.44	99.38	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	CD40	chr20	+	chr20:44756848-44756968;chr20:44756876-44756968	chr20:44756864-44756968		chr20:44756848-44756863;chr20:44756864-44756875	chr20:44756847-44756848;chr20:44756863-44756864		95.88	100.00	97.00	100.00	NA	98.31	100.00	98.61	98.35	98.61	100.00	98.86	96.30	98.38	98.17	98.88	97.22	98.32	92.31	97.79	97.75	98.18	100.00	98.51	NA	97.87	97.50	96.80	100.00	98.18	98.40	98.13	100.00	98.04	100.00	98.60	100.00	98.12	-1.88	0.952513	0.984606
K	intron_retention		chr20	-	chr20:34219948-34220084				chr20:34219947-34219948;chr20:34220084-34220085		3.45	0.00	1.39	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	0.00	0.00	0.00	10.53	NA	2.86	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	3.16	3.16	0.391429	1.000000
N	jcn_only_AA	CLPX	chr15	-	chr15:65443238-65444767	chr15:65443252-65444767		chr15:65443238-65443251	chr15:65443237-65443238		88.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	HNRNPAB	chr5	+	chr5:177637274-177637553				chr5:177637273-177637274;chr5:177637553-177637554		13.33	0.00	17.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	7.69	0.00	1.14	2.94	1.52	0.00	0.00	20.00	0.00	1.54	2.44	21.43	17.65	0.00	2.50	2.50	4.44	0.00	3.85	3.85	0.269690	1.000000
N	alternative_acceptor		chr19	+	chr19:36123904-36124002;chr19:36123904-36123999	chr19:36123904-36123978		chr19:36123979-36123999;chr19:36124000-36124002	chr19:36123999-36124000;chr19:36124002-36124003		100.00	100.00	100.00	100.00	100.00	NA	93.33	NA	90.00	100.00	93.75	94.12	100.00	90.91	100.00	100.00	100.00	85.71	NA	100.00	100.00	NA	100.00	NA	NA	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	0.00	0.953064	0.990505
N	alternative_acceptor	IL10RA,STIP1	chr11	+	chr11:117864126-117864713;chr11:117864126-117864476	chr11:117864126-117864402		chr11:117864403-117864476;chr11:117864477-117864713	chr11:117864476-117864477;chr11:117864713-117864714		0.52	8.70	0.71	NA	8.33	NA	0.00	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.45	9.09	0.00	1.45	0.53	3.57	0.63	0.51	0.00	0.00	0.00	0.92	0.98	60.00	0.54	0.82	0.35	3.57	0.48	-3.08	0.290065	0.709013
K	intron_retention	RNF135	chr17	+	chr17:29298464-29311634				chr17:29298463-29298464;chr17:29311634-29311635		20.59	48.08	10.00	NA	32.35	NA	8.89	13.33	5.41	NA	17.86	NA	27.91	12.82	8.33	NA	23.91	NA	55.00	18.42	10.00	NA	20.37	NA	69.23	23.91	10.00	NA	27.50	NA	14.81	7.69	42.11	16.67	18.37	NA	45.09	16.62	-28.48	0.145423	1.000000
N	cassette	IRF3	chr19	-	chr19:50163091-50165681;chr19:50163091-50165204	chr19:50163091-50163969;chr19:50164102-50165681,chr19:50164102-50165204		chr19:50163970-50164101			100.00	100.00	100.00	NA	100.00	95.45	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	98.85	100.00	96.77	NA	90.91	NA	100.00	100.00	96.97	NA	100.00	100.00	94.74	100.00	97.59	NA	100.00	NA	100.00	100.00	0.00	0.700645	0.890437
K	coord_cassette	MARK3	chr14	+	chr14:103958372-103969218	chr14:103958372-103964838;chr14:103964866-103966492;chr14:103966538-103969218		chr14:103964839-103964865;chr14:103966493-103966537			1.69	4.05	1.37	3.45	5.56	3.08	0.00	0.00	1.89	1.96	5.41	0.00	0.00	2.50	0.00	5.17	2.56	0.00	5.88	1.85	4.41	5.00	2.70	2.70	4.17	3.51	4.35	4.17	3.39	1.47	1.49	1.01	7.79	3.33	6.25	4.94	4.11	1.77	-2.34	0.231108	0.643829
N	alternative_acceptor	C18orf8	chr18	+	chr18:21110262-21110536;chr18:21110262-21110474;chr18:21110262-21110350	chr18:21110262-21110363		chr18:21110351-21110363;chr18:21110364-21110474;chr18:21110475-21110536	chr18:21110363-21110364;chr18:21110474-21110475;chr18:21110536-21110537		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	RNPEP	chr1	+	chr1:201970617-201970786				chr1:201970616-201970617;chr1:201970786-201970787		0.00	5.00	1.09	NA	2.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.90	0.00	NA	1.30	4.46	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.601311	1.000000
K	cassette	MKNK1	chr1	-	chr1:47049002-47059784	chr1:47049002-47051545;chr1:47051647-47059784		chr1:47051546-47051646			1.67	0.00	3.57	0.00	0.00	0.00	4.35	4.55	0.00	6.25	4.73	5.26	3.68	3.61	3.23	8.16	3.98	2.56	4.35	3.92	0.00	5.26	5.08	18.75	0.00	2.44	2.27	7.41	6.82	NA	0.00	3.57	0.00	6.06	4.69	6.67	1.84	3.02	1.18	0.595451	0.848084
K	intron_retention	DHRS1	chr14	-	chr14:24760202-24760344				chr14:24760201-24760202;chr14:24760344-24760345		21.05	5.88	0.00	NA	5.56	0.00	0.00	0.00	NA	NA	0.00	0.00	6.67	NA	NA	NA	0.00	NA	5.26	7.69	4.35	NA	5.56	NA	0.00	NA	NA	NA	7.14	NA	7.14	11.76	0.00	0.00	0.00	0.00	2.63	7.42	4.79	0.662289	1.000000
N	jcn_only_AA	SLC26A6	chr3	-	chr3:48665738-48665866;chr3:48665621-48665866	chr3:48665472-48665866		chr3:48665472-48665620;chr3:48665621-48665737	chr3:48665471-48665472;chr3:48665620-48665621		100.00	86.49	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	CCS	chr11	+	chr11:66366725-66366929				chr11:66366724-66366725;chr11:66366929-66366930		30.00	29.03	56.25	NA	35.29	NA	0.00	NA	8.33	NA	4.17	0.00	0.00	NA	4.35	NA	0.00	NA	25.93	43.75	31.43	NA	27.27	NA	47.50	38.89	68.00	NA	21.74	NA	47.62	54.55	33.33	NA	50.00	63.64	27.48	41.32	13.84	0.143665	1.000000
N	alternative_acceptor	UNC119	chr17	-	chr17:26874424-26874694	chr17:26874428-26874694		chr17:26874424-26874427	chr17:26874423-26874424		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.44	100.00	100.00	100.00	NA	100.00	90.91	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.193937	0.660713
N	cassette	AOAH	chr7	-	chr7:36552987-36561644	chr7:36552987-36554077;chr7:36554283-36561644		chr7:36554078-36554282			5.26	2.85	5.00	3.03	1.77	2.91	3.03	2.74	3.38	2.08	2.63	1.89	0.00	10.00	4.71	0.00	0.00	0.00	2.67	7.55	2.96	3.03	2.87	3.75	1.89	5.19	3.97	1.67	1.87	2.36	3.95	5.95	2.74	2.04	2.48	4.52	2.71	5.22	2.52	0.018360	0.373030
N	jcn_only_AD	PARVG	chr22	+	chr22:44582522-44583655;chr22:44582597-44583655	chr22:44581753-44583655		chr22:44581753-44582521;chr22:44582522-44582596	chr22:44581752-44581753;chr22:44582521-44582522		100.00	96.20	96.43	NA	100.00	NA	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	96.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.92	98.91	100.00	1.09	0.404330	0.669315
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12763275-12766507;chr19:12763212-12766507	chr19:12763244-12766507		chr19:12763212-12763243;chr19:12763244-12763274	chr19:12763211-12763212;chr19:12763243-12763244		1.45	2.36	3.67	2.04	1.92	2.86	2.21	2.50	1.57	1.48	1.85	2.19	1.98	0.00	3.41	2.15	2.38	1.05	4.26	3.70	6.25	7.02	2.86	3.26	2.47	1.39	2.00	2.53	4.41	1.98	1.82	7.29	6.15	3.49	5.49	1.94	2.42	1.64	-0.78	0.122151	0.608355
K	intron_retention	GAS6	chr13	-	chr13:114541165-114542700				chr13:114541164-114541165;chr13:114542700-114542701		7.14	2.08	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	21.43	0.00	0.00	0.00	1.59	2.78	10.20	0.00	0.00	2.56	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	-1.75	0.525265	1.000000
N	alternative_donor	FAM193B	chr5	-	chr5:176951034-176951185;chr5:176951034-176951590	chr5:176951034-176951774		chr5:176951186-176951590;chr5:176951591-176951774	chr5:176951590-176951591;chr5:176951774-176951775		22.22	0.00	14.71	0.00	10.71	16.67	NA	NA	NA	NA	NA	NA	NA	NA	11.76	NA	NA	NA	13.64	12.50	0.00	NA	9.09	NA	10.81	0.00	4.65	NA	0.00	0.00	10.53	8.82	12.50	0.00	0.00	0.00	11.66	11.52	-0.14	0.721929	0.885082
N	jcn_only_AA		chr11	+	chr11:47336879-47343361;chr11:47336879-47345091	chr11:47336879-47345221		chr11:47343362-47345091;chr11:47345092-47345221	chr11:47345091-47345092;chr11:47345221-47345222		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	90.91	100.00	99.07	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor		chr11	+	chr11:65403275-65403401;chr11:65403275-65403421	chr11:65403275-65403644		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		68.75	83.33	78.26	NA	80.00	NA	100.00	93.75	94.12	100.00	81.82	NA	100.00	100.00	88.00	NA	90.91	NA	90.00	86.67	63.64	NA	88.89	NA	NA	88.00	76.19	NA	72.73	NA	80.00	78.57	100.00	NA	76.92	77.78	100.00	87.34	-12.66	0.166644	0.660713
N	jcn_only_AA	COL23A1	chr5	-	chr5:177684569-177686721	chr5:177684584-177686721		chr5:177684569-177684583	chr5:177684568-177684569		0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.94	0.94	2.44	0.00	0.00	NA	0.00	0.00	0.00	0.00	11.76	NA	0.00	0.00	0.00	NA	0.00	0.00	4.17	3.70	0.00	0.00	0.00	0.00	0.373901	0.663989
K	alternative_donor	TPT1	chr13	-	chr13:45914320-45914846;chr13:45914320-45914486	chr13:45914320-45915176		chr13:45914487-45914846;chr13:45914847-45915176	chr13:45914846-45914847;chr13:45915176-45915177		7.35	5.79	6.74	8.95	4.66	7.19	1.99	2.12	1.60	2.65	2.29	1.73	1.35	2.00	1.35	2.23	2.34	2.04	4.00	5.08	3.77	5.56	4.19	5.45	6.32	5.05	5.09	3.59	2.90	3.22	3.87	4.68	6.71	5.39	3.66	4.42	4.89	4.46	-0.43	0.928557	0.984606
N	alternative_acceptor	LACTB	chr15	+	chr15:63421850-63423184;chr15:63421850-63426576;chr15:63421850-63447849;chr15:63421850-63433478	chr15:63421850-63433199		chr15:63423185-63426576;chr15:63426577-63433199;chr15:63433200-63433478;chr15:63433479-63447849	chr15:63426576-63426577;chr15:63433199-63433200;chr15:63433478-63433479;chr15:63447849-63447850		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	2.56	6.67	0.00	0.00	0.00	0.00	0.00	4.55	4.35	0.00	2.94	0.00	1.79	0.00	0.00	0.00	0.737953	0.902878
K	intron_retention	BAZ2A	chr12	-	chr12:56993633-56993747				chr12:56993632-56993633;chr12:56993747-56993748		5.26	NA	4.55	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	NA	0.00	0.00	NA	0.00	3.03	NA	0.00	0.00	3.57	2.38	0.00	0.00	0.00	2.99	0.00	1.11	1.11	0.320827	1.000000
N	alternative_acceptor	LILRB4	chr19	+	chr19:55178201-55178815;chr19:55178201-55178261;chr19:55178201-55179085;chr19:55178201-55178293	chr19:55178201-55179088		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		62.38	54.61	66.67	65.64	63.31	64.40	65.99	68.11	69.25	69.19	66.19	68.87	65.32	66.48	67.44	68.34	65.74	71.64	66.94	64.95	67.42	62.36	62.87	62.85	67.61	63.58	61.25	61.69	61.71	63.98	66.07	63.99	65.49	62.75	66.07	64.61	65.74	65.51	-0.23	0.677093	0.880186
K	alternative_last_exon	DOK3	chr5	-	chr5:176931573-176931743,chr5:176931600-176931743;chr5:176930394-176931743	chr5:176931662-176931743	chr5:176928908-176930393	chr5:176930751-176931661			44.66	74.36	41.23	77.78	53.42	91.67	54.95	66.29	59.21	60.78	51.27	NA	52.76	81.08	76.47	55.56	51.61	NA	72.73	51.09	51.34	71.43	50.26	NA	78.52	56.94	45.80	58.33	41.53	80.00	49.35	41.20	68.22	52.38	52.20	72.22	70.47	54.02	-16.46	0.244553	0.458097
K	intron_retention	DDX39A	chr19	-	chr19:14520686-14521027				chr19:14520685-14520686;chr19:14521027-14521028		27.08	24.79	25.45	22.39	20.43	18.60	12.20	15.38	13.04	9.21	8.89	2.63	8.51	14.29	15.38	5.88	7.23	3.03	19.72	24.56	19.64	22.50	17.59	18.60	28.38	33.33	28.57	19.05	22.11	22.06	35.29	30.77	19.19	18.56	15.05	20.83	19.45	25.82	6.37	0.551462	1.000000
N	jcn_only_AA	SUGP2	chr19	-	chr19:19104609-19105174;chr19:19101959-19105174	chr19:19104550-19105174		chr19:19101959-19104549;chr19:19104550-19104608	chr19:19101958-19101959;chr19:19104549-19104550		95.45	93.65	91.49	100.00	100.00	100.00	84.62	100.00	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.67	100.00	95.45	100.00	95.24	100.00	100.00	87.50	100.00	100.00	98.18	100.00	100.00	97.62	93.90	100.00	100.00	100.00	95.28	100.00	4.72	0.610226	0.820792
K	intron_retention	PPIA	chr7	+	chr7:44836393-44838346				chr7:44836392-44836393;chr7:44838346-44838347		14.29	0.00	20.51	NA	9.09	NA	0.00	5.88	2.50	5.00	9.52	NA	6.06	15.79	4.84	5.77	11.11	7.14	0.00	21.43	9.09	30.77	27.59	43.48	NA	9.09	19.23	13.33	21.05	16.67	7.14	14.29	NA	28.00	27.78	22.73	0.00	11.69	11.69	0.343975	1.000000
N	jcn_only_AD	PSTPIP1	chr15	+	chr15:77324770-77325202;chr15:77324741-77325202	chr15:77324736-77325202		chr15:77324736-77324740;chr15:77324741-77324769	chr15:77324735-77324736;chr15:77324740-77324741		95.83	90.18	88.57	88.24	88.00	90.91	100.00	NA	100.00	100.00	95.24	NA	100.00	NA	100.00	NA	96.67	NA	91.33	78.57	92.41	72.73	88.89	NA	86.32	80.00	86.96	NA	93.75	NA	80.00	87.18	89.31	85.71	87.10	100.00	90.75	80.00	-10.75	0.107288	0.646283
K	cassette	PNPLA6	chr19	+	chr19:7606571-7607446	chr19:7606571-7606869;chr19:7606954-7607446		chr19:7606870-7606953			93.88	82.35	92.86	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	61.54	91.18	77.78	NA	84.62	NA	NA	100.00	NA	NA	100.00	NA	91.17	100.00	8.83	0.316168	0.709176
N	cassette	DOK2	chr8	-	chr8:21768369-21771049;chr8:21769500-21771049	chr8:21769500-21769739,chr8:21768369-21769739;chr8:21770022-21771049		chr8:21769740-21770021			91.49	100.00	94.12	NA	88.31	NA	96.97	95.24	NA	NA	90.48	NA	100.00	100.00	NA	85.71	96.24	NA	89.36	87.50	100.00	NA	85.07	NA	100.00	100.00	100.00	100.00	84.56	NA	NA	85.71	88.89	100.00	94.74	NA	98.48	95.24	-3.25	0.761802	0.925284
N	cassette	FUNDC1	chrX	-	chrX:44383522-44397712	chrX:44383522-44386482;chrX:44386612-44397712		chrX:44386483-44386611			100.00	100.00	100.00	NA	100.00	NA	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SVBP	chr1	-	chr1:43282252-43282860	chr1:43282277-43282860		chr1:43282252-43282276	chr1:43282251-43282252		6.25	0.00	0.00	NA	2.56	0.00	3.23	0.00	4.35	4.00	0.00	0.00	0.00	0.00	3.57	0.00	1.82	0.00	18.18	7.14	4.35	0.00	3.92	0.00	NA	0.00	0.00	0.00	4.08	3.57	0.00	13.33	0.00	5.88	3.33	0.00	0.00	0.00	0.00	0.611811	0.853341
N	cassette	PLEKHM2	chr1	+	chr1:16054644-16055163;chr1:16054644-16055596	chr1:16054644-16054761;chr1:16054853-16055596,chr1:16054853-16055163		chr1:16054762-16054852			100.00	100.00	98.65	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.33	100.00	98.48	93.52	100.00	100.00	100.00	97.18	100.00	95.65	96.43	100.00	97.96	100.00	100.00	97.96	97.18	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MAPK1IP1L	chr14	+	chr14:55530044-55531333				chr14:55530043-55530044;chr14:55531333-55531334		3.51	5.17	3.64	1.79	0.00	0.78	4.26	4.35	3.28	2.50	0.00	0.00	1.59	2.94	2.41	2.78	0.00	0.00	6.06	0.00	2.44	4.65	1.52	2.00	0.00	2.00	2.04	0.00	0.00	0.00	2.63	5.36	3.77	4.00	4.41	2.38	4.01	2.79	-1.23	0.210016	1.000000
K	intron_retention	SULT1A1	chr16	-	chr16:28618399-28619611				chr16:28618398-28618399;chr16:28619611-28619612		4.76	10.59	5.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	1.27	0.00	0.00	0.00	2.78	0.00	3.23	0.00	6.25	7.69	8.11	0.00	3.12	0.00	14.81	3.57	0.00	0.00	4.44	0.00	4.55	4.17	6.41	1.59	4.41	2.63	6.33	4.06	-2.27	0.745821	1.000000
N	cassette	PDLIM7	chr5	-	chr5:176916629-176917870;chr5:176916629-176918010	chr5:176916629-176916771;chr5:176916834-176917870,chr5:176916834-176918010		chr5:176916772-176916833			90.62	73.91	91.58	93.33	86.11	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	91.67	100.00	100.00	100.00	100.00	84.62	93.65	91.94	72.73	93.10	NA	NA	100.00	97.37	NA	100.00	NA	87.50	83.33	73.33	92.31	92.98	100.00	84.62	92.66	8.04	0.283590	0.709176
N	jcn_only_AA		chr16	+	chr16:89804314-89805599;chr16:89804314-89804405;chr16:89804314-89804414	chr16:89804314-89804383		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		100.00	100.00	90.48	100.00	91.67	100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	92.86	NA	93.33	100.00	100.00	100.00	0.00	0.534998	0.773508
N	jcn_only_AA	GAK	chr4	-	chr4:844873-845537;chr4:844858-845537;chr4:844890-845537	chr4:844806-845537		chr4:844806-844857;chr4:844858-844872;chr4:844873-844889	chr4:844805-844806;chr4:844857-844858;chr4:844872-844873		5.26	4.03	5.00	2.53	1.03	1.27	0.00	2.38	1.56	1.82	3.77	3.33	3.12	2.04	3.95	5.45	0.00	5.56	5.19	4.62	4.44	4.92	1.11	3.77	2.35	4.24	4.71	5.17	0.00	4.62	4.44	3.36	3.85	4.17	3.70	6.38	3.49	4.34	0.85	0.433522	0.702974
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7217308-7217398				chr17:7217307-7217308;chr17:7217398-7217399		4.55	2.15	6.67	3.57	4.26	0.00	1.92	0.00	0.00	0.00	2.38	0.00	1.61	3.33	0.00	0.00	2.27	0.00	2.33	8.33	1.96	9.09	6.25	13.33	0.00	1.39	7.46	4.17	8.00	5.88	7.04	7.22	3.92	6.90	6.25	8.75	2.04	3.94	1.90	0.528621	1.000000
K	alternative_acceptor	APOO	chrX	-	chrX:23851628-23858429	chrX:23851730-23858429		chrX:23851628-23851729	chrX:23851627-23851628		50.00	33.33	47.37	30.77	40.00	31.58	44.44	45.45	48.98	40.00	43.75	35.71	46.67	NA	51.61	43.75	47.06	NA	44.00	NA	49.37	NA	33.33	NA	35.00	41.67	64.29	NA	50.00	38.46	50.00	55.56	36.36	35.00	45.00	31.25	40.18	47.73	7.55	0.058232	0.570243
N	alternative_acceptor	PLXNB2	chr22	-	chr22:50714618-50715057;chr22:50714657-50715057;chr22:50714351-50715057	chr22:50714393-50715057		chr22:50714351-50714392;chr22:50714393-50714617;chr22:50714618-50714656	chr22:50714350-50714351;chr22:50714392-50714393;chr22:50714617-50714618		97.46	96.65	96.15	93.10	95.07	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	98.59	98.28	99.23	100.00	96.34	95.33	95.11	91.23	90.30	95.83	96.30	96.25	96.57	95.00	96.46	100.00	95.61	96.31	97.61	94.32	94.81	95.38	97.13	96.85	-0.28	0.745265	0.903536
K	jcn_only_AD	SMIM20	chr4	+	chr4:25863776-25929934	chr4:25916045-25929934		chr4:25863776-25916044	chr4:25863775-25863776		100.00	100.00	100.00	NA	100.00	NA	100.00	93.33	83.33	93.33	100.00	92.31	100.00	100.00	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	92.68	100.00	100.00	57.89	100.00	100.00	100.00	100.00	100.00	72.22	100.00	100.00	0.00	0.363217	0.657607
N	alternative_acceptor	BAX,TPM3P9	chr19	+	chr19:49464172-49464788;chr19:49464172-49464827	chr19:49464172-49464739		chr19:49464740-49464788;chr19:49464789-49464827	chr19:49464788-49464789;chr19:49464827-49464828		21.00	20.59	21.64	30.25	27.90	32.58	15.07	25.40	19.75	17.14	19.67	17.39	19.27	20.69	29.07	21.43	26.09	20.00	19.67	18.56	23.01	24.36	25.55	21.62	17.02	22.43	18.18	25.00	21.23	20.29	24.65	25.00	23.17	28.57	23.97	25.53	19.47	21.71	2.25	0.084357	0.585944
K	intron_retention	LRP1	chr12	+	chr12:57567764-57569242				chr12:57567763-57567764;chr12:57569242-57569243		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	6.82	0.00	0.00	NA	0.00	NA	NA	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	coord_cassette	TPRA1	chr3	-	chr3:127294109-127295459	chr3:127294109-127294245;chr3:127294349-127294591;chr3:127294653-127295459		chr3:127294246-127294348;chr3:127294592-127294652			100.00	100.00	100.00	96.88	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	94.12	90.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_last_exon	LSM14B,ZFAS1	chr20	+	chr20:47895746-47896474;chr20:47895746-47905581;chr20:47895746-47897021	chr20:47895746-47911939	chr20:47905582-47905797;chr20:47897022-47897718	chr20:47911940-47912275			2.08	4.69	0.00	1.56	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.98	0.00	0.00	1.72	6.06	0.00	0.00	0.00	0.00	0.00	1.69	1.27	3.94	1.79	2.38	1.30	3.82	0.00	-3.82	0.065531	0.271550
K	intron_retention		chr11	+	chr11:67059652-67066528				chr11:67059651-67059652;chr11:67066528-67066529		7.69	8.99	12.37	NA	6.25	NA	0.00	0.00	0.00	NA	4.00	NA	10.71	0.00	0.00	NA	2.86	NA	16.13	4.17	3.57	NA	12.77	NA	13.04	11.76	8.33	NA	10.71	NA	0.00	5.17	8.62	0.00	6.98	0.00	9.85	2.08	-7.77	0.430396	1.000000
K	intron_retention	DGAT1	chr8	-	chr8:145541109-145541206				chr8:145541108-145541109;chr8:145541206-145541207		0.00	2.70	8.57	12.50	6.12	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	8.70	0.00	9.52	13.51	0.00	6.67	4.00	3.33	0.00	7.89	0.00	15.79	4.65	11.76	5.71	3.23	5.36	4.69	2.00	-2.69	0.700601	1.000000
N	jcn_only_AD	ABRACL	chr6	+	chr6:139349696-139355291;chr6:139350450-139355291;chr6:139350013-139355291;chr6:139349951-139355291	chr6:139354993-139355291		chr6:139349696-139349950;chr6:139349951-139350012;chr6:139350013-139350449;chr6:139350450-139354992	chr6:139349695-139349696;chr6:139349950-139349951;chr6:139350012-139350013;chr6:139350449-139350450		7.14	9.17	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.865030	0.930693
K	intron_retention		chr19	+	chr19:3526182-3526256				chr19:3526181-3526182;chr19:3526256-3526257		3.57	0.00	3.33	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.00	NA	NA	5.56	0.00	7.14	2.78	0.00	NA	0.00	0.00	9.68	8.11	NA	7.69	0.00	0.00	0.00	3.17	3.17	0.767319	1.000000
K	coord_cassette	EIF3I	chr1	+	chr1:32690077-32694099	chr1:32690077-32691749;chr1:32691922-32692003;chr1:32692132-32694099		chr1:32691750-32691921;chr1:32692004-32692131			94.44	100.00	97.22	94.29	94.74	100.00	98.99	97.50	97.37	100.00	99.08	100.00	100.00	97.22	96.05	99.24	97.81	100.00	92.31	90.91	94.34	95.38	96.10	100.00	100.00	93.02	100.00	98.36	98.51	98.65	89.74	89.39	93.33	95.18	95.89	96.12	99.50	93.73	-5.77	0.095460	0.643829
N	jcn_only_AD	C11orf73	chr11	+	chr11:86055563-86055644;chr11:86048535-86055644	chr11:86048573-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	92.86	100.00	100.00	0.00	0.709650	0.847991
K	intron_retention	C7orf49	chr7	-	chr7:134851624-134852483				chr7:134851623-134851624;chr7:134852483-134852484		60.53	10.71	25.81	NA	5.00	NA	19.61	64.71	52.46	45.00	8.89	84.38	8.93	64.29	41.67	39.39	6.52	65.38	NA	55.17	21.43	NA	25.00	70.97	NA	64.52	29.03	55.00	13.04	62.50	64.29	60.98	9.09	48.15	12.50	81.67	9.90	64.29	54.39	0.001942	0.920759
K	alternative_acceptor	SDR39U1	chr14	-	chr14:24909808-24909988;chr14:24909615-24909988	chr14:24909699-24909988		chr14:24909615-24909698;chr14:24909699-24909807	chr14:24909614-24909615;chr14:24909698-24909699		64.52	69.70	65.00	58.33	67.65	NA	76.00	72.22	60.00	66.67	82.35	87.50	73.53	83.33	66.67	66.67	68.00	76.92	81.25	73.68	75.00	61.54	64.86	73.68	75.00	65.22	75.00	75.00	78.38	76.92	65.00	69.23	81.25	65.22	77.27	72.00	75.50	68.72	-6.78	0.158913	0.660713
K	intron_retention	FIBP	chr11	-	chr11:65652128-65652405				chr11:65652127-65652128;chr11:65652405-65652406		4.48	5.56	3.75	0.00	4.35	5.41	1.43	0.00	0.00	0.00	0.00	0.00	0.00	2.86	1.82	0.00	0.00	0.00	4.32	3.51	3.49	5.00	5.56	8.00	5.79	4.26	6.15	0.00	3.45	7.32	4.26	7.69	3.38	2.78	2.44	2.38	3.85	3.88	0.03	0.742045	1.000000
K	jcn_only_AD	MMD,SLC39A11	chr17	-	chr17:70845944-70943890	chr17:70845944-70943869		chr17:70943870-70943890	chr17:70943890-70943891		31.91	NA	23.08	NA	NA	NA	22.86	16.67	18.97	23.26	30.00	27.45	18.97	35.00	24.49	20.00	38.00	25.00	30.00	14.29	20.83	25.00	15.62	14.29	NA	16.28	13.04	18.18	33.33	18.18	13.33	19.15	17.65	12.90	16.67	14.81	20.91	16.48	-4.44	0.820765	0.917879
K	intron_retention	CLN3,RP11-435I10.4	chr16	-	chr16:28493867-28493946				chr16:28493866-28493867;chr16:28493946-28493947		2.63	12.50	5.88	0.00	15.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	8.89	4.35	2.38	9.52	7.02	8.82	10.00	1.79	6.06	0.00	6.38	3.77	3.85	8.00	7.27	7.14	7.32	11.59	8.08	2.21	-5.87	0.436232	1.000000
N	alternative_donor	SNRNP70	chr19	+	chr19:49607993-49610881	chr19:49609418-49610881		chr19:49607993-49609417	chr19:49607992-49607993		4.13	0.69	6.47	0.54	0.84	0.42	1.56	3.23	1.47	1.59	1.72	4.00	1.94	2.44	3.23	2.68	2.41	3.03	0.30	3.49	0.87	3.57	3.48	7.06	0.76	6.38	2.94	1.63	2.19	1.43	3.42	3.59	0.58	5.15	5.98	5.92	0.72	3.46	2.73	0.002099	0.120868
N	jcn_only_AA		chr22	+	chr22:38040968-38041408;chr22:38040968-38041338	chr22:38040968-38041371		chr22:38041339-38041371;chr22:38041372-38041408	chr22:38041371-38041372;chr22:38041408-38041409		100.00	93.22	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AA	ARSA	chr22	-	chr22:51065835-51066373	chr22:51066221-51066373					81.82	81.25	82.35	NA	91.67	NA	93.18	94.12	93.88	81.48	78.12	91.67	92.31	85.71	93.10	NA	94.12	90.91	NA	78.95	100.00	100.00	84.62	90.00	NA	84.85	86.49	92.86	90.32	94.74	88.00	78.79	60.00	93.75	95.65	100.00	86.78	85.28	-1.50	0.656393	0.846812
K	intron_retention	RNASEK	chr17	+	chr17:6916836-6916984				chr17:6916835-6916836;chr17:6916984-6916985		13.75	20.97	17.57	19.30	15.38	14.63	5.45	13.21	5.56	8.11	7.23	5.77	13.04	12.96	12.12	12.66	5.88	6.67	15.56	10.53	14.52	20.00	18.75	16.44	8.57	19.48	20.00	20.00	16.85	18.42	19.75	18.82	21.15	25.00	19.70	24.10	14.30	13.48	-0.82	0.765822	1.000000
N	alternative_acceptor	CSNK1D	chr17	-	chr17:80202708-80203851	chr17:80203006-80203851		chr17:80202708-80203005	chr17:80202707-80202708		12.96	10.34	13.21	5.08	7.14	2.70	0.00	2.50	0.00	0.00	1.67	0.00	1.05	1.27	2.86	1.03	2.99	0.00	11.43	8.00	8.16	8.33	10.64	5.45	11.54	5.88	12.20	3.64	7.58	4.17	8.62	11.94	11.76	7.89	10.53	8.41	10.88	6.94	-3.95	0.698440	0.886724
K	intron_retention	RP11-574K11.31	chr10	-	chr10:75562535-75562729				chr10:75562534-75562535;chr10:75562729-75562730		8.51	4.00	12.57	5.56	7.14	3.12	0.00	0.00	2.06	0.00	0.00	0.96	1.05	0.00	3.37	0.00	1.12	0.00	0.00	10.34	7.58	8.11	8.06	9.23	0.00	7.25	5.92	4.69	3.03	4.83	18.18	13.19	3.85	12.82	9.30	8.80	0.53	7.88	7.35	0.211402	1.000000
K	cassette	STK10	chr5	-	chr5:171472027-171479932	chr5:171472027-171472429;chr5:171472485-171479932		chr5:171472430-171472484			0.00	0.00	1.75	5.88	0.00	NA	1.49	3.92	0.00	7.32	3.12	10.39	3.08	4.08	8.33	11.67	5.80	12.68	7.69	0.00	5.00	1.56	1.18	4.69	0.00	1.92	0.00	2.70	3.57	12.50	2.44	3.23	4.00	0.00	0.00	3.26	2.29	2.18	-0.11	0.654822	0.873328
K	intron_retention		chr2	-	chr2:74755134-74755374				chr2:74755133-74755134;chr2:74755374-74755375		5.21	10.57	11.43	5.08	10.11	4.88	1.33	0.00	0.00	0.81	0.58	0.00	1.32	0.00	4.17	3.16	1.18	0.00	8.70	6.98	6.82	13.89	13.07	9.68	9.26	7.14	10.43	5.95	7.05	5.83	11.54	12.00	9.30	8.70	7.84	10.17	8.98	6.10	-2.88	0.818725	1.000000
N	cassette	AKR1B1	chr7	-	chr7:134133246-134134471	chr7:134133246-134133748;chr7:134133872-134134471		chr7:134133749-134133871			96.84	100.00	95.89	90.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	96.61	94.23	96.34	96.24	95.74	100.00	98.61	97.48	100.00	97.81	100.00	98.78	94.89	88.89	96.46	95.88	97.74	100.00	98.69	-1.31	0.494262	0.778272
K	alternative_first_exon	HMHA1	chr19	+	chr19:1067495-1068412	chr19:1067674-1068412	chr19:1067165-1067494	chr19:1067497-1067673			7.69	0.00	19.44	NA	NA	NA	2.63	15.38	42.22	15.38	0.00	NA	4.08	24.00	45.00	6.67	2.27	NA	NA	9.09	NA	NA	0.00	NA	3.45	30.77	7.69	NA	0.00	NA	NA	25.00	NA	0.00	0.00	14.29	3.04	15.38	12.34	0.026739	0.118071
N	alternative_acceptor	VPS41	chr7	-	chr7:38765680-38766508	chr7:38765927-38766508		chr7:38765680-38765926	chr7:38765679-38765680		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	96.08	97.22	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	RHOT2	chr16	+	chr16:718570-718655				chr16:718569-718570;chr16:718655-718656		0.00	0.00	3.23	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	2.08	0.00	NA	0.00	0.00	5.26	2.78	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.82	7.69	6.25	2.94	2.22	1.39	0.00	-1.39	0.629122	1.000000
N	jcn_only_AA	CD33	chr19	+	chr19:51738932-51739077;chr19:51738932-51742327	chr19:51738932-51742772		chr19:51739078-51742327;chr19:51742328-51742772	chr19:51742327-51742328;chr19:51742772-51742773		100.00	94.77	96.05	100.00	98.33	100.00	98.58	100.00	100.00	100.00	96.12	98.44	96.26	NA	100.00	100.00	97.56	96.43	100.00	100.00	100.00	100.00	95.38	100.00	87.18	89.29	92.39	93.75	94.03	95.65	100.00	100.00	97.83	97.87	100.00	96.30	97.05	100.00	2.95	0.482687	0.741163
K	cassette	DCTN2	chr12	-	chr12:57929629-57939810	chr12:57929629-57932301;chr12:57932308-57939810		chr12:57932302-57932307			18.75	15.22	14.00	NA	13.51	NA	16.90	14.06	11.88	14.16	15.97	19.23	11.51	9.23	13.39	13.22	9.43	15.56	21.43	18.57	14.71	10.00	21.33	20.45	17.39	26.39	12.09	11.63	16.28	11.11	9.62	10.53	NA	12.68	18.82	15.85	16.90	16.32	-0.58	0.904106	0.971172
K	jcn_only_AA	ARL6IP4	chr12	+	chr12:123465847-123466202;chr12:123465847-123466117	chr12:123465847-123466141		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		57.14	61.87	54.17	58.70	63.28	65.08	64.91	56.67	53.42	71.64	61.11	72.34	62.14	53.33	62.07	64.56	64.76	68.29	70.97	55.56	69.00	64.00	62.22	52.00	72.79	68.75	46.67	69.05	74.81	76.47	82.35	57.58	68.00	73.17	64.44	51.06	66.45	56.91	-9.55	0.396295	0.668392
N	jcn_only_AA	FAM118B,ILK	chr11	+	chr11:6625053-6625477;chr11:6625053-6625455	chr11:6625053-6625409		chr11:6625410-6625455;chr11:6625456-6625477	chr11:6625455-6625456;chr11:6625477-6625478		11.32	16.67	14.29	NA	14.29	NA	22.95	21.85	31.82	37.84	30.92	42.55	17.72	26.23	18.67	33.33	28.97	30.95	NA	20.83	24.00	22.22	15.71	25.00	NA	16.39	18.33	20.00	27.12	20.00	13.64	20.00	10.00	17.86	23.40	20.00	17.20	18.61	1.41	0.673523	0.854354
N	alternative_donor		chr19	-	chr19:12790358-12790457	chr19:12790358-12790436		chr19:12790437-12790457	chr19:12790457-12790458		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	0.00	0.373901	0.650093
K	intron_retention	DDIT3	chr12	-	chr12:57911208-57911488				chr12:57911207-57911208;chr12:57911488-57911489		41.67	50.00	50.00	71.43	60.00	60.00	NA	33.33	22.73	NA	NA	NA	NA	30.43	33.33	NA	NA	NA	39.29	47.62	44.00	41.18	47.83	58.33	72.73	34.09	50.00	72.73	61.54	NA	36.00	39.68	47.92	54.55	40.00	60.00	48.96	35.05	-13.91	0.244343	1.000000
K	intron_retention		chr20	-	chr20:34214304-34214656				chr20:34214303-34214304;chr20:34214656-34214657		84.21	78.36	84.21	88.89	84.00	86.76	76.47	81.82	76.92	NA	NA	NA	87.50	100.00	85.00	100.00	75.00	NA	77.94	75.86	79.69	74.07	89.74	88.89	83.33	89.74	87.93	90.91	87.50	88.89	71.79	69.12	72.50	79.49	78.38	87.04	78.15	83.01	4.86	0.803222	1.000000
K	jcn_only_AD	TMEM94	chr17	+	chr17:73495164-73495342	chr17:73495200-73495342		chr17:73495164-73495199	chr17:73495163-73495164		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	5.56	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AA	TMEM150B	chr19	-	chr19:55831972-55834015;chr19:55833903-55834015;chr19:55832368-55834015;chr19:55832788-55834015;chr19:55832476-55834015;chr19:55832413-55834015;chr19:55833470-55834015	chr19:55832462-55834015		chr19:55831972-55832367;chr19:55832368-55832412;chr19:55832413-55832461;chr19:55832462-55832475;chr19:55832476-55832787;chr19:55832788-55833469;chr19:55833470-55833902	chr19:55831971-55831972;chr19:55832367-55832368;chr19:55832412-55832413;chr19:55832461-55832462;chr19:55832475-55832476;chr19:55832787-55832788;chr19:55833469-55833470		60.68	69.77	50.52	NA	50.00	NA	49.30	45.75	48.91	60.87	55.56	55.56	62.92	58.85	62.11	55.56	62.16	76.19	NA	56.04	53.49	NA	59.26	59.26	72.73	69.72	69.31	75.00	68.75	77.42	48.94	51.09	NA	50.00	53.33	63.33	66.34	57.45	-8.90	0.309753	0.663989
K	intron_retention		chr19	-	chr19:54756267-54756348				chr19:54756266-54756267;chr19:54756348-54756349		5.08	3.41	NA	0.00	9.18	0.00	0.00	0.00	NA	0.00	2.05	0.00	1.63	2.04	NA	0.00	1.36	0.00	2.14	2.56	NA	0.00	6.88	1.69	5.24	3.12	17.24	4.49	9.64	2.86	4.35	4.35	5.62	2.63	5.04	4.41	2.78	2.84	0.06	0.897287	1.000000
K	jcn_only_AA	ANKRD13D	chr11	+	chr11:67057918-67058946	chr11:67057918-67058062		chr11:67058063-67058946	chr11:67058946-67058947		27.27	30.77	9.21	NA	15.79	NA	10.34	0.00	0.00	NA	25.00	NA	16.67	13.33	6.25	NA	31.03	NA	30.77	18.52	0.00	NA	14.81	NA	52.94	14.29	7.69	NA	10.53	NA	7.69	15.79	18.18	NA	25.00	20.00	24.48	13.81	-10.67	0.108949	0.663989
N	alternative_donor	QSOX1	chr1	+	chr1:180135721-180144455;chr1:180135727-180144455	chr1:180137364-180144455		chr1:180135721-180135726;chr1:180135727-180137363	chr1:180135720-180135721;chr1:180135726-180135727		1.24	3.23	1.85	NA	0.00	NA	0.00	1.41	0.33	0.00	0.00	0.00	0.00	0.68	0.75	0.00	0.00	0.00	NA	0.78	2.04	0.00	1.72	0.00	6.25	1.35	1.21	0.00	0.00	0.00	3.12	2.51	9.09	3.70	4.48	1.27	3.23	1.29	-1.94	0.271402	0.645499
K	alternative_first_exon	POLR2H	chr3	+	chr3:184079935-184082753	chr3:184081354-184082753,chr3:184081363-184082753	chr3:184079506-184079934	chr3:184081149-184081353			100.00	97.50	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	97.14	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.75	NA	100.00	92.86	100.00	NA	100.00	NA	100.00	100.00	95.83	NA	100.00	100.00	98.75	100.00	1.25	0.694639	0.782568
K	intron_retention	HARS	chr5	-	chr5:140054719-140056238				chr5:140054718-140054719;chr5:140056238-140056239		12.50	8.00	11.67	6.25	3.70	6.25	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	2.46	0.00	0.00	5.26	5.00	2.22	2.99	5.13	4.41	14.29	9.09	3.70	9.26	5.56	3.51	7.14	3.12	8.51	9.09	5.26	7.02	11.36	6.50	2.67	-3.83	0.721578	1.000000
N	alternative_donor	COA5,EIF2B4	chr2	-	chr2:99220655-99224769;chr2:99220655-99224725	chr2:99220655-99224540		chr2:99224541-99224725;chr2:99224726-99224769	chr2:99224725-99224726;chr2:99224769-99224770		0.00	0.00	4.55	NA	0.00	0.00	2.78	0.00	0.00	0.00	3.85	0.00	0.00	NA	0.00	0.00	0.00	NA	3.45	0.00	0.00	NA	4.00	0.00	4.55	6.67	0.00	NA	0.00	0.00	0.00	2.94	0.00	NA	0.00	0.00	1.39	0.00	-1.39	0.777479	0.917167
K	alternative_first_exon	ARHGDIA	chr17	-	chr17:79827834-79829173	chr17:79827834-79828511	chr17:79829174-79829282	chr17:79828512-79828850			1.64	4.71	1.09	7.14	4.65	8.33	4.72	2.38	2.22	5.67	4.10	4.31	2.77	2.20	5.16	5.68	2.79	3.59	4.76	2.22	6.52	4.76	3.41	5.00	10.64	1.85	2.08	4.27	2.56	4.27	2.47	5.63	3.85	7.78	3.48	7.33	4.71	2.21	-2.50	0.039175	0.151012
N	alternative_acceptor	DRAP1	chr11	+	chr11:65687469-65687886	chr11:65687469-65687813		chr11:65687814-65687886	chr11:65687886-65687887		77.78	87.10	83.33	92.31	80.00	83.33	87.50	81.63	72.73	91.67	85.29	88.24	60.87	76.74	77.78	79.17	86.49	83.33	79.41	76.00	79.31	78.57	81.82	93.33	70.59	80.43	77.78	81.25	84.38	92.00	75.41	72.73	82.86	78.57	83.33	86.36	81.13	77.26	-3.88	0.990153	0.996061
K	alternative_first_exon	CHMP3,RNF103-CHMP3	chr2	-	chr2:86769436-86774576,chr2:86769436-86790215;chr2:86769436-86847452	chr2:86769436-86790426	chr2:86847453-86847592	chr2:86790427-86790602			97.62	100.00	97.22	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	98.00	100.00	94.55	100.00	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	96.30	94.12	100.00	100.00	97.44	100.00	100.00	100.00	0.00	0.388553	0.552368
K	jcn_only_AD	ATG7	chr3	+	chr3:11350336-11350457;chr3:11348535-11350457	chr3:11350087-11350457		chr3:11348535-11350086;chr3:11350087-11350335	chr3:11348534-11348535;chr3:11350086-11350087		0.00	0.00	0.00	NA	NA	NA	5.36	0.00	0.00	3.33	0.00	0.00	4.60	3.12	0.00	0.00	1.92	0.00	NA	0.00	NA	0.00	0.00	6.67	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	2.30	0.00	-2.30	0.272662	0.657607
K	coord_cassette	DHRS4	chr14	+	chr14:24429213-24436419	chr14:24429213-24434970;chr14:24435042-24435140;chr14:24435193-24436419		chr14:24434971-24435041;chr14:24435141-24435192			NA	0.00	NA	NA	0.00	5.88	41.67	55.00	55.56	30.30	43.24	48.00	46.15	57.14	37.50	32.26	29.79	27.27	11.63	20.00	20.00	11.11	18.92	14.29	5.41	NA	43.75	26.67	30.00	31.82	18.18	27.27	12.82	20.00	18.75	33.33	12.23	37.50	25.27	0.225020	0.643829
K	intron_retention	POLA2	chr11	+	chr11:65062124-65063010				chr11:65062123-65062124;chr11:65063010-65063011		0.00	0.00	0.00	NA	0.00	0.00	0.00	7.69	21.43	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	4.55	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.608000	1.000000
K	intron_retention		chr12	+	chr12:57556767-57559587				chr12:57556766-57556767;chr12:57559587-57559588		14.29	4.69	2.78	NA	NA	NA	0.00	0.00	0.00	0.58	0.00	0.39	0.48	0.00	0.00	0.00	0.41	0.32	0.00	0.00	NA	NA	0.00	0.00	11.11	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.92	0.24	0.00	-0.24	0.868437	1.000000
K	intron_retention	OS9	chr12	+	chr12:58112966-58114188				chr12:58112965-58112966;chr12:58114188-58114189		2.37	3.72	4.80	2.11	1.00	1.83	0.56	0.51	0.78	0.00	0.53	1.46	0.47	1.65	1.12	0.61	1.06	1.24	0.72	2.75	1.40	2.42	0.86	4.41	3.11	3.42	2.88	3.76	2.71	2.67	3.69	5.81	1.99	3.43	2.67	3.79	1.35	2.56	1.21	0.810627	1.000000
N	jcn_only_AD	CHMP5	chr9	+	chr9:33265168-33266007;chr9:33265794-33266007;chr9:33265146-33266007	chr9:33265825-33266007		chr9:33265146-33265167;chr9:33265168-33265793;chr9:33265794-33265824	chr9:33265145-33265146;chr9:33265167-33265168;chr9:33265793-33265794		5.02	0.00	0.00	0.00	0.00	NA	0.00	27.27	9.83	1.11	0.00	8.33	0.00	24.57	16.05	1.49	0.00	9.16	NA	9.89	0.00	0.00	0.00	5.61	NA	15.96	0.00	0.00	0.00	10.11	8.62	1.02	0.00	0.00	0.00	7.26	0.00	12.93	12.93	0.009160	0.237005
K	intron_retention	CD33	chr19	+	chr19:51738932-51742772				chr19:51738931-51738932;chr19:51742772-51742773		4.65	5.78	6.41	0.00	4.84	0.00	0.00	0.00	0.00	0.00	1.98	0.00	0.96	NA	0.00	2.94	1.23	0.00	5.68	6.90	8.20	0.00	3.12	0.00	5.56	7.41	8.60	11.76	5.97	4.35	4.00	1.79	2.17	0.00	2.78	1.27	3.86	4.65	0.79	0.625881	1.000000
N	cassette	TYMP	chr22	-	chr22:50967768-50968332;chr22:50962854-50968332;chr22:50965979-50968332;chr22:50965168-50968332;chr22:50965713-50968332;chr22:50966147-50968332;chr22:50967040-50968332	chr22:50967768-50967924,chr22:50966147-50967924,chr22:50967040-50967924,chr22:50965168-50967924,chr22:50965979-50967924,chr22:50965713-50967924,chr22:50962854-50967924;chr22:50968149-50968332		chr22:50967925-50968148			87.23	49.19	75.50	52.17	45.80	42.59	100.00	98.66	98.97	99.19	98.04	98.74	99.47	96.81	97.08	97.79	96.86	98.63	70.21	92.12	84.86	81.72	71.43	88.48	65.09	95.64	89.85	93.37	85.71	92.92	85.98	88.20	54.67	78.45	82.07	86.11	67.65	93.88	26.23	0.080339	0.641134
K	intron_retention	STAT5A	chr17	+	chr17:40461503-40462524				chr17:40461502-40461503;chr17:40462524-40462525		3.92	9.68	5.05	3.95	6.82	3.38	0.00	0.00	0.81	0.35	0.00	0.71	1.56	1.28	1.21	0.52	2.44	1.14	7.89	5.13	1.45	2.30	6.90	5.11	10.26	4.00	7.69	3.64	2.08	1.74	2.27	4.49	4.44	6.78	6.25	4.22	6.17	3.09	-3.07	0.481173	1.000000
K	intron_retention		chr19	-	chr19:36398260-36398347				chr19:36398259-36398260;chr19:36398347-36398348		60.20	55.80	67.02	45.45	68.20	39.53	16.67	15.38	NA	NA	45.45	NA	21.43	35.71	NA	18.18	NA	NA	57.92	59.26	59.77	48.84	68.15	35.00	74.47	61.64	75.00	66.67	74.68	48.28	62.79	67.36	58.33	54.55	51.11	32.56	56.86	59.73	2.87	0.987240	1.000000
N	alternative_acceptor	ACIN1	chr14	-	chr14:23532697-23533313	chr14:23532787-23533313		chr14:23532697-23532786	chr14:23532696-23532697		97.44	100.00	99.14	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	98.31	100.00	100.00	100.00	100.00	100.00	100.00	95.31	98.26	94.44	98.80	100.00	100.00	100.00	99.42	-0.58	0.703953	0.889704
K	intron_retention	ADCY7	chr16	+	chr16:50347974-50348202				chr16:50347973-50347974;chr16:50348202-50348203		2.94	29.17	18.52	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.38	2.33	NA	14.29	8.77	3.23	NA	1.12	15.00	10.00	3.23	0.00	9.68	25.00	NA	9.68	5.88	1.27	7.69	1.73	-5.96	0.526108	1.000000
K	intron_retention	NFKBIA	chr14	-	chr14:35871267-35871599				chr14:35871266-35871267;chr14:35871599-35871600		5.80	5.83	5.88	2.90	2.93	2.47	0.58	0.68	0.53	0.35	0.41	0.27	0.00	0.50	0.95	0.65	0.43	0.42	5.99	5.59	5.30	5.09	4.44	3.90	8.11	4.58	4.28	2.53	2.58	2.06	10.12	9.70	12.19	4.64	6.47	3.91	5.91	5.08	-0.83	0.679320	1.000000
K	alternative_acceptor	USF2	chr19	+	chr19:35769696-35769872	chr19:35769696-35769848		chr19:35769849-35769872	chr19:35769872-35769873		95.24	91.92	95.00	93.98	95.78	92.98	95.89	90.72	95.45	94.86	94.56	95.04	94.71	91.67	91.46	93.33	94.14	96.47	93.64	97.00	93.80	94.23	97.39	94.44	95.12	92.47	95.45	95.00	94.21	95.00	96.04	94.51	96.51	97.37	96.35	95.14	94.91	93.85	-1.06	0.551129	0.824249
N	alternative_acceptor	SRRM2	chr16	+	chr16:2819286-2820352;chr16:2819286-2820361;chr16:2819286-2819628	chr16:2819286-2819862		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		18.49	22.73	16.55	21.36	12.82	28.77	8.89	2.78	1.82	2.38	7.41	4.55	14.06	7.69	10.81	18.52	13.64	20.00	12.50	5.81	3.42	4.49	17.22	27.66	14.81	12.16	13.38	30.30	22.69	29.73	19.05	14.75	10.17	19.84	28.45	32.41	13.28	9.93	-3.36	0.421682	0.733210
K	alternative_acceptor	EXOSC10	chr1	-	chr1:11131031-11132143	chr1:11131046-11132143		chr1:11131031-11131045	chr1:11131030-11131031		0.00	1.82	2.08	0.00	3.90	3.23	6.67	4.55	4.17	0.00	5.41	4.55	6.06	3.57	2.56	0.00	5.88	4.17	4.00	2.27	1.67	3.57	1.54	2.70	0.00	2.86	1.89	4.88	3.64	2.08	3.12	3.77	2.38	3.70	3.28	3.39	3.19	2.99	-0.20	0.551951	0.824386
N	alternative_donor	ANPEP	chr15	-	chr15:90347849-90348176;chr15:90347849-90348352	chr15:90347849-90348308		chr15:90348177-90348308;chr15:90348309-90348352	chr15:90348308-90348309;chr15:90348352-90348353		98.79	97.62	97.13	95.24	96.67	80.00	100.00	99.68	99.80	98.89	99.29	98.01	99.25	99.55	99.21	97.02	98.50	98.43	NA	97.87	100.00	93.72	95.31	91.57	95.83	98.68	97.21	96.07	95.58	96.32	99.55	97.90	NA	92.82	95.12	92.15	98.44	99.17	0.73	0.438032	0.698333
K	intron_retention	GPR162	chr12	+	chr12:6936020-6936166				chr12:6936019-6936020;chr12:6936166-6936167		96.67	100.00	87.10	NA	100.00	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	93.55	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.860799	1.000000
N	alternative_acceptor		chr6	+	chr6:25973514-25983395;chr6:25973514-25975017;chr6:25973514-25982028;chr6:25973514-25982025;chr6:25973514-25975032;chr6:25973514-25975130	chr6:25973514-25983391		chr6:25975018-25975032;chr6:25975033-25975130;chr6:25975131-25982025;chr6:25982026-25982028;chr6:25982029-25983391;chr6:25983392-25983395	chr6:25975032-25975033;chr6:25975130-25975131;chr6:25982025-25982026;chr6:25982028-25982029;chr6:25983391-25983392;chr6:25983395-25983396		94.59	100.00	94.59	NA	NA	NA	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.67	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	90.91	95.83	100.00	100.00	0.00	0.992458	0.996793
K	intron_retention	NRP2	chr2	+	chr2:206608277-206610469				chr2:206608276-206608277;chr2:206610469-206610470		9.38	38.10	3.06	84.62	57.14	90.62	1.16	0.00	0.00	0.66	1.34	0.33	0.00	1.25	0.00	1.35	0.54	1.08	NA	2.22	22.22	4.26	6.98	2.14	14.29	2.20	0.00	5.88	5.00	10.87	11.29	4.55	83.33	5.95	4.35	3.02	14.29	2.21	-12.08	0.743795	1.000000
K	intron_retention	RPS24	chr10	+	chr10:79797063-79800372				chr10:79797062-79797063;chr10:79800372-79800373		3.51	1.53	6.59	4.59	2.87	4.62	0.27	0.00	1.15	0.32	0.79	0.00	0.70	0.00	1.08	2.06	1.43	0.00	2.80	3.17	1.07	8.80	4.67	7.02	0.70	4.26	3.49	1.58	2.46	1.82	4.00	5.13	2.49	1.91	5.44	2.45	1.11	3.34	2.22	0.752398	1.000000
N	jcn_only_AA	SMG9	chr19	-	chr19:44235264-44237009;chr19:44235827-44237009;chr19:44235494-44237009;chr19:44233199-44237009	chr19:44233202-44237009		chr19:44233199-44233201;chr19:44233202-44235263;chr19:44235264-44235493;chr19:44235494-44235826	chr19:44233198-44233199;chr19:44233201-44233202;chr19:44235263-44235264;chr19:44235493-44235494		0.00	2.13	0.00	2.82	0.00	0.00	0.00	0.00	3.33	0.00	0.00	4.65	0.00	0.00	5.26	1.85	0.00	4.35	0.00	0.00	0.00	5.56	0.00	2.17	0.00	0.00	0.00	0.00	1.39	2.15	0.00	3.12	3.08	3.23	0.00	0.00	0.00	0.00	0.00	0.183447	0.663989
K	intron_retention	PTOV1	chr19	+	chr19:50358335-50360231				chr19:50358334-50358335;chr19:50360231-50360232		20.59	26.67	26.09	25.00	20.93	15.38	1.85	0.00	5.56	0.00	2.86	0.00	3.57	0.00	12.50	0.00	2.38	0.00	38.24	14.29	25.64	8.70	21.15	13.64	50.00	18.75	12.73	17.65	22.86	8.33	31.25	35.00	36.36	30.43	29.03	8.82	31.52	16.52	-15.00	0.632464	1.000000
N	intron_retention		chr9	+	chr9:131389778-131392599				chr9:131389777-131389778;chr9:131392599-131392600		13.64	4.55	10.91	NA	4.17	NA	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	NA	9.09	5.56	1.54	9.09	5.13	NA	0.00	5.88	2.35	NA	3.33	NA	16.67	5.56	0.00	3.70	7.14	3.23	0.00	5.72	5.72	0.573899	1.000000
K	intron_retention	PACSIN2	chr22	-	chr22:43273017-43275053				chr22:43273016-43273017;chr22:43275053-43275054		3.92	0.00	3.39	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.43	1.56	0.00	0.00	2.94	4.76	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	1.72	0.00	5.66	0.00	0.00	0.00	0.594508	1.000000
K	alternative_acceptor	GPR137	chr11	+	chr11:64056194-64056614	chr11:64056194-64056508		chr11:64056509-64056614	chr11:64056614-64056615		78.57	85.19	84.85	72.22	81.08	90.91	85.00	88.89	90.62	80.00	69.57	63.64	100.00	90.00	91.18	83.33	72.22	NA	82.26	78.95	80.36	83.33	84.62	100.00	80.60	87.50	79.41	75.00	73.33	85.00	84.00	75.00	82.98	83.33	82.35	81.82	83.99	85.75	1.76	0.710599	0.890280
K	jcn_only_AD	CD163,NAP1L1	chr12	-	chr12:76468020-76478346	chr12:76468020-76477612		chr12:76477613-76478346	chr12:76478346-76478347		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.51	0.00	0.68	0.36	0.00	0.00	0.80	0.00	0.00	7.69	0.00	0.00	1.02	0.00	2.25	0.00	0.00	0.00	1.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	0.339473	0.657607
K	jcn_only_AA	FLII	chr17	-	chr17:18157934-18158082	chr17:18157997-18158082		chr17:18157934-18157996	chr17:18157933-18157934		86.67	100.00	100.00	NA	NA	NA	94.93	95.28	92.50	93.79	94.67	93.23	93.29	92.47	95.45	94.44	95.15	96.58	NA	96.15	NA	100.00	100.00	100.00	100.00	92.86	89.80	100.00	100.00	100.00	89.47	100.00	NA	100.00	100.00	100.00	97.47	92.66	-4.80	0.068515	0.663989
N	alternative_donor	MS4A6A	chr11	-	chr11:59949215-59950538;chr11:59949215-59949969;chr11:59949215-59950450;chr11:59949215-59949844;chr11:59949215-59949790	chr11:59949215-59950608		chr11:59949791-59949844;chr11:59949845-59949969;chr11:59949970-59950450;chr11:59950451-59950538;chr11:59950539-59950608	chr11:59949844-59949845;chr11:59949969-59949970;chr11:59950450-59950451;chr11:59950538-59950539;chr11:59950608-59950609		0.00	0.00	0.00	0.00	3.45	NA	5.39	11.40	NA	4.23	7.53	5.10	2.61	2.94	NA	3.08	5.22	5.81	0.00	0.00	NA	4.55	4.76	4.35	NA	8.57	NA	2.63	3.26	8.33	NA	NA	0.00	1.89	4.00	4.44	0.00	2.94	2.94	0.289368	0.650093
N	jcn_only_AA	IMPDH2	chr3	-	chr3:49061984-49062091	chr3:49062012-49062091		chr3:49061984-49062011	chr3:49061983-49061984		100.00	99.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	98.37	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	100.00	100.00	99.70	100.00	0.30	0.463941	0.725885
N	jcn_only_AD	PARL	chr3	-	chr3:183562115-183574219;chr3:183562115-183580484;chr3:183562115-183595939	chr3:183562115-183580540		chr3:183574220-183580484;chr3:183580485-183580540;chr3:183580541-183595939	chr3:183580484-183580485;chr3:183580540-183580541;chr3:183595939-183595940		96.15	88.41	94.83	100.00	96.49	NA	79.49	92.31	88.00	97.30	90.16	88.00	81.91	NA	90.91	98.00	94.37	95.00	100.00	91.67	94.12	96.30	90.14	93.94	100.00	100.00	87.27	97.06	88.24	96.00	100.00	89.19	91.43	91.11	92.59	92.11	89.92	96.15	6.23	0.186157	0.657607
K	alternative_acceptor	REXO1	chr19	-	chr19:1817329-1817705	chr19:1817458-1817705		chr19:1817329-1817457	chr19:1817328-1817329		6.25	20.00	4.00	NA	NA	NA	0.00	5.88	0.00	0.00	7.14	0.00	0.00	0.00	4.55	0.00	5.26	0.00	NA	6.67	0.00	0.00	0.00	9.09	NA	0.00	4.17	6.67	NA	0.00	9.52	0.00	0.00	9.52	5.88	8.82	0.00	6.06	6.06	0.960243	0.990505
K	intron_retention	RPS23	chr5	-	chr5:81571954-81572269				chr5:81571953-81571954;chr5:81572269-81572270		68.00	66.18	61.54	72.00	70.13	78.91	60.25	54.84	61.17	35.44	35.13	37.96	57.43	61.11	63.95	62.04	38.13	38.24	71.02	72.00	65.99	60.84	59.74	53.77	67.51	62.50	62.71	60.94	63.42	58.70	64.71	62.16	68.96	65.82	61.37	64.87	66.84	63.60	-3.24	0.870636	1.000000
K	cassette	STRN4	chr19	-	chr19:47236494-47240079	chr19:47236494-47237072;chr19:47237133-47240079		chr19:47237073-47237132			0.00	17.65	2.04	NA	NA	NA	2.44	0.00	0.00	0.00	0.00	4.76	3.45	1.85	0.00	3.03	1.79	0.00	NA	0.00	NA	0.00	7.14	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	2.94	NA	7.14	3.12	0.00	2.95	0.00	-2.95	0.256559	0.709176
K	alternative_acceptor	PLRG1	chr4	-	chr4:155459235-155460256	chr4:155459261-155460256		chr4:155459235-155459260	chr4:155459234-155459235		100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	NA	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	alternative_acceptor	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10942979;chr19:10941055-10941653	chr19:10941055-10943667		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		0.00	0.00	2.68	0.00	0.00	2.70	0.00	0.00	0.00	2.56	4.84	0.00	0.00	0.00	0.00	5.77	0.00	0.00	2.86	2.68	2.13	0.00	2.50	0.00	2.36	0.00	0.00	1.96	0.00	0.00	2.94	3.33	2.72	5.26	1.52	0.00	1.18	0.00	-1.18	0.655393	0.874938
N	jcn_only_AA	ABCC3	chr17	+	chr17:48765092-48765786;chr17:48765092-48765771	chr17:48765092-48768452		chr17:48765772-48765786;chr17:48765787-48768452	chr17:48765786-48765787;chr17:48768452-48768453		95.83	100.00	96.32	100.00	100.00	93.33	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	96.61	100.00	100.00	96.15	100.00	97.22	96.88	100.00	98.77	100.00	93.88	97.86	98.51	100.00	98.18	100.00	100.00	96.53	-3.47	0.098462	0.663989
K	intron_retention		chr20	+	chr20:3897698-3899317				chr20:3897697-3897698;chr20:3899317-3899318		4.65	7.14	7.27	4.76	4.35	5.88	0.00	0.00	1.56	0.00	2.70	3.85	2.50	3.51	1.82	2.50	3.12	2.04	11.54	12.00	8.51	12.50	11.54	10.00	15.79	4.23	5.56	8.57	2.50	8.82	13.46	6.45	5.00	8.51	6.52	5.61	6.07	4.44	-1.63	0.573496	1.000000
N	cassette	MFSD12	chr19	-	chr19:3538709-3544806;chr19:3538755-3544806	chr19:3538755-3542773,chr19:3538709-3542773;chr19:3542976-3544806		chr19:3542774-3542975			32.56	14.29	36.36	21.35	14.81	13.85	40.85	36.11	30.30	24.19	27.27	32.43	43.24	34.38	29.63	40.00	30.30	37.50	23.08	43.64	16.23	38.89	25.58	32.35	10.98	23.38	24.39	26.67	17.33	17.95	20.59	23.17	10.53	30.43	27.14	21.00	18.68	33.47	14.79	0.288019	0.709176
N	cassette	GMFG	chr19	-	chr19:39820267-39825900;chr19:39819714-39825900;chr19:39819189-39825900;chr19:39820267-39826613;chr19:39820267-39826074	chr19:39819714-39823716,chr19:39820267-39823716,chr19:39819189-39823716;chr19:39823767-39826613,chr19:39823767-39825900,chr19:39823767-39826074		chr19:39823717-39823766			96.39	95.16	97.91	97.61	96.83	96.30	99.73	97.70	100.00	98.63	98.19	98.71	97.79	95.63	100.00	98.25	98.50	99.47	95.33	96.20	96.36	99.25	97.81	97.87	92.81	91.61	96.62	97.12	97.47	98.18	95.80	95.86	94.70	95.56	98.94	97.62	95.25	96.00	0.75	0.786288	0.936203
K	jcn_only_AA	PSMD9	chr12	+	chr12:122341014-122353764;chr12:122341014-122348847	chr12:122341014-122353761					100.00	95.08	95.35	95.89	98.18	96.10	95.92	100.00	96.88	95.45	92.42	96.23	92.42	92.31	96.81	91.57	92.75	90.24	94.44	100.00	94.67	96.88	94.25	91.84	93.65	100.00	95.45	90.48	94.25	92.16	100.00	100.00	94.81	93.33	98.33	96.77	94.62	100.00	5.38	0.017889	0.537091
N	alternative_donor	TCF25	chr16	+	chr16:89976760-89976998;chr16:89975516-89976998;chr16:89976765-89976998;chr16:89976334-89976998	chr16:89975492-89976998		chr16:89975492-89975515;chr16:89975516-89976333;chr16:89976334-89976759;chr16:89976760-89976764	chr16:89975491-89975492;chr16:89975515-89975516;chr16:89976333-89976334;chr16:89976759-89976760		21.43	6.90	13.33	27.78	15.00	21.74	NA	NA	NA	NA	NA	NA	NA	NA	30.00	40.00	NA	NA	16.67	18.18	20.00	NA	14.29	NA	16.67	0.00	17.65	NA	26.67	7.14	0.00	15.00	11.76	0.00	0.00	4.35	14.21	9.09	-5.12	0.644478	0.839864
N	jcn_only_AA	MYO9B	chr19	+	chr19:17322584-17322868;chr19:17322584-17325268;chr19:17322584-17322703	chr19:17322584-17322809		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr3	-	chr3:52265556-52265959				chr3:52265555-52265556;chr3:52265959-52265960		6.45	0.00	5.19	0.00	0.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	2.06	0.00	2.65	0.00	0.00	0.00	4.80	2.63	0.00	NA	3.03	5.05	3.17	1.96	2.65	0.00	0.00	1.51	1.51	0.466153	1.000000
N	alternative_donor	PSTPIP1	chr15	+	chr15:77324770-77325202;chr15:77324741-77325202	chr15:77324736-77325202		chr15:77324736-77324740;chr15:77324741-77324769	chr15:77324735-77324736;chr15:77324740-77324741		82.14	89.38	81.58	93.75	89.80	95.24	96.49	NA	100.00	100.00	97.56	NA	94.64	NA	100.00	NA	100.00	NA	95.14	78.57	94.81	NA	85.71	NA	88.60	92.31	86.96	NA	83.33	NA	92.31	89.47	91.41	94.74	87.10	100.00	93.03	87.22	-5.80	0.173676	0.563271
K	alternative_acceptor	NFKB2	chr10	+	chr10:104161917-104162011	chr10:104161917-104162008		chr10:104162009-104162011	chr10:104162011-104162012		18.49	25.64	22.75	25.14	21.90	24.05	24.49	27.78	26.10	27.68	26.87	29.17	36.84	25.00	28.82	31.70	28.57	29.02	19.65	21.39	20.61	28.74	21.11	25.13	17.24	23.38	24.67	27.17	28.28	27.54	25.00	22.33	17.47	23.60	24.35	25.50	22.07	24.19	2.12	0.988724	0.995608
N	alternative_acceptor	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139921867-139928490;chr5:139921867-139924405	chr5:139921867-139927230		chr5:139924406-139927230;chr5:139927231-139928490	chr5:139927230-139927231;chr5:139928490-139928491		0.00	3.12	0.00	0.00	0.00	0.00	6.67	0.00	5.00	6.67	7.14	NA	6.67	0.00	4.00	6.67	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	4.17	3.56	0.00	-3.56	0.038627	0.560254
K	cassette	RAB31	chr18	+	chr18:9708442-9792150	chr18:9708442-9775274;chr18:9775355-9792150		chr18:9775275-9775354			98.94	100.00	93.97	NA	100.00	NA	100.00	99.44	100.00	100.00	100.00	100.00	99.26	100.00	100.00	98.78	98.95	100.00	NA	98.86	95.83	100.00	100.00	100.00	NA	99.05	96.92	100.00	100.00	100.00	100.00	97.26	100.00	97.67	98.72	100.00	100.00	99.25	-0.75	0.162403	0.709176
K	jcn_only_AD	EXOSC1	chr10	-	chr10:99197508-99198426	chr10:99197508-99198419		chr10:99198420-99198426	chr10:99198426-99198427		0.00	4.76	8.33	8.33	4.44	12.50	7.69	0.00	4.17	4.76	0.00	0.00	3.23	9.09	3.70	4.55	0.00	0.00	6.06	0.00	2.50	16.67	5.88	0.00	0.00	15.38	2.86	6.25	3.57	11.76	7.14	10.00	6.25	0.00	4.00	0.00	5.41	3.57	-1.84	0.837709	0.926053
K	cassette	FMNL1	chr17	+	chr17:43322784-43323244	chr17:43322784-43322998;chr17:43323101-43323244		chr17:43322999-43323100			97.49	91.89	94.61	88.00	90.51	83.33	100.00	100.00	98.77	94.00	96.79	100.00	100.00	99.42	99.04	96.19	97.79	98.28	95.57	97.11	97.29	90.91	88.82	94.44	84.54	97.82	95.94	96.30	96.23	96.88	94.88	94.76	86.56	90.71	92.83	94.62	93.73	97.66	3.93	0.146981	0.709176
K	jcn_only_AA	NOSIP	chr19	-	chr19:50059915-50060131;chr19:50059911-50060131	chr19:50059994-50060131		chr19:50059911-50059914;chr19:50059915-50059993	chr19:50059910-50059911;chr19:50059914-50059915		93.38	100.00	100.00	100.00	97.87	97.87	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.14	100.00	97.95	100.00	100.00	100.00	100.00	100.00	99.07	100.00	98.00	100.00	97.11	98.00	97.67	100.00	100.00	100.00	100.00	100.00	0.00	0.484885	0.743002
K	alternative_last_exon	IL12RB1	chr19	-	chr19:18180524-18182921	chr19:18182144-18182921	chr19:18180356-18180523	chr19:18181372-18182143			53.33	90.00	58.33	NA	NA	NA	70.00	40.00	54.55	NA	75.00	NA	71.43	58.33	40.00	NA	66.67	NA	NA	NA	NA	NA	91.67	NA	NA	53.33	NA	NA	NA	NA	53.85	45.83	90.00	80.00	63.64	73.33	80.72	53.33	-27.39	0.007196	0.157460
K	alternative_first_exon	GSN	chr9	+	chr9:124032335-124043747,chr9:124029804-124043747,chr9:124043502-124043747,chr9:124034142-124043747;chr9:124028033-124043747	chr9:124030498-124043747	chr9:124027939-124028032	chr9:124030380-124030497			94.12	100.00	97.44	NA	94.44	NA	95.98	93.10	91.80	97.37	94.81	96.48	95.24	91.67	98.61	100.00	94.06	98.11	100.00	93.33	100.00	100.00	96.62	98.39	82.35	63.16	98.28	96.15	93.91	100.00	94.44	95.74	100.00	96.34	95.28	93.81	97.99	93.22	-4.78	0.242441	0.452670
N	alternative_acceptor	CDC34	chr19	+	chr19:537148-541345;chr19:537148-541338;chr19:537148-538677	chr19:537148-541342		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		3.85	2.38	7.14	5.26	6.25	4.17	5.56	9.09	5.88	5.00	10.00	NA	11.11	0.00	5.00	4.55	13.04	NA	3.70	0.00	0.00	5.88	3.85	NA	7.89	0.00	3.85	6.25	14.29	7.69	5.26	4.00	0.00	0.00	5.88	4.00	4.63	1.93	-2.71	0.374810	0.709013
N	alternative_donor	RPL41	chr12	+	chr12:56510584-56510972;chr12:56510648-56510972;chr12:56510614-56510972	chr12:56510715-56510972		chr12:56510584-56510613;chr12:56510614-56510647;chr12:56510648-56510714	chr12:56510583-56510584;chr12:56510613-56510614;chr12:56510647-56510648		2.83	1.35	1.25	1.05	0.77	0.79	0.11	0.12	0.17	0.18	0.08	0.04	0.10	0.12	0.20	0.22	0.08	0.04	1.28	3.72	1.03	2.28	1.31	1.69	1.02	1.33	1.01	0.50	0.42	0.36	8.15	4.38	2.26	1.36	1.42	1.27	1.15	2.08	0.93	0.237356	0.609471
N	jcn_only_AD		chr1	-	chr1:220325107-220326601	chr1:220325107-220326526		chr1:220326527-220326601	chr1:220326601-220326602		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	90.91	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	NAPA	chr19	-	chr19:47995377-47996217				chr19:47995376-47995377;chr19:47996217-47996218		6.08	4.35	10.99	4.11	7.14	7.69	0.56	0.50	0.55	1.41	0.94	1.77	0.00	1.16	1.85	0.89	0.43	0.68	8.16	4.32	2.33	4.62	9.52	6.01	9.30	5.02	9.73	4.93	4.73	4.71	4.37	6.90	10.00	9.39	4.28	8.05	6.25	4.35	-1.91	0.490724	1.000000
N	jcn_only_AA	SLC39A11	chr17	-	chr17:70721976-70732788;chr17:70725143-70732788;chr17:70691206-70732788;chr17:70709121-70732788	chr17:70645408-70732788		chr17:70645408-70691205;chr17:70691206-70709120;chr17:70709121-70721975;chr17:70721976-70725142	chr17:70645407-70645408;chr17:70691205-70691206;chr17:70709120-70709121;chr17:70721975-70721976		97.22	100.00	100.00	NA	100.00	NA	96.92	86.36	94.59	84.38	89.36	82.14	94.59	78.57	96.67	86.36	100.00	85.00	NA	97.06	92.31	NA	100.00	NA	100.00	100.00	100.00	NA	NA	90.00	95.45	100.00	94.12	95.24	93.10	93.55	96.92	96.25	-0.67	0.237977	0.663989
K	cassette	ARHGEF1	chr19	+	chr19:42400556-42402590	chr19:42400556-42402094;chr19:42402263-42402590		chr19:42402095-42402262			7.02	5.56	13.73	NA	18.18	NA	30.77	13.51	13.16	NA	54.17	NA	40.48	13.21	20.59	72.73	66.67	NA	25.00	11.11	8.00	NA	31.58	NA	26.67	20.69	18.75	NA	50.00	NA	8.70	11.11	25.00	25.00	24.32	28.12	25.84	12.16	-13.68	0.036105	0.477876
N	jcn_only_AD	TRPM2	chr21	+	chr21:45838921-45843527;chr21:45838914-45843527;chr21:45838439-45843527	chr21:45842303-45843527					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.39	2.56	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	1.67	3.19	0.00	0.00	0.00	0.00	0.698844	0.845069
N	alternative_acceptor	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161954771-161967614;chr1:161966285-161967614;chr1:161948463-161967614	chr1:161962050-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		0.00	0.00	0.62	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	2.22	0.00	0.00	NA	0.00	0.00	5.80	0.00	0.44	0.00	0.00	NA	0.00	0.00	2.78	0.00	0.00	0.00	1.11	0.00	-1.11	0.115504	0.605363
K	intron_retention		chr11	+	chr11:5718574-5719544				chr11:5718573-5718574;chr11:5719544-5719545		28.14	38.00	30.26	31.58	16.67	32.62	3.53	4.11	3.32	3.08	2.22	5.51	5.41	5.94	9.19	8.96	1.41	3.59	23.53	31.22	25.58	30.30	11.11	33.19	55.56	29.90	25.33	43.06	0.00	30.77	26.12	28.46	25.00	42.86	24.53	33.33	24.27	27.13	2.87	0.500429	1.000000
K	intron_retention		chr19	+	chr19:39963971-39964055				chr19:39963970-39963971;chr19:39964055-39964056		1.75	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.89	3.55	1.72	0.00	1.09	0.83	0.00	0.88	0.88	0.388743	1.000000
N	alternative_acceptor	FRA10AC1	chr10	-	chr10:95435459-95436409;chr10:95431847-95436409	chr10:95430606-95436409		chr10:95430606-95431846;chr10:95431847-95435458	chr10:95430605-95430606;chr10:95431846-95431847		88.89	98.72	89.47	100.00	96.97	100.00	100.00	NA	90.00	NA	90.00	NA	92.86	NA	NA	NA	NA	NA	95.83	94.74	95.56	NA	86.67	NA	98.36	92.31	92.59	NA	95.00	100.00	88.24	94.44	98.80	87.50	89.29	88.24	98.54	90.60	-7.94	0.014520	0.497484
N	jcn_only_AA	DR1,SRP9	chr1	+	chr1:93812423-93819464	chr1:93812423-93815475		chr1:93815476-93819464	chr1:93819464-93819465		0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.363217	0.663989
K	alternative_first_exon	APOC1	chr19	+	chr19:45417747-45418128	chr19:45417991-45418128	chr19:45417504-45417746	chr19:45417929-45417990			100.00	97.41	97.30	96.15	96.92	97.78	99.20	97.66	99.59	97.19	97.50	97.84	98.17	100.00	100.00	95.65	98.11	96.25	97.41	100.00	99.57	95.45	95.74	96.15	99.55	96.15	93.88	98.51	95.98	96.55	100.00	97.40	97.97	98.70	98.89	98.99	98.07	100.00	1.93	0.404289	0.559301
K	jcn_only_AA	MAP7D1	chr1	+	chr1:36643803-36644046;chr1:36643803-36644071	chr1:36643803-36644019		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		76.92	67.65	70.49	84.21	64.44	NA	74.36	79.63	78.79	65.91	87.23	73.33	78.72	77.97	64.86	77.27	85.00	89.47	85.71	86.49	80.39	91.67	82.19	80.00	100.00	68.42	74.58	63.16	88.46	85.19	88.24	82.35	76.67	86.96	82.46	89.13	77.69	78.80	1.11	0.871326	0.950693
K	jcn_only_AA	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481235-7481418;chr17:7481235-7481437;chr17:7481235-7481482	chr17:7481235-7481544		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		3.73	4.19	5.30	2.52	3.35	3.64	0.00	0.00	1.16	1.02	0.91	0.55	1.22	0.62	0.61	1.63	0.71	0.71	10.35	7.61	5.83	3.85	4.11	3.36	5.23	2.42	2.21	2.20	3.48	3.09	9.97	10.43	10.79	3.04	2.99	2.46	4.71	3.08	-1.64	0.624554	0.833737
N	alternative_acceptor	VNN2	chr6	-	chr6:133065631-133070833	chr6:133070506-133070833		chr6:133065631-133070505	chr6:133065630-133065631		0.98	2.22	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	2.83	1.64	8.51	1.64	1.59	1.15	2.22	0.00	-2.22	0.179782	0.660713
K	jcn_only_AD	NCOR2	chr12	-	chr12:124810130-124810736	chr12:124810130-124810725		chr12:124810726-124810736	chr12:124810736-124810737		6.12	5.80	0.00	6.45	1.20	0.00	0.00	9.68	0.00	4.64	3.87	2.47	2.82	0.00	8.00	3.60	2.14	2.38	0.00	0.00	0.00	4.62	1.99	5.17	0.00	2.08	4.44	3.33	3.03	2.78	0.00	0.00	2.78	2.17	3.03	4.00	1.39	1.04	-0.35	0.587931	0.794575
N	cassette	IFNGR2	chr21	+	chr21:34775923-34787194;chr21:34775923-34783750	chr21:34775923-34783141;chr21:34783199-34783750,chr21:34783199-34787194		chr21:34783142-34783198			2.36	0.00	2.94	6.25	7.89	NA	5.08	2.81	2.22	8.43	5.68	7.14	3.50	4.93	4.81	7.88	4.78	6.86	0.00	1.70	2.63	6.10	7.66	7.64	0.00	3.45	3.26	6.67	11.11	8.14	3.45	4.41	NA	5.94	6.04	5.17	0.00	3.13	3.13	0.281724	0.709176
K	intron_retention	C18orf8	chr18	+	chr18:21109677-21109991				chr18:21109676-21109677;chr18:21109991-21109992		8.93	18.52	13.64	0.00	6.45	0.00	13.04	5.88	3.03	20.00	20.00	4.00	8.33	5.41	0.00	13.79	13.64	0.00	4.76	9.52	3.03	15.62	6.90	11.43	NA	9.62	6.12	13.33	14.81	3.12	5.49	7.45	0.00	19.05	5.88	11.84	8.33	7.40	-0.93	0.969649	1.000000
K	jcn_only_AA	SLC27A3	chr1	+	chr1:153751950-153752406	chr1:153751950-153752301		chr1:153752302-153752406	chr1:153752406-153752407		88.24	90.91	75.00	NA	93.10	80.00	93.94	87.32	93.33	90.91	92.86	97.56	84.21	91.67	90.00	NA	100.00	85.00	94.29	92.00	87.50	NA	92.00	NA	87.18	90.24	100.00	NA	92.00	94.12	75.00	NA	84.38	NA	100.00	100.00	89.05	89.24	0.19	0.598698	0.813353
N	alternative_donor	IGFLR1	chr19	-	chr19:36232125-36233296;chr19:36232125-36233290;chr19:36232125-36233167	chr19:36232125-36232383		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		7.84	3.52	13.70	2.17	4.80	0.00	2.60	0.00	3.23	0.00	5.26	0.00	4.60	5.00	10.26	3.03	4.35	3.57	1.48	7.55	4.76	1.54	5.45	2.74	4.49	5.41	11.76	5.56	6.58	4.05	1.41	7.48	1.00	3.70	9.20	5.32	3.06	5.21	2.15	0.308541	0.650093
K	alternative_acceptor	EIF3E	chr8	-	chr8:109241425-109247226	chr8:109245902-109247226		chr8:109241425-109245901	chr8:109241424-109241425		3.03	6.06	1.01	12.50	6.15	NA	0.97	2.44	1.09	1.89	1.29	1.88	1.59	2.13	1.75	2.91	2.15	2.50	12.50	0.00	3.33	2.47	3.26	3.66	NA	0.00	1.12	1.89	2.50	4.08	0.00	1.37	14.29	2.22	2.20	1.71	6.06	1.06	-4.99	0.100477	0.598353
N	jcn_only_AA	TRPM2	chr21	+	chr21:45838439-45843527	chr21:45838439-45838830		chr21:45838831-45843527	chr21:45843527-45843528		0.00	0.00	0.00	10.00	3.45	NA	5.17	0.00	0.00	NA	0.00	NA	1.39	5.00	NA	0.00	0.00	NA	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	7.69	0.00	0.00	5.08	3.23	0.00	0.00	1.28	1.28	0.379977	0.663989
K	jcn_only_AA	MAN1B1	chr9	+	chr9:139982636-139983404	chr9:139982636-139983320		chr9:139983321-139983404	chr9:139983404-139983405		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	89.66	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	ENTPD4	chr8	-	chr8:23290668-23291829				chr8:23290667-23290668;chr8:23291829-23291830		13.04	0.00	6.52	NA	0.00	0.00	0.00	0.00	4.35	6.25	0.00	NA	3.85	0.00	2.78	NA	0.00	NA	NA	3.12	4.76	7.69	5.26	21.43	NA	9.09	5.26	NA	8.33	5.88	5.88	11.90	9.09	9.09	16.67	15.38	1.93	4.50	2.58	0.629115	1.000000
K	intron_retention		chr16	+	chr16:31374696-31382404				chr16:31374695-31374696;chr16:31382404-31382405		7.41	14.29	8.47	0.00	8.33	NA	0.86	1.12	0.00	2.02	1.98	0.00	2.22	1.85	0.00	2.40	5.41	1.52	13.33	1.61	2.70	9.68	8.65	3.19	0.00	0.00	3.85	3.23	6.10	0.00	6.67	3.92	0.00	9.73	9.09	3.76	1.54	1.73	0.19	0.389164	1.000000
N	jcn_only_AA	TATDN3	chr1	+	chr1:212981191-212985568;chr1:212981191-212985635;chr1:212981191-212985589	chr1:212981191-212985592		chr1:212985569-212985589;chr1:212985590-212985592;chr1:212985593-212985635	chr1:212985589-212985590;chr1:212985592-212985593;chr1:212985635-212985636		23.33	58.82	35.29	NA	NA	NA	31.25	41.67	38.89	NA	35.71	NA	47.37	27.03	38.10	NA	30.00	NA	33.33	33.33	29.17	NA	NA	NA	72.73	37.50	34.48	NA	NA	NA	38.10	44.44	46.15	NA	40.00	NA	46.76	35.41	-11.34	0.073436	0.663989
K	intron_retention	CUL9	chr6	+	chr6:43190635-43191001				chr6:43190634-43190635;chr6:43191001-43191002		10.53	3.77	8.00	0.00	6.67	0.00	0.00	NA	NA	NA	4.55	NA	0.00	NA	0.00	NA	15.38	NA	5.00	0.00	6.98	NA	9.38	NA	4.94	12.50	10.34	10.00	9.09	NA	0.00	4.00	2.99	0.00	8.00	0.00	3.38	5.26	1.88	0.632126	1.000000
N	jcn_only_AA	GRN	chr17	+	chr17:42429940-42430028;chr17:42429940-42430087	chr17:42429940-42430083		chr17:42430029-42430083;chr17:42430084-42430087	chr17:42430083-42430084;chr17:42430087-42430088		0.00	8.84	0.00	7.02	6.84	8.12	0.00	6.69	0.00	8.48	10.38	9.14	0.00	0.00	6.72	4.98	10.31	0.00	7.16	6.16	6.55	5.78	6.39	5.88	10.19	0.00	6.91	5.30	6.55	5.82	5.47	6.56	7.56	7.16	5.21	6.16	7.36	2.73	-4.62	0.289541	0.663989
K	intron_retention		chr6	-	chr6:86387594-86387671				chr6:86387593-86387594;chr6:86387671-86387672		7.29	0.00	2.27	1.38	0.91	0.75	0.00	0.00	0.00	1.09	0.94	1.41	8.00	0.00	0.00	4.17	3.45	11.11	0.81	5.95	2.95	5.41	2.08	4.38	0.00	12.20	1.49	3.42	2.19	3.38	7.35	5.20	1.15	2.89	1.80	2.16	0.41	6.62	6.21	0.255606	1.000000
K	intron_retention	CARD19	chr9	+	chr9:95873004-95874499				chr9:95873003-95873004;chr9:95874499-95874500		31.11	54.72	36.36	36.36	35.29	NA	NA	NA	NA	NA	NA	NA	NA	30.00	8.33	NA	20.00	NA	39.39	29.41	44.00	50.00	37.70	NA	58.82	40.00	36.21	60.00	45.00	NA	33.33	36.21	44.19	43.75	46.15	35.71	49.45	31.11	-18.34	0.115745	1.000000
N	cassette	SH3BGRL	chrX	+	chrX:80457745-80492616;chrX:80457745-80532482	chrX:80457745-80457935;chrX:80458076-80492616,chrX:80458076-80532482		chrX:80457936-80458075			5.56	10.53	3.79	4.76	5.45	0.00	9.52	5.68	1.46	8.21	9.11	8.33	10.79	9.58	1.57	9.54	9.88	9.52	4.76	6.37	2.47	8.73	10.53	7.61	11.11	6.45	2.82	11.40	12.59	10.68	3.48	1.92	8.33	7.00	6.94	7.84	10.02	6.03	-4.00	0.040869	0.504725
K	intron_retention	TMEM150B	chr19	-	chr19:55824424-55828153				chr19:55824423-55824424;chr19:55828153-55828154		10.99	27.08	17.39	18.75	22.58	14.29	0.00	1.35	0.00	0.00	1.72	0.00	3.57	2.53	3.45	3.45	0.00	0.00	20.00	15.19	11.11	NA	30.43	16.67	36.59	10.59	11.36	25.00	23.53	18.92	16.13	12.63	21.05	20.83	22.22	22.22	20.52	10.79	-9.73	0.713210	1.000000
N	alternative_donor	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130931330;chr9:130929444-130931354	chr9:130929444-130929817		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		14.81	8.33	16.67	5.56	8.16	0.00	3.85	10.00	4.76	0.00	3.23	0.00	5.41	NA	3.85	3.45	2.86	0.00	4.55	8.70	5.26	15.38	13.33	6.25	9.09	11.76	17.50	3.70	4.92	8.00	18.18	13.95	4.76	9.68	16.67	17.86	5.08	11.76	6.67	0.013017	0.240572
N	jcn_only_AD	EHBP1L1	chr11	+	chr11:65341234-65346548;chr11:65343878-65346548	chr11:65345750-65346548		chr11:65341234-65343877;chr11:65343878-65345749	chr11:65341233-65341234;chr11:65343877-65343878		2.17	7.69	1.86	NA	NA	NA	1.90	0.00	0.00	2.13	0.00	0.00	0.00	0.40	1.84	0.00	1.52	0.00	NA	3.57	0.00	0.00	0.00	0.00	0.00	3.42	0.00	0.00	0.00	0.00	6.67	4.76	0.00	0.00	0.00	0.00	0.00	2.79	2.79	0.673493	0.831228
K	jcn_only_AA	MFSD10	chr4	-	chr4:2934418-2934832	chr4:2934486-2934832		chr4:2934418-2934485	chr4:2934417-2934418		100.00	100.00	100.00	NA	85.71	NA	95.16	96.30	100.00	100.00	96.43	90.48	100.00	92.86	97.30	100.00	94.87	100.00	NA	90.00	90.48	92.86	96.43	81.25	100.00	100.00	100.00	100.00	96.43	90.91	81.82	NA	NA	88.89	100.00	89.29	100.00	94.58	-5.42	0.132263	0.663989
K	intron_retention	CLCN7	chr16	-	chr16:1510529-1510816				chr16:1510528-1510529;chr16:1510816-1510817		14.71	3.85	14.93	NA	0.00	NA	0.00	2.13	0.00	0.00	0.00	0.00	2.15	0.00	2.35	2.04	0.00	0.00	NA	10.00	NA	9.09	14.55	14.71	31.58	2.78	7.55	3.70	4.65	NA	9.52	6.98	10.00	9.43	11.11	12.73	3.85	6.15	2.30	0.962758	1.000000
K	cassette	RP11-51F16.8,STRADA	chr17	-	chr17:61784100-61787850	chr17:61784100-61784606;chr17:61784779-61787850		chr17:61784607-61784778			91.43	100.00	92.16	NA	NA	NA	96.88	100.00	100.00	NA	100.00	NA	97.06	100.00	100.00	92.86	100.00	NA	NA	93.10	100.00	NA	78.57	NA	100.00	100.00	100.00	86.67	86.36	81.82	87.50	95.00	NA	87.50	80.77	100.00	98.53	96.55	-1.98	0.231218	0.709176
N	jcn_only_AA		chr17	+	chr17:41349124-41352204	chr17:41349124-41352183		chr17:41352184-41352204	chr17:41352204-41352205		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	PDPN	chr1	+	chr1:13940901-13942399;chr1:13940911-13942399	chr1:13940907-13942399		chr1:13940901-13940906;chr1:13940907-13940910	chr1:13940900-13940901;chr1:13940906-13940907		45.40	29.63	49.24	45.71	44.00	55.00	NA	46.96	41.05	40.91	33.33	NA	40.00	48.43	43.63	50.00	34.69	40.91	54.05	48.07	44.69	50.00	40.58	57.41	44.44	50.79	45.93	53.95	50.91	45.31	47.27	47.60	33.33	54.17	37.50	57.89	40.00	47.67	7.67	0.154958	0.563271
N	jcn_only_AA		chr11	+	chr11:819906-821740	chr11:819906-821627		chr11:821628-821740	chr11:821740-821741		96.23	100.00	97.67	NA	100.00	NA	93.94	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.68	100.00	100.00	NA	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.683701	0.860128
K	intron_retention	MVB12A	chr19	+	chr19:17533268-17534306				chr19:17533267-17533268;chr19:17534306-17534307		15.62	8.93	2.50	0.00	9.09	27.27	1.85	0.00	0.00	0.00	0.00	0.00	2.33	4.17	4.35	0.00	8.33	0.00	14.29	2.86	6.67	NA	12.00	9.09	17.31	8.00	6.06	NA	12.50	13.64	11.11	8.82	9.76	NA	5.88	11.76	9.34	6.08	-3.26	0.926830	1.000000
K	intron_retention	CDC16	chr13	+	chr13:115027424-115028353				chr13:115027423-115027424;chr13:115028353-115028354		4.00	11.90	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	3.45	1.43	4.17	0.00	0.00	2.78	0.00	0.00	3.57	0.00	0.00	0.00	0.00	2.00	3.12	0.00	0.00	0.00	0.855736	1.000000
K	jcn_only_AA	DNAJC4	chr11	+	chr11:64000087-64000175	chr11:64000087-64000172		chr11:64000173-64000175	chr11:64000175-64000176		10.71	9.82	9.72	13.04	10.09	8.82	17.24	27.78	8.82	12.90	15.00	20.00	10.17	18.18	9.38	18.75	11.90	6.67	14.67	18.75	11.84	8.33	11.86	17.24	13.41	14.29	10.81	19.23	17.74	12.82	14.71	9.84	10.59	9.76	17.95	15.09	12.00	16.45	4.45	0.117398	0.663989
K	intron_retention	CLASRP	chr19	+	chr19:45572507-45573279				chr19:45572506-45572507;chr19:45573279-45573280		3.37	1.80	3.70	2.11	2.88	2.70	0.00	0.00	5.00	0.00	6.25	0.00	9.09	0.00	0.00	9.52	0.00	0.00	1.66	2.74	1.24	2.50	1.41	0.00	1.40	5.66	5.49	11.76	4.65	6.25	0.74	2.84	0.92	4.08	1.52	4.04	1.53	1.74	0.21	0.888149	1.000000
N	jcn_only_AA	MOV10,UBAP2L	chr1	+	chr1:113241412-113242129;chr1:113241412-113242306	chr1:113241412-113242079		chr1:113242080-113242129;chr1:113242130-113242306	chr1:113242129-113242130;chr1:113242306-113242307		3.55	0.00	4.35	NA	0.00	5.08	0.00	3.23	3.90	NA	0.00	0.00	0.00	0.00	3.03	11.76	0.00	18.18	0.00	3.19	5.66	NA	0.00	7.14	0.00	6.67	2.27	7.69	0.00	5.41	5.75	5.31	0.00	0.00	5.00	5.88	0.00	3.39	3.39	0.011202	0.486024
K	jcn_only_AD	MRPL28	chr16	-	chr16:420226-420498;chr16:420226-420443	chr16:420226-420484		chr16:420444-420484;chr16:420485-420498	chr16:420484-420485;chr16:420498-420499		13.33	0.00	0.00	NA	NA	NA	0.00	0.00	9.52	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.645765	0.818639
N	alternative_acceptor		chr10	+	chr10:104181265-104181843;chr10:104181265-104181870	chr10:104181265-104181543		chr10:104181544-104181843;chr10:104181844-104181870	chr10:104181843-104181844;chr10:104181870-104181871		100.00	100.00	100.00	100.00	95.08	98.68	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	96.91	93.75	92.45	100.00	99.04	100.00	100.00	100.00	97.87	100.00	100.00	100.00	98.91	100.00	100.00	100.00	100.00	100.00	0.00	0.175759	0.660713
K	jcn_only_AA	BRCA2,EXOSC8	chr13	+	chr13:37581209-37582198	chr13:37581209-37582193		chr13:37582194-37582198	chr13:37582198-37582199		100.00	70.27	93.94	83.33	87.50	83.33	100.00	NA	100.00	NA	100.00	NA	91.67	NA	100.00	100.00	100.00	NA	76.47	100.00	91.67	93.33	81.82	82.35	100.00	100.00	100.00	100.00	96.00	100.00	89.47	87.10	78.57	87.50	91.43	72.00	85.12	100.00	14.88	0.096236	0.663989
N	alternative_donor		chr3	-	chr3:129284382-129284740	chr3:129284382-129284729		chr3:129284730-129284740	chr3:129284740-129284741		96.67	100.00	90.74	NA	84.62	NA	100.00	97.30	93.24	100.00	97.75	100.00	98.69	100.00	95.71	98.15	100.00	100.00	88.89	93.94	100.00	100.00	94.44	100.00	82.61	86.67	91.36	100.00	95.12	93.33	NA	85.29	80.00	93.33	96.55	92.45	93.79	96.67	2.88	0.481162	0.740288
K	intron_retention		chr19	-	chr19:48752891-48753007				chr19:48752890-48752891;chr19:48753007-48753008		0.00	6.67	0.00	NA	NA	NA	0.00	0.00	0.00	NA	5.00	NA	2.86	0.00	0.00	NA	0.00	NA	NA	7.14	NA	NA	7.14	NA	0.00	0.00	7.69	NA	7.69	NA	NA	9.09	0.00	NA	0.00	NA	0.00	0.00	0.00	0.868243	1.000000
K	alternative_acceptor	PER1	chr17	-	chr17:8047195-8048068	chr17:8047587-8048068		chr17:8047195-8047586	chr17:8047194-8047195		6.25	26.67	9.52	NA	NA	NA	0.00	0.00	NA	NA	NA	NA	NA	7.69	0.00	NA	9.09	NA	NA	10.00	NA	NA	6.67	NA	25.00	NA	NA	NA	NA	NA	15.79	12.90	66.67	NA	NA	NA	25.84	7.69	-18.14	0.214616	0.671511
K	alternative_last_exon	BCL2L2-PABPN1	chr14	+	chr14:23777409-23780181,chr14:23777409-23788943;chr14:23777409-23791389	chr14:23777409-23778024	chr14:23791390-23791504	chr14:23778025-23780968			82.35	60.00	81.48	NA	72.73	NA	91.30	90.32	91.67	93.10	90.00	100.00	96.00	92.31	91.11	97.22	91.43	90.91	NA	83.33	78.57	100.00	76.19	NA	66.67	100.00	70.83	100.00	95.24	83.33	61.54	82.35	NA	94.44	85.71	93.75	78.98	86.82	7.84	0.559703	0.703410
K	intron_retention	PHRF1	chr11	+	chr11:611083-611633				chr11:611082-611083;chr11:611633-611634		5.26	0.00	1.85	0.00	2.35	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	1.41	0.00	1.22	6.00	1.37	4.26	0.00	6.90	0.00	2.78	2.08	1.75	6.15	2.78	2.61	4.26	3.77	3.03	0.00	2.63	2.63	0.425828	1.000000
K	cassette	HSD17B14	chr19	-	chr19:49318399-49335922	chr19:49318399-49334924;chr19:49335017-49335922		chr19:49334925-49335016			82.05	78.26	84.62	80.77	74.76	91.49	97.37	90.00	83.33	93.94	89.13	94.44	94.59	82.50	78.57	91.67	87.27	100.00	76.47	74.19	80.00	84.78	76.85	88.64	84.51	72.97	71.43	81.63	79.41	85.48	68.42	73.33	80.28	75.41	79.17	89.86	82.40	78.12	-4.28	0.183552	0.709176
K	alternative_donor	RNF220	chr1	+	chr1:45101261-45101701	chr1:45101339-45101701		chr1:45101261-45101338	chr1:45101260-45101261		15.38	13.04	24.07	NA	18.18	NA	17.14	18.52	21.82	18.37	29.09	21.05	13.33	21.74	24.49	24.29	17.72	18.18	23.53	13.64	33.33	14.29	21.82	15.00	25.00	9.09	25.00	18.18	16.22	25.00	8.33	15.38	31.58	17.39	17.95	21.43	20.34	14.51	-5.82	0.129365	0.540946
K	intron_retention	RP11-498C9.2	chr17	+	chr17:79801210-79801474				chr17:79801209-79801210;chr17:79801474-79801475		94.44	96.06	94.12	96.16	96.90	96.03	95.48	94.23	97.94	95.51	94.95	94.62	95.66	95.73	96.82	97.23	96.83	95.06	90.91	91.74	92.07	94.25	96.01	95.65	94.86	96.29	94.87	96.30	96.12	95.20	92.54	91.98	92.62	96.23	97.78	97.21	95.17	94.34	-0.83	0.593458	1.000000
K	intron_retention	GBA2	chr9	-	chr9:35738150-35738228				chr9:35738149-35738150;chr9:35738228-35738229		45.45	47.37	59.09	NA	54.55	NA	13.33	21.43	12.50	NA	20.00	NA	35.71	17.65	27.27	13.33	20.00	NA	NA	50.00	33.33	57.14	51.28	63.64	NA	42.11	57.69	38.46	56.00	35.71	60.00	58.82	45.45	53.33	66.67	60.00	40.58	43.78	3.20	0.998470	1.000000
K	cassette	DMAP1	chr1	+	chr1:44680114-44680374	chr1:44680114-44680210;chr1:44680289-44680374		chr1:44680211-44680288			0.00	0.00	0.00	NA	0.00	NA	0.00	5.88	0.00	NA	0.00	NA	0.00	0.00	4.35	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	cassette	PLXND1	chr3	-	chr3:129284861-129286334	chr3:129284861-129285369;chr3:129285475-129286334		chr3:129285370-129285474			95.52	91.00	95.34	NA	100.00	NA	99.37	100.00	100.00	100.00	99.31	100.00	99.07	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	94.29	92.65	92.98	93.75	95.83	96.77	97.06	97.65	100.00	NA	98.00	83.33	94.67	92.54	91.13	96.41	100.00	3.59	0.223867	0.709176
K	alternative_acceptor	RHOT2	chr16	+	chr16:721001-721114	chr16:721001-721082		chr16:721083-721114	chr16:721114-721115		78.26	100.00	88.46	NA	88.89	NA	100.00	NA	100.00	100.00	94.44	NA	100.00	100.00	95.24	100.00	100.00	NA	NA	80.95	100.00	86.67	88.89	82.35	84.21	100.00	85.71	91.67	86.96	92.31	73.91	77.42	83.33	84.21	88.00	92.59	100.00	80.95	-19.05	0.347256	0.709013
N	cassette	AP5Z1	chr7	+	chr7:4829561-4830745	chr7:4829561-4830440;chr7:4830519-4830745		chr7:4830441-4830518			100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.20	100.00	100.00	100.00	100.00	100.00	0.00	0.183574	0.709176
K	jcn_only_AD	TAPBPL	chr12	+	chr12:6566911-6570020	chr12:6568114-6570020					100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	96.00	96.77	100.00	100.00	91.30	95.24	94.74	100.00	94.12	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	98.78	100.00	98.25	100.00	94.74	96.51	97.70	100.00	100.00	97.26	100.00	100.00	0.00	0.268823	0.657607
N	jcn_only_AD	SDHC	chr1	+	chr1:161284216-161293403;chr1:161284394-161293403	chr1:161284665-161293403		chr1:161284216-161284393;chr1:161284394-161284664	chr1:161284215-161284216;chr1:161284393-161284394		0.00	0.00	3.64	NA	0.00	NA	0.51	0.00	0.00	2.53	0.00	0.00	0.00	0.00	3.03	0.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.56	1.85	0.00	0.00	0.00	0.00	5.41	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.527303	0.754861
N	coord_cassette	TRNAU1AP	chr1	+	chr1:28891347-28904011	chr1:28891347-28897687;chr1:28897851-28898378;chr1:28898413-28904011		chr1:28897688-28897850;chr1:28898379-28898412			100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	93.33	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.11	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.248687	0.643829
N	alternative_acceptor	NEK6	chr9	+	chr9:127110102-127113115;chr9:127110102-127111606	chr9:127110102-127138048		chr9:127111607-127113115;chr9:127113116-127138048	chr9:127113115-127113116;chr9:127138048-127138049		0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.270289	0.709013
K	intron_retention	IDH3B	chr20	-	chr20:2640823-2640908				chr20:2640822-2640823;chr20:2640908-2640909		0.00	9.68	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	6.49	0.00	2.13	0.00	4.00	0.00	2.56	0.00	4.76	4.88	0.00	1.72	6.06	4.00	0.00	0.00	0.00	0.972129	1.000000
K	cassette	ATP6V1D	chr14	-	chr14:67807236-67812484	chr14:67807236-67810088;chr14:67810156-67812484		chr14:67810089-67810155			98.82	100.00	97.18	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	59.09	56.25	60.00	50.51	58.67	64.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.65	100.00	97.30	100.00	100.00	99.00	100.00	99.41	-0.59	0.951727	0.987421
N	alternative_donor	TPD52L2	chr20	+	chr20:62496738-62500648	chr20:62498290-62500648		chr20:62496738-62498289	chr20:62496737-62496738		1.19	2.56	0.97	NA	2.44	NA	0.89	4.92	1.30	4.84	2.45	0.00	1.12	7.84	2.63	2.99	2.29	0.00	0.00	2.30	0.00	2.17	0.56	3.23	5.26	3.45	1.37	2.00	2.08	0.00	2.94	1.20	0.00	1.37	1.37	0.00	1.01	3.20	2.19	0.121871	0.535019
N	cassette	DPP7	chr9	-	chr9:140006683-140007404	chr9:140006683-140007171;chr9:140007258-140007404		chr9:140007172-140007257			96.15	100.00	100.00	100.00	96.59	100.00	100.00	100.00	100.00	100.00	99.19	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	98.25	94.92	96.09	100.00	98.04	100.00	95.71	100.00	97.67	100.00	100.00	96.36	96.15	93.62	96.00	98.33	99.02	100.00	0.98	0.394092	0.710703
K	intron_retention	DEF6	chr6	+	chr6:35278422-35280078				chr6:35278421-35278422;chr6:35280078-35280079		7.14	7.69	14.29	NA	5.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	3.33	NA	0.00	4.76	7.32	NA	0.00	NA	NA	0.00	8.33	0.00	9.68	NA	0.00	0.00	0.00	0.969371	1.000000
K	intron_retention		chr5	+	chr5:139917175-139917670				chr5:139917174-139917175;chr5:139917670-139917671		1.82	0.00	2.30	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	2.08	0.00	0.00	0.00	0.00	NA	0.00	2.63	0.00	0.00	0.00	5.13	3.95	13.33	0.00	0.00	0.00	0.00	0.91	0.91	0.560714	1.000000
K	intron_retention	NBEAL2	chr3	+	chr3:47049677-47049772				chr3:47049676-47049677;chr3:47049772-47049773		0.00	6.38	6.12	4.55	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	2.78	7.14	3.51	5.56	0.00	6.67	0.00	0.00	0.00	0.00	0.00	4.17	0.00	3.45	4.76	4.76	3.23	2.33	1.39	0.00	-1.39	0.820959	1.000000
K	intron_retention	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481563-7481659				chr17:7481562-7481563;chr17:7481659-7481660		5.42	5.73	7.12	3.21	3.56	2.17	0.33	0.34	0.88	0.16	0.40	0.00	0.36	0.46	0.77	0.38	0.46	0.00	3.44	6.03	4.83	3.48	5.15	3.12	3.88	3.22	4.37	1.66	2.44	2.12	13.20	13.02	7.41	2.96	3.52	2.27	3.66	4.32	0.66	0.878993	1.000000
K	intron_retention	YKT6	chr7	+	chr7:44247798-44250621				chr7:44247797-44247798;chr7:44250621-44250622		4.65	0.00	6.86	5.56	2.50	7.41	0.00	1.14	1.25	0.96	0.79	2.94	1.03	1.22	1.11	0.91	0.79	1.33	0.00	5.88	4.29	5.41	2.50	6.90	0.00	3.57	1.22	4.55	1.33	4.11	5.43	6.32	5.13	5.79	3.97	9.38	0.00	4.11	4.11	0.399868	1.000000
N	alternative_acceptor	PPM1M	chr3	+	chr3:52283339-52283685;chr3:52283339-52283671	chr3:52283339-52283660		chr3:52283661-52283671;chr3:52283672-52283685	chr3:52283671-52283672;chr3:52283685-52283686		21.28	11.76	24.53	NA	13.16	NA	4.24	4.88	0.00	5.00	6.67	0.00	4.59	12.00	8.70	5.88	7.04	NA	22.22	16.00	15.38	16.67	18.60	NA	18.18	11.54	15.38	11.11	18.45	NA	8.33	15.38	13.04	4.17	12.50	NA	12.40	11.77	-0.63	1.000000	1.000000
N	alternative_acceptor	XPC	chr3	-	chr3:14188880-14189407;chr3:14189333-14189407	chr3:14189280-14189407		chr3:14188880-14189279;chr3:14189280-14189332	chr3:14188879-14188880;chr3:14189279-14189280		3.03	1.96	3.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.00	0.00	0.00	NA	0.00	2.94	2.00	4.00	3.45	7.14	0.00	3.33	2.70	0.00	0.00	NA	5.13	3.85	0.00	7.89	3.85	8.00	0.00	2.98	2.98	0.054704	0.570243
K	intron_retention	MAN2B2	chr4	+	chr4:6621772-6622914				chr4:6621771-6621772;chr4:6622914-6622915		11.76	12.00	11.67	NA	11.76	NA	4.69	3.70	2.08	0.00	2.63	0.00	2.67	3.12	0.00	0.00	5.45	0.00	0.00	3.70	0.00	5.00	7.55	0.00	NA	6.38	7.84	5.00	6.67	0.00	7.89	7.59	7.69	7.14	11.11	5.63	4.69	5.04	0.35	0.652741	1.000000
K	jcn_only_AD	ARAP1	chr11	-	chr11:72421022-72421478	chr11:72421022-72421429		chr11:72421430-72421478	chr11:72421478-72421479		91.79	81.25	89.01	NA	88.24	NA	100.00	97.54	96.24	97.73	98.06	97.83	97.73	95.05	93.71	98.60	99.04	97.14	84.62	92.20	85.71	89.19	90.24	94.59	87.50	91.87	92.96	95.65	96.43	94.12	81.13	87.50	81.82	89.80	89.52	88.30	86.06	92.03	5.97	0.508467	0.747808
K	alternative_first_exon	SPAG7	chr17	-	chr17:4864149-4868659,chr17:4864149-4870721;chr17:4864149-4871014	chr17:4864149-4869695	chr17:4871015-4871167	chr17:4869696-4870486			0.00	3.23	4.76	0.00	3.12	0.00	0.00	0.00	1.54	1.69	0.00	2.38	1.92	0.00	1.47	4.00	1.25	2.27	0.00	5.88	2.86	0.00	2.33	5.56	0.00	4.00	2.33	0.00	3.23	0.00	0.00	3.33	7.69	4.17	3.57	3.12	0.96	0.00	-0.96	0.769004	0.844955
K	alternative_last_exon	DHX8	chr17	+	chr17:41599595-41603754;chr17:41599595-41600995;chr17:41599595-41603863	chr17:41599595-41613779	chr17:41600996-41603038;chr17:41603864-41604154	chr17:41613780-41613866			0.00	0.00	1.54	0.00	0.00	0.00	3.70	3.85	4.00	3.57	0.00	0.00	0.00	4.00	10.71	3.03	3.33	0.00	0.00	2.63	0.00	0.00	2.33	3.57	0.00	2.63	1.89	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	1.82	0.00	2.63	2.63	0.132800	0.343067
N	jcn_only_AD	TNFRSF14	chr1	+	chr1:2485752-2488023;chr1:2487290-2488023;chr1:2487692-2488023;chr1:2487701-2488023	chr1:2487472-2488023		chr1:2485752-2487289;chr1:2487290-2487471;chr1:2487472-2487691;chr1:2487692-2487700	chr1:2485751-2485752;chr1:2487289-2487290;chr1:2487471-2487472;chr1:2487691-2487692		5.56	0.00	0.00	7.69	0.00	NA	14.29	NA	NA	20.00	12.12	20.00	6.38	0.00	NA	5.77	6.06	0.00	0.00	0.00	0.00	0.00	7.58	0.00	0.00	NA	0.00	8.51	14.49	6.25	0.00	NA	NA	5.41	0.00	11.43	0.00	0.00	0.00	0.418331	0.680950
K	intron_retention	CEPT1	chr1	+	chr1:111726210-111726812				chr1:111726209-111726210;chr1:111726812-111726813		3.57	0.00	3.92	NA	6.45	NA	1.56	5.41	2.94	9.09	2.13	5.26	0.00	0.00	0.00	0.00	0.00	15.38	4.00	2.13	3.70	5.88	2.50	13.04	0.00	6.25	2.86	9.09	2.56	21.05	0.00	0.00	0.00	7.50	1.85	12.50	0.00	2.85	2.85	0.489885	1.000000
K	jcn_only_AA	DDX56	chr7	-	chr7:44608592-44608728	chr7:44608605-44608728		chr7:44608592-44608604	chr7:44608591-44608592		0.00	0.00	6.12	0.00	2.90	6.56	0.00	NA	0.00	0.00	2.13	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.08	10.34	0.00	4.65	3.17	0.00	0.00	0.00	0.00	0.00	2.13	2.44	5.88	5.77	5.62	0.00	5.88	3.64	0.00	2.94	2.94	0.389424	0.663989
K	intron_retention	RPL3	chr22	-	chr22:39708990-39709195				chr22:39708989-39708990;chr22:39709195-39709196		10.00	0.46	2.50	0.41	0.24	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	5.00	1.99	0.82	0.42	0.59	0.16	0.00	0.61	0.00	0.00	0.14	15.43	13.20	2.83	0.60	0.52	0.61	0.31	2.50	2.19	0.307344	1.000000
K	cassette	FMNL1	chr17	+	chr17:43311568-43313502	chr17:43311568-43312198;chr17:43312217-43313502		chr17:43312199-43312216			12.33	8.93	10.42	NA	7.69	NA	5.50	12.23	7.98	16.67	10.16	17.24	13.48	5.61	8.25	15.69	11.26	17.91	25.00	11.51	15.00	17.65	5.79	12.00	0.00	8.53	10.53	11.32	5.97	8.33	11.29	7.43	14.29	6.02	8.63	8.33	11.21	11.40	0.19	0.804372	0.936947
K	jcn_only_AA	TEP1	chr14	-	chr14:20837040-20837502	chr14:20837062-20837502		chr14:20837040-20837061	chr14:20837039-20837040		92.59	88.89	97.14	100.00	100.00	97.83	93.10	95.83	90.00	NA	91.67	NA	100.00	100.00	95.00	NA	92.31	100.00	97.62	92.86	95.12	NA	93.33	100.00	100.00	100.00	94.12	100.00	100.00	96.88	98.11	100.00	100.00	95.00	94.12	97.78	98.81	96.97	-1.84	0.987806	0.997790
K	jcn_only_AD	CRELD1	chr3	+	chr3:9982701-9982794	chr3:9982711-9982794		chr3:9982701-9982710	chr3:9982700-9982701		92.86	83.33	100.00	NA	NA	NA	100.00	100.00	100.00	90.91	100.00	NA	100.00	100.00	100.00	100.00	88.89	100.00	NA	91.67	93.33	NA	86.67	NA	NA	95.65	100.00	NA	NA	NA	100.00	90.48	80.00	100.00	81.82	100.00	91.66	97.83	6.16	0.358576	0.657607
K	intron_retention	CES2,RP11-361L15.4	chr16	+	chr16:66976689-66977201				chr16:66976688-66976689;chr16:66977201-66977202		0.00	0.00	3.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	3.70	NA	NA	0.00	0.00	NA	9.09	0.00	10.53	2.94	0.00	0.00	4.17	3.85	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	HGS	chr17	+	chr17:79660996-79661844	chr17:79660996-79661285		chr17:79661286-79661844	chr17:79661844-79661845		11.86	11.43	8.60	10.00	6.67	NA	0.00	1.45	0.00	0.00	0.00	0.00	0.00	1.28	4.04	2.22	4.00	0.00	NA	10.71	7.14	11.76	8.22	12.07	13.33	8.82	8.82	11.90	6.82	10.00	8.70	9.28	0.00	11.49	6.98	13.86	0.00	8.76	8.76	0.561919	0.830563
N	alternative_acceptor	SNRPD3	chr22	+	chr22:24964006-24967985	chr22:24964006-24967883		chr22:24967884-24967985	chr22:24967985-24967986		95.65	92.42	83.33	94.87	94.12	95.00	87.10	NA	90.00	81.25	90.91	76.00	89.74	81.82	91.30	89.47	95.65	88.24	96.00	90.48	87.72	72.73	88.46	64.71	100.00	80.00	83.33	94.12	86.21	84.62	86.36	83.87	90.70	88.89	93.10	77.78	91.56	86.36	-5.20	0.133635	0.629354
K	intron_retention	FBXL15	chr10	+	chr10:104182050-104182560				chr10:104182049-104182050;chr10:104182560-104182561		6.45	3.79	12.07	4.69	3.30	4.17	0.00	0.00	0.00	0.00	4.35	NA	2.00	0.00	0.00	3.12	3.70	0.00	2.96	3.03	4.90	13.33	7.41	0.00	2.03	2.70	4.23	5.00	2.44	0.00	10.00	9.86	6.62	0.00	3.57	2.50	2.50	2.87	0.37	0.929436	1.000000
K	cassette	CLEC2B	chr12	-	chr12:10010237-10021803	chr12:10010237-10015097;chr12:10015173-10021803		chr12:10015098-10015172			95.61	94.12	97.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	98.08	100.00	98.28	100.00	100.00	100.00	97.80	97.56	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.15	97.85	100.00	100.00	100.00	100.00	99.04	-0.96	0.948843	0.987421
K	cassette	NPEPPS	chr17	+	chr17:45696531-45697102	chr17:45696531-45696643;chr17:45696689-45697102		chr17:45696644-45696688			0.00	14.71	0.00	0.00	0.00	NA	0.00	3.57	2.86	0.00	0.00	5.26	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	5.56	5.26	0.00	3.12	0.00	2.78	0.00	0.00	0.00	0.00	0.00	3.51	0.00	0.00	0.00	7.84	0.00	0.00	0.00	0.604387	0.852612
N	jcn_only_AD	PRKCSH	chr19	+	chr19:11558434-11558507;chr19:11558413-11558507	chr19:11558323-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	12.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	CRTC2	chr1	-	chr1:153924923-153925046				chr1:153924922-153924923;chr1:153925046-153925047		7.04	18.52	8.46	NA	0.00	NA	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.50	6.67	0.00	6.67	8.70	28.57	1.67	3.70	0.00	0.00	0.00	7.69	11.39	7.69	4.35	3.51	5.66	7.69	4.36	-3.33	0.512923	1.000000
N	jcn_only_AD	IRF3	chr19	-	chr19:50164086-50165401;chr19:50164086-50164706;chr19:50164086-50165441	chr19:50164086-50165204		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		86.36	84.09	78.12	92.86	94.44	88.89	100.00	94.12	92.68	NA	100.00	NA	100.00	100.00	97.56	NA	95.24	NA	90.72	100.00	87.84	NA	92.50	NA	81.10	100.00	91.49	NA	95.65	80.00	80.00	78.26	80.56	NA	78.95	NA	87.41	97.06	9.66	0.445681	0.704340
N	jcn_only_AA	CCDC53	chr12	-	chr12:102433754-102437882;chr12:102433781-102437882	chr12:102433757-102437882		chr12:102433754-102433756;chr12:102433757-102433780	chr12:102433753-102433754;chr12:102433756-102433757		73.81	82.00	79.01	88.89	74.36	78.57	81.43	86.54	89.09	88.89	84.62	88.57	85.71	80.39	77.78	83.87	83.33	86.21	86.67	79.59	82.61	78.26	78.72	87.50	80.00	78.00	88.46	84.62	80.77	87.50	84.85	77.19	74.07	86.49	76.19	84.21	81.72	79.99	-1.72	0.681404	0.857722
K	jcn_only_AA	LYPLA2,SEC22B	chr1	+	chr1:24120816-24121041	chr1:24120816-24120916		chr1:24120917-24121041	chr1:24121041-24121042		95.52	100.00	100.00	100.00	93.94	100.00	100.00	100.00	100.00	94.74	100.00	100.00	94.59	100.00	100.00	100.00	100.00	NA	89.74	94.00	100.00	100.00	100.00	100.00	100.00	90.70	100.00	100.00	98.68	94.12	92.86	100.00	95.12	100.00	100.00	100.00	97.56	94.76	-2.80	0.656360	0.846812
N	jcn_only_AD	MCOLN1	chr19	+	chr19:7593590-7593706	chr19:7593608-7593706		chr19:7593590-7593607	chr19:7593589-7593590		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.13	2.08	0.00	0.00	3.45	3.85	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.563888	0.779248
N	jcn_only_AA	RP11-24F11.2	chr3	-	chr3:46406537-46412734;chr3:46408772-46412734	chr3:46408776-46412734		chr3:46406537-46408771;chr3:46408772-46408775	chr3:46406536-46406537;chr3:46408771-46408772		0.00	0.00	0.00	NA	5.56	0.00	14.71	0.00	0.00	11.11	4.08	15.38	0.00	7.69	0.00	17.65	0.00	14.29	0.00	6.98	8.00	6.25	10.00	22.22	0.00	12.07	3.92	0.00	10.17	0.00	11.11	15.38	0.00	12.50	10.00	15.38	0.00	7.34	7.34	0.264412	0.663989
K	alternative_acceptor	TRPM2	chr21	+	chr21:45845711-45846582	chr21:45845711-45846542		chr21:45846543-45846582	chr21:45846582-45846583		88.89	97.10	100.00	100.00	90.00	NA	93.33	71.43	NA	NA	85.71	NA	95.83	95.00	NA	NA	81.48	NA	90.91	87.50	77.78	100.00	90.91	100.00	100.00	100.00	96.15	80.00	100.00	80.00	87.50	100.00	91.23	89.29	89.36	87.76	94.58	88.19	-6.39	0.179729	0.660713
N	alternative_donor	DNAJB11	chr3	+	chr3:186295857-186299159;chr3:186295590-186299159	chr3:186297894-186299159		chr3:186295590-186295856;chr3:186295857-186297893	chr3:186295589-186295590;chr3:186295856-186295857		1.23	0.00	3.45	0.00	0.00	0.00	0.86	1.23	0.00	1.00	0.88	1.69	0.75	1.14	1.52	0.86	0.63	0.83	0.00	1.22	0.00	3.28	1.12	4.44	0.00	2.17	1.18	1.54	1.35	1.35	1.39	2.27	0.00	3.41	5.00	5.13	0.00	1.23	1.23	0.000677	0.083733
K	jcn_only_AA	SDCBP,SORBS3	chr8	+	chr8:59484874-59488461;chr8:59484874-59490606	chr8:59484874-59488458					75.21	73.08	75.89	78.57	81.63	NA	76.08	73.82	75.67	77.04	79.25	76.18	75.71	75.20	75.79	75.59	77.36	76.92	NA	72.03	71.43	74.51	74.67	73.77	100.00	74.85	72.01	75.11	72.49	78.41	70.57	69.17	66.67	73.67	73.78	72.93	75.71	74.33	-1.38	0.457236	0.719945
K	jcn_only_AD	ILKAP	chr2	-	chr2:239096899-239098499;chr2:239096899-239098493	chr2:239096899-239098503		chr2:239098494-239098499;chr2:239098500-239098503	chr2:239098499-239098500;chr2:239098503-239098504		28.57	0.00	6.90	7.69	8.33	0.00	0.00	0.00	5.26	2.70	6.67	6.67	5.88	18.18	9.52	0.00	0.00	14.29	NA	22.22	6.67	12.50	9.38	11.11	NA	NA	16.00	0.00	10.00	15.38	25.00	18.18	16.67	13.04	17.24	16.67	2.94	22.22	19.28	0.077625	0.627804
N	alternative_donor	RPS4Y1	chrY	+	chrY:2713785-2722640	chrY:2721733-2722640		chrY:2713785-2721732	chrY:2713784-2713785		2.56	0.20	4.72	0.00	0.19	0.00	0.43	4.65	3.17	0.43	0.92	0.46	0.97	4.88	5.33	1.63	1.25	0.51	0.00	3.51	0.00	3.51	2.11	5.26	0.00	8.33	2.72	3.20	1.34	0.91	0.00	1.44	0.00	4.13	5.47	3.41	0.10	4.08	3.98	0.021142	0.280084
K	alternative_acceptor	SNAP23	chr15	+	chr15:42822018-42837333;chr15:42822018-42837406	chr15:42822018-42823610		chr15:42823611-42837333;chr15:42837334-42837406	chr15:42837333-42837334;chr15:42837406-42837407		100.00	88.24	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	92.86	100.00	91.67	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	100.00	80.00	NA	100.00	NA	92.86	100.00	7.14	0.109059	0.600043
K	intron_retention	KLC1	chr14	+	chr14:104153549-104158695				chr14:104153548-104153549;chr14:104158695-104158696		4.55	2.56	2.63	0.00	0.00	0.00	0.00	0.00	0.00	2.86	8.70	0.00	7.69	0.00	9.52	2.63	4.17	0.00	0.00	0.00	0.00	4.35	4.17	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	3.33	0.00	6.52	3.23	7.27	0.00	0.00	0.00	0.767477	1.000000
N	intron_retention		chr19	-	chr19:47112504-47113053				chr19:47112503-47112504;chr19:47113053-47113054		100.00	100.00	81.37	97.40	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	91.84	100.00	100.00	100.00	100.00	94.37	97.53	98.81	100.00	100.00	100.00	93.06	86.96	100.00	100.00	100.00	100.00	90.32	100.00	100.00	98.65	97.24	100.00	100.00	0.00	0.324023	1.000000
N	jcn_only_AA	TM2D3	chr15	-	chr15:102185366-102186927	chr15:102186245-102186927		chr15:102185366-102186244	chr15:102185365-102185366		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
N	alternative_acceptor	SGF29	chr16	+	chr16:28602257-28602910	chr16:28602257-28602361		chr16:28602362-28602910	chr16:28602910-28602911		7.69	5.62	10.00	8.57	6.25	6.58	NA	9.09	5.88	8.33	7.69	8.33	0.00	7.69	4.76	7.14	0.00	0.00	1.43	6.25	4.76	6.67	9.52	4.00	2.74	6.52	NA	7.69	6.25	4.35	9.52	0.00	8.33	5.88	16.67	11.11	2.74	7.69	4.95	0.046806	0.570243
N	jcn_only_AD	SLAMF8	chr1	+	chr1:159803184-159804973;chr1:159804034-159804973	chr1:159803160-159804973		chr1:159803160-159803183;chr1:159803184-159804033	chr1:159803159-159803160;chr1:159803183-159803184		96.72	100.00	100.00	NA	NA	NA	98.05	96.35	98.00	100.00	94.52	100.00	96.53	96.47	94.87	100.00	98.33	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.36	-1.64	0.416098	0.678068
N	jcn_only_AA	RCOR3	chr1	+	chr1:203831351-203834168	chr1:203831351-203832790					100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	97.98	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	SRSF5	chr14	+	chr14:70237823-70237910				chr14:70237822-70237823;chr14:70237910-70237911		7.69	4.41	5.73	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.35	6.52	3.70	4.60	3.65	4.35	0.00	4.30	1.71	0.98	0.00	0.00	20.54	14.21	12.70	6.73	6.25	4.72	2.21	5.41	3.21	0.946123	1.000000
K	alternative_acceptor	FRG1	chr4	+	chr4:190878658-190882016	chr4:190878658-190881902		chr4:190881903-190882016	chr4:190882016-190882017		100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	95.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.176656	0.660713
N	jcn_only_AA		chr7	+	chr7:128588176-128588283;chr7:128588176-128588243	chr7:128588176-128588263		chr7:128588244-128588263;chr7:128588264-128588283	chr7:128588263-128588264;chr7:128588283-128588284		100.00	100.00	100.00	100.00	96.15	100.00	94.29	96.64	95.60	96.39	96.05	96.33	96.48	94.78	96.18	96.80	97.54	94.79	100.00	97.62	96.55	97.51	96.97	95.50	100.00	95.21	100.00	95.93	95.94	96.55	95.50	95.35	100.00	96.18	97.78	96.21	100.00	96.07	-3.93	0.186302	0.663989
K	intron_retention	CAPG	chr2	-	chr2:85628712-85628773				chr2:85628711-85628712;chr2:85628773-85628774		90.54	92.54	90.75	93.85	92.51	93.81	90.53	90.86	91.18	94.18	95.13	95.21	90.50	89.95	90.00	89.62	96.47	95.41	96.14	95.74	96.07	91.50	90.75	94.95	90.76	90.60	90.69	94.75	92.07	93.06	93.33	94.93	96.13	91.81	91.31	90.42	91.65	90.73	-0.92	0.783043	1.000000
N	jcn_only_AD	PCNXL3	chr11	+	chr11:65403275-65403644	chr11:65403503-65403644		chr11:65403275-65403502	chr11:65403274-65403275		52.17	28.57	30.77	NA	NA	NA	0.00	16.67	5.88	16.67	30.77	NA	0.00	13.33	18.52	NA	16.67	NA	18.18	18.75	NA	30.00	20.00	NA	NA	24.14	11.11	NA	33.33	NA	36.84	24.14	7.69	NA	33.33	17.65	7.69	21.45	13.75	0.081459	0.629777
K	intron_retention	SIGLEC1	chr20	-	chr20:3686688-3686993				chr20:3686687-3686688;chr20:3686993-3686994		7.14	14.71	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.25	0.00	0.00	0.00	NA	2.99	0.00	10.00	0.00	8.57	0.00	2.86	2.78	12.00	0.00	3.23	2.70	0.00	NA	10.00	0.00	8.67	0.00	2.78	2.78	0.991307	1.000000
N	jcn_only_AA	MCOLN1	chr19	+	chr19:7594599-7595171;chr19:7594599-7595255	chr19:7594599-7595320		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		9.86	7.89	10.81	11.11	9.30	16.67	8.20	3.23	4.76	17.33	25.61	19.70	13.45	7.14	6.25	15.46	26.87	30.65	18.97	9.62	17.07	14.81	12.99	0.00	5.26	4.65	5.00	11.43	14.44	13.33	13.95	9.38	18.99	11.11	12.73	8.51	10.82	8.38	-2.45	0.197267	0.663989
N	intron_retention		chr5	+	chr5:122154561-122154677				chr5:122154560-122154561;chr5:122154677-122154678		95.31	97.01	96.15	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	99.31	100.00	98.15	100.00	100.00	100.00	96.55	100.00	100.00	91.67	100.00	91.67	100.00	95.96	100.00	100.00	100.00	100.00	93.02	94.12	92.59	100.00	100.00	100.00	98.16	97.98	-0.18	0.992083	1.000000
N	cassette	C1orf162	chr1	+	chr1:112019701-112020272;chr1:112018688-112020604;chr1:112019490-112020272;chr1:112019701-112020347;chr1:112019490-112020347;chr1:112019490-112020604;chr1:112019701-112020604	chr1:112018688-112019955,chr1:112019490-112019955,chr1:112019701-112019955;chr1:112020051-112020272,chr1:112020051-112020347,chr1:112020051-112020604		chr1:112019956-112020050			78.87	73.11	67.24	68.75	66.43	91.67	87.93	100.00	80.00	87.72	88.24	92.54	91.30	82.35	NA	90.74	87.61	90.14	73.24	71.05	80.65	77.27	69.37	76.00	80.65	88.24	64.63	78.95	77.93	83.33	80.00	67.80	71.08	78.57	71.29	62.86	76.94	81.17	4.23	0.483878	0.773418
K	intron_retention	PPIA	chr7	+	chr7:44838504-44838845				chr7:44838503-44838504;chr7:44838845-44838846		37.50	26.67	39.02	31.25	26.32	NA	12.50	0.00	5.88	14.29	11.76	0.00	3.57	5.00	17.07	13.33	6.67	0.00	18.18	46.15	28.57	58.62	53.33	52.00	NA	29.41	29.63	31.58	32.14	37.50	36.36	52.17	30.00	46.88	48.28	42.86	18.18	32.88	14.70	0.551348	1.000000
N	alternative_acceptor		chr1	+	chr1:12089339-12089897;chr1:12089339-12089790	chr1:12089339-12089821		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		94.44	78.57	NA	NA	90.00	95.83	100.00	100.00	97.87	91.67	NA	100.00	93.75	100.00	91.49	NA	NA	100.00	86.96	92.86	95.65	NA	90.91	NA	93.10	93.33	100.00	91.67	90.00	91.18	91.67	93.33	88.46	NA	NA	95.00	90.78	93.88	3.10	0.157621	0.660713
K	alternative_first_exon	PPCS	chr1	+	chr1:42922396-42922917;chr1:42922171-42922917	chr1:42922300-42922917,chr1:42922745-42922917	chr1:42921788-42922170	chr1:42922232-42922299			96.00	89.29	94.59	NA	100.00	NA	98.04	97.30	97.78	94.12	95.35	NA	98.04	92.59	97.78	86.67	97.44	90.00	90.91	96.00	100.00	100.00	97.14	NA	NA	100.00	100.00	100.00	83.33	NA	100.00	100.00	NA	100.00	97.22	94.44	94.47	96.65	2.18	0.316506	0.524888
N	jcn_only_AA		chr20	+	chr20:30746318-30747058;chr20:30746318-30746972	chr20:30746318-30747794		chr20:30746973-30747058;chr20:30747059-30747794	chr20:30747058-30747059;chr20:30747794-30747795		98.28	63.64	98.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.94	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391337	0.664050
N	alternative_acceptor	AD000671.6,U2AF1L4	chr19	-	chr19:36235148-36235223;chr19:36235124-36235223	chr19:36235047-36235223		chr19:36235047-36235123;chr19:36235124-36235147	chr19:36235046-36235047;chr19:36235123-36235124		85.71	78.12	84.62	83.33	76.79	87.50	87.50	NA	86.36	NA	85.71	NA	85.71	NA	83.33	100.00	90.00	NA	77.78	91.67	91.67	81.82	76.67	78.57	68.00	91.67	88.24	90.00	75.00	84.21	100.00	87.50	80.00	84.21	77.78	87.50	79.06	91.67	12.61	0.015695	0.506009
K	jcn_only_AD	ACTG1	chr17	-	chr17:79479387-79479489;chr17:79479387-79479759;chr17:79479387-79481572;chr17:79479387-79479631	chr17:79479387-79479640		chr17:79479490-79479631;chr17:79479632-79479640;chr17:79479641-79479759;chr17:79479760-79481572	chr17:79479631-79479632;chr17:79479640-79479641;chr17:79479759-79479760;chr17:79481572-79481573		1.39	1.15	1.05	1.49	0.95	0.00	0.99	1.94	2.33	0.89	0.60	0.63	1.11	1.70	1.60	1.10	0.82	0.71	0.00	1.27	1.24	1.27	1.17	0.52	8.33	1.52	1.37	0.68	1.63	0.69	2.10	1.79	0.00	1.02	1.49	1.26	1.05	1.61	0.56	0.840315	0.926053
K	intron_retention		chr19	-	chr19:5592899-5593901				chr19:5592898-5592899;chr19:5593901-5593902		2.17	0.00	3.03	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	6.90	0.00	3.33	1.96	0.00	0.00	0.00	4.41	3.19	0.00	4.44	0.00	4.69	0.00	1.08	1.08	0.747882	1.000000
K	intron_retention		chr11	+	chr11:822024-822396				chr11:822023-822024;chr11:822396-822397		7.55	1.90	4.50	0.00	3.08	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	2.44	0.00	0.00	8.00	4.62	4.11	3.23	4.29	0.00	0.00	4.48	6.15	0.00	3.64	7.14	7.35	7.46	11.54	6.00	4.26	4.88	0.95	4.55	3.60	0.994274	1.000000
K	coord_cassette	UBE2K	chr4	+	chr4:39700011-39776453	chr4:39700011-39747371;chr4:39747431-39757276;chr4:39757360-39776453		chr4:39747372-39747430;chr4:39757277-39757359			100.00	100.00	91.11	100.00	100.00	NA	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	100.00	NA	96.77	94.12	100.00	100.00	100.00	NA	100.00	97.30	100.00	100.00	100.00	95.45	94.44	100.00	100.00	100.00	94.59	100.00	100.00	0.00	0.182284	0.643829
N	alternative_donor	PNPLA6	chr19	+	chr19:7622171-7623735;chr19:7623614-7623735	chr19:7621969-7623735		chr19:7621969-7622170;chr19:7622171-7623613	chr19:7621968-7621969;chr19:7622170-7622171		0.00	12.28	2.82	NA	0.00	NA	3.12	7.32	9.09	0.00	0.00	0.00	2.70	0.00	0.00	8.33	11.11	NA	0.00	1.72	2.13	0.00	5.71	NA	0.00	1.89	0.00	0.00	0.00	NA	0.00	0.00	4.55	0.00	0.00	0.00	2.91	0.86	-2.05	0.396260	0.659113
K	alternative_last_exon	RPL17,RPL17-C18orf32	chr18	-	chr18:47010142-47015728	chr18:47014937-47015728	chr18:47009954-47010141	chr18:47014823-47014936			98.15	99.73	96.50	99.79	99.73	100.00	98.73	96.51	98.82	98.96	98.89	99.07	98.57	97.26	96.10	99.30	99.01	98.52	99.86	93.89	98.71	97.78	98.10	97.86	100.00	95.00	96.99	99.09	99.12	99.80	96.08	97.51	99.83	99.04	98.91	99.51	99.78	96.30	-3.48	0.002094	0.103535
N	jcn_only_AA	ALYREF	chr17	-	chr17:79846286-79846395	chr17:79846295-79846395		chr17:79846286-79846294	chr17:79846285-79846286		93.55	94.27	100.00	97.70	100.00	99.02	100.00	100.00	96.72	100.00	100.00	100.00	98.55	97.73	98.61	98.10	98.68	98.33	96.50	100.00	96.75	95.27	97.52	98.26	95.08	97.62	96.88	98.48	98.04	98.54	96.55	95.00	95.35	99.28	96.61	99.26	95.92	97.68	1.75	0.494031	0.749796
N	jcn_only_AA	CEP250,PLCG1	chr20	+	chr20:34097884-34104810;chr20:34097884-34101855	chr20:34097884-34099191		chr20:34099192-34101855;chr20:34101856-34104810	chr20:34101855-34101856;chr20:34104810-34104811		100.00	98.21	100.00	93.75	94.59	100.00	94.44	NA	91.67	90.91	100.00	NA	91.30	NA	92.31	NA	94.12	NA	91.84	100.00	93.33	88.00	92.86	100.00	95.16	100.00	93.75	93.75	96.00	100.00	100.00	93.55	89.58	96.77	92.86	100.00	93.14	100.00	6.86	0.003583	0.442962
N	coord_cassette	EDC4	chr16	+	chr16:67916769-67917470	chr16:67916769-67916860;chr16:67916910-67917017;chr16:67917081-67917470		chr16:67916861-67916909;chr16:67917018-67917080			100.00	100.00	93.55	95.24	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.75	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	93.94	87.50	100.00	100.00	96.00	100.00	100.00	0.00	0.852629	0.949148
K	cassette	USP4	chr3	-	chr3:49315885-49318176	chr3:49315885-49316246;chr3:49316336-49318176		chr3:49316247-49316335			87.23	81.82	86.79	100.00	84.51	100.00	94.74	94.44	95.65	92.31	95.74	NA	94.23	94.29	96.30	91.30	96.08	NA	90.70	81.63	88.57	84.00	91.36	100.00	74.29	90.57	92.00	91.30	92.31	100.00	84.00	74.60	69.81	95.56	91.30	83.87	86.26	88.90	2.64	0.390483	0.709410
K	intron_retention	MITD1	chr2	-	chr2:99787893-99787972				chr2:99787892-99787893;chr2:99787972-99787973		8.82	0.00	7.94	NA	9.09	NA	0.00	0.00	0.00	NA	0.00	NA	7.14	0.00	0.00	NA	0.00	NA	3.45	6.25	0.00	0.00	6.38	7.14	NA	0.00	3.39	0.00	8.11	4.55	6.25	3.53	3.03	11.11	6.38	14.29	3.03	3.12	0.10	0.994796	1.000000
N	jcn_only_AA	ITFG1	chr16	-	chr16:47196576-47252778;chr16:47249121-47252778	chr16:47196513-47252778		chr16:47196513-47196575;chr16:47196576-47249120	chr16:47196512-47196513;chr16:47196575-47196576		5.56	1.39	3.70	7.14	4.65	NA	5.26	1.96	4.41	5.41	5.97	6.82	5.48	3.03	1.67	6.25	6.25	9.76	4.17	5.66	1.64	0.00	3.28	0.00	0.00	4.92	4.65	0.00	2.38	4.17	4.26	2.67	3.45	4.35	6.52	4.76	3.81	4.59	0.78	0.406015	0.678113
N	cassette	ERCC3	chr2	-	chr2:128018923-128030440	chr2:128018923-128028911;chr2:128029030-128030440		chr2:128028912-128029029			96.77	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	90.91	89.47	100.00	100.00	91.67	100.00	100.00	100.00	0.00	0.230108	0.709176
K	cassette	CCDC84	chr11	+	chr11:118882965-118885703	chr11:118882965-118883941;chr11:118883973-118885703		chr11:118883942-118883972			95.65	100.00	79.31	84.62	85.29	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	90.00	84.62	91.18	82.35	88.24	NA	87.50	100.00	85.29	NA	94.44	100.00	85.71	65.62	83.33	95.24	82.35	77.27	88.75	90.68	1.93	0.811715	0.936947
K	alternative_first_exon	DHRS4L2	chr14	+	chr14:24456483-24459390;chr14:24458285-24459390	chr14:24439542-24459390	chr14:24456439-24456482;chr14:24458027-24458284	chr14:24439083-24439541			0.00	7.84	5.13	0.00	8.70	0.00	6.90	0.00	0.00	6.25	7.69	0.00	20.00	0.00	0.00	8.33	7.41	0.00	0.00	0.00	0.00	NA	9.09	NA	NA	0.00	0.00	NA	16.67	NA	NA	0.00	0.00	NA	NA	0.00	6.90	0.00	-6.90	0.130373	0.308050
K	intron_retention	SF1	chr11	-	chr11:64534552-64534663				chr11:64534551-64534552;chr11:64534663-64534664		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.45	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	cassette	ANXA2	chr15	-	chr15:60678286-60690069;chr15:60656723-60690141;chr15:60682517-60690141;chr15:60678286-60690141;chr15:60685640-60690141;chr15:60688627-60690141	chr15:60678286-60689456,chr15:60656723-60689456,chr15:60688627-60689456,chr15:60682517-60689456,chr15:60685640-60689456;chr15:60689538-60690141,chr15:60689538-60690069		chr15:60689457-60689537			11.49	9.14	8.38	29.66	19.10	45.65	17.72	19.42	16.71	16.04	10.29	15.19	17.77	20.05	15.20	24.56	9.83	13.33	16.48	18.25	18.58	25.20	17.16	24.82	6.45	17.37	13.61	30.85	23.32	32.12	11.13	10.72	10.84	16.49	15.63	17.44	13.66	17.81	4.15	0.240197	0.709176
K	alternative_acceptor	SNRNP35	chr12	+	chr12:123942764-123950084;chr12:123942764-123943510	chr12:123942764-123955638		chr12:123943511-123950084;chr12:123950085-123955638	chr12:123950084-123950085;chr12:123955638-123955639		0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	10.00	0.00	0.00	NA	9.09	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	10.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	AAMP	chr2	-	chr2:219129898-219130093				chr2:219129897-219129898;chr2:219130093-219130094		0.00	0.00	1.41	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	3.64	1.61	2.86	1.45	4.55	10.34	0.00	1.32	0.00	0.00	0.00	6.90	5.26	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.966698	1.000000
K	intron_retention	FHOD1	chr16	-	chr16:67263622-67263695				chr16:67263621-67263622;chr16:67263695-67263696		24.14	13.58	20.93	10.34	16.67	8.00	0.00	0.00	NA	0.00	2.94	NA	0.00	NA	8.33	0.00	4.55	NA	12.80	18.18	15.38	13.33	17.65	NA	17.71	0.00	26.67	7.69	10.29	NA	NA	30.00	16.44	3.23	10.91	0.00	13.19	9.09	-4.10	0.979659	1.000000
K	intron_retention		chr8	+	chr8:144642942-144643171				chr8:144642941-144642942;chr8:144643171-144643172		20.00	27.03	32.94	14.29	16.67	22.03	14.29	9.21	6.15	0.00	0.00	8.70	9.68	13.64	20.69	21.43	12.50	5.88	46.15	36.76	34.72	NA	38.89	57.14	59.26	39.18	57.14	50.00	43.75	43.75	38.55	51.25	42.11	70.00	27.27	65.00	34.57	28.38	-6.19	0.799913	1.000000
K	intron_retention	ABHD17A	chr19	-	chr19:1877687-1879919				chr19:1877686-1877687;chr19:1879919-1879920		40.62	36.73	51.72	43.75	30.38	41.67	0.00	8.33	9.09	0.00	0.00	NA	0.00	10.00	13.64	4.76	5.77	NA	29.03	45.00	33.33	40.00	40.00	NA	37.84	37.50	37.04	41.18	25.00	40.00	55.00	47.22	36.36	27.27	30.43	31.82	32.70	39.06	6.37	0.714789	1.000000
K	alternative_acceptor	ATP5F1,HAX1	chr1	+	chr1:154247478-154247629	chr1:154247478-154247553		chr1:154247554-154247629	chr1:154247629-154247630		7.06	7.78	8.16	3.45	5.49	2.86	0.00	0.00	0.83	2.27	0.00	0.00	1.79	0.00	2.04	0.00	0.00	0.00	5.77	9.59	5.22	8.51	4.12	10.00	13.64	7.79	5.10	7.32	4.17	5.08	9.30	10.62	7.89	6.25	6.33	7.46	6.78	7.42	0.65	0.850462	0.946659
K	jcn_only_AD	SIRPA	chr20	+	chr20:1915401-1917965	chr20:1915413-1917965		chr20:1915401-1915412	chr20:1915400-1915401		8.30	10.98	7.72	7.69	10.00	7.41	6.27	10.20	9.25	9.70	7.92	12.01	9.41	9.62	10.05	11.39	9.26	11.45	0.00	8.32	9.14	6.39	7.76	8.12	9.09	8.70	8.33	9.01	8.30	12.56	5.88	6.12	3.57	10.00	8.20	9.76	7.68	8.51	0.83	0.318639	0.657607
K	intron_retention	NCAPH2	chr22	+	chr22:50961352-50961445				chr22:50961351-50961352;chr22:50961445-50961446		2.50	2.06	5.56	0.00	3.90	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.89	0.00	3.57	0.00	3.92	0.00	2.29	4.17	0.00	0.00	0.00	0.00	5.08	5.36	3.25	0.00	0.00	0.00	1.48	3.33	1.86	0.898037	1.000000
K	intron_retention	PTPN6	chr12	+	chr12:7064017-7064116				chr12:7064016-7064017;chr12:7064116-7064117		95.96	92.11	86.96	83.33	90.38	NA	87.83	89.86	88.00	93.65	91.36	100.00	88.57	95.89	91.67	91.21	93.19	NA	100.00	90.14	88.89	87.18	88.35	80.00	NA	86.79	92.19	83.64	87.69	NA	93.10	85.71	87.50	91.43	91.35	79.17	88.57	91.62	3.05	0.286899	1.000000
K	intron_retention	ABCC3	chr17	+	chr17:48755305-48755453				chr17:48755304-48755305;chr17:48755453-48755454		22.22	25.93	34.95	NA	31.25	NA	6.90	23.08	NA	0.00	17.86	0.00	8.00	NA	12.50	NA	10.53	NA	8.33	36.84	23.08	13.33	34.21	9.52	64.29	45.45	35.62	23.08	30.30	0.00	25.00	36.49	23.08	35.71	35.48	7.69	15.70	25.00	9.30	0.804553	1.000000
K	intron_retention	RRBP1	chr20	-	chr20:17639335-17640624				chr20:17639334-17639335;chr20:17640624-17640625		100.00	100.00	98.28	NA	NA	NA	100.00	95.12	94.64	100.00	93.33	95.86	100.00	94.12	100.00	94.44	94.12	100.00	NA	94.03	100.00	100.00	96.88	95.35	100.00	96.58	98.08	93.55	100.00	100.00	100.00	94.44	NA	97.22	100.00	100.00	100.00	95.85	-4.15	0.063590	1.000000
K	intron_retention		chr19	+	chr19:17387719-17389653				chr19:17387718-17387719;chr19:17389653-17389654		2.17	3.75	6.90	0.00	0.00	2.08	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	3.23	0.00	9.26	0.00	5.26	0.00	3.08	2.86	4.55	2.90	2.11	0.00	4.17	7.32	1.05	1.08	0.03	0.675993	1.000000
K	jcn_only_AA	FDPS	chr1	+	chr1:155289480-155289647	chr1:155289480-155289584		chr1:155289585-155289647	chr1:155289647-155289648		100.00	100.00	97.52	100.00	100.00	100.00	100.00	100.00	98.41	95.71	99.05	96.61	96.69	94.74	100.00	100.00	99.05	100.00	96.55	97.67	96.08	93.94	96.67	97.22	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	98.57	100.00	1.43	0.773288	0.899210
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145013517;chr8:145012861-145016559;chr8:145012861-145027893;chr8:145012861-145017946;chr8:145012861-145024351	chr8:145012861-145047570	chr8:145049345-145049543;chr8:145013518-145013758;chr8:145016560-145016692;chr8:145027894-145028088;chr8:145017947-145018126;chr8:145024352-145025044	chr8:145047571-145047697			7.14	3.70	3.85	NA	NA	NA	0.00	6.45	17.65	4.35	4.81	5.26	0.98	4.65	11.11	3.12	1.76	4.00	0.00	8.33	NA	NA	6.90	0.00	2.04	15.38	14.29	NA	0.00	NA	NA	NA	7.14	6.25	8.57	0.00	1.51	7.14	5.63	0.026943	0.118071
K	cassette	OCIAD1	chr4	+	chr4:48853993-48862741	chr4:48853993-48859229;chr4:48859383-48862741		chr4:48859230-48859382			98.57	100.00	100.00	100.00	97.14	95.00	98.10	96.00	98.04	96.72	100.00	100.00	98.23	100.00	100.00	97.01	100.00	100.00	100.00	100.00	97.59	100.00	100.00	100.00	100.00	96.88	97.67	100.00	97.87	98.28	94.74	100.00	94.44	98.46	97.67	100.00	99.12	97.72	-1.39	0.556051	0.821548
K	alternative_acceptor	MFSD10	chr4	-	chr4:2934137-2934326	chr4:2934240-2934326		chr4:2934137-2934239	chr4:2934136-2934137		100.00	100.00	100.00	NA	94.12	NA	100.00	94.12	95.65	96.30	97.37	92.00	95.45	94.44	89.29	96.55	95.24	95.00	76.92	NA	82.35	86.67	92.59	89.47	100.00	91.67	92.86	90.00	88.46	100.00	NA	NA	100.00	80.00	86.36	92.59	100.00	94.28	-5.72	0.937644	0.983127
K	intron_retention	NAPRT	chr8	-	chr8:144659910-144659985				chr8:144659909-144659910;chr8:144659985-144659986		0.00	14.75	6.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	5.26	0.00	0.00	NA	11.54	NA	12.50	0.00	0.00	NA	0.00	NA	5.00	9.76	10.00	0.00	0.00	5.26	7.63	0.00	-7.63	0.275919	1.000000
N	alternative_donor	CREB3	chr9	+	chr9:35735189-35735302	chr9:35735213-35735302		chr9:35735189-35735212	chr9:35735188-35735189		100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.570521	0.798196
K	intron_retention	MAF1	chr8	+	chr8:145161867-145161990				chr8:145161866-145161867;chr8:145161990-145161991		13.64	5.88	8.96	6.15	4.42	3.39	0.98	0.00	1.37	1.22	2.08	0.00	0.00	0.00	1.64	1.10	0.00	0.00	5.07	9.43	6.98	9.30	5.62	4.26	3.03	0.00	4.92	0.00	1.92	2.94	23.40	12.82	11.36	6.56	3.45	4.62	4.05	4.71	0.67	0.725650	1.000000
N	cassette	CCL5	chr17	-	chr17:34199469-34205556;chr17:34199469-34205531	chr17:34199469-34202564;chr17:34202647-34205531,chr17:34202647-34205556		chr17:34202565-34202646			5.84	0.00	3.04	5.96	2.78	9.67	4.44	7.12	8.04	11.21	8.62	12.16	5.00	6.83	7.22	11.95	6.78	13.66	2.08	6.31	4.09	5.93	3.70	8.48	0.00	7.14	2.45	6.99	7.50	9.02	6.49	3.50	0.00	6.82	2.38	8.62	1.04	6.66	5.62	0.003664	0.214692
K	intron_retention		chr9	+	chr9:140508928-140509010				chr9:140508927-140508928;chr9:140509010-140509011		0.00	8.51	6.98	NA	2.63	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	7.69	4.00	0.00	7.41	3.70	0.00	NA	3.03	0.00	5.56	4.35	3.03	NA	5.26	4.35	3.24	0.00	-3.24	0.977654	1.000000
N	cassette	GPR137	chr11	+	chr11:64054487-64055536;chr11:64054487-64055811	chr11:64054487-64055192;chr11:64055419-64055811,chr11:64055419-64055536		chr11:64055193-64055418			94.74	57.69	84.00	NA	62.50	NA	100.00	95.45	90.00	100.00	93.75	NA	94.12	100.00	89.29	NA	NA	NA	64.71	88.89	94.44	NA	83.33	NA	80.00	88.24	80.77	NA	80.00	NA	88.89	76.92	71.43	NA	75.00	80.00	75.72	91.81	16.10	0.083670	0.641134
K	intron_retention	THAP7	chr22	-	chr22:21355077-21355544				chr22:21355076-21355077;chr22:21355544-21355545		66.67	45.45	59.09	33.33	44.00	NA	11.76	NA	16.67	4.17	16.00	NA	25.00	9.09	20.00	10.00	12.00	NA	30.00	46.67	25.00	16.67	38.10	0.00	38.46	NA	52.38	NA	21.05	7.69	38.46	45.83	38.10	NA	36.84	NA	34.05	42.56	8.52	0.764054	1.000000
K	jcn_only_AA	ANAPC5	chr12	-	chr12:121756208-121756303;chr12:121756155-121756303	chr12:121756228-121756303		chr12:121756155-121756207;chr12:121756208-121756227	chr12:121756154-121756155;chr12:121756207-121756208		89.66	82.69	86.36	81.25	98.36	NA	90.00	100.00	100.00	96.88	96.43	88.89	85.92	100.00	82.93	97.14	95.52	92.31	77.78	100.00	79.59	86.96	91.67	93.33	100.00	NA	94.59	92.86	94.00	94.12	92.31	75.68	83.33	89.74	90.20	84.38	84.62	100.00	15.38	0.033187	0.663989
N	alternative_donor	RNF213	chr17	+	chr17:78362490-78362972	chr17:78362663-78362972		chr17:78362490-78362662	chr17:78362489-78362490		3.47	5.00	2.59	6.67	0.00	0.00	0.00	0.92	1.33	1.43	0.00	0.71	0.00	0.97	1.64	2.24	0.00	1.23	NA	2.20	0.00	0.00	2.56	3.27	0.00	2.04	1.06	4.86	0.00	2.21	1.34	2.33	0.00	4.76	1.96	3.37	0.00	1.69	1.69	0.476847	0.735917
N	jcn_only_AA	RAE1,RPRD1B	chr20	+	chr20:55949858-55953068	chr20:55949858-55951234		chr20:55951235-55953068	chr20:55953068-55953069		0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	4.35	0.00	0.00	0.00	0.00	16.67	0.00	5.71	5.26	0.00	0.00	0.00	0.00	0.00	1.92	3.45	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	8.33	0.00	1.56	1.56	0.139362	0.663989
K	intron_retention	CSK	chr15	+	chr15:75094232-75094337				chr15:75094231-75094232;chr15:75094337-75094338		3.75	0.00	3.30	0.00	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	2.44	0.00	0.00	1.22	4.76	0.00	0.78	0.00	0.00	1.01	0.00	5.65	2.60	4.84	0.00	1.83	2.04	0.00	1.61	1.61	0.917353	1.000000
K	intron_retention		chr9	-	chr9:139756798-139757357				chr9:139756797-139756798;chr9:139757357-139757358		5.38	3.70	4.04	6.68	5.51	7.36	2.70	2.19	1.81	2.99	3.02	3.21	3.61	4.11	3.71	5.54	4.12	2.29	5.26	6.19	5.42	8.53	6.52	11.23	3.99	4.32	3.49	5.45	5.98	6.42	11.39	8.44	5.49	5.98	4.56	6.09	3.85	4.85	1.00	0.874394	1.000000
N	jcn_only_AA	GUK1	chr1	+	chr1:228333769-228334561;chr1:228333769-228334503	chr1:228333769-228334542		chr1:228334504-228334542;chr1:228334543-228334561	chr1:228334542-228334543;chr1:228334561-228334562		95.02	97.72	95.08	93.60	95.45	93.29	94.81	96.09	96.46	95.03	96.48	96.31	96.71	93.60	94.69	94.25	96.12	96.55	93.04	93.41	92.95	94.90	95.84	96.20	95.45	96.95	94.22	94.05	93.55	93.01	92.86	91.25	95.15	97.23	94.43	95.28	95.30	94.31	-0.99	0.399690	0.671467
K	intron_retention	FAM160B2	chr8	+	chr8:21960140-21960303				chr8:21960139-21960140;chr8:21960303-21960304		13.33	29.41	18.75	NA	4.35	NA	0.00	0.00	0.00	NA	0.00	NA	4.55	0.00	0.00	0.00	0.00	NA	NA	7.69	8.33	7.14	9.68	7.69	25.00	0.00	11.43	NA	5.00	0.00	15.38	9.09	0.00	11.11	5.88	8.00	4.55	3.85	-0.70	0.767878	1.000000
N	jcn_only_AD	GRK6	chr5	+	chr5:176860667-176860914;chr5:176860671-176860914	chr5:176860678-176860914		chr5:176860667-176860670;chr5:176860671-176860677	chr5:176860666-176860667;chr5:176860670-176860671		93.94	100.00	96.43	NA	100.00	NA	95.24	100.00	100.00	95.65	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	95.83	100.00	94.74	NA	NA	100.00	94.74	100.00	100.00	NA	100.00	93.62	100.00	96.67	100.00	81.82	100.00	100.00	0.00	0.911534	0.957274
K	intron_retention	STXBP2	chr19	+	chr19:7707935-7708050				chr19:7707934-7707935;chr19:7708050-7708051		2.50	3.29	6.69	0.00	4.08	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	1.39	0.56	3.64	2.76	4.48	8.97	1.33	3.67	3.45	0.88	1.41	1.02	2.80	0.00	4.62	3.31	4.27	0.00	1.27	1.27	0.884729	1.000000
K	intron_retention	RP5-940J5.9	chr12	-	chr12:6647152-6647306				chr12:6647151-6647152;chr12:6647306-6647307		78.79	80.82	77.54	80.70	79.99	84.19	74.78	77.20	75.39	83.70	83.40	84.93	75.58	76.97	76.83	72.30	81.81	83.76	79.16	75.40	76.06	75.95	74.27	79.82	82.35	75.31	77.63	77.81	76.62	76.50	74.28	75.85	78.98	80.22	81.61	80.81	79.07	76.19	-2.88	0.466717	1.000000
K	intron_retention	FBXW5	chr9	-	chr9:139835624-139835702				chr9:139835623-139835624;chr9:139835702-139835703		7.35	6.10	7.14	6.33	4.40	3.90	0.00	0.00	0.00	0.00	1.54	0.00	0.00	1.28	0.84	2.38	0.00	0.00	6.85	5.17	3.87	5.77	6.25	4.44	0.00	3.17	2.15	5.66	4.44	5.48	9.09	7.91	10.34	2.17	9.33	1.27	3.05	4.17	1.12	0.887755	1.000000
K	intron_retention	SUGP2	chr19	-	chr19:19104550-19105174				chr19:19104549-19104550;chr19:19105174-19105175		8.70	0.00	14.00	0.00	0.00	0.00	8.33	0.00	NA	NA	5.26	NA	15.38	10.00	18.18	6.67	6.67	NA	1.14	7.14	2.33	3.23	6.25	13.04	0.00	17.65	7.32	0.00	1.82	0.00	0.00	4.65	0.00	8.62	9.43	13.04	0.57	7.92	7.35	0.442387	1.000000
N	intron_retention	BAX	chr19	+	chr19:49464172-49464739				chr19:49464171-49464172;chr19:49464739-49464740		63.64	68.90	68.25	60.26	75.84	60.00	63.64	50.00	65.91	84.00	74.29	70.00	63.16	70.45	73.61	67.39	78.26	90.00	58.65	56.52	52.99	66.00	78.95	61.90	73.44	67.27	77.33	73.58	75.90	65.79	62.50	58.33	60.62	66.22	77.50	60.00	63.40	63.07	-0.33	0.484100	1.000000
K	alternative_acceptor	SH3BP1	chr22	+	chr22:38038623-38038905	chr22:38038623-38038901		chr22:38038902-38038905	chr22:38038905-38038906		95.45	100.00	97.73	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	96.88	NA	84.62	100.00	92.68	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	0.00	0.506437	0.796773
K	coord_cassette	FRG1	chr4	+	chr4:190873443-190878552	chr4:190873443-190874222;chr4:190874281-190876191;chr4:190876307-190878552		chr4:190874223-190874280;chr4:190876192-190876306			73.68	52.69	65.12	72.73	65.88	52.94	64.71	58.49	59.46	61.54	59.72	44.74	49.28	40.00	38.71	60.87	41.46	40.00	88.89	90.91	85.00	77.78	89.13	94.44	100.00	87.23	93.10	90.00	87.93	86.21	57.14	61.70	53.95	50.00	49.12	52.00	59.33	66.09	6.76	0.977241	0.987304
K	intron_retention		chr19	+	chr19:36037711-36037846				chr19:36037710-36037711;chr19:36037846-36037847		0.00	0.00	2.17	3.57	3.42	1.43	0.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.53	0.00	1.16	0.00	1.19	6.94	2.68	2.86	1.14	0.00	0.00	1.79	4.07	3.57	3.45	4.44	1.09	0.00	0.00	2.42	0.89	0.00	-0.89	0.929481	1.000000
K	intron_retention	MTMR14	chr3	+	chr3:9739551-9743473				chr3:9739550-9739551;chr3:9743473-9743474		8.57	8.64	10.71	5.56	4.00	3.57	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.12	4.00	4.44	4.00	3.77	5.88	15.15	12.50	9.52	3.33	5.13	0.00	7.14	7.69	6.94	5.00	6.56	8.11	6.53	5.57	-0.96	0.977915	1.000000
N	alternative_donor	TNFAIP2	chr14	+	chr14:103590251-103590711;chr14:103589821-103590711	chr14:103590289-103590711		chr14:103589821-103590250;chr14:103590251-103590288	chr14:103589820-103589821;chr14:103590250-103590251		76.47	89.47	80.00	NA	NA	NA	90.91	91.43	95.51	93.58	84.21	86.82	87.88	97.83	94.76	93.79	86.96	90.21	NA	48.28	NA	89.80	78.12	96.00	86.36	87.04	92.00	88.89	90.91	89.52	50.00	89.29	NA	90.00	80.77	94.64	88.67	81.75	-6.92	0.183353	0.563271
N	cassette	CYC1	chr8	+	chr8:145150132-145151239	chr8:145150132-145151026;chr8:145151154-145151239		chr8:145151027-145151153			100.00	91.23	95.45	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	96.15	98.11	99.22	100.00	0.78	0.150436	0.709176
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145013517;chr8:145012861-145047570;chr8:145012861-145027893;chr8:145012861-145017946;chr8:145012861-145024351	chr8:145012861-145016559	chr8:145049345-145049543;chr8:145013518-145013758;chr8:145047571-145047697;chr8:145027894-145028088;chr8:145017947-145018126;chr8:145024352-145025044	chr8:145016560-145016692			0.00	0.00	0.00	NA	NA	NA	1.72	0.00	0.00	0.00	1.92	0.00	0.98	0.00	0.00	1.56	0.59	0.00	0.00	0.00	NA	NA	0.00	0.00	6.12	0.00	0.00	NA	5.56	NA	NA	NA	0.00	0.00	0.00	0.00	0.49	0.00	-0.49	0.191273	0.394686
N	alternative_acceptor	PAX8-AS1	chr2	+	chr2:234070473-234072399	chr2:234070473-234072352		chr2:234072353-234072399	chr2:234072399-234072400		100.00	100.00	81.82	NA	NA	NA	100.00	100.00	100.00	NA	88.46	NA	93.85	100.00	NA	NA	92.31	NA	NA	100.00	NA	NA	100.00	NA	92.86	89.47	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	96.92	100.00	3.08	0.682959	0.881289
K	cassette	STAMBP	chr2	+	chr2:74087279-74089329	chr2:74087279-74087660;chr2:74087717-74089329		chr2:74087661-74087716			4.55	8.70	14.81	NA	5.00	NA	0.00	0.00	6.67	0.00	0.00	0.00	2.50	4.17	1.92	6.25	3.57	0.00	9.09	4.35	5.88	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.14	0.00	5.88	0.00	12.50	4.35	6.67	2.50	2.08	-0.42	0.436475	0.742855
K	cassette	OGFOD3	chr17	-	chr17:80350411-80356071	chr17:80350411-80352206;chr17:80352420-80356071		chr17:80352207-80352419			40.00	22.32	46.67	24.00	23.38	19.74	28.89	25.00	54.55	30.43	36.67	23.53	37.14	NA	66.67	41.18	32.26	33.33	30.59	NA	39.53	31.25	59.38	38.46	24.05	30.00	42.86	25.00	32.14	36.00	35.29	46.15	25.25	38.89	37.50	34.38	27.07	32.64	5.57	0.294636	0.709176
N	cassette	LUC7L	chr16	-	chr16:240135-242925	chr16:240135-240539;chr16:240570-242925		chr16:240540-240569			100.00	82.61	91.53	88.24	96.39	89.69	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.55	86.21	90.48	89.66	88.00	96.15	90.00	100.00	92.00	93.22	93.65	93.42	78.79	90.38	93.51	88.68	93.48	90.67	92.53	100.00	7.47	0.799358	0.936947
K	jcn_only_AD	WBSCR22	chr7	+	chr7:73098331-73100965;chr7:73098135-73100965	chr7:73098232-73100965		chr7:73098135-73098231;chr7:73098232-73098330	chr7:73098134-73098135;chr7:73098231-73098232		0.00	0.00	2.04	0.00	0.00	NA	1.16	0.00	3.12	1.92	0.00	0.00	2.27	7.14	1.85	0.00	0.00	2.17	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.638777	0.818639
K	intron_retention	SUPT6H	chr17	+	chr17:26989361-27000388				chr17:26989360-26989361;chr17:27000388-27000389		0.00	0.00	5.77	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	6.45	0.00	8.33	0.00	NA	NA	NA	NA	0.00	5.26	0.00	9.52	0.00	10.00	0.00	NA	NA	6.67	NA	18.18	8.33	15.15	0.00	0.00	0.00	0.873223	1.000000
K	intron_retention		chr1	+	chr1:228333326-228333726				chr1:228333325-228333326;chr1:228333726-228333727		3.33	3.05	4.05	0.61	1.00	0.83	0.35	1.21	0.94	0.30	0.00	0.00	0.97	0.59	1.46	0.41	0.44	0.54	0.81	2.67	1.20	2.56	2.63	2.90	2.36	2.91	3.43	2.10	2.11	2.56	2.92	5.28	0.92	1.49	2.54	2.21	0.95	2.79	1.84	0.663299	1.000000
N	alternative_acceptor	MCOLN1	chr19	+	chr19:7594599-7595320;chr19:7594599-7595171	chr19:7594599-7595255		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.97	3.70	6.15	3.66	0.00	0.00	0.00	2.78	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.215303	0.671511
K	cassette	BECN1	chr17	-	chr17:40966692-40970238	chr17:40966692-40967925;chr17:40968073-40970238		chr17:40967926-40968072			100.00	100.00	100.00	NA	96.67	NA	100.00	100.00	100.00	100.00	98.44	92.86	98.72	100.00	97.22	96.43	95.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	EIF5B	chr2	+	chr2:100015373-100015769				chr2:100015372-100015373;chr2:100015769-100015770		5.00	5.08	4.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	0.00	7.14	10.53	3.92	3.33	4.00	7.50	0.00	NA	3.45	2.27	0.00	3.70	13.64	9.68	6.12	2.17	5.00	2.27	2.54	5.00	2.46	0.964255	1.000000
K	intron_retention	TMEM259	chr19	-	chr19:1009861-1010175				chr19:1009860-1009861;chr19:1010175-1010176		95.39	93.62	100.00	97.79	96.67	96.13	100.00	100.00	96.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.75	100.00	97.00	100.00	100.00	98.18	94.44	95.18	95.03	97.85	97.33	100.00	100.00	97.67	96.92	100.00	100.00	97.44	96.84	100.00	3.16	0.577382	1.000000
N	jcn_only_AA		chr10	-	chr10:73577388-73578373;chr10:73578091-73578373;chr10:73577252-73578373;chr10:73576165-73578373	chr10:73577460-73578373					60.00	54.55	40.74	NA	50.00	0.00	54.84	68.97	73.08	44.44	65.96	83.33	69.23	68.75	66.67	56.25	68.75	100.00	7.69	62.50	47.06	65.22	62.50	70.00	0.00	73.33	76.47	72.73	50.00	58.33	66.67	58.06	21.05	48.15	57.14	61.90	37.80	67.71	29.91	0.040062	0.663989
K	alternative_acceptor	RPS9	chr19	+	chr19:54710331-54711265	chr19:54710331-54710420		chr19:54710421-54711265	chr19:54711265-54711266		8.15	2.63	6.59	4.47	2.29	3.42	0.80	2.95	4.45	1.85	0.88	0.89	0.56	2.93	2.73	2.44	0.89	0.91	2.26	7.62	4.22	8.39	3.60	8.46	1.92	4.78	5.37	4.22	2.04	3.96	7.34	6.88	2.64	4.30	3.15	6.59	2.09	6.06	3.97	0.009226	0.466251
K	intron_retention		chr6	+	chr6:43415147-43415421				chr6:43415146-43415147;chr6:43415421-43415422		11.76	21.43	12.50	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	10.71	NA	NA	NA	0.00	16.67	0.00	NA	15.00	NA	NA	0.00	10.00	NA	16.67	NA	NA	16.00	NA	16.67	14.29	26.32	0.00	0.00	0.00	0.923168	1.000000
K	alternative_donor	RPL6	chr12	-	chr12:112846461-112847390	chr12:112846461-112847214		chr12:112847215-112847390	chr12:112847390-112847391		44.44	17.14	42.42	29.41	17.02	40.00	14.52	NA	34.38	21.67	17.65	14.29	14.75	40.00	31.25	22.06	19.77	10.53	6.67	20.00	12.24	16.67	10.68	NA	NA	50.00	45.83	11.36	8.43	11.90	17.86	24.53	7.14	33.33	31.43	32.50	14.52	40.00	25.48	0.023583	0.295391
N	alternative_acceptor	CC2D1B	chr1	-	chr1:52818896-52819189	chr1:52818933-52819189		chr1:52818896-52818932	chr1:52818895-52818896		11.67	6.58	4.17	4.88	6.25	3.92	4.55	0.00	0.00	0.00	0.00	5.00	3.45	0.00	5.00	4.55	0.00	0.00	3.70	6.06	1.75	4.76	6.25	8.51	5.26	4.88	8.70	3.33	5.56	6.12	4.17	5.21	5.36	8.77	6.67	4.35	4.90	4.53	-0.38	0.854224	0.947480
N	alternative_acceptor	TIMM10	chr11	-	chr11:57297708-57298130;chr11:57298012-57298130	chr11:57297767-57298130		chr11:57297708-57297766;chr11:57297767-57298011	chr11:57297707-57297708;chr11:57297766-57297767		9.09	0.00	0.00	0.00	0.00	4.00	3.08	NA	NA	5.08	2.30	0.00	0.00	NA	6.67	2.50	5.88	2.86	0.00	5.26	6.06	6.06	2.27	9.09	7.41	16.67	0.00	3.12	0.00	5.88	17.65	10.00	0.00	0.00	0.00	4.35	0.00	12.88	12.88	0.031884	0.559965
N	jcn_only_AA		chr12	+	chr12:57574263-57574457	chr12:57574263-57574449		chr12:57574450-57574457	chr12:57574457-57574458		93.75	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.386777	0.663989
K	alternative_acceptor	TPM3	chr1	-	chr1:154148656-154155463	chr1:154148725-154155463		chr1:154148656-154148724	chr1:154148655-154148656		97.37	95.74	96.48	100.00	94.12	NA	97.12	96.61	96.61	95.42	95.70	96.80	95.25	97.02	96.67	97.30	96.38	96.13	100.00	98.33	100.00	99.33	98.68	98.02	100.00	95.90	95.68	97.67	99.30	97.39	99.12	95.12	100.00	96.15	98.35	97.33	98.56	97.19	-1.37	0.563589	0.831573
N	alternative_acceptor	PYCR2,RP4-559A3.7	chr1	-	chr1:226110084-226111400	chr1:226110754-226111400		chr1:226110084-226110753	chr1:226110083-226110084		12.20	14.63	14.47	NA	12.50	NA	1.82	3.57	1.37	0.00	2.78	0.00	2.99	4.55	4.62	4.26	4.35	0.00	5.00	9.52	9.09	21.74	21.15	27.27	0.00	8.57	11.48	18.75	13.64	20.00	6.25	9.52	8.33	14.81	15.56	25.00	4.00	7.41	3.42	0.458295	0.761890
N	alternative_acceptor	TYK2	chr19	-	chr19:10473334-10475289	chr19:10473355-10475289		chr19:10473334-10473354	chr19:10473333-10473334		2.38	0.00	1.75	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	NA	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.38	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	SYMPK	chr19	-	chr19:46319832-46320055;chr19:46319836-46320055	chr19:46319873-46320055		chr19:46319832-46319835;chr19:46319836-46319872	chr19:46319831-46319832;chr19:46319835-46319836		0.00	2.25	4.44	5.56	4.76	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	4.12	0.00	2.70	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	2.44	2.31	5.88	0.00	0.00	0.00	0.00	0.00	0.941112	0.980705
K	jcn_only_AD	MRPL21	chr11	-	chr11:68665481-68668015	chr11:68665481-68668002		chr11:68668003-68668015	chr11:68668015-68668016		8.57	8.05	6.98	12.77	8.14	6.67	4.35	NA	0.00	0.00	0.00	0.00	7.14	0.00	6.45	3.51	3.57	3.70	4.76	0.00	5.26	0.00	6.67	8.82	0.00	0.00	6.67	0.00	4.84	0.00	0.00	8.57	4.62	2.44	6.90	4.08	4.69	0.00	-4.69	0.174288	0.657607
N	jcn_only_AA	ACIN1	chr14	-	chr14:23533386-23533563;chr14:23533431-23533563	chr14:23533467-23533563		chr14:23533386-23533430;chr14:23533431-23533466	chr14:23533385-23533386;chr14:23533430-23533431		84.72	77.46	84.38	90.91	80.95	NA	78.95	73.44	77.27	74.07	76.92	62.50	72.88	75.47	72.06	72.00	73.81	76.47	86.36	85.27	76.92	84.29	77.93	83.78	100.00	86.21	75.00	71.05	78.26	80.00	84.42	85.08	83.33	77.88	77.78	80.49	81.14	84.57	3.43	0.735013	0.881383
K	intron_retention	GSK3A	chr19	-	chr19:42736835-42737261				chr19:42736834-42736835;chr19:42737261-42737262		2.70	0.00	3.23	0.00	2.44	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	2.99	0.00	0.00	2.86	0.00	NA	0.00	1.27	2.38	0.00	4.17	1.89	1.25	18.75	0.00	0.00	3.23	0.00	0.94	0.94	0.780112	1.000000
K	jcn_only_AA	RABL6	chr9	+	chr9:139726314-139726716	chr9:139726314-139726713		chr9:139726714-139726716	chr9:139726716-139726717		0.00	0.00	2.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	7.69	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	ASCC2	chr22	-	chr22:30198128-30200626;chr22:30198123-30200626;chr22:30198231-30200626	chr22:30198198-30200626		chr22:30198123-30198127;chr22:30198128-30198197;chr22:30198198-30198230	chr22:30198122-30198123;chr22:30198127-30198128;chr22:30198197-30198198		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	90.48	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.692350	0.864632
N	alternative_donor	TNFRSF14	chr1	+	chr1:2493112-2493215;chr1:2493114-2493215	chr1:2492154-2493215		chr1:2492154-2493111;chr1:2493112-2493113	chr1:2492153-2492154;chr1:2493111-2493112		25.00	30.56	25.00	47.62	43.75	50.00	60.00	NA	70.00	54.55	46.67	NA	23.08	NA	35.29	61.90	33.33	NA	31.58	17.86	42.86	28.12	23.21	17.95	31.43	15.79	22.73	37.04	41.67	42.86	25.00	27.27	47.62	28.57	13.89	22.22	31.50	21.43	-10.07	0.031874	0.340828
K	intron_retention	CXXC1	chr18	-	chr18:47809377-47809634				chr18:47809376-47809377;chr18:47809634-47809635		8.22	9.66	12.09	11.11	13.39	5.71	0.00	0.00	4.00	0.00	8.00	NA	0.00	0.00	4.76	0.00	11.76	NA	7.32	8.33	10.10	0.00	7.79	12.50	11.41	4.17	9.23	4.17	14.93	13.04	12.00	9.65	4.52	8.70	11.76	13.64	5.92	6.20	0.28	0.757574	1.000000
N	jcn_only_AA	SRRM2	chr16	+	chr16:2819286-2820352;chr16:2819286-2820361;chr16:2819286-2819862	chr16:2819286-2819628		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		1.47	0.00	3.87	4.35	2.44	0.00	1.59	6.12	5.49	2.86	0.00	3.33	2.41	5.17	5.43	0.00	0.00	0.00	0.95	1.02	3.42	3.75	0.57	3.23	0.00	7.46	3.62	2.53	4.13	5.41	1.85	2.20	0.00	3.00	0.00	3.08	0.47	3.51	3.03	0.042437	0.663989
N	cassette	CUEDC1	chr17	-	chr17:55945605-55948646	chr17:55945605-55946482;chr17:55946555-55948646		chr17:55946483-55946554			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	84.62	NA	NA	87.88	100.00	100.00	95.12	100.00	100.00	100.00	100.00	88.89	94.74	100.00	100.00	100.00	100.00	100.00	97.56	-2.44	0.111253	0.708559
N	intron_retention		chr17	-	chr17:7529933-7530460				chr17:7529932-7529933;chr17:7530460-7530461		72.73	72.73	100.00	NA	68.75	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	57.69	68.18	73.68	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	70.37	80.77	66.67	73.33	69.23	100.00	69.70	71.55	1.85	0.918400	1.000000
N	jcn_only_AD	TMEM255B	chr13	+	chr13:114462289-114469087	chr13:114464321-114469087		chr13:114462289-114464320	chr13:114462288-114462289		0.00	0.00	NA	11.76	7.14	NA	0.00	NA	NA	0.00	0.00	0.00	5.26	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
N	alternative_acceptor	RELA	chr11	-	chr11:65423407-65425757	chr11:65424163-65425757		chr11:65423407-65424162	chr11:65423406-65423407		2.94	5.88	4.05	5.26	0.00	0.00	0.00	0.38	0.37	0.00	0.00	0.00	0.00	0.34	0.68	0.59	1.01	0.31	NA	2.36	3.33	4.76	1.52	4.08	NA	2.75	3.17	2.99	2.00	2.50	6.14	4.58	7.14	4.88	3.51	3.65	2.94	2.55	-0.39	0.729650	0.900154
K	cassette	COPS5	chr8	-	chr8:67958196-67963464	chr8:67958196-67959919;chr8:67960095-67963464		chr8:67959920-67960094			3.57	0.00	3.90	0.00	1.18	0.00	1.75	0.00	1.89	0.00	2.56	0.00	0.00	6.25	1.59	0.00	0.00	0.00	1.43	3.77	0.00	5.71	2.60	7.69	0.00	4.55	4.55	0.00	1.28	4.88	3.03	4.00	1.45	2.22	2.90	2.22	0.71	3.67	2.96	0.020309	0.390745
N	alternative_acceptor		chr7	+	chr7:27856658-27867360;chr7:27856658-27867333	chr7:27856658-27867356		chr7:27867334-27867356;chr7:27867357-27867360	chr7:27867356-27867357;chr7:27867360-27867361		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.63	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	98.36	100.00	100.00	0.00	0.592751	0.844088
K	intron_retention	METTL23	chr17	+	chr17:74729298-74729374				chr17:74729297-74729298;chr17:74729374-74729375		3.85	4.55	11.54	6.67	7.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.88	5.00	11.11	8.33	6.00	13.33	0.00	12.50	12.20	6.25	5.00	12.50	16.67	14.29	7.50	4.00	3.12	15.00	2.27	4.42	2.15	0.883329	1.000000
K	intron_retention		chr12	-	chr12:58142401-58142964				chr12:58142400-58142401;chr12:58142964-58142965		5.00	0.00	10.00	1.61	1.41	0.00	1.14	0.00	2.44	0.75	2.22	6.06	1.98	0.00	5.66	1.37	0.00	3.45	1.28	15.79	0.00	1.49	0.00	2.70	0.00	15.38	9.68	1.85	2.47	3.45	3.85	10.71	2.47	0.00	3.80	1.89	1.21	4.42	3.21	0.296171	1.000000
K	intron_retention	ABHD17A	chr19	-	chr19:1877687-1878662				chr19:1877686-1877687;chr19:1878662-1878663		100.00	100.00	100.00	100.00	95.83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	92.86	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.30	90.91	92.59	NA	100.00	96.55	100.00	100.00	95.24	100.00	100.00	100.00	0.00	0.629122	1.000000
N	alternative_donor	GGA1	chr22	+	chr22:38014554-38016244	chr22:38016027-38016244		chr22:38014554-38016026	chr22:38014553-38014554		2.70	6.67	3.06	NA	0.00	NA	1.47	3.70	0.00	2.56	1.18	0.00	1.28	3.12	3.33	0.00	0.00	0.00	8.33	1.89	0.00	2.78	2.02	0.00	7.14	2.17	2.82	2.63	4.08	NA	0.00	2.94	9.09	1.25	1.74	0.00	6.90	2.44	-4.47	0.060812	0.421463
N	alternative_acceptor	CCNY	chr10	+	chr10:35855114-35857981	chr10:35855114-35856846		chr10:35856847-35857981	chr10:35857981-35857982		5.00	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	2.33	1.72	2.63	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention		chr12	+	chr12:113346630-113348855				chr12:113346629-113346630;chr12:113348855-113348856		1.19	0.00	1.85	NA	NA	25.93	1.57	0.47	0.36	1.45	0.00	0.94	1.64	0.38	0.78	1.45	2.38	1.98	NA	1.06	4.65	0.00	0.00	2.55	0.00	0.74	0.00	0.61	0.00	1.36	1.70	1.84	NA	5.80	0.00	2.89	0.79	0.90	0.11	0.911072	1.000000
K	alternative_donor	DBNL	chr7	+	chr7:44084442-44089823;chr7:44084466-44089823	chr7:44084420-44089823		chr7:44084420-44084441;chr7:44084442-44084465	chr7:44084419-44084420;chr7:44084441-44084442		100.00	95.35	98.90	100.00	100.00	100.00	100.00	100.00	99.50	98.66	99.16	98.74	100.00	99.63	99.57	99.46	99.65	100.00	81.82	100.00	100.00	100.00	98.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	86.67	100.00	100.00	100.00	97.67	100.00	2.33	0.139526	0.551111
K	cassette	RBCK1	chr20	+	chr20:400376-402770	chr20:400376-401514;chr20:401676-402770		chr20:401515-401675			88.89	100.00	84.21	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.26	95.38	100.00	95.00	100.00	NA	86.67	81.25	NA	100.00	100.00	100.00	96.61	91.67	100.00	93.75	100.00	84.44	76.32	NA	90.00	100.00	90.91	100.00	92.75	-7.25	0.032904	0.454045
K	jcn_only_AD	ANP32A	chr15	-	chr15:69080259-69109888;chr15:69080259-69113036;chr15:69080259-69081581	chr15:69080259-69109723		chr15:69081582-69109723;chr15:69109724-69109888;chr15:69109889-69113036	chr15:69109723-69109724;chr15:69109888-69109889;chr15:69113036-69113037		0.00	3.60	3.92	NA	8.77	NA	2.01	6.82	3.09	0.00	7.25	0.00	1.55	5.56	1.20	2.70	2.38	0.00	9.23	0.00	3.92	9.38	4.92	7.41	0.00	0.00	0.00	0.00	2.38	0.00	5.56	2.20	4.29	2.50	5.38	4.88	2.80	2.78	-0.02	0.813326	0.912862
N	alternative_first_exon	AC135048.13,ORAI3	chr16	+	chr16:30964653-30967520;chr16:30958270-30967520;chr16:30960839-30967520	chr16:30964782-30967520	chr16:30958051-30958269;chr16:30960387-30960838	chr16:30964506-30964781			81.25	69.88	75.81	53.85	69.39	60.00	84.78	88.24	92.31	66.67	82.93	NA	81.13	94.12	88.46	72.73	89.19	NA	73.47	70.37	72.97	58.33	75.00	66.67	76.47	86.67	74.51	50.00	62.22	60.00	76.19	72.58	59.32	70.83	78.79	59.38	74.97	83.96	8.99	0.121210	0.296909
N	alternative_acceptor	NAGK	chr2	+	chr2:71299882-71299955;chr2:71299882-71300611	chr2:71299882-71300592		chr2:71299956-71300592;chr2:71300593-71300611	chr2:71300592-71300593;chr2:71300611-71300612		5.51	3.61	2.17	0.00	1.65	1.82	0.39	1.35	1.16	0.00	0.46	0.39	0.88	1.52	0.75	0.99	1.33	0.52	2.76	3.96	1.41	2.41	2.38	1.47	2.56	4.11	5.26	3.12	1.88	0.43	3.45	5.71	3.35	2.70	2.20	2.59	2.66	3.71	1.04	0.242969	0.697467
N	jcn_only_AA	GIGYF1	chr7	-	chr7:100279395-100279486	chr7:100279412-100279486		chr7:100279395-100279411	chr7:100279394-100279395		11.43	0.00	8.16	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	7.69	NA	13.33	0.00	0.00	NA	NA	NA	0.00	3.03	NA	0.00	0.00	9.09	0.00	0.00	0.00	0.917441	0.971511
N	cassette	PFDN5	chr12	+	chr12:53689676-53691633;chr12:53689726-53691633;chr12:53689726-53691607;chr12:53689424-53691633	chr12:53689424-53690027,chr12:53689726-53690027,chr12:53689676-53690027;chr12:53690060-53691607,chr12:53690060-53691633		chr12:53690028-53690059			54.86	67.27	59.85	70.86	75.26	73.47	79.68	78.33	76.73	75.81	76.64	78.75	80.81	75.54	73.25	77.83	77.42	78.87	58.41	54.23	62.68	57.26	63.95	65.30	78.00	73.30	71.70	81.17	81.86	81.14	47.35	50.38	56.51	65.46	66.32	66.00	72.63	64.08	-8.55	0.400354	0.715834
K	alternative_first_exon	HDGF	chr1	-	chr1:156715166-156717226,chr1:156715166-156718080,chr1:156715166-156719655,chr1:156715166-156720181,chr1:156715166-156721040,chr1:156715166-156737130;chr1:156715166-156722020,chr1:156715166-156721829;chr1:156715166-156721134	chr1:156715166-156725328	chr1:156722021-156722025;chr1:156721135-156721536	chr1:156725329-156725456			0.00	0.00	0.00	NA	5.26	NA	0.00	0.00	1.41	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.35	0.00	4.35	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	1.85	NA	0.00	0.00	2.63	0.00	0.00	0.00	0.183156	0.392065
N	alternative_acceptor		chr8	.	chr8:15978690-16001066;chr8:15998555-16001066;chr8:15998564-16001066;chr8:15998463-16001066	chr8:15998566-16001066		chr8:15978690-15998462;chr8:15998463-15998554;chr8:15998555-15998563;chr8:15998564-15998565	chr8:15978689-15978690;chr8:15998462-15998463;chr8:15998554-15998555;chr8:15998563-15998564		0.00	8.33	NA	NA	3.70	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.72	0.00	14.29	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	13.33	0.00	0.00	0.00	8.33	0.00	-8.33	0.081517	0.585944
K	intron_retention	DOCK8	chr9	+	chr9:464279-465072				chr9:464278-464279;chr9:465072-465073		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.57	100.00	100.00	NA	100.00	100.00	96.19	97.83	100.00	100.00	94.83	94.74	100.00	100.00	100.00	100.00	100.00	100.00	96.10	98.91	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.942652	1.000000
N	jcn_only_AA	KIAA0196	chr8	-	chr8:126044824-126049478;chr8:126044637-126049478	chr8:126048463-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		0.00	0.00	0.00	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.55	NA	0.00	4.00	0.00	0.00	1.54	NA	NA	0.00	2.27	0.00	0.00	NA	4.76	0.00	0.00	5.41	3.77	0.00	0.00	0.00	0.00	0.176690	0.663989
N	alternative_acceptor		chr16	+	chr16:85942780-85943089;chr16:85942780-85943092	chr16:85942780-85945175		chr16:85943090-85943092;chr16:85943093-85945175	chr16:85943092-85943093;chr16:85945175-85945176		89.66	78.95	81.58	NA	NA	50.00	98.11	100.00	100.00	97.60	98.20	98.89	98.67	100.00	99.30	98.26	98.08	98.93	NA	87.23	NA	91.23	90.48	91.82	NA	95.65	92.59	94.74	95.45	95.89	90.24	81.03	50.00	87.30	85.53	91.54	88.53	92.94	4.41	0.361522	0.709013
K	alternative_acceptor	MRPL28	chr16	-	chr16:419212-419930	chr16:419221-419930		chr16:419212-419220	chr16:419211-419212		94.00	100.00	91.30	95.45	91.49	90.32	92.68	92.11	94.00	97.44	100.00	100.00	92.45	100.00	94.03	100.00	98.21	100.00	87.18	97.06	94.55	100.00	93.94	94.12	100.00	90.70	91.11	95.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.34	95.53	-0.81	0.926684	0.978996
N	cassette	SIGLEC1	chr20	-	chr20:3668605-3670246;chr20:3669267-3670246	chr20:3669267-3669801,chr20:3668605-3669801;chr20:3669875-3670246		chr20:3669802-3669874			86.78	83.67	70.27	NA	75.00	96.97	89.50	84.89	78.82	87.65	86.58	85.11	90.48	79.70	81.96	92.31	88.81	89.90	100.00	89.03	84.44	90.91	65.12	84.00	84.21	81.31	76.24	82.72	81.58	86.73	87.16	78.12	100.00	86.36	76.92	82.01	89.99	85.84	-4.16	0.088735	0.652861
K	intron_retention	DGKA	chr12	+	chr12:56347195-56347468				chr12:56347194-56347195;chr12:56347468-56347469		0.00	5.71	7.14	0.00	4.29	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	3.45	2.38	3.33	10.00	4.76	NA	7.14	8.11	6.59	0.00	4.65	0.00	0.00	4.48	0.00	0.00	0.00	0.00	3.45	0.00	-3.45	0.329768	1.000000
K	intron_retention	IRF3	chr19	-	chr19:50165586-50165681				chr19:50165585-50165586;chr19:50165681-50165682		0.00	2.15	7.69	0.00	2.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.92	0.00	0.00	NA	2.99	0.00	0.00	NA	2.78	NA	8.11	0.00	5.80	NA	0.00	NA	5.26	6.38	0.00	18.18	2.86	NA	1.07	0.00	-1.07	0.890096	1.000000
N	alternative_acceptor	CCDC9	chr19	+	chr19:47770050-47773663	chr19:47770050-47773633		chr19:47773634-47773663	chr19:47773663-47773664		0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	5.88	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	alternative_acceptor	C18orf8	chr18	+	chr18:21110262-21110536;chr18:21110262-21110363;chr18:21110262-21110350	chr18:21110262-21110474		chr18:21110351-21110363;chr18:21110364-21110474;chr18:21110475-21110536	chr18:21110363-21110364;chr18:21110474-21110475;chr18:21110536-21110537		4.17	4.92	4.76	6.45	7.69	7.27	13.33	4.35	5.00	16.67	18.75	6.67	16.67	0.00	15.79	14.29	0.00	0.00	7.50	0.00	10.00	8.33	3.23	11.54	5.00	10.20	0.00	6.25	10.00	6.90	2.70	3.23	6.78	0.00	7.69	6.98	7.14	3.44	-3.71	0.055907	0.570243
K	intron_retention		chr16	-	chr16:4411471-4411985				chr16:4411470-4411471;chr16:4411985-4411986		6.00	9.30	4.00	0.00	0.00	NA	0.00	1.75	0.00	0.00	0.00	0.00	2.86	3.03	5.13	0.00	0.00	0.00	0.00	7.32	6.67	5.88	1.82	0.00	0.00	4.92	0.00	4.17	2.04	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	3.97	3.97	0.733571	1.000000
K	intron_retention	GMPPA	chr2	+	chr2:220370484-220370701				chr2:220370483-220370484;chr2:220370701-220370702		2.22	2.38	3.12	3.23	3.92	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	2.08	2.78	4.55	2.38	0.00	4.55	3.33	1.89	0.00	8.51	0.00	0.00	6.06	2.27	1.19	0.00	-1.19	0.926288	1.000000
N	alternative_acceptor	BIN2	chr12	-	chr12:51678572-51681891	chr12:51681817-51681891		chr12:51678572-51681816	chr12:51678571-51678572		5.51	3.23	10.91	0.00	3.17	NA	1.33	2.00	2.56	0.00	1.25	0.00	2.56	1.25	4.55	0.00	2.47	0.00	2.38	3.28	2.06	5.88	3.03	3.33	9.68	7.22	6.84	5.26	3.00	2.70	2.99	5.04	1.64	6.00	5.41	7.14	2.47	3.13	0.67	0.882545	0.960122
N	cassette	CUEDC1	chr17	-	chr17:55946555-55950023	chr17:55946555-55948646;chr17:55948731-55950023		chr17:55948647-55948730			100.00	100.00	95.45	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	93.55	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	COMMD1	chr2	+	chr2:62115720-62227835;chr2:62132994-62227835	chr2:62115978-62227835		chr2:62115720-62115977;chr2:62115978-62132993	chr2:62115719-62115720;chr2:62115977-62115978		0.00	6.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.183026	0.657607
K	intron_retention	DDX41	chr5	-	chr5:176942823-176942929				chr5:176942822-176942823;chr5:176942929-176942930		5.45	0.00	9.09	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	8.70	5.45	0.00	0.00	0.00	6.56	4.00	2.50	0.00	9.68	6.67	0.00	0.00	7.14	3.85	0.00	2.08	2.08	0.185264	1.000000
K	jcn_only_AD	ATG7	chr3	+	chr3:11350336-11350457;chr3:11350087-11350457	chr3:11348535-11350457		chr3:11348535-11350086;chr3:11350087-11350335	chr3:11348534-11348535;chr3:11350086-11350087		100.00	100.00	100.00	NA	NA	NA	93.69	100.00	100.00	96.67	100.00	100.00	94.25	96.88	100.00	100.00	98.08	100.00	NA	100.00	NA	100.00	100.00	93.33	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	97.12	100.00	2.88	0.250948	0.657607
K	intron_retention	TUBGCP2	chr10	-	chr10:135098718-135098959				chr10:135098717-135098718;chr10:135098959-135098960		10.20	18.00	17.46	7.69	12.50	NA	0.00	0.00	3.12	0.00	0.93	0.00	1.90	6.90	10.34	0.00	1.30	0.00	8.00	16.67	5.88	10.53	17.11	5.26	0.00	9.09	11.11	3.70	10.71	5.56	17.24	15.79	10.00	15.62	6.67	16.67	4.95	9.64	4.69	0.976378	1.000000
N	cassette	HSCB	chr22	+	chr22:29140693-29147228;chr22:29140698-29147228	chr22:29140693-29141851,chr22:29140698-29141851;chr22:29141997-29147228		chr22:29141852-29141996			96.30	77.78	84.62	NA	82.35	90.48	83.33	93.10	100.00	NA	90.91	93.33	92.31	96.55	93.02	100.00	NA	100.00	94.12	100.00	94.87	NA	NA	NA	100.00	97.30	95.24	NA	NA	92.31	100.00	100.00	100.00	80.00	NA	94.44	93.22	96.92	3.71	0.172800	0.709176
K	cassette	SUPT4H1	chr17	-	chr17:56424603-56428762	chr17:56424603-56424889;chr17:56424946-56428762		chr17:56424890-56424945			97.56	97.37	94.19	97.30	95.92	100.00	97.44	97.84	96.45	95.59	94.53	93.06	100.00	97.02	95.39	92.71	94.70	98.41	98.57	94.70	97.06	95.65	92.97	95.56	98.46	98.72	97.76	96.15	96.70	96.00	96.08	95.10	96.77	96.55	100.00	97.00	97.95	97.29	-0.66	0.168449	0.709176
N	coord_cassette	STAC3	chr12	-	chr12:57638749-57642488	chr12:57638749-57638927;chr12:57638995-57640586;chr12:57640685-57641908;chr12:57641982-57642488		chr12:57638928-57638994;chr12:57640587-57640684;chr12:57641909-57641981			100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	97.96	96.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	0.00	0.217911	0.643829
N	intron_retention		chr11	+	chr11:65348798-65351711				chr11:65348797-65348798;chr11:65351711-65351712		75.68	100.00	81.48	NA	NA	NA	53.33	70.37	76.00	69.23	50.00	NA	59.26	60.78	65.38	NA	60.00	NA	69.23	65.12	60.87	NA	61.11	NA	73.91	63.27	66.67	NA	63.64	NA	63.16	69.23	69.23	90.91	78.95	100.00	69.23	64.20	-5.03	0.989429	1.000000
K	cassette	PDCD6	chr5	+	chr5:271937-304291	chr5:271937-272825;chr5:272888-304291		chr5:272826-272887			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	95.83	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AA	CDK11A,RP1-283E3.8	chr1	-	chr1:1643840-1647784	chr1:1643867-1647784		chr1:1643840-1643866	chr1:1643839-1643840		0.00	0.00	1.02	0.00	5.00	NA	0.00	1.49	1.52	0.00	0.00	9.38	0.00	5.77	3.51	0.00	1.64	0.00	0.00	2.78	9.09	0.00	2.33	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	3.23	0.00	5.13	0.00	0.00	0.00	0.74	0.74	0.134779	0.663989
K	cassette	EEF1B2	chr2	+	chr2:207025435-207026069	chr2:207025435-207025610;chr2:207025857-207026069		chr2:207025611-207025856			2.13	0.47	1.79	0.34	0.40	0.34	0.00	0.00	1.05	0.24	0.45	0.00	0.19	0.00	0.00	0.28	0.38	0.00	0.40	5.00	0.78	1.27	0.71	1.02	0.39	0.00	1.03	0.67	0.75	0.34	5.41	3.80	0.66	0.91	0.57	0.25	0.40	1.06	0.67	0.156679	0.709176
K	intron_retention	STX4	chr16	+	chr16:31051140-31051232				chr16:31051139-31051140;chr16:31051232-31051233		2.63	0.66	2.34	1.36	1.13	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	0.00	1.04	1.65	1.13	0.93	0.91	1.83	1.14	0.70	0.91	0.41	0.30	0.35	5.05	1.79	3.30	1.24	0.67	1.28	0.85	1.17	0.32	0.818053	1.000000
K	cassette	TCF25	chr16	+	chr16:89973731-89976998	chr16:89973731-89975373;chr16:89975516-89976998		chr16:89975374-89975515			7.45	8.04	5.08	6.57	5.70	5.52	13.10	12.24	12.07	11.36	14.29	13.04	10.59	14.29	12.68	9.52	10.00	15.15	3.62	7.59	8.72	8.70	5.44	6.67	5.41	15.38	8.85	8.14	10.57	9.52	3.88	3.36	3.06	6.25	5.71	8.16	6.72	9.91	3.19	0.277033	0.709176
K	intron_retention	ABHD16A,XXbac-BPG32J3.20	chr6	-	chr6:31656564-31656791				chr6:31656563-31656564;chr6:31656791-31656792		1.52	0.00	3.92	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	4.69	0.00	0.00	0.00	0.00	0.00	2.02	1.33	6.67	1.75	3.70	0.00	2.17	2.08	2.56	3.12	0.00	0.00	0.76	0.76	0.500624	1.000000
K	intron_retention	RAD23A	chr19	+	chr19:13059628-13059894				chr19:13059627-13059628;chr19:13059894-13059895		5.26	3.06	6.80	4.08	4.23	0.00	0.00	0.00	0.00	0.76	0.84	0.00	1.37	0.00	0.80	0.00	1.40	0.00	2.13	5.00	3.03	8.96	4.31	8.16	4.35	4.05	5.56	4.23	4.44	3.92	4.26	7.14	5.56	5.81	3.09	5.21	2.59	4.15	1.56	0.833644	1.000000
N	jcn_only_AD		chr1	-	chr1:38463232-38463359	chr1:38463232-38463355		chr1:38463356-38463359	chr1:38463359-38463360		92.86	100.00	95.45	NA	100.00	NA	100.00	100.00	100.00	100.00	97.87	100.00	91.67	100.00	100.00	100.00	97.18	100.00	100.00	100.00	100.00	NA	96.88	92.31	NA	100.00	100.00	100.00	100.00	96.77	NA	93.75	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.916359	0.958435
N	coord_cassette	ACAP1	chr17	+	chr17:7251795-7253445	chr17:7251795-7252313;chr17:7252487-7253263;chr17:7253374-7253445		chr17:7252314-7252486;chr17:7253264-7253373			100.00	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	88.89	100.00	100.00	NA	NA	NA	88.89	96.67	100.00	NA	NA	NA	85.71	100.00	80.00	NA	NA	NA	88.89	100.00	11.11	0.167533	0.643829
K	intron_retention	WDR11	chr10	+	chr10:122666368-122668067				chr10:122666367-122666368;chr10:122668067-122668068		6.25	6.67	4.55	NA	3.23	NA	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	1.20	0.00	8.70	5.77	0.00	5.13	0.98	6.52	NA	0.00	4.35	8.00	4.00	9.09	0.00	3.64	5.26	5.00	6.25	6.25	5.26	0.00	-5.26	0.337118	1.000000
N	alternative_donor		chr15	-	chr15:41067795-41068265;chr15:41067795-41068387	chr15:41067795-41068393		chr15:41068266-41068387;chr15:41068388-41068393	chr15:41068387-41068388;chr15:41068393-41068394		100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	94.74	100.00	100.00	NA	100.00	NA	100.00	100.00	95.00	NA	100.00	90.48	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	92.86	100.00	100.00	85.00	96.97	100.00	100.00	100.00	100.00	100.00	0.00	0.512189	0.765216
K	alternative_first_exon	DALRD3,TUSC2	chr3	-	chr3:50363909-50365384	chr3:50363909-50364468	chr3:50365385-50365674	chr3:50364469-50364650			3.03	0.00	2.70	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	5.00	1.75	0.00	0.00	0.00	3.03	7.14	3.33	4.17	0.00	0.00	8.33	5.56	0.00	5.00	3.03	3.23	0.00	4.01	4.01	0.088443	0.251147
N	jcn_only_AA	LAMB2	chr3	-	chr3:49159288-49159376	chr3:49159294-49159376		chr3:49159288-49159293	chr3:49159287-49159288		84.62	87.39	92.86	92.31	89.83	92.00	95.83	NA	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	86.00	78.26	90.70	100.00	86.36	100.00	89.86	96.00	86.00	94.29	92.86	94.83	84.21	87.88	84.62	90.91	88.89	84.21	88.62	84.62	-4.00	0.737672	0.883015
N	cassette	GIT2	chr12	-	chr12:110386652-110390896;chr12:110377053-110390896;chr12:110385310-110390896	chr12:110385310-110388971,chr12:110386652-110388971,chr12:110377053-110388971;chr12:110389122-110390896		chr12:110388972-110389121			87.50	96.43	88.00	NA	100.00	NA	89.06	83.33	89.47	82.14	88.31	NA	93.51	90.24	89.19	86.67	86.59	NA	100.00	86.67	92.86	NA	93.94	NA	NA	87.10	93.33	78.57	100.00	NA	90.48	88.89	92.86	92.86	90.70	90.48	93.51	87.30	-6.21	0.016103	0.372211
K	alternative_first_exon	TNIP1	chr5	-	chr5:150443309-150472998;chr5:150443309-150460440;chr5:150443309-150444520	chr5:150443309-150466645	chr5:150460441-150460645;chr5:150444521-150444692	chr5:150466646-150466719			11.92	0.00	13.12	5.66	5.88	11.76	0.00	14.52	12.80	6.07	7.59	6.75	1.59	15.24	12.25	10.17	10.14	9.45	NA	16.49	10.81	10.74	8.42	8.11	0.00	15.61	15.13	14.81	9.68	10.39	17.54	13.93	0.00	6.90	12.44	11.03	0.00	15.43	15.43	0.000001	0.000248
N	jcn_only_AD	SEC11C	chr18	+	chr18:56822614-56822919;chr18:56819918-56822919	chr18:56819845-56822919		chr18:56819845-56819917;chr18:56819918-56822613	chr18:56819844-56819845;chr18:56819917-56819918		5.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	2.50	1.19	1.79	0.00	1.14	0.00	2.38	1.25	1.65	1.05	3.17	1.92	1.16	2.33	1.56	2.30	0.00	0.00	1.89	2.78	0.00	0.00	4.65	0.00	2.75	3.45	0.00	0.73	0.57	0.96	0.39	0.525502	0.754861
K	jcn_only_AA	ADAM8	chr10	-	chr10:135086935-135087265	chr10:135086948-135087265		chr10:135086935-135086947	chr10:135086934-135086935		97.56	100.00	94.20	NA	100.00	NA	96.00	100.00	97.14	93.22	100.00	100.00	100.00	98.53	100.00	100.00	95.61	89.71	NA	97.22	100.00	85.71	91.43	100.00	100.00	94.00	95.74	100.00	100.00	100.00	91.30	85.51	NA	96.43	93.75	95.92	100.00	97.39	-2.61	0.157775	0.663989
N	jcn_only_AA	CSNK1A1	chr5	-	chr5:148876424-148885045;chr5:148884547-148885045	chr5:148884299-148885045		chr5:148876424-148884298;chr5:148884299-148884546	chr5:148876423-148876424;chr5:148884298-148884299		0.00	0.00	3.33	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.84	5.88	0.00	5.13	0.00	13.33	0.00	4.65	NA	0.00	3.77	7.69	5.77	0.00	0.00	0.00	0.00	5.80	6.15	1.59	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	UROD	chr1	+	chr1:45479743-45480110				chr1:45479742-45479743;chr1:45480110-45480111		19.44	14.41	14.55	11.90	9.21	4.55	0.00	0.00	0.00	3.33	0.00	0.00	3.70	4.17	6.00	3.17	5.13	0.00	5.21	10.34	6.41	17.24	13.43	12.50	1.43	16.13	10.00	8.70	13.24	8.33	20.59	22.73	6.19	13.11	14.47	9.09	4.46	13.23	8.78	0.394619	1.000000
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4094497-4095385;chr19:4095045-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094556-4095385	chr19:4094967-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		7.48	11.90	17.80	16.09	15.95	14.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.44	8.75	11.73	17.14	34.45	16.67	14.56	12.50	17.27	7.32	7.14	10.29	19.63	17.11	12.99	7.84	9.09	12.87	12.17	8.12	-4.05	0.889685	0.961426
K	alternative_donor	BUD31	chr7	+	chr7:99006628-99007656	chr7:99006869-99007656		chr7:99006628-99006868	chr7:99006627-99006628		16.88	22.95	22.37	8.11	19.61	11.11	19.57	18.18	29.63	22.64	17.31	23.08	21.05	23.53	35.42	11.94	19.64	21.95	14.00	18.87	24.07	13.51	15.87	13.95	30.00	22.89	24.62	18.42	21.15	15.91	16.42	24.14	20.83	16.28	21.74	20.41	20.94	18.52	-2.41	0.452765	0.712277
N	alternative_acceptor	ITGB1BP1	chr2	-	chr2:9548331-9552397	chr2:9548335-9552397		chr2:9548331-9548334	chr2:9548330-9548331		100.00	100.00	91.67	100.00	87.50	NA	93.62	100.00	100.00	96.00	95.83	90.32	95.83	100.00	NA	100.00	100.00	100.00	100.00	87.50	92.59	92.00	96.67	100.00	NA	100.00	NA	100.00	100.00	100.00	86.67	87.50	88.00	93.33	96.55	87.50	95.83	100.00	4.17	0.954938	0.990505
K	intron_retention	ADRBK1	chr11	+	chr11:67049837-67049905				chr11:67049836-67049837;chr11:67049905-67049906		4.81	5.98	6.00	NA	0.00	NA	0.00	0.00	0.00	0.00	2.15	0.00	0.61	0.00	0.96	0.00	1.00	NA	4.76	3.12	2.70	0.00	8.06	0.00	4.35	4.26	2.16	NA	6.90	NA	7.41	7.14	5.71	0.00	6.33	2.70	4.55	3.69	-0.86	0.897397	1.000000
N	cassette	RNPEPL1	chr2	+	chr2:241512679-241513931;chr2:241512679-241513529	chr2:241512679-241513191;chr2:241513309-241513529,chr2:241513309-241513931		chr2:241513192-241513308			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	NA	NA	100.00	NA	100.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	NA	100.00	93.55	95.24	100.00	100.00	0.00	0.363217	0.709176
K	cassette	RPAIN	chr17	+	chr17:5326150-5335861;chr17:5326150-5329555;chr17:5326150-5331390	chr17:5326150-5329290;chr17:5329403-5335861,chr17:5329403-5329555,chr17:5329403-5331390		chr17:5329291-5329402			35.29	65.62	41.03	50.00	54.84	50.00	64.29	NA	66.67	45.45	66.67	NA	62.50	50.00	41.94	75.00	60.00	NA	41.67	53.33	53.12	50.00	54.84	70.00	28.57	40.00	50.00	57.14	52.17	50.00	33.33	51.06	40.00	54.55	53.85	52.38	52.09	40.00	-12.09	0.316419	0.709176
N	jcn_only_AD	PHC2	chr1	-	chr1:33790621-33791395;chr1:33790621-33794470	chr1:33790621-33792948					5.29	0.00	7.79	0.00	4.49	NA	0.00	6.17	5.10	6.02	2.60	12.00	2.63	4.12	3.03	5.80	5.17	0.00	0.00	4.40	5.88	0.00	5.29	8.70	NA	3.95	6.99	0.00	5.26	0.00	2.99	2.94	0.00	0.00	7.96	2.22	0.00	4.26	4.26	0.000373	0.060704
K	intron_retention	COASY	chr17	+	chr17:40716917-40717000				chr17:40716916-40716917;chr17:40717000-40717001		5.13	4.88	11.43	6.67	2.94	11.54	0.00	2.13	0.00	0.00	2.00	1.79	0.00	0.00	4.17	0.00	0.00	0.00	6.06	13.79	2.22	14.29	5.88	9.52	0.00	6.38	6.82	4.35	10.53	6.25	8.82	11.11	5.88	16.67	5.26	11.76	2.44	5.75	3.31	0.421774	1.000000
K	alternative_acceptor	NPL	chr1	+	chr1:182794956-182798737	chr1:182794956-182797858		chr1:182797859-182798737	chr1:182798737-182798738		89.12	95.86	94.19	91.09	90.23	88.89	97.90	97.56	96.39	94.53	94.39	96.22	97.93	96.33	100.00	95.65	96.26	97.79	92.76	89.50	91.00	90.45	94.25	94.21	98.97	93.10	95.38	96.30	95.96	90.15	84.36	89.73	92.09	90.56	93.07	91.56	96.88	91.30	-5.58	0.106840	0.598353
K	intron_retention	FBXW5	chr9	-	chr9:139837148-139837220				chr9:139837147-139837148;chr9:139837220-139837221		19.40	7.14	13.75	18.75	11.54	NA	1.69	1.94	4.55	7.14	6.10	5.56	1.69	7.29	9.70	5.95	6.98	0.00	15.38	25.93	12.50	19.44	25.86	22.86	17.65	10.53	16.47	12.82	9.43	14.29	20.00	26.74	25.00	12.73	16.36	14.29	11.26	14.96	3.71	0.966027	1.000000
K	intron_retention	EDC4	chr16	+	chr16:67917081-67917470				chr16:67917080-67917081;chr16:67917470-67917471		7.50	0.00	6.45	0.00	2.80	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.12	5.80	3.23	0.00	6.67	7.89	0.00	4.55	2.94	1.72	2.70	2.86	3.90	1.22	0.00	4.08	4.00	0.00	1.43	1.43	0.924294	1.000000
K	intron_retention	GALM	chr2	+	chr2:38956840-38958876				chr2:38956839-38956840;chr2:38958876-38958877		3.60	0.00	0.00	NA	0.00	NA	0.71	1.09	1.89	2.04	1.35	0.00	2.73	0.00	0.00	2.13	1.65	1.89	NA	4.11	0.00	NA	0.00	NA	NA	0.80	0.00	NA	4.35	0.00	0.00	0.00	0.00	5.00	2.27	0.00	0.35	0.95	0.59	0.863579	1.000000
N	alternative_first_exon	C19orf24	chr19	+	chr19:1272051-1277181,chr19:1274440-1277181;chr19:1276103-1277181	chr19:1275830-1277181	chr19:1271980-1272050;chr19:1276020-1276102	chr19:1275437-1275829			86.67	89.53	78.26	57.14	62.16	55.56	88.33	92.86	80.95	90.00	87.23	94.12	86.54	NA	77.27	82.86	91.11	92.31	81.36	81.82	71.70	63.64	77.14	NA	72.22	63.64	60.00	81.82	76.00	NA	70.59	57.69	73.75	81.25	72.00	94.74	83.95	81.82	-2.13	0.658660	0.759153
K	intron_retention	MECP2	chrX	-	chrX:153296738-153296846				chrX:153296737-153296738;chrX:153296846-153296847		87.10	100.00	100.00	88.89	90.00	92.59	95.00	87.18	88.57	93.75	93.55	90.00	100.00	90.62	82.93	94.29	91.30	89.19	NA	85.71	90.00	81.82	86.36	87.50	100.00	88.10	89.29	69.57	84.21	88.24	85.37	90.91	84.62	93.94	91.30	88.68	100.00	87.14	-12.86	0.002258	0.920759
K	jcn_only_AD	TXNDC17	chr17	+	chr17:6544473-6545072;chr17:6544548-6545072	chr17:6544421-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		1.01	5.58	0.92	5.41	2.16	2.06	1.18	0.00	1.18	2.70	1.61	0.00	3.39	1.92	0.00	0.00	3.57	0.00	3.81	0.00	2.04	3.39	1.59	2.44	1.85	1.69	2.59	0.00	0.83	0.00	0.00	0.00	4.44	1.64	1.02	3.90	3.60	0.51	-3.10	0.009427	0.237005
K	alternative_acceptor	DESI1	chr22	-	chr22:41997195-41999262	chr22:41998788-41999262		chr22:41997195-41998787	chr22:41997194-41997195		5.56	2.27	7.69	2.53	1.79	2.11	3.12	5.56	4.94	8.63	7.95	6.12	1.22	3.87	2.54	5.38	5.15	5.21	0.00	3.66	0.83	4.29	4.65	6.41	9.09	3.82	2.74	2.94	3.45	2.47	3.30	3.74	0.00	6.31	4.11	7.86	1.75	3.84	2.10	0.291564	0.709013
N	cassette	DNAJC1	chr10	-	chr10:22055239-22171210	chr10:22055239-22094908;chr10:22095029-22171210		chr10:22094909-22095028			100.00	100.00	95.12	100.00	95.00	100.00	100.00	97.06	100.00	100.00	95.45	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	100.00	100.00	100.00	100.00	97.14	98.51	100.00	100.00	100.00	100.00	100.00	97.55	-2.45	0.028029	0.421674
N	alternative_donor	MS4A6A	chr11	-	chr11:59940603-59942874;chr11:59940603-59943036	chr11:59940603-59942978		chr11:59942875-59942978;chr11:59942979-59943036	chr11:59942978-59942979;chr11:59943036-59943037		7.78	9.00	13.64	4.60	5.82	5.44	2.34	4.90	NA	2.27	4.30	2.10	4.09	6.25	NA	6.74	5.21	2.78	8.82	8.11	0.00	7.04	7.01	5.77	4.40	8.33	5.00	7.50	5.53	6.54	NA	17.65	9.04	7.92	7.22	8.12	6.61	7.78	1.17	0.585966	0.799662
K	cassette	FEZ2	chr2	-	chr2:36782892-36785580	chr2:36782892-36783119;chr2:36783204-36785580		chr2:36783120-36783203			0.00	0.00	0.00	NA	0.00	NA	2.27	2.22	3.57	2.22	0.00	2.33	1.61	2.22	0.00	0.00	0.00	0.00	0.00	2.50	7.69	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	8.33	2.44	0.00	0.00	0.00	0.00	0.00	2.22	2.22	0.231175	0.709176
K	alternative_donor	HSPE1,HSPE1-MOB4	chr2	+	chr2:198365164-198365797	chr2:198365643-198365797		chr2:198365164-198365642	chr2:198365163-198365164		6.25	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.00	0.98	0.80	1.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.447040	0.706673
N	jcn_only_AD	P3H1	chr1	-	chr1:43212524-43212741;chr1:43212524-43212942	chr1:43212524-43212923		chr1:43212742-43212923;chr1:43212924-43212942	chr1:43212923-43212924;chr1:43212942-43212943		8.33	7.46	16.67	0.00	8.82	7.14	11.76	NA	35.29	25.00	20.00	NA	14.29	NA	26.32	16.67	16.67	NA	19.44	6.67	15.38	NA	16.67	NA	16.67	23.08	16.67	NA	12.50	9.09	4.76	0.00	8.47	0.00	8.70	11.76	13.02	7.50	-5.52	0.641213	0.818639
N	alternative_first_exon	FAM209A	chr20	+	chr20:55093354-55100859	chr20:55100114-55100859	chr20:55093143-55093353	chr20:55099542-55100113			10.34	33.33	12.12	0.00	2.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	5.88	3.57	0.00	5.00	0.00	20.00	4.17	14.71	0.00	2.78	0.00	2.63	13.16	8.70	6.67	6.06	7.14	9.11	3.40	-5.71	0.191075	0.394686
N	jcn_only_AA	BET1L	chr11	-	chr11:206061-207302;chr11:206039-207302	chr11:206044-207302		chr11:206039-206043;chr11:206044-206060	chr11:206038-206039;chr11:206043-206044		100.00	100.00	100.00	NA	100.00	100.00	94.12	100.00	100.00	94.44	89.58	91.67	100.00	95.83	100.00	88.24	100.00	94.12	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.817791	0.926775
K	intron_retention		chr4	+	chr4:25417163-25418046				chr4:25417162-25417163;chr4:25418046-25418047		0.00	0.00	8.57	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	4.00	0.00	0.00	2.22	NA	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.57	8.82	5.88	0.00	2.00	2.00	0.896040	1.000000
K	intron_retention	ANKRD13D	chr11	+	chr11:67057022-67057548				chr11:67057021-67057022;chr11:67057548-67057549		4.76	26.32	5.26	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	5.56	NA	26.32	NA	9.68	NA	NA	NA	NA	0.00	5.26	NA	0.00	NA	5.26	0.00	-5.26	0.497892	1.000000
N	cassette	STK40	chr1	-	chr1:36826942-36851323;chr1:36828258-36851323;chr1:36826942-36851754	chr1:36828258-36833448,chr1:36826942-36833448;chr1:36833686-36851754,chr1:36833686-36851323		chr1:36833449-36833685			17.24	5.26	22.22	NA	NA	NA	8.75	9.82	18.00	26.35	15.48	28.91	12.90	16.24	21.05	26.32	14.10	26.11	NA	10.34	NA	29.03	18.42	32.31	7.14	11.11	16.00	27.78	22.22	27.78	23.53	7.14	NA	25.49	16.25	27.59	7.95	13.67	5.73	0.052123	0.578861
K	intron_retention	NFKBID	chr19	-	chr19:36387734-36387814				chr19:36387733-36387734;chr19:36387814-36387815		13.73	13.89	15.22	0.00	9.72	NA	NA	NA	NA	0.00	4.76	0.00	9.09	0.00	14.29	0.00	3.64	0.00	10.00	15.15	0.00	9.68	12.61	0.00	17.65	13.33	15.00	0.00	15.00	NA	11.11	9.76	0.00	7.50	9.90	2.38	10.00	13.33	3.33	0.830424	1.000000
K	alternative_donor	CDC27,SDF2	chr17	-	chr17:26982502-26989063	chr17:26982502-26988743		chr17:26988744-26989063	chr17:26989063-26989064		86.67	80.43	81.25	61.54	73.33	53.33	61.70	77.78	69.35	44.00	44.07	38.89	62.75	75.00	70.37	46.55	42.00	33.33	85.71	86.76	82.35	58.70	70.27	60.53	NA	85.51	85.92	71.05	66.67	58.82	94.52	91.95	86.21	70.83	73.58	79.63	80.43	86.09	5.66	0.193076	0.570088
N	intron_retention		chr20	-	chr20:3669267-3670246				chr20:3669266-3669267;chr20:3670246-3670247		70.67	73.33	54.17	NA	NA	90.00	31.03	29.11	27.59	25.00	31.03	13.04	42.86	19.79	35.64	NA	27.27	23.08	NA	65.91	NA	NA	42.31	54.55	73.91	48.15	54.90	56.25	46.15	52.46	59.38	40.00	NA	72.73	60.00	57.89	58.09	53.77	-4.33	0.893913	1.000000
N	coord_cassette	SDSL	chr12	+	chr12:113860283-113871938	chr12:113860283-113865766;chr12:113865962-113866224;chr12:113866265-113871938		chr12:113865767-113865961;chr12:113866225-113866264			91.67	100.00	100.00	NA	100.00	NA	100.00	93.62	100.00	95.24	100.00	93.33	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	95.16	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.179345	0.643829
K	cassette	PARVB	chr22	+	chr22:44543803-44553861	chr22:44543803-44547362;chr22:44547432-44553861		chr22:44547363-44547431			88.00	96.38	91.43	94.29	96.15	92.31	98.89	NA	96.43	100.00	97.59	95.24	100.00	NA	95.24	99.08	98.44	100.00	97.71	95.00	96.97	96.49	98.90	98.44	93.85	100.00	94.23	100.00	100.00	100.00	93.75	95.24	94.17	98.53	97.50	96.05	97.04	94.38	-2.67	0.376891	0.709410
N	alternative_acceptor	RASSF4	chr10	+	chr10:45485170-45486395	chr10:45485170-45485464		chr10:45485465-45486395	chr10:45486395-45486396		1.86	1.89	3.44	0.00	0.00	0.00	0.00	1.08	0.99	1.06	1.16	2.48	1.43	1.20	1.74	0.90	0.00	2.99	0.00	1.71	0.72	2.70	2.78	5.88	0.00	1.94	2.38	3.00	2.13	1.33	0.00	1.00	0.00	0.00	1.43	2.08	0.00	1.46	1.46	0.139327	0.637175
K	intron_retention	LONP1	chr19	-	chr19:5696383-5696680				chr19:5696382-5696383;chr19:5696680-5696681		10.53	3.77	0.00	0.00	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	0.00	4.65	2.86	6.67	8.33	0.00	7.81	1.82	4.76	0.00	5.26	2.50	1.43	1.89	0.00	4.00	0.71	0.00	-0.71	0.807240	1.000000
N	alternative_donor	CD163	chr12	-	chr12:7649730-7649865;chr12:7649730-7651463	chr12:7649730-7651410		chr12:7649866-7651410;chr12:7651411-7651463	chr12:7651410-7651411;chr12:7651463-7651464		1.08	6.76	0.65	20.69	10.78	31.58	0.37	1.61	0.72	0.82	0.68	0.65	0.45	2.03	0.76	1.69	0.76	0.81	22.22	1.56	8.40	0.82	1.62	0.70	7.44	1.72	0.28	1.96	1.94	3.85	3.39	1.42	12.12	0.88	0.65	1.23	7.10	1.67	-5.43	0.117456	0.529698
N	alternative_acceptor	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668273;chr17:79668162-79668567;chr17:79668162-79668537	chr17:79668162-79668244		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		1.96	4.35	3.08	1.67	1.35	7.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	1.96	1.25	3.45	1.43	1.89	3.12	2.33	1.72	0.00	0.00	1.47	1.39	3.57	1.56	1.56	1.82	3.33	1.97	1.67	-0.30	0.467296	0.769369
K	alternative_first_exon	TMEM219	chr16	+	chr16:29973554-29974430;chr16:29952339-29974430	chr16:29973454-29974430	chr16:29952206-29952338	chr16:29973351-29973453			100.00	100.00	100.00	NA	100.00	NA	93.33	88.24	87.50	100.00	100.00	94.74	100.00	92.86	87.50	100.00	100.00	92.31	100.00	100.00	100.00	NA	100.00	NA	NA	85.71	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	-3.57	0.197837	0.403225
K	alternative_acceptor	RPL3	chr22	-	chr22:39712847-39713465	chr22:39713027-39713465		chr22:39712847-39713026	chr22:39712846-39712847		12.50	1.15	7.24	2.82	1.85	1.68	0.24	3.80	4.90	0.71	0.28	0.00	0.35	2.78	3.67	0.96	0.58	0.22	2.40	15.58	3.81	3.89	2.10	3.74	2.82	18.37	8.66	1.50	1.27	2.07	30.99	21.80	4.76	3.24	2.09	2.83	1.77	14.04	12.26	0.036010	0.560254
N	alternative_acceptor	TAOK2	chr16	+	chr16:29994223-29994392;chr16:29994223-29994371	chr16:29994223-29994374		chr16:29994372-29994374;chr16:29994375-29994392	chr16:29994374-29994375;chr16:29994392-29994393		0.00	0.00	3.33	NA	NA	NA	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	1.89	0.00	NA	0.00	NA	NA	0.00	NA	0.00	5.26	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	3.85	0.00	0.00	0.00	0.363217	0.709013
K	jcn_only_AD	MRPL33	chr2	+	chr2:27994667-27995540	chr2:27995253-27995540		chr2:27994667-27995252	chr2:27994666-27994667		1.79	0.00	5.13	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.74	0.00	5.71	0.00	0.88	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.37	2.41	0.00	1.54	0.00	0.00	0.00	0.00	0.493596	0.737876
K	cassette	C6orf48	chr6	+	chr6:31803229-31805012	chr6:31803229-31804200;chr6:31804295-31805012		chr6:31804201-31804294			15.79	16.84	27.08	18.75	12.36	15.00	14.58	25.00	31.63	10.64	12.50	13.64	13.59	21.74	37.72	13.92	11.94	13.33	13.64	38.46	28.57	13.89	10.94	13.64	6.06	35.29	26.39	14.63	14.89	19.44	33.33	36.51	15.52	13.64	10.91	10.91	14.11	29.16	15.05	0.007056	0.267181
N	cassette	EFTUD2	chr17	-	chr17:42929931-42930884;chr17:42929186-42930884	chr17:42929186-42930663,chr17:42929931-42930663;chr17:42930759-42930884		chr17:42930664-42930758			90.62	83.33	93.62	93.33	89.74	NA	100.00	100.00	100.00	91.30	96.67	100.00	100.00	100.00	91.43	100.00	98.57	100.00	100.00	90.00	95.00	94.74	95.35	87.50	72.73	100.00	95.65	92.00	90.48	100.00	100.00	94.44	96.55	86.21	90.00	93.10	98.28	100.00	1.72	0.392359	0.709492
K	jcn_only_AA	NELFE	chr6	-	chr6:31922580-31922835;chr6:31922670-31922835	chr6:31922655-31922835		chr6:31922580-31922654;chr6:31922655-31922669	chr6:31922579-31922580;chr6:31922654-31922655		17.14	17.19	13.51	20.69	10.61	19.35	8.51	30.00	30.30	10.00	18.75	17.39	18.75	18.18	19.35	18.33	19.23	25.00	11.76	13.33	17.19	30.00	11.48	13.51	13.33	16.22	13.04	12.82	14.81	9.68	20.00	14.29	9.09	9.52	14.00	14.58	12.54	17.66	5.12	0.067077	0.663989
N	cassette	C19orf60	chr19	+	chr19:18699888-18701663;chr19:18699888-18702917	chr19:18699888-18700288;chr19:18700494-18702917,chr19:18700494-18701663		chr19:18700289-18700493			88.89	89.51	96.77	94.20	90.97	89.16	92.71	100.00	100.00	90.91	93.75	91.67	95.92	94.44	96.97	95.24	95.18	92.31	91.07	88.00	91.18	96.15	92.20	90.62	91.77	95.65	96.36	91.11	95.31	94.74	90.91	92.50	84.68	88.64	88.89	84.29	91.42	92.67	1.26	0.418187	0.728056
K	alternative_last_exon	OPN3	chr1	-	chr1:241755423-241761047	chr1:241757994-241761047	chr1:241755312-241755422	chr1:241756426-241757993			85.71	88.33	86.21	43.96	73.02	22.09	94.12	77.78	91.18	67.42	88.68	62.50	95.35	58.33	90.00	74.16	80.33	63.51	85.42	76.36	75.68	67.14	85.29	61.90	82.14	77.50	87.50	58.82	85.42	37.66	64.44	80.00	83.78	64.84	79.28	54.65	86.88	76.93	-9.94	0.013611	0.175757
N	alternative_acceptor	GMFG	chr19	-	chr19:39826144-39826613;chr19:39826195-39826613	chr19:39826172-39826613		chr19:39826144-39826171;chr19:39826172-39826194	chr19:39826143-39826144;chr19:39826171-39826172		97.87	94.21	96.43	100.00	99.07	100.00	99.00	100.00	100.00	100.00	98.11	100.00	99.07	100.00	100.00	100.00	98.98	100.00	99.03	97.67	98.77	100.00	100.00	98.04	95.15	97.14	97.67	100.00	98.23	100.00	100.00	96.97	98.82	100.00	100.00	100.00	98.91	98.94	0.03	0.281423	0.709013
N	cassette	AHNAK	chr11	-	chr11:62201364-62284481;chr11:62201364-62302474	chr11:62201364-62259203;chr11:62259304-62302474,chr11:62259304-62284481		chr11:62259204-62259303			89.29	87.50	NA	91.30	92.97	92.42	NA	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	92.31	93.33	NA	100.00	95.52	100.00	83.33	89.47	NA	100.00	95.45	91.67	86.36	NA	92.19	97.83	93.44	95.52	92.19	89.38	-2.81	0.659271	0.874582
K	jcn_only_AA	FAM65A	chr16	+	chr16:67577168-67577253	chr16:67577168-67577250		chr16:67577251-67577253	chr16:67577253-67577254		92.68	93.33	88.52	NA	88.64	NA	92.45	97.22	87.50	92.31	95.24	100.00	96.30	92.68	88.37	90.32	92.31	90.91	86.36	87.23	90.91	92.00	88.24	82.61	100.00	91.07	86.96	100.00	93.18	NA	92.86	100.00	91.30	90.70	90.16	93.62	92.89	92.68	-0.21	0.674127	0.854354
K	intron_retention	ARHGEF1	chr19	+	chr19:42402263-42402590				chr19:42402262-42402263;chr19:42402590-42402591		80.00	81.25	72.41	NA	69.23	NA	12.50	23.08	NA	0.00	11.11	NA	28.95	33.33	44.44	14.29	19.05	NA	NA	63.64	NA	NA	57.14	50.00	80.00	71.43	70.59	58.33	46.15	NA	NA	68.00	63.64	64.71	60.00	64.29	63.64	63.64	0.00	0.994378	1.000000
N	alternative_acceptor	PNPLA6	chr19	+	chr19:7621611-7622053	chr19:7621611-7621851		chr19:7621852-7622053	chr19:7622053-7622054		4.08	2.30	3.70	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68	1.92	0.00	1.12	0.00	1.72	2.63	0.95	0.00	2.04	0.00	1.37	2.30	3.01	0.00	2.78	4.35	1.75	2.02	0.00	0.00	5.41	0.00	0.69	2.02	1.34	0.120812	0.606219
K	cassette	SRRM2	chr16	+	chr16:2818263-2818997	chr16:2818263-2818505;chr16:2818601-2818997		chr16:2818506-2818600			1.27	0.00	1.49	0.00	1.45	0.00	0.00	3.12	1.56	1.52	1.28	0.00	1.52	0.00	2.50	3.33	1.37	0.00	0.00	1.54	1.75	3.28	1.72	1.75	0.00	3.64	2.00	5.13	3.03	1.69	0.00	1.00	0.00	2.47	2.13	1.69	0.00	1.41	1.41	0.089298	0.652861
N	alternative_donor	MICAL1	chr6	-	chr6:109774571-109774840	chr6:109774571-109774809		chr6:109774810-109774840	chr6:109774840-109774841		NA	16.67	8.70	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	16.67	3.70	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	8.34	0.00	-8.34	0.212617	0.584014
K	intron_retention		chr17	+	chr17:76167731-76167819				chr17:76167730-76167731;chr17:76167819-76167820		3.68	4.57	2.01	0.00	1.60	0.00	0.00	0.35	0.23	0.32	0.20	0.00	0.00	0.23	0.49	0.36	0.18	0.00	3.70	3.23	2.72	1.98	2.05	2.46	5.00	0.90	1.84	0.00	2.04	2.56	5.26	3.56	6.85	1.54	2.05	1.58	4.13	2.06	-2.07	0.881699	1.000000
N	alternative_acceptor	TMEM128	chr4	-	chr4:4237978-4239553;chr4:4238805-4239553	chr4:4237984-4239553		chr4:4237978-4237983;chr4:4237984-4238804	chr4:4237977-4237978;chr4:4237983-4237984		85.00	80.00	78.72	NA	88.24	NA	93.33	90.00	92.31	90.91	82.35	NA	73.68	66.67	79.41	61.54	69.23	NA	NA	86.96	92.86	85.71	87.10	80.00	NA	87.50	86.67	NA	75.00	84.62	92.00	87.50	90.00	68.18	74.07	70.83	85.00	87.23	2.23	0.942973	0.984632
K	intron_retention	MYO1F	chr19	-	chr19:8613007-8613120				chr19:8613006-8613007;chr19:8613120-8613121		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	1.12	0.00	1.47	0.00	9.09	1.82	0.00	0.00	0.00	0.00	0.00	0.568465	1.000000
N	intron_retention		chr12	+	chr12:56229822-56229909				chr12:56229821-56229822;chr12:56229909-56229910		100.00	75.86	100.00	97.14	93.33	95.45	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	86.00	100.00	100.00	100.00	97.62	100.00	87.04	100.00	92.31	100.00	100.00	97.14	100.00	93.10	86.67	100.00	100.00	94.59	86.34	100.00	13.66	0.019836	1.000000
N	alternative_acceptor	NFE2L2	chr2	-	chr2:178092682-178097119;chr2:178096759-178097119	chr2:178096737-178097119		chr2:178092682-178096736;chr2:178096737-178096758	chr2:178092681-178092682;chr2:178096736-178096737		99.45	90.80	97.26	94.69	97.30	75.96	98.15	99.30	98.43	97.97	97.91	98.44	96.97	97.62	98.10	96.88	98.45	98.05	80.95	99.54	96.36	98.19	97.18	97.78	NA	99.47	97.95	99.39	99.21	99.60	99.40	95.68	80.65	97.09	98.46	97.58	90.80	99.43	8.63	0.062697	0.580713
K	intron_retention	STARD10	chr11	-	chr11:72466799-72468811				chr11:72466798-72466799;chr11:72468811-72468812		0.00	2.63	2.27	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.88	0.00	0.00	0.00	1.31	0.00	-1.31	0.501987	1.000000
N	jcn_only_AD	MLEC	chr12	+	chr12:121125512-121131893;chr12:121130932-121131893	chr12:121125335-121131893		chr12:121125335-121125511;chr12:121125512-121130931	chr12:121125334-121125335;chr12:121125511-121125512		100.00	100.00	100.00	NA	100.00	NA	94.44	100.00	100.00	100.00	93.62	100.00	95.29	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	92.31	100.00	100.00	100.00	0.00	0.176510	0.657607
K	intron_retention		chr2	-	chr2:96943454-96943544				chr2:96943453-96943454;chr2:96943544-96943545		1.52	3.19	1.35	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.69	0.00	2.00	3.23	6.25	5.48	2.86	0.00	1.79	1.72	0.00	0.00	0.00	0.919120	1.000000
K	alternative_acceptor	STAT3	chr17	-	chr17:40468870-40469199	chr17:40468920-40469199		chr17:40468870-40468919	chr17:40468869-40468870		83.18	79.17	79.22	81.82	80.00	69.27	72.73	84.68	82.45	84.30	89.74	89.44	84.21	80.00	83.33	79.10	86.54	86.72	79.17	86.21	70.51	78.57	82.35	86.17	66.67	77.23	78.64	75.56	70.97	80.92	76.34	76.98	61.54	76.54	75.61	77.63	75.95	81.59	5.64	0.098568	0.598353
N	cassette	AP3B1	chr5	-	chr5:77298880-77316515	chr5:77298880-77311233;chr5:77311373-77316515		chr5:77311234-77311372			97.73	100.00	94.83	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	0.00	0.363217	0.709176
K	coord_cassette	RPS3A	chr4	+	chr4:152020867-152024022	chr4:152020867-152021636;chr4:152021741-152022126;chr4:152022165-152024022		chr4:152021637-152021740;chr4:152022127-152022164			98.37	97.91	95.86	98.68	98.91	98.71	99.34	98.51	95.33	99.55	99.65	99.50	99.19	95.08	95.87	99.28	99.38	99.69	98.46	98.06	97.24	99.42	98.95	99.15	99.06	94.67	96.27	99.04	99.12	99.21	96.09	94.48	97.95	99.31	99.07	98.96	98.76	97.08	-1.68	0.046767	0.643829
N	jcn_only_AA	AC002398.9,PSENEN	chr19	+	chr19:41086563-41086662	chr19:41086563-41086651		chr19:41086652-41086662	chr19:41086662-41086663		100.00	100.00	98.91	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	94.90	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	ASCC2	chr22	-	chr22:30198128-30200626;chr22:30198123-30200626;chr22:30198198-30200626	chr22:30198231-30200626		chr22:30198123-30198127;chr22:30198128-30198197;chr22:30198198-30198230	chr22:30198122-30198123;chr22:30198127-30198128;chr22:30198197-30198198		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	RASSF4	chr10	+	chr10:45478112-45479469				chr10:45478111-45478112;chr10:45479469-45479470		23.00	8.70	19.57	NA	NA	NA	10.53	15.45	12.64	9.38	5.56	9.00	8.21	15.48	13.52	12.37	6.85	13.56	NA	21.25	16.67	13.64	17.65	22.45	0.00	16.53	20.77	14.52	12.00	13.73	7.69	16.67	NA	13.89	13.85	15.20	8.46	16.01	7.55	0.093051	1.000000
N	jcn_only_AD		chr10	-	chr10:91007407-91011461;chr10:91007407-91011463;chr10:91007407-91010954;chr10:91007407-91011213;chr10:91007407-91020202;chr10:91007407-91009753;chr10:91007407-91010941;chr10:91007407-91010367	chr10:91007407-91011493		chr10:91009754-91010367;chr10:91010368-91010941;chr10:91010942-91010954;chr10:91010955-91011213;chr10:91011214-91011461;chr10:91011462-91011463;chr10:91011464-91011493;chr10:91011494-91020202	chr10:91010367-91010368;chr10:91010941-91010942;chr10:91010954-91010955;chr10:91011213-91011214;chr10:91011461-91011462;chr10:91011463-91011464;chr10:91011493-91011494;chr10:91020202-91020203		100.00	100.00	94.12	NA	100.00	NA	91.04	89.91	87.58	86.58	87.75	86.89	97.14	97.97	100.00	96.94	96.24	96.06	100.00	98.08	86.67	97.87	97.12	97.81	80.00	91.13	84.85	91.62	93.87	100.00	100.00	86.44	85.00	93.01	92.20	93.39	94.09	98.03	3.94	0.334316	0.657607
N	alternative_acceptor	SMCO4	chr11	-	chr11:93212436-93232441;chr11:93212670-93232441;chr11:93214715-93232441	chr11:93212451-93232441		chr11:93212436-93212450;chr11:93212451-93212669;chr11:93212670-93214714	chr11:93212435-93212436;chr11:93212450-93212451;chr11:93212669-93212670		5.56	0.00	4.17	10.34	10.00	12.96	9.09	9.78	7.69	9.86	6.25	13.27	6.90	8.75	13.21	16.33	5.88	12.90	4.55	5.56	9.80	10.42	8.70	9.57	0.00	12.20	6.67	15.79	17.24	21.88	5.26	5.26	0.00	3.23	6.12	8.04	2.27	7.15	4.88	0.055054	0.570243
K	jcn_only_AA	GMIP	chr19	-	chr19:19747597-19747725	chr19:19747606-19747725		chr19:19747597-19747605	chr19:19747596-19747597		72.92	81.25	76.47	NA	NA	NA	80.00	78.77	79.37	75.00	83.78	78.57	84.16	80.27	74.60	80.00	81.40	83.33	NA	74.36	87.50	93.75	74.36	80.00	72.73	68.75	74.42	79.17	86.96	90.00	57.69	65.00	70.00	71.05	73.17	79.31	80.00	73.64	-6.36	0.231789	0.663989
N	alternative_donor	PI4KA	chr22	-	chr22:21064286-21064889;chr22:21064286-21064986	chr22:21064286-21064976		chr22:21064890-21064976;chr22:21064977-21064986	chr22:21064976-21064977;chr22:21064986-21064987		4.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	2.25	0.00	0.00	5.00	0.00	3.33	1.37	0.00	2.56	2.13	0.00	0.00	2.00	0.00	0.00	1.28	1.28	0.137278	0.549706
K	intron_retention	SIRT7	chr17	-	chr17:79875596-79875705				chr17:79875595-79875596;chr17:79875705-79875706		14.29	15.79	11.54	NA	NA	NA	0.00	0.00	5.26	0.00	0.00	NA	5.88	NA	0.00	0.00	0.00	NA	NA	23.53	8.33	NA	20.69	NA	20.00	21.05	23.53	NA	8.33	0.00	20.00	26.09	25.00	NA	NA	26.67	15.79	20.00	4.21	0.949070	1.000000
K	intron_retention	TRABD	chr22	+	chr22:50635781-50635877				chr22:50635780-50635781;chr22:50635877-50635878		4.17	0.00	15.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.35	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	4.55	5.88	0.00	2.08	2.08	0.474754	1.000000
K	alternative_donor	CCHCR1	chr6	-	chr6:31112851-31112964	chr6:31112851-31112942		chr6:31112943-31112964	chr6:31112964-31112965		100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	87.50	NA	NA	NA	100.00	100.00	83.33	NA	NA	NA	80.00	81.82	92.86	NA	NA	NA	100.00	100.00	0.00	0.579507	0.799662
K	intron_retention	INPPL1	chr11	+	chr11:71939543-71939770				chr11:71939542-71939543;chr11:71939770-71939771		9.38	14.29	13.46	NA	NA	NA	5.26	2.22	3.92	0.00	4.55	0.00	1.49	0.00	2.38	0.00	3.96	NA	NA	13.64	NA	0.00	12.50	7.69	29.73	9.09	15.62	NA	7.69	NA	NA	8.57	NA	17.65	16.67	12.50	9.77	9.09	-0.68	0.751095	1.000000
N	jcn_only_AA	RGL2	chr6	-	chr6:33261694-33261810	chr6:33261713-33261810		chr6:33261694-33261712	chr6:33261693-33261694		2.38	0.00	1.49	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	16.67	NA	0.00	NA	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	1.67	NA	0.00	NA	0.00	3.77	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	DLG4	chr17	-	chr17:7097320-7097637				chr17:7097319-7097320;chr17:7097637-7097638		0.00	7.69	0.00	NA	NA	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	15.38	7.14	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	3.85	0.00	-3.85	0.760875	1.000000
K	intron_retention	MIEN1	chr17	-	chr17:37885859-37885937				chr17:37885858-37885859;chr17:37885937-37885938		0.00	5.66	2.78	0.00	3.77	4.76	0.00	0.00	2.44	3.12	0.00	0.00	0.00	0.00	2.17	5.45	2.63	0.00	1.85	0.00	2.13	0.00	4.00	9.52	0.00	13.64	2.86	3.33	4.23	0.00	22.22	15.15	5.56	3.57	2.56	6.90	0.93	0.00	-0.93	0.697486	1.000000
N	alternative_donor	SCCPDH	chr1	+	chr1:246927660-246929359;chr1:246927647-246929359	chr1:246927606-246929359		chr1:246927606-246927646;chr1:246927647-246927659	chr1:246927605-246927606;chr1:246927646-246927647		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
K	jcn_only_AA	SURF1	chr9	-	chr9:136219586-136220603	chr9:136219622-136220603		chr9:136219586-136219621	chr9:136219585-136219586		100.00	100.00	98.63	100.00	97.85	98.18	96.49	100.00	94.59	100.00	100.00	96.55	98.67	100.00	98.15	100.00	100.00	100.00	99.11	96.77	99.02	100.00	100.00	100.00	98.08	100.00	98.53	100.00	98.28	97.14	100.00	98.77	98.10	100.00	98.21	96.77	98.38	100.00	1.62	0.176043	0.663989
K	intron_retention	TAP2,XXbac-BPG246D15.9	chr6	-	chr6:32798218-32798394				chr6:32798217-32798218;chr6:32798394-32798395		2.11	3.57	2.14	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.00	1.82	0.00	3.57	0.00	7.14	0.00	0.84	0.75	1.72	0.00	5.11	2.29	1.54	0.00	9.80	0.00	7.41	0.00	1.33	1.33	0.863581	1.000000
N	jcn_only_AD	PDPN	chr1	+	chr1:13940901-13942399;chr1:13940911-13942399	chr1:13940907-13942399		chr1:13940901-13940906;chr1:13940907-13940910	chr1:13940900-13940901;chr1:13940906-13940907		62.34	47.22	66.09	62.75	61.11	71.28	NA	64.12	58.48	59.38	52.38	53.85	58.62	65.15	60.86	66.67	51.52	58.06	70.69	65.44	62.07	67.14	57.73	72.94	61.54	67.64	63.23	69.83	67.86	62.09	64.63	64.95	50.00	71.05	55.88	73.33	58.62	64.89	6.27	0.159335	0.657607
K	intron_retention		chr19	+	chr19:39395761-39395841				chr19:39395760-39395761;chr19:39395841-39395842		6.12	8.33	6.85	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.85	5.56	4.62	3.64	5.45	NA	2.63	1.64	2.08	0.00	1.61	9.43	6.59	4.35	3.51	0.00	2.15	4.35	3.24	-1.11	0.981101	1.000000
K	intron_retention	STX4	chr16	+	chr16:31045157-31045333				chr16:31045156-31045157;chr16:31045333-31045334		5.60	10.34	4.04	30.53	23.29	22.22	2.50	1.89	0.00	3.12	3.57	2.78	0.00	1.06	2.53	2.96	2.02	3.66	7.14	3.77	9.68	24.19	20.45	18.92	7.14	3.76	3.00	17.95	20.59	8.89	10.77	5.83	9.84	32.69	18.85	21.30	7.14	3.76	-3.38	0.842249	1.000000
N	intron_retention	ATXN2L	chr16	+	chr16:28847444-28847646				chr16:28847443-28847444;chr16:28847646-28847647		100.00	100.00	100.00	100.00	100.00	NA	92.00	78.26	86.67	76.19	82.61	NA	100.00	85.71	79.07	75.86	72.00	NA	100.00	100.00	93.55	92.00	100.00	90.00	100.00	100.00	100.00	95.65	86.49	82.61	100.00	100.00	100.00	96.55	100.00	94.59	100.00	100.00	0.00	0.527485	1.000000
K	intron_retention	KIAA0100	chr17	-	chr17:26943528-26943635				chr17:26943527-26943528;chr17:26943635-26943636		6.12	0.00	4.08	7.14	0.00	NA	0.00	0.00	2.00	5.26	0.00	4.35	0.00	0.00	0.00	2.56	0.00	0.00	2.63	3.03	4.26	10.34	3.61	8.33	0.00	3.70	2.74	0.00	1.45	0.00	0.00	5.88	1.85	1.92	1.45	7.69	0.00	1.51	1.51	0.634799	1.000000
K	cassette	ORMDL2	chr12	+	chr12:56211897-56213125	chr12:56211897-56212874;chr12:56212958-56213125		chr12:56212875-56212957			97.06	92.50	94.12	100.00	96.55	91.43	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	95.12	100.00	91.89	86.21	100.00	97.37	100.00	100.00	100.00	100.00	78.57	85.19	83.33	100.00	100.00	97.37	100.00	97.22	-2.78	0.758494	0.925284
K	intron_retention	RPS9	chr19	+	chr19:54710593-54711265				chr19:54710592-54710593;chr19:54711265-54711266		33.64	25.30	32.50	28.89	25.40	25.09	6.90	2.17	3.95	15.00	4.76	9.52	11.11	6.25	4.35	21.15	5.88	12.50	22.22	33.82	16.73	41.24	39.06	38.95	13.77	23.73	20.26	30.12	28.57	27.21	22.35	22.47	20.72	40.68	32.65	36.84	17.24	23.04	5.80	0.976168	1.000000
K	cassette	CRELD2	chr22	+	chr22:50315410-50316259	chr22:50315410-50315944;chr22:50316092-50316259		chr22:50315945-50316091			0.00	0.00	4.55	0.00	0.00	4.17	2.27	0.00	0.00	0.00	2.38	3.45	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	2.78	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.363217	0.709176
N	intron_retention		chr19	+	chr19:18284784-18287949				chr19:18284783-18284784;chr19:18287949-18287950		30.00	12.77	25.00	0.00	13.04	NA	5.56	12.50	8.33	12.50	10.00	0.00	8.33	15.38	15.38	0.00	11.76	NA	6.45	20.45	20.83	17.65	12.50	15.00	18.18	25.00	25.00	NA	18.75	23.08	52.94	66.67	28.00	18.18	46.15	30.00	10.55	22.73	12.18	0.508521	1.000000
N	intron_retention		chr20	-	chr20:3684559-3684681				chr20:3684558-3684559;chr20:3684681-3684682		97.14	100.00	100.00	NA	NA	100.00	97.90	98.51	100.00	100.00	97.33	100.00	96.18	100.00	99.32	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	86.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.12	97.04	100.00	2.96	0.464831	1.000000
N	alternative_donor	CNPY2	chr12	-	chr12:56709027-56709690;chr12:56709027-56709661	chr12:56709027-56709604		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		88.46	73.21	90.32	100.00	100.00	84.62	97.50	100.00	88.10	92.31	93.55	88.89	90.48	NA	97.44	90.00	96.43	90.91	89.66	100.00	85.00	100.00	85.00	86.67	100.00	100.00	84.85	100.00	86.67	100.00	80.95	96.97	91.67	100.00	82.61	80.56	91.08	100.00	8.92	0.544142	0.780071
K	intron_retention	SP100	chr2	+	chr2:231371161-231372707				chr2:231371160-231371161;chr2:231372707-231372708		8.11	0.00	9.38	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.94	27.27	NA	0.00	12.50	NA	7.69	4.00	5.26	0.00	2.50	14.29	13.33	0.00	13.64	5.26	12.77	0.00	5.32	5.32	0.163366	1.000000
K	intron_retention		chr17	+	chr17:7127050-7127131				chr17:7127049-7127050;chr17:7127131-7127132		5.92	5.51	6.29	4.48	5.69	2.56	1.15	0.00	0.84	0.00	0.35	0.00	0.00	1.69	1.16	0.00	0.47	0.00	1.29	6.63	2.87	6.15	7.43	5.15	4.66	6.25	6.72	2.22	4.08	2.09	8.33	10.22	2.79	4.42	4.89	3.88	2.04	6.08	4.04	0.506853	1.000000
K	intron_retention	CNPPD1	chr2	-	chr2:220037851-220038071				chr2:220037850-220037851;chr2:220038071-220038072		3.33	0.00	9.62	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	0.00	3.70	1.49	0.00	0.00	7.69	5.56	3.33	1.79	0.00	9.52	7.55	0.00	2.13	2.74	1.52	0.00	4.55	4.55	0.105286	1.000000
N	jcn_only_AA	AKAP8L	chr19	-	chr19:15491219-15491327	chr19:15491242-15491327		chr19:15491219-15491241	chr19:15491218-15491219		95.79	98.18	98.95	100.00	99.51	99.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	93.42	98.01	100.00	98.95	100.00	100.00	100.00	99.01	100.00	100.00	100.00	93.55	97.84	93.37	98.51	98.48	100.00	99.09	97.90	-1.19	0.593293	0.812401
N	jcn_only_AD	PLD2	chr17	+	chr17:4721640-4721788;chr17:4721702-4721788;chr17:4721686-4721788	chr17:4721681-4721788		chr17:4721640-4721680;chr17:4721681-4721685;chr17:4721686-4721701	chr17:4721639-4721640;chr17:4721680-4721681;chr17:4721685-4721686		100.00	100.00	91.53	NA	88.24	NA	100.00	96.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	NA	NA	86.36	100.00	NA	93.10	NA	NA	100.00	93.62	100.00	91.67	100.00	83.33	90.16	100.00	96.55	87.88	95.65	100.00	95.72	-4.28	0.074438	0.612648
K	alternative_first_exon	SCNM1	chr1	+	chr1:151131977-151138946;chr1:151129199-151138946	chr1:151138680-151138946,chr1:151138729-151138946	chr1:151129105-151129198	chr1:151138555-151138679			72.00	52.78	74.29	NA	72.00	66.67	41.38	86.36	88.24	59.26	42.50	42.86	47.37	82.61	96.67	63.33	42.86	47.83	57.14	79.17	78.79	NA	60.00	62.50	53.33	91.43	75.00	75.00	57.58	79.17	100.00	90.70	53.85	68.18	65.38	65.38	53.05	84.48	31.43	0.000072	0.004820
K	intron_retention	VAC14	chr16	-	chr16:70721994-70726723				chr16:70721993-70721994;chr16:70726723-70726724		9.72	10.18	12.50	12.22	13.12	13.27	5.95	8.33	5.77	8.25	10.66	6.90	8.75	4.55	7.41	13.25	9.47	8.11	14.00	10.00	8.65	18.75	13.68	10.87	15.22	8.82	10.14	22.22	16.07	10.96	6.25	12.50	11.22	20.37	20.48	20.34	10.70	8.57	-2.12	0.952956	1.000000
K	intron_retention		chr11	-	chr11:613866-613950				chr11:613865-613866;chr11:613950-613951		9.89	12.90	20.00	22.54	18.18	17.83	0.00	2.72	2.62	5.26	0.00	3.27	3.70	2.71	4.08	5.49	8.00	2.50	22.22	10.82	18.92	18.84	13.64	21.29	31.82	8.92	14.68	21.83	14.29	16.29	17.48	20.60	24.14	24.41	23.53	19.88	17.56	9.41	-8.15	0.706345	1.000000
K	intron_retention	C1orf122	chr1	+	chr1:38273979-38274202				chr1:38273978-38273979;chr1:38274202-38274203		23.33	11.11	19.55	18.00	7.69	20.41	0.00	7.50	2.27	3.00	0.00	3.45	6.25	4.90	2.18	3.53	4.17	5.26	6.45	14.58	15.69	18.60	9.76	18.75	4.55	22.03	16.38	8.00	14.81	24.42	21.28	18.27	11.63	11.54	5.88	17.31	6.35	17.93	11.58	0.361803	1.000000
N	cassette	UNC13D	chr17	-	chr17:73826743-73827323	chr17:73826743-73827178;chr17:73827251-73827323		chr17:73827179-73827250			100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.29	100.00	100.00	100.00	100.00	NA	94.44	NA	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr11	-	chr11:93463879-93464315				chr11:93463878-93463879;chr11:93464315-93464316		20.00	2.08	11.90	5.50	7.14	4.08	0.00	NA	7.69	4.17	7.14	0.00	13.04	NA	13.04	10.00	10.71	0.00	2.94	16.22	7.95	16.46	13.33	20.00	1.25	16.00	11.63	14.89	14.29	8.82	9.86	14.12	4.19	11.25	14.29	14.29	2.51	16.11	13.60	0.047840	1.000000
N	alternative_acceptor	GAK	chr4	-	chr4:860193-860743;chr4:860290-860743;chr4:860365-860743	chr4:860323-860743		chr4:860193-860289;chr4:860290-860322;chr4:860323-860364	chr4:860192-860193;chr4:860289-860290;chr4:860322-860323		61.54	51.85	70.45	50.00	36.00	30.77	65.52	54.76	61.54	40.62	48.48	36.84	63.33	52.27	55.26	50.00	44.19	33.33	NA	45.71	55.56	47.83	51.35	50.00	68.75	71.11	60.53	50.00	57.14	47.06	56.82	57.69	52.38	46.34	43.75	44.23	63.33	55.79	-7.54	0.518718	0.804582
K	alternative_last_exon	MMP24-AS1	chr20	-	chr20:33859949-33865848	chr20:33865736-33865848	chr20:33859808-33859948	chr20:33864953-33865735			94.59	100.00	90.32	100.00	100.00	98.78	100.00	96.00	93.33	100.00	100.00	98.31	98.55	96.83	96.08	97.18	100.00	100.00	100.00	100.00	93.94	96.30	100.00	100.00	100.00	100.00	89.66	100.00	97.22	100.00	96.77	93.10	100.00	100.00	100.00	100.00	100.00	96.80	-3.20	0.043673	0.227559
N	coord_cassette	SPCS2	chr11	+	chr11:74676163-74687901	chr11:74676163-74676807;chr11:74676969-74680609;chr11:74680745-74687901		chr11:74676808-74676968;chr11:74680610-74680744			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AA	LST1,UST	chr6	+	chr6:31555744-31556294	chr6:31555744-31556273		chr6:31556274-31556294	chr6:31556294-31556295		4.00	4.33	7.69	5.88	12.63	9.52	9.81	12.50	21.43	8.04	7.28	10.64	7.73	11.11	16.67	11.70	7.65	9.26	6.73	8.33	5.80	5.26	8.45	17.65	6.40	5.88	0.00	6.25	9.35	11.30	11.76	16.67	9.81	3.45	6.76	6.59	7.23	9.72	2.49	0.401597	0.673763
K	intron_retention	WDR46	chr6	-	chr6:33247152-33247273				chr6:33247151-33247152;chr6:33247273-33247274		12.50	11.36	31.25	9.80	14.75	6.94	0.00	15.38	0.00	0.00	0.00	NA	3.57	NA	13.04	2.86	7.41	NA	8.08	0.00	9.84	11.54	17.07	NA	9.71	NA	5.00	7.69	9.68	0.00	23.53	16.67	15.32	6.67	4.35	7.14	8.89	13.94	5.05	0.776100	1.000000
K	intron_retention	CCAR2	chr8	+	chr8:22473426-22473524				chr8:22473425-22473426;chr8:22473524-22473525		0.00	0.00	14.58	NA	0.00	NA	0.00	0.00	0.00	0.00	2.38	0.00	1.85	0.00	0.00	0.00	0.00	0.00	NA	5.56	0.00	0.00	5.41	0.00	0.00	0.00	6.98	0.00	0.00	0.00	0.00	0.00	0.00	3.33	2.33	0.00	0.00	0.00	0.00	0.917160	1.000000
K	cassette	TCF25	chr16	+	chr16:89952375-89958600	chr16:89952375-89954059;chr16:89954090-89958600		chr16:89954060-89954089			100.00	100.00	97.96	NA	100.00	NA	96.23	94.44	94.12	100.00	100.00	100.00	97.78	100.00	95.12	100.00	100.00	95.45	100.00	96.30	100.00	100.00	93.48	100.00	76.00	100.00	100.00	95.00	100.00	100.00	92.00	98.00	100.00	100.00	100.00	98.08	98.89	98.15	-0.74	0.622445	0.862437
N	alternative_acceptor		chr19	+	chr19:56186802-56189872;chr19:56186802-56188411	chr19:56186802-56189892		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		94.59	96.67	93.94	NA	100.00	NA	93.94	92.68	97.30	91.43	94.74	100.00	94.87	100.00	93.75	92.86	95.60	100.00	NA	94.74	100.00	100.00	95.12	NA	91.18	97.56	90.32	100.00	93.33	NA	80.00	82.14	69.23	100.00	95.24	100.00	93.94	94.66	0.72	0.507021	0.796927
K	cassette	USP48	chr1	-	chr1:22016593-22027990	chr1:22016593-22021558;chr1:22021715-22027990		chr1:22021559-22021714			100.00	100.00	95.35	NA	92.86	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	90.62	100.00	96.30	100.00	100.00	NA	100.00	100.00	96.88	NA	96.30	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	MRPS36	chr5	+	chr5:68513699-68524026	chr5:68513699-68522168;chr5:68522229-68524026		chr5:68522169-68522228			94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	96.67	100.00	100.00	100.00	100.00	95.24	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	UPF1	chr19	+	chr19:18976260-18976369				chr19:18976259-18976260;chr19:18976369-18976370		0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	1.75	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.818135	1.000000
K	intron_retention	MED16	chr19	-	chr19:868252-868415				chr19:868251-868252;chr19:868415-868416		96.00	100.00	91.67	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	100.00	100.00	95.83	93.62	100.00	100.00	100.00	100.00	100.00	0.00	0.944502	1.000000
K	intron_retention		chr9	+	chr9:100839300-100840474				chr9:100839299-100839300;chr9:100840474-100840475		3.03	0.00	0.00	0.57	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.60	0.00	0.00	1.59	2.04	0.00	0.00	0.97	0.40	6.90	10.00	4.35	2.20	1.45	1.59	6.00	3.64	2.74	1.05	2.22	0.60	0.80	2.54	1.74	0.809490	1.000000
N	alternative_last_exon	SIGLEC9	chr19	+	chr19:51631768-51632056,chr19:51631768-51633254,chr19:51631768-51633261;chr19:51631768-51641848;chr19:51631768-51633147;chr19:51631768-51650477	chr19:51631768-51639218	chr19:51641849-51641891;chr19:51633148-51633567;chr19:51650478-51650574	chr19:51639219-51639908			4.55	3.27	4.17	4.17	3.73	6.56	13.01	11.24	4.65	7.69	5.91	11.29	11.90	7.78	2.44	9.60	9.90	19.05	4.17	5.97	5.98	7.14	4.29	4.65	7.34	6.98	6.06	6.82	7.83	8.33	4.00	2.63	3.25	8.51	5.83	11.76	5.75	6.47	0.72	0.851308	0.915279
N	alternative_acceptor	LILRB4	chr19	+	chr19:55178201-55179088;chr19:55178201-55178815;chr19:55178201-55178261;chr19:55178201-55179085	chr19:55178201-55178293		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		3.41	1.42	2.18	2.41	1.30	3.40	0.34	0.75	0.55	0.36	0.24	0.58	0.58	1.02	0.77	0.89	0.35	0.67	1.63	5.36	1.26	4.38	4.21	5.08	1.41	2.55	2.20	4.21	1.26	2.28	1.69	2.01	0.70	3.53	2.23	3.38	1.05	2.12	1.07	0.097502	0.598353
K	intron_retention	TMEM205	chr19	-	chr19:11456305-11456802				chr19:11456304-11456305;chr19:11456802-11456803		11.48	17.78	18.13	14.29	16.95	11.43	12.35	6.90	9.24	11.11	7.69	4.35	6.90	11.43	14.85	8.00	5.88	3.70	10.00	16.33	10.07	10.42	7.25	13.89	20.41	15.62	18.24	7.89	9.09	11.59	7.50	15.15	17.46	11.90	10.71	11.76	14.91	11.46	-3.45	0.950794	1.000000
K	cassette	ILK	chr11	+	chr11:6625591-6629623	chr11:6625591-6629275;chr11:6629442-6629623		chr11:6629276-6629441			91.46	77.55	79.28	92.86	81.40	NA	98.53	96.90	96.00	97.47	94.71	96.61	96.08	95.24	94.95	96.30	96.13	97.44	73.33	93.33	91.30	93.10	91.07	96.97	100.00	97.65	90.91	97.56	95.40	91.18	94.55	86.02	80.00	84.85	85.71	90.91	88.04	94.89	6.86	0.197392	0.709176
N	coord_cassette	CDK5RAP3	chr17	+	chr17:46051815-46054077	chr17:46051815-46052524;chr17:46052704-46052879;chr17:46053005-46053234;chr17:46053380-46054077		chr17:46052525-46052703;chr17:46052880-46053004;chr17:46053235-46053379			100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	88.89	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	alternative_acceptor	IDUA,TMEM33	chr4	+	chr4:41951403-41956086	chr4:41951403-41955776		chr4:41955777-41956086	chr4:41956086-41956087		0.00	7.69	1.67	0.00	0.00	NA	0.00	0.00	0.00	1.33	1.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	1.89	0.00	0.00	0.00	0.221628	0.672865
K	intron_retention		chr20	+	chr20:33147258-33147539				chr20:33147257-33147258;chr20:33147539-33147540		12.20	0.00	11.63	8.33	10.00	8.49	NA	1.06	0.50	0.00	NA	0.00	NA	1.40	1.22	0.00	NA	0.00	5.26	8.86	7.03	8.33	0.00	9.52	14.29	10.51	7.18	5.56	0.00	4.31	13.76	8.99	5.26	7.69	16.67	9.02	5.26	9.68	4.42	0.934948	1.000000
N	alternative_last_exon	TSC22D4	chr7	-	chr7:100064861-100065174;chr7:100061653-100065174;chr7:100061310-100065174	chr7:100064792-100065174	chr7:100061586-100061652;chr7:100060986-100061309	chr7:100064142-100064791			96.26	95.44	91.61	100.00	99.38	100.00	100.00	98.60	100.00	100.00	100.00	100.00	100.00	99.30	100.00	100.00	100.00	100.00	97.99	98.35	98.94	100.00	99.12	100.00	98.61	100.00	94.66	96.55	99.01	100.00	97.06	88.97	93.99	100.00	98.80	98.65	98.30	98.47	0.17	0.623501	0.760703
K	intron_retention	ACSF2	chr17	+	chr17:48551366-48551559				chr17:48551365-48551366;chr17:48551559-48551560		0.00	0.00	2.86	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	3.70	0.00	0.00	NA	0.00	NA	1.99	5.26	2.44	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.786907	1.000000
N	cassette	EDC4	chr16	+	chr16:67916498-67917470	chr16:67916498-67916581;chr16:67916769-67917470		chr16:67916582-67916768			100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.45	100.00	100.00	88.24	89.58	100.00	100.00	100.00	100.00	100.00	94.29	100.00	95.00	94.00	88.89	96.43	100.00	96.77	100.00	100.00	0.00	0.411573	0.726584
K	alternative_acceptor	AKT1	chr14	-	chr14:105235964-105237081	chr14:105236758-105237081		chr14:105235964-105236757	chr14:105235963-105235964		94.70	94.23	94.50	90.48	90.23	80.70	95.86	94.17	96.08	94.95	95.33	90.79	100.00	94.55	100.00	95.45	96.03	96.00	85.42	95.74	83.67	92.98	95.60	96.88	100.00	97.46	96.15	92.00	93.51	88.54	92.86	90.24	88.89	93.75	94.57	93.70	95.05	94.62	-0.42	0.746900	0.904566
K	alternative_last_exon	SETD3	chr14	-	chr14:99876588-99879287;chr14:99872928-99879287	chr14:99876553-99879287	chr14:99872853-99872927	chr14:99876141-99876552			15.38	46.15	10.26	NA	68.75	NA	13.04	18.52	10.53	21.43	12.50	23.08	10.64	9.09	4.00	9.09	10.26	28.57	90.91	20.00	NA	16.67	22.58	33.33	NA	11.11	12.50	25.00	23.33	NA	NA	13.33	90.00	15.62	11.90	21.74	46.15	15.38	-30.77	0.115256	0.333781
K	alternative_first_exon	C6orf106	chr6	-	chr6:34622557-34656617;chr6:34622557-34664222	chr6:34622557-34639612	chr6:34664223-34664636	chr6:34639613-34639733			2.38	0.00	1.47	NA	NA	NA	1.79	0.00	0.00	3.85	2.17	0.00	0.00	1.35	1.59	1.79	2.27	0.00	NA	0.00	NA	0.00	4.35	0.00	0.00	0.00	0.00	5.88	0.00	NA	0.00	0.00	NA	0.00	2.33	0.00	0.00	0.00	0.00	0.783418	0.857265
K	cassette	GLA	chrX	-	chrX:100653935-100655653	chrX:100653935-100654731;chrX:100654789-100655653		chrX:100654732-100654788			3.99	0.00	4.85	5.51	3.03	2.13	0.00	1.83	0.00	0.71	0.68	0.92	1.36	1.31	2.86	0.75	0.00	2.06	0.00	4.65	2.37	3.60	3.35	4.79	0.00	5.94	2.58	2.47	1.64	3.45	6.41	4.33	0.00	4.28	4.41	7.69	0.00	4.32	4.32	0.005792	0.255099
K	alternative_last_exon	SUV420H1	chr11	-	chr11:67933456-67934448,chr11:67933870-67934448;chr11:67926639-67934448	chr11:67933416-67934448	chr11:67922330-67926638	chr11:67933186-67933415			31.25	67.86	14.29	80.95	77.27	89.74	23.53	18.18	23.53	35.29	41.38	50.00	33.33	18.18	18.75	43.48	30.00	NA	76.19	35.29	76.19	61.54	34.78	58.33	77.27	30.00	36.84	62.50	54.55	73.68	58.33	37.50	84.00	50.00	40.91	57.89	72.03	30.62	-41.40	0.045030	0.227559
N	jcn_only_AA		chr11	+	chr11:610762-610962	chr11:610762-610953		chr11:610954-610962	chr11:610962-610963		93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	SP110	chr2	-	chr2:231064668-231065600;chr2:231050854-231065600	chr2:231050860-231065600		chr2:231050854-231050859;chr2:231050860-231064667	chr2:231050853-231050854;chr2:231050859-231050860		98.36	100.00	96.15	NA	NA	98.77	100.00	99.24	98.70	100.00	NA	98.44	100.00	99.29	98.95	96.43	NA	98.81	100.00	99.13	100.00	NA	NA	94.29	100.00	97.89	100.00	97.50	NA	99.25	99.02	98.41	100.00	96.30	100.00	96.80	100.00	99.07	-0.93	0.003813	0.401280
N	alternative_acceptor	ITFG1	chr16	-	chr16:47196576-47252778;chr16:47249121-47252778	chr16:47196513-47252778		chr16:47196513-47196575;chr16:47196576-47249120	chr16:47196512-47196513;chr16:47196575-47196576		7.69	2.44	5.88	NA	6.90	NA	8.33	3.70	7.32	8.00	9.30	10.34	8.51	4.55	2.86	10.00	9.38	14.29	5.88	8.82	2.63	0.00	5.13	0.00	0.00	7.69	7.14	0.00	3.12	5.56	7.41	4.26	5.88	6.45	10.34	7.14	5.88	7.55	1.67	0.384664	0.709013
K	intron_retention	HNRNPA1	chr12	+	chr12:54678102-54680445				chr12:54678101-54678102;chr12:54680445-54680446		35.71	32.39	37.21	25.37	21.43	22.78	0.00	NA	5.88	13.33	36.36	NA	12.50	NA	13.04	15.79	46.15	NA	22.45	21.43	18.18	33.82	49.02	41.67	11.32	38.46	37.78	32.14	39.13	30.19	18.60	24.62	18.26	37.50	52.50	37.21	15.38	28.57	13.19	0.435292	1.000000
K	intron_retention	STRN4	chr19	-	chr19:47223596-47223792				chr19:47223595-47223596;chr19:47223792-47223793		10.17	6.38	12.50	9.52	9.62	0.00	0.00	6.25	5.26	6.45	6.45	4.55	6.00	6.38	8.82	7.32	6.52	0.00	3.23	6.38	7.50	6.90	13.56	16.13	0.00	11.11	11.86	0.00	4.76	0.00	17.78	14.29	11.11	20.00	12.73	11.11	4.62	8.28	3.66	0.399262	1.000000
K	intron_retention		chr22	-	chr22:50966147-50966940				chr22:50966146-50966147;chr22:50966940-50966941		8.92	8.94	18.34	13.14	13.09	11.76	0.31	0.93	1.19	0.82	1.05	0.73	0.75	1.54	3.02	2.23	1.05	0.76	8.38	9.59	5.30	17.35	17.80	17.59	16.11	7.38	12.48	6.87	9.04	6.03	9.05	14.30	8.39	18.34	16.89	16.18	8.39	8.15	-0.24	0.760977	1.000000
K	alternative_donor	HM13	chr20	+	chr20:30156028-30156922	chr20:30156084-30156922		chr20:30156028-30156083	chr20:30156027-30156028		51.85	45.95	50.00	42.11	56.25	53.85	60.00	53.85	60.00	57.14	39.13	50.00	62.50	66.67	50.00	50.00	47.83	46.15	66.67	54.55	63.89	50.00	54.55	70.00	55.17	53.33	52.63	46.15	62.50	61.11	54.55	53.85	61.29	46.15	50.00	56.00	60.64	54.20	-6.44	0.467138	0.723919
K	jcn_only_AD	ARHGAP27,STAT5B	chr17	-	chr17:43482473-43483212	chr17:43482473-43483041		chr17:43483042-43483212	chr17:43483212-43483213		100.00	100.00	95.24	NA	NA	NA	100.00	98.11	100.00	100.00	90.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.94	NA	NA	100.00	100.00	100.00	96.15	93.75	NA	NA	NA	100.00	80.00	NA	NA	100.00	96.43	100.00	99.06	-0.94	0.114849	0.646283
K	jcn_only_AA	TMEM165	chr4	+	chr4:56290811-56318405	chr4:56290811-56291542		chr4:56291543-56318405	chr4:56318405-56318406		96.97	100.00	95.16	98.18	100.00	100.00	95.24	94.58	93.85	100.00	96.77	97.56	98.47	95.05	96.90	98.84	98.17	100.00	100.00	95.36	96.88	98.21	97.44	100.00	100.00	94.74	96.20	98.85	100.00	97.56	96.77	96.77	98.36	97.16	100.00	98.13	99.23	95.20	-4.03	0.007499	0.451542
N	alternative_acceptor	TRPC4AP	chr20	-	chr20:33592168-33592260;chr20:33591894-33592260	chr20:33591420-33592260		chr20:33591420-33591893;chr20:33591894-33592167	chr20:33591419-33591420;chr20:33591893-33591894		96.26	96.77	97.35	92.86	97.92	100.00	97.83	98.21	98.30	98.68	98.33	96.97	96.90	98.57	96.40	95.59	97.35	93.65	100.00	95.05	93.83	90.38	97.00	91.30	97.14	94.35	95.48	93.15	95.24	92.05	94.90	96.20	100.00	91.92	95.50	90.75	97.48	95.66	-1.83	0.078420	0.585944
N	intron_retention		chr3	+	chr3:15301826-15301962				chr3:15301825-15301826;chr3:15301962-15301963		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	93.88	100.00	100.00	100.00	92.59	100.00	100.00	100.00	97.14	NA	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	96.94	100.00	3.06	0.348573	1.000000
K	cassette	NFU1	chr2	-	chr2:69646737-69659033	chr2:69646737-69650713;chr2:69650850-69659033		chr2:69650714-69650849			87.50	82.35	86.49	NA	80.00	NA	94.29	94.74	90.91	90.00	97.14	94.44	92.31	94.44	86.84	88.24	100.00	100.00	77.78	100.00	88.57	100.00	89.29	83.33	NA	85.71	87.88	80.00	96.00	100.00	76.47	88.89	72.22	90.48	95.83	95.65	82.35	90.97	8.62	0.298528	0.709176
N	alternative_acceptor	SRI	chr7	-	chr7:87837877-87838653	chr7:87837881-87838653		chr7:87837877-87837880	chr7:87837876-87837877		97.14	100.00	100.00	98.21	98.57	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	97.50	100.00	99.07	100.00	100.00	93.48	100.00	100.00	100.00	98.36	100.00	100.00	100.00	98.75	98.68	100.00	100.00	100.00	100.00	100.00	0.00	0.808374	0.931261
K	intron_retention	PITHD1	chr1	+	chr1:24112914-24113764				chr1:24112913-24112914;chr1:24113764-24113765		0.00	0.00	6.00	0.00	0.87	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.61	0.00	0.00	0.00	1.96	0.00	1.24	0.00	8.57	5.77	0.00	0.00	0.96	3.12	0.00	0.00	0.00	0.507320	1.000000
K	alternative_last_exon	CPT1A	chr11	-	chr11:68522320-68527036	chr11:68525199-68527036	chr11:68522088-68522319	chr11:68522357-68525198			100.00	100.00	100.00	92.31	95.65	NA	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	96.88	100.00	100.00	90.91	100.00	100.00	100.00	96.72	100.00	93.33	96.30	100.00	100.00	98.21	100.00	100.00	100.00	89.66	97.06	92.68	100.00	96.66	100.00	3.34	0.125814	0.340761
N	alternative_donor	TRPC4AP	chr20	-	chr20:33591420-33592260	chr20:33591420-33591675		chr20:33591676-33592260	chr20:33592260-33592261		4.26	2.17	3.66	2.50	1.05	0.00	3.23	1.79	2.94	2.60	2.48	3.03	3.10	1.78	4.37	7.14	3.51	6.35	3.45	6.49	5.00	7.84	4.90	11.58	5.56	7.14	4.52	8.11	4.76	8.99	5.10	4.32	2.44	9.00	4.50	10.80	3.17	4.68	1.51	0.327611	0.650093
N	alternative_acceptor	IL13RA1	chrX	+	chrX:117910475-117914480;chrX:117910475-117925724;chrX:117910475-117925052	chrX:117910475-117938894		chrX:117914481-117925052;chrX:117925053-117925724;chrX:117925725-117938894	chrX:117925052-117925053;chrX:117925724-117925725;chrX:117938894-117938895		15.09	21.57	7.59	0.00	9.38	0.00	5.71	15.00	2.94	10.00	8.57	0.00	6.67	0.00	7.41	0.00	3.33	NA	23.08	5.88	17.65	0.00	5.26	0.00	17.24	19.23	8.77	14.29	0.00	14.29	20.00	10.00	10.00	10.00	8.00	7.14	13.62	15.04	1.43	0.743019	0.903518
N	alternative_acceptor		chrX	+	chrX:48546486-48546707	chrX:48546486-48546688		chrX:48546689-48546707	chrX:48546707-48546708		100.00	100.00	98.89	NA	100.00	NA	98.28	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	90.91	98.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.766888	0.913895
K	intron_retention	MYO1F	chr19	-	chr19:8614485-8615049				chr19:8614484-8614485;chr19:8615049-8615050		0.00	1.40	0.00	8.33	1.49	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.70	1.59	0.00	0.83	0.00	2.53	0.00	0.39	0.00	0.00	0.00	0.00	1.21	5.17	0.00	0.76	0.00	1.96	0.00	-1.96	0.289363	1.000000
N	alternative_last_exon		chr5	+	chr5:140077664-140080403	chr5:140077664-140078077	chr5:140080404-140080497	chr5:140078078-140078876			100.00	100.00	98.85	100.00	100.00	100.00	100.00	100.00	97.67	100.00	97.30	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	98.57	96.12	100.00	100.00	100.00	98.91	100.00	100.00	0.00	0.363217	0.535374
K	intron_retention	ARL4C	chr2	-	chr2:235404481-235404655				chr2:235404480-235404481;chr2:235404655-235404656		100.00	89.02	100.00	89.13	91.18	95.12	92.00	88.89	81.82	93.57	93.87	82.35	92.73	100.00	NA	94.07	90.46	100.00	88.10	100.00	87.50	97.67	92.23	90.24	84.91	85.71	100.00	90.16	90.10	88.24	94.12	88.46	92.19	95.79	91.26	92.11	90.51	97.06	6.55	0.260366	1.000000
N	jcn_only_AA		chr9	+	chr9:35608507-35608842;chr9:35608507-35609103	chr9:35608507-35608858		chr9:35608843-35608858;chr9:35608859-35609103	chr9:35608858-35608859;chr9:35609103-35609104		100.00	100.00	100.00	100.00	100.00	NA	97.50	100.00	100.00	93.33	95.16	93.55	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	100.00	98.04	100.00	96.08	100.00	100.00	100.00	98.44	100.00	100.00	100.00	0.00	0.551638	0.784834
K	intron_retention		chr7	-	chr7:26230081-26230612				chr7:26230080-26230081;chr7:26230612-26230613		14.29	10.67	16.73	9.60	8.71	7.08	21.05	9.62	5.36	16.67	13.04	0.00	12.50	9.52	19.12	10.00	4.76	7.69	7.52	11.97	9.23	15.17	11.24	18.50	6.44	16.81	16.85	13.67	15.43	14.81	11.59	12.05	7.44	15.66	15.45	16.20	9.09	11.78	2.69	0.625196	1.000000
K	jcn_only_AD	ADAP2	chr17	+	chr17:29283410-29284852	chr17:29283488-29284852		chr17:29283410-29283487	chr17:29283409-29283410		92.45	92.86	93.55	NA	94.67	NA	95.24	93.96	96.94	88.89	95.59	95.00	95.56	94.57	94.90	93.94	95.79	100.00	88.89	91.24	95.65	76.92	90.53	100.00	90.32	91.81	92.86	88.46	96.55	91.67	91.30	92.86	88.00	93.62	92.91	92.31	91.59	92.13	0.54	0.621689	0.813918
K	intron_retention	ARF6	chr14	+	chr14:50359876-50359973				chr14:50359875-50359876;chr14:50359973-50359974		8.89	7.41	8.00	NA	11.76	NA	6.35	8.00	7.25	9.86	12.35	17.65	4.71	11.11	8.00	11.76	13.27	13.56	NA	8.11	5.26	12.00	6.86	9.38	0.00	7.89	2.38	3.85	11.76	7.84	21.74	13.33	NA	10.71	10.34	7.41	5.53	8.50	2.97	0.151022	1.000000
K	intron_retention	INO80E	chr16	+	chr16:30007713-30007867				chr16:30007712-30007713;chr16:30007867-30007868		9.52	19.23	13.89	NA	5.00	NA	2.78	0.00	10.71	0.00	0.00	NA	3.23	0.00	4.76	0.00	2.13	0.00	7.69	0.00	0.00	NA	11.11	NA	2.50	0.00	10.00	NA	14.29	NA	0.00	0.00	7.14	NA	0.00	10.00	5.18	0.00	-5.18	0.426386	1.000000
N	jcn_only_AA	IFT43	chr14	+	chr14:76549633-76549800	chr14:76549633-76549782		chr14:76549783-76549800	chr14:76549800-76549801		0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	1.85	NA	0.00	NA	0.00	6.25	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AA	RNH1	chr11	-	chr11:499924-500483;chr11:500015-500483	chr11:500000-500483		chr11:499924-499999;chr11:500000-500014	chr11:499923-499924;chr11:499999-500000		97.83	97.01	100.00	94.50	96.46	97.78	97.27	98.23	98.97	97.84	98.38	96.94	96.19	96.55	96.55	94.51	96.03	98.54	95.71	96.15	96.00	93.71	95.99	97.55	95.08	94.05	94.44	97.27	96.88	95.83	96.43	96.55	95.49	96.52	95.76	96.62	95.95	96.49	0.54	0.568837	0.796382
K	jcn_only_AA	SIPA1L1	chr14	+	chr14:72202109-72204960	chr14:72202109-72204957		chr14:72204958-72204960	chr14:72204960-72204961		60.50	54.02	65.17	63.64	63.38	58.43	60.00	51.43	68.09	61.11	60.00	45.83	56.25	72.22	66.67	63.64	83.33	64.71	67.86	45.83	65.38	52.63	57.58	56.52	51.28	64.06	57.50	56.52	61.76	59.15	61.46	63.19	67.35	65.38	62.86	65.45	58.12	60.98	2.86	0.965733	0.987545
K	alternative_donor	NACA	chr12	-	chr12:57118308-57118609;chr12:57118308-57119046	chr12:57118308-57118745		chr12:57118610-57118745;chr12:57118746-57119046	chr12:57118745-57118746;chr12:57119046-57119047		7.10	9.43	7.04	4.46	6.82	1.92	7.58	10.43	11.89	3.76	5.66	4.60	7.62	11.32	10.88	4.22	6.85	5.13	10.92	9.01	7.34	5.94	8.48	4.65	9.09	9.09	6.87	7.33	7.10	4.14	6.86	8.94	9.59	6.25	9.25	6.01	9.26	9.05	-0.21	0.939007	0.984606
K	cassette	PRRC2B	chr9	+	chr9:134367648-134371126	chr9:134367648-134369791;chr9:134369874-134371126		chr9:134369792-134369873			17.65	35.29	16.22	NA	NA	NA	50.00	38.89	47.83	34.78	34.15	45.45	32.43	27.78	42.86	40.00	44.12	25.00	NA	28.57	NA	33.33	19.05	31.25	NA	35.71	20.00	NA	NA	NA	NA	17.65	40.00	25.93	25.00	24.14	37.64	28.57	-9.07	0.112709	0.709176
K	cassette	TNIP2	chr4	-	chr4:2746234-2747172	chr4:2746234-2746423;chr4:2746673-2747172		chr4:2746424-2746672			84.09	84.21	84.62	80.65	77.55	89.47	94.59	96.67	94.23	93.29	86.89	97.22	93.55	91.76	92.17	90.62	88.46	95.00	100.00	87.10	90.00	80.39	84.72	90.00	NA	87.91	85.00	86.75	83.64	88.64	90.38	86.90	75.00	81.25	73.08	85.61	93.55	89.14	-4.41	0.970980	0.992974
K	intron_retention	CXXC1	chr18	-	chr18:47810186-47810263				chr18:47810185-47810186;chr18:47810263-47810264		13.73	5.43	9.33	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.23	0.00	0.00	NA	1.92	12.50	10.71	18.75	6.12	0.00	0.00	3.45	6.56	0.00	2.50	6.67	25.53	11.83	7.27	7.69	9.52	4.00	0.96	7.97	7.01	0.335971	1.000000
N	cassette	XPNPEP1	chr10	-	chr10:111630663-111633124	chr10:111630663-111631549;chr10:111631620-111633124		chr10:111631550-111631619			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	LAMB2	chr3	-	chr3:49158796-49158865				chr3:49158795-49158796;chr3:49158865-49158866		13.51	11.83	13.79	0.00	11.21	3.14	0.00	0.00	0.00	0.00	8.70	0.00	2.44	0.00	4.35	0.00	7.50	4.00	14.29	4.55	5.81	5.88	5.66	4.17	8.50	6.45	11.76	4.44	6.45	6.90	15.79	22.22	16.41	5.00	4.17	3.85	10.16	5.50	-4.66	0.916987	1.000000
K	intron_retention		chr19	+	chr19:59061652-59061743				chr19:59061651-59061652;chr19:59061743-59061744		6.14	1.74	3.45	1.66	1.72	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.56	0.00	0.00	0.00	3.22	3.95	4.81	3.57	1.89	3.03	1.98	1.49	1.27	1.41	0.65	0.00	14.96	7.51	8.84	2.74	3.51	3.16	1.86	2.72	0.86	0.728352	1.000000
N	jcn_only_AA	NR1H2	chr19	+	chr19:50882054-50882348;chr19:50882054-50882390;chr19:50882054-50882343	chr19:50882054-50882258		chr19:50882259-50882343;chr19:50882344-50882348;chr19:50882349-50882390	chr19:50882343-50882344;chr19:50882348-50882349;chr19:50882390-50882391		97.03	93.68	97.35	94.74	96.20	92.00	96.67	100.00	97.84	95.88	91.09	96.49	98.18	95.65	98.08	93.00	90.62	88.64	91.49	98.73	100.00	98.04	96.00	97.67	100.00	96.30	98.13	97.30	94.74	93.65	100.00	97.62	94.55	97.89	98.88	95.70	95.61	97.88	2.27	0.178625	0.663989
N	cassette	TM7SF3	chr12	-	chr12:27128592-27132716;chr12:27128592-27133498	chr12:27128592-27129192;chr12:27129291-27132716,chr12:27129291-27133498		chr12:27129193-27129290			70.00	80.56	77.42	NA	100.00	NA	100.00	85.71	96.43	100.00	97.87	100.00	98.65	90.91	92.86	96.77	100.00	100.00	NA	75.00	85.71	86.67	87.18	93.33	NA	NA	79.31	100.00	100.00	100.00	80.00	71.43	77.78	94.74	97.67	89.13	89.61	80.00	-9.61	0.251695	0.709176
N	jcn_only_AD	SHARPIN	chr8	-	chr8:145158129-145159167;chr8:145158129-145158927;chr8:145158129-145158749;chr8:145158129-145158455	chr8:145158129-145159319		chr8:145158456-145158749;chr8:145158750-145158927;chr8:145158928-145159167;chr8:145159168-145159319	chr8:145158749-145158750;chr8:145158927-145158928;chr8:145159167-145159168;chr8:145159319-145159320		12.50	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	CTB-50L17.10	chr19	+	chr19:4496403-4497954	chr19:4496403-4496915		chr19:4496916-4497954	chr19:4497954-4497955		1.67	0.98	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	2.38	NA	0.00	0.00	1.39	0.00	0.00	0.00	2.13	2.94	1.12	5.00	3.12	4.55	0.00	0.83	0.83	0.225571	0.679130
K	cassette	LRSAM1	chr9	+	chr9:130255177-130258242	chr9:130255177-130257598;chr9:130257698-130258242		chr9:130257599-130257697			100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	NA	NA	100.00	100.00	91.67	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	MS4A7	chr11	+	chr11:60152696-60154189				chr11:60152695-60152696;chr11:60154189-60154190		5.51	5.26	7.32	0.00	3.57	0.00	2.39	1.05	0.00	0.00	2.59	0.00	1.99	0.28	0.00	0.00	2.07	0.00	5.00	3.67	0.00	1.75	3.92	0.00	NA	2.95	3.57	6.45	6.56	0.00	1.49	11.11	0.00	20.45	13.64	0.00	2.39	2.22	-0.17	0.737483	1.000000
K	intron_retention	VCP	chr9	-	chr9:35062136-35062213				chr9:35062135-35062136;chr9:35062213-35062214		0.71	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00	0.00	0.33	1.36	0.22	0.20	0.00	0.00	0.72	0.00	0.55	0.56	0.71	0.00	0.42	0.55	0.00	0.00	0.93	8.49	2.53	0.00	0.35	0.86	1.61	0.00	0.56	0.56	0.384477	1.000000
K	intron_retention	RBPJ	chr4	+	chr4:26432145-26432313				chr4:26432144-26432145;chr4:26432313-26432314		4.55	8.60	2.27	0.00	8.33	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	4.35	6.25	3.03	0.00	5.71	0.00	4.35	0.00	0.00	NA	0.00	5.88	4.26	3.23	6.06	NA	4.21	0.00	-4.21	0.447152	1.000000
K	jcn_only_AD	PQBP1	chrX	+	chrX:48755298-48755774;chrX:48755366-48755774	chrX:48755377-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		5.56	13.21	8.77	10.53	7.14	6.67	11.32	6.67	10.64	8.57	12.12	11.11	14.04	7.32	5.08	9.09	4.76	5.00	7.32	5.26	3.57	9.52	10.59	8.57	0.00	0.00	9.76	9.26	5.97	6.52	6.38	7.14	4.26	6.67	7.94	11.32	9.32	5.97	-3.35	0.245695	0.657607
N	alternative_donor	MRPL52	chr14	+	chr14:23299150-23299261;chr14:23299158-23299261	chr14:23299154-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		0.00	3.85	6.25	4.35	0.00	0.00	0.00	NA	10.00	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	NA	0.00	5.88	2.27	6.67	3.33	NA	19.23	5.88	3.23	10.00	0.00	9.09	3.57	9.68	0.00	7.69	5.00	0.00	0.00	4.72	4.72	0.996828	0.998383
N	jcn_only_AA	KLC1	chr14	+	chr14:104143861-104145744;chr14:104143861-104145645	chr14:104143861-104145720		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		90.00	88.98	80.41	81.03	82.86	86.42	80.82	82.11	80.22	83.33	88.42	88.41	86.67	76.72	80.00	77.67	82.26	81.82	83.56	87.50	87.07	83.02	80.22	87.76	81.91	86.14	85.29	84.38	82.57	83.56	88.41	83.04	89.89	83.04	82.83	83.61	85.12	86.82	1.70	0.951415	0.984101
N	alternative_acceptor	PSMD6-AS2	chr3	+	chr3:63995430-63997472	chr3:63995430-63995971		chr3:63995972-63997472	chr3:63997472-63997473		50.00	68.00	68.75	80.00	60.87	87.10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	75.00	65.00	90.00	75.00	66.67	76.47	55.17	55.56	66.67	72.73	73.33	57.69	68.75	48.57	60.61	80.00	65.00	65.71	64.31	60.28	-4.03	0.454912	0.760125
N	alternative_acceptor	TNS1	chr2	-	chr2:218669327-218672797	chr2:218671975-218672797		chr2:218669327-218671974	chr2:218669326-218669327		2.08	4.76	4.17	NA	6.67	0.00	1.14	0.00	0.00	0.00	0.65	0.00	1.25	0.00	0.00	0.00	0.69	1.27	NA	3.12	NA	0.00	3.92	4.08	7.69	2.70	3.45	0.00	5.26	6.25	NA	NA	NA	9.09	4.00	2.86	3.00	2.08	-0.92	0.278705	0.709013
K	intron_retention		chr14	+	chr14:23240558-23240642				chr14:23240557-23240558;chr14:23240642-23240643		4.17	1.40	2.42	0.00	1.43	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	5.77	2.42	1.56	1.13	1.96	0.00	4.17	2.61	0.00	0.00	0.00	15.49	6.11	4.87	1.39	1.89	1.14	0.70	4.17	3.47	0.390973	1.000000
N	jcn_only_AA	ARAP1	chr11	-	chr11:72423385-72423482;chr11:72423343-72423482	chr11:72423367-72423482		chr11:72423343-72423366;chr11:72423367-72423384	chr11:72423342-72423343;chr11:72423366-72423367		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.83	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.414863	0.688158
N	alternative_acceptor	PPP1CA	chr11	-	chr11:67168666-67169198;chr11:67168671-67169198	chr11:67168704-67169198		chr11:67168666-67168670;chr11:67168671-67168703	chr11:67168665-67168666;chr11:67168670-67168671		2.22	8.20	3.26	0.00	2.08	NA	1.24	2.11	2.11	1.56	1.42	0.93	0.56	0.92	1.04	0.00	0.88	0.00	3.57	3.45	2.17	0.00	1.60	2.50	0.00	1.64	3.53	0.00	1.25	0.00	3.70	2.60	0.00	2.04	1.41	1.67	0.90	2.17	1.27	0.956423	0.990505
N	alternative_acceptor		chr11	+	chr11:67058993-67059090	chr11:67058993-67059073		chr11:67059074-67059090	chr11:67059090-67059091		100.00	100.00	95.92	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	93.75	88.24	89.47	NA	96.30	NA	100.00	81.82	97.62	NA	100.00	NA	NA	100.00	90.32	NA	100.00	100.00	100.00	94.12	-5.88	0.375950	0.709013
N	alternative_acceptor	CYTH4	chr22	+	chr22:37693724-37695266	chr22:37693724-37694911		chr22:37694912-37695266	chr22:37695266-37695267		1.72	5.45	3.19	NA	0.00	NA	0.68	0.22	1.01	1.12	0.72	1.09	0.54	0.40	1.05	0.00	0.74	1.23	9.09	1.26	5.00	5.26	2.88	1.98	12.90	1.26	2.38	2.47	2.53	4.17	0.00	2.11	7.69	3.12	2.63	4.10	6.57	0.83	-5.74	0.045579	0.570243
K	alternative_last_exon	RASSF4,TMEM180	chr10	+	chr10:104231154-104232610	chr10:104231154-104231778	chr10:104232611-104232707	chr10:104231779-104232007			46.67	65.00	19.05	NA	76.47	NA	NA	15.79	NA	NA	NA	NA	26.67	NA	9.09	NA	4.76	NA	100.00	31.58	69.23	NA	36.84	NA	85.71	15.79	25.93	NA	35.71	NA	58.33	21.74	90.91	NA	29.41	NA	85.71	31.58	-54.13	0.037617	0.227559
N	jcn_only_AD	C19orf38	chr19	+	chr19:10978929-10979893;chr19:10978847-10979893	chr19:10973884-10979893		chr19:10973884-10978846;chr19:10978847-10978928	chr19:10973883-10973884;chr19:10978846-10978847		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	ARAP1	chr11	-	chr11:72412829-72413949				chr11:72412828-72412829;chr11:72413949-72413950		1.42	2.33	2.87	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.96	1.12	0.00	0.00	0.00	1.64	0.00	0.00	1.09	0.00	9.30	0.00	1.68	2.17	0.00	0.00	0.00	1.49	4.35	1.16	2.48	0.00	1.17	0.41	-0.76	0.677202	1.000000
N	jcn_only_AA	CIB1	chr15	-	chr15:90776441-90776900;chr15:90775578-90776900;chr15:90775660-90776900;chr15:90775560-90776900	chr15:90775680-90776900		chr15:90775560-90775577;chr15:90775578-90775659;chr15:90775660-90775679;chr15:90775680-90776440	chr15:90775559-90775560;chr15:90775577-90775578;chr15:90775659-90775660;chr15:90775679-90775680		4.83	1.77	7.59	0.00	2.38	1.45	0.00	0.96	1.54	0.00	0.00	0.00	0.62	0.00	0.97	0.84	0.00	0.00	2.78	0.00	1.46	2.90	4.14	4.92	0.00	2.44	5.06	1.28	2.56	1.27	4.40	4.14	4.46	5.48	3.85	5.98	1.20	1.70	0.50	0.669301	0.853918
N	alternative_acceptor	TMEM255B	chr13	+	chr13:114498211-114502311	chr13:114498211-114498292		chr13:114498293-114502311	chr13:114502311-114502312		0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	7.14	0.00	0.00	0.00	0.391002	0.709013
K	intron_retention	FPGS	chr9	+	chr9:130570985-130571078				chr9:130570984-130570985;chr9:130571078-130571079		2.08	0.00	3.75	2.33	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	5.00	0.00	8.11	8.70	6.02	0.00	0.00	5.88	0.00	0.00	5.36	7.41	6.82	NA	0.00	0.00	3.51	0.00	1.04	1.04	0.256782	1.000000
N	alternative_acceptor	TMEM259	chr19	-	chr19:1011649-1011739;chr19:1011612-1011739	chr19:1011663-1011739		chr19:1011612-1011648;chr19:1011649-1011662	chr19:1011611-1011612;chr19:1011648-1011649		42.00	70.27	49.21	50.00	50.00	NA	59.52	50.00	48.94	42.55	43.86	42.42	50.91	51.43	48.21	60.00	46.03	46.43	53.85	43.59	48.00	54.55	55.10	54.17	58.33	46.88	49.23	54.29	42.55	45.45	31.03	47.54	44.44	54.55	51.11	50.94	56.09	45.23	-10.86	0.028120	0.546324
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145013517;chr8:145012861-145016559;chr8:145012861-145047570;chr8:145012861-145017946;chr8:145012861-145024351	chr8:145012861-145027893	chr8:145049345-145049543;chr8:145013518-145013758;chr8:145016560-145016692;chr8:145047571-145047697;chr8:145017947-145018126;chr8:145024352-145025044	chr8:145027894-145028088			0.00	0.00	3.85	NA	NA	NA	6.90	0.00	5.88	0.00	4.81	0.00	1.96	0.00	5.56	0.00	0.59	0.00	7.69	0.00	NA	NA	3.45	0.00	6.12	0.00	7.14	NA	5.56	NA	NA	NA	7.14	0.00	0.00	0.00	6.51	0.00	-6.51	0.012453	0.066113
N	alternative_acceptor	MFSD10	chr4	-	chr4:2932604-2932787	chr4:2932681-2932787		chr4:2932604-2932680	chr4:2932603-2932604		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	95.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.686976	0.881898
N	alternative_donor		chr7	-	chr7:45002724-45003674;chr7:45002724-45003638	chr7:45002724-45003647		chr7:45003639-45003647;chr7:45003648-45003674	chr7:45003647-45003648;chr7:45003674-45003675		98.65	100.00	98.21	100.00	100.00	99.78	NA	99.25	99.04	100.00	NA	93.33	100.00	99.22	97.57	98.08	100.00	92.00	98.63	98.54	99.37	96.15	100.00	95.00	100.00	98.42	98.95	96.15	98.11	97.28	98.34	98.80	100.00	100.00	100.00	97.01	100.00	98.59	-1.41	0.018372	0.264981
N	jcn_only_AA	DROSHA	chr5	-	chr5:31409440-31410852	chr5:31409850-31410852		chr5:31409440-31409849	chr5:31409439-31409440		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	5.26	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	CUL1,TTYH3	chr7	+	chr7:2671913-2685405;chr7:2671913-2686486	chr7:2671913-2673737		chr7:2673738-2685405;chr7:2685406-2686486	chr7:2685405-2685406;chr7:2686486-2686487		3.77	10.34	3.30	NA	NA	NA	0.51	1.14	1.19	0.36	0.63	0.00	1.04	0.75	2.38	0.43	0.78	0.00	NA	3.85	NA	4.00	3.09	2.70	28.57	3.49	1.85	1.72	2.74	0.00	3.45	2.50	15.38	4.29	4.13	1.63	10.34	3.47	-6.87	0.179770	0.660713
N	alternative_acceptor	PRR14	chr16	+	chr16:30666742-30666834;chr16:30666742-30666822	chr16:30666742-30666848		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		34.62	48.28	18.75	NA	0.00	20.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	33.33	32.00	16.67	16.67	0.00	NA	0.00	21.43	16.00	0.00	13.64	8.33	32.26	27.27	20.00	30.00	12.50	21.05	20.00	32.00	12.00	0.752615	0.908526
K	intron_retention	ACAP1	chr17	+	chr17:7252487-7253263				chr17:7252486-7252487;chr17:7253263-7253264		0.00	12.50	33.33	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	5.00	NA	NA	NA	NA	6.67	9.09	8.33	NA	NA	NA	5.26	2.78	15.38	NA	NA	NA	0.00	0.00	6.67	NA	NA	NA	6.67	1.39	-5.28	0.379113	1.000000
K	jcn_only_AA	RP11-321N4.5,SYNCRIP	chr6	-	chr6:86322639-86324698	chr6:86322642-86324698		chr6:86322639-86322641	chr6:86322638-86322639		84.00	67.69	83.72	84.09	80.85	82.69	86.76	84.00	88.24	84.21	81.58	84.44	86.90	87.10	86.11	84.62	80.25	90.00	76.92	86.96	83.33	83.05	83.33	77.78	82.50	82.35	90.24	81.03	85.94	81.54	84.21	75.86	75.71	77.36	72.22	75.00	79.71	84.10	4.39	0.141408	0.663989
K	alternative_donor	PLEC	chr8	-	chr8:145009098-145009190	chr8:145009098-145009178		chr8:145009179-145009190	chr8:145009190-145009191		42.11	44.00	54.55	NA	NA	NA	50.00	53.57	58.82	64.10	48.39	41.18	53.75	52.94	70.00	57.41	54.35	47.37	NA	33.33	NA	NA	53.57	46.15	50.00	61.54	50.00	NA	40.91	NA	NA	NA	45.45	71.43	38.24	42.86	50.00	52.94	2.94	0.991586	0.997584
K	jcn_only_AA	ARRDC1	chr9	+	chr9:140508222-140508432;chr9:140508222-140508591	chr9:140508222-140508483		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		94.00	96.47	93.02	NA	100.00	NA	100.00	91.30	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	NA	92.31	100.00	89.47	100.00	89.80	100.00	100.00	97.87	90.00	88.24	97.78	100.00	95.45	93.75	100.00	100.00	100.00	100.00	100.00	96.41	-3.59	0.266425	0.663989
K	intron_retention	PPP4C	chr16	+	chr16:30087422-30087635				chr16:30087421-30087422;chr16:30087635-30087636		13.64	13.33	15.15	NA	14.29	NA	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	NA	8.70	14.81	19.05	14.29	13.33	NA	13.04	17.39	5.26	4.17	5.26	24.14	24.32	35.71	15.38	6.67	7.69	6.67	10.87	4.20	0.994202	1.000000
K	coord_cassette	STAT6	chr12	-	chr12:57501098-57504911	chr12:57501098-57501387;chr12:57501527-57501945;chr12:57502083-57504911		chr12:57501388-57501526;chr12:57501946-57502082			97.37	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	93.75	100.00	93.94	100.00	100.00	99.14	97.56	96.36	100.00	NA	100.00	NA	100.00	100.00	93.33	100.00	92.98	100.00	100.00	100.00	NA	NA	100.00	NA	95.83	100.00	97.62	100.00	100.00	0.00	0.231868	0.643829
K	intron_retention	GBA2	chr9	-	chr9:35737445-35737744				chr9:35737444-35737445;chr9:35737744-35737745		50.00	36.36	60.98	26.67	27.50	NA	12.50	17.65	6.67	30.00	27.78	NA	35.29	6.25	22.22	10.00	22.73	NA	27.27	43.48	27.59	36.36	45.00	44.44	25.00	50.00	46.88	41.18	37.04	38.89	61.11	54.05	27.27	42.42	39.47	46.43	27.27	46.74	19.47	0.688533	1.000000
K	jcn_only_AA	POLR2E	chr19	-	chr19:1088720-1089470;chr19:1086988-1089470	chr19:1088681-1089470		chr19:1086988-1088680;chr19:1088681-1088719	chr19:1086987-1086988;chr19:1088680-1088681		0.00	5.90	4.42	5.29	7.20	4.86	5.61	5.36	2.96	4.04	3.27	4.64	4.00	3.03	2.33	5.26	4.05	2.94	7.14	0.00	3.67	5.16	7.07	4.39	8.76	0.00	3.42	0.00	6.47	5.03	9.09	4.47	6.11	5.13	4.08	4.72	6.01	1.51	-4.49	0.084989	0.663989
K	intron_retention		chr22	-	chr22:50686722-50686794				chr22:50686721-50686722;chr22:50686794-50686795		31.58	14.63	33.33	NA	11.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	36.36	16.67	12.00	NA	17.24	NA	0.00	14.29	16.67	NA	15.00	0.00	50.00	30.77	45.00	6.67	28.57	17.39	7.32	24.12	16.81	0.426654	1.000000
N	alternative_acceptor	DYNLL1	chr12	+	chr12:120934357-120935922;chr12:120934357-120935852;chr12:120934357-120935637	chr12:120934357-120935875		chr12:120935638-120935852;chr12:120935853-120935875;chr12:120935876-120935922	chr12:120935852-120935853;chr12:120935875-120935876;chr12:120935922-120935923		97.58	97.63	97.11	97.66	97.87	96.24	100.00	98.98	99.67	99.55	99.10	100.00	99.54	100.00	100.00	99.74	99.62	100.00	92.99	91.41	89.56	97.51	98.12	96.11	98.55	98.87	97.84	98.69	98.62	98.03	88.51	90.12	89.81	98.01	97.92	97.31	98.09	98.22	0.13	0.840767	0.943575
K	intron_retention	SLC25A3	chr12	+	chr12:98987519-98987752				chr12:98987518-98987519;chr12:98987752-98987753		4.41	9.09	4.90	0.00	6.38	NA	3.74	8.20	4.76	4.25	3.83	2.63	2.53	3.33	4.55	4.05	2.13	0.60	0.00	5.66	3.12	8.97	6.47	3.41	NA	16.67	10.14	8.33	4.95	8.82	13.16	3.66	0.00	6.93	6.19	5.61	2.53	6.93	4.40	0.297098	1.000000
K	cassette	ZNF385A	chr12	-	chr12:54764881-54767756	chr12:54764881-54765256;chr12:54765427-54767756		chr12:54765257-54765426			80.77	80.65	69.70	NA	59.38	NA	95.65	89.16	97.30	89.58	88.57	86.96	92.75	92.65	89.66	83.33	90.20	100.00	NA	79.49	81.82	56.52	64.47	66.67	100.00	85.71	79.59	80.00	83.93	91.30	76.92	66.07	80.00	74.00	78.85	77.05	92.75	83.24	-9.51	0.270180	0.709176
K	intron_retention		chr11	+	chr11:47256224-47256307				chr11:47256223-47256224;chr11:47256307-47256308		43.48	33.33	34.09	NA	42.86	61.54	3.23	0.00	0.00	0.00	0.00	NA	0.00	5.00	0.00	5.00	0.00	0.00	65.38	42.86	48.15	36.84	40.74	11.11	50.00	30.43	39.47	8.33	30.00	0.00	51.52	29.09	63.64	27.27	24.14	25.81	41.66	36.64	-5.02	0.895431	1.000000
N	alternative_acceptor	RMDN1	chr8	-	chr8:87487826-87489522;chr8:87487183-87489522	chr8:87487144-87489522		chr8:87487144-87487182;chr8:87487183-87487825	chr8:87487143-87487144;chr8:87487182-87487183		11.11	9.76	21.05	16.67	12.12	22.22	31.03	15.38	19.05	22.73	24.44	22.22	12.50	18.18	20.00	18.18	23.68	33.33	20.93	0.00	14.29	NA	4.55	NA	6.52	17.65	19.35	20.00	16.67	0.00	0.00	17.39	9.68	16.67	9.09	12.50	11.13	13.25	2.12	0.380380	0.709013
K	alternative_acceptor	SYNGR2	chr17	+	chr17:76167136-76167819	chr17:76167136-76167590		chr17:76167591-76167819	chr17:76167819-76167820		74.10	75.00	76.02	65.00	70.00	NA	85.16	86.93	86.61	69.57	76.68	71.76	86.84	89.00	83.56	78.23	74.87	72.84	70.00	76.03	76.84	62.71	68.88	67.57	74.07	85.71	75.56	70.21	75.59	75.51	79.17	75.62	62.50	73.56	67.40	72.39	74.53	82.44	7.91	0.203489	0.668672
K	intron_retention	MBD1	chr18	-	chr18:47797911-47799046				chr18:47797910-47797911;chr18:47799046-47799047		31.25	21.43	36.84	20.00	11.76	NA	12.00	5.26	3.85	14.29	16.67	15.38	12.50	0.00	11.11	3.70	20.00	NA	8.33	30.00	18.75	28.57	29.63	33.33	NA	17.86	18.42	NA	21.05	9.09	26.09	30.95	20.00	25.00	20.00	32.26	12.50	21.98	9.48	0.839521	1.000000
N	alternative_donor	MRFAP1	chr4	+	chr4:6642986-6643456	chr4:6643338-6643456		chr4:6642986-6643337	chr4:6642985-6642986		2.31	1.89	1.83	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.53	0.00	0.00	0.00	0.93	0.00	2.22	1.49	1.31	0.69	1.30	6.25	0.99	1.24	0.56	0.00	1.00	3.95	3.04	2.99	0.53	0.95	0.95	0.94	1.60	0.66	0.876571	0.969355
K	intron_retention	PSMB4	chr1	+	chr1:151373832-151374017				chr1:151373831-151373832;chr1:151374017-151374018		5.42	2.31	4.08	2.86	2.56	1.80	0.00	0.61	0.55	0.31	0.31	0.73	0.00	1.12	1.15	0.60	0.59	0.00	2.86	3.97	3.15	4.91	2.83	4.00	2.56	4.83	2.96	2.29	2.29	3.82	9.00	6.88	5.20	3.67	3.15	3.29	2.44	4.40	1.97	0.401555	1.000000
K	intron_retention	RBBP7	chrX	-	chrX:16870999-16871804				chrX:16870998-16870999;chrX:16871804-16871805		11.76	10.00	18.75	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.96	0.00	2.78	0.00	0.00	0.00	NA	16.67	0.00	0.00	4.76	0.00	0.00	12.50	6.90	0.00	4.44	0.00	NA	9.09	NA	6.90	0.00	0.00	0.48	11.76	11.28	0.537348	1.000000
K	cassette	ESRRA	chr11	+	chr11:64073209-64081422	chr11:64073209-64074639;chr11:64074977-64081422		chr11:64074640-64074976			100.00	100.00	95.24	NA	100.00	NA	94.59	100.00	100.00	100.00	100.00	NA	97.67	100.00	93.75	100.00	96.55	NA	NA	100.00	100.00	92.31	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	98.84	100.00	1.16	0.228329	0.709176
K	intron_retention	HDAC7	chr12	-	chr12:48179255-48179534				chr12:48179254-48179255;chr12:48179534-48179535		2.22	39.39	5.26	NA	33.33	NA	3.45	0.00	0.00	0.00	0.00	NA	3.12	0.00	0.00	0.00	0.00	0.00	30.77	0.00	13.33	NA	12.50	0.00	53.85	0.00	3.17	0.00	25.00	2.17	0.00	2.27	30.77	0.00	18.75	0.00	30.77	0.00	-30.77	0.098339	1.000000
K	cassette	CTC-273B12.7,CYTH2	chr19	+	chr19:48973758-48975581	chr19:48973758-48973859;chr19:48973927-48975581		chr19:48973860-48973926			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	96.77	100.00	100.00	94.59	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	PLCB3	chr11	+	chr11:64031070-64031162				chr11:64031069-64031070;chr11:64031162-64031163		2.50	0.00	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	NA	7.69	6.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_last_exon	CASC3	chr17	+	chr17:74729460-74732271	chr17:74729460-74729602	chr17:74732272-74733173	chr17:74729603-74730018			63.16	95.97	70.67	81.40	90.22	90.70	62.71	52.38	58.97	80.00	52.78	20.00	47.89	51.85	51.11	21.28	41.67	13.51	97.06	63.64	92.75	46.15	79.31	38.46	97.62	53.57	74.19	55.56	77.03	73.53	62.16	74.14	96.46	46.88	65.28	28.33	96.22	57.86	-38.35	0.036693	0.227559
K	jcn_only_AD	CLOCK,TNIP2	chr4	-	chr4:2747263-2749381	chr4:2747263-2747755		chr4:2747756-2749381	chr4:2749381-2749382		0.00	0.00	3.17	2.63	9.09	5.56	0.00	7.06	0.00	20.24	6.15	24.68	0.00	6.85	0.00	8.89	6.52	13.89	0.00	0.00	0.00	4.71	7.14	9.65	NA	12.37	4.23	13.92	6.52	12.86	0.00	4.00	0.00	6.17	4.23	4.55	0.00	3.42	3.42	0.093569	0.639657
K	intron_retention		chr22	+	chr22:37707569-37708060				chr22:37707568-37707569;chr22:37708060-37708061		7.51	10.74	9.23	0.00	11.32	NA	2.50	1.72	1.43	2.14	1.12	0.69	3.10	1.27	3.88	3.12	3.47	0.81	13.64	6.05	7.69	9.62	7.18	6.21	16.33	5.23	9.64	6.01	5.73	5.23	3.57	8.21	9.38	6.90	7.44	7.14	10.06	4.40	-5.66	0.184664	1.000000
K	intron_retention	ATG9A	chr2	-	chr2:220085615-220085801				chr2:220085614-220085615;chr2:220085801-220085802		4.00	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.35	NA	0.00	NA	0.00	0.00	2.27	0.00	0.00	NA	5.88	2.56	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	BMS1P20,SGSM3	chr22	+	chr22:40804702-40804797	chr22:40804702-40804777		chr22:40804778-40804797	chr22:40804797-40804798		25.81	29.23	18.87	18.18	18.33	16.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	19.48	29.17	10.34	25.00	19.57	17.65	15.73	0.00	18.87	10.53	18.00	11.54	0.00	13.64	21.95	14.29	22.22	0.00	17.61	0.00	-17.61	0.694611	0.865545
K	intron_retention	ABCD4	chr14	-	chr14:74757203-74758989				chr14:74757202-74757203;chr14:74758989-74758990		0.00	14.29	8.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	NA	7.69	NA	13.33	7.41	6.45	NA	4.55	NA	0.00	4.17	0.00	5.26	5.00	0.00	0.00	0.00	0.00	0.969474	1.000000
N	alternative_acceptor		chr2	+	chr2:241508532-241511899	chr2:241508532-241511839		chr2:241511840-241511899	chr2:241511899-241511900		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.40	100.00	100.00	100.00	100.00	100.00	96.39	100.00	NA	91.67	NA	NA	93.55	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AD	PCMT1	chr6	+	chr6:150123561-150131751;chr6:150123506-150131751;chr6:150131260-150131751	chr6:150123553-150131751		chr6:150123506-150123552;chr6:150123553-150123560;chr6:150123561-150131259	chr6:150123505-150123506;chr6:150123552-150123553;chr6:150123560-150123561		32.20	30.36	31.03	41.03	33.87	47.87	42.50	46.67	45.24	51.02	52.38	52.63	49.04	53.26	57.78	56.45	65.71	50.00	37.11	45.59	40.79	42.75	49.22	51.72	30.51	54.78	40.54	41.54	50.94	51.90	37.61	41.44	35.77	48.25	44.68	46.20	36.44	46.13	9.69	0.139818	0.657607
K	intron_retention	MAT2A	chr2	+	chr2:85770158-85770792				chr2:85770157-85770158;chr2:85770792-85770793		47.89	13.04	40.00	NA	21.05	NA	11.11	5.13	4.35	4.26	14.95	5.71	18.31	6.25	16.07	13.95	15.46	7.14	NA	40.74	18.18	40.43	44.09	34.15	NA	47.92	53.73	17.95	27.27	15.38	37.14	46.67	9.09	37.93	49.37	42.00	12.07	38.94	26.86	0.186069	1.000000
K	intron_retention		chr1	+	chr1:154247737-154247868				chr1:154247736-154247737;chr1:154247868-154247869		3.08	8.33	3.79	3.92	3.23	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.94	4.40	2.72	3.45	2.59	6.00	6.00	5.83	6.56	0.00	1.01	5.63	6.61	7.33	5.36	4.23	1.83	2.53	5.15	3.74	-1.41	0.524016	1.000000
N	alternative_last_exon	MBD1	chr18	-	chr18:47796286-47799046,chr18:47797931-47799046,chr18:47796055-47799046;chr18:47788590-47799046;chr18:47796182-47799046,chr18:47796189-47799046,chr18:47797911-47799046	chr18:47794034-47799046	chr18:47788360-47788589;chr18:47795927-47796181	chr18:47793252-47794033			10.34	33.33	8.47	13.33	23.81	40.00	6.45	10.71	5.26	6.90	5.88	5.26	6.06	5.26	2.63	5.13	6.67	11.11	36.36	4.76	14.63	6.45	5.26	3.33	30.43	7.41	8.20	8.33	10.26	10.53	11.11	9.78	31.43	6.38	8.33	7.46	30.93	8.88	-22.05	0.038527	0.227559
K	intron_retention	NEDD8-MDP1	chr14	-	chr14:24684869-24684942				chr14:24684868-24684869;chr14:24684942-24684943		30.77	3.03	28.00	NA	30.43	10.00	0.00	0.00	3.70	NA	21.43	NA	12.50	0.00	7.14	0.00	8.33	NA	21.43	23.08	15.15	NA	21.05	NA	0.00	14.29	23.33	NA	20.00	NA	14.29	17.86	11.54	NA	16.67	25.00	7.28	14.29	7.00	0.809890	1.000000
N	cassette	HGS	chr17	+	chr17:79655858-79657703	chr17:79655858-79657211;chr17:79657265-79657703		chr17:79657212-79657264			97.56	100.00	85.29	NA	76.92	NA	97.50	100.00	100.00	100.00	100.00	100.00	97.73	100.00	98.44	100.00	100.00	100.00	NA	95.00	84.62	100.00	93.94	92.31	92.86	100.00	94.00	96.67	100.00	100.00	80.00	89.39	100.00	91.94	90.57	94.37	97.73	98.78	1.05	0.546435	0.816539
K	intron_retention	CLSTN1	chr1	-	chr1:9790764-9791263				chr1:9790763-9790764;chr1:9791263-9791264		0.00	5.66	1.72	NA	0.00	NA	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	1.89	0.00	5.00	3.92	1.43	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.939174	1.000000
N	alternative_donor		chr19	-	chr19:17514136-17514507;chr19:17514136-17514484	chr19:17514136-17514488		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		99.74	100.00	100.00	100.00	100.00	99.80	63.97	72.06	71.53	69.57	65.96	69.14	100.00	100.00	100.00	100.00	100.00	100.00	99.82	99.87	100.00	100.00	100.00	99.46	99.84	100.00	99.68	99.58	100.00	99.82	99.90	99.80	99.52	99.55	100.00	99.77	99.83	99.89	0.06	0.856820	0.960074
K	intron_retention	TRADD	chr16	-	chr16:67190572-67193740				chr16:67190571-67190572;chr16:67193740-67193741		7.69	0.00	12.00	NA	NA	0.00	0.00	1.45	1.54	0.00	0.00	0.00	0.00	1.28	1.89	4.17	0.00	0.00	0.00	7.14	3.03	6.67	0.00	21.74	NA	9.52	11.76	3.85	0.00	8.75	6.98	6.67	NA	NA	NA	19.64	0.00	7.06	7.06	0.208077	1.000000
K	cassette	UTP18	chr17	+	chr17:49362730-49365389	chr17:49362730-49363843;chr17:49363914-49365389		chr17:49363844-49363913			3.70	0.00	3.70	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.212053	0.709176
N	jcn_only_AA	ITGB1BP1	chr2	-	chr2:9547714-9548241;chr2:9547035-9548241	chr2:9547728-9548241		chr2:9547035-9547713;chr2:9547714-9547727	chr2:9547034-9547035;chr2:9547713-9547714		89.74	81.25	83.33	82.81	87.34	64.15	71.43	85.71	80.77	77.42	78.01	73.49	86.54	93.10	90.32	82.89	87.95	85.71	85.45	84.38	70.53	85.71	83.56	81.58	68.97	82.61	95.24	88.10	86.44	80.43	80.00	89.29	74.70	86.30	88.16	79.10	77.97	85.04	7.07	0.058313	0.663989
N	cassette	EWSR1	chr22	+	chr22:29692359-29694722	chr22:29692359-29693816;chr22:29693940-29694722		chr22:29693817-29693939			95.41	97.61	98.68	97.73	98.09	96.57	100.00	96.30	96.83	97.37	95.18	97.70	100.00	100.00	97.14	96.72	97.85	94.51	97.99	96.92	97.80	97.12	99.07	98.31	100.00	96.93	97.61	97.48	98.63	98.05	97.14	98.24	95.68	98.28	98.65	98.05	99.00	96.93	-2.07	0.168163	0.709176
K	intron_retention	EWSR1	chr22	+	chr22:29687589-29688125				chr22:29687588-29687589;chr22:29688125-29688126		9.52	4.92	14.07	3.85	3.37	0.00	1.59	2.08	0.00	1.14	0.90	1.11	1.03	1.15	3.80	1.68	0.00	0.93	8.70	8.40	4.35	11.76	9.72	9.59	0.00	7.96	7.35	4.69	6.20	4.86	7.96	14.89	2.78	11.85	12.07	13.94	2.19	7.96	5.78	0.839641	1.000000
K	intron_retention	USP39	chr2	+	chr2:85872207-85875052				chr2:85872206-85872207;chr2:85875052-85875053		0.00	0.00	3.92	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	4.55	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	2.38	6.25	0.00	0.00	0.00	0.721845	1.000000
N	cassette	PLD3	chr19	+	chr19:40854632-40871624;chr19:40854632-40872325;chr19:40854676-40871624;chr19:40854676-40872325;chr19:40854676-40872285;chr19:40854676-40872290	chr19:40854632-40871459,chr19:40854676-40871459;chr19:40871493-40872325,chr19:40871493-40872290,chr19:40871493-40872285,chr19:40871493-40871624		chr19:40871460-40871492			31.08	29.63	30.77	NA	37.93	NA	64.38	63.16	66.18	70.45	65.52	67.35	69.23	68.75	66.67	70.83	69.09	65.71	36.84	32.84	29.41	40.74	42.21	43.80	40.74	48.21	46.97	60.87	68.00	47.73	27.08	35.87	24.00	34.43	47.89	43.55	38.79	40.53	1.73	0.922083	0.980041
N	jcn_only_AA	PSME4	chr2	-	chr2:54092290-54093221	chr2:54092711-54093221		chr2:54092290-54092710	chr2:54092289-54092290		100.00	95.65	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.74	100.00	98.15	100.00	100.00	100.00	0.00	0.215724	0.663989
K	intron_retention	SUN2	chr22	-	chr22:39137056-39137498				chr22:39137055-39137056;chr22:39137498-39137499		10.42	12.50	4.65	NA	NA	90.91	0.00	3.45	4.29	2.56	0.00	9.09	0.72	4.55	6.85	3.85	0.00	8.33	NA	10.39	10.00	4.17	2.08	32.50	13.33	21.05	9.43	24.14	3.85	71.88	30.77	9.84	7.69	9.38	5.56	36.21	7.69	10.41	2.72	0.807834	1.000000
N	cassette	WDR81	chr17	+	chr17:1636126-1638865	chr17:1636126-1636820;chr17:1637511-1638865		chr17:1636821-1637510			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	92.86	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	STX4	chr16	+	chr16:31045436-31045546;chr16:31045436-31045493	chr16:31045436-31045524		chr16:31045494-31045524;chr16:31045525-31045546	chr16:31045524-31045525;chr16:31045546-31045547		8.70	6.12	10.17	13.04	9.25	24.62	6.14	5.56	9.09	10.38	11.29	8.97	7.87	7.69	16.33	9.84	6.62	10.48	6.35	6.19	9.73	8.38	10.03	9.58	0.00	9.60	8.14	8.76	7.87	10.19	8.46	11.50	11.84	10.03	9.38	9.72	6.24	8.08	1.83	0.462044	0.723425
N	jcn_only_AA	TDP2	chr6	-	chr6:24651320-24653210;chr6:24651318-24653210;chr6:24651143-24653210	chr6:24651298-24653210		chr6:24651143-24651297;chr6:24651298-24651317;chr6:24651318-24651319	chr6:24651142-24651143;chr6:24651297-24651298;chr6:24651317-24651318		98.93	100.00	98.65	100.00	100.00	94.12	100.00	100.00	100.00	99.41	99.52	100.00	100.00	99.21	100.00	99.03	98.82	97.40	100.00	99.15	100.00	98.84	99.62	99.38	100.00	100.00	99.19	98.26	99.58	98.59	99.17	100.00	100.00	99.64	99.56	100.00	100.00	99.19	-0.81	0.027076	0.636137
N	alternative_donor		chr22	-	chr22:21064286-21064976;chr22:21064286-21064889	chr22:21064286-21064986		chr22:21064890-21064976;chr22:21064977-21064986	chr22:21064976-21064977;chr22:21064986-21064987		92.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	96.63	100.00	100.00	95.00	97.73	93.33	97.26	100.00	94.87	93.62	100.00	100.00	98.00	100.00	100.00	97.50	-2.50	0.112442	0.520337
K	jcn_only_AA	JOSD2	chr19	-	chr19:51013703-51014373	chr19:51013706-51014373		chr19:51013703-51013705	chr19:51013702-51013703		83.33	81.82	74.29	82.61	82.50	83.78	76.32	83.33	89.47	100.00	91.43	76.47	89.13	86.54	94.12	93.55	81.58	90.48	83.64	75.51	87.84	78.26	71.43	68.75	70.91	75.86	85.29	91.67	78.05	82.35	77.19	81.82	70.21	78.57	75.00	85.00	79.07	80.26	1.19	0.664669	0.851571
N	cassette	RNF19B	chr1	-	chr1:33402911-33407852;chr1:33402861-33405203;chr1:33402861-33409619;chr1:33402861-33407852;chr1:33402911-33405203	chr1:33402911-33403997,chr1:33402861-33403997;chr1:33404130-33409619,chr1:33404130-33405203,chr1:33404130-33407852		chr1:33403998-33404129			96.67	100.00	97.78	96.72	95.83	96.43	100.00	96.39	95.85	97.42	100.00	96.94	96.30	96.76	96.57	96.96	97.65	95.99	100.00	96.24	95.93	97.87	100.00	96.99	NA	97.04	95.24	97.42	100.00	97.39	95.90	93.55	100.00	98.48	97.40	96.91	100.00	96.53	-3.47	0.018607	0.373030
K	cassette	ITGAX	chr16	+	chr16:31374696-31382404	chr16:31374696-31381301;chr16:31381420-31382404		chr16:31381302-31381419			6.25	9.09	10.00	7.14	4.35	NA	1.70	2.22	1.39	4.90	6.60	3.57	2.76	7.02	6.67	3.17	5.41	0.00	7.14	6.15	7.69	8.70	5.94	7.14	0.00	9.86	5.66	6.25	9.41	3.45	9.68	3.92	0.00	11.30	9.09	6.77	2.23	6.63	4.40	0.110488	0.708559
K	intron_retention		chr15	+	chr15:64422521-64423885				chr15:64422520-64422521;chr15:64423885-64423886		4.72	0.00	8.47	0.00	0.88	0.00	0.00	0.67	0.00	0.00	0.83	0.00	0.63	1.60	3.96	0.00	0.96	0.00	0.00	1.92	0.00	0.00	2.67	5.00	0.00	4.35	1.89	3.95	2.45	2.67	4.05	3.79	2.17	5.05	3.70	5.77	0.00	2.98	2.98	0.110760	1.000000
K	intron_retention	PPP6R2	chr22	+	chr22:50879456-50882294				chr22:50879455-50879456;chr22:50882294-50882295		15.56	16.84	14.55	14.63	10.53	18.60	0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	4.76	0.00	NA	NA	6.59	11.36	8.64	19.35	15.69	23.81	14.29	23.33	15.79	19.23	6.25	18.75	10.34	13.56	8.57	35.00	14.29	24.14	7.58	10.85	3.27	0.861066	1.000000
K	intron_retention	KHSRP	chr19	-	chr19:6413750-6415151				chr19:6413749-6413750;chr19:6415151-6415152		100.00	83.93	90.70	90.00	84.78	83.72	97.78	NA	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	84.78	100.00	100.00	100.00	100.00	95.45	91.43	100.00	100.00	100.00	100.00	88.89	90.00	100.00	90.57	85.71	100.00	100.00	91.00	100.00	9.00	0.297735	1.000000
N	alternative_acceptor	CALM3	chr19	+	chr19:47109115-47111461;chr19:47109115-47109372;chr19:47109115-47111455	chr19:47109115-47111453		chr19:47109373-47111453;chr19:47111454-47111455;chr19:47111456-47111461	chr19:47111453-47111454;chr19:47111455-47111456;chr19:47111461-47111462		94.37	99.09	78.76	95.00	99.40	89.83	99.59	100.00	93.75	100.00	100.00	90.73	91.96	95.74	93.48	100.00	99.40	100.00	92.39	92.54	85.22	98.57	95.24	97.73	98.51	86.59	86.27	93.42	98.83	90.08	93.67	81.61	89.76	97.30	97.67	89.43	95.45	94.02	-1.43	0.590152	0.844088
N	cassette	EMP3	chr19	+	chr19:48830180-48832608;chr19:48828868-48832608	chr19:48828868-48830777,chr19:48830180-48830777;chr19:48830819-48832608		chr19:48830778-48830818			98.48	96.43	98.08	97.37	97.30	96.17	98.91	99.66	100.00	99.14	98.23	98.95	99.23	100.00	100.00	99.08	99.29	99.39	95.93	98.87	97.37	97.95	98.41	98.95	91.22	98.29	96.50	97.65	99.16	98.15	98.48	94.36	90.38	98.32	98.61	98.47	96.18	98.68	2.50	0.065600	0.621473
N	cassette	CLK1	chr2	-	chr2:201721709-201722695	chr2:201721709-201722440;chr2:201722608-201722695		chr2:201722441-201722607			98.91	100.00	99.14	100.00	100.00	NA	100.00	100.00	100.00	92.31	100.00	100.00	100.00	93.94	100.00	90.32	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.18	100.00	95.45	100.00	99.22	100.00	98.00	100.00	98.18	100.00	100.00	0.00	0.282493	0.709176
K	alternative_first_exon	TNIP1	chr5	-	chr5:150443309-150472998;chr5:150443309-150444520;chr5:150443309-150466645	chr5:150443309-150460440	chr5:150444521-150444692;chr5:150466646-150466719	chr5:150460441-150460645			11.92	7.69	6.29	5.66	2.94	8.82	11.54	3.98	4.27	7.15	8.86	6.22	9.52	2.38	4.99	7.82	9.42	5.45	NA	5.61	9.01	6.20	9.47	4.18	0.00	5.20	6.14	4.44	8.06	5.20	8.53	8.98	30.00	6.90	8.13	4.77	9.52	5.41	-4.11	0.340114	0.536334
N	jcn_only_AD	AC010642.1,ERVK3-1	chr19	+	chr19:58823770-58826113	chr19:58823829-58826113		chr19:58823770-58823828	chr19:58823769-58823770		100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	97.96	100.00	92.59	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	96.88	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	SLC25A28	chr10	.	chr10:101371124-101372299				chr10:101371123-101371124;chr10:101372299-101372300		70.45	54.76	67.70	52.63	58.62	45.00	5.26	6.71	5.88	9.23	9.68	5.21	0.00	5.36	6.47	7.53	5.41	5.08	58.33	65.36	51.26	61.22	58.97	65.27	8.33	53.43	58.54	38.05	40.00	33.92	60.66	59.30	58.82	53.09	56.00	58.50	31.54	57.05	25.50	0.242082	1.000000
N	alternative_acceptor	PPP1R12C	chr19	-	chr19:55604431-55604520	chr19:55604445-55604520		chr19:55604431-55604444	chr19:55604430-55604431		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.55	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	0.00	0.847577	0.946367
K	intron_retention	PHYKPL	chr5	-	chr5:177635917-177638890				chr5:177635916-177635917;chr5:177638890-177638891		6.45	8.82	2.70	0.00	3.70	7.14	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	NA	8.57	9.52	0.00	NA	6.67	8.33	0.00	3.45	2.86	0.00	3.12	5.13	3.70	8.82	0.00	7.14	6.67	10.00	2.94	3.58	0.64	0.892962	1.000000
N	jcn_only_AD	RBCK1	chr20	+	chr20:401676-402770;chr20:401798-402770	chr20:401651-402770		chr20:401651-401675;chr20:401676-401797	chr20:401650-401651;chr20:401675-401676		0.00	0.00	5.26	NA	NA	NA	0.00	0.00	1.61	0.00	0.00	3.33	0.00	3.33	5.41	0.00	0.00	0.00	NA	7.14	0.00	NA	0.00	8.33	0.00	1.35	0.00	10.00	10.00	4.88	6.12	5.88	0.00	0.00	5.88	5.56	0.00	2.34	2.34	0.063865	0.574002
K	intron_retention	ADM	chr11	+	chr11:10326777-10327226				chr11:10326776-10326777;chr11:10327226-10327227		3.72	0.00	4.91	1.40	0.00	4.00	0.00	0.31	0.16	0.00	0.00	0.12	0.00	0.19	0.16	0.27	0.00	0.51	NA	3.27	4.03	3.55	3.17	2.21	NA	2.31	1.99	1.08	3.17	1.83	5.38	5.40	4.76	1.40	2.63	2.39	0.00	2.79	2.79	0.845959	1.000000
K	intron_retention		chr19	-	chr19:10225806-10226154				chr19:10225805-10225806;chr19:10226154-10226155		7.56	2.88	2.88	2.78	9.30	1.05	14.41	10.00	2.33	1.74	21.05	0.00	9.22	8.77	0.00	3.36	12.21	0.00	9.21	10.61	4.14	7.35	23.77	3.70	4.28	14.13	5.23	5.94	24.36	2.68	8.08	3.25	5.61	3.49	10.79	5.48	7.41	9.38	1.97	0.541137	1.000000
K	intron_retention	TRIM38	chr6	+	chr6:25973305-25973400				chr6:25973304-25973305;chr6:25973400-25973401		1.90	0.00	6.33	NA	0.00	0.00	2.22	1.06	1.90	3.23	3.33	2.27	2.27	1.27	2.44	0.00	3.23	0.00	0.00	2.54	10.00	0.00	3.33	3.33	NA	2.73	1.61	2.78	3.70	5.00	2.44	6.85	5.88	0.00	7.32	4.88	2.22	2.17	-0.05	0.566445	1.000000
N	jcn_only_AA	IL4I1	chr19	-	chr19:50388144-50394227;chr19:50393698-50394227;chr19:50393755-50394227;chr19:50393858-50394227	chr19:50393731-50394227		chr19:50388144-50393697;chr19:50393698-50393730;chr19:50393731-50393754;chr19:50393755-50393857	chr19:50388143-50388144;chr19:50393697-50393698;chr19:50393730-50393731;chr19:50393754-50393755		2.02	0.00	2.47	2.63	3.16	5.06	0.00	1.88	2.01	5.10	0.00	1.54	0.00	1.73	1.97	5.31	3.85	2.96	0.00	1.58	1.46	2.22	3.40	2.02	0.00	1.52	1.87	7.41	2.44	4.63	1.32	2.06	0.00	0.00	6.16	2.27	0.00	1.66	1.66	0.000017	0.012360
K	intron_retention		chr8	-	chr8:144657264-144657360				chr8:144657263-144657264;chr8:144657360-144657361		15.38	27.06	36.11	30.23	32.88	29.06	1.89	8.33	0.00	9.09	6.52	4.00	3.75	11.11	13.04	16.13	4.84	0.00	29.58	22.58	14.61	50.00	35.71	20.00	28.10	14.71	22.22	25.00	22.22	23.33	27.45	23.44	25.35	25.00	20.69	20.00	26.20	15.05	-11.16	0.848069	1.000000
N	jcn_only_AD	MRPL14	chr6	-	chr6:44084367-44095080;chr6:44084367-44093689;chr6:44084367-44094369	chr6:44084367-44094991		chr6:44093690-44094369;chr6:44094370-44094991;chr6:44094992-44095080	chr6:44094369-44094370;chr6:44094991-44094992;chr6:44095080-44095081		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.25	0.00	8.33	36.67	0.00	8.82	17.50	0.00	0.00	26.67	0.00	0.00	0.00	8.47	3.08	0.00	0.00	0.00	0.00	4.65	0.00	19.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	DHRS4	chr14	+	chr14:24424422-24436419;chr14:24424422-24434970	chr14:24424422-24429110;chr14:24429213-24436419,chr14:24429213-24434970		chr14:24429111-24429212			NA	77.08	NA	75.00	83.33	77.78	89.66	93.18	100.00	90.00	92.06	91.49	93.75	92.86	92.31	91.67	94.64	92.86	85.71	81.82	86.49	84.00	87.23	100.00	96.88	89.47	100.00	95.24	92.16	93.75	73.33	76.19	72.34	90.32	89.19	83.33	87.69	89.47	1.78	0.967451	0.991515
N	alternative_acceptor	ARL2BP	chr16	+	chr16:57284420-57286153;chr16:57284420-57286077	chr16:57284420-57289806		chr16:57286078-57286153;chr16:57286154-57289806	chr16:57286153-57286154;chr16:57289806-57289807		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
N	jcn_only_AA	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007504-51007764	chr22:51007511-51007764		chr22:51007504-51007510	chr22:51007503-51007504		100.00	100.00	100.00	NA	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	98.31	100.00	100.00	NA	NA	NA	92.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.492260	0.749150
N	jcn_only_AA	ARHGAP9	chr12	-	chr12:57868481-57868657	chr12:57868487-57868657		chr12:57868481-57868486	chr12:57868480-57868481		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	97.50	94.74	100.00	NA	100.00	NA	100.00	100.00	98.15	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.649696	0.844334
N	cassette	NDUFA13	chr19	+	chr19:19637070-19638509	chr19:19637070-19638089;chr19:19638182-19638509		chr19:19638090-19638181			94.78	100.00	98.26	98.85	97.98	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.12	100.00	100.00	97.33	100.00	98.73	99.26	98.86	99.27	99.19	98.98	100.00	99.34	100.00	100.00	95.40	97.58	97.26	98.11	98.99	99.23	99.59	99.49	-0.10	0.517645	0.794646
K	cassette	YWHAB	chr20	+	chr20:43514528-43530171	chr20:43514528-43516185;chr20:43516384-43530171		chr20:43516186-43516383			3.08	2.27	4.19	6.25	5.19	2.86	4.29	3.57	4.57	7.84	5.81	6.49	4.38	4.37	4.81	5.62	6.61	5.41	5.56	2.38	2.86	6.82	3.68	5.88	0.00	1.34	1.69	6.17	5.43	4.90	1.10	3.09	1.59	6.67	5.30	5.32	3.28	2.73	-0.55	0.716255	0.899102
K	jcn_only_AD	ARFGAP2,LINC01001	chr11	-	chr11:47189803-47193003	chr11:47189803-47192976		chr11:47192977-47193003	chr11:47193003-47193004		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.63	100.00	100.00	100.00	100.00	92.00	100.00	95.65	100.00	93.75	NA	95.65	100.00	100.00	96.97	100.00	100.00	96.97	NA	100.00	95.45	98.04	100.00	100.00	0.00	0.197234	0.657607
K	intron_retention	SDS	chr12	-	chr12:113836957-113837360				chr12:113836956-113836957;chr12:113837360-113837361		2.89	20.83	1.89	NA	10.14	NA	0.00	0.48	0.15	0.80	0.66	0.00	0.00	0.00	0.00	1.43	0.00	0.00	40.00	2.25	3.51	3.70	2.34	7.14	25.00	3.52	2.43	0.00	1.30	0.00	5.60	3.62	45.83	2.68	3.45	2.75	22.91	2.57	-20.34	0.877699	1.000000
K	alternative_donor	CYB561A3	chr11	-	chr11:61118620-61120456	chr11:61118620-61120427		chr11:61120428-61120456	chr11:61120456-61120457		0.00	7.69	1.72	0.00	1.72	NA	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.52	0.00	0.00	1.20	1.47	0.00	0.00	0.00	0.73	1.83	0.00	2.06	0.92	1.08	0.00	0.36	0.36	0.586682	0.799662
N	alternative_acceptor	SLC8B1	chr12	-	chr12:113744381-113745495	chr12:113744402-113745495		chr12:113744381-113744401	chr12:113744380-113744381		3.45	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	2.78	0.00	2.33	0.00	0.00	NA	2.44	2.56	1.45	5.26	2.04	3.45	9.09	0.00	2.82	0.00	1.64	0.00	4.55	3.49	2.17	3.57	2.00	3.77	2.61	1.28	-1.33	0.276984	0.709013
K	intron_retention	TXNIP	chr1	+	chr1:145441054-145441182				chr1:145441053-145441054;chr1:145441182-145441183		2.79	0.00	2.93	NA	2.27	NA	0.20	0.31	0.00	0.00	0.00	0.00	0.49	0.00	0.42	0.00	0.00	NA	3.57	2.42	1.92	0.00	2.27	NA	0.00	1.92	2.66	0.00	1.82	NA	5.85	6.15	8.33	2.33	3.12	0.00	0.34	2.17	1.82	0.830578	1.000000
N	jcn_only_AD	PGS1	chr17	+	chr17:76419377-76420141;chr17:76416405-76420141;chr17:76415757-76420141	chr17:76415807-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		17.39	0.00	11.11	27.59	16.00	14.81	8.33	23.33	17.65	26.09	30.77	30.00	16.67	31.37	36.99	30.00	41.67	NA	12.50	20.00	17.86	30.77	22.22	13.64	NA	22.22	20.00	14.29	21.05	17.14	10.00	16.67	16.67	27.78	NA	15.62	12.50	21.11	8.61	0.045892	0.498009
K	intron_retention		chr14	-	chr14:24681036-24682614				chr14:24681035-24681036;chr14:24682614-24682615		5.88	3.19	7.25	18.75	10.42	15.38	0.00	0.00	1.10	0.00	0.00	0.00	2.70	0.00	2.53	2.27	1.15	0.00	4.08	8.16	4.69	5.56	3.61	9.38	7.41	6.25	6.25	4.17	4.76	0.00	11.36	8.77	6.25	13.04	0.00	11.11	3.63	6.06	2.43	0.832420	1.000000
N	alternative_acceptor		chr2	+	chr2:242598603-242606063	chr2:242598603-242606059		chr2:242606060-242606063	chr2:242606063-242606064		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	84.62	100.00	84.62	100.00	100.00	100.00	NA	94.12	96.97	100.00	100.00	100.00	100.00	100.00	97.06	-2.94	0.239357	0.694094
K	jcn_only_AA	SLIRP	chr14	+	chr14:78182223-78183822;chr14:78182223-78183838	chr14:78182223-78183844		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		2.78	0.65	7.02	2.47	2.38	2.70	3.33	0.00	0.00	2.99	0.00	1.89	0.00	0.00	3.92	2.02	0.94	1.54	4.30	10.71	3.25	4.35	5.13	5.13	0.00	0.00	5.77	2.13	2.78	0.00	8.70	0.00	3.51	7.84	1.47	3.51	1.99	1.39	-0.60	0.442673	0.706502
N	jcn_only_AA	CIRBP	chr19	+	chr19:1274440-1274650;chr19:1274440-1277181	chr19:1274440-1274647		chr19:1274648-1274650;chr19:1274651-1277181	chr19:1274650-1274651;chr19:1277181-1277182		94.23	100.00	91.14	98.10	96.82	99.17	100.00	100.00	93.75	NA	100.00	NA	100.00	NA	92.59	100.00	100.00	NA	97.76	95.35	94.51	94.44	93.90	88.46	100.00	92.65	93.64	100.00	91.55	100.00	93.07	88.98	95.61	97.44	92.16	100.00	100.00	94.23	-5.77	0.042399	0.663989
N	jcn_only_AA	NUP85	chr17	+	chr17:73230884-73231194;chr17:73230884-73231215;chr17:73230884-73231210	chr17:73230884-73231207		chr17:73231195-73231207;chr17:73231208-73231210;chr17:73231211-73231215	chr17:73231207-73231208;chr17:73231210-73231211;chr17:73231215-73231216		0.00	6.75	0.00	2.78	5.88	11.86	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.00	0.00	NA	3.66	11.11	5.17	0.00	4.88	0.00	5.95	NA	0.00	0.00	4.35	0.00	7.69	0.00	4.38	0.00	8.33	0.00	4.02	3.85	-0.17	0.703153	0.867936
K	cassette	ARRB1	chr11	-	chr11:74977319-74979932	chr11:74977319-74978695;chr11:74978748-74979932		chr11:74978696-74978747			100.00	100.00	93.83	91.67	95.74	100.00	98.08	93.94	96.51	97.06	100.00	100.00	100.00	91.67	96.99	100.00	98.75	100.00	96.83	100.00	94.74	100.00	98.25	100.00	100.00	100.00	98.33	100.00	98.53	100.00	NA	88.24	95.16	100.00	100.00	96.30	99.04	100.00	0.96	0.560964	0.824117
N	alternative_acceptor	SERPINB1	chr6	-	chr6:2836258-2836341;chr6:2833934-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2836225-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		3.17	0.00	1.08	1.47	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.78	1.47	2.86	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	6.93	5.26	4.26	4.40	0.00	2.43	0.00	1.58	1.58	0.213089	0.671511
K	intron_retention		chr17	+	chr17:7487284-7489049				chr17:7487283-7487284;chr17:7489049-7489050		18.18	47.62	16.88	79.07	48.39	80.49	4.11	8.08	2.41	21.15	14.29	8.11	1.69	3.61	1.27	13.74	5.95	10.91	46.43	17.24	51.06	37.14	35.71	17.86	47.62	15.94	11.11	36.36	31.94	22.95	31.15	21.05	69.77	32.18	26.23	12.64	47.02	16.59	-30.43	0.480021	1.000000
K	intron_retention	STRN4	chr19	-	chr19:47230804-47231150				chr19:47230803-47230804;chr19:47231150-47231151		9.52	0.00	20.00	NA	NA	NA	7.41	0.00	0.00	6.45	2.86	0.00	5.26	2.70	7.41	3.57	5.71	5.26	NA	12.50	NA	NA	11.11	14.29	33.33	4.55	19.05	7.69	12.50	NA	NA	11.11	NA	5.88	11.76	12.50	6.33	4.55	-1.79	0.868379	1.000000
N	alternative_donor	ZFYVE1,ZFYVE26	chr14	-	chr14:73437823-73440787	chr14:73437823-73439835		chr14:73439836-73440787	chr14:73440787-73440788		5.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.35	6.67	0.00	0.00	0.00	5.88	3.45	4.76	NA	0.00	0.00	3.33	2.78	0.00	4.76	6.67	3.70	0.00	3.39	3.39	0.225347	0.597397
K	jcn_only_AA	CASP1	chr11	-	chr11:104905116-104905833;chr11:104905430-104905833	chr11:104905202-104905833		chr11:104905116-104905201;chr11:104905202-104905429	chr11:104905115-104905116;chr11:104905201-104905202		80.81	66.67	81.55	58.82	75.86	NA	88.46	88.39	87.77	89.17	82.56	81.90	84.38	87.72	91.67	85.85	90.62	89.41	NA	87.80	70.59	83.02	75.00	81.32	38.89	84.35	82.76	79.44	81.36	84.62	82.35	79.55	NA	83.08	77.14	85.61	75.53	86.03	10.51	0.259918	0.663989
K	alternative_acceptor	TBC1D17	chr19	+	chr19:50388016-50390732	chr19:50388016-50388428		chr19:50388429-50390732	chr19:50390732-50390733		53.57	3.19	35.59	6.67	5.88	13.04	3.03	81.82	31.58	NA	NA	NA	4.76	87.50	56.67	17.65	NA	NA	4.62	50.00	9.38	40.00	32.26	57.14	5.00	62.07	21.95	31.25	9.09	37.50	16.67	10.91	3.30	33.33	39.39	48.39	3.96	57.82	53.86	0.003303	0.363177
N	alternative_acceptor	SCAMP3	chr1	-	chr1:155228746-155230120;chr1:155228684-155230120	chr1:155228704-155230120		chr1:155228684-155228703;chr1:155228704-155228745	chr1:155228683-155228684;chr1:155228703-155228704		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.03	2.33	3.33	4.08	0.00	4.08	0.00	0.00	5.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	PTPN6	chr12	+	chr12:7060895-7061145				chr12:7060894-7060895;chr12:7061145-7061146		6.15	6.12	7.97	0.00	7.02	NA	1.16	0.65	2.33	0.72	1.25	0.00	1.97	1.78	3.57	1.92	0.87	0.00	0.00	6.03	0.00	5.88	8.18	6.25	22.22	4.51	8.22	3.23	4.07	NA	8.11	8.62	18.18	6.92	6.60	7.50	4.04	5.27	1.22	0.854588	1.000000
N	jcn_only_AA	QKI	chr6	+	chr6:163983102-163984475;chr6:163983102-163984454	chr6:163983102-163984451		chr6:163984452-163984454;chr6:163984455-163984475	chr6:163984454-163984455;chr6:163984475-163984476		93.88	100.00	90.14	NA	100.00	NA	92.81	90.45	88.42	88.71	84.68	88.19	89.67	92.86	89.57	93.90	86.55	79.20	NA	92.42	NA	88.89	83.33	90.48	NA	91.89	97.06	81.82	90.70	80.00	86.36	83.64	100.00	87.23	87.50	83.64	96.41	92.16	-4.25	0.201021	0.663989
N	cassette	KYNU	chr2	+	chr2:143743591-143797996;chr2:143743591-143790804	chr2:143743591-143787195;chr2:143787249-143797996,chr2:143787249-143790804		chr2:143787196-143787248			95.10	100.00	96.59	100.00	100.00	100.00	100.00	98.62	98.86	99.67	100.00	100.00	100.00	98.16	98.20	100.00	100.00	99.06	94.44	92.98	95.65	96.91	100.00	98.65	NA	94.99	97.15	97.93	97.18	98.78	90.29	93.70	90.62	98.80	100.00	98.45	100.00	95.04	-4.96	0.417961	0.728056
N	alternative_acceptor	AHSA2	chr2	+	chr2:61413633-61413793;chr2:61413633-61413751	chr2:61413633-61415043		chr2:61413752-61413793;chr2:61413794-61415043	chr2:61413793-61413794;chr2:61415043-61415044		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	9.09	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	4.35	0.00	0.00	0.00	0.373901	0.709013
N	alternative_last_exon	MBD1	chr18	-	chr18:47796286-47799046,chr18:47797931-47799046,chr18:47796055-47799046;chr18:47794034-47799046;chr18:47788590-47799046	chr18:47796182-47799046,chr18:47796189-47799046,chr18:47797911-47799046	chr18:47793252-47794033;chr18:47788360-47788589	chr18:47795927-47796181			87.93	66.67	91.53	86.67	76.19	60.00	93.55	89.29	94.74	93.10	94.12	94.74	90.91	94.74	97.37	94.87	93.33	88.89	63.64	95.24	85.37	93.55	94.74	96.67	65.22	92.59	90.16	91.67	89.74	89.47	85.19	85.87	68.57	93.62	91.67	91.04	67.62	90.94	23.32	0.033436	0.222112
K	alternative_acceptor	RENBP	chrX	-	chrX:153208487-153208997	chrX:153208532-153208997		chrX:153208487-153208531	chrX:153208486-153208487		96.15	96.88	100.00	88.24	96.30	100.00	96.51	100.00	100.00	100.00	98.15	100.00	94.85	96.43	100.00	95.24	94.81	100.00	100.00	95.65	94.44	88.24	93.02	100.00	100.00	100.00	100.00	95.45	95.95	100.00	100.00	100.00	100.00	94.74	100.00	100.00	98.44	98.22	-0.22	0.998983	1.000000
N	jcn_only_AD	NISCH	chr3	+	chr3:52514312-52518528;chr3:52515054-52518528;chr3:52515126-52518528	chr3:52514320-52518528					0.00	9.52	0.00	NA	NA	NA	3.39	0.00	0.00	NA	0.00	NA	1.91	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	2.65	0.00	-2.65	0.169745	0.657607
N	jcn_only_AA	CLASRP	chr19	+	chr19:45572507-45572893;chr19:45572507-45573279	chr19:45572507-45573201		chr19:45572894-45573201;chr19:45573202-45573279	chr19:45573201-45573202;chr19:45573279-45573280		0.00	0.61	3.70	2.11	2.17	1.64	0.00	7.69	9.52	0.00	6.25	0.00	0.00	0.00	3.45	0.00	0.00	0.00	1.98	1.39	2.45	0.00	5.41	0.00	1.94	3.85	2.27	3.23	4.65	1.64	1.47	2.84	1.15	0.00	1.52	2.06	0.88	1.43	0.55	0.292598	0.663989
N	cassette	ITGAM	chr16	+	chr16:31308976-31332561	chr16:31308976-31309065;chr16:31309276-31332561		chr16:31309066-31309275			84.00	100.00	93.33	NA	NA	NA	95.26	100.00	100.00	97.87	93.08	98.08	95.71	100.00	NA	94.12	100.00	96.67	NA	100.00	100.00	89.47	97.96	97.14	83.33	85.71	92.59	100.00	100.00	100.00	100.00	92.00	NA	93.94	100.00	96.26	95.48	100.00	4.52	0.782566	0.935383
K	intron_retention	PRPF4B	chr6	+	chr6:4062534-4062790				chr6:4062533-4062534;chr6:4062790-4062791		13.89	3.49	11.90	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	16.67	NA	NA	NA	0.00	8.00	0.00	16.67	5.00	26.67	0.00	15.00	10.53	0.00	3.45	6.25	6.67	4.35	0.00	26.32	10.00	24.00	0.00	10.95	10.95	0.075162	1.000000
N	alternative_donor	SLC26A11	chr17	+	chr17:78225197-78226423;chr17:78225201-78226423;chr17:78225845-78226423	chr17:78226261-78226423		chr17:78225197-78225200;chr17:78225201-78225844;chr17:78225845-78226260	chr17:78225196-78225197;chr17:78225200-78225201;chr17:78225844-78225845		3.12	8.82	5.00	0.00	2.04	0.00	0.00	NA	NA	0.00	2.56	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	5.88	NA	4.35	3.03	0.00	0.00	4.35	8.33	0.00	2.33	0.00	9.38	5.88	4.76	2.00	2.94	1.89	0.00	5.12	5.12	0.132963	0.546830
K	intron_retention	ARRDC2	chr19	+	chr19:18119587-18119779				chr19:18119586-18119587;chr19:18119779-18119780		0.00	4.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	1.85	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	KLC1,PAPOLA	chr14	+	chr14:104159972-104164368;chr14:104159972-104166991;chr14:104159972-104162455	chr14:104159972-104160068		chr14:104160069-104162455;chr14:104162456-104164368;chr14:104164369-104166991	chr14:104162455-104162456;chr14:104164368-104164369;chr14:104166991-104166992		37.14	24.59	41.03	34.78	25.00	35.71	NA	53.85	50.00	64.71	66.67	NA	56.52	62.50	60.00	60.00	61.90	50.00	21.05	43.48	20.00	47.62	37.21	47.62	21.43	37.50	29.41	42.86	41.18	52.63	30.43	29.41	20.51	42.22	44.44	43.75	21.43	40.49	19.06	0.111658	0.605363
K	cassette	STAT6	chr12	-	chr12:57501098-57501945;chr12:57501098-57504911	chr12:57501098-57501441;chr12:57501527-57504911,chr12:57501527-57501945		chr12:57501442-57501526			62.50	55.88	48.89	NA	NA	NA	89.13	82.86	78.95	57.14	71.79	58.62	86.79	85.90	76.54	67.57	58.00	65.85	NA	73.08	NA	35.71	41.38	56.00	87.50	70.00	79.17	58.33	63.64	NA	NA	61.11	NA	54.17	55.88	52.38	87.15	73.08	-14.07	0.609670	0.853757
K	intron_retention		chr10	+	chr10:7848974-7849621				chr10:7848973-7848974;chr10:7849621-7849622		4.62	5.68	4.08	2.76	2.48	2.49	0.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.00	3.80	1.19	1.69	2.75	2.82	2.61	3.44	4.90	5.29	0.81	1.86	1.96	4.65	5.07	2.93	3.83	2.48	3.72	3.19	2.91	-0.28	0.334466	1.000000
K	jcn_only_AA	NPL	chr1	+	chr1:182794956-182798737	chr1:182794956-182797858		chr1:182797859-182798737	chr1:182798737-182798738		85.32	95.16	91.54	88.00	87.62	86.67	97.31	97.12	96.47	92.65	92.62	94.18	97.32	96.58	100.00	95.58	94.67	96.72	90.91	86.63	89.22	85.71	91.53	92.52	98.83	90.67	92.95	94.57	93.85	84.52	80.28	85.95	91.80	85.55	88.62	88.55	96.23	88.65	-7.58	0.094788	0.663989
K	jcn_only_AA	FGD2	chr6	+	chr6:36982815-36983575	chr6:36982815-36983543		chr6:36983544-36983575	chr6:36983575-36983576		95.92	87.50	NA	NA	NA	NA	97.37	94.51	93.94	100.00	95.00	100.00	95.31	93.98	92.86	82.35	100.00	95.83	NA	94.52	NA	NA	100.00	100.00	100.00	92.48	NA	93.75	100.00	90.00	92.00	100.00	NA	100.00	100.00	93.51	96.34	94.25	-2.09	0.703821	0.868280
K	alternative_donor	UFD1L	chr22	-	chr22:19438268-19442324	chr22:19438268-19442271		chr22:19442272-19442324	chr22:19442324-19442325		100.00	94.90	89.66	100.00	98.15	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.26	93.10	96.77	94.12	100.00	100.00	93.85	100.00	93.10	100.00	96.43	100.00	97.22	91.89	92.92	92.59	100.00	96.30	95.58	100.00	4.42	0.252017	0.623776
K	cassette	DAZAP1	chr19	+	chr19:1422396-1428840	chr19:1422396-1425876;chr19:1425960-1428840		chr19:1425877-1425959			76.32	59.18	82.98	77.27	79.07	NA	95.00	100.00	93.44	96.47	95.54	98.15	96.15	98.00	88.75	95.96	97.26	98.57	57.14	67.39	83.33	82.86	84.13	85.29	100.00	86.21	81.82	94.64	93.75	92.31	56.00	66.67	39.29	80.77	71.43	86.27	77.09	81.26	4.17	0.637227	0.868138
N	alternative_donor	BST2	chr19	-	chr19:17514136-17514488;chr19:17514136-17514484	chr19:17514136-17514507		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		0.13	0.00	0.00	0.00	0.00	0.00	16.91	10.78	11.78	13.04	14.18	13.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.00	0.00	0.00	0.00	0.00	0.00	0.759498	0.902356
N	jcn_only_AA	NXF1	chr11	-	chr11:62561913-62562406;chr11:62561939-62562406	chr11:62561871-62562406		chr11:62561871-62561912;chr11:62561913-62561938	chr11:62561870-62561871;chr11:62561912-62561913		14.94	19.29	11.76	16.46	12.90	8.33	0.00	8.77	7.69	11.11	9.09	14.81	6.45	11.67	6.45	10.00	11.54	9.52	10.34	6.62	8.85	11.11	11.11	10.08	12.68	9.17	11.93	7.46	5.56	9.55	9.20	10.11	10.43	11.43	17.24	14.22	10.38	9.18	-1.20	0.947367	0.981281
K	intron_retention	FGD3	chr9	+	chr9:95782144-95782598				chr9:95782143-95782144;chr9:95782598-95782599		6.00	0.00	7.04	NA	4.17	NA	0.00	0.00	0.00	NA	0.00	NA	1.64	1.39	0.00	NA	0.00	NA	2.33	1.56	7.69	NA	2.27	NA	0.00	5.06	5.88	0.00	0.00	NA	1.89	1.52	3.92	0.00	5.26	0.00	0.82	1.73	0.91	0.601921	1.000000
K	intron_retention	CD163L1	chr12	-	chr12:7527353-7527426				chr12:7527352-7527353;chr12:7527426-7527427		26.85	15.27	30.30	5.26	4.00	NA	3.85	NA	NA	5.56	8.33	0.00	4.35	58.82	NA	3.57	1.33	0.00	12.00	31.25	28.57	10.34	11.43	17.11	0.00	42.86	33.33	18.75	6.67	30.00	26.32	31.11	4.76	7.23	10.81	15.38	4.55	31.25	26.70	0.012740	1.000000
K	alternative_acceptor	EIF3G	chr19	-	chr19:10226458-10226642	chr19:10226497-10226642		chr19:10226458-10226496	chr19:10226457-10226458		98.55	97.69	100.00	100.00	100.00	91.74	100.00	97.56	98.63	97.98	99.00	97.67	98.92	97.06	100.00	99.19	99.12	100.00	93.52	96.61	95.61	100.00	100.00	91.49	98.75	95.08	98.11	100.00	100.00	100.00	97.22	96.04	94.69	100.00	100.00	100.00	98.22	97.14	-1.08	0.835657	0.940678
N	jcn_only_AA	TMEM18	chr2	-	chr2:675628-677288;chr2:675631-677288	chr2:676239-677288					0.00	0.00	5.00	0.00	0.00	0.00	5.00	7.41	5.08	0.00	2.50	2.13	13.73	6.45	7.46	6.38	6.90	4.26	0.00	7.14	0.00	4.17	0.00	0.00	NA	0.00	4.35	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	3.23	3.23	0.939177	0.980174
N	jcn_only_AD	RXRA	chr9	+	chr9:137293729-137299994	chr9:137299339-137299994		chr9:137293729-137299338	chr9:137293728-137293729		0.00	0.00	0.00	NA	NA	NA	4.60	0.00	0.00	3.70	3.64	0.00	5.61	0.00	0.00	4.17	3.25	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	4.00	NA	NA	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.180582	0.657607
K	cassette	COPS6	chr7	+	chr7:99687370-99688214	chr7:99687370-99688021;chr7:99688111-99688214		chr7:99688022-99688110			93.94	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	96.43	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	96.15	93.75	91.18	100.00	95.24	94.59	100.00	100.00	100.00	0.00	0.341495	0.709176
N	coord_cassette	DAP3	chr1	+	chr1:155697530-155701146	chr1:155697530-155698832;chr1:155698914-155698998;chr1:155699158-155701146		chr1:155698833-155698913;chr1:155698999-155699157			100.00	100.00	100.00	95.00	98.48	100.00	100.00	100.00	100.00	100.00	98.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	100.00	0.00	0.571741	0.751088
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7217723-7217806				chr17:7217722-7217723;chr17:7217806-7217807		4.69	0.00	2.38	0.00	0.00	0.00	0.00	0.00	1.89	2.17	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	1.41	4.44	2.22	3.23	5.77	0.00	1.37	1.49	2.38	1.49	0.00	7.14	4.04	0.00	2.82	4.94	4.90	0.00	1.39	1.39	0.209155	1.000000
K	intron_retention	ARFGAP2	chr11	-	chr11:47189803-47192976				chr11:47189802-47189803;chr11:47192976-47192977		11.11	18.18	12.90	NA	8.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.70	2.70	0.00	0.00	16.67	11.54	13.33	12.00	10.26	14.29	18.18	8.33	14.63	5.88	8.57	5.26	10.00	13.51	NA	21.21	8.70	15.25	16.67	9.16	-7.51	0.980905	1.000000
K	jcn_only_AD	ILKAP	chr2	-	chr2:239096899-239098499;chr2:239096899-239098503	chr2:239096899-239098493		chr2:239098494-239098499;chr2:239098500-239098503	chr2:239098499-239098500;chr2:239098503-239098504		71.43	100.00	82.76	92.31	86.11	90.91	85.71	100.00	94.74	91.89	90.00	93.33	94.12	81.82	90.48	100.00	100.00	85.71	NA	77.78	93.33	87.50	90.62	85.19	NA	NA	84.00	100.00	90.00	80.77	75.00	81.82	75.00	82.61	82.76	79.17	89.91	77.78	-12.13	0.344854	0.657607
N	jcn_only_AA	LAIR1	chr19	-	chr19:54872817-54875901;chr19:54872851-54875901;chr19:54874623-54875901	chr19:54872814-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		16.81	8.47	14.00	15.00	12.07	0.00	14.64	15.03	14.03	12.75	13.17	13.09	14.38	13.75	17.07	13.83	12.70	14.75	7.14	16.56	17.39	17.33	13.04	17.39	0.00	15.26	15.27	13.49	15.67	16.49	16.84	15.76	19.35	14.15	12.83	15.56	11.43	15.91	4.48	0.133354	0.663989
N	alternative_donor	USP47	chr11	+	chr11:11976693-11977547	chr11:11976712-11977547		chr11:11976693-11976711	chr11:11976692-11976693		100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.75	100.00	100.00	94.44	95.24	100.00	100.00	94.12	100.00	96.15	100.00	100.00	100.00	0.00	0.933829	0.984606
N	alternative_acceptor	CD276	chr15	+	chr15:73996814-74000684;chr15:73996814-74000679	chr15:73996814-74000703		chr15:74000680-74000684;chr15:74000685-74000703	chr15:74000684-74000685;chr15:74000703-74000704		0.00	0.00	NA	NA	8.70	20.00	11.76	0.00	0.00	0.00	9.76	0.00	0.00	0.00	NA	7.87	12.82	15.29	NA	0.00	0.00	0.00	11.11	6.90	NA	0.00	0.00	4.55	0.00	0.00	11.54	NA	0.00	11.90	9.43	8.93	0.00	0.00	0.00	0.782863	0.917646
N	alternative_acceptor	HADHB	chr2	+	chr2:26508440-26512785;chr2:26508440-26510466	chr2:26508440-26512181		chr2:26510467-26512181;chr2:26512182-26512785	chr2:26512181-26512182;chr2:26512785-26512786		4.76	2.09	2.04	3.80	2.23	1.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.71	3.57	2.96	1.10	0.50	3.49	1.75	4.84	4.12	1.35	2.87	3.48	2.90	6.90	3.18	0.79	4.26	1.27	1.23	3.23	2.00	0.217059	0.671511
N	alternative_acceptor	VPS16	chr20	+	chr20:33104267-33114076	chr20:33104267-33114072		chr20:33114073-33114076	chr20:33114076-33114077		100.00	100.00	97.14	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	96.43	92.19	100.00	100.00	100.00	95.15	100.00	100.00	100.00	91.18	100.00	100.00	100.00	94.87	100.00	100.00	91.38	94.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.982427	0.994790
K	cassette	FIP1L1	chr4	+	chr4:54294351-54308819	chr4:54294351-54306748;chr4:54306776-54308819		chr4:54306749-54306775			15.38	13.33	23.26	9.52	20.00	NA	23.08	21.43	11.43	25.42	21.05	16.67	18.52	11.76	13.33	16.67	18.60	14.29	0.00	12.50	23.81	11.43	23.53	16.67	0.00	20.00	17.65	14.29	15.38	17.65	4.55	11.63	18.75	15.62	19.05	20.51	15.93	13.94	-1.98	0.688558	0.885445
K	intron_retention	KAT5	chr11	+	chr11:65482215-65482291				chr11:65482214-65482215;chr11:65482291-65482292		6.82	0.00	8.47	0.00	4.17	NA	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	8.00	0.00	4.17	8.51	8.33	1.96	2.78	3.57	0.00	0.00	4.76	7.32	NA	2.27	4.88	5.00	0.00	3.36	3.36	0.980230	1.000000
N	alternative_donor	AMZ2P1,PELP1	chr17	-	chr17:62964500-62968651;chr17:62964500-62968435	chr17:62964500-62967040		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		9.52	0.00	6.67	3.45	1.19	1.67	0.00	0.00	0.00	NA	10.00	NA	4.00	0.00	7.69	10.00	9.09	NA	0.00	9.09	4.35	7.14	2.70	0.00	1.35	3.85	4.55	0.00	0.00	0.00	10.71	10.20	1.89	6.82	2.94	8.33	0.68	6.47	5.79	0.084713	0.475124
N	jcn_only_AA	CPNE1	chr20	-	chr20:34214723-34215201;chr20:34214726-34215201;chr20:34214775-34215201	chr20:34214749-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		1.43	0.00	0.00	0.00	0.78	1.33	0.00	0.00	2.44	0.00	0.00	0.00	2.78	3.12	2.94	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.00	3.17	0.00	0.00	0.00	0.00	0.00	0.00	1.30	1.30	0.199913	0.663989
K	intron_retention	RAB4B-EGLN2	chr19	+	chr19:41284297-41285923				chr19:41284296-41284297;chr19:41285923-41285924		4.17	0.00	2.78	0.00	2.63	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	12.50	1.43	0.00	0.00	1.75	0.00	NA	2.42	3.80	0.00	1.82	2.63	0.00	8.16	0.00	6.06	4.55	4.76	0.00	0.71	0.71	0.884660	1.000000
N	cassette	TREM2	chr6	-	chr6:41126519-41127529;chr6:41126207-41130780;chr6:41126519-41129000;chr6:41126519-41130780	chr6:41126519-41126610,chr6:41126207-41126610;chr6:41126805-41127529,chr6:41126805-41130780,chr6:41126805-41129000		chr6:41126611-41126804			87.84	90.96	100.00	90.06	91.93	89.51	95.85	94.95	94.83	94.19	93.99	93.72	97.32	95.00	100.00	94.63	94.83	94.75	88.81	80.00	91.72	91.41	91.98	88.89	90.64	92.31	95.00	94.57	94.92	95.55	94.83	95.00	88.62	93.90	93.95	91.03	90.80	93.57	2.77	0.683198	0.884591
K	intron_retention		chr16	-	chr16:30370139-30370492				chr16:30370138-30370139;chr16:30370492-30370493		1.89	0.00	5.56	NA	0.00	NA	0.00	1.82	4.88	4.17	3.45	0.00	1.89	0.00	1.92	0.00	0.00	0.00	NA	0.00	5.00	8.33	3.70	NA	12.50	1.89	2.50	0.00	0.00	0.00	3.45	6.00	9.09	11.11	6.67	5.00	1.89	1.85	-0.03	0.787444	1.000000
K	jcn_only_AA	MGAT4B	chr5	-	chr5:179225577-179225927	chr5:179225592-179225927		chr5:179225577-179225591	chr5:179225576-179225577		97.14	95.71	91.67	93.75	95.42	89.47	100.00	97.62	97.14	96.92	98.29	97.44	98.33	100.00	97.44	98.84	100.00	96.67	91.36	89.80	96.97	92.68	91.45	88.46	97.59	97.67	94.64	96.43	99.11	96.77	93.44	94.55	89.41	96.67	88.76	90.48	96.65	97.38	0.73	0.815150	0.925199
K	intron_retention	CCAR2	chr8	+	chr8:22473762-22474932				chr8:22473761-22473762;chr8:22474932-22474933		4.17	0.00	11.32	8.33	3.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	5.45	0.00	3.57	7.55	8.33	0.00	5.88	2.38	0.00	4.76	0.00	2.27	4.17	0.00	0.00	3.51	5.45	0.00	3.22	3.22	0.780250	1.000000
K	cassette	USP39	chr2	+	chr2:85872207-85875883	chr2:85872207-85875052;chr2:85875140-85875883		chr2:85875053-85875139			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	0.00	0.952728	0.987421
K	intron_retention	PABPC1	chr8	-	chr8:101733848-101733940				chr8:101733847-101733848;chr8:101733940-101733941		96.43	100.00	100.00	NA	100.00	NA	100.00	100.00	94.40	95.64	97.12	96.16	93.93	96.64	93.33	95.38	97.91	96.58	NA	100.00	100.00	100.00	100.00	95.59	100.00	100.00	100.00	100.00	100.00	93.55	100.00	95.97	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.986744	1.000000
K	intron_retention	GMPR2	chr14	+	chr14:24706558-24706725				chr14:24706557-24706558;chr14:24706725-24706726		6.25	0.00	5.26	NA	2.33	NA	1.16	4.69	1.82	4.17	2.27	9.09	0.00	3.64	0.00	3.12	4.84	7.14	0.00	0.00	2.56	0.00	5.71	20.00	0.00	3.39	1.45	5.88	1.89	0.00	0.00	3.64	0.00	3.33	2.86	3.45	0.00	3.52	3.52	0.208924	1.000000
K	intron_retention	MED25	chr19	+	chr19:50339664-50340103				chr19:50339663-50339664;chr19:50340103-50340104		10.31	6.55	13.95	7.69	7.94	10.64	0.00	0.00	0.00	NA	NA	0.00	5.13	3.03	3.57	0.00	0.00	0.00	6.59	16.07	5.45	NA	9.09	30.00	7.75	10.81	12.50	23.53	8.70	9.43	6.41	11.11	6.36	21.43	9.09	21.43	6.46	8.36	1.90	0.742330	1.000000
N	alternative_acceptor	MBD4	chr3	-	chr3:129150422-129151398	chr3:129150454-129151398		chr3:129150422-129150453	chr3:129150421-129150422		60.71	57.41	52.38	NA	58.49	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	53.19	52.17	50.00	NA	69.70	NA	50.00	69.23	59.46	NA	69.57	NA	50.00	52.63	60.00	35.71	63.89	NA	55.30	56.44	1.14	0.587086	0.844027
K	intron_retention		chr8	+	chr8:42932508-42938260				chr8:42932507-42932508;chr8:42938260-42938261		0.00	0.00	3.70	NA	0.00	NA	2.99	8.57	6.00	8.51	5.80	6.25	2.94	8.33	12.24	7.46	12.77	11.76	0.00	10.00	0.00	7.69	2.50	3.33	NA	0.00	1.92	2.56	1.69	3.12	0.00	5.56	0.00	1.75	3.66	4.00	0.00	4.17	4.17	0.505445	1.000000
N	alternative_acceptor	ACOX3	chr4	-	chr4:8368610-8372634	chr4:8368808-8372634		chr4:8368610-8368807	chr4:8368609-8368610		100.00	100.00	100.00	95.35	85.71	94.19	100.00	NA	100.00	95.00	100.00	94.25	100.00	NA	100.00	96.77	100.00	95.52	88.89	91.67	100.00	94.44	100.00	94.74	100.00	100.00	100.00	100.00	100.00	92.20	100.00	100.00	100.00	95.24	100.00	93.84	100.00	100.00	0.00	0.936303	0.982536
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648791-75648946;chr15:75648815-75648946	chr15:75648780-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		0.00	0.00	4.76	0.00	0.00	4.26	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	2.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	3.57	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.573371	0.837698
N	jcn_only_AD	SNN	chr16	+	chr16:11769026-11769830;chr16:11764019-11769830;chr16:11764564-11769830	chr16:11762397-11769830		chr16:11762397-11764018;chr16:11764019-11764563;chr16:11764564-11769025	chr16:11762396-11762397;chr16:11764018-11764019;chr16:11764563-11764564		100.00	100.00	100.00	100.00	NA	93.22	97.85	97.01	100.00	98.15	100.00	91.53	100.00	96.25	100.00	99.26	100.00	95.18	100.00	100.00	100.00	100.00	100.00	94.64	100.00	100.00	NA	96.67	100.00	94.25	100.00	NA	100.00	100.00	100.00	98.67	100.00	100.00	0.00	0.370315	0.657607
K	intron_retention	SMG9	chr19	-	chr19:44238648-44241748				chr19:44238647-44238648;chr19:44241748-44241749		11.11	13.95	17.50	4.17	8.33	0.00	0.00	3.45	0.00	0.00	0.00	1.75	0.00	0.00	8.00	0.00	1.03	1.47	16.67	11.11	13.04	9.52	10.87	10.53	0.00	14.29	11.43	6.25	8.33	8.00	0.00	9.52	9.09	19.23	6.98	8.77	4.54	7.28	2.73	0.819898	1.000000
K	cassette	SIGIRR	chr11	-	chr11:406539-407061	chr11:406539-406842;chr11:406994-407061		chr11:406843-406993			77.27	84.48	64.29	70.00	64.29	81.25	100.00	63.64	NA	NA	100.00	NA	89.66	54.17	66.67	72.73	75.00	NA	93.10	NA	72.22	NA	76.92	NA	91.53	81.82	55.00	NA	62.50	84.62	NA	NA	89.29	NA	NA	NA	90.59	70.45	-20.14	0.033570	0.459963
K	alternative_acceptor	HSPA8	chr11	-	chr11:122930920-122931300	chr11:122930977-122931300		chr11:122930920-122930976	chr11:122930919-122930920		96.93	100.00	96.94	95.24	98.59	NA	96.88	96.91	97.82	98.41	97.63	97.27	97.13	96.62	97.46	97.26	97.21	96.72	86.36	94.65	93.22	100.00	97.92	96.79	NA	96.26	96.52	96.57	96.74	95.16	96.55	95.36	95.65	98.56	99.02	98.62	96.88	96.59	-0.29	0.658502	0.875119
N	jcn_only_AA	SLCO2B1	chr11	+	chr11:74914473-74914912;chr11:74914473-74921929;chr11:74914473-74914893;chr11:74914473-74925486;chr11:74914473-74915444	chr11:74914473-74925508		chr11:74914894-74914912;chr11:74914913-74915444;chr11:74915445-74921929;chr11:74921930-74925486;chr11:74925487-74925508	chr11:74914912-74914913;chr11:74915444-74915445;chr11:74921929-74921930;chr11:74925486-74925487;chr11:74925508-74925509		1.60	28.91	3.41	16.67	13.48	17.39	0.00	0.00	0.00	0.00	1.30	0.00	0.49	1.64	0.00	0.00	0.00	2.04	22.58	5.61	13.64	7.14	6.88	13.79	30.14	3.28	6.38	7.69	3.17	10.00	NA	0.00	30.56	11.76	3.92	0.00	25.74	1.64	-24.10	0.040591	0.663989
N	jcn_only_AA	DAZAP1	chr19	+	chr19:1418731-1421149;chr19:1418731-1419670	chr19:1418731-1421146		chr19:1419671-1421146;chr19:1421147-1421149	chr19:1421146-1421147;chr19:1421149-1421150		76.32	87.10	85.11	NA	67.74	NA	81.03	79.07	76.79	73.96	79.28	77.78	79.25	74.42	82.19	79.73	76.61	77.78	92.86	92.00	80.00	84.00	83.33	88.46	100.00	90.00	85.00	75.00	84.44	80.00	86.67	80.00	85.71	86.00	89.74	75.00	86.41	82.87	-3.53	0.320413	0.663989
N	alternative_acceptor	STK40	chr1	-	chr1:36809866-36814300	chr1:36812321-36814300		chr1:36809866-36812320	chr1:36809865-36809866		4.65	5.26	5.00	NA	6.67	NA	0.00	0.00	0.00	0.00	0.77	0.00	2.13	1.05	1.85	0.00	0.74	0.00	NA	2.22	8.33	1.67	3.70	1.05	10.00	3.85	4.76	2.70	1.47	0.00	2.27	4.17	NA	4.17	3.53	1.55	3.69	2.25	-1.45	0.433383	0.744078
K	intron_retention	FAM195B	chr17	-	chr17:79780784-79781084				chr17:79780783-79780784;chr17:79781084-79781085		82.61	78.36	88.24	85.45	86.57	76.52	73.75	87.10	82.50	80.43	84.62	80.65	73.81	100.00	97.44	76.74	90.74	80.56	67.11	78.05	70.65	91.38	84.16	81.36	80.46	88.89	82.35	81.25	85.00	81.15	76.92	84.62	81.95	81.82	81.25	76.79	76.09	84.85	8.77	0.132245	1.000000
N	jcn_only_AA	CKLF-CMTM1,CMTM1,PHKG2	chr16	+	chr16:30762925-30764552	chr16:30762925-30764505		chr16:30764506-30764552	chr16:30764552-30764553		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	6.25	0.00	0.00	NA	0.00	0.00	4.55	0.00	0.00	NA	8.33	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
N	jcn_only_AD	CHPT1	chr12	+	chr12:102117626-102122678;chr12:102120276-102122678;chr12:102120183-102122678	chr12:102120296-102122678					NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.25	0.00	0.00	4.44	0.00	0.00	0.00	0.00	0.00	0.438997	0.696909
K	jcn_only_AA	THOP1	chr19	+	chr19:2810767-2811631	chr19:2810767-2811595		chr19:2811596-2811631	chr19:2811631-2811632		100.00	100.00	100.00	96.77	94.64	97.50	94.12	NA	95.00	92.86	92.31	NA	100.00	100.00	90.48	100.00	100.00	100.00	90.38	87.50	97.06	93.75	94.87	100.00	100.00	NA	93.10	100.00	96.30	95.24	100.00	91.67	93.18	100.00	92.00	100.00	97.06	100.00	2.94	0.874537	0.951519
N	jcn_only_AA	CD300C	chr17	-	chr17:72536662-72538999;chr17:72534063-72538999	chr17:72537876-72538999		chr17:72534063-72536661;chr17:72536662-72537875	chr17:72534062-72534063;chr17:72536661-72536662		100.00	100.00	98.69	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	97.37	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	91.88	100.00	100.00	100.00	98.18	100.00	100.00	100.00	100.00	92.68	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr20	+	chr20:57288600-57288972				chr20:57288599-57288600;chr20:57288972-57288973		18.75	15.05	21.21	17.65	20.37	9.52	2.94	0.00	0.00	0.00	0.00	0.00	8.57	11.11	13.79	0.00	3.12	0.00	11.11	19.05	16.67	9.09	16.67	10.00	10.59	15.62	29.73	23.53	17.24	25.00	24.00	28.12	14.29	15.38	29.17	22.22	10.85	17.18	6.33	0.676475	1.000000
N	cassette	PSMA5	chr1	-	chr1:109957986-109968923	chr1:109957986-109964481;chr1:109964549-109968923		chr1:109964482-109964548			96.58	100.00	94.17	96.92	100.00	96.15	100.00	98.52	96.92	100.00	100.00	100.00	100.00	97.83	94.61	97.61	100.00	100.00	100.00	94.92	97.80	98.08	100.00	94.40	100.00	100.00	100.00	97.87	97.94	99.05	96.12	92.91	100.00	100.00	100.00	97.21	100.00	97.20	-2.80	0.015735	0.372211
K	intron_retention	IRF7	chr11	-	chr11:615260-615344				chr11:615259-615260;chr11:615344-615345		24.43	42.11	42.11	39.39	43.75	28.38	28.57	28.49	23.28	24.44	29.41	15.18	19.23	30.23	23.42	18.58	31.82	15.28	NA	21.68	31.91	28.12	41.18	23.17	NA	23.48	32.89	31.50	NA	24.89	28.60	38.67	41.67	35.83	31.58	28.75	35.12	26.46	-8.66	0.955567	1.000000
N	cassette	PPIG	chr2	+	chr2:170487498-170488275;chr2:170487498-170488284	chr2:170487498-170488108;chr2:170488158-170488275,chr2:170488158-170488284		chr2:170488109-170488157			5.00	40.00	2.86	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	2.86	0.00	0.00	NA	4.17	NA	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	NA	0.00	1.67	2.78	1.04	2.08	1.04	0.479563	0.771310
N	alternative_acceptor	ITGA5	chr12	-	chr12:54801661-54801893	chr12:54801804-54801893		chr12:54801661-54801803	chr12:54801660-54801661		0.77	0.00	0.41	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.78	0.00	0.00	1.12	0.98	9.09	0.00	0.00	0.00	0.00	0.00	1.59	0.78	NA	1.48	0.00	1.47	0.00	0.39	0.39	0.498820	0.791230
K	intron_retention	CHTOP	chr1	+	chr1:153615841-153617539				chr1:153615840-153615841;chr1:153617539-153617540		14.81	0.00	11.76	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.33	0.00	0.00	2.00	7.14	2.70	7.69	0.00	7.69	0.00	0.00	6.25	3.45	0.00	2.13	7.14	7.50	2.86	5.00	11.11	6.98	0.00	3.57	3.57	0.574216	1.000000
N	alternative_acceptor	CD86	chr3	+	chr3:121836941-121838284;chr3:121836941-121838286	chr3:121836941-121850760		chr3:121838285-121838286;chr3:121838287-121850760	chr3:121838286-121838287;chr3:121850760-121850761		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	7.41	1.92	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	alternative_acceptor	RNF31,TNFAIP2	chr14	+	chr14:24627221-24627375	chr14:24627221-24627350		chr14:24627351-24627375	chr14:24627375-24627376		88.00	100.00	88.89	100.00	94.74	77.78	100.00	100.00	78.95	100.00	NA	100.00	100.00	100.00	100.00	81.82	NA	NA	82.61	85.29	82.50	81.82	87.50	72.22	100.00	81.58	86.21	69.23	83.33	78.57	81.63	88.89	90.00	85.00	100.00	86.05	100.00	86.65	-13.35	0.223130	0.676614
K	intron_retention	BCKDK	chr16	+	chr16:31122083-31122411				chr16:31122082-31122083;chr16:31122411-31122412		2.86	0.00	11.11	0.00	6.06	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	4.55	2.44	6.52	0.00	6.25	7.69	0.00	6.90	10.17	0.00	4.44	0.00	6.25	6.12	9.09	4.76	11.63	0.00	0.00	2.65	2.65	0.448236	1.000000
K	intron_retention	ZEB2-AS1	chr2	+	chr2:145277678-145277781				chr2:145277677-145277678;chr2:145277781-145277782		22.22	6.25	61.11	0.00	0.00	0.00	94.12	95.83	89.66	93.33	88.57	64.71	91.07	92.19	90.91	73.33	93.33	66.67	0.00	11.76	8.33	0.00	15.38	28.57	NA	45.00	63.64	NA	NA	16.67	7.69	14.29	0.00	39.13	32.14	29.63	6.25	33.61	27.36	0.964540	1.000000
K	cassette	ADAM8	chr10	-	chr10:135083034-135083863	chr10:135083034-135083400;chr10:135083479-135083863		chr10:135083401-135083478			97.22	100.00	96.84	100.00	95.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	98.04	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	98.80	100.00	100.00	94.59	98.25	100.00	98.61	-1.39	0.081965	0.641134
K	intron_retention	KMT2B	chr19	+	chr19:36229093-36229182				chr19:36229092-36229093;chr19:36229182-36229183		3.85	2.22	9.84	4.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	7.14	0.00	NA	3.03	4.55	3.77	3.57	7.41	6.90	0.00	7.14	4.76	0.00	4.76	1.61	7.35	7.06	9.43	7.50	4.88	1.64	2.62	4.20	1.58	0.599059	1.000000
K	alternative_donor	BAZ2A,HDAC7	chr12	-	chr12:48178001-48179169	chr12:48178001-48179015		chr12:48179016-48179169	chr12:48179169-48179170		5.00	15.15	11.76	NA	30.00	NA	4.76	4.55	3.12	0.00	13.33	NA	0.00	0.00	3.03	NA	0.00	NA	NA	7.69	13.33	NA	10.00	NA	18.75	4.35	7.84	9.09	25.00	6.67	0.00	9.52	20.00	7.14	14.29	15.00	15.15	4.45	-10.70	0.110642	0.520337
N	alternative_acceptor	LMF2	chr22	-	chr22:50942864-50942987	chr22:50942881-50942987		chr22:50942864-50942880	chr22:50942863-50942864		100.00	100.00	100.00	100.00	90.91	NA	100.00	100.00	100.00	90.00	100.00	100.00	90.91	100.00	89.74	100.00	94.12	93.75	100.00	92.59	100.00	92.31	100.00	100.00	100.00	93.48	100.00	100.00	100.00	85.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	97.15	-2.85	0.425842	0.738651
K	intron_retention	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139918669-139921756				chr5:139918668-139918669;chr5:139921756-139921757		14.29	0.00	18.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	6.67	0.00	6.67	0.00	0.00	0.00	14.71	0.00	5.88	0.00	7.69	12.50	5.26	0.00	0.00	4.00	0.00	0.00	0.00	0.879812	1.000000
N	alternative_first_exon	CTDSP1	chr2	+	chr2:219263774-219266286,chr2:219265677-219266286,chr2:219260048-219266286,chr2:219265839-219266286,chr2:219265621-219266286,chr2:219265103-219266286;chr2:219259790-219266286;chr2:219264198-219266286	chr2:219264881-219266286	chr2:219259648-219259789;chr2:219264100-219264197	chr2:219264478-219264880			51.28	50.00	33.33	NA	15.79	0.00	84.62	73.68	79.17	78.57	80.00	NA	81.25	68.18	73.33	87.50	86.21	NA	NA	66.67	NA	NA	86.67	NA	NA	80.00	23.64	NA	66.67	NA	40.00	43.75	20.00	42.86	43.48	NA	65.62	67.43	1.80	0.803777	0.865357
K	intron_retention		chr15	-	chr15:89862331-89862458				chr15:89862330-89862331;chr15:89862458-89862459		0.00	0.00	6.12	0.00	4.55	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	0.00	3.23	5.56	5.00	NA	4.17	9.68	0.00	0.00	0.00	0.00	7.32	0.00	2.63	3.45	1.64	0.00	0.00	0.00	0.475380	1.000000
N	jcn_only_AD	ANAPC13	chr3	-	chr3:134201774-134202097;chr3:134201774-134204793;chr3:134201774-134204157;chr3:134201774-134204542	chr3:134201774-134204161		chr3:134202098-134204157;chr3:134204158-134204161;chr3:134204162-134204542;chr3:134204543-134204793	chr3:134204157-134204158;chr3:134204161-134204162;chr3:134204542-134204543;chr3:134204793-134204794		78.95	50.00	60.00	NA	62.50	NA	50.00	93.75	65.62	15.38	51.06	57.89	43.24	82.35	83.33	70.83	68.57	60.00	45.45	75.00	57.14	NA	53.57	40.00	NA	62.50	48.57	56.25	52.00	43.75	100.00	56.00	18.75	64.29	56.25	66.67	45.45	80.65	35.20	0.000734	0.078190
K	cassette	SSR2	chr1	-	chr1:155981679-155989803	chr1:155981679-155987922;chr1:155988160-155989803		chr1:155987923-155988159			100.00	100.00	98.40	100.00	98.44	95.83	98.90	100.00	98.08	98.55	98.90	98.31	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	98.53	100.00	100.00	100.00	90.48	98.98	96.70	100.00	100.00	98.21	97.67	100.00	100.00	100.00	100.00	97.92	100.00	99.49	-0.51	0.698536	0.889398
K	jcn_only_AD	HAUS1	chr18	+	chr18:43705758-43708040	chr18:43706734-43708040		chr18:43705758-43706733	chr18:43705757-43705758		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	2.22	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.519689	0.754861
N	alternative_donor	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99957161-99964971;chr7:99959007-99964971	chr7:99964788-99964971		chr7:99957161-99959006;chr7:99959007-99964787	chr7:99957160-99957161;chr7:99959006-99959007		5.26	1.54	3.23	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	6.67	NA	NA	NA	0.00	4.35	0.00	0.00	3.33	0.00	0.00	4.00	2.00	0.00	4.00	0.00	2.22	1.22	0.00	4.17	3.70	2.56	0.00	4.17	4.17	0.005064	0.163838
N	jcn_only_AD	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2800739-2802525;chr18:2799382-2802525	chr18:2800735-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		0.00	0.00	3.23	NA	0.00	0.00	0.00	4.41	0.00	0.00	0.00	0.00	5.00	0.00	5.41	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	1.14	3.70	0.00	0.00	3.57	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.57	0.802678	0.908253
N	cassette	PHAX	chr5	+	chr5:125944177-125960266	chr5:125944177-125952941;chr5:125953026-125960266		chr5:125952942-125953025			100.00	NA	95.65	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	CLDND1,DALRD3	chr3	-	chr3:49053141-49053251	chr3:49053141-49053236		chr3:49053237-49053251	chr3:49053251-49053252		85.29	93.86	77.27	90.38	92.31	86.27	94.44	NA	90.91	NA	80.00	NA	90.32	90.91	85.00	100.00	100.00	NA	85.06	93.33	81.03	100.00	90.91	NA	93.06	79.17	78.72	84.21	91.30	72.22	83.33	86.05	91.18	90.32	83.78	95.24	92.12	85.29	-6.83	0.141264	0.556505
K	intron_retention		chr12	-	chr12:50185835-50186228				chr12:50185834-50185835;chr12:50186228-50186229		19.23	14.29	13.33	NA	12.50	NA	10.71	15.38	0.00	NA	17.65	NA	14.63	15.15	16.67	16.67	20.69	NA	9.52	19.23	9.52	NA	22.22	NA	16.13	14.63	23.08	NA	26.32	NA	9.38	11.54	6.25	14.29	17.65	13.33	12.50	15.27	2.77	0.812880	1.000000
K	intron_retention	AGAP3	chr7	+	chr7:150814865-150815296				chr7:150814864-150814865;chr7:150815296-150815297		2.90	0.00	6.57	5.26	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	4.17	0.00	1.75	2.26	2.63	0.00	5.56	3.41	0.00	0.00	0.00	8.82	5.95	10.00	3.77	3.85	2.27	0.00	3.54	3.54	0.908747	1.000000
K	jcn_only_AA	NIT1	chr1	+	chr1:161089179-161089298	chr1:161089179-161089282		chr1:161089283-161089298	chr1:161089298-161089299		0.00	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	13.33	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr10	+	chr10:22607643-22607734				chr10:22607642-22607643;chr10:22607734-22607735		14.71	15.85	19.75	6.67	9.86	0.00	1.54	10.53	0.00	0.00	0.00	0.00	2.08	5.00	5.00	0.00	1.79	0.00	10.81	13.33	9.59	23.53	7.95	14.29	0.00	19.23	18.42	0.00	7.89	6.25	27.27	16.67	3.66	12.50	19.30	18.75	2.87	14.02	11.15	0.170407	1.000000
K	intron_retention		chr5	-	chr5:179306198-179306627				chr5:179306197-179306198;chr5:179306627-179306628		6.90	17.65	12.50	NA	NA	NA	0.00	1.67	3.23	0.00	0.00	0.00	2.86	5.00	3.23	4.26	0.72	0.00	NA	5.88	NA	NA	17.07	0.00	0.00	9.09	16.67	7.69	12.90	NA	NA	16.67	NA	17.24	13.56	8.00	1.43	5.88	4.45	0.898701	1.000000
N	alternative_first_exon		chr19	-	chr19:1880115-1881260;chr19:1880115-1885350	chr19:1880115-1881233	chr19:1885351-1885546	chr19:1881234-1881803			97.14	100.00	95.18	94.74	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	100.00	100.00	100.00	100.00	98.78	100.00	100.00	100.00	98.46	100.00	100.00	98.15	97.47	97.87	98.62	96.67	97.06	97.10	97.89	100.00	100.00	98.36	99.70	99.08	-0.62	0.393626	0.553149
N	alternative_acceptor	BCKDK	chr16	+	chr16:31122083-31122411	chr16:31122083-31122231		chr16:31122232-31122411	chr16:31122411-31122412		2.86	0.00	9.09	0.00	6.06	NA	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	4.55	2.44	4.44	4.17	6.25	14.29	0.00	3.57	8.62	3.33	4.44	0.00	6.25	8.00	16.67	4.76	7.32	0.00	0.00	2.65	2.65	0.737008	0.902878
K	intron_retention	SH3GL1	chr19	-	chr19:4363471-4363716				chr19:4363470-4363471;chr19:4363716-4363717		3.12	0.00	1.82	NA	2.00	NA	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	YME1L1	chr10	-	chr10:27400817-27401010				chr10:27400816-27400817;chr10:27401010-27401011		96.30	89.83	94.25	91.67	92.86	89.26	94.92	96.52	95.35	100.00	97.67	94.12	100.00	92.86	92.50	92.65	100.00	92.16	96.15	98.94	98.73	100.00	96.88	92.86	76.32	91.82	91.46	96.55	97.96	95.65	100.00	96.74	95.06	91.43	91.40	92.00	94.99	96.41	1.42	0.519488	1.000000
K	intron_retention	SSNA1	chr9	+	chr9:140083718-140084258				chr9:140083717-140083718;chr9:140084258-140084259		3.53	2.73	6.17	1.22	2.05	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	2.63	0.00	0.78	0.00	1.79	1.52	2.17	2.08	2.48	5.56	2.13	0.00	2.44	0.00	2.83	1.69	2.99	4.50	3.57	3.17	2.73	2.70	1.96	1.52	-0.44	0.526527	1.000000
N	alternative_donor	SUN2	chr22	-	chr22:50944643-50944798	chr22:50944643-50944713		chr22:50944714-50944798	chr22:50944798-50944799		89.66	100.00	100.00	NA	NA	NA	100.00	93.62	93.94	95.65	100.00	100.00	91.67	95.45	94.29	100.00	100.00	88.24	NA	92.00	NA	NA	92.00	85.71	100.00	87.50	87.50	100.00	94.44	90.00	90.48	95.00	NA	93.33	100.00	100.00	100.00	91.24	-8.76	0.043335	0.375646
K	alternative_donor	RPS15A	chr16	-	chr16:18800441-18801218;chr16:18800441-18801565	chr16:18800441-18801631		chr16:18801219-18801565;chr16:18801566-18801631	chr16:18801565-18801566;chr16:18801631-18801632		84.78	90.28	83.15	84.66	88.52	87.88	91.75	85.00	86.30	93.68	94.25	93.16	92.43	81.33	84.04	90.76	95.07	94.40	88.78	79.69	89.16	85.42	88.54	89.15	89.09	78.57	84.12	88.44	89.18	87.50	79.75	81.13	85.89	82.48	84.80	85.65	89.69	80.54	-9.15	0.000273	0.051161
K	alternative_acceptor	SF1	chr11	-	chr11:64532991-64534371	chr11:64533628-64534371		chr11:64532991-64533627	chr11:64532990-64532991		35.09	37.50	38.46	53.33	39.68	88.46	34.57	30.65	32.14	41.67	33.58	31.11	30.49	29.31	30.63	37.90	38.02	34.15	63.16	34.69	43.90	34.33	37.36	33.33	60.00	36.73	36.26	30.65	37.18	43.24	42.50	48.57	76.00	35.94	36.23	34.92	48.75	34.89	-13.86	0.098490	0.598353
K	intron_retention		chr11	+	chr11:60150762-60152560				chr11:60150761-60150762;chr11:60152560-60152561		2.31	0.00	7.69	0.00	0.00	NA	1.82	0.74	0.00	0.00	1.10	0.00	1.67	0.00	0.00	0.00	0.72	0.00	0.00	1.17	0.00	0.00	2.02	0.00	NA	2.04	4.17	4.35	5.08	0.00	1.49	0.00	0.00	19.15	9.52	0.00	0.00	1.33	1.33	0.496657	1.000000
K	intron_retention		chr3	+	chr3:127396407-127396518				chr3:127396406-127396407;chr3:127396518-127396519		22.73	18.75	24.49	4.76	10.34	4.76	0.00	0.00	0.00	0.00	0.00	0.00	6.25	5.45	21.21	0.00	7.14	NA	17.78	22.58	17.86	23.08	15.91	0.00	23.75	12.90	21.57	10.53	7.55	0.00	26.19	29.55	29.55	21.43	17.14	15.38	18.27	17.74	-0.53	0.993957	1.000000
K	jcn_only_AA	BAP1	chr3	-	chr3:52436888-52437153	chr3:52436957-52437153		chr3:52436888-52436956	chr3:52436887-52436888		0.00	0.00	0.00	NA	14.29	NA	6.52	10.53	8.11	2.86	10.00	10.34	6.12	6.06	2.08	5.41	7.69	0.00	0.00	0.00	0.00	0.00	12.50	4.35	NA	3.57	0.00	5.88	8.70	7.69	0.00	4.17	NA	0.00	3.70	5.41	3.06	1.78	-1.28	0.939203	0.980174
K	intron_retention	SF3A2	chr19	+	chr19:2246802-2246880				chr19:2246801-2246802;chr19:2246880-2246881		5.13	10.17	4.35	NA	4.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	12.90	10.81	0.00	7.14	4.55	4.35	0.00	4.17	0.00	0.00	3.85	3.23	16.22	17.39	25.93	2.86	7.32	4.08	5.08	4.65	-0.43	0.916793	1.000000
K	jcn_only_AA	NADSYN1,NDUFV1	chr11	+	chr11:67378679-67378992;chr11:67378679-67378947	chr11:67378679-67378873		chr11:67378874-67378947;chr11:67378948-67378992	chr11:67378947-67378948;chr11:67378992-67378993		100.00	99.55	100.00	98.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.88	95.68	100.00	100.00	100.00	95.11	100.00	100.00	100.00	100.00	100.00	92.31	98.48	97.69	100.00	100.00	100.00	99.78	100.00	0.22	0.622306	0.831732
N	alternative_donor	FCGR2A	chr1	+	chr1:161479530-161479609;chr1:161476451-161479609;chr1:161476498-161479609	chr1:161476382-161479609		chr1:161476382-161476450;chr1:161476451-161476497;chr1:161476498-161479529	chr1:161476381-161476382;chr1:161476450-161476451;chr1:161476497-161476498		99.25	97.50	99.03	88.89	100.00	68.18	100.00	99.79	99.16	96.77	100.00	95.29	99.62	99.42	100.00	99.04	100.00	95.85	100.00	99.14	97.01	98.52	99.28	97.12	90.00	99.45	99.69	98.68	100.00	98.10	100.00	99.31	94.44	99.50	100.00	97.60	98.56	99.44	0.88	0.176566	0.563271
K	intron_retention		chr6	-	chr6:109766199-109766399				chr6:109766198-109766199;chr6:109766399-109766400		3.75	0.00	4.62	0.00	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.71	0.00	0.94	0.00	0.90	0.86	6.25	0.00	0.90	3.33	1.60	1.39	0.69	0.00	3.92	0.00	0.34	0.43	0.09	0.846934	1.000000
N	alternative_donor	SNX3	chr6	-	chr6:108544250-108581963;chr6:108544250-108582029	chr6:108544250-108582011		chr6:108581964-108582011;chr6:108582012-108582029	chr6:108582011-108582012;chr6:108582029-108582030		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.373901	0.650093
K	jcn_only_AD	KDM5C	chrX	-	chrX:53222819-53222963	chrX:53222819-53222954		chrX:53222955-53222963	chrX:53222963-53222964		42.31	54.76	44.44	26.67	42.42	50.00	48.15	39.02	44.68	40.74	45.95	33.33	52.78	51.16	38.30	45.00	38.46	36.84	21.43	50.00	40.00	52.17	33.33	36.00	53.33	48.84	38.98	42.31	44.44	40.00	29.41	36.67	45.00	43.75	47.62	47.30	50.47	45.58	-4.89	0.699805	0.845069
N	jcn_only_AD		chr1	-	chr1:161019125-161019384	chr1:161019125-161019213		chr1:161019214-161019384	chr1:161019384-161019385		85.00	87.50	88.79	NA	92.86	NA	90.18	89.80	92.11	100.00	91.11	NA	90.13	93.45	87.25	87.10	91.25	NA	91.30	88.00	100.00	90.00	89.06	NA	78.85	85.96	90.62	87.10	94.12	NA	77.42	77.78	76.19	79.17	84.88	100.00	88.81	86.98	-1.84	0.797029	0.905153
N	jcn_only_AA	ATP6V0A1	chr17	+	chr17:40666479-40666561;chr17:40666479-40673044	chr17:40666479-40668789		chr17:40666562-40668789;chr17:40668790-40673044	chr17:40668789-40668790;chr17:40673044-40673045		26.19	9.52	26.32	NA	12.50	NA	5.88	10.34	23.08	0.00	0.00	NA	5.80	13.04	27.27	13.33	3.90	NA	NA	22.58	30.00	23.08	0.00	30.00	43.75	37.50	11.11	25.00	0.00	NA	30.77	20.00	NA	15.69	12.00	15.79	7.70	24.38	16.68	0.516295	0.760908
N	intron_retention	NAGK	chr2	+	chr2:71300725-71303733				chr2:71300724-71300725;chr2:71303733-71303734		54.84	64.44	64.71	NA	75.00	NA	NA	66.67	NA	NA	NA	NA	NA	50.00	NA	NA	NA	NA	61.54	59.09	63.64	NA	71.43	NA	100.00	71.43	100.00	78.57	100.00	75.00	25.00	NA	45.95	53.85	73.33	52.94	62.99	56.97	-6.02	0.835024	1.000000
K	alternative_first_exon	C18orf32,RPL17-C18orf32	chr18	-	chr18:47010142-47013121;chr18:47010142-47015728;chr18:47010142-47012802;chr18:47010142-47014869	chr18:47010142-47013576,chr18:47010142-47013412	chr18:47015729-47015920;chr18:47012803-47012983;chr18:47014870-47014936	chr18:47013577-47013601			93.75	89.47	87.50	NA	88.24	NA	96.77	97.83	96.25	97.50	94.20	96.88	94.37	96.49	95.00	90.70	96.83	96.43	NA	93.75	88.89	80.00	89.19	85.00	NA	96.00	89.66	94.44	92.00	100.00	86.11	83.33	72.73	92.31	89.74	87.10	91.92	94.88	2.95	0.381723	0.552368
N	alternative_donor	PHPT1	chr9	+	chr9:139744026-139744464	chr9:139744043-139744464		chr9:139744026-139744042	chr9:139744025-139744026		100.00	100.00	100.00	98.78	98.35	100.00	98.15	100.00	97.73	96.00	97.85	100.00	98.06	90.48	96.83	96.15	95.06	100.00	98.76	100.00	96.61	100.00	97.87	98.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	97.59	100.00	96.59	99.17	98.46	100.00	1.54	0.685423	0.866509
K	cassette	SRRT	chr7	+	chr7:100485765-100486094	chr7:100485765-100485898;chr7:100486005-100486094		chr7:100485899-100486004			94.12	100.00	100.00	95.00	94.51	95.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	88.46	86.96	NA	95.45	100.00	98.36	100.00	92.45	100.00	95.40	100.00	100.00	100.00	100.00	93.10	95.83	100.00	95.76	96.43	97.37	93.33	97.88	100.00	2.12	0.713433	0.897576
K	intron_retention		chr5	-	chr5:176938929-176939096				chr5:176938928-176938929;chr5:176939096-176939097		3.23	0.89	2.27	1.52	0.84	0.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	4.35	2.84	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	6.45	5.28	2.44	0.00	0.00	0.45	1.61	1.17	0.810283	1.000000
N	alternative_donor	PYGL	chr14	-	chr14:51387786-51390686	chr14:51387786-51390671		chr14:51390672-51390686	chr14:51390686-51390687		9.23	0.00	4.40	NA	5.26	NA	2.20	NA	0.00	2.04	1.06	2.90	5.70	11.54	0.00	7.55	2.99	2.41	NA	5.88	NA	0.00	1.54	2.08	NA	9.09	7.04	11.11	2.74	0.00	NA	5.26	7.69	0.00	1.12	2.53	3.95	9.16	5.21	0.057541	0.421157
N	jcn_only_AA	MYO9B	chr19	+	chr19:17213368-17253329;chr19:17213368-17256206	chr19:17213368-17214066		chr19:17214067-17253329;chr19:17253330-17256206	chr19:17253329-17253330;chr19:17256206-17256207		0.00	0.00	0.00	NA	NA	NA	1.98	1.22	0.00	4.08	3.11	3.41	2.67	0.00	2.04	10.94	1.29	2.00	0.00	0.00	NA	4.00	0.00	2.27	0.00	0.00	0.00	14.81	13.51	29.41	0.00	0.00	NA	1.20	0.00	0.90	0.00	0.00	0.00	0.290305	0.663989
N	jcn_only_AD	SBNO2	chr19	-	chr19:1108704-1108777;chr19:1108704-1108785	chr19:1108704-1108781		chr19:1108778-1108781;chr19:1108782-1108785	chr19:1108781-1108782;chr19:1108785-1108786		5.56	0.00	6.09	2.86	0.00	9.71	0.00	2.44	4.72	5.26	0.00	4.65	0.00	3.03	7.08	7.34	5.26	8.33	0.00	4.72	5.11	3.75	10.00	4.13	19.05	7.14	5.70	7.69	0.00	6.98	6.02	6.55	9.38	0.00	0.00	6.40	0.00	5.14	5.14	0.981673	0.993198
K	alternative_donor	SLIRP	chr14	+	chr14:78177224-78182114	chr14:78177240-78182114		chr14:78177224-78177239	chr14:78177223-78177224		96.15	98.48	97.37	98.41	97.70	97.80	98.39	90.91	94.23	100.00	97.14	95.92	95.89	92.31	96.67	94.85	95.45	96.55	95.16	96.00	94.74	94.44	100.00	100.00	98.98	93.33	100.00	94.74	96.00	100.00	96.15	94.59	94.24	97.62	98.15	95.45	97.14	94.66	-2.48	0.053806	0.406807
K	alternative_acceptor	NOSIP	chr19	-	chr19:50062231-50063190	chr19:50062236-50063190		chr19:50062231-50062235	chr19:50062230-50062231		97.56	91.36	98.46	92.86	94.83	97.56	100.00	98.63	100.00	100.00	97.50	100.00	97.22	100.00	100.00	100.00	100.00	100.00	96.15	98.68	95.70	100.00	100.00	100.00	90.70	95.60	97.37	100.00	97.73	97.67	92.17	94.62	92.05	100.00	100.00	95.35	94.10	98.09	4.00	0.219841	0.671511
N	cassette	FCGRT	chr19	+	chr19:50016731-50017467;chr19:50016731-50027763;chr19:50010182-50027763	chr19:50016731-50017138,chr19:50010182-50017138;chr19:50017391-50017467,chr19:50017391-50027763		chr19:50017139-50017390			99.18	95.48	100.00	97.92	96.92	95.00	98.90	99.22	100.00	98.29	98.53	98.22	98.73	99.09	99.61	98.33	96.75	97.17	97.47	99.63	97.70	97.24	97.48	98.44	97.36	98.95	99.34	97.84	98.66	98.17	98.80	99.04	96.27	97.05	97.48	97.24	97.41	99.14	1.72	0.021880	0.396422
K	cassette	STARD10	chr11	-	chr11:72466799-72469574	chr11:72466799-72468811;chr11:72468930-72469574		chr11:72468812-72468929			100.00	96.59	100.00	94.59	93.75	94.64	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	96.25	88.89	93.88	85.71	94.87	100.00	97.27	93.75	96.77	83.33	91.18	100.00	92.00	95.35	96.25	86.96	100.00	100.00	96.42	92.88	-3.55	0.299704	0.709176
K	alternative_acceptor	ACD	chr16	-	chr16:67691932-67692457	chr16:67692266-67692457		chr16:67691932-67692265	chr16:67691931-67691932		91.43	100.00	89.19	93.75	94.74	96.43	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	NA	85.42	90.48	94.44	90.91	95.24	90.00	97.44	100.00	100.00	NA	94.74	100.00	100.00	96.97	93.48	92.86	94.74	96.00	98.72	95.72	-3.00	0.854670	0.947480
K	cassette	CCNL2	chr1	-	chr1:1323446-1324329;chr1:1323446-1325609	chr1:1323446-1324005;chr1:1324124-1324329,chr1:1324124-1325609		chr1:1324006-1324123			2.27	0.00	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	2.50	0.00	1.16	0.00	0.00	5.13	0.00	0.00	0.00	2.08	2.08	4.26	0.00	0.00	1.20	1.25	0.00	2.08	2.08	0.114994	0.709176
N	alternative_acceptor	CPNE1	chr20	-	chr20:34214723-34215201;chr20:34214726-34215201;chr20:34214775-34215201	chr20:34214749-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		5.81	3.66	2.38	4.17	6.10	6.00	2.13	0.00	0.00	0.00	0.00	0.00	5.00	5.26	7.32	3.70	0.00	0.00	5.08	3.33	4.29	12.90	6.78	6.90	4.30	4.00	1.59	7.41	6.12	6.00	9.52	7.14	4.55	8.33	5.71	6.06	4.42	4.63	0.21	0.707583	0.890280
K	alternative_donor	TTYH3	chr7	+	chr7:2671913-2686486	chr7:2685521-2686486		chr7:2671913-2685520	chr7:2671912-2671913		3.85	10.71	4.40	NA	NA	NA	0.51	1.14	1.19	0.36	0.63	0.00	1.04	0.75	2.38	0.87	0.78	0.00	NA	3.92	NA	4.08	3.11	2.70	30.77	3.53	1.85	1.72	2.74	0.00	3.45	2.50	15.38	4.35	4.20	1.64	10.71	3.49	-7.22	0.184389	0.563271
N	jcn_only_AD	SIGLEC9	chr19	+	chr19:51631426-51631670;chr19:51631297-51631670	chr19:51631433-51631670		chr19:51631297-51631425;chr19:51631426-51631432	chr19:51631296-51631297;chr19:51631425-51631426		0.00	0.00	4.48	0.00	3.03	0.00	0.00	0.00	7.50	4.62	2.40	8.16	0.00	3.75	4.35	0.72	0.00	0.00	1.16	0.00	0.00	6.38	0.00	6.90	0.00	0.00	0.00	4.55	2.31	0.00	4.55	0.00	0.00	0.00	4.05	6.25	0.00	0.00	0.00	0.239475	0.657607
K	intron_retention	GAS5	chr1	-	chr1:173833645-173833812				chr1:173833644-173833645;chr1:173833812-173833813		8.70	4.08	6.82	7.69	6.15	4.35	3.33	NA	4.17	8.33	11.67	0.00	7.81	NA	1.82	10.14	18.18	NA	3.98	17.65	2.97	16.85	12.03	17.24	2.68	0.00	7.55	11.36	11.46	10.26	24.39	14.52	5.08	12.36	9.47	12.68	4.03	13.17	9.14	0.377325	1.000000
N	intron_retention		chr1	-	chr1:153949252-153949814				chr1:153949251-153949252;chr1:153949814-153949815		92.31	95.27	91.49	100.00	95.05	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	92.54	94.87	95.00	94.00	100.00	100.00	100.00	96.00	100.00	97.62	100.00	79.22	84.33	77.55	95.35	84.62	95.31	97.63	96.27	-1.36	0.980354	1.000000
N	jcn_only_AD	CSE1L	chr20	+	chr20:47710824-47711268	chr20:47711152-47711268		chr20:47710824-47711151	chr20:47710823-47710824		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.88	0.00	6.25	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	GADD45B	chr19	+	chr19:2476401-2476526				chr19:2476400-2476401;chr19:2476526-2476527		3.33	0.00	0.00	0.64	0.00	0.55	0.00	0.00	0.00	0.16	0.00	0.15	NA	0.00	0.00	0.25	0.00	0.20	0.00	3.96	1.75	2.24	4.17	1.91	NA	0.00	3.90	1.23	0.00	1.02	5.20	4.32	0.00	2.42	3.85	1.39	0.00	1.67	1.67	0.176461	1.000000
K	intron_retention	PSMA3	chr14	+	chr14:58724565-58724642				chr14:58724564-58724565;chr14:58724642-58724643		0.86	0.00	3.19	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.55	1.94	2.33	1.31	1.64	0.00	0.68	0.00	0.00	0.72	0.00	8.00	5.48	5.77	1.69	1.59	0.66	0.00	0.77	0.77	0.791110	1.000000
N	alternative_acceptor	AES	chr19	-	chr19:3053457-3056309;chr19:3055939-3056309	chr19:3055725-3056309		chr19:3053457-3055724;chr19:3055725-3055938	chr19:3053456-3053457;chr19:3055724-3055725		94.24	94.41	100.00	100.00	92.13	91.96	100.00	95.92	92.37	100.00	96.88	95.18	96.43	92.35	96.15	95.89	100.00	95.00	90.85	92.39	90.58	100.00	92.42	100.00	88.75	95.78	92.68	100.00	100.00	92.68	91.49	92.98	90.68	100.00	89.86	96.15	92.63	93.31	0.69	0.928846	0.978996
N	intron_retention		chr22	-	chr22:50964348-50964674				chr22:50964347-50964348;chr22:50964674-50964675		100.00	100.00	100.00	100.00	88.89	96.49	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	98.08	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.43	100.00	NA	100.00	100.00	100.00	0.00	0.629122	1.000000
N	coord_cassette	ATP5F1	chr1	+	chr1:111992496-111999251	chr1:111992496-111996832;chr1:111996979-111998707;chr1:111998872-111999251		chr1:111996833-111996978;chr1:111998708-111998871			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.19	100.00	91.30	95.65	96.88	98.32	100.00	99.18	100.00	100.00	0.00	0.951872	0.972993
N	cassette	FDPS	chr1	+	chr1:155278757-155279854;chr1:155278868-155279833;chr1:155278757-155279833;chr1:155278868-155279854	chr1:155278757-155279579,chr1:155278868-155279579;chr1:155279757-155279833,chr1:155279757-155279854		chr1:155279580-155279756			3.57	2.70	0.00	NA	0.00	NA	7.96	6.45	5.97	4.48	3.81	4.76	5.34	0.00	5.94	3.39	1.19	2.22	0.00	0.00	4.76	0.00	2.22	0.00	NA	0.00	1.85	5.26	2.50	0.00	0.00	2.44	0.00	2.50	0.00	4.76	2.70	0.00	-2.70	0.447629	0.750082
N	alternative_acceptor	MCOLN1	chr19	+	chr19:7594599-7595171;chr19:7594599-7595255	chr19:7594599-7595320		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		15.22	12.33	14.81	11.76	9.52	25.00	12.82	5.26	9.09	19.40	25.93	20.00	19.51	12.50	10.00	22.06	25.00	31.15	17.19	14.71	24.14	19.05	17.54	0.00	6.98	8.00	8.00	16.00	19.40	18.18	20.00	11.54	22.06	17.24	19.44	14.29	15.01	13.61	-1.40	0.435840	0.746774
N	alternative_acceptor	CUEDC2	chr10	-	chr10:104183617-104183752	chr10:104183639-104183752		chr10:104183617-104183638	chr10:104183616-104183617		3.36	6.25	4.85	2.22	4.12	8.20	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	3.28	1.82	2.80	5.56	3.16	0.00	5.00	3.33	3.12	2.13	2.50	4.69	4.31	4.40	3.15	2.00	2.90	7.25	3.21	2.58	-0.64	0.418245	0.732454
N	alternative_acceptor	MS4A7	chr11	+	chr11:60160260-60164034;chr11:60160260-60161259;chr11:60160260-60161301;chr11:60160260-60162423	chr11:60160260-60162418		chr11:60161260-60161301;chr11:60161302-60162418;chr11:60162419-60162423;chr11:60162424-60164034	chr11:60161301-60161302;chr11:60162418-60162419;chr11:60162423-60162424;chr11:60164034-60164035		2.14	0.88	1.74	4.55	1.75	0.00	0.54	1.72	2.63	4.08	0.00	1.32	0.97	0.85	NA	3.33	0.00	0.00	6.31	4.71	0.00	5.88	2.84	3.92	0.00	2.29	0.00	0.00	3.14	4.76	1.64	1.16	2.94	2.73	0.56	3.51	0.93	1.93	1.01	0.802927	0.926369
K	jcn_only_AD	TMEM208	chr16	+	chr16:67262740-67262878	chr16:67262785-67262878		chr16:67262740-67262784	chr16:67262739-67262740		98.39	97.52	100.00	98.02	98.40	96.95	97.37	100.00	97.37	96.08	98.04	93.94	98.80	100.00	97.59	99.00	98.61	97.50	98.06	96.92	97.47	100.00	97.73	95.83	100.00	96.88	98.31	96.43	96.83	95.83	96.91	95.88	96.28	97.01	97.56	97.98	97.79	97.66	-0.13	0.830741	0.923322
K	intron_retention		chr11	-	chr11:72397237-72398483				chr11:72397236-72397237;chr11:72398483-72398484		4.21	4.32	5.88	1.74	5.41	3.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	1.44	0.00	0.00	0.00	2.81	2.68	1.81	3.60	4.62	3.37	6.04	1.54	3.37	1.63	3.04	1.46	1.85	4.35	2.91	3.23	4.80	4.35	2.86	1.70	-1.17	0.791959	1.000000
K	intron_retention	GDI1	chrX	+	chrX:153670603-153670720				chrX:153670602-153670603;chrX:153670720-153670721		1.69	0.00	1.75	1.39	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	1.45	2.65	0.00	1.10	0.00	2.08	2.01	0.00	0.00	2.11	0.00	3.28	3.70	7.32	0.64	1.36	0.49	0.98	1.57	0.59	0.987458	1.000000
K	cassette	ARFRP1	chr20	-	chr20:62332055-62333487	chr20:62332055-62333181;chr20:62333251-62333487		chr20:62333182-62333250			85.00	100.00	85.19	86.96	86.67	85.71	100.00	100.00	95.74	93.55	100.00	NA	100.00	100.00	93.75	94.74	100.00	NA	NA	88.89	100.00	86.67	94.12	90.48	NA	100.00	95.65	100.00	92.86	94.44	86.67	95.83	78.57	100.00	100.00	90.24	100.00	94.44	-5.56	0.850837	0.950337
N	jcn_only_AA	XPC	chr3	-	chr3:14188169-14188789;chr3:14187114-14188789	chr3:14187660-14188789		chr3:14187114-14187659;chr3:14187660-14188168	chr3:14187113-14187114;chr3:14187659-14187660		89.29	100.00	98.36	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.00	100.00	100.00	95.00	100.00	100.00	0.00	0.541126	0.778326
N	jcn_only_AA	ACAA1	chr3	-	chr3:38167833-38168000	chr3:38167844-38168000		chr3:38167833-38167843	chr3:38167832-38167833		0.00	0.00	7.69	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	4.29	NA	0.00	NA	0.00	0.00	9.52	10.53	0.00	9.52	12.50	0.00	11.76	0.00	11.11	0.00	0.00	0.00	0.00	0.502276	0.756128
K	intron_retention	RPS6KB2	chr11	+	chr11:67200129-67200207				chr11:67200128-67200129;chr11:67200207-67200208		0.00	5.77	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.71	7.69	4.17	0.00	2.44	0.00	0.00	0.00	0.00	0.541979	1.000000
N	cassette	CMC2	chr16	-	chr16:81010077-81030918;chr16:81010077-81040338;chr16:81014485-81030918	chr16:81010077-81015410,chr16:81014485-81015410;chr16:81015483-81030918,chr16:81015483-81040338		chr16:81015411-81015482			83.02	100.00	85.71	93.75	100.00	100.00	89.58	93.85	93.59	97.87	96.08	96.15	95.65	97.01	93.55	95.08	98.21	97.96	92.86	95.24	88.37	100.00	100.00	96.55	100.00	94.74	88.24	100.00	97.83	96.43	85.37	85.42	91.67	95.35	100.00	94.12	94.25	94.29	0.04	0.278706	0.709176
K	intron_retention	SYMPK	chr19	-	chr19:46327134-46328428				chr19:46327133-46327134;chr19:46328428-46328429		0.00	4.76	6.98	10.00	4.17	18.18	0.00	0.00	0.00	9.09	0.00	9.09	0.00	0.00	0.00	3.70	0.00	0.00	8.70	4.35	2.78	9.09	7.14	7.14	3.03	5.56	4.00	4.17	4.76	0.00	10.53	3.92	16.00	4.55	7.69	5.88	3.89	2.17	-1.72	0.828344	1.000000
N	cassette	IRF5	chr7	+	chr7:128587111-128587782	chr7:128587111-128587390;chr7:128587590-128587782		chr7:128587391-128587589			90.48	100.00	NA	NA	90.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	99.12	99.04	100.00	96.67	NA	94.25	91.67	96.19	100.00	97.30	100.00	98.28	97.18	100.00	98.08	95.65	83.33	96.15	100.00	98.02	100.00	97.69	-2.31	0.967107	0.991515
N	jcn_only_AD	E4F1	chr16	+	chr16:2285003-2285081;chr16:2284990-2285081;chr16:2284973-2285081;chr16:2284966-2285081	chr16:2284951-2285081		chr16:2284951-2284965;chr16:2284966-2284972;chr16:2284973-2284989;chr16:2284990-2285002	chr16:2284950-2284951;chr16:2284965-2284966;chr16:2284972-2284973;chr16:2284989-2284990		3.70	0.00	0.00	4.17	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	5.88	0.00	1.75	0.00	0.00	0.00	0.00	1.85	1.85	0.244275	0.657607
N	jcn_only_AD	PSTPIP1	chr15	+	chr15:77320256-77320894	chr15:77320313-77320894		chr15:77320256-77320312	chr15:77320255-77320256		0.00	2.65	0.00	NA	0.00	NA	0.00	NA	7.14	NA	3.33	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	2.44	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr7	-	chr7:25163469-25163569				chr7:25163468-25163469;chr7:25163569-25163570		0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	6.76	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	MOV10	chr1	+	chr1:113242933-113243037	chr1:113242963-113243037		chr1:113242933-113242962	chr1:113242932-113242933		95.69	100.00	100.00	100.00	100.00	98.32	100.00	96.34	96.00	NA	NA	100.00	100.00	94.79	95.77	NA	NA	100.00	100.00	98.33	98.39	NA	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	95.42	100.00	100.00	100.00	100.00	97.09	100.00	96.02	-3.98	0.002475	0.124802
N	jcn_only_AA		chr14	+	chr14:53187909-53190522;chr14:53187909-53190476;chr14:53187909-53190666	chr14:53187909-53190682		chr14:53190477-53190522;chr14:53190523-53190666;chr14:53190667-53190682	chr14:53190522-53190523;chr14:53190666-53190667;chr14:53190682-53190683		99.01	100.00	94.90	97.14	98.06	97.44	100.00	100.00	98.80	100.00	100.00	100.00	100.00	100.00	99.09	99.29	100.00	100.00	96.34	96.33	100.00	95.51	96.72	96.55	100.00	100.00	100.00	100.00	100.00	100.00	96.39	95.28	95.12	98.58	98.00	97.54	100.00	99.50	-0.50	0.970138	0.989156
K	jcn_only_AA	FAM195B	chr17	-	chr17:79781188-79782162	chr17:79781390-79782162		chr17:79781188-79781389	chr17:79781187-79781188		100.00	97.06	94.64	87.36	93.64	92.62	98.26	100.00	96.43	97.32	97.52	96.04	99.16	96.00	100.00	94.78	97.97	95.88	100.00	95.56	97.44	94.12	96.75	94.67	100.00	96.00	95.24	93.02	95.41	96.03	100.00	97.92	98.13	95.38	94.03	96.09	98.71	98.00	-0.71	0.445080	0.708820
N	alternative_last_exon	SCAF11	chr12	-	chr12:46353998-46355482,chr12:46345472-46355482,chr12:46347641-46355482;chr12:46328289-46355482;chr12:46355106-46355482;chr12:46345511-46355482	chr12:46349976-46355482	chr12:46328230-46328288;chr12:46354238-46355105;chr12:46345433-46345510	chr12:46348517-46349975			0.00	12.50	4.17	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	3.03	0.00	NA	0.00	NA	0.00	0.00	0.00	58.33	0.00	0.00	0.00	8.33	10.00	0.00	7.14	NA	5.56	4.35	5.26	6.25	0.00	-6.25	0.291223	0.491468
K	alternative_donor	CNBP	chr3	-	chr3:128890382-128890497;chr3:128890382-128890476	chr3:128890382-128890494		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		2.82	0.00	1.47	6.67	2.17	NA	2.60	2.94	2.28	1.71	3.01	0.00	2.12	1.11	2.20	3.62	3.45	3.85	NA	1.10	4.76	2.00	2.58	1.27	NA	1.61	4.11	2.53	3.17	4.17	1.43	2.43	0.00	2.26	1.96	1.74	1.06	1.52	0.46	0.436773	0.698333
K	intron_retention	SLC2A3	chr12	-	chr12:8072125-8072261				chr12:8072124-8072125;chr12:8072261-8072262		94.19	100.00	94.76	87.70	85.71	85.22	100.00	100.00	97.14	95.00	92.00	100.00	94.12	100.00	100.00	93.44	100.00	100.00	100.00	96.88	96.77	91.07	92.78	96.97	100.00	100.00	95.07	93.96	94.20	91.11	97.22	97.84	94.00	93.27	92.00	92.86	100.00	98.61	-1.39	0.999759	1.000000
N	alternative_donor	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298130;chr11:57297708-57298199	chr11:57297708-57298195		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		20.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	9.52	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	4.76	4.76	0.219393	0.595046
N	jcn_only_AD	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6919905-6920228;chr17:6920005-6920228;chr17:6920001-6920228	chr17:6919845-6920228		chr17:6919845-6919904;chr17:6919905-6920000;chr17:6920001-6920004	chr17:6919844-6919845;chr17:6919904-6919905;chr17:6920000-6920001		4.00	10.96	6.48	8.33	6.52	4.00	3.95	1.41	3.38	1.47	2.44	1.82	2.47	1.39	2.86	2.63	2.86	1.82	9.65	4.46	7.03	8.62	11.02	10.17	5.37	3.81	4.27	3.70	5.45	3.70	8.04	8.97	9.47	7.53	8.11	6.30	7.42	3.91	-3.51	0.106789	0.646283
K	alternative_acceptor	SDR39U1	chr14	-	chr14:24909699-24909988;chr14:24909615-24909988	chr14:24909808-24909988		chr14:24909615-24909698;chr14:24909699-24909807	chr14:24909614-24909615;chr14:24909698-24909699		16.13	12.12	25.00	25.00	23.53	NA	20.00	27.78	40.00	26.67	11.76	12.50	17.65	16.67	33.33	19.05	24.00	23.08	18.75	21.05	17.86	38.46	27.03	26.32	25.00	21.74	25.00	20.00	21.62	19.23	30.00	20.51	18.75	21.74	22.73	28.00	18.75	21.39	2.64	0.250706	0.707267
N	alternative_acceptor	IFFO1	chr12	-	chr12:6649751-6650677	chr12:6649755-6650677		chr12:6649751-6649754	chr12:6649750-6649751		100.00	92.42	91.30	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	90.70	100.00	100.00	NA	93.18	NA	96.88	100.00	100.00	NA	94.81	NA	100.00	100.00	100.00	100.00	92.65	NA	NA	100.00	94.44	100.00	100.00	NA	95.66	100.00	4.34	0.043735	0.570243
K	intron_retention	TAOK2	chr16	+	chr16:29997826-30000913				chr16:29997825-29997826;chr16:30000913-30000914		48.39	23.08	36.59	NA	36.36	NA	48.00	63.64	61.54	66.67	54.17	78.57	41.67	58.82	71.43	59.09	60.71	72.73	NA	50.00	NA	57.14	44.44	45.45	21.43	43.75	36.67	53.85	56.25	60.00	58.82	32.35	50.00	47.06	43.48	57.69	41.67	54.41	12.74	0.204345	1.000000
N	alternative_acceptor	DAZAP1	chr19	+	chr19:1418731-1421149;chr19:1418731-1419670	chr19:1418731-1421146		chr19:1419671-1421146;chr19:1421147-1421149	chr19:1421146-1421147;chr19:1421149-1421150		60.00	76.47	67.74	NA	50.00	NA	65.71	62.96	61.76	58.33	64.71	63.16	64.62	57.14	68.18	64.44	60.75	62.22	NA	78.57	61.54	68.75	64.71	73.33	NA	72.22	68.00	57.14	70.37	60.00	60.00	60.00	75.00	70.00	77.27	55.56	70.35	61.48	-8.87	0.283339	0.709013
K	intron_retention		chr7	+	chr7:150772596-150772692				chr7:150772595-150772596;chr7:150772692-150772693		3.45	4.04	3.09	4.26	2.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	5.00	0.00	2.11	3.09	2.27	4.49	0.00	4.65	2.20	3.19	1.72	2.47	0.00	3.37	3.66	0.00	1.41	4.23	4.00	1.51	2.16	0.64	0.790796	1.000000
N	jcn_only_AA	IRF5	chr7	+	chr7:102045131-102047884	chr7:102045131-102047880		chr7:102047881-102047884	chr7:102047884-102047885		88.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	TMSB4X	chrX	+	chrX:12993563-12994364				chrX:12993562-12993563;chrX:12994364-12994365		95.83	91.36	100.00	89.19	89.83	93.88	75.00	77.42	83.33	68.00	75.00	62.86	91.11	80.95	92.45	80.00	75.00	80.00	86.67	100.00	86.05	85.71	90.22	91.80	89.36	93.10	92.00	89.13	92.94	85.33	95.29	95.52	92.86	91.76	92.96	94.41	90.23	94.19	3.96	0.710517	1.000000
K	intron_retention	ABCD4	chr14	-	chr14:74753233-74753403				chr14:74753232-74753233;chr14:74753403-74753404		56.25	64.52	55.10	50.00	56.25	37.50	30.23	33.33	50.00	25.00	45.71	6.25	23.81	33.33	48.39	28.57	41.18	7.14	60.22	48.39	39.44	86.67	62.75	53.33	61.80	36.36	46.30	50.00	50.00	37.50	53.45	54.55	57.14	56.00	50.00	48.28	58.68	42.38	-16.30	0.938337	1.000000
K	intron_retention		chr19	+	chr19:41286005-41286289				chr19:41286004-41286005;chr19:41286289-41286290		15.19	35.56	20.63	11.11	9.30	14.29	1.61	0.00	1.20	0.00	1.54	0.00	3.03	0.89	3.37	0.00	4.65	0.00	20.00	8.33	6.00	10.71	11.11	6.06	64.71	8.55	16.90	5.13	9.26	8.57	9.52	18.46	20.00	15.38	15.22	22.73	20.00	8.44	-11.56	0.398579	1.000000
N	alternative_acceptor	HPS1	chr10	-	chr10:100190428-100190887	chr10:100190538-100190887		chr10:100190428-100190537	chr10:100190427-100190428		0.00	0.00	1.72	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.27	0.00	2.08	1.90	0.00	0.00	2.63	0.00	3.57	0.00	0.00	3.45	1.69	0.00	3.03	2.82	1.00	0.00	1.14	1.14	0.998322	1.000000
K	cassette	GUK1	chr1	+	chr1:228328065-228333211	chr1:228328065-228328824;chr1:228329209-228333211		chr1:228328825-228329208			3.91	3.01	4.38	4.35	5.41	2.27	8.81	6.45	7.81	9.45	10.80	9.52	8.82	6.61	6.80	6.33	9.14	10.00	2.72	4.04	4.38	6.45	2.75	7.84	3.80	5.38	3.39	6.17	7.56	4.69	4.24	4.85	2.89	7.53	7.41	5.77	3.40	4.81	1.41	0.943423	0.985246
K	intron_retention		chr11	+	chr11:992686-993283				chr11:992685-992686;chr11:993283-993284		1.82	3.28	7.50	NA	1.33	NA	0.00	0.00	0.00	0.00	0.48	0.00	1.11	0.00	3.03	0.00	0.85	0.00	0.00	0.00	0.00	0.00	2.44	0.00	14.04	5.00	4.00	0.00	2.13	NA	0.00	2.27	2.22	0.00	1.68	0.00	1.67	0.00	-1.67	0.891125	1.000000
N	cassette	TBC1D22A	chr22	+	chr22:47308085-47393529	chr22:47308085-47370185;chr22:47370296-47393529		chr22:47370186-47370295			85.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.97	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	COA6	chr1	+	chr1:234510136-234519468;chr1:234513356-234519468	chr1:234510022-234519468		chr1:234510022-234510135;chr1:234510136-234513355	chr1:234510021-234510022;chr1:234510135-234510136		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.220404	0.595046
K	intron_retention	PIH1D1	chr19	-	chr19:49950725-49951083				chr19:49950724-49950725;chr19:49951083-49951084		6.45	4.26	9.20	2.94	4.35	3.03	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	3.23	0.00	0.00	3.28	3.64	3.97	7.14	4.76	5.00	3.09	2.27	6.33	4.35	2.17	4.00	9.84	15.07	5.51	3.33	6.25	2.17	3.18	2.96	-0.23	0.953997	1.000000
K	cassette	DIABLO,RP11-512M8.5	chr12	-	chr12:122701417-122709191;chr12:122701417-122709058	chr12:122701417-122702812;chr12:122702945-122709058,chr12:122702945-122709191		chr12:122702813-122702944			100.00	100.00	90.20	92.31	95.24	NA	93.10	87.10	95.00	88.10	100.00	100.00	96.43	100.00	100.00	97.83	97.73	100.00	85.71	90.91	90.91	87.50	96.23	94.59	NA	100.00	93.18	100.00	94.87	86.96	91.67	95.92	90.91	93.18	92.00	91.49	93.10	95.84	2.74	0.623757	0.863201
N	jcn_only_AA	CSNK1A1	chr5	-	chr5:148884547-148885045;chr5:148884299-148885045	chr5:148876424-148885045		chr5:148876424-148884298;chr5:148884299-148884546	chr5:148876423-148876424;chr5:148884298-148884299		100.00	100.00	95.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.16	94.12	100.00	94.87	100.00	86.67	100.00	95.35	NA	100.00	96.23	92.31	94.23	100.00	100.00	100.00	100.00	94.20	93.85	98.41	100.00	100.00	0.00	0.363217	0.663989
N	cassette	HAMP	chr19	+	chr19:35773571-35775840	chr19:35773571-35775691;chr19:35775752-35775840		chr19:35775692-35775751			100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AD	CAMKK2,NCOR2	chr12	-	chr12:124821727-124824551	chr12:124821727-124824542		chr12:124824543-124824551	chr12:124824551-124824552		3.70	0.00	6.67	NA	12.50	NA	3.51	0.00	0.00	7.38	3.23	10.00	8.57	0.00	0.00	4.76	5.97	3.12	NA	0.00	NA	0.00	5.97	0.00	0.00	9.68	6.45	8.70	6.15	9.52	NA	10.00	NA	11.43	8.70	3.90	1.75	0.00	-1.75	0.904896	0.953792
N	cassette	MS4A7	chr11	+	chr11:60150762-60164034;chr11:60157070-60162418;chr11:60157070-60161259;chr11:60150762-60162418;chr11:60150762-60161259	chr11:60150762-60160157,chr11:60157070-60160157;chr11:60160260-60162418,chr11:60160260-60161259,chr11:60160260-60164034		chr11:60160158-60160259			93.40	94.74	97.00	85.29	91.60	84.85	91.81	94.08	90.74	79.17	86.47	84.21	92.83	95.17	NA	80.70	80.68	80.43	95.73	96.43	97.50	88.14	91.15	88.51	87.06	95.33	95.59	87.23	86.43	84.09	96.59	100.00	91.18	91.89	96.99	94.32	92.32	95.25	2.93	0.068153	0.623567
K	jcn_only_AD	U2AF2	chr19	+	chr19:56180536-56180809	chr19:56180548-56180809		chr19:56180536-56180547	chr19:56180535-56180536		18.92	20.00	15.17	20.93	19.82	13.33	17.83	13.51	17.36	14.50	12.58	20.00	16.86	15.12	18.06	17.24	15.05	11.86	22.81	26.36	19.05	17.89	16.91	13.76	22.06	12.35	18.06	14.16	18.40	24.32	23.16	20.93	24.00	22.14	14.01	21.68	21.03	17.02	-4.01	0.387818	0.657607
N	jcn_only_AD	MAGED2	chrX	+	chrX:54842112-54842313;chrX:54841209-54842313	chrX:54842124-54842313					86.75	100.00	93.22	100.00	94.83	100.00	100.00	95.92	100.00	97.30	97.22	100.00	100.00	96.47	100.00	100.00	100.00	100.00	94.12	88.14	94.19	100.00	100.00	93.75	100.00	90.74	92.21	100.00	100.00	95.35	88.52	91.67	92.31	100.00	100.00	100.00	100.00	89.63	-10.37	0.014224	0.285457
K	jcn_only_AA	C14orf166	chr14	+	chr14:52468585-52470957	chr14:52468585-52470911		chr14:52470912-52470957	chr14:52470957-52470958		100.00	93.10	97.03	100.00	90.68	85.54	95.61	100.00	100.00	100.00	95.20	100.00	100.00	93.02	96.00	94.87	92.24	94.03	89.26	92.96	90.00	100.00	89.17	88.00	100.00	94.64	93.07	94.87	93.08	90.11	87.50	89.83	86.67	93.59	90.62	95.74	94.35	93.83	-0.52	0.849375	0.939316
K	intron_retention	RIN1	chr11	-	chr11:66100224-66100728				chr11:66100223-66100224;chr11:66100728-66100729		17.24	25.81	NA	NA	6.90	NA	NA	5.26	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	7.69	13.64	14.29	NA	6.25	NA	0.00	6.25	NA	NA	8.33	NA	0.00	NA	5.00	NA	NA	NA	6.35	6.25	-0.10	0.961792	1.000000
K	jcn_only_AA	NACA	chr12	-	chr12:57118308-57118745	chr12:57118334-57118745		chr12:57118308-57118333	chr12:57118307-57118308		0.00	2.78	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.997512	0.999366
N	jcn_only_AD	NXF1	chr11	-	chr11:62566048-62567848	chr11:62566048-62566362		chr11:62566363-62567848	chr11:62567848-62567849		9.30	0.00	2.38	10.00	0.00	NA	0.00	0.00	0.00	4.76	0.00	5.00	0.00	3.23	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	NA	8.11	9.68	0.00	0.00	0.00	0.00	7.27	NA	0.00	5.41	6.56	0.00	1.61	1.61	0.577308	0.789094
N	alternative_donor	MRPL14	chr6	-	chr6:44084367-44095080;chr6:44084367-44093689;chr6:44084367-44094369	chr6:44084367-44094991		chr6:44093690-44094369;chr6:44094370-44094991;chr6:44094992-44095080	chr6:44094369-44094370;chr6:44094991-44094992;chr6:44095080-44095081		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.76	0.00	3.51	16.98	0.00	3.03	8.11	0.00	0.00	11.63	0.00	0.00	0.00	3.57	1.56	0.00	0.00	0.00	0.00	2.44	0.00	8.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	intron_retention		chr12	-	chr12:124105970-124106254				chr12:124105969-124105970;chr12:124106254-124106255		100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.44	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	1.000000	1.000000
K	intron_retention	MCL1	chr1	-	chr1:150550968-150551318				chr1:150550967-150550968;chr1:150551318-150551319		2.62	0.00	3.54	0.00	0.00	0.00	0.00	0.97	0.78	0.53	0.31	1.31	0.00	0.88	1.10	0.47	0.27	1.00	NA	3.07	0.00	2.88	1.04	2.03	0.00	1.97	2.23	1.83	1.67	2.22	8.25	4.28	NA	2.50	4.39	2.30	0.00	2.29	2.29	0.114948	1.000000
N	jcn_only_AD	CYSTM1	chr5	+	chr5:139568768-139574030;chr5:139554789-139574030	chr5:139554871-139574030		chr5:139554789-139554870;chr5:139554871-139568767	chr5:139554788-139554789;chr5:139554870-139554871		98.49	100.00	94.29	100.00	100.00	100.00	100.00	98.39	100.00	97.32	97.30	97.35	97.80	98.30	100.00	100.00	99.36	100.00	100.00	97.75	98.77	100.00	97.26	100.00	100.00	97.86	100.00	100.00	95.18	96.97	98.25	98.33	100.00	100.00	100.00	100.00	100.00	98.28	-1.72	0.008939	0.237005
K	intron_retention	AP2M1	chr3	+	chr3:183900657-183901269				chr3:183900656-183900657;chr3:183901269-183901270		4.80	3.11	6.74	2.36	2.66	2.27	1.09	1.63	2.06	0.68	1.40	0.44	0.94	0.85	3.08	0.60	0.74	0.40	4.14	4.50	3.18	5.73	4.84	3.09	3.73	6.53	6.83	2.72	4.96	2.62	8.88	10.73	5.32	3.66	5.30	3.24	3.42	4.65	1.23	0.984502	1.000000
N	jcn_only_AD	OS9	chr12	+	chr12:58112160-58112775;chr12:58112166-58112775	chr12:58112205-58112775		chr12:58112160-58112165;chr12:58112166-58112204	chr12:58112159-58112160;chr12:58112165-58112166		80.98	85.03	84.71	83.24	82.66	85.64	89.87	89.13	91.03	91.31	90.68	89.46	82.32	82.45	84.42	78.35	83.49	82.78	86.09	86.71	79.27	84.94	88.67	88.99	88.63	90.34	89.75	89.06	90.47	89.85	86.00	86.80	85.68	89.69	87.53	87.58	85.89	86.35	0.47	0.860435	0.930693
K	cassette	MARS	chr12	+	chr12:57909775-57910027	chr12:57909775-57909921;chr12:57909942-57910027		chr12:57909922-57909941			0.00	0.00	6.35	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	2.63	2.63	0.00	0.00	0.00	0.174688	0.709176
N	cassette	CCM2	chr7	+	chr7:45104246-45112324;chr7:45078026-45112324	chr7:45078026-45109424,chr7:45104246-45109424;chr7:45109561-45112324		chr7:45109425-45109560			95.65	94.81	93.62	100.00	97.92	93.10	100.00	96.72	97.03	94.12	97.78	97.22	95.92	94.74	96.30	100.00	97.73	100.00	94.87	95.08	94.87	97.30	91.53	95.38	92.31	96.10	96.97	92.00	92.86	98.59	96.83	96.55	95.00	92.73	93.10	96.43	94.94	95.88	0.94	0.745752	0.917222
K	jcn_only_AD	UQCR10	chr22	+	chr22:30163538-30165666	chr22:30163597-30165666		chr22:30163538-30163596	chr22:30163537-30163538		8.18	9.81	12.67	8.67	8.28	9.66	9.72	5.94	8.11	9.96	9.26	5.12	9.12	7.53	13.18	10.97	8.79	9.69	10.27	4.17	13.37	11.43	9.86	8.26	13.88	8.41	9.09	10.91	9.83	12.24	8.20	5.99	10.66	6.06	8.70	8.33	10.04	7.86	-2.18	0.004962	0.181747
N	alternative_acceptor	APH1B	chr15	+	chr15:63594672-63597812	chr15:63594672-63594922		chr15:63594923-63597812	chr15:63597812-63597813		2.78	2.78	3.12	3.23	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	2.56	0.00	0.00	NA	2.13	2.27	1.02	9.09	2.50	10.00	0.00	3.33	3.51	0.00	2.86	0.00	2.00	1.25	1.56	3.57	3.23	3.57	1.84	2.13	0.29	0.986508	0.995150
N	alternative_acceptor		chr3	+	chr3:184046545-184046709;chr3:184046545-184046678	chr3:184046545-184046696		chr3:184046679-184046696;chr3:184046697-184046709	chr3:184046696-184046697;chr3:184046709-184046710		100.00	100.00	98.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	98.90	97.67	100.00	100.00	98.44	100.00	100.00	100.00	94.29	98.44	100.00	98.51	98.63	98.84	100.00	100.00	0.00	0.224578	0.676947
N	jcn_only_AA	NGRN,RP11-697E2.6	chr15	+	chr15:90809631-90814419;chr15:90809631-90818678	chr15:90809631-90814829		chr15:90814420-90814829;chr15:90814830-90818678	chr15:90814829-90814830;chr15:90818678-90818679		0.00	0.00	0.00	NA	6.45	NA	0.00	0.00	0.00	7.69	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	AKR1A1	chr1	+	chr1:46034357-46034598				chr1:46034356-46034357;chr1:46034598-46034599		3.45	2.64	10.29	3.06	2.99	0.61	0.00	0.00	0.00	0.00	0.41	0.00	0.33	0.00	3.33	0.50	0.00	0.00	1.44	3.45	2.51	2.06	3.06	1.85	3.17	0.00	0.00	2.75	3.83	0.64	0.00	2.90	2.13	2.33	5.08	0.53	1.78	0.00	-1.78	0.950625	1.000000
N	cassette	BAX	chr19	+	chr19:49458220-49458943;chr19:49458220-49459454;chr19:49458194-49458943	chr19:49458194-49458804,chr19:49458220-49458804;chr19:49458857-49458943,chr19:49458857-49459454		chr19:49458805-49458856			92.65	90.53	93.55	100.00	91.55	100.00	100.00	94.34	89.87	94.55	94.03	92.31	97.80	96.55	95.16	95.24	94.32	100.00	94.94	93.75	90.99	89.47	92.47	96.43	77.63	95.56	94.40	95.83	94.23	98.04	89.86	86.67	85.14	93.62	93.33	93.88	92.73	94.05	1.31	0.467945	0.765729
N	cassette	YIPF3	chr6	-	chr6:43480613-43481096;chr6:43480613-43481325	chr6:43480613-43480806;chr6:43480939-43481325,chr6:43480939-43481096		chr6:43480807-43480938			96.63	100.00	97.35	95.45	87.50	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	97.96	100.00	97.53	98.98	96.55	96.88	97.50	96.15	93.75	100.00	96.61	93.44	96.63	100.00	98.77	-1.23	0.082239	0.641134
K	cassette	PYCARD	chr16	-	chr16:31213163-31213737	chr16:31213163-31213467;chr16:31213525-31213737		chr16:31213468-31213524			76.00	75.86	76.19	73.91	73.83	81.48	87.10	79.17	61.54	87.18	86.55	84.62	83.33	72.34	69.57	92.31	85.81	91.43	78.15	71.79	73.40	88.24	74.80	87.50	75.70	78.79	73.33	81.25	78.16	94.44	73.08	71.05	70.31	73.08	69.44	74.07	77.00	74.54	-2.47	0.283088	0.709176
K	alternative_acceptor	PSMC4	chr19	+	chr19:40478152-40478368	chr19:40478152-40478275		chr19:40478276-40478368	chr19:40478368-40478369		100.00	100.00	100.00	100.00	100.00	NA	97.78	100.00	94.44	100.00	98.65	100.00	97.86	96.55	100.00	97.56	96.49	100.00	100.00	100.00	100.00	100.00	96.97	95.74	NA	100.00	100.00	96.97	97.92	96.15	100.00	100.00	94.44	100.00	100.00	100.00	97.86	100.00	2.14	0.270709	0.709013
K	cassette	NAP1L1	chr12	-	chr12:76461254-76478346;chr12:76461254-76467982	chr12:76461254-76462688;chr12:76462775-76478346,chr12:76462775-76467982		chr12:76462689-76462774			100.00	100.00	95.62	100.00	98.51	100.00	99.21	96.55	97.97	100.00	100.00	100.00	99.06	97.33	97.89	99.59	100.00	98.45	100.00	87.72	96.30	100.00	98.55	97.41	NA	94.03	97.17	100.00	100.00	100.00	95.45	93.83	100.00	100.00	98.65	98.56	100.00	96.00	-4.00	0.046265	0.539888
K	intron_retention		chr17	+	chr17:4722514-4722723				chr17:4722513-4722514;chr17:4722723-4722724		5.08	0.00	2.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	12.90	5.88	2.63	NA	0.00	3.23	0.00	0.00	2.17	0.00	NA	0.00	1.75	0.00	3.03	0.00	0.00	3.75	4.76	5.56	2.00	2.33	0.00	0.00	0.00	0.823471	1.000000
K	jcn_only_AD	TRAPPC5	chr19	+	chr19:7745913-7747127;chr19:7745765-7747127	chr19:7745936-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		11.11	6.15	0.00	12.50	6.67	14.29	5.13	12.90	13.64	7.14	9.38	4.76	10.00	0.00	8.33	8.82	10.34	0.00	3.61	3.23	7.14	14.29	5.88	9.09	11.54	14.29	13.79	9.52	6.82	0.00	4.17	7.69	8.33	0.00	8.70	0.00	7.24	7.64	0.40	0.955344	0.975317
K	jcn_only_AA	DNAJC21,GALNT10	chr5	+	chr5:34950448-34954030	chr5:34950448-34950548		chr5:34950549-34954030	chr5:34954030-34954031		0.00	0.00	5.88	0.00	0.00	0.00	10.00	9.09	14.00	13.33	32.26	6.25	0.00	0.00	6.35	6.52	5.41	13.64	0.00	6.67	0.00	0.00	7.89	5.26	NA	9.09	0.00	NA	8.33	NA	0.00	0.00	0.00	0.00	2.78	3.03	0.00	3.33	3.33	0.456608	0.719945
K	intron_retention		chr19	+	chr19:47111846-47112102				chr19:47111845-47111846;chr19:47112102-47112103		1.85	0.83	20.68	1.00	0.14	1.11	0.12	0.00	3.12	0.00	0.00	0.00	0.00	1.17	5.56	0.00	0.00	0.00	0.25	3.86	2.68	1.48	0.55	1.72	0.20	2.66	12.16	0.62	0.26	1.79	1.64	8.45	0.20	0.32	1.16	2.12	0.20	1.75	1.55	0.053940	1.000000
K	intron_retention		chr3	+	chr3:180680729-180680815				chr3:180680728-180680729;chr3:180680815-180680816		22.00	38.24	18.57	16.67	31.03	16.67	26.00	33.33	36.51	33.33	36.59	32.50	30.91	44.44	28.57	34.04	37.21	32.35	50.00	20.41	23.68	33.33	33.33	24.14	40.00	23.73	20.69	39.13	42.11	30.30	25.64	33.33	31.25	34.29	31.25	28.07	34.75	24.69	-10.06	0.639656	1.000000
K	jcn_only_AA	CXXC1	chr18	-	chr18:47809695-47809884	chr18:47809732-47809884		chr18:47809695-47809731	chr18:47809694-47809695		94.92	97.06	95.24	95.00	100.00	94.12	100.00	100.00	100.00	NA	100.00	NA	92.00	100.00	100.00	100.00	100.00	NA	96.49	100.00	96.67	100.00	96.43	91.67	92.31	100.00	100.00	100.00	97.50	100.00	93.88	97.26	95.89	95.65	96.55	100.00	96.19	100.00	3.81	0.174931	0.663989
N	alternative_acceptor		chr22	+	chr22:50654297-50655123	chr22:50654297-50655119		chr22:50655120-50655123	chr22:50655123-50655124		92.86	100.00	100.00	100.00	96.67	100.00	100.00	96.88	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	87.50	100.00	100.00	100.00	98.44	-1.56	0.098130	0.598353
N	alternative_donor		chr1	-	chr1:161019125-161019384	chr1:161019125-161019213		chr1:161019214-161019384	chr1:161019384-161019385		83.02	86.08	87.85	NA	91.30	NA	90.18	89.13	91.30	100.00	87.88	NA	88.97	92.90	85.87	85.19	90.41	NA	88.89	87.14	100.00	NA	88.52	NA	79.63	83.84	90.43	85.71	92.98	NA	75.86	76.81	76.19	80.77	82.89	100.00	87.48	85.49	-1.99	0.924735	0.984606
K	alternative_first_exon	RP4-583P15.14,SLC2A4RG	chr20	+	chr20:62370124-62371729;chr20:62370285-62371729	chr20:62371392-62371729	chr20:62369951-62370284	chr20:62371214-62371391			0.00	0.00	3.12	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.18	8.33	3.33	NA	6.67	0.00	0.00	0.00	1.49	0.00	0.00	5.56	0.59	0.00	-0.59	0.549127	0.676693
K	alternative_donor	NACA	chr12	-	chr12:57118308-57118609;chr12:57118308-57118745	chr12:57118308-57119046		chr12:57118610-57118745;chr12:57118746-57119046	chr12:57118745-57118746;chr12:57119046-57119047		92.90	90.24	92.22	95.54	92.80	98.08	92.18	87.83	86.89	95.99	94.13	95.40	91.89	87.74	89.12	95.78	92.93	94.44	89.08	90.99	92.66	94.06	90.64	95.35	90.91	89.90	92.78	92.67	92.90	95.86	93.14	90.64	89.73	93.75	90.39	93.99	90.57	90.44	-0.13	0.820849	0.942369
K	intron_retention	FAM120B	chr6	+	chr6:170700210-170704574				chr6:170700209-170700210;chr6:170704574-170704575		0.00	4.84	6.06	3.85	0.00	2.38	0.00	4.76	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	1.64	0.00	4.76	0.00	4.55	8.33	7.32	0.00	12.00	0.00	3.77	0.00	2.04	5.56	4.76	2.13	3.19	1.89	-1.31	0.500198	1.000000
N	alternative_donor	TOM1	chr22	+	chr22:35741778-35742922	chr22:35742384-35742922		chr22:35741778-35742383	chr22:35741777-35741778		5.21	1.85	3.48	1.49	0.87	0.50	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.72	3.20	0.51	4.55	2.18	4.05	0.00	2.40	2.38	0.71	0.00	0.43	3.99	3.56	1.20	2.22	1.74	3.76	0.36	2.80	2.44	0.066973	0.443625
N	alternative_donor	TUFM	chr16	-	chr16:28855423-28855595;chr16:28855423-28855550	chr16:28855423-28855634		chr16:28855551-28855595;chr16:28855596-28855634	chr16:28855595-28855596;chr16:28855634-28855635		8.33	19.51	10.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.50	5.88	12.00	0.00	0.00	18.37	NA	12.12	0.00	0.00	0.00	34.78	26.47	19.35	0.00	0.00	0.00	9.19	8.33	-0.86	0.842430	0.955392
N	alternative_donor	ATP5O	chr21	-	chr21:35286805-35286977;chr21:35286805-35287687;chr21:35286805-35287439;chr21:35286805-35287955;chr21:35286805-35288020	chr21:35286805-35288031		chr21:35286978-35287439;chr21:35287440-35287687;chr21:35287688-35287955;chr21:35287956-35288020;chr21:35288021-35288031	chr21:35287439-35287440;chr21:35287687-35287688;chr21:35287955-35287956;chr21:35288020-35288021;chr21:35288031-35288032		98.02	98.63	98.29	100.00	99.38	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.11	98.65	99.20	99.54	99.11	100.00	98.39	99.25	100.00	100.00	100.00	97.33	93.55	96.39	98.91	98.80	98.30	100.00	98.75	-1.25	0.639059	0.837834
N	alternative_acceptor	ABHD12	chr20	-	chr20:25281425-25282854;chr20:25270866-25282854;chr20:25275667-25282854;chr20:25282270-25282854	chr20:25282015-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		30.43	32.00	26.67	30.56	54.08	32.08	54.55	68.42	60.00	39.29	72.88	35.00	28.89	33.33	31.58	46.67	28.00	26.67	32.71	35.29	33.33	30.77	29.89	30.00	30.70	31.82	28.57	31.03	17.14	33.33	70.73	33.33	33.00	55.00	32.08	33.33	32.36	34.31	1.95	0.301419	0.709013
N	jcn_only_AA	GNS	chr12	-	chr12:65110600-65113801;chr12:65111460-65113801	chr12:65110594-65113801		chr12:65110594-65110599;chr12:65110600-65111459	chr12:65110593-65110594;chr12:65110599-65110600		1.93	0.00	1.60	NA	6.25	0.00	0.65	0.95	0.64	0.82	0.87	0.88	1.55	1.64	1.06	0.93	0.78	1.35	0.00	1.73	0.00	0.00	1.59	2.45	0.00	1.20	2.42	1.72	2.25	0.00	2.38	1.54	0.00	2.15	1.33	1.51	0.00	1.69	1.69	0.003668	0.442962
K	intron_retention	WRAP73	chr1	-	chr1:3547682-3548029				chr1:3547681-3547682;chr1:3548029-3548030		25.00	30.77	22.22	16.67	21.21	21.43	15.38	30.00	26.32	NA	14.29	NA	23.53	16.67	31.25	NA	20.00	NA	18.37	23.08	20.93	NA	30.43	NA	13.04	0.00	38.89	25.00	22.22	36.36	27.27	25.53	16.28	20.00	35.71	26.32	17.33	24.04	6.71	0.980069	1.000000
K	coord_cassette	COMMD3,COMMD3-BMI1	chr10	+	chr10:22607236-22607887	chr10:22607236-22607581;chr10:22607643-22607734;chr10:22607792-22607887		chr10:22607582-22607642;chr10:22607735-22607791			92.59	100.00	96.36	92.31	98.41	100.00	98.31	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.19	100.00	96.43	100.00	97.26	NA	100.00	94.12	98.31	100.00	96.77	100.00	87.50	92.59	93.65	100.00	95.65	100.00	99.16	97.06	-2.09	0.534629	0.735686
N	jcn_only_AA	AP5Z1	chr7	+	chr7:4821386-4822946	chr7:4821386-4822426		chr7:4822427-4822946	chr7:4822946-4822947		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.00	4.44	0.00	0.00	1.82	0.00	0.00	NA	6.67	NA	0.00	11.76	15.79	0.00	0.00	0.00	0.00	0.00	0.00	30.43	21.43	NA	27.59	18.52	29.41	0.00	0.00	0.00	0.361016	0.663989
N	alternative_donor	MTCH1	chr6	-	chr6:36938471-36940427;chr6:36938471-36940478	chr6:36938471-36939657		chr6:36939658-36940427;chr6:36940428-36940478	chr6:36940427-36940428;chr6:36940478-36940479		5.00	2.40	7.35	0.00	1.19	0.00	0.76	0.39	0.78	1.23	0.86	1.06	0.49	0.40	0.78	0.65	0.00	1.20	0.00	3.74	1.28	3.97	3.50	5.56	0.00	3.45	3.24	1.44	1.45	1.23	4.55	6.54	1.82	4.52	3.66	4.79	0.62	3.60	2.97	0.064710	0.436357
N	cassette	PSTPIP1	chr15	+	chr15:77323620-77327848;chr15:77324736-77327848;chr15:77324770-77327848	chr15:77324770-77325202,chr15:77323620-77325202,chr15:77324736-77325202;chr15:77325294-77327848		chr15:77325203-77325293			75.00	72.78	83.33	66.67	81.67	71.43	100.00	NA	100.00	NA	96.77	NA	97.83	NA	100.00	NA	100.00	NA	81.00	81.25	87.64	90.00	73.68	NA	70.16	100.00	82.22	NA	85.71	NA	76.47	80.95	70.95	76.47	79.41	76.67	76.89	78.86	1.97	0.898124	0.968455
K	jcn_only_AA	CYB561A3	chr11	-	chr11:61117116-61118462	chr11:61117895-61118462		chr11:61117116-61117894	chr11:61117115-61117116		100.00	100.00	95.86	91.18	90.91	NA	98.53	97.37	97.71	95.77	97.54	100.00	98.29	98.30	97.12	97.85	97.33	100.00	88.89	96.67	93.48	96.21	96.65	96.33	84.00	97.56	95.37	96.74	96.52	94.74	95.90	98.07	100.00	97.84	96.18	96.12	98.41	97.47	-0.94	0.384828	0.663989
N	alternative_acceptor	DAZAP1	chr19	+	chr19:1418731-1421146;chr19:1418731-1421149	chr19:1418731-1419670		chr19:1419671-1421146;chr19:1421147-1421149	chr19:1421146-1421147;chr19:1421149-1421150		4.00	0.00	9.68	NA	0.00	NA	2.86	3.70	0.00	1.67	1.47	0.00	1.54	3.57	2.27	2.22	1.87	2.22	NA	7.14	7.69	6.25	8.82	6.67	NA	11.11	8.00	4.76	3.70	10.00	20.00	10.00	0.00	6.67	4.55	7.41	0.77	5.57	4.80	0.041392	0.568546
K	cassette	ITGAX	chr16	+	chr16:31383992-31388119	chr16:31383992-31384569;chr16:31384712-31388119		chr16:31384570-31384711			91.86	100.00	91.14	97.06	85.71	100.00	98.87	100.00	100.00	98.37	97.07	98.20	97.97	100.00	93.33	95.80	97.48	98.51	95.65	93.67	94.23	92.72	86.15	92.45	90.91	95.95	88.46	94.77	92.90	96.74	97.73	94.44	100.00	91.79	92.36	94.89	98.42	96.84	-1.58	0.730839	0.905819
K	alternative_acceptor	AD000671.6,IGFLR1	chr19	-	chr19:36230988-36231280;chr19:36230990-36231280	chr19:36230671-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		4.65	6.42	5.36	0.00	3.08	2.33	0.00	0.00	3.51	0.00	0.00	2.44	1.90	3.12	0.00	2.56	2.59	0.00	9.59	13.51	5.77	3.85	4.76	3.03	3.27	2.63	1.92	3.57	0.00	3.70	6.82	3.92	6.72	6.00	4.29	6.58	4.84	3.89	-0.96	0.848432	0.946486
K	intron_retention	BABAM1,CTD-2278I10.6	chr19	+	chr19:17386635-17387303				chr19:17386634-17386635;chr19:17387303-17387304		2.53	0.00	4.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	1.16	0.00	0.00	0.00	3.17	1.89	2.20	0.00	2.67	0.00	0.00	3.64	4.00	4.00	0.00	0.00	2.04	2.53	1.39	4.65	4.48	5.08	0.00	1.96	1.96	0.370660	1.000000
N	alternative_acceptor	ALYREF	chr17	-	chr17:79846286-79846395	chr17:79846295-79846395		chr17:79846286-79846294	chr17:79846285-79846286		88.57	89.89	100.00	95.74	100.00	98.13	100.00	100.00	93.94	100.00	100.00	100.00	97.30	95.65	97.22	96.40	97.42	96.77	93.59	100.00	93.90	91.25	95.29	96.61	91.04	95.65	94.00	97.10	96.20	97.18	93.62	91.07	91.58	98.61	93.85	98.63	92.59	95.65	3.06	0.496850	0.791230
K	alternative_acceptor	WBP2	chr17	-	chr17:73843679-73843876	chr17:73843691-73843876		chr17:73843679-73843690	chr17:73843678-73843679		96.25	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.13	100.00	97.59	98.84	98.68	100.00	96.51	100.00	98.80	100.00	93.22	100.00	100.00	96.15	100.00	100.00	97.62	100.00	95.12	100.00	100.00	96.15	97.83	92.86	98.53	100.00	100.00	100.00	96.94	-3.06	0.307352	0.709013
K	intron_retention		chr11	+	chr11:64001453-64001544				chr11:64001452-64001453;chr11:64001544-64001545		40.00	35.10	27.12	44.44	40.43	41.07	28.95	50.00	47.37	46.67	41.38	33.33	35.14	46.67	36.84	30.00	40.91	54.55	32.16	33.33	43.33	33.33	41.79	50.00	27.41	44.00	33.33	41.67	32.20	42.86	33.33	29.03	35.98	51.61	41.67	47.62	33.63	42.00	8.37	0.187982	1.000000
K	alternative_acceptor	LILRB1	chr19	+	chr19:55145140-55145424	chr19:55145140-55145421		chr19:55145422-55145424	chr19:55145424-55145425		34.95	28.95	36.84	NA	NA	NA	52.50	44.94	46.88	40.62	55.81	46.00	51.28	44.44	40.00	44.00	37.93	45.00	26.67	35.20	31.03	34.48	33.33	40.00	26.32	39.85	41.06	44.59	35.29	46.27	36.89	31.15	NA	36.36	34.62	36.73	28.95	38.37	9.42	0.738494	0.902878
K	jcn_only_AA	CD163L1	chr12	-	chr12:7499744-7509975	chr12:7507727-7509975		chr12:7499744-7507726	chr12:7499743-7499744		98.62	100.00	97.22	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	97.25	66.67	NA	91.30	100.00	NA	100.00	98.35	100.00	100.00	99.49	97.53	100.00	91.80	96.08	100.00	100.00	100.00	100.00	95.74	100.00	98.11	100.00	98.82	100.00	98.35	-1.65	0.249060	0.663989
K	intron_retention		chr5	-	chr5:179226122-179226202				chr5:179226121-179226122;chr5:179226202-179226203		5.10	6.48	5.19	0.00	3.12	0.00	0.00	0.00	2.22	0.00	1.27	0.00	0.80	0.00	0.00	0.00	0.70	0.00	0.00	4.08	1.89	2.86	4.84	0.00	0.00	4.76	6.25	2.04	2.02	6.45	7.58	6.78	0.00	2.20	3.77	2.94	0.00	4.42	4.42	0.333513	1.000000
K	intron_retention	PTGR1	chr9	-	chr9:114348446-114355205				chr9:114348445-114348446;chr9:114355205-114355206		0.00	0.00	2.74	2.86	2.78	NA	0.00	3.85	0.00	2.11	0.00	0.00	1.96	3.79	4.44	2.99	0.00	0.00	15.38	2.67	2.68	0.00	2.08	4.65	0.00	5.11	1.94	3.64	1.89	5.08	2.61	2.75	NA	2.29	4.00	6.48	0.00	3.23	3.23	0.859419	1.000000
K	alternative_acceptor	MED11	chr17	+	chr17:4635202-4636344	chr17:4635202-4636233		chr17:4636234-4636344	chr17:4636344-4636345		70.59	31.58	46.43	70.59	68.89	75.00	9.38	47.06	18.18	14.29	25.00	NA	6.25	14.29	18.18	8.33	10.00	NA	36.36	60.00	51.22	NA	64.71	NA	NA	64.71	41.67	30.00	29.17	37.50	81.48	79.49	52.00	53.85	54.55	31.25	31.58	62.35	30.77	0.049486	0.570243
K	intron_retention	SLC39A13	chr11	+	chr11:47435238-47435975				chr11:47435237-47435238;chr11:47435975-47435976		8.97	3.28	11.63	8.33	20.83	5.26	1.82	0.00	0.00	1.35	0.00	0.00	3.08	3.95	4.65	2.67	2.22	0.00	6.67	12.82	6.52	11.11	23.53	16.00	30.00	5.36	15.91	13.95	14.58	15.38	4.08	10.53	9.09	11.90	13.59	9.46	4.97	4.72	-0.25	0.974439	1.000000
N	cassette	PIGT	chr20	+	chr20:44053022-44054213	chr20:44053022-44053135;chr20:44053220-44054213		chr20:44053136-44053219			100.00	100.00	100.00	100.00	97.90	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	97.62	100.00	95.45	95.35	96.36	100.00	98.21	100.00	100.00	100.00	100.00	94.03	94.57	97.16	100.00	95.12	96.03	100.00	99.10	-0.90	0.733590	0.907179
K	intron_retention	C11orf31	chr11	+	chr11:57509427-57509588				chr11:57509426-57509427;chr11:57509588-57509589		6.00	0.83	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	2.63	3.41	0.00	0.00	0.00	7.69	1.69	1.72	0.00	3.45	7.89	0.50	1.52	2.35	5.17	0.00	1.73	1.73	0.513966	1.000000
K	cassette	ARHGEF1	chr19	+	chr19:42408536-42409326	chr19:42408536-42409100;chr19:42409189-42409326		chr19:42409101-42409188			92.50	96.48	92.50	92.86	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	97.70	93.55	95.71	94.29	94.05	100.00	92.31	95.24	95.95	100.00	100.00	100.00	94.64	96.70	94.00	95.35	96.67	96.97	97.09	94.94	-2.15	0.689001	0.885445
K	cassette	CDIPT	chr16	-	chr16:29870656-29871901	chr16:29870656-29870762;chr16:29870845-29871901		chr16:29870763-29870844			95.65	87.93	93.42	100.00	92.68	NA	97.65	100.00	98.41	97.62	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	92.31	100.00	100.00	100.00	89.23	100.00	92.73	100.00	88.57	95.16	89.66	93.55	95.83	94.83	98.83	100.00	1.17	0.625183	0.863282
K	intron_retention	PPP1R12C	chr19	-	chr19:55606727-55606812				chr19:55606726-55606727;chr19:55606812-55606813		0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	2.27	0.00	5.26	0.00	2.38	2.38	1.49	0.00	1.92	1.54	0.00	2.70	2.82	5.26	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor		chr11	+	chr11:63979220-63986701;chr11:63979220-63986726;chr11:63979220-63979399	chr11:63979220-63986722		chr11:63979400-63986701;chr11:63986702-63986722;chr11:63986723-63986726	chr11:63986701-63986702;chr11:63986722-63986723;chr11:63986726-63986727		97.17	98.97	94.29	97.96	94.38	NA	99.24	99.45	100.00	99.60	99.33	97.85	99.29	99.14	97.80	98.70	98.37	100.00	97.44	95.90	97.18	96.36	94.61	98.67	92.86	95.38	97.08	98.25	97.80	100.00	92.59	95.16	94.55	96.77	95.60	96.69	98.20	96.53	-1.67	0.773384	0.915715
N	jcn_only_AA	SARS	chr1	+	chr1:109756751-109757168;chr1:109756751-109766578;chr1:109756751-109766599	chr1:109756751-109766603		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		2.44	0.00	1.05	0.00	0.00	NA	0.69	0.00	1.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	5.71	2.78	0.00	0.00	4.92	0.00	0.00	0.00	0.00	2.08	0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.240844	0.663989
K	intron_retention	AP1B1	chr22	-	chr22:29725710-29726366				chr22:29725709-29725710;chr22:29726366-29726367		2.33	0.00	8.70	0.00	2.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.31	0.00	0.00	3.70	0.00	0.00	3.10	0.00	3.33	0.00	5.41	6.25	3.11	0.00	4.55	13.04	0.00	2.70	5.75	1.59	0.00	2.06	2.06	0.636297	1.000000
K	intron_retention	RALY	chr20	+	chr20:32661442-32663679				chr20:32661441-32661442;chr20:32663679-32663680		8.11	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	5.13	0.00	3.23	1.59	4.76	NA	0.00	0.00	0.00	0.00	4.00	0.00	7.14	0.00	3.12	6.06	0.00	0.00	0.00	0.00	0.597854	1.000000
N	jcn_only_AD	AOAH	chr7	-	chr7:36589082-36589490;chr7:36589082-36616179	chr7:36589082-36589700		chr7:36589491-36589700;chr7:36589701-36616179	chr7:36589700-36589701;chr7:36616179-36616180		0.00	3.70	2.33	4.76	0.00	0.00	0.00	1.52	1.41	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	4.35	3.12	0.00	0.00	3.12	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.33	6.82	2.30	2.00	3.94	3.70	0.00	-3.70	0.179700	0.657607
K	alternative_first_exon	TSPO	chr22	+	chr22:43551945-43555215;chr22:43547611-43555215	chr22:43548134-43555215,chr22:43548227-43555215	chr22:43547520-43547610	chr22:43547941-43548133			10.13	7.82	6.67	5.08	7.91	2.86	5.21	4.00	8.57	6.80	7.91	3.19	4.90	6.67	7.69	5.19	7.14	7.04	6.76	5.88	9.73	6.10	5.08	5.41	5.74	3.57	7.46	5.97	4.51	4.05	4.00	11.11	7.26	7.50	7.94	8.51	6.25	4.94	-1.31	0.625033	0.735171
N	alternative_first_exon	SEPT9	chr17	+	chr17:75423284-75478225,chr17:75450079-75478225,chr17:75447061-75478225;chr17:75398786-75478225;chr17:75401223-75478225;chr17:75316431-75478225;chr17:75446869-75478225;chr17:75447611-75478225	chr17:75450446-75478225	chr17:75398141-75398785;chr17:75401159-75401222;chr17:75315597-75316430;chr17:75446819-75446868;chr17:75447326-75447610	chr17:75450075-75450445			0.00	11.76	1.28	0.00	0.00	NA	4.63	0.00	3.57	0.29	0.98	0.85	5.73	0.00	3.23	0.61	1.38	1.20	NA	0.00	0.00	1.64	3.45	1.20	9.09	1.20	0.00	0.61	1.94	2.20	0.00	0.00	9.09	1.67	1.86	0.82	9.09	0.00	-9.09	0.003236	0.027001
K	intron_retention	MAP2K2	chr19	-	chr19:4094497-4095385				chr19:4094496-4094497;chr19:4095385-4095386		28.92	23.76	23.71	20.51	22.22	23.26	0.00	0.89	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	21.43	20.31	11.47	11.76	15.79	20.59	25.95	12.66	19.19	3.51	3.85	5.38	30.43	29.03	24.31	25.53	13.16	21.65	22.59	16.48	-6.11	0.823787	1.000000
N	jcn_only_AD	SUCLG1	chr2	-	chr2:84660560-84668170	chr2:84660560-84663175		chr2:84663176-84668170	chr2:84668170-84668171		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	PLXND1	chr3	-	chr3:129303077-129304794	chr3:129303077-129303227;chr3:129303406-129304794		chr3:129303228-129303405			100.00	100.00	98.76	NA	NA	NA	100.00	100.00	100.00	100.00	99.60	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.55	97.37	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	87.50	100.00	100.00	95.77	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	ZFAND2B	chr2	+	chr2:220073209-220073293				chr2:220073208-220073209;chr2:220073293-220073294		4.08	1.95	9.52	0.00	3.80	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.17	0.00	0.00	0.00	0.00	NA	0.00	3.57	0.00	5.26	5.88	NA	0.00	0.00	1.89	6.67	2.78	NA	6.25	6.52	2.54	6.67	9.09	9.09	0.97	1.78	0.81	0.969203	1.000000
K	alternative_acceptor	AAMP	chr2	-	chr2:219134258-219134688	chr2:219134261-219134688		chr2:219134258-219134260	chr2:219134257-219134258		11.94	6.52	5.97	NA	0.00	NA	6.90	4.65	7.02	6.17	7.78	7.32	8.51	8.51	10.20	5.48	8.26	9.09	NA	9.30	10.71	3.45	3.92	5.00	NA	6.52	5.66	4.55	5.26	0.00	14.81	8.57	0.00	5.41	3.64	8.11	6.71	8.91	2.20	0.160640	0.660713
N	cassette	DBNL	chr7	+	chr7:44091542-44096355;chr7:44089880-44096355;chr7:44089880-44097380	chr7:44091542-44092465,chr7:44089880-44092465;chr7:44092541-44096355,chr7:44092541-44097380		chr7:44092466-44092540			98.39	100.00	100.00	91.67	100.00	100.00	98.64	98.88	100.00	100.00	98.54	98.51	98.28	100.00	98.64	98.44	99.43	98.68	93.33	100.00	97.06	96.15	100.00	97.06	100.00	98.81	98.00	100.00	98.57	100.00	97.22	100.00	100.00	100.00	100.00	98.53	99.32	98.84	-0.47	0.669816	0.880013
K	intron_retention	MAP7D1	chr1	+	chr1:36644917-36645112				chr1:36644916-36644917;chr1:36645112-36645113		10.34	24.00	4.65	5.56	7.32	10.00	0.00	4.17	0.00	0.00	0.00	NA	3.70	0.00	0.00	0.00	0.00	0.00	22.22	9.38	14.81	9.38	6.06	9.52	18.75	8.57	11.76	2.86	2.63	3.85	21.43	21.05	42.31	7.81	9.80	6.38	20.48	8.98	-11.51	0.429501	1.000000
N	alternative_acceptor	SGSM2	chr17	+	chr17:2282498-2282705;chr17:2282498-2282725	chr17:2282498-2283558		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		0.00	0.00	0.00	6.67	6.45	NA	0.00	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	4.65	7.14	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	SMARCD2	chr17	-	chr17:61914598-61919818	chr17:61914598-61914800;chr17:61914986-61919818		chr17:61914801-61914985			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	NA	100.00	NA	90.00	100.00	NA	94.12	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.607446	0.853757
K	alternative_first_exon	MRPL27	chr17	-	chr17:48447948-48450491;chr17:48447948-48450231	chr17:48447948-48448266	chr17:48450492-48450575;chr17:48450232-48450321	chr17:48448267-48448524			0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.746916	0.824077
K	intron_retention	DDX41	chr5	-	chr5:176942260-176942685				chr5:176942259-176942260;chr5:176942685-176942686		6.00	6.45	16.42	NA	11.11	NA	2.04	0.00	0.00	1.89	1.45	0.00	0.00	NA	2.44	2.13	2.30	0.00	6.67	6.06	0.00	15.79	16.98	14.29	16.67	0.00	14.29	6.25	5.00	5.26	6.45	15.56	8.00	10.53	11.11	10.42	6.56	6.00	-0.56	0.544733	1.000000
K	intron_retention	SIDT2	chr11	+	chr11:117064680-117066517				chr11:117064679-117064680;chr11:117066517-117066518		9.09	66.67	26.09	81.82	60.87	100.00	1.30	0.00	0.00	0.00	1.96	0.00	1.54	0.00	4.76	8.33	1.85	0.00	86.36	7.32	61.54	NA	22.58	5.26	82.05	0.00	22.22	6.67	20.00	2.94	8.33	27.78	80.00	15.38	17.65	4.88	73.34	3.66	-69.68	0.059762	1.000000
N	alternative_acceptor	NUB1	chr7	+	chr7:151073030-151073719	chr7:151073030-151073408		chr7:151073409-151073719	chr7:151073719-151073720		2.30	10.53	2.65	0.00	6.25	3.37	0.00	0.00	0.30	0.00	0.00	0.00	0.00	0.40	0.36	0.00	0.00	0.74	0.00	1.50	2.25	0.00	0.00	4.46	18.18	2.55	2.78	4.88	0.00	1.83	3.41	3.27	0.00	6.06	0.00	4.91	0.00	1.90	1.90	0.379958	0.709013
N	alternative_acceptor	GUK1	chr1	+	chr1:228333769-228334542;chr1:228333769-228334503	chr1:228333769-228334561		chr1:228334504-228334542;chr1:228334543-228334561	chr1:228334542-228334543;chr1:228334561-228334562		9.09	4.39	8.74	11.71	8.67	11.49	10.32	7.87	7.14	9.87	7.11	7.48	6.67	12.64	10.26	11.36	7.84	6.98	12.94	12.22	12.96	9.71	8.12	7.06	8.22	5.88	10.00	11.11	12.24	12.82	13.04	14.86	9.33	5.43	10.67	9.04	8.78	10.66	1.88	0.406456	0.720290
N	cassette	DNAJC15	chr13	+	chr13:43643140-43659903	chr13:43643140-43652747;chr13:43652825-43659903		chr13:43652748-43652824			90.91	100.00	94.81	100.00	96.59	100.00	100.00	100.00	98.97	100.00	95.65	94.23	100.00	100.00	97.44	98.73	97.75	97.01	100.00	93.68	100.00	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	98.59	94.79	98.10	100.00	100.00	96.55	100.00	100.00	95.81	-4.19	0.043574	0.523776
N	alternative_acceptor	TMEM14C	chr6	+	chr6:10723475-10724808;chr6:10723475-10724788	chr6:10723475-10724802		chr6:10724789-10724802;chr6:10724803-10724808	chr6:10724802-10724803;chr6:10724808-10724809		100.00	100.00	97.14	100.00	96.77	NA	94.51	93.33	97.14	98.04	97.18	95.12	97.30	95.65	92.50	95.77	97.18	100.00	92.31	95.00	100.00	96.88	98.36	97.14	NA	93.75	97.56	96.15	95.35	96.15	92.86	93.55	94.74	94.29	93.62	93.55	94.74	94.38	-0.36	0.701863	0.887511
K	alternative_last_exon	CIDECP	chr3	-	chr3:10057211-10065243	chr3:10059756-10065243	chr3:10055922-10057210	chr3:10059174-10059755			90.91	97.62	88.57	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.67	NA	89.29	93.33	90.91	NA	95.83	94.44	97.44	100.00	91.30	NA	96.15	90.00	89.29	100.00	100.00	NA	95.83	91.67	96.15	96.00	87.50	91.67	96.15	94.44	-1.71	0.376611	0.543021
K	cassette	HMGN1	chr21	-	chr21:40717201-40720217;chr21:40717201-40719304;chr21:40717201-40719172	chr21:40717201-40717755;chr21:40717885-40720217,chr21:40717885-40719172,chr21:40717885-40719304		chr21:40717756-40717884			0.00	3.03	3.51	9.09	6.67	NA	0.37	1.09	1.27	1.31	1.46	0.00	0.62	0.64	2.51	1.69	2.10	2.30	0.00	1.89	2.86	4.26	5.83	5.88	NA	2.90	4.72	2.44	5.56	3.85	2.78	3.30	0.00	3.37	4.92	1.12	0.37	1.49	1.12	0.344121	0.709176
N	cassette	SAMD4A	chr14	+	chr14:55243259-55251254;chr14:55250129-55251254	chr14:55250129-55251057,chr14:55243259-55251057;chr14:55251166-55251254		chr14:55251058-55251165			14.63	0.00	0.00	8.89	12.50	14.71	0.00	16.47	13.04	11.94	5.41	15.73	0.00	18.18	16.67	11.43	2.38	12.34	5.26	13.89	12.50	9.09	NA	22.35	0.00	31.48	9.09	11.54	5.26	19.12	22.22	NA	14.29	14.29	10.00	18.37	0.00	17.32	17.32	0.001142	0.112365
N	cassette	KIAA0100	chr17	-	chr17:26943216-26943635	chr17:26943216-26943396;chr17:26943528-26943635		chr17:26943397-26943527			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	PPM1M	chr3	+	chr3:52283339-52283660;chr3:52283339-52283685	chr3:52283339-52283671		chr3:52283661-52283671;chr3:52283672-52283685	chr3:52283671-52283672;chr3:52283685-52283686		2.13	5.88	1.89	NA	1.32	NA	0.00	4.88	4.35	0.00	1.90	0.00	0.00	0.00	4.35	5.88	0.00	NA	5.56	0.00	3.85	8.33	5.81	NA	9.09	7.69	7.69	0.00	0.97	NA	8.33	2.56	4.35	4.17	12.50	NA	4.96	3.50	-1.45	0.886212	0.961240
K	intron_retention		chr11	-	chr11:14535434-14535948				chr11:14535433-14535434;chr11:14535948-14535949		5.08	3.70	5.85	4.44	3.19	11.11	0.55	1.63	0.99	0.38	0.77	0.47	1.03	1.12	3.20	0.66	0.69	0.00	0.00	6.36	1.83	4.41	5.52	7.05	NA	5.92	3.80	6.02	3.08	6.82	9.52	10.37	0.00	6.19	6.40	6.33	0.55	5.50	4.95	0.047159	1.000000
K	intron_retention	EIF3G	chr19	-	chr19:10226751-10227475				chr19:10226750-10226751;chr19:10227475-10227476		11.36	7.24	9.71	8.47	7.46	7.85	6.73	3.23	1.01	1.60	13.38	1.43	5.00	5.56	1.10	2.52	7.22	0.00	4.08	6.85	3.60	7.06	9.04	7.69	4.45	7.35	5.22	7.56	8.29	5.30	10.47	5.26	5.56	10.45	11.20	8.99	5.28	7.10	1.82	0.617129	1.000000
N	alternative_donor	LONP1	chr19	-	chr19:5700939-5705782;chr19:5700939-5704119	chr19:5700939-5703651		chr19:5703652-5704119;chr19:5704120-5705782	chr19:5704119-5704120;chr19:5705782-5705783		0.00	0.00	2.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_acceptor	ACP2	chr11	-	chr11:47261801-47264273;chr11:47261718-47264273;chr11:47261435-47264273;chr11:47263622-47264273	chr11:47261750-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		3.61	0.00	2.44	3.57	5.65	6.56	1.43	1.98	2.84	3.97	0.00	0.00	4.63	3.33	3.28	3.48	5.26	0.00	0.00	2.70	1.98	0.00	3.73	0.00	1.12	1.86	1.81	0.00	0.00	0.00	0.00	2.98	3.53	2.27	6.03	3.12	1.27	2.34	1.06	0.635765	0.862118
N	cassette	GIPC1	chr19	-	chr19:14591591-14603668;chr19:14591591-14602467	chr19:14591591-14593500;chr19:14593819-14602467,chr19:14593819-14603668		chr19:14593501-14593818			66.67	80.00	67.74	NA	72.73	NA	86.11	88.89	87.88	100.00	80.00	NA	89.58	88.89	80.00	75.00	66.67	NA	81.82	52.63	57.14	NA	60.87	NA	68.75	68.75	64.00	NA	67.86	NA	NA	58.82	50.00	54.55	73.68	NA	80.91	68.75	-12.16	0.761779	0.925284
K	intron_retention	IFI35	chr17	+	chr17:41165397-41165492				chr17:41165396-41165397;chr17:41165492-41165493		10.00	20.69	17.65	13.51	13.64	9.71	0.00	0.90	1.04	0.00	0.00	1.35	0.00	1.00	2.35	3.23	0.00	2.04	7.69	8.86	5.49	25.00	6.67	13.86	0.00	7.72	13.95	20.45	11.76	8.47	9.52	12.94	14.29	25.00	NA	14.93	3.85	8.29	4.44	0.989821	1.000000
N	alternative_donor	SLC11A1	chr2	+	chr2:219247794-219248965	chr2:219247826-219248965		chr2:219247794-219247825	chr2:219247793-219247794		97.59	100.00	97.14	NA	100.00	NA	100.00	97.75	100.00	100.00	100.00	100.00	98.29	98.24	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.39	95.77	100.00	100.00	100.00	93.75	100.00	NA	100.00	100.00	100.00	100.00	97.67	-2.33	0.045738	0.378287
N	intron_retention		chr17	+	chr17:37075730-37076009				chr17:37075729-37075730;chr17:37076009-37076010		99.22	94.32	100.00	NA	97.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.21	100.00	100.00	100.00	97.16	100.00	2.84	0.205358	1.000000
N	alternative_acceptor	AKAP13,FAN1	chr15	+	chr15:86283504-86284276;chr15:86283504-86291982	chr15:86283504-86284244		chr15:86284245-86284276;chr15:86284277-86291982	chr15:86284276-86284277;chr15:86291982-86291983		1.96	4.55	2.38	7.69	14.29	17.65	0.00	0.00	0.00	2.63	2.17	5.26	0.00	0.00	0.00	0.00	2.00	0.00	18.18	2.56	5.26	3.45	2.94	2.70	NA	0.00	1.54	5.00	3.70	5.00	4.17	1.79	8.33	1.85	2.78	2.00	4.55	0.98	-3.57	0.233745	0.685872
N	jcn_only_AA	MAPK13	chr6	+	chr6:36098479-36099047	chr6:36098479-36098696		chr6:36098697-36099047	chr6:36099047-36099048		5.41	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.91	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837462		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		3.66	3.41	3.60	0.00	4.24	0.00	5.29	2.50	3.64	4.36	4.19	4.33	2.95	2.80	2.39	5.00	4.31	2.83	6.56	2.53	5.38	0.00	0.00	0.87	0.00	3.14	2.32	3.60	4.51	4.76	3.79	0.00	6.25	3.93	3.74	4.72	4.35	2.97	-1.38	0.372322	0.663989
K	intron_retention	TPP1	chr11	-	chr11:6638091-6638205				chr11:6638090-6638091;chr11:6638205-6638206		0.00	0.00	9.02	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.30	0.00	0.00	0.00	0.66	0.00	NA	2.78	0.00	2.27	3.23	1.75	6.45	1.27	4.11	1.89	1.50	0.00	0.00	2.94	NA	2.58	3.50	0.61	0.15	0.00	-0.15	0.787574	1.000000
N	cassette	RPS21	chr20	+	chr20:60962731-60963364;chr20:60962731-60963512	chr20:60962731-60962898;chr20:60962971-60963512,chr20:60962971-60963364		chr20:60962899-60962970			95.68	95.41	93.12	95.57	95.76	95.69	98.87	99.08	97.69	99.14	98.96	97.40	99.19	98.21	97.25	99.18	98.97	98.34	94.66	95.87	98.09	96.55	96.06	97.15	96.46	96.47	95.31	97.81	98.17	97.61	96.67	93.77	94.51	96.67	96.58	96.19	95.94	96.57	0.63	0.646319	0.869972
K	cassette	EXOSC9	chr4	+	chr4:122732827-122735020	chr4:122732827-122734388;chr4:122734536-122735020		chr4:122734389-122734535			100.00	100.00	94.29	100.00	100.00	98.15	100.00	99.24	100.00	100.00	100.00	100.00	100.00	95.59	100.00	100.00	100.00	100.00	100.00	99.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.62	-0.38	0.209281	0.709176
N	jcn_only_AA		chr19	+	chr19:58905963-58906075;chr19:58905963-58906078	chr19:58905963-58906048		chr19:58906049-58906075;chr19:58906076-58906078	chr19:58906075-58906076;chr19:58906078-58906079		94.74	98.26	100.00	99.73	99.52	99.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.84	100.00	100.00	98.18	100.00	99.30	100.00	99.25	98.23	99.49	100.00	100.00	100.00	100.00	100.00	94.03	100.00	98.08	98.93	99.37	99.44	98.88	100.00	1.12	0.509672	0.760069
N	jcn_only_AA	ARL1	chr12	-	chr12:101759384-101790176	chr12:101789449-101790176		chr12:101759384-101789448	chr12:101759383-101759384		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AD	MRPL51	chr12	-	chr12:6602139-6602882;chr12:6602139-6602223;chr12:6602139-6602839	chr12:6602139-6602624		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		4.55	4.44	3.36	1.41	3.30	4.17	3.93	0.00	3.60	2.83	3.03	3.03	4.74	1.82	2.56	1.36	5.37	2.53	3.46	2.75	2.19	1.37	2.56	2.04	5.91	9.30	3.42	1.37	3.56	2.76	3.61	2.44	5.00	3.74	1.46	1.80	4.59	3.18	-1.41	0.524331	0.754861
K	intron_retention	KCNN4	chr19	-	chr19:44271242-44271691				chr19:44271241-44271242;chr19:44271691-44271692		13.08	11.60	13.61	4.53	5.48	4.14	4.40	1.64	3.57	2.88	4.29	2.56	3.90	2.86	5.26	2.27	2.77	2.14	7.81	8.26	3.85	8.40	6.58	6.21	6.82	10.61	8.43	5.60	5.21	3.50	19.51	6.38	7.63	4.62	5.41	5.00	7.22	9.43	2.21	0.894567	1.000000
K	intron_retention		chr6	-	chr6:109768926-109769077				chr6:109768925-109768926;chr6:109769077-109769078		7.14	16.67	24.32	NA	0.00	NA	1.85	2.08	7.69	0.00	2.13	0.00	1.72	0.00	0.00	0.00	2.56	0.00	8.33	5.00	3.12	11.11	28.12	7.69	9.09	6.56	18.52	0.00	9.09	0.00	7.89	15.15	0.00	5.41	15.38	11.54	5.09	5.78	0.69	0.924580	1.000000
K	alternative_acceptor	ANP32A	chr15	-	chr15:69079835-69080108	chr15:69079875-69080108		chr15:69079835-69079874	chr15:69079834-69079835		97.37	82.00	93.51	90.00	88.14	NA	89.91	88.89	93.65	91.67	93.62	95.83	87.60	89.29	92.06	90.24	91.37	92.86	87.93	93.55	86.11	90.48	85.88	90.00	100.00	90.00	91.04	90.91	89.23	83.33	93.55	91.07	83.82	89.19	90.67	90.62	87.77	91.78	4.01	0.257457	0.709013
N	jcn_only_AD	THOC7	chr3	-	chr3:63825450-63850312;chr3:63825450-63849179;chr3:63825450-63850053	chr3:63825450-63849447		chr3:63849180-63849447;chr3:63849448-63850053;chr3:63850054-63850312	chr3:63849447-63849448;chr3:63850053-63850054;chr3:63850312-63850313		94.12	100.00	83.33	NA	NA	NA	85.71	100.00	88.24	100.00	93.33	92.86	85.19	80.00	86.96	95.24	94.59	93.75	100.00	100.00	100.00	100.00	96.15	100.00	NA	84.21	100.00	88.24	95.65	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	97.06	-2.94	0.829893	0.923322
K	intron_retention	HNRNPA1	chr12	+	chr12:54676085-54676177				chr12:54676084-54676085;chr12:54676177-54676178		1.55	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.00	0.00	2.88	0.99	0.67	0.26	0.00	0.00	0.00	0.39	0.00	0.00	0.00	5.75	4.76	2.24	0.58	0.27	0.86	0.00	0.78	0.78	0.380001	1.000000
N	cassette	AGAP3	chr7	+	chr7:150817233-150820880	chr7:150817233-150817606;chr7:150817655-150820880		chr7:150817607-150817654			0.00	0.00	0.98	0.00	0.00	NA	2.67	2.38	1.92	5.36	1.39	6.25	1.82	4.55	0.00	1.20	3.57	6.25	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.669999	0.880013
N	alternative_acceptor	EIF4G2	chr11	-	chr11:10821322-10821636;chr11:10821331-10821636;chr11:10821157-10821636	chr11:10821304-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		92.57	86.84	93.35	84.21	91.53	NA	98.17	96.65	97.49	98.08	97.29	98.01	98.03	97.27	96.02	96.98	96.88	96.65	80.00	90.71	87.76	93.98	94.30	93.50	NA	93.04	93.23	94.77	94.47	91.49	82.42	87.89	75.00	94.98	94.34	94.59	86.84	92.81	5.97	0.418504	0.732454
N	alternative_acceptor	CD33	chr19	+	chr19:51738509-51738785;chr19:51738509-51738772	chr19:51738509-51738849		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		91.67	96.84	96.92	NA	100.00	NA	96.26	100.00	95.24	97.78	98.06	94.83	94.95	NA	100.00	97.14	95.35	90.62	94.29	82.61	95.56	100.00	92.31	100.00	100.00	91.30	93.26	100.00	91.53	96.77	80.00	94.74	92.86	95.56	90.00	94.03	95.61	91.30	-4.31	0.133140	0.629354
K	intron_retention	SIRT6	chr19	-	chr19:4175758-4175838				chr19:4175757-4175758;chr19:4175838-4175839		8.33	0.00	8.57	0.00	6.67	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	5.26	5.88	4.76	0.00	0.00	4.35	9.38	0.00	4.35	11.76	3.33	0.00	6.67	0.00	5.56	3.45	0.00	1.67	1.67	0.723211	1.000000
K	alternative_acceptor	CYB5R1	chr1	-	chr1:202935122-202935655	chr1:202935238-202935655		chr1:202935122-202935237	chr1:202935121-202935122		0.00	0.00	2.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	3.70	1.85	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.00	5.56	0.00	2.27	0.00	0.00	0.00	0.00	0.589147	0.844088
N	alternative_acceptor	H2AFZ	chr4	-	chr4:100870544-100870819;chr4:100870506-100870819	chr4:100870537-100870819		chr4:100870506-100870536;chr4:100870537-100870543	chr4:100870505-100870506;chr4:100870536-100870537		1.54	0.00	0.96	0.00	1.32	0.00	1.20	0.00	1.37	0.85	0.00	0.00	1.32	0.00	0.00	0.00	1.11	0.00	2.38	6.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	2.08	2.94	2.04	0.00	1.45	0.00	1.26	0.77	-0.49	0.680022	0.880186
K	intron_retention	MAPK8IP3	chr16	+	chr16:1818628-1818703				chr16:1818627-1818628;chr16:1818703-1818704		2.78	0.00	3.23	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6.67	5.88	5.88	5.88	2.50	0.00	0.00	0.00	0.00	0.00	0.00	NA	19.23	11.11	0.00	0.00	3.03	3.33	0.00	4.33	4.33	0.884585	1.000000
K	alternative_donor	LRRC75A-AS1	chr17	+	chr17:16342729-16343498	chr17:16343018-16343498		chr17:16342729-16343017	chr17:16342728-16342729		27.27	12.17	30.91	12.50	8.60	13.64	10.56	31.25	36.36	9.21	9.14	8.21	3.23	15.38	15.38	5.59	3.03	2.83	7.81	30.00	23.21	22.92	14.10	20.00	6.94	NA	22.41	6.94	8.44	7.93	25.00	27.27	10.96	11.04	10.56	9.71	9.19	27.27	18.09	0.001700	0.110625
N	jcn_only_AA	TMEM110,TMEM110-MUSTN1	chr3	-	chr3:52881568-52883807;chr3:52878958-52883807;chr3:52883231-52883807	chr3:52881565-52883807		chr3:52878958-52881564;chr3:52881565-52881567;chr3:52881568-52883230	chr3:52878957-52878958;chr3:52881564-52881565;chr3:52881567-52881568		0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	NA	8.33	0.00	NA	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	KLHDC8B	chr3	+	chr3:49212597-49213037				chr3:49212596-49212597;chr3:49213037-49213038		28.57	0.00	NA	NA	NA	NA	0.00	0.00	NA	NA	8.33	NA	4.00	0.00	NA	NA	4.76	NA	0.00	15.00	NA	NA	7.69	NA	18.75	8.70	NA	NA	0.00	NA	14.29	36.36	28.57	NA	NA	NA	2.00	11.49	9.49	0.885672	1.000000
K	intron_retention	NCF1	chr7	+	chr7:74197405-74197867				chr7:74197404-74197405;chr7:74197867-74197868		5.38	4.05	6.25	0.00	2.16	4.00	1.59	1.28	0.85	0.00	1.72	1.76	1.28	1.86	2.04	3.23	3.38	2.87	2.40	4.67	3.19	6.33	3.66	10.85	10.38	6.61	8.56	11.72	2.17	6.85	3.32	6.19	3.68	6.86	4.07	4.61	3.04	4.00	0.96	0.671541	1.000000
K	cassette	SGSH	chr17	-	chr17:78188128-78188831	chr17:78188128-78188413;chr17:78188565-78188831		chr17:78188414-78188564			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.65	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	92.31	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	UBXN1	chr11	-	chr11:62446425-62446510				chr11:62446424-62446425;chr11:62446510-62446511		76.81	88.24	86.25	89.47	96.97	91.43	84.44	80.77	82.05	84.62	96.15	86.36	87.50	91.67	83.72	89.13	85.19	78.26	90.57	88.10	91.53	88.89	92.19	86.67	95.65	93.02	86.49	90.00	100.00	89.13	87.04	86.42	87.10	94.59	86.27	93.02	87.87	87.57	-0.30	0.578494	1.000000
K	intron_retention	SIRT2	chr19	-	chr19:39370141-39370271				chr19:39370140-39370141;chr19:39370271-39370272		3.03	0.00	2.86	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	3.70	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.919199	1.000000
N	alternative_acceptor	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479317	chr10:45478112-45479388		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		23.33	19.35	16.44	NA	NA	NA	12.70	17.18	12.77	9.79	7.69	7.55	10.74	17.30	12.60	11.11	6.33	7.81	NA	23.16	15.00	12.50	18.92	17.54	0.00	18.49	17.04	15.49	16.13	15.57	7.69	11.76	NA	10.53	13.51	11.97	11.72	17.89	6.18	0.183210	0.660713
N	alternative_acceptor	NRD1	chr1	-	chr1:52260548-52263920;chr1:52260527-52263920	chr1:52260881-52263920		chr1:52260527-52260547;chr1:52260548-52260880	chr1:52260526-52260527;chr1:52260547-52260548		5.65	3.12	8.33	4.00	1.85	0.00	0.00	1.64	0.00	0.00	2.22	0.00	0.00	0.00	1.39	0.00	2.70	0.00	2.56	4.04	1.30	8.57	5.00	7.14	4.76	5.81	6.02	5.13	3.17	2.70	3.23	6.25	2.70	10.47	6.06	10.40	2.63	3.63	1.00	0.341059	0.709013
N	coord_cassette	ADCY7	chr16	+	chr16:50332943-50338270	chr16:50332943-50334625;chr16:50334785-50334992;chr16:50335126-50338270		chr16:50334626-50334784;chr16:50334993-50335125			97.14	84.21	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.12	NA	NA	93.75	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	97.56	100.00	100.00	0.00	0.625071	0.795482
K	alternative_acceptor	ANKRD13D,RIC8A	chr11	+	chr11:212512-212614	chr11:212512-212596		chr11:212597-212614	chr11:212614-212615		1.49	0.00	1.64	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.79	2.27	0.00	0.00	0.00	0.00	6.25	4.08	2.38	0.00	3.64	0.00	0.00	5.00	5.17	0.00	2.08	0.00	2.44	3.57	0.00	2.08	3.70	1.45	0.00	2.35	2.35	0.362758	0.709013
N	cassette	DERL1	chr8	-	chr8:124033740-124054209	chr8:124033740-124034923;chr8:124035020-124054209		chr8:124034924-124035019			94.87	89.47	96.88	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	100.00	95.92	96.00	100.00	97.14	97.44	NA	100.00	100.00	100.00	100.00	100.00	97.14	92.68	100.00	100.00	100.00	98.25	100.00	98.57	-1.43	0.968828	0.991878
N	jcn_only_AA	ENTPD6	chr20	+	chr20:25204794-25205797;chr20:25204794-25205821	chr20:25204794-25205840		chr20:25205798-25205821;chr20:25205822-25205840	chr20:25205821-25205822;chr20:25205840-25205841		55.00	50.00	59.38	NA	59.09	NA	74.14	66.04	67.31	76.19	80.85	69.23	68.89	63.64	69.81	65.52	85.37	75.00	58.82	51.16	63.64	47.62	58.00	46.15	61.54	68.89	72.73	69.23	61.90	75.00	46.67	57.89	66.67	52.17	55.81	47.22	64.11	59.32	-4.79	0.364251	0.663989
N	cassette	TSC22D4	chr7	-	chr7:100061310-100071896;chr7:100061653-100071896	chr7:100061310-100065174,chr7:100061653-100065174;chr7:100065224-100071896		chr7:100065175-100065223			100.00	96.20	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	93.33	100.00	100.00	100.00	95.16	96.49	100.00	100.00	100.00	93.62	92.98	96.36	100.00	100.00	100.00	100.00	100.00	0.00	0.671038	0.880019
K	alternative_first_exon	PPP2R4	chr9	+	chr9:131901929-131904723;chr9:131904362-131904723;chr9:131904198-131904723;chr9:131902431-131904723	chr9:131899972-131904723	chr9:131901661-131901928;chr9:131904233-131904361;chr9:131903925-131904197;chr9:131902287-131902430	chr9:131899871-131899971			97.85	91.30	85.48	NA	66.67	NA	76.14	98.81	92.11	77.14	70.41	86.05	75.96	100.00	97.27	84.21	78.50	87.10	NA	98.96	93.10	83.33	74.51	88.89	87.50	100.00	90.79	83.33	67.39	91.67	98.04	96.92	86.67	82.61	88.57	87.76	86.67	98.88	12.21	0.007647	0.044387
K	cassette	HRAS	chr11	-	chr11:532756-533452	chr11:532756-533276;chr11:533359-533452		chr11:533277-533358			14.29	13.59	17.65	15.79	16.67	23.73	11.11	10.00	15.38	11.11	16.67	8.33	10.00	10.53	19.23	13.51	17.14	13.33	25.29	21.43	16.67	20.00	26.00	23.08	26.55	NA	15.62	7.14	25.00	14.29	29.17	25.00	17.60	11.54	11.63	19.23	15.60	14.29	-1.31	0.954836	0.987421
K	jcn_only_AD	LMNA	chr1	+	chr1:156108399-156108870	chr1:156108549-156108870		chr1:156108399-156108548	chr1:156108398-156108399		100.00	100.00	100.00	100.00	99.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.50	100.00	99.08	97.87	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	95.08	100.00	100.00	0.00	0.363217	0.657607
N	alternative_last_exon	FLCN,RP11-45M22.4	chr17	-	chr17:17117149-17118298;chr17:17110384-17118298;chr17:17117171-17118298	chr17:17106413-17118298	chr17:17110339-17110383;chr17:17115526-17117170	chr17:17104309-17106412			1.89	3.64	4.55	0.00	2.08	0.00	2.33	0.00	0.00	1.61	0.00	0.00	1.92	0.00	0.00	1.05	0.00	0.00	2.70	2.00	5.00	1.61	1.30	0.00	3.12	1.72	2.27	0.00	1.79	0.00	1.37	1.72	3.70	0.99	1.28	0.00	2.91	1.54	-1.37	0.005035	0.133796
N	alternative_acceptor	STAB1	chr3	+	chr3:52538893-52539033;chr3:52538893-52539018	chr3:52538893-52538999		chr3:52539000-52539018;chr3:52539019-52539033	chr3:52539018-52539019;chr3:52539033-52539034		2.33	1.68	0.00	NA	0.00	0.00	0.33	0.00	0.00	0.23	0.64	0.32	0.65	1.92	0.00	0.72	0.63	0.19	0.00	0.00	NA	0.00	0.53	0.00	5.17	0.00	2.33	0.00	1.61	1.39	NA	0.00	2.33	0.00	1.37	0.40	1.17	0.00	-1.17	0.395095	0.712674
K	intron_retention	DNAJB2	chr2	+	chr2:220149558-220150708				chr2:220149557-220149558;chr2:220150708-220150709		20.55	21.35	20.00	13.64	15.28	NA	6.25	8.57	23.33	11.54	11.11	8.33	7.32	10.34	19.23	9.09	7.50	10.00	16.28	25.00	24.07	15.15	25.00	17.39	22.81	13.64	23.19	17.65	12.50	16.67	32.76	31.65	24.56	20.41	25.71	18.75	18.82	17.09	-1.72	0.794144	1.000000
K	intron_retention	CHMP1B	chr18	+	chr18:11853965-11854101				chr18:11853964-11853965;chr18:11854101-11854102		85.45	100.00	83.56	80.49	80.28	80.00	81.82	95.24	85.71	100.00	83.33	87.50	100.00	82.35	88.24	100.00	76.19	79.17	100.00	92.68	100.00	100.00	89.80	80.00	100.00	82.50	87.04	76.47	84.38	75.00	95.24	91.67	90.24	82.95	86.05	80.39	100.00	89.06	-10.94	0.503688	1.000000
N	cassette	CD44	chr11	+	chr11:35211520-35226058;chr11:35211613-35226058;chr11:35211520-35236398;chr11:35211613-35227658;chr11:35211613-35223217;chr11:35211613-35223214;chr11:35211613-35232792;chr11:35211613-35236398;chr11:35211613-35222192;chr11:35211613-35229651;chr11:35211613-35222628;chr11:35211613-35227661;chr11:35211520-35229651;chr11:35211520-35232792	chr11:35211520-35219667,chr11:35211613-35219667;chr11:35219794-35223217,chr11:35219794-35223214,chr11:35219794-35236398,chr11:35219794-35222628,chr11:35219794-35232792,chr11:35219794-35229651,chr11:35219794-35222192,chr11:35219794-35226058,chr11:35219794-35227661,chr11:35219794-35227658		chr11:35219668-35219793			1.10	0.00	1.05	2.59	1.11	3.01	1.17	1.88	2.26	6.48	1.30	8.03	1.10	2.66	2.31	4.78	1.33	7.82	0.72	1.34	2.18	3.51	1.41	6.05	0.00	1.38	1.73	3.71	0.98	4.69	0.98	1.59	1.87	3.22	1.49	4.30	0.91	1.36	0.45	0.086329	0.649590
K	cassette	TCF25	chr16	+	chr16:89972693-89976998	chr16:89972693-89973650;chr16:89973731-89976998		chr16:89973651-89973730			98.48	100.00	95.40	99.07	98.37	98.55	97.26	100.00	100.00	100.00	100.00	100.00	98.73	100.00	96.72	100.00	100.00	100.00	97.60	92.54	94.19	97.96	99.12	97.78	100.00	100.00	95.51	98.33	97.87	100.00	91.95	97.54	93.90	97.47	95.24	98.70	98.16	99.24	1.08	0.691204	0.886422
N	cassette	STXBP2	chr19	+	chr19:7704694-7705785	chr19:7704694-7705625;chr19:7705696-7705785		chr19:7705626-7705695			100.00	100.00	97.22	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.49	91.38	100.00	100.00	97.73	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	MLX	chr17	+	chr17:40722191-40723564	chr17:40722202-40723564		chr17:40722191-40722201	chr17:40722190-40722191		100.00	100.00	95.92	100.00	100.00	100.00	93.75	95.35	97.06	100.00	100.00	100.00	95.74	97.56	90.24	100.00	92.42	100.00	100.00	100.00	100.00	100.00	92.86	100.00	70.59	88.64	94.74	95.83	100.00	86.67	100.00	90.24	100.00	94.87	94.59	100.00	97.87	98.78	0.91	0.500906	0.753754
N	jcn_only_AA		chr3	+	chr3:183910685-183911078	chr3:183910685-183910889		chr3:183910890-183911078	chr3:183911078-183911079		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	H2AFY	chr5	-	chr5:134696289-134705095;chr5:134696298-134705095;chr5:134696471-134705095	chr5:134696295-134705095		chr5:134696289-134696294;chr5:134696295-134696297;chr5:134696298-134696470	chr5:134696288-134696289;chr5:134696294-134696295;chr5:134696297-134696298		69.12	59.18	64.62	56.52	71.28	58.82	65.92	62.96	66.67	66.88	65.61	66.42	66.67	68.97	64.29	61.67	65.64	66.67	66.67	62.79	60.87	68.12	66.28	63.01	61.54	63.64	65.85	67.69	66.15	69.44	71.43	69.77	72.00	68.09	66.67	69.81	66.30	66.31	0.01	0.640559	0.864909
K	intron_retention	MCOLN1	chr19	+	chr19:7593144-7593482				chr19:7593143-7593144;chr19:7593482-7593483		2.99	1.89	2.27	0.00	0.00	NA	0.78	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	0.86	0.00	9.38	6.12	4.35	4.00	9.62	0.00	23.53	2.50	2.86	0.00	2.86	0.00	4.55	0.00	5.56	2.27	6.38	3.70	3.72	2.75	-0.98	0.966898	1.000000
N	alternative_last_exon	ODF3B	chr22	-	chr22:50962854-50969140	chr22:50968990-50969140	chr22:50961997-50962853	chr22:50968838-50968989			97.80	96.67	92.31	82.61	88.24	92.54	NA	96.30	97.30	NA	NA	NA	95.83	96.83	96.49	90.00	90.91	NA	95.16	96.83	96.19	NA	94.12	NA	97.50	97.52	96.84	86.96	88.89	91.67	96.55	96.81	96.00	88.89	88.89	93.10	96.00	96.83	0.83	0.155748	0.366697
N	jcn_only_AA		chr19	+	chr19:42406507-42406735	chr19:42406507-42406682		chr19:42406683-42406735	chr19:42406735-42406736		97.44	93.98	91.57	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	100.00	100.00	87.50	95.45	96.77	100.00	98.59	95.00	100.00	97.22	94.74	100.00	100.00	100.00	90.00	90.41	89.66	95.92	97.37	96.88	96.99	97.33	0.34	0.602617	0.815545
N	alternative_acceptor	IFI35	chr17	+	chr17:41164295-41164946;chr17:41164295-41165076;chr17:41164295-41164958	chr17:41164295-41165063		chr17:41164947-41164958;chr17:41164959-41165063;chr17:41165064-41165076	chr17:41164958-41164959;chr17:41165063-41165064;chr17:41165076-41165077		95.65	93.75	89.74	100.00	100.00	95.24	100.00	97.08	95.70	100.00	100.00	97.97	100.00	97.44	96.42	96.63	100.00	97.84	95.65	94.95	97.73	95.00	100.00	92.59	94.44	93.65	93.88	92.16	100.00	94.70	94.94	94.96	100.00	87.69	100.00	93.16	97.83	95.30	-2.52	0.254124	0.709013
N	cassette	MLLT6	chr17	+	chr17:36872082-36873684;chr17:36872004-36873684	chr17:36872082-36872619,chr17:36872004-36872619;chr17:36873235-36873684		chr17:36872620-36873234			100.00	100.00	98.02	NA	NA	NA	100.00	98.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.78	NA	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	93.33	NA	98.00	97.96	96.15	100.00	99.42	-0.58	0.184219	0.709176
K	alternative_donor	CDC37	chr19	-	chr19:10503834-10503955	chr19:10503834-10503934		chr19:10503935-10503955	chr19:10503955-10503956		96.00	98.47	94.51	93.57	93.38	93.79	96.25	98.57	92.42	92.66	93.44	93.33	96.77	91.18	89.39	92.21	92.96	89.92	96.23	94.74	94.50	93.08	95.53	94.59	100.00	93.94	94.62	97.02	95.51	95.30	96.55	97.40	96.85	93.50	100.00	94.76	96.81	95.37	-1.44	0.094648	0.488580
N	cassette	DAPK3	chr19	-	chr19:3961160-3963868	chr19:3961160-3963640;chr19:3963668-3963868		chr19:3963641-3963667			90.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	88.24	100.00	100.00	100.00	96.97	100.00	100.00	100.00	93.75	100.00	100.00	100.00	90.00	93.44	80.65	100.00	100.00	97.14	100.00	100.00	0.00	0.656861	0.874582
K	intron_retention		chr14	-	chr14:24615450-24615742				chr14:24615449-24615450;chr14:24615742-24615743		1.83	0.76	3.15	0.00	1.28	0.92	0.00	0.57	2.20	0.83	0.00	2.01	0.00	2.05	2.58	0.67	0.57	2.89	0.00	2.28	0.72	3.28	0.96	6.82	0.00	1.80	2.44	1.39	0.90	2.00	0.92	2.22	0.00	4.00	1.00	4.70	0.00	1.81	1.81	0.034232	1.000000
N	jcn_only_AA	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556658;chr11:62555000-62556573;chr11:62555000-62556597	chr11:62555000-62556494		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		100.00	92.50	94.03	100.00	100.00	NA	96.67	100.00	100.00	96.00	100.00	97.83	100.00	94.59	100.00	95.35	98.77	96.88	95.24	86.96	90.91	100.00	86.76	100.00	NA	100.00	96.23	100.00	90.62	79.31	93.75	80.88	77.42	90.32	92.59	100.00	95.24	97.30	2.06	0.460021	0.721779
N	alternative_donor	ITPA	chr20	+	chr20:3199641-3202486;chr20:3199279-3202486	chr20:3202113-3202486		chr20:3199279-3199640;chr20:3199641-3202112	chr20:3199278-3199279;chr20:3199640-3199641		0.00	0.83	4.35	0.00	1.56	0.00	1.61	7.69	3.33	1.75	1.69	0.00	1.20	0.00	5.13	1.43	1.33	2.38	0.92	0.00	0.00	4.76	2.15	6.45	1.25	0.00	4.35	2.56	4.76	2.56	0.00	5.56	1.03	3.64	4.23	3.45	1.11	0.00	-1.11	0.916552	0.981916
K	intron_retention		chr16	-	chr16:67692266-67692457				chr16:67692265-67692266;chr16:67692457-67692458		8.70	0.00	13.33	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	7.14	5.26	NA	8.33	NA	NA	0.00	13.04	NA	0.00	NA	0.00	4.76	8.33	0.00	8.33	0.00	0.00	3.57	3.57	0.872913	1.000000
K	cassette	ALDH3A2	chr17	+	chr17:19575270-19578870;chr17:19575270-19578808	chr17:19575270-19576463;chr17:19576589-19578808,chr17:19576589-19578870		chr17:19576464-19576588			0.00	6.90	9.09	3.23	5.75	10.00	10.00	11.11	8.33	4.08	5.97	4.35	5.08	NA	6.25	9.52	6.15	0.00	8.11	7.14	6.56	0.00	3.06	6.67	3.57	0.00	7.14	6.06	5.43	5.00	10.00	6.82	4.55	5.41	4.21	2.56	5.99	7.14	1.15	0.792036	0.936947
K	intron_retention		chr14	+	chr14:24648933-24649005				chr14:24648932-24648933;chr14:24649005-24649006		15.52	21.62	15.00	12.50	14.29	8.96	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7.14	10.34	12.50	21.43	14.29	12.00	3.03	11.11	20.00	20.00	NA	21.21	16.18	17.44	12.50	14.29	18.75	19.05	9.82	13.31	3.49	0.792745	1.000000
N	jcn_only_AA	BAX,PTOV1	chr19	+	chr19:50363594-50363889;chr19:50363594-50363870	chr19:50363594-50363822		chr19:50363823-50363870;chr19:50363871-50363889	chr19:50363870-50363871;chr19:50363889-50363890		8.51	5.68	0.00	12.86	10.56	11.21	16.67	10.00	16.67	6.67	11.11	30.77	14.29	7.14	13.04	25.00	16.67	7.69	6.00	8.57	6.45	15.79	8.93	15.38	4.38	0.00	7.27	22.22	11.63	17.50	0.00	2.33	6.52	12.00	9.68	7.14	6.26	7.82	1.56	0.278139	0.663989
K	intron_retention	EEF2	chr19	-	chr19:3980978-3981336				chr19:3980977-3980978;chr19:3981336-3981337		1.65	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	1.09	0.00	0.00	0.23	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.60	6.00	0.24	0.00	0.00	0.00	0.41	0.41	0.930350	1.000000
N	alternative_donor	FAM219B	chr15	-	chr15:90776936-90777150	chr15:90776936-90777066		chr15:90777067-90777150	chr15:90777150-90777151		100.00	94.79	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	0.00	0.363217	0.650093
K	cassette	VSIG4	chrX	-	chrX:65247955-65253315	chrX:65247955-65252309;chrX:65252592-65253315		chrX:65252310-65252591			88.66	82.01	85.90	89.09	85.25	71.88	83.42	87.83	85.45	82.01	83.13	80.77	83.77	86.42	85.71	81.40	82.11	82.98	80.72	82.86	72.22	86.96	86.20	86.69	70.91	87.16	87.40	84.32	83.16	83.97	73.91	81.36	75.26	79.57	76.70	76.36	81.37	86.79	5.42	0.128688	0.709176
K	jcn_only_AD	SMIM19	chr8	+	chr8:42397299-42401611;chr8:42397517-42401611	chr8:42396849-42401611		chr8:42396849-42397298;chr8:42397299-42397516	chr8:42396848-42396849;chr8:42397298-42397299		60.87	26.32	47.50	50.00	50.00	NA	37.93	66.67	54.55	46.15	42.86	75.00	52.38	NA	52.63	NA	50.00	90.00	30.77	60.00	52.38	60.00	58.82	76.92	60.00	50.00	36.59	NA	47.83	NA	41.18	40.00	56.25	44.44	51.61	63.16	45.16	60.00	14.84	0.142632	0.657607
N	jcn_only_AA	FBXW5	chr9	-	chr9:139835916-139835988;chr9:139835855-139835988	chr9:139835930-139835988		chr9:139835855-139835915;chr9:139835916-139835929	chr9:139835854-139835855;chr9:139835915-139835916		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	2.15	0.00	5.45	7.14	0.00	2.17	0.00	5.26	0.00	0.00	5.08	2.20	0.00	5.13	0.00	5.17	0.00	0.00	0.00	0.215129	0.663989
K	jcn_only_AA	ARID5B,ZSWIM8	chr10	+	chr10:75560518-75560842	chr10:75560518-75560774		chr10:75560775-75560842	chr10:75560842-75560843		86.30	80.70	89.39	82.14	90.00	77.78	95.24	91.67	96.15	85.71	94.44	100.00	93.10	93.10	87.10	84.85	100.00	NA	91.67	88.68	83.02	92.68	86.15	82.14	87.88	97.44	90.62	100.00	92.86	100.00	87.34	90.74	93.44	87.50	91.30	83.87	92.38	90.18	-2.21	0.883252	0.956748
N	jcn_only_AA	IFI44	chr1	+	chr1:79121197-79124555;chr1:79121197-79124996	chr1:79121197-79123641		chr1:79123642-79124555;chr1:79124556-79124996	chr1:79124555-79124556;chr1:79124996-79124997		3.82	0.00	0.00	0.00	0.00	3.33	0.00	2.94	1.18	0.00	0.00	7.33	4.88	2.80	3.23	2.48	0.00	4.00	NA	5.98	5.08	0.00	0.00	7.06	NA	5.72	0.00	2.65	0.00	4.86	2.84	3.12	0.00	3.61	0.00	4.23	0.00	3.38	3.38	0.101464	0.663989
N	jcn_only_AA	FERMT3,TBRG1	chr11	+	chr11:63978916-63979116	chr11:63978916-63979047		chr11:63979048-63979116	chr11:63979116-63979117		4.08	1.27	2.16	5.08	1.55	NA	0.00	0.00	0.00	0.69	0.00	0.00	0.00	0.92	0.00	0.78	0.00	0.00	0.00	2.30	1.09	1.78	1.85	0.89	0.00	0.93	1.46	0.00	0.75	0.00	2.78	3.08	0.00	1.02	1.09	2.22	0.00	1.61	1.61	0.044539	0.663989
K	jcn_only_AD	AURKAIP1	chr1	-	chr1:1310171-1310376;chr1:1310171-1310533	chr1:1310171-1310454		chr1:1310377-1310454;chr1:1310455-1310533	chr1:1310454-1310455;chr1:1310533-1310534		0.00	0.00	0.00	2.78	4.84	5.88	5.17	0.00	2.00	6.38	0.00	3.45	2.35	3.03	4.17	4.00	3.45	0.00	2.27	0.00	1.85	3.45	1.27	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	-1.14	0.284917	0.657607
K	intron_retention		chr6	-	chr6:46675899-46677063				chr6:46675898-46675899;chr6:46677063-46677064		3.30	3.66	5.08	2.20	2.66	1.54	0.49	0.28	0.38	0.57	0.92	0.00	0.00	0.43	0.00	0.64	0.87	0.00	0.80	1.18	1.23	1.98	2.40	2.39	5.26	2.81	3.01	1.76	1.69	0.91	1.47	2.90	1.63	4.73	4.33	4.50	1.21	1.32	0.11	0.401762	1.000000
K	intron_retention	CORO7,CORO7-PAM16	chr16	-	chr16:4414415-4414597				chr16:4414414-4414415;chr16:4414597-4414598		1.72	2.08	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.692172	1.000000
K	intron_retention	DCAF15	chr19	+	chr19:14071393-14071751				chr19:14071392-14071393;chr19:14071751-14071752		5.00	0.00	6.06	9.09	4.88	0.00	0.00	0.00	0.00	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	NA	2.44	2.63	0.00	NA	6.38	NA	0.00	0.00	3.23	0.00	0.00	NA	6.38	6.52	6.25	0.00	0.00	4.76	0.00	1.31	1.31	0.999542	1.000000
K	intron_retention		chr1	-	chr1:27995047-27995743				chr1:27995046-27995047;chr1:27995743-27995744		5.38	3.70	0.75	7.50	0.00	5.58	0.57	0.93	0.97	1.23	0.00	4.31	0.00	1.30	1.38	5.19	1.69	4.55	0.00	2.58	0.59	11.76	0.00	10.89	0.00	2.87	0.93	14.91	0.00	5.47	1.61	1.25	0.00	25.44	0.00	9.65	0.00	2.10	2.10	0.352016	1.000000
K	jcn_only_AA	FAM129B	chr9	-	chr9:130270214-130287336	chr9:130286126-130287336					96.99	85.19	96.55	86.67	94.00	NA	99.32	97.43	97.50	99.33	99.25	97.56	97.50	98.62	95.51	98.95	99.05	97.37	NA	97.97	92.31	97.86	95.12	95.77	100.00	95.61	97.11	97.06	95.62	96.88	95.24	96.23	90.91	96.82	98.25	95.12	97.50	97.21	-0.29	0.452333	0.715134
K	intron_retention	APOBR	chr16	+	chr16:28506060-28506419				chr16:28506059-28506060;chr16:28506419-28506420		8.33	7.27	10.26	NA	6.25	NA	0.00	0.00	0.00	4.76	0.00	0.00	7.14	10.81	NA	3.77	8.70	0.00	10.00	9.38	NA	0.00	4.84	13.95	23.33	10.17	10.00	8.57	8.16	7.14	7.14	10.00	10.00	21.43	13.33	10.96	8.63	8.86	0.22	0.976439	1.000000
K	alternative_acceptor	GUK1,TARDBP	chr1	+	chr1:228335246-228335321	chr1:228335246-228335315		chr1:228335316-228335321	chr1:228335321-228335322		100.00	95.32	98.94	92.50	95.82	94.59	100.00	97.65	95.88	95.80	95.26	98.02	96.25	100.00	96.46	98.41	96.52	100.00	96.66	94.74	96.76	96.47	94.61	97.40	100.00	97.06	96.61	97.09	100.00	100.00	95.15	96.00	96.01	96.77	93.94	94.89	96.45	97.36	0.90	0.962905	0.991031
N	alternative_donor	ESYT2	chr7	-	chr7:158529871-158531713	chr7:158529871-158529978		chr7:158529979-158531713	chr7:158531713-158531714		6.06	11.76	5.56	NA	13.04	NA	2.56	4.55	0.00	4.17	4.17	3.45	2.78	0.00	4.76	6.45	5.71	0.00	18.18	4.55	5.88	8.70	6.90	5.26	NA	5.00	2.56	5.26	5.00	NA	5.00	6.67	NA	7.14	3.70	8.57	7.27	4.78	-2.49	0.311684	0.650093
K	intron_retention	GPR108	chr19	-	chr19:6732561-6732997				chr19:6732560-6732561;chr19:6732997-6732998		4.41	7.69	6.02	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	1.64	6.90	0.00	5.08	0.00	NA	0.00	3.51	2.78	4.17	0.00	1.64	6.33	0.00	0.00	8.89	4.76	0.00	0.82	0.82	0.656613	1.000000
K	intron_retention	AP2A1	chr19	+	chr19:50309511-50309937				chr19:50309510-50309511;chr19:50309937-50309938		1.30	1.54	2.00	0.00	1.90	2.38	0.00	1.18	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	1.59	0.00	2.58	4.55	2.06	2.70	4.23	12.50	2.45	0.00	2.04	2.50	1.19	2.78	2.40	4.37	1.43	5.26	2.53	2.86	1.48	1.24	-0.24	0.994817	1.000000
K	intron_retention	IFFO1	chr12	-	chr12:6657324-6657590				chr12:6657323-6657324;chr12:6657590-6657591		61.29	67.14	80.00	NA	73.91	NA	40.91	21.43	NA	NA	46.15	NA	45.24	35.00	38.46	50.00	46.15	NA	52.00	70.59	47.06	NA	72.37	50.00	54.72	60.00	59.38	61.11	64.71	60.00	53.85	60.71	54.55	54.55	71.93	55.56	53.27	56.92	3.65	0.986627	1.000000
K	intron_retention	HNRNPDL	chr4	-	chr4:83347283-83347615				chr4:83347282-83347283;chr4:83347615-83347616		8.93	0.00	12.73	0.00	0.00	3.57	0.00	0.00	0.00	0.44	0.48	0.00	0.72	0.00	1.26	0.33	0.28	0.58	0.00	14.00	0.95	5.71	3.61	8.33	0.00	3.28	4.27	2.40	0.00	1.77	10.53	9.20	0.00	7.48	7.25	7.38	0.00	6.10	6.10	0.107303	1.000000
K	intron_retention		chr2	+	chr2:207025435-207026069				chr2:207025434-207025435;chr2:207026069-207026070		2.13	0.47	2.65	1.02	0.40	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.28	0.38	0.00	0.81	0.00	1.55	1.89	1.17	1.36	0.00	0.00	0.00	0.67	0.75	0.68	12.50	3.80	0.98	0.91	1.13	0.74	0.23	0.00	-0.23	0.595682	1.000000
K	jcn_only_AA	AC005943.2,MBD3	chr19	-	chr19:1578534-1581090	chr19:1578538-1581090		chr19:1578534-1578537	chr19:1578533-1578534		100.00	100.00	95.56	100.00	98.44	100.00	100.00	100.00	100.00	98.61	98.10	100.00	99.14	100.00	100.00	96.51	98.54	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	98.33	95.74	100.00	91.30	97.56	100.00	97.96	97.78	95.59	100.00	100.00	100.00	0.00	0.888165	0.960308
N	alternative_donor	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001969-30002104;chr16:30001127-30002104	chr16:30001919-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		4.55	4.00	7.14	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	6.25	NA	NA	NA	0.00	NA	NA	5.56	0.00	NA	4.55	NA	0.00	0.00	0.00	NA	6.25	NA	0.00	3.33	NA	6.25	3.85	6.25	2.00	2.27	0.27	0.987472	0.996794
N	alternative_acceptor	PSMA1	chr11	-	chr11:14535432-14535948;chr11:14535434-14535948;chr11:14535452-14535948	chr11:14535440-14535948		chr11:14535432-14535433;chr11:14535434-14535439;chr11:14535440-14535451	chr11:14535431-14535432;chr11:14535433-14535434;chr11:14535439-14535440		1.56	3.33	2.22	3.85	1.96	8.33	0.00	1.08	0.00	0.00	0.76	0.93	0.00	1.09	0.89	0.66	0.68	0.00	0.00	1.72	1.72	1.35	2.04	2.33	NA	2.41	1.05	2.74	1.49	2.78	3.92	2.70	0.00	2.61	1.83	2.33	0.00	1.64	1.64	0.147060	0.651394
K	intron_retention	MYO1F	chr19	-	chr19:8613202-8614478				chr19:8613201-8613202;chr19:8614478-8614479		0.00	1.46	0.27	9.09	1.59	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.76	1.64	0.00	1.69	0.00	6.58	0.00	0.00	0.00	0.97	0.00	0.00	0.85	6.90	0.00	0.81	0.00	2.16	0.00	-2.16	0.289298	1.000000
N	alternative_donor	RNF220	chr1	+	chr1:45104088-45110369;chr1:45105258-45110369	chr1:45101835-45110369		chr1:45101835-45104087;chr1:45104088-45105257	chr1:45101834-45101835;chr1:45104087-45104088		100.00	97.26	97.73	NA	100.00	NA	98.95	100.00	100.00	100.00	97.62	100.00	97.87	100.00	100.00	100.00	97.96	100.00	93.10	100.00	92.00	100.00	100.00	96.43	95.56	100.00	96.88	100.00	98.00	100.00	100.00	100.00	93.33	100.00	95.65	94.87	96.41	100.00	3.59	0.010114	0.213240
K	alternative_acceptor	TCN2	chr22	+	chr22:31007051-31008871	chr22:31007051-31008859		chr22:31008860-31008871	chr22:31008871-31008872		100.00	93.33	100.00	NA	100.00	NA	82.19	88.65	100.00	100.00	87.50	86.84	87.50	86.15	100.00	89.58	100.00	100.00	NA	90.91	NA	89.47	97.14	100.00	100.00	90.41	89.66	92.00	93.55	95.00	100.00	100.00	NA	92.31	89.29	93.44	90.41	90.66	0.25	0.686164	0.881898
K	cassette	SNRPG	chr2	-	chr2:70515325-70520749	chr2:70515325-70516481;chr2:70516505-70520749		chr2:70516482-70516504			89.69	86.55	90.77	98.39	94.63	97.41	90.32	92.41	94.55	94.61	94.47	95.59	94.71	95.51	91.53	94.16	93.10	93.40	91.96	92.55	90.62	92.65	93.25	90.52	86.67	88.71	89.29	93.23	92.16	92.74	91.23	91.33	86.61	96.30	95.39	93.66	88.50	91.82	3.32	0.228272	0.709176
N	alternative_acceptor	FRA10AC1	chr10	-	chr10:95435459-95436409;chr10:95430606-95436409	chr10:95431847-95436409		chr10:95430606-95431846;chr10:95431847-95435458	chr10:95430605-95430606;chr10:95431846-95431847		5.56	1.28	5.26	0.00	3.03	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	2.78	0.00	2.22	NA	6.67	NA	1.64	0.00	3.70	NA	5.00	0.00	5.88	2.78	0.00	6.25	3.57	5.88	0.64	2.78	2.14	0.336908	0.709013
K	intron_retention		chr6	-	chr6:34214927-34215243				chr6:34214926-34214927;chr6:34215243-34215244		3.23	0.00	0.00	16.67	2.56	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	4.44	NA	0.00	5.88	0.00	0.00	0.00	0.00	7.89	4.76	0.00	7.69	0.00	7.69	0.00	1.61	1.61	0.474712	1.000000
K	cassette	GAS5	chr1	-	chr1:173833443-173833812	chr1:173833443-173833621;chr1:173833645-173833812		chr1:173833622-173833644			95.00	98.93	97.83	99.24	98.88	97.73	100.00	NA	97.78	100.00	100.00	100.00	98.18	NA	100.00	100.00	100.00	NA	96.13	93.33	96.81	96.47	100.00	98.18	96.67	100.00	100.00	97.67	97.65	97.22	91.67	94.83	93.40	95.51	97.85	95.89	97.43	94.16	-3.26	0.329233	0.709176
K	intron_retention	SIGIRR	chr11	-	chr11:406060-406348				chr11:406059-406060;chr11:406348-406349		16.67	14.17	12.00	0.00	5.08	2.22	4.88	8.33	0.00	0.00	0.00	0.00	7.50	0.00	0.00	0.00	3.33	0.00	14.44	13.33	8.57	0.00	8.82	0.00	8.07	8.33	7.14	0.00	8.16	4.76	9.09	5.26	9.21	NA	12.50	7.69	8.64	8.71	0.07	0.988117	1.000000
N	cassette	NADK	chr1	-	chr1:1685089-1685722;chr1:1684500-1685722	chr1:1684500-1685489,chr1:1685089-1685489;chr1:1685648-1685722		chr1:1685490-1685647			91.72	80.36	93.75	77.78	100.00	95.92	97.22	96.20	97.50	94.59	98.51	100.00	96.94	96.52	97.50	93.75	100.00	100.00	77.55	90.48	89.71	82.61	81.48	97.37	76.92	94.47	89.29	85.71	83.87	97.85	91.20	89.34	77.27	90.91	91.18	95.12	78.95	93.09	14.14	0.076272	0.640086
K	jcn_only_AD	LILRB1	chr19	+	chr19:55144696-55145088	chr19:55144770-55145088		chr19:55144696-55144769	chr19:55144695-55144696		95.06	100.00	93.75	100.00	NA	100.00	100.00	96.07	97.32	93.66	98.70	94.51	100.00	96.29	100.00	97.37	100.00	94.52	100.00	93.33	94.37	86.67	100.00	86.30	100.00	95.41	95.16	100.00	100.00	85.71	95.47	95.78	86.67	92.73	92.11	90.45	100.00	95.44	-4.56	0.315080	0.657607
K	intron_retention	GOLGB1	chr3	-	chr3:121383462-121383772				chr3:121383461-121383462;chr3:121383772-121383773		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	C17orf62	chr17	-	chr17:80402468-80403739				chr17:80402467-80402468;chr17:80403739-80403740		4.44	3.88	5.24	0.00	1.92	7.69	0.85	0.98	0.76	6.45	4.08	7.69	3.10	1.04	2.06	7.50	4.17	6.25	2.27	3.60	3.33	0.00	5.95	6.25	2.38	5.65	3.96	6.38	3.28	5.71	3.41	2.65	0.00	0.00	3.12	7.14	2.33	3.50	1.18	0.799388	1.000000
N	alternative_donor	PSMF1	chr20	+	chr20:1099432-1106140	chr20:1099546-1106140		chr20:1099432-1099545	chr20:1099431-1099432		97.62	100.00	100.00	NA	94.44	NA	100.00	100.00	98.92	97.83	100.00	100.00	97.30	100.00	100.00	100.00	95.16	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.960991	0.986696
K	cassette	FEZ2	chr2	-	chr2:36785657-36805739	chr2:36785657-36787927;chr2:36788009-36805739		chr2:36787928-36788008			5.56	NA	10.71	NA	8.33	NA	14.71	8.00	2.63	11.11	13.56	14.63	11.76	17.14	11.43	10.64	12.07	10.71	0.00	10.26	0.00	17.39	12.82	12.50	NA	9.09	3.45	17.65	15.00	9.09	9.09	14.29	14.29	9.68	7.58	10.71	13.02	9.09	-3.93	0.934187	0.983467
N	alternative_acceptor	GPX4	chr19	+	chr19:1106266-1106376;chr19:1106266-1106362;chr19:1106266-1106413	chr19:1106266-1106398		chr19:1106363-1106376;chr19:1106377-1106398;chr19:1106399-1106413	chr19:1106376-1106377;chr19:1106398-1106399;chr19:1106413-1106414		94.63	96.53	97.00	97.57	98.39	97.59	98.88	100.00	98.39	98.67	99.36	98.81	98.98	99.30	97.90	99.07	99.64	99.26	97.07	97.27	97.21	98.28	98.15	98.03	97.30	96.64	97.16	98.91	98.50	98.81	94.38	94.91	94.95	97.54	96.92	98.10	97.19	96.95	-0.23	0.831491	0.940678
K	jcn_only_AA	NUDT21	chr16	-	chr16:56468742-56473568	chr16:56473409-56473568		chr16:56468742-56473408	chr16:56468741-56468742		0.00	0.00	0.00	0.00	0.00	0.00	7.50	0.00	2.17	0.00	0.00	0.00	0.00	8.00	0.00	0.00	1.64	0.00	4.76	11.11	2.94	0.00	0.00	0.00	NA	0.00	4.00	0.00	0.00	0.00	6.25	4.35	13.33	0.00	0.00	5.00	4.76	3.12	-1.63	0.787777	0.908316
K	intron_retention	MDM2	chr12	+	chr12:69237613-69237713				chr12:69237612-69237613;chr12:69237713-69237714		88.06	88.31	93.09	88.67	87.84	89.44	92.86	94.03	91.96	93.22	94.44	91.18	88.00	90.54	91.87	84.81	95.92	97.50	89.69	90.83	94.00	91.16	91.60	87.50	91.27	95.42	91.22	93.85	87.50	85.90	92.27	92.38	90.49	90.47	89.15	86.72	90.09	91.55	1.46	0.519049	1.000000
N	alternative_acceptor	CENPO	chr2	+	chr2:220073772-220074087	chr2:220073772-220073983		chr2:220073984-220074087	chr2:220074087-220074088		100.00	100.00	100.00	100.00	98.21	100.00	100.00	NA	NA	100.00	100.00	NA	93.55	91.67	100.00	100.00	100.00	NA	100.00	100.00	98.08	NA	97.06	NA	100.00	95.24	100.00	100.00	100.00	NA	100.00	100.00	97.50	100.00	96.30	100.00	100.00	100.00	0.00	0.592800	0.844088
N	alternative_last_exon		chr17	+	chr17:37818598-37821968	chr17:37818598-37819056	chr17:37821969-37822808	chr17:37819057-37819737			98.37	96.88	100.00	99.04	99.29	99.38	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.45	98.91	97.95	98.31	97.84	97.73	99.52	98.95	97.14	100.00	99.39	100.00	99.25	98.78	93.51	98.86	97.37	98.94	98.98	99.10	0.11	0.310161	0.513281
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67810499-67810930;chr11:67810499-67810924;chr11:67810499-67810822;chr11:67810499-67811037	chr11:67810499-67810837					96.83	91.67	94.95	NA	94.74	NA	99.03	100.00	98.21	97.30	96.00	100.00	99.07	100.00	97.83	100.00	93.18	100.00	NA	90.80	96.55	86.36	100.00	93.75	100.00	98.13	98.21	100.00	97.87	94.74	93.75	96.15	90.91	100.00	97.30	90.00	99.03	97.48	-1.55	0.861501	0.944686
N	jcn_only_AA	EVL	chr14	+	chr14:100608131-100608344;chr14:100608131-100610044;chr14:100608131-100610037	chr14:100608131-100610350		chr14:100608345-100610037;chr14:100610038-100610044;chr14:100610045-100610350	chr14:100610037-100610038;chr14:100610044-100610045;chr14:100610350-100610351		0.00	0.00	NA	7.14	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_first_exon	MVP	chr16	+	chr16:29832713-29841835,chr16:29840984-29841835;chr16:29831224-29841835	chr16:29831832-29841835	chr16:29830876-29831223	chr16:29831715-29831831			86.21	19.23	83.33	NA	25.00	NA	71.19	92.54	95.16	96.97	83.82	98.33	58.82	98.48	92.31	85.00	92.59	96.88	10.53	92.86	58.82	76.47	68.29	96.43	NA	98.04	85.71	85.71	67.50	96.55	90.00	81.25	12.50	82.61	63.64	91.49	19.23	92.70	73.47	0.009325	0.052974
K	alternative_donor	MRPL20,SMIM12	chr1	-	chr1:35321584-35325252;chr1:35321584-35325277	chr1:35321584-35325055		chr1:35325056-35325252;chr1:35325253-35325277	chr1:35325252-35325253;chr1:35325277-35325278		7.14	7.69	0.00	0.00	7.14	0.00	5.00	2.50	6.67	10.91	7.84	6.82	8.11	7.50	10.20	12.33	11.11	11.43	0.00	5.88	4.35	8.33	7.69	3.85	NA	0.00	0.00	6.45	7.32	6.06	4.35	0.00	0.00	11.11	5.00	9.52	5.00	5.12	0.12	0.856197	0.960074
N	jcn_only_AD	ARHGAP15	chr2	+	chr2:144463158-144525557;chr2:144464157-144525557	chr2:144461094-144525557		chr2:144461094-144463157;chr2:144463158-144464156	chr2:144461093-144461094;chr2:144463157-144463158		97.06	100.00	98.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	0.00	0.363217	0.657607
K	alternative_donor	ROMO1	chr20	+	chr20:34287417-34287554;chr20:34287379-34287554	chr20:34287374-34287554		chr20:34287374-34287378;chr20:34287379-34287416	chr20:34287373-34287374;chr20:34287378-34287379		56.76	47.42	51.72	53.33	50.00	43.44	45.76	48.78	47.06	43.75	47.37	54.72	43.59	45.16	54.76	47.50	41.43	40.00	49.70	51.35	48.15	54.55	54.93	37.93	52.73	50.00	48.15	48.28	47.92	43.14	57.41	55.32	47.30	45.83	40.00	43.59	47.36	50.67	3.31	0.135736	0.549706
K	intron_retention		chr11	+	chr11:63998413-63999342				chr11:63998412-63998413;chr11:63999342-63999343		3.33	1.85	2.22	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	10.53	0.00	0.00	7.14	3.70	0.00	0.00	0.00	6.82	0.00	2.86	0.00	0.00	3.33	0.00	0.00	8.00	0.00	2.40	0.00	-2.40	0.514561	1.000000
K	intron_retention	C1orf162	chr1	+	chr1:112020398-112020604				chr1:112020397-112020398;chr1:112020604-112020605		6.67	9.13	15.24	3.33	17.82	0.00	1.97	0.00	0.00	0.00	1.67	0.00	1.04	0.00	NA	0.00	1.80	0.00	5.98	14.29	5.45	0.00	17.58	0.00	4.55	16.00	10.57	4.00	13.90	0.00	11.76	15.28	7.64	1.59	14.58	0.00	5.27	9.21	3.95	0.881089	1.000000
N	alternative_last_exon	ACP2	chr11	-	chr11:47266810-47267024	chr11:47266946-47267024	chr11:47266450-47266809	chr11:47266856-47266945			94.02	91.67	92.26	NA	96.30	NA	97.50	98.65	98.98	99.06	97.95	100.00	98.61	97.91	97.63	97.62	97.58	98.11	90.91	93.28	94.12	91.89	92.00	95.56	NA	95.45	95.48	90.91	93.55	92.00	95.88	95.73	86.67	95.00	92.05	93.27	91.67	95.66	3.99	0.290346	0.491468
K	intron_retention	TMEM183A	chr1	+	chr1:202984177-202985087				chr1:202984176-202984177;chr1:202985087-202985088		4.88	0.00	4.48	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	3.33	0.00	0.00	3.85	8.70	0.00	0.00	8.11	0.00	0.00	0.00	5.26	4.35	0.00	2.44	7.69	1.59	0.00	1.67	1.67	0.482229	1.000000
N	alternative_donor		chr6	-	chr6:33262540-33262772	chr6:33262540-33262753		chr6:33262754-33262772	chr6:33262772-33262773		95.65	84.00	96.67	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	NA	NA	NA	89.47	NA	NA	84.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	92.31	92.31	93.33	90.00	90.91	100.00	97.83	-2.17	0.808520	0.938259
K	intron_retention	PTOV1	chr19	+	chr19:50361040-50361160				chr19:50361039-50361040;chr19:50361160-50361161		20.55	9.93	20.93	11.76	11.49	0.00	4.08	0.00	12.50	0.00	2.13	0.00	3.70	4.00	16.13	5.88	3.92	0.00	5.26	30.56	11.86	15.38	20.00	10.71	7.69	16.67	15.84	8.82	13.43	3.03	29.03	23.33	8.75	34.29	26.15	20.83	6.47	18.61	12.13	0.236935	1.000000
N	jcn_only_AD	BIN1	chr2	-	chr2:127821595-127822176;chr2:127821595-127826499;chr2:127821595-127825738;chr2:127821595-127822125;chr2:127821595-127822349	chr2:127821595-127824271					5.26	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	6.67	12.50	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.221949	0.657607
N	alternative_acceptor	RNF31,RP11-468E2.4	chr14	+	chr14:24621202-24624365	chr14:24621202-24624161		chr14:24624162-24624365	chr14:24624365-24624366		2.78	4.35	6.78	NA	5.88	8.33	0.00	4.65	0.00	0.00	0.00	0.00	0.00	0.00	4.00	4.00	3.57	0.00	NA	3.28	3.33	0.00	9.09	6.25	0.00	1.92	2.17	0.00	0.00	2.04	4.84	5.41	0.00	5.00	8.33	5.62	0.00	3.03	3.03	0.109730	0.600665
K	intron_retention	HPS1	chr10	-	chr10:100185743-100186971				chr10:100185742-100185743;chr10:100186971-100186972		5.88	11.11	5.66	NA	2.63	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.00	0.00	0.00	3.12	5.88	3.03	4.26	1.96	30.00	7.89	7.02	0.00	2.86	0.00	0.00	3.64	0.00	4.92	2.44	6.94	0.59	1.56	0.97	0.792633	1.000000
N	alternative_acceptor	PRELID1	chr5	+	chr5:176733178-176733385;chr5:176733178-176733363;chr5:176733178-176733372;chr5:176733178-176733422	chr5:176733178-176733455		chr5:176733364-176733372;chr5:176733373-176733385;chr5:176733386-176733422;chr5:176733423-176733455	chr5:176733372-176733373;chr5:176733385-176733386;chr5:176733422-176733423;chr5:176733455-176733456		3.45	4.72	2.85	5.74	5.19	4.45	7.03	5.71	4.91	0.00	0.00	0.00	5.30	0.00	4.93	5.41	5.58	7.03	9.50	7.01	10.59	0.00	9.47	7.43	3.70	0.00	3.97	8.28	6.21	8.00	6.90	6.37	10.96	4.31	3.70	4.96	6.17	4.58	-1.58	0.117814	0.606219
K	cassette	BCKDK	chr16	+	chr16:31122541-31123189	chr16:31122541-31122620;chr16:31122711-31123189		chr16:31122621-31122710			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.948252	0.987421
K	alternative_last_exon	PIGC	chr1	-	chr1:172411986-172413127;chr1:172384515-172413127	chr1:172411971-172413127	chr1:172384434-172384514	chr1:172410597-172411970			100.00	100.00	100.00	NA	95.24	NA	97.37	100.00	100.00	100.00	97.37	100.00	100.00	96.55	100.00	96.43	97.56	100.00	100.00	94.12	100.00	100.00	100.00	NA	NA	100.00	100.00	92.31	96.55	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.351237	0.535374
N	coord_cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28990793-28994177	chr16:28990793-28993221;chr16:28993378-28993676;chr16:28993867-28994177		chr16:28993222-28993377;chr16:28993677-28993866		chr16:28990726-28990792;chr16:28994178-28994243	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	98.00	96.15	100.00	100.00	100.00	93.02	93.55	100.00	96.55	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	SIPA1	chr11	+	chr11:65415130-65416732;chr11:65415083-65416732	chr11:65416647-65416732		chr11:65415083-65415129;chr11:65415130-65416646	chr11:65415082-65415083;chr11:65415129-65415130		4.84	2.50	6.67	NA	5.56	10.00	0.00	2.70	0.00	NA	5.00	NA	1.89	0.00	3.45	0.00	0.00	NA	2.94	3.70	1.61	NA	7.14	NA	3.39	4.26	5.26	9.09	12.50	NA	6.06	5.45	2.27	NA	10.00	9.09	2.38	3.98	1.60	0.183391	0.563271
K	jcn_only_AA	CPSF4	chr7	+	chr7:99050064-99051588;chr7:99050064-99051663	chr7:99050064-99051666		chr7:99051589-99051663;chr7:99051664-99051666	chr7:99051663-99051664;chr7:99051666-99051667		18.75	31.25	17.65	NA	NA	NA	11.76	25.00	11.11	20.69	15.38	NA	19.23	NA	10.53	15.00	20.69	NA	NA	26.67	21.43	NA	35.71	NA	NA	0.00	17.86	NA	9.09	NA	NA	19.23	18.18	36.36	25.00	NA	18.70	21.88	3.17	0.746671	0.887098
K	intron_retention	LMNA	chr1	+	chr1:156107535-156108278				chr1:156107534-156107535;chr1:156108278-156108279		52.13	78.27	36.17	73.88	58.44	89.70	35.63	32.10	31.58	25.00	15.95	31.82	34.91	37.50	35.29	25.33	21.05	29.09	75.93	33.78	75.61	33.56	34.44	33.33	88.41	39.42	38.71	47.33	43.91	68.18	36.11	29.55	77.19	32.32	38.68	37.35	76.56	36.80	-39.76	0.832083	1.000000
K	jcn_only_AD	NOL3	chr16	+	chr16:67208848-67208949	chr16:67208850-67208949		chr16:67208848-67208849	chr16:67208847-67208848		9.52	0.00	8.70	NA	0.00	0.00	NA	9.09	4.76	NA	NA	NA	NA	0.00	9.09	NA	NA	NA	3.57	7.69	3.45	NA	0.00	NA	0.00	10.00	6.45	NA	0.00	6.67	0.00	0.00	8.70	0.00	7.69	0.00	1.78	8.39	6.61	0.325278	0.657607
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100961819-100962534;chr9:100961871-100962534	chr9:100961867-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		3.57	0.00	8.00	7.69	9.09	NA	10.53	5.26	8.33	4.76	2.22	NA	13.64	6.67	NA	14.29	5.26	NA	15.79	7.14	13.95	10.00	5.88	NA	0.00	10.34	12.00	12.50	14.47	NA	11.27	14.63	9.52	8.82	6.82	10.00	10.02	6.90	-3.12	0.780915	0.917646
N	cassette	CLPP	chr19	+	chr19:6364651-6368548	chr19:6364651-6366268;chr19:6366375-6368548		chr19:6366269-6366374			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.05	91.67	97.30	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	95.45	96.61	100.00	100.00	100.00	100.00	100.00	0.00	0.188317	0.709176
K	jcn_only_AA	CTC-459F4.3,PRPF31	chr19	+	chr19:54629993-54631465	chr19:54629993-54631447		chr19:54631448-54631465	chr19:54631465-54631466		88.46	94.25	90.24	100.00	98.25	100.00	100.00	NA	100.00	100.00	93.75	100.00	100.00	NA	94.12	92.86	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	88.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	97.56	100.00	2.44	0.822998	0.929366
K	alternative_first_exon	PCBP1-AS1	chr2	-	chr2:70312757-70313383,chr2:70312757-70313255,chr2:70312757-70313186,chr2:70312757-70312947;chr2:70312757-70315561;chr2:70312757-70314919;chr2:70312757-70314204;chr2:70312757-70314109	chr2:70312757-70315729	chr2:70313384-70313405;chr2:70315562-70315686;chr2:70314920-70315039;chr2:70314205-70314452;chr2:70314110-70314147	chr2:70315730-70315978			65.88	84.19	64.36	81.25	78.15	90.91	56.08	54.55	53.68	48.86	53.03	53.46	56.17	54.93	57.36	56.32	48.49	47.10	83.66	62.24	76.92	61.47	65.13	57.89	84.27	66.46	65.38	63.07	66.83	70.85	72.44	63.75	84.42	59.13	66.04	62.96	83.92	64.06	-19.86	0.107712	0.279216
K	intron_retention	EZH2	chr7	-	chr7:148504799-148506162				chr7:148504798-148504799;chr7:148506162-148506163		0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	1.52	2.56	0.00	0.88	7.50	0.00	0.00	0.00	0.00	0.00	2.08	1.18	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.696277	1.000000
N	alternative_acceptor	GGA1,NCAPH2	chr22	+	chr22:50956482-50956561	chr22:50956482-50956556		chr22:50956557-50956561	chr22:50956561-50956562		5.13	0.00	0.00	5.56	2.50	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	3.70	4.35	0.00	0.00	4.65	0.00	0.00	4.76	0.00	7.69	0.00	NA	2.78	7.89	5.88	5.56	3.03	10.00	0.00	4.55	4.55	0.056927	0.570243
K	cassette	SURF1	chr9	-	chr9:136221813-136223275	chr9:136221813-136223123;chr9:136223176-136223275		chr9:136223124-136223175			100.00	100.00	100.00	NA	94.74	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.44	100.00	100.00	NA	96.00	NA	100.00	92.31	100.00	NA	100.00	NA	92.86	100.00	90.48	100.00	100.00	100.00	100.00	96.43	-3.57	0.674875	0.882035
N	jcn_only_AD	NTMT1	chr9	+	chr9:132396586-132397486;chr9:132396429-132397486	chr9:132396501-132397486		chr9:132396429-132396500;chr9:132396501-132396585	chr9:132396428-132396429;chr9:132396500-132396501		12.50	15.58	10.34	17.14	12.36	13.95	17.86	18.18	15.62	16.67	22.50	20.00	11.90	NA	15.38	16.28	24.49	NA	17.57	16.67	20.00	12.50	15.00	0.00	28.07	8.33	15.38	11.11	12.50	16.67	19.05	9.38	16.67	15.79	9.38	15.38	17.12	16.67	-0.45	0.341084	0.657607
N	jcn_only_AD	TBC1D2	chr9	-	chr9:100975501-100982432;chr9:100975501-100983114	chr9:100975501-100976364		chr9:100976365-100982432;chr9:100982433-100983114	chr9:100982432-100982433;chr9:100983114-100983115		0.00	0.00	4.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	5.00	1.14	NA	0.00	2.08	0.00	7.69	1.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	BORCS8,BORCS8-MEF2B	chr19	-	chr19:19261574-19293381	chr19:19261574-19291494;chr19:19291571-19293381		chr19:19291495-19291570			83.33	100.00	73.68	NA	94.12	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	83.33	100.00	93.33	NA	100.00	NA	NA	100.00	72.22	NA	100.00	100.00	100.00	88.89	75.00	83.33	100.00	100.00	100.00	100.00	0.00	0.386240	0.709410
K	jcn_only_AD	SLC39A7	chr6	+	chr6:33168716-33169521	chr6:33169434-33169521		chr6:33168716-33169433	chr6:33168715-33168716		100.00	100.00	96.92	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.38	100.00	100.00	100.00	93.10	95.00	100.00	97.22	98.18	100.00	100.00	100.00	0.00	0.363217	0.657607
K	alternative_acceptor	C12orf57	chr12	+	chr12:7053337-7053638	chr12:7053337-7053542		chr12:7053543-7053638	chr12:7053638-7053639		15.38	8.57	10.81	20.00	7.89	17.74	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	0.00	10.00	6.67	13.64	10.34	31.58	12.50	16.67	2.50	7.69	7.69	0.00	5.00	15.38	18.18	14.58	7.41	23.08	9.52	17.39	4.58	14.51	9.93	0.013150	0.475765
N	cassette	NCOA6	chr20	-	chr20:33303170-33320362	chr20:33303170-33315062;chr20:33315212-33320362		chr20:33315063-33315211			93.33	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	91.43	100.00	91.67	100.00	100.00	100.00	86.36	100.00	100.00	100.00	100.00	100.00	0.00	0.467921	0.765729
N	alternative_acceptor	TMEM180	chr10	+	chr10:104230875-104231029	chr10:104230875-104231004		chr10:104231005-104231029	chr10:104231029-104231030		11.76	0.00	NA	NA	NA	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	15.38	30.00	NA	NA	11.76	NA	0.00	7.69	6.67	NA	0.00	NA	NA	16.67	NA	NA	16.67	NA	0.00	7.69	7.69	0.399674	0.716354
K	alternative_last_exon	SRP9	chr1	+	chr1:225971071-225975672,chr1:225971071-225976960;chr1:225971071-225974563;chr1:225971071-225976735	chr1:225971071-225976941	chr1:225974564-225974687;chr1:225976736-225976843	chr1:225976942-225978168			94.96	96.10	88.51	98.36	98.68	100.00	92.73	90.44	89.51	96.81	95.62	97.08	92.31	88.71	82.39	92.92	93.79	95.27	98.88	94.25	99.04	98.95	94.65	93.07	100.00	90.00	93.98	96.94	97.13	99.15	93.88	92.45	98.85	95.77	94.74	97.22	97.47	92.16	-5.31	0.029332	0.217248
K	intron_retention		chr16	+	chr16:31382536-31382654				chr16:31382535-31382536;chr16:31382654-31382655		13.56	16.67	23.21	18.75	16.67	NA	1.97	1.67	0.00	1.45	1.94	0.74	2.86	2.86	9.52	4.27	3.70	1.10	18.75	15.56	9.38	14.29	30.77	18.92	28.57	3.28	14.00	8.85	19.51	0.00	7.69	14.63	14.29	16.67	23.75	7.65	15.48	5.49	-10.00	0.885096	1.000000
N	alternative_donor	ZNF592	chr15	+	chr15:85343209-85345093	chr15:85344835-85345093		chr15:85343209-85344834	chr15:85343208-85343209		4.17	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	4.17	0.00	4.35	0.00	0.00	6.25	0.00	6.67	3.57	9.09	0.00	8.33	5.00	10.00	3.85	0.00	5.56	6.45	0.00	13.33	5.26	7.69	0.00	4.87	4.87	0.059456	0.421463
K	alternative_donor	STARD3	chr17	+	chr17:37814093-37814225	chr17:37814106-37814225		chr17:37814093-37814105	chr17:37814092-37814093		87.50	90.32	75.00	NA	80.95	NA	90.70	92.31	86.96	78.57	90.91	92.86	89.80	84.00	81.25	86.67	90.32	NA	NA	83.33	78.57	75.00	78.79	88.24	100.00	88.46	81.08	81.82	87.50	NA	82.35	87.18	80.00	70.83	73.53	76.00	90.32	85.75	-4.57	0.318722	0.650093
N	jcn_only_AA	NAGLU	chr17	+	chr17:40693225-40695218;chr17:40693225-40695101	chr17:40693225-40695045		chr17:40695046-40695101;chr17:40695102-40695218	chr17:40695101-40695102;chr17:40695218-40695219		NA	100.00	NA	NA	100.00	NA	98.84	96.88	100.00	96.97	97.22	100.00	98.25	100.00	100.00	96.55	94.74	95.24	100.00	100.00	100.00	94.12	100.00	NA	NA	100.00	100.00	95.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	99.42	100.00	0.58	0.955581	0.984403
N	alternative_donor	ADRBK2	chr22	+	chr22:26110329-26114211	chr22:26110538-26114211		chr22:26110329-26110537	chr22:26110328-26110329		92.86	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657675
N	jcn_only_AA	ANKFY1	chr17	-	chr17:4070488-4072491;chr17:4067468-4072491	chr17:4071206-4072491		chr17:4067468-4070487;chr17:4070488-4071205	chr17:4067467-4067468;chr17:4070487-4070488		85.71	100.00	100.00	NA	NA	NA	97.92	96.63	93.75	100.00	91.18	100.00	100.00	95.59	100.00	91.43	93.10	94.74	NA	97.62	NA	NA	NA	94.74	NA	90.48	100.00	84.62	NA	81.25	94.12	100.00	81.82	93.75	95.00	92.31	98.96	94.86	-4.11	0.757197	0.891694
K	intron_retention	DNAJC2	chr7	-	chr7:102953091-102953393				chr7:102953090-102953091;chr7:102953393-102953394		9.52	1.98	8.82	0.96	1.77	0.88	5.88	0.00	NA	10.53	18.75	NA	18.75	0.00	NA	0.00	14.29	NA	3.81	0.00	2.25	1.67	4.23	2.78	2.83	0.00	7.69	0.00	2.63	0.00	0.00	1.72	2.08	2.99	0.00	2.56	3.32	0.00	-3.32	0.607171	1.000000
K	intron_retention	ARHGAP27	chr17	-	chr17:43474391-43475314				chr17:43474390-43474391;chr17:43475314-43475315		14.00	0.00	8.11	NA	NA	NA	5.71	2.17	3.57	0.00	2.86	2.17	6.56	2.05	0.00	0.00	3.03	3.23	NA	4.84	NA	NA	5.88	7.14	13.33	7.53	11.11	20.00	7.14	8.33	17.24	6.67	NA	11.11	9.38	8.33	6.13	6.19	0.05	0.999017	1.000000
N	alternative_acceptor	NR1H2	chr19	+	chr19:50882054-50882348;chr19:50882054-50882390;chr19:50882054-50882343	chr19:50882054-50882258		chr19:50882259-50882343;chr19:50882344-50882348;chr19:50882349-50882390	chr19:50882343-50882344;chr19:50882348-50882349;chr19:50882390-50882391		95.08	89.29	95.24	92.59	94.64	89.47	94.12	100.00	97.47	91.84	87.14	93.94	96.55	94.12	96.97	88.52	86.36	86.21	89.29	100.00	100.00	96.55	92.31	100.00	100.00	94.55	96.83	94.87	90.62	90.00	100.00	95.83	91.89	96.00	100.00	94.55	93.00	97.54	4.53	0.108869	0.600043
K	cassette	ACOT8	chr20	-	chr20:44470596-44472901	chr20:44470596-44472165;chr20:44472361-44472901		chr20:44472166-44472360			88.24	84.51	100.00	100.00	94.12	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	95.71	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	91.67	93.06	NA	100.00	100.00	97.85	100.00	2.15	0.706997	0.894382
K	jcn_only_AA	MED29	chr19	+	chr19:39883163-39884192	chr19:39883163-39883291					0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	5.88	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AD	EIF2B5	chr3	+	chr3:183860167-183860289	chr3:183860183-183860289		chr3:183860167-183860182	chr3:183860166-183860167		0.00	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	2.50	0.00	2.22	0.00	0.00	11.11	3.57	9.09	8.57	12.50	0.00	6.67	7.69	4.00	6.25	18.18	0.00	3.12	0.00	0.00	8.82	6.25	0.00	0.00	0.00	0.190937	0.657607
N	alternative_acceptor	ARAP1	chr11	-	chr11:72423385-72423482;chr11:72423343-72423482	chr11:72423367-72423482		chr11:72423343-72423366;chr11:72423367-72423384	chr11:72423342-72423343;chr11:72423366-72423367		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	1.82	NA	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	SHISA5	chr3	-	chr3:48510382-48510421				chr3:48510381-48510382;chr3:48510421-48510422		68.21	57.58	68.02	73.68	73.33	81.82	70.87	68.14	72.02	75.00	65.00	70.97	74.19	73.56	65.19	66.35	74.16	68.42	61.11	75.27	77.38	75.00	74.60	66.67	90.00	74.29	69.75	72.92	72.41	77.19	77.31	76.57	81.82	67.39	70.00	66.00	72.53	73.93	1.40	0.982910	1.000000
N	cassette	TM7SF3	chr12	-	chr12:27129291-27133498;chr12:27128592-27133498	chr12:27128592-27132716,chr12:27129291-27132716;chr12:27132870-27133498		chr12:27132717-27132869			75.00	92.68	84.38	NA	100.00	NA	97.87	88.24	86.11	91.67	95.35	91.67	98.95	100.00	91.67	97.06	100.00	100.00	NA	73.33	88.89	94.44	89.19	100.00	NA	100.00	78.12	90.00	96.97	100.00	80.00	90.00	86.67	93.18	95.74	92.16	95.28	84.12	-11.16	0.198395	0.709176
K	jcn_only_AA	CERS2	chr1	-	chr1:150940167-150940558	chr1:150940354-150940558					96.25	96.43	97.44	NA	93.33	NA	97.18	96.00	96.69	96.64	94.97	95.18	97.64	95.74	98.11	97.48	92.67	94.87	NA	96.34	100.00	96.43	97.09	93.94	100.00	94.44	97.32	93.02	94.74	96.30	97.37	98.04	NA	96.20	95.04	96.67	97.41	96.12	-1.28	0.098531	0.663989
K	intron_retention		chr2	-	chr2:219130670-219130786				chr2:219130669-219130670;chr2:219130786-219130787		0.00	0.00	9.76	0.00	2.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	2.56	2.17	3.23	3.70	11.11	0.00	0.00	5.88	0.00	4.55	0.00	9.09	8.96	0.00	6.06	0.00	2.94	0.00	0.00	0.00	0.488321	1.000000
N	cassette	OSTF1	chr9	+	chr9:77703643-77742488;chr9:77703643-77742484	chr9:77703643-77732419;chr9:77732467-77742488,chr9:77732467-77742484		chr9:77732420-77732466			93.06	100.00	97.06	100.00	100.00	NA	98.08	97.98	97.65	100.00	98.88	98.18	98.23	97.53	97.97	96.88	98.82	95.71	100.00	97.11	95.95	100.00	100.00	100.00	NA	95.88	100.00	100.00	100.00	96.10	95.96	100.00	100.00	98.89	100.00	100.00	100.00	96.53	-3.47	0.007664	0.267181
N	cassette	MED4	chr13	-	chr13:48655868-48660417	chr13:48655868-48657506;chr13:48657565-48660417		chr13:48657507-48657564			94.44	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	EPB41L3	chr18	-	chr18:5419925-5423376;chr18:5419877-5423376	chr18:5419931-5423376		chr18:5419877-5419924;chr18:5419925-5419930	chr18:5419876-5419877;chr18:5419924-5419925		92.52	100.00	95.58	100.00	90.00	NA	91.33	95.01	95.74	92.76	91.30	93.30	94.95	94.67	93.05	91.47	94.74	93.48	NA	94.91	100.00	93.24	96.38	95.04	100.00	95.49	95.03	92.19	93.83	95.92	93.33	94.22	NA	92.31	94.59	93.39	97.47	94.79	-2.69	0.369081	0.663989
K	alternative_acceptor	EMC4,MPI	chr15	+	chr15:34517402-34517764	chr15:34517402-34517736		chr15:34517737-34517764	chr15:34517764-34517765		92.31	100.00	100.00	NA	96.00	NA	91.38	100.00	91.30	91.84	91.94	100.00	92.16	88.46	100.00	100.00	91.43	100.00	100.00	100.00	100.00	81.82	89.13	80.00	NA	87.50	88.00	80.95	100.00	86.96	89.66	85.71	100.00	100.00	100.00	80.43	100.00	90.98	-9.02	0.256620	0.709013
K	intron_retention		chr14	-	chr14:74754590-74754909				chr14:74754589-74754590;chr14:74754909-74754910		6.25	11.76	7.50	0.00	6.25	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	4.35	0.00	0.00	10.00	14.29	2.44	10.00	10.34	0.00	12.50	7.50	6.25	0.00	3.12	0.00	14.71	12.77	8.33	3.33	12.90	3.45	9.16	6.88	-2.29	0.639360	1.000000
K	alternative_first_exon	DYNC1I2	chr2	+	chr2:172544677-172546656,chr2:172544514-172546656,chr2:172544869-172546656,chr2:172543969-172546656;chr2:172544138-172546656;chr2:172545159-172546656	chr2:172544384-172546656	chr2:172543919-172544137;chr2:172544981-172545158	chr2:172544182-172544383			72.22	76.92	55.17	NA	NA	84.62	65.28	55.22	53.12	52.08	54.39	50.98	70.83	57.38	52.11	44.23	55.93	58.70	84.62	52.94	71.43	75.00	83.33	61.54	83.87	45.83	50.00	65.00	79.17	66.67	60.00	54.55	95.45	70.00	73.08	63.33	80.40	56.30	-24.10	0.003140	0.027001
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48665472-48665866;chr3:48665621-48665866	chr3:48665738-48665866		chr3:48665472-48665620;chr3:48665621-48665737	chr3:48665471-48665472;chr3:48665620-48665621		12.50	0.00	12.68	NA	10.71	NA	0.00	NA	3.70	0.00	0.00	0.00	6.67	5.88	5.00	NA	0.00	NA	5.00	12.50	5.00	NA	9.09	NA	5.00	8.33	11.43	NA	4.55	NA	7.69	12.36	0.00	10.00	19.05	6.25	2.50	8.33	5.83	0.006139	0.405868
N	alternative_acceptor	GLTP	chr12	-	chr12:110289049-110293423;chr12:110290539-110293423	chr12:110290543-110293423		chr12:110289049-110290538;chr12:110290539-110290542	chr12:110289048-110289049;chr12:110290538-110290539		97.30	92.86	96.72	83.33	91.43	NA	95.56	100.00	91.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	84.38	96.43	84.38	93.75	98.11	100.00	NA	94.44	97.92	93.75	95.12	90.00	95.24	88.68	86.84	97.06	98.11	100.00	92.86	96.87	4.01	0.138646	0.635210
K	intron_retention		chr3	-	chr3:49843599-49845168				chr3:49843598-49843599;chr3:49845168-49845169		12.90	9.65	17.39	0.00	3.92	7.35	2.04	0.00	0.00	0.00	0.00	0.00	0.00	2.47	4.17	NA	0.00	0.00	3.39	6.17	3.45	NA	0.00	12.00	5.43	7.25	6.45	6.67	0.00	10.34	5.71	8.11	6.49	11.76	4.76	16.67	4.41	5.94	1.53	0.774596	1.000000
K	alternative_donor	EXOC3	chr5	+	chr5:462423-464404	chr5:462645-464404		chr5:462423-462644	chr5:462422-462423		7.50	2.44	8.11	0.00	3.85	NA	0.00	3.12	4.17	4.76	6.25	NA	2.13	0.00	4.35	0.00	0.00	7.69	5.41	6.67	3.45	14.29	4.84	0.00	0.00	9.76	2.27	0.00	2.17	5.88	9.68	11.76	6.45	2.70	5.17	15.38	2.29	7.08	4.80	0.112618	0.520337
K	jcn_only_AD	EIF1AD,UBE2L6	chr11	-	chr11:65767147-65767569	chr11:65767147-65767523		chr11:65767524-65767569	chr11:65767569-65767570		100.00	100.00	91.67	92.86	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	96.30	100.00	96.55	100.00	100.00	100.00	98.25	100.00	100.00	95.83	100.00	100.00	0.00	0.363217	0.657607
K	alternative_donor	NDUFB8	chr10	-	chr10:102289264-102289614	chr10:102289264-102289523		chr10:102289524-102289614	chr10:102289614-102289615		92.59	94.83	91.43	100.00	95.37	94.55	98.33	94.29	96.77	93.79	93.90	94.40	97.33	94.44	100.00	94.89	94.85	93.97	97.03	95.12	93.46	97.01	98.29	92.31	90.48	100.00	96.43	96.20	97.35	97.80	97.50	94.83	93.67	94.29	96.43	95.37	95.93	94.78	-1.15	0.818931	0.942369
K	intron_retention		chr6	-	chr6:43480939-43481096				chr6:43480938-43480939;chr6:43481096-43481097		4.30	0.00	6.50	0.00	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.58	6.52	5.88	5.56	5.26	11.11	3.33	5.10	4.17	5.66	2.78	7.25	7.14	8.33	5.26	6.12	6.10	0.00	3.81	3.81	0.955280	1.000000
N	cassette	SLCO2B1	chr11	+	chr11:74911433-74925508	chr11:74911433-74913945;chr11:74914011-74925508		chr11:74913946-74914010			100.00	92.59	100.00	75.00	100.00	84.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	80.65	100.00	NA	100.00	100.00	100.00	84.62	100.00	100.00	94.74	100.00	NA	NA	NA	97.06	100.00	91.89	100.00	94.83	100.00	5.17	0.074684	0.640086
K	intron_retention		chr6	+	chr6:42985085-42985256				chr6:42985084-42985085;chr6:42985256-42985257		0.00	0.00	3.12	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	NA	31.58	0.00	8.82	0.00	0.00	NA	0.00	8.33	0.00	0.00	4.55	7.69	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	MKNK2	chr19	-	chr19:2037829-2040132	chr19:2039856-2040132		chr19:2037829-2039855	chr19:2037828-2037829		44.35	14.50	52.60	7.14	8.70	7.14	75.00	84.44	85.53	75.00	76.92	71.43	74.60	90.91	81.82	71.43	80.00	NA	7.14	64.71	16.09	68.97	62.34	64.71	11.56	61.40	43.28	NA	30.95	NA	40.70	42.11	6.45	53.66	54.17	56.86	13.03	63.05	50.02	0.073790	0.663989
K	intron_retention		chr16	+	chr16:30677028-30677832				chr16:30677027-30677028;chr16:30677832-30677833		6.00	0.00	2.67	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.08	0.00	0.00	2.04	1.67	0.00	0.00	0.00	4.35	3.17	NA	4.26	0.00	0.00	0.00	1.02	1.02	0.490819	1.000000
N	alternative_acceptor	MAEA	chr4	+	chr4:1321492-1323664;chr4:1321492-1322421	chr4:1321492-1326544		chr4:1322422-1323664;chr4:1323665-1326544	chr4:1323664-1323665;chr4:1326544-1326545		93.33	90.91	94.20	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.72	100.00	96.67	100.00	98.85	100.00	NA	93.10	100.00	93.55	97.98	90.48	NA	91.67	92.86	92.86	98.21	100.00	92.86	95.59	100.00	90.38	95.28	86.00	99.36	93.22	-6.14	0.434363	0.744748
N	intron_retention		chr20	+	chr20:60883235-60883710				chr20:60883234-60883235;chr20:60883710-60883711		12.50	8.64	14.63	10.71	4.50	16.24	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	9.88	15.38	15.56	25.00	9.23	21.05	5.33	20.00	19.23	13.33	12.00	23.08	18.00	16.39	9.20	12.20	7.84	14.29	8.92	16.69	7.77	0.204435	1.000000
N	cassette	TMCO3	chr13	+	chr13:114188556-114202617;chr13:114193823-114202617	chr13:114188556-114201614,chr13:114193823-114201614;chr13:114201695-114202617		chr13:114201615-114201694			77.97	73.33	76.36	NA	83.33	NA	79.03	81.82	79.31	67.65	93.33	84.21	84.51	83.33	84.85	82.86	84.62	78.57	NA	86.96	72.22	76.19	81.13	78.95	NA	76.36	78.33	87.50	76.74	NA	82.50	81.36	82.35	90.62	85.00	82.50	80.69	82.16	1.47	0.583580	0.841014
K	intron_retention	RNF31,RP11-468E2.4	chr14	+	chr14:24629170-24629447				chr14:24629169-24629170;chr14:24629447-24629448		2.04	0.00	1.33	1.75	4.76	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	2.83	4.17	0.00	7.32	0.00	4.76	3.23	2.27	6.67	0.83	1.98	2.59	0.85	4.08	0.00	3.39	0.00	0.99	0.99	0.643437	1.000000
K	cassette	MED16	chr19	-	chr19:871254-873448	chr19:871254-871925;chr19:872119-873448		chr19:871926-872118			100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	96.00	NA	89.47	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.75	91.67	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.558391	0.823680
K	intron_retention		chr19	-	chr19:50166772-50167930				chr19:50166771-50166772;chr19:50167930-50167931		31.82	27.27	28.12	NA	15.38	NA	0.00	0.00	6.67	NA	0.00	NA	6.25	0.00	10.34	NA	10.00	NA	15.38	27.27	16.67	NA	28.57	NA	66.67	25.00	32.35	NA	22.22	NA	20.00	34.78	23.08	NA	35.29	20.00	19.23	22.50	3.27	0.890901	1.000000
K	intron_retention	NUP50	chr22	+	chr22:45579402-45580333				chr22:45579401-45579402;chr22:45580333-45580334		0.00	0.00	2.27	0.00	4.17	0.00	2.50	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	13.64	0.00	0.00	0.00	16.67	0.00	5.26	0.00	0.00	0.00	11.11	0.00	3.03	2.27	4.35	2.56	0.00	0.00	3.42	0.00	-3.42	0.348128	1.000000
K	intron_retention	ZNF335	chr20	-	chr20:44578208-44578438				chr20:44578207-44578208;chr20:44578438-44578439		0.00	11.36	2.78	0.00	7.32	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	5.71	3.70	0.00	0.00	2.22	5.00	0.00	0.00	0.00	2.38	0.00	0.00	3.23	5.41	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	HMG20B	chr19	+	chr19:3573799-3574380				chr19:3573798-3573799;chr19:3574380-3574381		19.35	17.24	18.75	14.29	12.50	NA	5.63	5.56	5.00	5.56	6.67	2.33	4.41	12.50	15.00	9.09	9.38	7.14	11.11	17.39	15.09	15.79	18.00	12.50	9.38	19.05	30.00	16.00	15.56	9.09	14.29	17.02	15.00	36.67	19.23	30.56	10.25	15.84	5.59	0.642836	1.000000
K	intron_retention		chr19	+	chr19:45572383-45572459				chr19:45572382-45572383;chr19:45572459-45572460		4.41	4.70	5.56	3.17	1.22	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.52	0.00	4.46	4.76	0.00	3.33	0.00	0.00	3.08	4.55	0.00	0.00	5.49	4.51	3.29	2.78	1.92	2.94	1.65	0.00	-1.65	0.936225	1.000000
N	alternative_acceptor	TNFRSF14	chr1	+	chr1:2489908-2491241;chr1:2489908-2491347;chr1:2489908-2491261;chr1:2489908-2490126	chr1:2489908-2490319		chr1:2490127-2490319;chr1:2490320-2491241;chr1:2491242-2491261;chr1:2491262-2491347	chr1:2490319-2490320;chr1:2491241-2491242;chr1:2491261-2491262;chr1:2491347-2491348		20.51	8.55	22.86	16.25	12.70	6.52	6.10	4.26	3.61	7.59	10.47	5.71	14.44	5.26	7.14	11.22	11.11	8.82	8.00	21.31	5.88	25.77	16.91	27.84	8.43	9.68	16.67	21.31	15.54	18.00	15.49	15.96	8.82	32.50	27.10	31.55	8.49	12.59	4.10	0.297278	0.709013
N	cassette	EHBP1L1	chr11	+	chr11:65348798-65351711;chr11:65348723-65351711;chr11:65348723-65351390;chr11:65349437-65351390;chr11:65349755-65351711;chr11:65349437-65351711	chr11:65349437-65351062,chr11:65349755-65351062,chr11:65348798-65351062,chr11:65348723-65351062;chr11:65351237-65351390,chr11:65351237-65351711		chr11:65351063-65351236			40.00	30.77	46.03	41.18	48.39	NA	41.67	40.16	40.79	59.46	58.33	92.86	54.05	41.83	46.07	71.88	67.47	73.33	40.62	27.62	40.62	56.25	40.00	31.58	72.73	28.23	32.89	51.72	39.29	51.35	30.77	28.47	36.84	44.44	36.92	47.50	41.14	35.38	-5.76	0.136820	0.709176
N	alternative_acceptor	PCSK7	chr11	-	chr11:117077073-117077396;chr11:117072636-117077396	chr11:117076227-117077396		chr11:117072636-117076226;chr11:117076227-117077072	chr11:117072635-117072636;chr11:117076226-117076227		5.26	20.00	0.00	NA	5.88	50.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	43.48	0.00	16.67	NA	0.00	NA	13.79	0.00	0.00	NA	0.00	0.00	0.00	0.00	9.09	8.33	0.00	0.00	11.44	0.00	-11.44	0.097465	0.598353
K	jcn_only_AA	LRRC75A-AS1	chr17	+	chr17:16342729-16343424;chr17:16342729-16342841;chr17:16342729-16343498;chr17:16342729-16342894	chr17:16342729-16342973					12.50	8.16	5.71	3.49	2.45	4.35	1.74	3.70	6.92	3.98	3.83	2.95	1.89	12.50	5.09	1.93	2.61	2.01	2.67	6.67	2.60	3.45	2.70	3.88	0.00	0.00	7.04	2.63	2.00	2.78	0.00	6.38	2.56	1.09	2.59	1.73	2.23	5.19	2.96	0.274419	0.663989
K	cassette	STXBP2	chr19	+	chr19:7712134-7712610	chr19:7712134-7712239;chr19:7712398-7712610		chr19:7712240-7712397			97.36	98.19	98.82	96.77	98.15	95.84	100.00	98.53	100.00	94.92	96.77	100.00	99.19	100.00	100.00	97.30	99.06	100.00	98.18	98.96	98.23	100.00	98.25	98.28	98.32	100.00	97.99	97.26	98.39	97.70	99.18	98.81	98.07	100.00	96.75	98.45	98.25	99.07	0.81	0.516477	0.794120
K	alternative_donor	NAP1L1	chr12	-	chr12:76441499-76442200	chr12:76441499-76442172		chr12:76442173-76442200	chr12:76442200-76442201		44.07	51.64	58.33	54.88	54.84	51.47	54.35	53.33	54.17	62.50	59.49	71.43	51.11	56.00	49.18	59.83	75.47	64.29	48.47	50.00	47.25	50.52	52.32	59.81	45.54	55.88	55.45	53.33	49.21	53.11	51.61	58.67	48.62	56.88	54.46	55.93	49.86	52.47	2.61	0.422292	0.685207
N	alternative_donor	FGD2	chr6	+	chr6:36993985-36995204;chr6:36994102-36995204;chr6:36995111-36995204	chr6:36993715-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		86.24	96.88	NA	NA	NA	NA	100.00	96.97	100.00	NA	100.00	84.62	98.31	94.51	98.11	92.31	100.00	88.46	100.00	88.89	NA	NA	100.00	87.10	NA	87.50	NA	84.00	100.00	86.67	90.38	92.86	100.00	93.75	95.24	85.42	100.00	89.63	-10.37	0.003397	0.141260
N	alternative_acceptor	TMEM126B	chr11	+	chr11:85346823-85347089	chr11:85346823-85347022		chr11:85347023-85347089	chr11:85347089-85347090		5.00	0.00	0.00	0.00	5.88	3.70	0.00	4.17	1.52	0.00	0.00	2.22	0.00	0.00	1.56	0.00	0.00	3.85	2.04	2.86	2.50	3.57	3.03	6.98	0.00	0.00	3.08	4.55	1.92	5.45	3.70	5.36	6.25	4.08	3.92	4.35	0.00	3.28	3.28	0.380986	0.709013
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12769325-12772073;chr19:12769328-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769322-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		1.69	0.00	1.79	NA	2.86	NA	1.92	1.16	0.70	2.45	2.66	2.14	1.65	1.67	1.83	3.23	2.64	1.20	7.14	2.22	6.67	5.17	4.96	4.08	2.22	1.47	1.05	1.39	3.64	5.00	2.78	5.00	6.25	2.35	3.81	2.99	2.07	1.68	-0.39	0.295668	0.709013
K	cassette	UTP6	chr17	-	chr17:30190536-30195064	chr17:30190536-30192384;chr17:30192458-30195064		chr17:30192385-30192457			100.00	100.00	94.29	90.91	98.21	100.00	100.00	100.00	100.00	94.87	98.00	96.55	100.00	100.00	100.00	95.12	96.23	100.00	96.83	92.11	100.00	97.22	100.00	96.77	100.00	100.00	100.00	94.12	100.00	100.00	92.59	100.00	100.00	100.00	98.21	92.11	100.00	100.00	0.00	0.278406	0.709176
N	jcn_only_AA	FGD2,TTK	chr6	+	chr6:36993715-36995208;chr6:36993715-36995204	chr6:36993715-36993866		chr6:36993867-36995204;chr6:36995205-36995208	chr6:36995204-36995205;chr6:36995208-36995209		12.15	0.00	NA	NA	NA	NA	0.00	7.25	5.56	NA	0.00	15.38	0.00	9.36	7.14	0.00	0.00	14.81	0.00	16.28	NA	NA	0.00	18.18	NA	14.50	NA	15.38	0.00	18.75	12.96	13.33	0.00	11.76	0.00	18.00	0.00	12.55	12.55	0.000294	0.109288
N	alternative_acceptor		chr11	+	chr11:822024-822498	chr11:822024-822396		chr11:822397-822498	chr11:822498-822499		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.94	100.00	100.00	0.00	0.783302	0.917646
K	alternative_first_exon	ADI1	chr2	-	chr2:3517748-3523532;chr2:3517748-3523138	chr2:3517748-3518578	chr2:3523139-3523507	chr2:3518579-3521518			4.17	0.00	3.66	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	5.26	1.61	0.00	0.00	0.00	0.00	3.08	0.00	2.08	2.94	1.43	0.00	2.08	2.08	0.077469	0.227014
N	alternative_acceptor	C20orf196	chr20	+	chr20:55092258-55102179	chr20:55092258-55093142		chr20:55093143-55102179	chr20:55102179-55102180		95.24	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	89.47	100.00	100.00	0.00	0.972953	0.993779
K	jcn_only_AD	PSMA1,RP11-140L24.4	chr11	-	chr11:14540588-14541842	chr11:14540588-14541450		chr11:14541451-14541842	chr11:14541842-14541843		7.69	0.00	12.22	NA	0.00	NA	6.03	12.38	14.17	5.43	3.42	6.98	5.00	11.11	13.91	6.43	5.19	6.54	NA	6.85	3.45	8.33	4.00	9.26	NA	18.84	12.00	3.70	3.70	3.70	21.43	18.06	14.29	11.67	10.59	12.16	5.52	11.75	6.23	0.124925	0.657607
K	intron_retention	P3H1	chr1	-	chr1:43213084-43213393				chr1:43213083-43213084;chr1:43213393-43213394		7.14	5.00	7.69	9.09	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.56	0.00	4.17	NA	12.90	NA	12.90	5.26	4.76	NA	9.68	0.00	4.55	5.56	6.78	0.00	3.57	9.09	3.78	2.27	-1.51	0.824791	1.000000
N	alternative_donor	MS4A6A	chr11	-	chr11:59940603-59942874;chr11:59940603-59942978	chr11:59940603-59943036		chr11:59942875-59942978;chr11:59942979-59943036	chr11:59942978-59942979;chr11:59943036-59943037		5.56	3.33	0.00	0.00	3.70	4.76	0.00	1.40	NA	0.76	0.54	0.00	0.91	0.00	NA	2.25	0.00	0.00	5.29	0.00	0.00	2.82	2.55	1.92	6.04	0.00	0.00	1.25	1.51	1.31	NA	0.00	9.04	0.00	2.06	0.00	4.31	0.00	-4.31	0.156664	0.563271
N	alternative_donor	CLN5	chr13	+	chr13:77574131-77574592;chr13:77572221-77574592	chr13:77570263-77574592		chr13:77570263-77572220;chr13:77572221-77574130	chr13:77570262-77570263;chr13:77572220-77572221		92.50	89.47	94.44	NA	94.74	91.67	98.11	97.96	97.56	100.00	98.55	100.00	97.83	95.35	95.74	96.77	96.88	96.55	92.31	93.48	96.97	91.67	97.22	90.48	NA	92.31	93.22	100.00	96.55	93.33	90.00	95.18	90.91	96.30	93.94	92.86	92.31	92.99	0.68	0.954161	0.984606
K	intron_retention	PIM3	chr22	+	chr22:50355460-50356336				chr22:50355459-50355460;chr22:50356336-50356337		13.20	6.06	10.71	7.89	2.27	4.65	5.88	15.38	12.73	3.80	4.12	6.48	4.44	20.33	14.72	6.26	3.30	4.87	0.00	14.43	11.81	6.48	5.77	7.78	16.67	20.31	10.62	9.60	9.52	10.65	15.02	9.81	18.52	10.88	9.35	9.29	5.97	15.20	9.23	0.999539	1.000000
K	alternative_last_exon	MRPL49	chr11	+	chr11:64892125-64894473	chr11:64892125-64892959	chr11:64894474-64894722	chr11:64892960-64893205			40.00	5.00	40.26	5.00	6.82	0.00	52.63	48.48	52.17	62.07	68.29	64.29	63.89	51.72	52.33	57.14	61.70	68.75	0.00	34.04	6.90	36.00	31.91	42.86	0.00	30.30	38.60	33.33	29.03	21.43	26.79	30.93	0.00	36.67	34.78	33.33	2.50	37.02	34.52	0.201827	0.431491
K	coord_cassette	PPA2	chr4	-	chr4:106292031-106367539	chr4:106292031-106307723;chr4:106307794-106317405;chr4:106317492-106320193;chr4:106320322-106345352;chr4:106345480-106367539		chr4:106307724-106307793;chr4:106317406-106317491;chr4:106320194-106320321;chr4:106345353-106345479			96.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.647127
N	alternative_acceptor	CACUL1	chr10	-	chr10:120433973-120450776	chr10:120446154-120450776		chr10:120433973-120446153	chr10:120433972-120433973		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.24	86.67	89.47	NA	94.44	NA	100.00	100.00	100.00	NA	100.00	NA	83.33	86.96	76.00	100.00	100.00	100.00	100.00	100.00	0.00	0.968222	0.991751
K	intron_retention	VPS33B	chr15	-	chr15:91542285-91542906				chr15:91542284-91542285;chr15:91542906-91542907		7.32	5.36	6.38	5.56	4.26	6.00	0.00	0.00	4.76	NA	10.00	NA	0.00	0.00	3.85	NA	0.00	0.00	3.51	11.11	6.38	15.38	7.89	9.52	3.39	6.67	6.12	0.00	3.57	4.17	6.52	7.25	4.35	6.90	5.26	12.24	3.45	6.59	3.14	0.825801	1.000000
N	jcn_only_AA	RGCC	chr13	+	chr13:42032607-42033179;chr13:42032607-42040958	chr13:42032607-42040964		chr13:42033180-42040958;chr13:42040959-42040964	chr13:42040958-42040959;chr13:42040964-42040965		0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	NA	1.21	0.57	0.00	0.00	0.00	NA	2.52	0.00	0.00	0.00	0.00	0.00	0.48	0.32	0.00	0.00	0.00	0.00	1.48	0.38	0.00	14.29	0.00	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA		chr12	+	chr12:121177000-121177107	chr12:121177000-121177098		chr12:121177099-121177107	chr12:121177107-121177108		100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	91.67	NA	100.00	NA	100.00	NA	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention	DUS1L	chr17	-	chr17:80016293-80016656				chr17:80016292-80016293;chr17:80016656-80016657		25.00	11.02	16.22	16.67	17.65	22.45	0.00	0.00	0.00	0.00	1.69	0.00	1.82	NA	5.13	2.38	2.13	0.00	12.37	4.17	13.16	22.22	17.65	21.05	15.71	NA	17.86	15.15	15.22	9.68	25.00	15.79	11.58	10.71	14.63	18.75	11.30	14.59	3.29	0.831341	1.000000
N	jcn_only_AA		chrX	+	chrX:67742760-67790825	chrX:67742760-67751722		chrX:67751723-67790825	chrX:67790825-67790826		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	cassette	LENG8	chr19	+	chr19:54963932-54965608	chr19:54963932-54964724;chr19:54964836-54965608		chr19:54964725-54964835			86.96	100.00	88.64	NA	NA	NA	100.00	100.00	92.31	73.33	89.29	NA	94.74	86.36	78.26	79.17	88.57	NA	NA	82.35	NA	NA	85.00	81.25	66.67	86.67	81.82	NA	90.91	NA	NA	88.89	NA	75.00	90.00	95.45	97.37	86.67	-10.70	0.836494	0.945387
N	alternative_acceptor	SNX8	chr7	-	chr7:2311600-2314746;chr7:2311607-2314746	chr7:2314005-2314746		chr7:2311600-2311606;chr7:2311607-2314004	chr7:2311599-2311600;chr7:2311606-2311607		0.00	0.00	0.00	4.17	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.32	0.00	0.00	NA	0.00	NA	2.70	2.78	4.35	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	2.50	2.56	0.00	0.00	0.00	0.373901	0.709013
N	cassette	RRAGD	chr6	-	chr6:90077927-90087389	chr6:90077927-90082155;chr6:90082305-90087389		chr6:90082156-90082304			94.29	100.00	100.00	100.00	97.30	100.00	100.00	93.55	100.00	96.63	100.00	94.12	95.12	100.00	100.00	95.38	100.00	100.00	94.92	93.10	94.20	100.00	94.03	95.00	93.65	94.12	100.00	100.00	97.40	93.44	85.29	92.00	92.31	96.81	94.64	100.00	95.02	93.84	-1.19	0.293594	0.709176
K	jcn_only_AD	PPP1R18	chr6	-	chr6:30647167-30654890	chr6:30647167-30652184		chr6:30652185-30654890	chr6:30654890-30654891		94.90	100.00	92.39	100.00	97.12	100.00	98.28	99.21	98.65	97.96	98.39	98.94	98.31	99.10	99.01	98.38	98.71	98.31	95.24	97.32	100.00	96.43	97.87	96.79	83.33	97.30	95.21	97.90	97.19	97.78	95.27	96.09	100.00	96.21	97.16	95.15	98.30	97.31	-0.98	0.643111	0.818639
K	alternative_last_exon	ME2,SERPINB8	chr18	+	chr18:61652480-61654092,chr18:61652480-61654196,chr18:61652480-61672052;chr18:61652480-61654107	chr18:61652480-61653491	chr18:61654108-61656608	chr18:61653492-61653887			3.70	2.63	6.94	3.28	2.90	4.41	1.43	0.00	1.59	1.90	1.56	1.64	0.00	1.39	1.59	1.59	1.99	4.35	2.08	5.08	2.78	2.78	2.80	3.57	0.00	2.78	4.55	5.88	0.97	2.00	7.27	7.27	2.44	3.57	3.16	4.55	1.75	3.24	1.49	0.140477	0.346075
K	jcn_only_AA	PQLC2	chr1	+	chr1:19653118-19654064	chr1:19653118-19653720		chr1:19653721-19654064	chr1:19654064-19654065		94.12	100.00	96.67	100.00	94.52	100.00	98.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	98.65	NA	100.00	85.71	100.00	90.00	89.06	100.00	100.00	100.00	97.14	92.31	91.84	100.00	94.74	100.00	100.00	96.77	90.20	87.50	100.00	97.37	-2.63	0.142386	0.663989
N	jcn_only_AD	ATAD1	chr10	-	chr10:89516680-89527429	chr10:89516680-89519457		chr10:89519458-89527429	chr10:89527429-89527430		0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	3.57	18.18	0.00	9.09	0.00	0.00	0.00	0.00	15.38	NA	0.00	NA	0.00	0.00	5.56	NA	NA	NA	NA	5.88	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.450284	0.706163
N	alternative_donor	SHISA5	chr3	-	chr3:48509617-48510759	chr3:48509617-48509721		chr3:48509722-48510759	chr3:48510759-48510760		97.00	100.00	100.00	100.00	84.51	79.49	100.00	96.43	96.69	100.00	100.00	100.00	100.00	95.88	100.00	95.51	100.00	100.00	100.00	93.85	100.00	100.00	100.00	100.00	100.00	98.71	94.62	94.74	93.85	93.85	100.00	100.00	82.93	100.00	100.00	97.06	100.00	96.72	-3.28	0.954651	0.984606
N	alternative_donor	CDYL	chr6	+	chr6:4952644-4954131;chr6:4952877-4954131	chr6:4952608-4954131		chr6:4952608-4952643;chr6:4952644-4952876	chr6:4952607-4952608;chr6:4952643-4952644		0.00	0.00	5.88	6.25	0.00	6.02	0.00	0.00	0.00	0.00	0.00	5.00	0.00	6.67	0.00	0.00	0.00	5.88	NA	0.00	5.00	0.00	0.00	10.53	NA	10.00	0.00	0.00	0.00	2.13	0.00	0.00	13.33	0.00	5.88	0.00	0.00	0.00	0.00	0.889768	0.977754
N	alternative_acceptor	XAB2	chr19	-	chr19:7689272-7690765	chr19:7689332-7690765		chr19:7689272-7689331	chr19:7689271-7689272		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	jcn_only_AA	MRPL28	chr16	-	chr16:419212-419930	chr16:419221-419930		chr16:419212-419220	chr16:419211-419212		96.55	100.00	95.12	97.62	95.35	94.34	96.00	95.77	96.67	98.53	100.00	100.00	95.74	100.00	96.72	100.00	98.94	100.00	91.94	98.31	96.81	100.00	96.61	96.88	100.00	94.67	95.12	97.06	95.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	97.43	-0.57	0.872233	0.951217
K	intron_retention		chr11	+	chr11:74914473-74915444				chr11:74914472-74914473;chr11:74915444-74915445		5.38	4.21	8.60	0.00	4.00	0.00	0.23	0.83	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	1.35	0.00	1.45	1.94	0.00	0.00	7.59	0.00	1.01	5.00	3.30	0.00	4.74	0.00	NA	3.45	2.08	2.17	4.85	0.00	1.23	1.94	0.71	0.957949	1.000000
K	alternative_last_exon	RBMX	chrX	-	chrX:135954505-135957244	chrX:135956612-135957244	chrX:135954427-135954504	chrX:135955620-135956611			96.43	100.00	90.16	100.00	100.00	100.00	98.08	100.00	94.37	99.17	98.60	100.00	100.00	100.00	97.26	98.33	98.63	100.00	100.00	92.00	100.00	95.00	97.26	97.87	100.00	93.33	95.52	98.51	98.08	100.00	81.25	86.27	100.00	97.83	96.92	98.25	100.00	94.88	-5.12	0.096272	0.315390
N	jcn_only_AA	MAN1B1	chr9	+	chr9:140002115-140002461;chr9:140002115-140002878;chr9:140002115-140002839	chr9:140002115-140002982		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		1.45	8.46	0.00	0.00	4.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	4.86	0.00	0.00	4.76	5.48	0.00	0.00	0.00	2.94	6.25	1.69	0.00	6.90	2.56	3.49	4.55	6.67	3.08	2.45	0.00	-2.45	0.370633	0.663989
K	intron_retention	RABL6	chr9	+	chr9:139730298-139731797				chr9:139730297-139730298;chr9:139731797-139731798		0.00	0.00	8.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	4.76	0.00	NA	1.85	NA	0.00	0.00	2.56	0.00	0.00	NA	0.00	4.17	7.41	0.00	0.00	4.55	0.00	0.00	0.00	0.652110	1.000000
N	jcn_only_AA	FUS	chr16	+	chr16:31193986-31195178;chr16:31193986-31199645	chr16:31193986-31195181					21.65	29.41	28.57	24.24	20.34	NA	26.19	34.19	22.50	27.17	29.38	30.41	29.52	26.32	24.39	28.34	30.00	25.62	NA	25.47	22.22	28.33	23.04	22.34	0.00	24.82	26.89	22.56	27.27	19.63	24.62	31.52	33.33	24.76	25.15	23.64	29.41	25.14	-4.27	0.709080	0.871871
K	cassette	ATG4B	chr2	+	chr2:242594063-242606059;chr2:242594759-242606059	chr2:242594759-242598522,chr2:242594063-242598522;chr2:242598603-242606059		chr2:242598523-242598602			100.00	100.00	97.96	100.00	96.97	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SDF4	chr1	-	chr1:1154308-1158623;chr1:1154324-1158623;chr1:1154303-1158623	chr1:1154386-1158623		chr1:1154303-1154307;chr1:1154308-1154323;chr1:1154324-1154385	chr1:1154302-1154303;chr1:1154307-1154308;chr1:1154323-1154324		1.89	1.24	1.94	2.63	1.72	4.44	0.81	1.35	0.88	0.00	1.25	0.00	0.93	0.00	1.04	0.62	2.30	1.61	0.97	1.53	1.35	2.48	1.86	2.86	3.23	1.04	1.56	5.05	1.69	3.06	2.43	2.02	2.74	1.68	3.08	2.42	1.10	1.44	0.33	0.619858	0.854460
N	jcn_only_AA	RP11-465B22.3	chr1	+	chr1:6648257-6648341	chr1:6648257-6648337		chr1:6648338-6648341	chr1:6648341-6648342		100.00	88.68	100.00	100.00	91.43	90.48	100.00	NA	NA	NA	93.75	NA	96.77	NA	100.00	100.00	95.00	NA	97.06	100.00	94.00	92.31	90.91	NA	96.20	100.00	91.67	100.00	92.50	NA	100.00	97.62	96.43	100.00	94.74	NA	96.60	100.00	3.40	0.043521	0.663989
K	alternative_acceptor	CAPN10,SEPT2	chr2	+	chr2:242289619-242291381	chr2:242289619-242291357		chr2:242291358-242291381	chr2:242291381-242291382		0.00	0.00	0.00	NA	0.00	0.00	1.49	2.41	1.15	1.72	1.14	0.83	1.23	2.47	2.27	0.72	1.38	0.00	9.09	2.70	0.00	0.00	3.51	0.00	NA	0.00	0.00	0.00	2.38	4.35	5.26	5.41	NA	3.23	1.85	0.00	1.36	2.44	1.08	0.733500	0.901372
N	jcn_only_AA	PORCN	chrX	+	chrX:47041266-47041375	chrX:47041266-47041349		chrX:47041350-47041375	chrX:47041375-47041376		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention	GRAMD1A	chr19	+	chr19:35512943-35514139				chr19:35512942-35512943;chr19:35514139-35514140		3.03	6.02	3.37	3.11	1.47	2.70	0.00	1.39	1.01	0.77	0.00	0.94	0.00	1.50	2.61	1.74	1.43	1.06	3.51	2.84	2.22	4.83	3.33	5.30	3.70	3.39	2.98	4.29	4.76	3.01	1.93	2.03	1.54	5.65	3.94	4.53	2.52	2.38	-0.14	0.977486	1.000000
N	alternative_acceptor	TCF25	chr16	+	chr16:89960267-89961490;chr16:89960267-89961445	chr16:89960267-89961424		chr16:89961425-89961445;chr16:89961446-89961490	chr16:89961445-89961446;chr16:89961490-89961491		6.45	7.69	9.09	20.00	7.41	NA	2.13	3.12	0.00	0.00	4.08	3.57	2.22	6.90	5.00	4.88	2.50	0.00	0.00	5.00	5.26	11.76	7.69	4.00	NA	6.90	6.98	14.81	14.81	15.38	8.00	7.50	0.00	11.43	8.11	12.96	2.13	6.68	4.55	0.059710	0.574109
N	alternative_acceptor	SART1	chr11	+	chr11:65729565-65731432;chr11:65729565-65731476	chr11:65729565-65731544		chr11:65731433-65731476;chr11:65731477-65731544	chr11:65731476-65731477;chr11:65731544-65731545		93.94	100.00	92.86	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.30	94.12	100.00	96.88	100.00	100.00	100.00	100.00	100.00	96.30	100.00	88.00	96.43	100.00	94.44	93.75	93.55	100.00	98.15	-1.85	0.123812	0.610671
N	cassette	NAGK	chr2	+	chr2:71300725-71303733	chr2:71300725-71302684;chr2:71302773-71303733		chr2:71302685-71302772			92.51	93.01	91.30	98.11	97.13	100.00	100.00	99.10	99.21	97.96	99.00	100.00	100.00	98.69	100.00	98.60	100.00	100.00	94.76	95.45	96.83	100.00	98.10	97.89	100.00	97.37	100.00	96.97	100.00	98.58	86.36	100.00	90.65	93.81	97.35	94.67	97.38	96.41	-0.97	0.579881	0.837494
K	alternative_donor	CNBP	chr3	-	chr3:128890382-128890476;chr3:128890382-128890494	chr3:128890382-128890497		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		70.42	82.76	74.51	66.67	76.09	NA	69.79	70.59	68.82	76.07	71.43	78.26	70.90	72.22	69.16	74.64	73.79	80.77	NA	79.12	69.05	77.00	73.55	74.68	NA	70.97	69.18	77.22	72.22	75.00	78.57	78.64	75.00	75.94	79.08	76.52	72.95	71.59	-1.36	0.786844	0.923123
K	jcn_only_AA	MBD6,MYL6B	chr12	+	chr12:56549377-56551251	chr12:56549377-56549701		chr12:56549702-56551251	chr12:56551251-56551252		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	TRIM28	chr19	+	chr19:59060144-59060252;chr19:59060144-59060228;chr19:59060144-59060231	chr19:59060144-59060206		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		8.70	5.88	8.89	9.09	7.14	NA	0.00	0.00	0.00	0.00	2.00	0.00	1.85	0.00	2.22	2.00	0.00	0.00	7.69	11.11	8.70	5.56	5.41	5.00	5.56	6.67	6.06	5.88	3.12	4.17	13.04	12.24	11.54	5.00	6.90	9.52	5.72	7.68	1.96	0.688362	0.881898
N	alternative_donor	AL928654.7,CRIP1	chr14	+	chr14:105953637-105954502	chr14:105954365-105954502		chr14:105953637-105954364	chr14:105953636-105953637		2.78	6.25	0.00	3.23	3.36	1.81	16.13	0.00	5.00	2.20	5.08	4.35	6.45	0.00	0.00	5.88	2.63	0.00	1.74	0.00	3.08	0.00	8.33	7.69	2.02	0.00	7.69	1.92	4.46	2.74	0.00	0.00	5.33	0.00	4.35	5.88	5.79	0.00	-5.79	0.039968	0.364826
K	jcn_only_AD	GADD45B	chr19	+	chr19:2476627-2477026	chr19:2476629-2477026		chr19:2476627-2476628	chr19:2476626-2476627		98.18	100.00	97.52	97.97	96.77	98.37	100.00	99.02	95.70	97.30	92.50	96.57	100.00	100.00	98.32	98.58	100.00	95.53	100.00	98.28	98.70	97.30	96.00	98.06	100.00	100.00	96.74	97.41	95.45	97.51	96.89	96.95	100.00	97.43	100.00	97.01	100.00	98.65	-1.35	0.048502	0.500386
N	jcn_only_AA	RHOT2	chr16	+	chr16:720774-720891;chr16:720774-720924	chr16:720774-720888		chr16:720889-720891;chr16:720892-720924	chr16:720891-720892;chr16:720924-720925		8.33	NA	10.00	NA	20.00	NA	3.45	0.00	8.70	9.09	6.90	20.00	7.69	4.55	7.69	4.76	3.33	0.00	14.29	0.00	0.00	16.67	2.78	5.88	0.00	12.00	16.67	20.00	10.34	9.09	10.00	10.71	NA	14.29	16.00	10.00	5.57	6.44	0.87	0.888759	0.960308
K	intron_retention	HSPD1	chr2	-	chr2:198352761-198353040				chr2:198352760-198352761;chr2:198353040-198353041		0.00	0.00	0.00	0.00	2.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	4.76	0.00	NA	0.00	0.00	0.00	0.00	NA	23.08	6.45	5.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	coord_cassette	NELFB	chr9	+	chr9:140160879-140166532	chr9:140160879-140161395;chr9:140161539-140161691;chr9:140161799-140166532		chr9:140161396-140161538;chr9:140161692-140161798			94.12	94.12	100.00	91.67	92.31	NA	100.00	92.59	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	93.94	100.00	100.00	90.48	100.00	100.00	100.00	100.00	90.24	100.00	100.00	100.00	97.06	100.00	2.94	0.542807	0.740610
K	intron_retention	ZYX	chr7	+	chr7:143079541-143079685				chr7:143079540-143079541;chr7:143079685-143079686		3.29	3.97	3.39	0.00	0.91	0.00	0.45	0.00	0.00	0.50	0.64	0.50	0.53	0.00	0.74	0.00	0.17	0.00	2.86	1.52	1.56	0.00	2.64	3.12	13.92	1.36	3.82	1.43	1.52	1.43	2.20	3.39	7.84	2.04	2.94	2.47	3.42	1.44	-1.98	0.353072	1.000000
N	cassette	CSK	chr15	+	chr15:75075062-75090573	chr15:75075062-75083157;chr15:75083288-75090573		chr15:75083158-75083287			0.00	0.00	1.30	NA	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
K	intron_retention	SRRT	chr7	+	chr7:100486005-100486094				chr7:100486004-100486005;chr7:100486094-100486095		10.84	11.20	8.64	9.03	9.69	9.95	0.00	3.45	5.71	2.78	7.14	0.00	5.08	5.13	2.08	5.08	4.08	0.00	9.52	7.25	11.46	9.68	8.47	12.77	8.65	4.55	10.34	3.92	9.28	7.46	14.40	11.19	12.50	7.58	4.82	8.82	9.09	6.19	-2.90	0.999928	1.000000
K	alternative_last_exon	MBD1	chr18	-	chr18:47796456-47799193	chr18:47799109-47799193	chr18:47795217-47796455	chr18:47799047-47799108			34.09	27.27	33.98	25.58	21.33	12.20	47.73	47.27	50.00	43.14	43.33	38.89	41.30	52.63	42.59	46.03	49.21	47.22	12.77	38.46	22.39	26.92	33.00	39.66	5.56	37.89	33.02	25.64	35.14	28.12	25.88	31.50	23.44	34.18	34.94	36.45	25.36	38.17	12.82	0.126839	0.340761
K	cassette	IDS	chrX	-	chrX:148582569-148584841	chrX:148582569-148583604;chrX:148583708-148584841		chrX:148583605-148583707			6.98	0.00	9.09	0.00	4.44	NA	5.48	15.79	10.23	8.11	8.97	5.41	6.76	11.86	13.58	9.76	8.49	11.11	0.00	9.76	0.00	5.26	6.98	4.76	0.00	14.81	6.90	12.50	8.51	10.00	10.26	5.06	3.70	8.11	6.90	5.13	1.85	11.06	9.21	0.000683	0.085458
K	cassette	ACAA1	chr3	-	chr3:38170880-38173416	chr3:38170880-38173086;chr3:38173130-38173416		chr3:38173087-38173129			77.36	87.30	76.00	71.43	78.72	NA	97.78	93.75	97.67	100.00	94.74	100.00	93.75	100.00	95.65	100.00	93.75	100.00	84.38	71.43	90.70	84.62	82.50	86.67	73.33	75.51	79.73	80.56	90.00	91.43	67.80	76.24	83.33	86.54	78.12	88.54	85.84	76.44	-9.41	0.394319	0.710703
K	intron_retention	HTRA2	chr2	+	chr2:74759053-74759745				chr2:74759052-74759053;chr2:74759745-74759746		0.00	5.56	0.00	0.00	5.41	5.26	5.26	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.69	NA	4.88	0.00	2.70	7.14	11.11	7.69	25.00	0.00	3.23	0.00	8.33	0.00	0.00	4.35	7.32	5.26	0.00	0.00	5.41	0.00	-5.41	0.173073	1.000000
K	intron_retention	DHX38	chr16	+	chr16:72138031-72138384				chr16:72138030-72138031;chr16:72138384-72138385		19.35	0.00	26.32	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	13.64	3.03	0.00	0.00	NA	16.00	NA	11.76	17.86	13.33	0.00	15.79	11.54	13.33	13.33	21.43	9.52	9.09	NA	17.24	25.00	14.63	0.00	12.65	12.65	0.177214	1.000000
K	alternative_acceptor	OAS1	chr12	+	chr12:113355506-113357291	chr12:113355506-113357193		chr12:113357194-113357291	chr12:113357291-113357292		96.06	100.00	100.00	90.91	100.00	92.25	63.16	70.07	75.00	66.67	NA	70.21	96.23	97.10	96.90	96.43	87.50	91.26	100.00	96.89	70.00	100.00	100.00	94.44	100.00	95.86	92.00	95.90	100.00	94.62	75.00	77.97	80.00	87.50	NA	76.09	98.12	95.96	-2.16	0.865126	0.954648
K	alternative_first_exon	HDGF	chr1	-	chr1:156715166-156717226,chr1:156715166-156718080,chr1:156715166-156719655,chr1:156715166-156720181,chr1:156715166-156721040,chr1:156715166-156737130;chr1:156715166-156725328;chr1:156715166-156721134	chr1:156715166-156722020,chr1:156715166-156721829	chr1:156725329-156725456;chr1:156721135-156721536	chr1:156722021-156722025			4.00	0.00	3.00	NA	10.53	NA	3.70	7.69	1.41	2.33	2.13	4.35	3.23	11.11	1.54	0.00	8.93	0.00	NA	0.00	0.00	4.35	2.17	15.00	0.00	4.55	7.25	10.00	0.00	21.43	6.25	11.11	NA	16.13	5.77	13.16	1.61	5.40	3.79	0.068304	0.209623
N	cassette	ADAP1,COX19	chr7	-	chr7:939128-940169	chr7:939128-939738;chr7:939802-940169		chr7:939739-939801			100.00	100.00	100.00	100.00	96.55	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.987739	0.997001
K	intron_retention	RNF40	chr16	+	chr16:30785507-30785634				chr16:30785506-30785507;chr16:30785634-30785635		93.48	100.00	100.00	NA	100.00	NA	100.00	95.65	100.00	100.00	100.00	90.00	96.67	100.00	100.00	100.00	100.00	NA	94.74	84.85	93.10	100.00	92.31	92.86	100.00	100.00	91.84	93.75	90.32	93.33	94.74	91.67	100.00	100.00	93.33	100.00	100.00	95.19	-4.81	0.322063	1.000000
K	jcn_only_AA	HMG20B	chr19	+	chr19:3573799-3574380;chr19:3573799-3574338;chr19:3573799-3573900	chr19:3573799-3574367		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		7.41	0.00	3.70	7.69	0.00	NA	1.47	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	5.88	6.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	4.88	0.00	9.52	0.00	0.00	0.00	1.35	1.35	0.417242	0.689626
N	jcn_only_AA		chr19	+	chr19:46025840-46025978;chr19:46025840-46025949	chr19:46025840-46025975		chr19:46025950-46025975;chr19:46025976-46025978	chr19:46025975-46025976;chr19:46025978-46025979		97.43	95.83	96.10	98.39	97.48	100.00	93.90	98.73	95.83	95.73	95.65	95.20	98.00	97.35	100.00	94.21	96.02	97.25	100.00	96.07	97.32	96.50	98.54	97.67	100.00	97.40	97.83	98.45	96.12	98.44	96.70	96.75	97.30	98.18	99.00	97.59	97.65	97.38	-0.28	0.835584	0.935389
N	cassette	ZBTB8OS	chr1	-	chr1:33099674-33116002;chr1:33099674-33116033;chr1:33099674-33102842;chr1:33099674-33116029;chr1:33099712-33116033;chr1:33099712-33102842;chr1:33099712-33116002	chr1:33099674-33100302,chr1:33099712-33100302;chr1:33100394-33102842,chr1:33100394-33116002,chr1:33100394-33116033,chr1:33100394-33116029		chr1:33100303-33100393			58.82	81.48	70.83	81.82	79.31	92.31	83.33	66.67	83.33	78.57	87.50	72.73	86.36	92.31	89.29	79.17	77.50	94.12	70.83	80.00	76.47	75.00	85.19	66.67	70.59	84.62	59.26	78.57	71.43	73.68	80.00	76.00	66.67	100.00	93.33	58.33	76.16	80.00	3.84	0.932038	0.982804
K	jcn_only_AD	USF1	chr1	-	chr1:161012673-161013057	chr1:161012673-161013042		chr1:161013043-161013057	chr1:161013057-161013058		0.00	0.00	0.75	NA	8.11	NA	0.00	0.00	0.00	4.44	1.06	2.78	0.00	0.94	0.00	1.69	0.00	0.00	9.09	2.50	0.00	0.00	2.70	0.00	0.00	0.00	0.73	1.28	0.00	2.04	4.55	1.30	0.00	2.78	2.17	1.16	0.00	0.47	0.47	0.916695	0.958435
K	intron_retention		chr1	+	chr1:241755452-241756665				chr1:241755451-241755452;chr1:241756665-241756666		100.00	100.00	100.00	94.63	95.50	94.16	100.00	100.00	100.00	95.83	95.24	94.74	100.00	100.00	100.00	93.94	94.74	95.08	83.78	83.33	91.84	93.56	95.74	93.43	100.00	100.00	100.00	94.62	93.22	94.31	93.15	93.02	95.00	96.63	96.82	94.88	100.00	100.00	0.00	0.877550	1.000000
K	alternative_donor	S100A12,USF1	chr1	-	chr1:161012008-161012375	chr1:161012008-161012344		chr1:161012345-161012375	chr1:161012375-161012376		40.74	48.72	44.44	NA	53.12	NA	48.89	43.14	48.33	56.00	46.94	45.00	50.88	46.88	46.03	48.15	47.37	50.00	58.33	50.91	34.48	54.55	50.00	46.67	26.09	52.38	51.28	65.71	47.22	53.12	42.59	41.22	50.00	50.00	53.85	42.31	49.45	45.01	-4.43	0.836081	0.953361
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75651780-75651960;chr15:75651708-75651960	chr15:75651767-75651960		chr15:75651708-75651766;chr15:75651767-75651779	chr15:75651707-75651708;chr15:75651766-75651767		80.00	88.89	100.00	91.67	88.00	NA	100.00	NA	93.75	100.00	93.02	100.00	100.00	100.00	100.00	100.00	97.50	100.00	NA	100.00	100.00	87.50	100.00	90.48	72.22	NA	100.00	100.00	95.00	93.75	90.00	100.00	NA	100.00	92.59	93.02	94.44	95.00	0.56	0.794423	0.910039
K	intron_retention	ATG4D	chr19	+	chr19:10663001-10663560				chr19:10663000-10663001;chr19:10663560-10663561		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.26	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	CSNK1D	chr17	-	chr17:80207479-80209254				chr17:80207478-80207479;chr17:80209254-80209255		7.69	7.32	11.97	4.88	2.67	8.33	0.00	0.85	0.92	0.00	0.00	1.22	0.75	0.65	0.00	0.69	0.00	0.00	11.54	7.59	5.45	3.57	4.39	3.90	0.00	3.96	4.44	6.06	3.75	8.57	6.19	5.47	5.00	3.03	4.40	5.71	2.88	5.08	2.20	0.899011	1.000000
K	intron_retention		chr19	-	chr19:49954106-49954741				chr19:49954105-49954106;chr19:49954741-49954742		5.56	0.00	4.76	0.00	0.00	0.00	0.00	0.00	2.17	0.00	3.23	4.00	0.00	4.35	5.00	0.00	2.22	0.00	2.63	3.57	4.00	0.00	3.12	13.33	0.00	4.55	6.82	0.00	6.45	0.00	9.38	10.29	0.00	0.00	10.34	8.82	0.00	4.45	4.45	0.367563	1.000000
K	jcn_only_AD	SLC2A4RG	chr20	+	chr20:62373718-62374051	chr20:62373969-62374051		chr20:62373718-62373968	chr20:62373717-62373718		92.86	NA	NA	NA	100.00	NA	100.00	94.44	100.00	100.00	100.00	NA	100.00	94.74	100.00	NA	95.83	NA	NA	NA	NA	NA	93.75	NA	100.00	90.91	NA	NA	100.00	NA	NA	NA	100.00	NA	NA	NA	100.00	93.65	-6.35	0.004558	0.177805
N	jcn_only_AD	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007595;chr22:51007511-51007604;chr22:51007511-51007764	chr22:51007511-51007641		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		0.00	12.77	0.00	NA	0.00	6.67	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16.67	11.76	6.82	NA	NA	NA	14.71	15.15	17.86	NA	NA	NA	11.11	8.00	5.71	NA	NA	NA	13.74	11.43	-2.31	0.496485	0.739002
K	cassette	DEGS1	chr1	+	chr1:224378022-224380033	chr1:224378022-224378793;chr1:224378859-224380033		chr1:224378794-224378858			1.89	0.00	2.90	3.45	3.28	0.00	3.41	3.88	5.21	1.70	3.19	2.88	2.62	3.30	4.55	2.39	1.90	3.65	7.69	2.99	3.92	2.17	2.87	5.15	NA	5.56	1.71	3.30	3.15	7.46	3.23	1.75	0.00	3.01	3.80	3.82	2.62	3.26	0.64	0.646285	0.869972
K	intron_retention	SUGP2	chr19	-	chr19:19105296-19105952				chr19:19105295-19105296;chr19:19105952-19105953		40.00	54.55	69.57	26.67	40.62	53.85	14.29	7.14	7.14	NA	10.53	NA	25.00	0.00	40.00	18.18	17.65	NA	38.46	26.67	31.82	58.33	51.61	NA	56.67	NA	64.29	44.44	42.11	27.27	40.00	52.17	57.14	73.68	83.33	64.00	46.50	26.67	-19.83	0.498072	1.000000
N	cassette	IWS1	chr2	-	chr2:128247520-128250856	chr2:128247520-128249546;chr2:128249665-128250856		chr2:128249547-128249664			88.46	100.00	84.21	85.71	100.00	75.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	88.00	96.30	100.00	100.00	100.00	100.00	100.00	93.75	93.10	100.00	100.00	100.00	85.19	85.71	91.67	100.00	92.50	100.00	100.00	0.00	0.834094	0.944391
K	jcn_only_AA	UBE2H	chr7	-	chr7:129479116-129497350	chr7:129479176-129497350		chr7:129479116-129479175	chr7:129479115-129479116		95.24	100.00	92.31	100.00	NA	100.00	97.62	100.00	95.12	97.42	94.55	95.21	96.77	97.44	100.00	97.95	100.00	97.97	NA	95.45	90.00	97.92	100.00	92.65	100.00	93.75	96.55	100.00	93.75	98.00	86.96	90.91	NA	96.61	100.00	92.68	98.81	95.34	-3.47	0.098318	0.663989
K	intron_retention	RABL6	chr9	+	chr9:139726823-139730193				chr9:139726822-139726823;chr9:139730193-139730194		4.00	0.00	1.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	2.27	9.09	12.82	0.00	2.44	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.33	11.54	0.00	0.00	0.00	0.794192	1.000000
K	coord_cassette	PPA2	chr4	-	chr4:106292031-106367539	chr4:106292031-106307723;chr4:106307794-106317405;chr4:106317492-106320193;chr4:106320322-106367539		chr4:106307724-106307793;chr4:106317406-106317491;chr4:106320194-106320321			94.74	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.647127
K	intron_retention	ILF3	chr19	+	chr19:10799355-10799854				chr19:10799354-10799355;chr19:10799854-10799855		13.33	0.00	5.13	0.00	3.23	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	2.22	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.75	10.26	9.09	4.76	0.00	0.00	0.00	2.78	2.78	0.657241	1.000000
K	cassette	IL10RA	chr11	+	chr11:117859218-117863955	chr11:117859218-117860156;chr11:117860336-117863955		chr11:117860157-117860335			97.35	100.00	99.06	NA	100.00	NA	97.98	98.89	98.45	95.54	97.24	98.58	98.91	99.07	98.66	96.96	97.25	98.34	NA	97.58	100.00	97.30	100.00	97.90	88.00	97.67	99.30	98.67	100.00	100.00	100.00	97.42	100.00	96.80	95.18	97.63	98.91	98.28	-0.63	0.563463	0.824881
K	jcn_only_AA	SERPINF1	chr17	+	chr17:1675370-1678356	chr17:1675370-1678351		chr17:1678352-1678356	chr17:1678356-1678357		100.00	100.00	94.12	100.00	94.00	100.00	95.83	NA	91.67	100.00	96.00	100.00	96.43	NA	100.00	83.33	91.30	100.00	89.66	100.00	90.32	92.86	91.18	100.00	100.00	100.00	87.10	100.00	90.24	95.65	100.00	88.89	88.00	95.00	95.08	96.36	96.13	100.00	3.87	0.061163	0.663989
N	cassette	UNC45A	chr15	+	chr15:91492674-91493383	chr15:91492674-91492883;chr15:91492951-91493383		chr15:91492884-91492950			85.19	100.00	91.30	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.00	89.66	NA	100.00	100.00	100.00	100.00	97.06	84.62	100.00	100.00	83.87	79.41	90.48	100.00	100.00	100.00	100.00	98.00	-2.00	0.263263	0.709176
N	alternative_donor		chr12	-	chr12:57642587-57642827;chr12:57642587-57642797	chr12:57642587-57642823		chr12:57642798-57642823;chr12:57642824-57642827	chr12:57642823-57642824;chr12:57642827-57642828		94.34	96.30	92.31	NA	100.00	NA	100.00	97.58	97.62	100.00	100.00	100.00	100.00	96.77	94.59	100.00	100.00	100.00	95.83	92.50	96.77	NA	100.00	NA	NA	94.38	93.33	100.00	97.14	100.00	97.56	96.15	94.12	90.00	95.24	100.00	96.30	95.57	-0.73	0.270765	0.645499
N	alternative_acceptor	PPIF	chr10	+	chr10:81112149-81113400;chr10:81112149-81113366	chr10:81112149-81113462		chr10:81113367-81113400;chr10:81113401-81113462	chr10:81113400-81113401;chr10:81113462-81113463		92.71	100.00	95.32	96.79	95.99	98.04	98.08	98.01	96.91	96.91	97.26	96.57	97.58	96.36	97.47	97.65	96.97	96.29	96.49	93.50	95.28	97.27	97.09	96.55	100.00	97.20	96.55	97.71	97.03	97.51	90.16	94.26	93.26	95.99	96.39	96.36	97.83	94.93	-2.90	0.101666	0.598353
K	cassette	EIF6	chr20	-	chr20:33867922-33871978	chr20:33867922-33868456;chr20:33868633-33871978		chr20:33868457-33868632			94.25	92.31	91.49	88.30	90.14	94.85	91.58	95.92	93.40	91.91	89.29	93.46	94.39	95.92	93.97	88.61	92.56	95.29	92.13	92.77	95.48	93.88	91.27	94.51	93.33	95.28	94.79	97.00	93.46	98.02	92.63	91.35	86.02	90.57	88.54	95.28	92.22	94.77	2.55	0.069824	0.624766
K	intron_retention		chr11	-	chr11:62444478-62444989				chr11:62444477-62444478;chr11:62444989-62444990		3.52	2.09	4.07	3.10	2.51	2.65	0.80	1.37	0.00	0.00	0.00	0.00	0.74	0.00	1.85	0.00	0.00	0.00	2.69	4.72	3.11	5.56	4.38	8.70	2.26	3.74	6.63	4.44	4.08	2.78	6.64	6.14	3.60	8.33	4.38	6.29	2.17	3.63	1.46	0.589683	1.000000
N	alternative_acceptor	MALAT1	chr11	+	chr11:65272491-65273856	chr11:65272491-65272657		chr11:65272658-65273856	chr11:65273856-65273857		100.00	100.00	99.50	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	97.20	100.00	100.00	100.00	97.73	100.00	96.43	100.00	98.21	100.00	100.00	100.00	99.00	100.00	97.33	100.00	100.00	93.22	97.22	98.06	100.00	100.00	100.00	100.00	0.00	0.380212	0.709013
K	intron_retention	SIPA1	chr11	+	chr11:65417523-65417608				chr11:65417522-65417523;chr11:65417608-65417609		5.19	4.18	6.37	3.12	4.39	3.08	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.72	2.13	0.00	0.00	0.00	2.69	4.04	3.23	7.14	5.26	7.14	1.56	4.76	4.84	3.23	7.14	3.77	8.70	6.72	4.85	4.35	3.57	6.25	2.12	4.40	2.28	0.532020	1.000000
N	jcn_only_AA	C18orf21	chr18	+	chr18:33552871-33554858;chr18:33552871-33554902	chr18:33552871-33553554		chr18:33553555-33554858;chr18:33554859-33554902	chr18:33554858-33554859;chr18:33554902-33554903		0.00	0.00	0.00	NA	NA	NA	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	CPNE1	chr20	-	chr20:34214723-34215201;chr20:34214749-34215201;chr20:34214726-34215201	chr20:34214775-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		4.65	6.71	4.76	8.33	6.10	6.00	2.13	0.00	0.00	4.55	0.00	0.00	2.50	5.26	4.88	3.70	6.25	0.00	10.17	10.00	10.00	12.90	13.56	10.34	6.45	4.00	9.52	14.81	12.24	12.00	7.14	12.86	10.61	13.89	11.43	12.12	6.58	4.96	-1.62	0.546741	0.823069
K	alternative_acceptor	DNAJC4	chr11	+	chr11:63999437-63999901;chr11:63999437-63999981	chr11:63999437-63999865		chr11:63999866-63999901;chr11:63999902-63999981	chr11:63999901-63999902;chr11:63999981-63999982		3.85	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	3.33	0.00	0.00	6.25	0.00	0.00	2.63	0.00	0.00	6.25	2.70	0.00	2.70	0.00	0.00	0.00	2.50	0.00	3.23	0.00	0.00	3.85	3.85	0.112689	0.605363
N	alternative_acceptor	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837350		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		15.32	20.31	8.87	7.14	16.00	27.27	10.98	11.35	13.57	8.14	7.83	7.50	12.20	10.17	10.08	6.76	7.14	12.16	15.79	10.09	11.24	13.51	13.25	5.88	6.25	11.19	10.09	14.58	8.14	11.11	15.65	15.00	21.95	12.50	10.39	10.26	13.99	11.27	-2.72	0.415855	0.730345
N	jcn_only_AA	GMPR2	chr14	+	chr14:24706769-24707832;chr14:24706769-24707457;chr14:24706769-24707794	chr14:24706769-24707451		chr14:24707452-24707457;chr14:24707458-24707794;chr14:24707795-24707832	chr14:24707457-24707458;chr14:24707794-24707795;chr14:24707832-24707833		96.97	100.00	97.14	NA	92.31	NA	100.00	98.08	100.00	100.00	100.00	100.00	98.90	98.08	100.00	95.45	95.65	95.45	87.50	96.15	96.88	NA	94.12	100.00	100.00	100.00	98.15	100.00	97.62	100.00	94.74	95.00	95.00	100.00	91.89	91.67	99.45	97.53	-1.92	0.846871	0.938257
N	alternative_acceptor	VAC14	chr16	-	chr16:70721992-70726723;chr16:70725953-70726723;chr16:70721988-70726723;chr16:70725990-70726723	chr16:70721994-70726723		chr16:70721988-70721991;chr16:70721992-70721993;chr16:70721994-70725952;chr16:70725953-70725989	chr16:70721987-70721988;chr16:70721991-70721992;chr16:70721993-70721994;chr16:70725952-70725953		73.81	83.91	71.43	87.23	84.27	84.91	72.09	60.00	80.00	71.15	71.43	75.00	73.81	73.91	71.43	64.71	66.67	73.68	86.79	70.27	88.24	67.57	64.20	64.52	84.62	71.05	78.38	72.88	71.05	74.42	79.17	77.27	88.00	64.29	70.97	62.22	84.27	72.43	-11.83	0.023850	0.546324
K	cassette	SLAMF8	chr1	+	chr1:159796729-159802665	chr1:159796729-159799655;chr1:159799983-159802665		chr1:159799656-159799982			96.15	100.00	95.77	NA	NA	NA	96.38	98.69	100.00	100.00	95.21	100.00	96.09	97.76	100.00	96.15	96.45	91.67	100.00	96.15	87.50	81.82	94.83	NA	NA	100.00	96.55	100.00	92.86	NA	NA	100.00	NA	100.00	90.70	100.00	98.19	97.76	-0.43	0.790528	0.936947
K	intron_retention	HDAC10,MAPK12	chr22	-	chr22:50687884-50688063				chr22:50687883-50687884;chr22:50688063-50688064		0.00	16.67	9.09	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	7.14	NA	0.00	0.00	0.00	0.00	3.85	0.00	5.56	NA	9.09	13.33	0.00	0.00	5.56	5.88	0.00	0.00	0.00	1.000000	1.000000
K	alternative_donor	BCL3	chr19	+	chr19:45261671-45261980	chr19:45261731-45261980		chr19:45261671-45261730	chr19:45261670-45261671		3.52	2.08	2.46	1.31	1.37	1.99	0.00	1.52	0.80	0.73	0.00	0.40	0.00	1.73	1.55	1.81	1.78	1.06	0.00	3.77	2.30	4.31	2.82	1.97	6.25	2.20	2.01	3.28	1.85	2.35	1.43	2.00	9.09	3.66	4.55	2.21	1.04	1.97	0.93	0.753096	0.899031
K	intron_retention	SPG11	chr15	-	chr15:44855500-44856744				chr15:44855499-44855500;chr15:44856744-44856745		0.00	0.00	4.92	NA	4.17	NA	4.17	0.00	0.00	NA	NA	NA	9.09	7.14	2.56	NA	8.33	NA	4.00	0.00	3.23	8.33	10.34	NA	NA	0.00	0.00	NA	6.67	0.00	0.00	4.76	0.00	14.29	4.17	4.76	4.00	0.00	-4.00	0.616788	1.000000
K	alternative_acceptor	C17orf62	chr17	-	chr17:80403833-80404498;chr17:80403757-80404498	chr17:80403837-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		94.81	96.88	92.77	NA	82.35	NA	97.50	93.15	92.39	91.67	92.31	88.24	87.76	94.92	90.72	100.00	95.83	100.00	91.67	88.00	92.59	NA	82.14	81.25	90.91	94.00	90.79	78.57	86.36	83.33	80.77	89.29	81.25	84.62	91.67	90.48	91.29	93.58	2.29	0.987673	0.995150
K	intron_retention	WDFY2	chr13	+	chr13:52325552-52329493				chr13:52325551-52325552;chr13:52329493-52329494		11.76	37.50	7.69	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	8.00	3.12	0.00	NA	0.00	NA	NA	4.35	9.09	NA	NA	NA	0.00	11.43	7.14	NA	NA	NA	0.00	12.50	NA	NA	NA	NA	4.00	3.73	-0.27	0.740029	1.000000
K	intron_retention		chr22	-	chr22:50967768-50967924				chr22:50967767-50967768;chr22:50967924-50967925		10.46	10.08	22.46	6.82	9.32	4.53	0.84	1.69	2.05	1.27	0.95	1.17	1.02	2.48	4.64	2.84	1.48	1.05	4.33	9.22	2.99	18.36	16.46	19.27	13.21	7.86	12.43	7.64	6.67	6.47	7.04	13.99	3.54	20.87	15.86	18.74	3.94	7.45	3.52	0.930065	1.000000
K	cassette	EMG1,RP3-461F17.3	chr12	+	chr12:7084311-7084857	chr12:7084311-7084390;chr12:7084541-7084857		chr12:7084391-7084540			85.71	91.49	88.24	94.00	85.00	95.83	100.00	90.00	100.00	96.88	100.00	93.33	93.94	90.00	100.00	96.72	96.00	NA	97.78	100.00	93.94	90.91	86.84	91.30	80.00	NA	100.00	100.00	94.12	92.50	NA	92.86	92.00	95.83	89.66	88.00	92.97	90.00	-2.97	0.797513	0.936947
K	intron_retention		chr3	+	chr3:49211837-49212174				chr3:49211836-49211837;chr3:49212174-49212175		11.76	14.29	NA	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	4.00	NA	NA	6.67	NA	NA	NA	NA	0.00	2.27	NA	NA	NA	NA	4.00	NA	NA	NA	0.00	NA	0.00	3.13	3.13	0.749047	1.000000
K	intron_retention		chr2	+	chr2:220073772-220073983				chr2:220073771-220073772;chr2:220073983-220073984		25.86	26.00	34.04	23.81	25.97	16.67	5.88	0.00	0.00	0.00	4.17	NA	7.32	7.14	11.11	7.69	0.00	NA	22.64	15.38	16.18	31.25	22.00	10.00	25.12	20.69	30.77	18.75	26.32	13.33	31.43	28.89	22.54	25.00	24.44	26.09	22.59	18.04	-4.55	0.995019	1.000000
N	cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28986879-28990475;chr16:28986879-28990580	chr16:28986879-28989228;chr16:28989366-28990580,chr16:28989366-28990475		chr16:28989229-28989365		chr16:28986813-28986878;chr16:28990581-28990627	100.00	100.00	93.33	93.33	94.87	NA	100.00	100.00	95.35	98.95	98.06	100.00	100.00	100.00	97.96	98.11	98.96	100.00	94.74	100.00	100.00	96.23	96.97	97.50	100.00	100.00	97.30	100.00	98.55	95.83	100.00	93.33	91.30	97.33	97.47	100.00	100.00	100.00	0.00	0.190520	0.709176
K	intron_retention	AD000671.6	chr19	-	chr19:36232130-36233296				chr19:36232129-36232130;chr19:36233296-36233297		28.00	11.22	20.51	4.55	14.29	6.06	5.26	6.25	6.06	0.00	6.12	0.00	6.67	6.67	15.00	0.00	9.80	4.17	7.76	11.11	12.90	5.26	10.85	2.13	16.33	7.14	20.31	11.90	12.04	8.93	4.88	8.93	5.41	11.11	14.75	2.56	7.21	6.90	-0.31	0.925848	1.000000
N	alternative_acceptor		chr20	+	chr20:61436383-61438033;chr20:61436383-61438893	chr20:61436383-61438888		chr20:61438034-61438888;chr20:61438889-61438893	chr20:61438888-61438889;chr20:61438893-61438894		88.51	95.83	93.48	90.91	100.00	NA	100.00	95.90	93.44	92.31	94.29	90.59	89.74	91.61	87.50	89.66	93.62	93.33	83.33	89.89	94.74	84.38	93.75	81.33	82.14	86.84	94.29	85.92	96.97	89.43	91.76	92.65	100.00	80.00	96.55	84.87	92.78	90.75	-2.03	0.766125	0.913895
K	intron_retention	STK11	chr19	+	chr19:1221340-1221947				chr19:1221339-1221340;chr19:1221947-1221948		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.13	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.50	0.00	0.00	NA	0.00	7.14	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AD	MBD4	chr3	-	chr3:129150422-129151940;chr3:129150422-129151398	chr3:129150422-129151345					81.67	71.60	71.43	100.00	81.03	75.00	93.94	92.31	100.00	100.00	90.00	NA	90.24	93.75	100.00	88.89	94.81	NA	68.12	77.55	80.23	100.00	88.37	NA	76.32	90.24	80.00	93.33	92.86	89.47	64.52	67.86	76.06	72.73	83.54	84.62	76.19	85.95	9.77	0.539403	0.759102
K	cassette	HNRNPC	chr14	-	chr14:21702389-21737456	chr14:21702389-21731469;chr14:21731496-21737456		chr14:21731470-21731495			38.94	52.63	35.99	72.22	66.67	75.00	85.98	61.19	52.59	88.96	84.06	83.56	84.39	62.42	51.88	87.01	81.68	81.78	68.75	32.84	42.39	71.53	70.20	68.60	NA	32.54	39.93	87.27	79.87	79.03	21.58	27.02	54.84	63.41	62.61	55.50	68.75	35.89	-32.86	0.020030	0.388475
K	alternative_last_exon	THOC2	chrX	-	chrX:122736123-122744768;chrX:122735190-122744768	chrX:122737600-122744768	chrX:122734413-122735189	chrX:122735731-122737599			51.72	26.67	54.76	23.53	32.43	21.43	70.00	75.00	63.16	80.00	71.43	70.00	61.11	60.00	54.55	60.00	57.89	70.00	23.68	60.87	26.67	50.00	50.00	54.17	18.75	54.55	44.44	38.89	42.86	30.77	44.44	51.72	22.86	50.00	47.37	55.56	25.18	57.27	32.10	0.079127	0.281549
K	jcn_only_AD	SMIM19	chr8	+	chr8:42396849-42401611;chr8:42397299-42401611	chr8:42397517-42401611		chr8:42396849-42397298;chr8:42397299-42397516	chr8:42396848-42396849;chr8:42397298-42397299		25.00	57.14	37.50	40.00	36.11	NA	42.86	20.00	19.05	28.57	34.29	12.50	30.00	NA	27.78	NA	38.46	10.00	50.00	24.00	35.00	10.00	31.43	15.38	18.75	40.00	31.71	NA	39.13	NA	41.18	38.71	31.25	38.89	38.71	21.05	37.05	25.00	-12.05	0.284917	0.657607
N	coord_cassette	CDK4	chr12	-	chr12:58142401-58144438	chr12:58142401-58142964;chr12:58143101-58143236;chr12:58143288-58144438		chr12:58142965-58143100;chr12:58143237-58143287			100.00	100.00	100.00	100.00	100.00	100.00	98.77	NA	100.00	98.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	98.15	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AA	AC138969.4,STUB1	chr16	+	chr16:731881-732058	chr16:731881-732019		chr16:732020-732058	chr16:732058-732059		100.00	94.88	98.33	95.24	99.18	96.84	98.92	100.00	100.00	100.00	97.33	100.00	100.00	100.00	100.00	97.37	98.84	100.00	97.77	93.33	98.45	94.74	96.36	100.00	97.30	100.00	97.18	100.00	98.80	97.83	96.43	96.43	97.01	100.00	98.65	95.24	97.53	100.00	2.47	0.645508	0.842032
K	cassette	SNRPN	chr15	+	chr15:25207357-25213078	chr15:25207357-25212175;chr15:25212300-25213078		chr15:25212176-25212299			0.00	2.86	2.63	NA	5.56	NA	0.91	0.00	1.52	4.35	1.87	5.97	0.00	NA	0.00	3.77	2.38	2.13	0.00	0.00	0.00	5.56	1.82	4.35	0.00	0.00	3.12	2.70	4.55	0.00	0.00	2.27	0.00	7.50	0.00	2.63	0.00	0.00	0.00	0.239224	0.709176
K	intron_retention	ADCY7	chr16	+	chr16:50339761-50340960				chr16:50339760-50339761;chr16:50340960-50340961		2.56	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.03	0.00	0.00	0.00	1.47	0.00	0.00	2.94	NA	NA	6.67	0.00	0.00	3.57	NA	NA	4.17	0.00	NA	NA	0.00	0.00	3.57	2.86	0.00	2.56	2.56	0.898932	1.000000
K	intron_retention	CCDC130	chr19	+	chr19:13870087-13873112				chr19:13870086-13870087;chr19:13873112-13873113		4.55	0.00	11.11	7.69	8.00	6.67	6.25	0.00	0.00	0.00	0.00	NA	7.14	0.00	0.00	0.00	7.69	NA	7.14	6.45	7.69	6.67	12.00	0.00	0.00	4.35	14.71	0.00	0.00	0.00	7.50	7.84	7.14	0.00	9.09	5.00	6.70	4.45	-2.25	0.827969	1.000000
K	alternative_last_exon	TMPRSS13	chr11	-	chr11:117774172-117774369,chr11:117772665-117774369;chr11:117772981-117774369	chr11:117774167-117774369	chr11:117771358-117772980	chr11:117773757-117774166			0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	1.49	NA	NA	NA	1.33	2.94	5.26	5.88	NA	NA	3.85	0.00	0.00	0.00	0.664019	0.789185
K	intron_retention		chr2	-	chr2:220246307-220246700				chr2:220246306-220246307;chr2:220246700-220246701		0.00	2.99	3.33	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00	0.00	0.00	0.00	0.00	4.76	6.38	7.41	0.00	5.00	3.33	3.08	5.13	0.00	6.38	6.98	5.41	2.33	0.00	6.90	0.00	0.00	0.00	0.565984	1.000000
K	alternative_donor	SSNA1	chr9	+	chr9:140083604-140084258	chr9:140083718-140084258		chr9:140083604-140083717	chr9:140083603-140083604		94.74	96.83	96.61	94.44	94.06	96.08	98.92	97.67	97.22	96.55	94.32	96.67	95.24	95.92	96.51	94.74	94.85	100.00	95.93	97.92	95.37	93.48	94.85	96.67	100.00	97.22	95.24	98.18	93.55	94.12	95.00	95.12	92.42	93.75	96.10	96.30	96.38	96.57	0.19	0.910171	0.981916
K	jcn_only_AD	TMED4	chr7	-	chr7:44619228-44621047	chr7:44619228-44620691					100.00	100.00	98.80	100.00	100.00	100.00	100.00	97.67	96.83	96.97	100.00	96.83	100.00	95.83	100.00	94.12	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	97.37	100.00	94.44	95.52	100.00	97.73	96.00	96.77	100.00	97.65	-2.35	0.045134	0.497155
N	jcn_only_AD	TAOK3	chr12	-	chr12:118588964-118590031	chr12:118588964-118589731		chr12:118589732-118590031	chr12:118590031-118590032		0.00	0.00	5.32	0.00	0.00	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.72	3.03	0.00	1.69	0.00	0.00	3.08	0.00	0.00	0.00	5.19	0.00	0.00	0.00	5.56	0.00	0.00	2.83	4.31	8.16	0.00	0.00	0.00	0.242979	0.657607
K	intron_retention	PPM1M	chr3	+	chr3:52282470-52282652				chr3:52282469-52282470;chr3:52282652-52282653		12.00	0.00	25.58	NA	11.11	NA	2.25	2.78	0.00	0.00	0.00	0.00	1.32	0.00	4.35	0.00	9.62	NA	15.38	20.00	0.00	NA	21.67	NA	26.67	5.88	20.59	0.00	10.96	NA	NA	21.21	11.76	16.67	13.73	NA	7.00	5.88	-1.12	0.982510	1.000000
N	jcn_only_AA	MAVS	chr20	+	chr20:44576078-44576214	chr20:44576078-44576162		chr20:44576163-44576214	chr20:44576214-44576215		100.00	89.77	100.00	100.00	96.61	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	89.66	100.00	94.74	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	96.34	94.19	97.30	95.65	100.00	97.09	100.00	2.91	0.217245	0.663989
N	alternative_acceptor	SLC26A11	chr17	+	chr17:78225201-78226428;chr17:78225201-78226423	chr17:78225201-78226132		chr17:78226133-78226423;chr17:78226424-78226428	chr17:78226423-78226424;chr17:78226428-78226429		6.06	8.11	5.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	5.88	9.09	0.00	4.35	0.00	7.14	4.35	0.00	0.00	2.33	0.00	9.68	6.25	0.00	5.77	2.86	1.92	0.00	5.97	5.97	0.079987	0.585944
K	jcn_only_AD	ARHGAP4,RBM41	chrX	-	chrX:153187263-153192043;chrX:153187263-153193780;chrX:153187263-153192269	chrX:153187263-153191589		chrX:153191590-153192043;chrX:153192044-153192269;chrX:153192270-153193780	chrX:153192043-153192044;chrX:153192269-153192270;chrX:153193780-153193781		94.74	100.00	90.62	NA	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	97.64	89.47	100.00	100.00	100.00	96.30	100.00	100.00	NA	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	94.74	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.262156	0.657607
K	intron_retention		chr3	-	chr3:129152091-129152692				chr3:129152090-129152091;chr3:129152692-129152693		5.15	0.00	4.86	0.00	0.00	NA	2.17	0.00	0.00	0.00	0.00	NA	1.54	0.00	0.00	0.00	0.00	NA	0.00	2.41	0.00	0.00	3.70	NA	0.00	2.78	5.56	0.00	0.88	0.00	0.00	2.20	2.44	8.33	4.24	8.00	0.77	1.21	0.44	0.362729	1.000000
K	jcn_only_AD	CHD4	chr12	-	chr12:6688084-6690209	chr12:6688084-6690203		chr12:6690204-6690209	chr12:6690209-6690210		2.50	4.30	5.34	11.76	4.17	0.00	2.04	4.65	6.06	8.49	5.74	7.50	2.22	5.17	5.75	5.00	1.96	5.41	5.41	9.23	7.81	8.33	6.82	5.45	0.00	10.98	8.33	8.57	7.78	7.32	10.53	8.99	12.90	10.77	4.00	5.83	3.26	7.20	3.94	0.278439	0.657607
K	cassette	BTBD2	chr19	-	chr19:1990822-1993018	chr19:1990822-1991875;chr19:1992056-1993018		chr19:1991876-1992055			0.00	0.00	0.00	NA	NA	NA	0.00	6.67	0.00	NA	4.55	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.373901	0.709176
N	cassette	PCNP	chr3	+	chr3:101293124-101309058;chr3:101293124-101304280	chr3:101293124-101298685;chr3:101298849-101304280,chr3:101298849-101309058		chr3:101298686-101298848			70.27	65.38	86.15	NA	64.71	66.67	82.35	85.19	87.95	83.08	85.33	78.57	82.72	86.54	82.76	76.47	82.95	84.78	71.43	86.11	94.74	71.43	72.50	76.92	NA	90.48	83.93	86.96	80.00	80.95	62.07	78.26	64.29	86.05	81.03	79.66	71.43	85.65	14.22	0.287550	0.709176
K	jcn_only_AD	ATP6AP1	chrX	+	chrX:153657521-153660175;chrX:153657750-153660175	chrX:153660004-153660175		chrX:153657521-153657749;chrX:153657750-153660003	chrX:153657520-153657521;chrX:153657749-153657750		1.06	0.00	1.45	13.33	0.00	NA	0.94	1.22	0.95	2.44	0.84	0.98	1.27	2.40	0.84	1.84	0.95	0.41	5.56	4.49	0.00	4.17	2.37	2.03	0.00	1.45	1.03	1.56	4.10	0.00	0.00	2.09	0.00	2.83	2.74	2.42	0.47	1.33	0.86	0.671250	0.831179
N	jcn_only_AA	HEXB	chr5	+	chr5:74014189-74014584;chr5:74014189-74014733	chr5:74014189-74014621		chr5:74014585-74014621;chr5:74014622-74014733	chr5:74014621-74014622;chr5:74014733-74014734		96.90	100.00	96.75	96.05	96.95	97.34	100.00	97.16	100.00	98.37	100.00	100.00	98.03	100.00	97.83	97.02	98.33	98.51	93.17	93.14	94.90	97.23	96.83	100.00	100.00	98.23	97.18	96.76	100.00	100.00	93.80	94.50	93.57	96.65	96.95	97.89	99.02	97.03	-1.98	0.601375	0.814737
K	intron_retention		chr2	-	chr2:230636349-230638812				chr2:230636348-230636349;chr2:230638812-230638813		2.95	0.00	3.50	1.85	0.00	0.00	0.00	0.70	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	3.23	2.65	5.05	1.87	1.13	1.83	0.00	2.45	1.73	2.63	0.75	1.07	2.59	3.49	5.26	4.29	1.27	2.41	0.00	2.52	2.52	0.843946	1.000000
K	coord_cassette	EMP3	chr19	+	chr19:48828868-48832608	chr19:48828868-48830086;chr19:48830180-48830777;chr19:48830819-48832608		chr19:48830087-48830179;chr19:48830778-48830818			98.29	95.58	99.46	98.78	98.09	97.02	99.60	99.64	100.00	99.54	99.05	99.24	99.16	100.00	100.00	99.71	99.24	99.67	96.41	98.87	98.04	98.75	99.45	99.28	92.86	98.11	96.85	99.13	99.43	98.88	98.47	95.68	91.80	98.77	98.65	98.94	96.00	98.67	2.67	0.069773	0.643829
K	intron_retention	RBM3	chrX	+	chrX:48434056-48434701				chrX:48434055-48434056;chrX:48434701-48434702		6.60	6.02	8.25	4.08	3.30	7.69	1.84	5.13	6.10	0.92	0.89	0.29	2.24	2.11	5.16	1.80	0.69	0.49	0.00	7.21	9.09	7.62	7.17	7.08	0.00	13.43	12.15	5.82	6.08	7.05	12.24	15.12	0.00	6.69	7.28	5.45	0.92	6.90	5.98	0.066226	1.000000
K	intron_retention	ARRB2	chr17	+	chr17:4621319-4621906				chr17:4621318-4621319;chr17:4621906-4621907		31.00	27.72	29.66	0.00	15.12	NA	40.00	NA	NA	7.14	20.00	NA	61.54	NA	54.55	NA	29.41	NA	16.67	22.22	37.50	3.70	17.00	7.14	33.33	32.50	32.93	42.11	36.36	21.43	18.64	22.03	17.31	19.05	16.04	6.15	30.52	26.61	-3.91	0.862913	1.000000
N	cassette	SEC63	chr6	-	chr6:108194117-108202352	chr6:108194117-108197767;chr6:108197867-108202352		chr6:108197768-108197866			90.91	100.00	95.65	NA	100.00	NA	100.00	88.24	93.75	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.43	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	95.74	100.00	100.00	0.00	0.179035	0.709176
K	alternative_acceptor	DDX3X	chrX	+	chrX:41206705-41207112	chrX:41206705-41206892		chrX:41206893-41207112	chrX:41207112-41207113		96.98	100.00	97.11	100.00	100.00	90.11	100.00	97.06	100.00	96.46	93.21	97.73	96.19	98.20	96.97	97.84	100.00	97.64	100.00	94.76	91.78	100.00	100.00	100.00	100.00	95.07	97.35	100.00	100.00	89.47	92.91	93.71	100.00	94.76	100.00	94.75	100.00	96.03	-3.97	0.006241	0.405868
K	intron_retention	NDUFV1	chr11	+	chr11:67378042-67378465				chr11:67378041-67378042;chr11:67378465-67378466		10.26	13.45	13.11	8.77	4.90	3.95	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	7.89	0.00	0.00	0.00	8.11	16.67	5.61	8.16	7.69	6.98	12.77	21.43	15.52	6.38	6.35	2.82	12.20	16.67	8.39	5.77	7.23	5.88	8.25	11.23	2.98	0.780703	1.000000
K	cassette	SDF2	chr17	-	chr17:26976295-26982304	chr17:26976295-26978503;chr17:26978596-26982304		chr17:26978504-26978595			1.83	0.00	2.24	2.04	2.94	5.88	6.38	6.94	4.55	4.35	2.08	8.82	4.84	2.67	5.56	7.94	6.00	11.54	2.74	1.82	0.98	4.26	3.57	2.70	0.00	1.77	3.33	5.36	2.99	5.36	1.02	1.27	0.00	4.44	3.26	1.37	1.37	1.83	0.46	0.814271	0.937502
N	alternative_donor		chr20	-	chr20:32385802-32399868	chr20:32385802-32398845		chr20:32398846-32399868	chr20:32399868-32399869		94.44	91.67	91.67	95.12	100.00	80.43	100.00	100.00	95.83	99.12	100.00	100.00	100.00	100.00	98.57	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	89.47	92.19	100.00	100.00	100.00	96.67	100.00	100.00	0.00	0.584500	0.799662
N	alternative_acceptor	SRRM2	chr16	+	chr16:2819286-2820361;chr16:2819286-2819628;chr16:2819286-2819862	chr16:2819286-2820352		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		68.91	71.21	64.14	56.31	68.59	58.90	82.22	75.00	87.27	85.71	83.33	72.73	75.00	82.05	72.97	72.22	80.30	75.00	77.27	73.26	70.94	65.17	72.19	48.94	70.37	58.11	64.79	54.55	61.34	50.45	64.76	64.48	77.12	56.35	61.21	48.15	76.06	71.09	-4.97	0.217848	0.671511
N	alternative_acceptor	FAM219B	chr15	-	chr15:75194405-75194944;chr15:75192941-75194944	chr15:75192479-75194944		chr15:75192479-75192940;chr15:75192941-75194404	chr15:75192478-75192479;chr15:75192940-75192941		0.00	7.32	0.00	0.00	12.24	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	5.56	0.00	0.00	0.00	2.08	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	2.44	0.00	5.71	6.25	1.22	0.00	-1.22	0.108397	0.600043
K	intron_retention	PLXND1	chr3	-	chr3:129285475-129286334				chr3:129285474-129285475;chr3:129286334-129286335		7.06	14.96	8.42	NA	3.70	NA	0.47	2.75	3.46	0.78	0.68	0.70	0.89	6.49	3.77	1.37	1.08	1.74	11.76	7.50	6.52	4.44	8.05	6.49	19.15	10.00	7.01	6.82	6.78	0.00	0.00	8.96	13.79	1.10	8.38	1.79	12.77	6.78	-6.00	0.535677	1.000000
K	intron_retention	GLMP	chr1	-	chr1:156264808-156265316				chr1:156264807-156264808;chr1:156265316-156265317		6.06	0.00	14.29	NA	0.00	NA	0.55	0.00	0.00	0.00	0.66	0.00	0.71	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.77	0.00	0.00	6.98	0.00	3.57	3.23	0.00	6.45	8.70	NA	3.12	7.50	2.17	0.28	3.03	2.75	0.294063	1.000000
K	intron_retention		chr19	-	chr19:8617049-8618022				chr19:8617048-8617049;chr19:8618022-8618023		0.66	2.20	1.63	NA	4.35	NA	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	9.09	0.97	4.00	0.00	2.20	0.00	4.00	0.00	1.45	0.00	0.00	NA	2.38	3.30	7.14	0.00	1.74	3.17	3.10	0.33	-2.77	0.480868	1.000000
K	intron_retention	MGAT1	chr5	-	chr5:180220098-180235647				chr5:180220097-180220098;chr5:180235647-180235648		13.16	0.00	14.81	NA	15.38	NA	4.65	7.59	6.35	25.71	11.43	20.93	6.06	7.27	7.69	9.38	7.14	18.18	NA	16.22	10.00	10.00	3.92	10.94	33.33	9.89	6.90	10.00	6.12	22.22	18.87	14.93	NA	10.10	14.00	15.50	5.36	11.53	6.17	0.969250	1.000000
K	alternative_acceptor	CYB561A3	chr11	-	chr11:61117116-61118462	chr11:61117895-61118462		chr11:61117116-61117894	chr11:61117115-61117116		100.00	100.00	97.57	96.59	95.81	100.00	98.90	98.03	98.43	96.88	98.05	100.00	98.70	98.70	97.88	98.44	97.98	100.00	95.71	97.63	96.47	97.27	98.06	97.47	91.49	98.21	96.71	97.79	98.10	96.67	97.50	98.58	100.00	98.27	97.22	97.23	98.80	98.12	-0.68	0.556481	0.826636
K	alternative_donor	YBX3	chr12	-	chr12:10854734-10855010;chr12:10854734-10856658;chr12:10854734-10856649	chr12:10854734-10854857		chr12:10854858-10855010;chr12:10855011-10856649;chr12:10856650-10856658	chr12:10855010-10855011;chr12:10856649-10856650;chr12:10856658-10856659		5.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	1.52	NA	0.00	1.32	0.00	0.00	0.00	0.00	1.43	0.00	1.96	0.00	1.18	0.00	0.00	0.00	0.363217	0.650093
K	jcn_only_AD	AHSA1	chr14	+	chr14:77924326-77925958	chr14:77924613-77925958		chr14:77924326-77924612	chr14:77924325-77924326		100.00	100.00	100.00	100.00	100.00	NA	100.00	98.98	98.78	100.00	100.00	100.00	100.00	100.00	97.98	100.00	100.00	98.48	100.00	100.00	100.00	100.00	98.77	95.00	NA	100.00	98.41	100.00	100.00	94.64	100.00	96.55	100.00	100.00	98.36	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AA	AFG3L2	chr18	-	chr18:12344247-12348271	chr18:12345450-12348271		chr18:12344247-12345449	chr18:12344246-12344247		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	jcn_only_AA	METTL5	chr2	-	chr2:170669017-170671986	chr2:170669035-170671986		chr2:170669017-170669034	chr2:170669016-170669017		11.11	4.49	0.00	4.76	1.56	5.41	0.00	0.00	0.00	0.00	1.89	0.00	8.33	NA	5.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	2.04	NA	8.70	0.00	0.00	6.67	0.00	5.88	NA	6.25	1.61	0.00	0.00	0.00	3.05	0.00	-3.05	0.751027	0.887739
K	intron_retention		chr1	+	chr1:180145169-180147928				chr1:180145168-180145169;chr1:180147928-180147929		0.80	4.44	2.08	0.00	0.00	NA	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.81	0.32	0.00	1.90	0.00	4.55	0.77	0.00	0.00	3.45	1.16	10.71	0.82	1.20	0.00	0.00	0.00	0.99	1.32	8.57	2.50	5.21	0.46	4.50	0.81	-3.69	0.362860	1.000000
N	alternative_acceptor	MIIP	chr1	+	chr1:12089339-12089821;chr1:12089339-12089790	chr1:12089339-12089897		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		0.00	10.71	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.13	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	HDAC7	chr12	-	chr12:48178001-48179169				chr12:48178000-48178001;chr12:48179169-48179170		7.32	22.22	16.67	NA	NA	NA	4.76	4.55	6.06	0.00	13.33	NA	0.00	0.00	8.57	NA	0.00	NA	NA	11.11	18.75	NA	25.00	NA	18.75	18.52	17.54	16.67	30.77	15.15	10.00	9.52	27.27	18.75	25.00	29.17	18.75	8.66	-10.09	0.579167	1.000000
K	intron_retention	NPEPL1,STX16-NPEPL1	chr20	+	chr20:57287636-57288475				chr20:57287635-57287636;chr20:57288475-57288476		18.92	10.91	22.86	7.69	10.53	0.00	2.56	0.00	3.70	0.00	0.00	0.00	3.03	0.00	9.09	0.00	0.00	0.00	2.38	12.50	2.78	NA	9.68	NA	5.17	17.24	19.51	11.11	8.82	6.25	21.05	21.74	2.13	8.00	14.29	13.79	2.79	14.87	12.07	0.299241	1.000000
K	intron_retention	NMRK1	chr9	-	chr9:77684019-77684657				chr9:77684018-77684019;chr9:77684657-77684658		0.00	0.00	3.45	NA	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	4.35	3.33	2.50	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.25	7.14	2.78	1.72	2.27	2.90	5.56	0.00	6.25	2.86	0.00	1.11	1.11	0.704216	1.000000
N	jcn_only_AD		chr9	-	chr9:132590532-132591514	chr9:132590532-132591483		chr9:132591484-132591514	chr9:132591514-132591515		100.00	100.00	100.00	92.00	95.12	100.00	100.00	96.00	100.00	96.49	95.89	95.24	100.00	100.00	100.00	96.36	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177701	0.657607
N	jcn_only_AA	MAN1B1	chr9	+	chr9:140002115-140002982;chr9:140002115-140002461;chr9:140002115-140002878	chr9:140002115-140002839		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		92.75	91.54	100.00	91.30	92.92	97.44	97.14	100.00	100.00	100.00	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	86.81	100.00	93.33	95.24	91.78	100.00	100.00	100.00	97.06	93.75	98.31	96.55	84.21	97.44	89.53	95.45	91.67	93.75	94.34	100.00	5.66	0.534557	0.773371
K	intron_retention	NUMA1	chr11	-	chr11:71717310-71718234				chr11:71717309-71717310;chr11:71718234-71718235		11.86	13.33	13.89	NA	17.14	NA	6.78	2.38	10.00	4.08	12.90	0.00	4.55	3.03	12.16	0.00	3.51	0.00	28.57	10.26	4.00	5.88	18.39	4.05	0.00	3.92	9.09	10.00	14.93	12.50	5.56	9.59	5.88	9.62	13.04	7.61	6.33	4.74	-1.59	0.716489	1.000000
K	cassette	SH3BP2	chr4	+	chr4:2824765-2826339	chr4:2824765-2825121;chr4:2825297-2826339		chr4:2825122-2825296			0.00	0.00	1.89	NA	0.00	NA	6.58	3.57	4.00	4.40	5.38	4.88	3.53	2.17	2.70	5.15	2.61	2.17	NA	3.23	0.00	3.33	2.38	0.00	3.45	2.94	0.00	2.27	2.63	2.94	0.00	0.00	NA	0.00	0.00	5.36	3.49	2.55	-0.94	0.395747	0.711787
K	jcn_only_AA	FBXL19,HERPUD1	chr16	+	chr16:56976150-56977176	chr16:56976150-56977037		chr16:56977038-56977176	chr16:56977176-56977177		100.00	86.11	100.00	100.00	96.00	100.00	88.61	96.36	100.00	92.98	97.81	95.44	91.97	100.00	100.00	100.00	94.96	100.00	100.00	96.00	95.24	95.06	93.46	96.67	86.36	100.00	88.76	94.55	100.00	93.75	100.00	97.02	100.00	92.65	91.54	91.90	90.29	100.00	9.71	0.054402	0.663989
N	alternative_acceptor	GLTP	chr12	-	chr12:110289049-110293423;chr12:110290543-110293423	chr12:110290539-110293423		chr12:110289049-110290538;chr12:110290539-110290542	chr12:110289048-110289049;chr12:110290538-110290539		2.70	7.14	3.28	16.67	8.57	NA	4.44	0.00	8.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	15.62	3.57	15.62	6.25	1.89	0.00	NA	5.56	2.08	6.25	2.44	10.00	4.76	11.32	13.16	2.94	1.89	0.00	7.14	3.13	-4.00	0.138646	0.635210
N	cassette	MRPS18C	chr4	+	chr4:84378112-84382125;chr4:84378112-84382145;chr4:84379583-84382125	chr4:84378112-84380892,chr4:84379583-84380892;chr4:84380951-84382125,chr4:84380951-84382145		chr4:84380893-84380950			94.29	76.47	94.37	86.36	93.98	90.20	100.00	98.89	100.00	100.00	98.68	97.22	98.59	98.59	100.00	98.11	100.00	100.00	88.89	90.79	95.88	90.62	90.77	90.32	90.32	100.00	98.48	90.91	96.30	100.00	90.48	94.67	86.42	93.33	92.42	92.54	89.60	96.44	6.84	0.209781	0.709176
N	alternative_last_exon		chr21	+	chr21:30702015-30783841;chr21:30702015-30733872;chr21:30702015-30723954	chr21:30702015-30714719	chr21:30733873-30734215;chr21:30723955-30724134	chr21:30714720-30718469			99.34	84.62	94.93	95.83	100.00	97.64	100.00	99.09	98.80	99.60	98.21	99.61	100.00	98.41	97.52	99.20	100.00	99.12	NA	99.22	95.24	98.53	100.00	98.80	83.33	98.88	98.13	99.12	100.00	98.71	100.00	98.61	NA	97.28	98.78	97.87	92.31	99.16	6.84	0.219541	0.441897
N	cassette	HCK	chr20	+	chr20:30667681-30674430	chr20:30667681-30671696;chr20:30671847-30674430		chr20:30671697-30671846			98.62	100.00	100.00	96.88	100.00	100.00	100.00	99.48	100.00	98.55	98.44	100.00	100.00	99.53	100.00	98.39	100.00	98.83	100.00	98.97	100.00	97.14	96.04	100.00	NA	98.27	99.17	97.54	95.00	98.44	100.00	98.98	100.00	98.29	100.00	100.00	100.00	99.22	-0.78	0.022441	0.401090
K	intron_retention		chr20	-	chr20:34214304-34214488				chr20:34214303-34214304;chr20:34214488-34214489		11.35	11.55	14.29	15.24	11.54	14.88	6.25	4.76	0.00	0.00	6.67	0.00	5.56	3.70	6.25	5.13	0.00	0.00	17.22	17.54	16.67	14.29	16.46	21.28	13.21	10.67	13.04	15.91	14.67	16.22	17.33	18.92	18.56	19.18	18.06	21.55	12.38	11.01	-1.37	0.980245	1.000000
K	intron_retention	GRINA	chr8	+	chr8:145066247-145066412				chr8:145066246-145066247;chr8:145066412-145066413		9.75	15.27	12.84	13.26	13.40	12.50	1.44	1.38	1.52	1.97	0.84	2.41	1.79	1.85	2.42	1.88	1.37	1.78	10.96	11.06	10.90	15.72	14.05	20.94	10.20	7.96	10.01	10.79	9.24	11.13	12.19	15.59	16.49	15.69	11.91	15.86	10.58	8.86	-1.72	0.835291	1.000000
K	alternative_first_exon	HNRNPUL1	chr19	+	chr19:41770891-41774127,chr19:41771027-41774127,chr19:41768922-41774127;chr19:41768488-41774127;chr19:41771249-41774127	chr19:41770598-41774127,chr19:41770704-41774127	chr19:41768401-41768487;chr19:41771027-41771248	chr19:41770327-41770597			70.00	94.74	75.41	NA	NA	NA	95.10	64.10	78.05	90.00	91.51	90.91	95.42	65.67	77.78	94.44	92.62	89.47	NA	53.85	NA	80.00	80.00	92.31	93.33	71.79	76.92	NA	100.00	NA	NA	62.50	NA	89.47	81.48	73.08	94.92	65.67	-29.25	0.000600	0.015511
K	alternative_acceptor	PSMB8-AS1	chr6	+	chr6:32812648-32813194	chr6:32812648-32813106		chr6:32813107-32813194	chr6:32813194-32813195		99.10	100.00	96.40	98.84	100.00	99.74	80.65	98.52	98.24	95.08	82.61	97.48	83.33	97.93	98.85	93.85	89.47	96.99	100.00	98.94	99.02	100.00	100.00	98.98	100.00	99.24	97.58	98.18	90.00	99.38	98.77	99.31	95.74	100.00	100.00	99.20	97.87	98.85	0.98	0.195081	0.660713
K	jcn_only_AA	CAPN10,SEPT2	chr2	+	chr2:242289619-242291381	chr2:242289619-242291357		chr2:242291358-242291381	chr2:242291381-242291382		0.00	0.00	0.00	NA	0.00	0.00	2.94	2.41	2.27	2.56	2.79	1.65	2.42	4.82	3.37	1.43	2.72	0.00	9.09	0.00	0.00	0.00	3.51	0.00	NA	0.00	0.00	0.00	4.65	8.33	0.00	2.78	NA	1.64	3.64	0.00	2.68	0.00	-2.68	0.314593	0.663989
K	intron_retention		chr17	+	chr17:80399766-80400052				chr17:80399765-80399766;chr17:80400052-80400053		10.26	7.34	26.32	7.14	4.65	7.41	8.33	5.26	NA	NA	NA	NA	7.69	5.00	4.00	NA	NA	NA	7.25	3.70	9.09	NA	12.50	NA	3.47	2.78	11.76	0.00	8.00	4.00	8.33	14.29	8.33	NA	18.18	21.43	7.52	5.13	-2.39	0.430837	1.000000
K	cassette	STOML2	chr9	-	chr9:35102192-35103046	chr9:35102192-35102682;chr9:35102821-35103046		chr9:35102683-35102820			86.67	100.00	96.30	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	92.31	100.00	100.00	NA	NA	92.31	100.00	NA	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.16	-3.84	0.203802	0.709176
N	alternative_acceptor	PGS1	chr17	+	chr17:76415757-76420141;chr17:76415757-76416294	chr17:76415757-76419272		chr17:76416295-76419272;chr17:76419273-76420141	chr17:76419272-76419273;chr17:76420141-76420142		5.17	19.35	9.92	4.35	18.52	4.76	7.14	4.17	4.11	13.04	8.33	16.67	16.67	3.45	7.92	15.00	NA	15.38	13.33	5.88	20.00	8.00	27.59	11.67	NA	28.89	24.44	18.18	20.00	4.26	3.23	8.82	9.52	34.29	13.33	9.17	13.33	4.67	-8.66	0.342292	0.709013
K	cassette	STARD3	chr17	+	chr17:37814776-37815303	chr17:37814776-37814974;chr17:37815074-37815303		chr17:37814975-37815073			89.13	91.49	91.55	100.00	90.24	NA	87.32	96.00	89.47	100.00	95.65	90.00	94.44	92.86	80.00	87.88	94.55	100.00	84.62	88.37	81.82	100.00	88.33	92.59	70.83	83.64	89.83	95.24	88.46	84.62	83.33	87.67	85.71	81.25	83.61	80.00	86.51	88.75	2.24	0.443131	0.746613
N	alternative_donor	MCOLN1	chr19	+	chr19:7593117-7593482	chr19:7593144-7593482		chr19:7593117-7593143	chr19:7593116-7593117		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	98.31	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	84.62	81.25	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	alternative_donor	UPF1	chr19	+	chr19:18963881-18964060	chr19:18963914-18964060		chr19:18963881-18963913	chr19:18963880-18963881		0.00	0.00	15.15	NA	NA	NA	6.56	2.63	3.57	7.27	7.06	8.51	6.35	5.56	9.09	6.67	5.81	4.26	NA	5.26	NA	10.00	8.70	8.00	0.00	9.68	7.14	0.00	9.09	NA	NA	4.17	NA	3.57	6.67	3.03	3.17	5.26	2.08	0.589865	0.799844
K	intron_retention	HNRNPA1	chr12	+	chr12:54680517-54680736				chr12:54680516-54680517;chr12:54680736-54680737		30.00	12.82	14.58	10.64	8.77	6.45	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	12.12	NA	NA	8.97	12.12	15.48	12.82	12.99	16.95	9.15	23.53	11.76	23.53	11.94	12.73	20.00	18.18	11.80	22.22	14.29	14.89	9.06	21.77	12.71	0.062835	1.000000
N	cassette	GAK	chr4	-	chr4:891947-907394;chr4:891947-905460;chr4:891947-925830	chr4:891947-898424;chr4:898568-905460,chr4:898568-925830,chr4:898568-907394		chr4:898425-898567			90.62	100.00	81.03	NA	100.00	NA	95.56	98.48	97.73	100.00	100.00	100.00	100.00	98.39	93.88	100.00	97.37	100.00	NA	86.84	100.00	95.24	96.00	100.00	NA	95.35	93.75	100.00	90.48	91.67	91.67	80.43	93.75	95.00	100.00	89.36	97.78	93.51	-4.27	0.166354	0.709176
K	alternative_acceptor	DEF8	chr16	+	chr16:90021675-90023948;chr16:90021675-90023918	chr16:90021675-90023880		chr16:90023881-90023918;chr16:90023919-90023948	chr16:90023918-90023919;chr16:90023948-90023949		9.52	11.39	8.70	3.33	5.08	2.78	15.38	5.88	0.00	3.85	4.88	6.25	22.86	4.35	0.00	0.00	11.43	0.00	13.51	7.41	2.70	4.17	6.38	0.00	9.09	6.67	8.33	0.00	9.68	0.00	5.56	7.89	10.34	4.88	3.92	4.88	12.45	6.28	-6.17	0.014950	0.497484
N	cassette	SLC11A1	chr2	+	chr2:219252679-219257703;chr2:219254752-219256098;chr2:219254752-219257703	chr2:219252679-219255920,chr2:219254752-219255920;chr2:219256011-219257703,chr2:219256011-219256098		chr2:219255921-219256010			94.96	100.00	91.78	100.00	94.74	100.00	100.00	99.13	100.00	100.00	100.00	100.00	100.00	99.14	100.00	100.00	100.00	100.00	85.71	95.89	91.34	96.30	93.94	100.00	80.00	98.12	97.22	97.26	100.00	100.00	97.26	94.27	100.00	93.59	92.75	96.00	100.00	97.69	-2.31	0.439859	0.745000
K	jcn_only_AA	ABR	chr17	-	chr17:909361-910404	chr17:909410-910404		chr17:909361-909409	chr17:909360-909361		91.13	92.86	90.85	90.91	95.45	77.78	94.31	95.45	92.05	95.86	92.83	96.50	88.89	92.23	88.37	92.31	93.12	93.68	NA	93.33	83.33	93.48	90.48	90.51	100.00	93.86	90.91	91.23	90.14	94.00	94.20	92.68	NA	95.41	92.22	92.43	93.59	93.59	0.01	0.801080	0.916010
N	alternative_donor		chr1	-	chr1:1718493-1718929;chr1:1718493-1718764	chr1:1718493-1718760		chr1:1718761-1718764;chr1:1718765-1718929	chr1:1718764-1718765;chr1:1718929-1718930		92.52	94.07	91.55	88.61	92.63	92.00	93.16	90.67	90.83	90.00	91.57	90.98	91.89	92.26	90.08	89.61	90.09	91.08	92.77	92.06	91.23	90.91	90.16	88.89	95.18	91.10	90.55	92.47	88.42	89.92	92.37	91.38	94.55	90.70	93.08	91.15	93.61	92.16	-1.45	0.015589	0.256447
K	intron_retention	BET1L	chr11	-	chr11:206044-207302				chr11:206043-206044;chr11:207302-207303		4.00	0.00	4.35	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	5.88	0.00	15.38	5.88	5.00	0.00	5.88	0.00	0.00	0.00	0.00	0.695007	1.000000
K	intron_retention		chr22	-	chr22:19124946-19125727				chr22:19124945-19124946;chr22:19125727-19125728		0.00	0.00	3.57	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.57	2.78	5.00	3.33	0.00	0.00	0.00	0.00	0.00	0.963294	1.000000
K	jcn_only_AD	ACP2,MTCH2	chr11	-	chr11:47660604-47663952	chr11:47660604-47663930		chr11:47663931-47663952	chr11:47663952-47663953		84.21	100.00	95.00	91.67	96.55	NA	92.62	93.02	96.00	94.64	94.41	93.64	92.81	93.65	97.01	92.76	94.51	95.18	85.71	92.00	96.97	91.67	91.35	93.10	NA	91.43	88.46	94.00	91.04	92.68	77.78	89.13	82.35	86.49	88.54	92.93	92.62	91.72	-0.91	0.628947	0.817497
K	intron_retention	KDM1A	chr1	+	chr1:23405671-23406045				chr1:23405670-23405671;chr1:23406045-23406046		15.00	0.00	12.12	0.00	12.50	NA	3.23	NA	0.00	1.79	7.69	0.00	5.26	NA	3.12	0.00	3.33	0.00	0.00	10.00	0.00	0.00	6.98	0.00	NA	13.33	14.89	0.00	3.85	0.00	7.14	5.45	0.00	0.00	2.63	0.00	0.00	11.66	11.66	0.313159	1.000000
K	intron_retention	HECTD3	chr1	-	chr1:45470050-45470271				chr1:45470049-45470050;chr1:45470271-45470272		4.76	7.69	12.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.11	0.00	0.00	5.88	0.00	NA	0.00	10.34	0.00	0.00	0.00	5.56	0.00	NA	4.17	3.23	5.88	0.00	2.38	2.38	0.714531	1.000000
N	cassette	CAMK1	chr3	-	chr3:9801435-9803144	chr3:9801435-9802339;chr3:9802453-9803144		chr3:9802340-9802452			93.18	89.69	90.62	100.00	93.66	100.00	99.50	100.00	100.00	100.00	99.00	98.72	100.00	100.00	NA	100.00	100.00	100.00	90.70	88.00	97.83	93.94	89.44	96.15	95.12	100.00	84.78	96.77	95.43	100.00	83.33	91.30	86.12	93.83	92.31	100.00	92.91	96.59	3.68	0.882961	0.963803
K	alternative_acceptor	MBD1	chr18	-	chr18:47796182-47799046;chr18:47797911-47799046	chr18:47796189-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		16.33	28.00	22.39	NA	25.00	NA	25.00	25.00	32.00	26.09	26.67	42.86	23.08	30.00	12.50	24.00	28.12	33.33	0.00	14.29	18.18	17.86	18.75	17.24	NA	25.00	15.69	38.10	31.25	36.36	17.50	16.42	13.33	21.95	15.22	25.93	23.08	21.25	-1.83	0.564662	0.831700
K	alternative_acceptor	ATP5G3	chr2	-	chr2:176046195-176046383	chr2:176046212-176046383		chr2:176046195-176046211	chr2:176046194-176046195		0.00	0.00	1.56	0.00	0.00	0.00	0.89	0.00	0.00	0.42	0.87	0.77	0.61	0.00	1.03	1.63	1.00	0.34	0.00	1.92	0.00	1.18	1.58	0.00	0.00	0.00	1.75	0.00	0.73	0.00	5.00	2.74	1.23	2.53	2.86	2.25	0.30	0.00	-0.30	0.448948	0.755217
N	jcn_only_AA	DDX3X	chrX	+	chrX:41206266-41206570;chrX:41206266-41206564	chrX:41206266-41206567		chrX:41206565-41206567;chrX:41206568-41206570	chrX:41206567-41206568;chrX:41206570-41206571		39.25	45.83	36.70	42.86	29.41	34.48	25.69	27.81	26.72	25.00	27.22	29.03	26.50	31.28	32.48	32.53	26.47	28.51	40.00	36.79	37.04	34.74	32.91	35.29	NA	39.22	36.76	27.37	29.27	28.92	34.70	39.08	48.15	40.93	36.80	37.77	40.00	35.75	-4.25	0.657494	0.847336
K	cassette	TUFM	chr16	-	chr16:28856377-28857232	chr16:28856377-28856634;chr16:28856802-28857232		chr16:28856635-28856801			93.33	98.39	94.12	100.00	93.33	NA	100.00	96.77	98.44	100.00	100.00	100.00	98.06	100.00	100.00	100.00	100.00	100.00	100.00	95.45	96.00	94.00	97.39	100.00	100.00	100.00	97.10	100.00	97.89	97.62	83.33	91.94	100.00	96.36	96.00	93.02	100.00	96.11	-3.89	0.129944	0.709176
K	alternative_first_exon	DDAH2	chr6	-	chr6:31696523-31697827	chr6:31696523-31696641	chr6:31697828-31698394	chr6:31696642-31697569			98.25	94.12	100.00	NA	95.74	NA	100.00	99.34	100.00	96.77	100.00	96.55	97.62	98.91	100.00	94.12	97.67	100.00	92.59	94.00	92.59	100.00	87.10	NA	96.55	96.52	95.56	94.12	95.16	100.00	88.57	92.00	96.00	93.55	97.30	90.91	96.28	97.38	1.11	0.916230	0.951881
N	cassette	FDPS	chr1	+	chr1:155289480-155290199	chr1:155289480-155289647;chr1:155289720-155290199		chr1:155289648-155289719			100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	89.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	ITGB1BP1	chr2	-	chr2:9548331-9552397	chr2:9548335-9552397		chr2:9548331-9548334	chr2:9548330-9548331		100.00	100.00	95.45	100.00	93.48	100.00	96.74	100.00	100.00	97.98	97.89	95.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	93.55	96.23	95.83	98.36	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	93.55	93.62	96.49	98.25	93.48	97.92	100.00	2.08	0.967101	0.988395
N	alternative_acceptor	CD276	chr15	+	chr15:73996814-74000703;chr15:73996814-74000684	chr15:73996814-74000679		chr15:74000680-74000684;chr15:74000685-74000703	chr15:74000684-74000685;chr15:74000703-74000704		97.06	100.00	NA	NA	91.30	80.00	88.24	100.00	100.00	100.00	90.24	100.00	100.00	100.00	NA	92.13	87.18	84.71	NA	100.00	100.00	100.00	88.89	93.10	NA	100.00	100.00	95.45	100.00	100.00	88.46	NA	100.00	88.10	90.57	91.07	100.00	100.00	0.00	0.885618	0.961240
N	jcn_only_AD	DDIT3	chr12	-	chr12:57911537-57914200;chr12:57911537-57914196;chr12:57911537-57912380	chr12:57911537-57917149		chr12:57912381-57914196;chr12:57914197-57914200;chr12:57914201-57917149	chr12:57914196-57914197;chr12:57914200-57914201;chr12:57917149-57917150		0.00	0.00	7.69	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	TFEC	chr7	-	chr7:115580499-115581946;chr7:115580778-115581946	chr7:115580986-115581946		chr7:115580499-115580777;chr7:115580778-115580985	chr7:115580498-115580499;chr7:115580777-115580778		100.00	97.22	100.00	96.97	96.55	95.12	96.61	93.92	96.49	97.30	95.89	89.84	98.31	95.60	97.33	96.43	93.06	92.86	94.44	96.18	98.28	96.08	96.97	96.08	NA	98.71	100.00	98.10	100.00	96.92	97.12	99.24	95.45	100.00	98.18	100.00	96.61	96.65	0.04	0.656646	0.874938
K	intron_retention		chr1	-	chr1:153903334-153903422				chr1:153903333-153903334;chr1:153903422-153903423		13.95	30.77	14.55	NA	8.70	NA	4.88	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	15.00	10.00	18.18	18.97	13.64	30.00	6.67	11.54	11.11	8.33	7.14	21.05	19.44	17.65	12.82	14.89	14.63	17.65	10.31	-7.34	0.850168	1.000000
N	jcn_only_AA	VPS28	chr8	-	chr8:145650424-145651065;chr8:145650384-145651065	chr8:145650435-145651065		chr8:145650384-145650423;chr8:145650424-145650434	chr8:145650383-145650384;chr8:145650423-145650424		86.11	78.53	83.87	86.89	85.33	84.21	91.35	93.14	89.57	90.11	90.78	91.78	85.00	92.59	95.18	89.62	87.95	95.00	81.82	81.03	88.73	91.67	84.38	88.89	82.76	89.11	91.67	91.11	86.53	87.50	81.97	83.02	81.82	87.67	88.89	88.54	82.29	87.61	5.32	0.202504	0.663989
K	cassette	DNAJC4	chr11	+	chr11:63998413-63999342	chr11:63998413-63998503;chr11:63998620-63999342		chr11:63998504-63998619			0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	2.38	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	jcn_only_AD	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095537;chr10:74094376-74095591	chr10:74094376-74095543		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		0.00	0.00	3.92	9.76	5.71	4.81	11.11	5.71	9.30	9.09	8.00	5.88	0.00	7.69	8.33	13.33	10.87	12.00	3.66	5.13	6.78	0.00	11.11	0.00	4.76	9.09	0.00	3.33	0.00	10.20	0.00	0.00	2.74	5.41	4.08	7.84	3.20	5.42	2.22	0.705688	0.847650
N	cassette	SDS	chr12	-	chr12:113836412-113836916;chr12:113835198-113836916	chr12:113836412-113836511,chr12:113835198-113836511;chr12:113836652-113836916		chr12:113836512-113836651			96.00	100.00	94.92	NA	98.70	NA	100.00	100.00	99.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.80	98.41	100.00	98.17	100.00	100.00	100.00	98.64	100.00	100.00	100.00	96.47	98.23	87.88	100.00	98.51	100.00	100.00	98.90	-1.10	0.859376	0.951512
N	coord_cassette	TNFSF12-TNFSF13,TNFSF13	chr17	+	chr17:7462615-7463365	chr17:7462615-7462940;chr17:7463020-7463162;chr17:7463211-7463365		chr17:7462941-7463019;chr17:7463163-7463210			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention		chr17	+	chr17:45696531-45697102				chr17:45696530-45696531;chr17:45697102-45697103		10.20	0.00	10.20	0.00	4.35	18.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.82	2.17	0.00	0.00	0.00	3.33	2.86	21.74	8.16	18.42	21.43	10.26	0.00	0.00	0.00	5.41	5.56	6.78	0.00	12.82	10.64	17.54	0.00	4.45	4.45	0.971037	1.000000
K	cassette	CCNDBP1	chr15	+	chr15:43485002-43486612	chr15:43485002-43486278;chr15:43486336-43486612		chr15:43486279-43486335			8.93	32.35	6.86	12.50	19.57	NA	22.22	10.45	6.54	18.75	18.46	20.00	15.38	4.62	5.00	15.91	14.89	15.15	17.39	9.80	12.24	12.50	12.50	19.05	NA	7.23	10.00	23.08	25.86	17.65	6.67	6.90	11.11	12.82	10.20	8.33	17.39	8.08	-9.31	0.029878	0.433081
N	alternative_acceptor	GADD45G	chr9	+	chr9:92220449-92220560;chr9:92220449-92220581	chr9:92220449-92220672		chr9:92220561-92220581;chr9:92220582-92220672	chr9:92220581-92220582;chr9:92220672-92220673		2.22	0.00	0.00	5.45	6.90	7.47	0.00	0.00	6.38	9.22	4.55	6.18	NA	5.08	3.23	8.05	14.29	7.62	3.12	0.00	4.08	4.12	7.69	5.88	0.00	0.00	0.00	5.88	9.38	8.54	0.00	0.00	0.00	4.69	0.00	5.73	0.00	0.00	0.00	0.589275	0.844088
N	coord_cassette	CARD19	chr9	+	chr9:95870110-95874499	chr9:95870110-95871272;chr9:95871375-95872849;chr9:95873004-95874160;chr9:95874221-95874499		chr9:95871273-95871374;chr9:95872850-95873003;chr9:95874161-95874220			92.59	100.00	100.00	87.50	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	89.47	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	95.24	92.59	96.97	100.00	100.00	100.00	0.00	0.770704	0.887901
N	alternative_donor	MYO9B	chr19	+	chr19:17313752-17313955;chr19:17313794-17313955;chr19:17313758-17313955;chr19:17313693-17313955	chr19:17313814-17313955		chr19:17313693-17313751;chr19:17313752-17313757;chr19:17313758-17313793;chr19:17313794-17313813	chr19:17313692-17313693;chr19:17313751-17313752;chr19:17313757-17313758;chr19:17313793-17313794		2.91	3.75	3.92	4.35	3.17	NA	2.63	5.33	1.45	1.71	1.19	0.00	3.38	5.45	5.05	1.33	1.44	1.01	0.00	2.47	4.17	3.51	4.91	4.15	2.86	4.96	2.35	3.12	6.33	1.54	1.49	2.41	0.00	4.27	1.51	3.00	2.75	3.94	1.19	0.117475	0.529698
N	cassette	HNRNPD	chr4	-	chr4:83279974-83292680;chr4:83279974-83294598	chr4:83279974-83280623;chr4:83280793-83292680,chr4:83280793-83294598		chr4:83280624-83280792			100.00	100.00	95.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.19	100.00	100.00	97.18	100.00	100.00	100.00	100.00	94.44	96.83	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.202079	0.709176
N	cassette	SH3BP2	chr4	+	chr4:2834140-2877622;chr4:2834140-2835423	chr4:2834140-2834716;chr4:2834777-2877622,chr4:2834777-2835423		chr4:2834717-2834776			100.00	94.85	96.20	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	97.30	96.15	100.00	100.00	96.83	100.00	100.00	100.00	92.86	97.73	98.04	98.25	100.00	100.00	100.00	100.00	0.00	0.527015	0.803209
K	intron_retention		chr11	+	chr11:64033877-64033966				chr11:64033876-64033877;chr11:64033966-64033967		7.50	6.12	6.41	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.04	5.26	2.86	3.23	8.14	0.00	8.20	5.88	6.17	0.00	2.99	0.00	10.00	9.88	6.15	2.50	1.85	2.38	6.13	5.57	-0.56	0.626543	1.000000
K	intron_retention	MAN1B1	chr9	+	chr9:139996125-140000576				chr9:139996124-139996125;chr9:140000576-140000577		6.06	9.84	15.38	NA	16.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.94	7.69	3.03	0.00	0.00	NA	7.14	11.54	0.00	0.00	7.69	0.00	4.17	4.00	2.78	6.67	0.00	0.00	3.45	6.98	7.14	4.00	3.70	6.06	5.65	5.03	-0.62	0.988501	1.000000
K	cassette	YBX3	chr12	-	chr12:10856748-10865809	chr12:10856748-10862506;chr12:10862714-10865809		chr12:10862507-10862713			46.55	60.53	46.62	57.89	62.50	46.15	58.06	56.25	53.67	55.61	54.26	55.97	62.50	63.64	51.78	50.92	56.73	51.28	46.15	45.83	45.00	59.79	59.04	52.25	NA	47.50	47.85	54.55	64.91	46.21	35.00	44.26	40.00	56.52	53.57	50.00	58.06	47.02	-11.04	0.487106	0.774715
N	cassette	CRELD2	chr22	+	chr22:50316356-50318007;chr22:50316356-50319064	chr22:50316356-50316881;chr22:50316966-50318007,chr22:50316966-50319064		chr22:50316882-50316965			100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	84.62	92.59	92.86	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	NDUFB10	chr16	+	chr16:2011613-2011797	chr16:2011638-2011797		chr16:2011613-2011637	chr16:2011612-2011613		94.44	93.13	93.88	96.81	94.14	96.83	98.10	100.00	98.25	96.72	98.06	96.15	95.69	100.00	97.83	98.78	98.10	97.78	96.25	100.00	95.83	100.00	96.30	94.29	95.04	100.00	100.00	100.00	96.19	97.53	95.24	96.25	97.38	96.08	95.74	97.33	95.97	100.00	4.03	0.107761	0.646283
N	alternative_donor	NMRK1	chr9	-	chr9:77681757-77683911	chr9:77681757-77682497		chr9:77682498-77683911	chr9:77683911-77683912		2.38	0.00	5.88	0.00	0.00	0.00	0.00	1.96	1.92	0.00	0.00	0.00	3.85	2.13	4.62	NA	0.00	10.00	0.00	5.00	0.00	0.00	2.33	11.11	0.00	6.58	4.95	6.25	2.17	2.30	1.89	3.90	0.00	4.35	7.69	6.56	0.00	2.25	2.25	0.027690	0.322430
N	jcn_only_AA		chr8	+	chr8:20083331-20090707	chr8:20083331-20083949					97.96	100.00	98.08	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	96.30	95.65	100.00	92.73	88.24	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	92.86	100.00	94.87	100.00	100.00	97.51	-2.49	0.853188	0.941973
K	intron_retention	TMEM208	chr16	+	chr16:67262785-67262878				chr16:67262784-67262785;chr16:67262878-67262879		1.61	2.48	1.41	1.98	0.00	2.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	1.56	1.28	5.26	2.27	4.17	0.00	0.00	1.69	0.00	3.17	0.00	3.09	5.10	2.69	1.52	2.44	1.02	0.24	0.78	0.54	0.988696	1.000000
N	alternative_last_exon	SCAF11	chr12	-	chr12:46353998-46355482,chr12:46345472-46355482,chr12:46347641-46355482;chr12:46349976-46355482;chr12:46328289-46355482;chr12:46345511-46355482	chr12:46355106-46355482	chr12:46348517-46349975;chr12:46328230-46328288;chr12:46345433-46345510	chr12:46354238-46355105			66.67	68.75	37.50	NA	NA	NA	10.00	16.67	20.83	36.36	21.43	35.00	6.67	17.24	26.09	37.14	24.24	47.06	NA	62.50	NA	71.43	78.57	46.15	41.67	58.33	42.86	81.82	75.00	60.00	90.91	64.29	NA	50.00	47.83	31.58	25.84	60.41	34.58	0.321753	0.521724
N	alternative_acceptor	EEF1D	chr8	-	chr8:144663499-144668388	chr8:144665447-144668388		chr8:144663499-144665446	chr8:144663498-144663499		3.98	2.17	4.06	2.17	1.09	1.03	0.00	0.88	0.51	0.74	0.62	0.00	0.68	0.75	0.87	0.80	0.60	0.95	1.19	5.04	1.42	4.51	3.23	5.04	1.35	4.00	2.66	3.01	1.40	2.66	5.88	5.04	1.49	4.95	3.43	5.36	1.27	3.99	2.72	0.047926	0.570243
N	alternative_donor	C14orf119	chr14	+	chr14:23564829-23566866;chr14:23565231-23566866	chr14:23565160-23566866		chr14:23564829-23565159;chr14:23565160-23565230	chr14:23564828-23564829;chr14:23565159-23565160		3.03	0.00	2.22	0.00	0.00	NA	1.25	1.39	1.45	2.94	1.12	0.00	0.98	1.47	1.37	1.25	1.12	0.00	0.00	1.20	2.17	2.00	0.81	2.08	7.14	2.90	2.56	0.00	0.99	0.00	1.52	3.03	0.00	1.61	2.94	5.17	0.49	1.50	1.01	0.774077	0.914596
N	alternative_acceptor	NAGK,RABL2A	chr2	+	chr2:71299882-71300592;chr2:71299882-71300611	chr2:71299882-71299955		chr2:71299956-71300592;chr2:71300593-71300611	chr2:71300592-71300593;chr2:71300611-71300612		2.54	2.01	6.52	0.00	1.10	1.82	1.18	0.90	1.16	0.00	0.46	0.39	2.05	0.91	2.99	1.49	1.00	1.55	2.07	2.48	1.41	1.20	1.70	4.41	3.42	2.46	3.51	3.91	1.88	0.86	2.07	4.29	1.12	4.50	3.30	2.59	2.03	2.26	0.23	0.864605	0.954648
N	alternative_donor	SDHB	chr1	-	chr1:17354361-17355148;chr1:17354361-17355119	chr1:17354361-17355094		chr1:17355095-17355119;chr1:17355120-17355148	chr1:17355119-17355120;chr1:17355148-17355149		98.18	100.00	98.11	100.00	96.77	100.00	100.00	97.56	92.16	96.34	99.07	96.92	95.05	96.58	96.67	97.56	98.04	100.00	100.00	94.03	98.15	96.15	95.74	94.00	100.00	95.68	100.00	100.00	100.00	92.68	100.00	100.00	91.84	93.15	94.59	100.00	100.00	97.07	-2.93	0.640979	0.838031
K	alternative_last_exon	VPS33B	chr15	-	chr15:91543199-91543719;chr15:91542285-91543719	chr15:91543206-91543719	chr15:91541646-91542284	chr15:91543130-91543205			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	93.33	100.00	100.00	NA	NA	100.00	93.94	97.56	92.59	100.00	100.00	100.00	100.00	100.00	0.00	0.568912	0.707810
K	alternative_acceptor	AD000671.6,IGFLR1	chr19	-	chr19:36232125-36233296	chr19:36232130-36233296		chr19:36232125-36232129	chr19:36232124-36232125		25.86	28.02	25.68	18.87	27.92	26.56	29.29	36.36	36.36	26.67	31.94	22.86	28.04	28.00	40.00	33.33	29.07	32.50	23.58	29.69	30.36	24.05	26.53	26.09	24.77	28.57	35.00	30.30	29.19	30.11	23.60	23.14	23.05	23.40	30.10	31.75	26.39	28.29	1.89	0.252266	0.709013
K	jcn_only_AA	IDUA,TMEM33	chr4	+	chr4:41951403-41956086	chr4:41951403-41955776		chr4:41955777-41956086	chr4:41956086-41956087		0.00	20.00	1.67	0.00	0.00	NA	0.00	0.00	0.00	2.63	0.00	1.72	0.00	0.00	0.00	1.56	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.363217	0.663989
N	cassette	UBTF	chr17	-	chr17:42287842-42288406	chr17:42287842-42288159;chr17:42288316-42288406		chr17:42288160-42288315			100.00	100.00	97.83	NA	92.86	NA	100.00	100.00	100.00	100.00	96.23	NA	100.00	100.00	100.00	100.00	96.08	NA	100.00	95.45	100.00	NA	97.56	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	RAPGEF1	chr9	-	chr9:134459800-134459904				chr9:134459799-134459800;chr9:134459904-134459905		3.23	0.00	0.81	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.36	1.79	0.00	2.44	2.67	0.00	0.00	0.00	5.41	3.70	NA	1.83	1.44	0.90	0.00	1.22	1.22	0.326282	1.000000
N	cassette	PPP6R2	chr22	+	chr22:50870759-50874795	chr22:50870759-50873394;chr22:50873511-50874795		chr22:50873395-50873510			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	TCIRG1	chr11	+	chr11:67809299-67810109				chr11:67809298-67809299;chr11:67810109-67810110		4.71	12.24	9.63	NA	6.45	NA	0.59	0.43	0.00	1.03	1.24	0.00	1.10	0.78	0.90	1.79	0.89	1.56	0.00	7.09	8.51	2.33	5.93	4.00	10.71	4.59	7.10	3.70	5.19	0.00	8.82	7.53	0.00	5.68	10.00	8.00	0.84	4.65	3.81	0.970195	1.000000
K	cassette	APP	chr21	-	chr21:27354791-27394155;chr21:27369732-27394155	chr21:27369732-27372329,chr21:27354791-27372329;chr21:27372498-27394155		chr21:27372330-27372497			95.30	100.00	95.31	NA	100.00	NA	97.42	97.67	97.13	98.31	97.74	98.46	98.38	98.55	97.53	99.05	97.83	97.98	NA	96.61	92.31	100.00	96.39	98.18	100.00	98.08	97.80	97.73	97.75	96.59	100.00	96.55	NA	96.30	97.96	98.42	99.19	97.88	-1.31	0.212707	0.709176
K	intron_retention		chr19	-	chr19:5587779-5587878				chr19:5587778-5587779;chr19:5587878-5587879		6.56	1.16	4.29	1.32	2.11	0.97	0.00	NA	NA	0.00	0.00	NA	5.56	0.00	0.00	0.00	0.00	NA	4.20	4.88	3.80	0.00	3.95	3.12	0.00	0.00	5.00	0.00	2.13	6.06	5.26	5.41	4.79	2.22	5.00	4.76	2.68	4.88	2.20	0.745644	1.000000
K	jcn_only_AA	NFYC	chr1	+	chr1:41223967-41228661	chr1:41223967-41228559		chr1:41228560-41228661	chr1:41228661-41228662		100.00	100.00	100.00	NA	100.00	NA	97.78	96.77	100.00	100.00	100.00	100.00	96.43	100.00	92.31	100.00	93.44	90.91	100.00	100.00	100.00	100.00	97.50	100.00	NA	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	97.62	97.73	100.00	100.00	100.00	0.00	0.518483	0.760908
K	intron_retention	ATP6V1B2	chr8	+	chr8:20082918-20083199				chr8:20082917-20082918;chr8:20083199-20083200		42.86	31.58	36.96	35.29	50.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39.39	48.72	31.58	48.15	42.86	35.71	26.98	47.50	39.22	50.00	35.00	NA	41.67	45.76	26.92	52.63	42.86	59.09	29.28	45.18	15.90	0.036578	1.000000
K	intron_retention		chr19	-	chr19:49316606-49316712				chr19:49316605-49316606;chr19:49316712-49316713		0.00	1.80	10.00	0.00	2.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.26	4.76	1.35	0.00	2.47	0.00	6.38	2.86	0.00	0.00	0.00	0.00	12.77	4.00	6.32	4.65	1.67	0.00	3.03	1.43	-1.60	0.745967	1.000000
K	alternative_last_exon	RPL28	chr19	+	chr19:55898062-55899302;chr19:55898062-55899297;chr19:55898062-55898652	chr19:55898062-55898134	chr19:55899298-55900256;chr19:55898653-55898978	chr19:55898135-55898599			4.84	0.72	3.48	1.44	0.54	0.39	0.00	0.78	0.60	1.46	0.90	1.02	0.40	1.04	0.87	1.32	0.73	1.06	0.36	4.39	1.08	7.07	2.22	6.38	0.16	4.71	1.92	4.90	1.73	2.83	6.55	6.44	0.96	6.36	3.96	6.44	0.38	4.55	4.17	0.016873	0.184325
N	jcn_only_AD	MCOLN1	chr19	+	chr19:7593117-7593482	chr19:7593144-7593482		chr19:7593117-7593143	chr19:7593116-7593117		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	90.32	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	intron_retention		chr16	+	chr16:3536233-3536786				chr16:3536232-3536233;chr16:3536786-3536787		100.00	96.67	100.00	100.00	100.00	92.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	97.56	100.00	96.46	100.00	97.40	100.00	100.00	96.43	100.00	100.00	100.00	100.00	98.08	100.00	96.61	96.61	97.67	100.00	100.00	96.77	98.84	100.00	1.16	0.520964	1.000000
K	intron_retention	PLK3	chr1	+	chr1:45269919-45270010				chr1:45269918-45269919;chr1:45270010-45270011		7.55	0.00	6.06	3.03	5.13	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.54	4.17	3.26	3.95	4.00	NA	4.12	1.56	0.00	5.00	1.85	10.11	9.62	10.00	5.00	5.08	3.92	0.00	5.33	5.33	0.915083	1.000000
K	intron_retention		chr8	+	chr8:145150132-145150735				chr8:145150131-145150132;chr8:145150735-145150736		16.67	14.04	6.98	5.00	16.13	NA	3.03	0.00	3.03	4.08	2.94	3.12	4.27	3.45	3.80	4.12	2.99	0.00	9.68	11.36	15.00	24.00	8.25	20.00	21.05	3.33	9.68	13.95	4.84	22.58	15.79	20.34	14.81	11.36	8.47	18.75	11.86	7.40	-4.46	0.968995	1.000000
K	alternative_acceptor	SIL1	chr5	-	chr5:138456860-138463427	chr5:138456863-138463427		chr5:138456860-138456862	chr5:138456859-138456860		100.00	100.00	93.33	NA	92.86	NA	93.24	93.10	92.19	93.94	89.83	93.18	92.16	88.89	93.33	95.24	90.48	90.32	NA	94.44	89.29	100.00	88.24	100.00	NA	95.24	84.62	NA	100.00	NA	100.00	93.33	100.00	100.00	100.00	87.50	96.62	94.84	-1.78	0.708197	0.890280
K	jcn_only_AD	RPS10,RPS10-NUDT3	chr6	-	chr6:34392999-34393808	chr6:34392999-34393572		chr6:34393573-34393808	chr6:34393808-34393809		3.64	2.39	1.70	2.63	2.70	2.10	0.85	0.00	1.24	0.42	0.50	0.35	0.97	1.99	1.53	1.16	1.14	0.85	1.56	2.07	1.35	1.24	1.25	1.50	2.00	5.33	2.44	1.59	1.04	1.51	5.26	5.23	3.19	3.18	2.99	2.48	1.78	2.85	1.07	0.230470	0.657607
N	alternative_donor	LTBR	chr12	+	chr12:6494546-6495231	chr12:6494726-6495231		chr12:6494546-6494725	chr12:6494545-6494546		7.00	5.41	9.17	9.09	0.00	NA	0.00	0.00	1.50	1.43	0.00	0.00	0.65	0.00	1.21	0.00	0.00	0.00	14.29	4.26	2.13	4.08	3.26	6.82	NA	5.48	4.85	4.08	1.92	7.89	9.09	9.26	8.33	5.36	5.63	10.94	5.41	4.87	-0.54	0.652934	0.843350
N	alternative_donor	IFI35	chr17	+	chr17:41165352-41165492;chr17:41165346-41165492;chr17:41165391-41165492	chr17:41165397-41165492		chr17:41165346-41165351;chr17:41165352-41165390;chr17:41165391-41165396	chr17:41165345-41165346;chr17:41165351-41165352;chr17:41165390-41165391		42.33	36.84	52.63	50.00	37.50	46.38	50.00	56.22	53.47	61.54	NA	60.94	59.09	53.44	51.69	50.00	60.00	61.54	39.29	46.75	52.00	41.67	40.00	47.69	38.46	50.54	46.43	48.21	50.00	54.41	44.97	46.30	47.37	57.69	NA	44.97	43.33	48.64	5.31	0.375226	0.651640
K	jcn_only_AA	PLXND1	chr3	-	chr3:129304892-129305014	chr3:129304925-129305014		chr3:129304892-129304924	chr3:129304891-129304892		92.86	93.75	91.11	NA	NA	NA	94.72	94.12	95.65	97.22	95.22	93.98	95.98	98.15	95.08	93.14	95.44	94.81	87.50	96.77	100.00	93.33	94.81	94.87	96.83	89.66	93.42	100.00	97.22	90.00	NA	90.48	82.35	93.75	89.61	95.83	94.23	94.12	-0.11	0.399832	0.671467
N	alternative_acceptor	VPS28	chr8	-	chr8:145650424-145651065;chr8:145650384-145651065	chr8:145650435-145651065		chr8:145650384-145650423;chr8:145650424-145650434	chr8:145650383-145650384;chr8:145650423-145650424		71.15	63.11	71.01	74.19	73.49	71.43	79.55	83.33	75.51	79.07	80.30	81.82	68.66	81.82	88.24	76.09	77.78	89.47	64.63	65.62	77.46	80.95	70.31	80.00	67.74	76.60	82.43	82.22	71.74	74.60	64.52	67.86	64.29	73.53	75.51	76.09	66.19	73.88	7.69	0.187484	0.660713
N	alternative_donor	PNPLA6	chr19	+	chr19:7621969-7623735;chr19:7622171-7623735	chr19:7623614-7623735		chr19:7621969-7622170;chr19:7622171-7623613	chr19:7621968-7621969;chr19:7622170-7622171		26.51	14.04	36.62	NA	15.62	NA	3.12	4.88	0.00	0.00	8.00	0.00	5.41	4.65	14.29	8.33	3.70	NA	9.68	24.14	12.77	27.27	28.57	NA	11.11	30.19	23.44	25.00	17.14	NA	21.88	26.00	11.36	28.57	33.33	18.75	10.39	23.01	12.61	0.092781	0.480597
K	alternative_last_exon	SP110	chr2	-	chr2:231037744-231042253;chr2:231037676-231042253	chr2:231041441-231042253	chr2:231037560-231037675	chr2:231041189-231041440			98.33	100.00	88.57	100.00	100.00	100.00	80.00	87.41	82.61	NA	NA	80.77	88.24	90.21	86.79	83.72	NA	67.24	100.00	97.47	99.07	100.00	100.00	94.64	100.00	97.70	95.12	97.14	100.00	99.41	98.98	97.59	98.23	95.74	100.00	93.92	99.12	97.59	-1.53	0.882881	0.938377
K	intron_retention	SLC3A2	chr11	+	chr11:62648529-62648654				chr11:62648528-62648529;chr11:62648654-62648655		95.79	91.73	95.54	100.00	93.79	85.71	94.21	94.40	94.31	94.35	92.97	95.33	94.35	92.46	93.49	93.71	95.04	95.19	90.20	91.94	91.33	92.46	93.61	92.50	92.42	95.86	96.31	92.20	92.39	92.48	92.96	91.75	92.31	94.40	94.35	94.00	92.37	93.68	1.31	0.485626	1.000000
K	intron_retention		chr22	+	chr22:37695348-37696947				chr22:37695347-37695348;chr22:37696947-37696948		2.80	2.82	3.27	NA	0.00	NA	0.56	0.35	0.00	0.00	0.64	0.45	1.25	0.58	1.34	0.00	0.99	1.08	14.29	1.92	2.27	0.00	2.36	2.83	12.20	3.12	2.79	2.02	2.94	1.15	1.39	3.24	6.25	2.63	2.15	2.16	4.54	1.65	-2.88	0.340064	1.000000
N	alternative_donor	HEATR9	chr17	-	chr17:79872407-79872489	chr17:79872407-79872479		chr17:79872480-79872489	chr17:79872489-79872490		92.31	87.50	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	80.00	83.33	85.00	92.86	81.25	90.00	78.26	91.67	NA	88.24	91.67	90.32	89.80	100.00	100.00	91.67	100.00	100.00	90.32	-9.68	0.131687	0.543255
K	alternative_first_exon	PTMA	chr2	+	chr2:232575387-232576057,chr2:232571939-232576057,chr2:232573752-232576057,chr2:232575295-232576057,chr2:232574326-232576057,chr2:232575299-232576057,chr2:232575512-232576057;chr2:232572546-232576057	chr2:232573462-232576057	chr2:232572394-232572545	chr2:232573219-232573461			96.24	98.49	95.06	98.21	98.78	100.00	98.49	95.95	95.66	99.11	99.05	99.37	98.89	93.17	96.82	99.56	99.49	99.43	98.37	97.02	97.52	98.42	99.29	99.22	97.50	94.92	95.96	98.88	99.09	98.12	96.43	95.95	98.98	99.64	99.41	99.36	98.49	96.09	-2.39	0.002853	0.025394
K	alternative_acceptor	SRSF5	chr14	+	chr14:70237823-70237913	chr14:70237823-70237910		chr14:70237911-70237913	chr14:70237913-70237914		80.36	64.81	77.67	84.62	80.36	76.92	77.78	78.67	76.27	79.22	83.93	78.72	76.00	74.60	77.61	82.43	81.25	81.13	82.50	74.19	66.00	76.79	74.73	79.31	50.00	80.70	80.82	76.92	86.08	81.01	71.23	78.40	74.42	85.25	82.76	82.67	75.21	76.63	1.42	0.302107	0.709013
K	intron_retention		chr9	+	chr9:125149012-125152476				chr9:125149011-125149012;chr9:125152476-125152477		0.00	0.00	2.08	NA	3.12	NA	0.00	NA	NA	3.70	2.38	0.00	2.40	NA	NA	2.70	4.20	0.00	0.00	0.00	7.69	0.00	4.08	0.00	0.00	0.00	0.00	0.00	6.52	NA	0.00	0.00	0.00	0.00	4.44	0.00	0.00	0.00	0.00	0.594508	1.000000
N	cassette	TREM2	chr6	-	chr6:41126805-41130780;chr6:41126519-41129000;chr6:41126519-41130780;chr6:41126805-41129000	chr6:41126519-41127529,chr6:41126805-41127529;chr6:41127621-41130780,chr6:41127621-41129000		chr6:41127530-41127620			96.30	96.90	100.00	100.00	93.66	97.97	99.28	100.00	100.00	97.87	98.07	99.10	99.28	100.00	NA	98.34	98.36	98.60	96.95	100.00	96.88	98.98	97.75	97.74	96.89	100.00	96.55	99.00	95.71	100.00	100.00	100.00	94.97	99.10	96.69	97.66	96.93	100.00	3.07	0.053339	0.585246
K	intron_retention		chr19	-	chr19:1109423-1109504				chr19:1109422-1109423;chr19:1109504-1109505		2.80	0.00	3.00	5.51	3.70	3.49	0.00	0.00	0.00	0.37	3.33	0.42	0.00	1.41	0.79	1.35	2.08	0.92	4.17	1.47	3.41	4.57	5.56	2.49	0.00	3.16	3.11	3.03	4.88	2.89	2.70	3.24	6.82	2.94	2.86	1.92	0.00	2.08	2.08	0.821351	1.000000
K	intron_retention	AMD1	chr6	+	chr6:111214031-111214112				chr6:111214030-111214031;chr6:111214112-111214113		3.23	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.45	0.00	4.48	1.72	0.00	NA	0.00	0.00	0.00	0.00	0.00	13.04	4.12	11.76	1.27	1.52	1.96	0.00	0.72	0.72	0.798485	1.000000
N	jcn_only_AA	STARD3	chr17	+	chr17:37814776-37814961;chr17:37814776-37814974	chr17:37814776-37814991		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		0.00	0.00	4.17	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	3.08	9.38	0.00	5.45	0.00	0.00	0.00	0.00	14.71	5.26	10.34	2.17	1.39	0.00	0.00	0.98	0.98	0.519330	0.760908
K	intron_retention	DYRK4	chr12	+	chr12:4721885-4722677				chr12:4721884-4721885;chr12:4722677-4722678		0.00	0.00	0.00	0.00	0.00	4.35	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	3.70	5.00	0.00	0.00	0.00	3.03	4.00	0.00	0.00	0.00	5.00	0.00	2.08	0.00	0.00	1.82	0.00	0.00	0.00	0.532512	1.000000
K	alternative_acceptor	HS1BP3	chr2	-	chr2:20819006-20823655	chr2:20822080-20823655		chr2:20819006-20822079	chr2:20819005-20819006		3.03	0.00	4.17	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.03	0.00	0.00	2.17	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	5.41	4.35	0.00	1.51	1.51	0.075784	0.585944
K	intron_retention	MBD4	chr3	-	chr3:129152980-129155303				chr3:129152979-129152980;chr3:129155303-129155304		6.67	0.00	5.75	NA	2.63	NA	0.00	0.00	0.00	0.00	4.00	NA	2.86	0.00	0.00	0.00	3.54	NA	0.00	4.62	2.86	NA	4.76	NA	NA	2.50	8.33	0.00	2.44	0.00	0.00	6.12	5.00	3.85	8.05	8.33	0.00	1.25	1.25	0.953673	1.000000
K	intron_retention		chr1	-	chr1:203152920-203153703				chr1:203152919-203152920;chr1:203153703-203153704		2.16	0.00	1.53	NA	0.00	NA	0.27	0.23	0.13	0.63	0.44	0.41	0.00	0.00	0.00	0.00	0.00	2.13	NA	1.92	0.53	3.51	0.00	8.08	NA	3.08	0.00	0.00	1.59	3.23	1.38	0.71	0.00	2.26	1.75	4.76	0.00	1.65	1.65	0.241987	1.000000
K	intron_retention		chr14	+	chr14:103600141-103601555				chr14:103600140-103600141;chr14:103601555-103601556		1.98	5.50	1.18	0.00	2.38	1.92	0.00	0.00	0.34	0.08	0.00	0.08	0.52	0.24	1.04	0.22	0.37	0.09	3.70	1.72	2.27	1.34	1.44	1.18	10.29	1.96	1.54	1.20	1.27	0.77	2.24	2.10	5.26	1.93	1.91	1.46	4.48	1.84	-2.64	0.282147	1.000000
K	jcn_only_AD	NDUFS8	chr11	+	chr11:67798618-67799618;chr11:67798429-67799618;chr11:67798345-67799618	chr11:67798201-67799618		chr11:67798201-67798344;chr11:67798345-67798428;chr11:67798429-67798617	chr11:67798200-67798201;chr11:67798344-67798345;chr11:67798428-67798429		96.97	92.77	89.58	100.00	90.57	100.00	92.21	NA	96.77	100.00	96.83	100.00	95.24	100.00	100.00	97.87	100.00	100.00	92.31	100.00	87.14	93.33	97.92	NA	100.00	NA	100.00	100.00	100.00	NA	93.33	96.43	95.31	90.48	100.00	93.33	94.00	98.48	4.48	0.190123	0.657607
K	intron_retention	DRAP1	chr11	+	chr11:65687469-65687886				chr11:65687468-65687469;chr11:65687886-65687887		83.61	90.00	86.36	93.75	84.44	86.67	90.00	86.15	78.05	93.10	87.50	90.48	66.67	81.82	82.86	82.76	88.37	85.71	83.72	81.25	83.78	82.35	85.37	95.00	73.68	86.15	81.82	85.71	87.80	93.55	80.52	78.57	86.05	84.21	85.71	90.00	84.88	82.72	-2.17	0.903726	1.000000
K	intron_retention		chr14	-	chr14:35565840-35565914				chr14:35565839-35565840;chr14:35565914-35565915		6.12	0.00	7.69	27.27	3.12	NA	0.00	1.56	1.89	3.57	0.00	0.00	3.33	1.69	0.00	0.00	0.00	0.00	0.00	10.42	3.70	7.69	8.00	5.13	NA	4.94	8.62	6.06	2.33	12.50	10.53	16.22	14.29	12.24	8.20	8.47	0.00	5.53	5.53	0.841101	1.000000
K	intron_retention	DPP7	chr9	-	chr9:140007740-140007812				chr9:140007739-140007740;chr9:140007812-140007813		4.69	2.52	3.90	6.33	2.69	0.00	0.00	0.00	0.00	0.68	0.96	0.00	1.20	0.00	2.44	0.79	1.06	0.00	4.44	6.12	3.17	6.52	5.16	5.33	6.33	0.00	5.83	2.36	3.00	2.59	7.95	2.82	5.16	3.65	3.95	1.59	3.48	2.35	-1.14	0.992253	1.000000
K	alternative_donor	USF1	chr1	-	chr1:161011202-161011440;chr1:161011202-161011623	chr1:161011202-161011524		chr1:161011441-161011524;chr1:161011525-161011623	chr1:161011524-161011525;chr1:161011623-161011624		0.00	0.00	2.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.55	NA	3.57	NA	NA	0.00	0.00	4.76	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
K	intron_retention	EIF2B4	chr2	-	chr2:27590427-27590612				chr2:27590426-27590427;chr2:27590612-27590613		8.33	0.00	10.53	0.00	6.67	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.86	NA	16.67	0.00	0.00	0.00	9.38	6.25	NA	0.00	8.11	0.00	8.57	5.88	9.09	11.54	6.67	5.26	5.88	7.69	0.00	0.00	0.00	0.949041	1.000000
N	alternative_donor	KIAA2013,OPN3	chr1	-	chr1:11980390-11982692	chr1:11980390-11980517		chr1:11980518-11982692	chr1:11982692-11982693		4.38	2.39	7.33	1.33	1.23	0.74	1.45	1.37	0.87	2.44	1.97	2.78	2.03	1.37	2.08	5.08	1.40	2.70	1.29	3.95	1.05	6.06	3.70	11.11	1.50	2.47	2.61	2.13	2.00	3.08	7.41	5.26	1.76	4.00	5.22	4.17	1.63	3.21	1.58	0.121385	0.534451
K	intron_retention	TMUB1	chr7	-	chr7:150779681-150780520				chr7:150779680-150779681;chr7:150780520-150780521		46.67	18.75	33.33	40.00	33.33	NA	11.76	5.88	6.25	NA	NA	NA	4.00	15.38	10.71	15.79	15.38	NA	40.00	50.00	28.57	NA	38.46	NA	44.44	32.14	30.77	NA	22.73	NA	50.00	44.83	36.36	45.45	NA	46.15	27.55	39.41	11.85	0.628837	1.000000
N	alternative_acceptor	PHF5A	chr22	-	chr22:41856492-41863451	chr22:41858741-41863451		chr22:41856492-41858740	chr22:41856491-41856492		5.26	0.00	1.89	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	2.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.86	1.69	0.00	2.70	2.63	0.00	0.00	1.43	1.43	0.088059	0.586065
N	cassette	HK3	chr5	-	chr5:176314748-176315709	chr5:176314748-176315332;chr5:176315567-176315709		chr5:176315333-176315566			100.00	89.58	90.91	NA	100.00	NA	98.77	99.01	100.00	96.00	100.00	100.00	100.00	100.00	NA	100.00	97.44	100.00	100.00	96.00	100.00	NA	95.35	88.24	100.00	97.14	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.50	-0.50	0.742270	0.914636
K	intron_retention	DUS1L	chr17	-	chr17:80017970-80018576				chr17:80017969-80017970;chr17:80018576-80018577		0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	1.89	1.03	0.00	0.00	0.00	1.61	7.69	4.00	12.00	0.00	0.00	8.70	0.00	0.00	8.82	0.00	3.33	2.94	8.00	9.38	6.67	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AD	TRIAP1	chr12	-	chr12:120882759-120884028	chr12:120882759-120883768		chr12:120883769-120884028	chr12:120884028-120884029		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	2.38	NA	0.00	7.69	0.00	0.00	0.00	NA	NA	0.00	10.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	alternative_donor	STARD10	chr11	-	chr11:72470427-72492019;chr11:72470427-72491133;chr11:72470427-72492157	chr11:72470427-72492106		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		13.04	21.74	15.15	0.00	13.79	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18.52	30.77	14.29	0.00	12.00	0.00	7.69	14.29	9.52	15.38	0.00	0.00	21.43	20.59	23.53	5.26	9.52	16.67	20.13	17.86	-2.27	0.722492	0.885082
K	cassette	SMARCA4	chr19	+	chr19:11145809-11151973;chr19:11145809-11151982	chr19:11145809-11150133;chr19:11150230-11151973,chr19:11150230-11151982		chr19:11150134-11150229			0.00	0.00	6.98	8.33	3.70	0.00	5.13	13.33	8.16	7.32	7.41	11.76	5.77	9.09	6.25	4.17	6.67	8.33	0.00	4.00	6.12	10.53	4.35	23.08	0.00	18.18	6.82	7.14	4.65	8.33	5.88	3.12	7.41	4.17	4.17	6.67	2.56	7.48	4.92	0.117106	0.709176
K	jcn_only_AD	PRKCSH	chr19	+	chr19:11546528-11546861	chr19:11546532-11546861		chr19:11546528-11546531	chr19:11546527-11546528		11.39	13.33	3.51	15.38	6.38	NA	9.21	9.68	12.36	11.25	8.33	9.88	8.20	10.47	10.34	9.65	9.00	8.11	9.52	5.17	2.63	6.12	4.30	8.57	0.00	8.20	11.36	3.57	10.59	10.91	9.26	2.94	0.00	8.93	4.92	8.82	8.71	9.47	0.76	0.369893	0.657607
N	alternative_donor	TAF1D	chr11	-	chr11:93463879-93464315;chr11:93463879-93464311	chr11:93463879-93464324		chr11:93464312-93464315;chr11:93464316-93464324	chr11:93464315-93464316;chr11:93464324-93464325		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	5.56	2.70	2.27	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.582259	0.799662
K	cassette	SUMO1	chr2	-	chr2:203079158-203103162	chr2:203079158-203084754;chr2:203084830-203103162		chr2:203084755-203084829			94.52	94.29	96.35	100.00	97.50	NA	98.97	100.00	97.89	100.00	97.06	100.00	97.92	95.56	97.94	100.00	98.00	100.00	100.00	97.01	100.00	95.12	97.59	100.00	NA	96.61	100.00	100.00	100.00	97.44	98.18	92.86	100.00	98.53	97.50	97.65	98.97	96.81	-2.16	0.370613	0.709176
N	alternative_donor	LAIR1	chr19	-	chr19:54868576-54871075;chr19:54868576-54871531;chr19:54868576-54870765;chr19:54868576-54871449;chr19:54868576-54871483;chr19:54868576-54870140;chr19:54868576-54871070	chr19:54868576-54871628		chr19:54870141-54870765;chr19:54870766-54871070;chr19:54871071-54871075;chr19:54871076-54871449;chr19:54871450-54871483;chr19:54871484-54871531;chr19:54871532-54871628	chr19:54870765-54870766;chr19:54871070-54871071;chr19:54871075-54871076;chr19:54871449-54871450;chr19:54871483-54871484;chr19:54871531-54871532;chr19:54871628-54871629		96.93	98.26	95.94	100.00	100.00	100.00	100.00	99.51	99.29	100.00	99.51	100.00	99.47	98.13	97.89	99.35	98.95	100.00	100.00	94.91	98.23	98.00	97.95	100.00	100.00	97.19	97.67	100.00	99.48	100.00	98.17	97.61	100.00	98.62	97.53	98.00	100.00	97.66	-2.34	0.017592	0.264212
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4829561-4830089;chr7:4829561-4829844	chr7:4829561-4830019		chr7:4829845-4830019;chr7:4830020-4830089	chr7:4830019-4830020;chr7:4830089-4830090		21.82	9.59	12.77	10.26	12.73	12.90	4.17	0.00	0.00	7.14	0.00	7.69	3.23	0.00	3.03	0.00	4.35	NA	7.84	6.67	11.36	20.51	10.87	21.05	12.50	10.87	9.52	10.34	8.33	2.08	14.93	19.70	6.25	7.69	18.18	25.71	7.04	8.77	1.72	0.652701	0.873376
K	intron_retention		chr2	-	chr2:27587467-27587584				chr2:27587466-27587467;chr2:27587584-27587585		5.26	1.42	0.00	2.35	3.14	2.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	3.12	3.70	3.17	2.17	3.12	0.00	4.50	0.00	0.00	0.00	2.41	1.64	4.65	8.20	3.02	5.36	0.00	5.88	2.22	1.85	-0.37	0.330912	1.000000
K	jcn_only_AA	MIIP	chr1	+	chr1:12091461-12091778	chr1:12091461-12091597		chr1:12091598-12091778	chr1:12091778-12091779		0.00	8.26	0.00	0.00	3.77	1.69	3.23	5.66	6.60	5.56	7.14	6.52	7.89	5.77	5.98	4.76	0.00	5.41	2.29	6.00	2.26	0.00	4.35	7.69	0.87	6.52	2.50	0.00	0.00	6.52	4.44	0.00	1.33	5.26	0.00	6.38	2.76	5.71	2.96	0.660998	0.848430
N	cassette	TOR2A	chr9	-	chr9:130494558-130497398;chr9:130494558-130495663	chr9:130494558-130494842;chr9:130494971-130495663,chr9:130494971-130497398		chr9:130494843-130494970			100.00	100.00	85.00	NA	100.00	NA	100.00	100.00	100.00	100.00	94.12	NA	95.35	100.00	100.00	100.00	95.35	100.00	100.00	100.00	94.12	NA	88.00	NA	81.82	100.00	88.24	92.86	90.48	NA	NA	93.33	NA	100.00	93.75	100.00	100.00	100.00	0.00	0.264405	0.709176
K	intron_retention	N4BP2L1	chr13	-	chr13:32976039-32977286				chr13:32976038-32976039;chr13:32977286-32977287		86.46	92.45	87.10	71.43	72.22	69.39	91.67	92.42	86.84	89.77	NA	91.84	92.86	91.84	91.04	88.89	NA	92.39	87.50	82.54	81.16	85.25	66.67	83.70	77.46	85.93	89.55	89.47	NA	79.95	72.22	82.64	74.42	85.25	80.00	81.31	89.59	86.19	-3.39	0.696252	1.000000
N	cassette	C19orf38	chr19	+	chr19:10969020-10973845	chr19:10969020-10970590;chr19:10970635-10973845		chr19:10970591-10970634			90.53	87.27	90.32	100.00	87.50	100.00	88.89	91.53	88.00	90.32	91.89	100.00	93.10	96.23	83.33	100.00	100.00	100.00	85.29	86.76	85.25	92.86	88.46	85.71	93.10	87.95	84.51	93.33	84.21	80.77	90.62	97.22	94.00	85.19	90.91	90.70	91.00	90.58	-0.42	0.872884	0.956232
N	coord_cassette	LRCH4,RP11-44M6.7	chr7	-	chr7:100174629-100175119	chr7:100174629-100174708;chr7:100174778-100174895;chr7:100175013-100175119		chr7:100174709-100174777;chr7:100174896-100175012			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AA	SGSM3	chr22	+	chr22:40805530-40805691;chr22:40805530-40805685;chr22:40805530-40805694	chr22:40805530-40806135		chr22:40805686-40805691;chr22:40805692-40805694;chr22:40805695-40806135	chr22:40805691-40805692;chr22:40805694-40805695;chr22:40806135-40806136		3.85	1.60	0.00	12.50	3.08	17.14	2.86	NA	0.00	0.00	3.85	NA	2.63	0.00	6.67	0.00	0.00	NA	4.24	0.00	0.00	0.00	5.13	0.00	7.02	5.88	4.76	0.00	5.00	0.00	0.00	10.26	6.84	5.00	0.00	0.00	3.55	0.00	-3.55	0.183940	0.663989
N	alternative_acceptor	STAC3	chr12	-	chr12:57637991-57638097	chr12:57638009-57638097		chr12:57637991-57638008	chr12:57637990-57637991		93.88	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.37	100.00	97.01	100.00	100.00	100.00	100.00	96.47	100.00	100.00	100.00	100.00	89.83	90.91	91.18	93.75	100.00	100.00	100.00	98.23	-1.77	0.708723	0.890280
K	cassette	MAP2K2	chr19	-	chr19:4095448-4101016	chr19:4095448-4097276;chr19:4097342-4101016		chr19:4097277-4097341			92.86	91.23	83.67	82.61	94.34	96.97	92.73	100.00	96.49	95.83	95.24	98.48	97.78	97.14	97.73	97.30	98.44	94.44	93.88	84.21	93.67	95.00	96.00	94.74	100.00	88.89	89.13	100.00	91.67	95.24	100.00	95.16	91.67	85.19	93.33	95.65	93.31	95.00	1.69	0.821327	0.941649
K	jcn_only_AA	CHID1	chr11	-	chr11:870490-883147;chr11:870500-883147;chr11:874911-883147	chr11:882516-883147		chr11:870490-870499;chr11:870500-874910;chr11:874911-882515	chr11:870489-870490;chr11:870499-870500;chr11:874910-874911		0.00	0.00	0.00	0.00	0.00	0.00	6.52	0.00	5.00	3.70	5.36	0.00	10.38	0.00	5.26	7.69	8.00	8.70	0.75	0.00	0.00	0.00	1.72	0.00	0.00	NA	0.00	0.00	3.64	0.00	10.00	0.00	2.65	0.00	6.82	2.27	1.70	0.00	-1.70	0.613840	0.823876
N	alternative_donor	MINK1	chr17	+	chr17:4800109-4800498	chr17:4800368-4800498		chr17:4800109-4800367	chr17:4800108-4800109		13.95	2.67	10.45	NA	5.26	NA	0.00	0.00	0.00	0.00	1.79	0.00	2.44	0.00	2.63	0.00	1.82	NA	3.45	7.69	5.77	0.00	5.88	NA	9.52	5.00	5.97	0.00	4.92	0.00	3.70	11.69	5.13	10.34	10.71	2.63	3.06	4.35	1.29	0.649950	0.842403
N	cassette	TAF1D	chr11	-	chr11:93463614-93464315	chr11:93463614-93463842;chr11:93463879-93464315		chr11:93463843-93463878			80.00	87.50	88.64	94.81	97.30	96.46	100.00	NA	78.57	100.00	89.29	100.00	89.47	NA	91.30	94.44	90.91	100.00	93.37	79.55	83.04	95.65	94.32	92.41	88.78	100.00	91.89	95.35	96.83	97.26	77.08	80.91	75.85	93.83	86.57	93.18	89.12	79.78	-9.35	0.456889	0.756173
K	intron_retention		chr9	+	chr9:90341224-90342508				chr9:90341223-90341224;chr9:90342508-90342509		54.19	65.85	53.73	58.44	58.23	80.00	64.63	67.96	71.39	65.81	61.95	60.58	63.49	69.56	64.57	54.29	56.90	51.11	55.00	48.71	55.15	62.63	56.83	53.59	71.43	60.95	61.25	62.93	60.98	58.11	54.05	49.94	38.89	54.70	53.68	53.57	64.06	57.57	-6.49	0.940391	1.000000
K	intron_retention	CXXC1	chr18	-	chr18:47811722-47812118				chr18:47811721-47811722;chr18:47812118-47812119		5.13	0.00	13.79	NA	11.11	NA	0.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	3.12	NA	17.65	16.67	5.56	10.00	10.20	18.18	61.54	8.70	8.51	9.09	11.54	NA	6.90	10.71	6.67	12.50	7.14	23.81	3.33	6.02	2.68	0.744822	1.000000
K	cassette	SARAF	chr8	-	chr8:29927576-29940362	chr8:29927576-29931392;chr8:29931568-29940362		chr8:29931393-29931567			89.71	87.18	83.51	NA	91.18	NA	87.50	93.75	85.00	88.81	87.55	92.14	86.49	90.76	84.80	87.88	81.82	89.47	NA	91.36	84.21	100.00	81.37	92.31	NA	90.91	85.53	89.19	84.71	89.66	92.31	83.45	90.91	88.29	87.14	89.55	87.34	91.13	3.79	0.029170	0.426840
N	alternative_acceptor	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62457988-62458083;chr11:62458021-62458083	chr11:62457994-62458083		chr11:62457988-62457993;chr11:62457994-62458020	chr11:62457987-62457988;chr11:62457993-62457994		98.11	96.89	96.77	97.62	95.60	98.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	96.77	97.96	100.00	97.56	95.65	97.57	100.00	96.88	100.00	100.00	97.44	92.65	95.08	94.25	97.67	97.50	96.43	97.23	99.06	1.83	0.822867	0.939942
N	jcn_only_AA	ACP2	chr11	-	chr11:47261718-47264273;chr11:47261435-47264273;chr11:47261750-47264273;chr11:47263622-47264273	chr11:47261801-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		93.96	95.51	94.76	96.00	88.54	88.57	94.44	96.15	94.37	91.54	92.68	97.78	91.74	93.63	94.23	93.28	90.71	94.20	97.18	95.38	92.97	96.92	92.05	96.55	87.50	95.68	95.79	97.14	93.86	95.05	97.38	93.22	89.86	95.00	91.09	95.20	93.09	95.53	2.44	0.144355	0.663989
K	intron_retention	ADAMTSL4	chr1	+	chr1:150530100-150530420				chr1:150530099-150530100;chr1:150530420-150530421		12.00	0.00	45.00	NA	4.55	0.00	0.00	4.76	0.00	NA	0.00	NA	NA	3.45	6.98	NA	NA	NA	NA	20.00	18.18	NA	7.14	NA	8.33	26.67	30.77	NA	5.88	NA	NA	20.00	0.00	NA	NA	41.67	0.00	12.00	12.00	0.126382	1.000000
K	cassette	PSMD9,RP11-87C12.2	chr12	+	chr12:122326901-122340911	chr12:122326901-122332644;chr12:122332748-122340911		chr12:122332645-122332747			92.86	100.00	100.00	92.86	100.00	100.00	96.15	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	94.12	93.33	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.45	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.856376	0.951375
K	intron_retention	PLCB3	chr11	+	chr11:64032700-64032781				chr11:64032699-64032700;chr11:64032781-64032782		4.17	5.00	3.12	NA	5.88	NA	0.00	6.67	0.00	0.00	0.00	NA	0.00	4.17	0.00	0.00	0.00	NA	5.88	0.00	0.00	0.00	3.70	NA	0.00	10.53	5.26	NA	0.00	NA	NA	9.09	7.69	NA	5.00	6.67	2.50	4.17	1.67	0.952451	1.000000
K	intron_retention	CCAR2	chr8	+	chr8:22473110-22473194				chr8:22473109-22473110;chr8:22473194-22473195		8.57	0.00	9.52	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.04	0.00	0.00	0.00	9.52	0.00	2.63	0.00	0.00	1.79	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.938526	1.000000
N	alternative_donor		chr9	-	chr9:116035719-116037657;chr9:116035719-116037509;chr9:116035719-116036839	chr9:116035719-116037661		chr9:116036840-116037509;chr9:116037510-116037657;chr9:116037658-116037661	chr9:116037509-116037510;chr9:116037657-116037658;chr9:116037661-116037662		87.50	100.00	88.64	100.00	100.00	100.00	95.45	97.37	96.67	96.88	92.00	100.00	100.00	100.00	96.97	96.30	100.00	96.43	100.00	94.87	100.00	95.65	97.06	94.12	100.00	97.67	90.24	97.14	91.89	100.00	91.18	88.10	100.00	95.24	94.74	87.50	100.00	96.12	-3.88	0.067428	0.444670
N	coord_cassette	LMF2	chr22	-	chr22:50943414-50943831	chr22:50943414-50943485;chr22:50943583-50943657;chr22:50943764-50943831		chr22:50943486-50943582;chr22:50943658-50943763			97.50	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.75	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	92.00	100.00	97.67	100.00	100.00	0.00	0.468402	0.692687
K	intron_retention		chr11	-	chr11:62373453-62373534				chr11:62373452-62373453;chr11:62373534-62373535		14.29	8.51	0.00	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	20.00	10.34	16.67	0.00	0.00	6.25	7.14	3.45	NA	6.25	7.69	0.00	5.56	10.00	7.14	0.00	0.00	0.00	0.942746	1.000000
K	jcn_only_AA	RHBDD3	chr22	-	chr22:29656854-29659823	chr22:29656858-29659823		chr22:29656854-29656857	chr22:29656853-29656854		NA	30.00	42.86	NA	20.83	15.38	13.64	22.22	14.29	NA	NA	NA	13.64	35.71	16.67	16.67	23.53	NA	23.81	NA	17.86	NA	16.67	NA	0.00	16.67	21.05	NA	14.29	NA	23.08	16.00	14.29	23.53	13.33	13.64	13.96	22.65	8.68	0.182216	0.663989
N	alternative_donor	FCGR2A	chr1	+	chr1:161476451-161479609;chr1:161476498-161479609;chr1:161476382-161479609	chr1:161479530-161479609		chr1:161476382-161476450;chr1:161476451-161476497;chr1:161476498-161479529	chr1:161476381-161476382;chr1:161476450-161476451;chr1:161476497-161476498		0.38	2.50	0.73	5.56	0.00	27.27	0.00	0.11	0.00	0.38	0.00	0.66	0.00	0.15	0.00	0.24	0.00	0.49	0.00	0.57	2.99	0.49	0.72	0.67	10.00	0.27	0.16	0.66	0.00	0.63	0.00	0.23	5.56	0.50	0.00	0.74	1.25	0.21	-1.04	0.157271	0.563271
K	intron_retention	FAM65A	chr16	+	chr16:67578335-67578597				chr16:67578334-67578335;chr16:67578597-67578598		3.70	4.49	6.98	0.00	2.08	NA	0.00	2.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	4.76	6.33	0.00	6.90	3.70	10.17	9.09	3.57	0.00	10.00	5.97	6.25	0.00	3.64	2.56	2.25	3.70	1.46	0.863407	1.000000
K	alternative_last_exon	PPM1B	chr2	+	chr2:44445677-44471366;chr2:44445677-44459454	chr2:44445677-44457551	chr2:44459455-44461785	chr2:44457552-44458611			67.35	44.44	68.57	63.16	72.13	51.72	41.94	46.51	40.91	47.37	51.52	60.78	48.57	42.50	50.98	53.57	55.88	59.26	37.04	65.79	35.71	61.90	69.39	60.00	30.77	54.35	65.00	50.00	61.11	52.94	65.38	67.92	50.00	69.09	69.39	64.15	43.19	59.86	16.67	0.021332	0.204238
N	cassette	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144852444-144854517;chr1:144852500-144854517	chr1:144852444-144854164,chr1:144852500-144854164;chr1:144854212-144854517		chr1:144854165-144854211			97.92	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	98.31	90.91	100.00	100.00	100.00	92.31	97.14	81.82	95.24	96.25	92.41	100.00	99.28	NA	92.66	93.37	95.45	100.00	96.12	91.51	89.10	88.24	91.60	88.57	92.88	89.57	96.58	7.01	0.215210	0.709176
K	intron_retention		chr19	+	chr19:36036719-36036789				chr19:36036718-36036719;chr19:36036789-36036790		0.00	1.16	6.82	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.76	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	2.56	3.80	0.00	0.00	3.57	2.78	1.69	2.60	1.94	0.38	0.00	-0.38	0.811950	1.000000
K	intron_retention	HSPE1	chr2	+	chr2:198367853-198367932				chr2:198367852-198367853;chr2:198367932-198367933		3.57	0.00	3.03	1.63	2.65	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.37	4.17	1.85	2.54	1.53	2.78	0.00	0.00	0.00	0.00	2.22	0.00	14.29	12.00	4.18	1.75	2.01	0.00	0.00	1.78	1.78	0.558279	1.000000
K	intron_retention	SLC25A39	chr17	-	chr17:42398100-42398425				chr17:42398099-42398100;chr17:42398425-42398426		13.16	9.86	14.63	4.76	10.09	3.23	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	4.88	1.01	0.00	0.00	1.85	0.00	6.32	3.57	8.82	0.00	0.00	0.00	4.08	3.23	5.97	0.00	20.00	21.21	9.18	7.27	9.57	5.06	0.93	0.00	-0.93	0.863963	1.000000
K	cassette	COX14	chr12	+	chr12:50506085-50513818	chr12:50506085-50512275;chr12:50512336-50513818		chr12:50512276-50512335			4.35	10.61	3.70	10.64	15.24	9.30	1.92	0.00	5.63	4.76	3.30	2.86	5.97	4.76	11.83	8.89	9.47	6.52	4.17	0.00	5.41	5.26	6.60	2.63	2.20	0.00	6.12	7.14	10.68	9.80	6.98	6.76	4.55	12.24	8.06	12.00	4.36	2.17	-2.18	0.246550	0.709176
N	coord_cassette	NUDC	chr1	+	chr1:27268310-27271880	chr1:27268310-27269150;chr1:27269268-27269361;chr1:27269557-27271880		chr1:27269151-27269267;chr1:27269362-27269556			100.00	98.81	98.15	94.44	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.72	100.00	100.00	100.00	100.00	100.00	97.50	100.00	98.92	100.00	98.82	100.00	100.00	100.00	100.00	100.00	96.59	100.00	100.00	98.21	96.90	100.00	98.31	100.00	98.77	100.00	1.23	0.048553	0.643829
K	alternative_acceptor	BNIP3	chr10	-	chr10:133782074-133784141	chr10:133783516-133784141		chr10:133782074-133783515	chr10:133782073-133782074		7.51	5.88	11.66	8.00	3.45	4.00	2.38	1.28	1.59	5.26	4.55	4.55	1.92	1.83	2.39	3.70	4.55	0.00	2.17	7.06	2.54	5.00	9.68	12.50	2.50	9.26	5.22	7.14	4.35	9.62	10.17	10.59	1.49	10.00	9.62	20.37	2.27	7.29	5.01	0.078279	0.585944
K	alternative_acceptor	RIC8A	chr11	+	chr11:213419-214287;chr11:213419-214205	chr11:213419-214229		chr11:214206-214229;chr11:214230-214287	chr11:214229-214230;chr11:214287-214288		94.74	96.30	93.33	91.67	98.11	92.86	94.00	92.31	92.11	87.50	97.92	100.00	93.62	91.89	100.00	90.24	100.00	100.00	100.00	91.07	88.64	86.49	91.53	100.00	100.00	93.62	87.10	90.91	94.92	90.32	90.91	85.51	83.33	92.50	93.88	87.93	95.15	92.10	-3.05	0.446334	0.754532
K	alternative_last_exon	SYS1,SYS1-DBNDD2	chr20	+	chr20:43994327-44010530;chr20:43994327-44028329;chr20:43994327-43995514;chr20:43994327-44037099	chr20:43994327-44002933	chr20:44028330-44028391;chr20:43995515-43997855;chr20:44037100-44037246	chr20:44002934-44005438			3.33	8.33	4.55	5.00	3.03	2.94	2.27	0.00	2.13	2.63	2.08	4.00	3.33	4.00	2.86	2.38	3.03	4.17	4.76	5.88	2.86	6.67	3.45	0.00	4.17	0.00	5.13	5.56	3.12	0.00	5.00	3.45	6.06	4.00	3.45	3.03	4.46	3.67	-0.80	0.215160	0.437375
N	cassette	NCF1B	chr7	+	chr7:72637992-72641443	chr7:72637992-72639920;chr7:72640087-72641443		chr7:72639921-72640086			96.75	100.00	95.59	NA	94.74	100.00	100.00	99.79	98.61	100.00	97.78	96.61	100.00	99.60	99.45	100.00	98.21	100.00	95.16	97.23	94.00	100.00	98.68	94.74	100.00	99.29	98.08	100.00	100.00	98.88	97.41	97.17	96.15	100.00	96.43	93.75	100.00	98.35	-1.65	0.852675	0.950337
N	alternative_acceptor	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2419918;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2420049		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		0.00	0.00	0.00	3.74	3.31	3.42	3.70	NA	11.76	5.00	7.41	10.00	7.41	0.00	0.00	3.62	3.45	8.70	3.03	5.00	4.17	2.97	1.85	0.00	1.51	NA	0.00	6.25	5.10	2.25	0.00	0.00	4.51	2.74	1.27	1.56	3.37	0.00	-3.37	0.237943	0.692777
N	cassette	TPD52L2	chr20	+	chr20:62505170-62520542;chr20:62505170-62514071;chr20:62505170-62514102	chr20:62505170-62507168;chr20:62507229-62520542,chr20:62507229-62514071,chr20:62507229-62514102		chr20:62507169-62507228			79.08	86.84	80.54	91.30	88.24	87.50	79.23	84.03	80.21	81.08	86.64	82.93	79.90	86.36	78.82	89.20	79.48	94.29	83.78	79.31	82.76	87.10	87.59	89.83	79.63	88.73	85.42	90.79	89.47	92.86	87.74	83.90	78.72	91.57	87.64	91.26	79.77	85.19	5.43	0.217643	0.709176
N	alternative_donor	ATXN2L	chr16	+	chr16:28847444-28847769	chr16:28847498-28847769		chr16:28847444-28847497	chr16:28847443-28847444		88.00	100.00	92.86	NA	92.86	NA	78.57	85.71	76.47	50.00	47.37	40.00	66.67	80.00	80.00	58.82	35.71	NA	NA	78.57	84.62	80.00	90.48	80.00	NA	88.89	100.00	NA	85.71	NA	100.00	90.62	100.00	92.31	93.33	77.78	89.28	86.85	-2.43	0.953343	0.984606
K	intron_retention	ACP2	chr11	-	chr11:47266419-47266855				chr11:47266418-47266419;chr11:47266855-47266856		5.88	10.00	8.44	7.14	5.13	NA	1.41	1.81	0.83	2.04	1.52	0.00	2.02	2.65	2.63	2.80	2.47	2.99	9.09	6.67	3.12	7.32	6.73	1.75	0.00	5.76	6.86	8.51	5.62	3.64	4.07	4.42	9.09	9.52	9.00	5.93	5.55	4.92	-0.64	0.719136	1.000000
N	jcn_only_AA	GGT1,SNRPD3	chr22	+	chr22:50960039-50960173	chr22:50960039-50960169		chr22:50960170-50960173	chr22:50960173-50960174		91.89	93.90	100.00	96.30	98.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	94.74	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.00	97.73	94.34	96.77	94.74	100.00	97.37	96.43	-0.94	0.632800	0.838192
N	alternative_acceptor	TRPM2	chr21	+	chr21:45844823-45845552	chr21:45844823-45845196		chr21:45845197-45845552	chr21:45845552-45845553		0.00	1.03	2.22	6.25	3.70	NA	0.00	0.00	NA	0.00	0.00	NA	2.94	0.00	NA	0.00	0.00	NA	1.59	0.00	0.00	0.00	0.00	0.00	1.92	4.35	0.00	11.11	0.00	0.00	3.45	0.00	1.52	4.08	2.86	3.17	1.56	0.00	-1.56	0.834030	0.940678
K	cassette	FUS	chr16	+	chr16:31196501-31199645	chr16:31196501-31198122;chr16:31198158-31199645		chr16:31198123-31198157			87.88	77.78	77.50	96.81	94.16	100.00	98.53	98.64	96.30	98.87	99.56	100.00	97.63	98.78	94.57	98.71	99.27	99.59	85.00	85.12	89.71	94.70	94.68	96.91	58.33	94.50	83.18	99.22	97.59	98.39	75.00	58.51	78.12	91.54	95.14	93.29	81.56	91.19	9.63	0.329872	0.709176
K	cassette	PREB	chr2	-	chr2:27354377-27354877	chr2:27354377-27354539;chr2:27354700-27354877		chr2:27354540-27354699			88.24	81.82	81.40	80.00	86.67	76.92	100.00	92.59	100.00	100.00	100.00	100.00	94.34	100.00	93.55	94.59	93.75	100.00	80.95	85.19	90.91	85.71	68.97	90.91	NA	100.00	91.43	95.24	87.50	93.10	78.95	76.19	86.36	83.87	81.58	92.31	86.36	90.41	4.05	0.681730	0.883836
N	jcn_only_AD	PNPLA6	chr19	+	chr19:7621969-7623735;chr19:7623614-7623735	chr19:7622171-7623735		chr19:7621969-7622170;chr19:7622171-7623613	chr19:7621968-7621969;chr19:7622170-7622171		100.00	94.12	98.20	100.00	100.00	100.00	98.80	97.06	96.67	100.00	100.00	100.00	98.96	100.00	100.00	96.67	95.16	100.00	100.00	99.11	99.12	100.00	96.77	100.00	100.00	98.95	100.00	100.00	100.00	100.00	100.00	98.98	98.08	100.00	100.00	100.00	98.88	99.56	0.68	0.420315	0.681153
N	jcn_only_AA	HNRNPUL1	chr19	+	chr19:41810167-41811580;chr19:41810167-41811532;chr19:41810167-41811550	chr19:41810167-41811736		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		9.52	32.26	7.69	NA	13.51	NA	0.00	10.09	6.73	9.01	8.38	6.56	6.21	0.00	0.00	8.64	5.71	0.00	28.57	0.00	16.67	3.23	0.00	0.00	NA	8.96	0.00	0.00	8.97	4.00	8.20	9.57	35.71	0.00	0.00	6.49	28.57	8.58	-19.99	0.119124	0.663989
K	cassette	SPINT2	chr19	+	chr19:38755639-38778515	chr19:38755639-38774266;chr19:38774438-38778515		chr19:38774267-38774437			97.79	93.85	97.34	100.00	98.00	100.00	95.45	97.78	98.04	100.00	94.87	100.00	100.00	100.00	96.77	95.24	100.00	100.00	100.00	94.67	95.52	94.59	100.00	96.15	100.00	97.33	97.24	100.00	100.00	100.00	94.74	96.18	95.35	100.00	98.57	98.31	97.72	97.56	-0.17	0.791830	0.936947
K	alternative_donor	ALS2CL,C3orf62	chr3	-	chr3:49311574-49314008	chr3:49311574-49313859		chr3:49313860-49314008	chr3:49314008-49314009		94.44	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	94.44	NA	100.00	NA	NA	NA	93.10	NA	100.00	100.00	92.31	NA	92.86	NA	NA	100.00	100.00	NA	100.00	NA	100.00	92.59	91.67	93.75	100.00	NA	100.00	100.00	0.00	0.792700	0.924933
N	jcn_only_AA		chr2	+	chr2:26257605-26321536;chr2:26257605-26316459;chr2:26257605-26270005	chr2:26257605-26321530		chr2:26270006-26316459;chr2:26316460-26321530;chr2:26321531-26321536	chr2:26316459-26316460;chr2:26321530-26321531;chr2:26321536-26321537		98.50	100.00	100.00	75.86	87.04	31.58	99.17	100.00	98.81	96.58	97.46	96.36	100.00	98.85	99.16	93.81	97.41	97.32	91.67	100.00	100.00	96.80	97.44	96.40	NA	98.95	98.64	96.00	100.00	95.00	98.23	100.00	100.00	97.88	97.38	100.00	100.00	98.90	-1.10	0.607183	0.819384
K	intron_retention	TFIP11	chr22	-	chr22:26888335-26890104				chr22:26888334-26888335;chr22:26890104-26890105		4.48	9.32	9.30	8.62	7.14	2.82	16.13	0.00	8.11	5.36	7.27	0.00	12.50	0.00	8.11	10.00	8.96	0.00	16.42	5.88	3.53	12.50	11.11	7.69	8.05	0.00	7.14	6.90	6.38	2.04	2.82	6.98	10.53	7.55	13.46	10.53	11.52	1.41	-10.11	0.084734	1.000000
N	alternative_acceptor	SCYL1	chr11	+	chr11:65303806-65304056;chr11:65303806-65304154;chr11:65303806-65304188	chr11:65303806-65304061		chr11:65304057-65304061;chr11:65304062-65304154;chr11:65304155-65304188	chr11:65304061-65304062;chr11:65304154-65304155;chr11:65304188-65304189		0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	9.09	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	ALYREF	chr17	-	chr17:79846022-79846116				chr17:79846021-79846022;chr17:79846116-79846117		2.94	1.00	1.18	0.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	2.60	0.00	0.00	0.00	1.47	0.00	0.00	0.00	0.00	0.00	8.91	6.38	6.28	0.82	0.96	0.78	1.23	0.00	-1.23	0.996714	1.000000
N	jcn_only_AA	ABR	chr17	-	chr17:936696-953289;chr17:948891-953289;chr17:936518-953289	chr17:916405-953289		chr17:916405-936517;chr17:936518-936695;chr17:936696-948890	chr17:916404-916405;chr17:936517-936518;chr17:936695-936696		100.00	100.00	100.00	NA	84.62	NA	100.00	99.13	100.00	99.38	98.92	97.87	98.20	100.00	100.00	100.00	99.25	99.32	NA	100.00	NA	96.23	95.69	98.79	100.00	100.00	100.00	100.00	96.00	90.70	100.00	100.00	NA	100.00	96.77	99.25	100.00	100.00	0.00	0.557326	0.789398
N	alternative_acceptor		chr22	+	chr22:50355017-50355302	chr22:50355017-50355089		chr22:50355090-50355302	chr22:50355302-50355303		100.00	100.00	98.38	100.00	100.00	100.00	100.00	100.00	98.89	99.15	93.62	99.75	100.00	98.34	98.68	98.95	97.30	98.62	NA	100.00	100.00	99.03	98.10	99.00	NA	100.00	99.01	100.00	100.00	98.93	100.00	99.56	100.00	100.00	100.00	99.38	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor	PPM1M	chr3	+	chr3:52283339-52283660;chr3:52283339-52283671	chr3:52283339-52283685		chr3:52283661-52283671;chr3:52283672-52283685	chr3:52283671-52283672;chr3:52283685-52283686		76.60	82.35	73.58	NA	85.53	NA	95.76	90.24	95.65	95.00	91.43	100.00	95.41	88.00	86.96	88.24	92.96	NA	72.22	84.00	80.77	75.00	75.58	NA	72.73	80.77	76.92	88.89	80.58	NA	83.33	82.05	82.61	91.67	75.00	NA	82.48	83.66	1.19	0.949038	0.989331
K	intron_retention	NDUFS3	chr11	+	chr11:47600711-47600820				chr11:47600710-47600711;chr11:47600820-47600821		0.00	1.16	14.29	6.67	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.53	6.06	0.00	2.86	NA	0.00	0.00	7.41	0.00	0.00	0.00	13.04	9.09	6.06	11.11	3.12	7.14	0.00	0.00	0.00	0.591309	1.000000
N	jcn_only_AD	IFITM10	chr11	-	chr11:1756660-1763353;chr11:1756660-1768986;chr11:1756660-1775032	chr11:1756660-1768896					92.78	89.58	92.31	89.19	92.18	91.30	92.86	96.77	90.32	95.00	93.10	85.42	90.91	100.00	NA	88.57	89.80	95.00	88.34	92.16	91.51	90.77	93.49	92.44	92.23	96.67	93.59	92.50	93.06	94.59	90.37	90.34	85.38	88.64	91.11	91.80	90.25	94.72	4.48	0.025821	0.367259
N	alternative_acceptor	TNFAIP2	chr14	+	chr14:103598100-103599052;chr14:103598100-103599038;chr14:103598100-103598983	chr14:103598100-103599086		chr14:103598984-103599038;chr14:103599039-103599052;chr14:103599053-103599086	chr14:103599038-103599039;chr14:103599052-103599053;chr14:103599086-103599087		96.70	97.22	97.61	100.00	100.00	100.00	100.00	99.17	98.91	99.20	99.12	99.53	98.84	99.05	98.03	99.28	99.47	99.34	100.00	98.01	100.00	97.30	97.08	96.77	100.00	96.54	97.91	96.55	99.03	97.29	97.97	97.63	90.00	96.42	96.82	96.34	99.42	97.99	-1.43	0.894645	0.963205
K	intron_retention	MIIP	chr1	+	chr1:12089952-12090084				chr1:12089951-12089952;chr1:12090084-12090085		9.76	6.76	16.67	10.53	13.64	5.19	3.23	0.00	2.44	4.55	0.00	0.00	2.78	2.04	5.62	0.00	0.00	0.00	7.14	3.12	7.32	NA	10.71	23.08	5.32	5.88	9.52	8.33	4.17	8.54	8.57	11.11	8.11	NA	7.14	8.11	6.04	4.50	-1.54	0.949970	1.000000
K	jcn_only_AD	PSTPIP1	chr15	+	chr15:77287951-77310488	chr15:77308337-77310488		chr15:77287951-77308336	chr15:77287950-77287951		0.00	0.00	0.00	NA	0.00	NA	6.12	0.00	0.00	NA	6.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	2.63	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr11	+	chr11:117864865-117866303				chr11:117864864-117864865;chr11:117866303-117866304		2.13	0.00	2.17	NA	0.00	NA	0.00	0.54	0.19	0.00	0.00	0.08	1.83	0.17	0.56	0.32	0.00	0.18	NA	1.35	0.00	0.00	2.94	1.81	44.00	1.35	2.26	0.00	1.89	0.90	2.04	2.93	NA	2.98	2.68	1.89	0.92	1.35	0.44	0.702240	1.000000
K	cassette	PARL	chr3	-	chr3:183551378-183558357	chr3:183551378-183551511;chr3:183551614-183558357		chr3:183551512-183551613			95.12	89.34	91.94	78.72	88.24	95.74	92.68	NA	86.36	82.50	84.42	88.89	90.00	NA	91.67	70.00	76.29	84.62	93.97	88.89	87.14	93.10	89.13	90.32	92.73	100.00	92.65	83.33	83.16	85.00	100.00	95.74	89.83	91.67	89.29	91.84	91.34	97.56	6.22	0.180502	0.709176
K	cassette	CD33	chr19	+	chr19:51728412-51729058	chr19:51728412-51728473;chr19:51728855-51729058		chr19:51728474-51728854			59.38	61.11	70.49	NA	75.00	NA	81.60	80.00	73.08	76.67	82.05	79.10	64.21	NA	53.85	60.00	59.05	65.71	25.00	22.22	50.00	23.08	36.84	37.50	NA	61.11	56.94	63.64	58.06	66.67	45.45	70.83	80.00	80.00	71.11	73.68	64.21	59.38	-4.83	0.549355	0.819124
N	jcn_only_AD	FGD2	chr6	+	chr6:36985433-36988316;chr6:36983637-36988316;chr6:36985398-36988316	chr6:36983604-36988316		chr6:36983604-36983636;chr6:36983637-36985397;chr6:36985398-36985432	chr6:36983603-36983604;chr6:36983636-36983637;chr6:36985397-36985398		0.00	0.00	NA	NA	NA	NA	0.00	1.31	3.70	NA	0.00	0.00	2.00	0.00	0.00	7.14	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.631893	0.817497
N	jcn_only_AD	RPL15	chr3	+	chr3:23958936-23959340;chr3:23958665-23959340;chr3:23958787-23959340	chr3:23958731-23959340		chr3:23958665-23958730;chr3:23958731-23958786;chr3:23958787-23958935	chr3:23958664-23958665;chr3:23958730-23958731;chr3:23958786-23958787		19.00	8.75	18.13	8.86	8.97	3.57	14.55	15.15	17.96	7.63	8.10	9.50	11.85	21.15	15.11	10.87	7.38	9.51	10.42	14.44	10.00	10.00	8.20	10.29	0.00	18.84	15.52	7.74	9.62	10.34	17.59	12.99	5.62	12.34	16.07	11.59	9.59	18.21	8.63	0.005324	0.182851
K	jcn_only_AA	EWSR1	chr22	+	chr22:29684776-29687553	chr22:29684776-29687550		chr22:29687551-29687553	chr22:29687553-29687554		41.67	37.50	50.98	54.17	41.30	46.15	35.56	42.86	52.50	42.62	41.54	47.37	41.94	47.06	42.86	57.41	49.44	54.29	27.27	38.67	52.63	36.00	45.07	35.00	NA	40.74	40.43	48.15	50.00	48.04	37.70	36.00	47.37	40.74	51.06	48.72	37.50	41.20	3.70	0.372524	0.663989
N	alternative_donor	ZNF710	chr15	+	chr15:90617915-90622891;chr15:90617523-90622891	chr15:90619479-90622891		chr15:90617523-90617914;chr15:90617915-90619478	chr15:90617522-90617523;chr15:90617914-90617915		10.00	35.00	16.98	NA	53.85	NA	6.78	1.61	4.35	2.38	5.80	1.64	8.47	1.82	2.13	2.38	4.05	2.08	NA	7.50	NA	NA	24.14	7.69	50.00	6.67	15.56	8.33	28.57	NA	8.33	7.14	60.00	15.38	9.38	7.32	35.00	7.08	-27.91	0.071723	0.454952
K	intron_retention		chr12	-	chr12:57496705-57498246				chr12:57496704-57496705;chr12:57498246-57498247		6.32	12.50	6.25	NA	20.00	27.27	0.78	1.23	1.35	1.28	2.68	1.22	0.70	2.02	3.80	2.11	4.42	1.96	43.75	5.32	17.65	5.00	5.32	5.19	38.46	3.82	6.12	7.32	5.77	4.35	11.11	8.11	47.62	8.96	7.94	7.59	25.48	4.57	-20.91	0.234202	1.000000
K	intron_retention	DENND3	chr8	+	chr8:142202763-142204131				chr8:142202762-142202763;chr8:142204131-142204132		6.00	2.04	11.93	2.86	6.67	4.12	0.00	3.12	0.00	NA	0.00	0.00	0.00	0.00	5.00	NA	0.00	0.00	6.25	8.11	1.85	NA	11.11	10.00	0.00	6.82	13.10	10.53	NA	3.12	10.00	13.21	5.33	17.65	27.27	10.57	1.02	6.41	5.39	0.469019	1.000000
N	jcn_only_AD		chr6	-	chr6:33262540-33262772	chr6:33262540-33262753		chr6:33262754-33262772	chr6:33262772-33262773		97.87	91.84	98.41	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	94.74	94.12	100.00	91.67	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	96.23	96.30	96.77	94.92	95.65	100.00	100.00	0.00	0.659552	0.824391
K	jcn_only_AA	CNBP	chr3	-	chr3:128890124-128890288;chr3:128890153-128890288;chr3:128890127-128890288	chr3:128890121-128890288		chr3:128890121-128890123;chr3:128890124-128890126;chr3:128890127-128890152	chr3:128890120-128890121;chr3:128890123-128890124;chr3:128890126-128890127		69.77	81.01	68.64	61.54	61.29	NA	74.93	73.76	73.42	71.93	68.63	72.62	71.60	73.03	74.11	70.07	71.46	72.04	63.16	70.34	69.62	75.14	63.73	66.25	NA	69.63	72.30	77.87	71.82	67.95	65.00	70.47	69.57	65.69	67.87	65.84	71.60	70.06	-1.54	0.597411	0.813092
N	alternative_donor		chr16	-	chr16:1503896-1504415	chr16:1503896-1504411		chr16:1504412-1504415	chr16:1504415-1504416		94.44	100.00	93.18	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	94.44	NA	100.00	100.00	93.33	100.00	100.00	96.67	100.00	100.00	NA	100.00	95.45	NA	92.00	100.00	87.88	100.00	100.00	0.00	0.174688	0.563271
K	intron_retention	CXXC1	chr18	-	chr18:47809732-47809884				chr18:47809731-47809732;chr18:47809884-47809885		5.08	12.00	15.49	5.00	10.45	11.11	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	4.55	NA	12.70	10.26	10.77	20.00	14.29	8.33	17.24	4.88	13.73	0.00	7.14	10.00	17.86	17.44	9.09	12.00	15.15	17.86	10.54	4.98	-5.56	0.854206	1.000000
N	jcn_only_AD	MICAL1	chr6	-	chr6:109767616-109767898;chr6:109767616-109767885	chr6:109767616-109767881		chr6:109767882-109767885;chr6:109767886-109767898	chr6:109767885-109767886;chr6:109767898-109767899		0.00	0.00	6.38	10.53	11.32	NA	0.00	4.62	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.85	3.66	0.00	2.74	9.52	0.00	0.00	0.00	8.57	4.49	4.55	4.41	5.36	7.55	5.17	6.78	9.43	0.00	2.21	2.21	0.449133	0.706163
N	jcn_only_AA	BCKDK	chr16	+	chr16:31123349-31123441;chr16:31123349-31123502	chr16:31123349-31123517		chr16:31123442-31123502;chr16:31123503-31123517	chr16:31123502-31123503;chr16:31123517-31123518		7.41	11.94	2.27	6.82	13.56	11.90	0.00	0.00	3.92	5.26	2.86	6.67	0.00	2.27	6.25	0.00	7.69	9.09	3.49	7.32	8.85	13.33	11.36	0.00	6.45	0.00	4.35	8.11	6.78	11.11	0.00	6.38	10.45	9.09	10.00	15.79	4.97	1.14	-3.84	0.344600	0.663989
N	jcn_only_AD	GMIP	chr19	-	chr19:19747839-19748173	chr19:19747839-19748091		chr19:19748092-19748173	chr19:19748173-19748174		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	AP3S1	chr5	+	chr5:115205826-115249058;chr5:115205826-115238581	chr5:115205826-115230783;chr5:115230856-115249058,chr5:115230856-115238581		chr5:115230784-115230855			87.65	100.00	88.61	100.00	100.00	NA	94.96	92.41	94.55	96.03	96.43	96.19	94.74	95.00	92.00	100.00	98.47	95.74	100.00	82.54	88.24	95.52	97.94	95.29	NA	90.32	97.78	96.23	96.88	89.13	83.33	97.83	100.00	93.14	100.00	95.65	100.00	88.98	-11.02	0.004257	0.236885
N	jcn_only_AA	BET1L	chr11	-	chr11:201777-205610;chr11:201226-205610;chr11:201742-205610	chr11:205470-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		81.82	50.00	93.33	71.43	70.00	81.48	97.22	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	81.82	66.67	82.35	84.00	80.00	73.68	100.00	100.00	86.36	85.71	100.00	94.12	93.75	76.92	100.00	36.00	81.25	92.00	100.00	81.94	84.35	2.41	0.344755	0.663989
N	alternative_acceptor	TBC1D15	chr12	+	chr12:72312329-72314510	chr12:72312329-72314492		chr12:72314493-72314510	chr12:72314510-72314511		0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.23	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	5.88	4.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.179593	0.660713
N	alternative_acceptor	SFT2D2	chr1	+	chr1:168206009-168208368;chr1:168206009-168206451	chr1:168206009-168207167		chr1:168206452-168207167;chr1:168207168-168208368	chr1:168207167-168207168;chr1:168208368-168208369		4.76	2.08	3.85	7.14	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	8.33	5.00	2.27	0.00	1.85	5.00	0.00	0.00	0.90	3.45	4.00	0.00	4.35	5.00	6.06	0.00	2.59	2.59	0.068411	0.584083
N	jcn_only_AA	HNMT	chr2	+	chr2:138762796-138764600;chr2:138762796-138771344;chr2:138762796-138771348	chr2:138762796-138763324		chr2:138763325-138764600;chr2:138764601-138771344;chr2:138771345-138771348	chr2:138764600-138764601;chr2:138771344-138771345;chr2:138771348-138771349		0.00	0.00	0.00	NA	0.00	NA	1.12	1.52	1.47	0.00	1.01	0.00	0.00	0.00	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.19	0.00	0.00	0.00	0.00	0.932775	0.977987
K	jcn_only_AA	CTBP1	chr4	-	chr4:1206212-1206700	chr4:1206215-1206700		chr4:1206212-1206214	chr4:1206211-1206212		42.86	39.02	30.43	30.43	32.00	NA	26.92	30.00	32.26	25.00	36.00	30.00	29.82	36.00	47.37	35.14	37.29	20.00	45.71	36.36	31.25	25.00	28.87	28.57	19.23	33.33	43.90	32.50	31.25	35.29	35.00	37.14	32.26	33.33	46.43	44.00	31.04	35.50	4.46	0.437408	0.704827
K	jcn_only_AA	AD000671.6,IGFLR1	chr19	-	chr19:36230988-36231280;chr19:36230990-36231280	chr19:36230671-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		7.14	16.28	13.64	NA	12.50	NA	0.00	0.00	5.88	0.00	0.00	4.17	3.39	6.25	0.00	5.88	4.76	0.00	30.43	21.74	15.00	10.00	13.89	6.67	15.15	4.35	4.76	11.11	0.00	7.69	11.54	10.26	22.50	16.67	16.67	17.24	15.71	6.70	-9.02	0.302730	0.663989
N	jcn_only_AA	SMCHD1	chr18	+	chr18:2796520-2800520;chr18:2796520-2802525	chr18:2796520-2799278		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		2.90	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.00	NA	2.44	NA	0.00	0.00	0.00	NA	1.11	0.00	0.00	0.00	0.00	6.38	2.99	0.00	0.00	10.00	0.00	0.00	2.67	2.67	0.029609	0.637417
N	cassette	LAIR1	chr19	-	chr19:54868576-54872522;chr19:54868576-54872616	chr19:54868576-54871628;chr19:54871680-54872616,chr19:54871680-54872522		chr19:54871629-54871679			98.76	97.89	98.49	100.00	98.63	100.00	100.00	99.71	99.56	99.08	99.40	100.00	68.84	71.67	68.14	73.45	67.48	82.76	73.33	72.21	74.83	75.00	68.25	79.49	100.00	99.00	99.28	100.00	99.42	100.00	99.02	97.88	96.77	98.45	99.53	99.46	97.33	98.88	1.55	0.944070	0.985246
N	alternative_donor	EEF1D	chr8	-	chr8:144663325-144663410;chr8:144663325-144663404;chr8:144663325-144663398	chr8:144663325-144663455		chr8:144663399-144663404;chr8:144663405-144663410;chr8:144663411-144663455	chr8:144663404-144663405;chr8:144663410-144663411;chr8:144663455-144663456		6.12	5.04	5.00	2.17	2.90	2.82	8.93	4.17	8.33	10.81	6.12	0.00	5.41	14.71	2.08	1.56	10.00	8.33	4.63	5.26	8.16	4.17	5.32	4.44	5.34	0.00	8.70	5.77	3.41	4.48	8.62	10.98	7.52	3.33	1.89	2.17	5.38	5.69	0.31	0.879832	0.969920
K	cassette	CCM2	chr7	+	chr7:45109561-45112324	chr7:45109561-45111348;chr7:45111472-45112324		chr7:45111349-45111471			2.22	1.42	1.78	2.27	2.11	0.97	2.00	3.91	3.45	2.15	1.27	5.56	3.12	3.48	3.00	3.03	2.56	3.17	1.35	3.64	1.36	1.49	1.06	2.75	0.00	3.92	2.08	1.09	1.56	2.36	1.79	2.28	1.23	2.86	2.04	2.69	1.39	3.56	2.17	0.015443	0.369835
K	jcn_only_AA	CTNNB1	chr3	+	chr3:41280846-41281309	chr3:41280846-41281150		chr3:41281151-41281309	chr3:41281309-41281310		48.78	40.91	53.19	21.92	36.88	21.43	34.78	46.89	52.48	42.47	43.54	38.62	40.00	47.95	57.79	34.97	35.53	40.00	35.71	46.55	44.44	32.10	28.66	21.93	65.38	34.68	46.67	28.93	26.82	21.66	44.78	50.00	30.77	27.31	32.77	31.87	37.86	46.72	8.86	0.524503	0.765788
K	intron_retention	NDUFS2	chr1	+	chr1:161183712-161183945				chr1:161183711-161183712;chr1:161183945-161183946		9.57	14.75	11.11	8.62	9.68	6.80	0.00	0.00	3.01	0.00	2.11	0.00	0.87	1.61	2.40	0.00	1.67	0.00	7.43	6.85	5.94	12.50	10.11	13.33	3.70	10.00	9.35	7.50	6.60	7.79	10.00	8.44	6.47	10.17	10.26	11.58	5.08	8.21	3.13	0.992397	1.000000
N	alternative_donor	DENND4B,SFPQ	chr1	-	chr1:35643638-35652601;chr1:35643638-35652547;chr1:35643638-35646735	chr1:35643638-35644265		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		20.00	4.20	24.24	9.09	14.29	7.64	25.00	23.08	13.33	33.33	33.33	35.14	29.63	17.65	15.38	27.69	31.11	33.33	2.61	15.38	8.77	27.27	28.05	37.50	1.55	16.67	14.00	22.22	23.81	22.99	6.98	13.41	1.33	36.26	37.14	31.07	3.41	17.16	13.75	0.339633	0.650093
N	alternative_acceptor		chr9	+	chr9:140136474-140136952;chr9:140136474-140136931	chr9:140136474-140136947		chr9:140136932-140136947;chr9:140136948-140136952	chr9:140136947-140136948;chr9:140136952-140136953		93.26	96.88	95.59	96.88	98.18	95.83	100.00	100.00	98.67	99.24	99.32	98.75	99.44	100.00	98.96	99.18	100.00	98.55	93.75	96.84	94.00	94.67	99.15	97.40	NA	98.51	98.31	100.00	98.46	94.87	87.88	87.25	89.74	95.65	96.55	97.32	96.88	97.68	0.80	0.965857	0.991031
N	alternative_acceptor		chr2	+	chr2:46803796-46807747;chr2:46803796-46808070;chr2:46803796-46807695;chr2:46803796-46827732;chr2:46803796-46803887	chr2:46803796-46808066		chr2:46803888-46807695;chr2:46807696-46807747;chr2:46807748-46808066;chr2:46808067-46808070;chr2:46808071-46827732	chr2:46807695-46807696;chr2:46807747-46807748;chr2:46808066-46808067;chr2:46808070-46808071;chr2:46827732-46827733		92.31	100.00	92.00	NA	100.00	60.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	95.00	100.00	100.00	100.00	66.67	90.91	100.00	100.00	95.00	90.00	NA	92.31	95.00	100.00	100.00	90.00	NA	93.75	63.64	94.44	95.24	93.75	100.00	92.31	-7.69	0.355892	0.709013
K	jcn_only_AA	DNM2	chr19	+	chr19:10941055-10943667;chr19:10941055-10942979;chr19:10941055-10941653	chr19:10941055-10941656		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		19.22	22.73	14.91	20.45	22.22	10.53	28.30	18.69	23.46	26.79	20.54	20.59	18.92	21.80	21.43	24.00	21.97	25.00	13.51	14.74	14.63	16.67	12.34	9.62	21.31	19.83	19.75	18.31	16.48	10.53	15.50	16.09	14.61	15.09	17.39	16.55	20.12	18.95	-1.16	0.540689	0.778326
N	jcn_only_AA	DERL2	chr17	-	chr17:5384463-5384615;chr17:5384460-5384615	chr17:5383903-5384615					97.56	93.94	98.39	100.00	100.00	NA	95.83	97.30	100.00	96.15	100.00	100.00	95.24	96.55	95.56	100.00	94.87	100.00	90.00	100.00	100.00	96.43	97.44	100.00	NA	100.00	100.00	91.67	94.74	91.18	100.00	95.74	NA	97.62	95.12	95.83	94.59	98.78	4.19	0.025400	0.621886
K	intron_retention	STARD3	chr17	+	chr17:37815807-37816463				chr17:37815806-37815807;chr17:37816463-37816464		6.76	10.34	8.43	7.14	6.90	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.15	1.82	2.86	1.89	1.75	0.00	3.57	4.29	3.64	8.00	6.35	6.52	7.14	8.93	8.64	5.41	5.56	8.70	7.69	7.76	5.08	9.52	8.05	7.46	4.33	5.53	1.20	0.832420	1.000000
N	jcn_only_AD	GIMAP1-GIMAP5,GIMAP5	chr7	+	chr7:150434797-150437966;chr7:150437727-150437966	chr7:150437592-150437966		chr7:150434797-150437591;chr7:150437592-150437726	chr7:150434796-150434797;chr7:150437591-150437592		3.49	0.00	1.75	NA	NA	NA	0.00	10.53	9.68	3.45	0.00	0.00	0.00	8.93	11.90	0.00	0.00	20.00	NA	7.07	0.00	8.33	7.14	0.00	0.00	10.07	7.69	2.56	0.00	8.33	4.35	7.69	0.00	10.00	0.00	20.00	0.00	8.00	8.00	0.001691	0.125290
N	cassette	TMEM150B	chr19	-	chr19:55831986-55834015	chr19:55831986-55832336;chr19:55832462-55834015		chr19:55832337-55832461			100.00	100.00	100.00	NA	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.45	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	FCGRT	chr19	+	chr19:50028034-50028713	chr19:50028606-50028713		chr19:50028034-50028605	chr19:50028033-50028034		8.13	2.13	7.53	0.40	1.28	0.12	1.17	2.07	0.48	0.76	1.63	0.94	2.09	4.90	0.85	1.03	2.46	1.02	1.95	11.04	2.39	1.21	2.24	0.86	2.09	3.12	4.72	0.64	1.31	0.20	2.16	5.87	1.85	0.99	2.59	0.64	2.02	4.01	1.99	0.073280	0.460677
N	jcn_only_AD	CSNK1A1	chr5	-	chr5:148876424-148885009;chr5:148876424-148878532;chr5:148876424-148885045	chr5:148876424-148884243		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		0.00	0.00	2.33	0.00	6.94	10.00	0.00	0.00	0.00	2.61	1.28	0.00	0.71	0.78	0.00	1.42	2.68	4.00	4.35	6.02	4.35	4.17	3.67	6.10	0.00	2.59	3.54	3.17	4.81	0.00	3.57	4.17	0.00	4.23	3.33	2.38	0.00	1.69	1.69	0.301949	0.657607
K	cassette	UQCRH	chr1	+	chr1:46774800-46775826	chr1:46774800-46775568;chr1:46775717-46775826		chr1:46775569-46775716			3.32	2.23	3.90	2.63	3.10	3.76	4.56	7.32	8.63	4.76	3.95	4.48	4.34	6.06	7.14	4.74	4.11	3.53	2.81	4.03	2.82	3.86	3.91	4.07	3.18	7.45	6.63	6.16	7.02	5.65	6.16	4.63	2.42	3.32	3.45	3.56	3.00	6.11	3.11	0.015236	0.369835
N	jcn_only_AD	NDUFS3,PTPMT1	chr11	+	chr11:47573986-47587457;chr11:47574259-47587457	chr11:47587349-47587457		chr11:47573986-47574258;chr11:47574259-47587348	chr11:47573985-47573986;chr11:47574258-47574259		87.76	100.00	66.20	86.36	100.00	100.00	100.00	94.44	84.42	100.00	100.00	100.00	100.00	94.59	86.02	100.00	100.00	100.00	95.56	90.00	85.87	100.00	100.00	100.00	100.00	77.42	67.50	100.00	100.00	100.00	73.58	62.50	97.06	100.00	100.00	100.00	100.00	88.88	-11.12	0.017211	0.307491
N	alternative_donor	IRF9,RP11-468E2.4	chr14	+	chr14:24630548-24631352	chr14:24631100-24631352		chr14:24630548-24631099	chr14:24630547-24630548		2.94	0.00	3.53	NA	NA	NA	0.00	3.23	1.35	0.00	0.00	0.00	1.56	2.44	1.10	0.93	1.69	1.43	NA	4.05	0.00	3.03	2.78	1.20	8.33	3.19	1.22	1.47	0.00	1.45	6.67	3.33	NA	3.70	2.78	2.75	0.78	3.21	2.43	0.575156	0.799662
K	cassette	COPS4	chr4	+	chr4:83989676-83996449	chr4:83989676-83994358;chr4:83994507-83996449		chr4:83994359-83994506			2.78	0.00	4.00	0.00	2.44	0.00	2.78	0.00	3.12	0.00	1.85	2.50	0.00	0.00	3.33	2.56	2.08	2.70	0.00	3.33	0.00	0.00	3.77	3.03	0.00	6.45	3.85	0.00	2.56	2.63	0.00	1.96	2.22	2.08	4.76	2.44	0.00	1.39	1.39	0.323978	0.709176
K	intron_retention	AGTRAP	chr1	+	chr1:11805895-11807496				chr1:11805894-11805895;chr1:11807496-11807497		7.29	0.00	6.19	11.11	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.75	1.60	0.00	0.00	0.00	3.57	3.09	3.90	4.00	3.45	7.14	0.00	4.72	4.80	6.90	1.82	4.65	2.86	4.76	0.00	0.00	5.08	11.11	0.00	2.97	2.97	0.328024	1.000000
K	coord_cassette	RNF135	chr17	+	chr17:29298464-29324259	chr17:29298464-29311634;chr17:29311779-29314961;chr17:29315125-29324259		chr17:29311635-29311778;chr17:29314962-29315124			100.00	100.00	100.00	NA	97.30	NA	100.00	100.00	100.00	NA	97.50	NA	100.00	97.62	100.00	NA	100.00	NA	100.00	97.50	NA	NA	100.00	NA	100.00	100.00	97.14	NA	100.00	NA	100.00	100.00	94.74	100.00	100.00	NA	100.00	100.00	0.00	0.951836	0.972993
N	alternative_donor	TCIRG1	chr11	+	chr11:67816905-67817129;chr11:67816762-67817129;chr11:67816922-67817129;chr11:67816758-67817129	chr11:67816899-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		0.00	0.00	0.38	0.57	0.65	3.42	1.65	0.67	1.82	1.14	2.19	0.00	1.87	0.61	1.30	1.39	1.77	0.00	1.21	3.21	0.51	1.12	1.27	1.75	0.00	5.37	1.84	1.55	1.06	0.00	0.00	0.44	1.20	0.85	0.88	0.88	1.21	0.64	-0.57	0.514525	0.765650
N	alternative_acceptor	ARHGAP25,CEBPZOS	chr2	+	chr2:69050005-69053118	chr2:69050005-69051053		chr2:69051054-69053118	chr2:69053118-69053119		1.04	1.79	1.82	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	2.27	5.00	NA	0.55	1.43	1.75	1.56	0.00	1.49	1.15	0.00	3.39	1.79	1.12	0.00	0.80	0.80	0.474169	0.776164
K	intron_retention	HOMER3	chr19	-	chr19:19049859-19051859				chr19:19049858-19049859;chr19:19051859-19051860		14.29	0.00	5.88	NA	8.82	NA	0.00	NA	NA	0.00	0.00	0.00	2.00	NA	NA	0.00	3.85	0.00	0.00	8.33	NA	0.00	2.11	NA	0.00	0.00	0.00	0.00	3.28	NA	0.00	0.00	0.00	0.00	3.57	5.88	0.00	4.17	4.17	0.520575	1.000000
N	cassette	LSP1	chr11	+	chr11:1905554-1907961;chr11:1905255-1907961	chr11:1905554-1905729,chr11:1905255-1905729;chr11:1905812-1907961		chr11:1905730-1905811			100.00	96.63	100.00	100.00	98.98	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.57	100.00	100.00	97.84	100.00	100.00	98.49	98.91	99.03	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	98.87	98.16	97.65	98.92	100.00	1.08	0.106072	0.692231
K	jcn_only_AA	GPX4	chr19	+	chr19:1105510-1105663	chr19:1105510-1105656		chr19:1105657-1105663	chr19:1105663-1105664		100.00	100.00	100.00	96.82	96.17	95.93	100.00	98.63	100.00	100.00	100.00	100.00	100.00	98.01	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.96	93.40	100.00	100.00	100.00	95.44	95.91	94.32	100.00	100.00	100.00	0.00	0.358138	0.663989
K	intron_retention	ZFYVE19	chr15	+	chr15:41105101-41105535				chr15:41105100-41105101;chr15:41105535-41105536		15.38	17.44	9.38	21.43	16.22	7.69	0.00	7.69	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.55	0.00	9.62	8.33	6.67	NA	7.53	4.35	2.70	7.69	2.00	6.67	14.29	5.71	18.87	0.00	12.90	0.00	6.04	7.69	1.65	0.757081	1.000000
N	cassette	STAT6	chr12	-	chr12:57502083-57504911;chr12:57502083-57504892	chr12:57502083-57503825;chr12:57503894-57504911,chr12:57503894-57504892		chr12:57503826-57503893			2.38	0.00	2.99	NA	NA	NA	4.35	4.44	7.77	13.64	7.69	16.28	8.91	5.11	9.94	14.04	17.11	20.00	NA	1.92	NA	0.00	0.00	4.65	0.00	4.76	0.00	5.26	0.00	5.88	0.00	2.78	NA	6.25	3.03	9.72	2.17	3.41	1.24	0.930069	0.982136
N	alternative_first_exon	RABGAP1L	chr1	+	chr1:174872106-174926593;chr1:174781099-174926593;chr1:174843645-174926593	chr1:174846744-174926593	chr1:174780970-174781098;chr1:174843596-174843644	chr1:174846530-174846743			47.30	9.09	NA	18.18	6.67	39.53	25.00	60.54	54.79	NA	7.14	45.90	20.00	52.49	50.59	41.18	6.25	51.56	NA	47.14	34.62	NA	8.33	38.71	NA	49.41	NA	42.11	9.09	45.86	48.00	NA	18.18	16.67	10.00	48.61	19.09	48.70	29.61	0.000286	0.012725
N	cassette	TNFAIP2	chr14	+	chr14:103589821-103592646;chr14:103590289-103592646;chr14:103590251-103592646	chr14:103589821-103590711,chr14:103590289-103590711,chr14:103590251-103590711;chr14:103590844-103592646		chr14:103590712-103590843			6.38	1.79	5.85	NA	NA	13.64	6.82	5.47	7.24	10.85	9.26	11.19	6.48	7.27	7.12	8.02	8.42	8.57	NA	6.25	10.00	6.22	2.94	6.40	18.18	22.05	12.82	13.89	13.73	17.54	6.33	4.83	0.00	5.95	5.45	7.66	6.48	6.36	-0.12	0.590541	0.844113
K	jcn_only_AA	APRT	chr16	-	chr16:88876249-88876477;chr16:88876316-88876477	chr16:88876115-88876477		chr16:88876115-88876248;chr16:88876249-88876315	chr16:88876114-88876115;chr16:88876248-88876249		18.75	27.69	12.90	38.14	26.27	26.14	18.23	0.00	9.68	37.50	38.06	35.62	24.44	14.29	13.75	27.66	39.29	31.94	29.52	25.00	24.67	32.20	28.68	30.77	28.63	NA	18.60	24.69	25.85	28.00	17.65	10.26	28.34	34.88	22.88	22.41	28.02	17.65	-10.37	0.055146	0.663989
K	intron_retention	CIRBP	chr19	+	chr19:1271467-1271549				chr19:1271466-1271467;chr19:1271549-1271550		43.75	56.52	61.90	NA	7.14	NA	10.00	0.00	5.26	0.00	0.00	0.00	0.00	7.14	4.35	0.00	0.00	NA	17.39	25.00	31.82	NA	29.41	50.00	23.08	40.00	NA	6.67	20.00	7.69	50.00	50.00	62.50	36.36	30.77	34.48	20.23	32.50	12.27	0.957566	1.000000
K	intron_retention	AC002398.9,LIN37	chr19	+	chr19:36244155-36244917				chr19:36244154-36244155;chr19:36244917-36244918		25.00	16.42	16.67	25.64	18.37	15.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	3.57	6.25	6.67	22.64	23.08	17.39	33.33	21.05	46.15	17.33	11.76	21.88	9.52	31.82	13.51	34.29	26.53	25.35	22.22	34.78	28.12	16.88	17.42	0.54	0.872725	1.000000
N	alternative_donor	CREBZF	chr11	-	chr11:62371514-62371595	chr11:62371514-62371584		chr11:62371585-62371595	chr11:62371595-62371596		100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	90.91	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	93.75	100.00	95.45	100.00	100.00	0.00	0.771686	0.913935
N	cassette	NCOR2	chr12	-	chr12:124810917-124816864;chr12:124810917-124815390	chr12:124810917-124811954;chr12:124812180-124815390,chr12:124812180-124816864		chr12:124811955-124812179			83.33	78.95	75.00	43.75	57.14	NA	73.68	86.36	72.73	52.38	55.26	66.67	65.85	77.78	69.23	58.82	61.11	60.00	NA	100.00	90.00	67.65	70.83	70.27	63.64	79.31	77.78	65.52	70.31	57.14	87.50	81.82	70.00	72.97	76.32	61.02	70.00	84.84	14.84	0.005836	0.255099
N	jcn_only_AA	JTB	chr1	-	chr1:153949883-153950019;chr1:153949748-153950019	chr1:153949866-153950019		chr1:153949748-153949865;chr1:153949866-153949882	chr1:153949747-153949748;chr1:153949865-153949866		94.74	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	93.75	100.00	NA	NA	NA	100.00	100.00	0.00	0.391002	0.663989
K	alternative_first_exon	ARHGEF2	chr1	-	chr1:155939092-155939759,chr1:155939092-155939943,chr1:155939092-155948011,chr1:155939092-155948703;chr1:155939092-155952897;chr1:155939092-155948155	chr1:155939092-155947857	chr1:155952898-155952991;chr1:155948156-155948318	chr1:155947858-155947951			0.00	0.00	2.11	NA	NA	NA	1.28	1.59	0.00	2.35	1.28	1.20	2.44	3.85	0.74	1.04	3.19	1.36	NA	4.65	NA	3.85	4.00	1.67	0.00	7.41	2.04	0.00	7.14	0.00	0.00	2.22	NA	2.70	9.76	2.41	0.64	2.72	2.08	0.179128	0.388838
K	intron_retention	PLEKHM2	chr1	+	chr1:16055229-16055596				chr1:16055228-16055229;chr1:16055596-16055597		1.03	3.77	5.13	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.16	0.00	1.67	0.90	0.00	0.00	0.00	0.00	0.00	0.00	3.88	2.73	13.64	2.00	3.90	1.54	3.37	0.00	4.21	2.97	4.00	4.08	2.22	2.48	2.46	0.52	-1.95	0.714310	1.000000
K	jcn_only_AA	ACADVL,DHX8	chr17	+	chr17:7127713-7127802	chr17:7127713-7127798		chr17:7127799-7127802	chr17:7127802-7127803		87.22	85.68	92.19	86.70	84.30	88.26	98.68	97.92	97.96	99.08	99.17	98.65	98.56	93.90	95.92	97.94	98.84	99.22	85.37	92.16	90.78	86.73	83.44	88.29	87.41	94.17	85.98	90.64	89.97	95.15	85.99	83.19	87.46	89.02	87.36	91.18	87.44	93.03	5.59	0.676980	0.855732
N	cassette	DDB2	chr11	+	chr11:47256224-47259387	chr11:47256224-47256820;chr11:47256964-47259387		chr11:47256821-47256963			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	80.00	94.29	100.00	100.00	90.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AA	PLA2G4C	chr19	-	chr19:48558307-48565254	chr19:48565095-48565254					35.00	62.50	20.59	81.25	60.00	83.33	27.27	28.57	12.00	NA	54.55	60.00	NA	40.91	28.00	NA	NA	NA	65.71	33.96	38.10	36.84	31.25	40.00	50.00	32.95	22.73	50.00	45.71	61.29	44.07	27.69	35.71	29.73	25.86	37.50	50.00	34.48	-15.52	0.177303	0.663989
K	intron_retention		chr2	-	chr2:74592369-74592641				chr2:74592368-74592369;chr2:74592641-74592642		2.60	4.17	4.44	0.00	4.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	2.70	2.82	3.51	6.25	5.68	5.36	0.00	1.72	3.95	3.57	1.14	1.64	3.33	5.26	2.17	2.15	5.32	3.64	1.08	2.16	1.08	0.919688	1.000000
N	jcn_only_AD	EIF5B	chr2	+	chr2:100015314-100015769	chr2:100015373-100015769		chr2:100015314-100015372	chr2:100015313-100015314		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.67	100.00	100.00	93.48	100.00	100.00	97.70	100.00	95.24	100.00	100.00	96.08	96.67	100.00	94.87	100.00	NA	100.00	97.73	97.78	94.55	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	AHNAK	chr11	-	chr11:62304040-62312388;chr11:62304040-62323659;chr11:62304040-62314131;chr11:62304040-62313016;chr11:62304040-62313215	chr11:62304040-62313037		chr11:62312389-62313016;chr11:62313017-62313037;chr11:62313038-62313215;chr11:62313216-62314131;chr11:62314132-62323659	chr11:62313016-62313017;chr11:62313037-62313038;chr11:62313215-62313216;chr11:62314131-62314132;chr11:62323659-62323660		0.00	4.35	0.00	0.00	3.57	0.00	3.55	0.00	0.00	4.94	6.50	4.05	2.36	0.00	NA	4.84	4.97	2.50	0.00	0.00	0.00	0.00	2.20	5.00	0.00	0.00	NA	0.00	7.55	0.00	0.00	NA	7.32	2.22	4.69	1.25	2.96	0.00	-2.96	0.050384	0.507362
N	jcn_only_AD	ALYREF,MIR22HG	chr17	-	chr17:79846460-79847057;chr17:79846460-79846991	chr17:79846460-79846751		chr17:79846752-79846991;chr17:79846992-79847057	chr17:79846991-79846992;chr17:79847057-79847058		1.52	2.72	5.56	1.01	0.47	1.90	1.67	2.27	2.78	0.75	1.04	0.92	1.23	0.00	2.38	0.75	0.66	0.74	0.80	1.45	1.37	1.14	1.56	2.04	0.00	4.55	2.56	0.61	1.73	1.88	6.17	4.04	0.64	0.58	1.99	2.37	1.02	1.90	0.88	0.185717	0.657607
N	cassette	UBE2F,UBE2F-SCLY	chr2	+	chr2:238881868-238903385;chr2:238881868-238925207;chr2:238881868-238933982;chr2:238882390-238903385	chr2:238882390-238896604,chr2:238881868-238896604;chr2:238896635-238903385,chr2:238896635-238925207,chr2:238896635-238933982		chr2:238896605-238896634			85.19	100.00	88.64	83.33	94.44	90.48	93.83	94.74	95.06	97.33	92.75	97.87	98.46	91.51	92.50	97.83	98.25	92.45	97.22	88.33	93.62	100.00	93.33	92.86	100.00	95.65	90.00	100.00	98.18	100.00	84.75	87.50	85.71	98.28	92.31	90.60	97.84	89.92	-7.92	0.076091	0.640086
N	cassette	NAGK	chr2	+	chr2:71295972-71297870;chr2:71295843-71297870	chr2:71295843-71297631,chr2:71295972-71297631;chr2:71297717-71297870		chr2:71297632-71297716			92.81	97.45	91.94	91.67	98.77	89.47	98.65	98.28	100.00	96.79	98.54	97.78	99.08	99.45	97.62	98.24	99.61	98.86	93.10	93.65	97.78	93.33	94.05	91.84	89.22	94.48	89.13	91.51	95.31	96.07	92.24	91.94	91.75	98.67	95.87	97.79	95.28	94.06	-1.21	0.896498	0.967641
K	intron_retention		chr15	+	chr15:91430601-91432535				chr15:91430600-91430601;chr15:91432535-91432536		8.82	21.67	17.39	NA	7.14	NA	1.64	0.00	0.00	0.00	2.70	0.00	2.00	NA	NA	NA	5.88	NA	8.33	0.00	NA	NA	14.81	NA	10.34	NA	14.29	NA	8.33	NA	0.00	9.09	5.56	NA	8.33	9.68	6.95	0.00	-6.95	0.370815	1.000000
N	alternative_acceptor	JDP2	chr14	+	chr14:75904825-75911792;chr14:75904825-75928132	chr14:75904825-75928128		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		100.00	98.55	96.08	84.62	89.74	70.00	94.23	95.56	97.37	88.33	94.44	85.71	98.68	93.10	96.97	81.58	93.23	89.71	88.89	100.00	96.00	NA	97.67	85.71	100.00	94.29	100.00	73.33	94.23	47.06	100.00	97.14	100.00	82.61	90.16	77.78	98.62	97.78	-0.84	0.849422	0.946659
K	alternative_acceptor	ATP5D,ZNF333	chr19	+	chr19:1244185-1244317	chr19:1244185-1244313		chr19:1244314-1244317	chr19:1244317-1244318		96.43	100.00	100.00	100.00	100.00	100.00	97.53	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.86	100.00	100.00	93.02	100.00	87.76	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.826467	0.940678
K	intron_retention		chr11	+	chr11:71209575-71212347				chr11:71209574-71209575;chr11:71212347-71212348		2.56	3.31	10.34	3.33	3.23	2.86	0.00	0.00	4.55	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	1.75	4.55	1.57	2.13	0.99	2.27	1.11	7.14	0.00	3.92	1.28	3.17	5.88	3.23	2.99	3.92	1.45	5.45	2.34	3.55	1.21	0.769677	1.000000
K	alternative_last_exon	GGA1	chr22	+	chr22:38014554-38016213;chr22:38014554-38016244	chr22:38014554-38015806	chr22:38016245-38016368	chr22:38015807-38016051			6.25	0.00	2.82	NA	0.00	NA	0.00	4.55	0.00	0.00	1.54	0.00	1.59	4.17	4.55	2.50	0.00	0.00	NA	4.55	0.00	3.57	4.00	0.00	0.00	2.78	1.92	6.67	2.50	NA	0.00	5.66	NA	3.28	3.37	2.78	0.00	4.36	4.36	0.010862	0.161746
N	alternative_acceptor		chr1	+	chr1:68151810-68152123;chr1:68151810-68152102	chr1:68151810-68152032		chr1:68152033-68152102;chr1:68152103-68152123	chr1:68152102-68152103;chr1:68152123-68152124		100.00	100.00	100.00	NA	NA	NA	100.00	98.48	98.52	95.45	NA	100.00	100.00	100.00	98.54	100.00	93.33	100.00	100.00	100.00	100.00	94.12	100.00	97.22	NA	NA	100.00	NA	NA	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	cassette	PRKACA	chr19	-	chr19:14204050-14208172	chr19:14204050-14204439;chr19:14204605-14208172		chr19:14204440-14204604			100.00	100.00	100.00	NA	100.00	NA	98.08	100.00	98.28	97.30	97.87	98.00	98.78	100.00	94.87	100.00	98.62	100.00	NA	96.67	100.00	100.00	96.67	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	96.30	97.44	99.39	100.00	0.61	0.761054	0.925284
K	mutually_exclusive	SPP1	chr4	+	chr4:88898250-88901544,chr4:88901587-88902626	chr4:88898250-88901197,chr4:88901279-88902626	chr4:88901545-88901586	chr4:88901198-88901278			92.92	95.24	94.38	89.09	94.97	100.00	95.00	95.06	96.71	95.19	95.70	95.39	95.71	96.81	96.50	96.37	96.73	97.23	95.65	94.63	96.37	89.19	95.40	93.75	98.00	94.75	95.76	95.12	95.95	96.02	94.26	93.71	94.12	92.42	93.44	95.06	95.44	94.69	-0.75	0.260560	0.510003
N	alternative_donor	NFKBIB	chr19	+	chr19:39398300-39399370	chr19:39398356-39399370		chr19:39398300-39398355	chr19:39398299-39398300		30.77	7.35	33.33	9.43	11.67	5.43	26.32	30.00	34.88	22.62	29.55	15.09	40.91	48.57	42.86	29.17	30.00	18.67	3.95	20.00	11.01	21.31	19.15	18.84	8.06	43.75	28.57	26.32	21.21	14.49	27.78	26.19	5.95	19.64	35.90	28.77	7.71	30.38	22.68	0.038739	0.357790
N	cassette	LONP1	chr19	-	chr19:5699217-5705782	chr19:5699217-5700799;chr19:5700939-5705782		chr19:5700800-5700938			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140001900-140001993;chr9:140001900-140001982	chr9:140001900-140001989		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		8.70	0.00	4.35	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	3.33	6.67	4.17	NA	0.00	NA	0.00	10.00	4.76	NA	0.00	NA	0.00	4.17	0.00	0.00	0.00	0.00	0.00	7.68	7.68	0.076331	0.585944
K	cassette	DOK3	chr5	-	chr5:176932112-176936475	chr5:176932112-176935237;chr5:176935544-176936475		chr5:176935238-176935543			96.83	100.00	96.40	NA	96.55	NA	100.00	98.33	100.00	100.00	97.09	NA	99.09	98.11	100.00	96.88	96.51	NA	100.00	100.00	95.24	NA	97.33	NA	100.00	100.00	95.62	95.24	94.55	100.00	100.00	95.89	94.74	100.00	96.92	NA	100.00	99.16	-0.84	0.928998	0.982136
K	intron_retention	DNAJC17	chr15	-	chr15:41067795-41068393				chr15:41067794-41067795;chr15:41068393-41068394		0.00	2.44	4.76	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	5.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.50	0.00	0.00	10.53	3.03	4.76	0.00	0.00	0.00	0.00	0.00	0.796891	1.000000
K	intron_retention	RELT	chr11	+	chr11:73103514-73104881				chr11:73103513-73103514;chr11:73104881-73104882		9.52	13.64	11.57	NA	0.00	NA	2.27	1.59	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	NA	8.16	0.00	4.35	10.00	0.00	29.41	6.98	7.35	5.26	4.17	NA	0.00	4.26	NA	7.14	5.88	4.55	7.96	4.29	-3.67	0.738659	1.000000
K	alternative_first_exon	UBE2D3	chr4	-	chr4:103747794-103747924,chr4:103747794-103748309,chr4:103747794-103748524,chr4:103747794-103748577,chr4:103747794-103748668,chr4:103747794-103748756;chr4:103747794-103789871	chr4:103747794-103749100,chr4:103747794-103748891,chr4:103747794-103748748,chr4:103747794-103748583	chr4:103789872-103790053	None			99.24	100.00	98.01	100.00	100.00	100.00	99.02	98.91	97.20	97.41	98.83	97.19	99.39	97.80	99.14	97.12	99.46	98.25	100.00	95.76	93.33	97.74	100.00	95.86	NA	97.44	99.40	97.12	98.00	96.12	98.67	97.41	NA	97.66	99.30	97.10	99.69	98.23	-1.46	0.025736	0.118071
N	jcn_only_AA	UBAP2L	chr1	+	chr1:154239045-154241232;chr1:154239045-154241296;chr1:154239045-154245128	chr1:154239045-154241235		chr1:154241233-154241235;chr1:154241236-154241296;chr1:154241297-154245128	chr1:154241235-154241236;chr1:154241296-154241297;chr1:154245128-154245129		19.15	23.81	14.93	18.75	19.05	NA	25.00	40.74	26.67	37.84	30.23	31.43	25.86	33.33	29.63	34.29	30.61	40.00	7.69	17.65	15.00	15.38	18.75	28.85	54.55	22.50	19.05	30.43	29.55	36.67	18.92	21.92	8.70	24.14	26.53	14.74	24.41	20.82	-3.58	0.891850	0.961782
K	intron_retention	SAFB2	chr19	-	chr19:5590420-5591758				chr19:5590419-5590420;chr19:5591758-5591759		7.69	0.00	4.08	0.00	1.79	1.92	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.36	2.25	2.17	3.90	3.85	0.00	6.45	0.00	0.00	0.00	0.00	1.90	2.37	2.16	4.17	1.92	4.29	0.00	5.36	5.36	0.266444	1.000000
N	alternative_acceptor		chr7	+	chr7:100482460-100482552;chr7:100482460-100482548	chr7:100482460-100482543		chr7:100482544-100482548;chr7:100482549-100482552	chr7:100482548-100482549;chr7:100482552-100482553		92.86	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	90.70	NA	100.00	100.00	96.30	100.00	100.00	0.00	0.214916	0.671511
K	intron_retention	NIT1	chr1	+	chr1:161089403-161089608				chr1:161089402-161089403;chr1:161089608-161089609		2.63	0.00	9.80	NA	9.52	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	5.71	0.00	0.00	7.14	0.00	0.00	3.33	4.65	5.00	3.57	0.00	0.00	5.41	0.00	6.25	4.00	9.38	0.00	1.31	1.31	0.943047	1.000000
K	alternative_last_exon	KARS	chr16	-	chr16:75661888-75678180	chr16:75675622-75678180	chr16:75661656-75661887	chr16:75675462-75675621			3.95	0.00	7.84	0.00	0.00	0.00	22.22	16.67	22.22	13.48	12.50	12.50	21.88	12.77	14.29	16.67	19.48	8.65	0.00	2.99	1.41	3.77	4.94	9.20	0.00	2.22	11.90	6.76	6.76	1.97	2.74	4.41	0.00	8.70	9.86	6.03	0.00	3.47	3.47	0.932991	0.970324
N	cassette	LMF2	chr22	-	chr22:50943414-50943831;chr22:50943414-50943657	chr22:50943414-50943485;chr22:50943583-50943831,chr22:50943583-50943657		chr22:50943486-50943582			97.62	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	94.29	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.50	91.67	92.31	100.00	97.67	100.00	100.00	0.00	0.495761	0.779741
K	jcn_only_AA	HSPA9	chr5	-	chr5:137892263-137893090	chr5:137892556-137893090					90.00	90.79	100.00	87.50	89.11	90.00	88.94	96.25	92.91	96.05	94.96	94.36	93.48	93.33	93.33	94.31	95.12	94.00	82.26	95.83	93.80	91.56	95.65	93.96	83.87	96.43	90.77	93.01	94.55	92.98	94.29	93.58	89.09	93.06	92.00	90.95	89.02	95.06	6.05	0.013734	0.509971
N	jcn_only_AA	TRPM2	chr21	+	chr21:45810909-45811154;chr21:45810909-45811315	chr21:45810909-45811161		chr21:45811155-45811161;chr21:45811162-45811315	chr21:45811161-45811162;chr21:45811315-45811316		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	WDFY2	chr13	+	chr13:52325552-52329493;chr13:52328534-52329493	chr13:52327056-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		6.25	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	CDK16	chrX	+	chrX:47088044-47088104;chrX:47088044-47088418;chrX:47088044-47088133	chrX:47088044-47088129		chrX:47088105-47088129;chrX:47088130-47088133;chrX:47088134-47088418	chrX:47088129-47088130;chrX:47088133-47088134;chrX:47088418-47088419		95.65	100.00	97.50	100.00	100.00	96.92	100.00	100.00	100.00	97.22	100.00	100.00	100.00	93.33	98.85	100.00	100.00	100.00	100.00	94.29	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	94.83	94.52	98.41	97.44	97.06	97.44	100.00	95.24	-4.76	0.035758	0.560254
N	alternative_acceptor	DDX41	chr5	-	chr5:176939642-176939780;chr5:176939647-176939780	chr5:176939668-176939780		chr5:176939642-176939646;chr5:176939647-176939667	chr5:176939641-176939642;chr5:176939646-176939647		5.41	3.17	6.00	5.56	6.82	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	2.56	7.69	2.63	8.33	4.76	7.14	10.26	0.00	7.32	6.25	3.70	6.67	11.11	7.14	7.27	5.56	5.71	7.14	2.87	6.55	3.69	0.477901	0.777631
N	alternative_acceptor	ATP6AP1,RAB9A	chrX	+	chrX:13722022-13731066;chrX:13722022-13733838;chrX:13722022-13726839	chrX:13722022-13722651		chrX:13722652-13726839;chrX:13726840-13731066;chrX:13731067-13733838	chrX:13726839-13726840;chrX:13731066-13731067;chrX:13733838-13733839		4.76	0.00	7.69	NA	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	5.56	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	4.35	5.88	3.57	3.45	3.33	0.00	0.00	0.00	0.687651	0.881898
K	intron_retention	H2AFY	chr5	-	chr5:134679125-134681657				chr5:134679124-134679125;chr5:134681657-134681658		4.74	3.08	9.49	2.70	3.50	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.66	0.00	2.17	0.75	0.00	0.00	3.75	3.77	2.70	3.37	5.78	1.59	7.50	4.69	3.76	1.09	2.23	0.98	6.85	7.02	4.76	5.22	5.72	2.22	3.42	4.23	0.82	0.950342	1.000000
N	alternative_acceptor		chr17	.	chr17:61655990-61656697	chr17:61655990-61656683		chr17:61656684-61656697	chr17:61656697-61656698		7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AD	PLD2	chr17	+	chr17:4722841-4725087;chr17:4722845-4725087;chr17:4722837-4725087	chr17:4722878-4725087		chr17:4722837-4722840;chr17:4722841-4722844;chr17:4722845-4722877	chr17:4722836-4722837;chr17:4722840-4722841;chr17:4722844-4722845		55.81	68.00	67.31	NA	73.58	NA	68.75	60.00	53.85	81.82	80.77	NA	60.87	75.00	78.26	NA	76.92	NA	77.27	66.67	72.22	NA	75.61	81.82	58.82	50.00	68.89	60.00	73.08	NA	56.00	54.69	53.57	66.67	74.55	78.95	64.44	58.00	-6.44	0.448773	0.706163
K	intron_retention	EIF4A2	chr3	+	chr3:186505374-186505591				chr3:186505373-186505374;chr3:186505591-186505592		3.90	0.00	4.42	0.00	0.00	0.00	0.00	0.00	0.52	0.00	3.66	0.00	1.75	0.00	1.27	3.12	3.00	0.00	0.00	3.37	0.00	5.00	3.25	6.54	0.00	3.59	2.23	7.02	2.47	2.13	4.05	2.83	0.00	4.55	4.84	4.13	0.00	3.48	3.48	0.096555	1.000000
N	cassette	EME2	chr16	+	chr16:1826341-1828455	chr16:1826341-1826746;chr16:1827407-1828455		chr16:1826747-1827406			100.00	100.00	96.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.88	100.00	100.00	100.00	89.47	NA	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.62	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.622158	0.862437
K	intron_retention		chr8	+	chr8:24262958-24263046				chr8:24262957-24262958;chr8:24263046-24263047		91.47	87.04	89.32	94.12	90.16	92.08	94.59	89.43	92.91	93.07	94.78	95.74	93.33	91.86	93.42	91.18	97.04	93.75	82.09	89.92	90.50	94.02	90.80	89.41	100.00	88.32	90.04	90.91	93.15	94.36	86.69	86.39	88.00	91.63	91.44	91.19	90.66	89.68	-0.99	0.892540	1.000000
N	alternative_acceptor	EIF4B	chr12	+	chr12:53432196-53433033;chr12:53432196-53433021	chr12:53432196-53433018		chr12:53433019-53433021;chr12:53433022-53433033	chr12:53433021-53433022;chr12:53433033-53433034		4.76	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	2.78	0.00	3.57	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	3.85	4.65	1.67	1.82	3.33	2.27	0.00	1.93	1.93	0.209521	0.670733
K	cassette	WBP1	chr2	+	chr2:74685799-74686769	chr2:74685799-74686604;chr2:74686690-74686769		chr2:74686605-74686689			0.00	0.00	0.00	NA	4.76	NA	2.78	0.00	3.12	8.33	4.35	0.00	2.78	0.00	4.00	0.00	4.55	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.55	0.00	3.12	0.00	0.00	4.17	0.00	0.00	10.00	5.56	0.00	0.00	0.00	0.174688	0.709176
N	cassette	ABCD4	chr14	-	chr14:74754590-74755418	chr14:74754590-74754909;chr14:74754963-74755418		chr14:74754910-74754962			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	88.89	100.00	NA	90.48	100.00	94.12	100.00	100.00	NA	92.31	100.00	100.00	96.77	91.18	95.65	95.00	100.00	100.00	100.00	0.00	0.811664	0.936947
N	jcn_only_AA	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556658;chr11:62555000-62556573;chr11:62555000-62556494	chr11:62555000-62556597		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		0.00	7.50	4.48	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	4.41	0.00	NA	0.00	3.77	0.00	0.00	0.00	6.25	4.41	9.68	0.00	7.41	0.00	4.76	0.00	-4.76	0.325474	0.663989
N	alternative_donor	BAG1,DDX58	chr9	-	chr9:33262829-33264273;chr9:33262829-33265483;chr9:33262829-33264221	chr9:33262829-33264203		chr9:33264204-33264221;chr9:33264222-33264273;chr9:33264274-33265483	chr9:33264221-33264222;chr9:33264273-33264274;chr9:33265483-33265484		1.67	10.71	4.35	0.00	0.00	0.00	3.03	1.04	2.04	0.00	2.78	4.62	3.12	3.06	1.64	1.39	2.38	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	2.17	0.00	1.52	0.00	0.00	0.00	0.00	3.57	1.00	1.51	1.23	-0.28	0.396847	0.659356
K	intron_retention	RP11-264B17.3,SPNS1	chr16	+	chr16:28995279-28995525				chr16:28995278-28995279;chr16:28995525-28995526	chr16:28995107-28995278;chr16:28995526-28995864	2.63	1.86	2.63	2.04	2.30	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	2.63	0.76	0.00	2.31	0.00	2.23	0.00	0.00	1.41	0.00	1.45	7.50	1.49	2.29	1.25	1.35	1.52	1.50	1.31	-0.19	0.817639	1.000000
K	intron_retention	KDM1A	chr1	+	chr1:23408860-23409671				chr1:23408859-23408860;chr1:23409671-23409672		6.25	7.77	13.33	2.50	8.20	4.44	7.41	NA	8.00	4.26	5.13	5.88	10.26	9.09	0.00	1.75	6.67	0.00	4.62	7.14	2.94	6.25	12.20	10.34	0.00	8.33	13.73	5.26	7.50	7.69	0.00	5.36	4.76	8.33	11.76	7.50	6.08	7.14	1.05	0.772685	1.000000
N	alternative_acceptor	NCF1	chr7	+	chr7:74202433-74202902	chr7:74202433-74202831		chr7:74202832-74202902	chr7:74202902-74202903		2.94	3.02	3.96	3.57	1.36	4.17	0.00	1.23	1.72	1.52	1.24	0.79	0.86	1.13	2.17	1.11	1.14	0.00	2.90	2.33	2.94	3.51	1.37	5.56	3.86	3.09	3.50	5.93	1.24	3.63	2.23	3.24	3.42	2.94	3.43	2.97	2.96	2.28	-0.68	0.802745	0.926369
N	jcn_only_AD	USP19	chr3	-	chr3:49145962-49147616	chr3:49145962-49147171		chr3:49147172-49147616	chr3:49147616-49147617		2.78	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	IRF3	chr19	-	chr19:50164086-50165681	chr19:50164086-50164706;chr19:50165586-50165681		chr19:50164707-50165585			100.00	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.44	NA	100.00	90.91	94.34	NA	100.00	NA	94.81	95.24	94.34	NA	94.29	NA	100.00	98.04	96.15	100.00	92.59	100.00	100.00	100.00	0.00	0.673942	0.882035
K	coord_cassette	PDCD6	chr5	+	chr5:304337-314531	chr5:304337-306716;chr5:306870-311407;chr5:311518-313815;chr5:313966-314531		chr5:306717-306869;chr5:311408-311517;chr5:313816-313965			100.00	100.00	92.59	NA	88.24	NA	93.55	100.00	90.91	100.00	97.06	NA	89.47	92.31	86.96	86.36	94.74	NA	NA	100.00	94.12	90.00	89.66	NA	NA	93.75	100.00	93.33	92.31	NA	100.00	95.00	90.00	100.00	100.00	100.00	91.78	100.00	8.22	0.177834	0.643829
K	alternative_first_exon	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62473090-62473474;chr11:62473090-62474580	chr11:62473090-62473730,chr11:62473090-62473674,chr11:62473090-62473387	chr11:62474581-62474870	None			74.47	66.67	51.43	NA	41.67	NA	85.48	78.95	45.83	94.12	83.05	85.37	83.05	73.08	52.38	80.00	88.14	80.77	NA	71.88	NA	68.42	69.77	66.67	NA	60.71	35.48	64.29	64.29	64.71	78.79	58.33	53.85	73.33	77.14	73.33	74.86	73.78	-1.08	0.932272	0.960353
N	jcn_only_AA	RNF40	chr16	+	chr16:30783512-30785634;chr16:30783512-30785135	chr16:30783512-30785258		chr16:30785136-30785258;chr16:30785259-30785634	chr16:30785258-30785259;chr16:30785634-30785635		96.77	100.00	100.00	100.00	92.31	NA	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	97.78	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.512766	0.760908
N	alternative_acceptor	GAS5	chr1	-	chr1:173833641-173833812	chr1:173833645-173833812		chr1:173833641-173833644	chr1:173833640-173833641		100.00	94.12	91.67	100.00	100.00	98.25	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.62	90.00	98.00	100.00	100.00	96.55	91.53	100.00	100.00	100.00	97.92	100.00	90.91	100.00	94.95	100.00	100.00	100.00	94.78	95.45	0.67	0.844475	0.944990
K	jcn_only_AA	RNASE1	chr14	-	chr14:21270479-21270955	chr14:21270491-21270955		chr14:21270479-21270490	chr14:21270478-21270479		36.92	30.16	45.83	35.38	35.69	34.21	43.51	44.70	42.27	42.31	42.60	43.42	46.02	42.60	51.28	45.25	42.43	45.70	41.38	41.38	42.59	35.07	38.96	39.53	26.83	45.86	36.92	42.19	40.87	39.75	42.97	35.19	35.54	41.43	37.17	39.13	38.46	42.78	4.32	0.173324	0.663989
K	alternative_donor	DENND4B,TRAPPC3	chr1	-	chr1:36605768-36614860;chr1:36605768-36614937	chr1:36605768-36614692		chr1:36614693-36614860;chr1:36614861-36614937	chr1:36614860-36614861;chr1:36614937-36614938		5.00	8.47	4.76	9.68	7.35	7.89	4.11	3.51	8.86	6.98	6.67	6.38	4.35	9.84	9.62	13.04	8.24	5.71	7.69	2.82	5.06	7.55	8.60	2.17	0.00	4.05	5.00	6.82	7.81	5.00	5.56	4.55	6.38	11.76	5.08	7.14	5.37	4.53	-0.84	0.982406	0.994374
K	cassette	NSMCE1	chr16	-	chr16:27246621-27268755	chr16:27246621-27253119;chr16:27253211-27268755		chr16:27253120-27253210			2.63	4.88	1.59	NA	0.00	0.00	3.03	NA	1.85	0.00	1.92	0.00	1.56	10.00	0.00	3.12	2.08	0.00	0.00	0.00	2.50	4.55	2.33	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	3.23	2.50	5.26	5.41	3.57	2.03	0.00	-2.03	0.808562	0.936947
N	jcn_only_AA	ZDHHC12	chr9	-	chr9:131483760-131483929;chr9:131483777-131483929;chr9:131483810-131483929;chr9:131483680-131483929	chr9:131483782-131483929		chr9:131483680-131483759;chr9:131483760-131483776;chr9:131483777-131483781;chr9:131483782-131483809	chr9:131483679-131483680;chr9:131483759-131483760;chr9:131483776-131483777;chr9:131483781-131483782		95.35	88.06	94.29	100.00	95.31	91.67	94.03	96.00	94.05	95.24	93.06	92.86	92.44	93.33	95.51	89.47	97.62	88.00	94.20	94.29	95.33	84.62	93.22	100.00	73.91	86.49	78.87	84.21	85.45	85.71	88.75	87.23	81.63	91.67	86.96	86.36	90.25	93.81	3.56	0.216131	0.663989
K	intron_retention	SGSM3	chr22	+	chr22:40802667-40803020				chr22:40802666-40802667;chr22:40803020-40803021		7.14	0.00	12.00	NA	0.00	NA	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	NA	7.69	0.00	NA	6.90	9.09	10.00	NA	15.38	NA	9.09	8.33	NA	9.52	0.00	7.14	10.00	11.11	0.00	3.57	3.57	0.651046	1.000000
N	cassette	AC018755.18,SIGLEC5	chr19	-	chr19:52115676-52130401	chr19:52115676-52129284;chr19:52129367-52130401		chr19:52129285-52129366			91.18	92.50	86.79	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	84.62	100.00	NA	97.22	96.23	100.00	NA	87.88	100.00	100.00	94.55	91.76	NA	84.62	87.50	100.00	96.72	91.67	92.59	90.91	94.29	97.22	96.23	-0.99	0.964132	0.990507
N	jcn_only_AA	RNPEPL1	chr2	+	chr2:241515028-241516016;chr2:241515028-241515951	chr2:241515028-241515984		chr2:241515952-241515984;chr2:241515985-241516016	chr2:241515984-241515985;chr2:241516016-241516017		6.90	8.00	14.29	0.00	6.98	NA	6.19	9.38	7.50	7.69	8.82	6.67	8.11	6.06	3.57	6.90	8.24	NA	10.71	0.00	6.67	0.00	18.18	NA	5.88	9.52	0.00	0.00	7.27	NA	18.75	4.55	6.25	6.90	4.08	7.69	7.12	8.14	1.02	0.739063	0.883015
K	cassette	MZT2B	chr2	+	chr2:130940026-130948041	chr2:130940026-130940199;chr2:130940349-130948041		chr2:130940200-130940348			93.02	84.82	86.36	90.32	84.91	85.38	91.43	92.00	97.50	96.63	91.67	93.51	95.48	88.89	97.14	90.91	91.43	93.33	86.20	91.67	89.02	83.87	85.44	84.91	85.42	95.45	88.37	91.78	87.74	89.62	96.88	88.68	84.25	84.85	90.41	87.50	85.81	92.51	6.70	0.047419	0.551017
K	intron_retention	RABGGTA	chr14	-	chr14:24737165-24737315				chr14:24737164-24737165;chr14:24737315-24737316		0.00	0.00	0.00	8.33	4.35	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	2.94	0.00	0.00	0.00	0.487702	1.000000
K	intron_retention	RP11-2C24.4,RP11-2C24.9,TMEM265	chr16	+	chr16:30752029-30753061				chr16:30752028-30752029;chr16:30753061-30753062		22.73	23.40	18.18	0.00	9.68	20.00	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	18.18	0.00	18.52	10.00	17.24	NA	6.67	0.00	19.23	NA	12.50	NA	18.18	20.69	18.52	18.18	14.29	15.38	18.18	9.09	-9.09	0.566134	1.000000
K	intron_retention	PLCB3	chr11	+	chr11:64032975-64033357				chr11:64032974-64032975;chr11:64033357-64033358		5.41	3.70	5.00	7.14	8.57	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.23	2.56	0.00	1.85	NA	3.33	13.51	6.00	4.55	4.23	9.09	0.00	4.76	7.69	4.35	0.00	NA	4.00	6.67	9.68	3.85	13.64	14.29	1.67	4.38	2.71	0.967003	1.000000
N	cassette	FBXO7	chr22	+	chr22:32889269-32894130	chr22:32889269-32891479;chr22:32891518-32894130		chr22:32891480-32891517			100.00	100.00	97.85	100.00	100.00	100.00	97.10	97.69	97.39	96.88	100.00	97.12	100.00	100.00	96.33	100.00	99.16	97.73	100.00	94.32	100.00	100.00	100.00	100.00	100.00	97.92	100.00	98.11	94.29	98.84	96.00	100.00	100.00	97.33	98.81	99.27	100.00	97.81	-2.19	0.110779	0.708559
K	intron_retention	CYP27A1	chr2	+	chr2:219679182-219679267				chr2:219679181-219679182;chr2:219679267-219679268		7.41	3.09	2.82	0.00	2.22	0.00	0.24	0.82	0.00	0.45	0.29	0.00	0.00	0.00	0.00	0.83	0.00	0.00	5.46	3.76	1.91	1.74	2.91	0.00	9.48	1.30	3.37	3.26	1.24	0.00	4.13	3.05	5.76	3.70	4.08	2.25	4.28	2.53	-1.75	0.817483	1.000000
K	intron_retention	HPS1	chr10	-	chr10:100183426-100183509				chr10:100183425-100183426;chr10:100183509-100183510		7.14	3.33	8.77	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.06	0.00	4.08	0.00	0.00	0.00	2.44	2.13	7.89	2.38	4.24	2.27	0.00	6.98	5.17	7.14	4.35	2.56	2.08	3.39	0.00	1.72	3.80	3.37	1.03	2.10	1.07	0.780783	1.000000
K	alternative_donor	PRKCSH	chr19	+	chr19:11546528-11546861	chr19:11546532-11546861		chr19:11546528-11546531	chr19:11546527-11546528		5.41	7.14	1.79	8.33	4.35	NA	4.83	4.55	7.14	5.33	4.35	5.19	4.00	4.94	4.88	5.50	4.21	4.23	5.00	3.51	2.63	4.17	2.20	4.48	0.00	5.08	6.02	1.82	5.00	5.77	3.92	1.49	0.00	3.77	3.33	4.12	4.42	4.75	0.33	0.415035	0.676806
N	jcn_only_AA	LRP1	chr12	+	chr12:121666670-121666836	chr12:121666670-121666765		chr12:121666766-121666836	chr12:121666836-121666837		94.83	100.00	94.03	93.18	98.04	100.00	100.00	99.40	100.00	99.13	100.00	99.13	100.00	100.00	98.46	98.04	99.26	99.63	100.00	97.81	100.00	94.81	97.50	95.16	100.00	99.46	100.00	97.01	98.54	98.76	97.06	95.92	100.00	93.53	95.49	96.09	100.00	98.61	-1.39	0.061977	0.663989
N	alternative_donor	ALYREF,MIR22HG	chr17	-	chr17:79846460-79847057;chr17:79846460-79846991	chr17:79846460-79846751		chr17:79846752-79846991;chr17:79846992-79847057	chr17:79846991-79846992;chr17:79847057-79847058		0.00	0.56	2.30	0.00	0.00	0.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	2.86	0.69	0.57	1.05	1.37	0.00	0.00	1.30	0.00	0.58	1.26	5.00	4.04	1.27	0.00	1.33	1.79	0.00	0.00	0.00	0.309337	0.650093
N	jcn_only_AD	PNPLA6	chr19	+	chr19:7622171-7623735;chr19:7623614-7623735	chr19:7621969-7623735		chr19:7621969-7622170;chr19:7622171-7623613	chr19:7621968-7621969;chr19:7622170-7622171		0.00	5.88	1.80	0.00	0.00	0.00	1.20	2.94	3.33	0.00	0.00	0.00	1.04	0.00	0.00	3.33	4.84	0.00	0.00	0.89	0.88	0.00	3.23	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	1.12	0.45	-0.68	0.420315	0.681153
K	alternative_donor	ATP6AP1	chrX	+	chrX:153660004-153660175;chrX:153657750-153660175	chrX:153657521-153660175		chrX:153657521-153657749;chrX:153657750-153660003	chrX:153657520-153657521;chrX:153657749-153657750		98.42	96.55	97.41	92.86	98.55	NA	99.30	99.18	99.36	98.90	99.16	99.67	98.98	99.19	98.33	98.52	99.05	99.59	94.44	98.03	98.67	95.80	97.63	97.97	93.94	98.08	98.29	97.67	97.40	97.62	97.78	97.89	96.30	96.26	96.38	97.58	96.42	98.25	1.83	0.097732	0.495947
K	intron_retention	GGA1	chr22	+	chr22:38021957-38025468				chr22:38021956-38021957;chr22:38025468-38025469		0.00	2.63	2.70	NA	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	3.23	0.00	0.00	0.00	0.00	1.85	0.00	0.00	1.14	0.00	10.53	2.63	1.79	3.85	3.85	0.00	0.00	3.03	5.56	2.04	4.41	5.88	2.12	0.00	-2.12	0.636371	1.000000
N	cassette	SECTM1	chr17	-	chr17:80280247-80282457	chr17:80280247-80280753;chr17:80280782-80282457		chr17:80280754-80280781			100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	NA	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	91.67	100.00	92.31	97.16	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	PHRF1	chr11	+	chr11:609721-610195				chr11:609720-609721;chr11:610195-610196		10.00	0.00	2.38	0.00	4.17	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	6.67	6.25	4.00	5.00	7.14	12.50	5.88	0.00	0.00	0.00	0.00	4.17	11.11	13.95	12.50	18.75	8.00	7.14	2.94	3.12	0.19	0.504580	1.000000
K	jcn_only_AD	RNF220	chr1	+	chr1:45097881-45098014;chr1:45092071-45098014	chr1:45097885-45098014		chr1:45092071-45097880;chr1:45097881-45097884	chr1:45092070-45092071;chr1:45097880-45097881		41.67	9.68	45.45	NA	60.00	NA	34.43	26.32	45.71	40.00	34.88	30.77	35.85	36.84	35.29	36.17	33.33	40.00	40.00	40.00	40.00	50.00	40.00	45.45	41.67	NA	38.89	50.00	30.00	NA	NA	42.11	45.45	50.00	31.25	58.33	37.92	38.42	0.50	0.793652	0.902717
N	intron_retention		chr22	-	chr22:50966147-50968332				chr22:50966146-50966147;chr22:50968332-50968333		64.88	72.97	66.30	67.69	46.67	63.03	100.00	89.89	94.90	96.88	93.62	96.92	92.50	79.47	84.31	92.13	87.37	93.33	54.17	68.49	54.80	73.44	56.49	80.85	71.93	83.53	70.90	85.71	68.97	81.74	60.40	71.88	41.54	71.43	63.89	78.82	72.45	73.98	1.53	0.620163	1.000000
K	cassette	ANXA2	chr15	-	chr15:60678286-60690069;chr15:60678286-60690141	chr15:60678286-60689453;chr15:60689538-60690141,chr15:60689538-60690069		chr15:60689454-60689537			4.18	3.98	3.18	10.91	5.73	10.71	7.36	7.01	6.23	6.29	4.04	7.00	7.09	8.10	5.32	9.44	3.34	5.22	7.32	6.37	7.62	9.52	6.03	10.06	3.33	6.79	5.23	12.09	8.83	12.64	3.69	3.80	2.63	5.87	5.13	6.25	5.54	6.58	1.04	0.533276	0.808279
K	alternative_first_exon	HOMER3	chr19	-	chr19:19043855-19049161	chr19:19043855-19045111	chr19:19049162-19049293	chr19:19045112-19045219			100.00	100.00	100.00	100.00	98.35	100.00	100.00	100.00	100.00	100.00	99.07	100.00	97.67	92.31	NA	95.92	99.14	96.30	100.00	96.15	100.00	97.22	98.20	100.00	96.79	100.00	100.00	97.73	100.00	100.00	100.00	100.00	98.20	100.00	98.78	100.00	99.10	100.00	0.90	0.640835	0.747175
N	jcn_only_AA	SLC39A13	chr11	+	chr11:47436711-47437875;chr11:47436711-47436838	chr11:47436711-47436948		chr11:47436839-47436948;chr11:47436949-47437875	chr11:47436948-47436949;chr11:47437875-47437876		0.00	0.00	0.00	0.00	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	INO80E	chr16	+	chr16:30008182-30010590;chr16:30008182-30009102;chr16:30008182-30012063	chr16:30008182-30012078		chr16:30009103-30010590;chr16:30010591-30012063;chr16:30012064-30012078	chr16:30010590-30010591;chr16:30012063-30012064;chr16:30012078-30012079		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	NA	92.00	100.00	100.00	100.00	100.00	NA	92.86	100.00	100.00	100.00	96.97	100.00	100.00	100.00	0.00	0.769171	0.896803
K	intron_retention		chr7	+	chr7:26241447-26242590				chr7:26241446-26241447;chr7:26242590-26242591		6.73	10.53	7.32	NA	0.00	NA	2.22	2.17	0.85	1.09	1.27	0.00	2.22	0.00	3.09	1.33	1.73	0.00	0.00	5.43	3.33	8.57	11.29	14.29	NA	6.67	5.68	4.17	9.30	0.00	7.32	8.93	4.76	2.86	7.27	6.45	2.22	6.05	3.83	0.919162	1.000000
N	coord_cassette	NANS	chr9	+	chr9:100823280-100843097	chr9:100823280-100837851;chr9:100838015-100839199;chr9:100839300-100840343;chr9:100840630-100843097		chr9:100837852-100838014;chr9:100839200-100839299;chr9:100840344-100840629			100.00	92.11	100.00	95.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	92.31	100.00	100.00	96.08	100.00	100.00	100.00	92.86	90.48	93.06	94.44	100.00	96.88	95.56	100.00	94.51	100.00	100.00	0.00	0.585913	0.759458
K	alternative_last_exon	PDLIM7	chr5	-	chr5:176916843-176917870,chr5:176917029-176917870,chr5:176916830-176917870,chr5:176917101-176917870;chr5:176916834-176917870,chr5:176917033-176917870	chr5:176917595-176917870	chr5:176916772-176916833	chr5:176917247-176917594			46.09	67.57	35.56	51.72	46.15	87.27	38.71	53.33	31.82	41.18	21.13	42.86	48.00	43.24	31.25	29.73	23.23	42.31	75.00	44.79	50.00	47.06	41.67	57.14	87.10	48.08	41.18	42.86	33.77	64.29	57.73	39.42	81.08	47.62	43.90	54.76	71.28	47.09	-24.20	0.077591	0.281549
K	intron_retention	MYO9B	chr19	+	chr19:17322596-17322703				chr19:17322595-17322596;chr19:17322703-17322704		89.80	88.89	86.36	78.57	89.01	82.76	66.67	NA	61.54	70.59	70.00	NA	80.77	69.23	61.90	75.00	84.21	75.00	87.50	84.21	69.57	85.90	84.58	81.01	81.67	65.00	83.33	80.00	87.42	74.07	81.13	80.43	89.47	84.81	87.10	73.68	84.59	81.13	-3.46	0.929887	1.000000
K	coord_cassette	CD4	chr12	+	chr12:6898829-6923307	chr12:6898829-6908703;chr12:6908790-6909237;chr12:6909354-6909472;chr12:6909638-6923307		chr12:6908704-6908789;chr12:6909238-6909353;chr12:6909473-6909637			94.87	91.84	76.79	NA	100.00	NA	91.80	95.89	94.83	95.50	94.78	99.19	89.46	97.37	88.89	96.55	90.68	97.78	NA	94.29	NA	96.10	94.19	98.09	76.67	100.00	74.00	100.00	90.80	100.00	100.00	84.62	66.67	96.15	90.12	94.96	89.46	96.63	7.17	0.050177	0.643829
K	intron_retention	RMDN1	chr8	-	chr8:87487183-87489522				chr8:87487182-87487183;chr8:87489522-87489523		8.70	15.69	14.71	13.33	5.26	16.67	4.17	0.00	0.00	0.00	0.00	0.00	6.45	0.00	3.23	0.00	4.26	0.00	14.29	5.26	8.16	NA	4.17	NA	37.29	0.00	3.03	0.00	2.78	5.26	14.29	10.53	15.00	0.00	8.33	12.50	14.64	2.63	-12.02	0.525828	1.000000
K	intron_retention		chr1	-	chr1:36788327-36788571				chr1:36788326-36788327;chr1:36788571-36788572		2.22	4.72	2.63	6.25	4.55	8.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	3.41	2.86	2.17	33.33	9.33	17.65	2.63	3.45	2.94	12.50	3.23	3.85	9.80	2.27	3.30	15.38	0.00	13.33	2.96	2.54	-0.42	0.721966	1.000000
N	cassette	TM4SF19,TM4SF19-TCTEX1D2	chr3	-	chr3:196051312-196054260;chr3:196050869-196065134;chr3:196051312-196065134;chr3:196050869-196054260	chr3:196050869-196053825,chr3:196051312-196053825;chr3:196053904-196065134,chr3:196053904-196054260		chr3:196053826-196053903			77.78	75.00	NA	76.56	63.64	76.92	63.91	86.49	80.56	66.47	63.12	62.87	69.84	94.44	90.00	69.44	65.79	71.43	76.47	100.00	74.38	78.44	75.76	82.72	66.67	72.00	NA	68.67	65.96	71.19	87.18	90.00	77.08	81.46	72.73	77.27	72.42	86.84	14.42	0.015421	0.369835
N	alternative_acceptor	KLC1,RP11-73M18.2	chr14	+	chr14:104143861-104145720;chr14:104143861-104145744	chr14:104143861-104145645		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		0.00	0.00	3.39	7.14	1.49	3.92	6.12	3.39	1.82	4.00	3.33	0.00	3.03	8.11	2.78	4.41	2.56	2.33	2.08	2.22	2.78	0.00	3.64	0.00	0.00	3.23	1.61	4.76	4.55	4.65	0.00	2.90	0.00	1.32	6.45	2.56	1.04	2.73	1.69	0.559678	0.828694
K	cassette	PPP2R3C	chr14	-	chr14:35560414-35565763	chr14:35560414-35564253;chr14:35564391-35565763		chr14:35564254-35564390			94.34	100.00	95.77	100.00	90.20	100.00	100.00	98.18	95.83	100.00	97.14	100.00	100.00	95.92	100.00	100.00	93.75	100.00	95.65	96.72	91.49	93.75	95.59	95.24	100.00	96.05	96.15	100.00	96.55	95.83	90.70	93.15	92.86	93.10	98.15	97.18	100.00	95.98	-4.02	0.124601	0.709176
N	jcn_only_AD	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295843-71297631;chr2:71295467-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71295972-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		0.00	0.00	0.00	0.00	0.00	0.00	1.88	2.09	0.00	0.00	0.00	0.00	1.68	1.15	0.00	0.00	0.00	0.00	2.53	0.58	0.00	0.00	0.83	3.08	5.66	1.94	0.00	0.00	1.69	1.50	2.88	0.00	0.00	0.00	0.00	2.25	1.78	1.54	-0.23	0.603620	0.805858
N	cassette	ST14	chr11	+	chr11:130068314-130068841	chr11:130068314-130068402;chr11:130068517-130068841		chr11:130068403-130068516			95.65	100.00	100.00	NA	95.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.14	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.20	NA	NA	100.00	100.00	93.75	98.04	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.783103	0.935383
K	jcn_only_AA	PCM1,PDLIM2	chr8	+	chr8:17872350-17882869	chr8:17872350-17873209		chr8:17873210-17882869	chr8:17882869-17882870		6.67	3.66	0.00	0.00	0.00	4.35	0.00	10.00	0.00	NA	0.00	NA	0.00	NA	9.09	12.50	0.00	NA	1.49	11.11	0.00	0.00	3.70	0.00	2.70	0.00	1.75	0.00	2.27	0.00	4.00	4.65	0.00	5.41	0.00	4.17	0.74	6.67	5.92	0.065429	0.663989
N	jcn_only_AD	NDUFS3,PTPMT1	chr11	+	chr11:47574259-47587457;chr11:47587349-47587457	chr11:47573986-47587457		chr11:47573986-47574258;chr11:47574259-47587348	chr11:47573985-47573986;chr11:47574258-47574259		12.24	0.00	29.17	0.00	0.00	0.00	0.00	2.78	11.54	0.00	0.00	0.00	0.00	5.41	10.64	0.00	0.00	0.00	4.44	10.00	11.96	0.00	0.00	0.00	0.00	22.58	32.50	0.00	0.00	0.00	18.52	29.55	2.94	0.00	0.00	0.00	0.00	11.12	11.12	0.016865	0.307491
K	jcn_only_AD	TMEM205	chr19	-	chr19:11456305-11456802;chr19:11456305-11456683	chr19:11456305-11456883		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		1.75	0.00	1.99	0.00	0.00	8.82	4.00	0.00	1.79	4.44	3.77	6.00	1.79	0.00	3.30	2.04	8.57	0.00	4.55	6.82	3.73	4.26	4.35	7.89	0.00	0.00	3.10	7.89	7.46	2.94	7.32	3.33	5.08	9.52	3.57	4.88	2.90	0.88	-2.02	0.964393	0.981627
N	jcn_only_AA	ENTPD6	chr20	+	chr20:25204794-25205840;chr20:25204794-25205821	chr20:25204794-25205797		chr20:25205798-25205821;chr20:25205822-25205840	chr20:25205821-25205822;chr20:25205840-25205841		45.00	50.00	40.62	NA	40.91	NA	25.86	33.96	32.69	23.81	19.15	30.77	31.11	36.36	30.19	34.48	14.63	25.00	41.18	47.62	36.36	52.38	42.00	53.85	38.46	31.11	27.27	26.92	38.10	25.00	53.33	42.11	33.33	47.83	44.19	52.78	35.89	40.68	4.79	0.379020	0.663989
N	jcn_only_AA		chr14	+	chr14:105179647-105179785	chr14:105179647-105179781		chr14:105179782-105179785	chr14:105179785-105179786		100.00	90.62	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	88.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	92.86	100.00	100.00	100.00	100.00	97.50	100.00	100.00	0.00	0.556585	0.789398
N	jcn_only_AD	P3H1	chr1	-	chr1:43212524-43212923;chr1:43212524-43212741	chr1:43212524-43212942		chr1:43212742-43212923;chr1:43212924-43212942	chr1:43212923-43212924;chr1:43212942-43212943		91.67	92.54	83.33	100.00	91.18	92.86	88.24	NA	64.71	75.00	80.00	NA	85.71	NA	73.68	83.33	83.33	NA	80.56	93.33	84.62	NA	83.33	NA	83.33	76.92	83.33	NA	87.50	90.91	95.24	100.00	91.53	100.00	91.30	88.24	86.97	92.50	5.53	0.641213	0.818639
K	jcn_only_AA	CHURC1,CHURC1-FNTB	chr14	+	chr14:65390845-65392727	chr14:65390845-65392724		chr14:65392725-65392727	chr14:65392727-65392728		14.89	4.84	16.13	13.51	10.81	13.64	15.00	9.33	15.00	31.43	15.22	23.08	20.00	16.39	14.29	14.00	33.33	27.59	6.06	7.89	13.04	16.67	13.73	8.82	6.90	11.76	16.67	22.73	9.09	18.87	5.26	14.93	8.77	18.92	19.30	15.15	7.83	10.54	2.71	0.830563	0.932795
K	alternative_acceptor	DEF8	chr16	+	chr16:90021675-90023880;chr16:90021675-90023918	chr16:90021675-90023948		chr16:90023881-90023918;chr16:90023919-90023948	chr16:90023918-90023919;chr16:90023948-90023949		2.38	0.00	0.00	3.33	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	SRSF5	chr14	+	chr14:70237258-70237711				chr14:70237257-70237258;chr14:70237711-70237712		5.31	5.49	2.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.74	0.00	0.00	0.00	4.04	0.81	4.24	3.25	5.88	0.00	1.89	2.26	0.85	0.72	0.00	7.29	4.62	2.22	5.71	4.62	4.32	0.00	2.96	2.96	0.639999	1.000000
K	coord_cassette	DHRS4	chr14	+	chr14:24429213-24436419	chr14:24429213-24435140;chr14:24435193-24435491;chr14:24435627-24436419		chr14:24435141-24435192;chr14:24435492-24435626			NA	0.00	NA	NA	3.85	0.00	49.09	67.86	66.67	39.47	53.33	50.00	61.11	64.71	54.55	46.15	37.74	40.74	26.92	38.46	37.50	15.79	30.23	29.41	28.57	53.85	50.00	47.62	42.86	50.00	40.00	50.00	32.00	35.14	35.00	50.00	30.29	53.85	23.57	0.090263	0.643829
N	alternative_donor	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610967-242611605;chr2:242610821-242611605	chr2:242610841-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		1.89	2.16	10.17	2.17	3.85	1.89	2.56	0.00	7.41	9.09	5.41	0.00	8.00	10.53	4.00	3.57	3.45	NA	2.80	0.00	10.13	10.53	6.25	6.25	4.85	4.17	11.94	6.67	8.47	14.81	8.06	6.25	2.61	8.33	11.67	16.39	2.71	3.03	0.32	0.893394	0.977754
K	alternative_last_exon	RMDN1	chr8	-	chr8:87480653-87487048;chr8:87482640-87487048	chr8:87484709-87487048,chr8:87486588-87487048	chr8:87482447-87482639	chr8:87484582-87484708			84.62	100.00	85.19	100.00	92.59	100.00	90.91	90.91	94.74	NA	87.50	NA	92.00	NA	93.75	NA	91.67	NA	97.56	70.59	97.44	NA	77.78	NA	100.00	83.33	70.97	90.00	85.00	91.67	90.91	91.67	96.97	NA	89.47	83.33	97.27	84.62	-12.64	0.026649	0.217248
N	alternative_acceptor	STX18	chr4	-	chr4:4425315-4426890	chr4:4425934-4426890		chr4:4425315-4425933	chr4:4425314-4425315		8.33	13.33	11.11	NA	0.00	NA	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	2.00	2.17	0.00	0.00	4.35	0.00	4.76	2.63	4.00	NA	6.90	4.35	4.76	2.17	3.45	0.00	3.12	NA	4.88	6.67	5.56	0.00	2.17	2.17	0.985823	0.995150
K	intron_retention		chr3	+	chr3:52549523-52550058				chr3:52549522-52549523;chr3:52550058-52550059		18.58	39.17	25.96	0.00	8.86	8.33	2.42	1.10	0.00	0.00	1.90	0.00	3.70	3.90	1.37	0.23	2.09	0.00	30.00	12.50	NA	4.29	13.37	4.47	34.14	3.19	16.36	1.35	9.55	1.08	4.35	5.56	30.00	4.93	11.71	3.18	30.00	4.12	-25.88	0.131164	1.000000
N	jcn_only_AA	DOCK10	chr2	-	chr2:225635056-225635261	chr2:225635067-225635261		chr2:225635056-225635066	chr2:225635055-225635056		100.00	93.75	98.15	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.72	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	98.44	99.16	100.00	100.00	100.00	0.00	0.717429	0.875250
K	intron_retention	KIAA0226L	chr13	-	chr13:46918967-46919581				chr13:46918966-46918967;chr13:46919581-46919582		5.88	0.00	2.69	1.87	2.94	0.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.35	1.59	3.23	8.33	4.17	NA	0.00	0.43	0.00	0.00	0.00	6.82	3.36	0.00	2.94	3.57	4.20	0.00	0.68	0.68	0.265041	1.000000
N	jcn_only_AD	TNFRSF14	chr1	+	chr1:2487472-2488023;chr1:2485752-2488023;chr1:2487692-2488023;chr1:2487701-2488023	chr1:2487290-2488023		chr1:2485752-2487289;chr1:2487290-2487471;chr1:2487472-2487691;chr1:2487692-2487700	chr1:2485751-2485752;chr1:2487289-2487290;chr1:2487471-2487472;chr1:2487691-2487692		22.22	0.00	0.00	7.69	5.88	NA	14.29	NA	NA	9.52	8.82	0.00	10.87	7.69	NA	3.85	9.09	0.00	0.00	15.38	26.67	0.00	6.06	0.00	0.00	NA	18.18	6.38	8.70	12.50	20.00	NA	NA	11.11	9.38	11.43	0.00	17.69	17.69	0.040843	0.474876
N	alternative_acceptor	XPC	chr3	-	chr3:14187114-14188789;chr3:14187660-14188789	chr3:14188169-14188789		chr3:14187114-14187659;chr3:14187660-14188168	chr3:14187113-14187114;chr3:14187659-14187660		2.50	3.33	5.38	5.88	2.38	NA	3.45	0.00	2.38	NA	5.56	NA	3.57	7.14	2.17	7.69	5.26	NA	2.27	5.41	1.67	4.55	4.65	6.25	3.70	2.63	2.38	6.67	3.70	9.09	7.02	4.79	3.45	6.25	5.00	9.76	3.45	4.02	0.57	0.518214	0.804520
K	intron_retention		chr15	+	chr15:75632220-75632305				chr15:75632219-75632220;chr15:75632305-75632306		6.86	5.65	9.46	6.93	6.75	5.70	0.00	0.00	0.00	0.00	0.00	0.00	1.40	1.67	2.17	1.39	0.81	1.79	5.57	5.56	3.70	4.00	6.06	8.33	4.99	6.33	4.05	7.50	3.60	3.80	8.75	7.06	4.93	5.66	4.49	6.25	4.96	5.95	0.99	0.905053	1.000000
K	intron_retention	RAD23A	chr19	+	chr19:13059974-13060088				chr19:13059973-13059974;chr19:13060088-13060089		16.13	11.36	16.28	6.67	14.29	7.14	0.00	0.00	0.00	0.00	1.35	0.00	1.54	0.00	0.00	2.25	2.27	0.00	4.35	10.00	7.32	12.12	11.48	15.62	0.00	3.12	5.00	4.76	9.09	9.68	5.71	13.04	18.52	8.33	10.20	8.93	2.94	4.42	1.47	0.995717	1.000000
K	alternative_acceptor	SCYL1	chr11	+	chr11:65305352-65305474	chr11:65305352-65305437		chr11:65305438-65305474	chr11:65305474-65305475		95.24	89.00	100.00	95.12	93.02	88.14	100.00	89.66	91.67	100.00	92.31	100.00	90.32	96.30	95.56	88.00	100.00	86.96	91.18	100.00	88.46	91.30	100.00	100.00	90.32	100.00	94.00	100.00	100.00	89.58	87.76	79.63	92.86	100.00	100.00	100.00	90.75	95.77	5.02	0.362113	0.709013
K	alternative_acceptor	CASP1	chr11	-	chr11:104905202-104905833;chr11:104905116-104905833	chr11:104905430-104905833		chr11:104905116-104905201;chr11:104905202-104905429	chr11:104905115-104905116;chr11:104905201-104905202		6.96	5.88	9.43	4.35	7.14	NA	5.13	3.88	1.50	4.48	1.16	4.07	5.48	3.39	1.98	4.72	4.55	3.33	NA	6.32	5.00	3.57	5.45	4.00	0.00	5.22	8.70	3.36	4.84	2.38	4.00	7.77	NA	2.74	5.56	5.44	5.30	4.61	-0.70	0.605759	0.848883
N	jcn_only_AA	ATP13A1	chr19	-	chr19:19756376-19756455;chr19:19756342-19756455	chr19:19756321-19756455		chr19:19756321-19756341;chr19:19756342-19756375	chr19:19756320-19756321;chr19:19756341-19756342		1.28	0.00	0.00	0.00	2.97	5.05	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	3.19	0.00	7.89	0.00	1.51	0.00	0.00	0.00	3.39	3.57	1.95	3.23	6.12	4.76	0.00	3.26	0.00	3.08	0.71	2.56	2.00	0.00	0.35	0.00	-0.35	0.931700	0.977987
K	intron_retention	IRF9	chr14	+	chr14:24630548-24631352				chr14:24630547-24630548;chr14:24631352-24631353		1.49	0.00	4.65	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.74	0.00	0.00	2.78	0.00	0.00	0.00	0.00	1.47	0.00	0.00	3.45	3.33	NA	0.00	5.41	0.00	0.00	0.74	0.74	0.353861	1.000000
K	intron_retention		chr2	+	chr2:242610198-242610726				chr2:242610197-242610198;chr2:242610726-242610727		11.54	9.18	6.78	3.03	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	1.27	6.06	3.95	0.00	3.12	4.76	0.00	9.68	13.64	8.33	8.62	13.04	6.12	9.21	2.22	10.20	7.41	10.64	0.64	6.09	5.46	0.561026	1.000000
K	intron_retention	NAPRT	chr8	-	chr8:144658333-144658601				chr8:144658332-144658333;chr8:144658601-144658602		11.86	12.41	30.00	23.81	20.37	14.71	0.00	0.00	8.00	0.00	0.00	0.00	4.65	0.00	6.45	0.00	2.33	0.00	13.73	17.95	14.04	16.67	13.95	10.00	16.45	9.38	24.53	20.00	8.33	35.00	21.57	20.29	18.38	17.24	12.20	20.00	13.07	10.62	-2.45	0.986086	1.000000
N	alternative_donor	SH3BP5-AS1	chr3	+	chr3:15302392-15305802;chr3:15301826-15305802;chr3:15302090-15305802	chr3:15302094-15305802		chr3:15301826-15302089;chr3:15302090-15302093;chr3:15302094-15302391	chr3:15301825-15301826;chr3:15302089-15302090;chr3:15302093-15302094		4.35	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	7.14	3.23	6.67	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	3.85	4.55	6.67	0.00	0.00	0.00	0.391002	0.657675
N	jcn_only_AD	LIPA	chr10	-	chr10:91007407-91011461;chr10:91007407-91011463;chr10:91007407-91011493;chr10:91007407-91010954;chr10:91007407-91011213;chr10:91007407-91020202;chr10:91007407-91010941;chr10:91007407-91010367	chr10:91007407-91009753		chr10:91009754-91010367;chr10:91010368-91010941;chr10:91010942-91010954;chr10:91010955-91011213;chr10:91011214-91011461;chr10:91011462-91011463;chr10:91011464-91011493;chr10:91011494-91020202	chr10:91010367-91010368;chr10:91010941-91010942;chr10:91010954-91010955;chr10:91011213-91011214;chr10:91011461-91011462;chr10:91011463-91011464;chr10:91011493-91011494;chr10:91020202-91020203		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr10	+	chr10:104158281-104158495				chr10:104158280-104158281;chr10:104158495-104158496		13.85	20.00	15.83	8.70	6.12	11.48	1.96	1.40	1.28	1.05	1.54	0.60	0.00	1.79	2.85	1.25	1.18	0.57	15.79	11.95	8.49	11.05	14.85	13.56	36.84	8.05	11.97	6.49	9.84	5.87	13.95	17.14	21.74	18.40	14.29	14.32	17.89	10.00	-7.89	0.489987	1.000000
N	cassette	CCT4	chr2	-	chr2:62095842-62099216	chr2:62095842-62096574;chr2:62096689-62099216		chr2:62096575-62096688			98.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	CIB1	chr15	-	chr15:90776441-90776900;chr15:90775578-90776900;chr15:90775660-90776900;chr15:90775560-90776900	chr15:90775680-90776900		chr15:90775560-90775577;chr15:90775578-90775659;chr15:90775660-90775679;chr15:90775680-90776440	chr15:90775559-90775560;chr15:90775577-90775578;chr15:90775659-90775660;chr15:90775679-90775680		2.11	0.45	6.83	0.00	1.79	1.45	0.00	0.95	0.78	0.00	0.00	0.00	0.62	0.00	1.89	0.00	0.00	0.00	2.78	1.02	2.37	2.86	4.05	3.28	1.09	5.56	5.38	1.23	3.11	2.41	5.32	3.51	3.85	4.17	3.81	4.31	0.85	1.56	0.71	0.396375	0.713475
K	intron_retention		chr14	+	chr14:104167065-104167537				chr14:104167064-104167065;chr14:104167537-104167538		3.51	1.27	0.00	1.79	3.00	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.77	5.26	1.41	0.00	3.20	1.72	1.37	0.00	2.56	2.44	3.77	0.00	2.08	2.56	2.27	1.92	1.59	0.86	-0.73	0.973602	1.000000
K	intron_retention		chr19	+	chr19:14518822-14518903				chr19:14518821-14518822;chr19:14518903-14518904		8.11	1.12	2.44	0.00	8.06	1.85	0.00	1.22	2.33	1.17	0.82	0.79	1.27	0.00	1.52	0.00	0.93	0.00	5.88	0.00	1.25	4.55	7.27	0.00	3.75	5.88	3.12	0.00	2.94	0.00	3.77	3.53	8.97	0.00	0.00	1.54	2.51	2.50	-0.01	0.664991	1.000000
K	intron_retention	FLNA	chrX	-	chrX:153578236-153578398				chrX:153578235-153578236;chrX:153578398-153578399		2.22	1.64	4.24	1.51	1.96	0.40	0.00	0.23	0.00	0.10	0.10	0.00	0.00	0.52	0.39	0.00	0.11	0.00	1.23	3.23	1.75	2.63	2.85	1.32	0.87	2.52	1.62	1.10	0.67	0.66	5.57	5.54	1.64	1.91	2.53	1.34	1.05	2.37	1.32	0.317042	1.000000
N	alternative_donor	C7orf31,PLOD3	chr7	-	chr7:100851006-100852133	chr7:100851006-100851104		chr7:100851105-100852133	chr7:100852133-100852134		2.44	3.09	4.35	3.12	2.33	0.00	0.83	0.00	0.00	0.00	2.25	0.00	1.24	2.44	4.00	0.76	1.75	0.00	2.74	2.50	2.33	3.85	5.17	2.08	2.04	3.33	3.45	3.12	3.88	1.92	0.00	0.00	1.04	2.82	4.94	1.94	1.64	2.44	0.80	0.949963	0.984606
K	alternative_acceptor	PLXNB2	chr22	-	chr22:50722643-50723001	chr22:50722674-50723001		chr22:50722643-50722673	chr22:50722642-50722643		2.25	2.00	3.23	NA	0.00	NA	0.00	2.74	0.00	0.00	0.82	0.00	0.81	1.32	0.89	1.10	0.38	0.00	9.52	2.60	0.00	0.00	4.55	0.00	3.85	2.38	2.07	0.00	3.77	NA	4.00	4.29	6.06	2.17	3.12	1.45	2.92	2.49	-0.43	0.473469	0.775711
K	intron_retention	RHOC	chr1	-	chr1:113244318-113245227				chr1:113244317-113244318;chr1:113245227-113245228		89.74	76.56	83.50	84.62	78.00	81.35	83.08	81.40	83.95	75.17	81.69	74.79	86.25	89.38	82.35	86.61	75.29	73.91	77.55	73.96	73.23	80.19	78.05	79.62	100.00	85.81	80.77	81.67	79.76	77.73	72.13	74.03	70.97	86.67	83.75	83.77	80.31	83.61	3.29	0.961594	1.000000
K	intron_retention	ARHGEF40	chr14	+	chr14:21555265-21555478				chr14:21555264-21555265;chr14:21555478-21555479		18.42	9.68	21.88	NA	16.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	10.00	NA	3.51	NA	0.00	17.39	15.38	NA	15.79	NA	NA	3.57	12.50	NA	10.34	NA	9.09	16.67	NA	NA	13.04	NA	0.00	6.33	6.33	0.488888	1.000000
K	intron_retention	EHBP1L1	chr11	+	chr11:65351237-65351711				chr11:65351236-65351237;chr11:65351711-65351712		28.75	33.33	31.25	18.18	17.24	18.18	2.63	1.25	6.38	2.50	0.00	0.00	5.08	6.93	7.81	2.56	1.79	0.00	30.43	39.66	16.67	26.67	16.33	45.45	27.03	37.50	32.35	27.27	13.89	12.12	30.56	35.00	32.14	23.08	27.50	26.67	28.73	29.66	0.93	0.965783	1.000000
N	jcn_only_AA	WDR91	chr7	-	chr7:134878152-134878329;chr7:134878099-134878329;chr7:134878230-134878329	chr7:134878096-134878329		chr7:134878096-134878098;chr7:134878099-134878151;chr7:134878152-134878229	chr7:134878095-134878096;chr7:134878098-134878099;chr7:134878151-134878152		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_donor	SP100	chr2	+	chr2:231331922-231333757	chr2:231331931-231333757		chr2:231331922-231331930	chr2:231331921-231331922		95.96	100.00	98.44	100.00	95.65	96.46	92.86	97.80	98.78	100.00	100.00	96.97	94.59	97.62	96.67	97.67	100.00	98.31	100.00	94.51	100.00	100.00	97.50	100.00	100.00	93.75	100.00	95.45	100.00	96.43	96.15	96.05	100.00	100.00	94.59	97.22	100.00	96.06	-3.94	0.233519	0.605820
K	intron_retention	IRF9,RP11-468E2.4	chr14	+	chr14:24635172-24635330				chr14:24635171-24635172;chr14:24635330-24635331		4.07	14.89	9.59	4.71	3.57	6.42	1.56	0.67	0.00	0.00	0.00	0.00	0.00	0.61	1.17	0.00	0.00	0.00	6.12	5.41	4.81	7.25	9.52	9.38	6.25	5.56	5.73	6.67	5.13	4.72	10.64	10.47	7.50	9.52	8.62	9.39	6.19	4.74	-1.45	0.817167	1.000000
K	intron_retention		chr10	+	chr10:45487451-45488716				chr10:45487450-45487451;chr10:45488716-45488717		8.93	16.22	10.98	6.67	6.67	NA	4.39	3.81	6.10	11.81	9.09	10.00	7.56	6.99	10.23	10.43	15.00	17.54	10.53	7.69	8.98	5.26	8.33	12.12	21.43	5.84	10.00	11.93	10.53	8.33	5.71	8.04	4.00	6.38	8.97	6.77	9.04	6.42	-2.63	0.639120	1.000000
K	intron_retention	EIF3A	chr10	-	chr10:120795496-120795542				chr10:120795495-120795496;chr10:120795542-120795543		100.00	100.00	96.30	100.00	100.00	100.00	95.12	88.89	96.08	95.59	96.55	100.00	98.28	95.65	100.00	98.40	100.00	100.00	95.65	100.00	97.44	99.04	100.00	100.00	100.00	100.00	93.10	94.92	98.53	98.18	94.87	100.00	92.59	95.15	100.00	97.14	96.97	97.83	0.86	0.989834	1.000000
N	alternative_acceptor	DRAM2	chr1	-	chr1:111674191-111680144	chr1:111674697-111680144		chr1:111674191-111674696	chr1:111674190-111674191		2.06	1.96	2.55	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.17	4.35	5.36	3.39	5.43	2.94	6.67	1.25	4.35	0.00	1.25	0.00	NA	1.59	0.86	0.00	1.20	0.00	0.00	1.43	NA	0.00	1.15	1.85	3.06	1.42	-1.65	0.349546	0.709013
N	jcn_only_AD	FRA10AC1	chr10	-	chr10:95430606-95431809;chr10:95430606-95431798;chr10:95430606-95431582;chr10:95430606-95436409	chr10:95430606-95435384					0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	6.67	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	LUC7L	chr16	-	chr16:239339-239979;chr16:239339-239966;chr16:239339-239945	chr16:239339-239929		chr16:239930-239945;chr16:239946-239966;chr16:239967-239979	chr16:239945-239946;chr16:239966-239967;chr16:239979-239980		26.83	12.82	11.11	21.65	20.51	14.69	18.75	NA	19.05	22.22	20.00	22.86	14.29	NA	18.52	13.89	16.00	27.27	21.90	20.00	18.82	11.11	18.52	17.95	11.00	30.43	9.76	12.20	12.77	21.05	24.39	15.00	18.89	13.64	27.03	17.86	16.52	25.61	9.09	0.015319	0.291468
K	intron_retention		chr11	-	chr11:6637735-6637891				chr11:6637734-6637735;chr11:6637891-6637892		3.33	0.00	11.90	NA	0.00	NA	0.43	0.00	0.38	0.28	0.84	0.00	0.81	0.92	0.75	0.48	0.50	0.00	NA	5.00	0.00	2.82	3.80	1.08	0.00	1.32	3.33	0.98	0.85	0.00	5.26	3.77	NA	3.70	5.68	1.97	0.21	2.33	2.11	0.418408	1.000000
K	intron_retention	RRAS	chr19	-	chr19:50139985-50140080				chr19:50139984-50139985;chr19:50140080-50140081		0.66	0.00	1.21	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.17	0.53	0.51	0.00	0.00	0.00	0.77	0.59	0.00	0.00	0.00	0.00	0.00	0.27	0.27	0.887837	1.000000
K	intron_retention	CXXC1	chr18	-	chr18:47811618-47811694				chr18:47811617-47811618;chr18:47811694-47811695		11.63	12.90	13.33	NA	8.70	NA	0.00	0.00	0.00	0.00	3.85	NA	3.12	0.00	0.00	0.00	8.33	NA	7.69	14.29	18.18	0.00	13.73	NA	NA	7.69	8.51	7.69	11.11	NA	16.67	16.13	13.33	14.29	16.67	25.00	7.69	9.66	1.97	0.995171	1.000000
K	cassette	HNRNPDL	chr4	-	chr4:83347283-83348342	chr4:83347283-83347615;chr4:83347787-83348342		chr4:83347616-83347786			89.80	91.30	87.36	92.31	97.14	86.84	97.53	91.30	90.59	96.17	97.13	94.87	97.50	95.08	92.14	95.72	97.69	91.03	91.07	79.17	89.19	94.55	96.85	88.98	85.42	88.24	92.68	94.68	96.81	92.68	71.43	90.48	85.33	93.58	96.67	89.90	91.19	89.02	-2.17	0.226520	0.709176
K	jcn_only_AA	SDHA	chr5	+	chr5:254622-256465	chr5:254622-256448		chr5:256449-256465	chr5:256465-256466		93.81	98.36	92.39	97.73	96.41	97.44	100.00	100.00	95.92	100.00	99.13	100.00	100.00	100.00	98.57	100.00	100.00	100.00	97.04	96.67	95.21	96.77	96.58	100.00	95.71	96.55	93.62	100.00	95.59	98.94	94.74	96.53	96.88	97.20	97.20	96.83	97.70	96.61	-1.09	0.439249	0.706094
K	alternative_acceptor	RBCK1	chr20	+	chr20:389424-390473;chr20:389424-390527	chr20:389424-390524		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		82.22	100.00	80.95	NA	100.00	84.62	86.21	96.97	89.23	85.71	91.30	96.00	82.14	90.43	96.97	90.48	95.65	93.22	NA	97.67	88.24	NA	90.91	91.43	100.00	91.07	100.00	100.00	100.00	88.06	84.85	100.00	NA	81.25	84.62	88.00	93.10	90.75	-2.35	0.781561	0.917646
N	alternative_acceptor	HGS	chr17	+	chr17:79651134-79652634	chr17:79651134-79651842		chr17:79651843-79652634	chr17:79652634-79652635		3.45	16.67	14.81	NA	NA	NA	3.03	2.17	0.00	1.69	2.70	0.00	2.22	1.89	4.84	2.13	2.50	0.00	NA	4.65	NA	6.45	9.09	8.16	9.52	7.89	8.51	6.67	15.38	4.17	3.45	6.25	NA	15.79	14.29	12.50	6.27	3.45	-2.82	0.329774	0.709013
K	intron_retention	C8orf59	chr8	-	chr8:86126861-86127149				chr8:86126860-86126861;chr8:86127149-86127150		0.00	0.00	0.00	2.94	2.41	3.57	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.53	0.00	2.44	0.00	2.17	5.26	0.00	0.00	0.00	0.00	0.00	3.12	0.00	4.35	1.28	4.55	5.88	6.25	0.00	0.00	0.00	0.480776	1.000000
K	jcn_only_AD	CNBP	chr3	-	chr3:128890382-128890497;chr3:128890382-128890476	chr3:128890382-128890494		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		4.59	0.00	1.70	4.17	4.29	NA	3.42	4.29	3.19	2.86	3.41	0.00	3.12	2.21	2.89	4.85	4.81	2.86	NA	2.38	6.45	2.76	3.95	2.70	NA	2.02	4.85	4.31	4.17	4.29	3.19	3.31	0.00	3.61	2.91	3.16	1.56	2.79	1.23	0.225260	0.657607
N	jcn_only_AD	PRICKLE4,TOMM6	chr6	+	chr6:41757071-41757268	chr6:41757075-41757268		chr6:41757071-41757074	chr6:41757070-41757071		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	97.70	100.00	99.10	95.24	97.73	98.18	100.00	100.00	98.35	100.00	100.00	100.00	97.47	93.18	100.00	100.00	95.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.676871	0.834613
K	intron_retention	GALK1	chr17	-	chr17:73754454-73754529				chr17:73754453-73754454;chr17:73754529-73754530		0.00	2.82	0.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.70	0.00	0.00	0.00	1.39	NA	3.85	NA	6.67	NA	5.56	0.00	5.00	NA	4.35	0.00	NA	0.00	1.72	NA	NA	NA	1.55	0.00	-1.55	0.455019	1.000000
K	alternative_first_exon	LLPH,RP11-745O10.4	chr12	-	chr12:66522894-66531830;chr12:66522894-66524235;chr12:66522894-66531743	chr12:66522894-66524484	chr12:66524236-66524482;chr12:66531744-66531909	chr12:66524485-66524548			19.57	10.84	15.28	20.37	15.29	15.94	14.93	21.88	30.19	45.05	37.40	33.33	18.31	23.86	27.00	58.65	35.43	44.59	12.35	20.99	15.22	39.68	23.40	27.42	16.88	22.39	14.88	32.35	30.07	38.18	27.78	12.90	13.85	36.99	30.99	24.36	14.39	22.13	7.74	0.000500	0.015511
K	intron_retention		chr2	+	chr2:219247794-219249041				chr2:219247793-219247794;chr2:219249041-219249042		93.27	100.00	94.74	NA	100.00	NA	93.65	96.40	92.45	100.00	100.00	100.00	92.65	91.84	100.00	93.18	96.08	97.83	NA	100.00	94.74	91.67	100.00	NA	100.00	90.77	95.60	100.00	100.00	NA	94.44	100.00	NA	100.00	100.00	100.00	96.83	93.85	-2.97	0.697938	1.000000
N	cassette	DCAF15	chr19	+	chr19:14070882-14071276	chr19:14070882-14071098;chr19:14071204-14071276		chr19:14071099-14071203			94.12	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	89.47	92.59	90.91	NA	93.55	NA	62.50	100.00	93.55	100.00	100.00	NA	82.76	84.85	78.95	91.30	100.00	100.00	94.73	97.06	2.33	0.378049	0.709410
K	intron_retention	HDLBP	chr2	-	chr2:242194574-242194788				chr2:242194573-242194574;chr2:242194788-242194789		12.90	0.00	6.67	NA	NA	NA	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	NA	0.00	10.00	3.12	1.89	5.77	16.67	7.14	5.66	0.00	7.14	0.00	7.69	13.95	NA	6.98	7.50	8.41	0.00	4.27	4.27	0.846235	1.000000
K	intron_retention	QARS	chr3	-	chr3:49137525-49137622				chr3:49137524-49137525;chr3:49137622-49137623		3.45	0.00	0.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	7.14	0.00	0.00	3.28	7.69	0.00	0.00	6.12	0.00	4.17	0.00	0.00	2.63	0.00	2.38	2.08	1.72	0.00	0.00	0.00	0.474652	1.000000
K	intron_retention	LBHD1	chr11	-	chr11:62432446-62432602				chr11:62432445-62432446;chr11:62432602-62432603		2.53	1.09	4.17	9.52	5.88	3.70	2.27	0.00	1.82	2.44	0.00	0.00	3.51	1.45	1.59	4.08	0.00	0.00	4.00	1.35	1.77	0.00	4.48	NA	3.70	1.28	5.68	0.00	3.70	0.00	5.81	7.29	8.82	4.35	5.88	0.00	3.60	1.40	-2.21	0.544166	1.000000
K	intron_retention	MAGED2	chrX	+	chrX:54837747-54838006				chrX:54837746-54837747;chrX:54838006-54838007		1.32	16.13	2.56	NA	0.00	NA	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.99	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	NA	0.00	2.53	0.00	0.00	0.00	0.00	1.49	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.632678	1.000000
N	alternative_acceptor	EIF2S2	chr20	-	chr20:32686431-32691267	chr20:32686440-32691267		chr20:32686431-32686439	chr20:32686430-32686431		95.24	100.00	98.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.67	100.00	96.15	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	98.11	98.11	100.00	100.00	0.00	0.193981	0.660713
K	cassette	RNF135	chr17	+	chr17:29298464-29314961;chr17:29298464-29324259	chr17:29298464-29311634;chr17:29311779-29314961,chr17:29311779-29324259		chr17:29311635-29311778			100.00	100.00	100.00	NA	97.73	NA	100.00	100.00	100.00	NA	98.11	NA	100.00	97.96	100.00	NA	100.00	NA	100.00	94.00	100.00	NA	100.00	NA	100.00	100.00	97.37	NA	100.00	NA	100.00	97.56	88.00	100.00	100.00	NA	100.00	100.00	0.00	0.775635	0.933202
K	jcn_only_AA	SLIRP	chr14	+	chr14:78182223-78183844;chr14:78182223-78183838	chr14:78182223-78183822		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		5.56	0.00	0.00	1.23	1.59	0.00	0.00	0.00	0.00	1.49	0.00	0.00	3.95	0.00	0.00	5.05	1.89	3.03	2.69	3.57	1.63	0.00	1.28	0.00	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	3.51	1.95	0.00	-1.95	0.847198	0.938257
N	alternative_acceptor		chr22	+	chr22:37707569-37708019;chr22:37707569-37708086	chr22:37707569-37708060		chr22:37708020-37708060;chr22:37708061-37708086	chr22:37708060-37708061;chr22:37708086-37708087		94.69	94.29	94.38	NA	91.18	NA	98.25	99.06	98.71	98.72	99.04	99.38	97.79	99.23	97.69	98.15	97.44	98.53	92.31	96.46	95.16	93.55	95.41	95.70	89.66	96.24	93.68	96.26	96.67	97.00	98.77	93.97	91.67	94.12	95.59	96.57	93.30	97.61	4.31	0.067285	0.584083
N	jcn_only_AA	UBE2J1	chr6	-	chr6:90039677-90042804	chr6:90039707-90042804		chr6:90039677-90039706	chr6:90039676-90039677		0.00	NA	0.00	3.28	0.00	7.32	0.00	1.65	1.94	0.76	2.99	1.10	0.00	1.38	2.04	0.00	1.65	0.00	0.00	4.23	0.00	2.47	4.35	3.81	0.00	5.71	0.00	2.11	0.00	3.08	0.00	4.76	NA	0.00	0.00	4.42	0.00	1.51	1.51	0.071993	0.663989
K	intron_retention		chr7	+	chr7:150835401-150837065				chr7:150835400-150835401;chr7:150837065-150837066		0.00	0.00	3.96	0.00	2.20	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.00	2.27	0.00	1.67	2.29	0.00	16.13	2.50	5.17	0.00	1.27	0.00	0.00	0.00	5.00	0.00	4.60	0.00	0.00	0.00	0.00	0.674357	1.000000
K	cassette	POLR3GL	chr1	-	chr1:145457605-145460096	chr1:145457605-145459651;chr1:145459782-145460096		chr1:145459652-145459781			100.00	95.45	94.44	NA	94.74	NA	95.45	100.00	100.00	NA	100.00	NA	100.00	95.00	100.00	NA	100.00	NA	83.33	95.24	89.47	NA	92.31	NA	NA	97.06	93.10	NA	95.65	NA	94.44	90.00	100.00	100.00	93.33	81.25	95.45	96.15	0.70	0.541830	0.813579
N	alternative_donor	SH3BP5-AS1	chr3	+	chr3:15302392-15305802;chr3:15301826-15305802;chr3:15302094-15305802	chr3:15302090-15305802		chr3:15301826-15302089;chr3:15302090-15302093;chr3:15302094-15302391	chr3:15301825-15301826;chr3:15302089-15302090;chr3:15302093-15302094		86.96	98.33	92.11	100.00	97.30	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	96.88	92.86	96.55	71.43	87.10	73.33	98.89	100.00	94.87	NA	100.00	NA	93.33	96.88	97.78	76.92	81.82	73.33	98.06	93.09	-4.96	0.176775	0.563271
K	intron_retention	AKAP8L	chr19	-	chr19:15491242-15491327				chr19:15491241-15491242;chr19:15491327-15491328		2.15	0.92	2.08	1.88	1.46	1.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.58	1.39	2.48	0.00	1.05	0.00	2.91	0.00	1.96	3.70	0.00	0.78	3.33	3.55	5.63	2.94	4.41	1.77	1.25	0.69	-0.56	0.953560	1.000000
N	alternative_acceptor	ADRBK1	chr11	+	chr11:67044820-67046670	chr11:67044820-67045266		chr11:67045267-67046670	chr11:67046670-67046671		2.78	7.69	3.26	NA	6.67	NA	0.68	0.00	0.00	0.00	0.96	0.00	0.54	1.75	0.86	0.00	0.75	NA	8.00	2.17	4.76	0.00	3.12	0.00	2.76	2.44	2.34	0.00	2.50	NA	6.25	3.30	6.67	2.86	6.90	0.00	4.71	2.30	-2.41	0.299687	0.709013
K	jcn_only_AA	NFE2L1	chr17	+	chr17:46128991-46133780	chr17:46128991-46133747		chr17:46133748-46133780	chr17:46133780-46133781		95.52	100.00	96.36	NA	NA	NA	90.00	92.31	92.38	93.59	91.60	91.49	94.29	93.06	93.92	91.49	91.23	91.38	NA	93.75	100.00	95.45	94.55	96.00	100.00	95.69	95.29	88.46	100.00	NA	100.00	97.10	NA	100.00	96.05	92.98	97.15	94.63	-2.51	0.722194	0.877224
K	jcn_only_AA	MRPL22	chr5	+	chr5:154320826-154330380	chr5:154320826-154330362		chr5:154330363-154330380	chr5:154330380-154330381		0.00	0.00	3.03	NA	0.00	NA	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	8.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.373901	0.663989
N	alternative_donor	ANKRD13D	chr11	+	chr11:67057918-67058946	chr11:67058188-67058946		chr11:67057918-67058187	chr11:67057917-67057918		17.95	20.00	12.66	NA	11.11	NA	0.00	0.00	0.00	NA	6.25	NA	3.23	0.00	0.00	NA	4.76	NA	18.18	12.00	0.00	NA	17.86	NA	52.94	0.00	6.25	NA	15.00	NA	7.69	20.00	25.00	NA	12.90	NA	19.09	3.85	-15.24	0.149058	0.563084
K	jcn_only_AA	APRT	chr16	-	chr16:88876115-88876477;chr16:88876316-88876477	chr16:88876249-88876477		chr16:88876115-88876248;chr16:88876249-88876315	chr16:88876114-88876115;chr16:88876248-88876249		81.25	72.31	87.10	61.86	73.73	73.86	81.77	100.00	90.32	62.50	61.94	64.38	75.56	85.71	86.25	72.34	60.71	68.06	70.18	75.00	75.33	67.80	71.32	69.23	71.37	NA	81.40	75.31	74.15	72.00	82.35	89.74	71.66	65.12	77.12	77.59	71.98	82.35	10.36	0.054400	0.663989
K	intron_retention	METTL17	chr14	+	chr14:21464111-21464367				chr14:21464110-21464111;chr14:21464367-21464368		8.82	8.57	12.00	0.00	3.80	0.00	0.00	NA	NA	0.00	5.88	0.00	2.86	NA	6.67	0.00	2.63	9.09	5.17	13.04	5.88	18.75	12.28	7.69	10.34	7.14	16.22	15.79	10.00	6.67	8.00	10.20	3.64	3.45	12.20	16.00	4.41	8.41	4.00	0.641321	1.000000
N	jcn_only_AA	AGAP3,SLC29A4	chr7	+	chr7:150825772-150831486;chr7:150825772-150828158	chr7:150825772-150827290		chr7:150827291-150828158;chr7:150828159-150831486	chr7:150828158-150828159;chr7:150831486-150831487		0.00	0.00	4.96	11.54	4.76	NA	0.00	8.11	3.92	10.17	8.00	0.00	3.70	0.00	5.00	11.58	6.10	15.38	0.00	5.13	0.00	4.17	2.10	0.00	0.00	6.67	1.37	6.25	2.15	0.00	0.00	2.33	0.00	11.46	4.30	5.36	0.00	2.56	2.56	0.148829	0.663989
K	alternative_donor	DCTN2	chr12	-	chr12:57926427-57926566	chr12:57926427-57926515		chr12:57926516-57926566	chr12:57926566-57926567		98.08	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	95.83	100.00	100.00	97.96	100.00	95.74	97.67	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	91.67	100.00	100.00	100.00	98.15	100.00	98.36	100.00	98.02	-1.98	0.037032	0.352241
K	intron_retention	LRP1	chr12	+	chr12:57598533-57598891				chr12:57598532-57598533;chr12:57598891-57598892		7.38	9.40	9.26	NA	4.00	NA	0.40	1.50	0.00	0.00	0.76	0.00	1.25	3.41	2.17	0.00	1.18	0.00	11.54	9.21	0.00	1.16	5.32	0.65	11.67	7.41	12.84	1.18	4.11	0.00	11.11	15.15	18.18	0.82	5.85	0.00	10.47	7.39	-3.07	0.676125	1.000000
N	alternative_acceptor	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401503-80402322	chr17:80401382-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		5.59	0.00	6.00	0.00	6.45	16.67	0.00	5.36	2.63	4.17	0.00	0.00	0.00	4.39	4.38	3.85	10.42	0.00	18.64	8.79	10.89	0.00	4.69	7.41	0.00	0.00	4.24	8.57	8.16	6.78	13.43	11.19	10.00	0.00	0.00	3.90	0.00	5.47	5.47	0.699024	0.886757
K	intron_retention	RP11-566K11.7	chr16	+	chr16:89972693-89973650				chr16:89972692-89972693;chr16:89973650-89973651		8.86	6.91	14.42	4.44	4.27	4.27	0.00	2.56	0.00	0.00	0.00	0.00	0.00	1.89	3.61	0.00	0.00	0.00	5.02	7.23	5.38	10.17	8.97	8.93	6.99	9.84	9.57	3.03	4.24	3.64	11.93	11.04	9.55	6.67	6.98	11.32	5.96	8.04	2.08	0.613009	1.000000
K	intron_retention	PREB	chr2	-	chr2:27354700-27354877				chr2:27354699-27354700;chr2:27354877-27354878		3.23	0.00	5.00	NA	5.26	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.00	0.00	0.00	3.03	6.67	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	4.00	12.12	2.86	0.00	0.00	0.00	0.594508	1.000000
N	cassette	HMGCL	chr1	-	chr1:24143261-24146999	chr1:24143261-24143965;chr1:24144074-24146999		chr1:24143966-24144073			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.96	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.35	100.00	100.00	100.00	NA	94.87	90.32	100.00	100.00	95.00	90.32	100.00	100.00	0.00	0.175330	0.709176
K	alternative_acceptor	SUPT5H	chr19	+	chr19:39936278-39936443;chr19:39936278-39936518	chr19:39936278-39936521		chr19:39936444-39936518;chr19:39936519-39936521	chr19:39936518-39936519;chr19:39936521-39936522		13.46	0.00	10.47	NA	16.67	NA	17.78	21.67	9.89	20.37	27.12	18.75	15.79	15.94	7.07	25.49	24.19	27.03	21.43	12.20	18.75	18.18	21.43	24.14	19.61	10.20	13.56	12.00	14.29	8.00	22.22	14.75	17.65	22.03	19.30	19.72	17.71	14.70	-3.02	0.883144	0.960219
N	jcn_only_AD	TPST2	chr22	-	chr22:26922234-26924179	chr22:26922234-26923571		chr22:26923572-26924179	chr22:26924179-26924180		0.00	0.00	0.00	5.45	5.19	6.06	0.00	0.00	0.00	2.82	0.00	0.00	0.48	0.00	0.00	0.00	1.14	3.39	2.29	0.00	2.73	5.00	1.95	0.00	0.00	0.00	3.08	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.24	0.00	-0.24	0.146896	0.657607
N	jcn_only_AD	HMGN3	chr6	-	chr6:79911444-79911992;chr6:79911444-79911785;chr6:79911444-79911810;chr6:79911444-79911772	chr6:79911444-79912033		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		71.43	63.12	46.34	49.09	59.17	54.55	62.81	57.69	43.94	46.85	47.31	42.94	59.38	36.00	48.28	54.02	48.70	52.55	61.95	43.75	58.04	67.35	60.34	56.94	56.88	45.00	42.19	60.81	55.17	55.47	36.84	50.00	63.27	56.25	51.25	58.33	62.38	44.38	-18.01	0.070983	0.604594
N	alternative_acceptor	LILRA5	chr19	-	chr19:54819028-54822683	chr19:54819034-54822683		chr19:54819028-54819033	chr19:54819027-54819028		100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.75	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	99.69	99.04	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177737	0.660713
N	alternative_acceptor	NABP1	chr2	+	chr2:192549023-192550324;chr2:192549023-192550156;chr2:192549023-192549598	chr2:192549023-192549602		chr2:192549599-192549602;chr2:192549603-192550156;chr2:192550157-192550324	chr2:192549602-192549603;chr2:192550156-192550157;chr2:192550324-192550325		6.96	0.00	9.88	3.51	0.00	4.65	1.33	3.97	2.74	2.27	0.76	3.00	2.17	3.18	4.63	2.37	0.00	2.29	0.00	8.76	2.17	6.50	4.00	10.76	NA	10.48	5.81	4.74	1.43	3.68	7.78	9.06	0.00	12.50	7.41	13.12	0.00	7.37	7.37	0.001987	0.314009
N	jcn_only_AD	CXorf38	chrX	-	chrX:40490026-40495784	chrX:40490026-40491033		chrX:40491034-40495784	chrX:40495784-40495785		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	ARRB2	chr17	+	chr17:4621319-4621555	chr17:4621412-4621555		chr17:4621319-4621411	chr17:4621318-4621319		4.44	7.53	5.00	0.00	1.45	0.00	0.39	0.32	0.72	0.27	0.29	0.00	0.69	0.44	2.05	0.44	0.32	0.00	1.39	2.17	2.46	0.00	2.83	0.98	14.71	2.37	3.31	1.95	1.38	0.66	2.70	3.69	4.55	2.61	2.61	0.43	2.97	2.27	-0.70	0.279432	0.648887
K	jcn_only_AA	CUX1,SLC4A2	chr7	+	chr7:101838884-101840219;chr7:101838884-101916636	chr7:101838884-101839913					3.03	0.00	4.23	NA	0.00	NA	5.56	17.65	25.00	19.57	13.46	18.52	16.67	32.35	32.14	16.22	15.00	9.76	0.00	0.00	0.00	9.09	4.35	4.76	0.00	6.12	6.90	0.00	0.00	0.00	0.00	0.00	0.00	11.63	4.55	3.37	0.00	4.58	4.58	0.329970	0.663989
K	intron_retention	RP11-44M6.7,SAP25	chr7	-	chr7:100170836-100170919				chr7:100170835-100170836;chr7:100170919-100170920		17.65	5.68	8.33	NA	23.53	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13.64	11.11	20.83	NA	6.25	NA	8.05	12.50	17.07	NA	NA	NA	10.00	21.74	10.64	NA	18.75	NA	9.35	11.80	2.46	0.814986	1.000000
K	coord_cassette	FNBP1	chr9	-	chr9:132671279-132687238	chr9:132671279-132678244;chr9:132678260-132686122;chr9:132686276-132687238		chr9:132678245-132678259;chr9:132686123-132686275			4.76	6.67	2.63	NA	0.00	NA	3.09	10.26	1.19	1.08	0.00	4.79	3.51	10.71	0.74	0.00	1.22	2.36	0.00	0.00	0.00	0.00	4.17	2.86	NA	0.00	0.00	10.00	7.14	6.25	0.00	0.00	9.09	0.00	0.00	2.47	3.51	2.38	-1.13	0.945672	0.972993
K	intron_retention	PTOV1	chr19	+	chr19:50361911-50363242				chr19:50361910-50361911;chr19:50363242-50363243		8.22	1.65	13.92	1.69	1.45	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.33	0.00	3.45	0.00	4.17	0.00	4.35	4.35	0.92	9.68	7.89	6.45	2.53	9.68	6.25	9.09	5.80	0.00	4.44	13.04	2.94	12.50	9.23	10.87	2.22	4.39	2.17	0.584918	1.000000
K	cassette	MVD	chr16	-	chr16:88722713-88723843	chr16:88722713-88723553;chr16:88723656-88723843		chr16:88723554-88723655			0.00	0.00	2.56	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	2.63	0.00	0.00	4.76	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	cassette	PPP1R12C	chr19	-	chr19:55607547-55610151	chr19:55607547-55607629;chr19:55607704-55610151		chr19:55607630-55607703			88.71	71.79	88.89	100.00	80.00	NA	100.00	100.00	96.43	100.00	100.00	100.00	97.96	96.00	100.00	100.00	100.00	100.00	88.89	87.50	92.86	85.71	95.83	88.24	100.00	100.00	93.15	91.30	94.74	88.24	95.00	89.71	83.33	90.32	88.89	86.49	93.42	95.50	2.08	0.437545	0.743097
K	cassette	FLNA	chrX	-	chrX:153581826-153582282	chrX:153581826-153581921;chrX:153582096-153582282		chrX:153581922-153582095			98.41	100.00	98.60	100.00	97.62	100.00	99.38	99.46	99.25	97.97	98.68	98.45	99.78	99.32	98.98	98.72	97.87	99.12	100.00	98.62	100.00	98.53	96.15	97.37	100.00	99.20	99.31	99.68	98.58	99.07	95.56	95.00	100.00	97.20	98.11	97.46	100.00	98.91	-1.09	0.061866	0.621473
N	cassette	NSFL1C	chr20	-	chr20:1438920-1457982;chr20:1438920-1447364	chr20:1438920-1444973;chr20:1445072-1447364,chr20:1445072-1457982		chr20:1444974-1445071			100.00	100.00	98.04	100.00	94.44	NA	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	98.00	98.73	100.00	100.00	100.00	95.56	96.77	100.00	95.45	100.00	100.00	96.15	92.11	100.00	100.00	100.00	94.87	95.65	100.00	97.62	97.44	100.00	100.00	98.08	-1.92	0.078488	0.641134
N	jcn_only_AD	QSOX1	chr1	+	chr1:180166012-180166467;chr1:180165930-180166467;chr1:180165735-180166467	chr1:180166026-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		27.45	23.46	27.53	20.00	23.19	25.00	31.43	27.40	31.44	18.75	21.74	17.65	29.82	32.23	31.72	30.00	20.34	17.14	32.81	28.06	26.10	24.00	25.00	14.29	41.46	28.05	30.15	35.00	21.05	19.44	26.77	26.84	29.73	13.04	21.15	24.24	30.62	27.75	-2.88	0.260864	0.657607
N	alternative_acceptor	IFI35	chr17	+	chr17:41164295-41164946;chr17:41164295-41165076;chr17:41164295-41165063	chr17:41164295-41164958		chr17:41164947-41164958;chr17:41164959-41165063;chr17:41165064-41165076	chr17:41164958-41164959;chr17:41165063-41165064;chr17:41165076-41165077		1.67	3.12	2.56	0.00	0.00	1.59	0.00	1.04	0.86	0.00	0.00	0.34	0.00	0.55	2.05	1.12	0.00	0.00	0.00	1.01	0.00	0.00	0.00	2.47	5.56	1.78	2.04	0.98	0.00	2.17	0.78	1.68	0.00	3.08	0.00	1.63	0.00	1.02	1.02	0.766630	0.913895
N	alternative_acceptor	SLC7A7	chr14	-	chr14:23239202-23243141;chr14:23242938-23243141	chr14:23242926-23243141		chr14:23239202-23242925;chr14:23242926-23242937	chr14:23239201-23239202;chr14:23242925-23242926		100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.55	95.65	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	95.65	100.00	94.74	100.00	100.00	100.00	98.28	100.00	1.72	0.376583	0.709013
K	intron_retention	RP11-867G23.4	chr11	-	chr11:66044496-66044639				chr11:66044495-66044496;chr11:66044639-66044640		98.72	97.05	96.70	94.15	93.72	94.31	97.56	100.00	98.20	96.07	97.60	100.00	98.23	95.98	96.52	97.92	96.79	97.66	95.34	93.53	97.33	94.69	91.82	94.12	100.00	97.62	100.00	94.01	94.65	95.71	96.81	96.59	96.44	95.21	95.83	100.00	97.31	97.22	-0.09	0.945849	1.000000
N	cassette	MYO1F	chr19	-	chr19:8604913-8609180	chr19:8604913-8606789;chr19:8606876-8609180		chr19:8606790-8606875			98.71	99.10	97.89	NA	100.00	NA	98.48	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	96.72	100.00	100.00	98.08	100.00	91.80	100.00	97.57	100.00	98.80	100.00	100.00	95.90	95.45	100.00	97.14	100.00	96.97	100.00	3.03	0.094727	0.658231
K	intron_retention	FAM160B2	chr8	+	chr8:21959042-21959218				chr8:21959041-21959042;chr8:21959218-21959219		13.64	47.83	17.24	NA	25.00	NA	7.69	0.00	0.00	NA	0.00	NA	4.76	0.00	0.00	0.00	0.00	NA	66.67	21.43	NA	NA	8.00	NA	63.64	27.27	31.82	NA	18.18	NA	NA	16.67	NA	0.00	11.76	0.00	47.83	13.64	-34.19	0.546467	1.000000
N	alternative_acceptor	RP11-805J14.5	chr11	-	chr11:70053041-70053164	chr11:70053098-70053164		chr11:70053041-70053097	chr11:70053040-70053041		100.00	100.00	86.36	100.00	76.09	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	88.89	100.00	88.46	NA	100.00	84.21	81.08	NA	87.50	NA	NA	88.00	100.00	84.62	100.00	100.00	85.19	75.00	78.79	69.23	100.00	100.00	100.00	94.00	-6.00	0.606214	0.848883
N	alternative_acceptor	HADHA	chr2	-	chr2:26414283-26414351;chr2:26414230-26414351	chr2:26414265-26414351		chr2:26414230-26414264;chr2:26414265-26414282	chr2:26414229-26414230;chr2:26414264-26414265		100.00	98.47	100.00	100.00	99.31	98.41	100.00	100.00	100.00	98.63	99.22	100.00	99.21	100.00	97.30	100.00	99.16	100.00	99.09	100.00	98.77	100.00	99.12	100.00	100.00	100.00	98.44	100.00	100.00	98.72	93.62	100.00	96.80	99.01	99.00	100.00	99.15	100.00	0.85	0.994515	0.998086
K	alternative_donor	BANF1	chr11	+	chr11:65769985-65770705	chr11:65770042-65770705		chr11:65769985-65770041	chr11:65769984-65769985		52.00	64.44	64.00	70.00	55.88	68.75	65.22	47.62	58.14	67.24	60.36	71.74	69.81	45.45	60.87	66.02	61.62	66.67	75.00	45.45	50.00	72.50	69.66	68.00	64.86	53.85	58.06	70.21	62.77	61.29	45.45	39.13	62.07	72.97	60.34	61.90	65.04	46.53	-18.50	0.000025	0.012298
K	intron_retention	CHPT1	chr12	+	chr12:102120183-102122678				chr12:102120182-102120183;chr12:102122678-102122679		41.67	13.16	18.75	12.12	14.58	10.00	5.00	7.69	8.70	7.14	7.89	19.23	14.58	23.08	11.76	11.54	28.95	27.78	12.37	26.67	20.51	13.04	19.64	14.81	15.38	54.55	20.00	12.90	12.00	5.13	25.00	31.82	15.13	19.15	25.58	14.29	13.87	25.84	11.96	0.394361	1.000000
N	jcn_only_AD	DTX2P1,DTX2P1-UPK3BP1-PMS2P11	chr7	+	chr7:76632767-76633534;chr7:76631639-76633534	chr7:76631664-76633534					NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention		chr1	+	chr1:161179722-161179900				chr1:161179721-161179722;chr1:161179900-161179901		3.28	8.11	7.34	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.00	2.04	0.00	1.59	0.00	0.00	0.00	5.00	0.00	1.27	5.00	0.00	0.00	5.56	5.13	5.38	0.00	1.96	2.70	3.80	0.00	1.43	1.43	0.943074	1.000000
N	cassette	PLXNB2	chr22	-	chr22:50722643-50724228	chr22:50722643-50723001;chr22:50723095-50724228		chr22:50723002-50723094			100.00	100.00	98.86	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.10	95.45	100.00	100.00	100.00	100.00	100.00	NA	95.24	97.25	92.31	100.00	99.05	96.30	100.00	100.00	0.00	0.753934	0.921996
N	jcn_only_AA		chr9	+	chr9:77732467-77741392;chr9:77732467-77742488	chr9:77732467-77742484		chr9:77741393-77742484;chr9:77742485-77742488	chr9:77742484-77742485;chr9:77742488-77742489		100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	99.70	99.53	100.00	99.64	99.64	99.29	100.00	98.83	100.00	100.00	100.00	98.15	100.00	100.00	NA	100.00	98.75	100.00	100.00	100.00	100.00	99.33	100.00	100.00	98.23	100.00	100.00	100.00	0.00	0.363217	0.663989
N	intron_retention		chr5	-	chr5:39372811-39373491				chr5:39372810-39372811;chr5:39373491-39373492		82.22	89.08	91.76	91.30	94.62	NA	95.76	100.00	94.59	100.00	94.59	NA	95.00	91.67	100.00	90.00	94.40	NA	92.68	73.91	90.70	91.18	84.96	NA	100.00	100.00	90.59	100.00	90.68	NA	100.00	79.37	100.00	86.90	85.84	80.00	95.38	95.84	0.46	0.949563	1.000000
K	jcn_only_AD	PABPC4	chr1	-	chr1:40029595-40030142	chr1:40029595-40030094		chr1:40030095-40030142	chr1:40030142-40030143		39.39	55.67	38.89	56.76	62.22	58.33	68.24	70.59	64.71	73.63	72.03	73.58	68.84	68.18	51.72	60.42	76.47	73.68	53.33	46.15	47.83	46.99	57.36	52.63	70.73	47.06	59.09	62.50	61.95	66.67	36.76	36.11	54.90	39.58	53.33	50.87	61.95	46.61	-15.35	0.157935	0.657607
K	alternative_last_exon	TCF25	chr16	+	chr16:89954126-89958518;chr16:89954126-89958600	chr16:89954126-89955635	chr16:89958601-89958683	chr16:89955636-89957041			2.33	5.13	5.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	2.78	4.35	0.00	1.56	3.12	4.55	0.00	4.17	0.00	0.00	0.00	3.12	1.61	9.52	3.57	3.45	3.12	4.84	1.17	-3.67	0.129226	0.341377
N	alternative_donor	CPT2	chr1	+	chr1:53676992-53678935;chr1:53678489-53678935	chr1:53676923-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		12.00	0.00	7.89	NA	0.00	NA	6.25	0.00	16.13	11.76	13.16	NA	0.00	0.00	0.00	0.00	12.50	NA	7.69	11.54	8.33	20.00	4.00	NA	0.00	6.90	9.30	13.33	15.38	20.00	0.00	10.00	7.14	0.00	6.67	12.12	3.12	3.45	0.33	0.599214	0.809588
N	alternative_donor	C1orf162	chr1	+	chr1:112019490-112019955	chr1:112019701-112019955		chr1:112019490-112019700	chr1:112019489-112019490		24.19	22.47	30.77	18.18	24.00	NA	11.40	4.55	10.00	10.42	8.02	6.78	16.54	12.50	NA	23.08	10.40	11.43	31.25	22.50	16.13	30.43	36.27	23.08	15.38	36.84	22.73	30.00	31.45	16.67	10.53	17.86	36.67	16.07	29.13	21.43	19.50	17.50	-2.00	0.559431	0.790811
K	intron_retention	GLA	chrX	-	chrX:100655746-100656619				chrX:100655745-100655746;chrX:100656619-100656620		6.83	0.00	8.29	4.55	2.27	0.00	6.41	8.84	4.26	8.08	9.47	8.57	8.89	8.66	8.89	12.06	9.22	11.11	5.26	6.25	1.67	5.99	6.06	8.07	0.00	8.92	6.49	6.67	5.19	6.29	9.64	8.98	7.89	12.50	6.47	11.44	5.83	8.75	2.92	0.522637	1.000000
N	jcn_only_AD	SGF29	chr16	+	chr16:28601540-28601616	chr16:28601547-28601616		chr16:28601540-28601546	chr16:28601539-28601540		100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	88.00	94.44	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	alternative_acceptor	MINK1,RAD51C	chr17	+	chr17:4800109-4800498	chr17:4800109-4800274		chr17:4800275-4800498	chr17:4800498-4800499		13.95	3.95	9.09	10.00	11.48	NA	4.26	0.00	0.00	0.00	3.51	0.00	2.44	0.00	5.13	3.33	3.57	NA	6.67	4.00	9.26	6.67	4.48	NA	17.39	5.00	7.35	5.56	6.45	0.00	13.33	13.92	9.76	7.14	10.71	5.13	5.46	4.50	-0.96	0.696385	0.885862
K	intron_retention	ANKRD13D	chr11	+	chr11:67067595-67068460				chr11:67067594-67067595;chr11:67068460-67068461		5.21	5.22	7.80	0.00	5.83	NA	6.45	0.00	4.00	NA	0.00	NA	4.35	0.00	6.67	NA	2.56	NA	7.09	4.84	8.22	0.00	6.67	0.00	2.52	3.70	4.90	NA	8.20	NA	2.78	7.41	6.54	6.25	6.58	0.00	5.83	3.24	-2.59	0.529567	1.000000
K	alternative_acceptor	CRNKL1	chr20	-	chr20:20018179-20018992	chr20:20018216-20018992		chr20:20018179-20018215	chr20:20018178-20018179		100.00	100.00	100.00	100.00	100.00	100.00	92.86	NA	100.00	100.00	100.00	100.00	94.74	NA	93.75	95.24	100.00	90.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	96.00	100.00	100.00	100.00	100.00	0.00	0.903348	0.967218
N	jcn_only_AD	VPS28	chr8	-	chr8:145650384-145651065;chr8:145650384-145650492	chr8:145650384-145651043		chr8:145650493-145651043;chr8:145651044-145651065	chr8:145651043-145651044;chr8:145651065-145651066		6.25	0.00	4.76	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	8.33	0.00	NA	0.00	0.00	0.00	0.00	3.23	NA	0.00	0.00	0.00	3.12	3.12	0.245285	0.657607
K	intron_retention	SET	chr9	+	chr9:131456088-131456174				chr9:131456087-131456088;chr9:131456174-131456175		3.03	0.00	2.87	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.53	4.48	3.23	0.00	1.01	0.00	0.00	1.50	1.50	0.552627	1.000000
N	cassette	RBM39	chr20	-	chr20:34297197-34300940;chr20:34297179-34300940	chr20:34297179-34298204,chr20:34297197-34298204;chr20:34298343-34300940		chr20:34298205-34298342			3.42	4.85	4.00	2.67	2.80	3.45	0.00	3.23	0.00	0.00	1.20	1.67	1.56	3.57	1.59	0.00	0.00	4.88	0.00	2.94	4.71	4.95	4.14	3.79	0.00	4.55	5.03	2.53	3.33	4.04	4.35	3.11	3.66	3.64	2.48	2.40	0.78	3.50	2.71	0.069724	0.624766
K	jcn_only_AA	PSMC5	chr17	+	chr17:61908296-61908395	chr17:61908296-61908379		chr17:61908380-61908395	chr17:61908395-61908396		0.00	0.00	0.00	2.78	1.45	3.85	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	1.43	3.03	0.61	0.00	2.75	0.00	0.00	0.00	1.54	1.39	0.00	3.39	2.99	2.40	0.00	1.61	1.06	5.80	0.00	0.00	0.00	0.299713	0.663989
N	alternative_donor	TIMMDC1	chr3	+	chr3:119217781-119219541;chr3:119217790-119219541	chr3:119217775-119219541		chr3:119217775-119217780;chr3:119217781-119217789	chr3:119217774-119217775;chr3:119217780-119217781		100.00	100.00	97.18	NA	100.00	NA	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	97.78	100.00	95.45	98.08	92.31	NA	100.00	98.21	100.00	97.44	100.00	100.00	100.00	NA	100.00	94.12	95.65	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	LGALS3BP	chr17	-	chr17:76968787-76969051				chr17:76968786-76968787;chr17:76969051-76969052		10.68	2.74	3.16	0.00	0.00	0.00	1.04	2.43	1.84	0.00	0.00	3.08	1.96	2.67	1.86	1.96	0.00	4.84	0.00	11.29	1.61	0.00	0.00	5.66	0.00	5.48	1.32	6.45	0.00	9.80	10.14	8.65	0.00	5.26	0.00	10.23	0.52	7.81	7.29	0.037328	1.000000
K	cassette	GTF2A2	chr15	-	chr15:59934462-59949604;chr15:59934462-59944404	chr15:59934462-59942867;chr15:59942964-59944404,chr15:59942964-59949604		chr15:59942868-59942963			100.00	100.00	100.00	88.89	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	95.45	91.43	100.00	100.00	95.45	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	92.86	100.00	97.44	100.00	100.00	100.00	0.00	0.767044	0.927321
K	cassette	SAP30BP	chr17	+	chr17:73700895-73702087	chr17:73700895-73701690;chr17:73701774-73702087		chr17:73701691-73701773			5.00	6.67	4.55	2.82	3.06	4.88	0.00	5.36	3.23	7.27	6.00	6.98	5.88	4.82	5.00	12.73	1.67	3.17	1.45	3.61	4.11	7.02	2.11	6.76	0.00	6.80	1.32	6.90	4.00	6.67	8.33	7.48	2.41	10.42	2.94	5.88	1.93	5.18	3.25	0.065216	0.621473
N	jcn_only_AA	AP3D1	chr19	-	chr19:2109344-2109871;chr19:2109207-2109871	chr19:2109125-2109871		chr19:2109125-2109206;chr19:2109207-2109343	chr19:2109124-2109125;chr19:2109206-2109207		4.94	6.38	1.20	4.17	7.69	10.00	4.76	2.17	5.00	1.61	1.75	3.57	3.45	3.64	1.85	6.67	1.89	0.00	0.00	5.17	0.00	3.92	2.82	1.72	0.00	2.22	2.41	3.77	0.00	5.88	4.35	2.50	2.86	3.85	5.26	4.49	3.16	4.00	0.84	0.495984	0.751225
N	jcn_only_AD	FRA10AC1	chr10	-	chr10:95430606-95435384;chr10:95430606-95431809;chr10:95430606-95431582;chr10:95430606-95436409	chr10:95430606-95431798					0.00	3.61	0.00	0.00	0.00	2.86	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	2.67	0.00	2.17	NA	6.67	NA	0.00	0.00	7.41	NA	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	1.33	0.00	-1.33	0.078798	0.627804
K	alternative_acceptor	FXYD5	chr19	+	chr19:35645713-35646453	chr19:35645713-35646435		chr19:35646436-35646453	chr19:35646453-35646454		1.66	1.37	3.08	3.59	4.05	0.74	1.75	0.52	1.04	1.21	1.83	0.75	1.49	0.00	0.00	2.33	1.64	1.08	2.19	1.38	2.92	3.83	4.46	2.14	3.49	0.59	0.00	4.66	4.25	1.63	1.91	3.33	2.29	3.23	5.68	1.19	1.97	0.98	-0.99	0.033168	0.560254
K	intron_retention	MKNK2	chr19	-	chr19:2039856-2040132				chr19:2039855-2039856;chr19:2040132-2040133		5.56	6.45	5.21	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.23	0.00	0.00	0.00	NA	NA	8.33	6.67	0.00	4.00	0.00	4.76	7.89	7.94	NA	0.00	NA	7.89	10.11	0.00	0.00	0.00	0.00	0.00	6.72	6.72	0.892139	1.000000
K	jcn_only_AA	PDLIM7	chr5	-	chr5:176916834-176917870	chr5:176917033-176917870		chr5:176916834-176917032	chr5:176916833-176916834		2.20	0.00	3.88	6.67	10.71	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.57	0.00	0.00	NA	2.99	1.64	16.67	12.00	NA	NA	4.41	0.00	0.00	10.17	NA	0.00	0.00	0.00	0.00	3.57	0.00	0.00	1.10	1.10	0.092862	0.663989
N	alternative_donor	IFI6	chr1	-	chr1:27995047-27995759;chr1:27995047-27995810;chr1:27995047-27995731;chr1:27995047-27995755	chr1:27995047-27995743		chr1:27995732-27995743;chr1:27995744-27995755;chr1:27995756-27995759;chr1:27995760-27995810	chr1:27995743-27995744;chr1:27995755-27995756;chr1:27995759-27995760;chr1:27995810-27995811		13.59	12.02	13.18	13.70	14.94	15.95	13.21	14.88	14.34	15.34	14.46	16.54	13.87	15.67	15.14	15.59	14.41	16.61	14.17	13.96	15.78	15.62	12.90	16.91	13.33	13.55	13.91	16.67	9.38	15.76	12.29	12.23	12.77	16.00	13.68	15.43	13.27	13.78	0.51	0.217489	0.594125
K	intron_retention	PPP1R37	chr19	+	chr19:45649308-45649647				chr19:45649307-45649308;chr19:45649647-45649648		31.58	11.94	9.68	10.00	8.93	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	13.33	0.00	5.56	0.00	11.48	NA	12.00	0.00	6.06	6.67	2.44	0.00	24.00	13.33	13.04	6.45	7.69	7.69	11.97	12.00	0.03	0.791704	1.000000
K	alternative_last_exon	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144895291-144909868;chr1:144892590-144909868	chr1:144906538-144909868	chr1:144890592-144892589	chr1:144906421-144906537			96.94	96.30	92.74	94.74	95.45	95.00	98.39	95.10	95.92	98.56	98.73	97.79	93.55	95.61	94.00	94.74	93.75	95.68	95.00	97.09	98.73	94.05	100.00	90.70	85.71	97.87	99.08	98.41	97.78	99.50	96.51	93.33	96.77	88.12	93.20	91.70	95.65	96.72	1.07	0.285183	0.491468
K	intron_retention	PMPCB	chr7	+	chr7:102952579-102952653				chr7:102952578-102952579;chr7:102952653-102952654		21.05	13.27	27.08	30.00	25.71	25.00	5.56	0.00	0.00	0.00	5.56	0.00	10.00	7.14	9.38	7.69	9.68	0.00	20.83	20.00	17.57	31.58	23.91	35.00	17.86	17.86	29.41	20.00	20.41	19.05	32.14	33.96	25.76	16.67	18.18	36.36	15.56	18.93	3.37	0.999283	1.000000
N	cassette	RTN4	chr2	-	chr2:55200758-55209650;chr2:55200758-55201830;chr2:55200335-55209650	chr2:55200758-55200956,chr2:55200335-55200956;chr2:55201004-55201830,chr2:55201004-55209650		chr2:55200957-55201003			97.03	100.00	97.67	100.00	98.91	NA	99.27	99.50	97.81	98.91	99.05	99.84	99.43	98.78	97.99	98.57	98.68	99.71	100.00	97.62	98.77	98.79	98.22	99.10	NA	98.69	98.75	99.10	98.96	99.19	95.24	94.85	100.00	98.75	97.99	98.64	100.00	98.16	-1.84	0.026563	0.412736
K	jcn_only_AD	CIC	chr19	+	chr19:42798451-42798755	chr19:42798457-42798755		chr19:42798451-42798456	chr19:42798450-42798451		75.00	69.23	56.94	60.00	61.90	NA	71.43	64.44	72.50	81.48	65.22	70.00	67.65	74.07	69.23	66.67	65.22	78.26	NA	65.62	60.00	62.50	75.00	NA	72.22	67.27	69.23	65.22	71.88	75.00	63.41	67.21	58.82	54.55	48.39	62.50	69.23	66.44	-2.79	0.894355	0.946507
N	alternative_acceptor	RAB11A	chr15	+	chr15:91492951-91493408	chr15:91492951-91493383		chr15:91493384-91493408	chr15:91493408-91493409		100.00	93.94	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor	CFB,XXbac-BPG116M5.17	chr6	+	chr6:31919382-31924487;chr6:31919382-31919651;chr6:31919382-31919565	chr6:31919382-31919551		chr6:31919552-31919565;chr6:31919566-31919651;chr6:31919652-31924487	chr6:31919565-31919566;chr6:31919651-31919652;chr6:31924487-31924488		0.00	0.00	0.00	0.00	0.00	1.08	NA	0.00	0.00	NA	NA	NA	25.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	1.12	0.00	0.00	0.00	1.20	0.00	0.00	0.00	NA	0.00	2.47	0.00	0.00	0.00	0.390387	0.709013
N	coord_cassette	TRPV2	chr17	+	chr17:16332297-16340102	chr17:16332297-16335279;chr17:16335615-16336887;chr17:16337013-16338203;chr17:16338284-16340102		chr17:16335280-16335614;chr17:16336888-16337012;chr17:16338204-16338283			90.24	100.00	100.00	100.00	94.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	100.00	97.73	100.00	91.49	100.00	95.83	100.00	100.00	96.23	100.00	100.00	0.00	0.294303	0.643829
K	jcn_only_AA	NXF1	chr11	-	chr11:62563815-62563931	chr11:62563818-62563931		chr11:62563815-62563817	chr11:62563814-62563815		98.74	97.26	99.28	95.45	98.28	100.00	100.00	95.16	97.22	96.43	100.00	100.00	96.88	100.00	95.24	95.56	96.97	97.56	100.00	97.58	98.18	95.92	97.35	99.19	100.00	98.73	97.62	97.26	98.25	97.12	98.48	97.99	95.00	97.64	97.14	99.01	98.63	98.61	-0.02	0.946893	0.981281
K	intron_retention	SNRNP200	chr2	-	chr2:96942724-96942818				chr2:96942723-96942724;chr2:96942818-96942819		0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	1.20	0.00	0.00	0.00	1.61	0.00	0.00	0.00	5.41	4.69	0.00	2.63	1.49	0.00	0.00	0.00	0.00	0.476296	1.000000
N	jcn_only_AA	HGS	chr17	+	chr17:79660996-79661844	chr17:79660996-79661285		chr17:79661286-79661844	chr17:79661844-79661845		0.00	0.00	0.00	NA	0.00	NA	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.96	0.00	0.00	0.00	3.77	0.00	0.00	0.00	5.13	0.00	0.00	0.00	2.22	0.00	6.10	0.00	3.33	0.00	0.00	0.00	0.932067	0.977987
K	alternative_first_exon	BET1L,LMO2	chr11	-	chr11:206044-207302	chr11:206044-207006	chr11:207303-207428	chr11:207007-207221			12.50	0.00	13.33	NA	NA	NA	0.00	0.00	3.85	0.00	0.00	0.00	0.00	6.67	0.00	5.26	0.00	0.00	NA	9.09	NA	10.00	0.00	0.00	21.43	6.67	0.00	NA	16.67	NA	NA	9.09	15.38	NA	0.00	NA	0.00	6.67	6.67	0.943193	0.961193
K	intron_retention		chr19	-	chr19:8610621-8612919				chr19:8610620-8610621;chr19:8612919-8612920		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.55	0.00	0.00	0.00	0.00	0.00	0.00	0.487451	1.000000
N	alternative_donor	PLXND1,SSR3	chr3	-	chr3:129291785-129292436	chr3:129291785-129291907		chr3:129291908-129292436	chr3:129292436-129292437		2.50	4.00	2.80	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.39	0.00	0.00	0.00	0.65	0.00	5.26	0.00	0.00	0.00	1.82	0.00	1.69	0.00	1.45	0.00	2.22	0.00	0.00	0.00	15.38	0.00	1.28	1.75	2.84	0.00	-2.84	0.146654	0.562927
K	intron_retention	POM121C	chr7	-	chr7:75046340-75046343				chr7:75046339-75046340;chr7:75046343-75046344		56.52	68.24	47.37	54.55	60.00	53.09	43.75	NA	63.64	47.37	58.33	NA	40.00	NA	54.55	48.00	63.16	NA	85.90	72.22	55.17	78.26	81.13	82.61	0.00	0.00	0.00	0.00	0.00	0.00	42.31	47.37	43.18	42.31	56.00	44.12	43.47	49.42	5.95	0.978510	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7127195-7127286				chr17:7127194-7127195;chr17:7127286-7127287		10.37	4.59	12.21	8.98	13.68	7.30	0.00	0.85	1.71	0.45	1.20	0.00	0.40	0.94	2.33	1.15	1.40	0.00	2.38	8.43	3.60	9.70	13.38	5.81	3.56	7.35	12.06	4.83	6.88	4.56	11.04	11.03	5.02	10.22	7.66	4.66	2.97	7.89	4.92	0.289005	1.000000
K	jcn_only_AA	RP11-51F16.8,STRADA	chr17	-	chr17:61781943-61783994	chr17:61782269-61783994		chr17:61781943-61782268	chr17:61781942-61781943		10.26	0.00	9.84	NA	10.53	NA	0.00	2.17	1.82	0.00	0.00	NA	5.56	4.76	0.00	7.14	5.13	NA	NA	8.33	10.53	NA	6.06	NA	0.00	0.00	2.44	0.00	0.00	0.00	8.00	0.00	NA	0.00	11.54	6.90	0.00	6.38	6.38	0.085257	0.663989
N	alternative_acceptor	PLA2G4C	chr19	-	chr19:48565452-48571047;chr19:48568294-48571047	chr19:48565410-48571047		chr19:48565410-48565451;chr19:48565452-48568293	chr19:48565409-48565410;chr19:48565451-48565452		100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	94.74	93.33	88.89	100.00	96.61	100.00	100.00	100.00	95.24	97.56	97.67	100.00	100.00	97.37	100.00	100.00	100.00	0.00	0.181701	0.660713
N	cassette	MICAL1	chr6	-	chr6:109768433-109768883;chr6:109768433-109769934	chr6:109768433-109768559;chr6:109768644-109768883,chr6:109768644-109769934		chr6:109768560-109768643			100.00	100.00	92.50	100.00	84.62	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	95.00	94.59	100.00	93.10	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	LGALS9	chr17	+	chr17:25972376-25972886				chr17:25972375-25972376;chr17:25972886-25972887		1.31	2.63	3.45	0.00	1.75	0.00	0.30	0.16	0.46	0.00	0.00	0.27	0.44	0.59	0.83	1.22	0.32	0.32	1.22	1.51	0.85	0.00	3.01	3.26	0.00	2.50	7.14	5.34	4.03	3.70	0.59	5.00	1.41	4.49	3.23	2.99	0.83	0.95	0.12	0.997406	1.000000
K	alternative_donor	ANKRD13D	chr11	+	chr11:67067083-67067297	chr11:67067093-67067297		chr11:67067083-67067092	chr11:67067082-67067083		10.00	13.25	11.71	NA	14.55	NA	6.45	0.00	0.00	NA	8.11	NA	6.25	0.00	5.88	NA	2.08	NA	7.69	4.35	7.69	NA	12.12	10.00	9.68	7.69	9.41	NA	9.09	NA	9.52	12.86	14.94	7.69	13.46	4.76	8.69	6.02	-2.67	0.091831	0.479695
N	alternative_acceptor	GMPR2	chr14	+	chr14:24706769-24707832;chr14:24706769-24707457;chr14:24706769-24707451	chr14:24706769-24707794		chr14:24707452-24707457;chr14:24707458-24707794;chr14:24707795-24707832	chr14:24707457-24707458;chr14:24707794-24707795;chr14:24707832-24707833		0.00	0.00	0.00	NA	11.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.00	NA	16.67	0.00	0.00	NA	5.56	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	7.41	0.00	0.00	11.76	7.69	0.00	0.00	0.00	0.363217	0.709013
K	jcn_only_AA	RRP36	chr6	+	chr6:42993880-42994915	chr6:42993880-42994867		chr6:42994868-42994915	chr6:42994915-42994916		2.63	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	2.86	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	10.42	0.00	0.00	0.00	0.00	4.17	2.86	3.77	1.61	0.00	0.74	0.00	-0.74	0.655358	0.846812
K	alternative_acceptor	ARFRP1	chr20	-	chr20:62333570-62337708	chr20:62337144-62337708		chr20:62333570-62337143	chr20:62333569-62333570		10.26	5.00	29.41	3.12	5.00	3.12	0.00	0.00	0.97	1.23	0.00	3.33	0.00	2.00	1.77	2.17	2.56	4.55	6.25	5.56	4.55	10.34	6.90	14.00	5.26	6.67	14.93	4.65	4.00	3.08	4.00	13.73	6.67	8.11	6.25	9.00	5.13	4.78	-0.35	0.657071	0.874938
K	cassette	CACNA2D4	chr12	-	chr12:1919507-1920827	chr12:1919507-1919708;chr12:1919754-1920827		chr12:1919709-1919753			35.71	62.50	35.29	NA	53.33	NA	55.77	NA	66.67	77.42	68.89	52.00	66.25	56.25	NA	67.57	73.47	77.78	45.45	46.67	26.67	63.64	64.00	61.54	36.84	31.25	46.15	58.82	53.33	53.85	NA	40.00	54.55	27.27	41.18	55.00	55.16	41.19	-13.97	0.169425	0.709176
K	intron_retention	ALYREF	chr17	-	chr17:79846295-79846395				chr17:79846294-79846295;chr17:79846395-79846396		1.69	0.67	0.00	0.58	0.53	0.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	6.15	1.97	0.70	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.74	9.68	6.86	4.65	0.00	0.00	0.74	0.34	0.84	0.51	0.642363	1.000000
N	jcn_only_AD	ZFAS1	chr20	+	chr20:47893379-47895640;chr20:47895276-47895640;chr20:47894935-47895640;chr20:47895128-47895640;chr20:47893757-47895640	chr20:47895254-47895640		chr20:47893379-47893756;chr20:47893757-47894934;chr20:47894935-47895127;chr20:47895128-47895253;chr20:47895254-47895275	chr20:47893378-47893379;chr20:47893756-47893757;chr20:47894934-47894935;chr20:47895127-47895128;chr20:47895253-47895254		92.72	92.89	89.77	92.31	94.51	89.47	93.71	81.69	90.53	93.37	96.13	93.38	92.48	82.65	92.03	92.31	93.50	93.18	94.78	85.71	92.92	94.44	92.76	92.14	98.25	83.15	93.75	92.79	94.30	87.92	90.99	90.53	94.34	94.89	92.39	93.10	94.03	84.43	-9.59	0.005492	0.182851
K	alternative_donor	HAUS4	chr14	-	chr14:23424386-23426132;chr14:23424386-23425954	chr14:23424386-23426124		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		52.94	57.89	50.00	NA	NA	NA	55.74	57.89	51.35	66.67	56.10	68.18	61.22	56.52	48.57	40.00	45.71	NA	NA	53.33	50.00	NA	41.18	NA	36.36	52.94	36.84	NA	35.71	NA	NA	53.33	NA	NA	35.71	NA	56.81	53.33	-3.48	0.756540	0.901705
N	alternative_last_exon		chr12	+	chr12:113354544-113369682;chr12:113354544-113357291,chr12:113354544-113357193	chr12:113354544-113355351	chr12:113369683-113371027;chr12:113357292-113357680	chr12:113355352-113356267			98.82	84.21	94.12	82.35	NA	93.33	92.65	99.12	96.08	94.59	85.19	95.58	97.62	99.63	96.35	97.92	88.89	97.56	80.00	98.64	91.26	91.67	NA	98.86	72.22	99.77	96.30	97.62	90.00	98.74	96.60	83.97	58.33	81.25	75.00	95.52	82.10	98.97	16.87	0.027223	0.217248
K	alternative_acceptor	PCM1,PDLIM2	chr8	+	chr8:17872350-17882869	chr8:17872350-17873209		chr8:17873210-17882869	chr8:17882869-17882870		2.33	0.00	3.51	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	5.88	0.00	0.00	1.89	0.00	0.00	5.88	1.75	0.00	0.00	0.00	4.00	2.38	0.00	2.78	2.17	4.17	0.00	4.94	4.94	0.013169	0.475765
K	jcn_only_AA	EIF3G	chr19	-	chr19:10226458-10226642	chr19:10226497-10226642		chr19:10226458-10226496	chr19:10226457-10226458		99.05	98.40	100.00	100.00	100.00	94.20	100.00	98.44	99.10	98.57	99.33	98.46	99.24	97.92	100.00	99.52	99.37	100.00	95.43	97.62	97.08	100.00	100.00	93.75	99.17	96.81	98.76	100.00	100.00	100.00	98.15	97.28	96.11	100.00	100.00	100.00	98.78	98.03	-0.75	0.943740	0.981281
K	intron_retention		chr14	+	chr14:23564829-23566866				chr14:23564828-23564829;chr14:23566866-23566867		4.62	0.00	5.56	9.52	5.77	NA	0.00	2.82	0.00	4.41	2.27	0.00	0.99	2.99	4.11	3.75	1.14	3.12	0.00	5.81	4.35	3.92	3.97	6.25	0.00	8.45	3.85	0.00	3.88	3.23	7.35	7.92	4.35	6.35	7.25	8.77	0.00	5.21	5.21	0.055149	1.000000
K	jcn_only_AD	DHRS3	chr1	-	chr1:12640695-12677158;chr1:12640695-12655998	chr1:12640695-12676563		chr1:12655999-12676563;chr1:12676564-12677158	chr1:12676563-12676564;chr1:12677158-12677159		0.00	0.00	0.00	NA	0.00	NA	5.26	2.38	0.00	0.00	2.04	13.33	3.28	6.25	NA	15.38	1.14	6.25	6.25	0.00	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	14.29	NA	1.64	0.00	-1.64	0.526461	0.754861
N	jcn_only_AD		chr1	-	chr1:1718493-1718929;chr1:1718493-1718764	chr1:1718493-1718760		chr1:1718761-1718764;chr1:1718765-1718929	chr1:1718764-1718765;chr1:1718929-1718930		94.29	95.96	93.31	91.04	94.82	93.66	95.09	92.82	93.01	92.34	93.52	93.26	94.02	94.11	92.46	91.71	92.45	93.50	94.48	93.69	93.18	93.82	92.65	91.78	96.21	93.27	93.03	94.92	91.17	92.31	94.02	93.65	95.97	92.96	94.95	93.10	95.53	93.85	-1.67	0.005905	0.184071
K	cassette	APP	chr21	-	chr21:27354791-27394155;chr21:27354791-27372329	chr21:27354791-27369674;chr21:27369732-27372329,chr21:27369732-27394155		chr21:27369675-27369731			14.37	11.11	17.18	NA	18.18	NA	22.60	26.67	25.86	29.05	25.70	28.94	22.79	25.50	26.67	26.38	23.45	28.48	NA	13.38	21.43	18.84	15.56	21.37	16.67	22.29	18.61	27.16	27.08	29.76	15.56	16.96	NA	22.22	24.77	22.80	19.64	18.93	-0.71	0.727717	0.905209
K	intron_retention	NSUN2	chr5	-	chr5:6602614-6604250				chr5:6602613-6602614;chr5:6604250-6604251		0.00	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	3.70	5.00	1.61	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.70	NA	0.00	1.67	2.15	0.00	0.00	0.00	0.594508	1.000000
K	cassette	HAX1	chr1	+	chr1:154245253-154246249	chr1:154245253-154245955;chr1:154246075-154246249		chr1:154245956-154246074			88.24	73.68	77.61	NA	88.24	NA	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.96	91.43	90.91	93.02	90.48	NA	100.00	92.31	100.00	97.44	100.00	93.75	81.13	100.00	100.00	90.48	89.19	100.00	96.88	-3.12	0.988325	0.997001
K	cassette	LMBR1L	chr12	-	chr12:49491523-49494170	chr12:49491523-49491726;chr12:49491889-49494170		chr12:49491727-49491888			96.43	97.18	100.00	93.75	94.44	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.25	NA	100.00	80.00	93.83	100.00	98.21	100.00	90.48	100.00	100.00	95.89	95.00	87.50	96.30	96.67	98.59	100.00	1.41	0.213382	0.709176
K	intron_retention	SF3A2	chr19	+	chr19:2245555-2246751				chr19:2245554-2245555;chr19:2246751-2246752		6.45	7.32	8.11	0.00	2.70	NA	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	1.61	1.30	0.00	0.00	0.00	10.71	8.00	3.70	5.45	4.35	0.00	3.23	5.13	4.35	5.56	9.68	10.34	7.89	13.04	3.85	6.25	9.09	0.00	4.84	4.84	0.914318	1.000000
K	jcn_only_AD	SCAMP3	chr1	-	chr1:155226583-155227088;chr1:155226583-155227075	chr1:155226583-155228616					29.63	14.10	13.21	0.00	22.58	18.18	1.47	4.44	4.23	0.00	0.00	0.00	0.00	4.35	3.95	1.43	1.92	0.00	17.33	10.00	19.78	14.29	19.30	14.29	23.81	4.44	22.58	13.33	12.24	6.00	8.93	24.62	30.49	20.51	22.45	13.51	15.71	6.69	-9.03	0.520639	0.754861
K	cassette	ATP6AP2	chrX	+	chrX:40450618-40457932	chrX:40450618-40456778;chrX:40456917-40457932		chrX:40456779-40456916			96.21	100.00	98.15	93.75	100.00	NA	98.01	100.00	100.00	99.32	98.88	99.02	98.81	98.68	100.00	99.57	98.57	98.97	100.00	97.73	100.00	99.36	98.13	98.76	NA	100.00	98.36	100.00	96.43	98.46	98.98	96.84	100.00	98.97	98.40	98.15	100.00	98.83	-1.17	0.318148	0.709176
K	intron_retention		chr19	-	chr19:36605616-36605699				chr19:36605615-36605616;chr19:36605699-36605700		4.35	0.00	4.17	7.69	0.00	6.06	3.03	NA	0.00	3.57	0.00	4.76	6.06	0.00	4.35	9.52	6.25	9.52	2.94	5.56	12.07	0.00	5.56	3.70	12.00	6.67	12.12	4.17	6.67	9.09	4.55	9.38	2.99	7.14	13.64	4.35	3.01	4.55	1.54	0.559709	1.000000
K	intron_retention	OGFR	chr20	+	chr20:61438958-61439598				chr20:61438957-61438958;chr20:61439598-61439599		2.58	3.57	4.30	0.00	1.79	5.88	0.00	0.76	0.00	0.77	1.18	1.58	0.00	0.70	2.22	1.32	0.00	1.05	0.00	3.14	2.63	4.62	2.15	4.79	0.00	2.48	2.38	3.28	1.49	4.35	2.60	4.14	0.00	6.76	5.97	6.50	0.00	2.53	2.53	0.834472	1.000000
N	mutually_exclusive	NONO	chrX	+	chrX:70511823-70514247,chrX:70514379-70516414	chrX:70511823-70514076,chrX:70514199-70516414	chrX:70514248-70514378	chrX:70514077-70514198			27.12	33.33	26.42	23.08	28.57	10.00	32.80	18.18	30.77	38.57	37.61	37.04	31.43	30.77	36.00	35.11	40.18	36.76	18.18	32.14	23.08	28.57	30.14	28.79	NA	35.96	27.96	27.27	26.98	25.93	40.00	29.58	20.00	28.92	29.67	35.43	31.43	31.45	0.02	0.454470	0.545364
K	jcn_only_AD	PABPC4	chr1	-	chr1:40026795-40027399	chr1:40026795-40027356		chr1:40027357-40027399	chr1:40027399-40027400		98.33	96.20	96.92	96.94	98.45	95.60	96.65	100.00	94.12	96.37	94.94	97.41	98.36	100.00	96.77	98.09	97.37	100.00	96.37	100.00	94.64	97.35	98.36	98.57	94.05	100.00	94.64	97.32	98.13	98.33	95.51	94.62	97.13	98.24	95.43	98.19	96.51	100.00	3.49	0.024725	0.366050
N	alternative_acceptor	IFNGR1	chr6	-	chr6:137522146-137524635	chr6:137524041-137524635		chr6:137522146-137524040	chr6:137522145-137522146		1.90	5.26	4.18	NA	0.00	NA	0.59	0.50	0.56	0.00	1.20	0.00	0.83	0.71	0.76	0.00	1.07	0.00	0.00	1.55	0.00	0.00	2.40	2.50	9.09	1.59	1.76	0.00	0.90	0.00	1.56	1.75	0.00	3.19	3.61	1.49	0.71	1.56	0.85	0.427653	0.740430
N	alternative_acceptor	DDIT3	chr12	-	chr12:57911192-57911488;chr12:57911379-57911488;chr12:57911222-57911488;chr12:57911326-57911488	chr12:57911208-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		30.00	24.39	22.22	14.29	17.39	18.75	16.67	21.74	19.15	9.09	16.67	NA	27.27	25.64	23.26	NA	NA	NA	30.56	22.58	27.78	23.33	19.05	17.65	23.08	23.29	22.58	12.50	15.00	17.65	29.41	30.49	24.64	21.21	32.26	16.67	24.52	24.46	-0.05	0.682148	0.881289
K	intron_retention	SRSF2	chr17	-	chr17:74730645-74731142				chr17:74730644-74730645;chr17:74731142-74731143		76.36	78.67	80.15	79.59	69.90	84.21	88.00	80.00	77.63	87.16	87.33	93.81	90.91	69.64	80.41	93.15	91.09	95.41	68.09	64.71	67.47	77.10	71.66	79.17	50.00	68.82	73.83	84.62	71.43	78.72	59.42	66.44	75.41	84.62	85.44	82.57	77.04	69.23	-7.81	0.830093	1.000000
N	alternative_acceptor		chrX	+	chrX:117910475-117914480;chrX:117910475-117925052;chrX:117910475-117938894	chrX:117910475-117925724		chrX:117914481-117925052;chrX:117925053-117925724;chrX:117925725-117938894	chrX:117925052-117925053;chrX:117925724-117925725;chrX:117938894-117938895		84.91	78.43	91.14	100.00	90.62	94.44	94.29	85.00	97.06	90.00	91.43	100.00	93.33	100.00	92.59	100.00	96.67	NA	76.92	94.12	82.35	100.00	94.74	100.00	82.76	80.77	91.23	85.71	100.00	85.71	80.00	90.00	90.00	90.00	92.00	92.86	86.38	84.95	-1.42	0.743019	0.903518
N	jcn_only_AA		chr16	+	chr16:67575482-67575539;chr16:67575482-67575604	chr16:67575482-67575555		chr16:67575540-67575555;chr16:67575556-67575604	chr16:67575555-67575556;chr16:67575604-67575605		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_last_exon	VTI1A	chr10	+	chr10:114428758-114452564,chr10:114428758-114512111;chr10:114428758-114575048	chr10:114428758-114496481	chr10:114575049-114578503	chr10:114496482-114497543			0.00	10.00	4.17	NA	0.00	NA	0.00	5.56	0.00	NA	5.26	NA	0.00	6.67	5.56	0.00	4.76	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	10.00	9.09	0.00	0.00	NA	0.00	0.00	6.25	0.00	0.00	0.00	0.876707	0.935325
K	intron_retention		chr2	+	chr2:242608101-242610140				chr2:242608100-242608101;chr2:242610140-242610141		6.90	6.67	11.90	3.33	1.39	2.70	0.00	0.00	0.00	0.00	2.63	0.00	4.55	0.00	0.00	0.00	2.63	0.00	0.00	2.70	3.45	8.70	0.00	6.25	5.00	11.54	17.95	7.14	5.41	0.00	4.44	6.33	1.37	11.43	4.17	11.36	2.96	3.57	0.61	0.854863	1.000000
K	intron_retention	RASAL3	chr19	-	chr19:15562920-15563468				chr19:15562919-15562920;chr19:15563468-15563469		0.00	10.34	12.00	NA	14.29	NA	0.00	0.00	NA	NA	0.00	NA	0.00	13.33	9.09	NA	0.00	NA	5.26	5.00	8.11	NA	7.14	NA	32.14	6.90	15.62	NA	14.29	NA	5.00	10.34	8.11	NA	25.00	NA	6.68	5.00	-1.68	0.552721	1.000000
K	alternative_acceptor	RP11-1035H13.3,RPS15A	chr16	-	chr16:18799482-18800302;chr16:18799428-18800302	chr16:18799465-18800302		chr16:18799428-18799464;chr16:18799465-18799481	chr16:18799427-18799428;chr16:18799464-18799465		96.72	95.02	96.29	98.53	98.43	97.79	98.13	96.75	97.41	96.20	96.52	95.66	97.96	99.09	97.34	97.85	96.61	97.00	93.39	92.47	94.88	98.18	98.17	98.66	95.23	96.97	97.68	99.08	99.10	98.58	96.70	95.63	91.67	99.05	98.73	99.50	95.12	96.73	1.61	0.391635	0.709487
N	cassette	HSD17B14	chr19	-	chr19:49316606-49318293	chr19:49316606-49316919;chr19:49316988-49318293		chr19:49316920-49316987			87.50	100.00	100.00	88.46	89.39	90.00	100.00	100.00	NA	100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.86	100.00	100.00	96.30	92.42	100.00	86.96	100.00	100.00	95.24	94.23	100.00	87.80	100.00	93.10	80.00	100.00	97.06	96.55	100.00	3.45	0.909884	0.973512
K	intron_retention	TBC1D17	chr19	+	chr19:50388016-50390732				chr19:50388015-50388016;chr19:50390732-50390733		69.05	0.00	47.22	12.50	13.51	13.04	0.00	91.67	56.67	NA	30.00	NA	4.76	95.35	77.19	12.50	NA	NA	4.62	71.79	14.71	45.45	36.36	78.57	1.72	81.36	38.46	47.62	11.76	54.55	28.57	19.67	2.22	36.36	48.72	60.98	1.97	76.58	74.61	0.001383	0.920759
K	jcn_only_AA	C17orf62	chr17	-	chr17:80403833-80404498;chr17:80403837-80404498	chr17:80403757-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		0.43	0.00	0.42	8.33	2.00	0.00	0.00	0.42	0.67	0.00	1.22	1.96	1.97	0.50	1.28	0.00	0.00	0.00	0.00	1.31	1.16	4.35	2.53	5.26	2.94	0.67	2.33	0.00	1.61	3.03	3.95	0.57	4.44	2.70	1.39	1.74	0.98	0.58	-0.40	0.725375	0.877626
K	intron_retention	AGRN	chr1	+	chr1:989358-989827				chr1:989357-989358;chr1:989827-989828		4.08	0.00	5.56	4.00	1.82	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	5.56	4.17	4.65	11.11	0.00	4.31	0.00	0.00	0.00	1.49	8.40	4.35	0.00	13.51	13.51	8.15	0.00	4.20	4.20	0.078920	1.000000
K	cassette	KATNA1	chr6	-	chr6:149916371-149918642	chr6:149916371-149918198;chr6:149918326-149918642		chr6:149918199-149918325			95.45	90.32	100.00	96.00	92.68	89.74	100.00	94.12	100.00	92.86	100.00	88.24	100.00	100.00	96.15	96.00	100.00	100.00	100.00	88.00	94.23	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	87.88	93.18	91.18	100.00	100.00	95.83	100.00	94.78	-5.22	0.386701	0.709410
K	jcn_only_AA	CMTM3	chr16	+	chr16:66643434-66643785	chr16:66643434-66643661		chr16:66643662-66643785	chr16:66643785-66643786		1.61	0.00	2.53	NA	1.82	NA	1.01	2.08	2.17	1.63	0.94	0.00	0.92	1.30	5.00	0.99	0.86	0.00	0.00	5.00	0.00	3.57	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	5.00	6.25	0.00	1.75	2.08	0.00	0.00	2.77	2.77	0.008457	0.482846
K	intron_retention		chr9	+	chr9:130258375-130259531				chr9:130258374-130258375;chr9:130259531-130259532		0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	TMEM14C	chr6	+	chr6:10723475-10724808;chr6:10723475-10724788	chr6:10723475-10724802		chr6:10724789-10724802;chr6:10724803-10724808	chr6:10724802-10724803;chr6:10724808-10724809		97.87	100.00	97.14	100.00	95.38	NA	94.09	87.88	97.18	98.08	95.86	91.95	96.07	91.84	91.36	93.92	95.86	98.77	89.29	92.86	100.00	96.88	96.80	97.18	100.00	93.75	97.56	94.34	95.35	94.44	90.00	92.31	94.74	91.67	92.71	92.97	95.41	92.35	-3.06	0.155100	0.663989
K	intron_retention	FGFR1OP2	chr12	+	chr12:27110677-27113447				chr12:27110676-27110677;chr12:27113447-27113448		0.00	5.17	4.76	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	1.79	2.86	2.44	2.86	1.52	0.00	0.00	0.00	4.00	0.00	0.00	0.00	9.68	7.27	4.11	0.00	4.17	1.64	1.70	0.00	-1.70	0.864227	1.000000
K	cassette	EIF4A2	chr3	+	chr3:186502486-186503671	chr3:186502486-186502750;chr3:186502891-186503671		chr3:186502751-186502890			64.10	53.57	61.05	NA	61.11	NA	84.21	74.07	71.23	81.93	80.39	87.93	80.83	73.08	63.68	69.57	72.63	85.71	NA	60.00	69.57	58.70	65.05	54.55	NA	58.54	70.62	57.89	75.00	68.42	41.18	48.09	54.55	53.06	56.16	49.07	67.69	62.05	-5.64	0.529939	0.804982
N	alternative_acceptor	SIRT7	chr17	-	chr17:79872407-79872479;chr17:79872381-79872479	chr17:79872333-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		0.00	3.33	11.36	0.00	0.00	NA	0.00	0.00	0.00	0.00	12.50	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	14.29	0.00	13.79	5.13	NA	0.00	0.00	0.00	11.11	8.57	5.26	0.00	0.00	0.00	0.00	0.00	0.811172	0.932903
N	alternative_donor	C1orf52	chr1	-	chr1:85718386-85724206	chr1:85718386-85722852		chr1:85722853-85724206	chr1:85724206-85724207		3.03	0.00	10.81	0.00	0.00	0.00	0.00	4.76	3.57	2.27	2.04	2.63	5.26	0.00	3.03	2.13	2.27	0.00	0.00	3.70	0.00	2.94	3.12	9.09	NA	7.41	3.33	0.00	2.56	0.00	2.56	1.79	0.00	10.00	9.68	9.68	0.00	3.37	3.37	0.117395	0.529698
N	jcn_only_AA		chr1	+	chr1:17965185-17965732;chr1:17965185-17966326	chr1:17965185-17966696		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		92.36	75.00	96.30	94.74	100.00	100.00	100.00	98.01	100.00	96.73	99.01	100.00	94.20	96.15	96.72	96.58	96.99	96.72	100.00	91.36	95.45	96.08	94.44	94.00	NA	87.23	90.00	89.80	100.00	92.68	95.77	100.00	100.00	92.68	94.25	95.51	100.00	94.06	-5.94	0.946550	0.981281
K	alternative_last_exon	KTN1	chr14	+	chr14:56146404-56168061;chr14:56146404-56150816	chr14:56146404-56147403	chr14:56150817-56151301	chr14:56147404-56147459			4.55	1.67	3.70	4.51	1.08	0.85	0.00	2.56	3.39	3.57	5.56	3.45	3.70	7.14	3.39	7.69	2.86	4.35	1.75	5.13	4.39	5.32	2.80	9.20	0.00	4.72	2.27	2.82	1.83	1.98	6.85	5.41	1.10	5.47	3.91	5.43	1.39	4.92	3.54	0.001777	0.103535
N	alternative_donor		chr16	-	chr16:4415547-4417184;chr16:4415547-4417298;chr16:4415547-4437966	chr16:4415547-4437986		chr16:4417185-4417298;chr16:4417299-4437966;chr16:4437967-4437986	chr16:4417298-4417299;chr16:4437966-4437967;chr16:4437986-4437987		100.00	100.00	94.87	NA	100.00	NA	100.00	100.00	94.59	100.00	100.00	100.00	100.00	97.00	96.00	96.83	100.00	100.00	NA	97.56	NA	96.43	95.92	92.31	100.00	98.39	93.33	93.55	100.00	100.00	100.00	100.00	NA	94.29	97.73	94.55	100.00	99.19	-0.81	0.088096	0.476101
N	jcn_only_AA	LILRB4	chr19	+	chr19:55178201-55178815;chr19:55178201-55178261;chr19:55178201-55179085;chr19:55178201-55178293	chr19:55178201-55179088		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		49.46	39.29	53.87	52.62	48.15	51.21	49.87	52.49	53.73	53.63	49.56	53.22	49.13	50.93	52.60	53.47	49.48	56.93	53.59	53.95	53.16	52.68	52.68	54.54	53.93	50.68	47.63	49.77	46.40	50.81	52.16	50.13	50.27	51.45	52.86	53.79	50.07	51.55	1.48	0.356565	0.663989
K	intron_retention		chr11	+	chr11:72540030-72540347				chr11:72540029-72540030;chr11:72540347-72540348		7.41	3.46	7.22	3.33	7.55	0.00	10.00	NA	NA	NA	NA	NA	5.88	NA	0.00	NA	NA	NA	2.87	10.00	5.10	0.00	3.28	0.00	4.27	5.88	7.04	0.00	7.32	NA	1.85	6.35	4.43	10.00	8.33	7.14	4.35	6.64	2.29	0.969316	1.000000
K	coord_cassette	ATP6AP2	chrX	+	chrX:40450618-40457932	chrX:40450618-40456500;chrX:40456597-40456778;chrX:40456917-40457932		chrX:40456501-40456596;chrX:40456779-40456916			97.25	100.00	98.63	94.74	100.00	NA	98.58	100.00	100.00	99.48	99.09	99.22	99.15	99.06	100.00	99.71	98.89	99.22	100.00	98.22	100.00	99.49	98.49	99.04	NA	100.00	98.75	100.00	97.19	98.73	99.16	97.67	100.00	99.17	98.77	98.58	100.00	99.11	-0.89	0.285798	0.643829
N	alternative_donor		chr7	-	chr7:938587-938677	chr7:938587-938669		chr7:938670-938677	chr7:938677-938678		100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.08	NA	100.00	97.50	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.00	95.56	92.31	100.00	NA	100.00	100.00	96.43	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention		chr19	+	chr19:35524644-35530020				chr19:35524643-35524644;chr19:35530020-35530021		3.66	11.54	6.84	13.16	0.00	17.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.06	0.00	0.00	0.00	0.00	9.09	6.12	13.79	2.04	15.22	0.00	11.67	5.79	2.56	1.75	10.77	3.57	4.72	0.00	8.57	0.00	10.31	0.00	3.62	3.62	0.576773	1.000000
K	cassette	VPS29	chr12	-	chr12:110929928-110933816	chr12:110929928-110930800;chr12:110931037-110933816		chr12:110930801-110931036			96.36	93.94	96.48	87.80	93.88	93.58	99.33	98.98	97.87	96.46	97.74	97.27	96.69	97.99	97.42	94.81	97.51	97.25	90.23	93.37	97.73	94.00	95.03	94.40	90.82	97.62	94.41	95.61	93.79	93.29	95.54	96.49	90.40	91.10	95.03	93.48	92.38	96.99	4.61	0.119183	0.709176
K	intron_retention	DHRS4L2	chr14	+	chr14:24459569-24464240				chr14:24459568-24459569;chr14:24464240-24464241		0.00	0.00	4.35	0.00	4.76	0.00	7.69	5.26	14.29	NA	4.76	9.09	8.00	11.11	NA	0.00	0.00	NA	0.00	8.70	4.35	0.00	0.00	NA	0.00	5.88	0.00	NA	0.00	NA	NA	5.00	5.00	NA	NA	0.00	2.50	5.88	3.38	0.741649	1.000000
K	intron_retention	ATG4B	chr2	+	chr2:242594063-242594685				chr2:242594062-242594063;chr2:242594685-242594686		0.00	0.00	1.45	10.00	2.22	NA	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	3.23	3.23	0.00	0.00	0.00	0.00	4.76	5.88	0.00	0.00	0.00	2.78	2.67	8.82	2.27	1.75	5.36	0.00	1.39	1.39	0.988482	1.000000
N	jcn_only_AA	TPR	chr1	-	chr1:186289551-186291449	chr1:186289566-186291449		chr1:186289551-186289565	chr1:186289550-186289551		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	4.65	0.00	0.00	0.00	0.00	3.77	1.67	2.94	0.00	0.00	0.00	0.235462	0.663989
N	jcn_only_AD	SCCPDH	chr1	+	chr1:246927660-246929359;chr1:246927606-246929359	chr1:246927647-246929359		chr1:246927606-246927646;chr1:246927647-246927659	chr1:246927605-246927606;chr1:246927646-246927647		2.50	0.00	0.00	13.33	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.180054	0.657607
N	jcn_only_AD	DUS1L	chr17	-	chr17:80019230-80019432;chr17:80019230-80019517	chr17:80019230-80019493		chr17:80019433-80019493;chr17:80019494-80019517	chr17:80019493-80019494;chr17:80019517-80019518		100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	95.83	96.72	100.00	95.00	100.00	95.12	100.00	97.83	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	95.24	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	SMIM7	chr19	-	chr19:16757612-16757930				chr19:16757611-16757612;chr19:16757930-16757931		91.30	84.72	96.67	88.46	94.74	91.18	96.20	94.74	98.00	92.16	92.21	88.46	92.11	97.37	96.00	95.16	94.37	92.31	85.48	95.65	93.75	100.00	92.11	NA	94.00	86.67	92.86	90.32	95.16	88.89	93.33	88.00	88.46	96.97	93.18	91.43	90.28	94.03	3.75	0.446856	1.000000
K	intron_retention		chr17	-	chr17:27044013-27044230				chr17:27044012-27044013;chr17:27044230-27044231		3.57	0.00	9.60	NA	0.00	NA	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.57	0.00	NA	0.00	4.29	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	CUX1	chr7	+	chr7:101758554-101801839	chr7:101758554-101768807		chr7:101768808-101801839	chr7:101801839-101801840		4.00	8.00	0.00	NA	17.65	100.00	1.49	0.00	7.69	0.00	2.27	3.90	0.00	0.00	0.00	3.70	2.08	4.76	NA	2.63	14.29	3.23	3.70	4.44	0.00	2.56	0.00	8.00	5.13	9.09	0.00	0.00	NA	0.00	0.00	2.22	0.74	1.28	0.54	0.701863	0.867936
K	intron_retention	FCGR2B	chr1	+	chr1:161645104-161647117				chr1:161645103-161645104;chr1:161647117-161647118		20.00	7.41	19.15	NA	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	9.09	NA	NA	NA	NA	4.55	12.12	6.90	13.04	4.76	3.23	0.00	3.57	22.22	NA	7.14	NA	0.00	11.76	5.26	0.00	0.00	7.41	4.55	6.33	1.78	0.837241	1.000000
N	jcn_only_AD	PTOV1	chr19	+	chr19:50360384-50360949	chr19:50360388-50360949		chr19:50360384-50360387	chr19:50360383-50360384		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	alternative_acceptor	NCAPH2	chr22	+	chr22:50961352-50961508	chr22:50961352-50961445		chr22:50961446-50961508	chr22:50961508-50961509		100.00	98.41	100.00	100.00	100.00	94.23	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	95.95	100.00	100.00	100.00	100.00	100.00	97.98	100.00	100.00	100.00	100.00	84.62	97.30	94.12	100.00	93.75	100.00	100.00	99.20	100.00	0.80	0.544225	0.822189
K	intron_retention	TPD52L2	chr20	+	chr20:62505170-62514071				chr20:62505169-62505170;chr20:62514071-62514072		5.88	16.67	9.38	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	2.47	0.00	5.26	5.00	0.00	NA	NA	0.00	NA	7.69	5.41	NA	15.38	5.88	4.55	NA	4.35	NA	7.14	0.00	0.00	12.50	5.88	NA	2.47	2.94	0.47	0.658817	1.000000
K	intron_retention	TPT1	chr13	-	chr13:45914320-45915176				chr13:45914319-45914320;chr13:45915176-45915177		13.04	3.39	15.79	5.56	2.08	0.00	4.55	9.09	0.00	12.90	7.69	5.88	0.00	18.18	15.38	13.79	0.00	0.00	0.00	27.59	8.33	10.00	8.06	11.29	0.00	9.52	12.24	6.45	7.89	3.03	34.62	22.73	0.00	8.33	11.76	9.59	0.00	15.61	15.61	0.066999	1.000000
N	alternative_donor	CD40	chr20	+	chr20:44756864-44756968;chr20:44756848-44756968	chr20:44756876-44756968		chr20:44756848-44756863;chr20:44756864-44756875	chr20:44756847-44756848;chr20:44756863-44756864		4.12	0.00	3.00	0.00	NA	1.69	0.00	1.39	1.65	1.39	0.00	0.98	3.70	1.62	1.83	1.12	2.78	1.35	7.69	2.21	2.25	1.82	0.00	1.49	NA	2.13	2.50	3.20	0.00	1.52	1.60	1.87	0.00	1.96	0.00	1.40	0.00	1.88	1.88	0.952513	0.984606
K	cassette	RPS3A	chr4	+	chr4:152020867-152024022	chr4:152020867-152021636;chr4:152021741-152024022		chr4:152021637-152021740			98.06	97.24	94.74	98.19	98.38	97.81	99.21	98.28	94.59	99.55	99.64	99.50	99.06	94.34	95.24	99.14	99.35	99.69	97.72	97.65	96.59	99.29	98.67	98.98	98.58	93.10	95.07	98.87	98.90	99.04	94.95	93.33	97.18	99.12	98.69	98.54	98.15	96.30	-1.85	0.070140	0.625132
N	alternative_donor	TNFAIP2	chr14	+	chr14:103590289-103590711;chr14:103589821-103590711	chr14:103590251-103590711		chr14:103589821-103590250;chr14:103590251-103590288	chr14:103589820-103589821;chr14:103590250-103590251		23.53	10.53	10.91	NA	NA	NA	4.55	5.71	1.12	0.92	5.26	2.73	6.06	2.17	2.82	1.24	4.35	0.52	NA	44.83	NA	6.12	18.75	1.50	13.64	1.85	4.00	1.85	4.55	3.81	37.50	3.57	NA	10.00	7.69	1.34	8.29	14.62	6.33	0.236228	0.607618
K	jcn_only_AD	KLC1	chr14	+	chr14:104145883-104153417;chr14:104151374-104153417	chr14:104145856-104153417					58.70	47.69	42.42	39.29	33.33	39.13	41.38	20.00	19.44	25.00	24.32	21.05	26.83	20.83	27.91	25.49	28.21	9.52	36.84	61.36	30.43	23.53	34.88	60.87	56.76	37.04	45.71	28.57	28.57	28.95	50.94	42.11	49.06	48.72	51.28	45.45	44.53	43.99	-0.55	0.856386	0.930026
N	jcn_only_AD	PML	chr15	+	chr15:74330297-74335329;chr15:74326947-74335329;chr15:74333912-74335329	chr15:74326872-74335329		chr15:74326872-74326946;chr15:74326947-74330296;chr15:74330297-74333911	chr15:74326871-74326872;chr15:74326946-74326947;chr15:74330296-74330297		100.00	100.00	100.00	91.67	100.00	97.74	100.00	99.11	100.00	100.00	NA	100.00	100.00	100.00	99.10	100.00	NA	91.67	100.00	98.88	100.00	NA	NA	96.00	100.00	100.00	100.00	100.00	NA	97.89	97.80	100.00	100.00	100.00	NA	97.48	100.00	99.56	-0.44	0.110351	0.646283
N	intron_retention	CPM	chr12	-	chr12:69236110-69249115				chr12:69236109-69236110;chr12:69249115-69249116		100.00	100.00	100.00	91.30	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	100.00	94.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	97.44	95.77	99.05	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.861517	1.000000
K	intron_retention		chr17	+	chr17:48762237-48764896				chr17:48762236-48762237;chr17:48764896-48764897		2.08	9.90	7.08	0.00	6.12	NA	3.12	NA	NA	0.00	3.85	4.35	0.00	NA	0.00	NA	0.00	NA	6.82	2.63	6.56	0.00	0.94	3.12	0.00	3.33	4.00	0.00	2.47	4.76	3.03	2.90	8.89	4.35	5.00	3.12	4.97	2.83	-2.14	0.776242	1.000000
K	alternative_acceptor	REC8	chr14	+	chr14:24649113-24649232	chr14:24649113-24649215		chr14:24649216-24649232	chr14:24649232-24649233		96.97	100.00	96.67	88.89	100.00	96.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	95.83	97.22	NA	90.00	100.00	100.00	95.00	100.00	NA	NA	100.00	97.37	100.00	95.00	100.00	100.00	100.00	100.00	96.40	-3.60	0.143993	0.646820
N	alternative_acceptor	C9orf3	chr9	+	chr9:90318133-90322751	chr9:90318133-90321046		chr9:90321047-90322751	chr9:90322751-90322752		96.77	100.00	97.52	100.00	94.59	100.00	100.00	99.30	100.00	97.73	100.00	100.00	100.00	100.00	97.30	99.30	99.50	100.00	80.00	96.00	100.00	97.78	97.23	98.61	NA	100.00	100.00	100.00	100.00	99.17	92.31	96.43	NA	97.27	97.42	99.04	100.00	98.03	-1.97	0.670086	0.880186
N	jcn_only_AA	METTL17	chr14	+	chr14:21464452-21464685	chr14:21464452-21464664		chr14:21464665-21464685	chr14:21464685-21464686		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	MTCH1	chr6	-	chr6:36937292-36937814;chr6:36936751-36937814	chr6:36937560-36937814		chr6:36936751-36937291;chr6:36937292-36937559	chr6:36936750-36936751;chr6:36937291-36937292		10.84	8.70	8.68	11.24	10.50	6.67	3.18	3.39	3.47	3.57	2.54	1.97	4.19	3.81	9.93	6.67	3.37	1.88	6.33	7.89	6.79	13.64	12.32	14.36	11.11	10.16	13.39	14.35	13.66	9.96	6.92	9.39	6.54	10.74	10.68	9.87	6.44	7.40	0.97	0.782628	0.917646
N	alternative_acceptor		chr11	+	chr11:60160260-60164034;chr11:60160260-60162418;chr11:60160260-60161301;chr11:60160260-60162423	chr11:60160260-60161259		chr11:60161260-60161301;chr11:60161302-60162418;chr11:60162419-60162423;chr11:60162424-60164034	chr11:60161301-60161302;chr11:60162418-60162419;chr11:60162423-60162424;chr11:60164034-60164035		97.59	98.25	98.26	95.45	98.25	100.00	99.46	97.59	97.37	95.92	100.00	98.68	99.03	99.15	NA	96.67	100.00	100.00	93.69	95.29	100.00	94.12	97.16	96.08	100.00	97.02	100.00	100.00	96.23	95.24	98.36	98.84	97.06	97.27	99.44	96.49	98.64	97.59	-1.05	0.711957	0.890693
N	alternative_acceptor	PLEKHM2	chr1	+	chr1:16059224-16060291	chr1:16059224-16060256		chr1:16060257-16060291	chr1:16060291-16060292		3.41	5.62	2.72	1.40	1.17	2.40	0.67	0.65	0.00	0.00	0.61	0.00	0.00	1.21	0.96	0.52	0.72	0.00	3.60	3.68	2.63	2.98	2.07	0.97	1.92	2.99	3.49	1.92	1.90	1.02	5.63	4.23	5.15	3.41	1.90	2.31	2.76	3.20	0.44	0.934490	0.981619
N	cassette	PLEKHM2	chr1	+	chr1:16057753-16058844;chr1:16057753-16058928	chr1:16057753-16058444;chr1:16058544-16058844,chr1:16058544-16058928		chr1:16058445-16058543			96.00	95.89	93.75	100.00	98.77	92.00	100.00	100.00	100.00	96.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	100.00	94.62	96.12	95.65	100.00	100.00	96.43	98.65	100.00	98.70	93.28	94.59	91.07	95.04	94.51	96.20	100.00	98.73	-1.27	0.985580	0.996694
N	jcn_only_AA	TBC1D2	chr9	-	chr9:100961867-100962534;chr9:100961819-100962534	chr9:100961871-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		96.88	100.00	94.64	94.64	91.61	83.33	93.18	95.92	93.75	91.30	97.27	NA	89.58	94.59	100.00	91.11	95.24	NA	87.50	95.16	90.32	93.18	96.00	100.00	100.00	94.03	92.31	85.92	87.95	90.91	92.25	89.25	93.43	93.67	92.55	91.67	93.31	94.88	1.57	0.712797	0.873712
K	cassette	COX16,SYNJ2BP-COX16	chr14	-	chr14:70795954-70826235	chr14:70795954-70809374;chr14:70809447-70826235		chr14:70809375-70809446			85.06	74.68	82.14	89.06	87.88	80.77	94.70	95.83	95.45	94.32	96.72	94.37	92.20	95.65	93.42	94.44	96.27	95.06	82.03	82.28	91.41	91.38	90.43	90.00	91.36	93.55	89.42	94.92	90.30	94.05	74.42	81.42	85.35	89.58	91.94	88.71	88.35	89.31	0.95	0.822924	0.941649
N	cassette	HMGCL	chr1	-	chr1:24134706-24143164;chr1:24134814-24143164	chr1:24134706-24137225,chr1:24134814-24137225;chr1:24137290-24143164		chr1:24137226-24137289			86.21	100.00	97.14	NA	95.24	NA	95.00	88.89	87.50	NA	80.00	NA	86.96	87.50	92.31	NA	NA	NA	81.25	93.94	92.00	NA	93.10	NA	100.00	92.86	97.14	83.33	88.89	90.91	95.83	85.00	80.00	93.33	95.24	80.00	90.98	90.88	-0.10	0.935629	0.984024
N	alternative_acceptor	AP1B1	chr22	-	chr22:29727906-29730253;chr22:29727875-29730253;chr22:29729534-29730253	chr22:29728044-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		0.00	3.67	2.04	0.00	1.27	NA	0.70	0.00	0.00	1.37	0.50	0.00	0.77	0.00	0.00	1.18	0.30	1.27	0.00	0.00	0.00	5.00	0.55	4.00	3.51	0.00	0.00	3.33	1.84	0.00	2.70	0.00	1.92	1.75	0.00	1.05	1.34	0.00	-1.34	0.124592	0.611000
N	cassette	IL10RA	chr11	+	chr11:117857250-117859096;chr11:117857250-117859102	chr11:117857250-117857398;chr11:117857529-117859102,chr11:117857529-117859096		chr11:117857399-117857528			6.98	8.70	7.50	NA	NA	NA	16.83	19.42	17.07	17.91	16.78	24.90	16.13	15.54	13.06	13.91	18.99	24.93	NA	9.47	0.00	12.12	9.52	13.00	16.67	14.52	10.32	14.29	13.64	15.89	4.23	6.72	0.00	12.05	9.33	11.31	16.13	12.00	-4.13	0.994780	0.998405
K	alternative_first_exon	PLTP	chr20	-	chr20:44538710-44539790	chr20:44538710-44539509	chr20:44539791-44539890	chr20:44539510-44539576			16.13	0.00	41.94	6.67	10.53	NA	0.53	3.54	8.51	0.00	1.88	0.00	0.67	1.74	5.88	0.38	1.58	0.59	11.11	21.74	14.81	5.83	4.83	4.11	0.00	11.36	14.29	3.92	1.18	3.77	6.15	12.07	11.11	6.61	4.76	4.80	0.60	8.75	8.15	0.146393	0.339886
N	alternative_acceptor	HMGA2	chr12	+	chr12:53846161-53848533	chr12:53846161-53848509		chr12:53848510-53848533	chr12:53848533-53848534		100.00	100.00	98.53	NA	100.00	NA	98.32	100.00	100.00	96.12	93.85	95.79	95.93	100.00	100.00	100.00	96.67	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.92	100.00	100.00	99.16	100.00	0.84	0.713060	0.891413
N	alternative_donor	RALGDS	chr9	-	chr9:135974150-135975654	chr9:135974150-135974852		chr9:135974853-135975654	chr9:135975654-135975655		6.82	2.99	8.33	8.00	2.22	0.00	5.00	3.70	7.69	1.33	2.63	4.17	2.63	3.33	5.00	3.57	3.28	4.88	9.68	6.09	5.00	4.60	4.69	6.19	8.33	6.52	7.58	1.96	4.17	1.47	10.53	8.82	14.89	5.04	10.39	4.96	6.67	6.30	-0.36	0.632731	0.834022
K	cassette	MIF4GD	chr17	-	chr17:73264274-73266194	chr17:73264274-73265427;chr17:73265551-73266194		chr17:73265428-73265550			4.76	14.58	14.29	NA	15.79	NA	14.29	10.00	12.00	7.69	17.86	0.00	15.91	11.11	11.54	14.29	15.15	NA	9.09	0.00	0.00	NA	13.89	NA	NA	0.00	11.76	NA	14.29	NA	NA	15.79	6.25	10.00	13.33	16.67	14.29	4.76	-9.53	0.054135	0.587075
K	intron_retention		chr17	-	chr17:62497262-62497378				chr17:62497261-62497262;chr17:62497378-62497379		99.12	100.00	98.58	96.97	100.00	NA	100.00	95.35	97.37	NA	100.00	NA	98.11	100.00	98.13	95.24	95.00	NA	100.00	97.29	100.00	99.57	98.20	97.89	100.00	98.56	99.19	96.95	98.54	98.41	97.08	97.09	100.00	98.00	99.26	98.31	100.00	97.93	-2.07	0.182607	1.000000
N	jcn_only_AD	MS4A6A	chr11	-	chr11:59940603-59942874;chr11:59940603-59943036	chr11:59940603-59942978		chr11:59942875-59942978;chr11:59942979-59943036	chr11:59942978-59942979;chr11:59943036-59943037		7.74	7.72	13.51	3.45	5.80	5.03	2.56	5.13	15.38	2.70	5.38	2.52	4.12	5.41	NA	6.87	5.56	3.09	8.00	6.35	0.00	8.41	8.02	6.62	3.45	7.61	5.88	7.44	6.05	6.48	5.26	15.38	8.33	7.69	7.14	8.30	5.92	5.88	-0.04	0.649317	0.818639
K	alternative_last_exon	LRCH3	chr3	+	chr3:197602647-197612150;chr3:197602647-197610411	chr3:197602647-197607382	chr3:197610412-197615307	chr3:197607383-197607628			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	5.00	NA	6.25	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.03	0.00	0.00	0.00	0.373901	0.541211
N	alternative_donor	BCL7C,KNOP1	chr16	-	chr16:30900267-30903906	chr16:30900267-30903896		chr16:30903897-30903906	chr16:30903906-30903907		0.00	1.18	0.00	1.41	0.62	0.67	1.41	0.00	0.00	1.25	1.04	0.00	0.00	NA	0.00	0.00	0.92	0.00	0.48	0.00	0.66	3.70	0.00	0.00	0.00	5.00	2.08	0.00	0.00	0.00	4.55	0.00	0.00	3.33	0.00	0.00	0.24	0.00	-0.24	0.303360	0.650093
K	cassette	THAP3	chr1	+	chr1:6688752-6690347	chr1:6688752-6689702;chr1:6689785-6690347		chr1:6689703-6689784			5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.45	0.00	4.35	0.00	0.00	0.00	6.90	NA	0.00	0.00	NA	NA	NA	5.88	0.00	0.00	0.00	0.00	4.00	0.00	3.57	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.791059	0.936947
N	jcn_only_AA		chr1	+	chr1:161476382-161477388;chr1:161476382-161479429	chr1:161476382-161479609		chr1:161477389-161479429;chr1:161479430-161479609	chr1:161479429-161479430;chr1:161479609-161479610		99.77	100.00	100.00	94.12	100.00	71.43	100.00	100.00	100.00	99.80	100.00	99.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.190123	0.663989
K	intron_retention	C17orf62	chr17	-	chr17:80405498-80407045				chr17:80405497-80405498;chr17:80407045-80407046		5.22	6.56	14.81	NA	3.57	NA	1.20	1.24	1.01	0.00	0.00	0.00	1.79	1.27	3.46	0.00	1.61	2.94	6.25	9.59	2.38	NA	5.26	21.43	18.18	5.56	7.25	4.17	4.35	10.26	0.00	7.79	12.50	6.67	13.16	11.59	6.40	3.25	-3.16	0.974594	1.000000
N	jcn_only_AD	VPS18	chr15	+	chr15:41193221-41194813;chr15:41191197-41194813;chr15:41193213-41194813	chr15:41191407-41194813					15.15	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	6.90	0.00	12.50	4.00	0.00	8.33	0.00	0.00	0.00	2.70	0.00	13.33	7.69	0.00	10.53	4.17	9.09	0.00	3.45	3.45	0.198349	0.657607
N	alternative_donor	TBC1D17	chr19	+	chr19:50385658-50386020	chr19:50385665-50386020		chr19:50385658-50385664	chr19:50385657-50385658		50.00	0.00	35.71	NA	21.43	NA	0.00	NA	13.33	NA	NA	NA	0.00	40.00	18.52	0.00	8.33	NA	6.25	47.37	18.18	NA	31.03	NA	0.00	58.33	22.22	NA	18.75	NA	13.33	18.52	6.67	30.00	40.91	33.33	0.00	47.37	47.37	0.006046	0.178980
K	alternative_last_exon	MYL6	chr12	+	chr12:56554105-56555170;chr12:56554105-56556047	chr12:56554105-56554409	chr12:56555171-56555371;chr12:56556048-56556115	chr12:56554410-56554729			4.40	3.03	4.70	2.63	2.54	2.09	5.35	9.15	4.27	6.59	5.65	6.70	6.58	8.72	5.87	5.45	7.16	7.57	2.36	5.45	2.74	4.09	3.40	4.00	2.46	8.54	4.38	6.21	4.52	4.35	4.75	4.72	2.42	3.93	3.43	3.97	2.75	6.99	4.25	0.022972	0.210459
N	jcn_only_AD	FYB	chr5	-	chr5:39130715-39134309	chr5:39130715-39134299		chr5:39134300-39134309	chr5:39134309-39134310		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	5.88	NA	NA	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	LGMN	chr14	-	chr14:93170707-93176016				chr14:93170706-93170707;chr14:93176016-93176017		14.29	25.40	NA	5.26	41.82	0.00	0.00	7.69	NA	0.00	5.26	0.00	11.90	0.00	7.69	2.38	5.97	0.00	9.68	12.50	11.76	0.00	15.27	1.47	40.43	15.00	21.43	7.69	34.55	4.55	14.29	6.67	10.17	0.00	14.29	2.38	11.04	13.39	2.36	0.992482	1.000000
N	alternative_acceptor	EML3	chr11	-	chr11:62377169-62378350	chr11:62378241-62378350		chr11:62377169-62378240	chr11:62377168-62377169		6.67	0.00	12.90	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	7.69	3.33	NA	NA	NA	NA	NA	0.00	9.09	0.00	7.14	4.55	0.00	0.00	NA	NA	0.00	NA	10.00	7.14	14.29	0.00	3.33	3.33	0.182059	0.660713
N	alternative_acceptor	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556573;chr11:62555000-62556494;chr11:62555000-62556597	chr11:62555000-62556658		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	7.14	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.22	11.54	0.00	11.63	0.00	NA	0.00	0.00	0.00	11.54	26.09	0.00	16.95	19.05	8.82	0.00	0.00	0.00	0.00	0.00	0.819068	0.938145
K	intron_retention	CDK16	chrX	+	chrX:47086499-47086579				chrX:47086498-47086499;chrX:47086579-47086580		0.00	2.56	5.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	8.11	0.00	3.70	3.57	0.00	2.56	0.00	0.00	0.00	0.00	12.82	8.51	4.17	3.12	0.00	3.80	0.00	1.28	1.28	0.689650	1.000000
N	jcn_only_AD	TFRC	chr3	-	chr3:9803221-9803318	chr3:9803221-9803314		chr3:9803315-9803318	chr3:9803318-9803319		100.00	100.00	100.00	93.75	96.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.06	100.00	100.00	100.00	95.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.12	100.00	96.83	100.00	100.00	100.00	0.00	0.174754	0.657607
K	intron_retention		chr1	-	chr1:161019125-161019213				chr1:161019124-161019125;chr1:161019213-161019214		6.42	12.50	7.21	NA	10.34	NA	0.98	0.00	0.00	0.00	0.00	NA	2.14	0.63	1.11	0.00	0.00	NA	12.50	9.59	2.78	NA	9.52	NA	25.45	3.92	8.42	6.90	5.88	NA	7.69	8.20	11.11	5.00	9.88	7.14	11.80	5.17	-6.63	0.447234	1.000000
K	jcn_only_AD	SHARPIN	chr8	-	chr8:145154973-145157953	chr8:145154973-145155645		chr8:145155646-145157953	chr8:145157953-145157954		0.00	0.00	1.85	18.18	3.45	NA	1.96	0.00	0.00	0.00	0.00	0.00	0.00	6.90	6.25	0.00	1.30	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	10.53	5.13	0.00	0.00	0.00	0.00	6.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.521751	0.754861
N	alternative_acceptor	TARDBP	chr1	+	chr1:11082235-11083212	chr1:11082235-11083210		chr1:11083211-11083212	chr1:11083212-11083213		100.00	100.00	96.43	NA	100.00	NA	100.00	92.31	100.00	96.55	100.00	NA	95.83	100.00	100.00	100.00	97.06	NA	NA	91.67	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.59	90.91	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	0.00	0.437268	0.747010
K	intron_retention	GGA2	chr16	-	chr16:23478152-23478309				chr16:23478151-23478152;chr16:23478309-23478310		97.06	100.00	89.47	100.00	93.13	NA	93.15	93.33	100.00	100.00	95.70	NA	94.38	92.86	100.00	96.43	95.45	NA	95.50	100.00	92.68	100.00	96.36	93.33	92.86	100.00	96.30	100.00	96.60	NA	100.00	96.30	100.00	91.53	94.21	88.46	94.94	98.53	3.59	0.762885	1.000000
K	intron_retention		chr22	+	chr22:38040968-38041371				chr22:38040967-38040968;chr22:38041371-38041372		0.00	0.00	7.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.72	NA	0.00	0.00	0.00	0.00	0.56	0.00	0.00	1.33	0.00	0.00	1.41	NA	8.33	2.99	4.88	NA	0.00	NA	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.720451	1.000000
N	cassette	MYO1G	chr7	-	chr7:45003762-45005235;chr7:45003762-45004543	chr7:45003762-45004013;chr7:45004119-45004543,chr7:45004119-45005235		chr7:45004014-45004118			95.63	97.26	94.95	97.22	91.67	95.82	100.00	99.53	100.00	100.00	100.00	100.00	100.00	99.43	100.00	100.00	100.00	100.00	96.92	98.03	96.40	100.00	100.00	100.00	86.96	96.65	96.27	98.61	100.00	100.00	94.76	94.23	100.00	98.36	96.43	98.09	98.63	97.34	-1.29	0.834658	0.944391
K	intron_retention		chr11	-	chr11:93465458-93466252				chr11:93465457-93465458;chr11:93466252-93466253		9.09	0.00	14.29	1.82	4.69	1.72	0.00	NA	10.00	11.11	12.82	7.69	7.69	NA	0.00	7.32	4.17	5.00	0.00	7.69	7.50	5.00	4.17	7.14	0.00	14.29	0.00	0.00	4.26	2.86	2.17	6.85	3.53	5.17	7.50	4.00	0.00	8.39	8.39	0.176734	1.000000
N	alternative_acceptor	NAA20	chr20	+	chr20:20003125-20006320;chr20:20003125-20004065	chr20:20003125-20005759		chr20:20004066-20005759;chr20:20005760-20006320	chr20:20005759-20005760;chr20:20006320-20006321		1.75	5.00	1.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	2.08	0.00	2.08	2.35	2.04	0.00	0.00	2.08	0.00	0.00	0.00	0.00	3.33	0.00	3.03	1.96	2.44	0.00	0.00	0.00	0.839175	0.942814
N	cassette	CNPPD1	chr2	-	chr2:220038190-220039499	chr2:220038190-220038867;chr2:220038930-220039499		chr2:220038868-220038929			100.00	94.12	96.83	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor		chr5	.	chr5:176943514-176943725;chr5:176943485-176943725;chr5:176943518-176943725	chr5:176943449-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		90.24	95.83	81.48	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.63	72.73	75.68	100.00	98.80	100.00	100.00	95.83	100.00	100.00	95.35	92.86	82.35	100.00	83.33	92.86	100.00	92.31	87.50	86.05	69.23	94.44	90.91	91.43	97.23	93.03	-4.19	0.994929	0.998086
N	intron_retention		chr19	+	chr19:9273637-9273730				chr19:9273636-9273637;chr19:9273730-9273731		94.12	100.00	96.30	91.67	91.30	100.00	100.00	80.00	100.00	95.24	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	88.89	93.10	100.00	90.70	100.00	92.86	100.00	100.00	89.47	88.24	100.00	93.55	94.59	90.20	100.00	93.94	100.00	100.00	93.84	-6.16	0.911273	1.000000
K	jcn_only_AA	NSUN5	chr7	-	chr7:72718402-72718743	chr7:72718406-72718743		chr7:72718402-72718405	chr7:72718401-72718402		76.47	87.10	68.75	NA	93.33	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	90.91	84.62	78.57	NA	100.00	NA	100.00	100.00	73.91	NA	NA	NA	87.50	87.50	78.57	NA	90.91	100.00	90.91	87.50	-3.41	0.800688	0.916010
K	intron_retention		chr22	+	chr22:44581753-44583655				chr22:44581752-44581753;chr22:44583655-44583656		21.21	19.15	27.03	NA	15.79	NA	4.26	4.76	4.55	0.00	2.74	1.18	5.34	0.00	10.53	2.13	1.47	1.64	20.00	22.58	18.18	14.81	18.56	11.90	25.64	31.82	28.12	21.43	20.39	14.29	NA	26.19	18.87	13.04	14.74	17.54	19.01	21.21	2.20	0.997254	1.000000
N	alternative_acceptor	AMDHD2	chr16	+	chr16:2578150-2578236	chr16:2578150-2578210		chr16:2578211-2578236	chr16:2578236-2578237		7.69	0.00	9.09	0.00	3.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.25	0.00	NA	0.00	NA	0.00	9.09	NA	0.00	0.00	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	8.39	8.39	0.009492	0.466251
K	jcn_only_AA	STRN4	chr19	-	chr19:47230804-47231150;chr19:47230949-47231150	chr19:47230825-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		17.39	31.25	37.50	NA	NA	NA	26.47	21.21	17.14	9.38	20.93	8.00	19.57	12.20	34.21	25.00	13.16	25.00	NA	19.23	NA	25.00	30.43	23.53	0.00	23.33	24.00	14.29	12.50	27.27	30.77	29.17	NA	21.74	20.00	30.00	23.02	20.22	-2.80	0.861581	0.944686
K	cassette	SAP30BP	chr17	+	chr17:73664706-73689519	chr17:73664706-73667895;chr17:73667944-73689519		chr17:73667896-73667943			96.55	100.00	95.77	100.00	100.00	100.00	100.00	98.88	100.00	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	98.65	97.50	100.00	100.00	98.00	75.00	96.26	95.77	100.00	100.00	100.00	96.55	96.67	100.00	100.00	100.00	98.41	100.00	97.60	-2.40	0.657211	0.874582
N	cassette	CHI3L1	chr1	-	chr1:203149006-203150289;chr1:203147702-203150289;chr1:203148714-203150289	chr1:203147702-203149597,chr1:203149006-203149597,chr1:203148714-203149597;chr1:203149781-203150289		chr1:203149598-203149780			87.22	83.76	83.74	91.18	84.78	100.00	91.59	94.62	93.82	91.73	89.47	91.11	88.24	92.11	90.20	82.26	77.42	88.00	91.67	88.71	89.60	86.15	83.78	88.24	85.29	89.42	89.26	86.57	86.11	86.32	89.61	87.46	90.84	84.91	86.76	86.70	89.54	89.52	-0.02	0.354100	0.709176
K	intron_retention	ADAMTSL4	chr1	+	chr1:150530626-150530948				chr1:150530625-150530626;chr1:150530948-150530949		14.29	9.30	33.33	0.00	10.00	5.41	0.00	6.67	6.25	6.67	0.00	NA	12.50	2.70	8.93	NA	9.09	NA	5.26	27.78	15.38	NA	0.00	NA	10.87	28.57	22.73	22.22	11.11	NA	NA	20.00	10.00	NA	15.38	26.09	9.65	14.29	4.64	0.357439	1.000000
K	jcn_only_AD	SNRPB	chr20	-	chr20:2446466-2448252	chr20:2446466-2447837					1.93	1.95	2.11	2.56	1.51	1.10	0.87	1.65	1.01	0.77	0.40	0.49	0.88	1.75	1.42	1.43	0.98	0.87	1.99	2.53	2.44	3.00	1.68	0.73	0.00	0.81	1.43	1.08	1.96	1.68	5.93	3.33	1.05	2.24	0.78	2.76	0.97	1.84	0.87	0.145982	0.657607
N	alternative_acceptor	MTMR14	chr3	+	chr3:9729576-9730379;chr3:9729576-9729855	chr3:9729576-9729947		chr3:9729856-9729947;chr3:9729948-9730379	chr3:9729947-9729948;chr3:9730379-9730380		1.69	2.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	1.59	0.00	0.76	2.63	2.70	1.72	2.00	0.00	1.22	0.00	1.52	5.21	3.19	1.23	0.77	1.27	1.00	1.60	0.60	0.908542	0.970723
N	cassette	HDAC5	chr17	-	chr17:42162044-42163939	chr17:42162044-42162389;chr17:42162524-42163939		chr17:42162390-42162523			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	NA	95.83	100.00	100.00	NA	97.22	NA	94.44	100.00	100.00	NA	100.00	NA	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.180090	0.709176
N	alternative_acceptor	LACC1,RP11-65B7.2	chr13	+	chr13:44458073-44462892	chr13:44458073-44459054		chr13:44459055-44462892	chr13:44462892-44462893		8.06	27.27	2.74	NA	48.15	NA	2.31	1.89	0.00	6.67	10.47	7.69	2.68	3.00	2.38	5.43	11.81	NA	NA	5.17	NA	12.50	14.94	14.29	NA	2.08	3.85	12.50	18.42	NA	19.35	12.50	50.00	14.58	9.84	12.00	14.97	4.08	-10.89	0.311472	0.709013
K	intron_retention	MFSD10	chr4	-	chr4:2933193-2933281				chr4:2933192-2933193;chr4:2933281-2933282		0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	2.74	0.00	1.56	12.00	5.66	0.00	0.00	7.14	0.00	6.45	2.17	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.661899	1.000000
N	alternative_acceptor	KIAA0368	chr9	-	chr9:114124450-114125867;chr9:114124413-114125867	chr9:114125579-114125867		chr9:114124413-114124449;chr9:114124450-114125578	chr9:114124412-114124413;chr9:114124449-114124450		35.56	7.41	37.50	11.61	14.66	5.76	9.68	15.00	16.67	9.76	11.43	12.12	13.64	23.81	18.92	17.02	11.76	12.82	5.94	29.41	12.35	34.78	28.74	39.08	2.34	30.61	27.78	29.09	25.35	22.46	27.27	32.73	7.37	32.10	33.33	32.11	7.39	28.34	20.95	0.000423	0.242646
K	cassette	WBSCR22	chr7	+	chr7:73101231-73105245;chr7:73101231-73106925	chr7:73101231-73101328;chr7:73101426-73105245,chr7:73101426-73106925		chr7:73101329-73101425			85.00	95.00	87.10	90.91	93.48	91.67	100.00	100.00	96.30	100.00	100.00	100.00	100.00	NA	96.77	98.39	100.00	100.00	97.14	90.48	100.00	90.91	91.84	96.67	100.00	NA	100.00	100.00	92.00	96.97	90.00	88.57	91.30	91.67	94.74	94.92	98.57	90.24	-8.33	0.159139	0.709176
K	cassette	FPGS	chr9	+	chr9:130570591-130571078	chr9:130570591-130570836;chr9:130570985-130571078		chr9:130570837-130570984			80.36	79.17	77.91	92.68	81.82	91.18	97.37	95.52	97.59	98.08	100.00	100.00	97.73	98.53	98.73	97.22	100.00	100.00	91.67	82.05	92.31	93.55	79.31	88.24	NA	91.89	91.55	92.86	86.96	95.83	81.48	72.88	69.23	85.19	85.00	91.67	91.67	86.97	-4.70	0.849880	0.949907
K	intron_retention		chr20	-	chr20:3675180-3675309				chr20:3675179-3675180;chr20:3675309-3675310		5.11	21.74	3.03	NA	NA	NA	0.83	1.04	0.50	0.00	0.00	0.53	1.67	2.11	0.95	3.03	0.00	3.29	NA	5.60	0.00	NA	2.70	9.47	23.08	3.38	4.55	17.02	3.23	10.98	6.52	8.06	NA	17.24	5.00	12.26	11.70	4.25	-7.46	0.916496	1.000000
K	intron_retention	FASTK	chr7	-	chr7:150774324-150774396				chr7:150774323-150774324;chr7:150774396-150774397		26.53	25.85	31.71	37.97	30.48	35.29	4.26	NA	0.00	11.11	8.51	0.00	5.36	6.67	18.52	16.00	12.24	8.33	26.63	38.89	19.39	41.94	32.35	29.63	24.16	23.53	24.44	20.59	27.45	35.09	35.14	43.40	27.27	24.24	28.26	31.37	25.01	26.53	1.52	0.652343	1.000000
K	alternative_acceptor	NOSIP	chr19	-	chr19:50059994-50060131;chr19:50059911-50060131	chr19:50059915-50060131		chr19:50059911-50059914;chr19:50059915-50059993	chr19:50059910-50059911;chr19:50059914-50059915		3.25	0.00	0.00	0.00	3.08	2.73	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.39	0.00	2.60	0.00	0.00	0.00	0.00	0.00	2.33	0.00	5.13	0.00	2.96	1.67	2.97	0.00	0.00	0.00	0.00	0.00	0.00	0.873773	0.956197
K	jcn_only_AA	GPAA1	chr8	+	chr8:145138944-145139036;chr8:145138944-145139013	chr8:145138944-145139188		chr8:145139014-145139036;chr8:145139037-145139188	chr8:145139036-145139037;chr8:145139188-145139189		0.00	0.00	0.00	0.00	0.00	NA	0.72	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	2.08	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.36	0.00	-0.36	0.470977	0.730736
N	cassette	PNKP	chr19	-	chr19:50367661-50369655	chr19:50367661-50368383;chr19:50368684-50369655		chr19:50368384-50368683			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	88.89	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	SFPQ	chr1	-	chr1:35652724-35652803				chr1:35652723-35652724;chr1:35652803-35652804		3.70	0.00	3.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	7.14	3.49	0.39	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	15.12	8.57	4.23	0.51	0.00	0.39	0.00	1.85	1.85	0.500476	1.000000
K	jcn_only_AA	RPS9	chr19	+	chr19:54705478-54711265	chr19:54705478-54710143		chr19:54710144-54711265	chr19:54711265-54711266		96.22	96.72	96.59	95.43	96.66	94.47	98.73	97.93	98.12	96.30	97.98	97.67	98.04	97.42	96.27	97.70	97.14	96.27	95.58	97.05	95.52	96.82	97.90	97.18	96.07	95.93	95.41	95.45	96.91	96.05	94.52	96.14	93.73	96.95	96.98	97.00	96.39	96.63	0.24	0.970863	0.989156
K	intron_retention		chr11	+	chr11:67057685-67057792				chr11:67057684-67057685;chr11:67057792-67057793		3.92	0.00	2.86	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.92	5.56	0.00	NA	2.63	NA	6.25	0.00	0.00	NA	0.00	NA	0.00	0.00	2.04	NA	0.00	NA	0.00	2.56	6.45	0.00	0.00	0.00	0.96	0.00	-0.96	0.393429	1.000000
N	alternative_acceptor	RANBP3	chr19	-	chr19:5917665-5917804;chr19:5916359-5917804	chr19:5913225-5917804		chr19:5913225-5916358;chr19:5916359-5917664	chr19:5913224-5913225;chr19:5916358-5916359		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	8.33	0.00	0.00	NA	0.00	7.69	0.00	NA	0.00	NA	10.81	0.00	0.00	NA	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.964661	0.991031
N	alternative_donor	SLC11A1	chr2	+	chr2:219252679-219254592	chr2:219254495-219254592		chr2:219252679-219254494	chr2:219252678-219252679		13.56	31.43	17.37	70.37	55.56	92.31	12.31	12.50	12.33	16.90	17.20	9.38	16.44	13.39	31.25	22.73	18.85	8.16	82.76	24.24	56.34	50.00	40.68	13.33	78.12	15.15	18.15	43.64	43.75	38.46	34.04	25.71	83.33	44.93	41.18	33.33	54.78	14.36	-40.42	0.071681	0.454952
K	alternative_first_exon	SMIM19	chr8	+	chr8:42396343-42401611	chr8:42396849-42401611,chr8:42397517-42401611,chr8:42397299-42401611	chr8:42396298-42396342	None			100.00	100.00	97.56	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	NA	95.00	NA	96.43	100.00	92.86	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.973045	0.980389
K	cassette	C8orf59	chr8	-	chr8:86129732-86132534	chr8:86129732-86131551;chr8:86131593-86132534		chr8:86131552-86131592			2.50	1.67	8.06	8.82	9.09	3.23	4.23	20.00	5.56	13.85	9.32	9.09	6.82	6.90	8.33	12.86	16.07	15.69	0.00	0.00	7.81	5.41	8.05	7.89	0.00	7.41	4.35	15.22	11.83	7.27	3.57	1.96	1.54	6.98	8.93	17.14	1.60	5.24	3.63	0.204862	0.709176
N	intron_retention		chr19	-	chr19:47113179-47113415				chr19:47113178-47113179;chr19:47113415-47113416		100.00	100.00	87.76	97.30	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	86.11	100.00	100.00	100.00	100.00	97.01	100.00	100.00	100.00	100.00	100.00	92.73	93.48	100.00	100.00	97.73	96.61	93.02	100.00	100.00	98.60	97.74	100.00	98.50	-1.50	0.214021	1.000000
K	intron_retention		chr11	-	chr11:4406625-4406907				chr11:4406624-4406625;chr11:4406907-4406908		97.83	100.00	97.67	96.97	95.35	91.11	100.00	95.80	100.00	100.00	100.00	94.38	100.00	100.00	97.17	97.75	100.00	94.77	95.00	100.00	93.94	100.00	100.00	95.83	100.00	94.96	100.00	100.00	100.00	96.77	100.00	94.38	95.24	97.37	100.00	98.66	100.00	98.91	-1.09	0.960620	1.000000
K	cassette	LYPLA2	chr1	+	chr1:24120421-24120713	chr1:24120421-24120552;chr1:24120627-24120713		chr1:24120553-24120626			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor		chr5	-	chr5:179042597-179043088;chr5:179042597-179043098	chr5:179042597-179043126		chr5:179043089-179043098;chr5:179043099-179043126	chr5:179043098-179043099;chr5:179043126-179043127		96.00	100.00	95.86	100.00	100.00	100.00	100.00	100.00	98.78	100.00	100.00	100.00	100.00	100.00	99.21	100.00	100.00	100.00	100.00	96.92	100.00	97.80	100.00	97.45	100.00	100.00	98.16	100.00	100.00	100.00	95.00	97.59	100.00	97.56	97.62	97.62	100.00	98.46	-1.54	0.083627	0.475124
K	cassette	ACOT9	chrX	-	chrX:23726062-23739997	chrX:23726062-23731251;chrX:23731326-23739997		chrX:23731252-23731325			81.20	100.00	88.24	87.50	100.00	85.71	100.00	90.27	89.43	95.24	94.34	92.59	93.33	89.50	91.61	93.62	90.57	98.57	81.25	92.50	85.71	94.12	95.00	93.06	70.83	84.02	85.71	90.91	95.45	90.00	79.73	85.83	77.78	91.00	89.23	87.62	87.29	86.76	-0.53	0.860870	0.951512
K	jcn_only_AD	EWSR1	chr22	+	chr22:29695271-29695588	chr22:29695322-29695588		chr22:29695271-29695321	chr22:29695270-29695271		95.66	97.94	97.56	96.12	96.23	95.24	96.67	94.44	99.06	90.51	94.24	89.52	99.32	97.06	92.97	89.56	94.38	90.06	96.64	94.74	96.91	94.15	95.00	93.58	98.32	95.73	96.01	96.24	93.85	94.25	95.04	95.46	96.79	96.32	95.10	94.28	97.37	95.35	-2.02	0.004453	0.177805
N	alternative_donor	EMC8	chr16	-	chr16:85814887-85822579	chr16:85814887-85819828		chr16:85819829-85822579	chr16:85822579-85822580		0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	2.38	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.70	2.70	2.17	0.00	0.00	0.00	0.363217	0.650093
N	cassette	HNRNPM	chr19	+	chr19:8539129-8550486;chr19:8533719-8550486	chr19:8539129-8548041,chr19:8533719-8548041;chr19:8548096-8550486		chr19:8548042-8548095			71.03	85.00	69.60	81.82	85.33	82.14	84.62	71.93	76.36	80.97	79.55	75.69	82.93	77.27	80.00	84.53	78.88	77.65	80.95	66.06	68.87	82.47	83.61	76.88	100.00	67.31	73.28	80.95	85.96	80.27	59.52	62.04	79.55	79.20	81.61	73.75	83.78	69.17	-14.61	0.001790	0.140810
N	cassette	U2AF1,U2AF1L5	chr21	-	chr21:44520630-44524424;chr21:44515854-44524424	chr21:44520630-44521475,chr21:44515854-44521475;chr21:44521543-44524424		chr21:44521476-44521542			25.27	34.59	27.97	10.00	17.08	11.88	23.96	12.96	24.64	14.36	23.73	16.67	31.01	13.51	18.18	12.98	22.61	13.68	27.91	22.58	28.41	14.36	20.76	10.87	41.03	28.57	32.26	13.78	18.85	10.42	42.31	36.08	37.50	18.60	21.08	14.47	32.80	23.92	-8.88	0.137432	0.709176
N	jcn_only_AD		chr3	-	chr3:129288801-129289432;chr3:129288801-129289721	chr3:129288801-129289628		chr3:129289433-129289628;chr3:129289629-129289721	chr3:129289628-129289629;chr3:129289721-129289722		98.41	94.95	99.15	NA	100.00	NA	100.00	100.00	100.00	98.32	100.00	100.00	100.00	100.00	99.23	99.21	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	97.92	100.00	100.00	0.00	0.537716	0.758185
K	alternative_donor	FZR1	chr19	+	chr19:3534512-3534792	chr19:3534521-3534792		chr19:3534512-3534520	chr19:3534511-3534512		3.39	0.00	4.00	10.34	2.56	5.43	4.00	7.89	3.03	7.14	8.33	10.00	3.70	6.67	8.70	8.57	3.45	3.12	2.63	6.38	2.17	7.41	8.33	8.70	6.25	2.78	4.44	7.69	4.55	13.64	4.76	1.33	3.28	7.50	8.82	5.66	3.49	5.57	2.08	0.116583	0.529698
N	coord_cassette	TTC7A	chr2	+	chr2:47238575-47256362	chr2:47238575-47250546;chr2:47250605-47251425;chr2:47251499-47256362		chr2:47250547-47250604;chr2:47251426-47251498			100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	83.33	NA	NA	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AD	LRRC47,WDR77	chr1	-	chr1:3699328-3700559	chr1:3699328-3700333					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	GPSM3	chr6	-	chr6:32160028-32160248	chr6:32160050-32160248		chr6:32160028-32160049	chr6:32160027-32160028		2.08	0.00	2.52	0.00	1.35	0.00	1.04	2.84	2.64	4.46	2.30	5.45	1.02	2.39	1.27	4.65	3.14	4.30	0.00	2.53	2.63	0.00	1.25	2.56	0.00	1.75	0.66	0.00	4.46	3.70	0.00	2.33	0.00	0.00	2.44	1.37	0.00	2.24	2.24	0.010402	0.482846
K	intron_retention	CLN3	chr16	-	chr16:28493704-28493797				chr16:28493703-28493704;chr16:28493797-28493798		4.05	10.71	5.71	0.00	8.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	6.12	0.00	11.54	11.67	6.98	24.00	4.00	8.70	8.00	8.33	6.25	4.00	8.33	10.91	4.17	7.14	5.00	8.48	4.00	-4.48	0.387363	1.000000
K	intron_retention	MALAT1	chr11	+	chr11:65272750-65273061				chr11:65272749-65272750;chr11:65273061-65273062		100.00	100.00	100.00	89.80	100.00	85.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.77	100.00	98.67	100.00	96.30	96.43	97.78	95.83	100.00	100.00	96.55	100.00	100.00	100.00	100.00	0.00	0.424300	1.000000
K	coord_cassette	ZBTB8OS	chr1	-	chr1:33093146-33100368	chr1:33093146-33099245;chr1:33099329-33099551;chr1:33099674-33100368		chr1:33099246-33099328;chr1:33099552-33099673			93.33	84.38	92.00	82.35	85.37	78.57	90.91	81.82	88.89	81.82	87.88	87.50	85.71	90.00	94.74	85.00	80.00	86.67	75.00	78.57	87.50	81.82	92.00	81.82	86.21	73.33	90.48	100.00	87.10	87.50	83.33	89.47	92.31	75.00	95.24	80.00	85.96	82.57	-3.39	0.559721	0.748909
K	alternative_last_exon	FBXL12	chr19	-	chr19:9922394-9929220	chr19:9923951-9929220	chr19:9920943-9922393	chr19:9923907-9923950			0.00	0.00	0.00	NA	0.00	NA	5.26	3.70	3.70	2.78	4.55	5.26	0.00	12.90	11.11	10.00	3.57	4.55	NA	0.00	0.00	3.85	3.45	3.33	NA	3.70	7.41	5.56	4.17	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	1.85	1.85	0.419906	0.576402
K	jcn_only_AD	PLOD3,ZC3HC1	chr7	-	chr7:100859302-100859477	chr7:100859302-100859443		chr7:100859444-100859477	chr7:100859477-100859478		100.00	100.00	90.91	NA	NA	NA	100.00	96.43	100.00	100.00	98.01	98.77	97.76	100.00	100.00	95.88	97.80	100.00	NA	100.00	NA	85.71	89.39	87.50	100.00	85.71	100.00	100.00	96.08	100.00	90.00	NA	NA	93.62	93.62	95.31	100.00	98.22	-1.78	0.166708	0.657607
K	alternative_donor	HAUS4	chr14	-	chr14:23424386-23425954;chr14:23424386-23426124	chr14:23424386-23426132		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		29.41	31.58	29.17	NA	NA	NA	32.79	26.32	29.73	27.78	36.59	27.27	30.61	30.43	40.00	46.67	42.86	NA	NA	33.33	30.00	NA	47.06	NA	45.45	29.41	36.84	NA	57.14	NA	NA	33.33	NA	NA	64.29	NA	32.19	29.41	-2.78	0.225470	0.597397
K	intron_retention		chr20	+	chr20:42089239-42089342				chr20:42089238-42089239;chr20:42089342-42089343		1.69	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	7.84	0.00	1.52	2.44	2.99	0.00	2.86	1.32	0.00	0.00	0.00	14.52	6.82	2.86	3.47	1.67	1.47	0.00	2.27	2.27	0.296455	1.000000
K	alternative_acceptor	AP2A2	chr11	+	chr11:984754-985434	chr11:984754-985431		chr11:985432-985434	chr11:985434-985435		9.09	16.36	13.51	NA	10.00	NA	15.06	16.67	15.38	12.12	14.86	15.79	16.74	13.04	6.90	12.90	14.93	8.33	NA	23.53	NA	12.50	17.65	25.00	9.68	11.54	13.64	23.53	14.63	NA	35.71	23.08	23.08	19.23	14.12	17.86	16.36	14.86	-1.50	0.662550	0.877732
N	intron_retention		chr1	+	chr1:22970208-22973719				chr1:22970207-22970208;chr1:22973719-22973720		30.43	25.00	NA	NA	21.62	NA	40.00	60.61	NA	NA	55.00	NA	41.51	48.53	60.00	68.18	43.75	53.85	12.50	19.57	18.75	29.41	24.56	37.50	35.29	27.69	21.21	32.14	16.22	25.00	NA	NA	NA	NA	36.84	NA	35.29	30.43	-4.86	0.921129	1.000000
N	alternative_last_exon	MKKS	chr20	-	chr20:10393223-10401175,chr20:10389335-10401175,chr20:10393349-10401175,chr20:10393219-10401175;chr20:10389452-10401175	chr20:10394580-10401175	chr20:10389276-10389451	chr20:10393178-10394579			100.00	86.67	100.00	100.00	100.00	95.83	100.00	NA	100.00	100.00	92.00	NA	100.00	NA	100.00	93.55	100.00	NA	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	96.55	100.00	96.30	100.00	90.00	96.00	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.936008	0.970324
N	cassette	ATXN2L	chr16	+	chr16:28847498-28848048;chr16:28847444-28848071;chr16:28847498-28848071;chr16:28847444-28848048	chr16:28847444-28847646,chr16:28847498-28847646;chr16:28847812-28848048,chr16:28847812-28848071		chr16:28847647-28847811			50.00	45.83	50.00	34.78	28.85	24.00	26.67	31.25	20.37	32.50	25.58	22.22	40.74	30.00	19.70	38.24	32.61	28.57	38.46	40.91	38.24	41.18	42.86	40.00	36.00	42.31	40.00	27.27	29.73	39.29	55.17	56.25	30.30	31.43	40.00	47.22	37.23	41.61	4.38	0.316565	0.709176
K	jcn_only_AD	IDH3B	chr20	-	chr20:2640440-2640713	chr20:2640440-2640675		chr20:2640676-2640713	chr20:2640713-2640714		93.94	77.50	100.00	90.91	92.68	94.59	96.08	100.00	100.00	97.14	100.00	100.00	95.24	100.00	95.83	94.55	92.59	100.00	93.42	93.75	96.43	100.00	96.05	100.00	92.00	100.00	94.59	93.55	97.53	100.00	95.45	94.87	97.56	100.00	91.89	95.12	94.33	97.72	3.39	0.154992	0.657607
N	cassette	PRR14	chr16	+	chr16:30664425-30665550	chr16:30664425-30664685;chr16:30664730-30665550		chr16:30664686-30664729			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	93.94	100.00	100.00	NA	93.55	100.00	100.00	100.00	96.67	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SCAF11	chr12	-	chr12:46313093-46316245;chr12:46316015-46316245	chr12:46315978-46316245		chr12:46313093-46315977;chr12:46315978-46316014	chr12:46313092-46313093;chr12:46315977-46315978		98.08	66.00	93.65	76.19	84.31	53.33	100.00	94.12	93.10	87.18	95.52	94.12	96.43	89.66	92.86	100.00	96.61	88.89	74.29	85.37	60.53	100.00	87.88	89.66	53.12	89.74	92.45	85.71	87.50	69.70	82.61	86.36	71.43	94.55	90.57	85.42	72.86	89.70	16.84	0.142806	0.644068
K	jcn_only_AD	ATRAID	chr2	+	chr2:27435336-27436044	chr2:27435476-27436044		chr2:27435336-27435475	chr2:27435335-27435336		9.09	9.40	12.50	15.79	18.07	NA	16.32	19.61	21.21	15.22	22.04	12.71	18.89	8.89	13.56	16.13	22.56	16.67	13.51	8.11	16.67	12.50	19.61	18.00	0.00	13.33	14.67	22.73	27.69	10.20	8.11	14.08	15.91	23.08	18.60	19.35	14.71	8.99	-5.72	0.740341	0.864412
N	intron_retention		chr17	-	chr17:7530545-7530870				chr17:7530544-7530545;chr17:7530870-7530871		75.00	71.43	69.23	NA	61.54	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	54.55	71.43	55.56	NA	66.67	NA	64.29	85.71	100.00	NA	70.00	NA	72.00	69.57	62.50	NA	71.43	NA	63.40	73.50	10.10	0.254135	1.000000
N	cassette	NMRAL1	chr16	-	chr16:4516404-4524093	chr16:4516404-4519227;chr16:4519467-4524093		chr16:4519228-4519466			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.10	NA	100.00	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	90.00	NA	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	PINK1	chr1	+	chr1:20975725-20976926				chr1:20975724-20975725;chr1:20976926-20976927		5.08	3.05	3.42	0.00	0.00	0.00	1.63	0.00	1.89	6.25	2.41	4.17	7.95	6.25	0.00	13.04	7.32	15.38	0.00	0.00	0.00	10.00	4.69	6.25	0.00	0.00	3.67	0.00	4.00	0.00	4.76	1.39	1.19	22.22	3.33	13.79	1.41	2.38	0.97	0.983186	1.000000
K	jcn_only_AA	SRRT	chr7	+	chr7:100482662-100482836	chr7:100482662-100482833		chr7:100482834-100482836	chr7:100482836-100482837		67.50	62.50	65.31	50.00	62.86	NA	64.86	60.00	52.50	55.56	55.17	66.67	59.26	47.06	50.00	54.00	54.24	50.00	61.11	65.00	62.07	61.11	60.00	62.86	75.00	70.00	61.11	57.58	60.00	57.69	62.00	66.29	75.00	57.14	68.18	72.22	63.68	63.50	-0.18	0.343049	0.663989
N	alternative_acceptor	SARS	chr1	+	chr1:109756751-109757168;chr1:109756751-109766578;chr1:109756751-109766603	chr1:109756751-109766599		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		95.24	94.44	95.83	NA	94.12	NA	95.65	100.00	94.39	92.00	92.59	95.83	96.30	100.00	96.15	92.00	92.86	94.74	NA	95.45	100.00	100.00	86.84	94.44	NA	100.00	90.62	100.00	100.00	100.00	100.00	95.92	90.00	96.67	93.33	100.00	95.05	100.00	4.95	0.046788	0.570243
K	jcn_only_AA	MAP7D1	chr1	+	chr1:36643803-36644019;chr1:36643803-36644071	chr1:36643803-36644046		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		17.31	32.35	16.39	15.79	27.27	NA	25.64	20.37	21.21	20.00	12.77	26.67	21.28	22.03	26.32	13.64	15.00	10.53	14.29	6.67	9.80	8.33	9.72	20.00	0.00	20.69	20.34	25.64	11.54	14.81	11.76	10.45	13.33	13.04	8.62	10.87	17.79	18.84	1.05	0.803670	0.916365
N	jcn_only_AA		chr21	+	chr21:45833958-45837822;chr21:45833958-45837825	chr21:45833958-45837809		chr21:45837810-45837822;chr21:45837823-45837825	chr21:45837822-45837823;chr21:45837825-45837826		95.65	92.11	100.00	NA	100.00	NA	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	90.48	100.00	NA	100.00	94.20	95.83	100.00	100.00	95.12	100.00	100.00	100.00	94.12	82.61	100.00	94.74	95.24	93.51	99.09	100.00	0.91	0.491894	0.749150
K	intron_retention		chr2	+	chr2:112779972-112785927				chr2:112779971-112779972;chr2:112785927-112785928		6.47	12.07	8.64	NA	10.49	NA	2.56	3.64	3.45	NA	1.85	NA	5.81	1.69	0.00	NA	6.09	NA	12.50	6.17	5.00	NA	11.39	NA	0.00	4.35	5.58	NA	6.67	NA	9.52	6.45	14.81	0.00	10.67	9.09	8.94	5.26	-3.68	0.762478	1.000000
K	intron_retention	LRP1	chr12	+	chr12:57577294-57577557				chr12:57577293-57577294;chr12:57577557-57577558		0.00	9.52	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.488471	1.000000
N	jcn_only_AD	PLD2	chr17	+	chr17:4722841-4725087;chr17:4722878-4725087;chr17:4722837-4725087	chr17:4722845-4725087		chr17:4722837-4722840;chr17:4722841-4722844;chr17:4722845-4722877	chr17:4722836-4722837;chr17:4722840-4722841;chr17:4722844-4722845		44.19	32.00	32.69	NA	26.42	NA	31.25	40.00	46.15	18.18	19.23	NA	39.13	25.00	21.74	NA	23.08	NA	22.73	33.33	27.78	NA	24.39	18.18	41.18	50.00	31.11	40.00	26.92	NA	36.00	40.00	42.86	33.33	23.21	21.05	35.56	38.00	2.44	0.510813	0.749841
K	intron_retention	REXO1	chr19	-	chr19:1816345-1816429				chr19:1816344-1816345;chr19:1816429-1816430		4.17	15.79	10.34	0.00	18.75	9.09	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	17.86	8.00	0.00	10.53	7.14	0.00	0.00	3.57	16.67	6.52	14.29	9.52	4.55	6.12	0.00	2.08	2.08	0.989371	1.000000
N	alternative_acceptor	ATXN7L3	chr17	-	chr17:42275099-42275387	chr17:42275120-42275387		chr17:42275099-42275119	chr17:42275098-42275099		7.14	0.00	0.00	NA	NA	NA	0.00	2.27	3.70	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	21.43	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.535251	0.815451
K	intron_retention	TSPAN31	chr12	+	chr12:58140915-58140998				chr12:58140914-58140915;chr12:58140998-58140999		7.84	0.00	6.06	11.76	4.00	10.00	0.00	0.00	0.00	2.08	0.00	0.00	1.69	0.00	0.00	0.00	2.08	2.78	0.00	2.44	6.45	0.00	6.67	3.85	NA	0.00	4.69	6.25	2.86	4.00	8.33	7.50	6.67	5.56	11.76	5.41	0.00	1.22	1.22	0.801525	1.000000
N	alternative_acceptor		chr3	+	chr3:52538893-52539033;chr3:52538893-52538999	chr3:52538893-52539018		chr3:52539000-52539018;chr3:52539019-52539033	chr3:52539018-52539019;chr3:52539033-52539034		97.67	98.32	98.04	NA	100.00	100.00	97.69	97.18	97.44	97.24	97.11	97.95	96.74	98.08	100.00	95.70	96.22	97.40	100.00	97.62	NA	100.00	99.47	98.50	94.83	100.00	97.67	97.14	95.70	98.61	NA	100.00	95.35	100.00	97.26	98.41	97.22	97.67	0.45	0.333459	0.709013
N	cassette	PTGES3	chr12	-	chr12:57058585-57065532;chr12:57058585-57064058;chr12:57058283-57065532	chr12:57058585-57059987,chr12:57058283-57059987;chr12:57060051-57065532,chr12:57060051-57064058		chr12:57059988-57060050			94.74	100.00	98.29	100.00	95.95	100.00	97.52	97.48	97.42	96.83	97.24	95.89	98.31	95.58	98.77	97.32	98.82	98.44	100.00	97.46	98.28	96.97	96.91	96.06	NA	100.00	97.89	99.15	98.65	99.07	96.63	95.73	100.00	96.45	98.37	99.04	100.00	97.04	-2.96	0.041698	0.508130
K	intron_retention	CTD-3149D2.4	chr19	-	chr19:17838789-17844063				chr19:17838788-17838789;chr19:17844063-17844064		87.50	82.35	83.52	91.89	90.77	88.46	85.29	80.00	84.00	86.96	85.48	NA	82.35	85.19	86.67	84.62	87.80	NA	90.91	86.79	91.51	91.67	88.97	NA	94.00	86.49	83.13	90.00	87.80	87.50	89.58	91.84	95.08	82.76	84.09	78.57	88.10	86.64	-1.46	0.886720	1.000000
N	cassette	CD53	chr1	+	chr1:111435156-111437581;chr1:111434094-111441745;chr1:111435156-111441745;chr1:111435156-111440430	chr1:111435156-111436948,chr1:111434094-111436948;chr1:111437024-111437581,chr1:111437024-111441745,chr1:111437024-111440430		chr1:111436949-111437023			97.63	100.00	97.96	92.86	96.75	NA	99.06	99.01	99.38	99.05	98.37	99.09	98.12	99.03	98.85	98.62	99.06	99.56	95.83	97.48	96.13	97.55	98.43	98.47	NA	97.54	98.77	98.49	97.37	97.35	98.34	97.13	97.22	97.68	97.81	98.33	98.12	97.98	-0.14	0.878103	0.960023
K	jcn_only_AD	PPP4C	chr16	+	chr16:30094169-30094714	chr16:30094285-30094714		chr16:30094169-30094284	chr16:30094168-30094169		2.50	0.00	0.00	0.00	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	2.22	0.00	1.18	2.22	0.00	0.00	0.00	1.02	0.00	0.78	0.00	4.63	2.40	5.21	0.95	0.88	2.13	0.00	1.11	1.11	0.566737	0.781063
N	cassette	ZNF688	chr16	-	chr16:30582445-30582754	chr16:30582445-30582545;chr16:30582642-30582754		chr16:30582546-30582641			10.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	8.33	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	6.67	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.709176
K	intron_retention	EXOC3	chr5	+	chr5:462186-462271				chr5:462185-462186;chr5:462271-462272		3.57	5.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.890840	1.000000
K	intron_retention	DEDD	chr1	-	chr1:161092314-161092864				chr1:161092313-161092314;chr1:161092864-161092865		1.75	0.00	3.92	NA	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.56	4.17	0.00	2.17	0.00	NA	1.85	6.52	0.00	0.00	0.00	8.57	3.85	0.00	0.00	2.04	1.89	0.00	1.80	1.80	0.288453	1.000000
N	jcn_only_AD	CASP1,RPS25	chr11	-	chr11:104896328-104897568;chr11:104896328-104896972	chr11:104896328-104896952					98.72	100.00	95.12	97.48	98.95	96.54	100.00	98.94	100.00	100.00	NA	100.00	100.00	97.87	100.00	100.00	NA	100.00	98.97	96.77	100.00	100.00	100.00	95.24	100.00	100.00	96.61	97.94	100.00	98.31	100.00	100.00	98.73	94.12	100.00	98.70	100.00	98.83	-1.17	0.155409	0.657607
K	intron_retention		chr17	-	chr17:74079832-74080086				chr17:74079831-74079832;chr17:74080086-74080087		3.12	6.45	4.17	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	2.17	0.00	0.00	9.68	0.00	4.00	3.03	2.99	0.00	3.70	0.00	4.55	4.92	4.44	2.78	2.13	2.27	3.04	2.60	-0.44	0.364577	1.000000
N	alternative_donor	MRPL40	chr22	+	chr22:19420329-19420787;chr22:19420383-19420787	chr22:19420131-19420787		chr22:19420131-19420328;chr22:19420329-19420382	chr22:19420130-19420131;chr22:19420328-19420329		100.00	100.00	100.00	NA	96.30	100.00	92.50	96.25	94.67	95.00	92.31	100.00	92.50	95.31	96.77	93.33	87.50	100.00	100.00	100.00	95.65	100.00	96.00	100.00	100.00	95.35	100.00	94.12	96.00	100.00	95.65	100.00	100.00	94.12	96.97	95.45	100.00	95.95	-4.05	0.830019	0.949228
N	alternative_donor	STARD10	chr11	-	chr11:72470427-72492106;chr11:72470427-72492019;chr11:72470427-72491133	chr11:72470427-72492157		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		4.35	6.52	6.06	0.00	6.90	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	7.14	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	5.88	5.88	0.00	14.29	0.00	2.94	0.00	-2.94	0.382054	0.657675
N	alternative_acceptor	FCGR2A	chr1	+	chr1:161479865-161480586;chr1:161479865-161480630	chr1:161479865-161480623		chr1:161480587-161480623;chr1:161480624-161480630	chr1:161480623-161480624;chr1:161480630-161480631		99.85	100.00	93.03	100.00	100.00	100.00	100.00	93.59	100.00	92.35	100.00	92.33	100.00	100.00	91.00	100.00	100.00	92.43	NA	99.63	100.00	100.00	100.00	99.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.58	NA	99.12	95.59	99.21	100.00	99.92	-0.08	0.322558	0.709013
K	alternative_first_exon	TUBA1A	chr12	-	chr12:49580617-49582671;chr12:49580617-49582759	chr12:49580617-49582199	chr12:49582760-49583107	chr12:49582200-49582682			3.52	5.88	6.35	NA	NA	NA	3.98	0.60	0.86	7.50	10.53	3.23	1.94	1.63	1.41	12.50	5.26	9.52	9.09	5.69	1.82	NA	21.62	NA	NA	3.00	2.70	14.29	10.34	NA	5.71	7.69	NA	15.00	16.13	17.86	4.93	3.26	-1.67	0.334419	0.536334
K	cassette	MRPL33	chr2	+	chr2:27995560-28002299	chr2:27995560-27997290;chr2:27997398-28002299		chr2:27997291-27997397			37.33	52.58	50.57	55.77	48.31	45.45	43.40	60.38	55.13	55.26	48.05	46.74	50.47	60.78	57.75	52.69	46.94	56.00	46.34	62.79	51.56	48.21	56.58	66.67	61.54	67.44	55.79	47.89	53.39	54.88	51.61	42.99	43.93	60.32	57.32	63.49	48.41	60.58	12.17	0.214072	0.709176
K	jcn_only_AA	ZFAND2A	chr7	-	chr7:1192768-1195088;chr7:1192878-1195088	chr7:1192861-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		91.38	100.00	91.84	90.10	91.76	85.80	92.86	97.56	94.12	93.75	100.00	90.00	100.00	94.74	97.44	91.14	100.00	93.75	85.96	89.74	91.53	86.21	90.70	92.86	82.67	91.80	88.89	90.20	89.74	89.89	92.13	85.19	92.39	88.46	94.74	92.31	92.62	91.97	-0.66	0.858338	0.944239
K	alternative_last_exon	RABGAP1L	chr1	+	chr1:174926687-174938413	chr1:174926687-174927027	chr1:174938414-174938524	chr1:174927028-174927324			98.51	100.00	NA	100.00	100.00	100.00	88.89	91.67	85.29	100.00	93.75	81.54	93.33	95.12	90.67	100.00	93.75	82.86	100.00	95.12	100.00	NA	100.00	88.57	100.00	96.59	NA	100.00	100.00	99.53	97.85	100.00	100.00	100.00	NA	92.00	100.00	95.86	-4.14	0.593718	0.732163
K	intron_retention		chr8	+	chr8:24208824-24209499				chr8:24208823-24208824;chr8:24209499-24209500		1.08	4.21	4.20	0.00	1.16	0.00	0.00	5.56	2.33	4.44	2.86	0.00	2.94	0.00	5.26	0.00	1.85	3.03	2.15	2.04	1.61	1.67	0.00	0.00	0.00	1.96	2.70	3.23	0.00	0.00	2.04	2.19	2.94	1.27	2.25	1.40	2.54	2.00	-0.54	0.981171	1.000000
K	intron_retention	UBA3	chr3	-	chr3:69105435-69105762				chr3:69105434-69105435;chr3:69105762-69105763		8.06	0.00	6.40	NA	0.00	NA	5.13	0.00	0.00	0.00	0.00	0.00	2.27	0.00	1.33	0.00	1.89	0.00	NA	7.14	5.56	6.25	7.94	11.90	NA	6.12	6.52	0.00	4.65	6.67	2.78	2.56	0.00	4.65	7.14	9.68	1.14	4.45	3.32	0.698385	1.000000
K	intron_retention	RBM17	chr10	+	chr10:6154325-6155470				chr10:6154324-6154325;chr10:6155470-6155471		3.17	5.13	7.94	2.21	2.82	1.27	1.89	1.28	1.72	1.42	1.41	0.95	4.48	1.06	3.91	1.32	1.01	1.48	5.00	6.49	2.88	2.59	5.75	7.26	0.00	6.67	6.47	4.80	7.69	2.83	3.03	4.14	1.72	10.28	5.00	6.06	3.19	3.10	-0.09	0.314053	1.000000
K	intron_retention	MED25	chr19	+	chr19:50339565-50339566				chr19:50339564-50339565;chr19:50339566-50339567		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
N	jcn_only_AA	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401503-80402322	chr17:80401382-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		5.03	0.00	4.62	0.00	5.71	38.46	0.00	3.73	1.90	4.35	0.00	0.00	0.00	3.09	3.43	2.78	7.04	0.00	22.92	6.45	11.11	0.00	3.85	5.41	0.00	0.00	3.47	6.82	6.78	5.06	10.59	8.33	12.24	0.00	0.00	2.61	0.00	4.38	4.38	0.811963	0.922515
K	intron_retention	ARHGAP9	chr12	-	chr12:57869182-57869265				chr12:57869181-57869182;chr12:57869265-57869266		2.27	0.00	7.35	NA	3.85	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.08	8.33	2.56	NA	9.09	4.00	2.78	0.00	2.70	0.00	0.00	0.00	0.00	0.529464	1.000000
N	alternative_donor	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365065-62366056;chr20:62365092-62366056	chr20:62365157-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		2.70	12.82	6.06	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.23	0.00	0.00	5.56	4.55	3.45	5.56	4.35	8.00	2.63	9.09	5.71	6.45	9.09	2.63	5.00	7.89	4.76	4.55	4.17	6.00	3.69	3.62	-0.07	0.765981	0.908616
K	intron_retention	TBK1	chr12	+	chr12:64891535-64891747				chr12:64891534-64891535;chr12:64891747-64891748		2.20	0.00	4.24	0.00	0.00	0.00	0.00	2.20	1.05	0.00	0.00	0.00	0.00	2.41	1.15	0.00	0.00	0.00	NA	5.00	4.76	2.63	0.00	3.45	0.00	1.43	2.27	0.00	0.00	0.00	2.33	4.46	8.33	2.78	0.00	3.23	0.00	2.27	2.27	0.606530	1.000000
K	intron_retention	VDAC3	chr8	+	chr8:42259355-42262950				chr8:42259354-42259355;chr8:42262950-42262951		93.18	96.12	85.00	94.44	91.04	96.00	87.67	82.61	75.00	84.44	89.66	90.00	80.49	89.66	88.89	82.67	95.16	88.24	98.44	93.55	95.92	83.72	84.38	82.14	100.00	87.88	86.96	87.18	88.00	92.11	91.67	94.23	94.12	88.10	83.75	89.66	95.12	90.66	-4.46	0.994400	1.000000
N	jcn_only_AA		chr4	+	chr4:1741730-1742208;chr4:1741730-1742563;chr4:1741730-1742558	chr4:1741730-1742552		chr4:1742209-1742552;chr4:1742553-1742558;chr4:1742559-1742563	chr4:1742552-1742553;chr4:1742558-1742559;chr4:1742563-1742564		100.00	95.07	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	98.48	NA	100.00	100.00	96.00	NA	99.53	100.00	96.43	100.00	100.00	100.00	100.00	90.00	100.00	NA	100.00	NA	100.00	97.62	100.00	100.00	100.00	100.00	99.77	100.00	0.23	0.637419	0.838192
K	intron_retention	VPS4A	chr16	+	chr16:69356604-69358110				chr16:69356603-69356604;chr16:69358110-69358111		10.00	12.73	10.34	2.17	4.76	0.00	4.62	0.00	0.00	0.00	2.56	0.00	7.32	0.00	0.00	0.88	0.77	0.00	7.50	3.51	3.64	4.69	7.95	2.00	31.25	0.00	7.35	0.00	3.45	0.00	1.82	9.86	9.68	4.23	3.95	0.00	8.59	0.91	-7.68	0.277720	1.000000
N	coord_cassette	ITGAX	chr16	+	chr16:31374696-31382950	chr16:31374696-31382404;chr16:31382536-31382654;chr16:31382819-31382950		chr16:31382405-31382535;chr16:31382655-31382818			100.00	100.00	93.62	100.00	94.12	NA	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	100.00	97.48	100.00	100.00	100.00	95.35	100.00	87.50	80.52	88.75	100.00	100.00	100.00	93.64	90.91	100.00	100.00	89.74	100.00	90.48	88.16	90.96	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AD	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2800739-2802525;chr18:2800735-2802525	chr18:2799382-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		1.52	0.00	0.00	NA	0.00	20.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.13	NA	0.00	0.00	0.00	NA	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.18	0.00	0.00	0.76	0.76	0.116022	0.646283
N	alternative_donor	SDHB	chr1	-	chr1:17354361-17355094;chr1:17354361-17355119	chr1:17354361-17355148		chr1:17355095-17355119;chr1:17355120-17355148	chr1:17355119-17355120;chr1:17355148-17355149		1.82	0.00	1.89	0.00	3.23	0.00	0.00	2.44	7.84	3.66	0.93	3.08	4.95	3.42	3.33	2.44	1.96	0.00	0.00	5.97	1.85	3.85	4.26	6.00	0.00	4.32	0.00	0.00	0.00	7.32	0.00	0.00	8.16	6.85	5.41	0.00	0.00	2.93	2.93	0.640979	0.838031
K	alternative_acceptor	ARL6IP4,CRADD	chr12	+	chr12:123465814-123466141	chr12:123465814-123466117		chr12:123466118-123466141	chr12:123466141-123466142		29.17	25.00	41.18	24.39	29.03	23.40	18.07	22.22	29.27	10.91	9.47	4.76	14.44	27.78	27.03	16.39	11.63	11.11	27.03	27.78	19.12	28.00	26.87	29.63	18.87	25.00	32.26	18.18	15.69	14.29	40.00	36.36	18.57	20.00	17.39	20.51	18.72	27.78	9.06	0.025632	0.546324
K	alternative_donor	PREB	chr2	-	chr2:27354377-27354541	chr2:27354377-27354539		chr2:27354540-27354541	chr2:27354541-27354542		100.00	100.00	100.00	100.00	92.59	NA	97.22	83.33	100.00	94.12	100.00	NA	100.00	100.00	95.24	100.00	90.91	NA	86.67	85.71	100.00	91.67	93.33	83.33	NA	91.30	91.67	92.86	100.00	86.36	NA	88.00	93.33	94.74	81.82	95.00	97.22	91.30	-5.92	0.456925	0.715132
K	intron_retention		chr18	-	chr18:21113482-21114409				chr18:21113481-21113482;chr18:21114409-21114410		0.89	0.00	2.86	0.00	0.00	NA	1.96	3.51	0.00	3.41	2.47	0.00	2.44	1.85	0.00	2.29	0.00	0.00	NA	1.89	3.12	1.82	0.90	0.89	NA	5.88	1.69	2.75	0.00	0.00	6.25	1.64	0.00	4.10	2.78	2.22	0.98	2.70	1.72	0.341144	1.000000
K	intron_retention	CD163L1	chr12	-	chr12:7507727-7509975				chr12:7507726-7507727;chr12:7509975-7509976		2.72	0.82	4.11	1.45	2.26	2.93	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	1.14	2.06	2.56	5.13	1.51	3.66	1.93	6.67	2.97	2.86	3.30	4.88	0.00	2.17	1.01	1.89	2.03	1.18	0.92	2.39	1.48	0.455665	1.000000
K	alternative_acceptor	YIPF4	chr2	+	chr2:32526565-32532172	chr2:32526565-32530557		chr2:32530558-32532172	chr2:32532172-32532173		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	93.33	100.00	100.00	100.00	90.91	93.94	100.00	100.00	90.91	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	CERS2	chr1	-	chr1:150937040-150938637				chr1:150937039-150937040;chr1:150938637-150938638		98.57	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.08	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	0.00	0.781676	1.000000
N	cassette	ILF3	chr19	+	chr19:10794647-10799854;chr19:10794647-10799225	chr19:10794647-10798021;chr19:10798385-10799225,chr19:10798385-10799854		chr19:10798022-10798384			84.62	100.00	73.53	90.00	93.75	NA	97.30	90.00	94.44	96.30	96.00	92.00	94.12	92.86	95.00	94.64	91.80	95.83	69.23	62.50	81.25	85.19	97.14	95.45	NA	NA	96.15	92.31	93.10	94.12	64.29	86.36	70.00	97.14	91.43	74.29	94.12	84.62	-9.50	0.460342	0.758088
K	intron_retention	TRMT5	chr14	-	chr14:61441913-61442192				chr14:61441912-61441913;chr14:61442192-61442193		11.11	0.00	9.52	4.94	9.43	6.12	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.82	12.50	3.12	13.24	5.08	14.29	0.00	0.00	7.14	0.00	0.00	5.00	24.32	13.33	10.42	11.32	11.11	4.76	0.00	5.55	5.55	0.689808	1.000000
N	jcn_only_AD	TOMM20	chr1	-	chr1:235285688-235287746;chr1:235285688-235292027;chr1:235285688-235291909;chr1:235285688-235290234	chr1:235285688-235290943		chr1:235287747-235290234;chr1:235290235-235290943;chr1:235290944-235291909;chr1:235291910-235292027	chr1:235290234-235290235;chr1:235290943-235290944;chr1:235291909-235291910;chr1:235292027-235292028		0.00	6.48	0.00	0.00	0.00	1.28	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.97	0.00	0.00	3.08	0.00	0.00	0.00	0.00	1.03	0.00	3.92	2.41	3.00	0.00	2.17	0.85	1.19	0.00	-1.19	0.411465	0.674269
N	alternative_last_exon		chr3	+	chr3:50679764-50708801	chr3:50679764-50681839	chr3:50708802-50709161	chr3:50681840-50681963			97.44	93.33	98.04	NA	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	97.30	91.67	100.00	100.00	93.33	NA	100.00	96.97	100.00	96.43	NA	NA	96.77	86.67	97.73	97.56	100.00	93.33	100.00	6.67	0.138071	0.344715
K	cassette	PISD	chr22	-	chr22:32015823-32016981	chr22:32015823-32016538;chr22:32016700-32016981		chr22:32016539-32016699			100.00	100.00	100.00	100.00	94.44	NA	100.00	100.00	100.00	95.74	96.08	100.00	98.04	100.00	92.59	100.00	96.30	NA	100.00	100.00	100.00	96.15	91.67	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	93.75	91.67	92.00	100.00	94.74	100.00	100.00	0.00	0.271122	0.709176
K	alternative_acceptor	MRPL52	chr14	+	chr14:23299158-23299261	chr14:23299158-23299258		chr14:23299259-23299261	chr14:23299261-23299262		71.43	73.68	75.00	100.00	75.00	90.91	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	73.08	71.43	80.95	NA	93.33	NA	58.33	100.00	100.00	NA	63.64	NA	100.00	60.00	71.43	NA	100.00	NA	72.25	85.72	13.46	0.137424	0.635210
K	intron_retention		chr16	+	chr16:2226386-2226560				chr16:2226385-2226386;chr16:2226560-2226561		4.76	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.25	2.22	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	3.70	9.76	0.00	0.00	0.00	0.00	0.00	1.85	1.85	0.488691	1.000000
K	alternative_acceptor	USF1	chr1	-	chr1:161010114-161010365	chr1:161010121-161010365		chr1:161010114-161010120	chr1:161010113-161010114		100.00	100.00	95.52	NA	100.00	100.00	100.00	100.00	97.67	NA	100.00	100.00	100.00	100.00	89.74	100.00	100.00	NA	100.00	92.73	95.24	NA	100.00	100.00	100.00	94.00	94.44	89.29	100.00	100.00	94.83	91.74	100.00	93.10	100.00	100.00	100.00	97.41	-2.59	0.079775	0.585944
K	jcn_only_AA	OAS1	chr12	+	chr12:113355506-113357291	chr12:113355506-113357193		chr12:113357194-113357291	chr12:113357291-113357292		96.07	100.00	100.00	90.91	100.00	90.99	NA	0.00	0.00	NA	NA	0.00	96.61	97.55	97.42	96.77	84.62	92.11	100.00	97.11	NA	100.00	100.00	94.93	100.00	96.02	92.00	95.97	100.00	95.11	3.57	0.00	NA	NA	NA	0.00	100.00	96.04	-3.96	0.149235	0.663989
N	jcn_only_AA	ZNF385A	chr12	-	chr12:54764127-54764409	chr12:54764271-54764409		chr12:54764127-54764270	chr12:54764126-54764127		100.00	100.00	100.00	NA	100.00	NA	100.00	97.56	100.00	95.00	98.85	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	99.02	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.19	-0.81	0.098940	0.663989
N	alternative_donor	TMEM176A	chr7	+	chr7:150501808-150501914;chr7:150501561-150501914	chr7:150501574-150501914		chr7:150501561-150501573;chr7:150501574-150501807	chr7:150501560-150501561;chr7:150501573-150501574		6.96	12.50	5.99	0.00	4.17	4.35	4.70	3.86	5.29	9.52	3.77	5.17	3.76	4.25	6.21	5.36	4.39	5.08	4.34	5.74	4.55	5.88	4.69	4.17	3.90	5.05	4.34	3.49	3.33	4.19	4.59	4.43	3.77	4.05	5.00	3.21	4.12	4.82	0.70	0.786403	0.923123
N	jcn_only_AD	AD000671.6	chr19	-	chr19:36232130-36233296;chr19:36232130-36233167	chr19:36232130-36233290		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		0.00	9.38	0.00	8.70	4.35	16.22	6.90	0.00	0.00	0.00	11.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.76	0.00	0.00	0.00	0.00	0.00	10.87	13.33	7.27	0.00	0.00	0.00	0.00	5.36	8.62	6.67	0.00	0.00	8.19	0.00	-8.19	0.096553	0.639657
K	cassette	NDUFB5	chr3	+	chr3:179322728-179333770	chr3:179322728-179332739;chr3:179332848-179333770		chr3:179332740-179332847			100.00	100.00	93.55	NA	100.00	NA	96.43	100.00	92.00	92.00	95.12	100.00	94.23	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	93.75	100.00	100.00	NA	100.00	100.00	100.00	96.00	100.00	100.00	91.18	100.00	100.00	100.00	96.30	100.00	100.00	0.00	0.193237	0.709176
N	jcn_only_AD	CREB1	chr2	+	chr2:208442380-208461637;chr2:208435046-208461637	chr2:208442360-208461637					0.00	NA	0.00	NA	0.00	0.00	0.00	2.38	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	SLCO2B1	chr11	+	chr11:74880452-74883423;chr11:74876995-74883423	chr11:74880452-74880710,chr11:74876995-74880710;chr11:74880810-74883423		chr11:74880711-74880809			92.45	100.00	94.29	NA	NA	NA	97.78	97.33	90.48	98.15	95.41	95.12	95.98	94.29	NA	97.06	96.91	96.77	NA	97.62	NA	93.33	93.22	100.00	100.00	100.00	94.59	100.00	94.55	NA	NA	100.00	NA	100.00	97.92	100.00	98.89	97.33	-1.56	0.243671	0.709176
N	cassette	ZNF267	chr16	+	chr16:31885291-31895818;chr16:31885291-31889606	chr16:31885291-31886523;chr16:31886624-31889606,chr16:31886624-31895818		chr16:31886524-31886623			0.00	0.00	3.03	0.00	0.00	1.00	2.17	3.41	5.17	2.44	0.00	2.27	0.00	4.69	5.00	3.25	0.00	2.48	0.00	2.04	2.38	1.43	1.52	2.12	0.00	0.00	0.00	2.44	3.57	0.98	1.64	2.56	0.00	2.25	0.00	1.99	0.00	1.84	1.84	0.098010	0.674800
K	intron_retention	MRPS22	chr3	+	chr3:139074633-139075760				chr3:139074632-139074633;chr3:139075760-139075761		8.00	0.00	13.16	3.12	1.43	0.00	6.67	0.00	0.00	2.50	5.56	3.12	0.00	0.00	0.00	0.00	2.17	0.00	1.27	3.23	0.00	0.00	6.00	10.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	2.86	2.30	5.26	8.82	6.06	0.64	0.00	-0.64	0.995963	1.000000
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145013517;chr8:145012861-145016559;chr8:145012861-145047570;chr8:145012861-145027893;chr8:145012861-145017946	chr8:145012861-145024351	chr8:145049345-145049543;chr8:145013518-145013758;chr8:145016560-145016692;chr8:145047571-145047697;chr8:145027894-145028088;chr8:145017947-145018126	chr8:145024352-145025044			21.43	37.04	26.92	NA	NA	NA	34.48	16.13	17.65	19.57	28.85	21.05	33.33	16.28	16.67	28.12	32.94	12.00	23.08	16.67	NA	NA	27.59	7.69	20.41	15.38	21.43	NA	33.33	NA	NA	NA	21.43	25.00	37.14	21.43	28.20	16.28	-11.92	0.012876	0.066113
N	cassette	FAM91A1	chr8	+	chr8:124818470-124821132	chr8:124818470-124820511;chr8:124820617-124821132		chr8:124820512-124820616			100.00	NA	88.89	NA	NA	NA	100.00	90.91	100.00	93.48	100.00	89.36	96.92	97.44	100.00	100.00	100.00	100.00	NA	90.91	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	96.67	100.00	98.72	-1.28	0.219975	0.709176
K	intron_retention	ATXN2L	chr16	+	chr16:28847498-28847646				chr16:28847497-28847498;chr16:28847646-28847647		100.00	100.00	100.00	100.00	100.00	NA	100.00	86.67	95.83	83.33	100.00	NA	96.43	87.50	93.33	94.44	81.82	NA	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.749176	1.000000
K	intron_retention	GGA1	chr22	+	chr22:38019475-38019558				chr22:38019474-38019475;chr22:38019558-38019559		0.00	0.00	2.82	NA	3.57	NA	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	1.37	0.00	0.00	2.70	0.00	0.00	0.00	3.03	0.00	1.25	0.00	0.00	2.78	0.00	1.75	2.38	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	TGFBI	chr5	+	chr5:135385270-135388664;chr5:135385270-135386473;chr5:135385270-135388706;chr5:135385270-135386076	chr5:135385270-135388595		chr5:135386077-135386473;chr5:135386474-135388595;chr5:135388596-135388664;chr5:135388665-135388706	chr5:135386473-135386474;chr5:135388595-135388596;chr5:135388664-135388665;chr5:135388706-135388707		99.63	98.74	98.63	96.15	96.76	94.74	99.51	99.88	99.83	99.35	99.28	99.74	99.50	100.00	99.62	99.79	98.97	99.36	97.24	99.44	98.92	99.66	98.22	100.00	98.05	99.44	99.07	99.43	98.41	100.00	99.44	99.44	97.41	98.09	98.02	99.80	98.39	99.53	1.14	0.028692	0.546324
K	intron_retention		chr16	-	chr16:240135-240539				chr16:240134-240135;chr16:240539-240540		2.70	0.00	3.08	2.08	1.01	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	2.47	3.23	1.39	3.03	4.71	0.00	0.00	0.00	1.72	1.56	2.82	1.12	8.11	5.08	3.33	1.85	1.92	3.45	0.00	1.35	1.35	0.894419	1.000000
K	alternative_donor	RAC2	chr22	-	chr22:37637699-37640174;chr22:37637699-37640153	chr22:37637699-37640329		chr22:37640154-37640174;chr22:37640175-37640329	chr22:37640174-37640175;chr22:37640329-37640330		0.88	0.00	3.16	NA	0.00	NA	0.00	0.00	0.00	3.57	0.00	1.61	0.00	0.00	0.00	0.00	0.00	6.90	NA	3.12	0.00	2.27	0.00	11.76	NA	4.17	0.00	0.00	0.00	NA	0.00	4.00	0.00	0.00	3.28	3.51	0.00	0.44	0.44	0.128232	0.540946
K	alternative_donor	C7orf49	chr7	-	chr7:134853813-134855403;chr7:134853813-134855150	chr7:134853813-134855027		chr7:134855028-134855150;chr7:134855151-134855403	chr7:134855150-134855151;chr7:134855403-134855404		14.29	10.00	4.00	NA	0.00	NA	0.00	14.29	4.00	0.00	9.76	NA	8.33	13.33	0.00	5.00	4.08	NA	NA	7.14	NA	NA	6.67	NA	6.67	NA	0.00	NA	0.00	NA	NA	15.38	NA	NA	7.14	18.18	7.50	13.81	6.31	0.076914	0.468051
N	alternative_donor	C11orf73	chr11	+	chr11:86055563-86055644;chr11:86048573-86055644	chr11:86048535-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	10.53	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	RPL15	chr3	+	chr3:23958936-23959340;chr3:23958787-23959340;chr3:23958731-23959340	chr3:23958665-23959340		chr3:23958665-23958730;chr3:23958731-23958786;chr3:23958787-23958935	chr3:23958664-23958665;chr3:23958730-23958731;chr3:23958786-23958787		87.64	96.05	89.26	95.95	94.89	100.00	90.86	88.51	87.57	94.81	95.27	94.68	92.54	87.50	88.94	92.41	95.61	94.00	93.18	88.89	92.86	93.33	95.12	93.75	100.00	86.44	90.20	94.41	94.62	94.03	87.00	92.14	97.62	90.78	88.89	92.55	94.62	87.57	-7.05	0.002668	0.124802
K	intron_retention	SPHK1	chr17	+	chr17:74382219-74382301				chr17:74382218-74382219;chr17:74382301-74382302		4.20	0.00	2.89	1.33	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.00	0.00	NA	2.94	1.79	1.73	0.76	1.78	NA	2.72	0.00	0.00	0.00	0.31	12.38	5.93	0.00	1.94	0.00	1.93	0.00	2.83	2.83	0.215594	1.000000
N	alternative_donor	SIRT6,TYK2	chr19	-	chr19:10467395-10468439	chr19:10467395-10468309		chr19:10468310-10468439	chr19:10468439-10468440		2.00	0.00	6.76	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	3.12	0.00	0.00	0.00	NA	5.56	4.35	NA	0.00	7.69	NA	0.00	5.80	0.00	0.00	0.00	4.35	5.77	7.14	3.70	4.65	7.41	0.00	3.17	3.17	0.580138	0.799662
N	jcn_only_AA	MS4A7	chr11	+	chr11:60160260-60164034;chr11:60160260-60161259;chr11:60160260-60161301;chr11:60160260-60162423	chr11:60160260-60162418		chr11:60161260-60161301;chr11:60161302-60162418;chr11:60162419-60162423;chr11:60162424-60164034	chr11:60161301-60161302;chr11:60162418-60162419;chr11:60162423-60162424;chr11:60164034-60164035		2.12	0.00	2.04	3.77	1.11	0.00	0.62	2.04	3.28	4.49	0.00	1.64	1.38	1.67	0.00	5.97	0.00	0.00	3.74	4.18	0.00	5.26	2.29	5.00	0.00	2.24	0.00	0.00	2.73	3.64	1.20	0.92	1.81	2.74	0.81	3.15	1.00	2.08	1.08	0.201167	0.663989
K	cassette	RNF7	chr3	+	chr3:141457359-141464000	chr3:141457359-141462350;chr3:141462399-141464000		chr3:141462351-141462398			100.00	100.00	100.00	100.00	100.00	100.00	97.40	100.00	97.27	100.00	95.00	100.00	97.85	100.00	98.26	95.79	100.00	100.00	95.74	100.00	96.51	97.37	97.62	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	1.08	0.094887	0.658231
N	alternative_acceptor	GPR137B	chr1	+	chr1:236368551-236370432;chr1:236368551-236371349;chr1:236368551-236376613	chr1:236368551-236371360		chr1:236370433-236371349;chr1:236371350-236371360;chr1:236371361-236376613	chr1:236371349-236371350;chr1:236371360-236371361;chr1:236376613-236376614		2.17	0.00	0.00	2.70	0.00	0.00	3.45	0.00	3.33	1.16	2.04	1.67	2.78	0.00	2.13	1.37	1.96	0.00	4.55	3.23	0.00	0.00	0.00	0.00	6.25	0.00	2.08	0.00	0.00	0.00	5.26	3.85	0.00	1.72	0.00	1.49	3.12	1.08	-2.03	0.451180	0.756508
K	intron_retention	EIF4A1	chr17	+	chr17:7481235-7481544				chr17:7481234-7481235;chr17:7481544-7481545		64.71	49.38	65.98	55.32	51.93	31.87	NA	NA	NA	27.59	31.58	NA	37.50	NA	NA	26.00	42.11	NA	21.14	47.69	42.94	59.38	62.88	57.66	30.51	67.35	72.55	45.10	52.29	41.43	60.14	58.82	34.57	56.85	60.98	59.41	34.57	62.42	27.85	0.020418	1.000000
K	intron_retention	STARD3	chr17	+	chr17:37816527-37816683				chr17:37816526-37816527;chr17:37816683-37816684		4.26	4.08	3.12	4.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	4.23	3.51	7.32	3.54	2.50	0.00	2.90	3.85	2.63	1.92	4.76	6.49	5.65	2.99	4.05	2.88	4.00	0.88	3.57	2.69	0.563794	1.000000
N	alternative_donor	TPRA1	chr3	-	chr3:127294894-127295027;chr3:127294894-127295459	chr3:127294894-127295451		chr3:127295028-127295451;chr3:127295452-127295459	chr3:127295451-127295452;chr3:127295459-127295460		0.00	0.00	4.65	0.00	0.00	6.67	1.39	0.00	0.00	0.44	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.536056	0.777227
K	cassette	NDUFB5	chr3	+	chr3:179333838-179336202	chr3:179333838-179334770;chr3:179334833-179336202		chr3:179334771-179334832			100.00	100.00	97.22	94.74	98.08	100.00	100.00	100.00	98.00	97.92	100.00	100.00	98.25	100.00	100.00	98.44	100.00	100.00	94.44	100.00	96.08	100.00	100.00	100.00	100.00	97.22	98.46	96.15	100.00	100.00	100.00	98.51	97.67	100.00	97.14	100.00	99.12	100.00	0.88	0.290670	0.709176
K	intron_retention		chr9	+	chr9:95870110-95872849				chr9:95870109-95870110;chr9:95872849-95872850		5.45	3.57	12.96	0.00	3.53	NA	2.33	0.00	0.00	0.00	1.72	0.00	6.38	2.78	2.70	0.00	2.70	0.00	3.03	7.32	2.63	4.35	8.24	0.00	0.00	7.50	4.29	0.00	2.74	3.70	6.67	9.38	4.26	4.26	3.17	9.09	3.30	6.06	2.76	0.467051	1.000000
N	alternative_donor	MTCH1	chr6	-	chr6:36936751-36937814;chr6:36936751-36937076;chr6:36936751-36937070	chr6:36936751-36937462		chr6:36937071-36937076;chr6:36937077-36937462;chr6:36937463-36937814	chr6:36937076-36937077;chr6:36937462-36937463;chr6:36937814-36937815		3.09	1.69	3.90	2.38	1.09	0.00	0.64	0.34	0.70	1.44	0.52	0.66	0.95	1.06	2.16	1.14	0.97	0.62	1.33	3.30	0.65	2.78	6.50	4.30	0.00	1.00	2.09	1.47	3.26	1.20	1.44	2.03	0.98	2.71	2.67	2.62	0.96	1.25	0.29	0.199697	0.570816
K	alternative_first_exon	ABR,USP36	chr17	-	chr17:976918-982044;chr17:976918-982569	chr17:976918-982053	chr17:982570-982630	chr17:982054-982386			0.00	0.00	1.35	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.17	NA	0.00	0.00	1.23	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.64	0.00	0.75	0.00	0.00	0.00	0.429100	0.573996
K	intron_retention	AP3D1	chr19	-	chr19:2111828-2112858				chr19:2111827-2111828;chr19:2112858-2112859		4.35	0.00	2.22	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.85	0.00	3.33	1.75	5.41	20.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	2.00	2.13	4.23	0.00	0.00	0.00	0.690191	1.000000
K	alternative_last_exon	TM2D3	chr15	-	chr15:102174111-102185289;chr15:102173932-102185289	chr15:102182848-102185289	chr15:102173180-102173931	chr15:102182049-102182847			90.00	91.67	86.59	95.12	91.94	91.84	89.58	90.20	87.88	96.67	87.50	95.00	90.00	92.11	89.47	95.12	91.67	95.24	87.50	90.00	90.14	100.00	91.18	95.83	82.09	86.21	86.08	94.12	92.59	95.08	85.19	83.54	83.12	96.00	92.86	94.74	88.54	90.00	1.46	0.421826	0.576909
K	alternative_acceptor	PNISR	chr6	-	chr6:99848188-99850415	chr6:99849507-99850415		chr6:99848188-99849506	chr6:99848187-99848188		100.00	100.00	99.07	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	95.83	85.71	100.00	100.00	95.65	100.00	100.00	96.47	96.97	100.00	89.74	90.91	93.42	78.26	96.61	100.00	100.00	100.00	100.00	0.00	0.730468	0.900154
K	alternative_donor	USF1	chr1	-	chr1:161011202-161011524;chr1:161011202-161011623	chr1:161011202-161011440		chr1:161011441-161011524;chr1:161011525-161011623	chr1:161011524-161011525;chr1:161011623-161011624		91.89	100.00	97.67	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	90.91	100.00	95.45	NA	96.43	NA	NA	97.56	100.00	95.24	96.30	100.00	100.00	100.00	92.31	100.00	95.24	100.00	100.00	100.00	0.00	0.536439	0.777227
K	intron_retention	ECM1	chr1	+	chr1:150483675-150483932				chr1:150483674-150483675;chr1:150483932-150483933		4.85	1.72	6.45	3.03	3.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00	0.00	0.00	0.37	0.00	5.56	8.57	2.17	0.00	4.40	0.00	12.73	3.02	8.08	0.00	3.40	0.00	2.41	4.23	2.13	2.78	6.02	0.78	1.92	2.71	0.79	0.464492	1.000000
K	alternative_first_exon	LINC01578,RP11-437B10.1	chr15	+	chr15:93428385-93428744,chr15:93428348-93428744;chr15:93427009-93428744;chr15:93426417-93428744	chr15:93426774-93428744	chr15:93426815-93427008;chr15:93425937-93426416	chr15:93426643-93426773			9.09	0.00	7.41	8.33	11.11	NA	5.00	0.00	2.27	6.90	8.00	4.17	5.56	5.26	2.04	3.45	5.00	5.56	7.14	8.82	11.76	14.81	14.63	13.64	0.00	8.57	3.92	0.00	6.25	5.88	11.43	10.29	5.56	13.89	8.57	12.00	5.28	8.70	3.42	0.143011	0.334948
N	alternative_acceptor		chr1	+	chr1:155706855-155707075;chr1:155706855-155707956	chr1:155706855-155707947		chr1:155707076-155707947;chr1:155707948-155707956	chr1:155707947-155707948;chr1:155707956-155707957		88.00	93.94	95.65	97.30	96.61	94.44	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	97.37	97.37	96.30	100.00	96.92	94.29	98.00	95.35	92.73	92.31	96.97	95.45	95.00	96.00	95.65	96.30	97.22	94.00	95.38	94.00	96.08	91.30	96.94	96.34	-0.61	0.528566	0.811130
N	cassette	BDH2,SLC9B2	chr4	-	chr4:104004087-104007636	chr4:104004087-104006505;chr4:104006620-104007636		chr4:104006506-104006619			100.00	100.00	98.48	NA	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	95.65	100.00	100.00	NA	100.00	NA	100.00	100.00	98.18	100.00	92.59	100.00	100.00	100.00	100.00	NA	96.15	95.24	95.74	98.00	100.00	90.48	100.00	100.00	100.00	100.00	0.00	0.988497	0.997001
N	alternative_acceptor		chr3	+	chr3:52512299-52512388;chr3:52512299-52512390	chr3:52512299-52512464		chr3:52512389-52512390;chr3:52512391-52512464	chr3:52512390-52512391;chr3:52512464-52512465		100.00	100.00	97.56	NA	NA	NA	97.78	100.00	100.00	NA	96.88	NA	97.62	93.75	100.00	100.00	100.00	NA	NA	94.74	NA	NA	96.67	NA	83.33	100.00	93.33	NA	90.48	NA	NA	100.00	NA	100.00	95.00	100.00	97.70	100.00	2.30	0.502357	0.793046
N	cassette	HK3	chr5	-	chr5:176317943-176318388	chr5:176317943-176318037;chr5:176318281-176318388		chr5:176318038-176318280			100.00	76.92	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	91.67	100.00	90.00	100.00	NA	90.00	NA	100.00	100.00	NA	89.47	89.19	88.57	100.00	100.00	0.00	0.536910	0.809056
K	intron_retention	MIA3	chr1	+	chr1:222835467-222835594				chr1:222835466-222835467;chr1:222835594-222835595		1.11	0.00	2.82	NA	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	4.55	0.00	0.00	0.00	1.59	0.00	6.67	3.03	3.33	0.00	3.97	8.06	0.00	13.33	2.13	2.86	1.33	0.00	12.82	5.88	2.88	0.00	1.35	1.35	0.672535	1.000000
K	intron_retention		chr1	-	chr1:38463232-38463355				chr1:38463231-38463232;chr1:38463355-38463356		0.00	0.00	19.23	NA	8.00	NA	0.00	0.00	0.00	7.69	8.00	0.00	0.00	0.00	6.25	0.00	2.82	0.00	0.00	0.00	7.69	NA	6.06	0.00	NA	15.00	6.90	6.25	4.76	6.25	NA	6.25	9.09	NA	7.14	0.00	0.00	0.00	0.00	0.860869	1.000000
K	jcn_only_AD	PLXNB2	chr22	-	chr22:50729027-50733154	chr22:50729027-50733147		chr22:50733148-50733154	chr22:50733154-50733155		68.75	60.42	66.28	NA	NA	NA	67.12	72.41	73.91	77.78	67.31	76.92	71.13	67.50	68.75	75.00	71.15	NA	76.92	74.36	NA	76.92	64.86	NA	57.14	54.55	62.86	NA	62.50	NA	72.73	76.09	75.00	66.67	80.00	78.57	69.12	70.58	1.45	0.924181	0.959550
K	intron_retention	ADAM8	chr10	-	chr10:135076738-135077191				chr10:135076737-135076738;chr10:135077191-135077192		3.33	0.00	0.96	0.00	3.66	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	1.72	1.75	0.00	7.81	0.00	0.00	1.64	6.02	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	1.60	1.60	0.730417	1.000000
N	cassette	IST1	chr16	+	chr16:71956584-71961516;chr16:71957284-71961516	chr16:71957284-71958671,chr16:71956584-71958671;chr16:71958721-71961516		chr16:71958672-71958720			100.00	100.00	96.90	100.00	100.00	NA	98.86	99.00	100.00	98.32	100.00	98.12	96.70	96.70	100.00	100.00	97.03	100.00	NA	93.94	100.00	100.00	100.00	97.94	NA	97.50	98.04	100.00	100.00	100.00	100.00	98.11	92.31	97.12	98.91	98.17	97.78	98.25	0.47	0.667321	0.878382
K	intron_retention	ARAF	chrX	+	chrX:47426832-47428116				chrX:47426831-47426832;chrX:47428116-47428117		2.86	0.00	5.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.44	10.53	0.00	5.97	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	SKIV2L	chr6	+	chr6:31936316-31936412;chr6:31936316-31936399	chr6:31936316-31936462		chr6:31936400-31936412;chr6:31936413-31936462	chr6:31936412-31936413;chr6:31936462-31936463		90.62	79.03	80.00	80.00	79.31	61.54	100.00	92.86	91.67	NA	NA	NA	100.00	NA	90.00	100.00	100.00	NA	79.17	87.50	87.50	90.00	88.24	NA	88.89	81.48	84.85	NA	85.71	80.00	81.82	80.85	81.40	86.67	76.47	85.19	85.15	87.50	2.35	0.798903	0.925595
K	cassette	ATP5B	chr12	-	chr12:57038740-57039620	chr12:57038740-57038954;chr12:57039138-57039620		chr12:57038955-57039137			87.02	92.68	84.05	91.30	86.52	NA	98.66	98.01	98.03	96.14	96.85	97.44	98.23	97.02	96.61	96.81	95.87	95.57	90.48	87.22	91.95	91.67	90.61	95.74	100.00	87.97	93.45	93.85	95.24	95.92	84.21	84.44	100.00	90.00	88.86	92.43	98.44	87.59	-10.85	0.052958	0.583384
N	jcn_only_AD	ADAP2	chr17	+	chr17:29249827-29249957;chr17:29249127-29249957	chr17:29249857-29249957		chr17:29249127-29249826;chr17:29249827-29249856	chr17:29249126-29249127;chr17:29249826-29249827		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.28	1.56	0.00	2.13	1.52	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.888672	0.943380
K	alternative_donor	CD4	chr12	+	chr12:6923467-6923924	chr12:6923630-6923924		chr12:6923467-6923629	chr12:6923466-6923467		0.00	2.40	5.26	0.00	0.00	NA	1.26	1.38	0.72	1.02	1.78	0.72	1.48	3.03	1.35	0.37	2.02	0.43	7.14	1.23	0.00	0.00	1.19	0.24	12.50	2.63	5.32	0.00	1.27	0.00	1.39	1.79	3.70	0.90	1.63	0.56	3.05	1.38	-1.67	0.141861	0.557390
N	alternative_donor	GAA	chr17	+	chr17:78075725-78078353;chr17:78075679-78078353	chr17:78075690-78078353		chr17:78075679-78075689;chr17:78075690-78075724	chr17:78075678-78075679;chr17:78075689-78075690		93.75	93.33	100.00	NA	NA	NA	95.56	95.24	95.00	94.29	94.44	96.43	93.33	100.00	100.00	95.65	97.30	95.24	NA	94.12	NA	92.86	97.14	96.00	100.00	95.45	94.74	100.00	94.44	100.00	NA	100.00	NA	100.00	95.24	96.55	94.44	95.24	0.80	0.937939	0.984606
K	intron_retention	ATP13A1	chr19	-	chr19:19757157-19757937				chr19:19757156-19757157;chr19:19757937-19757938		3.39	0.00	0.00	7.14	7.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	1.67	4.35	2.04	6.06	0.00	3.08	5.41	4.65	4.17	2.17	0.00	1.67	0.00	0.00	5.88	4.44	0.00	0.00	0.00	0.483845	1.000000
K	jcn_only_AA	CARS	chr11	-	chr11:3023284-3023770	chr11:3023405-3023770		chr11:3023284-3023404	chr11:3023283-3023284		0.00	0.00	3.08	12.12	6.56	6.98	0.00	2.86	0.00	0.00	0.00	0.00	0.00	3.85	3.23	6.67	5.41	NA	2.20	5.56	2.86	0.00	0.00	0.00	4.62	9.43	6.85	4.76	2.78	3.23	2.50	4.00	7.14	0.00	6.25	6.25	1.10	3.35	2.25	0.363059	0.663989
N	alternative_donor		chr19	-	chr19:55604602-55605722	chr19:55604602-55605712		chr19:55605713-55605722	chr19:55605722-55605723		100.00	100.00	97.83	100.00	100.00	NA	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.48	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	100.00	100.00	100.00	92.06	100.00	100.00	89.47	100.00	100.00	100.00	0.00	0.206349	0.577393
N	jcn_only_AD	ZBTB48	chr1	+	chr1:6648257-6648337	chr1:6648262-6648337		chr1:6648257-6648261	chr1:6648256-6648257		0.00	0.00	0.00	0.00	1.54	0.00	0.00	NA	NA	NA	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	4.35	0.00	6.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	NDUFC1	chr4	-	chr4:140216295-140216885	chr4:140216301-140216885		chr4:140216295-140216300	chr4:140216294-140216295		100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	98.53	100.00	100.00	97.44	100.00	100.00	100.00	93.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.92	95.83	100.00	98.59	100.00	100.00	0.00	0.180345	0.660713
K	cassette	NFE2L1	chr17	+	chr17:46133961-46134705	chr17:46133961-46134393;chr17:46134484-46134705		chr17:46134394-46134483			24.39	30.00	34.45	NA	NA	NA	41.58	52.48	58.16	28.30	27.27	29.03	36.59	40.94	57.59	29.46	24.00	27.78	NA	39.33	35.71	28.00	18.75	33.33	17.65	43.86	33.33	29.63	18.75	44.44	44.90	46.05	NA	22.58	29.63	32.22	33.30	42.40	9.10	0.188070	0.709176
N	cassette	MTCH2	chr11	-	chr11:47640472-47648631;chr11:47644329-47648631	chr11:47644329-47647225,chr11:47640472-47647225;chr11:47647294-47648631		chr11:47647226-47647293			100.00	92.52	91.46	100.00	96.95	96.39	94.07	100.00	95.35	97.80	95.35	93.94	95.61	100.00	95.31	95.69	96.36	95.08	94.20	100.00	93.13	97.44	96.05	92.00	91.26	90.91	91.04	98.59	94.74	100.00	92.16	93.22	92.52	96.62	95.92	95.83	93.29	100.00	6.71	0.089757	0.653946
K	intron_retention	QARS	chr3	-	chr3:49135914-49136032				chr3:49135913-49135914;chr3:49136032-49136033		4.55	4.78	5.48	0.00	3.15	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.16	4.08	2.94	0.00	3.17	0.00	2.09	4.44	6.76	0.00	2.25	0.00	5.77	9.59	4.47	2.44	1.28	3.23	2.62	4.26	1.63	0.834250	1.000000
N	cassette	TRADD	chr16	-	chr16:67189558-67193740	chr16:67189558-67190412;chr16:67190572-67193740		chr16:67190413-67190571			87.88	100.00	79.17	NA	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	93.94	100.00	100.00	100.00	100.00	NA	96.00	96.43	100.00	100.00	100.00	100.00	96.00	100.00	NA	NA	100.00	100.00	98.00	-2.00	0.120895	0.709176
N	cassette	GRSF1	chr4	-	chr4:71686579-71691012	chr4:71686579-71690010;chr4:71690086-71691012		chr4:71690011-71690085			100.00	100.00	93.85	100.00	96.20	96.00	100.00	100.00	96.33	100.00	100.00	100.00	97.26	97.10	97.01	96.83	100.00	100.00	98.11	95.83	100.00	100.00	97.37	100.00	89.89	100.00	98.51	100.00	100.00	100.00	94.64	97.65	100.00	100.00	95.45	98.61	99.06	98.55	-0.51	0.842558	0.947104
K	intron_retention		chr2	+	chr2:163215668-163216003				chr2:163215667-163215668;chr2:163216003-163216004		5.47	0.00	5.42	0.00	0.00	0.00	0.00	1.00	1.15	0.00	0.00	0.00	0.00	0.93	1.41	0.00	0.00	0.00	2.22	4.44	1.59	6.06	2.63	4.17	0.00	0.94	5.45	2.44	0.00	2.17	0.00	5.13	2.22	6.25	3.70	4.46	0.00	0.97	0.97	0.556336	1.000000
K	intron_retention	LINC00963	chr9	+	chr9:132255875-132265601				chr9:132255874-132255875;chr9:132265601-132265602		0.00	4.26	0.00	7.14	4.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	NA	0.00	NA	0.00	0.00	1.28	0.00	NA	0.00	4.35	4.76	4.17	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	SEC11C	chr18	+	chr18:56822614-56822919;chr18:56819918-56822919	chr18:56819845-56822919		chr18:56819845-56819917;chr18:56819918-56822613	chr18:56819844-56819845;chr18:56819917-56819918		8.11	0.00	0.00	0.00	2.86	0.00	0.00	0.00	3.85	1.89	2.50	0.00	1.96	0.00	3.12	1.92	2.73	1.72	5.80	3.12	1.92	4.00	2.56	3.70	0.00	0.00	3.03	4.35	0.00	0.00	8.00	0.00	4.92	5.56	0.00	1.25	0.98	1.56	0.58	0.587552	0.799662
N	jcn_only_AD	ANAPC2	chr9	-	chr9:140070290-140074632;chr9:140070290-140070454;chr9:140070290-140072519	chr9:140070290-140071500		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	ARHGAP4	chrX	-	chrX:153176644-153178477	chrX:153176644-153178153;chrX:153178257-153178477		chrX:153178154-153178256			100.00	100.00	100.00	100.00	100.00	100.00	99.02	100.00	100.00	100.00	100.00	100.00	99.40	100.00	NA	100.00	100.00	100.00	97.73	100.00	100.00	96.43	98.68	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	95.00	100.00	95.24	96.36	95.45	99.70	100.00	0.30	0.139325	0.709176
K	intron_retention	EEF1D	chr8	-	chr8:144663325-144663398				chr8:144663324-144663325;chr8:144663398-144663399		6.84	3.51	3.91	3.06	0.92	2.34	0.00	0.00	0.00	0.70	0.00	0.00	0.00	0.00	0.50	0.74	0.00	0.00	3.46	5.92	3.80	4.35	2.49	4.14	3.12	4.24	3.04	2.40	1.80	1.94	15.82	10.41	4.58	3.90	3.30	3.59	3.29	5.08	1.79	0.527823	1.000000
K	alternative_donor	SNHG5	chr6	-	chr6:86387211-86387512	chr6:86387211-86387508		chr6:86387509-86387512	chr6:86387512-86387513		1.27	0.23	0.97	0.33	0.71	0.24	0.00	0.00	0.71	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.76	5.26	1.63	1.50	0.90	0.82	0.16	0.00	0.85	3.20	0.94	2.46	1.98	1.90	0.42	0.63	0.89	1.07	0.20	0.64	0.44	0.228459	0.597907
K	intron_retention		chr11	+	chr11:47433591-47433896				chr11:47433590-47433591;chr11:47433896-47433897		8.62	0.00	10.53	9.09	10.34	NA	0.00	0.00	0.00	3.33	2.94	0.00	6.52	4.05	4.88	5.88	3.23	NA	0.00	10.91	0.00	9.38	11.36	16.67	14.29	0.00	14.29	12.90	19.23	10.00	3.23	7.14	5.26	11.11	10.29	4.35	2.63	3.64	1.01	0.444263	1.000000
N	cassette	DDA1	chr19	+	chr19:17425199-17430354	chr19:17425199-17426742;chr19:17426805-17430354		chr19:17426743-17426804			100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.67	100.00	98.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	97.87	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.34	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.191062	0.709176
K	jcn_only_AA	RABL6	chr9	+	chr9:139733574-139733765	chr9:139733574-139733673		chr9:139733674-139733765	chr9:139733765-139733766		94.59	91.38	97.83	93.94	95.40	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	94.74	93.10	92.11	100.00	97.22	100.00	96.34	90.62	94.52	100.00	100.00	100.00	92.31	90.57	93.51	100.00	92.00	88.89	95.54	93.84	-1.69	0.690079	0.864632
N	cassette	SP110	chr2	-	chr2:231065682-231072705	chr2:231065682-231067294;chr2:231067439-231072705		chr2:231067295-231067438			97.58	100.00	100.00	NA	NA	93.15	100.00	98.59	97.53	100.00	NA	94.38	100.00	97.95	100.00	90.32	80.00	94.05	100.00	100.00	100.00	NA	NA	98.81	100.00	97.84	100.00	100.00	100.00	97.42	95.41	93.33	100.00	90.32	100.00	95.97	100.00	97.90	-2.10	0.018317	0.373030
K	alternative_donor	ARL6IP4	chr12	+	chr12:123465814-123466117	chr12:123465847-123466117		chr12:123465814-123465846	chr12:123465813-123465814		66.67	74.19	68.75	71.43	63.33	62.96	56.60	69.23	56.41	78.95	84.21	100.00	76.67	75.00	64.29	67.65	76.92	76.92	54.90	56.25	78.57	70.59	71.11	58.82	69.57	NA	76.92	54.55	69.23	72.73	NA	76.92	71.43	71.43	72.73	70.37	70.50	67.95	-2.55	0.937781	0.984606
K	intron_retention		chr1	-	chr1:156437449-156437784				chr1:156437448-156437449;chr1:156437784-156437785		12.50	7.94	26.92	NA	20.00	9.09	7.50	13.51	15.38	9.09	9.09	NA	15.15	10.00	17.24	10.00	10.42	0.00	9.52	12.82	3.12	25.00	25.00	NA	24.00	14.89	14.29	11.76	18.18	NA	13.64	18.33	6.98	16.28	18.03	18.75	8.73	13.16	4.43	0.652409	1.000000
K	jcn_only_AA	ZNHIT3	chr17	+	chr17:34848744-34849803	chr17:34848744-34849769		chr17:34849770-34849803	chr17:34849803-34849804		100.00	100.00	100.00	100.00	96.77	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	NA	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	91.30	100.00	100.00	0.00	0.363217	0.663989
K	alternative_acceptor	POLR2A,SLC16A5	chr17	+	chr17:7417086-7417094	chr17:7417086-7417093		chr17:7417094-7417094	chr17:7417094-7417095		94.78	100.00	90.40	93.33	88.76	100.00	95.45	89.71	95.29	93.62	94.23	91.30	88.14	94.44	94.94	92.45	92.65	91.30	100.00	95.56	91.53	94.74	91.47	91.67	90.48	92.68	94.78	87.50	100.00	90.74	95.83	92.82	100.00	96.15	94.44	93.68	97.72	94.61	-3.11	0.459809	0.762514
N	jcn_only_AA	DGKZ	chr11	+	chr11:46400787-46401041;chr11:46400787-46401018;chr11:46400787-46401044	chr11:46400787-46401003		chr11:46401004-46401018;chr11:46401019-46401041;chr11:46401042-46401044	chr11:46401018-46401019;chr11:46401041-46401042;chr11:46401044-46401045		1.67	0.00	0.00	3.23	1.19	0.00	0.00	0.00	0.00	5.00	3.41	0.00	2.11	3.03	0.00	4.35	0.00	NA	0.00	2.13	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.99	0.57	0.00	0.00	0.00	0.00	0.83	0.83	0.309931	0.663989
K	alternative_acceptor	POLR1D	chr13	+	chr13:28196147-28197011	chr13:28196147-28196977		chr13:28196978-28197011	chr13:28197011-28197012		6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	4.35	4.17	7.69	0.00	0.00	0.00	0.00	2.17	2.17	0.340973	0.709013
N	alternative_acceptor	TNFAIP2	chr14	+	chr14:103598100-103599052;chr14:103598100-103599086;chr14:103598100-103598983	chr14:103598100-103599038		chr14:103598984-103599038;chr14:103599039-103599052;chr14:103599053-103599086	chr14:103599038-103599039;chr14:103599052-103599053;chr14:103599086-103599087		1.10	0.00	0.24	0.00	0.00	0.00	0.00	0.41	0.64	0.66	0.00	0.35	0.58	0.63	0.95	0.52	0.00	0.46	0.00	0.66	0.00	1.57	0.58	1.76	0.00	2.02	0.52	2.41	0.00	1.51	0.51	1.18	5.00	0.99	0.96	1.99	0.00	0.65	0.65	0.962769	0.991031
K	intron_retention	MED25	chr19	+	chr19:50335673-50338242				chr19:50335672-50335673;chr19:50338242-50338243		1.98	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.82	0.00	1.49	0.00	0.00	0.00	0.474743	1.000000
K	intron_retention	NPC1	chr18	-	chr18:21112249-21113318				chr18:21112248-21112249;chr18:21113318-21113319		3.47	0.00	2.38	3.23	3.28	6.25	3.12	1.49	0.00	1.24	1.55	0.00	5.00	0.00	0.00	2.42	0.00	0.00	14.29	2.33	6.67	1.41	2.65	1.45	NA	1.20	5.26	2.36	1.08	2.38	4.55	3.41	17.24	1.40	0.00	1.20	5.00	1.91	-3.09	0.565085	1.000000
K	intron_retention	PSMB10	chr16	-	chr16:67970007-67970117				chr16:67970006-67970007;chr16:67970117-67970118		4.86	4.65	7.23	7.55	6.25	2.84	0.77	1.67	4.47	3.61	2.53	1.12	1.45	2.73	1.30	2.63	2.25	0.00	4.76	4.51	4.14	11.11	6.67	6.94	6.82	3.76	6.74	6.49	4.04	4.73	7.07	7.10	5.21	4.65	9.84	4.52	4.71	4.13	-0.57	0.958284	1.000000
N	jcn_only_AA	AP1G2	chr14	-	chr14:24031803-24032588;chr14:24032492-24032588	chr14:24032512-24032588		chr14:24031803-24032491;chr14:24032492-24032511	chr14:24031802-24031803;chr14:24032491-24032492		7.69	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AA	YIPF3	chr6	-	chr6:43483785-43484464;chr6:43483852-43484464;chr6:43483926-43484464;chr6:43483929-43484464	chr6:43483834-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		100.00	97.06	94.81	NA	100.00	NA	100.00	100.00	93.75	90.91	100.00	100.00	98.78	87.84	93.51	97.06	89.66	100.00	100.00	95.71	100.00	100.00	100.00	97.62	90.48	95.29	91.18	85.71	94.23	100.00	96.49	97.70	100.00	100.00	100.00	93.75	99.39	96.10	-3.29	0.458551	0.720489
K	coord_cassette	SHKBP1	chr19	+	chr19:41094686-41096638	chr19:41094686-41094987;chr19:41095085-41096149;chr19:41096329-41096638		chr19:41094988-41095084;chr19:41096150-41096328			100.00	93.62	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	SIRT6	chr19	-	chr19:4175149-4175676				chr19:4175148-4175149;chr19:4175676-4175677		9.09	9.09	14.29	16.67	12.90	0.00	0.00	5.26	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	10.53	11.54	12.82	11.76	15.22	7.69	7.69	14.29	3.70	4.00	6.25	22.22	3.12	12.12	7.69	13.33	6.25	4.55	7.69	7.17	-0.52	0.551758	1.000000
K	intron_retention		chr20	+	chr20:61430402-61430807				chr20:61430401-61430402;chr20:61430807-61430808		5.88	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.67	5.00	0.00	0.00	0.00	4.55	0.00	0.00	5.26	11.11	6.25	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	jcn_only_AA	LMAN2	chr5	-	chr5:176764467-176764706;chr5:176764526-176764706	chr5:176761338-176764706					0.81	3.68	0.77	2.24	3.21	6.12	0.30	0.43	1.10	0.49	0.37	0.43	0.60	1.57	1.82	1.19	0.37	0.55	3.58	1.67	1.79	1.18	1.13	0.98	4.35	1.09	2.27	1.38	1.90	2.15	0.65	1.01	1.93	2.62	1.78	2.25	2.75	0.95	-1.80	0.110685	0.663989
K	intron_retention	P3H1	chr1	-	chr1:43212524-43212942				chr1:43212523-43212524;chr1:43212942-43212943		12.00	13.89	21.05	16.67	16.22	31.58	6.25	NA	8.33	NA	0.00	NA	10.00	NA	12.50	0.00	9.09	NA	14.71	6.67	15.38	NA	23.08	NA	21.05	0.00	23.08	20.00	19.23	28.57	13.04	12.00	10.00	0.00	12.50	11.76	11.95	9.34	-2.61	0.741108	1.000000
N	alternative_acceptor	SAMD4B	chr19	+	chr19:39873932-39874138;chr19:39873932-39875178;chr19:39873932-39875991	chr19:39873932-39874347		chr19:39874139-39874347;chr19:39874348-39875178;chr19:39875179-39875991	chr19:39874347-39874348;chr19:39875178-39875179;chr19:39875991-39875992		15.79	5.00	11.11	43.48	13.79	33.33	22.73	5.13	11.36	7.55	3.03	5.13	9.09	14.29	24.00	11.63	2.78	12.12	20.00	16.13	26.92	4.55	21.88	4.35	NA	13.33	15.79	7.14	3.33	13.33	25.93	16.67	NA	2.70	4.35	12.82	14.54	15.04	0.49	0.865758	0.954648
N	jcn_only_AA	GADD45A	chr1	+	chr1:68151810-68152032;chr1:68151810-68152102	chr1:68151810-68152123		chr1:68152033-68152102;chr1:68152103-68152123	chr1:68152102-68152103;chr1:68152123-68152124		0.00	0.00	0.00	0.00	NA	0.00	0.00	1.15	0.75	0.00	NA	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	2.27	NA	0.00	0.00	NA	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298195;chr11:57297708-57298199	chr11:57297708-57298130		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		50.00	100.00	NA	NA	NA	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	95.83	100.00	100.00	100.00	33.33	90.00	NA	100.00	NA	NA	33.33	NA	NA	100.00	90.91	45.45	NA	NA	NA	NA	NA	100.00	39.39	-60.61	0.000795	0.083733
K	alternative_acceptor	GALC	chr14	-	chr14:88400344-88406248	chr14:88401223-88406248		chr14:88400344-88401222	chr14:88400343-88400344		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.59	95.65	100.00	100.00	100.00	100.00	100.00	96.67	96.77	100.00	100.00	98.15	90.48	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	96.10	100.00	95.52	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	CDC14B,FNBP1	chr9	-	chr9:132652826-132658116	chr9:132652826-132654287		chr9:132654288-132658116	chr9:132658116-132658117		68.97	90.00	46.34	100.00	92.31	92.31	26.25	65.00	37.10	37.25	34.48	51.52	25.58	51.02	32.32	26.00	32.43	49.02	92.59	64.00	100.00	64.29	50.00	55.17	100.00	68.75	43.75	NA	55.56	75.00	100.00	72.22	100.00	54.17	54.17	48.53	91.30	66.88	-24.42	0.868751	0.967687
N	jcn_only_AD		chr1	-	chr1:151158427-151162606	chr1:151158427-151162480		chr1:151162481-151162606	chr1:151162606-151162607		100.00	100.00	100.00	NA	100.00	NA	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr5	+	chr5:140077664-140078077				chr5:140077663-140077664;chr5:140078077-140078078		9.09	0.00	8.20	5.56	7.50	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.55	6.90	2.50	0.00	6.38	23.81	NA	3.03	6.12	0.00	0.00	3.85	7.14	8.93	0.00	11.63	10.42	11.54	0.00	4.96	4.96	0.335303	1.000000
N	alternative_last_exon	FLCN,RP11-45M22.4	chr17	-	chr17:17117149-17118298;chr17:17110384-17118298;chr17:17106413-17118298	chr17:17117171-17118298	chr17:17110339-17110383;chr17:17104309-17106412	chr17:17115526-17117170			98.11	96.36	93.18	100.00	97.92	100.00	97.67	100.00	100.00	98.39	100.00	100.00	98.08	100.00	100.00	98.95	100.00	100.00	97.30	96.00	95.00	98.39	98.70	100.00	96.88	98.28	97.73	97.37	98.21	100.00	97.26	96.55	96.30	99.01	98.72	100.00	97.09	98.19	1.10	0.137095	0.344715
K	intron_retention	C17orf49	chr17	+	chr17:6918476-6919092				chr17:6918475-6918476;chr17:6919092-6919093		4.04	1.56	3.26	2.17	1.43	3.28	0.00	0.00	0.60	1.18	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	2.00	3.16	2.13	5.36	0.83	3.57	0.00	2.67	3.85	2.38	2.99	2.86	4.30	3.92	1.11	1.82	3.57	3.23	0.56	2.92	2.36	0.450378	1.000000
N	cassette	LST1	chr6	+	chr6:31555096-31556339;chr6:31555096-31556294;chr6:31555096-31556273;chr6:31555096-31555592;chr6:31555096-31555725;chr6:31555096-31555720	chr6:31555096-31555417;chr6:31555511-31555592,chr6:31555511-31556273,chr6:31555511-31556294,chr6:31555511-31556339,chr6:31555511-31555725,chr6:31555511-31555720		chr6:31555418-31555510			9.73	10.75	9.76	10.74	8.38	10.90	29.70	24.24	27.45	22.98	22.71	27.35	33.64	24.41	29.63	30.42	26.11	22.81	14.12	11.63	16.19	11.85	16.49	9.33	17.53	16.18	11.01	25.53	26.80	25.70	19.57	13.98	10.67	9.51	9.78	8.99	15.82	17.88	2.05	0.719515	0.899908
K	alternative_acceptor	ARFRP1	chr20	-	chr20:62333251-62333487	chr20:62333253-62333487		chr20:62333251-62333252	chr20:62333250-62333251		90.91	76.47	82.14	89.47	85.71	95.45	94.74	92.31	92.31	88.00	100.00	100.00	100.00	96.15	90.00	95.24	100.00	NA	100.00	93.75	83.33	88.89	92.86	90.91	NA	100.00	78.57	100.00	100.00	88.37	90.00	79.31	92.31	88.24	92.86	89.80	94.74	93.03	-1.71	0.812040	0.933052
K	intron_retention	SLC8B1	chr12	-	chr12:113744381-113745495				chr12:113744380-113744381;chr12:113745495-113745496		3.45	8.82	3.33	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	2.33	0.00	0.00	NA	4.76	2.56	1.45	5.26	2.04	3.45	14.29	0.00	4.17	0.00	1.64	0.00	4.55	4.60	6.25	3.57	2.00	5.56	5.50	1.28	-4.22	0.234312	1.000000
N	coord_cassette	SHKBP1	chr19	+	chr19:41086843-41092679	chr19:41086843-41089303;chr19:41089392-41089506;chr19:41089624-41092679		chr19:41089304-41089391;chr19:41089507-41089623			92.86	97.62	82.95	NA	91.67	NA	96.67	94.12	95.92	97.06	100.00	100.00	100.00	93.94	93.33	90.24	100.00	100.00	88.24	92.86	80.43	100.00	88.68	100.00	100.00	90.54	81.52	100.00	100.00	100.00	91.89	86.05	84.21	88.89	84.44	92.86	97.15	92.86	-4.29	0.551151	0.748808
N	jcn_only_AA	CYTH4	chr22	+	chr22:37678630-37678904;chr22:37678630-37683264;chr22:37678630-37688642;chr22:37678630-37688661	chr22:37678630-37680038		chr22:37678905-37680038;chr22:37680039-37683264;chr22:37683265-37688642;chr22:37688643-37688661	chr22:37680038-37680039;chr22:37683264-37683265;chr22:37688642-37688643;chr22:37688661-37688662		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr3	+	chr3:52552020-52552327				chr3:52552019-52552020;chr3:52552327-52552328		4.35	9.64	6.67	0.00	6.19	0.00	0.65	0.00	0.00	0.34	0.84	0.13	1.20	1.35	0.00	0.21	1.34	0.00	11.30	3.64	14.29	2.21	5.92	1.68	11.18	1.90	4.49	1.30	4.33	1.23	0.00	1.27	10.42	3.38	6.47	2.05	10.03	1.62	-8.41	0.112883	1.000000
N	alternative_acceptor	CSNK1A1	chr5	-	chr5:148884547-148885045;chr5:148884299-148885045	chr5:148876424-148885045		chr5:148876424-148884298;chr5:148884299-148884546	chr5:148876423-148876424;chr5:148884298-148884299		83.61	65.22	74.03	82.61	83.33	75.00	96.00	97.10	97.37	97.01	97.06	96.23	97.30	96.67	93.94	96.36	96.72	96.97	76.47	82.22	84.00	78.79	87.69	80.39	NA	88.06	83.61	85.71	90.74	88.89	76.92	71.79	75.00	81.25	83.56	80.52	76.47	85.84	9.37	0.473349	0.775711
N	jcn_only_AA	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500583;chr10:35495980-35500588;chr10:35495980-35498239	chr10:35495980-35500181		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		72.05	79.59	75.89	67.92	78.67	53.19	86.76	78.00	68.24	77.97	79.66	69.06	84.42	77.53	70.51	84.62	78.57	67.86	68.42	73.01	66.20	84.62	89.13	75.61	69.44	67.23	70.70	81.40	81.25	66.67	78.53	81.17	80.00	84.07	80.72	82.11	79.80	75.27	-4.52	0.331907	0.663989
K	cassette	RENBP	chrX	-	chrX:153207107-153208306	chrX:153207107-153207402;chrX:153207485-153208306		chrX:153207403-153207484			92.50	80.50	80.95	88.37	80.58	91.49	98.74	94.87	92.59	98.28	96.67	100.00	98.22	92.31	96.30	99.12	98.37	100.00	87.08	82.22	91.25	79.49	85.86	91.67	86.83	91.43	74.07	95.74	90.30	90.48	74.14	78.05	79.08	85.07	85.71	88.14	86.95	91.87	4.92	0.918987	0.978689
N	alternative_acceptor	SHARPIN	chr8	-	chr8:145154306-145154412	chr8:145154334-145154412		chr8:145154306-145154333	chr8:145154305-145154306		100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.22	100.00	94.29	NA	100.00	NA	100.00	100.00	96.55	100.00	100.00	100.00	95.24	100.00	91.43	100.00	100.00	95.45	100.00	100.00	0.00	0.516820	0.803343
K	intron_retention		chr11	+	chr11:60150762-60154189				chr11:60150761-60150762;chr11:60154189-60154190		2.98	4.44	0.00	NA	1.82	NA	0.81	4.04	0.00	0.00	1.64	0.00	8.00	NA	NA	0.00	6.25	NA	3.45	5.43	NA	4.55	3.30	0.00	0.00	2.62	5.71	8.70	4.40	NA	1.02	1.54	0.00	7.37	4.90	0.00	2.13	2.98	0.85	0.988512	1.000000
N	cassette	PANK2	chr20	+	chr20:3891478-3897573	chr20:3891478-3893104;chr20:3893282-3897573		chr20:3893105-3893281			96.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.49	98.00	97.22	100.00	100.00	100.00	93.02	89.66	100.00	100.00	100.00	100.00	96.43	94.44	100.00	100.00	100.00	100.00	89.36	100.00	100.00	100.00	97.10	100.00	96.49	-3.51	0.041547	0.508130
K	intron_retention		chr5	+	chr5:179248142-179249957				chr5:179248141-179248142;chr5:179249957-179249958		7.22	13.23	4.93	6.07	4.55	18.18	0.21	0.30	0.00	0.14	0.17	0.00	0.25	0.29	0.27	0.24	0.20	0.00	16.67	4.13	4.97	2.99	2.89	1.89	20.83	3.36	3.21	1.39	0.92	1.92	10.11	7.66	24.64	3.84	3.24	3.19	14.95	3.75	-11.21	0.646385	1.000000
N	alternative_donor	NR1H2	chr19	+	chr19:50881570-50881778;chr19:50881678-50881778	chr19:50881697-50881778		chr19:50881570-50881677;chr19:50881678-50881696	chr19:50881569-50881570;chr19:50881677-50881678		100.00	100.00	100.00	NA	100.00	NA	97.56	100.00	96.08	100.00	100.00	100.00	100.00	100.00	94.23	100.00	98.04	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	97.14	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.898561	0.977754
K	cassette	PACSIN2	chr22	-	chr22:43272340-43275053	chr22:43272340-43272893;chr22:43273017-43275053		chr22:43272894-43273016			95.92	87.88	93.55	NA	100.00	NA	100.00	100.00	98.31	98.04	99.22	100.00	100.00	100.00	100.00	100.00	98.93	100.00	100.00	97.37	86.67	100.00	100.00	100.00	100.00	100.00	93.88	100.00	100.00	100.00	89.66	93.75	100.00	100.00	100.00	100.00	100.00	98.69	-1.31	0.759665	0.925284
K	intron_retention		chr5	-	chr5:176916834-176917870				chr5:176916833-176916834;chr5:176917870-176917871		12.75	16.67	15.38	12.50	21.88	18.18	0.00	10.53	0.00	0.00	3.95	0.00	0.00	3.85	0.00	3.03	6.73	9.09	NA	8.45	9.09	23.08	25.42	NA	NA	10.96	18.60	15.38	15.87	NA	11.67	12.50	16.67	17.24	16.92	17.86	8.34	10.75	2.41	0.974140	1.000000
N	alternative_donor	DDX23,NCOR2	chr12	-	chr12:124820179-124821298	chr12:124820179-124821184		chr12:124821185-124821298	chr12:124821298-124821299		8.82	0.00	8.00	NA	3.85	NA	2.56	3.70	0.00	5.32	5.79	7.27	4.55	0.00	6.67	4.41	4.26	5.36	NA	0.00	NA	3.03	6.85	2.17	0.00	3.23	7.14	9.68	3.92	6.90	9.09	8.33	NA	9.30	4.55	6.67	1.28	3.46	2.18	0.268788	0.644832
N	coord_cassette	H2AFV	chr7	-	chr7:44875258-44887567	chr7:44875258-44880497;chr7:44880612-44882875;chr7:44882954-44887567		chr7:44880498-44880611;chr7:44882876-44882953			92.68	100.00	100.00	97.30	98.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	97.47	100.00	100.00	100.00	100.00	100.00	0.00	0.558364	0.748909
N	jcn_only_AD	PML	chr15	+	chr15:74326872-74335329;chr15:74330297-74335329;chr15:74326947-74335329	chr15:74333912-74335329		chr15:74326872-74326946;chr15:74326947-74330296;chr15:74330297-74333911	chr15:74326871-74326872;chr15:74326946-74326947;chr15:74330296-74330297		0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.89	0.00	0.00	NA	0.00	0.00	0.00	0.90	0.00	NA	8.33	0.00	1.12	0.00	NA	NA	4.00	0.00	0.00	0.00	0.00	NA	2.11	0.00	0.00	0.00	0.00	NA	1.67	0.00	0.00	0.00	0.178164	0.657607
K	cassette	SUGP2	chr19	-	chr19:19106090-19112421	chr19:19106090-19109732;chr19:19109795-19112421		chr19:19109733-19109794			0.00	0.00	3.03	NA	3.70	NA	5.56	0.00	0.00	7.69	0.00	NA	3.45	0.00	4.35	10.00	0.00	NA	0.00	0.00	3.23	5.00	0.00	0.00	0.00	0.00	5.13	4.76	0.00	0.00	0.00	0.00	0.00	2.86	1.92	2.56	0.00	0.00	0.00	0.189018	0.709176
N	intron_retention		chr19	-	chr19:36398483-36399072				chr19:36398482-36398483;chr19:36399072-36399073		82.35	75.38	88.89	90.00	85.33	68.42	78.57	86.05	91.30	87.50	94.74	78.57	95.92	87.84	100.00	81.25	96.08	88.24	48.72	62.07	81.82	64.29	83.33	40.00	82.93	73.33	86.00	87.88	90.91	82.35	54.17	70.59	52.00	68.00	72.97	30.77	76.97	77.84	0.87	0.809652	1.000000
K	cassette	CIRBP	chr19	+	chr19:1272051-1274305	chr19:1272051-1273599;chr19:1273715-1274305		chr19:1273600-1273714			10.81	7.14	18.18	30.23	10.00	23.88	NA	NA	19.05	NA	NA	NA	8.33	NA	30.00	7.69	27.27	NA	7.32	21.43	9.57	23.81	12.07	46.15	4.58	23.33	28.00	31.82	16.67	26.92	8.70	12.50	6.06	35.00	33.33	41.94	7.14	16.12	8.98	0.082560	0.641134
K	intron_retention	AL441883.1	chr6	-	chr6:13615854-13615940				chr6:13615853-13615854;chr6:13615940-13615941		9.52	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	3.45	2.63	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.476330	1.000000
N	alternative_acceptor	ABRACL,ORC3	chr6	+	chr6:139350013-139355291;chr6:139350013-139355295	chr6:139350013-139354885		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		5.06	1.64	5.66	0.00	4.26	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	1.05	1.05	0.223681	0.676733
K	intron_retention	GSTK1	chr7	+	chr7:142960679-142961178				chr7:142960678-142960679;chr7:142961178-142961179		3.95	2.08	3.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.43	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	5.26	0.00	0.00	1.56	0.00	0.00	2.13	4.05	0.00	1.71	1.54	3.03	5.13	2.33	1.47	1.25	1.69	0.00	2.58	2.58	0.337532	1.000000
N	alternative_donor	ACO2	chr22	+	chr22:41922458-41923291	chr22:41923207-41923291		chr22:41922458-41923206	chr22:41922457-41922458		1.37	3.45	1.20	8.06	7.87	4.88	5.47	2.50	13.89	9.32	9.15	2.08	5.19	3.57	8.06	13.49	7.87	2.47	3.03	3.23	2.83	3.66	4.00	1.12	1.72	0.00	4.11	4.48	6.06	2.94	1.33	4.11	1.74	1.71	4.24	1.95	3.24	1.94	-1.31	0.128241	0.540946
N	cassette	RGL2	chr6	-	chr6:33261844-33262753;chr6:33261844-33262772	chr6:33261844-33262464;chr6:33262540-33262753,chr6:33262540-33262772		chr6:33262465-33262539			100.00	100.00	98.31	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	94.12	100.00	90.91	93.33	100.00	100.00	93.10	95.16	NA	100.00	NA	100.00	95.92	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.176383	0.709176
N	alternative_donor	LRP1	chr12	+	chr12:57578686-57578863	chr12:57578774-57578863		chr12:57578686-57578773	chr12:57578685-57578686		100.00	91.43	100.00	NA	NA	NA	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	87.50	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.06	100.00	100.00	0.00	0.709032	0.877208
N	alternative_acceptor		chr3	+	chr3:41279568-41281312;chr3:41279568-41286417;chr3:41279568-41279861;chr3:41279568-41281309;chr3:41279568-41281150	chr3:41279568-41280624		chr3:41279862-41280624;chr3:41280625-41281150;chr3:41281151-41281309;chr3:41281310-41281312;chr3:41281313-41286417	chr3:41280624-41280625;chr3:41281150-41281151;chr3:41281309-41281310;chr3:41281312-41281313;chr3:41286417-41286418		98.18	100.00	96.00	100.00	98.59	94.81	100.00	100.00	100.00	97.83	100.00	98.84	100.00	97.56	98.28	100.00	100.00	100.00	92.31	97.22	100.00	97.37	98.51	96.30	94.74	98.15	97.92	97.50	98.28	97.80	98.08	93.22	92.59	97.06	98.72	97.66	97.37	98.12	0.75	0.361918	0.709013
K	intron_retention	TSTA3	chr8	-	chr8:144696868-144696956				chr8:144696867-144696868;chr8:144696956-144696957		0.00	0.00	3.70	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	NA	0.00	NA	11.76	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	intron_retention	MXD1	chr2	+	chr2:70165472-70169772				chr2:70165471-70165472;chr2:70169772-70169773		95.06	100.00	95.66	91.18	89.42	85.92	93.75	98.14	94.34	100.00	94.59	100.00	100.00	98.38	100.00	95.45	100.00	100.00	81.19	90.95	85.13	92.96	91.22	100.00	88.52	95.66	95.35	91.07	93.58	92.97	87.58	85.41	78.26	95.77	96.59	95.86	91.13	95.36	4.23	0.462218	1.000000
K	mutually_exclusive	U2AF1,U2AF1L5	chr21	-	chr21:44515854-44520686,chr21:44520725-44524424;chr21:44515854-44521475,chr21:44521543-44524424	chr21:44515854-44520562,chr21:44520630-44524424	chr21:44520687-44520724;chr21:44521476-44521542	chr21:44520563-44520629			77.22	67.81	76.77	91.85	86.06	94.19	75.58	91.84	81.03	88.02	78.36	86.41	68.80	93.10	86.84	88.43	79.55	90.57	74.70	82.76	75.00	87.58	79.17	91.67	66.67	79.59	71.25	88.24	81.04	92.76	71.43	67.47	67.09	84.97	80.86	90.23	68.31	81.18	12.87	0.013099	0.078591
N	jcn_only_AD	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295843-71297631;chr2:71295972-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71295467-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		2.78	0.00	0.00	0.00	0.00	0.00	1.07	0.42	0.00	1.18	0.98	0.00	1.01	0.00	0.00	0.67	1.85	0.64	0.00	0.00	0.00	2.94	0.83	0.00	0.00	0.39	1.56	0.00	1.12	0.00	0.00	5.66	0.00	0.00	0.00	1.12	0.00	0.20	0.20	0.626198	0.816300
K	intron_retention	LGALS9	chr17	+	chr17:25969375-25970550				chr17:25969374-25969375;chr17:25970550-25970551		5.81	10.53	25.00	NA	4.00	7.69	2.28	1.83	1.25	1.91	2.30	0.93	1.90	0.77	2.86	2.88	1.14	1.15	NA	4.24	0.00	5.88	5.88	8.70	33.33	3.25	4.35	9.52	2.27	4.17	4.76	13.33	0.00	18.52	11.90	16.67	2.28	3.75	1.47	0.665327	1.000000
K	alternative_first_exon	C18orf32,RPL17-C18orf32	chr18	-	chr18:47010142-47013121;chr18:47010142-47015728;chr18:47010142-47013576,chr18:47010142-47013412;chr18:47010142-47014869	chr18:47010142-47012802	chr18:47015729-47015920;chr18:47013577-47013601;chr18:47014870-47014936	chr18:47012803-47012983			3.12	0.00	5.36	NA	5.88	NA	0.00	0.00	0.00	0.00	2.90	0.00	1.41	1.75	0.00	4.65	1.59	0.00	NA	0.00	0.00	0.00	2.70	0.00	NA	0.00	5.17	0.00	4.00	0.00	5.56	5.56	9.09	3.85	5.13	0.00	0.70	0.88	0.17	0.726665	0.808414
N	cassette	H2AFV	chr7	-	chr7:44880612-44887567;chr7:44875258-44887567	chr7:44875258-44882875,chr7:44880612-44882875;chr7:44882954-44887567		chr7:44882876-44882953			68.52	85.00	76.23	81.08	88.42	80.77	94.63	82.93	90.72	93.55	92.08	90.00	90.61	75.00	85.15	90.24	90.00	91.18	85.71	88.37	83.33	92.86	79.67	87.10	95.45	81.58	87.76	89.80	91.54	90.00	88.00	79.53	78.16	76.79	89.55	87.67	88.16	82.25	-5.91	0.100263	0.680881
K	alternative_acceptor	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6920334-6920579	chr17:6920334-6920575		chr17:6920576-6920579	chr17:6920579-6920580		22.31	11.63	16.53	18.24	15.16	17.63	18.29	18.52	18.75	11.11	14.68	17.14	13.73	17.07	19.87	13.64	17.53	17.46	13.02	17.72	15.55	19.12	16.77	19.57	12.81	17.09	19.31	21.67	19.86	20.65	21.39	16.67	17.53	20.24	18.52	17.33	13.38	18.12	4.74	0.011534	0.475629
K	jcn_only_AA	RPL3	chr22	-	chr22:39712847-39713465	chr22:39713027-39713465		chr22:39712847-39713026	chr22:39712846-39712847		8.70	0.00	6.00	1.08	0.85	0.43	0.12	2.56	3.96	0.71	0.14	0.22	0.00	1.41	3.28	0.67	0.29	0.00	1.61	12.16	3.40	3.20	1.73	1.74	2.03	13.04	5.69	1.20	0.32	1.04	30.99	22.96	2.44	1.50	1.17	1.64	0.86	10.43	9.56	0.062218	0.663989
K	cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28994612-28995525	chr16:28994612-28995106;chr16:28995279-28995525		chr16:28995107-28995278		chr16:28994513-28994611;chr16:28995526-28995864	85.07	88.49	83.33	82.48	87.14	78.29	100.00	97.37	92.98	94.79	96.49	96.30	98.23	100.00	92.96	92.56	96.00	93.02	84.71	89.58	91.89	86.08	84.15	83.72	90.03	93.02	90.32	89.22	94.52	92.21	82.86	83.72	83.10	87.60	87.74	84.85	89.26	91.30	2.04	0.891023	0.967236
K	alternative_donor	AKR1B1,NT5C3A	chr7	-	chr7:134132134-134132731	chr7:134132134-134132212		chr7:134132213-134132731	chr7:134132731-134132732		5.81	2.75	6.40	4.67	1.62	1.05	0.94	1.92	2.46	0.97	0.00	0.00	1.71	2.63	3.36	0.83	1.12	0.00	3.20	5.71	4.39	4.00	1.23	3.48	3.70	8.77	7.51	4.72	2.75	2.16	8.13	9.29	1.71	6.82	4.13	3.23	2.23	5.76	3.53	0.038391	0.357790
K	intron_retention	CD37	chr19	+	chr19:49839044-49840165				chr19:49839043-49839044;chr19:49840165-49840166		0.93	0.00	2.63	0.00	0.00	0.00	1.05	1.14	0.00	0.00	0.00	0.00	0.00	1.42	3.23	0.00	0.00	0.00	0.00	2.60	3.12	0.00	1.41	1.27	8.89	2.41	0.00	2.41	0.55	0.00	0.00	0.00	2.56	0.00	0.99	0.00	0.53	1.28	0.75	0.995734	1.000000
N	jcn_only_AD	MGRN1	chr16	+	chr16:4738559-4738796;chr16:4733934-4738796;chr16:4736625-4738796	chr16:4736305-4738796					16.67	11.76	13.64	NA	25.00	21.05	14.29	13.51	15.09	29.17	27.42	34.15	18.75	19.15	10.91	19.61	34.78	20.69	14.29	21.88	15.38	6.25	28.30	18.75	0.00	14.29	8.70	16.67	33.33	13.64	20.00	8.11	10.00	34.62	25.00	17.78	13.02	17.91	4.89	0.074370	0.612648
N	cassette	DGUOK	chr2	+	chr2:74174016-74185272;chr2:74174034-74185272;chr2:74174034-74184251;chr2:74174016-74184251	chr2:74174016-74177711,chr2:74174034-74177711;chr2:74177860-74184251,chr2:74177860-74185272		chr2:74177712-74177859			25.77	25.00	22.22	32.76	38.35	19.18	35.90	44.44	28.57	52.17	43.59	47.37	43.64	45.83	33.33	46.43	41.46	40.00	18.75	27.27	19.49	48.15	38.46	40.62	17.14	32.69	28.09	51.85	46.43	47.83	18.84	22.88	19.66	39.58	33.82	27.12	22.33	29.98	7.65	0.373227	0.709176
N	alternative_acceptor	C1orf162	chr1	+	chr1:112020051-112020272;chr1:112020051-112020856	chr1:112020051-112020347		chr1:112020273-112020347;chr1:112020348-112020856	chr1:112020347-112020348;chr1:112020856-112020857		87.74	80.93	80.95	86.21	83.88	82.61	84.62	94.12	83.33	92.45	93.09	90.77	87.94	73.33	NA	87.27	89.90	86.67	87.07	87.50	80.30	83.33	76.37	83.87	82.73	70.97	83.16	80.77	82.77	78.95	83.33	80.49	81.15	77.19	71.81	78.79	83.68	85.41	1.74	0.758982	0.910949
K	intron_retention		chr19	-	chr19:3544731-3544806				chr19:3544730-3544731;chr19:3544806-3544807		5.56	0.59	7.89	2.53	3.72	2.24	1.04	0.34	0.00	1.67	1.08	0.00	0.00	0.43	0.83	0.83	0.71	0.72	1.43	2.67	0.57	5.77	7.06	0.00	2.53	2.80	5.26	2.27	2.10	1.65	2.62	7.69	2.81	2.89	4.49	3.88	1.23	2.65	1.41	0.663507	1.000000
K	intron_retention	CNBP	chr3	-	chr3:128890121-128890288				chr3:128890120-128890121;chr3:128890288-128890289		8.16	3.03	8.25	5.88	5.00	NA	0.37	0.00	0.00	0.69	0.57	0.00	0.84	0.00	1.58	0.64	0.93	0.00	0.00	6.74	5.17	6.85	5.53	10.92	NA	7.84	4.29	4.04	2.47	3.64	9.72	7.08	0.00	5.99	3.98	9.40	0.37	7.29	6.92	0.143881	1.000000
K	alternative_donor	DLG4	chr17	-	chr17:7107572-7108264;chr17:7107572-7111492	chr17:7107572-7111393		chr17:7108265-7111393;chr17:7111394-7111492	chr17:7111393-7111394;chr17:7111492-7111493		0.00	0.00	9.52	NA	NA	NA	4.76	0.00	0.00	NA	4.55	NA	6.45	0.00	0.00	NA	0.00	0.00	NA	NA	NA	NA	NA	NA	0.00	0.00	10.00	NA	0.00	NA	NA	15.38	NA	NA	0.00	NA	2.38	0.00	-2.38	0.188843	0.565974
N	cassette	GPS2,RP11-542C16.2	chr17	-	chr17:7217041-7217398;chr17:7216611-7217398	chr17:7217041-7217224,chr17:7216611-7217224;chr17:7217308-7217398		chr17:7217225-7217307			100.00	100.00	100.00	95.83	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	93.10	100.00	96.88	100.00	100.00	98.11	100.00	97.50	97.37	98.28	94.52	97.87	97.37	97.83	98.31	100.00	100.00	0.00	0.435182	0.742099
N	alternative_donor	RCE1	chr11	+	chr11:66611836-66612339	chr11:66612249-66612339		chr11:66611836-66612248	chr11:66611835-66611836		6.25	0.00	10.53	NA	0.00	NA	7.69	NA	4.00	0.00	3.85	NA	4.76	0.00	5.88	4.17	2.44	0.00	NA	9.09	8.33	0.00	3.70	7.69	0.00	8.33	11.11	NA	9.09	NA	5.00	3.70	NA	4.76	5.00	6.25	2.38	6.25	3.87	0.329547	0.650093
N	alternative_donor	NCAPH2	chr22	+	chr22:50957840-50959393;chr22:50957750-50959393	chr22:50958067-50959393		chr22:50957750-50957839;chr22:50957840-50958066	chr22:50957749-50957750;chr22:50957839-50957840		5.88	2.04	3.33	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	3.33	NA	NA	0.00	3.70	NA	3.70	10.53	10.00	0.00	3.70	NA	1.75	10.00	8.70	NA	0.00	NA	6.45	7.69	5.56	10.53	3.57	6.90	2.69	8.22	5.54	0.010036	0.213240
K	intron_retention		chr12	+	chr12:53861078-53861588				chr12:53861077-53861078;chr12:53861588-53861589		4.51	0.00	5.43	0.00	0.00	0.00	0.87	0.56	0.92	0.64	1.07	0.00	0.59	1.20	1.28	0.51	0.97	0.41	0.00	5.68	0.00	3.05	1.98	4.12	0.00	6.25	4.83	2.17	1.31	1.34	5.33	2.74	0.00	4.33	4.57	5.23	0.00	4.92	4.92	0.037207	1.000000
K	intron_retention	TBCE	chr1	+	chr1:235611756-235611984				chr1:235611755-235611756;chr1:235611984-235611985		33.33	4.08	40.00	0.00	5.41	5.88	42.86	NA	57.14	40.91	37.93	50.00	40.74	NA	64.00	48.15	28.12	41.18	7.69	15.38	3.57	36.84	28.57	57.14	0.00	18.18	25.00	20.00	24.00	21.43	10.53	22.73	2.38	16.13	25.93	39.13	5.88	16.78	10.90	0.842975	1.000000
N	jcn_only_AA	RNPEPL1	chr2	+	chr2:241515028-241515984;chr2:241515028-241516016	chr2:241515028-241515951		chr2:241515952-241515984;chr2:241515985-241516016	chr2:241515984-241515985;chr2:241516016-241516017		93.10	92.00	85.71	100.00	93.02	NA	93.81	90.62	92.50	92.31	91.18	93.33	90.18	93.94	96.43	93.10	88.37	NA	89.29	100.00	93.33	100.00	81.82	NA	94.12	90.48	100.00	100.00	92.73	NA	81.25	95.45	93.75	93.10	95.92	92.31	92.88	91.86	-1.02	0.820029	0.927675
N	alternative_donor	EHBP1L1	chr11	+	chr11:65358064-65359270	chr11:65358114-65359270		chr11:65358064-65358113	chr11:65358063-65358064		3.51	0.79	7.56	1.44	0.83	0.00	0.74	1.67	0.65	0.00	0.00	0.00	2.13	1.03	3.02	0.00	2.04	4.35	0.90	4.15	1.87	1.59	1.97	2.27	0.89	5.61	4.88	4.72	3.11	5.04	2.04	6.02	1.07	4.76	4.62	4.55	0.90	2.77	1.88	0.041514	0.375646
K	intron_retention	MGAT4B	chr5	-	chr5:179226311-179226505				chr5:179226310-179226311;chr5:179226505-179226506		5.33	2.25	3.70	4.55	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	6.52	2.27	0.00	2.41	0.00	0.00	0.00	2.17	0.00	2.78	0.00	1.75	8.93	0.00	0.00	1.30	0.00	0.00	0.88	0.88	0.646577	1.000000
K	cassette	C20orf24	chr20	+	chr20:35236404-35240412;chr20:35236222-35240412	chr20:35236222-35238003,chr20:35236404-35238003;chr20:35238162-35240412		chr20:35238004-35238161			88.60	77.65	89.93	89.19	83.13	93.75	93.33	92.86	93.89	90.91	95.06	90.48	94.07	93.84	93.44	91.80	92.11	90.91	89.09	90.57	89.22	88.46	92.98	90.48	100.00	92.07	89.54	90.12	89.66	83.78	90.00	90.87	88.61	89.76	91.60	90.62	91.21	91.32	0.11	0.794349	0.936947
K	intron_retention	AGPAT2	chr9	-	chr9:139567731-139567851				chr9:139567730-139567731;chr9:139567851-139567852		91.96	94.13	100.00	93.75	95.00	90.52	91.67	92.86	100.00	100.00	90.91	NA	92.96	90.62	96.67	100.00	92.31	NA	93.63	94.55	93.79	100.00	95.24	NA	94.02	90.00	91.94	100.00	95.95	90.48	92.77	93.65	91.74	95.00	93.62	91.67	93.29	92.36	-0.93	0.853523	1.000000
K	alternative_acceptor	SCAMP2	chr15	-	chr15:75140987-75142854	chr15:75141043-75142854		chr15:75140987-75141042	chr15:75140986-75140987		94.87	100.00	97.87	NA	97.14	NA	96.18	95.74	97.22	87.50	95.50	97.22	97.16	96.36	90.91	95.52	92.00	94.12	100.00	89.19	88.24	93.94	93.26	96.55	94.74	95.12	94.12	96.00	91.78	93.75	84.62	88.24	100.00	94.64	94.12	92.86	98.58	95.00	-3.58	0.039424	0.560254
N	alternative_donor	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130929817;chr9:130929444-130931354	chr9:130929444-130931330		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		66.67	66.67	72.92	66.67	69.39	83.33	73.08	80.00	80.95	72.22	83.87	90.91	83.78	NA	80.77	86.21	82.86	87.50	70.45	60.87	71.05	69.23	73.33	75.00	70.91	76.47	67.50	85.19	73.77	84.00	81.82	60.47	69.05	67.74	63.33	64.29	70.68	76.47	5.79	0.863593	0.964775
K	intron_retention	LRRC25	chr19	-	chr19:18507783-18508262				chr19:18507782-18507783;chr19:18508262-18508263		63.49	55.56	60.45	NA	55.00	NA	59.06	53.12	46.67	70.00	60.24	NA	54.55	53.54	61.90	69.05	65.42	NA	71.43	55.34	57.14	73.33	61.73	NA	51.06	41.67	62.50	56.67	54.90	NA	41.03	56.32	55.56	66.67	61.64	50.00	55.56	53.33	-2.23	0.792862	1.000000
K	intron_retention		chr10	+	chr10:124922345-124924562				chr10:124922344-124922345;chr10:124924562-124924563		33.33	15.15	29.17	25.00	26.00	17.95	30.77	25.00	25.93	36.36	25.00	NA	20.00	28.57	33.33	31.25	25.00	NA	26.67	47.62	16.22	37.04	36.11	38.10	13.79	35.29	36.36	24.00	39.47	29.41	60.00	42.11	19.23	25.81	35.29	30.23	19.62	34.31	14.70	0.297477	1.000000
K	intron_retention	CARS	chr11	-	chr11:3022479-3023199				chr11:3022478-3022479;chr11:3023199-3023200		5.00	0.00	4.23	3.03	2.44	4.41	0.00	2.94	4.00	8.33	7.50	NA	6.90	3.70	8.00	7.69	3.03	NA	2.15	3.45	2.50	NA	5.66	5.00	0.94	2.22	1.28	7.14	6.25	9.43	4.08	4.55	2.30	10.00	5.13	4.35	1.54	3.58	2.03	0.980093	1.000000
N	alternative_donor	ITPA	chr20	+	chr20:3199641-3202486;chr20:3202113-3202486	chr20:3199279-3202486		chr20:3199279-3199640;chr20:3199641-3202112	chr20:3199278-3199279;chr20:3199640-3199641		100.00	98.35	95.65	100.00	98.44	100.00	98.39	92.31	96.67	98.25	98.31	100.00	98.80	100.00	92.31	98.57	98.67	97.62	99.08	100.00	100.00	95.24	96.77	93.55	98.75	100.00	95.65	97.44	93.65	97.44	100.00	94.44	98.97	96.36	95.77	96.55	98.78	100.00	1.22	0.997049	0.998383
N	jcn_only_AD	SCYL1	chr11	+	chr11:65305760-65305912;chr11:65305796-65305912;chr11:65305559-65305912	chr11:65305654-65305912					6.67	3.03	8.16	5.48	4.76	6.37	4.88	6.06	3.85	3.39	0.00	0.00	3.03	10.00	8.51	3.70	2.22	0.00	4.96	2.00	3.01	5.56	4.17	0.00	10.00	2.63	8.47	9.38	9.38	3.77	7.58	7.69	8.11	5.56	11.90	1.85	4.92	6.37	1.45	0.928830	0.961114
K	intron_retention	UBAC1	chr9	-	chr9:138837097-138837734				chr9:138837096-138837097;chr9:138837734-138837735		1.67	0.00	4.00	NA	1.27	NA	0.00	0.00	0.00	0.00	2.86	0.00	0.63	0.00	2.86	0.00	2.70	NA	1.85	4.35	1.89	0.00	1.87	NA	0.00	5.26	5.43	0.00	5.62	NA	5.88	1.33	0.00	0.00	1.71	3.70	0.00	3.01	3.01	0.412520	1.000000
N	jcn_only_AD	FAM65A	chr16	+	chr16:67574548-67575332	chr16:67574608-67575332		chr16:67574548-67574607	chr16:67574547-67574548		100.00	100.00	97.83	NA	NA	NA	98.44	100.00	100.00	100.00	93.94	NA	100.00	97.14	100.00	97.44	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	85.71	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	96.97	96.55	100.00	100.00	0.00	0.410473	0.673762
N	cassette	RAB1A	chr2	-	chr2:65316205-65325104;chr2:65316205-65331867;chr2:65315825-65331867;chr2:65315825-65325104	chr2:65316205-65318116,chr2:65315825-65318116;chr2:65318213-65331867,chr2:65318213-65325104		chr2:65318117-65318212			82.23	90.70	91.74	96.30	94.34	NA	96.36	96.88	97.47	98.81	97.59	98.80	97.96	97.03	97.65	98.28	98.31	96.92	93.75	86.12	88.89	97.40	95.75	95.56	NA	91.39	93.63	100.00	100.00	98.36	74.73	75.10	60.00	93.43	94.47	90.27	93.75	88.75	-5.00	0.970051	0.992393
N	cassette	MRPS6	chr21	+	chr21:35446046-35497640;chr21:35469583-35497640;chr21:35445569-35497640	chr21:35469583-35475133,chr21:35446046-35475133,chr21:35445569-35475133;chr21:35475208-35497640		chr21:35475134-35475207			0.00	0.00	1.65	3.03	0.00	3.85	3.03	1.12	1.06	6.72	4.26	4.57	2.17	2.14	3.14	7.25	8.70	8.33	NA	0.00	1.14	3.90	0.00	5.15	NA	0.00	1.65	0.00	0.00	3.53	0.00	1.15	0.00	2.70	0.00	2.90	1.08	0.00	-1.08	0.421588	0.730041
N	alternative_acceptor	CYB561A3	chr11	-	chr11:61120640-61121255;chr11:61121035-61121255	chr11:61120612-61121255		chr11:61120612-61120639;chr11:61120640-61121034	chr11:61120611-61120612;chr11:61120639-61120640		98.39	100.00	98.41	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.14	95.83	99.12	98.78	100.00	88.46	99.19	99.07	98.78	100.00	100.00	97.89	98.56	85.71	99.07	98.56	98.81	100.00	99.16	-0.84	0.253175	0.709013
K	alternative_donor	C12orf57	chr12	+	chr12:7053729-7054933	chr12:7053816-7054933		chr12:7053729-7053815	chr12:7053728-7053729		46.15	52.63	57.45	57.45	64.15	50.44	78.57	NA	72.73	76.92	78.57	100.00	78.57	NA	82.61	92.86	85.71	NA	47.69	48.00	55.41	42.86	55.00	56.00	51.56	66.67	60.38	NA	75.00	62.50	36.36	41.67	46.03	65.62	52.38	51.72	52.09	47.08	-5.02	0.300027	0.650093
N	alternative_last_exon		chr7	+	chr7:72641500-72643626;chr7:72641500-72645844	chr7:72641500-72643600	chr7:72645845-72645924	chr7:72643601-72644294			100.00	100.00	100.00	NA	NA	100.00	NA	96.97	92.31	NA	NA	NA	NA	97.70	95.83	NA	NA	NA	100.00	97.09	100.00	NA	NA	100.00	100.00	98.69	100.00	100.00	NA	100.00	98.10	100.00	100.00	NA	100.00	100.00	100.00	97.90	-2.10	0.009112	0.161746
K	intron_retention		chr21	+	chr21:45744801-45745035				chr21:45744800-45744801;chr21:45745035-45745036		2.80	3.76	9.21	4.17	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	1.41	0.83	0.56	0.00	1.16	0.00	1.71	4.44	5.00	0.00	2.70	0.00	4.21	1.61	2.08	2.56	2.70	5.00	2.73	1.30	3.37	2.68	1.93	0.00	-1.93	0.968488	1.000000
K	jcn_only_AA	EIF3E	chr8	-	chr8:109241425-109247226	chr8:109245902-109247226		chr8:109241425-109245901	chr8:109241424-109241425		8.57	29.55	2.97	43.24	19.74	85.71	3.76	0.00	2.67	5.02	2.55	4.85	5.10	8.00	4.55	4.76	5.70	6.02	41.67	8.33	14.71	5.95	12.75	8.14	NA	9.09	4.35	5.45	11.36	20.34	17.65	7.69	50.00	6.38	7.29	10.16	29.55	8.45	-21.10	0.138520	0.663989
K	alternative_acceptor	FERMT3	chr11	+	chr11:63987131-63987216	chr11:63987131-63987211		chr11:63987212-63987216	chr11:63987216-63987217		100.00	100.00	100.00	100.00	98.02	NA	100.00	100.00	98.48	100.00	100.00	100.00	100.00	100.00	97.18	100.00	100.00	100.00	100.00	100.00	100.00	98.75	95.10	100.00	100.00	100.00	94.02	97.27	100.00	100.00	100.00	100.00	92.59	97.30	97.86	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr8	-	chr8:145649306-145649423				chr8:145649305-145649306;chr8:145649423-145649424		9.76	10.00	15.85	10.38	14.54	9.72	2.90	5.08	4.41	2.00	9.64	4.44	2.06	13.89	13.56	9.23	8.33	0.00	6.89	10.00	11.01	15.00	15.74	8.11	8.24	8.33	10.69	10.61	15.00	8.41	18.67	12.75	9.39	6.98	10.00	6.41	7.56	9.88	2.31	0.211647	1.000000
N	jcn_only_AA		chr16	+	chr16:89620972-89622328;chr16:89620972-89622285	chr16:89620972-89623294		chr16:89622286-89622328;chr16:89622329-89623294	chr16:89622328-89622329;chr16:89623294-89623295		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	83.33	95.83	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	alternative_acceptor	SF3A2	chr19	+	chr19:2245555-2246751	chr19:2245555-2246694		chr19:2246695-2246751	chr19:2246751-2246752		3.33	7.32	5.56	0.00	2.70	NA	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	3.85	8.00	3.70	3.70	4.35	0.00	3.23	2.63	4.35	1.92	6.67	3.70	7.89	9.09	3.85	6.25	4.76	0.00	3.28	3.28	0.845941	0.946146
N	coord_cassette	CLASRP	chr19	+	chr19:45570853-45572323	chr19:45570853-45571272;chr19:45571313-45571677;chr19:45571739-45572323		chr19:45571273-45571312;chr19:45571678-45571738			79.31	81.93	76.92	80.95	89.66	88.46	NA	NA	NA	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	82.69	85.00	80.49	90.91	100.00	75.00	74.29	100.00	95.83	NA	87.50	100.00	80.00	81.13	67.53	93.75	83.33	88.46	81.93	82.50	0.57	0.530454	0.733074
K	intron_retention	SRRM2	chr16	+	chr16:2820229-2820352				chr16:2820228-2820229;chr16:2820352-2820353		86.11	93.33	95.12	100.00	97.96	100.00	NA	NA	60.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	96.43	100.00	93.02	100.00	100.00	100.00	100.00	90.32	95.83	100.00	93.62	91.67	94.29	94.44	96.77	100.00	91.43	95.60	96.77	92.31	-4.46	0.414170	1.000000
K	intron_retention	NIFK	chr2	-	chr2:122485933-122486052				chr2:122485932-122485933;chr2:122486052-122486053		NA	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	18.18	3.85	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.629122	1.000000
N	alternative_acceptor	STXBP2	chr19	+	chr19:7708132-7709499	chr19:7708132-7709467		chr19:7709468-7709499	chr19:7709499-7709500		4.92	8.14	9.04	9.43	8.62	7.41	0.00	0.00	0.90	0.00	0.00	0.00	0.66	1.04	1.67	0.00	0.00	1.15	7.10	3.80	4.39	9.52	6.75	5.80	17.60	5.07	5.39	4.05	3.52	4.60	8.96	8.23	8.06	6.25	7.63	7.53	7.58	4.36	-3.22	0.342196	0.709013
N	alternative_acceptor	RNPEPL1	chr2	+	chr2:241515028-241515984;chr2:241515028-241515951	chr2:241515028-241516016		chr2:241515952-241515984;chr2:241515985-241516016	chr2:241515984-241515985;chr2:241516016-241516017		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.28	0.00	0.00	0.00	6.98	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA		chr7	+	chr7:112108171-112110953;chr7:112108171-112112219	chr7:112108171-112112273		chr7:112110954-112112219;chr7:112112220-112112273	chr7:112112219-112112220;chr7:112112273-112112274		95.77	100.00	93.94	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.19	100.00	94.59	NA	100.00	91.94	94.74	100.00	94.87	97.52	96.74	100.00	98.26	97.37	100.00	100.00	100.00	0.00	0.192373	0.663989
K	jcn_only_AA	BRD2	chr6	+	chr6:32944714-32945193;chr6:32944714-32945036	chr6:32944714-32945218		chr6:32945037-32945193;chr6:32945194-32945218	chr6:32945193-32945194;chr6:32945218-32945219		98.10	100.00	100.00	100.00	100.00	NA	97.30	98.46	96.69	98.27	94.49	99.13	98.04	97.14	96.62	97.37	97.81	98.10	NA	99.37	100.00	98.52	97.44	98.98	NA	100.00	99.19	100.00	96.77	100.00	100.00	100.00	100.00	99.32	100.00	99.42	99.02	98.91	-0.11	0.990831	0.997790
K	cassette	SIRT7	chr17	-	chr17:79873558-79875490	chr17:79873558-79873933;chr17:79874016-79875490		chr17:79873934-79874015			1.41	1.27	2.78	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.33	4.76	0.00	0.00	0.00	NA	0.00	5.45	0.00	4.44	4.48	2.63	13.04	2.13	0.00	0.00	0.00	0.00	3.39	3.41	2.38	0.00	4.08	6.90	1.82	2.76	0.93	0.832538	0.944320
N	jcn_only_AD	FDPS	chr1	+	chr1:155288083-155289401	chr1:155288720-155289401					96.36	94.87	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.22	100.00	99.03	100.00	100.00	100.00	97.59	94.87	96.49	100.00	100.00	95.00	100.00	100.00	98.02	94.74	93.75	100.00	100.00	98.68	95.16	98.33	100.00	100.00	98.41	100.00	1.59	0.597607	0.801001
K	intron_retention		chr16	+	chr16:28846509-28846598				chr16:28846508-28846509;chr16:28846598-28846599		3.92	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	2.22	2.41	2.13	0.00	0.00	0.00	0.00	0.00	0.00	7.55	5.41	0.00	1.39	3.23	0.93	0.00	0.00	0.00	0.351362	1.000000
N	coord_cassette	GAS6	chr13	-	chr13:114531685-114537523	chr13:114531685-114535271;chr13:114535462-114535606;chr13:114535726-114537523		chr13:114535272-114535461;chr13:114535607-114535725			100.00	100.00	100.00	91.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	SEPT9	chr17	+	chr17:75489147-75493396;chr17:75489332-75493396;chr17:75492470-75493396	chr17:75489159-75493396		chr17:75489147-75489158;chr17:75489159-75489331;chr17:75489332-75492469	chr17:75489146-75489147;chr17:75489158-75489159;chr17:75489331-75489332		90.91	92.31	90.48	97.30	98.46	90.00	99.44	100.00	100.00	99.55	99.37	99.13	98.71	100.00	95.00	99.05	99.04	98.24	94.44	93.62	100.00	92.59	92.62	88.73	83.78	90.00	90.57	97.57	97.09	97.48	94.29	93.33	93.33	90.37	92.45	88.47	93.88	93.96	0.07	0.704632	0.873207
N	alternative_donor	CTC-454I21.3,ZNF585B	chr19	-	chr19:5913225-5917804	chr19:5913225-5914519		chr19:5914520-5917804	chr19:5917804-5917805		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	93.75	100.00	100.00	NA	100.00	94.44	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.791470	0.924933
N	alternative_acceptor	SORBS3	chr8	+	chr8:22429960-22432179	chr8:22429960-22430500		chr8:22430501-22432179	chr8:22432179-22432180		4.76	4.80	NA	4.35	3.70	5.88	1.12	0.00	0.00	0.00	0.00	0.00	1.28	2.33	2.22	0.00	0.00	0.00	4.65	4.55	4.00	3.23	2.30	3.33	6.19	4.35	NA	0.00	2.27	4.35	4.00	3.45	3.39	3.03	2.00	2.33	4.02	4.17	0.15	0.835320	0.940678
K	alternative_last_exon	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144890990-144892500;chr1:144886330-144892500	chr1:144892220-144892500	chr1:144886097-144886329	chr1:144890592-144892219			35.94	92.86	16.93	90.48	NA	92.86	20.51	19.49	12.88	19.10	19.44	20.99	17.39	22.83	14.57	20.00	17.65	13.04	78.95	28.05	73.17	38.46	34.88	17.80	54.55	17.35	21.51	47.22	52.94	54.17	57.45	28.85	91.30	29.49	21.82	18.40	66.75	25.44	-41.31	0.098347	0.315390
N	alternative_acceptor	RNF10	chr12	+	chr12:121013492-121013604;chr12:121013492-121013572	chr12:121013492-121013594		chr12:121013573-121013594;chr12:121013595-121013604	chr12:121013594-121013595;chr12:121013604-121013605		100.00	100.00	97.44	93.75	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	96.08	100.00	100.00	98.61	96.47	100.00	98.77	98.41	100.00	100.00	99.31	-0.69	0.147822	0.651394
N	alternative_acceptor	ADCY7	chr16	+	chr16:50339761-50340960	chr16:50339761-50340944		chr16:50340945-50340960	chr16:50340960-50340961		0.00	7.69	0.00	NA	0.00	0.00	1.16	0.00	0.00	NA	0.00	0.00	1.03	0.00	0.00	0.00	1.47	0.00	0.00	2.94	NA	NA	6.67	0.00	0.00	3.57	NA	NA	4.17	0.00	NA	NA	0.00	0.00	0.00	2.86	0.52	0.00	-0.52	0.820055	0.938511
K	intron_retention	PRPSAP1	chr17	-	chr17:74324944-74326123				chr17:74324943-74324944;chr17:74326123-74326124		6.67	0.00	13.11	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.03	0.00	6.25	0.00	0.00	NA	NA	0.00	4.00	NA	4.76	NA	NA	5.56	8.57	NA	6.25	NA	NA	8.11	0.00	0.00	9.09	8.33	0.00	0.00	0.00	0.789551	1.000000
K	coord_cassette	CADM1	chr11	-	chr11:115049496-115080293	chr11:115049496-115061607;chr11:115061662-115069125;chr11:115069159-115080293		chr11:115061608-115061661;chr11:115069126-115069158			0.00	0.00	NA	NA	0.00	0.00	2.70	0.00	2.50	4.00	0.00	7.69	5.88	0.00	0.00	5.26	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	10.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.209480	0.643829
N	alternative_last_exon	SCAF11	chr12	-	chr12:46353998-46355482,chr12:46345472-46355482,chr12:46347641-46355482;chr12:46349976-46355482;chr12:46328289-46355482;chr12:46355106-46355482	chr12:46345511-46355482	chr12:46348517-46349975;chr12:46328230-46328288;chr12:46354238-46355105	chr12:46345433-46345510			33.33	18.75	58.33	NA	NA	NA	90.00	83.33	79.17	63.64	76.19	60.00	90.00	82.76	69.57	60.00	66.67	52.94	NA	37.50	NA	28.57	21.43	46.15	0.00	41.67	57.14	18.18	16.67	20.00	9.09	28.57	NA	44.44	47.83	57.89	54.38	39.59	-14.79	0.950347	0.972989
K	jcn_only_AA	ATP5F1,HAX1	chr1	+	chr1:154247478-154247629	chr1:154247478-154247553		chr1:154247554-154247629	chr1:154247629-154247630		4.82	4.60	4.26	0.00	3.37	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	1.03	0.00	1.61	0.00	5.77	8.33	6.84	8.51	3.12	5.26	0.00	5.33	3.12	5.00	1.43	5.08	10.34	7.34	6.67	4.76	3.90	3.12	2.30	5.08	2.78	0.386523	0.663989
K	jcn_only_AA	STRN4	chr19	-	chr19:47230825-47231150;chr19:47230804-47231150	chr19:47230949-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	2.86	0.00	0.00	4.00	2.17	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	5.88	0.00	9.68	8.00	0.00	0.00	0.00	8.33	4.17	NA	4.55	5.00	0.00	0.00	0.00	0.00	0.262709	0.663989
N	cassette	TMEM14C	chr6	+	chr6:10723475-10726139;chr6:10723475-10728872	chr6:10723475-10725193;chr6:10725271-10726139,chr6:10725271-10728872		chr6:10725194-10725270			80.00	100.00	77.14	90.91	92.31	NA	100.00	100.00	100.00	100.00	93.10	96.15	92.94	100.00	100.00	93.10	97.06	100.00	100.00	89.47	81.82	96.00	92.73	96.77	NA	100.00	89.66	100.00	88.64	95.65	94.12	79.41	100.00	94.87	94.74	100.00	100.00	97.06	-2.94	0.236061	0.709176
K	alternative_last_exon	OAS1	chr12	+	chr12:113355506-113356401;chr12:113355506-113369682	chr12:113355506-113357291,chr12:113355506-113357193	chr12:113369683-113371027	chr12:113357292-113357680			91.74	96.26	91.53	100.00	100.00	99.52	68.18	65.91	58.09	56.00	NA	73.02	87.36	93.76	92.70	86.81	86.67	90.21	100.00	88.87	89.23	92.31	90.91	87.92	100.00	93.94	90.91	92.89	93.55	94.96	75.29	69.10	92.59	65.38	NA	67.32	94.43	90.31	-4.12	0.414957	0.571718
N	jcn_only_AA	MPP5,SIVA1	chr14	+	chr14:105223098-105225770;chr14:105223098-105225764	chr14:105223098-105225555		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	4.17	0.00	0.00	0.00	1.04	0.00	2.41	0.00	0.00	0.00	0.00	0.00	3.61	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	NPL	chr1	+	chr1:182758941-182761366				chr1:182758940-182758941;chr1:182761366-182761367		16.67	27.27	28.12	NA	23.53	NA	18.71	18.60	21.43	14.14	13.68	15.79	14.79	22.45	25.00	11.59	16.99	11.90	26.67	20.00	13.33	14.29	20.49	15.38	58.33	20.59	27.50	14.81	17.98	13.04	25.00	20.00	18.18	16.36	16.67	13.33	22.69	20.30	-2.39	0.700506	1.000000
N	jcn_only_AA	METTL17	chr14	+	chr14:21464871-21464970;chr14:21464871-21464943	chr14:21464871-21464928		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		0.00	0.00	0.00	11.76	0.00	0.00	NA	NA	NA	NA	9.09	NA	0.00	NA	NA	NA	NA	NA	4.71	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.94	5.81	0.00	0.00	0.00	0.00	0.00	0.00	0.180905	0.663989
K	intron_retention		chr16	+	chr16:29000911-29001094				chr16:29000910-29000911;chr16:29001094-29001095		2.83	1.92	2.33	5.13	3.51	4.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	1.49	1.52	7.41	6.98	0.00	0.00	0.00	3.85	0.00	0.00	6.67	6.21	2.86	6.56	5.41	10.71	4.35	0.00	1.49	1.49	0.998988	1.000000
N	coord_cassette	RMDN1	chr8	-	chr8:87492562-87519223	chr8:87492562-87497100;chr8:87497191-87498712;chr8:87498873-87500780;chr8:87500869-87519223		chr8:87497101-87497190;chr8:87498713-87498872;chr8:87500781-87500868			91.67	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	0.00	0.373901	0.643829
K	intron_retention	CTNNB1	chr3	+	chr3:41280846-41281309				chr3:41280845-41280846;chr3:41281309-41281310		81.17	71.11	77.20	51.28	58.80	52.99	48.57	60.78	68.54	52.23	48.92	48.88	55.74	60.00	73.68	52.21	53.33	55.22	68.24	76.69	71.96	60.43	56.67	58.80	79.07	62.84	68.00	42.67	43.29	44.44	79.67	76.00	70.00	57.39	61.86	62.95	69.12	69.77	0.64	0.445733	1.000000
N	cassette	TP53I13	chr17	+	chr17:27896378-27898874	chr17:27896378-27898608;chr17:27898738-27898874		chr17:27898609-27898737			95.83	100.00	86.96	NA	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	92.86	100.00	100.00	NA	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.728684	0.905593
K	jcn_only_AD	C17orf62	chr17	-	chr17:80405498-80407045;chr17:80405498-80405726	chr17:80405498-80407049					0.00	3.39	1.08	NA	0.00	NA	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.64	2.19	0.00	3.17	0.00	0.00	1.49	0.00	NA	0.00	0.00	0.00	0.00	0.78	0.00	4.35	0.00	0.00	2.70	0.00	0.00	5.71	1.61	0.00	0.32	0.32	0.884831	0.942747
N	alternative_donor	UBALD2	chr17	+	chr17:74261620-74261987;chr17:74261485-74261987	chr17:74261707-74261987		chr17:74261485-74261619;chr17:74261620-74261706	chr17:74261484-74261485;chr17:74261619-74261620		97.67	85.71	96.15	100.00	100.00	87.50	100.00	100.00	93.55	93.75	95.00	91.89	92.86	97.37	95.45	93.33	100.00	97.44	85.71	92.86	96.67	100.00	96.15	88.24	NA	100.00	100.00	100.00	96.43	91.30	92.31	100.00	88.24	100.00	100.00	100.00	88.24	97.52	9.28	0.087499	0.475124
K	intron_retention	EIF3G	chr19	-	chr19:10227666-10227759				chr19:10227665-10227666;chr19:10227759-10227760		2.65	3.05	2.22	0.82	5.37	0.94	4.64	0.00	0.00	0.64	9.70	0.00	2.61	4.35	0.00	0.98	4.74	0.00	1.20	1.19	1.44	1.35	6.96	2.74	3.70	2.30	0.56	0.78	4.90	1.64	3.70	1.47	0.47	1.23	3.97	1.80	2.83	2.47	-0.36	0.987105	1.000000
N	jcn_only_AD	SLC25A28	chr10	-	chr10:101373682-101375209;chr10:101373682-101378795;chr10:101373682-101378998;chr10:101373682-101379801;chr10:101373682-101379483	chr10:101373682-101380289		chr10:101375210-101378795;chr10:101378796-101378998;chr10:101378999-101379483;chr10:101379484-101379801;chr10:101379802-101380289	chr10:101378795-101378796;chr10:101378998-101378999;chr10:101379483-101379484;chr10:101379801-101379802;chr10:101380289-101380290		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.12	6.25	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	2.22	1.27	NA	0.00	0.00	0.65	0.00	0.00	0.00	0.182185	0.657607
N	alternative_donor	GLTSCR2	chr19	+	chr19:48259604-48259784;chr19:48259245-48259784;chr19:48259263-48259784	chr19:48259080-48259784		chr19:48259080-48259244;chr19:48259245-48259262;chr19:48259263-48259603	chr19:48259079-48259080;chr19:48259244-48259245;chr19:48259262-48259263		97.06	98.60	98.56	98.10	99.05	98.79	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.33	98.95	100.00	98.74	96.88	98.31	95.90	97.86	96.49	99.40	100.00	99.12	98.23	98.90	96.94	91.45	97.39	98.69	97.16	95.83	97.57	99.07	98.53	-0.54	0.279221	0.648887
N	jcn_only_AD		chr1	-	chr1:89575950-89578142;chr1:89575950-89578175	chr1:89575950-89578154		chr1:89578143-89578154;chr1:89578155-89578175	chr1:89578154-89578155;chr1:89578175-89578176		99.15	100.00	98.94	98.18	98.53	98.66	97.37	97.04	97.57	95.79	96.72	96.13	96.92	96.92	96.06	96.14	95.83	96.59	94.12	97.19	97.18	98.45	96.39	98.07	100.00	97.40	98.21	97.64	100.00	97.72	98.20	98.81	100.00	97.04	100.00	97.84	98.69	97.30	-1.39	0.700282	0.845069
N	intron_retention		chr19	.	chr19:49468867-49469537				chr19:49468866-49468867;chr19:49469537-49469538		97.59	100.00	95.24	93.33	92.54	100.00	NA	81.82	NA	NA	84.21	NA	NA	100.00	NA	64.29	75.00	NA	93.10	95.88	90.70	93.10	94.83	90.62	76.00	94.90	100.00	96.23	96.43	91.11	97.72	96.24	94.12	96.18	100.00	93.67	93.61	96.73	3.12	0.555585	1.000000
K	alternative_first_exon	TSPAN4	chr11	+	chr11:842916-850287;chr11:847301-850287	chr11:844187-850287	chr11:842808-842915;chr11:847170-847300	chr11:844081-844186			19.35	7.38	10.77	0.00	7.37	4.55	2.07	2.78	3.64	3.68	1.62	2.68	2.02	4.00	5.71	1.35	1.72	1.52	6.25	14.29	5.36	6.35	6.25	7.06	3.28	10.53	9.46	4.71	4.61	3.66	4.35	8.93	8.57	7.22	6.62	4.76	4.76	7.44	2.67	0.192169	0.394686
N	cassette	MPV17	chr2	-	chr2:27532850-27535546;chr2:27535115-27535546	chr2:27535115-27535360,chr2:27532850-27535360;chr2:27535457-27535546		chr2:27535361-27535456			95.00	89.47	97.62	NA	95.65	NA	100.00	96.88	100.00	98.75	99.10	97.33	100.00	100.00	100.00	98.75	100.00	100.00	90.91	88.89	97.06	91.30	92.16	96.30	NA	100.00	98.00	100.00	100.00	96.43	90.91	93.94	83.33	95.00	97.87	95.35	90.91	95.94	5.03	0.520234	0.796844
K	intron_retention		chr3	+	chr3:52555968-52556052				chr3:52555967-52555968;chr3:52556052-52556053		3.75	5.31	7.14	0.00	5.38	0.00	0.90	0.00	0.00	0.00	1.73	0.00	2.44	0.00	0.00	0.20	2.20	0.00	7.27	3.63	6.12	1.05	7.12	0.83	7.09	1.89	5.43	1.16	4.82	0.00	0.00	3.51	9.39	1.06	4.81	0.39	6.20	0.94	-5.25	0.076790	1.000000
K	intron_retention	STXBP2	chr19	+	chr19:7707935-7709499				chr19:7707934-7707935;chr19:7709499-7709500		37.93	36.73	46.51	54.55	47.62	36.36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	41.67	37.50	39.13	35.29	31.25	37.50	63.41	39.13	42.86	NA	38.46	NA	50.00	34.69	35.48	44.44	37.93	44.83	39.20	38.53	-0.67	0.768798	1.000000
K	intron_retention	EPHB2	chr1	+	chr1:23240058-23240150				chr1:23240057-23240058;chr1:23240150-23240151		95.18	100.00	100.00	NA	100.00	NA	100.00	90.00	88.89	100.00	96.88	100.00	93.44	94.03	91.67	93.33	97.41	92.59	100.00	100.00	100.00	100.00	96.49	100.00	100.00	96.55	100.00	100.00	94.59	100.00	90.00	100.00	100.00	100.00	97.50	96.00	100.00	94.61	-5.39	0.077857	1.000000
K	cassette	WBSCR22	chr7	+	chr7:73108381-73111934	chr7:73108381-73111795;chr7:73111847-73111934		chr7:73111796-73111846			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	1.43	0.95	1.28	1.90	0.00	1.43	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.534583	0.809056
K	jcn_only_AA	SCN1B	chr19	+	chr19:35523599-35524615	chr19:35523599-35524402		chr19:35524403-35524615	chr19:35524615-35524616		87.00	90.91	89.88	86.21	100.00	100.00	100.00	93.94	93.90	91.11	100.00	100.00	92.11	92.86	87.76	91.67	100.00	96.36	73.33	92.68	90.00	88.00	90.24	92.31	100.00	89.53	90.51	92.31	86.96	94.59	92.19	93.08	90.91	100.00	90.24	91.84	91.51	92.44	0.93	0.970953	0.989156
K	intron_retention	ARG2	chr14	+	chr14:68114901-68117431				chr14:68114900-68114901;chr14:68117431-68117432		47.62	55.56	33.33	NA	70.00	NA	83.33	50.00	71.43	86.96	85.71	87.50	58.70	20.00	60.00	76.47	83.78	91.67	57.14	25.00	27.27	70.00	68.18	90.00	71.43	33.33	27.27	NA	89.47	NA	NA	35.48	31.82	80.00	77.78	75.00	57.92	33.33	-24.59	0.143123	1.000000
K	cassette	FDXR	chr17	-	chr17:72862367-72862905	chr17:72862367-72862567;chr17:72862691-72862905		chr17:72862568-72862690			86.67	95.45	87.50	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	84.21	93.33	NA	100.00	NA	75.00	100.00	90.91	NA	NA	NA	83.33	93.85	87.23	100.00	100.00	NA	97.72	85.44	-12.28	0.460930	0.758088
N	alternative_acceptor		chr14	+	chr14:103600141-103600264;chr14:103600141-103601560;chr14:103600141-103600292;chr14:103600141-103602145	chr14:103600141-103601555		chr14:103600265-103600292;chr14:103600293-103601555;chr14:103601556-103601560;chr14:103601561-103602145	chr14:103600292-103600293;chr14:103601555-103601556;chr14:103601560-103601561;chr14:103602145-103602146		97.74	98.06	97.00	97.22	100.00	93.75	100.00	98.82	99.06	99.86	100.00	99.39	99.35	99.39	98.68	99.10	98.30	99.19	100.00	96.74	97.59	98.08	98.16	97.61	93.94	96.96	97.51	97.51	97.78	98.43	96.71	96.49	93.75	97.64	97.80	97.62	98.70	97.35	-1.36	0.875144	0.956456
K	intron_retention	RPL10	chrX	+	chrX:153628283-153628804				chrX:153628282-153628283;chrX:153628804-153628805		5.00	1.77	5.10	2.50	2.01	1.79	0.30	1.66	0.64	0.59	0.52	0.33	0.52	1.44	2.12	0.83	0.72	0.24	1.71	8.57	2.50	6.57	3.92	6.34	1.21	9.59	3.95	3.08	2.73	2.94	12.67	8.01	1.91	3.45	3.83	3.01	1.46	6.79	5.33	0.095591	1.000000
K	cassette	MVD	chr16	-	chr16:88725129-88729418	chr16:88725129-88726927;chr16:88727046-88729418		chr16:88726928-88727045			2.22	0.00	2.99	0.00	0.00	NA	1.92	4.35	4.00	5.56	1.79	5.26	3.33	2.86	3.28	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	2.04	0.00	1.96	0.00	5.00	0.00	4.17	2.22	0.00	0.00	0.96	3.28	2.32	0.198427	0.709176
N	jcn_only_AD	E4F1	chr16	+	chr16:2284990-2285081;chr16:2284973-2285081;chr16:2284966-2285081;chr16:2284951-2285081	chr16:2285003-2285081		chr16:2284951-2284965;chr16:2284966-2284972;chr16:2284973-2284989;chr16:2284990-2285002	chr16:2284950-2284951;chr16:2284965-2284966;chr16:2284972-2284973;chr16:2284989-2284990		92.59	98.28	100.00	83.33	97.92	96.43	100.00	NA	83.33	100.00	100.00	NA	100.00	NA	93.75	95.83	87.50	NA	100.00	100.00	94.29	100.00	100.00	94.74	100.00	87.50	93.33	100.00	96.88	96.00	94.12	92.31	94.74	100.00	100.00	97.50	100.00	93.36	-6.64	0.129426	0.657607
K	cassette	TTC7A	chr2	+	chr2:47238575-47250546	chr2:47238575-47249000;chr2:47249119-47250546		chr2:47249001-47249118			90.91	77.42	80.00	NA	81.82	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	95.24	NA	NA	82.93	NA	100.00	100.00	NA	NA	93.75	NA	92.86	90.91	90.00	NA	82.35	NA	100.00	97.62	-2.38	0.553245	0.820483
K	alternative_donor	FDXR	chr17	-	chr17:72868259-72868893;chr17:72868259-72868367	chr17:72868259-72868990		chr17:72868368-72868893;chr17:72868894-72868990	chr17:72868893-72868894;chr17:72868990-72868991		100.00	78.79	84.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.31	NA	NA	NA	86.67	90.91	93.33	NA	NA	NA	41.18	93.75	94.29	NA	NA	NA	95.24	88.06	85.71	92.31	92.31	NA	86.19	94.50	8.31	0.209103	0.581601
K	alternative_acceptor	CRTC2	chr1	-	chr1:153925112-153925280	chr1:153925127-153925280		chr1:153925112-153925126	chr1:153925111-153925112		14.75	12.00	16.91	NA	NA	NA	16.67	13.51	8.51	8.00	3.45	5.88	11.54	14.71	13.11	4.88	6.90	5.88	NA	19.44	10.00	11.76	15.15	14.29	38.89	11.48	15.73	25.00	27.78	7.69	27.78	18.97	10.00	22.58	8.33	16.67	12.00	14.73	2.73	0.887325	0.961297
N	intron_retention		chr22	-	chr22:50965713-50968332				chr22:50965712-50965713;chr22:50968332-50968333		95.32	90.14	92.64	89.81	88.89	84.38	100.00	98.48	97.37	100.00	100.00	100.00	100.00	100.00	98.54	97.98	100.00	100.00	85.92	95.67	93.33	95.06	90.10	97.09	84.13	97.52	96.84	97.95	93.33	96.55	94.84	96.52	86.42	93.10	91.14	95.53	88.28	96.59	8.31	0.153912	1.000000
K	intron_retention		chr18	-	chr18:5394793-5395065				chr18:5394792-5394793;chr18:5395065-5395066		5.41	0.00	8.47	0.00	0.00	2.63	1.40	1.92	2.53	1.41	1.83	1.20	3.11	1.72	4.88	2.17	1.89	1.80	0.00	4.87	4.17	3.25	2.51	8.33	0.00	4.86	6.79	4.00	2.63	1.96	5.56	6.05	6.25	7.03	7.75	6.46	0.70	4.87	4.17	0.434988	1.000000
K	alternative_acceptor	NIT1	chr1	+	chr1:161089179-161089298	chr1:161089179-161089282		chr1:161089283-161089298	chr1:161089298-161089299		11.11	0.00	9.09	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	NA	0.00	0.00	NA	8.00	9.09	NA	8.70	9.09	NA	0.00	8.00	7.69	8.70	4.76	13.33	9.68	0.00	6.67	9.52	9.68	0.00	5.43	5.43	0.054226	0.570243
N	alternative_donor	RBCK1	chr20	+	chr20:408137-409134	chr20:408703-409134		chr20:408137-408702	chr20:408136-408137		0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	1.64	0.00	0.00	0.00	2.56	0.00	0.78	0.00	0.00	0.00	1.37	0.00	1.26	1.56	2.04	0.00	0.82	1.04	0.00	0.00	5.26	0.00	3.01	0.00	0.91	0.91	0.035000	0.349791
N	cassette	SMARCD2	chr17	-	chr17:61914405-61914800	chr17:61914405-61914554;chr17:61914598-61914800		chr17:61914555-61914597			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	97.50	NA	95.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	MRAS	chr3	+	chr3:138117415-138119375;chr3:138118639-138119375	chr3:138117411-138119375		chr3:138117411-138117414;chr3:138117415-138118638	chr3:138117410-138117411;chr3:138117414-138117415		100.00	NA	94.12	NA	92.86	NA	96.55	95.74	96.83	93.69	96.92	95.95	97.14	96.49	100.00	97.03	96.80	96.36	100.00	97.62	96.77	100.00	98.18	95.59	NA	93.88	92.86	96.43	96.55	96.55	97.83	100.00	100.00	95.45	97.47	98.65	98.57	97.06	-1.51	0.269806	0.645499
N	alternative_donor	MTCH1	chr6	-	chr6:36938471-36939657;chr6:36938471-36940478	chr6:36938471-36940427		chr6:36939658-36940427;chr6:36940428-36940478	chr6:36940427-36940428;chr6:36940478-36940479		28.93	28.80	31.37	35.71	41.67	28.57	32.06	31.50	35.66	28.40	25.00	25.53	29.27	27.02	32.56	24.18	28.04	22.89	25.64	27.57	33.33	26.19	37.06	23.61	45.83	28.35	36.11	30.94	39.86	28.40	27.27	28.04	32.73	29.15	34.76	28.12	30.66	27.96	-2.70	0.234315	0.605820
K	intron_retention		chr11	+	chr11:117066632-117066719				chr11:117066631-117066632;chr11:117066719-117066720		15.79	48.57	35.71	NA	73.33	NA	0.00	0.00	3.85	0.00	3.45	0.00	2.63	1.67	16.67	NA	0.00	NA	83.33	4.55	75.00	NA	33.33	NA	84.62	8.51	40.00	NA	38.46	NA	23.53	40.00	76.19	NA	28.57	20.00	62.38	6.53	-55.85	0.109005	1.000000
N	cassette	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6919845-6920579;chr17:6920005-6920579;chr17:6919845-6920575;chr17:6920005-6920575	chr17:6919845-6920228,chr17:6920005-6920228;chr17:6920334-6920575,chr17:6920334-6920579		chr17:6920229-6920333			74.51	81.23	75.37	74.10	77.65	75.74	93.24	91.78	90.71	83.33	94.32	88.89	97.50	91.78	86.75	89.74	87.95	92.73	84.38	84.40	83.19	72.37	82.69	84.81	92.65	89.81	84.14	87.93	87.50	88.15	81.29	82.07	78.25	79.59	82.09	84.83	88.52	87.11	-1.41	0.599639	0.849488
K	alternative_first_exon	THAP4	chr2	-	chr2:242545889-242572331	chr2:242545889-242556826	chr2:242572332-242573494	chr2:242556827-242556916			0.00	2.56	0.00	7.69	0.00	NA	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	11.11	0.00	0.00	0.00	0.00	7.69	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.41	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.549763	0.676693
N	cassette	PTK2B	chr8	+	chr8:27308413-27309001	chr8:27308413-27308559;chr8:27308596-27309001		chr8:27308560-27308595			75.65	100.00	68.06	NA	66.67	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	71.43	82.42	80.00	100.00	76.92	100.00	NA	95.40	95.45	100.00	100.00	94.34	94.12	96.92	NA	97.06	100.00	93.42	100.00	94.76	-5.24	0.854182	0.950471
N	alternative_donor	ARHGEF10L	chr1	+	chr1:17965828-17966696;chr1:17966477-17966696;chr1:17965809-17966696	chr1:17965185-17966696		chr1:17965185-17965808;chr1:17965809-17965827;chr1:17965828-17966476	chr1:17965184-17965185;chr1:17965808-17965809;chr1:17965827-17965828		92.95	92.31	94.55	94.74	96.55	100.00	100.00	98.01	97.75	99.33	99.01	98.73	98.48	98.04	98.33	97.92	99.23	98.33	100.00	94.87	95.45	96.08	97.70	94.95	NA	90.61	94.19	92.63	96.88	94.21	97.14	95.92	100.00	95.00	96.47	93.71	100.00	96.00	-4.00	0.173268	0.563271
N	jcn_only_AA	JDP2	chr14	+	chr14:75904825-75911792;chr14:75904825-75928128	chr14:75904825-75928132		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		0.00	0.00	0.99	0.00	4.00	0.00	1.92	1.11	1.23	0.00	1.14	1.21	0.00	1.75	0.00	0.00	2.24	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	2.38	0.00	1.41	0.00	1.92	3.28	2.33	0.00	0.56	0.56	0.774582	0.900244
K	intron_retention	MBD1	chr18	-	chr18:47799109-47799193				chr18:47799108-47799109;chr18:47799193-47799194		4.88	0.00	9.80	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.88	4.76	10.00	2.22	6.25	NA	0.00	4.17	0.00	0.00	0.00	3.23	5.26	4.76	2.70	2.56	1.89	0.00	1.61	1.61	0.903773	1.000000
N	jcn_only_AA	CUL1,TTYH3	chr7	+	chr7:2671913-2685405;chr7:2671913-2686486	chr7:2671913-2673737		chr7:2673738-2685405;chr7:2685406-2686486	chr7:2685405-2685406;chr7:2686486-2686487		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	0.00	0.00	0.52	1.02	NA	0.00	NA	0.00	1.27	0.00	NA	0.00	0.00	1.72	2.74	0.00	6.67	0.00	15.38	0.00	0.00	0.00	0.21	0.00	-0.21	0.519218	0.760908
K	jcn_only_AA	ZFAND2A	chr7	-	chr7:1192768-1195088;chr7:1192861-1195088	chr7:1192878-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		5.08	0.00	0.00	1.98	2.35	2.94	7.14	0.00	3.92	0.00	0.00	3.33	0.00	0.00	0.00	2.50	0.00	0.00	1.75	5.00	1.69	3.45	4.65	0.00	9.33	1.64	0.00	3.85	0.00	1.12	1.12	5.00	3.26	2.53	0.00	2.53	2.50	1.38	-1.12	0.456936	0.719945
K	intron_retention	STUB1	chr16	+	chr16:731881-732019				chr16:731880-731881;chr16:732019-732020		28.17	44.11	26.25	45.95	46.46	53.54	31.34	17.65	24.14	35.71	37.07	37.50	30.51	20.69	18.03	30.84	32.54	41.86	38.60	25.00	29.44	40.00	31.17	33.33	43.57	17.02	22.47	35.19	32.23	35.71	28.95	22.12	34.58	26.74	29.13	36.84	36.59	22.84	-13.75	0.023486	1.000000
K	intron_retention		chr5	-	chr5:134688736-134696186				chr5:134688735-134688736;chr5:134696186-134696187		4.17	5.00	8.16	0.00	3.64	NA	1.98	1.67	1.67	0.46	1.90	0.00	4.29	0.00	5.71	3.55	2.74	0.00	0.00	4.41	0.00	1.56	9.15	3.17	NA	7.69	5.71	6.85	7.62	3.33	4.17	3.57	0.00	9.38	12.59	5.21	1.98	4.17	2.19	0.461295	1.000000
K	intron_retention		chr7	+	chr7:128587590-128587782				chr7:128587589-128587590;chr7:128587782-128587783		4.84	0.00	23.08	NA	0.00	NA	0.00	0.77	0.00	0.00	0.73	0.00	2.38	1.49	0.00	0.51	0.00	0.00	9.52	5.59	0.00	7.97	8.63	7.47	0.00	4.17	0.00	5.62	6.00	2.73	6.33	7.89	7.14	4.00	5.56	4.85	1.19	4.50	3.31	0.910386	1.000000
N	alternative_acceptor	TGOLN2	chr2	-	chr2:85549856-85552037;chr2:85549865-85552037;chr2:85545847-85552037	chr2:85549794-85552037		chr2:85545847-85549793;chr2:85549794-85549855;chr2:85549856-85549864	chr2:85545846-85545847;chr2:85549793-85549794;chr2:85549855-85549856		1.43	1.43	0.84	0.00	1.89	0.00	0.34	1.03	3.12	2.42	2.18	2.59	1.68	5.13	2.65	2.96	1.83	0.68	0.00	1.77	2.44	3.03	6.41	6.93	0.00	1.28	4.35	3.28	1.72	1.79	3.64	1.83	0.00	1.33	1.18	4.19	0.17	1.60	1.43	0.044364	0.570243
N	alternative_last_exon	CORO1B	chr11	-	chr11:67209560-67209898;chr11:67207911-67209898	chr11:67205973-67209898	chr11:67209437-67209559;chr11:67207806-67207910	chr11:67205519-67205972			0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.11	1.18	14.89	1.45	0.00	0.00	0.00	0.00	0.00	0.358748	0.535374
N	alternative_acceptor	RHOQ	chr2	+	chr2:46803796-46808066;chr2:46803796-46808070;chr2:46803796-46807695;chr2:46803796-46827732;chr2:46803796-46803887	chr2:46803796-46807747		chr2:46803888-46807695;chr2:46807696-46807747;chr2:46807748-46808066;chr2:46808067-46808070;chr2:46808071-46827732	chr2:46807695-46807696;chr2:46807747-46807748;chr2:46808066-46808067;chr2:46808070-46808071;chr2:46827732-46827733		0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.178349	0.660713
N	coord_cassette	PSPC1	chr13	-	chr13:20251964-20304378	chr13:20251964-20279801;chr13:20279972-20283681;chr13:20283740-20304378		chr13:20279802-20279971;chr13:20283682-20283739			15.38	0.00	16.67	19.05	30.77	16.00	42.86	33.33	14.29	88.89	84.85	85.00	58.33	28.57	20.00	55.56	86.36	85.19	0.00	7.69	9.52	47.06	50.00	55.00	NA	4.17	13.33	45.83	57.69	43.75	5.88	4.76	5.56	35.71	50.00	31.25	5.56	11.54	5.98	0.693188	0.842289
K	intron_retention	OS9	chr12	+	chr12:58112966-58113881				chr12:58112965-58112966;chr12:58113881-58113882		4.93	6.13	7.14	4.40	1.99	2.73	0.67	0.30	0.63	0.00	0.00	0.45	0.35	0.64	0.69	1.23	0.44	0.65	2.70	4.00	2.41	6.25	3.97	9.71	2.05	2.69	4.83	3.57	3.55	3.37	2.94	6.69	3.25	6.38	5.56	7.18	2.38	2.81	0.44	0.719675	1.000000
N	alternative_acceptor	PARVG	chr22	+	chr22:44587985-44589680;chr22:44587985-44588837;chr22:44587985-44589685	chr22:44587985-44588976		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.87	0.00	0.00	NA	0.00	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	5.88	2.38	0.00	1.09	0.00	0.00	3.23	0.00	3.12	1.49	0.00	0.00	0.00	0.00	0.725978	0.897799
N	jcn_only_AA	CD22	chr19	+	chr19:50339203-50339488	chr19:50339203-50339482		chr19:50339483-50339488	chr19:50339488-50339489		98.91	98.98	100.00	100.00	98.36	97.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.95	100.00	100.00	100.00	100.00	100.00	98.75	98.50	NA	100.00	100.00	94.92	97.00	100.00	100.00	100.00	100.00	100.00	96.61	97.01	100.00	100.00	100.00	99.49	98.93	-0.56	0.654856	0.846812
K	cassette	TEX264	chr3	+	chr3:51708579-51718428	chr3:51708579-51715357;chr3:51715447-51718428		chr3:51715358-51715446			0.00	1.89	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	NA	6.25	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.217360	0.709176
K	jcn_only_AA	DGUOK,HNMT	chr2	+	chr2:138759765-138762701	chr2:138759765-138759853		chr2:138759854-138762701	chr2:138762701-138762702		10.00	0.00	14.29	NA	NA	NA	4.57	11.44	8.33	5.41	8.86	15.79	4.66	11.29	8.82	7.35	9.09	14.29	NA	11.11	13.33	15.38	17.65	6.67	38.46	16.22	13.25	6.25	9.09	0.00	15.15	17.54	NA	22.73	15.85	6.25	4.62	11.36	6.75	0.949761	0.982846
N	cassette	TNFRSF14	chr1	+	chr1:2492154-2494303	chr1:2492154-2493215;chr1:2493255-2494303		chr1:2493216-2493254			87.50	95.40	85.71	95.89	94.23	98.55	100.00	100.00	95.92	100.00	97.96	100.00	98.00	96.97	95.45	100.00	100.00	94.12	97.47	96.67	95.59	94.55	94.55	96.08	100.00	97.06	96.43	98.63	97.06	97.30	100.00	94.64	87.84	92.75	94.44	96.63	97.73	97.02	-0.72	0.974993	0.995110
K	cassette	TAPBP	chr6	-	chr6:33281255-33281781	chr6:33281255-33281470;chr6:33281642-33281781		chr6:33281471-33281641			98.00	100.00	98.99	NA	NA	NA	100.00	100.00	100.00	97.44	97.18	95.88	98.90	100.00	100.00	97.37	97.01	97.22	NA	95.92	95.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	95.83	100.00	100.00	98.61	NA	95.83	100.00	100.00	100.00	100.00	0.00	0.358886	0.709176
N	jcn_only_AA	ABCC3,TAOK1	chr17	+	chr17:48755581-48756713;chr17:48755581-48756716;chr17:48755581-48757158;chr17:48755581-48757145	chr17:48755581-48755877		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		0.00	0.00	2.94	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	12.50	0.00	0.00	0.00	0.00	NA	0.00	4.29	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AA	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2796520-2799278	chr18:2796520-2800520		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		8.70	0.00	3.57	NA	0.00	NA	9.52	16.22	13.33	14.29	5.88	17.86	9.52	9.84	14.63	14.29	0.00	14.81	NA	9.88	NA	0.00	0.00	3.57	NA	10.00	3.70	5.26	0.00	3.57	4.26	7.46	0.00	5.00	0.00	7.69	4.76	9.86	5.10	0.171242	0.663989
N	jcn_only_AD	MLEC	chr12	+	chr12:121130932-121131893;chr12:121125335-121131893	chr12:121125512-121131893		chr12:121125335-121125511;chr12:121125512-121130931	chr12:121125334-121125335;chr12:121125511-121125512		0.00	0.00	0.00	NA	0.00	NA	5.56	0.00	0.00	0.00	4.26	0.00	4.71	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.176510	0.657607
N	alternative_acceptor	CH507-9B2.5,PWP2	chr21	+	chr21:48063552-48064222	chr21:48063552-48064217		chr21:48064218-48064222	chr21:48064222-48064223		95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	0.00	0.363217	0.709013
K	cassette	SARAF	chr8	-	chr8:29927576-29940362	chr8:29927576-29931392;chr8:29931545-29940362		chr8:29931393-29931544			88.80	85.71	82.29	NA	90.32	NA	86.50	93.06	83.89	87.29	85.98	91.27	85.15	90.00	83.62	86.67	79.14	88.10	NA	90.91	84.21	100.00	80.00	91.57	NA	90.29	84.17	88.57	83.54	88.89	91.84	82.35	90.00	87.25	85.94	88.33	86.10	90.60	4.50	0.025177	0.412736
N	alternative_acceptor	CPED1,TTYH3	chr7	+	chr7:2689623-2691820	chr7:2689623-2690830		chr7:2690831-2691820	chr7:2691820-2691821		2.25	12.00	3.97	NA	0.00	NA	0.21	0.44	0.00	0.00	0.15	0.00	0.15	0.56	1.56	0.30	0.16	0.00	7.69	2.17	0.00	1.14	2.15	1.05	5.56	3.70	3.90	0.80	1.74	0.00	3.51	2.78	7.69	4.17	2.13	1.95	6.62	2.21	-4.42	0.134188	0.630752
N	alternative_donor	KIAA0319L	chr1	-	chr1:35900683-35906647	chr1:35900683-35900905		chr1:35900906-35906647	chr1:35906647-35906648		7.69	15.38	7.27	NA	6.67	NA	0.00	4.00	1.49	NA	0.00	NA	4.00	2.44	4.00	8.33	5.56	NA	10.00	6.06	4.17	NA	7.41	NA	NA	10.87	7.69	NA	13.33	11.11	4.17	4.88	10.00	19.05	15.79	13.89	10.00	5.12	-4.88	0.522649	0.771603
N	jcn_only_AA	SPTLC2	chr14	-	chr14:77987925-78018438;chr14:77987959-78018438	chr14:78015225-78018438		chr14:77987925-77987958;chr14:77987959-78015224	chr14:77987924-77987925;chr14:77987958-77987959		0.00	10.53	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	jcn_only_AA	LMNA,RAB4A	chr1	+	chr1:229431658-229433266	chr1:229431658-229433228		chr1:229433229-229433266	chr1:229433266-229433267		68.18	75.00	92.31	NA	91.89	NA	93.98	88.89	88.89	93.88	96.63	90.91	91.94	93.75	88.00	95.35	93.06	NA	75.00	84.62	83.33	86.67	83.33	100.00	NA	68.75	91.18	80.00	92.45	NA	76.92	81.08	72.22	91.43	91.43	78.57	75.00	80.77	5.77	0.826062	0.929528
N	jcn_only_AA	PRR14	chr16	+	chr16:30666742-30666848;chr16:30666742-30666822	chr16:30666742-30666834		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		6.12	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	1.89	0.00	0.00	0.00	0.00	3.12	0.00	3.17	0.00	0.00	0.00	3.17	1.10	1.72	2.38	0.00	0.00	0.86	0.94	0.08	0.534188	0.773341
N	coord_cassette	NDUFC1	chr4	-	chr4:140217115-140223569	chr4:140217115-140217485;chr4:140217522-140218538;chr4:140218598-140223569		chr4:140217486-140217521;chr4:140218539-140218597			0.00	0.00	0.00	NA	NA	0.00	0.00	2.63	0.00	11.76	0.00	16.44	0.00	2.50	0.00	0.00	0.00	17.31	0.00	3.70	0.00	8.33	0.00	8.89	0.00	9.68	0.00	6.25	0.00	9.71	0.00	0.00	0.00	0.00	0.00	6.90	0.00	2.56	2.56	0.087374	0.643829
K	intron_retention		chr6	+	chr6:42987105-42988404				chr6:42987104-42987105;chr6:42988404-42988405		4.00	5.83	7.69	5.00	6.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	1.64	0.00	1.34	0.00	4.55	4.35	2.86	0.00	3.45	18.75	4.00	0.00	2.08	0.00	1.45	5.00	3.33	9.80	4.46	3.12	8.33	6.67	4.23	1.67	-2.57	0.951781	1.000000
K	jcn_only_AA	CHD4	chr12	-	chr12:6711321-6711541	chr12:6711342-6711541		chr12:6711321-6711341	chr12:6711320-6711321		58.33	56.25	49.09	NA	NA	NA	57.81	48.89	57.69	47.73	56.52	54.35	47.69	51.22	47.27	48.89	55.43	48.65	NA	50.00	NA	NA	62.50	64.29	69.23	52.38	58.82	NA	NA	NA	NA	54.55	NA	39.13	48.15	51.72	57.03	51.22	-5.81	0.305546	0.663989
K	cassette	NDUFA12	chr12	-	chr12:95365397-95396514	chr12:95365397-95387945;chr12:95388034-95396514		chr12:95387946-95388033			90.74	93.15	92.98	86.67	94.87	90.00	97.01	96.55	97.22	97.83	97.22	100.00	94.44	86.36	100.00	97.26	93.24	92.68	95.50	94.92	93.06	88.37	95.68	92.45	85.29	100.00	93.33	93.94	100.00	93.62	87.50	91.94	90.82	91.78	95.51	91.30	93.80	92.83	-0.97	0.993483	0.998132
K	alternative_acceptor	ARRDC1	chr9	+	chr9:140508222-140508432;chr9:140508222-140508483	chr9:140508222-140508591		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		6.06	4.92	10.00	NA	0.00	NA	0.00	10.71	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.25	0.00	12.50	NA	12.82	NA	0.00	0.00	12.00	NA	0.00	NA	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.683798	0.881289
K	intron_retention	GLMP	chr1	-	chr1:156263221-156263808				chr1:156263220-156263221;chr1:156263808-156263809		85.45	89.38	91.78	84.85	89.91	77.27	85.89	87.50	87.69	75.00	77.14	78.81	85.47	83.33	87.30	81.30	81.36	79.25	88.46	90.62	85.51	86.27	83.78	89.39	92.00	93.33	84.42	86.84	83.51	85.29	87.80	89.36	92.86	83.84	86.36	83.82	88.92	87.65	-1.27	0.889367	1.000000
N	alternative_donor	IGFLR1	chr19	-	chr19:36232125-36233296;chr19:36232125-36233167;chr19:36232125-36232383	chr19:36232125-36233290		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		7.84	3.52	8.22	4.35	5.60	4.00	5.19	12.50	6.45	2.94	7.02	10.00	4.60	5.00	10.26	6.06	5.80	0.00	5.42	5.66	2.38	4.62	3.96	2.74	3.37	0.00	7.06	5.56	5.92	5.41	2.82	5.61	4.48	6.17	6.90	3.19	4.54	5.33	0.79	0.527041	0.775000
K	cassette	TXNDC15	chr5	+	chr5:134210221-134229181	chr5:134210221-134223384;chr5:134223873-134229181		chr5:134223385-134223872			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.77	100.00	100.00	100.00	98.21	100.00	100.00	100.00	97.78	95.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	alternative_last_exon	SLIRP	chr14	+	chr14:78182223-78226995;chr14:78182223-78183844,chr14:78182223-78183838,chr14:78182223-78183822	chr14:78182223-78186858	chr14:78226996-78227447;chr14:78183845-78183937	chr14:78186859-78187450			7.41	0.95	13.64	1.82	3.45	1.00	9.09	33.33	11.90	6.25	5.45	10.26	7.27	19.05	10.53	5.71	6.58	4.35	0.80	20.00	1.20	6.25	7.14	13.33	0.00	20.00	12.50	6.06	7.69	5.88	11.76	10.81	0.86	12.82	9.80	15.22	0.91	19.52	18.62	0.006102	0.151324
K	intron_retention	CTD-3214H19.4,STXBP2	chr19	+	chr19:7707423-7707651				chr19:7707422-7707423;chr19:7707651-7707652		1.87	1.48	2.88	1.54	2.38	0.00	0.00	0.39	0.00	0.94	0.00	0.00	0.00	0.44	1.29	0.00	0.00	0.00	2.14	1.14	0.47	2.06	2.04	0.00	5.79	1.91	1.77	0.00	1.23	0.93	1.62	2.93	0.56	0.72	1.58	1.02	1.02	1.38	0.36	0.943137	1.000000
K	cassette	DNPEP	chr2	-	chr2:220249166-220250352	chr2:220249166-220250145;chr2:220250254-220250352		chr2:220250146-220250253			84.00	100.00	100.00	80.00	87.50	NA	100.00	95.24	96.97	100.00	100.00	90.48	100.00	100.00	100.00	96.92	95.83	100.00	NA	100.00	100.00	88.24	95.65	90.91	NA	95.00	93.33	95.65	88.24	89.66	100.00	91.67	100.00	95.45	94.44	91.11	100.00	97.62	-2.38	0.151349	0.709176
K	jcn_only_AD	MRPS11	chr15	+	chr15:89011256-89015857	chr15:89012377-89015857		chr15:89011256-89012376	chr15:89011255-89011256		0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.41	0.00	1.11	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	4.00	8.33	0.00	4.35	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_last_exon	PLIN2	chr9	-	chr9:19121164-19123562	chr9:19123475-19123562	chr9:19120878-19121163	chr9:19123233-19123474			1.12	0.00	0.00	24.00	4.35	63.64	1.06	0.00	0.00	3.92	1.42	5.77	0.00	0.00	0.00	7.55	0.75	8.16	14.29	0.35	2.47	1.87	0.89	6.25	0.00	0.00	0.00	2.78	1.10	6.25	1.35	0.84	6.90	2.35	1.14	6.12	0.53	0.17	-0.36	0.233357	0.449786
K	intron_retention		chr6	+	chr6:35277588-35278235				chr6:35277587-35277588;chr6:35278235-35278236		2.86	0.00	18.42	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	1.89	NA	NA	4.55	0.00	NA	0.00	NA	54.55	0.00	2.33	NA	0.00	NA	NA	NA	NA	9.09	4.00	0.00	0.00	0.00	0.00	0.688479	1.000000
K	intron_retention		chr20	-	chr20:3670350-3670608				chr20:3670349-3670350;chr20:3670608-3670609		17.00	24.56	25.00	NA	6.25	30.43	3.59	2.93	3.11	5.17	4.63	5.66	2.94	3.33	4.61	7.58	6.09	3.45	20.00	19.05	2.63	15.38	18.75	19.15	31.03	13.44	12.84	23.08	9.84	10.75	11.30	13.27	NA	25.58	25.93	20.73	20.00	12.37	-7.63	0.931071	1.000000
K	intron_retention	EHBP1L1	chr11	+	chr11:65351870-65351956				chr11:65351869-65351870;chr11:65351956-65351957		1.28	2.44	3.11	0.00	3.57	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	2.44	1.47	0.94	2.63	3.17	6.25	13.11	1.10	1.85	1.56	1.08	2.78	2.70	3.11	8.85	1.59	1.85	2.30	2.44	1.19	-1.25	0.295048	1.000000
N	alternative_donor	CHMP5	chr9	+	chr9:33265168-33266007;chr9:33265825-33266007;chr9:33265794-33266007	chr9:33265146-33266007		chr9:33265146-33265167;chr9:33265168-33265793;chr9:33265794-33265824	chr9:33265145-33265146;chr9:33265167-33265168;chr9:33265793-33265794		98.01	100.00	99.18	100.00	100.00	NA	100.00	92.64	97.57	100.00	100.00	93.70	100.00	93.19	95.44	99.25	100.00	92.25	NA	97.92	100.00	97.26	100.00	96.19	NA	95.95	99.00	97.47	100.00	95.24	98.15	99.31	100.00	97.62	98.85	95.40	100.00	96.94	-3.06	0.011134	0.225202
N	cassette	CUEDC2	chr10	-	chr10:104183617-104184020	chr10:104183617-104183752;chr10:104183936-104184020		chr10:104183753-104183935			100.00	100.00	100.00	100.00	97.67	94.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	100.00	97.44	92.86	100.00	100.00	100.00	100.00	100.00	100.00	98.08	100.00	98.17	100.00	98.44	100.00	100.00	100.00	0.00	0.675750	0.882035
K	intron_retention		chr5	+	chr5:138661352-138661851				chr5:138661351-138661352;chr5:138661851-138661852		10.45	5.26	7.84	3.45	1.89	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	8.93	3.45	3.37	5.49	6.45	NA	7.14	4.17	2.94	1.47	0.00	15.56	13.00	10.00	7.14	4.95	4.76	0.00	8.04	8.04	0.506736	1.000000
K	alternative_donor	FKBP8,SMIM7	chr19	-	chr19:16742536-16757930	chr19:16742536-16757906		chr19:16757907-16757930	chr19:16757930-16757931		81.82	100.00	70.59	NA	100.00	100.00	94.12	100.00	92.00	NA	81.82	NA	96.88	92.31	96.15	90.91	91.67	NA	100.00	83.33	100.00	80.00	68.75	NA	100.00	75.00	85.71	100.00	100.00	NA	83.33	66.67	100.00	84.62	94.74	89.47	100.00	83.33	-16.67	0.016226	0.261179
K	intron_retention	ZMIZ2	chr7	+	chr7:44797708-44798879				chr7:44797707-44797708;chr7:44798879-44798880		3.57	25.00	6.56	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00	0.00	53.85	9.52	58.82	9.09	10.00	8.00	0.00	5.77	5.56	0.00	0.00	NA	33.33	22.22	NA	21.88	9.43	15.22	0.00	4.67	4.67	0.787463	1.000000
N	alternative_acceptor	CD47	chr3	-	chr3:107776381-107777183	chr3:107776417-107777183		chr3:107776381-107776416	chr3:107776380-107776381		96.81	100.00	100.00	96.55	94.12	93.65	96.30	95.06	97.12	100.00	100.00	100.00	92.73	98.05	94.85	100.00	95.45	100.00	94.12	99.05	98.68	100.00	100.00	93.48	100.00	95.83	100.00	100.00	97.56	95.93	94.94	96.08	100.00	100.00	97.78	95.59	98.15	96.32	-1.83	0.715710	0.892080
N	alternative_acceptor	GUK1	chr1	+	chr1:228333769-228334561;chr1:228333769-228334542	chr1:228333769-228334503		chr1:228334504-228334542;chr1:228334543-228334561	chr1:228334542-228334543;chr1:228334561-228334562		3.64	2.44	4.85	2.70	2.04	5.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	1.76	2.22	2.47	1.94	1.02	3.53	4.11	2.35	5.00	2.22	1.36	2.56	2.48	4.57	1.55	1.55	1.33	1.81	1.66	2.29	0.63	0.877483	0.957770
N	cassette	POLR2J	chr7	-	chr7:102114983-102119254	chr7:102114983-102116627;chr7:102116718-102119254		chr7:102116628-102116717			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.00	95.12	96.43	100.00	100.00	100.00	100.00	100.00	0.00	0.693618	0.887136
N	jcn_only_AD	AOAH,ZCWPW1	chr7	-	chr7:36662857-36667688;chr7:36662857-36671641	chr7:36662857-36664189		chr7:36664190-36667688;chr7:36667689-36671641	chr7:36667688-36667689;chr7:36671641-36671642		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
N	cassette	C14orf159	chr14	+	chr14:91681901-91691027;chr14:91688699-91691027	chr14:91688699-91690022,chr14:91681901-91690022;chr14:91690140-91691027		chr14:91690023-91690139			27.78	2.00	NA	NA	15.38	NA	2.22	NA	6.67	NA	4.76	NA	2.13	NA	16.67	NA	4.17	NA	11.11	18.75	6.67	NA	9.09	NA	11.76	27.78	NA	NA	0.00	NA	20.00	15.00	12.12	0.00	15.38	25.00	6.67	23.89	17.23	0.001377	0.126391
N	jcn_only_AA	DAZAP1	chr19	+	chr19:1418731-1421146;chr19:1418731-1419670	chr19:1418731-1421149		chr19:1419671-1421146;chr19:1421147-1421149	chr19:1421146-1421147;chr19:1421149-1421150		23.68	12.90	14.89	NA	32.26	NA	18.97	20.93	23.21	25.26	20.72	22.22	20.75	25.58	17.81	20.27	23.39	22.22	7.14	8.00	20.00	16.00	16.67	11.54	0.00	10.00	15.00	25.00	15.56	20.00	13.33	20.00	14.29	14.00	10.26	25.00	13.59	17.13	3.54	0.320413	0.663989
N	alternative_acceptor	ADRBK1	chr11	+	chr11:67051421-67051744;chr11:67051421-67051681;chr11:67051421-67051747	chr11:67051421-67051735		chr11:67051682-67051735;chr11:67051736-67051744;chr11:67051745-67051747	chr11:67051735-67051736;chr11:67051744-67051745;chr11:67051747-67051748		8.75	4.26	3.88	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	NA	3.12	7.02	0.00	0.00	4.29	7.69	0.00	2.94	4.07	NA	1.61	NA	0.00	5.43	6.38	0.00	0.00	0.00	2.34	1.47	-0.87	0.773013	0.915715
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075825-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		0.00	3.85	9.38	NA	5.88	20.00	6.06	13.16	10.13	7.50	15.79	17.14	3.08	15.53	7.50	5.77	10.91	4.76	7.14	3.12	2.63	0.00	20.00	0.00	9.52	0.00	5.45	15.00	10.53	10.53	1.89	5.36	6.67	0.00	5.13	7.69	6.37	2.50	-3.86	0.888047	0.961417
N	cassette	SMARCD2	chr17	-	chr17:61914405-61914800	chr17:61914405-61914505;chr17:61914598-61914800		chr17:61914506-61914597			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	90.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	NA	94.44	NA	90.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	HDAC5	chr17	-	chr17:42170854-42170942				chr17:42170853-42170854;chr17:42170942-42170943		3.33	0.00	3.33	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	8.33	5.88	NA	0.00	0.00	NA	0.00	0.00	0.00	0.594508	1.000000
K	alternative_last_exon	TRAPPC4	chr11	+	chr11:118892597-118895566	chr11:118892597-118894030	chr11:118895567-118896164	chr11:118894031-118894844			92.65	87.74	91.46	96.30	89.41	97.01	63.64	97.30	90.91	81.25	67.39	72.00	67.31	94.44	87.72	84.78	63.64	76.19	84.93	94.00	91.67	93.10	83.33	92.00	87.30	96.49	89.47	90.00	83.64	93.62	93.88	93.94	87.84	90.48	85.71	89.58	86.12	94.22	8.10	0.021412	0.204238
K	alternative_acceptor	MATR3	chr5	+	chr5:138658657-138660984;chr5:138658657-138661024	chr5:138658657-138661128		chr5:138660985-138661024;chr5:138661025-138661128	chr5:138661024-138661025;chr5:138661128-138661129		94.29	100.00	94.51	96.00	93.85	100.00	87.10	85.71	85.96	90.82	89.36	92.08	89.52	79.25	88.72	92.42	91.15	95.45	100.00	91.89	92.50	94.51	92.13	95.33	100.00	90.48	90.48	91.80	94.00	93.88	94.29	95.04	95.83	94.55	94.04	95.21	97.91	91.19	-6.73	0.100100	0.598353
N	cassette	VPS9D1	chr16	-	chr16:89774363-89775264	chr16:89774363-89774834;chr16:89774940-89775264		chr16:89774835-89774939			96.67	100.00	100.00	NA	100.00	100.00	NA	90.91	100.00	NA	NA	100.00	100.00	94.44	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	98.08	NA	NA	100.00	100.00	97.14	100.00	100.00	100.00	96.97	100.00	98.34	-1.66	0.108483	0.702970
K	intron_retention		chrX	+	chrX:153628968-153629042				chrX:153628967-153628968;chrX:153629042-153629043		8.39	3.33	5.80	5.37	3.68	4.28	0.30	2.72	1.13	1.26	0.76	0.64	0.58	1.20	3.49	0.79	1.15	0.76	3.13	11.43	5.02	8.52	5.26	7.41	1.93	11.18	4.50	4.36	3.42	4.34	18.29	11.34	5.53	5.11	4.59	4.40	2.53	9.79	7.26	0.105917	1.000000
N	jcn_only_AD	NCAPH2	chr22	+	chr22:50954970-50955855	chr22:50954978-50955855		chr22:50954970-50954977	chr22:50954969-50954970		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	94.44	90.91	100.00	100.00	88.46	100.00	100.00	0.00	0.373901	0.657607
N	alternative_donor	TRMT5	chr14	-	chr14:61441913-61442192	chr14:61441913-61442188		chr14:61442189-61442192	chr14:61442192-61442193		11.11	0.00	5.00	1.28	5.88	2.13	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.12	8.70	0.00	9.23	5.08	10.00	0.00	0.00	7.14	0.00	0.00	5.00	17.65	13.33	6.52	6.00	8.57	0.00	0.00	4.35	4.35	0.199176	0.570816
K	intron_retention		chr16	-	chr16:1499095-1499276				chr16:1499094-1499095;chr16:1499276-1499277		2.94	4.59	6.73	4.00	3.03	NA	0.00	0.00	1.00	0.00	0.00	0.00	0.88	0.00	2.25	0.00	0.82	0.00	5.41	1.69	1.35	9.43	7.44	4.35	13.73	1.54	3.31	1.85	3.96	2.86	4.35	6.12	6.67	2.97	6.06	3.00	5.00	1.61	-3.38	0.461927	1.000000
K	jcn_only_AD	TMEM208	chr16	+	chr16:67262535-67262699	chr16:67262561-67262699		chr16:67262535-67262560	chr16:67262534-67262535		0.00	3.78	3.95	4.30	3.97	4.26	2.78	0.00	5.56	0.00	3.51	6.45	2.50	3.03	5.48	5.71	4.23	0.00	1.79	2.47	2.94	3.57	3.97	5.56	0.00	5.71	0.00	4.92	3.53	7.14	2.04	6.50	2.08	3.12	3.45	1.64	2.29	2.25	-0.04	0.959243	0.977934
K	jcn_only_AD	BABAM1,CTD-2278I10.6	chr19	+	chr19:17378326-17379602	chr19:17378337-17379602		chr19:17378326-17378336	chr19:17378325-17378326		100.00	100.00	95.35	NA	100.00	NA	100.00	96.43	94.44	89.47	94.83	91.67	95.89	100.00	92.11	89.74	96.97	91.43	100.00	88.24	95.00	NA	88.46	90.91	NA	100.00	97.22	87.50	93.33	NA	94.44	87.18	100.00	95.24	100.00	100.00	100.00	98.22	-1.78	0.242798	0.657607
K	intron_retention	MIDN	chr19	+	chr19:1255694-1256993				chr19:1255693-1255694;chr19:1256993-1256994		4.35	0.00	7.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	NA	5.45	9.09	4.88	1.52	5.45	0.00	4.92	4.65	3.33	0.00	0.00	11.11	9.09	NA	2.27	0.00	5.36	0.00	4.63	4.63	0.116277	1.000000
K	cassette	NR1H3	chr11	+	chr11:47280811-47281341	chr11:47280811-47280911;chr11:47281158-47281341		chr11:47280912-47281157			21.11	0.00	15.62	6.67	15.15	NA	2.75	2.02	1.40	0.00	3.33	0.00	0.00	2.82	1.83	0.83	3.45	0.00	8.33	16.57	4.76	11.90	22.55	13.73	36.36	15.06	21.90	12.82	18.75	18.18	8.38	13.76	4.76	13.04	13.86	7.46	3.75	11.72	7.97	0.733913	0.907179
K	alternative_last_exon	SLC36A1	chr5	+	chr5:150859051-150860693,chr5:150859051-150891848;chr5:150859051-150867543	chr5:150859051-150859617	chr5:150867544-150871942	chr5:150859618-150859704			0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.535374
K	alternative_first_exon	EEF1D	chr8	-	chr8:144669023-144679517,chr8:144669023-144679048	chr8:144669023-144671160	chr8:144679518-144679558	chr8:144671161-144672630			6.54	1.95	5.91	2.17	2.16	2.11	2.82	5.26	4.40	1.52	1.31	1.61	2.52	3.41	6.25	3.61	2.13	2.86	2.11	5.68	3.18	6.41	4.86	4.90	2.99	6.06	4.12	4.59	3.28	3.23	4.90	5.85	2.17	7.37	7.45	7.63	2.34	5.47	3.12	0.000732	0.015511
N	jcn_only_AD	CLCN7	chr16	-	chr16:1515340-1524834;chr16:1515340-1521991	chr16:1515340-1521624		chr16:1521625-1521991;chr16:1521992-1524834	chr16:1521991-1521992;chr16:1524834-1524835		0.00	0.00	2.08	NA	NA	NA	0.00	0.00	1.64	0.00	0.00	0.00	5.33	0.00	3.23	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.363217	0.657607
N	intron_retention		chr2	+	chr2:27001029-27003588				chr2:27001028-27001029;chr2:27003588-27003589		96.97	97.85	93.55	100.00	100.00	100.00	100.00	95.83	100.00	100.00	95.74	NA	100.00	100.00	100.00	93.55	100.00	NA	98.70	95.65	94.44	100.00	98.67	NA	100.00	100.00	90.91	100.00	100.00	100.00	89.66	88.46	92.75	100.00	95.74	100.00	99.35	96.40	-2.95	0.684945	1.000000
K	alternative_acceptor	CC2D1B	chr1	-	chr1:52823571-52824002	chr1:52823589-52824002		chr1:52823571-52823588	chr1:52823570-52823571		16.22	0.00	17.07	NA	13.64	NA	3.70	10.87	10.53	9.38	11.36	4.55	6.06	8.51	10.81	8.33	14.29	8.00	NA	21.95	18.75	25.00	20.00	17.86	NA	15.69	14.29	13.04	6.25	16.67	13.64	20.83	18.18	16.22	20.00	12.82	4.88	14.66	9.79	0.154733	0.660713
N	jcn_only_AA	OAS1	chr12	+	chr12:113346630-113348840;chr12:113346630-113348902	chr12:113346630-113348855		chr12:113348841-113348855;chr12:113348856-113348902	chr12:113348855-113348856;chr12:113348902-113348903		93.03	100.00	98.15	90.00	NA	90.91	93.28	89.35	86.11	89.47	88.00	91.88	93.02	91.25	90.10	93.15	89.13	94.64	NA	92.34	89.13	93.33	100.00	93.17	100.00	91.36	98.28	93.18	100.00	94.76	90.81	93.02	NA	91.55	100.00	92.05	96.64	91.31	-5.33	0.073675	0.663989
K	intron_retention		chr20	+	chr20:62365092-62366056				chr20:62365091-62365092;chr20:62366056-62366057		12.96	22.22	15.22	11.63	5.41	9.23	0.00	0.00	0.00	4.17	4.00	3.70	5.56	3.23	11.43	6.98	0.00	0.00	13.33	13.89	11.90	11.54	16.67	13.51	8.77	12.12	15.79	9.30	10.71	8.33	15.15	14.00	17.14	11.11	14.29	11.69	11.05	12.54	1.49	0.988021	1.000000
N	jcn_only_AA		chr19	+	chr19:1221340-1221664;chr19:1221340-1221694	chr19:1221340-1221947		chr19:1221665-1221694;chr19:1221695-1221947	chr19:1221694-1221695;chr19:1221947-1221948		100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.65	94.23	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.768350	0.896803
K	intron_retention	TUFM	chr16	-	chr16:28855177-28855270				chr16:28855176-28855177;chr16:28855270-28855271		3.39	0.00	2.13	0.00	1.12	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	3.64	1.81	1.67	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	10.00	6.98	4.39	1.33	0.00	0.00	0.00	1.70	1.70	0.518996	1.000000
K	intron_retention		chr15	.	chr15:74912567-74914460				chr15:74912566-74912567;chr15:74914460-74914461		45.31	59.57	44.44	29.41	44.44	NA	4.00	0.00	0.00	0.00	0.00	0.00	7.69	1.82	2.13	3.17	0.00	3.03	46.67	42.22	27.59	35.48	35.59	52.38	50.00	31.37	32.76	16.00	15.00	15.15	40.91	43.75	NA	36.96	41.86	35.21	46.67	36.14	-10.53	0.974942	1.000000
K	intron_retention	WTAP	chr6	+	chr6:160169402-160169621				chr6:160169401-160169402;chr6:160169621-160169622		74.79	61.22	75.48	64.29	64.37	79.78	91.67	85.66	90.16	81.25	85.71	84.64	80.00	86.51	89.67	77.66	85.94	83.42	56.25	71.00	75.86	64.34	65.00	63.48	NA	75.38	76.36	74.34	74.16	75.32	69.32	71.45	70.97	71.88	69.27	69.25	70.97	75.09	4.12	0.737992	1.000000
K	cassette	HNRNPK	chr9	-	chr9:86588315-86589431	chr9:86588315-86588816;chr9:86588889-86589431		chr9:86588817-86588888			73.43	72.22	78.71	80.95	74.19	NA	87.36	86.31	89.62	89.93	89.90	88.64	88.60	87.85	87.63	90.66	88.70	89.44	64.29	76.03	88.00	75.46	79.20	79.19	60.00	80.35	78.90	81.92	80.42	77.24	79.55	81.17	70.59	80.22	77.90	81.69	71.41	79.95	8.54	0.246141	0.709176
N	cassette	SP110	chr2	-	chr2:231065682-231072705	chr2:231065682-231067294;chr2:231067445-231072705		chr2:231067295-231067444			98.39	100.00	100.00	100.00	100.00	95.19	100.00	99.11	98.36	100.00	100.00	96.24	100.00	98.72	100.00	94.12	87.50	96.45	100.00	100.00	100.00	NA	NA	99.24	100.00	98.68	100.00	100.00	100.00	98.27	96.84	95.65	100.00	93.75	100.00	97.26	100.00	98.70	-1.30	0.022669	0.401090
K	alternative_donor	PABPC4	chr1	-	chr1:40026795-40027399	chr1:40026795-40027356		chr1:40027357-40027399	chr1:40027399-40027400		96.55	92.26	93.75	93.62	96.72	90.80	93.00	100.00	87.50	92.39	89.38	94.44	96.55	100.00	93.75	96.00	94.51	100.00	92.36	100.00	88.89	94.44	96.53	97.01	87.60	100.00	89.29	94.55	96.06	96.36	91.01	89.36	93.94	96.32	90.62	96.18	92.68	100.00	7.32	0.020418	0.274720
K	alternative_donor	RPL10A	chr6	+	chr6:35436805-35437157	chr6:35437063-35437157		chr6:35436805-35437062	chr6:35436804-35436805		4.35	2.43	5.77	5.00	3.50	2.54	0.32	0.00	1.16	0.73	0.59	0.20	0.29	0.00	1.50	1.63	0.43	0.18	2.10	6.00	1.77	10.03	6.50	7.24	0.81	0.00	4.00	3.27	2.63	1.69	16.67	7.50	3.01	3.21	3.76	2.47	1.46	2.17	0.72	0.311980	0.650093
K	alternative_donor	MYO9B	chr19	+	chr19:17322584-17322703	chr19:17322596-17322703		chr19:17322584-17322595	chr19:17322583-17322584		59.65	56.25	65.31	57.50	64.21	48.57	56.52	46.67	61.54	60.00	60.87	NA	65.38	72.73	59.09	77.14	78.57	58.33	61.70	56.10	51.85	71.43	73.06	68.00	54.41	46.30	58.33	64.91	68.28	63.16	67.21	67.35	64.41	69.86	72.09	67.80	59.11	57.88	-1.23	0.736906	0.891105
K	intron_retention	RUVBL2	chr19	+	chr19:49513324-49513744				chr19:49513323-49513324;chr19:49513744-49513745		4.35	12.82	0.00	0.00	3.23	13.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	6.25	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	9.09	3.23	0.00	0.00	4.00	1.51	0.00	-1.51	0.756404	1.000000
K	intron_retention	COG1	chr17	+	chr17:71201820-71202292				chr17:71201819-71201820;chr17:71202292-71202293		13.64	2.70	17.86	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.00	NA	5.00	NA	4.76	0.00	0.00	0.00	10.53	20.00	11.76	10.00	13.04	10.53	17.65	9.52	9.09	7.69	3.70	0.00	5.00	17.24	0.00	11.76	14.29	6.45	3.85	9.52	5.67	0.644040	1.000000
K	intron_retention	ARHGEF11	chr1	-	chr1:156911782-156912481				chr1:156911781-156911782;chr1:156912481-156912482		4.62	5.56	2.47	NA	NA	0.00	0.00	1.10	0.64	0.00	5.45	0.00	0.00	0.47	2.30	0.00	0.00	0.00	NA	1.54	0.00	0.00	0.00	1.43	0.00	3.64	1.85	0.00	0.00	1.64	0.00	3.03	NA	2.50	5.77	3.82	0.00	1.32	1.32	0.652766	1.000000
K	cassette	BNIP2	chr15	-	chr15:59956320-59961090	chr15:59956320-59960301;chr15:59960338-59961090		chr15:59960302-59960337			40.91	72.00	43.40	NA	83.33	50.00	80.39	65.22	61.70	82.81	78.57	72.09	85.94	63.08	71.74	80.56	86.54	85.00	69.23	36.59	47.37	76.00	68.57	72.41	NA	60.71	65.00	80.95	86.96	76.47	34.78	48.84	44.44	64.71	66.67	63.64	72.00	50.81	-21.19	0.058853	0.604781
N	jcn_only_AA	ISCA1	chr9	-	chr9:88881107-88886921;chr9:88881100-88886921	chr9:88880933-88886921		chr9:88880933-88881099;chr9:88881100-88881106	chr9:88880932-88880933;chr9:88881099-88881100		0.00	6.67	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	TIMM17A	chr1	+	chr1:201926703-201934560;chr1:201928037-201934560	chr1:201926703-201932743,chr1:201928037-201932743;chr1:201932873-201934560		chr1:201932744-201932872			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.15	100.00	100.00	98.15	100.00	97.67	100.00	100.00	100.00	100.00	96.67	97.37	99.02	97.59	99.05	NA	100.00	100.00	100.00	100.00	100.00	93.94	96.23	100.00	98.90	100.00	98.28	100.00	100.00	0.00	0.323347	0.709176
N	cassette	SAT2	chr17	-	chr17:7529933-7530874;chr17:7529933-7530460	chr17:7529933-7530024;chr17:7530112-7530460,chr17:7530112-7530874		chr17:7530025-7530111			82.86	79.55	100.00	75.00	87.50	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	73.81	78.79	83.33	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	64.52	83.33	71.93	80.00	80.95	100.00	76.68	82.86	6.18	0.687640	0.885445
K	intron_retention	NSUN2	chr5	-	chr5:6604799-6605385				chr5:6604798-6604799;chr5:6605385-6605386		17.65	23.08	18.42	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	5.88	1.41	5.08	0.00	NA	0.00	NA	5.00	2.08	3.28	NA	6.67	13.64	3.03	3.33	2.70	6.67	9.38	8.33	1.67	2.13	7.58	7.29	3.33	-3.96	0.942296	1.000000
K	cassette	USP39	chr2	+	chr2:85872207-85875052	chr2:85872207-85872936;chr2:85873023-85875052		chr2:85872937-85873022			8.82	4.17	5.77	5.00	2.94	0.00	0.00	8.70	4.76	3.12	2.00	0.00	0.00	0.00	6.06	3.57	1.67	0.00	7.41	6.25	4.76	0.00	4.00	8.70	0.00	10.00	5.77	5.26	8.11	4.55	11.76	10.45	5.41	6.25	6.82	11.76	2.08	8.76	6.67	0.052805	0.583384
N	alternative_acceptor	LYL1	chr19	-	chr19:13212010-13213344;chr19:13213253-13213344	chr19:13211863-13213344		chr19:13211863-13212009;chr19:13212010-13213252	chr19:13211862-13211863;chr19:13212009-13212010		9.09	4.00	13.33	NA	10.64	NA	22.73	NA	NA	NA	20.00	NA	9.76	16.67	NA	NA	8.57	NA	11.43	15.38	18.18	NA	5.88	NA	6.98	0.00	7.14	NA	17.07	NA	NA	20.00	15.56	NA	4.55	NA	10.59	12.23	1.64	0.765973	0.913895
K	intron_retention	CRELD2	chr22	+	chr22:50316966-50318007				chr22:50316965-50316966;chr22:50318007-50318008		17.65	4.17	NA	14.29	3.85	7.41	0.00	0.00	0.00	0.00	0.00	0.00	1.85	NA	0.00	0.00	0.00	0.00	2.63	7.14	3.23	11.11	8.82	30.00	5.71	0.00	NA	0.00	4.17	13.64	0.00	6.67	3.70	0.00	10.53	23.08	3.17	0.00	-3.17	0.985957	1.000000
K	jcn_only_AA	TUBB2A	chr6	-	chr6:3155158-3155858	chr6:3155290-3155858		chr6:3155158-3155289	chr6:3155157-3155158		5.19	0.00	0.00	0.00	2.50	NA	2.56	0.00	3.23	0.00	1.54	0.00	0.00	4.48	3.52	2.83	2.22	2.76	0.00	1.35	0.00	0.00	3.74	0.93	NA	0.00	0.00	0.00	5.08	4.35	0.00	0.00	0.00	1.83	3.70	1.45	0.00	0.68	0.68	0.266392	0.663989
K	intron_retention	VPS16	chr20	+	chr20:2844730-2844824				chr20:2844729-2844730;chr20:2844824-2844825		8.82	24.24	9.76	NA	9.09	NA	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	2.94	0.00	NA	10.00	4.17	8.33	12.90	14.29	NA	12.50	9.68	NA	12.00	6.67	6.67	7.69	14.29	7.69	12.90	8.11	7.14	7.75	0.60	0.618083	1.000000
N	alternative_donor	CNPY2,RP11-977G19.10	chr12	-	chr12:56709027-56709690;chr12:56709027-56709604	chr12:56709027-56709661		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		3.85	10.71	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	7.41	4.76	NA	0.00	3.33	0.00	9.09	0.00	0.00	5.00	0.00	5.00	0.00	0.00	0.00	3.03	0.00	6.67	0.00	0.00	3.03	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.388195	0.657675
N	alternative_last_exon	TNPO3	chr7	-	chr7:128595440-128607333	chr7:128597370-128607333	chr7:128594234-128595439	chr7:128597277-128597369			96.15	88.00	96.43	NA	92.86	NA	95.45	95.00	94.44	96.15	96.88	94.44	96.00	95.65	95.45	96.88	93.10	92.31	NA	94.44	83.33	87.50	96.88	95.83	17.07	95.65	95.45	85.71	95.45	94.44	80.00	95.00	NA	96.77	95.83	97.30	91.72	95.33	3.60	0.401676	0.567228
K	alternative_acceptor	DENND4B	chr1	-	chr1:153904732-153905117	chr1:153904917-153905117		chr1:153904732-153904916	chr1:153904731-153904732		97.44	96.88	100.00	NA	92.86	NA	95.24	100.00	100.00	95.00	97.73	NA	100.00	100.00	96.97	100.00	95.45	NA	NA	100.00	100.00	94.74	98.11	100.00	100.00	100.00	100.00	100.00	100.00	92.31	92.86	100.00	90.00	100.00	100.00	100.00	96.88	100.00	3.12	0.401699	0.718965
K	alternative_acceptor	MYO9B	chr19	+	chr19:17313113-17313653	chr19:17313113-17313650		chr19:17313651-17313653	chr19:17313653-17313654		53.97	53.85	44.44	NA	46.51	NA	55.22	50.00	52.27	56.16	56.64	58.00	48.08	53.66	52.78	58.82	51.49	60.34	28.57	53.19	53.33	51.61	50.00	60.75	23.53	48.39	53.12	51.02	54.55	60.61	55.56	58.33	33.33	51.54	50.00	47.98	40.70	53.42	12.72	0.084011	0.585944
K	intron_retention	TRIM22	chr11	+	chr11:5717886-5718477				chr11:5717885-5717886;chr11:5718477-5718478		7.85	0.00	11.49	0.00	0.00	0.00	0.00	1.68	1.85	1.37	0.00	2.08	0.75	1.29	3.10	2.53	0.00	1.66	0.00	6.85	2.50	3.33	0.00	10.60	0.00	5.11	8.00	6.33	0.00	3.31	6.45	5.71	0.00	10.58	5.00	8.25	0.00	5.78	5.78	0.016730	1.000000
K	intron_retention	CD151	chr11	+	chr11:836844-837249				chr11:836843-836844;chr11:837249-837250		3.45	3.18	3.42	4.00	4.49	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.23	0.00	0.00	0.29	0.30	0.00	3.28	2.13	1.44	5.26	4.00	0.00	4.69	0.93	3.45	1.45	2.60	0.00	3.77	3.39	2.70	1.34	2.30	1.30	2.94	1.53	-1.41	0.889773	1.000000
K	intron_retention		chr9	-	chr9:130494971-130495663				chr9:130494970-130494971;chr9:130495663-130495664		17.65	0.00	24.00	NA	14.29	NA	0.00	5.56	0.00	4.17	0.00	0.00	4.26	0.00	0.00	4.76	1.39	0.00	0.00	0.00	0.00	18.18	15.00	NA	NA	6.25	11.76	0.00	15.79	NA	NA	11.11	NA	0.00	17.65	0.00	0.00	5.56	5.56	0.466215	1.000000
N	cassette	ACIN1	chr14	-	chr14:23533698-23538684	chr14:23533698-23535174;chr14:23535218-23538684		chr14:23535175-23535217			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.32	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	FMNL1	chr17	+	chr17:43313612-43314647				chr17:43313611-43313612;chr17:43314647-43314648		1.98	10.53	2.77	NA	0.00	NA	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.03	6.25	0.00	1.15	0.00	0.00	1.56	2.65	0.00	0.00	0.00	0.00	2.21	5.56	0.00	1.19	2.56	0.00	0.52	0.52	0.673675	1.000000
K	intron_retention	TDP2	chr6	-	chr6:24666840-24666925				chr6:24666839-24666840;chr6:24666925-24666926		3.26	0.00	6.81	0.00	1.54	NA	1.20	1.59	1.28	1.61	1.89	0.87	1.61	1.57	2.80	2.02	1.48	1.20	0.00	5.30	5.26	3.93	3.01	4.03	0.00	3.95	4.97	2.70	3.04	3.64	10.48	6.42	6.67	4.35	3.30	3.66	0.60	3.60	3.00	0.615167	1.000000
N	cassette	PCBP2	chr12	+	chr12:53861078-53862563;chr12:53861078-53862560	chr12:53861078-53861588;chr12:53861628-53862560,chr12:53861628-53862563		chr12:53861589-53861627			46.22	60.34	47.01	68.38	65.89	65.96	69.93	62.50	57.27	70.72	73.76	73.65	74.62	66.03	65.40	78.90	75.65	75.60	53.94	46.29	58.20	70.15	62.73	67.98	49.22	46.99	39.60	67.19	63.80	62.15	39.20	41.98	50.46	64.09	62.59	62.47	57.14	46.64	-10.50	0.191081	0.709176
K	intron_retention	CDK11B	chr1	-	chr1:1572367-1572442				chr1:1572366-1572367;chr1:1572442-1572443		9.09	1.61	8.77	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	8.33	5.00	4.35	4.35	7.69	0.00	0.00	4.41	0.00	0.00	0.00	28.30	17.95	10.81	5.88	5.45	2.00	0.81	4.17	3.36	0.555269	1.000000
K	intron_retention	ASNSD1	chr2	+	chr2:190532323-190532489				chr2:190532322-190532323;chr2:190532489-190532490		6.25	0.00	4.65	9.68	2.63	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	1.92	4.00	3.70	10.26	0.00	0.00	5.56	0.00	0.00	7.50	5.56	2.70	2.63	4.65	2.78	6.00	0.00	2.78	2.78	0.718700	1.000000
K	alternative_first_exon	TMEM18	chr2	-	chr2:675631-676112;chr2:675631-676573;chr2:675631-675757	chr2:675631-677288	chr2:676574-676704;chr2:675758-676238	chr2:677289-677439			96.30	100.00	96.00	95.00	96.67	NA	90.24	88.24	94.87	97.78	94.64	96.88	85.29	85.00	90.70	80.56	84.44	93.75	100.00	90.48	95.00	88.24	89.66	95.45	NA	90.00	90.00	89.47	82.61	91.30	95.65	94.12	100.00	91.67	96.15	91.43	100.00	90.24	-9.76	0.284821	0.500310
N	alternative_acceptor	RNF126	chr19	-	chr19:648976-649678	chr19:649053-649678		chr19:648976-649052	chr19:648975-648976		9.09	8.00	13.64	5.00	5.56	0.00	0.00	0.00	4.76	1.75	0.00	0.00	3.23	9.09	0.00	2.74	2.13	0.00	7.14	17.65	13.64	5.56	6.90	7.69	NA	NA	10.00	0.00	9.09	5.56	23.08	11.54	20.00	4.00	15.38	8.00	7.14	9.09	1.95	0.455053	0.760125
N	jcn_only_AA	TMEM128	chr4	-	chr4:4237978-4239553;chr4:4238805-4239553	chr4:4237984-4239553		chr4:4237978-4237983;chr4:4237984-4238804	chr4:4237977-4237978;chr4:4237983-4237984		100.00	100.00	93.67	NA	100.00	NA	96.55	86.36	96.08	95.24	90.32	100.00	86.67	80.00	91.23	78.95	89.74	90.91	100.00	100.00	100.00	92.31	94.74	100.00	NA	91.49	100.00	83.33	94.12	95.45	100.00	97.14	100.00	96.77	91.11	89.74	100.00	95.75	-4.25	0.419376	0.691465
N	jcn_only_AD	DHPS	chr19	-	chr19:12790737-12790963;chr19:12790737-12790974;chr19:12790737-12791015	chr19:12790737-12791009		chr19:12790964-12790974;chr19:12790975-12791009;chr19:12791010-12791015	chr19:12790974-12790975;chr19:12791009-12791010;chr19:12791015-12791016		10.34	0.00	0.00	NA	5.88	NA	6.06	10.00	0.00	6.67	8.57	0.00	0.00	10.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	12.50	6.06	NA	0.00	0.00	0.00	6.67	16.67	NA	18.75	8.33	0.00	10.00	10.00	0.533641	0.757311
K	intron_retention	CHPF2	chr7	+	chr7:150933677-150934459				chr7:150933676-150933677;chr7:150934459-150934460		14.71	0.00	13.46	NA	11.11	NA	0.00	0.00	7.41	0.00	3.45	NA	3.70	0.00	6.67	18.75	4.00	NA	NA	8.70	7.14	26.67	23.68	NA	NA	10.71	14.00	NA	14.81	NA	11.11	16.28	8.33	20.00	24.32	25.00	1.85	9.71	7.86	0.735175	1.000000
N	cassette	POLG	chr15	-	chr15:89860059-89861771	chr15:89860059-89860606;chr15:89860768-89861771		chr15:89860607-89860767			100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	TMEM55B	chr14	-	chr14:20927893-20928350				chr14:20927892-20927893;chr14:20928350-20928351		8.16	4.35	14.58	NA	6.67	NA	2.04	1.67	0.00	0.00	0.00	0.00	3.39	0.00	3.64	0.00	0.00	0.00	NA	5.88	5.26	5.88	6.12	11.76	NA	5.00	5.77	5.88	7.69	0.00	9.76	10.17	8.33	8.33	6.52	10.00	3.87	5.44	1.57	0.648840	1.000000
N	alternative_acceptor	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660770;chr9:35660645-35660742	chr9:35660645-35660767		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		0.00	1.80	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.23	NA	1.59	0.00	1.79	5.00	3.57	NA	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.80	0.00	-0.80	0.080006	0.585944
K	alternative_acceptor	CCDC84	chr11	+	chr11:118885794-118886016	chr11:118885794-118885997		chr11:118885998-118886016	chr11:118886016-118886017		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	4.26	5.88	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	coord_cassette	PFDN2	chr1	-	chr1:161070650-161087741	chr1:161070650-161071837;chr1:161071962-161072076;chr1:161072166-161087741		chr1:161071838-161071961;chr1:161072077-161072165			97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.05	96.51	100.00	97.30	100.00	98.55	98.67	100.00	95.65	97.40	95.45	96.88	100.00	96.72	100.00	94.87	100.00	96.83	100.00	97.94	100.00	95.74	96.77	93.02	98.63	97.18	98.44	97.35	98.94	1.59	0.471512	0.692687
K	intron_retention	ARL6IP4	chr12	+	chr12:123465847-123466141				chr12:123465846-123465847;chr12:123466141-123466142		25.93	24.56	39.53	27.03	22.86	16.33	6.33	10.53	11.36	9.43	12.70	5.56	8.42	15.79	20.00	10.53	9.33	9.68	19.51	33.33	18.82	36.00	26.32	35.00	20.16	21.43	43.24	14.71	14.78	15.22	33.33	40.62	23.88	14.29	23.68	29.41	19.84	23.68	3.84	0.573472	1.000000
K	intron_retention	MVB12A	chr19	+	chr19:17535824-17535855				chr19:17535823-17535824;chr19:17535855-17535856		100.00	100.00	100.00	100.00	100.00	100.00	95.45	NA	92.86	90.00	100.00	NA	100.00	NA	100.00	NA	94.12	NA	98.67	100.00	97.92	NA	100.00	NA	100.00	100.00	95.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.434850	1.000000
N	jcn_only_AA	LSM4	chr19	-	chr19:18417258-18420487	chr19:18418366-18420487		chr19:18417258-18418365	chr19:18417257-18417258		100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.53	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	ZNF592	chr15	+	chr15:85341706-85341818	chr15:85341706-85341792		chr15:85341793-85341818	chr15:85341818-85341819		0.00	0.00	0.00	NA	0.00	NA	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	6.25	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.373901	0.709013
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48665472-48665866;chr3:48665738-48665866	chr3:48665621-48665866		chr3:48665472-48665620;chr3:48665621-48665737	chr3:48665471-48665472;chr3:48665620-48665621		8.93	11.11	8.45	NA	3.57	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.88	0.00	NA	0.00	NA	5.00	8.33	5.00	NA	6.06	NA	0.00	8.33	8.57	NA	4.55	NA	7.69	10.11	0.00	0.00	9.52	6.25	0.00	8.33	8.33	0.039629	0.560254
N	alternative_donor	UBXN1	chr11	-	chr11:62446216-62446336;chr11:62446216-62446510	chr11:62446216-62446306		chr11:62446307-62446336;chr11:62446337-62446510	chr11:62446336-62446337;chr11:62446510-62446511		2.90	1.67	2.53	2.22	2.22	2.13	0.00	0.00	1.85	2.17	1.96	0.00	0.00	0.00	1.72	1.59	0.00	0.00	2.94	4.17	2.44	2.78	3.70	5.88	1.08	1.96	2.63	0.00	1.43	1.67	5.00	3.23	2.60	2.17	1.72	3.28	1.38	2.43	1.05	0.364092	0.650093
K	coord_cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4455569-4462356	chr16:4455569-4457501;chr16:4457686-4458181;chr16:4458253-4462356		chr16:4457502-4457685;chr16:4458182-4458252			97.37	100.00	94.12	NA	91.67	NA	100.00	98.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	96.23	100.00	95.24	100.00	100.00	95.83	95.00	NA	97.06	100.00	97.78	100.00	98.05	-1.95	0.045817	0.643829
K	jcn_only_AA	YIPF3	chr6	-	chr6:43480837-43481096	chr6:43480939-43481096		chr6:43480837-43480938	chr6:43480836-43480837		97.80	100.00	95.83	100.00	96.97	NA	100.00	100.00	100.00	96.97	97.85	96.49	97.56	97.01	97.22	98.18	98.75	97.44	100.00	97.26	97.73	100.00	94.44	98.18	100.00	97.75	100.00	95.83	98.04	100.00	96.97	97.85	95.65	98.18	95.83	97.47	100.00	97.50	-2.50	0.261339	0.663989
K	intron_retention	SGSM2	chr17	+	chr17:2276808-2278785				chr17:2276807-2276808;chr17:2278785-2278786		16.67	0.00	20.00	NA	NA	NA	0.00	0.00	5.56	NA	NA	NA	8.33	0.00	3.70	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	8.33	17.86	6.67	6.25	NA	NA	16.67	NA	11.11	25.00	5.26	0.00	0.00	0.00	0.933999	1.000000
K	alternative_last_exon	PDAP1	chr7	-	chr7:98994037-98995484;chr7:98990423-98995484	chr7:98994364-98995484	chr7:98990323-98990422	chr7:98992586-98994363			100.00	80.36	100.00	91.94	87.63	89.47	100.00	100.00	100.00	100.00	100.00	100.00	85.37	100.00	92.45	100.00	100.00	100.00	88.42	100.00	85.71	89.13	82.35	95.12	82.72	88.64	91.80	93.88	87.01	91.78	93.62	100.00	100.00	73.44	80.33	78.21	86.90	100.00	13.10	0.097343	0.315390
N	jcn_only_AD	ZNF592	chr15	+	chr15:85343209-85345093	chr15:85344835-85345093		chr15:85343209-85344834	chr15:85343208-85343209		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.34	0.00	0.00	11.11	4.35	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.67	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.910830	0.957274
K	jcn_only_AD	RPL8	chr8	-	chr8:146016693-146017234	chr8:146016693-146016755					84.00	91.85	87.23	95.28	92.42	91.03	87.27	94.12	89.13	95.04	85.83	84.72	88.78	100.00	100.00	90.84	87.14	88.66	82.35	63.16	78.26	81.05	86.44	92.54	90.85	70.00	100.00	91.36	91.77	90.57	82.35	75.00	83.02	93.59	93.83	94.87	88.03	83.17	-4.85	0.424818	0.687445
N	alternative_acceptor	TMEM176A	chr7	+	chr7:44802586-44802969;chr7:44802586-44802859	chr7:44802586-44802854		chr7:44802855-44802859;chr7:44802860-44802969	chr7:44802859-44802860;chr7:44802969-44802970		100.00	100.00	95.83	NA	NA	NA	100.00	100.00	96.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.86	100.00	NA	100.00	100.00	100.00	95.35	97.96	100.00	100.00	NA	100.00	96.08	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.186388	0.660713
N	alternative_acceptor	EIF4A1	chr17	+	chr17:7478577-7479628;chr17:7478577-7479847	chr17:7478577-7479841		chr17:7479629-7479841;chr17:7479842-7479847	chr17:7479841-7479842;chr17:7479847-7479848		85.06	83.24	85.50	91.15	92.41	89.00	84.45	83.93	88.31	87.65	87.17	85.60	84.87	83.89	83.95	88.65	84.79	87.90	90.32	87.22	86.58	92.95	91.09	90.52	95.06	83.52	84.95	92.89	90.86	90.18	87.85	85.37	86.70	91.90	91.47	92.64	85.78	84.50	-1.29	0.305457	0.709013
N	cassette	ADRM1	chr20	+	chr20:60878106-60881252;chr20:60878102-60881252;chr20:60878106-60879516	chr20:60878102-60878623,chr20:60878106-60878623;chr20:60878838-60881252,chr20:60878838-60879516		chr20:60878624-60878837			94.74	97.20	95.30	100.00	98.23	89.09	97.17	97.99	100.00	99.17	98.90	100.00	100.00	100.00	100.00	98.57	98.48	100.00	100.00	92.48	96.03	93.55	100.00	92.96	100.00	97.24	97.37	97.62	97.78	98.59	87.65	93.92	100.00	96.77	100.00	93.89	100.00	95.99	-4.01	0.078677	0.641134
K	intron_retention	AIFM2	chr10	-	chr10:71874086-71874675				chr10:71874085-71874086;chr10:71874675-71874676		9.30	0.00	9.09	3.49	3.03	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.44	0.00	0.00	0.00	0.00	4.65	1.05	6.82	5.00	6.25	0.00	2.83	7.14	0.00	2.27	1.98	6.59	4.05	0.00	7.58	8.89	9.84	0.00	3.74	3.74	0.139958	1.000000
K	alternative_first_exon	EEF1G,RP11-864I4.1	chr11	-	chr11:62340215-62341453;chr11:62340215-62342148	chr11:62340215-62341302	chr11:62342149-62342380	chr11:62341303-62341445			100.00	97.06	98.44	100.00	98.61	92.31	98.37	100.00	97.30	99.39	98.58	98.47	97.06	100.00	100.00	99.24	99.47	99.07	88.89	97.14	94.12	100.00	100.00	97.67	NA	100.00	98.00	100.00	99.18	100.00	96.15	97.92	94.29	98.41	97.62	99.03	97.06	100.00	2.94	0.093232	0.259301
N	alternative_acceptor	GLS	chr2	+	chr2:191819545-191827555	chr2:191819545-191826562		chr2:191826563-191827555	chr2:191827555-191827556		53.33	0.00	10.00	2.50	2.78	2.17	3.33	20.00	5.88	8.33	0.00	12.50	4.17	17.65	8.82	23.08	10.00	15.38	0.00	69.77	2.08	16.33	4.65	36.99	0.00	48.78	11.76	48.15	5.00	13.79	20.51	25.81	4.17	40.00	4.84	35.20	1.67	34.65	32.98	0.009480	0.466251
K	alternative_acceptor	CBX3	chr7	+	chr7:26246131-26248085	chr7:26246131-26248012		chr7:26248013-26248085	chr7:26248085-26248086		97.79	100.00	96.59	93.55	91.67	100.00	95.33	98.20	98.23	86.15	92.86	91.11	94.66	96.88	94.69	86.87	83.06	90.24	91.11	97.28	97.78	93.55	94.32	95.56	100.00	99.07	98.54	89.36	88.73	94.87	99.15	97.51	96.15	93.10	95.28	91.46	95.74	98.00	2.25	0.247593	0.704346
K	cassette	PBDC1	chrX	+	chrX:75395449-75397450	chrX:75395449-75396715;chrX:75396828-75397450		chrX:75396716-75396827			87.50	100.00	100.00	92.31	94.83	94.12	96.55	94.44	92.86	93.24	95.24	94.87	100.00	91.89	97.37	92.68	90.12	95.00	100.00	92.59	92.68	92.68	98.39	100.00	100.00	100.00	93.94	100.00	91.38	91.89	90.91	95.24	96.77	90.48	93.88	88.89	100.00	92.24	-7.76	0.014971	0.369835
K	cassette	KEAP1	chr19	-	chr19:10597495-10600323	chr19:10597495-10599867;chr19:10600045-10600323		chr19:10599868-10600044			98.11	100.00	100.00	100.00	95.90	100.00	100.00	100.00	96.97	94.50	96.63	100.00	100.00	100.00	100.00	96.90	100.00	100.00	100.00	100.00	97.85	98.75	98.31	100.00	100.00	100.00	100.00	100.00	94.34	100.00	100.00	98.96	96.92	95.15	97.17	97.54	100.00	100.00	0.00	0.750083	0.919736
K	intron_retention	RGL2	chr6	-	chr6:33261302-33261380				chr6:33261301-33261302;chr6:33261380-33261381		18.75	20.00	22.58	10.00	27.03	NA	3.57	NA	9.09	NA	0.00	NA	3.33	0.00	16.67	NA	9.09	NA	24.14	23.08	18.75	36.36	24.49	16.67	40.00	15.15	22.22	NA	29.41	NA	39.13	23.21	20.59	19.23	28.57	12.00	20.30	18.75	-1.55	0.945862	1.000000
N	alternative_acceptor	CD33	chr19	+	chr19:51738509-51738785;chr19:51738509-51738849	chr19:51738509-51738772		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		0.00	1.90	3.08	NA	0.00	NA	0.93	0.00	0.00	2.22	0.97	0.00	2.02	NA	0.00	0.00	2.33	0.00	2.86	8.70	4.44	0.00	3.85	0.00	0.00	4.35	0.00	0.00	3.39	3.23	6.67	0.00	2.38	2.22	0.00	0.00	1.96	4.35	2.39	0.270898	0.709013
N	jcn_only_AD	MADD	chr11	+	chr11:47317506-47330141	chr11:47317607-47330141		chr11:47317506-47317606	chr11:47317505-47317506		100.00	91.30	97.30	NA	100.00	NA	100.00	97.87	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.08	100.00	100.00	NA	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	NA	92.11	100.00	NA	98.11	100.00	100.00	100.00	98.94	-1.06	0.966393	0.982488
K	intron_retention	PAF1	chr19	-	chr19:39877440-39878978				chr19:39877439-39877440;chr19:39878978-39878979		5.17	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	2.33	1.45	0.00	0.00	0.00	5.36	0.00	1.92	0.00	0.00	0.00	5.19	2.74	2.00	5.41	2.63	4.88	1.00	1.17	0.17	0.669461	1.000000
K	intron_retention	LUC7L3	chr17	+	chr17:48828056-48829560				chr17:48828055-48828056;chr17:48829560-48829561		43.40	47.79	45.56	36.67	48.39	16.67	5.41	13.33	17.86	4.84	4.65	6.90	13.21	13.64	20.00	8.47	2.86	3.70	37.50	28.89	32.86	37.84	38.57	48.00	40.70	50.00	58.21	23.68	37.50	25.00	29.41	36.92	31.08	28.30	38.16	41.86	34.29	29.15	-5.14	0.991746	1.000000
N	alternative_donor	CARD16	chr11	-	chr11:104915386-104915522;chr11:104915386-104915917	chr11:104915386-104916017		chr11:104915523-104915917;chr11:104915918-104916017	chr11:104915917-104915918;chr11:104916017-104916018		85.19	96.00	87.10	82.35	95.65	88.24	100.00	95.24	100.00	92.31	95.65	92.00	100.00	93.33	NA	81.25	95.65	93.75	100.00	NA	100.00	100.00	100.00	89.66	100.00	91.89	94.59	87.80	96.88	91.53	94.74	94.74	100.00	90.00	NA	94.44	100.00	93.33	-6.67	0.012992	0.240572
K	alternative_acceptor	ELOF1	chr19	-	chr19:11664626-11664825	chr19:11664631-11664825		chr19:11664626-11664630	chr19:11664625-11664626		8.33	1.14	2.67	0.00	1.15	0.00	0.00	0.00	0.00	0.00	1.14	0.00	1.67	0.00	2.56	1.43	1.27	2.94	2.63	3.64	3.12	2.63	2.73	2.78	5.26	5.56	4.55	7.14	2.63	2.17	8.75	6.31	4.05	3.03	4.23	2.22	2.15	4.60	2.45	0.311501	0.709013
K	intron_retention	VIMP	chr15	-	chr15:101814887-101815459				chr15:101814886-101814887;chr15:101815459-101815460		0.00	5.26	0.88	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	2.22	2.53	1.60	NA	1.22	1.35	0.00	0.00	1.15	1.59	0.00	0.00	0.00	0.91	1.43	0.00	0.00	0.00	0.665070	1.000000
N	alternative_donor	INPPL1	chr11	+	chr11:71941029-71941164	chr11:71941064-71941164		chr11:71941029-71941063	chr11:71941028-71941029		94.12	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
K	intron_retention		chrX	+	chrX:153670142-153670457				chrX:153670141-153670142;chrX:153670457-153670458		5.14	10.14	4.04	0.00	1.83	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	2.90	3.23	2.59	3.77	1.54	0.00	1.66	2.97	1.67	0.61	3.06	5.51	5.81	2.44	2.86	2.23	1.43	1.79	2.28	0.48	0.606036	1.000000
N	alternative_donor	IFI16	chr1	+	chr1:159021880-159024610;chr1:159023417-159024610;chr1:159023988-159024610;chr1:159023494-159024610	chr1:159023515-159024610		chr1:159021880-159023416;chr1:159023417-159023493;chr1:159023494-159023514;chr1:159023515-159023987	chr1:159021879-159021880;chr1:159023416-159023417;chr1:159023493-159023494;chr1:159023514-159023515		94.64	97.50	95.12	100.00	100.00	92.00	100.00	94.12	95.00	100.00	100.00	NA	100.00	93.33	93.75	100.00	100.00	NA	100.00	94.74	94.87	94.74	94.74	96.77	100.00	93.65	94.12	97.73	100.00	98.21	93.10	95.56	100.00	93.33	100.00	93.75	100.00	93.89	-6.11	0.000002	0.001267
N	jcn_only_AA	LAIR1	chr19	-	chr19:54872817-54875901;chr19:54872814-54875901;chr19:54874623-54875901	chr19:54872851-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		2.63	3.39	5.28	0.00	5.17	0.00	4.04	3.46	3.88	2.55	3.59	4.17	1.60	4.28	3.05	2.49	3.00	1.64	0.00	2.69	3.62	1.33	4.89	6.52	0.00	3.57	3.08	4.76	4.44	3.09	4.04	3.33	0.00	2.44	5.31	3.70	0.80	3.51	2.71	0.048800	0.663989
K	intron_retention	MYL6	chr12	+	chr12:56553407-56553808				chr12:56553406-56553407;chr12:56553808-56553809		90.52	100.00	100.00	89.64	90.10	89.35	91.57	89.64	90.58	90.17	89.81	90.48	91.55	90.85	90.11	91.95	89.74	89.47	95.54	95.94	95.51	92.07	90.83	93.00	92.10	90.74	91.41	92.32	90.32	90.88	96.23	95.94	96.02	88.48	89.47	89.11	93.82	90.79	-3.03	0.476382	1.000000
N	jcn_only_AA		chr17	+	chr17:40666479-40666561;chr17:40666479-40668789	chr17:40666479-40673044		chr17:40666562-40668789;chr17:40668790-40673044	chr17:40668789-40668790;chr17:40673044-40673045		73.81	90.48	73.68	NA	87.50	NA	94.12	89.66	76.92	100.00	100.00	NA	94.20	86.96	72.73	86.67	96.10	NA	NA	77.42	70.00	76.92	100.00	70.00	56.25	62.50	88.89	75.00	97.22	NA	69.23	80.00	NA	84.31	88.00	84.21	92.30	75.62	-16.69	0.516295	0.760908
N	jcn_only_AD	TM4SF19	chr3	-	chr3:196050869-196051145;chr3:196050869-196051311	chr3:196050869-196051141		chr3:196051142-196051145;chr3:196051146-196051311	chr3:196051145-196051146;chr3:196051311-196051312		95.24	100.00	NA	89.25	92.73	92.31	93.70	94.25	91.80	89.40	90.89	89.86	94.20	100.00	NA	89.09	90.00	86.87	92.11	88.89	91.04	89.30	93.55	88.35	86.67	81.82	76.92	91.35	91.82	92.75	95.24	87.50	88.80	88.89	89.31	92.31	92.91	94.75	1.84	0.998389	0.999368
K	intron_retention		chr19	-	chr19:55828335-55831406				chr19:55828334-55828335;chr19:55831406-55831407		6.09	18.75	8.03	7.69	8.82	21.43	1.59	0.79	0.00	0.00	0.00	0.00	2.67	0.84	2.38	0.00	0.00	0.00	11.11	2.78	9.21	0.00	11.11	3.70	47.62	5.26	7.48	7.50	17.07	6.52	1.45	7.09	21.74	6.25	10.87	9.17	14.93	2.11	-12.81	0.779798	1.000000
N	alternative_acceptor	TIAL1	chr10	-	chr10:121335304-121336122	chr10:121335325-121336122		chr10:121335304-121335324	chr10:121335303-121335304		0.00	0.00	1.61	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.99	0.00	0.00	0.00	6.25	0.00	1.32	1.85	1.12	0.00	2.63	2.41	1.87	2.08	1.72	0.00	0.53	0.00	-0.53	0.348983	0.709013
K	alternative_donor	RIC8A	chr11	+	chr11:213419-214229	chr11:213498-214229		chr11:213419-213497	chr11:213418-213419		1.15	5.56	4.55	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	1.30	1.72	1.92	1.23	0.00	0.00	2.67	2.78	0.00	1.15	0.00	2.56	3.57	0.00	1.75	1.39	2.53	0.00	1.23	1.23	0.911305	0.981916
N	jcn_only_AD	MRPS16	chr10	-	chr10:75011782-75012289;chr10:75011782-75012227;chr10:75011782-75011877;chr10:75011782-75012016;chr10:75011782-75012475	chr10:75011782-75011981		chr10:75011878-75011981;chr10:75011982-75012016;chr10:75012017-75012227;chr10:75012228-75012289;chr10:75012290-75012475	chr10:75011981-75011982;chr10:75012016-75012017;chr10:75012227-75012228;chr10:75012289-75012290;chr10:75012475-75012476		0.00	0.00	0.00	0.00	0.00	0.00	2.20	0.00	0.00	3.64	2.86	0.00	1.12	0.00	0.00	1.59	5.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.201812	0.657607
K	intron_retention	LYPLA2	chr1	+	chr1:24120421-24120552				chr1:24120420-24120421;chr1:24120552-24120553		4.76	1.59	4.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	5.00	3.85	3.49	0.00	2.56	0.00	2.78	0.00	2.00	4.55	2.00	7.27	0.00	2.63	2.78	6.38	0.00	1.00	1.00	0.710608	1.000000
N	alternative_acceptor		chr14	+	chr14:23240558-23240656;chr14:23240558-23240692	chr14:23240558-23240642		chr14:23240643-23240656;chr14:23240657-23240692	chr14:23240656-23240657;chr14:23240692-23240693		100.00	93.89	100.00	100.00	99.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.36	92.86	97.10	100.00	97.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	82.61	93.83	89.29	100.00	100.00	97.96	96.94	100.00	3.06	0.895528	0.963205
K	intron_retention		chr11	+	chr11:67200514-67200596				chr11:67200513-67200514;chr11:67200596-67200597		0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.34	4.92	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	MED8	chr1	-	chr1:43853279-43853980;chr1:43853301-43853980	chr1:43853319-43853980		chr1:43853279-43853300;chr1:43853301-43853318	chr1:43853278-43853279;chr1:43853300-43853301		96.77	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.14	100.00	100.00	96.97	97.78	98.15	97.37	NA	NA	95.83	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	NA	100.00	100.00	100.00	100.00	98.48	-1.52	0.079923	0.663989
N	jcn_only_AA	TMEM106A	chr17	+	chr17:37071400-37082024	chr17:37071400-37074857		chr17:37074858-37082024	chr17:37082024-37082025		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	cassette	SUPT5H	chr19	+	chr19:39948381-39949457	chr19:39948381-39948933;chr19:39948946-39949457		chr19:39948934-39948945			88.00	82.35	80.20	NA	70.00	NA	95.45	94.92	81.00	92.45	93.22	96.88	97.87	96.67	89.38	93.62	94.23	96.67	66.67	84.85	78.95	71.43	83.10	92.86	92.31	77.08	72.31	82.35	80.56	86.96	63.64	56.48	75.00	71.43	65.62	77.22	87.33	86.42	-0.91	0.918615	0.978689
K	intron_retention	SDSL	chr12	+	chr12:113872028-113873133				chr12:113872027-113872028;chr12:113873133-113873134		2.63	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.17	1.79	0.00	0.00	NA	1.56	2.94	0.00	0.00	0.00	0.00	0.00	0.78	0.78	0.484801	1.000000
K	intron_retention		chr11	+	chr11:71712599-71712829				chr11:71712598-71712599;chr11:71712829-71712830		4.55	4.76	5.88	0.00	5.33	0.00	0.83	0.00	1.66	0.75	1.92	0.72	0.98	0.59	3.74	0.00	1.83	0.65	2.86	3.70	1.69	2.02	2.95	3.45	9.09	4.39	5.88	3.12	3.97	3.70	1.59	2.68	0.00	3.36	4.14	3.37	1.92	2.65	0.73	0.990561	1.000000
K	alternative_last_exon	VPS18	chr15	+	chr15:41191197-41191369;chr15:41191197-41194813	chr15:41191197-41191341	chr15:41194814-41196173	chr15:41191342-41193212			64.71	42.86	54.17	NA	14.29	NA	96.00	90.00	93.75	96.77	97.22	93.75	96.00	88.89	94.44	96.55	97.22	78.57	NA	60.00	30.00	50.00	52.50	46.67	5.75	64.71	50.00	NA	65.00	NA	40.00	47.62	10.53	76.19	74.07	65.38	42.86	64.71	21.85	0.437377	0.591652
N	alternative_donor	MPG	chr16	+	chr16:133203-135399	chr16:133256-135399		chr16:133203-133255	chr16:133202-133203		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.57	100.00	100.00	NA	100.00	NA	100.00	100.00	96.15	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	PSMD4	chr1	+	chr1:151238598-151238783				chr1:151238597-151238598;chr1:151238783-151238784		20.00	21.74	9.09	5.88	8.33	5.26	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	11.11	5.00	13.16	12.50	18.18	NA	17.39	6.25	10.71	0.00	7.14	5.88	16.00	13.64	18.18	14.29	18.75	15.38	17.39	6.25	-11.14	0.845227	1.000000
N	jcn_only_AA	C19orf66,ILF3	chr19	+	chr19:10202030-10202259;chr19:10202030-10202282;chr19:10202030-10202151;chr19:10202030-10202164	chr19:10202030-10202135		chr19:10202136-10202151;chr19:10202152-10202164;chr19:10202165-10202259;chr19:10202260-10202282	chr19:10202151-10202152;chr19:10202164-10202165;chr19:10202259-10202260;chr19:10202282-10202283		0.00	0.00	13.64	NA	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	4.35	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	SERPINB1	chr6	-	chr6:2836225-2836341;chr6:2833934-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2836258-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		79.87	100.00	85.61	97.39	100.00	97.91	91.25	91.76	90.62	95.61	96.46	97.70	90.82	92.34	92.01	90.52	100.00	96.77	81.48	94.25	87.20	96.33	89.81	97.21	52.50	88.13	88.26	98.26	100.00	99.25	86.17	89.16	83.17	95.33	99.32	96.31	87.00	89.94	2.95	0.460696	0.722330
N	alternative_donor	EIF3K	chr19	+	chr19:39109968-39110976;chr19:39109864-39110976;chr19:39109939-39110976;chr19:39109943-39110976	chr19:39109958-39110976		chr19:39109864-39109938;chr19:39109939-39109942;chr19:39109943-39109957;chr19:39109958-39109967	chr19:39109863-39109864;chr19:39109938-39109939;chr19:39109942-39109943;chr19:39109957-39109958		4.76	4.55	10.00	4.76	3.41	2.22	3.33	0.00	0.00	2.74	2.22	3.45	2.04	0.00	0.00	3.92	1.90	0.00	2.63	5.56	4.08	4.26	3.57	0.00	2.78	NA	9.52	4.55	3.75	0.00	0.00	4.76	6.76	3.64	5.08	4.11	3.05	0.00	-3.05	0.305944	0.650093
N	jcn_only_AD		chr9	-	chr9:140006683-140007200;chr9:140006683-140007257;chr9:140006683-140007171	chr9:140006683-140007196		chr9:140007172-140007196;chr9:140007197-140007200;chr9:140007201-140007257	chr9:140007196-140007197;chr9:140007200-140007201;chr9:140007257-140007258		95.65	98.07	96.91	97.58	97.65	100.00	99.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.74	95.52	97.59	97.18	98.04	96.55	99.13	100.00	99.14	100.00	99.44	99.58	96.60	91.07	96.88	95.34	98.62	97.94	98.60	98.30	-0.30	0.688366	0.841783
N	cassette	CEP250	chr20	+	chr20:34092834-34095863	chr20:34092834-34095566;chr20:34095681-34095863		chr20:34095567-34095680			100.00	100.00	80.77	100.00	88.24	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	79.17	89.47	86.67	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	C19orf43	chr19	-	chr19:12842236-12845126	chr19:12842372-12845126		chr19:12842236-12842371	chr19:12842235-12842236		5.93	6.59	4.86	3.09	6.29	4.24	0.00	0.93	0.82	1.02	1.12	0.00	0.64	2.27	0.74	1.09	0.00	0.74	6.40	5.88	4.43	4.35	3.21	6.15	8.74	6.38	5.38	3.09	2.44	3.31	9.28	13.18	9.15	5.88	3.45	5.38	6.50	5.90	-0.59	0.946162	0.987146
N	alternative_acceptor	ANKFY1	chr17	-	chr17:4070488-4072491;chr17:4067468-4072491	chr17:4071206-4072491		chr17:4067468-4070487;chr17:4070488-4071205	chr17:4067467-4067468;chr17:4070487-4070488		92.59	96.88	97.30	NA	81.82	95.00	96.83	95.74	93.02	96.43	92.31	97.96	98.44	94.94	97.30	89.74	94.34	93.02	85.00	96.83	61.90	93.75	89.74	94.87	86.67	90.91	96.55	90.62	93.10	91.23	95.00	96.77	85.00	94.44	94.44	93.67	91.75	94.97	3.22	0.346872	0.709013
K	jcn_only_AA	CNBP	chr3	-	chr3:128890121-128890288;chr3:128890124-128890288;chr3:128890153-128890288	chr3:128890127-128890288		chr3:128890121-128890123;chr3:128890124-128890126;chr3:128890127-128890152	chr3:128890120-128890121;chr3:128890123-128890124;chr3:128890126-128890127		3.08	0.00	2.83	0.00	3.19	NA	1.40	1.99	1.27	1.50	1.76	3.57	2.72	1.69	1.66	1.81	1.57	3.23	0.00	2.56	3.75	1.66	2.71	2.50	NA	5.19	2.16	0.00	2.73	2.56	1.98	3.02	0.00	2.52	2.41	2.48	0.00	2.27	2.27	0.032662	0.663989
N	jcn_only_AA	SERPINB1	chr6	-	chr6:2836225-2836341;chr6:2836258-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2833934-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		15.26	0.00	10.98	0.00	0.00	0.00	8.75	8.10	8.89	3.90	3.02	2.20	9.18	7.45	7.99	9.48	0.00	3.12	18.52	0.00	11.59	0.00	10.19	0.00	47.50	10.87	10.87	0.00	0.00	0.00	4.84	4.22	12.87	0.00	0.00	0.00	11.02	7.78	-3.25	0.280497	0.663989
N	cassette	SF3A3	chr1	-	chr1:38444500-38445136	chr1:38444500-38444659;chr1:38444728-38445136		chr1:38444660-38444727			68.42	100.00	77.08	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.67	100.00	88.89	100.00	90.24	88.89	NA	100.00	100.00	88.89	100.00	100.00	66.67	82.35	69.23	100.00	88.89	100.00	100.00	84.21	-15.79	0.481638	0.772079
K	jcn_only_AA	DERL2	chr17	-	chr17:5378110-5383373	chr17:5381320-5383373		chr17:5378110-5381319	chr17:5378109-5378110		1.33	0.00	3.85	0.00	4.05	0.00	1.69	0.00	4.17	0.00	0.00	3.92	2.13	0.00	0.00	2.63	0.00	2.17	0.00	3.17	2.08	3.17	2.47	1.39	0.00	0.00	3.30	0.00	0.00	0.00	0.00	4.04	0.00	3.08	1.49	7.87	0.00	0.00	0.00	0.868967	0.949094
N	alternative_acceptor		chr3	+	chr3:52539953-52540026;chr3:52539953-52540075	chr3:52539953-52540185		chr3:52540027-52540075;chr3:52540076-52540185	chr3:52540075-52540076;chr3:52540185-52540186		97.37	93.17	96.00	100.00	96.97	100.00	99.68	100.00	100.00	100.00	99.80	100.00	99.38	100.00	100.00	100.00	99.82	100.00	94.94	100.00	NA	99.12	98.04	99.40	94.01	100.00	96.77	100.00	99.25	100.00	100.00	97.37	94.12	100.00	98.76	99.75	94.53	100.00	5.47	0.024554	0.546324
K	coord_cassette	DGUOK	chr2	+	chr2:74174034-74185272	chr2:74174034-74177711;chr2:74177860-74184251;chr2:74184368-74185272		chr2:74177712-74177859;chr2:74184252-74184367			23.17	27.01	22.12	36.00	37.19	24.29	37.84	41.67	28.57	42.11	42.86	41.18	39.58	42.86	34.55	45.83	41.67	29.41	21.50	24.56	22.22	46.15	38.71	33.33	23.53	28.26	29.41	54.17	45.28	45.45	17.24	22.64	22.73	36.96	32.20	30.36	25.27	26.41	1.14	0.866175	0.955165
N	jcn_only_AD	DNAJB12	chr10	-	chr10:74094376-74095537;chr10:74094376-74095591;chr10:74094376-74095543	chr10:74094376-74095360		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		0.00	0.00	3.92	0.00	0.00	1.90	3.57	0.00	4.65	8.89	0.00	0.00	2.44	2.56	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	3.12	6.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.479252	0.726209
K	cassette	GADD45A	chr1	+	chr1:68151222-68152032	chr1:68151222-68151707;chr1:68151810-68152032		chr1:68151708-68151809			93.94	92.31	89.47	NA	NA	NA	100.00	100.00	99.40	100.00	NA	100.00	92.00	100.00	99.63	100.00	NA	100.00	85.71	93.55	87.10	93.94	80.00	100.00	NA	100.00	96.67	NA	NA	100.00	91.43	91.50	82.61	88.24	95.45	90.70	92.00	96.97	4.97	0.129518	0.709176
K	alternative_donor	RPP21,TRIM39-RPP21	chr6	+	chr6:30314335-30314489	chr6:30314342-30314489		chr6:30314335-30314341	chr6:30314334-30314335		5.00	2.38	3.70	3.85	2.47	2.99	0.00	NA	0.00	0.00	3.57	0.00	4.17	NA	5.26	8.70	3.85	10.00	2.11	0.00	2.86	6.67	5.41	0.00	5.43	7.14	0.00	5.26	3.23	4.55	5.00	4.65	2.24	0.00	3.45	0.00	2.31	5.00	2.69	0.403163	0.667062
K	intron_retention	CAPNS1	chr19	+	chr19:36637193-36641215				chr19:36637192-36637193;chr19:36641215-36641216		97.14	98.32	96.49	99.14	97.37	99.31	97.00	96.67	97.50	97.14	98.94	98.63	99.06	98.21	96.15	95.45	95.79	98.63	98.39	91.38	97.62	94.83	96.99	95.95	100.00	94.44	95.71	97.22	96.00	97.37	94.20	94.64	98.40	95.65	98.73	96.62	98.40	95.56	-2.84	0.229350	1.000000
K	alternative_acceptor	GMPR2	chr14	+	chr14:24707612-24707832;chr14:24707612-24707802	chr14:24707612-24707794		chr14:24707795-24707802;chr14:24707803-24707832	chr14:24707802-24707803;chr14:24707832-24707833		100.00	100.00	95.83	NA	88.89	NA	86.67	95.00	83.33	100.00	96.00	81.82	89.19	89.29	100.00	72.73	85.71	NA	93.33	100.00	88.89	NA	87.50	NA	100.00	85.19	92.86	NA	92.86	100.00	100.00	92.31	83.33	NA	88.89	NA	91.26	97.50	6.24	0.479958	0.779404
K	alternative_acceptor	HK3	chr5	-	chr5:176318193-176318388	chr5:176318281-176318388		chr5:176318193-176318280	chr5:176318192-176318193		2.53	4.17	8.57	NA	0.00	NA	0.00	1.10	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.08	0.00	NA	3.45	0.00	0.00	1.49	7.32	0.00	4.44	0.00	0.00	4.35	0.00	3.45	3.92	2.08	0.00	1.29	1.29	0.709691	0.890280
N	alternative_donor	ARPC3	chr12	-	chr12:110883357-110888059	chr12:110883357-110887999		chr12:110888000-110888059	chr12:110888059-110888060		0.13	0.99	0.26	0.90	0.74	4.42	0.16	0.20	0.14	0.15	0.17	0.15	0.20	0.21	0.16	0.17	0.15	0.07	0.68	0.55	0.22	0.00	0.25	0.00	7.02	0.28	0.14	0.41	0.14	0.70	0.17	0.15	0.29	0.18	0.16	0.39	0.48	0.21	-0.28	0.290979	0.650093
K	jcn_only_AA	TRPM2	chr21	+	chr21:45845711-45846582	chr21:45845711-45846542		chr21:45846543-45846582	chr21:45846582-45846583		94.64	98.67	100.00	100.00	95.12	NA	96.88	85.19	92.86	100.00	92.86	92.86	98.08	97.73	100.00	100.00	90.74	100.00	95.65	94.00	88.89	100.00	95.65	100.00	100.00	100.00	98.25	89.66	100.00	90.48	94.12	100.00	95.83	94.74	94.85	94.06	97.48	94.38	-3.10	0.186240	0.663989
K	intron_retention	TMEM55B	chr14	-	chr14:20926506-20926747				chr14:20926505-20926506;chr14:20926747-20926748		95.31	92.86	94.74	100.00	95.16	100.00	96.08	100.00	91.11	100.00	100.00	100.00	100.00	100.00	91.38	100.00	100.00	92.31	100.00	92.73	100.00	96.88	96.30	100.00	100.00	100.00	95.52	100.00	100.00	100.00	97.65	97.67	96.49	90.24	96.49	93.33	98.25	98.83	0.58	0.914930	1.000000
K	intron_retention	CARS	chr11	-	chr11:3023284-3023770				chr11:3023283-3023284;chr11:3023770-3023771		9.52	1.92	8.70	14.71	10.94	11.11	0.00	10.53	8.45	8.00	9.68	6.67	0.00	7.41	10.45	12.50	5.41	20.00	9.18	8.93	4.67	11.11	11.67	4.00	8.82	7.69	8.11	20.00	9.09	9.09	7.14	8.86	4.21	8.11	10.00	18.18	3.06	8.31	5.25	0.132892	1.000000
N	alternative_donor	TBCB	chr19	+	chr19:36613076-36616352;chr19:36612613-36616352;chr19:36612621-36616352	chr19:36612572-36616352		chr19:36612572-36612612;chr19:36612613-36612620;chr19:36612621-36613075	chr19:36612571-36612572;chr19:36612612-36612613;chr19:36612620-36612621		0.00	2.27	11.11	4.35	5.13	6.25	0.00	10.71	5.88	5.71	7.14	3.85	4.55	0.00	4.76	6.98	4.55	5.41	0.00	16.13	7.69	0.00	0.00	0.00	0.00	2.78	6.12	8.33	2.00	4.55	12.50	7.41	6.98	0.00	0.00	7.32	1.14	6.75	5.61	0.172034	0.563271
K	intron_retention		chr1	+	chr1:16054853-16055163				chr1:16054852-16054853;chr1:16055163-16055164		3.70	3.39	4.23	0.00	3.57	NA	0.00	0.00	0.00	1.41	0.00	0.00	2.50	2.17	2.94	0.93	1.64	0.00	5.88	4.11	8.00	1.47	5.56	3.26	0.00	1.82	5.26	3.57	6.25	2.13	5.13	3.23	0.00	2.44	5.83	2.19	1.25	2.94	1.69	0.855444	1.000000
K	intron_retention	SART3	chr12	-	chr12:108917412-108918092				chr12:108917411-108917412;chr12:108918092-108918093		7.69	0.00	2.56	NA	0.00	NA	0.00	0.00	0.00	4.17	0.00	0.00	3.57	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	5.88	4.35	0.00	0.00	4.26	4.55	0.00	2.94	2.86	0.00	0.00	0.00	0.995985	1.000000
K	jcn_only_AD	HERPUD1	chr16	+	chr16:56974001-56976043	chr16:56974158-56976043		chr16:56974001-56974157	chr16:56974000-56974001		100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.86	100.00	97.37	98.88	100.00	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AA	PPP1R12C	chr19	-	chr19:55606969-55607234	chr19:55606972-55607234		chr19:55606969-55606971	chr19:55606968-55606969		51.67	54.72	59.32	57.14	51.28	NA	58.82	57.89	60.87	NA	61.11	NA	63.41	57.14	56.25	60.00	66.67	NA	58.33	56.36	53.33	58.82	60.00	64.71	66.67	52.31	58.44	54.17	57.89	66.67	50.00	60.38	67.86	41.67	66.00	65.85	61.11	54.34	-6.78	0.017120	0.537091
K	alternative_acceptor	MED25	chr19	+	chr19:50339664-50341836	chr19:50339664-50340103		chr19:50340104-50341836	chr19:50341836-50341837		36.84	100.00	37.50	NA	NA	100.00	20.00	15.91	18.75	NA	NA	NA	25.00	16.67	14.29	27.27	15.38	NA	100.00	37.50	100.00	NA	36.36	NA	100.00	27.50	33.33	NA	NA	46.15	43.48	38.46	92.86	40.00	NA	33.33	96.43	32.17	-64.26	0.041815	0.568546
K	intron_retention	WDR83OS	chr19	-	chr19:12779240-12779333				chr19:12779239-12779240;chr19:12779333-12779334		2.40	2.25	2.78	2.45	2.21	1.45	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.84	1.47	3.00	2.72	1.80	1.88	1.19	0.92	0.00	0.70	0.00	0.00	0.87	6.72	3.26	2.69	2.04	1.82	1.83	1.20	1.20	0.00	0.792357	1.000000
N	jcn_only_AD	PRKCSH	chr19	+	chr19:11558323-11558507;chr19:11558413-11558507	chr19:11558434-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		40.91	62.86	52.38	41.67	47.83	56.25	42.22	47.83	66.67	45.95	44.44	42.86	49.21	38.89	52.38	47.83	55.56	60.87	58.33	52.17	48.65	64.29	57.89	50.00	52.94	40.00	68.42	68.18	51.28	43.75	57.89	51.61	59.09	52.63	56.52	54.05	55.63	44.37	-11.27	0.105615	0.644689
N	jcn_only_AD	NDUFB1	chr14	-	chr14:74756822-74757044	chr14:74756822-74756993		chr14:74756994-74757044	chr14:74757044-74757045		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.15	100.00	94.44	100.00	100.00	100.00	96.55	85.71	97.56	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	alternative_donor	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095537;chr10:74094376-74095591	chr10:74094376-74095543		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		0.00	0.00	4.26	10.00	6.52	5.08	12.50	6.25	8.11	12.90	9.76	8.70	0.00	6.90	7.89	14.29	12.50	11.11	3.70	3.70	8.33	0.00	10.81	0.00	4.08	8.00	0.00	0.00	0.00	9.68	0.00	0.00	2.04	7.69	5.26	7.69	2.87	4.97	2.10	0.862863	0.964680
N	alternative_last_exon	KLF16	chr19	-	chr19:1828631-1863039	chr19:1854760-1863039	chr19:1826877-1828630	chr19:1852398-1854759			94.74	94.64	96.55	100.00	97.37	NA	95.24	90.91	96.88	89.58	97.50	NA	95.00	88.89	96.15	86.21	93.75	NA	96.55	90.91	95.65	83.33	96.08	NA	88.89	73.68	96.15	86.67	90.00	NA	NA	94.74	96.43	95.00	95.00	NA	95.12	90.91	-4.21	0.147115	0.353075
N	alternative_acceptor	SUGP2	chr19	-	chr19:19102350-19104446;chr19:19101959-19104446	chr19:19102552-19104446		chr19:19101959-19102349;chr19:19102350-19102551	chr19:19101958-19101959;chr19:19102349-19102350		43.48	25.25	35.14	36.59	25.00	26.47	NA	NA	NA	NA	NA	NA	37.50	NA	41.67	NA	NA	NA	29.33	42.86	29.17	39.13	31.91	33.33	10.75	42.86	28.21	28.57	31.91	35.29	23.81	33.33	21.13	24.24	27.50	28.00	25.25	42.86	17.61	0.080862	0.585944
N	jcn_only_AD	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677171-197677806;chr3:197677631-197677806	chr3:197677093-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		85.71	92.81	85.03	81.36	88.34	85.93	95.22	89.13	87.93	89.55	90.65	90.52	95.73	90.48	94.69	87.76	88.00	95.00	80.92	76.47	81.45	79.49	85.13	82.14	92.12	80.39	85.71	87.96	96.15	92.19	60.00	74.38	82.02	78.86	85.95	85.82	92.47	83.05	-9.42	0.114862	0.646283
K	intron_retention	PTBP1	chr19	+	chr19:810621-810693				chr19:810620-810621;chr19:810693-810694		6.19	0.00	3.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.19	0.00	2.59	2.48	1.61	0.00	1.27	5.26	0.00	0.00	0.00	12.79	9.30	8.33	1.67	2.38	0.66	0.00	2.23	2.23	0.646412	1.000000
N	alternative_acceptor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24680816-24680885;chr14:24680713-24680885;chr14:24680799-24680885;chr14:24680788-24680885	chr14:24680719-24680885		chr14:24680713-24680718;chr14:24680719-24680787;chr14:24680788-24680798;chr14:24680799-24680815	chr14:24680712-24680713;chr14:24680718-24680719;chr14:24680787-24680788;chr14:24680798-24680799		6.94	9.47	3.61	2.44	2.15	5.36	2.56	6.06	2.56	4.00	2.44	6.67	5.13	3.23	5.56	3.70	2.67	0.00	11.58	7.14	13.21	6.25	5.88	7.32	1.41	7.27	6.94	3.70	5.65	2.53	9.09	7.59	9.89	3.28	10.53	6.94	7.30	7.04	-0.26	0.979030	0.994572
N	alternative_donor	ANKRD13D	chr11	+	chr11:67067971-67068460;chr11:67067595-67068460	chr11:67068367-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		3.92	7.22	5.33	0.00	4.00	NA	3.12	0.00	0.00	NA	3.03	NA	6.25	0.00	6.67	NA	2.50	NA	4.58	4.62	4.00	0.00	5.43	0.00	5.65	3.57	7.21	0.00	7.69	NA	2.63	5.22	4.59	0.00	7.41	0.00	5.12	3.10	-2.02	0.022282	0.287553
K	cassette	EXOSC1	chr10	-	chr10:99197033-99198426	chr10:99197033-99197456;chr10:99197508-99198426		chr10:99197457-99197507			100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	94.29	100.00	100.00	100.00	100.00	100.00	0.00	0.840717	0.946967
N	alternative_acceptor	PRICKLE4,TOMM6	chr6	+	chr6:41757075-41757268;chr6:41757075-41757246	chr6:41757075-41757305		chr6:41757247-41757268;chr6:41757269-41757305	chr6:41757268-41757269;chr6:41757305-41757306		63.93	70.31	69.75	80.43	77.92	81.46	77.83	77.27	73.91	80.71	81.60	81.90	77.52	81.36	71.88	81.15	81.38	86.90	78.61	70.15	76.18	79.14	78.95	80.33	79.76	75.00	69.37	84.25	83.07	83.02	76.00	72.45	77.96	79.74	77.06	80.70	77.89	75.50	-2.39	0.316353	0.709013
K	intron_retention	PRPF6	chr20	+	chr20:62660845-62663270				chr20:62660844-62660845;chr20:62663270-62663271		2.35	1.58	3.53	2.44	1.30	0.65	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	2.29	0.00	2.05	2.78	1.25	0.00	2.09	0.00	3.26	3.03	1.41	1.75	3.03	3.06	1.58	4.26	3.39	3.70	1.58	0.00	-1.58	0.502952	1.000000
N	jcn_only_AD	GYPC	chr2	+	chr2:127413889-127447830;chr2:127433326-127447830	chr2:127440451-127447830		chr2:127413889-127433325;chr2:127433326-127440450	chr2:127413888-127413889;chr2:127433325-127433326		0.00	0.00	3.64	5.00	0.00	3.33	1.92	0.00	3.08	2.70	1.12	3.90	1.16	2.94	0.00	0.81	0.68	1.83	0.00	0.00	4.92	9.38	2.19	2.78	0.00	2.63	0.98	2.56	0.00	5.48	9.80	6.67	3.77	7.58	5.26	7.28	0.58	1.31	0.73	0.425137	0.687445
N	jcn_only_AD	LIPA	chr10	-	chr10:91007407-91011461;chr10:91007407-91011493;chr10:91007407-91010954;chr10:91007407-91011213;chr10:91007407-91020202;chr10:91007407-91009753;chr10:91007407-91010941;chr10:91007407-91010367	chr10:91007407-91011463		chr10:91009754-91010367;chr10:91010368-91010941;chr10:91010942-91010954;chr10:91010955-91011213;chr10:91011214-91011461;chr10:91011462-91011463;chr10:91011464-91011493;chr10:91011494-91020202	chr10:91010367-91010368;chr10:91010941-91010942;chr10:91010954-91010955;chr10:91011213-91011214;chr10:91011461-91011462;chr10:91011463-91011464;chr10:91011493-91011494;chr10:91020202-91020203		0.00	0.00	5.88	NA	0.00	NA	7.91	9.53	12.42	11.77	11.52	11.97	2.86	2.03	0.00	2.71	3.76	3.94	0.00	1.92	13.33	2.13	2.88	2.19	20.00	7.92	15.15	8.38	5.38	0.00	0.00	13.56	0.00	6.99	7.04	6.48	1.43	1.97	0.54	0.680094	0.835854
N	alternative_donor	ATP6V0B	chr1	+	chr1:44440776-44441471;chr1:44440970-44441471;chr1:44441260-44441471;chr1:44440980-44441471	chr1:44440780-44441471		chr1:44440776-44440779;chr1:44440780-44440969;chr1:44440970-44440979;chr1:44440980-44441259	chr1:44440775-44440776;chr1:44440779-44440780;chr1:44440969-44440970;chr1:44440979-44440980		95.80	97.73	91.30	100.00	98.99	100.00	99.64	99.46	100.00	98.85	99.64	100.00	99.34	99.39	99.38	99.62	99.26	100.00	100.00	93.00	99.15	94.94	95.32	94.67	95.65	94.92	94.16	99.12	96.55	100.00	95.05	89.72	98.00	96.19	95.97	96.48	98.67	95.42	-3.25	0.127648	0.540946
N	cassette	TSPAN4	chr11	+	chr11:847301-862549;chr11:844187-862549	chr11:844187-850287,chr11:847301-850287;chr11:850368-862549		chr11:850288-850367			94.59	93.12	85.71	90.00	88.81	91.43	97.02	90.74	88.51	98.46	97.44	98.79	98.88	94.87	93.10	98.00	98.82	96.86	91.06	92.59	88.37	94.38	94.07	95.76	81.25	87.50	91.35	98.17	93.40	96.40	93.33	91.67	93.67	94.16	94.59	95.09	93.40	92.96	-0.44	0.936145	0.984024
K	intron_retention		chr14	+	chr14:70235614-70235898				chr14:70235613-70235614;chr14:70235898-70235899		10.98	0.00	17.50	0.00	0.00	NA	2.53	2.86	1.54	2.16	3.03	2.22	3.19	2.48	3.23	1.27	2.19	0.00	0.00	14.94	1.89	12.70	9.38	15.31	NA	12.50	11.45	5.19	7.14	3.23	18.97	18.18	0.00	16.47	14.29	17.80	0.00	11.74	11.74	0.047755	1.000000
N	jcn_only_AA		chr7	+	chr7:208977-209193;chr7:208977-218268;chr7:208977-227647	chr7:208977-286380		chr7:209194-218268;chr7:218269-227647;chr7:227648-286380	chr7:218268-218269;chr7:227647-227648;chr7:286380-286381		100.00	80.00	100.00	95.00	93.24	NA	100.00	100.00	100.00	97.85	98.75	100.00	100.00	100.00	100.00	100.00	99.67	100.00	100.00	96.83	85.07	95.77	99.09	100.00	NA	100.00	100.00	94.52	98.33	95.00	100.00	100.00	100.00	98.06	100.00	100.00	100.00	100.00	0.00	0.436528	0.704771
N	alternative_acceptor	CD33,ICAM4	chr19	+	chr19:51738932-51742772;chr19:51738932-51742327	chr19:51738932-51739077		chr19:51739078-51742327;chr19:51742328-51742772	chr19:51742327-51742328;chr19:51742772-51742773		6.67	3.55	19.57	0.00	3.23	0.00	1.41	0.00	3.57	0.00	1.98	0.00	3.74	NA	9.09	2.94	3.61	0.00	2.25	6.67	1.69	0.00	6.06	3.70	2.86	10.71	14.85	15.79	8.70	6.25	0.00	3.45	1.10	2.13	6.41	2.50	2.55	6.67	4.12	0.334548	0.709013
K	alternative_last_exon	GLS,PPP1R21	chr2	+	chr2:191796364-191797382;chr2:191796364-191818290	chr2:191796364-191797441	chr2:191818291-191818352	chr2:191797442-191800015			63.89	55.56	49.15	52.63	68.63	53.49	68.97	66.67	61.90	78.76	87.80	75.24	70.77	67.44	50.72	85.57	84.91	77.92	44.44	60.61	23.08	70.97	74.03	68.42	20.00	50.00	47.37	84.42	81.25	72.12	47.50	42.42	36.84	69.23	62.86	55.67	50.00	62.25	12.25	0.294617	0.491468
K	alternative_last_exon	GAS7	chr17	-	chr17:9820325-9850210	chr17:9846554-9850210	chr17:9820123-9820324	chr17:9846438-9846553			50.67	48.33	57.33	NA	57.14	NA	59.11	60.16	60.00	66.67	67.73	69.50	59.91	61.27	50.00	56.21	69.08	68.50	73.08	59.72	54.55	54.55	57.60	62.35	47.37	59.41	58.57	61.54	55.68	64.41	60.56	68.00	83.33	61.00	56.70	59.76	59.51	59.94	0.43	0.609424	0.748204
K	jcn_only_AA	RNF31,TNFAIP2	chr14	+	chr14:24627221-24627375	chr14:24627221-24627350		chr14:24627351-24627375	chr14:24627375-24627376		93.68	100.00	94.20	100.00	97.30	88.37	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	90.48	100.00	100.00	91.11	92.31	90.79	90.48	93.75	83.87	100.00	90.14	91.67	82.61	90.91	88.46	90.43	94.12	94.92	91.43	100.00	92.50	100.00	93.00	-7.00	0.208184	0.663989
K	intron_retention	COMMD4	chr15	+	chr15:75631686-75632042				chr15:75631685-75631686;chr15:75632042-75632043		10.45	10.61	19.44	7.69	8.57	4.94	1.54	3.33	0.00	0.00	0.00	0.00	3.12	2.56	12.82	0.00	2.74	0.00	5.47	8.00	8.43	6.67	12.00	0.00	7.09	9.26	13.46	3.70	9.09	6.25	5.36	21.15	11.72	6.45	8.20	9.76	6.28	6.68	0.40	0.440859	1.000000
K	jcn_only_AA	GIT2	chr12	-	chr12:110385310-110388971	chr12:110386652-110388971		chr12:110385310-110386651	chr12:110385309-110385310		48.00	86.49	25.00	NA	85.71	NA	19.61	14.29	9.38	34.62	18.46	0.00	30.88	2.78	17.24	35.71	16.42	NA	100.00	23.08	46.15	NA	60.00	NA	NA	31.82	46.15	46.15	52.17	NA	53.33	42.31	81.25	52.00	65.85	41.18	81.25	27.45	-53.80	0.101347	0.663989
K	alternative_acceptor	MBD1	chr18	-	chr18:47796189-47799046;chr18:47796182-47799046	chr18:47797911-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		73.47	68.00	68.66	NA	65.00	NA	60.00	50.00	56.00	47.83	60.00	42.86	61.54	50.00	70.83	60.00	62.50	44.44	100.00	76.19	68.18	67.86	66.67	72.41	NA	63.64	76.47	42.86	59.38	50.00	67.50	74.63	86.67	78.05	73.91	62.96	68.00	65.57	-2.43	0.237165	0.692777
N	alternative_acceptor	DPF2,SCYL1	chr11	+	chr11:65305654-65305912;chr11:65305654-65305917	chr11:65305654-65305740		chr11:65305741-65305912;chr11:65305913-65305917	chr11:65305912-65305913;chr11:65305917-65305918		91.30	95.00	88.89	93.10	93.10	88.89	91.67	92.31	94.12	93.33	100.00	100.00	91.67	86.67	91.67	95.24	93.33	100.00	92.50	93.33	95.92	91.67	95.24	NA	87.30	91.67	92.00	84.62	93.33	95.24	80.00	87.50	86.79	93.33	89.47	94.12	91.67	91.48	-0.19	0.527495	0.810963
K	intron_retention	COASY	chr17	+	chr17:40714238-40714373				chr17:40714237-40714238;chr17:40714373-40714374		100.00	100.00	100.00	NA	NA	NA	100.00	90.62	100.00	93.33	94.29	87.50	94.87	100.00	100.00	95.00	100.00	82.14	NA	100.00	NA	NA	100.00	91.67	100.00	100.00	100.00	92.31	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.965193	1.000000
K	cassette	TTC7A	chr2	+	chr2:47220668-47222274	chr2:47220668-47221495;chr2:47221654-47222274		chr2:47221496-47221653			91.67	100.00	100.00	NA	NA	NA	100.00	96.77	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	91.67	NA	NA	96.77	NA	100.00	95.45	NA	NA	95.65	NA	100.00	87.50	NA	100.00	100.00	NA	100.00	96.11	-3.89	0.044896	0.532947
N	jcn_only_AD	PSME1	chr14	+	chr14:24607609-24607944;chr14:24607770-24607944;chr14:24607613-24607944;chr14:24607327-24607944	chr14:24607778-24607944					2.09	1.05	1.80	3.15	2.36	2.28	1.79	2.54	1.67	1.95	1.24	0.51	1.62	1.71	2.10	2.59	1.94	0.00	1.95	3.32	2.84	2.42	2.23	3.05	2.95	2.78	1.64	1.37	1.69	1.11	2.32	2.70	3.21	5.38	0.00	1.59	1.87	2.43	0.56	0.393877	0.660946
N	alternative_donor	RPL34	chr4	+	chr4:109541958-109543106;chr4:109542102-109543106;chr4:109541757-109543106	chr4:109541869-109543106		chr4:109541757-109541868;chr4:109541869-109541957;chr4:109541958-109542101	chr4:109541756-109541757;chr4:109541868-109541869;chr4:109541957-109541958		9.41	5.05	5.59	4.64	3.74	3.20	3.09	7.55	3.97	9.57	5.84	4.30	3.37	3.70	4.49	3.76	5.88	9.09	6.33	11.86	6.90	6.79	3.92	4.02	2.71	6.15	4.60	3.20	1.89	3.16	10.34	8.12	5.88	7.45	6.84	3.51	4.21	8.48	4.27	0.026683	0.317017
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4095045-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4094497-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		39.25	43.25	40.68	47.13	42.94	48.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	46.41	38.75	60.89	42.86	39.50	44.44	48.06	54.17	44.55	70.73	74.29	69.12	32.71	28.95	42.42	45.10	48.05	45.54	47.23	46.71	-0.52	0.885607	0.961240
K	intron_retention	PSMB4	chr1	+	chr1:151374107-151374292				chr1:151374106-151374107;chr1:151374292-151374293		4.02	0.34	3.41	1.52	0.76	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.76	4.25	1.15	1.55	1.23	2.23	0.82	2.69	1.63	1.05	0.32	0.57	7.14	4.28	2.29	1.50	1.12	1.60	0.55	3.35	2.80	0.203306	1.000000
K	intron_retention	TBC1D17	chr19	+	chr19:50381830-50383535				chr19:50381829-50381830;chr19:50383535-50383536		90.48	28.57	68.66	NA	60.00	94.12	12.00	81.82	50.00	14.29	16.00	NA	21.05	94.29	68.42	31.25	27.78	NA	43.75	85.71	87.50	71.43	76.47	75.61	29.41	94.81	62.32	84.21	48.28	91.18	70.00	50.00	18.18	53.12	84.13	78.79	24.81	88.09	63.28	0.000880	0.920759
N	alternative_acceptor	PREX1	chr20	-	chr20:47305343-47307484	chr20:47305365-47307484		chr20:47305343-47305364	chr20:47305342-47305343		0.00	0.00	1.43	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	2.86	0.00	0.00	NA	3.85	NA	0.00	0.00	0.00	12.50	0.00	5.13	0.00	0.00	NA	0.00	0.00	NA	0.00	2.33	0.00	0.47	0.00	-0.47	0.443575	0.751374
K	cassette	BCL2L12	chr19	+	chr19:50170057-50172107	chr19:50170057-50170275;chr19:50170419-50172107		chr19:50170276-50170418			74.19	43.75	71.79	NA	58.62	NA	94.12	100.00	100.00	NA	86.67	NA	90.32	100.00	100.00	84.62	90.00	NA	53.85	77.27	65.22	NA	66.67	NA	NA	90.00	70.37	NA	72.73	NA	55.00	57.89	44.44	70.00	66.67	66.67	53.85	83.63	29.78	0.228809	0.709176
K	intron_retention	AURKAIP1	chr1	-	chr1:1310171-1310376				chr1:1310170-1310171;chr1:1310376-1310377		52.38	48.89	43.75	37.50	40.54	43.48	8.00	8.33	13.04	13.64	25.00	0.00	18.18	41.67	25.00	20.59	20.83	NA	41.46	52.63	34.78	50.00	52.27	50.00	38.64	40.00	42.11	24.00	33.33	31.82	60.00	54.55	53.49	52.94	58.82	58.82	40.05	47.03	6.98	0.824819	1.000000
K	intron_retention	METTL9	chr16	+	chr16:21636437-21666550				chr16:21636436-21636437;chr16:21666550-21666551		2.41	0.00	2.44	5.56	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	NA	NA	3.33	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	4.17	4.17	0.00	0.00	0.00	3.85	0.00	3.75	3.75	0.441689	1.000000
K	intron_retention	TRAPPC3	chr1	-	chr1:36605768-36614937				chr1:36605767-36605768;chr1:36614937-36614938		1.72	0.00	2.44	3.45	1.56	0.00	0.00	0.00	1.37	2.44	2.97	2.22	2.94	3.51	2.08	3.23	2.50	0.00	0.00	0.00	2.60	0.00	3.41	2.17	0.00	0.00	1.30	4.65	3.33	1.72	0.00	1.18	0.00	8.16	0.00	2.99	0.00	0.00	0.00	0.853633	1.000000
N	alternative_first_exon		chr22	-	chr22:50721311-50721432;chr22:50721311-50721765	chr22:50721311-50721478	chr22:50721766-50721874	chr22:50721479-50721615			94.55	100.00	96.88	NA	100.00	NA	98.45	100.00	100.00	100.00	100.00	100.00	99.28	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	93.75	100.00	NA	100.00	95.70	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.595947	0.707191
K	alternative_acceptor	RAB34	chr17	-	chr17:27043077-27043920	chr17:27043080-27043920		chr17:27043077-27043079	chr17:27043076-27043077		4.17	17.65	12.61	NA	9.09	NA	4.17	5.13	8.11	7.69	4.76	NA	3.70	3.12	6.90	5.88	11.11	8.33	NA	10.34	8.77	NA	4.00	NA	13.33	7.50	10.00	6.67	6.90	0.00	13.79	10.98	9.09	9.09	15.00	21.43	9.09	6.31	-2.78	0.499662	0.791230
K	cassette	UBE2K	chr4	+	chr4:39776554-39779979	chr4:39776554-39779301;chr4:39779431-39779979		chr4:39779302-39779430			100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	97.22	98.82	100.00	100.00	98.44	100.00	97.53	97.96	97.30	100.00	98.21	100.00	97.98	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	98.72	94.92	97.70	100.00	100.00	99.22	100.00	0.78	0.238282	0.709176
K	jcn_only_AA	RENBP	chrX	-	chrX:153208487-153208997	chrX:153208532-153208997		chrX:153208487-153208531	chrX:153208486-153208487		97.78	98.08	100.00	92.86	97.70	100.00	97.96	100.00	100.00	100.00	98.98	100.00	96.93	97.96	100.00	97.12	97.11	100.00	100.00	97.50	96.49	93.10	95.71	100.00	100.00	100.00	100.00	97.37	97.37	100.00	100.00	100.00	100.00	96.92	100.00	100.00	99.04	98.98	-0.06	0.953185	0.984403
K	intron_retention	PPP4C	chr16	+	chr16:30087416-30087635				chr16:30087415-30087416;chr16:30087635-30087636		3.33	2.20	4.90	5.88	2.56	0.00	0.00	1.74	0.00	0.00	0.00	0.00	0.00	0.00	1.90	0.00	0.00	0.00	3.85	2.74	4.12	5.71	2.94	3.39	0.00	2.13	4.21	1.06	0.72	1.28	7.79	10.11	9.43	3.39	1.92	2.22	1.10	2.44	1.33	0.975207	1.000000
N	alternative_acceptor		chr11	+	chr11:67815040-67815122;chr11:67815040-67815133	chr11:67815040-67815113		chr11:67815114-67815122;chr11:67815123-67815133	chr11:67815122-67815123;chr11:67815133-67815134		100.00	100.00	96.21	100.00	98.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.80	100.00	100.00	98.81	100.00	100.00	98.43	96.36	100.00	100.00	100.00	100.00	99.04	94.29	100.00	100.00	97.50	100.00	100.00	0.00	0.889956	0.961426
K	cassette	IRF7	chr11	-	chr11:614038-614475;chr11:613866-614475	chr11:614038-614173,chr11:613866-614173;chr11:614400-614475		chr11:614174-614399			72.50	43.48	51.22	50.94	33.33	49.03	68.42	73.48	79.49	66.07	60.00	82.33	78.57	84.50	82.32	77.24	61.54	85.90	41.67	71.68	47.06	49.02	47.62	56.22	41.67	66.42	59.80	63.28	46.15	67.84	47.02	38.31	13.04	46.34	42.86	47.48	42.58	72.09	29.52	0.081745	0.641134
K	jcn_only_AA	UNC50	chr2	+	chr2:99232997-99234630	chr2:99232997-99234608		chr2:99234609-99234630	chr2:99234630-99234631		0.00	0.00	2.82	0.00	5.41	0.00	2.08	0.00	4.44	0.00	4.00	8.00	1.79	5.56	2.63	0.00	3.08	0.00	5.45	2.08	4.76	9.38	4.84	0.00	NA	4.35	6.06	3.57	2.70	7.55	0.00	2.86	4.35	0.00	0.00	0.00	2.08	1.04	-1.04	0.610752	0.820792
N	alternative_acceptor	KIAA0196	chr8	-	chr8:126044824-126049478;chr8:126048463-126049478	chr8:126044637-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		91.67	97.67	95.83	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.74	93.33	100.00	NA	96.30	96.00	100.00	100.00	98.46	NA	NA	100.00	97.73	100.00	98.18	NA	100.00	97.30	100.00	97.22	98.08	93.75	100.00	100.00	0.00	0.613196	0.853341
K	cassette	HNRNPUL1	chr19	+	chr19:41810167-41812353	chr19:41810167-41811580;chr19:41811773-41812353		chr19:41811581-41811772			100.00	100.00	97.10	NA	100.00	NA	100.00	98.48	97.18	94.03	96.08	96.97	98.13	98.00	98.28	90.91	94.31	94.29	100.00	100.00	100.00	95.83	93.55	100.00	100.00	98.00	96.77	100.00	96.00	94.44	95.00	96.83	100.00	100.00	95.45	95.74	100.00	98.24	-1.76	0.121134	0.709176
K	alternative_last_exon	HLA-F	chr6	+	chr6:29693821-29705898;chr6:29693821-29694179	chr6:29693821-29694659	chr6:29705899-29705965;chr6:29694180-29694303	chr6:29694660-29695073			5.75	5.00	2.17	2.86	5.26	1.36	9.09	9.62	7.35	16.67	17.65	23.73	9.09	8.18	6.72	4.44	NA	22.22	5.71	5.26	3.98	5.00	5.00	8.14	2.25	6.51	3.53	5.88	4.00	3.66	4.61	5.19	4.76	11.11	10.53	9.66	5.36	6.13	0.77	0.628182	0.763478
N	alternative_acceptor	HEXDC	chr17	+	chr17:80399143-80399675	chr17:80399143-80399619		chr17:80399620-80399675	chr17:80399675-80399676		5.41	3.39	15.79	NA	5.88	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	5.13	8.70	0.00	NA	5.88	NA	0.00	2.44	4.55	NA	4.17	9.09	3.70	7.69	2.86	NA	NA	15.38	2.86	3.07	0.21	0.533979	0.815239
K	jcn_only_AD	TCF25	chr16	+	chr16:89954090-89958600	chr16:89954126-89958600		chr16:89954090-89954125	chr16:89954089-89954090		96.83	100.00	98.80	100.00	100.00	NA	96.47	98.31	98.39	98.63	99.05	100.00	98.75	96.77	97.53	98.88	99.11	98.00	95.83	100.00	94.12	94.87	100.00	97.83	96.88	98.15	98.53	100.00	100.00	97.73	91.84	94.62	100.00	97.50	100.00	97.80	97.81	97.49	-0.32	0.479943	0.726209
N	cassette	EIF3H	chr8	-	chr8:117668245-117767904;chr8:117671220-117767904	chr8:117671220-117738254,chr8:117668245-117738254;chr8:117738412-117767904		chr8:117738255-117738411			93.02	100.00	93.75	100.00	96.05	NA	100.00	100.00	92.31	100.00	98.83	100.00	98.71	100.00	100.00	99.32	100.00	100.00	100.00	100.00	95.45	98.59	100.00	97.75	NA	97.78	93.98	100.00	100.00	100.00	96.30	84.72	100.00	100.00	98.15	99.28	100.00	98.89	-1.11	0.163720	0.709176
K	jcn_only_AA	RPLP0	chr12	-	chr12:120636797-120636920	chr12:120636804-120636920		chr12:120636797-120636803	chr12:120636796-120636797		96.97	96.32	98.02	100.00	100.00	100.00	96.87	94.81	95.06	96.43	96.43	96.95	95.79	97.80	96.25	97.30	95.04	95.31	94.91	97.56	96.16	98.09	100.00	100.00	97.87	92.50	97.05	100.00	100.00	100.00	94.74	98.68	95.24	100.00	100.00	100.00	96.06	95.89	-0.17	0.660686	0.848430
N	alternative_donor	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677093-197677806;chr3:197677631-197677806	chr3:197677171-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		4.51	2.30	6.12	6.61	4.57	5.19	1.97	4.65	5.56	4.76	3.82	4.55	1.94	5.00	1.83	5.45	5.04	2.06	6.71	7.02	5.88	6.62	4.90	5.26	3.70	7.84	6.19	4.81	1.65	3.12	12.16	8.76	6.78	7.58	5.43	4.88	3.00	6.01	3.01	0.081441	0.470724
N	jcn_only_AA	PARP4	chr13	-	chr13:25005615-25008532	chr13:25006835-25008532		chr13:25005615-25006834	chr13:25005614-25005615		0.00	0.00	3.77	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.75	7.32	0.00	2.11	0.00	0.00	0.00	1.56	0.00	2.99	0.00	4.26	0.00	6.93	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161962050-161967614;chr1:161966285-161967614;chr1:161948463-161967614	chr1:161954771-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		95.45	94.20	98.83	NA	82.61	NA	96.74	94.80	100.00	96.15	98.61	100.00	100.00	94.27	100.00	100.00	100.00	100.00	61.11	93.25	90.16	100.00	95.51	100.00	NA	94.41	97.96	100.00	95.38	84.62	91.80	99.15	52.94	88.46	94.74	92.86	94.20	94.34	0.14	0.260236	0.663989
N	coord_cassette	BRE	chr2	+	chr2:28521359-28561316	chr2:28521359-28532948;chr2:28533021-28550140;chr2:28550315-28561316		chr2:28532949-28533020;chr2:28550141-28550314			0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	3.57	0.00	NA	4.17	0.00	0.00	5.26	0.00	5.88	0.00	0.00	0.00	11.54	3.45	0.00	0.00	0.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	12.90	0.00	0.00	0.00	0.601500	0.771646
K	intron_retention	RHBDD3	chr22	-	chr22:29656227-29656314				chr22:29656226-29656227;chr22:29656314-29656315		0.00	3.53	0.00	0.00	5.17	1.72	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.75	0.00	1.49	0.00	2.33	0.00	2.17	5.26	0.00	0.00	3.03	0.00	2.70	2.27	4.29	0.00	2.27	0.00	2.85	0.00	-2.85	0.979713	1.000000
K	intron_retention	FKBP1A	chr20	-	chr20:1349684-1350415				chr20:1349683-1349684;chr20:1350415-1350416		100.00	100.00	90.11	100.00	100.00	100.00	91.13	89.66	93.33	87.57	88.79	86.84	92.42	92.31	94.32	86.99	85.09	83.21	99.00	89.58	93.98	100.00	92.08	88.37	100.00	91.67	95.56	100.00	100.00	100.00	88.24	85.94	98.34	94.79	95.51	91.30	98.67	90.66	-8.01	0.364664	1.000000
N	jcn_only_AD	FGD2	chr6	+	chr6:36993985-36995204;chr6:36994102-36995204;chr6:36995111-36995204	chr6:36993715-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		88.68	100.00	NA	NA	NA	NA	97.67	100.00	100.00	NA	100.00	100.00	100.00	93.37	100.00	92.31	100.00	100.00	100.00	93.51	NA	NA	100.00	100.00	NA	91.80	NA	80.77	100.00	89.66	87.04	100.00	100.00	100.00	90.91	88.17	100.00	92.59	-7.41	0.010874	0.256953
K	intron_retention	DDX27	chr20	+	chr20:47860241-47860352				chr20:47860240-47860241;chr20:47860352-47860353		5.56	12.28	12.90	4.55	3.66	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	3.81	5.88	8.06	0.00	1.96	7.69	7.69	0.00	4.35	0.00	7.50	0.00	27.78	12.90	13.64	6.45	8.57	9.09	5.75	5.56	-0.19	0.969324	1.000000
N	jcn_only_AA	MERTK	chr2	+	chr2:112779972-112782717;chr2:112779972-112785927	chr2:112779972-112796927		chr2:112782718-112785927;chr2:112785928-112796927	chr2:112785927-112785928;chr2:112796927-112796928		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	28.57	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	ZNF592	chr15	+	chr15:85343209-85345093	chr15:85343209-85344799		chr15:85344800-85345093	chr15:85345093-85345094		4.17	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	4.35	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.33	4.00	7.14	0.00	4.00	0.00	0.00	0.00	0.421183	0.733210
K	intron_retention		chr1	+	chr1:150936218-150936470				chr1:150936217-150936218;chr1:150936470-150936471		5.26	15.79	2.56	0.00	9.68	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	7.41	0.00	0.00	NA	25.00	5.88	4.76	0.00	3.57	0.00	0.00	7.14	21.43	0.00	5.88	4.00	12.24	0.00	-12.24	0.420579	1.000000
K	intron_retention	LRCH4,RP11-44M6.7	chr7	-	chr7:100176135-100176272				chr7:100176134-100176135;chr7:100176272-100176273		0.00	0.00	3.09	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.00	1.28	0.00	0.00	0.00	2.63	2.63	6.45	0.00	0.00	0.00	0.00	0.50	0.50	0.885099	1.000000
K	cassette	U2AF2	chr19	+	chr19:56166520-56170575	chr19:56166520-56170227;chr19:56170348-56170575		chr19:56170228-56170347			2.13	0.00	1.18	NA	0.00	NA	0.00	1.49	1.06	0.00	0.87	0.00	0.83	3.39	2.08	0.93	0.68	0.00	0.00	5.45	0.00	0.00	2.91	2.22	0.00	3.23	0.00	0.00	0.00	0.00	3.57	1.59	NA	0.00	1.61	1.72	0.00	3.31	3.31	0.002077	0.147524
K	intron_retention		chr1	-	chr1:161011202-161011440				chr1:161011201-161011202;chr1:161011440-161011441		6.33	0.00	5.32	0.00	2.08	NA	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	2.70	1.75	0.00	6.35	8.33	0.00	3.23	4.00	4.26	1.52	4.00	7.79	6.00	3.23	6.38	10.87	7.14	0.00	2.96	2.96	0.304577	1.000000
N	jcn_only_AD	INTS4	chr11	-	chr11:77590174-77594877	chr11:77590174-77592479		chr11:77592480-77594877	chr11:77594877-77594878		5.56	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	8.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention		chr14	+	chr14:105223098-105225764				chr14:105223097-105223098;chr14:105225764-105225765		7.32	3.97	4.92	7.14	2.79	10.10	1.45	0.00	0.00	0.00	1.69	0.00	5.26	7.14	7.32	3.17	2.13	0.00	6.45	4.17	5.00	11.11	5.81	12.50	10.07	0.00	7.35	4.55	6.98	10.34	8.57	8.82	6.67	17.24	6.52	17.14	5.86	5.65	-0.20	0.926378	1.000000
N	cassette	AP5Z1	chr7	+	chr7:4827408-4829462	chr7:4827408-4828470;chr7:4828583-4829462		chr7:4828471-4828582			100.00	100.00	100.00	100.00	95.45	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	87.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr1	-	chr1:153927466-153927540				chr1:153927465-153927466;chr1:153927540-153927541		4.76	0.00	12.77	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	NA	3.23	NA	0.00	8.00	8.33	11.11	6.67	8.77	NA	0.00	NA	10.00	8.20	NA	8.11	12.90	5.13	0.00	4.00	4.00	0.718431	1.000000
N	alternative_donor	TAGLN	chr11	+	chr11:117066632-117073717	chr11:117071059-117073717		chr11:117066632-117071058	chr11:117066631-117066632		85.29	84.38	100.00	NA	88.89	100.00	84.85	89.06	76.92	NA	83.33	84.62	85.19	84.44	100.00	NA	NA	NA	87.50	73.91	NA	NA	81.25	NA	100.00	78.26	70.59	NA	88.24	100.00	100.00	80.00	82.35	63.64	NA	82.35	85.02	84.87	-0.15	0.635875	0.835005
K	intron_retention	PABPC4	chr1	-	chr1:40026795-40027356				chr1:40026794-40026795;chr1:40027356-40027357		4.84	1.50	3.08	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.68	7.69	1.85	1.60	1.32	0.72	0.00	5.36	1.85	0.00	0.76	0.00	6.59	5.38	1.17	1.41	1.57	0.00	0.34	5.10	4.76	0.100961	1.000000
K	alternative_acceptor	CFAP20	chr16	-	chr16:58148825-58149172	chr16:58148960-58149172		chr16:58148825-58148959	chr16:58148824-58148825		3.70	NA	5.41	NA	6.25	NA	0.00	7.69	0.00	0.00	4.00	0.00	0.00	NA	0.00	3.12	0.00	NA	0.00	0.00	3.70	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.210993	0.671156
K	jcn_only_AD	CXXC1	chr18	-	chr18:47810933-47811101	chr18:47810933-47811089		chr18:47811090-47811101	chr18:47811101-47811102		4.35	0.00	4.00	NA	4.08	NA	0.00	3.57	6.45	4.17	0.00	NA	2.78	0.00	3.45	0.00	3.57	NA	5.56	5.77	6.25	8.70	4.35	0.00	0.00	0.00	4.41	10.53	5.26	11.76	5.77	4.40	7.50	12.50	8.89	0.00	1.39	3.96	2.57	0.732551	0.861015
N	alternative_acceptor	ACP2	chr11	-	chr11:47261801-47264273;chr11:47261435-47264273;chr11:47261750-47264273;chr11:47263622-47264273	chr11:47261718-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		4.64	6.61	4.88	0.00	10.48	9.84	5.71	2.77	3.69	6.35	8.94	4.55	5.56	4.21	3.28	5.22	6.58	8.96	5.81	3.24	6.35	6.56	5.97	5.77	15.73	3.72	3.26	5.97	8.40	6.25	4.08	5.95	10.59	4.55	5.17	3.12	6.21	3.90	-2.31	0.040895	0.568546
N	alternative_acceptor	MED25	chr19	+	chr19:50335415-50335564	chr19:50335415-50335534		chr19:50335535-50335564	chr19:50335564-50335565		3.70	5.88	6.38	NA	5.26	8.33	0.00	1.79	0.00	0.00	0.00	0.00	1.85	0.85	0.00	0.00	1.92	1.85	4.76	7.35	4.88	NA	4.55	0.00	15.15	3.80	8.89	7.69	3.70	2.00	4.26	4.35	5.88	7.14	4.76	3.12	5.32	3.75	-1.57	0.428509	0.740679
K	intron_retention	SPSB3	chr16	-	chr16:1828323-1828435				chr16:1828322-1828323;chr16:1828435-1828436		50.00	63.33	64.52	NA	40.00	NA	5.26	10.00	4.55	NA	14.29	NA	15.38	NA	26.92	7.69	0.00	NA	45.45	52.63	43.75	NA	45.83	NA	33.33	46.67	50.00	NA	40.00	NA	66.67	41.03	70.00	60.00	63.64	50.00	39.39	50.00	10.61	0.416837	1.000000
K	intron_retention		chr1	-	chr1:36931802-36932221				chr1:36931801-36931802;chr1:36932221-36932222		97.50	100.00	100.00	100.00	97.01	96.92	97.87	95.83	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	92.86	94.74	94.55	100.00	100.00	100.00	90.00	100.00	100.00	100.00	97.18	95.65	95.83	95.65	94.12	100.00	100.00	100.00	96.00	96.66	0.67	0.887313	1.000000
K	coord_cassette	CLN3	chr16	-	chr16:28499063-28502802	chr16:28499063-28499911;chr16:28499984-28500610;chr16:28500708-28502802		chr16:28499912-28499983;chr16:28500611-28500707			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AA	DUS1L	chr17	-	chr17:80015968-80016216	chr17:80016131-80016216		chr17:80015968-80016130	chr17:80015967-80015968		76.47	89.06	88.57	90.00	87.80	85.71	94.00	NA	95.00	100.00	86.67	88.24	100.00	NA	92.86	93.94	100.00	95.00	81.89	100.00	88.89	88.46	90.20	90.91	87.93	100.00	100.00	91.30	89.13	87.10	100.00	87.18	83.72	81.82	96.43	93.75	88.50	100.00	11.50	0.507454	0.758797
N	alternative_acceptor	FXR1	chr3	+	chr3:180693193-180693909	chr3:180693193-180693892		chr3:180693893-180693909	chr3:180693909-180693910		0.00	1.85	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	6.67	7.14	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	6.67	4.76	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.427746	0.740430
N	jcn_only_AD	CYTH4	chr22	+	chr22:37679083-37688661;chr22:37686501-37688661;chr22:37685931-37688661;chr22:37680847-37688661;chr22:37682292-37688661;chr22:37680152-37688661;chr22:37683679-37688661	chr22:37678630-37688661		chr22:37678630-37679082;chr22:37679083-37680151;chr22:37680152-37680846;chr22:37680847-37682291;chr22:37682292-37683678;chr22:37683679-37685930;chr22:37685931-37686500	chr22:37678629-37678630;chr22:37679082-37679083;chr22:37680151-37680152;chr22:37680846-37680847;chr22:37682291-37682292;chr22:37683678-37683679;chr22:37685930-37685931		98.19	90.62	98.37	NA	100.00	NA	99.43	98.41	96.72	98.96	98.10	97.47	98.53	98.14	96.79	100.00	98.73	100.00	NA	98.29	100.00	100.00	97.47	100.00	100.00	97.84	97.09	94.44	100.00	100.00	100.00	97.90	100.00	100.00	100.00	99.18	99.43	98.24	-1.19	0.695885	0.845069
K	intron_retention		chr3	+	chr3:52282254-52282350				chr3:52282253-52282254;chr3:52282350-52282351		12.82	17.24	16.36	NA	14.71	NA	0.67	1.79	0.00	0.00	2.42	0.00	1.43	6.45	6.45	0.00	4.30	NA	7.69	8.82	7.41	NA	13.64	NA	0.00	12.00	16.67	4.76	8.79	NA	9.09	14.71	0.00	8.70	14.49	NA	1.05	8.96	7.91	0.851569	1.000000
N	jcn_only_AA	UBC	chr12	-	chr12:125391808-125399132;chr12:125375350-125399132;chr12:125398312-125399132	chr12:125398321-125399132		chr12:125375350-125391807;chr12:125391808-125398311;chr12:125398312-125398320	chr12:125375349-125375350;chr12:125391807-125391808;chr12:125398311-125398312		99.63	99.24	99.85	99.32	99.73	93.75	99.43	99.78	99.86	99.59	99.70	99.59	99.56	99.67	99.82	99.78	99.76	99.63	97.80	99.88	99.57	99.54	99.37	99.86	100.00	99.73	99.77	99.54	99.63	99.46	99.17	99.50	97.42	99.46	99.57	99.50	99.34	99.70	0.36	0.148046	0.663989
N	cassette	OSER1	chr20	-	chr20:42826380-42835520;chr20:42826380-42839335	chr20:42826380-42831600;chr20:42831715-42839335,chr20:42831715-42835520		chr20:42831601-42831714			93.94	100.00	92.77	89.47	94.74	100.00	100.00	98.25	98.96	96.67	100.00	97.46	100.00	96.15	95.65	95.16	100.00	96.74	NA	97.18	95.00	94.87	100.00	93.67	NA	96.61	95.00	94.87	100.00	95.24	95.56	94.12	100.00	92.11	100.00	95.42	100.00	96.38	-3.62	0.001600	0.133542
K	coord_cassette	DBNL	chr7	+	chr7:44089880-44096355	chr7:44089880-44091428;chr7:44091542-44092465;chr7:44092551-44096355		chr7:44091429-44091541;chr7:44092466-44092550			97.30	100.00	100.00	NA	100.00	NA	98.99	100.00	100.00	100.00	98.00	98.11	100.00	100.00	100.00	100.00	100.00	98.28	90.00	100.00	95.24	92.86	100.00	95.24	100.00	98.21	96.55	100.00	100.00	100.00	95.45	100.00	NA	100.00	100.00	100.00	100.00	99.10	-0.90	0.753841	0.876306
K	intron_retention	RPS25	chr11	-	chr11:118888144-118888667				chr11:118888143-118888144;chr11:118888667-118888668		80.00	82.87	88.49	88.66	86.56	82.56	88.24	92.00	90.20	84.34	84.48	80.11	89.93	84.44	91.62	90.11	81.36	82.67	75.48	77.61	78.16	84.62	77.46	79.07	82.99	88.14	89.42	81.96	82.46	81.55	83.56	80.88	77.06	88.60	85.45	84.94	82.93	84.00	1.07	0.591998	1.000000
K	intron_retention	ARL2	chr11	+	chr11:64789361-64789442				chr11:64789360-64789361;chr11:64789442-64789443		96.00	91.94	87.80	91.11	92.37	91.94	96.97	91.67	93.75	96.43	94.74	89.74	96.30	95.24	94.12	95.65	97.53	97.22	88.58	89.29	92.62	94.44	94.03	100.00	88.37	88.00	92.73	93.94	95.06	87.76	100.00	100.00	87.94	95.35	94.12	100.00	90.26	93.45	3.20	0.916919	1.000000
N	jcn_only_AD	SMC5	chr9	+	chr9:72965388-72967106	chr9:72966633-72967106		chr9:72965388-72966632	chr9:72965387-72965388		0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	CLASRP	chr19	+	chr19:45573820-45574060				chr19:45573819-45573820;chr19:45574060-45574061		1.05	2.03	2.70	2.13	1.38	1.00	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	0.00	NA	1.11	2.13	3.25	0.00	3.33	0.00	0.84	2.63	4.23	3.23	5.41	0.00	1.61	2.94	2.02	1.96	3.51	1.67	1.11	1.61	0.50	0.420514	1.000000
K	intron_retention	VAMP2	chr17	-	chr17:8064190-8064790				chr17:8064189-8064190;chr17:8064790-8064791		12.00	0.00	15.79	7.69	NA	NA	0.00	4.26	2.94	0.00	0.00	NA	3.57	0.00	1.33	0.00	0.00	0.00	0.00	6.45	8.82	0.00	7.14	NA	NA	4.00	7.69	6.67	11.76	0.00	8.33	15.62	0.00	7.69	6.25	11.11	0.00	5.36	5.36	0.374838	1.000000
K	intron_retention	PNP	chr14	+	chr14:20942735-20942931				chr14:20942734-20942735;chr14:20942931-20942932		6.77	8.11	5.58	1.75	2.75	3.85	0.00	0.00	0.00	0.39	0.55	0.38	0.00	0.00	0.00	0.34	0.56	1.26	8.33	0.00	4.23	5.28	2.97	5.51	NA	5.21	7.51	1.16	2.82	3.13	6.52	7.08	NA	1.50	4.14	4.99	4.05	2.60	-1.45	0.356858	1.000000
N	jcn_only_AA	RBM42	chr19	+	chr19:36123904-36123978;chr19:36123904-36124002	chr19:36123904-36123999		chr19:36123979-36123999;chr19:36124000-36124002	chr19:36123999-36124000;chr19:36124002-36124003		2.44	0.00	0.00	0.00	2.13	0.00	5.13	0.00	6.90	0.00	3.12	5.26	0.00	3.45	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.907846	0.968555
N	alternative_donor	UBAC1	chr9	-	chr9:138838218-138839643	chr9:138838218-138838789		chr9:138838790-138839643	chr9:138839643-138839644		1.89	0.00	4.05	NA	0.00	NA	0.96	2.63	3.57	0.00	1.61	0.00	2.11	0.00	4.35	0.00	0.68	NA	0.00	3.33	3.23	NA	1.59	NA	6.67	2.86	3.45	0.00	1.75	NA	0.00	1.82	0.00	2.70	2.82	8.33	0.48	2.26	1.78	0.897958	0.977754
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140002115-140002461;chr9:140002115-140002878;chr9:140002115-140002839	chr9:140002115-140002982		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		1.96	7.64	0.00	0.00	5.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	5.69	0.00	0.00	7.14	7.14	0.00	0.00	0.00	3.85	8.33	2.38	0.00	9.09	3.57	4.29	6.67	8.70	4.55	3.21	0.00	-3.21	0.475972	0.777606
K	intron_retention		chr3	+	chr3:184021538-184021734				chr3:184021537-184021538;chr3:184021734-184021735		3.00	0.00	8.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	1.37	0.00	NA	5.21	3.70	8.11	5.05	6.33	NA	2.94	4.26	0.00	1.82	2.94	3.12	3.45	0.00	4.27	6.93	4.42	0.00	2.97	2.97	0.066374	1.000000
K	intron_retention	TMEM138	chr11	+	chr11:61133689-61135394				chr11:61133688-61133689;chr11:61135394-61135395		7.27	17.14	10.64	3.77	2.27	0.00	0.00	0.00	0.00	0.00	1.09	0.00	2.27	0.81	1.67	0.65	1.02	0.00	0.00	9.26	4.44	2.41	4.72	2.38	0.00	3.70	6.00	3.92	5.49	2.44	8.87	11.76	9.52	5.04	5.14	8.45	1.14	5.48	4.35	0.881498	1.000000
K	coord_cassette	C20orf24,TGIF2-C20orf24	chr20	+	chr20:35236222-35240412	chr20:35236222-35236292;chr20:35236404-35238003;chr20:35238134-35240412		chr20:35236293-35236403;chr20:35238004-35238133			70.00	56.25	84.21	73.33	59.09	NA	64.71	67.50	73.68	NA	76.92	NA	63.64	69.05	77.27	66.67	54.55	NA	81.25	72.50	66.67	71.43	68.42	84.62	NA	76.60	68.75	77.78	52.94	60.87	80.00	79.63	56.25	78.79	70.97	82.93	63.64	71.25	7.61	0.155603	0.643829
K	jcn_only_AA	MRPS22	chr3	+	chr3:139069165-139069872	chr3:139069165-139069818		chr3:139069819-139069872	chr3:139069872-139069873		100.00	100.00	90.91	81.25	88.24	100.00	97.56	92.59	100.00	97.83	100.00	100.00	100.00	100.00	100.00	92.98	96.00	100.00	81.25	88.89	87.80	90.00	86.96	100.00	100.00	92.00	96.15	96.77	91.43	93.94	90.00	87.10	85.00	92.11	92.86	92.00	98.78	92.30	-6.48	0.989414	0.997790
N	jcn_only_AD	PLD2	chr17	+	chr17:4722845-4725087;chr17:4722878-4725087;chr17:4722837-4725087	chr17:4722841-4725087		chr17:4722837-4722840;chr17:4722841-4722844;chr17:4722845-4722877	chr17:4722836-4722837;chr17:4722840-4722841;chr17:4722844-4722845		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.00	6.15	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	MDH2	chr7	+	chr7:75677545-75686727	chr7:75677545-75684147;chr7:75684317-75686727		chr7:75684148-75684316			98.25	100.00	93.67	100.00	95.35	94.44	97.91	100.00	98.48	96.97	98.55	98.43	97.20	100.00	97.70	98.01	96.59	98.52	95.65	95.45	95.18	95.31	98.13	96.43	85.29	100.00	95.52	98.21	96.43	100.00	96.00	94.81	93.88	100.00	97.80	98.08	96.43	99.12	2.70	0.194652	0.709176
N	cassette	CPNE1	chr20	-	chr20:34218413-34218822	chr20:34218413-34218662;chr20:34218718-34218822		chr20:34218663-34218717			97.56	100.00	95.40	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	95.65	95.35	100.00	97.37	100.00	100.00	89.47	100.00	100.00	91.23	100.00	100.00	97.92	93.75	100.00	95.74	100.00	91.84	100.00	100.00	95.24	93.88	98.65	100.00	95.33	-4.67	0.010235	0.314700
K	cassette	SEC23B	chr20	+	chr20:18529415-18534878	chr20:18529415-18531732;chr20:18531820-18534878		chr20:18531733-18531819			98.68	100.00	98.13	100.00	98.18	100.00	98.77	98.44	98.99	100.00	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	96.61	100.00	95.65	100.00	100.00	98.48	100.00	100.00	94.44	98.61	100.00	100.00	100.00	100.00	100.00	97.00	100.00	98.58	-1.42	0.084002	0.641134
N	cassette	EDEM2	chr20	-	chr20:33714179-33725682;chr20:33714179-33730175;chr20:33714179-33722540;chr20:33711838-33725682;chr20:33714179-33721907	chr20:33711838-33719444,chr20:33714179-33719444;chr20:33719587-33722540,chr20:33719587-33721907,chr20:33719587-33725682,chr20:33719587-33730175		chr20:33719445-33719586			98.36	100.00	92.73	NA	90.00	NA	94.23	96.23	94.29	100.00	93.02	91.67	92.16	94.34	91.67	90.48	88.37	100.00	100.00	89.86	91.18	92.31	94.87	93.75	NA	93.75	90.20	100.00	100.00	100.00	92.98	90.16	93.33	92.31	86.84	92.50	94.23	94.05	-0.19	0.437502	0.743097
K	cassette	HNRNPA3	chr2	+	chr2:178081669-178083764	chr2:178081669-178082432;chr2:178082574-178083764		chr2:178082433-178082573			100.00	100.00	100.00	100.00	95.92	100.00	100.00	98.04	100.00	94.41	99.36	96.64	98.47	100.00	100.00	97.09	98.12	96.18	100.00	98.08	97.67	97.96	98.57	95.31	100.00	100.00	100.00	97.50	98.88	95.79	96.15	100.00	100.00	96.97	100.00	98.85	100.00	99.04	-0.96	0.181678	0.709176
K	intron_retention	TMEM165	chr4	+	chr4:56284153-56290704				chr4:56284152-56284153;chr4:56290704-56290705		3.28	0.00	5.54	6.25	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.83	0.00	1.14	1.05	0.00	0.00	0.00	2.07	1.85	3.53	3.70	5.00	16.67	4.07	2.67	0.00	3.08	5.36	6.00	3.29	3.57	6.36	4.55	7.45	0.41	2.67	2.26	0.653279	1.000000
N	intron_retention		chr1	-	chr1:84967654-85028939				chr1:84967653-84967654;chr1:85028939-85028940		0.00	0.00	2.90	0.00	0.00	0.00	0.00	0.00	8.70	0.00	7.14	0.00	NA	9.09	5.00	NA	NA	NA	3.03	0.00	2.63	0.00	0.00	0.00	0.00	0.00	1.59	NA	0.00	0.00	3.64	0.00	0.00	4.17	0.00	5.41	0.00	0.00	0.00	0.930883	1.000000
K	intron_retention		chr19	-	chr19:15562750-15562855				chr19:15562749-15562750;chr19:15562855-15562856		0.00	9.68	5.00	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	4.76	4.76	0.00	NA	15.38	NA	0.00	0.00	7.89	NA	0.00	NA	0.00	2.94	7.50	0.00	10.00	NA	2.38	0.00	-2.38	0.714459	1.000000
K	alternative_acceptor	RNASE1	chr14	-	chr14:21270156-21270955	chr14:21270253-21270955		chr14:21270156-21270252	chr14:21270155-21270156		91.16	89.53	89.94	88.28	88.92	87.52	88.96	89.04	89.25	86.45	86.66	86.54	89.61	89.80	89.93	89.97	87.41	87.71	92.40	93.81	93.84	92.55	91.19	90.82	88.13	90.21	90.80	90.80	90.83	90.92	94.19	92.27	92.97	90.18	91.11	90.73	89.57	90.69	1.12	0.375550	0.709013
N	alternative_acceptor		chr19	+	chr19:17294678-17295409;chr19:17294678-17295711;chr19:17294678-17295691	chr19:17294678-17295673		chr19:17295410-17295673;chr19:17295674-17295691;chr19:17295692-17295711	chr19:17295673-17295674;chr19:17295691-17295692;chr19:17295711-17295712		86.49	81.40	89.09	NA	NA	NA	100.00	97.87	100.00	100.00	100.00	100.00	98.94	100.00	96.77	100.00	98.75	100.00	90.00	91.89	NA	88.57	88.10	90.62	84.62	93.10	89.74	96.30	92.86	100.00	85.00	86.49	84.62	90.80	89.02	92.47	87.31	92.50	5.19	0.556974	0.826636
K	intron_retention	MAN2C1	chr15	-	chr15:75648791-75648946				chr15:75648790-75648791;chr15:75648946-75648947		10.53	4.76	9.68	4.44	10.23	3.51	0.00	0.00	0.00	4.76	2.50	0.00	0.00	NA	12.00	0.00	0.00	0.00	3.23	9.52	8.62	0.00	7.58	3.23	15.71	6.67	11.76	8.00	6.25	7.14	7.14	6.98	9.59	2.50	9.30	7.02	4.00	7.14	3.14	0.946706	1.000000
K	intron_retention	C19orf66	chr19	+	chr19:10200724-10201925				chr19:10200723-10200724;chr19:10201925-10201926		0.00	0.00	0.00	NA	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	6.25	0.00	1.06	0.00	0.66	0.00	1.56	0.00	0.65	1.31	1.23	0.00	2.00	6.45	2.07	0.00	0.33	0.33	0.474573	1.000000
N	cassette	HSD17B4	chr5	+	chr5:118865676-118872117	chr5:118865676-118866960;chr5:118867100-118872117		chr5:118866961-118867099			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	DHPS,ZNF615	chr19	-	chr19:12790737-12791009;chr19:12790737-12790974;chr19:12790737-12791015	chr19:12790737-12790963		chr19:12790964-12790974;chr19:12790975-12791009;chr19:12791010-12791015	chr19:12790974-12790975;chr19:12791009-12791010;chr19:12791015-12791016		6.90	0.00	8.57	NA	5.88	NA	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	8.33	NA	15.38	NA	NA	0.00	6.06	NA	7.14	0.00	11.11	12.90	0.00	NA	0.00	0.00	0.00	3.45	3.45	0.086825	0.632469
N	jcn_only_AA	PLEKHM2	chr1	+	chr1:16057753-16058393;chr1:16057753-16058444	chr1:16057753-16058383		chr1:16058384-16058393;chr1:16058394-16058444	chr1:16058393-16058394;chr1:16058444-16058445		92.86	87.84	87.23	90.16	88.60	93.10	98.36	95.73	95.70	97.64	96.83	98.81	95.19	96.69	96.47	95.60	95.54	97.17	87.50	86.67	92.41	87.93	88.33	89.05	100.00	94.67	93.69	94.17	92.45	95.10	82.66	83.87	82.19	87.64	89.12	90.04	91.52	93.77	2.25	0.936728	0.979703
N	alternative_acceptor	M6PR	chr12	-	chr12:9094537-9095011;chr12:9093298-9095011;chr12:9093500-9095011	chr12:9093466-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		1.02	0.50	0.87	17.51	12.07	18.71	0.00	0.00	0.00	0.39	0.91	1.67	0.00	0.00	1.29	2.37	0.99	1.31	3.76	0.39	1.76	1.42	2.64	1.18	1.31	1.08	0.94	0.60	1.20	1.45	1.94	0.62	1.09	1.99	0.78	1.48	0.80	0.71	-0.09	0.584944	0.843374
N	alternative_acceptor	ADRBK2	chr22	+	chr22:26110538-26114211	chr22:26110538-26113272		chr22:26113273-26114211	chr22:26114211-26114212		4.55	13.33	5.56	NA	4.35	9.09	0.00	2.33	1.37	2.86	1.39	0.00	1.67	0.00	2.70	0.00	1.33	0.00	5.00	5.88	3.45	NA	3.45	0.00	4.35	3.70	4.65	NA	0.00	3.57	11.76	7.14	11.54	4.76	8.11	7.14	4.67	4.12	-0.55	0.649899	0.871933
K	intron_retention	OTUB1	chr11	+	chr11:63764899-63765158				chr11:63764898-63764899;chr11:63765158-63765159		96.36	94.19	96.49	91.43	93.59	89.66	90.74	93.62	94.55	97.83	98.44	100.00	95.74	94.59	93.22	96.23	98.53	100.00	98.48	95.00	96.63	88.24	95.71	95.24	96.00	100.00	96.43	92.11	98.21	91.11	95.52	98.70	96.43	94.59	95.56	92.42	95.87	95.26	-0.61	0.936855	1.000000
N	alternative_acceptor	STAB1	chr3	+	chr3:52553581-52553928;chr3:52553581-52554026;chr3:52553581-52553796;chr3:52553581-52553959	chr3:52553581-52553793		chr3:52553794-52553796;chr3:52553797-52553928;chr3:52553929-52553959;chr3:52553960-52554026	chr3:52553796-52553797;chr3:52553928-52553929;chr3:52553959-52553960;chr3:52554026-52554027		1.80	1.98	4.04	0.00	1.18	0.00	0.39	0.00	0.00	0.00	0.22	0.00	0.47	0.00	0.00	0.00	0.35	0.00	0.93	1.05	5.26	0.00	1.22	0.00	1.18	1.14	3.25	0.57	1.96	0.00	0.00	0.00	1.04	0.59	0.97	0.00	0.99	0.53	-0.46	0.418148	0.732454
N	intron_retention	TNFAIP2	chr14	+	chr14:103589821-103590143				chr14:103589820-103589821;chr14:103590143-103590144		100.00	100.00	100.00	NA	NA	NA	92.59	100.00	98.06	100.00	89.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.629122	1.000000
K	jcn_only_AA	PSMC3	chr11	-	chr11:47447498-47447755	chr11:47447502-47447755		chr11:47447498-47447501	chr11:47447497-47447498		100.00	100.00	100.00	NA	100.00	NA	100.00	98.00	100.00	100.00	100.00	100.00	97.33	100.00	98.44	100.00	100.00	100.00	96.67	100.00	98.18	100.00	96.61	100.00	100.00	97.56	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	0.00	0.750475	0.887739
K	alternative_last_exon	AZI2	chr3	-	chr3:28368442-28373859	chr3:28373442-28373859,chr3:28373446-28373859	chr3:28368323-28368441	chr3:28373182-28373441			31.67	100.00	17.33	73.68	87.50	96.77	16.22	17.65	18.39	25.00	23.81	26.15	16.67	21.52	16.67	34.48	31.03	24.59	89.47	30.51	70.37	35.29	36.00	21.28	NA	23.64	24.07	33.33	56.00	55.10	46.43	32.76	84.21	26.92	28.57	21.05	84.21	27.08	-57.13	0.152550	0.363773
K	intron_retention	OXA1L	chr14	+	chr14:23239144-23239401				chr14:23239143-23239144;chr14:23239401-23239402		10.64	0.00	5.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.34	3.45	0.00	3.61	0.00	NA	9.52	2.47	0.00	3.61	4.00	0.00	5.88	0.00	4.35	3.92	5.26	0.00	4.76	4.76	0.293225	1.000000
N	jcn_only_AA	AKNA	chr9	-	chr9:117106084-117108142	chr9:117106648-117108142		chr9:117106084-117106647	chr9:117106083-117106084		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	10.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	cassette	ZNF467	chr7	-	chr7:149461768-149467528;chr7:149463329-149467528	chr7:149461768-149466178,chr7:149463329-149466178;chr7:149466290-149467528		chr7:149466179-149466289			100.00	100.00	100.00	NA	NA	NA	94.12	94.44	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	NA	100.00	84.62	NA	NA	NA	100.00	100.00	0.00	0.371605	0.709176
K	intron_retention		chr17	+	chr17:40716596-40716726				chr17:40716595-40716596;chr17:40716726-40716727		5.41	0.00	20.00	10.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	7.14	0.00	10.00	9.52	25.00	20.00	6.06	8.11	4.17	6.90	9.30	0.00	11.63	5.26	16.67	12.50	11.36	0.00	2.71	2.71	0.739862	1.000000
N	jcn_only_AA	UNC119	chr17	-	chr17:26874424-26874694	chr17:26874428-26874694		chr17:26874424-26874427	chr17:26874423-26874424		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.88	100.00	100.00	100.00	100.00	100.00	94.44	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.195149	0.663989
K	intron_retention	MLLT6	chr17	+	chr17:36868268-36868943				chr17:36868267-36868268;chr17:36868943-36868944		3.85	9.09	2.47	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.81	0.81	0.00	1.45	NA	0.00	NA	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.13	0.00	1.64	0.00	0.00	0.00	0.631178	1.000000
K	intron_retention	CARD19	chr9	+	chr9:95874221-95874499				chr9:95874220-95874221;chr9:95874499-95874500		20.43	19.63	20.83	8.62	18.97	7.02	2.20	1.56	0.00	2.86	2.53	5.88	2.88	3.30	2.27	1.67	5.88	0.00	16.22	11.34	16.13	10.94	15.64	8.57	20.00	13.58	23.66	9.09	11.66	11.36	13.76	22.03	17.09	9.21	16.24	10.26	16.66	12.46	-4.20	0.722189	1.000000
K	alternative_last_exon	ARPIN,C15orf38-AP3S2	chr15	-	chr15:90432373-90446447	chr15:90445036-90446447	chr15:90432281-90432372	chr15:90438238-90445035			70.00	80.00	81.25	NA	NA	NA	84.31	68.75	64.29	NA	94.29	NA	88.00	66.67	81.82	NA	89.66	NA	NA	NA	NA	NA	72.73	NA	91.67	60.00	66.67	NA	87.50	NA	NA	NA	NA	NA	NA	NA	86.16	67.71	-18.44	0.001137	0.084626
K	intron_retention	PSMC2	chr7	+	chr7:103008257-103008343				chr7:103008256-103008257;chr7:103008343-103008344		2.63	3.95	2.78	1.74	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	4.44	1.66	0.00	1.20	1.23	2.11	0.00	0.78	0.00	0.00	0.00	5.15	3.26	4.63	0.59	1.11	1.52	1.91	1.31	-0.59	0.926731	1.000000
K	cassette	PRPF4B	chr6	+	chr6:4062534-4063307	chr6:4062534-4062790;chr6:4062868-4063307		chr6:4062791-4062867			76.67	87.10	73.33	62.86	76.36	61.84	NA	NA	NA	NA	NA	NA	NA	NA	63.64	NA	NA	NA	74.00	62.50	78.05	78.57	76.32	64.71	69.12	69.70	70.00	64.29	84.00	70.59	83.33	82.86	83.33	83.33	81.48	66.67	78.66	73.19	-5.48	0.415558	0.728056
K	intron_retention	HNRNPH3	chr10	+	chr10:70101067-70101341				chr10:70101066-70101067;chr10:70101341-70101342		9.41	7.35	10.20	1.64	0.00	4.88	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	2.27	0.00	0.00	0.00	2.50	6.02	3.75	5.95	4.85	4.44	0.00	5.38	4.04	3.61	3.64	2.30	13.68	10.42	8.82	6.73	5.88	6.45	1.25	5.70	4.45	0.570613	1.000000
K	jcn_only_AD	EMC6	chr17	+	chr17:3572194-3572391	chr17:3572307-3572391		chr17:3572194-3572306	chr17:3572193-3572194		29.17	20.00	16.13	28.57	22.58	14.29	29.55	47.83	42.31	21.28	25.71	20.00	20.59	28.57	20.00	16.67	15.15	23.08	4.17	24.00	26.67	20.69	11.90	26.32	NA	30.77	31.25	14.81	20.00	32.35	25.00	30.77	16.67	19.05	20.00	24.32	20.00	28.87	8.87	0.045824	0.498009
K	intron_retention		chr3	-	chr3:38167373-38168000				chr3:38167372-38167373;chr3:38168000-38168001		29.63	23.45	34.00	20.00	22.68	12.50	13.04	16.67	13.64	0.00	4.55	13.33	28.57	10.00	12.50	6.67	0.00	0.00	18.99	27.78	22.47	24.00	24.62	14.29	17.86	25.71	37.14	34.78	31.58	25.00	27.85	33.98	14.43	21.31	27.14	20.41	18.42	26.75	8.32	0.804308	1.000000
N	jcn_only_AD	SNX3	chr6	-	chr6:108544250-108582011;chr6:108544250-108582029	chr6:108544250-108581963		chr6:108581964-108582011;chr6:108582012-108582029	chr6:108582011-108582012;chr6:108582029-108582030		87.10	88.31	92.45	100.00	92.86	NA	93.37	94.72	93.55	95.50	94.19	94.30	92.35	94.65	93.99	95.53	93.60	92.49	76.92	91.21	92.31	92.86	92.34	88.68	NA	93.01	91.58	95.38	94.07	91.30	90.40	87.94	100.00	88.89	90.40	90.09	92.35	92.11	-0.24	0.695931	0.845069
K	alternative_acceptor	ORC4	chr2	-	chr2:148693268-148695714	chr2:148694585-148695714		chr2:148693268-148694584	chr2:148693267-148693268		2.78	5.56	5.13	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	5.56	0.00	0.00	0.00	0.00	4.17	0.00	0.00	4.55	NA	0.00	9.09	3.45	NA	6.67	0.00	5.26	5.00	0.00	4.17	4.00	10.00	0.00	4.17	4.17	0.100743	0.598353
N	cassette	VAV1	chr19	+	chr19:6850769-6853957	chr19:6850769-6852975;chr19:6853091-6853957		chr19:6852976-6853090			96.27	96.76	97.22	96.40	95.24	97.39	100.00	97.03	97.62	97.75	96.04	100.00	95.79	100.00	100.00	97.11	100.00	97.67	96.33	95.79	95.18	95.90	96.17	95.38	98.42	96.76	96.56	98.11	93.28	97.41	97.48	95.65	93.60	95.31	96.06	96.53	96.55	96.90	0.35	0.717903	0.899501
N	alternative_acceptor	DENND3	chr8	+	chr8:142190954-142195237	chr8:142190954-142192419		chr8:142192420-142195237	chr8:142195237-142195238		2.70	5.00	4.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	9.09	3.03	0.00	NA	0.00	0.00	NA	4.76	1.64	0.00	NA	1.72	0.00	2.22	NA	7.14	6.67	9.09	2.50	1.35	-1.15	0.493690	0.791230
K	alternative_donor	HSD3B7	chr16	+	chr16:30997146-30997369	chr16:30997269-30997369		chr16:30997146-30997268	chr16:30997145-30997146		0.00	6.25	9.09	NA	6.67	NA	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	6.25	NA	0.00	0.00	NA	0.00	3.70	NA	NA	NA	NA	3.57	5.26	0.00	0.57	0.00	-0.57	0.303010	0.650093
K	intron_retention		chr7	-	chr7:45002495-45002568				chr7:45002494-45002495;chr7:45002568-45002569		6.13	10.00	6.32	7.08	6.80	6.34	0.00	1.57	2.31	5.00	0.00	0.00	4.17	2.75	3.12	4.17	0.00	2.99	2.86	5.73	3.86	6.52	8.62	7.23	2.78	5.01	3.42	6.21	5.88	3.74	12.09	8.14	5.21	4.08	6.25	5.24	3.51	5.37	1.86	0.809393	1.000000
K	intron_retention	USP19	chr3	-	chr3:49148600-49148687				chr3:49148599-49148600;chr3:49148687-49148688		6.25	11.54	4.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	3.33	0.00	0.00	0.00	16.67	3.70	0.00	14.29	3.33	6.25	NA	0.00	7.32	0.00	0.00	0.00	4.76	4.44	0.00	4.35	3.70	2.38	3.45	1.85	-1.60	0.549349	1.000000
K	coord_cassette	NAGK	chr2	+	chr2:71295843-71299770	chr2:71295843-71297870;chr2:71297970-71298815;chr2:71298958-71299770		chr2:71297871-71297969;chr2:71298816-71298957			98.28	96.81	100.00	100.00	97.70	100.00	100.00	100.00	97.94	100.00	100.00	100.00	100.00	99.71	100.00	100.00	100.00	98.68	98.63	99.28	98.46	100.00	97.97	98.68	92.75	98.85	95.31	98.59	99.03	99.19	96.70	95.92	96.20	96.83	100.00	99.15	97.72	99.06	1.34	0.293090	0.643829
N	alternative_last_exon	BACH1	chr21	+	chr21:30702015-30783841;chr21:30702015-30733872;chr21:30702015-30714719	chr21:30702015-30723954	chr21:30733873-30734215;chr21:30714720-30718469	chr21:30723955-30724134			0.66	15.38	4.35	2.78	0.00	1.57	0.00	0.45	0.60	0.40	1.79	0.39	0.00	0.80	1.24	0.40	0.00	0.44	NA	0.78	4.76	1.47	0.00	0.80	16.67	0.56	1.87	0.88	0.00	0.65	0.00	0.00	NA	2.04	1.22	1.70	7.69	0.61	-7.08	0.205274	0.432827
N	jcn_only_AA		chr19	+	chr19:47774907-47776613	chr19:47774907-47775325					88.37	100.00	80.00	NA	90.00	78.95	100.00	92.31	92.86	NA	NA	NA	100.00	93.33	96.55	NA	NA	NA	NA	87.50	90.91	NA	81.82	100.00	92.86	100.00	90.48	100.00	NA	100.00	85.71	100.00	NA	NA	100.00	77.78	100.00	90.34	-9.66	0.035503	0.663989
K	alternative_acceptor	DEF8	chr16	+	chr16:90021675-90023880;chr16:90021675-90023948	chr16:90021675-90023918		chr16:90023881-90023918;chr16:90023919-90023948	chr16:90023918-90023919;chr16:90023948-90023949		88.10	88.61	91.30	93.33	94.92	97.22	84.62	94.12	94.44	96.15	95.12	93.75	77.14	95.65	100.00	100.00	88.57	100.00	86.49	92.59	97.30	95.83	93.62	100.00	90.91	93.33	91.67	100.00	90.32	100.00	94.44	86.84	89.66	95.12	92.16	95.12	87.55	93.72	6.17	0.019523	0.525246
N	jcn_only_AD	C1QC	chr1	+	chr1:22970231-22970503;chr1:22970380-22970503;chr1:22965709-22970503;chr1:22965655-22970503	chr1:22970208-22970503		chr1:22965655-22965708;chr1:22965709-22970207;chr1:22970208-22970230;chr1:22970231-22970379	chr1:22965654-22965655;chr1:22965708-22965709;chr1:22970207-22970208;chr1:22970230-22970231		90.60	91.96	90.41	92.23	90.35	91.87	88.64	87.61	87.75	89.47	90.04	89.49	87.64	86.95	88.47	90.28	89.75	89.83	92.05	88.40	90.78	92.61	90.63	91.87	94.11	88.68	89.88	90.37	90.66	91.12	90.42	93.89	91.93	91.27	91.62	92.16	91.94	88.54	-3.40	0.083718	0.632469
K	intron_retention	BNIP3	chr10	-	chr10:133782074-133784141				chr10:133782073-133782074;chr10:133784141-133784142		6.43	5.88	9.43	11.54	0.00	6.49	0.00	0.00	0.00	5.26	4.55	0.00	0.00	0.00	0.49	0.00	0.00	0.00	4.26	5.95	3.36	5.00	6.67	6.67	0.00	3.92	3.67	13.33	0.00	4.08	8.62	9.52	5.71	3.57	6.00	12.24	2.13	4.94	2.81	0.753334	1.000000
K	intron_retention	PREX1	chr20	.	chr20:47248930-47249033				chr20:47248929-47248930;chr20:47249033-47249034		11.57	15.00	13.77	NA	13.79	NA	0.00	0.00	0.00	2.33	0.00	0.00	1.20	0.00	2.50	0.00	0.00	0.00	0.00	14.56	13.64	9.09	8.64	11.11	23.81	5.60	13.08	7.69	2.27	8.33	15.38	19.10	14.81	6.82	13.04	8.22	8.01	8.59	0.58	0.592835	1.000000
K	intron_retention	DNPEP	chr2	-	chr2:220246862-220247852				chr2:220246861-220246862;chr2:220247852-220247853		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	7.69	0.00	5.00	4.00	3.03	0.00	0.00	0.00	0.00	0.00	4.76	0.00	8.82	0.00	4.17	3.57	1.92	0.00	0.00	0.00	0.594508	1.000000
N	alternative_last_exon	LILRB5	chr19	-	chr19:54755030-54755916,chr19:54755824-54755916;chr19:54721344-54755916;chr19:54755033-54755916	chr19:54754797-54755916	chr19:54721188-54721343;chr19:54754991-54755032	chr19:54753898-54754796			92.98	91.91	NA	97.37	91.57	96.15	93.68	96.43	NA	96.92	94.74	95.52	97.47	97.37	NA	95.80	96.12	95.54	95.14	94.05	100.00	90.48	93.75	93.62	99.75	99.02	100.00	97.70	96.64	98.40	97.62	95.45	98.63	98.68	96.25	99.19	96.31	96.90	0.59	0.925903	0.970242
N	alternative_donor	ANAPC2	chr9	-	chr9:140070290-140074632;chr9:140070290-140070454;chr9:140070290-140072519	chr9:140070290-140071500		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		7.14	2.38	9.30	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	4.00	7.14	4.35	NA	3.12	11.76	0.00	8.33	5.13	6.67	4.00	7.14	6.25	5.56	3.33	4.17	4.55	6.12	2.22	5.00	5.71	6.67	2.75	5.84	3.09	0.288731	0.650093
N	cassette	TAX1BP1	chr7	+	chr7:27839710-27867356	chr7:27839710-27855967;chr7:27856014-27867356		chr7:27855968-27856013			89.13	100.00	86.89	NA	82.14	81.82	100.00	93.62	89.86	95.00	100.00	90.91	85.29	92.50	90.12	86.49	94.00	89.19	83.33	75.56	88.46	87.10	83.33	82.61	NA	88.10	91.23	82.76	92.31	84.62	84.38	86.54	83.33	81.13	87.80	83.33	85.29	88.61	3.32	0.526134	0.802310
K	intron_retention	AUP1	chr2	-	chr2:74756410-74756488				chr2:74756409-74756410;chr2:74756488-74756489		6.76	18.37	17.11	0.00	6.67	NA	0.00	0.00	1.22	1.50	0.78	1.08	0.98	2.70	2.33	1.92	1.76	1.80	4.55	7.25	4.76	12.00	13.89	15.79	8.33	3.64	5.38	4.23	3.90	2.22	9.23	13.92	6.67	10.45	9.89	10.75	5.61	5.20	-0.41	0.998463	1.000000
K	alternative_first_exon	PCBP1-AS1	chr2	-	chr2:70312757-70313383,chr2:70312757-70313255,chr2:70312757-70313186,chr2:70312757-70312947;chr2:70312757-70315561;chr2:70312757-70315729;chr2:70312757-70314204;chr2:70312757-70314109	chr2:70312757-70314919	chr2:70313384-70313405;chr2:70315562-70315686;chr2:70315730-70315978;chr2:70314205-70314452;chr2:70314110-70314147	chr2:70314920-70315039			8.96	1.98	13.56	3.47	4.31	0.00	14.92	17.51	18.10	22.00	19.61	18.87	16.54	17.73	17.83	16.84	20.00	21.29	1.96	12.09	4.62	12.55	11.32	12.11	2.25	9.61	12.50	12.03	8.05	8.54	8.01	13.29	1.95	11.88	10.59	13.13	2.12	10.85	8.73	0.128976	0.308050
N	alternative_acceptor		chr3	+	chr3:127396407-127396538	chr3:127396407-127396518		chr3:127396519-127396538	chr3:127396538-127396539		91.67	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.31	93.75	100.00	NA	88.89	NA	100.00	100.00	96.30	NA	100.00	NA	88.46	100.00	89.29	100.00	100.00	100.00	100.00	96.88	-3.12	0.662368	0.877732
K	intron_retention	KLHDC8B	chr3	+	chr3:49212400-49212494				chr3:49212399-49212400;chr3:49212494-49212495		12.50	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	7.69	NA	NA	0.00	NA	NA	10.87	NA	NA	NA	NA	10.00	26.67	14.29	NA	14.29	NA	0.00	8.85	8.85	0.892456	1.000000
K	intron_retention	MAPK13	chr6	+	chr6:36106558-36106655				chr6:36106557-36106558;chr6:36106655-36106656		5.33	1.82	1.67	4.23	5.00	4.35	0.00	0.00	0.00	0.57	0.59	0.00	0.00	0.00	0.00	0.00	0.70	0.00	4.00	5.41	3.64	7.23	5.21	3.41	3.57	4.84	7.84	1.23	0.85	0.00	8.57	4.35	9.09	3.50	6.00	1.90	2.69	5.08	2.39	0.999215	1.000000
N	alternative_donor	SH3BP5-AS1	chr3	+	chr3:15301826-15305802;chr3:15302090-15305802;chr3:15302094-15305802	chr3:15302392-15305802		chr3:15301826-15302089;chr3:15302090-15302093;chr3:15302094-15302391	chr3:15301825-15301826;chr3:15302089-15302090;chr3:15302093-15302094		8.70	0.00	7.89	0.00	2.70	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1.56	7.14	3.45	21.43	9.68	20.00	1.11	0.00	5.13	NA	0.00	NA	6.67	3.12	2.22	19.23	13.64	20.00	1.33	6.90	5.57	0.103299	0.505356
K	alternative_acceptor	MGAT4B	chr5	-	chr5:179225577-179225927	chr5:179225592-179225927		chr5:179225577-179225591	chr5:179225576-179225577		94.29	91.43	83.87	88.24	91.18	80.00	100.00	95.24	94.12	93.75	96.49	94.74	96.61	100.00	94.74	97.62	100.00	93.33	83.72	80.77	93.94	85.71	83.87	80.00	95.12	95.24	90.00	92.86	98.15	93.33	87.88	90.00	80.85	93.55	80.00	82.35	93.28	94.77	1.49	0.824143	0.940125
K	jcn_only_AA	LILRB2	chr19	-	chr19:54781452-54781742	chr19:54781455-54781742		chr19:54781452-54781454	chr19:54781451-54781452		36.74	25.88	36.46	42.11	41.13	41.56	38.50	44.44	42.29	43.33	36.73	42.49	47.89	51.43	46.96	51.06	52.11	48.46	38.14	35.21	33.70	38.10	36.62	40.00	28.95	36.58	35.31	45.92	40.62	39.34	30.16	30.47	28.97	31.82	28.33	33.33	33.55	36.66	3.10	0.363292	0.663989
K	intron_retention	NPL	chr1	+	chr1:182761422-182763490				chr1:182761421-182761422;chr1:182763490-182763491		3.50	2.53	5.85	0.00	3.57	NA	0.26	1.61	1.16	0.45	0.64	0.78	1.53	0.00	1.59	1.02	1.07	0.00	0.00	2.94	2.13	0.86	2.03	0.67	20.00	3.67	4.48	0.00	2.58	1.92	2.82	4.00	0.00	2.69	3.56	0.00	0.90	2.88	1.98	0.484192	1.000000
N	alternative_acceptor	SART1	chr11	+	chr11:65729565-65731432;chr11:65729565-65731544	chr11:65729565-65731476		chr11:65731433-65731476;chr11:65731477-65731544	chr11:65731476-65731477;chr11:65731544-65731545		6.06	0.00	7.14	NA	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.70	5.88	0.00	3.12	0.00	0.00	0.00	0.00	0.00	3.70	0.00	12.00	3.57	0.00	5.56	6.25	3.23	0.00	1.85	1.85	0.123812	0.610671
N	alternative_first_exon	CTNND1	chr11	+	chr11:57529791-57556508;chr11:57510457-57556508	chr11:57529519-57556508,chr11:57529541-57556508,chr11:57529592-57556508	chr11:57510335-57510456	chr11:57529269-57529518			40.00	0.00	73.91	0.00	0.00	0.00	75.47	90.32	82.76	78.26	89.09	83.33	77.97	83.87	78.12	66.67	91.55	85.71	0.00	60.00	0.00	10.00	21.05	70.00	0.00	58.33	45.45	NA	18.18	7.69	NA	NA	0.00	52.94	56.25	57.69	0.00	60.00	60.00	0.060025	0.200066
N	jcn_only_AA	ATXN2L	chr16	+	chr16:28842394-28843594;chr16:28842394-28843507	chr16:28842394-28843525		chr16:28843508-28843525;chr16:28843526-28843594	chr16:28843525-28843526;chr16:28843594-28843595		90.00	63.64	86.67	NA	NA	NA	92.42	88.14	87.83	93.68	92.73	88.64	88.89	94.87	90.48	92.71	93.10	96.36	NA	91.18	NA	88.89	84.44	82.76	100.00	87.88	92.59	100.00	89.66	93.75	87.50	90.20	NA	94.92	89.83	93.94	90.66	89.07	-1.59	0.673396	0.854354
K	coord_cassette	CD4	chr12	+	chr12:6898829-6923307	chr12:6898829-6909237;chr12:6909354-6909472;chr12:6909638-6923307		chr12:6909238-6909353;chr12:6909473-6909637			97.26	95.29	86.02	NA	100.00	NA	95.63	97.84	97.25	97.51	97.09	99.57	94.30	98.59	93.59	98.19	94.77	98.80	100.00	96.88	100.00	97.89	96.80	99.00	85.42	100.00	83.75	100.00	94.77	100.00	100.00	91.18	76.47	97.82	94.37	97.24	94.80	98.22	3.42	0.095790	0.643829
K	cassette	TMEM179B	chr11	+	chr11:62556899-62557357	chr11:62556899-62557072;chr11:62557152-62557357		chr11:62557073-62557151			93.88	91.85	97.25	90.00	94.12	93.33	97.59	94.12	94.02	98.46	97.85	96.30	100.00	100.00	91.54	96.08	97.83	100.00	92.41	93.75	93.41	84.85	86.96	95.00	92.45	94.83	94.38	93.10	95.83	91.49	93.85	93.91	87.27	94.00	85.33	84.88	92.43	94.00	1.57	0.503258	0.786576
K	jcn_only_AD	TXNDC17	chr17	+	chr17:6544473-6545072;chr17:6544421-6545072	chr17:6544548-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		88.89	78.00	79.82	78.08	85.48	84.54	87.06	88.89	88.37	81.08	77.42	76.92	88.03	90.38	80.00	85.71	73.49	87.88	85.65	91.36	85.13	81.36	85.83	85.37	88.89	83.05	82.91	76.19	94.17	84.62	84.34	82.41	86.28	75.41	86.73	84.42	86.67	88.89	2.22	0.328821	0.657607
K	intron_retention	RPS4Y1	chrY	+	chrY:2713785-2722640				chrY:2713784-2713785;chrY:2722640-2722641		5.00	2.40	6.92	7.20	4.63	3.79	0.43	2.38	0.00	0.43	0.62	0.00	0.32	4.88	4.05	0.82	0.32	0.00	3.47	3.51	5.31	6.78	5.42	7.69	1.73	10.20	5.92	9.70	6.12	7.63	4.69	4.20	1.64	5.86	5.47	4.14	1.69	4.79	3.10	0.180504	1.000000
N	jcn_only_AA	PLEKHM2	chr1	+	chr1:16047884-16051811	chr1:16047884-16049704		chr1:16049705-16051811	chr1:16051811-16051812		0.00	0.00	6.00	NA	0.00	60.00	0.00	0.00	0.00	0.00	0.84	0.00	1.23	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	5.45	3.33	7.27	0.00	5.13	4.76	5.00	6.15	8.82	2.38	2.78	31.25	3.75	4.41	2.88	0.00	0.00	0.00	0.447202	0.711689
N	cassette	C17orf62	chr17	-	chr17:80403837-80407045;chr17:80404573-80407045	chr17:80403837-80405455,chr17:80404573-80405455;chr17:80405523-80407045		chr17:80405456-80405522			53.64	52.94	57.43	NA	78.57	NA	81.63	84.04	77.78	92.86	90.62	95.45	86.21	87.50	87.93	100.00	89.19	100.00	58.33	60.66	66.67	NA	77.78	87.50	60.00	66.67	68.13	90.91	88.24	89.47	59.38	56.52	60.00	75.00	82.61	87.18	60.00	63.66	3.66	0.795648	0.936947
K	alternative_acceptor	FKBP11	chr12	-	chr12:49317636-49318005	chr12:49317758-49318005		chr12:49317636-49317757	chr12:49317635-49317636		4.17	0.00	4.76	NA	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	0.00	8.33	0.00	NA	7.69	NA	0.00	0.00	8.33	NA	NA	NA	0.00	4.76	0.00	NA	NA	21.43	0.00	0.00	0.00	0.207908	0.670323
N	cassette	MITD1	chr2	-	chr2:99788110-99790377;chr2:99788124-99790377	chr2:99788124-99789876,chr2:99788110-99789876;chr2:99789966-99790377		chr2:99789877-99789965			10.71	0.00	13.73	NA	8.33	NA	0.00	4.76	3.12	0.00	3.45	0.00	3.33	5.56	5.13	0.00	4.00	NA	12.50	10.53	7.14	7.69	11.11	0.00	NA	12.00	6.00	0.00	9.09	11.76	8.57	11.59	9.09	7.69	9.43	9.09	3.33	9.55	6.22	0.232935	0.709176
K	jcn_only_AD	JOSD2,KEAP1	chr19	-	chr19:51013703-51014373	chr19:51013703-51014331		chr19:51014332-51014373	chr19:51014373-51014374		18.18	NA	25.00	NA	NA	NA	18.18	NA	NA	NA	NA	NA	NA	36.36	NA	NA	NA	NA	25.00	20.00	18.18	NA	9.09	NA	0.00	NA	NA	NA	30.77	NA	23.53	16.67	17.65	NA	NA	NA	17.91	21.77	3.85	0.219028	0.657607
K	intron_retention	SRPR	chr11	-	chr11:126134435-126134853				chr11:126134434-126134435;chr11:126134853-126134854		8.57	0.00	6.10	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.23	0.00	0.00	0.00	1.67	0.00	0.00	2.99	3.03	0.00	0.00	3.33	6.67	NA	1.85	0.00	2.86	0.00	1.61	1.61	0.414311	1.000000
K	alternative_acceptor	SLC25A39	chr17	-	chr17:42398100-42398425	chr17:42398118-42398425		chr17:42398100-42398117	chr17:42398099-42398100		5.71	7.91	10.26	6.98	6.67	3.23	0.87	0.00	0.00	0.00	2.35	0.00	0.00	0.00	2.50	2.00	0.93	0.00	1.85	0.00	4.30	0.00	6.06	4.76	0.00	5.88	2.08	0.00	3.08	0.00	20.00	13.33	6.32	5.56	4.49	5.06	1.36	2.85	1.49	0.504139	0.794867
K	cassette	PMF1	chr1	+	chr1:156182968-156202110;chr1:156182968-156203418	chr1:156182968-156195347;chr1:156195460-156203418,chr1:156195460-156202110		chr1:156195348-156195459			0.00	4.17	6.45	NA	5.26	NA	4.88	NA	5.00	0.00	1.96	0.00	2.17	0.00	3.33	0.00	0.00	0.00	8.33	0.00	0.00	NA	6.82	NA	11.11	8.33	8.33	6.25	6.06	NA	NA	4.00	0.00	0.00	5.00	0.00	4.53	0.00	-4.53	0.295508	0.709176
N	cassette	C1orf162	chr1	+	chr1:112020051-112020604;chr1:112019701-112020604;chr1:112019490-112020604	chr1:112019701-112020347,chr1:112019490-112020347,chr1:112020051-112020347;chr1:112020398-112020604		chr1:112020348-112020397			73.64	63.16	63.22	70.37	66.51	73.91	84.67	79.17	80.00	82.05	87.34	84.88	88.51	57.14	NA	86.36	88.76	87.34	66.38	60.00	72.34	67.86	66.44	76.67	91.43	65.22	64.91	95.00	80.60	79.41	58.82	55.41	61.31	66.67	63.78	64.20	75.53	62.61	-12.92	0.161392	0.709176
N	jcn_only_AA	SCAMP3	chr1	-	chr1:155228704-155230120;chr1:155228746-155230120	chr1:155228684-155230120		chr1:155228684-155228703;chr1:155228704-155228745	chr1:155228683-155228684;chr1:155228703-155228704		0.00	0.00	0.00	11.76	1.92	NA	0.00	2.04	1.12	0.00	0.00	1.33	0.00	0.00	0.00	2.74	0.00	0.00	7.69	4.00	0.00	0.00	1.43	0.00	0.00	2.38	1.61	3.03	0.00	0.00	3.64	0.00	4.26	2.22	1.39	4.76	0.00	2.21	2.21	0.990621	0.997790
K	alternative_donor	MRPL28	chr16	-	chr16:420226-420443;chr16:420226-420484	chr16:420226-420498		chr16:420444-420484;chr16:420485-420498	chr16:420484-420485;chr16:420498-420499		92.86	100.00	100.00	NA	NA	NA	100.00	100.00	95.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.928045	0.984606
N	cassette	SLC27A3	chr1	+	chr1:153751030-153751818	chr1:153751030-153751589;chr1:153751688-153751818		chr1:153751590-153751687			100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	NA	93.75	NA	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	0.00	0.391002	0.709410
K	jcn_only_AA	CUX1	chr7	+	chr7:101838884-101839913;chr7:101838884-101840219	chr7:101838884-101916636					96.97	93.18	94.37	NA	100.00	NA	88.68	76.47	60.87	71.74	76.92	74.07	81.94	61.76	57.14	70.27	77.97	73.17	100.00	100.00	100.00	90.91	95.65	95.24	100.00	93.88	93.10	100.00	100.00	100.00	100.00	97.50	100.00	88.37	95.45	96.63	96.59	95.42	-1.17	0.440409	0.706196
N	cassette	ITGAX	chr16	+	chr16:31374696-31382911;chr16:31374696-31382950	chr16:31374696-31382404;chr16:31382536-31382950,chr16:31382536-31382911		chr16:31382405-31382535			100.00	100.00	90.32	NA	92.86	NA	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	NA	95.31	100.00	100.00	NA	93.94	100.00	82.46	78.57	81.03	100.00	100.00	100.00	89.55	84.62	100.00	100.00	85.71	100.00	86.49	84.48	84.68	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	AUP1	chr2	-	chr2:74754280-74754374;chr2:74754179-74754374	chr2:74754249-74754374		chr2:74754179-74754248;chr2:74754249-74754279	chr2:74754178-74754179;chr2:74754248-74754249		100.00	100.00	100.00	95.00	100.00	100.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	83.33	91.30	100.00	100.00	82.35	100.00	100.00	100.00	100.00	100.00	95.00	100.00	88.89	97.30	100.00	100.00	88.24	100.00	100.00	0.00	0.465986	0.727551
K	intron_retention	SASH3	chrX	+	chrX:128926813-128926964				chrX:128926812-128926813;chrX:128926964-128926965		5.21	5.00	11.69	NA	12.00	NA	0.00	0.68	0.00	NA	0.88	0.00	0.00	0.83	0.00	NA	0.96	NA	6.25	2.63	5.00	NA	10.29	NA	0.00	5.50	6.33	NA	9.80	NA	4.55	9.76	6.25	NA	5.56	0.00	2.50	3.59	1.09	0.704891	1.000000
K	jcn_only_AD	SUPT4H1	chr17	-	chr17:56428870-56429384;chr17:56428870-56429427	chr17:56428870-56429425		chr17:56429385-56429425;chr17:56429426-56429427	chr17:56429425-56429426;chr17:56429427-56429428		10.74	22.22	12.50	0.00	17.91	17.65	21.53	12.05	13.58	21.28	21.09	18.60	18.12	12.24	13.02	21.90	15.00	15.07	16.33	8.77	11.84	11.63	16.54	22.41	17.65	12.09	13.48	17.50	17.44	17.31	9.20	7.10	12.07	19.30	13.89	17.58	17.88	11.39	-6.49	0.003668	0.177805
K	cassette	TNFSF13B	chr13	+	chr13:108939208-108955600	chr13:108939208-108955123;chr13:108955242-108955600		chr13:108955124-108955241			6.85	0.00	9.09	NA	NA	9.43	2.70	4.32	2.67	0.00	3.12	5.24	5.56	11.08	4.66	5.56	3.57	9.09	NA	7.59	0.00	NA	0.00	7.46	NA	12.25	6.45	17.65	9.09	13.33	6.96	2.94	0.00	9.09	4.55	8.29	1.35	7.28	5.93	0.011084	0.314700
N	jcn_only_AA	ADSL	chr22	+	chr22:40756497-40757091;chr22:40756497-40760279	chr22:40756497-40757276					90.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	95.00	90.00	95.65	98.04	100.00	100.00	100.00	96.77	100.00	100.00	100.00	84.62	100.00	100.00	100.00	93.48	95.35	100.00	97.50	-2.50	0.129065	0.663989
N	alternative_donor	IL4I1	chr19	-	chr19:50398438-50399140;chr19:50398438-50399071	chr19:50398438-50399182		chr19:50399072-50399140;chr19:50399141-50399182	chr19:50399140-50399141;chr19:50399182-50399183		7.14	10.34	5.77	9.09	4.08	2.17	5.06	5.66	3.94	5.88	4.14	3.99	0.00	5.47	4.78	7.09	3.45	5.09	0.00	4.07	3.68	3.75	5.49	7.62	NA	4.61	5.86	0.00	8.33	3.86	5.10	4.32	0.00	4.05	6.80	7.53	0.00	5.29	5.29	0.339010	0.650093
K	alternative_first_exon	LAIR1,ZNF780B	chr19	-	chr19:54875938-54876636,chr19:54875938-54879790,chr19:54875938-54879918,chr19:54875938-54880624,chr19:54875938-54885936,chr19:54875938-54887216,chr19:54875938-54887510,chr19:54875938-54900664;chr19:54875938-54881868	chr19:54875938-54876377	chr19:54881869-54882165	chr19:54876378-54876602			97.21	100.00	97.35	100.00	96.97	NA	97.88	98.33	98.72	98.42	97.10	99.29	93.68	98.37	99.13	98.34	96.50	98.78	100.00	98.13	100.00	97.56	96.64	96.97	100.00	96.69	98.87	95.35	94.90	98.80	97.33	98.32	100.00	96.21	94.74	98.27	100.00	97.73	-2.27	0.429959	0.573996
N	jcn_only_AD	BIVM-ERCC5,ERCC5	chr13	+	chr13:103520608-103524547	chr13:103520613-103524547		chr13:103520608-103520612	chr13:103520607-103520608		0.00	0.00	6.06	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.55	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.632235	0.817497
N	jcn_only_AD	AOAH	chr7	-	chr7:36589082-36589490;chr7:36589082-36589700	chr7:36589082-36616179		chr7:36589491-36589700;chr7:36589701-36616179	chr7:36589700-36589701;chr7:36616179-36616180		100.00	96.30	97.67	95.24	100.00	100.00	100.00	98.48	98.59	100.00	100.00	100.00	100.00	100.00	98.98	100.00	100.00	100.00	95.65	96.88	100.00	100.00	96.88	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.67	93.18	96.55	98.00	96.06	96.30	100.00	3.70	0.179700	0.657607
N	jcn_only_AA	LYL1	chr19	-	chr19:13212010-13213344;chr19:13213253-13213344	chr19:13211863-13213344		chr19:13211863-13212009;chr19:13212010-13213252	chr19:13211862-13211863;chr19:13212009-13212010		8.00	3.80	16.67	NA	10.00	NA	21.28	7.69	NA	NA	17.95	NA	8.00	10.53	NA	NA	6.67	NA	12.12	20.00	20.00	NA	6.82	NA	6.25	0.00	6.25	NA	18.42	NA	NA	17.65	16.28	NA	4.55	NA	10.06	8.00	-2.06	0.638595	0.838192
N	alternative_donor	UFC1	chr1	+	chr1:161123737-161126739;chr1:161123911-161126739	chr1:161123861-161126739		chr1:161123737-161123860;chr1:161123861-161123910	chr1:161123736-161123737;chr1:161123860-161123861		0.00	0.00	2.00	0.00	0.00	NA	1.47	0.00	0.00	0.00	2.70	0.00	0.00	0.00	1.79	1.96	1.69	0.00	0.00	3.12	2.27	5.56	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.278162	0.648887
N	cassette	UBE2J2	chr1	-	chr1:1198767-1208232;chr1:1198767-1209045	chr1:1198767-1203241;chr1:1203373-1209045,chr1:1203373-1208232		chr1:1203242-1203372			84.00	93.75	96.67	90.00	95.24	NA	100.00	91.30	90.62	93.85	96.15	94.87	94.59	91.67	93.75	92.96	91.53	100.00	NA	100.00	92.86	93.10	95.45	92.59	NA	100.00	92.86	100.00	92.59	94.74	100.00	93.10	83.33	93.55	91.18	94.87	94.17	95.84	1.67	0.732137	0.906297
N	jcn_only_AA	MITD1	chr2	-	chr2:99784176-99786012;chr2:99785896-99786012;chr2:99778132-99786012;chr2:99785934-99786012	chr2:99784311-99786012		chr2:99778132-99784175;chr2:99784176-99784310;chr2:99784311-99785895;chr2:99785896-99785933	chr2:99778131-99778132;chr2:99784175-99784176;chr2:99784310-99784311;chr2:99785895-99785896		6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	PQBP1	chrX	+	chrX:48758531-48759206	chrX:48758579-48759206		chrX:48758531-48758578	chrX:48758530-48758531		100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	LRCH4,RP11-44M6.7	chr7	-	chr7:100173947-100174316				chr7:100173946-100173947;chr7:100174316-100174317		4.26	4.17	7.24	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	2.86	0.00	0.00	0.00	0.80	3.06	1.92	4.17	3.80	4.17	4.60	3.15	5.15	4.17	0.00	3.23	1.18	4.83	1.80	4.44	5.97	2.99	1.30	2.66	1.36	0.997605	1.000000
K	alternative_last_exon	C17orf80	chr17	+	chr17:71239143-71243379	chr17:71239143-71241306	chr17:71243380-71245086	chr17:71241307-71241483			5.88	0.00	0.00	NA	5.88	NA	0.00	0.00	5.88	NA	0.00	NA	0.00	7.69	5.88	9.09	6.25	NA	7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.00	NA	NA	0.00	10.00	NA	6.67	NA	0.00	0.00	0.00	0.955721	0.972989
N	alternative_acceptor	SUGP2	chr19	-	chr19:19102552-19104446;chr19:19101959-19104446	chr19:19102350-19104446		chr19:19101959-19102349;chr19:19102350-19102551	chr19:19101958-19101959;chr19:19102349-19102350		39.13	31.31	32.43	17.07	26.47	32.35	NA	NA	NA	NA	NA	NA	31.25	NA	33.33	NA	NA	NA	34.67	35.71	31.25	17.39	27.66	25.00	40.86	28.57	25.64	28.57	27.66	29.41	23.81	30.30	25.35	24.24	22.50	28.00	31.31	32.14	0.83	0.843768	0.944616
K	intron_retention	TBC1D17	chr19	+	chr19:50385410-50385498				chr19:50385409-50385410;chr19:50385498-50385499		70.83	6.06	47.46	40.00	23.33	84.62	2.86	79.17	42.86	36.36	11.54	NA	0.00	93.02	59.26	23.08	9.09	NA	41.18	71.74	61.11	62.50	57.45	70.97	0.00	80.33	41.18	55.00	20.00	77.78	51.61	28.30	7.41	21.88	55.10	51.02	4.46	75.45	71.00	0.000087	0.172516
K	intron_retention		chr1	+	chr1:989932-990203				chr1:989931-989932;chr1:990203-990204		6.73	4.26	6.78	4.00	4.76	3.33	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.59	2.94	0.00	7.14	0.00	0.00	8.33	3.45	11.76	7.50	16.67	0.00	6.98	0.00	6.25	0.00	10.26	6.52	3.08	0.00	8.82	18.18	6.48	0.00	6.62	6.62	0.204263	1.000000
N	jcn_only_AA	ZNF335	chr20	-	chr20:44577717-44577808	chr20:44577720-44577808		chr20:44577717-44577719	chr20:44577716-44577717		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	cassette	IKBKB	chr8	+	chr8:42176940-42178252	chr8:42176940-42177102;chr8:42177165-42178252		chr8:42177103-42177164			100.00	100.00	92.86	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.00	100.00	NA	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	SAT2	chr17	-	chr17:7530733-7530874;chr17:7530733-7530859	chr17:7530733-7530870					85.00	88.76	90.91	100.00	91.57	87.10	92.31	93.59	91.07	100.00	90.91	100.00	88.64	91.40	90.48	92.50	91.18	94.44	93.33	86.15	88.89	90.91	89.39	88.24	89.36	89.39	90.38	92.31	92.31	94.44	86.67	88.46	88.89	91.67	91.84	91.89	89.12	88.03	-1.09	0.371511	0.657607
N	alternative_acceptor	RNH1	chr11	-	chr11:499924-500483;chr11:500015-500483	chr11:500000-500483		chr11:499924-499999;chr11:500000-500014	chr11:499923-499924;chr11:499999-500000		96.88	95.83	100.00	92.50	95.48	97.14	96.21	97.59	98.59	96.95	97.77	96.55	94.79	95.33	95.05	92.83	94.55	97.89	94.00	94.92	94.44	92.04	94.44	96.23	93.41	90.91	92.68	95.87	95.07	94.39	94.59	95.45	94.06	93.98	92.93	94.42	94.43	95.12	0.70	0.770236	0.914744
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4821386-4822946	chr7:4821386-4822426		chr7:4822427-4822946	chr7:4822946-4822947		21.43	17.65	19.44	NA	8.33	NA	3.12	2.56	4.00	3.12	3.70	5.00	2.27	3.33	4.88	3.57	2.94	0.00	NA	12.50	NA	22.22	14.29	23.81	5.00	12.12	12.00	8.70	17.65	5.56	36.00	31.25	NA	32.26	26.67	33.33	4.06	12.31	8.25	0.256701	0.709013
K	alternative_last_exon	CHD1L,FAM102B	chr1	+	chr1:109172280-109187317	chr1:109172280-109177729	chr1:109187318-109187522	chr1:109177730-109181949			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.541211
K	intron_retention	ADAMTSL4	chr1	+	chr1:150529812-150529969				chr1:150529811-150529812;chr1:150529969-150529970		13.04	9.09	39.13	NA	0.00	0.00	0.00	4.00	0.00	NA	0.00	0.00	NA	3.33	6.98	NA	0.00	NA	0.00	30.00	NA	NA	0.00	45.45	16.67	30.00	6.67	NA	12.50	NA	NA	NA	NA	NA	NA	35.71	4.54	13.04	8.49	0.865503	1.000000
N	jcn_only_AA		chr14	+	chr14:103601689-103603218;chr14:103601689-103606009;chr14:103601689-103602150;chr14:103601689-103601959	chr14:103601689-103602145					97.62	100.00	96.20	100.00	100.00	NA	100.00	100.00	100.00	99.79	100.00	99.48	100.00	100.00	100.00	99.33	100.00	99.84	70.00	95.92	89.19	98.78	100.00	99.69	100.00	100.00	100.00	100.00	97.50	99.45	92.05	94.39	NA	98.45	100.00	98.83	100.00	98.81	-1.19	0.586723	0.809826
K	intron_retention		chr17	+	chr17:30695034-30696313				chr17:30695033-30695034;chr17:30696313-30696314		5.69	0.00	9.52	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	1.63	0.00	0.00	0.00	0.00	3.60	2.94	0.00	2.74	5.95	NA	5.49	0.00	1.49	0.00	1.11	8.96	6.67	NA	8.06	1.37	7.38	0.00	4.54	4.54	0.125400	1.000000
K	intron_retention	TTLL4	chr2	+	chr2:219617909-219618306				chr2:219617908-219617909;chr2:219618306-219618307		14.29	11.11	15.00	NA	4.76	NA	4.17	NA	NA	0.00	0.00	NA	0.00	0.00	NA	2.56	0.00	NA	9.09	5.26	0.00	6.67	12.20	NA	NA	NA	10.00	7.69	0.00	NA	17.39	0.00	4.35	5.71	10.53	0.00	4.35	9.77	5.42	0.806351	1.000000
K	alternative_acceptor	XPO6	chr16	-	chr16:28117774-28118842	chr16:28117819-28118842		chr16:28117774-28117818	chr16:28117773-28117774		97.92	100.00	100.00	NA	NA	NA	100.00	97.87	96.55	100.00	96.88	100.00	100.00	100.00	100.00	96.43	94.59	94.12	NA	95.56	90.91	100.00	100.00	96.15	NA	97.83	100.00	95.45	100.00	100.00	94.74	95.65	100.00	96.55	96.15	97.22	100.00	97.85	-2.15	0.017782	0.508745
K	intron_retention		chr17	+	chr17:41164295-41165063				chr17:41164294-41164295;chr17:41165063-41165064		3.98	5.26	5.97	2.04	5.41	3.29	0.00	1.44	1.86	0.00	0.00	1.60	0.00	1.65	2.07	2.40	0.00	1.33	2.50	3.80	2.48	5.88	3.45	7.98	5.88	4.59	8.43	6.32	2.94	3.62	3.80	3.77	0.00	11.21	9.09	5.81	1.25	3.80	2.55	0.828900	1.000000
N	jcn_only_AA	SUPT5H	chr19	+	chr19:39964162-39964586;chr19:39964162-39964602	chr19:39964162-39964717		chr19:39964587-39964602;chr19:39964603-39964717	chr19:39964602-39964603;chr19:39964717-39964718		2.02	0.00	2.40	0.00	1.01	12.50	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00	4.76	1.75	3.85	0.00	5.33	1.71	4.76	0.00	2.50	3.28	3.31	2.47	2.41	7.50	2.02	0.00	2.13	2.13	0.101397	0.663989
N	alternative_acceptor	RALGDS	chr9	-	chr9:135975770-135976906	chr9:135975976-135976906		chr9:135975770-135975975	chr9:135975769-135975770		4.76	9.38	5.17	10.00	4.76	NA	4.76	0.00	0.00	0.00	0.00	0.00	4.00	0.00	7.14	1.67	0.00	3.70	0.00	6.49	4.55	5.26	7.14	5.88	NA	8.33	5.56	4.35	3.57	0.00	11.76	5.88	5.26	4.48	5.26	2.94	4.76	5.62	0.87	0.827576	0.940678
N	cassette	CNPY3	chr6	+	chr6:42897460-42903149;chr6:42897460-42903311	chr6:42897460-42902212;chr6:42902337-42903311,chr6:42902337-42903149		chr6:42902213-42902336			94.23	97.92	97.26	100.00	95.20	97.44	90.51	88.57	83.33	90.14	92.44	95.45	92.57	92.50	92.31	89.55	88.99	96.00	97.92	100.00	90.32	98.11	96.23	96.92	92.38	100.00	93.15	100.00	100.00	100.00	100.00	94.23	95.21	100.00	96.19	100.00	93.89	97.12	3.23	0.550389	0.819779
N	jcn_only_AA	MITD1	chr2	-	chr2:99785896-99786012;chr2:99778132-99786012;chr2:99785934-99786012;chr2:99784311-99786012	chr2:99784176-99786012		chr2:99778132-99784175;chr2:99784176-99784310;chr2:99784311-99785895;chr2:99785896-99785933	chr2:99778131-99778132;chr2:99784175-99784176;chr2:99784310-99784311;chr2:99785895-99785896		0.00	3.51	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	NA	4.55	0.00	6.67	NA	8.00	NA	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	5.66	0.00	0.00	0.00	4.55	1.54	0.00	0.00	0.00	5.41	1.75	0.00	-1.75	0.247231	0.663989
K	intron_retention	DGKZ	chr11	+	chr11:46391560-46392862				chr11:46391559-46391560;chr11:46392862-46392863		0.00	0.00	4.76	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	2.56	0.00	10.00	0.00	1.72	NA	0.00	NA	0.00	2.22	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	intron_retention	MNDA	chr1	+	chr1:158817680-158818979				chr1:158817679-158817680;chr1:158818979-158818980		80.99	87.18	84.62	NA	100.00	71.25	83.33	74.17	82.81	70.00	70.59	66.67	76.47	78.42	79.59	79.17	73.33	59.09	68.75	68.99	64.15	73.33	79.17	81.63	73.97	81.63	75.00	86.84	79.31	75.81	73.08	71.88	63.44	82.61	68.75	83.20	75.22	76.30	1.08	0.880241	1.000000
N	alternative_acceptor	MCM3AP	chr21	-	chr21:47656809-47660724	chr21:47656894-47660724		chr21:47656809-47656893	chr21:47656808-47656809		100.00	100.00	100.00	100.00	98.41	97.22	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.47	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr22	+	chr22:40803573-40803792				chr22:40803572-40803573;chr22:40803792-40803793		17.39	25.53	24.00	NA	13.04	NA	0.00	10.00	0.00	0.00	0.00	0.00	2.08	NA	17.65	0.00	3.23	0.00	11.54	16.67	12.50	18.18	21.62	30.00	17.65	25.00	22.58	18.18	17.14	16.67	21.43	18.18	12.00	16.67	33.33	18.18	11.77	17.39	5.62	0.653045	1.000000
N	alternative_acceptor	NFKBID	chr19	-	chr19:36379515-36380791;chr19:36379596-36380791	chr19:36380607-36380791		chr19:36379515-36379595;chr19:36379596-36380606	chr19:36379514-36379515;chr19:36379595-36379596		5.17	2.50	3.85	0.00	1.23	NA	NA	NA	NA	0.00	8.33	NA	NA	NA	10.00	NA	9.09	0.00	4.35	4.08	0.00	2.86	3.11	5.88	0.00	9.38	2.86	4.17	3.70	NA	2.22	3.28	1.92	3.66	4.04	2.33	2.21	4.62	2.42	0.148739	0.651394
K	intron_retention		chr19	+	chr19:10202030-10202151				chr19:10202029-10202030;chr19:10202151-10202152		45.83	25.00	36.67	53.85	41.18	45.26	7.69	15.12	11.11	12.50	14.29	11.59	10.00	18.52	27.94	16.67	13.64	15.38	23.08	35.79	36.36	50.00	50.00	40.54	NA	37.65	41.94	54.90	58.33	49.15	40.00	41.67	50.00	61.29	50.00	44.78	23.08	36.72	13.64	0.666949	1.000000
N	alternative_acceptor	DGKA,HSP90B1	chr12	+	chr12:104341209-104347163;chr12:104341209-104344022	chr12:104341209-104341410		chr12:104341411-104344022;chr12:104344023-104347163	chr12:104344022-104344023;chr12:104347163-104347164		100.00	100.00	100.00	100.00	100.00	100.00	82.00	75.00	68.57	77.78	80.00	77.42	82.69	75.00	61.54	75.00	69.57	83.33	100.00	100.00	96.77	100.00	100.00	100.00	100.00	92.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	-4.00	0.559269	0.828583
K	intron_retention	VSIG4	chrX	-	chrX:65242343-65242682				chrX:65242342-65242343;chrX:65242682-65242683		12.50	6.32	20.41	1.28	4.74	0.00	1.81	0.00	0.00	0.38	1.76	0.95	3.03	2.59	0.00	2.08	3.18	0.68	7.41	7.50	14.29	1.08	3.53	0.00	1.45	1.56	16.49	0.78	5.76	0.42	0.00	7.69	6.76	1.59	5.26	1.17	4.67	2.08	-2.60	0.918539	1.000000
K	cassette	C20orf24,TGIF2-C20orf24	chr20	+	chr20:35236404-35240412;chr20:35236222-35240412	chr20:35236222-35238003,chr20:35236404-35238003;chr20:35238134-35240412		chr20:35238004-35238133			93.01	86.62	93.93	94.03	90.73	97.56	96.07	95.64	96.19	95.90	97.65	95.24	96.45	96.25	96.12	95.24	96.39	95.89	94.34	94.19	93.92	93.62	96.08	94.59	100.00	95.40	93.73	94.24	94.23	90.98	93.83	94.49	94.19	94.14	95.09	94.44	95.20	94.80	-0.41	0.956048	0.987629
N	alternative_donor	ABRACL	chr6	+	chr6:139349696-139355291;chr6:139350450-139355291;chr6:139350013-139355291;chr6:139349951-139355291	chr6:139354993-139355291		chr6:139349696-139349950;chr6:139349951-139350012;chr6:139350013-139350449;chr6:139350450-139354992	chr6:139349695-139349696;chr6:139349950-139349951;chr6:139350012-139350013;chr6:139350449-139350450		2.22	0.00	6.06	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	HNMT	chr2	+	chr2:138759914-138762701;chr2:138759765-138762701	chr2:138761703-138762701		chr2:138759765-138759913;chr2:138759914-138761702	chr2:138759764-138759765;chr2:138759913-138759914		4.00	0.00	4.63	NA	NA	NA	0.47	0.54	0.00	0.00	2.63	0.00	1.09	0.87	3.12	0.00	2.35	0.00	NA	1.69	0.00	0.00	3.23	0.00	NA	1.78	2.14	5.88	3.64	0.00	0.00	1.92	0.00	5.26	4.00	0.00	0.23	1.28	1.04	0.129072	0.540946
N	jcn_only_AD	FIG4	chr6	+	chr6:110107653-110110796	chr6:110110117-110110796		chr6:110107653-110110116	chr6:110107652-110107653		15.38	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	12.00	9.68	NA	0.00	NA	0.00	NA	9.09	NA	0.00	0.00	0.00	11.11	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.182118	0.657607
K	cassette	HPS1	chr10	-	chr10:100189400-100190327	chr10:100189400-100189547;chr10:100189647-100190327		chr10:100189548-100189646			59.18	44.44	45.16	47.83	48.94	46.15	78.26	70.00	70.73	70.45	71.28	73.81	65.71	67.31	74.07	57.97	68.18	69.05	37.50	46.43	48.72	43.64	33.88	38.71	27.27	64.71	43.66	44.19	47.73	52.50	68.18	68.33	57.14	55.81	55.06	60.91	50.79	66.01	15.22	0.239659	0.709176
N	jcn_only_AA	AES	chr19	-	chr19:3055939-3056309;chr19:3055725-3056309	chr19:3053457-3056309		chr19:3053457-3055724;chr19:3055725-3055938	chr19:3053456-3053457;chr19:3055724-3055725		2.25	4.10	0.00	0.00	5.26	13.24	0.00	1.36	2.55	0.00	0.99	1.54	1.15	2.54	1.35	1.35	0.00	1.79	9.70	2.56	6.37	0.00	3.47	0.00	14.17	1.49	2.74	0.00	0.00	3.80	3.76	2.96	8.66	0.00	3.32	1.19	6.38	2.40	-3.98	0.137207	0.663989
K	intron_retention		chr17	-	chr17:4688955-4689195				chr17:4688954-4688955;chr17:4689195-4689196		21.00	35.56	50.00	NA	29.41	11.76	0.00	5.00	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	15.79	11.43	21.21	NA	NA	NA	4.81	5.47	22.22	NA	10.53	NA	58.82	76.92	63.64	NA	NA	NA	15.79	11.43	-4.36	0.963760	1.000000
N	cassette	SSR1	chr6	-	chr6:7290165-7298979	chr6:7290165-7298155;chr6:7298235-7298979		chr6:7298156-7298234			100.00	100.00	100.00	NA	100.00	NA	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	C11orf98,LBHD1	chr11	-	chr11:62430632-62430707				chr11:62430631-62430632;chr11:62430707-62430708		2.90	4.33	3.80	5.48	1.78	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.80	5.43	3.50	5.88	4.59	7.41	1.10	2.16	1.43	1.52	2.54	3.03	9.32	9.69	6.30	4.23	5.62	4.84	2.45	2.53	0.08	0.942505	1.000000
N	alternative_acceptor	MYO1F	chr19	-	chr19:8615567-8616623	chr19:8615579-8616623		chr19:8615567-8615578	chr19:8615566-8615567		90.48	90.91	93.67	NA	90.00	NA	90.72	87.50	90.48	100.00	94.00	87.50	88.12	89.71	100.00	93.75	100.00	NA	83.33	86.15	90.48	76.92	91.53	100.00	100.00	91.84	89.11	100.00	85.71	NA	100.00	93.88	100.00	88.46	100.00	100.00	90.81	90.09	-0.72	0.722496	0.896493
K	jcn_only_AD	MKNK1	chr1	-	chr1:47059953-47069898	chr1:47059953-47069856		chr1:47069857-47069898	chr1:47069898-47069899		72.22	78.57	72.00	NA	58.33	NA	71.43	69.23	73.68	70.59	72.88	63.64	70.83	70.83	73.68	80.77	62.50	75.00	81.82	76.47	NA	NA	68.75	NA	NA	92.86	68.42	75.00	56.52	NA	NA	78.57	70.00	60.00	70.59	NA	71.43	72.22	0.79	0.727714	0.859025
K	jcn_only_AA	ARL6IP4,CRADD	chr12	+	chr12:123465814-123466141	chr12:123465814-123466117		chr12:123466118-123466141	chr12:123466141-123466142		26.09	18.18	33.33	16.22	25.00	21.74	25.27	22.22	36.96	7.55	6.52	0.00	15.38	18.75	27.03	17.74	10.59	8.57	29.87	35.00	14.06	21.74	20.97	26.92	14.00	25.00	22.22	21.74	12.24	12.50	30.77	30.00	14.93	14.29	13.64	20.51	16.78	25.55	8.77	0.090075	0.663989
K	alternative_acceptor	RNF10	chr12	+	chr12:121000874-121001136;chr12:121000874-121001243;chr12:121000874-121001149	chr12:121000874-121001134		chr12:121001135-121001136;chr12:121001137-121001149;chr12:121001150-121001243	chr12:121001136-121001137;chr12:121001149-121001150;chr12:121001243-121001244		7.89	0.00	6.67	5.26	5.88	NA	5.26	6.59	6.00	10.77	10.45	5.17	5.63	7.69	6.98	6.98	7.69	10.42	0.00	5.80	5.71	8.06	6.10	7.58	7.69	4.71	4.40	5.56	5.00	5.17	8.20	9.00	6.25	7.76	11.24	9.16	5.45	7.14	1.70	0.112255	0.605363
K	intron_retention		chr5	-	chr5:176308849-176308944				chr5:176308848-176308849;chr5:176308944-176308945		2.41	0.75	0.00	0.00	3.80	3.85	0.00	0.74	0.00	0.00	0.72	0.00	0.56	0.91	0.00	0.00	0.48	0.00	0.94	1.04	1.69	0.00	6.67	0.00	0.00	2.72	3.95	2.56	4.85	0.00	1.37	3.70	0.78	2.94	3.23	0.91	0.66	1.21	0.55	0.819935	1.000000
N	alternative_donor	FDPS	chr1	+	chr1:155288083-155288455	chr1:155288169-155288455		chr1:155288083-155288168	chr1:155288082-155288083		11.90	0.00	8.96	0.00	7.69	0.00	0.00	0.00	2.00	0.00	0.00	2.56	0.85	7.14	3.57	1.59	1.79	0.00	2.33	8.33	1.49	12.50	9.52	6.67	0.00	11.11	6.56	0.00	4.35	3.57	12.50	11.36	6.90	2.70	5.13	6.67	0.42	9.72	9.29	0.014632	0.251776
K	jcn_only_AD	GNG5,SCAMP3	chr1	-	chr1:155226583-155227088;chr1:155226583-155228616	chr1:155226583-155227075					70.37	85.90	86.79	100.00	77.42	81.82	98.53	95.56	95.77	100.00	100.00	100.00	100.00	95.65	94.74	98.57	98.08	100.00	82.67	90.00	80.22	85.71	80.70	85.71	76.19	95.56	77.42	86.67	87.76	94.00	91.07	75.38	69.51	79.49	77.55	86.49	84.28	93.31	9.03	0.520639	0.754861
K	intron_retention	DDX39A	chr19	-	chr19:14519765-14519848				chr19:14519764-14519765;chr19:14519848-14519849		4.35	4.08	4.08	1.18	2.25	2.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	1.92	5.17	0.00	2.42	1.25	3.39	2.56	2.56	0.00	0.00	1.90	17.89	7.46	9.32	4.00	1.00	1.23	2.72	2.24	-0.48	0.868079	1.000000
K	intron_retention		chr11	-	chr11:67207735-67207805				chr11:67207734-67207735;chr11:67207805-67207806		6.41	3.14	6.07	0.00	4.18	0.00	0.48	0.38	1.01	0.00	0.82	0.00	0.50	0.00	0.56	0.00	0.56	0.00	5.31	2.87	4.10	1.25	3.53	3.80	5.74	3.59	4.17	2.00	3.68	3.70	6.87	6.27	4.98	1.83	4.37	1.11	4.06	3.23	-0.83	0.944741	1.000000
K	alternative_acceptor	LILRA6,LILRB3	chr19	-	chr19:54721344-54722229	chr19:54721347-54722229		chr19:54721344-54721346	chr19:54721343-54721344		16.79	12.07	11.72	12.37	20.00	14.21	9.76	11.03	15.04	14.07	13.33	18.69	11.43	12.80	5.17	16.67	26.92	20.29	18.42	19.51	14.88	16.67	10.00	10.53	13.64	19.87	19.40	19.15	17.05	19.41	23.08	24.79	22.58	21.43	29.27	29.15	12.86	18.15	5.29	0.376079	0.709013
N	jcn_only_AD	PCIF1	chr20	+	chr20:44572405-44573506	chr20:44572960-44573506		chr20:44572405-44572959	chr20:44572404-44572405		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.55	NA	NA	NA	9.09	0.00	4.76	16.67	0.00	NA	NA	0.00	0.00	11.11	0.00	0.00	0.00	0.00	3.23	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	alternative_donor	MAN2B2	chr4	+	chr4:6620865-6621653;chr4:6619335-6621653	chr4:6619220-6621653		chr4:6619220-6619334;chr4:6619335-6620864	chr4:6619219-6619220;chr4:6619334-6619335		93.88	92.86	85.96	NA	NA	NA	96.08	95.24	97.37	97.30	94.12	97.67	94.64	97.22	94.29	94.44	92.45	96.97	NA	88.24	NA	100.00	90.62	95.83	NA	88.89	91.38	92.31	95.45	92.31	94.59	90.57	90.00	91.30	90.32	91.30	93.75	94.23	0.48	0.850441	0.958191
K	intron_retention	CLK2	chr1	-	chr1:155233832-155234011				chr1:155233831-155233832;chr1:155234011-155234012		3.39	0.00	6.67	5.26	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	5.41	5.88	3.12	11.36	2.78	0.00	0.00	3.51	6.90	2.70	2.38	4.26	7.41	3.12	2.50	4.88	3.17	0.00	1.70	1.70	0.412329	1.000000
K	intron_retention		chr4	+	chr4:110605803-110606406				chr4:110605802-110605803;chr4:110606406-110606407		7.27	0.00	11.76	2.86	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	7.32	7.21	5.63	0.00	3.92	8.00	1.82	0.88	3.06	8.70	6.67	2.78	6.00	6.00	6.94	0.00	3.58	3.58	0.680384	1.000000
N	alternative_last_exon	MIR34AHG	chr1	-	chr1:9171549-9242065	chr1:9211895-9242065	chr1:9171335-9171548	chr1:9208070-9211894			100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	94.44	NA	94.12	NA	92.86	100.00	100.00	100.00	95.65	100.00	100.00	100.00	0.00	0.391002	0.557291
K	alternative_last_exon	DCBLD1	chr6	+	chr6:117866761-117868764;chr6:117866761-117890782	chr6:117866761-117869069	chr6:117890783-117891021	chr6:117869070-117870960			93.75	87.50	89.19	NA	93.10	81.82	81.25	64.29	77.78	NA	85.71	81.82	88.89	78.57	82.61	78.57	85.00	76.19	85.00	NA	90.91	90.00	91.43	88.24	100.00	92.86	100.00	NA	95.83	88.89	NA	90.91	80.00	78.57	91.67	93.75	86.25	85.72	-0.53	0.563668	0.705266
K	intron_retention	ATP5D	chr19	+	chr19:1244185-1244313				chr19:1244184-1244185;chr19:1244313-1244314		1.89	0.35	0.00	0.00	0.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.17	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.20	3.75	1.06	0.00	0.00	0.00	0.09	0.00	-0.09	0.625070	1.000000
K	jcn_only_AA	MYO1F	chr19	-	chr19:8601482-8601832	chr19:8601531-8601832		chr19:8601482-8601530	chr19:8601481-8601482		6.90	4.83	6.30	7.14	3.60	NA	0.59	1.57	0.00	0.00	0.69	0.00	0.97	2.16	1.15	0.00	0.68	0.00	2.86	5.98	3.70	0.00	4.17	4.44	0.00	2.80	3.99	4.88	3.05	0.00	5.88	5.36	5.22	0.00	3.82	0.00	1.92	4.34	2.42	0.198627	0.663989
N	alternative_last_exon	FCGR3B	chr1	-	chr1:161512990-161595934	chr1:161594430-161595934	chr1:161511549-161512989	chr1:161592986-161594429			93.33	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	NA	94.12	97.44	NA	NA	94.44	NA	0.00	86.67	NA	NA	NA	NA	0.00	93.10	85.71	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	93.22	93.22	0.059989	0.256109
K	intron_retention	BAK1	chr6	-	chr6:33541685-33541810				chr6:33541684-33541685;chr6:33541810-33541811		4.71	0.00	2.17	NA	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.35	0.00	0.00	0.00	0.00	NA	1.61	7.14	0.00	0.00	5.88	0.00	3.33	7.14	3.33	0.00	2.86	2.63	7.89	NA	0.00	2.78	3.23	0.00	2.12	2.12	0.292452	1.000000
N	cassette	SOD1	chr21	+	chr21:33032155-33039570	chr21:33032155-33038761;chr21:33038832-33039570		chr21:33038762-33038831			100.00	100.00	94.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.44	100.00	100.00	100.00	100.00	97.89	100.00	99.34	100.00	100.00	97.70	100.00	100.00	100.00	98.37	97.40	97.30	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175686	0.709176
K	cassette	RHOC,RP11-426L16.10	chr1	-	chr1:113246429-113249699	chr1:113246429-113247721;chr1:113247791-113249699		chr1:113247722-113247790			53.71	41.54	42.50	47.42	40.32	50.63	62.70	71.84	74.24	68.04	62.92	69.80	68.99	78.97	74.14	74.24	59.00	68.29	44.83	54.26	55.21	55.97	39.50	57.07	72.00	51.10	41.12	58.39	54.84	67.11	50.38	46.60	42.42	56.63	51.35	62.21	53.77	53.98	0.22	0.555934	0.821548
K	jcn_only_AA	CRTC2	chr1	-	chr1:153925112-153925280	chr1:153925127-153925280		chr1:153925112-153925126	chr1:153925111-153925112		18.75	0.00	15.04	NA	NA	NA	21.88	21.95	12.24	14.81	3.45	11.11	17.86	25.64	17.19	9.30	12.90	15.79	NA	17.14	10.00	11.76	17.65	14.29	31.25	11.48	18.48	25.00	35.00	7.69	18.75	17.54	18.18	25.00	8.33	14.29	18.18	18.75	0.57	0.844801	0.938257
N	jcn_only_AD	CA3-AS1,NSMAF	chr8	-	chr8:59498321-59498456	chr8:59498321-59498447		chr8:59498448-59498456	chr8:59498456-59498457		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	4.35	0.00	0.00	4.62	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.55	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.637278	0.818639
K	cassette	HNRNPH3	chr10	+	chr10:70097091-70098259	chr10:70097091-70097614;chr10:70097754-70098259		chr10:70097615-70097753			58.70	60.00	64.00	70.00	69.57	NA	93.24	88.57	80.95	95.20	91.53	88.24	91.00	89.86	74.07	89.52	95.20	91.89	NA	57.45	57.14	68.97	74.24	67.61	NA	60.61	63.16	83.58	92.21	82.35	27.45	30.38	40.00	66.20	63.89	55.95	75.50	59.66	-15.84	0.663661	0.876605
K	intron_retention		chr20	-	chr20:62333570-62337708				chr20:62333569-62333570;chr20:62337708-62337709		2.78	0.00	11.11	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	0.00	0.00	0.00	0.00	5.56	2.33	0.00	3.57	2.27	0.00	0.00	5.00	0.00	0.00	1.56	0.00	4.35	0.00	2.86	3.23	5.21	0.00	0.00	0.00	0.474487	1.000000
N	jcn_only_AA	QKI	chr6	+	chr6:163983102-163984451;chr6:163983102-163984454	chr6:163983102-163984475		chr6:163984452-163984454;chr6:163984455-163984475	chr6:163984454-163984455;chr6:163984475-163984476		6.12	0.00	9.86	NA	0.00	NA	7.19	9.55	11.58	11.29	14.16	11.02	10.33	7.14	10.43	6.10	12.83	20.80	NA	7.58	NA	11.11	16.67	9.52	NA	8.11	2.94	18.18	9.30	20.00	13.64	16.36	0.00	12.77	12.50	16.36	3.60	7.84	4.25	0.201021	0.663989
K	alternative_first_exon	MRPS24,URGCP-MRPS24	chr7	-	chr7:43908976-43909122,chr7:43908976-43909178,chr7:43908976-43911429;chr7:43908976-43921257	chr7:43908976-43909055	chr7:43921258-43921296	chr7:43909056-43909156			100.00	91.18	90.91	73.91	96.15	53.45	100.00	66.67	71.05	58.33	97.44	37.10	100.00	75.00	92.11	79.17	98.00	40.59	96.43	NA	97.30	76.67	96.15	53.57	100.00	NA	94.12	66.67	95.83	47.92	85.71	89.29	96.15	84.62	95.45	54.88	98.22	80.35	-17.86	0.119248	0.294808
N	jcn_only_AA	MAP3K11	chr11	-	chr11:65375288-65375392;chr11:65375235-65375392;chr11:65375165-65375392	chr11:65375169-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		5.75	6.49	4.39	0.00	0.00	NA	0.00	1.45	3.45	2.99	0.00	0.00	2.22	2.04	1.37	1.20	1.39	2.50	5.26	5.88	4.08	0.00	4.23	0.00	0.00	4.17	3.96	0.00	0.00	2.44	4.00	8.33	10.34	5.13	4.55	3.85	3.74	4.08	0.34	0.928449	0.977297
N	cassette	JTB	chr1	-	chr1:153949252-153949747;chr1:153949252-153949645;chr1:153948382-153949814;chr1:153949252-153949814	chr1:153948382-153949451,chr1:153949252-153949451;chr1:153949490-153949645,chr1:153949490-153949747,chr1:153949490-153949814		chr1:153949452-153949489			96.22	97.73	95.44	100.00	97.99	97.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.24	95.45	97.21	96.97	96.24	97.92	100.00	100.00	97.49	100.00	98.74	100.00	86.55	89.95	88.24	96.97	92.59	96.91	98.87	98.11	-0.76	0.819563	0.940840
N	alternative_acceptor	SNX8	chr7	-	chr7:2297457-2302864;chr7:2297430-2302864	chr7:2297439-2302864		chr7:2297430-2297438;chr7:2297439-2297456	chr7:2297429-2297430;chr7:2297438-2297439		100.00	100.00	95.83	100.00	100.00	94.55	100.00	100.00	100.00	100.00	98.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	98.44	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	97.22	100.00	100.00	96.08	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	SAT2	chr17	-	chr17:7530733-7530887				chr17:7530732-7530733;chr17:7530887-7530888		42.00	37.50	57.69	20.00	35.29	13.33	18.18	15.49	19.23	22.22	23.53	NA	28.00	16.00	25.00	17.65	28.57	15.38	42.86	43.24	27.27	NA	50.00	40.00	35.71	38.98	39.02	45.00	32.26	27.27	52.94	56.67	47.22	52.38	33.33	44.00	36.61	40.49	3.88	0.887701	1.000000
K	alternative_last_exon	THAP3	chr1	+	chr1:6692556-6692973;chr1:6692556-6694079	chr1:6692556-6692855	chr1:6694080-6695646	chr1:6692856-6693625			75.44	60.64	61.40	74.00	59.78	90.21	53.12	87.50	77.08	65.52	56.67	89.29	51.43	90.91	71.83	66.00	51.52	91.11	65.17	73.68	62.50	59.26	52.94	77.50	70.54	84.62	62.26	66.67	62.50	80.43	87.27	76.92	71.56	63.41	57.78	82.11	62.91	85.94	23.04	0.000963	0.084626
K	intron_retention	ACADVL	chr17	+	chr17:7123849-7123922				chr17:7123848-7123849;chr17:7123922-7123923		5.77	0.00	14.52	0.00	5.41	NA	0.81	4.11	0.00	0.59	1.94	0.00	0.71	5.17	2.91	1.28	1.72	0.53	NA	11.29	3.33	14.63	14.63	11.76	5.56	11.76	2.27	5.08	5.38	0.00	5.26	13.95	0.00	10.77	10.89	5.56	0.71	5.51	4.80	0.147810	1.000000
K	intron_retention	AUP1	chr2	-	chr2:74756063-74756258				chr2:74756062-74756063;chr2:74756258-74756259		29.23	33.33	33.80	22.22	20.00	NA	3.16	2.11	4.00	2.78	3.25	2.11	4.43	1.11	10.29	4.41	6.06	1.25	16.67	15.49	11.11	28.89	33.73	30.23	NA	19.30	31.65	13.04	17.53	17.86	31.58	35.21	15.00	31.48	26.67	22.78	15.00	17.39	2.39	0.948768	1.000000
N	cassette	PLK3	chr1	+	chr1:45268826-45269271	chr1:45268826-45268939;chr1:45269064-45269271		chr1:45268940-45269063			98.31	100.00	97.27	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.73	100.00	97.56	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	98.48	100.00	90.91	98.59	100.00	98.50	100.00	99.24	-0.76	0.595334	0.848084
K	intron_retention	METTL3	chr14	-	chr14:21966514-21967168				chr14:21966513-21966514;chr14:21967168-21967169		40.00	31.11	45.16	35.00	42.00	57.89	47.06	72.22	52.38	64.29	56.00	60.00	28.57	50.00	50.00	41.18	45.00	NA	26.00	42.11	30.00	58.82	44.19	54.55	54.84	62.50	59.26	25.00	34.29	48.00	47.37	41.67	26.19	56.25	37.50	38.10	29.84	48.69	18.85	0.457748	1.000000
K	cassette	AKR1A1	chr1	+	chr1:46033850-46034598	chr1:46033850-46034156;chr1:46034357-46034598		chr1:46034157-46034356			90.00	83.58	84.62	75.79	73.18	75.78	93.27	92.47	90.32	87.58	91.19	92.47	95.47	90.67	89.66	90.91	86.14	90.57	79.41	80.72	82.97	85.86	77.98	82.69	75.11	82.86	83.33	84.68	83.19	90.62	85.42	80.25	74.40	83.21	81.38	87.56	81.50	87.71	6.22	0.428552	0.736120
K	intron_retention	PRKAG1	chr12	-	chr12:49396654-49396747				chr12:49396653-49396654;chr12:49396747-49396748		95.24	89.86	92.45	100.00	100.00	100.00	93.48	88.89	100.00	100.00	93.33	94.12	87.23	100.00	93.10	100.00	94.92	87.50	92.50	94.44	94.29	95.00	100.00	90.00	100.00	100.00	90.24	86.36	93.33	93.75	88.57	97.83	92.11	100.00	92.68	100.00	92.31	94.84	2.53	0.709403	1.000000
K	intron_retention	MYL6	chr12	+	chr12:56554105-56554409				chr12:56554104-56554105;chr12:56554409-56554410		19.02	5.22	35.71	5.88	6.77	1.25	1.15	2.29	8.93	3.45	1.99	1.41	3.25	3.75	9.90	2.59	1.65	2.82	1.70	13.40	4.11	20.22	18.47	16.13	1.54	9.28	24.51	18.12	9.66	6.40	12.81	25.24	3.33	21.05	14.62	14.21	2.48	11.04	8.57	0.068481	1.000000
K	intron_retention		chr20	+	chr20:2636393-2636579				chr20:2636392-2636393;chr20:2636579-2636580		0.00	5.88	14.29	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	1.38	1.30	0.00	0.00	3.45	2.56	6.25	17.74	6.67	0.00	0.00	2.56	2.56	5.08	0.00	9.09	7.32	4.76	6.82	8.11	11.76	0.93	0.00	-0.93	0.862541	1.000000
K	intron_retention	FGR	chr1	-	chr1:27941438-27941944				chr1:27941437-27941438;chr1:27941944-27941945		0.00	6.90	3.45	0.00	4.55	NA	0.51	0.00	0.00	0.30	0.76	0.00	0.00	0.00	0.00	0.36	0.83	0.00	0.00	5.71	2.44	4.59	5.41	2.20	NA	1.92	0.00	1.25	1.09	1.59	0.00	0.00	0.00	2.01	2.24	2.29	0.00	0.00	0.00	0.591940	1.000000
K	intron_retention		chr11	-	chr11:60707111-60709506				chr11:60707110-60707111;chr11:60709506-60709507		5.93	3.39	5.19	0.86	1.33	1.04	2.16	2.41	0.97	0.49	0.86	0.00	1.12	2.13	1.92	0.69	0.61	0.00	2.07	3.91	2.49	1.56	2.06	1.40	0.00	3.88	4.00	1.81	2.72	0.75	4.49	1.68	1.24	2.55	3.89	2.70	1.65	3.90	2.24	0.262648	1.000000
K	cassette	PQLC1	chr18	-	chr18:77703463-77710723	chr18:77703463-77709518;chr18:77709656-77710723		chr18:77709519-77709655			0.00	2.27	4.17	0.00	2.44	0.00	2.63	2.44	4.65	4.08	3.23	9.68	2.74	4.35	7.14	2.94	3.57	4.00	0.00	0.00	3.45	0.00	1.85	5.41	0.00	0.00	5.56	3.03	0.00	0.00	0.00	0.00	3.03	2.94	0.00	4.62	2.45	0.00	-2.45	0.511895	0.791208
K	intron_retention		chr8	-	chr8:144658743-144658815				chr8:144658742-144658743;chr8:144658815-144658816		3.45	8.41	5.41	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	6.25	4.26	5.88	5.13	10.00	6.35	3.12	6.00	NA	0.00	0.00	14.63	15.56	12.28	0.00	5.56	0.00	3.87	3.29	-0.58	0.698226	1.000000
K	cassette	CD46	chr1	+	chr1:207959028-207966863	chr1:207959028-207963597;chr1:207963691-207966863		chr1:207963598-207963690			16.39	12.90	22.73	NA	16.67	NA	16.98	20.00	24.09	27.27	23.49	25.00	21.43	25.53	31.17	23.08	34.82	22.97	NA	15.91	22.22	18.75	26.76	25.00	NA	21.28	30.34	16.67	28.57	30.00	26.32	22.97	9.09	35.48	30.00	26.26	14.94	20.64	5.70	0.123069	0.709176
N	cassette	TNFSF12	chr17	+	chr17:7454296-7460094;chr17:7454292-7460094	chr17:7454296-7456903,chr17:7454292-7456903;chr17:7457143-7460094		chr17:7456904-7457142			10.64	3.28	6.25	NA	10.71	NA	12.64	13.89	20.83	13.33	11.63	20.00	13.64	23.26	21.43	12.12	14.56	11.76	8.70	6.25	15.38	0.00	8.57	12.50	15.00	17.65	6.25	16.67	17.91	21.43	7.14	9.52	4.17	9.68	5.88	6.67	10.67	12.27	1.60	0.314600	0.709176
K	intron_retention		chr19	-	chr19:50364768-50364864				chr19:50364767-50364768;chr19:50364864-50364865		5.88	3.66	2.94	3.70	2.63	2.38	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	2.67	0.00	0.00	NA	4.00	NA	5.38	0.00	0.00	NA	5.56	NA	10.71	3.45	5.56	0.00	6.25	0.00	3.17	0.00	-3.17	0.946374	1.000000
N	jcn_only_AA	LMF2	chr22	-	chr22:50942864-50942987	chr22:50942881-50942987		chr22:50942864-50942880	chr22:50942863-50942864		100.00	100.00	100.00	100.00	93.94	100.00	100.00	100.00	100.00	94.59	100.00	100.00	94.59	100.00	93.85	100.00	96.92	96.67	100.00	94.29	100.00	92.86	100.00	100.00	100.00	95.83	100.00	100.00	100.00	90.62	95.56	100.00	100.00	100.00	100.00	100.00	100.00	97.91	-2.09	0.318930	0.663989
K	intron_retention	GLA	chrX	-	chrX:100653556-100653772				chrX:100653555-100653556;chrX:100653772-100653773		16.53	14.62	21.03	17.53	11.90	10.48	0.00	3.73	1.39	1.69	1.73	1.60	2.48	2.99	3.70	3.00	3.25	2.56	8.93	13.54	7.67	14.23	14.22	10.47	7.79	18.39	15.11	9.35	10.76	12.38	17.93	16.19	10.83	18.02	20.27	15.80	8.36	15.04	6.68	0.433136	1.000000
K	intron_retention		chr3	+	chr3:52536108-52536174				chr3:52536107-52536108;chr3:52536174-52536175		16.98	20.32	8.33	NA	9.09	4.76	0.66	0.00	0.00	0.00	0.85	0.00	0.90	0.00	0.00	0.23	0.43	0.00	13.58	15.38	NA	4.11	9.55	3.69	11.21	1.82	10.00	0.85	6.33	1.00	NA	0.00	10.94	3.52	5.19	1.67	11.07	1.82	-9.25	0.834702	1.000000
K	cassette	PRMT2	chr21	+	chr21:48069652-48084206	chr21:48069652-48083294;chr21:48083467-48084206		chr21:48083295-48083466			88.89	100.00	86.36	NA	84.62	NA	92.00	86.67	100.00	70.00	100.00	NA	90.91	88.89	82.35	78.57	NA	NA	88.24	86.67	87.50	NA	87.50	81.25	100.00	87.50	89.47	NA	90.00	85.71	100.00	100.00	100.00	90.91	100.00	87.50	96.00	88.19	-7.81	0.104678	0.688030
N	jcn_only_AD	CDYL	chr6	+	chr6:4952644-4954131;chr6:4952877-4954131	chr6:4952608-4954131		chr6:4952608-4952643;chr6:4952644-4952876	chr6:4952607-4952608;chr6:4952643-4952644		0.00	0.00	3.57	3.51	0.00	3.36	0.00	0.00	0.00	0.00	0.00	2.78	0.00	3.85	0.00	0.00	0.00	3.33	0.00	0.00	2.56	0.00	0.00	6.67	0.00	5.41	0.00	0.00	0.00	1.20	0.00	0.00	7.69	0.00	3.57	0.00	0.00	0.00	0.00	0.875363	0.937431
K	cassette	CHMP1A	chr16	-	chr16:89718055-89723989	chr16:89718055-89720311;chr16:89720332-89723989		chr16:89720312-89720331			91.46	82.98	92.31	NA	100.00	NA	92.86	87.26	88.97	94.44	91.36	95.31	88.50	85.71	80.87	90.21	87.50	84.13	70.00	88.16	84.00	90.24	96.77	93.44	100.00	90.32	92.50	96.00	94.74	82.05	83.05	93.94	NA	88.31	92.00	85.26	88.50	87.71	-0.79	0.885669	0.965993
K	coord_cassette	HMGCL	chr1	-	chr1:24134814-24143164	chr1:24134814-24137225;chr1:24137290-24140679;chr1:24140829-24143164		chr1:24137226-24137289;chr1:24140680-24140828			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	97.37	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.55	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.239862	0.643829
N	alternative_acceptor	METTL9	chr16	+	chr16:21636437-21638265;chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666550	chr16:21636437-21666547		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		36.57	44.62	36.22	30.00	38.30	23.08	39.44	43.48	40.54	26.83	29.55	37.93	39.62	41.67	50.00	35.71	32.00	33.33	31.58	32.65	39.02	26.47	21.82	20.83	50.00	47.06	30.99	37.04	38.30	37.04	40.48	31.51	26.67	31.91	31.82	38.00	39.53	41.08	1.55	0.691110	0.883019
N	cassette	GMPPA	chr2	+	chr2:220370278-220370701	chr2:220370278-220370416;chr2:220370484-220370701		chr2:220370417-220370483			100.00	100.00	100.00	92.86	87.50	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	89.74	100.00	100.00	100.00	83.33	100.00	72.92	100.00	100.00	NA	100.00	100.00	100.00	90.00	90.70	100.00	86.67	100.00	95.35	100.00	4.65	0.132588	0.709176
N	cassette	PPM1G	chr2	-	chr2:27606960-27607841	chr2:27606960-27607539;chr2:27607635-27607841		chr2:27607540-27607634			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention		chr11	+	chr11:47283001-47283097				chr11:47283000-47283001;chr11:47283097-47283098		6.74	10.96	7.41	7.50	11.45	3.12	2.40	2.10	2.36	1.55	1.28	0.00	0.00	2.44	2.50	1.94	3.53	0.00	5.36	4.51	3.46	6.73	12.55	4.76	16.36	4.77	8.47	2.34	6.79	3.17	5.58	9.80	6.36	6.62	7.98	6.21	5.86	4.64	-1.22	0.573198	1.000000
N	alternative_first_exon		chr3	-	chr3:10059756-10061427;chr3:10059756-10067724	chr3:10059756-10065243,chr3:10059756-10065213	chr3:10067725-10068049	chr3:10065244-10065431			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	81.82	100.00	NA	NA	100.00	100.00	0.00	0.391002	0.552368
K	cassette	PDCD6	chr5	+	chr5:311518-314531	chr5:311518-313815;chr5:313966-314531		chr5:313816-313965			0.00	0.00	1.15	3.33	0.00	0.00	0.00	2.50	2.82	0.00	0.00	0.00	1.41	0.00	5.19	0.00	2.15	6.67	0.00	1.67	4.35	2.44	0.87	4.00	0.00	8.16	1.80	1.54	0.00	0.00	7.84	2.53	1.67	3.57	0.00	4.41	0.00	2.08	2.08	0.121432	0.709176
N	alternative_donor	SH3BGRL	chrX	+	chrX:80533911-80552693	chrX:80548842-80552693		chrX:80533911-80548841	chrX:80533910-80533911		0.00	0.58	0.26	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.00	0.00	0.00	1.43	0.00	0.69	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.89	0.00	-0.89	0.171961	0.563271
K	intron_retention		chr1	-	chr1:1571844-1572043				chr1:1571843-1571844;chr1:1572043-1572044		4.11	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.08	3.77	4.11	0.00	1.35	6.90	0.00	2.22	1.49	4.17	1.67	0.00	3.30	2.48	2.74	1.82	1.35	2.90	0.00	2.76	2.76	0.728790	1.000000
K	intron_retention	LRP1	chr12	+	chr12:57573340-57573564				chr12:57573339-57573340;chr12:57573564-57573565		0.00	7.32	6.52	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	NA	NA	5.26	1.67	12.24	0.00	0.00	0.00	0.00	0.00	NA	NA	14.29	0.00	0.00	0.00	3.66	0.00	-3.66	0.634034	1.000000
K	intron_retention	MKNK1	chr1	-	chr1:47025950-47027149				chr1:47025949-47025950;chr1:47027149-47027150		3.23	0.00	6.67	NA	0.00	NA	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.96	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	NA	6.45	1.47	3.85	0.00	0.00	0.00	0.476741	1.000000
N	alternative_acceptor	LY6E	chr8	+	chr8:144102409-144102730;chr8:144102409-144102765;chr8:144102409-144102711	chr8:144102409-144102734		chr8:144102712-144102730;chr8:144102731-144102734;chr8:144102735-144102765	chr8:144102730-144102731;chr8:144102734-144102735;chr8:144102765-144102766		0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.58	0.00	0.00	1.10	0.00	0.38	0.55	2.15	0.00	0.00	NA	0.49	0.00	0.00	0.00	2.13	NA	0.52	0.00	0.00	5.56	1.61	0.39	0.00	0.00	0.00	0.00	0.00	0.00	0.44	0.44	0.001729	0.302671
N	cassette	MS4A7	chr11	+	chr11:60150762-60162418;chr11:60154247-60161259;chr11:60150762-60160157;chr11:60152696-60162418;chr11:60150762-60161259	chr11:60152696-60156862,chr11:60150762-60156862,chr11:60154247-60156862;chr11:60157070-60162418,chr11:60157070-60161259,chr11:60157070-60160157		chr11:60156863-60157069			97.40	100.00	100.00	100.00	100.00	100.00	97.58	97.97	100.00	97.92	98.19	100.00	97.10	97.95	NA	94.59	96.63	94.12	100.00	99.09	100.00	100.00	98.25	98.94	100.00	98.69	100.00	100.00	96.18	97.50	97.56	100.00	100.00	100.00	99.44	100.00	100.00	97.96	-2.04	0.151294	0.709176
N	jcn_only_AA	M6PR	chr12	-	chr12:9094537-9095011;chr12:9093298-9095011;chr12:9093466-9095011	chr12:9093500-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		1.34	0.00	1.53	5.66	3.37	7.69	0.00	0.00	0.00	0.35	0.13	0.49	0.21	0.33	0.84	1.29	0.90	1.15	3.70	1.65	1.44	0.85	1.01	0.72	0.00	0.00	0.70	0.96	0.66	0.71	1.55	0.51	7.35	0.98	0.55	1.04	0.10	0.84	0.73	0.441499	0.706196
N	jcn_only_AA		chr17	+	chr17:43319002-43319340;chr17:43319002-43319320;chr17:43319002-43319228;chr17:43319002-43319293;chr17:43319002-43319231	chr17:43319002-43319213		chr17:43319214-43319228;chr17:43319229-43319231;chr17:43319232-43319293;chr17:43319294-43319320;chr17:43319321-43319340	chr17:43319228-43319229;chr17:43319231-43319232;chr17:43319293-43319294;chr17:43319320-43319321;chr17:43319340-43319341		94.68	93.02	93.25	100.00	95.52	NA	100.00	96.80	98.21	95.83	98.15	100.00	100.00	97.63	99.45	100.00	97.40	100.00	94.74	93.84	100.00	90.91	96.10	96.43	97.14	94.47	97.18	100.00	96.43	96.67	97.37	92.36	100.00	94.67	93.55	94.67	98.57	95.74	-2.83	0.269773	0.663989
N	alternative_donor	USP19	chr3	-	chr3:49147796-49147948;chr3:49147796-49147876	chr3:49147796-49147880		chr3:49147877-49147880;chr3:49147881-49147948	chr3:49147880-49147881;chr3:49147948-49147949		8.70	0.00	7.41	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.00	9.52	0.00	NA	0.00	7.69	0.00	0.00	3.85	18.18	11.76	0.00	8.70	6.67	0.00	0.00	19.05	7.14	0.00	4.35	4.35	0.139201	0.551111
K	alternative_donor	SORBS3	chr8	+	chr8:22422035-22422780	chr8:22422587-22422780		chr8:22422035-22422586	chr8:22422034-22422035		6.67	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	2.08	0.00	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.513757	0.765423
K	intron_retention	CNDP2	chr18	+	chr18:72185876-72186183				chr18:72185875-72185876;chr18:72186183-72186184		1.79	0.00	3.95	4.17	1.79	0.00	0.00	0.51	0.00	0.00	0.00	0.78	0.00	0.59	1.45	0.87	0.70	0.00	0.00	0.82	1.56	1.16	1.64	1.16	23.08	1.26	4.72	3.12	1.42	0.87	3.24	2.68	0.00	3.68	1.42	3.49	0.00	1.04	1.04	0.610240	1.000000
K	intron_retention	DDX41	chr5	-	chr5:176939208-176939322				chr5:176939207-176939208;chr5:176939322-176939323		0.00	0.59	2.67	1.64	0.88	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.31	2.13	2.38	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	5.56	4.37	0.00	1.35	0.00	0.29	0.00	-0.29	0.956719	1.000000
N	jcn_only_AD	CDC26	chr9	-	chr9:116035719-116037661;chr9:116035719-116037509;chr9:116035719-116036839	chr9:116035719-116037657		chr9:116036840-116037509;chr9:116037510-116037657;chr9:116037658-116037661	chr9:116037509-116037510;chr9:116037657-116037658;chr9:116037661-116037662		12.50	0.00	4.76	0.00	0.00	0.00	12.50	7.50	6.45	5.88	11.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	10.53	0.00	11.43	0.00	0.00	0.00	0.00	6.67	0.00	6.31	6.31	0.216382	0.657607
K	jcn_only_AD	PIGH	chr14	-	chr14:68056890-68059351	chr14:68056890-68059031					0.00	0.00	0.00	NA	6.67	NA	7.69	0.00	8.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	5.56	NA	0.00	8.70	NA	NA	0.00	0.00	NA	0.00	NA	0.00	8.82	8.33	0.00	0.00	NA	3.85	0.00	-3.85	0.285103	0.657607
N	intron_retention		chr19	+	chr19:18288575-18288664				chr19:18288574-18288575;chr19:18288664-18288665		84.29	81.70	82.50	88.46	91.95	96.00	100.00	94.12	NA	100.00	95.65	NA	86.67	100.00	100.00	100.00	92.50	NA	86.14	85.14	84.31	87.88	91.95	82.14	100.00	89.74	90.00	100.00	100.00	100.00	87.31	85.99	87.56	82.93	90.16	83.33	87.12	88.53	1.41	0.836965	1.000000
N	cassette	DECR1	chr8	+	chr8:91013790-91031136;chr8:91013790-91031140	chr8:91013790-91029351;chr8:91029555-91031140,chr8:91029555-91031136		chr8:91029352-91029554			94.74	100.00	91.23	NA	91.67	NA	94.12	91.82	89.43	96.43	94.51	94.59	92.68	95.49	87.50	91.49	95.00	96.15	NA	93.51	100.00	95.45	93.88	93.75	NA	89.66	87.04	100.00	93.18	93.48	89.47	85.25	100.00	94.12	93.02	91.89	97.06	92.66	-4.40	0.112913	0.709176
K	alternative_donor	HMGA1	chr6	+	chr6:34208660-34210488	chr6:34208693-34210488		chr6:34208660-34208692	chr6:34208659-34208660		43.48	69.23	50.00	NA	62.50	NA	56.48	60.87	54.55	59.43	58.82	59.77	60.14	58.93	55.00	59.39	61.29	60.98	NA	50.00	58.33	55.66	60.26	58.33	63.64	57.69	52.63	60.87	57.27	70.83	53.85	40.00	NA	53.40	56.72	65.38	61.89	55.77	-6.12	0.064549	0.436357
K	jcn_only_AD	FLOT2	chr17	-	chr17:27209710-27210194	chr17:27209710-27210125		chr17:27210126-27210194	chr17:27210194-27210195		93.94	66.67	98.50	NA	NA	NA	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	98.62	100.00	96.15	100.00	NA	100.00	96.88	NA	100.00	100.00	100.00	95.24	100.00	NA	NA	NA	90.00	93.24	NA	100.00	100.00	97.22	100.00	97.62	-2.38	0.604649	0.805858
N	alternative_acceptor	ARRDC1	chr9	+	chr9:140509453-140509505;chr9:140509453-140509525	chr9:140509453-140509548		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		41.94	25.41	20.00	22.73	18.33	31.82	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	30.43	41.67	13.16	NA	19.44	NA	18.60	28.57	13.64	NA	0.00	13.33	40.91	36.84	27.43	NA	43.75	12.50	22.01	34.74	12.73	0.417491	0.732202
N	jcn_only_AD	CPQ	chr8	+	chr8:97797559-97847200	chr8:97819953-97847200		chr8:97797559-97819952	chr8:97797558-97797559		0.00	0.00	0.00	NA	0.00	NA	0.00	3.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.204966	0.657607
K	intron_retention	ARHGEF1	chr19	+	chr19:42400556-42402590				chr19:42400555-42400556;chr19:42402590-42402591		8.62	15.00	21.43	NA	21.74	NA	6.90	8.57	2.94	NA	0.00	NA	19.35	4.17	18.18	NA	NA	NA	18.18	5.88	8.00	NA	27.78	NA	47.62	23.33	25.00	NA	40.00	NA	12.50	24.53	25.00	28.00	26.32	34.29	18.77	8.59	-10.17	0.531580	1.000000
K	intron_retention	CIB1	chr15	-	chr15:90774255-90774326				chr15:90774254-90774255;chr15:90774326-90774327		4.00	5.21	5.03	3.55	4.29	3.45	0.85	0.00	0.88	0.00	0.00	0.00	1.30	0.00	2.13	1.02	1.52	0.00	3.56	5.93	3.40	3.66	4.93	2.50	4.80	4.72	4.43	0.96	2.87	2.76	7.09	6.58	5.36	2.56	4.93	1.59	4.18	4.36	0.18	0.999889	1.000000
N	jcn_only_AA	LILRA5	chr19	-	chr19:54819028-54822683	chr19:54819034-54822683		chr19:54819028-54819033	chr19:54819027-54819028		100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.85	99.53	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177966	0.663989
N	jcn_only_AD	NDUFS5	chr1	+	chr1:39492701-39494394;chr1:39492071-39494394	chr1:39492075-39494394		chr1:39492071-39492074;chr1:39492075-39492700	chr1:39492070-39492071;chr1:39492074-39492075		44.90	55.84	52.69	50.00	49.77	53.12	24.90	25.00	22.34	23.00	22.85	22.99	52.99	50.00	45.68	56.91	48.11	50.97	46.70	51.85	44.59	55.65	45.79	49.47	40.54	47.06	50.00	50.94	56.02	55.74	61.54	48.53	50.28	50.53	48.57	52.27	48.49	48.53	0.04	0.826814	0.922533
N	cassette	ANKRD13D	chr11	+	chr11:67059652-67067000	chr11:67059652-67066528;chr11:67066596-67067000		chr11:67066529-67066595			93.48	93.07	96.34	NA	91.67	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	97.30	NA	100.00	100.00	100.00	NA	100.00	NA	97.30	100.00	94.74	NA	100.00	NA	100.00	93.10	90.54	100.00	95.24	100.00	98.65	100.00	1.35	0.322520	0.709176
N	alternative_acceptor	OLFML2B	chr1	-	chr1:161962050-161967614;chr1:161954771-161967614;chr1:161966285-161967614;chr1:161948463-161967614	chr1:161962752-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		0.00	0.00	0.62	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	2.22	0.00	0.00	NA	0.00	0.00	5.80	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.78	0.00	0.00	0.00	1.11	0.00	-1.11	0.115504	0.605363
N	jcn_only_AA	MOV10	chr1	+	chr1:113241412-113242129;chr1:113241412-113242079	chr1:113241412-113242306		chr1:113242080-113242129;chr1:113242130-113242306	chr1:113242129-113242130;chr1:113242306-113242307		96.45	100.00	95.65	NA	100.00	94.92	100.00	96.77	96.10	NA	100.00	100.00	100.00	100.00	96.97	88.24	100.00	81.82	100.00	96.81	94.34	NA	100.00	92.86	100.00	93.33	97.73	92.31	100.00	94.59	93.68	94.69	100.00	100.00	95.00	94.12	100.00	96.61	-3.39	0.012116	0.486024
K	jcn_only_AD	CHMP1A	chr16	-	chr16:89713740-89715785	chr16:89713740-89715758		chr16:89715759-89715785	chr16:89715785-89715786		97.33	100.00	100.00	100.00	96.55	NA	97.30	98.98	100.00	100.00	100.00	100.00	100.00	97.50	97.53	97.94	100.00	98.18	100.00	100.00	96.55	100.00	100.00	100.00	100.00	97.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.44	100.00	100.00	98.24	-1.76	0.171873	0.657607
K	intron_retention	DNMT1	chr19	-	chr19:10249282-10250351				chr19:10249281-10249282;chr19:10250351-10250352		2.04	8.33	0.00	NA	3.70	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.12	1.67	NA	NA	4.35	0.00	0.00	1.72	NA	0.00	0.00	0.00	0.00	4.44	0.00	0.00	0.00	0.00	0.670899	1.000000
N	alternative_first_exon	RABGAP1L	chr1	+	chr1:174872106-174926593;chr1:174846744-174926593;chr1:174843645-174926593	chr1:174781099-174926593	chr1:174846530-174846743;chr1:174843596-174843644	chr1:174780970-174781098			9.46	90.91	NA	54.55	80.00	9.30	75.00	3.14	6.85	NA	92.86	14.75	60.00	1.66	5.88	29.41	87.50	9.38	NA	7.14	38.46	NA	83.33	25.81	NA	1.18	NA	15.79	81.82	3.18	2.67	NA	81.82	75.00	70.00	15.28	78.41	2.91	-75.50	0.001114	0.016459
N	jcn_only_AD	AD000671.6,DOHH	chr19	-	chr19:36232130-36233296;chr19:36232130-36233290	chr19:36232130-36233167		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	5.08	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	1.71	2.13	0.00	0.00	0.00	0.00	4.04	0.00	0.00	3.57	1.72	4.44	0.00	0.00	0.00	0.00	0.00	0.907745	0.956036
N	alternative_donor	RPLP2	chr11	+	chr11:810498-811596;chr11:810322-811596;chr11:810358-811596	chr11:810040-811596		chr11:810040-810321;chr11:810322-810357;chr11:810358-810497	chr11:810039-810040;chr11:810321-810322;chr11:810357-810358		8.70	6.54	4.62	4.09	5.14	6.00	1.70	0.00	2.26	1.22	1.61	1.40	0.00	0.00	0.00	1.51	1.48	0.00	4.61	0.00	5.37	3.87	4.69	6.06	7.45	0.00	4.35	0.00	4.28	4.18	10.00	8.20	9.73	5.63	4.91	3.36	5.58	0.00	-5.58	0.464907	0.721956
K	jcn_only_AD	DBNDD2,SYS1-DBNDD2	chr20	+	chr20:44037579-44038571	chr20:44037677-44038571		chr20:44037579-44037676	chr20:44037578-44037579		0.00	7.50	1.40	0.00	3.90	NA	1.72	0.00	2.00	8.00	2.70	9.52	1.92	0.00	4.08	5.00	3.03	0.00	0.00	0.00	3.66	NA	3.92	NA	0.00	0.00	1.27	8.33	1.16	0.00	0.00	0.00	0.00	4.35	5.00	4.17	0.86	0.00	-0.86	0.178302	0.657607
N	intron_retention		chr19	+	chr19:2271954-2272752				chr19:2271953-2271954;chr19:2272752-2272753		100.00	100.00	100.00	NA	84.62	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	83.87	100.00	80.00	NA	78.95	NA	82.76	84.62	100.00	NA	NA	NA	90.48	95.83	87.23	NA	81.82	100.00	85.55	95.24	9.69	0.651843	1.000000
N	alternative_acceptor	NAPA	chr19	-	chr19:47996278-47996375	chr19:47996303-47996375		chr19:47996278-47996302	chr19:47996277-47996278		91.16	100.00	91.11	96.55	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	85.71	94.12	96.30	95.65	90.60	NA	91.36	100.00	100.00	100.00	98.56	78.12	87.67	86.67	90.57	93.06	94.27	100.00	91.26	-8.74	0.440511	0.750708
K	cassette	ACIN1	chr14	-	chr14:23535218-23538684	chr14:23535218-23536522;chr14:23537881-23538684		chr14:23536523-23537880			51.76	50.00	65.41	NA	30.77	NA	17.54	37.29	30.91	15.00	16.22	16.67	25.37	39.66	47.54	25.00	17.28	14.81	NA	53.16	17.65	55.56	60.81	75.51	50.00	59.74	48.45	39.39	36.00	27.27	39.39	51.06	36.36	64.63	60.75	72.22	36.36	45.71	9.35	0.190560	0.709176
N	jcn_only_AA	IL18	chr11	-	chr11:112033770-112034628;chr11:112019460-112034628;chr11:112025806-112034628;chr11:112030095-112034628	chr11:112025785-112034628					100.00	100.00	94.69	100.00	96.43	NA	97.60	93.33	93.22	98.86	98.44	95.35	96.99	95.42	89.74	96.62	98.46	96.51	87.50	96.55	97.53	100.00	95.92	100.00	NA	95.31	96.33	100.00	96.43	100.00	90.91	97.01	85.00	95.92	91.40	94.87	96.99	95.37	-1.62	0.594496	0.812401
K	intron_retention		chr3	+	chr3:37089175-37090007				chr3:37089174-37089175;chr3:37090007-37090008		0.00	0.00	0.00	0.00	0.00	NA	0.00	5.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	NA	3.23	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.00	0.00	3.33	0.00	0.00	0.00	0.799683	1.000000
K	cassette	PSMB3	chr17	+	chr17:36912244-36918663	chr17:36912244-36916760;chr17:36916862-36918663		chr17:36916761-36916861			97.41	96.99	97.12	95.52	96.21	95.16	95.29	96.30	96.67	90.91	92.23	90.80	96.59	96.83	95.59	92.17	94.12	94.81	96.00	96.70	97.04	93.59	95.31	97.37	96.81	97.56	98.04	97.53	96.09	96.36	94.29	93.86	96.76	93.68	95.15	95.80	96.68	96.77	0.09	0.849121	0.949480
K	cassette	MAGOH	chr1	-	chr1:53694627-53701248	chr1:53694627-53699213;chr1:53699325-53701248		chr1:53699214-53699324			59.65	68.97	68.09	71.83	71.74	70.51	62.75	68.75	80.00	75.38	84.21	80.36	81.03	70.00	81.03	82.68	82.54	77.97	71.43	75.00	69.39	75.64	78.07	77.50	69.70	79.41	75.68	71.83	78.35	76.64	63.01	58.18	59.30	73.17	70.67	72.12	69.34	69.38	0.04	0.920354	0.979285
N	alternative_acceptor	HDAC5	chr17	-	chr17:42160015-42160132	chr17:42160041-42160132		chr17:42160015-42160040	chr17:42160014-42160015		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	100.00	NA	100.00	NA	91.89	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.193452	0.660713
N	cassette	FBXW4	chr10	-	chr10:103384568-103432671	chr10:103384568-103427642;chr10:103427738-103432671		chr10:103427643-103427737			100.00	100.00	88.89	NA	94.44	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	85.71	NA	100.00	NA	NA	87.50	100.00	NA	100.00	NA	100.00	90.48	100.00	NA	100.00	86.67	100.00	83.33	NA	85.71	100.00	100.00	100.00	100.00	0.00	0.179540	0.709176
N	jcn_only_AA	GPS1	chr17	+	chr17:80012852-80013040;chr17:80012852-80012967	chr17:80012852-80013037		chr17:80012968-80013037;chr17:80013038-80013040	chr17:80013037-80013038;chr17:80013040-80013041		81.48	73.33	80.49	NA	86.67	NA	83.33	94.74	78.26	88.24	89.83	75.00	81.40	94.74	82.00	87.76	81.97	89.47	86.36	76.19	85.19	85.71	85.37	83.33	90.32	88.24	83.33	88.89	82.22	89.47	80.00	87.10	76.47	87.10	75.61	81.58	82.37	84.86	2.49	0.350933	0.663989
K	jcn_only_AD	COPZ1	chr12	+	chr12:54741824-54744259	chr12:54743443-54744259					92.31	92.86	96.08	100.00	98.44	96.55	94.50	92.00	91.49	69.77	82.61	71.43	92.37	94.59	95.35	96.51	75.38	78.79	89.74	91.53	92.68	94.74	94.67	97.78	94.12	96.55	94.44	95.83	93.75	90.57	97.30	92.86	96.30	96.36	97.47	97.01	93.49	93.45	-0.04	0.602607	0.805491
N	jcn_only_AA	TBC1D2	chr9	-	chr9:100961867-100962534;chr9:100961871-100962534	chr9:100961819-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		0.00	0.00	0.00	0.00	1.41	8.33	0.00	0.00	0.00	4.35	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.82	1.20	0.00	0.00	0.00	0.00	0.00	2.11	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660770;chr9:35660645-35660767	chr9:35660645-35660742		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		82.05	73.87	76.00	90.00	89.74	100.00	91.30	89.47	100.00	90.00	85.19	NA	96.00	90.00	93.75	88.24	90.32	NA	78.57	80.00	75.00	65.00	91.07	NA	77.32	70.83	85.29	93.75	85.37	92.86	71.79	86.11	76.12	90.00	90.62	82.35	77.94	81.03	3.08	0.770735	0.914744
K	intron_retention	PISD	chr22	-	chr22:32016700-32016981				chr22:32016699-32016700;chr22:32016981-32016982		14.29	0.00	6.67	0.00	0.00	NA	2.63	0.00	0.00	0.00	0.00	NA	1.52	0.00	5.00	0.00	2.33	0.00	NA	4.00	0.00	9.09	10.71	5.88	0.00	4.00	5.88	0.00	7.69	10.00	5.00	8.70	NA	0.00	11.54	6.67	0.76	4.00	3.24	0.611219	1.000000
N	alternative_donor	DPP7	chr9	-	chr9:140006683-140007257;chr9:140006683-140007171;chr9:140006683-140007196	chr9:140006683-140007200		chr9:140007172-140007196;chr9:140007197-140007200;chr9:140007201-140007257	chr9:140007196-140007197;chr9:140007200-140007201;chr9:140007257-140007258		3.12	1.25	2.56	2.86	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	2.15	1.96	0.82	2.17	0.00	0.00	0.00	0.00	0.85	0.00	2.13	7.89	2.29	4.84	0.00	1.10	0.62	0.00	-0.62	0.820416	0.942369
K	cassette	NUBP1	chr16	+	chr16:10841134-10849577	chr16:10841134-10846466;chr16:10846536-10849577		chr16:10846467-10846535			78.95	68.42	81.48	83.33	93.55	NA	100.00	100.00	93.55	100.00	96.30	100.00	95.12	100.00	92.59	96.77	97.87	100.00	90.91	94.12	100.00	100.00	92.16	100.00	NA	92.31	85.71	100.00	95.45	100.00	84.62	89.47	100.00	90.91	93.75	93.75	95.12	93.22	-1.91	0.912542	0.975598
K	intron_retention		chr17	+	chr17:7490096-7490216				chr17:7490095-7490096;chr17:7490216-7490217		9.26	9.23	9.76	3.03	10.34	4.76	0.81	0.00	2.61	0.00	1.20	0.00	0.83	0.00	3.85	1.55	0.00	0.00	6.90	8.62	7.46	3.85	9.72	7.25	14.29	12.07	8.45	4.44	6.56	4.55	9.09	14.04	8.33	7.59	8.00	7.23	7.62	8.86	1.24	0.925951	1.000000
K	intron_retention	THAP3	chr1	+	chr1:6692556-6692855				chr1:6692555-6692556;chr1:6692855-6692856		17.86	35.29	22.22	9.09	8.00	7.69	NA	4.35	0.00	0.00	0.00	0.00	0.00	5.00	3.12	4.76	6.25	2.50	9.09	10.00	5.88	9.09	16.67	5.56	35.29	23.53	16.67	0.00	15.38	8.89	20.00	9.68	11.76	NA	7.69	11.11	11.76	13.93	2.17	0.923570	1.000000
K	intron_retention	KIAA0100	chr17	-	chr17:26961105-26961534				chr17:26961104-26961105;chr17:26961534-26961535		6.67	33.33	15.91	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.09	NA	NA	12.50	0.00	14.29	8.33	14.29	NA	0.00	NA	NA	0.00	NA	7.69	14.71	0.00	7.14	6.67	-0.47	0.835048	1.000000
N	jcn_only_AA	SNX8	chr7	-	chr7:2296656-2296999	chr7:2296659-2296999		chr7:2296656-2296658	chr7:2296655-2296656		97.10	100.00	100.00	95.78	94.87	95.74	98.00	98.08	100.00	98.80	96.91	100.00	97.83	95.65	100.00	97.18	96.65	94.12	97.22	96.25	98.46	96.18	98.15	95.77	100.00	100.00	100.00	96.75	95.71	95.00	100.00	93.94	96.53	97.38	95.77	94.96	97.91	97.59	-0.32	0.674013	0.854354
N	alternative_acceptor	DENND3,RIPK2	chr8	+	chr8:142195378-142199084	chr8:142195378-142198546		chr8:142198547-142199084	chr8:142199084-142199085		4.17	6.90	10.00	5.88	0.00	3.17	0.00	3.23	0.00	0.00	NA	0.00	5.88	4.55	5.88	0.00	NA	0.00	4.55	2.78	1.89	NA	6.67	8.33	NA	4.44	5.00	9.09	8.33	8.22	13.64	9.09	4.55	8.33	4.17	13.16	4.55	4.30	-0.25	0.605227	0.848883
N	jcn_only_AA	PTOV1	chr19	+	chr19:50363594-50363889;chr19:50363594-50363822	chr19:50363594-50363870		chr19:50363823-50363870;chr19:50363871-50363889	chr19:50363870-50363871;chr19:50363889-50363890		91.49	94.32	100.00	87.14	89.44	88.79	83.33	90.00	83.33	93.33	88.89	69.23	85.71	92.86	86.96	75.00	83.33	92.31	94.00	91.43	93.55	84.21	91.07	84.62	95.62	100.00	92.73	77.78	88.37	82.50	100.00	97.67	93.12	88.00	90.32	92.86	93.56	92.17	-1.39	0.268229	0.663989
K	intron_retention		chr11	-	chr11:62373246-62373326				chr11:62373245-62373246;chr11:62373326-62373327		4.00	3.12	6.82	0.00	3.12	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	NA	4.55	0.00	4.35	0.00	12.90	8.33	0.00	4.55	9.68	0.00	6.06	0.00	6.67	9.09	0.00	18.18	0.00	3.57	1.56	2.00	0.44	0.859620	1.000000
N	alternative_acceptor	CDK5RAP3	chr17	+	chr17:46055277-46056194;chr17:46055277-46055869	chr17:46055277-46056200		chr17:46055870-46056194;chr17:46056195-46056200	chr17:46056194-46056195;chr17:46056200-46056201		0.00	0.00	0.00	0.00	1.32	0.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.71	0.00	0.00	5.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.714207	0.891525
N	cassette	MGAT1	chr5	-	chr5:180220098-180230601;chr5:180220098-180229679;chr5:180220098-180242424;chr5:180220098-180242413;chr5:180220098-180235501;chr5:180220098-180235647	chr5:180220098-180222837;chr5:180222876-180230601,chr5:180222876-180235501,chr5:180222876-180235647,chr5:180222876-180242413,chr5:180222876-180242424,chr5:180222876-180229679		chr5:180222838-180222875			2.89	0.00	0.57	28.57	14.29	70.37	0.49	1.81	2.18	7.37	3.53	10.50	1.30	1.25	0.49	6.44	4.93	9.94	27.27	2.03	12.50	5.88	3.81	8.58	6.35	2.69	1.79	8.07	4.95	11.90	5.94	5.56	12.90	3.68	2.16	6.98	3.82	2.36	-1.46	0.279909	0.709176
K	intron_retention	SKIV2L	chr6	+	chr6:31936867-31937056				chr6:31936866-31936867;chr6:31937056-31937057		22.00	20.56	29.69	27.27	21.54	31.75	4.17	6.67	8.33	NA	0.00	NA	0.00	NA	17.65	NA	4.00	NA	18.75	24.14	17.65	42.86	25.00	47.37	23.91	25.00	34.69	18.75	21.74	27.59	25.81	23.26	14.02	29.41	32.00	45.71	16.38	24.14	7.76	0.549010	1.000000
N	intron_retention		chr2	+	chr2:219252679-219253371				chr2:219252678-219252679;chr2:219253371-219253372		77.27	100.00	96.30	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	61.54	73.68	NA	62.50	82.61	NA	54.55	100.00	70.59	NA	100.00	NA	48.00	88.89	100.00	82.61	79.49	NA	100.00	100.00	55.56	77.78	100.00	NA	55.56	94.44	38.88	0.112833	1.000000
K	intron_retention	ODF3B	chr22	-	chr22:50969488-50969619				chr22:50969487-50969488;chr22:50969619-50969620		6.19	0.00	5.33	15.00	6.25	15.62	0.00	3.77	9.09	NA	0.00	NA	0.00	5.88	5.97	8.33	5.26	14.29	5.77	4.76	3.85	7.69	3.03	16.67	5.71	6.14	3.42	10.34	2.94	14.29	7.35	3.48	7.14	12.50	11.54	10.53	2.85	6.01	3.15	0.625818	1.000000
N	jcn_only_AA	CDK11A,RP1-283E3.8	chr1	-	chr1:1571844-1635262	chr1:1635064-1635262					100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	91.67	94.00	100.00	87.50	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.825474	0.929528
K	intron_retention		chr7	-	chr7:75617467-75617569				chr7:75617466-75617467;chr7:75617569-75617570		9.62	22.22	11.59	NA	19.23	11.76	0.00	0.00	9.00	0.00	3.85	0.00	4.00	9.09	5.97	11.11	10.00	0.00	NA	15.00	15.38	10.00	14.29	0.00	10.00	20.59	13.73	25.00	23.81	12.00	12.00	8.70	5.26	10.00	10.00	16.67	5.26	10.81	5.55	0.967748	1.000000
K	alternative_acceptor	SRRT	chr7	+	chr7:100482662-100482836	chr7:100482662-100482833		chr7:100482834-100482836	chr7:100482836-100482837		50.00	45.45	48.48	30.00	45.83	NA	48.00	44.44	36.67	38.46	38.10	50.00	42.11	30.77	33.33	36.11	37.21	30.77	46.15	48.15	45.00	44.00	42.22	45.83	60.00	55.00	44.00	39.13	41.94	42.11	44.12	49.15	60.00	40.00	51.72	55.88	47.08	46.30	-0.78	0.315993	0.709013
N	alternative_donor	RNF31,RP11-468E2.4	chr14	+	chr14:24621202-24624365	chr14:24624242-24624365		chr14:24621202-24624241	chr14:24621201-24621202		2.78	2.22	5.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	4.00	4.00	0.00	0.00	NA	1.67	0.00	7.69	3.23	6.25	0.00	1.92	2.17	3.12	0.00	2.04	1.67	2.78	0.00	5.00	4.35	4.55	0.00	1.67	1.67	0.959191	0.985822
N	jcn_only_AD	IGSF6	chr16	-	chr16:21655718-21658460;chr16:21655718-21658453	chr16:21655718-21658627		chr16:21658454-21658460;chr16:21658461-21658627	chr16:21658460-21658461;chr16:21658627-21658628		5.08	0.00	1.06	8.70	4.00	0.00	2.64	2.01	3.17	4.82	1.70	3.78	2.22	1.86	0.00	2.19	2.59	3.01	0.00	4.88	4.84	2.94	4.21	3.51	0.00	4.26	0.00	2.82	3.00	1.85	5.71	1.92	0.00	3.33	2.27	4.55	0.00	4.57	4.57	0.004333	0.177805
K	intron_retention	TMEM179B	chr11	+	chr11:62557152-62557357				chr11:62557151-62557152;chr11:62557357-62557358		2.52	4.44	4.96	4.92	4.38	4.23	2.04	0.00	0.82	0.00	2.13	0.00	3.41	0.00	0.68	0.00	0.00	1.82	4.67	1.47	4.31	6.45	6.19	9.09	3.80	1.33	4.63	2.86	2.20	6.06	2.56	4.38	2.10	7.35	4.00	7.77	3.60	1.40	-2.21	0.388049	1.000000
N	cassette	SIGLEC7	chr19	+	chr19:51649379-51650477	chr19:51649379-51650010;chr19:51650108-51650477		chr19:51650011-51650107			80.77	63.16	61.76	NA	48.28	NA	85.71	85.71	83.33	76.00	82.50	80.95	75.86	90.00	NA	85.71	61.54	58.33	58.97	58.62	71.43	76.92	57.14	78.57	NA	70.00	63.41	75.00	59.26	78.57	NA	66.67	65.22	71.43	62.50	73.33	65.22	80.77	15.55	0.362163	0.709176
N	jcn_only_AA	EIF4A1	chr17	+	chr17:7478577-7479628;chr17:7478577-7479847	chr17:7478577-7479841		chr17:7479629-7479841;chr17:7479842-7479847	chr17:7479841-7479842;chr17:7479847-7479848		92.49	90.96	92.64	95.41	96.21	94.27	91.70	91.34	93.89	93.55	93.30	92.35	91.97	91.31	91.58	94.18	91.93	93.66	95.00	93.56	93.29	96.77	95.79	95.40	97.44	91.61	92.07	96.47	95.50	95.09	94.38	93.19	93.07	96.09	95.83	96.47	92.52	92.05	-0.47	0.444661	0.708659
N	cassette	PDLIM7	chr5	-	chr5:176918148-176919405;chr5:176918148-176918807	chr5:176918148-176918404;chr5:176918422-176919405,chr5:176918422-176918807		chr5:176918405-176918421			3.92	15.38	5.10	NA	4.55	0.00	0.00	3.03	5.26	0.00	5.77	0.00	0.00	2.50	0.00	0.00	0.00	6.67	5.00	5.13	3.57	0.00	7.04	0.00	21.43	6.67	4.00	8.33	11.63	NA	7.61	4.60	5.00	9.09	5.71	0.00	5.00	4.53	-0.47	0.447098	0.750082
K	cassette	ZNF267	chr16	+	chr16:31896578-31925796	chr16:31896578-31901527;chr16:31901572-31925796		chr16:31901528-31901571			0.00	0.00	0.00	1.15	2.68	2.00	0.00	1.00	0.00	2.96	0.00	1.86	0.00	2.67	1.69	2.72	0.00	2.54	1.41	1.55	2.53	0.94	1.05	1.99	7.69	0.96	0.00	1.82	0.00	2.40	0.00	0.00	2.38	1.28	7.04	1.56	0.70	0.98	0.28	0.518527	0.795429
N	alternative_donor	ADRM1	chr20	+	chr20:60878102-60878623	chr20:60878106-60878623		chr20:60878102-60878105	chr20:60878101-60878102		77.08	67.50	84.31	84.00	81.48	100.00	84.09	84.21	86.00	84.44	82.61	100.00	78.26	82.35	82.46	79.39	75.95	74.51	100.00	100.00	85.00	100.00	77.61	78.43	NA	86.27	86.67	81.58	90.24	88.89	79.25	77.78	70.83	79.17	80.49	73.97	78.26	83.28	5.02	0.500992	0.753754
N	jcn_only_AD	SLAMF8	chr1	+	chr1:159802968-159803051	chr1:159802972-159803051		chr1:159802968-159802971	chr1:159802967-159802968		100.00	100.00	96.51	NA	100.00	NA	100.00	98.86	100.00	100.00	98.72	96.43	98.83	99.03	98.11	100.00	98.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	97.87	100.00	100.00	NA	100.00	100.00	94.87	100.00	96.43	100.00	99.41	100.00	0.59	0.263481	0.657607
K	alternative_first_exon	TAGLN2	chr1	-	chr1:159890328-159892981,chr1:159890328-159894246,chr1:159890328-159894272,chr1:159890328-159894276,chr1:159890328-159895127;chr1:159890328-159893225;chr1:159890328-159895239	chr1:159890328-159894283	chr1:159893226-159893507;chr1:159895240-159895522	chr1:159894284-159894341			1.92	0.00	0.88	NA	0.00	NA	0.00	1.45	0.93	0.00	0.00	0.96	0.00	3.08	0.82	0.61	0.00	0.00	0.00	6.90	2.86	0.00	0.00	0.00	0.00	1.45	1.12	0.00	0.00	0.00	4.00	1.61	0.00	0.00	0.00	1.67	0.00	2.50	2.50	0.014714	0.072753
K	alternative_donor	CHD4	chr12	-	chr12:6688084-6690209	chr12:6688084-6690203		chr12:6690204-6690209	chr12:6690209-6690210		1.27	2.20	3.12	6.25	2.13	0.00	1.03	2.38	3.12	3.96	2.54	3.90	1.12	3.51	2.38	2.56	0.66	2.78	2.78	4.84	3.28	4.35	3.53	3.70	0.00	5.19	3.97	3.03	3.49	2.56	5.56	4.71	6.90	4.92	2.04	3.00	1.66	4.17	2.51	0.262383	0.636607
N	alternative_acceptor	CMTM3	chr16	+	chr16:66643907-66646511	chr16:66643907-66644850		chr16:66644851-66646511	chr16:66646511-66646512		1.82	1.59	3.39	0.00	1.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	1.16	0.00	0.00	5.88	0.00	0.00	1.72	0.00	0.00	1.45	2.17	0.00	0.88	0.00	0.00	3.12	0.00	1.92	1.01	0.00	0.00	0.72	0.72	0.278860	0.709013
K	intron_retention	SELO	chr22	+	chr22:50647146-50648609				chr22:50647145-50647146;chr22:50648609-50648610		13.33	10.26	12.50	0.00	11.54	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	2.99	0.00	10.53	4.55	NA	12.00	25.00	11.54	15.79	12.50	16.67	8.11	2.70	14.29	16.00	8.33	20.83	16.22	19.44	17.39	20.00	13.33	24.49	9.18	8.16	-1.02	0.897351	1.000000
N	jcn_only_AA	SVBP	chr1	-	chr1:43279572-43282101;chr1:43273172-43282101	chr1:43279576-43282101		chr1:43273172-43279571;chr1:43279572-43279575	chr1:43273171-43273172;chr1:43279571-43279572		0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	3.57	3.12	0.00	5.26	2.44	0.00	2.94	2.94	8.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	3.45	5.56	0.00	0.00	0.00	0.928608	0.977297
N	alternative_donor	NFYC	chr1	+	chr1:41235088-41236380	chr1:41236288-41236380		chr1:41235088-41236287	chr1:41235087-41235088		6.25	4.00	9.76	4.55	3.64	5.88	2.38	5.26	3.33	4.17	6.06	7.14	3.64	8.33	4.76	6.00	3.80	4.17	0.00	9.68	2.86	11.11	7.04	12.00	6.67	6.25	6.25	7.41	5.80	5.71	5.13	6.82	2.63	8.16	7.41	8.93	3.13	6.25	3.12	0.011817	0.225202
K	alternative_donor	CPSF3	chr2	+	chr2:9607906-9611471	chr2:9608105-9611471		chr2:9607906-9608104	chr2:9607905-9607906		1.82	0.00	1.75	2.17	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	2.38	0.00	0.00	0.00	5.26	1.35	3.33	0.00	0.00	1.56	0.00	0.00	0.00	1.12	0.00	0.00	2.50	0.45	0.91	0.46	0.321288	0.650093
K	alternative_first_exon	NCBP2	chr3	-	chr3:196666304-196669240;chr3:196666304-196669296,chr3:196666304-196668805	chr3:196666304-196668579	chr3:196669297-196669311	chr3:196668580-196668777			7.69	0.00	3.57	NA	0.00	NA	2.38	0.00	2.33	1.59	1.72	4.17	0.00	11.76	4.55	1.61	2.94	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	3.23	6.67	7.69	5.88	0.00	5.00	0.00	0.00	0.00	7.69	7.69	0.042293	0.154688
K	intron_retention		chr20	-	chr20:17594866-17595384				chr20:17594865-17594866;chr20:17595384-17595385		51.85	26.09	NA	NA	NA	68.42	NA	50.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38.46	29.41	57.14	NA	50.00	NA	26.32	47.37	NA	NA	NA	63.16	35.71	50.00	47.62	NA	NA	36.36	32.39	47.37	14.98	0.762427	1.000000
N	alternative_acceptor	TNFRSF10B	chr8	-	chr8:22880498-22881700;chr8:22881447-22881700	chr8:22880468-22881700		chr8:22880468-22880497;chr8:22880498-22881446	chr8:22880467-22880468;chr8:22880497-22880498		NA	0.00	0.00	NA	NA	0.00	9.09	0.00	1.85	7.14	0.00	0.00	5.41	0.00	0.00	8.16	2.86	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.71	0.00	-2.71	0.201547	0.668038
K	intron_retention		chr17	-	chr17:76988223-76988491				chr17:76988222-76988223;chr17:76988491-76988492		94.20	82.05	88.78	90.20	86.21	92.98	89.19	91.30	91.80	92.19	90.70	88.64	90.57	97.87	88.89	91.84	100.00	94.12	89.58	91.84	87.50	92.68	90.70	97.14	100.00	87.34	87.91	94.74	90.24	85.71	90.00	93.15	91.67	91.30	92.16	92.42	90.07	91.57	1.50	0.837848	1.000000
K	cassette	PAPOLA	chr14	+	chr14:96987410-96993766	chr14:96987410-96991646;chr14:96991729-96993766		chr14:96991647-96991728			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	98.36	98.39	100.00	100.00	100.00	100.00	98.61	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.00	100.00	100.00	100.00	100.00	96.43	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_donor	VPS16	chr20	+	chr20:2845964-2846044	chr20:2845968-2846044		chr20:2845964-2845967	chr20:2845963-2845964		2.13	0.00	1.79	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	1.41	4.55	2.56	0.00	0.00	0.00	1.32	0.00	2.04	0.00	2.08	0.00	0.00	0.00	2.13	7.14	0.00	1.04	1.04	0.080441	0.470724
K	jcn_only_AD	PQBP1	chrX	+	chrX:48755377-48755774;chrX:48755298-48755774	chrX:48755366-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		61.11	50.00	77.59	76.32	70.00	63.33	79.25	75.86	80.85	82.35	66.67	72.22	71.43	80.49	86.44	70.45	76.19	75.00	61.90	81.08	76.79	73.81	70.59	66.67	55.17	70.83	75.00	72.22	70.15	76.09	72.34	80.00	67.39	68.89	65.08	71.70	64.64	74.10	9.45	0.110990	0.646283
K	intron_retention		chr19	-	chr19:54758279-54758597				chr19:54758278-54758279;chr19:54758597-54758598		4.26	4.00	NA	0.00	4.08	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.58	0.00	2.33	5.88	NA	0.00	3.42	0.00	0.00	2.90	6.67	3.28	3.09	1.39	2.50	0.00	0.00	1.64	6.12	1.03	0.00	2.70	2.70	0.801904	1.000000
K	intron_retention		chr17	+	chr17:48735569-48735795				chr17:48735568-48735569;chr17:48735795-48735796		3.70	0.00	13.40	NA	5.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	2.70	0.00	10.53	0.00	0.00	0.00	2.86	0.00	0.00	5.00	9.52	0.00	11.54	NA	0.00	3.45	7.14	11.76	9.09	4.55	1.56	0.00	-1.56	0.891760	1.000000
N	jcn_only_AD	TOX4	chr14	+	chr14:21963421-21964703	chr14:21963552-21964703		chr14:21963421-21963551	chr14:21963420-21963421		86.11	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	97.83	100.00	100.00	0.00	0.238844	0.657607
K	alternative_acceptor	ZFAND2A	chr7	-	chr7:1192768-1195088;chr7:1192861-1195088	chr7:1192878-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		7.32	6.56	2.44	5.00	5.33	4.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.00	4.17	3.57	3.92	2.17	5.71	3.33	8.77	1.89	2.70	2.56	3.33	1.59	4.00	6.56	4.88	1.61	2.56	4.84	4.53	2.73	-1.80	0.506608	0.796773
N	alternative_acceptor	MYO9B	chr19	+	chr19:17322584-17322809;chr19:17322584-17322868;chr19:17322584-17325268	chr19:17322584-17322703		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		95.28	97.38	94.12	94.00	96.30	83.68	91.03	88.89	83.33	85.92	89.19	82.61	87.13	78.05	90.91	88.12	84.87	84.31	88.61	92.77	92.13	91.95	97.02	94.23	96.42	94.78	93.27	94.83	97.63	88.15	95.00	92.79	94.59	92.68	92.17	95.31	92.81	93.78	0.97	0.605878	0.848883
N	coord_cassette	ATP6V1D	chr14	-	chr14:67805480-67815753	chr14:67805480-67812484;chr14:67812589-67814125;chr14:67814171-67815753		chr14:67812485-67812588;chr14:67814126-67814170			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
N	alternative_acceptor	SFT2D2	chr1	+	chr1:168206009-168208368;chr1:168206009-168207167	chr1:168206009-168206451		chr1:168206452-168207167;chr1:168207168-168208368	chr1:168207167-168207168;chr1:168208368-168208369		4.76	2.08	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	3.33	0.00	8.33	5.00	6.82	0.00	1.85	5.00	0.00	0.00	0.90	3.45	4.00	0.00	8.70	5.00	3.03	0.00	2.59	2.59	0.068411	0.584083
K	intron_retention	LILRA5	chr19	-	chr19:54818835-54818982				chr19:54818834-54818835;chr19:54818982-54818983		2.57	2.56	2.99	4.44	6.56	3.94	0.00	1.33	2.78	1.82	0.00	1.05	0.00	1.75	2.86	2.56	0.00	2.15	2.47	2.80	2.70	7.69	4.65	2.04	0.00	2.82	4.07	6.10	7.14	3.83	2.16	4.66	7.45	5.19	5.97	4.15	1.24	2.37	1.13	0.988987	1.000000
K	cassette	NADK	chr1	-	chr1:1688048-1688619	chr1:1688048-1688177;chr1:1688322-1688619		chr1:1688178-1688321			3.70	8.70	5.56	NA	NA	NA	0.88	2.26	2.23	0.00	0.00	1.75	0.00	1.90	2.58	2.13	0.00	0.00	NA	5.04	3.23	6.67	5.26	4.65	0.00	4.95	4.55	5.41	0.00	6.00	5.19	4.21	0.00	2.63	2.86	3.09	0.00	4.33	4.33	0.335741	0.709176
K	intron_retention	HPS1	chr10	-	chr10:100182271-100183359				chr10:100182270-100182271;chr10:100183359-100183360		2.22	4.44	3.45	3.57	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	2.04	1.85	0.00	1.85	2.86	2.08	0.00	2.22	7.69	0.00	0.83	2.22	4.00	5.26	0.00	4.35	4.21	3.77	1.02	2.04	1.02	0.673179	1.000000
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67810965-67811088;chr11:67810965-67811037	chr11:67810965-67811020		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		7.78	5.56	8.33	NA	6.67	NA	1.16	0.96	0.00	1.67	1.08	0.00	1.28	1.67	2.04	0.00	1.32	0.00	NA	9.23	3.85	9.09	8.33	4.76	15.38	5.56	5.36	3.45	3.23	0.00	10.53	9.62	NA	13.89	8.33	6.67	3.42	6.67	3.25	0.977636	0.994346
K	alternative_acceptor	PROSER1	chr13	-	chr13:39585475-39586219	chr13:39585625-39586219		chr13:39585475-39585624	chr13:39585474-39585475		100.00	100.00	100.00	100.00	93.75	95.83	100.00	92.86	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.67	100.00	91.30	100.00	100.00	100.00	100.00	93.94	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.637658	0.862563
N	jcn_only_AA	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837179	chr12:53836518-53837270		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		5.13	0.00	3.00	2.27	1.82	0.00	3.35	7.78	4.20	2.18	2.51	3.15	2.94	5.92	2.39	3.73	1.43	2.83	0.00	1.81	4.84	3.85	2.14	3.48	0.00	3.66	3.30	2.16	2.88	3.19	3.04	2.58	1.56	3.93	1.87	2.36	0.78	4.39	3.61	0.014890	0.535072
K	intron_retention		chr16	+	chr16:697885-698119				chr16:697884-697885;chr16:698119-698120		5.56	6.85	4.55	4.33	5.08	2.85	1.25	0.00	0.00	1.33	3.03	0.00	3.85	NA	6.67	2.44	2.04	0.00	6.92	5.88	4.61	2.82	5.45	6.25	3.72	NA	8.70	2.53	6.25	1.64	13.51	15.79	6.72	2.90	6.93	5.19	5.29	5.72	0.43	0.895181	1.000000
N	alternative_acceptor	BAX	chr19	+	chr19:49464172-49464739;chr19:49464172-49464827	chr19:49464172-49464788		chr19:49464740-49464788;chr19:49464789-49464827	chr19:49464788-49464789;chr19:49464827-49464828		79.00	78.88	78.36	69.75	72.10	67.42	84.93	74.60	80.25	82.86	80.33	82.61	80.73	79.31	70.93	78.57	73.91	76.00	80.33	81.44	76.99	75.64	74.45	78.38	82.98	77.57	81.82	75.00	78.77	79.71	75.35	75.00	76.83	71.43	76.03	74.47	80.53	78.28	-2.25	0.096158	0.598353
K	intron_retention		chr22	-	chr22:50943414-50943485				chr22:50943413-50943414;chr22:50943485-50943486		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	2.17	0.00	9.09	0.00	0.00	0.00	2.38	0.00	5.13	6.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.840582	1.000000
N	jcn_only_AD		chr22	-	chr22:21067086-21067589	chr22:21067086-21067568		chr22:21067569-21067589	chr22:21067589-21067590		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	95.00	100.00	100.00	98.25	NA	100.00	100.00	94.74	100.00	NA	100.00	NA	100.00	96.67	100.00	NA	100.00	100.00	100.00	96.00	100.00	NA	100.00	100.00	95.83	87.10	100.00	100.00	100.00	0.00	0.391002	0.657607
K	alternative_acceptor	PCBP2,RP11-793H13.8	chr12	+	chr12:53854928-53856276	chr12:53854928-53856264		chr12:53856265-53856276	chr12:53856276-53856277		48.87	43.48	53.45	60.53	44.25	53.33	29.77	30.83	30.43	31.60	29.24	30.42	28.84	30.00	30.04	30.72	31.25	30.20	46.67	49.47	41.10	49.19	48.74	50.34	42.86	51.30	52.32	42.86	42.31	51.16	54.17	49.63	39.06	54.76	55.15	50.00	40.96	49.17	8.21	0.318274	0.709013
K	alternative_acceptor	SERBP1	chr1	-	chr1:67889961-67890570	chr1:67890006-67890570		chr1:67889961-67890005	chr1:67889960-67889961		10.61	8.26	10.32	7.69	8.99	3.45	11.57	12.50	12.00	8.89	8.75	9.03	10.11	12.50	12.08	7.91	8.56	7.95	5.08	9.68	10.26	8.97	8.39	9.87	0.00	18.18	13.27	8.73	8.84	8.08	9.52	13.33	6.52	9.23	8.12	7.19	7.39	11.55	4.17	0.035401	0.560254
K	intron_retention	RPL38	chr17	+	chr17:72199850-72200056				chr17:72199849-72199850;chr17:72200056-72200057		0.00	0.52	0.00	2.17	1.67	1.55	1.15	0.00	0.00	0.74	0.00	0.00	1.04	0.00	0.00	1.92	0.00	0.88	1.64	0.00	2.15	1.79	2.50	1.61	1.22	0.00	0.00	1.75	1.43	2.33	12.90	2.38	1.20	0.00	0.00	1.79	1.17	0.00	-1.17	0.907294	1.000000
K	mutually_exclusive	ACTN4	chr19	+	chr19:39200117-39201915,chr19:39202002-39205108	chr19:39200117-39200896,chr19:39200983-39205108	chr19:39201916-39202001	chr19:39200897-39200982			94.12	89.66	95.50	NA	NA	NA	93.59	91.06	96.75	93.10	92.24	87.67	94.07	94.00	94.19	94.81	91.34	87.88	NA	93.33	90.91	95.45	96.23	97.44	89.47	93.42	97.56	90.91	93.10	84.62	92.50	93.75	NA	90.00	91.80	92.06	91.62	93.38	1.75	0.358742	0.510003
K	intron_retention		chr16	+	chr16:31383106-31383698				chr16:31383105-31383106;chr16:31383698-31383699		1.72	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	0.00	2.17	0.00	0.00	1.36	0.00	0.00	2.60	0.00	4.35	7.55	2.05	0.00	0.00	2.44	2.03	2.54	0.00	2.56	1.47	0.00	2.33	3.87	0.71	0.00	1.94	1.94	0.217006	1.000000
N	jcn_only_AA	LY6E	chr8	+	chr8:144102409-144102730;chr8:144102409-144102734;chr8:144102409-144102711	chr8:144102409-144102765		chr8:144102712-144102730;chr8:144102731-144102734;chr8:144102735-144102765	chr8:144102730-144102731;chr8:144102734-144102735;chr8:144102765-144102766		1.56	0.00	1.17	2.22	0.00	5.08	2.44	1.14	1.51	2.40	2.19	2.55	0.00	1.23	1.29	1.65	2.16	2.17	0.00	3.83	4.32	9.09	0.00	2.42	0.00	1.20	0.76	2.38	2.00	2.69	3.27	2.99	5.71	1.43	0.00	1.77	0.00	1.40	1.40	0.545645	0.781296
K	alternative_acceptor	UNC93B1	chr11	-	chr11:67766776-67766988	chr11:67766846-67766988		chr11:67766776-67766845	chr11:67766775-67766776		1.54	0.00	1.75	0.00	2.33	9.09	0.00	1.11	0.26	1.03	0.00	0.40	0.77	0.31	1.33	1.47	0.00	0.42	3.45	1.04	0.00	1.92	1.64	1.88	9.09	1.42	1.09	2.67	1.30	3.67	1.36	0.60	0.00	1.09	1.39	2.25	0.39	1.24	0.85	0.496930	0.791230
N	alternative_acceptor	PRR14	chr16	+	chr16:30666742-30666848;chr16:30666742-30666822	chr16:30666742-30666834		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		7.69	0.00	3.12	NA	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	3.70	4.00	0.00	0.00	0.00	NA	6.67	0.00	4.00	0.00	0.00	0.00	3.23	2.27	0.00	5.00	0.00	0.00	0.00	3.23	3.23	0.656679	0.874938
N	jcn_only_AA		chr16	+	chr16:85942780-85943089;chr16:85942780-85943092	chr16:85942780-85945175		chr16:85943090-85943092;chr16:85943093-85945175	chr16:85943092-85943093;chr16:85945175-85945176		100.00	100.00	100.00	NA	NA	37.50	100.00	97.14	100.00	91.04	98.20	95.84	98.67	100.00	98.60	97.00	97.45	98.63	NA	100.00	NA	96.30	98.28	97.24	53.33	100.00	100.00	85.71	87.50	94.59	100.00	95.92	NA	100.00	94.20	97.65	99.34	100.00	0.66	0.392475	0.664463
N	jcn_only_AD	PIK3C3	chr18	+	chr18:39623782-39629494	chr18:39627610-39629494		chr18:39623782-39627609	chr18:39623781-39623782	chr18:39629495-39629569	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	CAPN1	chr11	+	chr11:64973193-64973933	chr11:64973474-64973933		chr11:64973193-64973473	chr11:64973192-64973193		0.00	0.00	1.82	NA	0.00	NA	0.00	0.85	0.00	0.00	1.47	0.00	0.00	0.76	2.13	0.00	1.18	0.00	0.00	0.00	0.00	4.00	1.30	0.00	5.26	2.25	1.56	0.00	0.00	0.00	0.00	4.48	0.00	0.00	4.84	1.43	0.00	0.38	0.38	0.812932	0.941190
K	jcn_only_AD	TBRG4	chr7	-	chr7:45141670-45141945	chr7:45141670-45141879		chr7:45141880-45141945	chr7:45141945-45141946		NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	C14orf159	chr14	+	chr14:91666250-91671049	chr14:91669408-91671049		chr14:91666250-91669407	chr14:91666249-91666250		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	4.35	0.00	NA	0.00	NA	0.00	3.45	0.00	NA	0.00	NA	0.00	0.00	0.00	8.70	0.00	8.00	0.00	1.73	1.73	0.085844	0.632469
K	intron_retention		chr11	+	chr11:46389630-46391043				chr11:46389629-46389630;chr11:46391043-46391044		3.23	0.00	6.76	NA	0.00	NA	1.23	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	2.86	NA	45.00	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	7.50	4.00	1.23	0.00	-1.23	0.565970	1.000000
N	alternative_donor	C1QC	chr1	+	chr1:22970208-22970503;chr1:22970231-22970503;chr1:22970380-22970503;chr1:22965709-22970503	chr1:22965655-22970503		chr1:22965655-22965708;chr1:22965709-22970207;chr1:22970208-22970230;chr1:22970231-22970379	chr1:22965654-22965655;chr1:22965708-22965709;chr1:22970207-22970208;chr1:22970230-22970231		2.55	0.00	1.53	0.14	0.23	0.06	2.97	2.73	1.09	0.00	0.71	0.84	3.31	1.54	0.85	1.12	1.09	0.00	0.23	2.96	0.00	0.21	1.05	0.53	0.00	5.05	3.76	0.42	0.00	0.64	0.58	0.60	0.21	0.50	1.03	1.00	0.22	2.64	2.42	0.134295	0.549287
N	jcn_only_AA		chr20	+	chr20:60859226-60860542;chr20:60859226-60860591	chr20:60859226-60861638		chr20:60860543-60860591;chr20:60860592-60861638	chr20:60860591-60860592;chr20:60861638-60861639		95.24	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.75	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_donor	MGLL	chr3	-	chr3:127540682-127540828;chr3:127540682-127541926	chr3:127540682-127541151		chr3:127540829-127541151;chr3:127541152-127541926	chr3:127541151-127541152;chr3:127541926-127541927		12.50	18.18	14.81	7.14	4.76	8.33	5.02	7.61	12.50	6.20	4.72	8.79	9.70	11.38	7.87	6.63	5.90	10.29	NA	13.51	0.00	6.25	4.64	8.47	NA	9.88	11.43	5.17	2.86	4.63	4.88	12.50	0.00	6.02	4.69	8.79	7.36	10.63	3.27	0.694426	0.870486
K	intron_retention	SNHG6	chr8	-	chr8:67834628-67834848				chr8:67834627-67834628;chr8:67834848-67834849		16.00	3.45	12.73	5.62	6.25	1.56	1.33	0.00	0.00	1.72	0.00	0.00	1.28	0.00	2.56	3.09	1.67	0.00	2.59	17.39	4.27	16.07	12.62	11.76	1.08	11.11	10.53	6.94	8.04	5.88	16.13	13.33	2.10	13.24	11.59	6.32	1.72	13.55	11.84	0.124996	1.000000
K	intron_retention	STIP1	chr11	+	chr11:63971095-63971525				chr11:63971094-63971095;chr11:63971525-63971526		7.14	2.49	6.19	4.55	2.46	3.28	1.27	0.00	1.72	3.05	1.63	6.25	1.94	1.67	3.28	5.30	5.00	4.17	2.14	4.11	3.61	6.60	5.70	4.55	1.43	11.11	3.33	3.26	5.83	3.57	8.93	10.84	4.00	3.26	5.97	5.17	2.04	5.62	3.58	0.528331	1.000000
N	cassette	MYO1F	chr19	-	chr19:8610621-8613120;chr19:8609349-8613120	chr19:8610621-8612919,chr19:8609349-8612919;chr19:8613007-8613120		chr19:8612920-8613006			100.00	95.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	0.00	0.199505	0.709176
K	intron_retention	OLFML2B	chr1	-	chr1:161953126-161953385				chr1:161953125-161953126;chr1:161953385-161953386		90.28	94.34	91.38	95.24	93.04	90.15	90.22	88.49	100.00	97.56	100.00	96.97	90.28	90.11	90.00	100.00	97.87	100.00	97.60	96.45	98.82	93.33	86.39	88.89	96.58	91.04	92.16	91.18	89.47	89.66	96.70	94.05	97.42	89.19	90.00	100.00	95.46	90.66	-4.80	0.526850	1.000000
K	alternative_acceptor	SNRNP35	chr12	+	chr12:123942764-123950084;chr12:123942764-123955638	chr12:123942764-123943510		chr12:123943511-123950084;chr12:123950085-123955638	chr12:123950084-123950085;chr12:123955638-123955639		0.00	0.00	9.09	NA	0.00	6.67	NA	8.33	NA	NA	0.00	NA	10.00	0.00	10.00	NA	0.00	NA	8.33	NA	0.00	NA	NA	NA	7.69	0.00	10.00	NA	0.00	0.00	NA	0.00	9.09	NA	NA	NA	8.33	0.00	-8.33	0.119250	0.606219
K	intron_retention	TRABD	chr22	+	chr22:50636425-50636503				chr22:50636424-50636425;chr22:50636503-50636504		40.00	46.94	58.33	NA	56.25	26.67	0.00	0.00	6.90	2.70	0.00	NA	11.11	7.14	6.45	3.23	4.00	NA	45.71	46.67	31.37	46.15	51.61	NA	53.57	41.67	52.94	25.00	36.00	NA	38.89	40.00	38.10	33.33	50.00	50.00	41.91	39.45	-2.46	0.870333	1.000000
K	cassette	MEI1	chr22	+	chr22:42190482-42191738	chr22:42190482-42191414;chr22:42191547-42191738		chr22:42191415-42191546			90.32	51.72	83.58	75.00	83.33	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	85.19	88.00	90.57	NA	75.00	NA	87.50	96.67	90.91	NA	84.62	NA	88.24	89.47	84.21	100.00	85.71	NA	85.19	93.50	8.31	0.209312	0.709176
N	cassette	ADA	chr20	-	chr20:43251572-43252842;chr20:43251572-43257689	chr20:43251572-43251647;chr20:43251720-43252842,chr20:43251720-43257689		chr20:43251648-43251719			83.10	55.10	79.55	89.42	84.91	83.21	100.00	95.89	100.00	96.65	94.05	96.57	96.00	98.41	96.00	95.28	90.41	96.70	69.57	85.27	84.38	90.74	82.98	88.80	72.73	92.11	87.76	91.78	85.33	89.89	83.94	83.87	76.36	88.73	83.91	90.27	74.55	88.69	14.14	0.168535	0.709176
K	intron_retention		chr12	+	chr12:102295212-102301963				chr12:102295211-102295212;chr12:102301963-102301964		4.46	18.75	1.23	10.53	5.88	12.82	2.17	2.12	2.56	2.48	1.22	0.80	2.06	2.73	2.32	2.01	0.95	1.65	15.38	2.49	14.58	0.89	1.33	0.75	NA	3.69	5.15	4.85	6.25	4.93	7.78	6.72	38.46	5.22	4.73	3.41	15.38	3.21	-12.17	0.205578	1.000000
N	cassette	HK3	chr5	-	chr5:176317943-176318388	chr5:176317943-176318037;chr5:176318193-176318388		chr5:176318038-176318192			100.00	83.33	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	94.74	100.00	94.83	100.00	100.00	93.75	100.00	100.00	100.00	NA	93.55	93.22	92.86	100.00	100.00	0.00	0.489760	0.775618
K	cassette	MIA3	chr1	+	chr1:222835675-222837339	chr1:222835675-222836229;chr1:222836374-222837339		chr1:222836230-222836373			1.64	3.03	0.00	NA	0.00	NA	0.00	4.92	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	5.26	0.00	0.00	4.08	0.00	0.00	0.00	2.70	0.00	7.35	0.00	0.00	0.00	0.00	4.35	3.45	NA	5.26	5.56	2.53	0.00	4.21	4.21	0.006740	0.267181
K	coord_cassette	UBE2K	chr4	+	chr4:39700011-39757276	chr4:39700011-39739039;chr4:39739134-39747371;chr4:39747431-39757276		chr4:39739040-39739133;chr4:39747372-39747430			95.24	100.00	94.64	100.00	100.00	NA	98.33	97.06	95.71	100.00	100.00	100.00	100.00	97.10	96.30	98.06	100.00	100.00	90.91	90.38	94.29	94.87	93.33	93.94	NA	89.09	96.23	100.00	97.44	94.12	79.49	85.48	100.00	97.06	100.00	92.98	100.00	92.81	-7.19	0.082926	0.643829
K	intron_retention	UROD	chr1	+	chr1:45479027-45479265				chr1:45479026-45479027;chr1:45479265-45479266		0.00	4.62	11.86	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	1.14	0.00	0.00	6.06	2.00	5.56	2.82	2.94	0.00	4.00	8.82	0.00	4.69	0.00	6.90	7.69	0.00	3.70	6.45	4.55	0.00	2.00	2.00	0.848107	1.000000
K	intron_retention	BSCL2	chr11	-	chr11:62458614-62458751				chr11:62458613-62458614;chr11:62458751-62458752		2.80	2.62	6.90	0.00	2.80	1.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	1.64	3.45	0.00	1.10	0.00	2.13	2.00	5.71	0.00	1.27	1.92	2.97	5.83	2.60	1.45	0.00	1.12	1.88	1.82	-0.06	0.996669	1.000000
K	jcn_only_AA	ARHGAP26,PARP8	chr5	+	chr5:50129883-50130764	chr5:50129883-50130675		chr5:50130676-50130764	chr5:50130764-50130765		0.00	0.00	1.61	0.00	2.86	NA	0.00	3.12	7.69	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	5.88	0.00	0.00	0.00	0.00	2.86	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AA	SEPW1	chr19	+	chr19:48284646-48287662	chr19:48284646-48287546		chr19:48287547-48287662	chr19:48287662-48287663		81.65	80.52	83.67	81.61	73.51	67.65	82.81	80.62	85.60	85.71	92.06	78.57	87.67	85.03	83.91	90.00	86.15	87.50	76.05	83.67	75.46	88.10	79.63	85.71	70.83	82.61	77.37	84.44	82.93	83.33	81.19	85.42	77.78	100.00	83.93	81.82	79.15	82.13	2.98	0.245257	0.663989
K	cassette	NTPCR	chr1	+	chr1:233086491-233092092	chr1:233086491-233091302;chr1:233091466-233092092		chr1:233091303-233091465			73.68	76.47	60.98	NA	83.33	NA	58.82	60.00	68.42	NA	48.00	NA	89.47	75.00	87.50	89.47	92.00	NA	76.47	75.00	72.73	NA	88.89	NA	NA	NA	88.57	NA	95.24	NA	23.08	32.35	50.00	NA	40.00	40.00	76.47	73.68	-2.79	0.489196	0.775321
N	alternative_acceptor	SMAP2	chr1	+	chr1:40878775-40879830	chr1:40878775-40879242		chr1:40879243-40879830	chr1:40879830-40879831		11.96	0.00	11.72	4.55	0.00	4.00	0.89	1.09	1.00	0.46	0.00	0.97	1.06	1.10	2.61	1.12	1.01	1.00	0.00	5.19	4.88	6.06	1.61	9.73	4.35	7.55	8.20	1.64	2.63	2.85	9.09	6.90	4.35	7.61	4.17	9.09	0.98	6.37	5.39	0.069581	0.585944
N	jcn_only_AA		chr10	-	chr10:73577388-73578373;chr10:73578091-73578373;chr10:73577252-73578373;chr10:73577460-73578373	chr10:73576165-73578373					0.00	16.67	3.70	NA	50.00	100.00	0.00	0.00	0.00	7.14	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	84.62	0.00	12.50	4.35	12.50	0.00	100.00	3.33	0.00	9.09	10.00	8.33	5.00	6.45	63.16	7.69	9.52	7.14	39.91	0.00	-39.91	0.064319	0.663989
K	intron_retention	CDK2AP2	chr11	-	chr11:67274484-67274835				chr11:67274483-67274484;chr11:67274835-67274836		3.33	0.00	0.00	0.00	4.55	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.50	3.70	2.04	0.00	0.00	0.00	0.00	0.00	1.85	3.85	2.78	3.64	1.72	3.23	4.08	2.99	0.00	1.39	1.39	0.801449	1.000000
K	jcn_only_AA	RHOT2	chr16	+	chr16:720558-720773;chr16:720558-720695	chr16:720558-720674		chr16:720675-720695;chr16:720696-720773	chr16:720695-720696;chr16:720773-720774		69.70	62.50	53.12	NA	72.73	NA	100.00	100.00	91.30	94.74	100.00	100.00	100.00	90.00	93.33	96.30	96.67	100.00	75.00	78.79	64.29	81.25	76.92	77.78	76.00	75.00	63.64	88.89	76.00	75.00	65.38	69.23	33.33	80.00	70.00	68.42	75.50	76.90	1.40	0.656380	0.846812
K	intron_retention	H2AFY	chr5	-	chr5:134686604-134696186				chr5:134686603-134686604;chr5:134696186-134696187		1.94	3.87	7.52	8.00	4.03	0.00	0.85	3.85	2.86	1.00	2.19	0.00	1.45	0.00	6.25	5.51	3.82	0.00	3.64	5.17	2.27	1.75	6.29	1.69	9.09	6.67	7.29	9.33	7.46	5.45	6.90	2.63	3.92	5.71	6.19	2.93	3.75	4.51	0.75	0.827717	1.000000
K	cassette	CAMK1	chr3	-	chr3:9804898-9809350	chr3:9804898-9807442;chr3:9807575-9809350		chr3:9807443-9807574			88.24	90.60	92.31	NA	94.05	NA	96.05	94.12	100.00	94.67	95.00	95.18	94.44	100.00	NA	87.06	94.05	93.83	96.77	89.47	96.00	96.00	90.70	96.55	100.00	100.00	91.43	90.91	93.23	100.00	NA	93.75	91.43	92.00	88.89	94.55	95.25	94.12	-1.12	0.863434	0.951806
K	alternative_acceptor	TXN2	chr22	-	chr22:36876835-36877610;chr22:36876796-36877610	chr22:36876885-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		62.50	92.31	90.91	NA	92.86	NA	74.67	100.00	86.36	66.10	66.36	63.16	75.82	76.47	78.57	81.82	74.34	100.00	83.33	92.86	70.37	90.91	86.84	NA	100.00	100.00	94.74	81.82	76.47	90.91	66.67	89.47	87.50	100.00	92.31	86.36	85.41	84.66	-0.75	0.758251	0.910949
N	cassette	CCDC109B	chr4	+	chr4:110603899-110606406	chr4:110603899-110605598;chr4:110605803-110606406		chr4:110605599-110605802			100.00	100.00	100.00	92.86	100.00	87.80	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.18	96.97	100.00	100.00	100.00	100.00	91.89	95.56	96.88	100.00	98.00	100.00	95.24	100.00	95.12	100.00	100.00	100.00	96.23	96.08	95.65	100.00	100.00	0.00	0.957184	0.988408
K	intron_retention	GUK1	chr1	+	chr1:228328990-228333211				chr1:228328989-228328990;chr1:228333211-228333212		10.00	0.00	NA	NA	0.00	NA	2.63	11.11	13.33	0.00	3.45	0.00	8.33	23.08	10.00	13.33	10.53	8.33	NA	NA	7.14	18.18	13.33	18.18	21.43	15.79	18.18	7.69	16.67	NA	31.25	23.08	8.33	17.65	25.00	16.67	8.33	15.79	7.46	0.386281	1.000000
K	jcn_only_AA	SUMO1	chr2	-	chr2:203079153-203084754	chr2:203079158-203084754		chr2:203079153-203079157	chr2:203079152-203079153		97.10	100.00	96.62	85.71	96.23	NA	96.94	95.74	95.60	100.00	97.87	95.65	97.78	97.73	95.60	97.62	97.14	98.44	93.33	97.47	100.00	91.30	96.40	96.83	NA	92.86	96.67	97.92	98.65	95.35	97.01	96.72	100.00	92.41	96.59	96.97	97.78	97.06	-0.72	0.399927	0.671467
K	intron_retention	OAZ1	chr19	+	chr19:2269744-2271780				chr19:2269743-2269744;chr19:2271780-2271781		35.56	56.41	45.61	38.10	32.35	27.27	NA	NA	NA	NA	NA	NA	NA	NA	61.54	NA	NA	NA	43.75	38.71	35.48	58.33	34.69	NA	48.21	50.00	44.44	NA	40.91	NA	39.02	47.06	32.00	37.50	45.45	48.15	45.98	38.87	-7.12	0.465780	1.000000
K	cassette	ATG12	chr5	-	chr5:115173462-115177086;chr5:115173462-115176514	chr5:115173462-115176193;chr5:115176310-115176514,chr5:115176310-115177086		chr5:115176194-115176309			5.26	8.70	7.14	0.00	0.00	3.85	2.17	3.92	6.98	3.57	2.67	5.36	2.33	3.70	5.13	2.00	1.64	2.63	4.35	6.82	4.76	7.41	6.45	9.09	0.00	6.25	4.00	4.55	6.67	4.00	2.38	1.85	0.00	1.67	4.17	2.00	2.25	4.59	2.34	0.267938	0.709176
K	intron_retention	DDB1	chr11	-	chr11:61069832-61070053				chr11:61069831-61069832;chr11:61070053-61070054		3.28	4.55	6.06	3.57	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.75	0.00	1.82	2.00	0.00	2.02	1.57	3.53	0.00	0.00	4.94	0.00	1.60	0.00	2.56	4.82	2.00	3.01	2.08	1.65	1.29	1.00	-0.29	0.939325	1.000000
K	intron_retention	OXA1L	chr14	+	chr14:23239488-23239669				chr14:23239487-23239488;chr14:23239669-23239670		33.96	24.44	38.00	35.71	30.16	NA	1.67	0.00	1.56	1.82	2.92	2.22	3.94	0.00	3.03	4.62	5.47	0.00	27.27	38.89	15.38	36.11	28.21	40.00	NA	29.41	31.03	25.00	27.27	42.42	48.28	31.18	25.81	36.23	32.53	47.62	24.44	31.69	7.25	0.704016	1.000000
K	alternative_acceptor	SLC39A13,TCIRG1	chr11	+	chr11:47436461-47436610	chr11:47436461-47436589		chr11:47436590-47436610	chr11:47436610-47436611		1.43	1.85	5.41	8.70	9.09	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	NA	0.00	1.49	1.72	6.82	7.55	0.00	0.00	2.13	6.38	3.23	7.50	5.00	3.70	3.23	2.27	3.70	10.94	6.00	0.00	1.79	1.79	0.120812	0.606219
K	alternative_last_exon	ZFYVE26	chr14	-	chr14:68215844-68217768;chr14:68196537-68217768	chr14:68215357-68217768	chr14:68195928-68196536	chr14:68213237-68215356			97.59	97.01	96.30	98.04	95.00	98.78	95.65	97.96	93.65	97.56	94.59	97.67	97.62	97.30	95.89	96.77	95.65	96.43	95.89	96.55	93.94	97.50	96.92	97.94	96.77	98.44	95.60	100.00	97.78	98.84	96.83	92.94	94.37	98.57	98.21	98.36	96.33	97.44	1.11	0.056891	0.251945
N	jcn_only_AD	BST2	chr19	-	chr19:17514136-17514488;chr19:17514136-17514484	chr19:17514136-17514507		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		0.07	0.00	0.00	0.00	0.00	0.00	9.02	5.51	6.19	6.67	7.35	7.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.17	0.00	0.00	0.00	0.00	0.00	0.00	0.740385	0.864412
N	jcn_only_AD	SRSF5	chr14	+	chr14:70235969-70237183;chr14:70235614-70237183	chr14:70236760-70237183		chr14:70235614-70235968;chr14:70235969-70236759	chr14:70235613-70235614;chr14:70235968-70235969		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.88	1.00	1.38	4.04	1.09	0.00	2.15	0.00	0.95	1.46	0.00	0.00	0.00	0.00	5.00	2.00	0.00	NA	0.00	0.00	2.00	0.00	0.00	0.00	3.57	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.218546	0.657607
N	jcn_only_AA		chr12	+	chr12:53421704-53421816	chr12:53421704-53421798		chr12:53421799-53421816	chr12:53421816-53421817		100.00	100.00	96.91	100.00	100.00	NA	99.41	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	99.51	100.00	100.00	94.44	100.00	96.88	98.15	96.77	NA	100.00	96.20	100.00	98.99	100.00	100.00	97.10	100.00	97.67	100.00	100.00	100.00	100.00	0.00	0.425069	0.694751
N	jcn_only_AD	PPP6R2	chr22	+	chr22:50879456-50882294;chr22:50881753-50882294	chr22:50879385-50882294		chr22:50879385-50879455;chr22:50879456-50881752	chr22:50879384-50879385;chr22:50879455-50879456		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	3.70	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.613176	0.809875
N	alternative_acceptor	GMFG	chr19	-	chr19:39826144-39826613;chr19:39826172-39826613	chr19:39826195-39826613		chr19:39826144-39826171;chr19:39826172-39826194	chr19:39826143-39826144;chr19:39826171-39826172		2.13	5.79	3.57	0.00	0.93	0.00	1.00	0.00	0.00	0.00	1.89	0.00	0.93	0.00	0.00	0.00	1.02	0.00	0.97	2.33	1.23	0.00	0.00	0.00	4.85	2.86	2.33	0.00	1.77	0.00	0.00	3.03	1.18	0.00	0.00	0.00	1.09	1.06	-0.02	0.281423	0.709013
K	intron_retention	PTPN2	chr18	-	chr18:12785844-12794382				chr18:12785843-12785844;chr18:12794382-12794383		14.29	5.97	18.91	12.08	6.58	10.08	20.00	30.08	24.49	30.77	22.58	29.60	23.53	23.89	28.77	26.97	19.23	26.21	12.00	15.04	13.77	21.00	16.07	19.21	0.00	12.30	17.29	15.57	14.58	17.22	10.47	11.95	8.33	15.62	14.58	19.23	10.16	14.66	4.50	0.821613	1.000000
N	coord_cassette	MAP7D1	chr1	+	chr1:36639080-36642297	chr1:36639080-36641799;chr1:36641923-36642018;chr1:36642183-36642297		chr1:36641800-36641922;chr1:36642019-36642182			98.36	91.43	97.06	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.12	95.31	NA	100.00	100.00	100.00	100.00	99.18	-0.82	0.929121	0.972993
K	cassette	CD4	chr12	+	chr12:6898829-6923307	chr12:6898829-6909237;chr12:6909354-6923307		chr12:6909238-6909353			95.24	90.00	76.36	NA	100.00	NA	92.53	96.20	95.31	95.10	94.16	99.16	90.32	97.50	88.64	96.77	90.27	97.71	NA	93.94	NA	95.95	93.84	98.18	73.08	100.00	70.45	100.00	89.87	100.00	100.00	85.00	60.00	95.31	89.04	94.67	90.00	96.85	6.85	0.064789	0.621473
K	intron_retention	HTT	chr4	+	chr4:3240706-3241572				chr4:3240705-3240706;chr4:3241572-3241573		2.50	0.00	5.13	5.26	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	5.56	8.82	0.00	0.00	3.45	0.00	4.17	0.00	0.00	0.00	0.500234	1.000000
K	intron_retention	DGAT1	chr8	-	chr8:145541833-145541923				chr8:145541832-145541833;chr8:145541923-145541924		5.00	11.54	12.50	NA	10.53	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	5.88	0.00	0.00	0.00	8.33	12.50	0.00	10.00	11.76	9.09	NA	7.69	17.65	0.00	9.68	5.00	NA	8.00	15.38	5.00	7.14	5.88	8.33	6.67	-1.66	0.789159	1.000000
N	alternative_acceptor	ACIN1	chr14	-	chr14:23533386-23533563;chr14:23533431-23533563	chr14:23533467-23533563		chr14:23533386-23533430;chr14:23533431-23533466	chr14:23533385-23533386;chr14:23533430-23533431		81.82	74.47	80.49	NA	76.00	NA	77.14	69.05	76.00	69.57	71.88	58.82	67.57	70.97	68.29	68.97	71.43	72.73	84.62	83.33	72.22	80.00	74.44	80.95	100.00	83.08	72.53	66.67	74.47	78.95	82.61	83.05	81.25	74.68	74.00	77.38	79.19	82.22	3.02	0.664704	0.878422
N	cassette	AGAP3	chr7	+	chr7:150831656-150838984;chr7:150835401-150838984	chr7:150831656-150837065,chr7:150835401-150837065;chr7:150837204-150838984		chr7:150837066-150837203			72.41	60.19	67.81	82.93	78.03	63.64	89.23	86.11	77.78	91.25	88.89	88.24	88.33	85.71	77.59	88.17	90.57	88.24	75.61	70.97	69.23	80.30	76.16	80.00	72.00	79.07	65.31	73.81	83.70	87.50	72.92	68.70	65.57	86.42	81.08	83.05	73.81	76.00	2.19	0.639572	0.868138
N	cassette	PPP3CC	chr8	+	chr8:22390532-22398127;chr8:22390532-22397244	chr8:22390532-22396981;chr8:22397012-22397244,chr8:22397012-22398127		chr8:22396982-22397011			48.39	52.38	45.36	66.25	59.46	60.19	66.67	72.50	65.88	62.50	52.38	63.33	53.85	80.00	60.77	52.86	62.50	55.29	56.52	52.70	47.13	61.40	58.62	52.50	66.67	56.07	54.41	61.22	65.00	63.46	46.34	44.88	37.04	55.07	53.12	56.64	55.19	54.39	-0.80	0.607750	0.853757
K	jcn_only_AA	AP1B1	chr22	-	chr22:29730340-29734978	chr22:29730400-29734978		chr22:29730340-29730399	chr22:29730339-29730340		96.67	100.00	98.39	92.86	95.51	NA	93.41	95.45	95.92	94.12	93.40	95.65	96.44	97.44	95.24	94.06	94.64	93.51	100.00	96.92	90.91	95.83	97.67	98.28	100.00	98.59	97.01	96.30	96.32	97.14	95.35	94.44	97.92	97.59	97.30	96.19	98.96	96.80	-2.17	0.340345	0.663989
N	jcn_only_AA	SGSM2	chr17	+	chr17:2282498-2282705;chr17:2282498-2282725	chr17:2282498-2283558		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		0.00	0.00	0.00	NA	9.52	NA	0.00	10.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	3.45	0.00	0.00	0.00	6.45	8.00	0.00	0.00	0.00	0.00	NA	0.00	4.35	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	ACP5	chr19	-	chr19:11686022-11688078				chr19:11686021-11686022;chr19:11688078-11688079		83.02	84.30	80.00	75.62	75.61	70.58	86.91	87.29	89.08	83.03	81.64	78.89	87.27	100.00	81.82	87.26	81.33	83.82	68.23	72.62	74.01	68.57	67.57	68.54	81.62	80.00	80.00	69.45	64.98	66.37	78.66	76.69	70.38	78.89	76.62	76.42	82.96	81.51	-1.45	0.937267	1.000000
K	alternative_last_exon	ADAD2,TAOK2	chr16	+	chr16:29997826-29999679;chr16:29997826-30000913	chr16:29997826-29998164	chr16:30000914-30001126	chr16:29998165-29999502			60.00	54.69	46.55	87.50	76.32	95.00	64.29	80.77	82.61	82.35	70.27	84.21	60.00	82.76	80.77	76.09	72.34	83.33	74.19	60.53	77.14	60.87	58.49	70.00	60.00	70.59	52.08	69.23	71.05	84.00	78.95	51.67	78.38	63.89	54.35	69.57	62.15	74.77	12.63	0.238891	0.458080
N	alternative_first_exon	AAMDC	chr11	+	chr11:77552107-77553524;chr11:77552271-77553524	chr11:77532227-77553524,chr11:77532288-77553524,chr11:77532284-77553524	chr11:77552065-77552106;chr11:77552184-77552270	None			63.27	71.79	63.64	65.22	61.54	58.06	76.00	63.16	54.55	82.61	80.56	68.97	75.00	63.41	64.29	57.89	80.00	65.00	72.92	63.33	73.68	71.43	74.29	66.67	78.05	62.07	57.89	60.00	71.43	67.74	57.89	62.07	50.00	50.00	61.54	60.00	73.96	63.22	-10.75	0.103279	0.278539
K	alternative_acceptor	YIPF3	chr6	-	chr6:43483785-43484464;chr6:43483852-43484464;chr6:43483926-43484464;chr6:43483929-43484464	chr6:43483834-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		100.00	92.45	90.38	NA	100.00	NA	98.51	100.00	91.53	90.32	98.00	100.00	100.00	89.47	93.10	95.65	88.37	100.00	100.00	92.59	100.00	90.91	94.74	93.94	93.55	91.94	87.01	80.95	92.31	95.65	91.67	94.03	100.00	92.86	95.65	89.71	99.25	92.27	-6.99	0.211626	0.671156
K	intron_retention	CLK4	chr5	-	chr5:178030759-178030844				chr5:178030758-178030759;chr5:178030844-178030845		8.00	9.09	2.17	0.00	6.06	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	3.23	0.00	3.70	5.00	2.38	3.70	0.00	0.00	5.56	0.00	3.33	0.00	6.45	6.12	8.82	7.14	0.00	2.86	6.03	3.23	-2.80	0.790608	1.000000
N	coord_cassette	ARHGAP10	chr4	+	chr4:148968203-148993143	chr4:148968203-148984298;chr4:148984452-148985566;chr4:148985659-148993143		chr4:148984299-148984451;chr4:148985567-148985658			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_acceptor	PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50362345;chr19:50361911-50363242	chr19:50361911-50363350		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		0.00	2.48	2.90	0.00	2.63	0.00	0.00	0.00	0.00	0.00	5.26	8.33	2.08	0.00	0.00	4.00	4.65	0.00	2.74	0.00	1.08	4.35	0.00	0.00	3.19	0.00	0.00	4.17	0.00	6.45	0.00	0.00	2.00	2.70	0.00	0.00	2.28	0.00	-2.28	0.005874	0.405868
N	alternative_donor	FGD2	chr6	+	chr6:36990147-36993567;chr6:36992570-36993567	chr6:36993106-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		3.68	2.86	NA	NA	0.00	NA	2.50	1.63	0.00	0.00	0.00	4.00	1.54	1.78	3.51	4.35	2.70	3.51	10.00	3.12	NA	NA	3.57	4.65	7.14	2.92	NA	6.45	4.17	3.17	1.37	0.00	4.00	10.53	5.00	5.69	3.43	2.35	-1.08	0.154678	0.563271
K	jcn_only_AA	RNH1	chr11	-	chr11:502182-504823	chr11:502250-504823		chr11:502182-502249	chr11:502181-502182		50.00	67.50	NA	60.00	68.63	NA	69.29	77.42	88.00	66.67	64.00	66.96	55.67	71.11	64.10	55.56	57.28	61.67	NA	NA	62.50	59.38	51.06	40.54	75.00	70.59	NA	66.27	65.10	66.15	66.67	76.92	66.67	64.04	61.36	62.50	67.50	70.59	3.09	0.954296	0.984403
K	intron_retention	EZH2	chr7	-	chr7:148506483-148507424				chr7:148506482-148506483;chr7:148507424-148507425		8.00	0.00	8.33	2.27	5.00	1.61	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.86	0.00	0.00	0.00	3.51	0.00	2.44	2.08	0.00	0.00	0.00	4.44	2.56	0.00	3.03	7.69	2.56	0.00	2.65	2.65	0.249477	1.000000
K	intron_retention	VRK3	chr19	-	chr19:50480042-50482339				chr19:50480041-50480042;chr19:50482339-50482340		6.45	4.41	13.89	12.00	8.57	13.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	NA	0.00	0.00	7.69	7.14	5.56	10.00	4.00	15.38	12.50	10.00	7.69	NA	4.35	9.09	12.50	11.76	10.34	16.67	6.67	25.00	6.05	6.79	0.74	0.869750	1.000000
N	jcn_only_AA	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556573;chr11:62555000-62556494;chr11:62555000-62556597	chr11:62555000-62556658		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.04	9.09	0.00	7.35	0.00	NA	0.00	0.00	0.00	9.38	20.69	0.00	14.71	12.90	9.68	0.00	0.00	0.00	0.00	0.00	0.906902	0.968555
K	intron_retention	STUB1	chr16	+	chr16:732077-732164				chr16:732076-732077;chr16:732164-732165		25.33	31.03	24.39	35.65	36.91	39.88	32.80	22.22	23.73	36.47	35.43	37.93	36.51	20.00	23.73	32.04	29.41	41.51	27.63	16.13	24.19	32.84	27.27	29.09	25.17	10.20	19.32	29.41	26.47	34.88	23.53	20.34	25.48	25.00	27.50	38.38	29.33	21.11	-8.22	0.045166	1.000000
N	jcn_only_AA	CAMTA2	chr17	-	chr17:4872277-4872444;chr17:4872255-4872444	chr17:4872275-4872444		chr17:4872255-4872274;chr17:4872275-4872276	chr17:4872254-4872255;chr17:4872274-4872275		0.00	6.45	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.76	NA	0.00	0.00	4.55	0.00	0.00	3.45	0.00	0.00	0.00	0.182558	0.663989
K	intron_retention	INPPL1	chr11	+	chr11:71940797-71940967				chr11:71940796-71940797;chr11:71940967-71940968		8.82	26.92	18.46	NA	NA	NA	1.39	0.00	1.56	0.00	3.12	0.00	2.15	1.41	1.56	0.00	2.08	0.00	NA	7.32	NA	NA	15.38	5.56	25.64	11.36	13.56	NA	17.86	NA	7.69	10.64	20.00	17.86	13.21	10.00	20.00	7.51	-12.49	0.461613	1.000000
K	intron_retention	NCL	chr2	-	chr2:232319979-232320111				chr2:232319978-232319979;chr2:232320111-232320112		6.85	0.90	4.55	0.84	0.81	0.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	6.15	2.07	2.42	1.64	0.68	0.90	0.00	3.26	0.00	0.79	0.88	8.45	5.56	2.55	1.29	0.65	1.46	0.90	3.08	2.18	0.326357	1.000000
K	coord_cassette	PCBP2,RP11-793H13.8	chr12	+	chr12:53856352-53861004	chr12:53856352-53858543;chr12:53858637-53859715;chr12:53859758-53861004		chr12:53858544-53858636;chr12:53859716-53859757			80.61	77.69	77.16	87.50	83.62	84.00	91.39	83.74	87.93	90.57	91.06	87.98	88.39	84.48	86.67	87.35	87.55	90.05	85.11	70.89	86.25	80.41	84.21	81.67	89.13	86.75	90.23	86.96	89.63	81.82	81.01	81.82	82.54	80.98	85.42	82.35	86.75	82.38	-4.38	0.175568	0.643829
K	intron_retention		chr1	+	chr1:113242433-113242515				chr1:113242432-113242433;chr1:113242515-113242516		2.49	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.00	0.00	0.63	0.00	0.00	0.00	4.84	0.00	1.20	4.48	3.33	0.00	1.55	3.10	5.13	0.00	2.78	0.00	4.76	0.00	0.92	0.92	0.146848	1.000000
N	cassette	PPP1R9B	chr17	-	chr17:48216682-48218633;chr17:48216947-48218633	chr17:48216682-48217457,chr17:48216947-48217457;chr17:48217594-48218633		chr17:48217458-48217593			94.44	94.79	96.15	NA	100.00	NA	100.00	98.11	99.17	100.00	100.00	100.00	100.00	100.00	98.66	100.00	100.00	100.00	100.00	90.70	100.00	100.00	95.08	100.00	100.00	92.31	97.06	100.00	97.70	100.00	100.00	92.75	88.89	100.00	96.70	89.66	100.00	96.28	-3.72	0.599623	0.849488
N	jcn_only_AA	JDP2	chr14	+	chr14:75904825-75911792;chr14:75904825-75928132	chr14:75904825-75928128		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		97.30	100.00	97.03	80.77	94.67	57.69	96.12	95.60	93.83	78.68	91.98	80.61	91.52	94.83	95.59	59.62	93.66	81.88	91.67	100.00	94.23	76.47	96.63	60.98	100.00	94.44	100.00	66.67	94.29	38.10	96.08	98.59	95.12	74.51	91.80	65.88	95.62	95.84	0.22	0.725989	0.877626
K	intron_retention	TCIRG1	chr11	+	chr11:67811812-67812424				chr11:67811811-67811812;chr11:67812424-67812425		1.42	0.96	2.30	0.00	0.00	NA	0.38	0.66	0.00	0.75	0.57	0.40	0.00	0.55	2.14	1.19	0.64	0.00	0.00	2.27	0.00	1.14	2.16	0.00	8.89	2.64	2.93	2.14	2.67	0.00	0.49	2.13	0.00	4.00	3.27	1.23	0.19	1.04	0.85	0.978161	1.000000
N	alternative_acceptor	ZNF529-AS1	chr19	+	chr19:7987233-7987368	chr19:7987233-7987329		chr19:7987330-7987368	chr19:7987368-7987369		NA	100.00	NA	NA	100.00	NA	100.00	100.00	95.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	90.91	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.43	NA	NA	NA	NA	NA	100.00	NA	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention	SIRT2	chr19	-	chr19:39369951-39370073				chr19:39369950-39369951;chr19:39370073-39370074		0.00	2.17	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	3.45	0.00	1.05	0.00	0.00	4.00	4.55	0.00	0.00	0.00	4.76	5.56	3.77	1.41	1.56	1.32	0.00	1.85	1.85	0.288651	1.000000
K	alternative_donor	PSMA1,RP11-140L24.4	chr11	-	chr11:14540588-14541842	chr11:14540588-14541450		chr11:14541451-14541842	chr11:14541842-14541843		11.11	0.00	13.19	NA	4.76	NA	6.03	14.81	16.26	10.29	7.38	13.04	5.79	15.04	16.13	9.60	6.57	8.26	NA	6.85	6.67	9.84	8.86	12.50	NA	15.15	12.00	7.14	5.45	7.14	13.16	18.06	7.69	13.11	11.63	14.47	5.91	13.98	8.07	0.009552	0.213126
K	alternative_first_exon	CTD-3214H19.16,TRAPPC5	chr19	+	chr19:7743870-7747127	chr19:7745765-7747127,chr19:7745936-7747127,chr19:7745913-7747127	chr19:7743810-7743869	None			87.10	100.00	88.57	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	98.25	100.00	100.00	100.00	100.00	95.45	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	-1.56	0.155647	0.352185
K	cassette	MIIP	chr1	+	chr1:12079610-12082151	chr1:12079610-12081701;chr1:12081898-12082151		chr1:12081702-12081897			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	96.43	100.00	100.00	100.00	94.12	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	NA	NA	100.00	100.00	100.00	0.00	0.179402	0.709176
K	jcn_only_AA	MAN1B1	chr9	+	chr9:140001262-140001726	chr9:140001262-140001701		chr9:140001702-140001726	chr9:140001726-140001727		86.11	86.84	95.12	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	95.35	100.00	90.74	93.10	93.62	88.24	91.53	100.00	96.43	100.00	93.62	100.00	91.30	100.00	96.30	94.64	94.74	92.86	86.49	97.50	95.59	94.81	-0.77	0.996134	0.998824
K	alternative_donor	PANK2	chr20	+	chr20:3889553-3891223;chr20:3888926-3891223	chr20:3888783-3891223		chr20:3888783-3888925;chr20:3888926-3889552	chr20:3888782-3888783;chr20:3888925-3888926		31.58	36.67	24.39	NA	50.00	NA	35.14	27.42	40.00	23.81	16.67	15.38	25.71	37.10	36.54	28.21	26.09	32.35	NA	34.09	21.43	NA	33.33	38.46	NA	44.26	43.18	29.41	20.00	48.15	21.74	28.57	6.67	37.04	25.00	38.10	30.43	32.84	2.41	0.427603	0.688660
K	intron_retention	ADCY7	chr16	+	chr16:50349050-50349269				chr16:50349049-50349050;chr16:50349269-50349270		3.03	5.26	10.26	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.13	0.60	0.00	0.00	0.00	0.00	0.00	0.00	3.90	NA	0.00	4.69	3.45	0.00	0.86	10.00	0.00	0.00	0.00	8.33	7.14	0.00	3.12	3.80	3.95	0.00	1.94	1.94	0.655292	1.000000
N	jcn_only_AD	SHARPIN	chr8	-	chr8:145158129-145159167;chr8:145158129-145158927;chr8:145158129-145159319;chr8:145158129-145158455	chr8:145158129-145158749		chr8:145158456-145158749;chr8:145158750-145158927;chr8:145158928-145159167;chr8:145159168-145159319	chr8:145158749-145158750;chr8:145158927-145158928;chr8:145159167-145159168;chr8:145159319-145159320		0.00	0.00	7.69	NA	NA	NA	0.00	0.00	0.00	0.00	5.00	NA	0.00	0.00	16.67	6.67	0.00	0.00	0.00	6.67	0.00	NA	4.76	NA	NA	0.00	9.52	0.00	5.26	NA	8.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.177940	0.657607
N	alternative_acceptor	SARAF	chr8	-	chr8:29924427-29927157;chr8:29921414-29927157	chr8:29924435-29927157		chr8:29921414-29924426;chr8:29924427-29924434	chr8:29921413-29921414;chr8:29924426-29924427		85.48	100.00	89.04	NA	72.97	NA	81.43	87.80	100.00	76.60	84.51	76.00	81.82	100.00	87.50	84.00	92.31	89.29	57.69	67.50	51.85	100.00	76.67	75.00	100.00	79.55	77.14	81.25	100.00	100.00	65.71	71.23	55.56	78.26	77.78	100.00	81.62	82.52	0.89	0.871747	0.956197
K	intron_retention	GRIPAP1	chrX	-	chrX:48832524-48832652				chrX:48832523-48832524;chrX:48832652-48832653		8.45	0.00	6.41	0.00	2.78	5.88	0.00	3.28	0.00	0.00	0.00	0.00	5.88	3.28	4.48	0.00	3.12	3.85	0.00	4.76	2.99	11.11	4.76	7.14	0.00	5.33	5.41	12.12	7.69	7.41	1.85	5.68	5.41	10.20	5.08	5.95	0.00	4.02	4.02	0.632279	1.000000
K	alternative_donor	SH3BP2	chr4	+	chr4:2826458-2826852	chr4:2826487-2826852		chr4:2826458-2826486	chr4:2826457-2826458		17.86	12.50	14.81	NA	9.09	NA	3.53	3.85	2.78	2.13	5.11	4.88	8.24	3.77	6.82	3.09	6.25	2.70	0.00	3.03	6.67	5.71	7.50	8.89	14.29	7.69	10.81	12.20	10.53	4.17	0.00	8.70	NA	7.14	8.82	10.42	8.24	3.81	-4.43	0.661947	0.849235
K	jcn_only_AA	PSMC5	chr17	+	chr17:61904875-61905188;chr17:61904875-61905478	chr17:61904875-61905497					100.00	100.00	90.48	NA	100.00	NA	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr19	+	chr19:45645717-45646778				chr19:45645716-45645717;chr19:45646778-45646779		7.69	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	5.88	0.00	NA	13.64	0.00	5.88	0.00	0.00	NA	0.00	3.85	0.00	0.00	0.00	4.76	4.17	0.00	-4.17	0.940622	1.000000
N	cassette	NADSYN1	chr11	+	chr11:71191926-71192968	chr11:71191926-71192401;chr11:71192451-71192968		chr11:71192402-71192450			81.82	66.67	73.68	NA	60.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	95.00	100.00	100.00	NA	62.50	71.43	86.36	66.67	66.67	62.50	NA	73.68	65.31	72.22	66.67	84.62	57.14	66.67	50.00	100.00	73.08	72.00	66.67	73.68	7.01	0.939296	0.985128
K	intron_retention		chr1	-	chr1:35642076-35642919				chr1:35642075-35642076;chr1:35642919-35642920		8.16	0.00	11.63	1.42	2.08	2.21	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	6.67	0.00	NA	3.10	2.70	3.03	4.26	3.95	8.00	1.74	4.17	5.56	3.12	3.57	1.52	7.94	8.33	6.39	3.90	5.77	6.58	2.42	6.05	3.63	0.488715	1.000000
K	jcn_only_AD	ANXA6	chr5	-	chr5:150512749-150516835	chr5:150512749-150513987					96.27	100.00	96.83	100.00	100.00	NA	97.99	100.00	100.00	96.03	94.68	95.35	96.91	100.00	95.97	93.13	96.13	96.19	NA	90.79	88.00	87.88	91.55	93.88	NA	97.01	98.23	95.00	92.75	93.94	92.68	93.75	100.00	100.00	97.44	94.12	99.00	96.64	-2.36	0.174243	0.657607
K	alternative_acceptor	PCBD1	chr10	-	chr10:72642243-72644908	chr10:72643806-72644908		chr10:72642243-72643805	chr10:72642242-72642243		72.22	75.00	78.57	66.67	75.36	58.82	89.04	75.00	89.66	87.76	86.42	88.10	83.91	87.50	77.42	91.38	88.00	92.31	72.06	88.24	82.76	77.78	83.05	90.91	71.43	73.33	76.67	86.36	87.32	74.07	63.64	71.43	76.00	70.27	77.27	86.11	75.50	74.16	-1.34	0.801643	0.926022
N	cassette	TRPV2	chr17	+	chr17:16332297-16335279;chr17:16332297-16338203;chr17:16332297-16336887;chr17:16332297-16340102	chr17:16332297-16335097;chr17:16335165-16336887,chr17:16335165-16340102,chr17:16335165-16335279,chr17:16335165-16338203		chr17:16335098-16335164			74.65	78.26	73.53	88.24	65.38	84.00	95.59	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	96.92	97.40	100.00	67.39	89.83	88.46	85.71	83.33	100.00	73.68	93.62	71.43	97.62	76.71	97.67	83.78	97.22	72.73	95.38	88.33	93.10	75.97	91.72	15.75	0.167416	0.709176
K	alternative_donor	TMEM205	chr19	-	chr19:11456305-11456883;chr19:11456305-11456683	chr19:11456305-11456802		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		93.55	89.36	84.88	95.45	89.29	82.61	90.48	100.00	95.08	83.33	86.21	81.48	93.33	94.12	89.09	92.86	85.71	93.33	88.89	86.21	89.61	85.19	88.37	77.27	95.24	93.33	86.84	87.50	82.61	89.47	83.33	86.96	83.33	80.00	84.85	85.42	89.92	93.44	3.52	0.592757	0.801588
K	jcn_only_AA	EPB41,RER1	chr1	+	chr1:2332375-2333645	chr1:2332375-2333535		chr1:2333536-2333645	chr1:2333645-2333646		7.00	6.71	8.14	5.88	5.02	7.25	1.18	1.94	1.67	1.35	0.00	1.79	1.53	2.24	3.55	1.92	0.00	0.97	5.53	9.25	4.68	5.10	7.47	4.12	7.14	5.07	6.47	2.83	3.12	2.59	10.14	5.88	6.14	7.91	7.69	5.43	5.83	6.04	0.20	0.505328	0.758162
K	coord_cassette	UBE2B	chr5	+	chr5:133710155-133724015	chr5:133710155-133712359;chr5:133712386-133716409;chr5:133716500-133724015		chr5:133712360-133712385;chr5:133716410-133716499			96.30	100.00	98.10	100.00	100.00	100.00	100.00	100.00	98.51	100.00	98.57	100.00	100.00	100.00	98.59	100.00	100.00	97.40	94.44	96.91	100.00	98.67	98.59	100.00	NA	97.94	98.63	100.00	100.00	100.00	95.60	92.98	100.00	99.04	100.00	96.58	100.00	97.42	-2.58	0.442195	0.684552
N	cassette	C19orf70	chr19	-	chr19:5678660-5679596	chr19:5678660-5679355;chr19:5679408-5679596		chr19:5679356-5679407			100.00	98.04	100.00	98.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.43	NA	100.00	100.00	100.00	100.00	100.00	89.47	94.44	98.25	100.00	96.97	99.22	100.00	0.78	0.147269	0.709176
N	jcn_only_AD	IFRD1	chr7	+	chr7:112111089-112112273;chr7:112108137-112112273	chr7:112108171-112112273		chr7:112108137-112108170;chr7:112108171-112111088	chr7:112108136-112108137;chr7:112108170-112108171		98.55	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	93.83	93.62	92.05	91.53	91.30	NA	97.22	91.94	92.31	100.00	92.50	98.01	94.18	96.55	94.96	98.67	92.16	100.00	98.28	-1.72	0.268289	0.657607
N	jcn_only_AD	SF3A2	chr19	+	chr19:2243544-2244542	chr19:2243573-2244542		chr19:2243544-2243572	chr19:2243543-2243544		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	RPS3	chr11	+	chr11:75111822-75115192				chr11:75111821-75111822;chr11:75115192-75115193		100.00	100.00	100.00	100.00	100.00	100.00	96.74	98.39	100.00	95.67	100.00	94.47	100.00	100.00	100.00	95.87	100.00	100.00	100.00	100.00	90.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.24	100.00	100.00	91.43	100.00	100.00	100.00	95.12	100.00	100.00	0.00	0.890139	1.000000
N	jcn_only_AA	MFSD10	chr4	-	chr4:2932604-2932787	chr4:2932681-2932787		chr4:2932604-2932680	chr4:2932603-2932604		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	98.59	100.00	100.00	100.00	96.63	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.793163	0.910039
K	intron_retention	SMUG1	chr12	-	chr12:54575432-54576287				chr12:54575431-54575432;chr12:54576287-54576288		35.29	38.00	40.74	33.33	26.53	20.00	20.00	37.50	25.00	13.33	24.14	12.50	39.13	41.18	46.43	33.33	26.32	20.00	12.96	35.29	25.76	NA	33.33	NA	38.46	42.11	37.50	54.55	52.17	29.41	17.86	31.43	18.75	35.71	45.00	26.67	29.00	36.39	7.39	0.477966	1.000000
K	intron_retention	DMAP1	chr1	+	chr1:44685982-44686230				chr1:44685981-44685982;chr1:44686230-44686231		0.00	2.97	0.00	0.00	2.33	9.43	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	2.63	0.00	1.59	NA	0.00	NA	1.05	5.00	0.00	NA	0.00	0.00	3.57	0.00	2.30	0.00	0.00	0.00	1.67	0.00	-1.67	0.879145	1.000000
K	intron_retention		chr20	+	chr20:2637542-2637726				chr20:2637541-2637542;chr20:2637726-2637727		3.12	5.22	4.92	3.61	2.54	1.64	1.96	0.00	0.00	0.00	0.00	0.00	1.05	0.00	1.08	0.54	0.69	0.00	4.03	6.12	1.05	4.39	5.69	6.98	5.71	0.00	4.48	1.41	3.39	1.71	5.66	8.86	4.24	6.06	7.06	6.25	4.13	1.56	-2.57	0.870744	1.000000
K	intron_retention		chr20	.	chr20:44751859-44755278				chr20:44751858-44751859;chr20:44755278-44755279		6.21	0.00	5.00	0.94	0.00	1.52	0.00	0.94	0.53	1.01	3.85	1.35	0.00	0.72	1.25	0.86	2.08	1.56	0.00	3.59	1.54	7.18	7.69	8.45	0.00	3.67	3.88	2.67	5.71	1.98	1.98	1.32	0.00	6.41	5.77	6.31	0.00	2.79	2.79	0.035360	1.000000
N	jcn_only_AD	ATG16L2	chr11	+	chr11:72539554-72539773	chr11:72539674-72539773		chr11:72539554-72539673	chr11:72539553-72539554		0.00	2.26	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.544467	0.764759
K	intron_retention		chr16	+	chr16:50342323-50342577				chr16:50342322-50342323;chr16:50342577-50342578		4.76	0.00	11.11	NA	6.67	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.98	0.00	0.00	0.00	2.27	0.00	0.00	2.44	NA	NA	2.86	0.00	5.88	5.77	0.00	NA	2.86	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.49	1.60	1.11	0.980805	1.000000
K	intron_retention	EEF2	chr19	-	chr19:3980708-3980838				chr19:3980707-3980708;chr19:3980838-3980839		0.00	0.00	0.45	3.12	0.70	18.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.36	1.54	0.00	0.00	0.32	5.10	0.00	0.51	0.00	0.00	0.00	8.41	2.22	17.57	0.30	1.00	0.45	2.50	0.00	-2.50	0.818412	1.000000
K	intron_retention	ARAP1	chr11	-	chr11:72423385-72423482				chr11:72423384-72423385;chr11:72423482-72423483		0.00	5.41	1.10	NA	10.00	NA	0.59	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.95	0.00	7.69	0.00	0.00	0.00	1.04	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	2.29	0.00	-2.29	0.352481	1.000000
K	intron_retention		chr1	-	chr1:1247749-1247819				chr1:1247748-1247749;chr1:1247819-1247820		12.82	24.47	12.90	8.70	17.78	7.55	0.00	NA	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	9.01	11.11	5.49	12.50	13.95	3.45	24.53	0.00	6.98	0.00	8.11	0.00	27.27	16.13	14.79	6.06	5.00	12.50	11.90	11.11	-0.79	0.992686	1.000000
K	intron_retention	EML3	chr11	-	chr11:62370151-62370230				chr11:62370150-62370151;chr11:62370230-62370231		5.00	2.73	1.75	1.69	3.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	1.12	3.12	2.50	0.00	1.72	0.00	4.14	0.00	1.85	0.00	2.08	0.00	6.67	0.00	3.06	0.00	0.00	3.03	1.93	1.56	-0.36	0.654151	1.000000
K	intron_retention	CD46	chr1	+	chr1:207966954-207968349				chr1:207966953-207966954;chr1:207968349-207968350		96.15	95.50	99.32	100.00	97.65	92.00	99.06	100.00	100.00	100.00	100.00	98.89	97.06	100.00	100.00	97.44	100.00	97.83	92.06	92.98	97.01	94.34	96.49	97.30	100.00	100.00	99.33	100.00	96.08	98.61	97.37	91.82	94.83	96.74	96.81	96.69	96.28	98.69	2.41	0.666279	1.000000
K	intron_retention	NANS	chr9	+	chr9:100843365-100845127				chr9:100843364-100843365;chr9:100845127-100845128		5.68	1.01	0.00	0.86	0.00	0.30	5.26	4.26	5.08	0.88	3.17	1.37	1.19	4.08	1.52	1.71	1.35	0.96	0.92	7.27	1.66	1.56	1.80	1.66	1.09	6.98	0.00	2.33	1.41	1.64	3.70	2.67	1.30	1.18	4.04	2.18	1.14	4.97	3.83	0.062843	1.000000
N	alternative_donor	SUN2	chr22	-	chr22:39132386-39134177	chr22:39132386-39133935		chr22:39133936-39134177	chr22:39134177-39134178		3.85	0.00	3.08	NA	0.00	NA	0.00	6.25	1.67	0.00	0.00	5.41	0.00	7.35	7.27	2.86	0.00	9.68	0.00	3.66	0.00	3.23	1.85	28.12	NA	16.92	1.37	12.50	0.00	27.78	8.33	2.63	NA	6.00	2.50	24.14	0.00	6.80	6.80	0.011603	0.225202
N	intron_retention		chr11	+	chr11:65349437-65351711				chr11:65349436-65349437;chr11:65351711-65351712		68.00	39.02	72.54	25.00	35.29	NA	60.94	54.07	53.16	69.70	77.27	100.00	78.26	54.79	60.00	78.12	83.75	80.00	38.10	52.05	36.00	61.54	43.75	59.09	100.00	46.73	54.76	56.67	38.10	40.00	48.28	50.00	55.00	63.89	52.63	67.39	57.97	53.06	-4.91	0.887938	1.000000
K	intron_retention	GAA	chr17	+	chr17:78085900-78086376				chr17:78085899-78085900;chr17:78086376-78086377		8.33	10.64	11.11	0.00	5.71	NA	0.70	0.00	0.00	0.00	0.76	0.00	1.62	0.00	0.00	0.00	0.00	0.00	4.17	5.19	4.26	1.79	4.51	0.00	16.00	3.20	11.21	3.17	2.75	0.00	3.17	9.18	6.82	3.66	3.45	1.29	5.50	3.19	-2.31	0.972248	1.000000
N	alternative_donor	PPP6R2	chr22	+	chr22:50881753-50882294;chr22:50879385-50882294	chr22:50879456-50882294		chr22:50879385-50879455;chr22:50879456-50881752	chr22:50879384-50879385;chr22:50879455-50879456		75.00	88.89	73.47	92.00	92.11	96.15	95.00	90.00	94.74	90.00	92.31	NA	85.00	89.47	86.36	84.62	NA	NA	94.74	78.12	94.44	78.26	81.08	72.22	90.91	75.00	76.32	80.00	83.33	85.00	80.85	75.51	92.31	56.25	69.57	61.29	91.61	79.48	-12.12	0.016042	0.261029
K	cassette	ERLEC1	chr2	+	chr2:54040211-54041996	chr2:54040211-54041679;chr2:54041758-54041996		chr2:54041680-54041757			97.73	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.224946	0.709176
N	cassette	UFD1L	chr22	-	chr22:19462624-19466347;chr22:19462624-19466605	chr22:19462624-19462992;chr22:19463126-19466605,chr22:19463126-19466347		chr22:19462993-19463125			78.57	93.33	83.33	100.00	86.21	NA	80.00	93.75	81.08	86.89	84.48	89.74	83.33	92.50	100.00	83.33	88.71	85.42	64.71	85.71	82.14	83.78	74.58	76.47	NA	90.00	74.42	78.05	84.78	89.29	100.00	84.85	60.00	87.50	76.47	85.19	80.00	91.25	11.25	0.090607	0.656661
N	alternative_acceptor	MRPL20	chr1	-	chr1:1337637-1341188;chr1:1337806-1341188;chr1:1337631-1341188	chr1:1337982-1341188		chr1:1337631-1337636;chr1:1337637-1337805;chr1:1337806-1337981	chr1:1337630-1337631;chr1:1337636-1337637;chr1:1337805-1337806		11.11	4.14	8.45	8.79	7.14	6.67	2.17	0.00	6.06	4.44	1.67	0.00	1.75	0.00	7.50	0.00	1.32	0.00	5.04	5.13	6.25	9.52	6.00	10.00	4.44	7.14	4.92	6.82	6.25	7.58	10.00	6.58	5.41	8.20	6.76	9.52	4.29	6.13	1.84	0.429823	0.740984
N	alternative_acceptor	DMAP1	chr1	+	chr1:44685150-44685483;chr1:44685150-44685477	chr1:44685150-44685451		chr1:44685452-44685477;chr1:44685478-44685483	chr1:44685477-44685478;chr1:44685483-44685484		6.67	0.00	5.00	0.00	3.70	4.55	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	6.25	NA	0.00	7.14	5.88	NA	8.33	9.09	0.00	4.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.174997	0.660713
N	coord_cassette	SAFB2	chr19	-	chr19:5600272-5610005	chr19:5600272-5604593;chr19:5604707-5604797;chr19:5604948-5610005		chr19:5604594-5604706;chr19:5604798-5604947			92.59	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	93.10	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	95.83	95.92	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AA	COPS7A	chr12	+	chr12:57922793-57924937;chr12:57922793-57922946	chr12:57922793-57922942		chr12:57922943-57922946;chr12:57922947-57924937	chr12:57922946-57922947;chr12:57924937-57924938		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.62	100.00	100.00	93.10	96.30	100.00	100.00	100.00	100.00	0.00	0.183551	0.663989
N	jcn_only_AD	NAA10	chrX	-	chrX:153198038-153199355;chrX:153198038-153199413	chrX:153198038-153199395		chrX:153199356-153199395;chrX:153199396-153199413	chrX:153199395-153199396;chrX:153199413-153199414		94.74	100.00	100.00	100.00	98.08	100.00	95.65	100.00	100.00	100.00	95.38	93.10	98.65	92.31	100.00	98.51	100.00	97.14	94.94	100.00	97.67	100.00	98.28	100.00	100.00	NA	100.00	100.00	98.04	94.12	NA	80.00	94.03	95.00	96.88	92.00	97.15	97.37	0.22	0.847638	0.928405
K	cassette	CSF1R	chr5	-	chr5:149437156-149440424	chr5:149437156-149439262;chr5:149439426-149440424		chr5:149439263-149439425			94.90	94.55	95.36	88.89	95.54	NA	99.41	99.47	100.00	99.14	98.79	100.00	99.38	99.43	98.55	98.44	99.00	99.22	94.59	94.46	95.95	94.12	96.40	97.60	92.21	96.43	96.68	98.31	96.15	100.00	91.49	93.38	89.29	96.36	95.75	97.44	94.57	95.67	1.10	0.597583	0.849174
N	alternative_donor	CSE1L	chr20	+	chr20:47710824-47711268	chr20:47711152-47711268		chr20:47710824-47711151	chr20:47710823-47710824		0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.67	0.00	0.00	0.00	2.86	0.00	0.00	0.00	7.69	4.35	0.00	4.88	2.44	3.23	0.00	0.00	0.00	0.734895	0.890213
N	cassette	HK3	chr5	-	chr5:176317732-176318388	chr5:176317732-176317822;chr5:176317943-176318388		chr5:176317823-176317942			100.00	92.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	cassette	GMPPA	chr2	+	chr2:220368936-220370179	chr2:220368936-220369949;chr2:220370085-220370179		chr2:220369950-220370084			90.91	86.27	100.00	91.67	85.29	92.59	91.30	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	94.87	95.00	90.62	91.30	100.00	89.66	92.31	95.24	100.00	90.70	100.00	89.29	87.88	94.74	81.82	91.43	94.22	100.00	5.78	0.375902	0.709410
N	jcn_only_AD	MS4A7	chr11	+	chr11:60146138-60150601;chr11:60131340-60150601	chr11:60146090-60150601		chr11:60131340-60146089;chr11:60146090-60146137	chr11:60131339-60131340;chr11:60146089-60146090		14.29	5.41	11.34	NA	7.50	NA	11.11	12.13	7.35	7.49	7.24	8.06	9.07	12.54	16.67	10.11	6.23	7.37	16.67	11.40	10.00	15.38	13.53	8.89	NA	14.68	8.33	9.30	11.11	13.04	13.64	14.46	0.00	10.91	11.85	8.64	9.07	13.09	4.02	0.171216	0.657607
K	alternative_first_exon	ARF1	chr1	+	chr1:228271011-228284778,chr1:228271214-228284778,chr1:228276423-228284778,chr1:228275979-228284778,chr1:228271006-228284778,chr1:228271054-228284778;chr1:228271076-228284778;chr1:228284206-228284778	chr1:228270467-228284778,chr1:228270552-228284778	chr1:228270851-228271075;chr1:228284152-228284205	chr1:228270361-228270466			90.97	76.67	92.51	100.00	96.15	NA	95.61	94.44	95.18	97.92	94.32	98.82	95.37	95.10	98.27	96.71	96.96	99.51	NA	93.70	86.84	93.55	90.77	95.11	92.31	93.68	94.83	96.77	98.97	98.04	92.31	93.24	85.71	95.49	94.17	95.85	92.31	93.69	1.38	0.306625	0.521457
K	cassette	RUFY1	chr5	+	chr5:179012867-179016546	chr5:179012867-179013331;chr5:179013477-179016546		chr5:179013332-179013476			2.00	0.00	0.93	0.00	2.04	NA	0.00	0.00	2.17	1.47	0.00	0.00	0.00	5.56	1.89	1.82	1.14	1.64	6.67	2.70	0.00	2.94	2.86	2.13	0.00	0.00	3.23	3.85	1.69	2.56	0.00	2.82	0.00	2.53	3.03	4.35	0.00	1.00	1.00	0.685765	0.885445
K	intron_retention		chr1	-	chr1:156220788-156221193				chr1:156220787-156220788;chr1:156221193-156221194		9.80	18.75	22.22	0.00	6.25	NA	2.22	5.71	0.00	0.00	4.76	0.00	2.38	0.00	1.56	3.08	4.35	0.00	15.38	5.26	7.69	9.09	6.52	9.43	0.00	12.50	10.17	12.50	5.56	9.52	15.38	10.00	15.38	11.11	9.62	12.50	8.88	7.76	-1.12	0.980474	1.000000
N	alternative_acceptor	MYL5	chr4	+	chr4:674930-675681	chr4:674930-675622		chr4:675623-675681	chr4:675681-675682		8.70	12.50	6.38	21.57	15.25	17.81	46.15	NA	5.00	NA	41.67	NA	36.36	NA	14.29	36.36	NA	NA	9.84	15.00	19.15	27.27	11.11	27.27	22.96	25.00	9.38	36.36	36.36	15.79	16.13	5.88	17.71	27.78	19.05	11.54	20.34	15.56	-4.77	0.267596	0.709013
K	intron_retention	TSSC4	chr11	+	chr11:2423681-2423840				chr11:2423680-2423681;chr11:2423840-2423841		8.70	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	21.43	11.90	13.79	0.00	2.50	2.56	0.00	2.63	2.63	0.631259	1.000000
K	jcn_only_AA	RBM39	chr20	-	chr20:34317285-34317383	chr20:34317288-34317383		chr20:34317285-34317287	chr20:34317284-34317285		98.53	100.00	98.02	100.00	94.29	NA	96.81	98.46	96.12	97.04	96.40	96.40	96.85	95.92	96.19	96.08	97.12	95.65	91.67	95.56	96.88	95.87	97.06	97.18	NA	97.44	97.13	91.25	92.94	96.97	97.92	97.84	NA	96.34	98.84	96.17	96.83	97.68	0.85	0.621380	0.831281
K	alternative_first_exon	AES	chr19	-	chr19:3061256-3062461,chr19:3061256-3062789;chr19:3061256-3062697	chr19:3061256-3062171	chr19:3062698-3063105	chr19:3062172-3062555			91.07	91.67	96.30	NA	90.48	NA	86.21	88.89	94.59	82.05	82.76	84.44	87.88	92.39	86.21	93.75	82.22	85.00	94.12	83.33	96.67	91.67	82.86	77.78	100.00	88.06	96.97	94.74	88.24	88.89	90.32	92.00	93.75	81.82	82.14	81.25	92.71	89.60	-3.11	0.208312	0.415070
N	alternative_acceptor	DOCK10	chr2	-	chr2:225630555-225634927;chr2:225630883-225634927	chr2:225633665-225634927		chr2:225630555-225630882;chr2:225630883-225633664	chr2:225630554-225630555;chr2:225630882-225630883		6.34	1.14	9.52	0.00	1.11	0.00	1.27	1.47	0.00	0.00	1.41	0.00	1.85	1.54	0.00	0.00	2.48	0.00	0.00	3.96	0.00	3.03	6.56	5.08	0.00	3.76	5.19	3.57	2.87	0.00	2.13	4.35	0.00	8.77	7.09	3.28	0.57	2.94	2.38	0.021198	0.527491
K	intron_retention		chr2	-	chr2:201718717-201719338				chr2:201718716-201718717;chr2:201719338-201719339		3.57	2.24	4.97	2.10	1.68	0.87	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	1.56	0.00	0.00	0.00	2.65	4.49	3.27	3.76	2.27	4.83	0.00	2.47	2.98	3.19	1.50	2.01	6.21	4.01	3.21	4.38	4.35	4.46	2.45	3.02	0.57	0.882371	1.000000
N	alternative_acceptor		chr16	+	chr16:89804314-89805599;chr16:89804314-89804405;chr16:89804314-89804414	chr16:89804314-89804383		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		100.00	100.00	88.00	100.00	88.24	95.83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	87.50	76.19	100.00	100.00	100.00	91.67	85.71	88.89	95.45	100.00	100.00	100.00	94.44	96.67	85.00	75.00	90.91	100.00	86.60	91.66	5.06	0.959759	0.990505
N	alternative_acceptor	SRSF11	chr1	+	chr1:70716187-70716290;chr1:70716187-70716262	chr1:70716187-70716293		chr1:70716263-70716290;chr1:70716291-70716293	chr1:70716290-70716291;chr1:70716293-70716294		62.86	66.67	63.77	50.00	50.00	NA	52.17	46.34	58.73	46.34	53.57	51.67	64.91	57.14	54.67	48.48	50.00	43.86	NA	62.50	65.00	58.06	63.64	56.25	69.23	48.28	56.14	47.50	54.76	48.57	58.54	60.00	NA	57.89	60.32	59.54	65.79	57.84	-7.95	0.174907	0.660713
N	jcn_only_AA	SPG21	chr15	-	chr15:65257802-65261591	chr15:65261404-65261591		chr15:65257802-65261403	chr15:65257801-65257802		0.00	4.11	0.00	14.29	14.93	NA	0.00	0.00	0.00	3.41	2.16	0.00	0.62	0.00	0.00	1.85	2.69	0.00	0.00	0.00	8.06	0.00	1.19	0.00	0.00	0.00	0.00	7.04	2.33	9.09	0.00	0.00	0.00	2.86	2.21	3.85	0.00	0.00	0.00	0.293591	0.663989
N	alternative_donor	ABR	chr17	-	chr17:910553-912918	chr17:910553-911389		chr17:911390-912918	chr17:912918-912919		2.46	8.70	3.23	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.44	0.64	0.90	0.87	1.35	0.82	0.90	0.65	NA	2.56	NA	2.50	2.54	2.33	15.38	3.23	3.66	2.44	1.59	0.00	3.77	3.80	NA	3.28	2.61	2.13	4.80	2.51	-2.29	0.341385	0.650093
N	alternative_donor	GRAMD1A	chr19	+	chr19:35501530-35502377;chr19:35501284-35502377	chr19:35501560-35502377		chr19:35501284-35501529;chr19:35501530-35501559	chr19:35501283-35501284;chr19:35501529-35501530		3.31	25.93	1.15	14.71	23.53	35.45	4.26	1.14	0.72	1.01	2.63	1.52	2.27	0.65	0.89	1.30	3.28	1.57	30.00	2.67	7.69	2.14	4.35	2.81	22.22	1.36	1.20	2.47	10.53	2.91	6.22	0.92	31.58	2.21	4.29	3.06	24.07	2.02	-22.06	0.023717	0.295391
N	coord_cassette	SAT2	chr17	-	chr17:7529933-7530460	chr17:7529933-7530024;chr17:7530112-7530260;chr17:7530363-7530460		chr17:7530025-7530111;chr17:7530261-7530362			77.78	64.00	100.00	NA	72.22	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	54.17	63.16	78.26	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	60.00	70.59	51.72	69.23	66.67	100.00	82.00	88.89	6.89	0.689124	0.841098
K	jcn_only_AA	SLC52A2	chr8	+	chr8:145583084-145583774	chr8:145583084-145583282		chr8:145583283-145583774	chr8:145583774-145583775		83.33	100.00	100.00	NA	86.67	NA	100.00	95.65	100.00	91.30	90.62	100.00	97.87	93.33	92.00	95.00	91.67	NA	NA	NA	91.67	91.30	93.75	100.00	NA	100.00	88.24	95.24	90.62	94.74	NA	92.31	86.67	96.30	90.48	94.59	98.94	94.49	-4.44	0.544774	0.781053
N	jcn_only_AA	ABCC3,C17orf49,RNASEK-C17orf49	chr17	+	chr17:48765092-48765786;chr17:48765092-48768452	chr17:48765092-48765771		chr17:48765772-48765786;chr17:48765787-48768452	chr17:48765786-48765787;chr17:48768452-48768453		4.17	0.00	3.68	0.00	0.00	6.67	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	3.39	0.00	0.00	3.85	0.00	2.78	3.12	0.00	1.23	0.00	4.08	1.43	1.49	0.00	1.82	0.00	0.00	3.43	3.43	0.077912	0.663989
K	alternative_donor	QRICH1	chr3	-	chr3:49070207-49070552	chr3:49070207-49070331		chr3:49070332-49070552	chr3:49070552-49070553		9.09	7.14	10.42	NA	0.00	NA	6.25	6.90	0.00	2.70	4.35	5.00	5.88	4.00	4.44	2.13	2.04	4.00	0.00	3.45	NA	12.50	9.38	13.64	NA	14.29	13.33	13.33	9.52	0.00	0.00	10.00	NA	9.38	6.90	9.52	6.06	5.45	-0.61	0.588686	0.799662
N	jcn_only_AD	DLD	chr7	+	chr7:107558507-107559454	chr7:107559054-107559454		chr7:107558507-107559053	chr7:107558506-107558507		5.45	0.00	0.00	2.70	0.00	0.00	0.00	4.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	18.45	0.00	0.00	0.00	0.00	4.26	0.00	0.00	0.00	0.00	0.00	0.00	4.45	4.45	0.105614	0.644689
K	intron_retention	PLEKHG2	chr19	+	chr19:39916058-39916181				chr19:39916057-39916058;chr19:39916181-39916182		92.11	100.00	100.00	100.00	100.00	96.55	NA	100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	100.00	96.30	94.00	NA	100.00	NA	92.75	100.00	97.92	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	98.15	-1.85	0.560640	1.000000
N	alternative_donor	FGD2	chr6	+	chr6:36993985-36995204;chr6:36993715-36995204;chr6:36994102-36995204	chr6:36995111-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		8.26	3.12	NA	NA	NA	NA	0.00	2.27	0.00	NA	0.00	7.69	1.69	1.83	1.89	7.69	0.00	7.69	0.00	7.41	NA	NA	0.00	9.68	NA	4.69	NA	12.00	0.00	8.33	3.85	7.14	0.00	6.25	4.76	10.42	0.00	4.27	4.27	0.017249	0.264212
N	alternative_donor	NXF1	chr11	-	chr11:62566048-62567848	chr11:62566048-62566362		chr11:62566363-62567848	chr11:62567848-62567849		70.23	51.61	68.70	40.00	34.38	NA	43.48	53.16	57.58	33.33	35.29	42.42	42.86	63.86	70.37	51.92	38.30	28.33	20.00	59.82	40.91	60.00	52.13	65.15	NA	73.85	66.27	64.41	52.38	57.65	49.41	57.85	30.00	67.21	63.16	72.06	42.86	61.84	18.98	0.008594	0.211749
N	alternative_acceptor	STX4	chr16	+	chr16:31045436-31045524;chr16:31045436-31045493	chr16:31045436-31045546		chr16:31045494-31045524;chr16:31045525-31045546	chr16:31045524-31045525;chr16:31045546-31045547		92.92	92.93	90.60	90.23	93.21	85.96	97.27	95.97	94.74	93.60	94.29	94.67	94.25	95.05	91.11	93.75	95.27	93.07	92.19	95.50	91.89	93.71	92.73	92.64	100.00	93.39	95.18	94.65	94.74	93.38	88.81	91.74	90.54	94.06	93.55	93.20	93.59	94.22	0.63	0.618245	0.854460
K	jcn_only_AD	RNPEPL1	chr2	+	chr2:241514030-241514918	chr2:241514560-241514918					100.00	98.25	97.30	NA	100.00	NA	97.85	100.00	100.00	100.00	98.41	100.00	100.00	100.00	97.14	100.00	98.59	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177483	0.657607
K	intron_retention	SPATA21	chr1	-	chr1:16722808-16723052				chr1:16722807-16722808;chr1:16723052-16723053		88.24	86.67	84.96	80.95	94.12	100.00	83.33	87.84	83.72	88.89	93.94	87.50	79.65	84.48	79.35	100.00	89.58	100.00	100.00	91.03	93.18	90.91	91.14	92.31	81.82	88.06	84.21	90.70	91.23	86.27	88.33	91.03	87.10	87.50	92.21	89.62	85.00	88.15	3.15	0.216048	1.000000
K	intron_retention	UNC13D	chr17	-	chr17:73825065-73826108				chr17:73825064-73825065;chr17:73826108-73826109		4.08	0.00	7.79	0.00	2.70	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	2.38	0.00	0.00	NA	0.00	3.23	2.82	NA	2.27	0.00	0.00	0.00	3.95	0.00	8.00	7.69	1.49	2.22	1.89	0.00	3.03	0.00	0.00	0.74	0.74	0.559018	1.000000
N	cassette	PSMA3	chr14	+	chr14:58724717-58730422	chr14:58724717-58727686;chr14:58727739-58730422		chr14:58727687-58727738			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	97.40	100.00	100.00	100.00	100.00	92.11	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	0.00	0.303406	0.709176
K	cassette	MKNK1	chr1	-	chr1:47037840-47042246	chr1:47037840-47040618;chr1:47040693-47042246		chr1:47040619-47040692			95.08	100.00	89.66	NA	100.00	100.00	97.52	95.65	100.00	100.00	100.00	100.00	96.94	98.73	92.31	100.00	96.83	100.00	100.00	87.27	92.86	91.30	98.63	92.59	100.00	95.12	92.16	100.00	100.00	100.00	78.57	78.57	100.00	90.24	88.16	82.50	100.00	95.10	-4.90	0.061344	0.618828
K	intron_retention		chr17	+	chr17:43311568-43313502				chr17:43311567-43311568;chr17:43313502-43313503		8.57	27.14	13.11	NA	45.45	NA	0.00	1.61	1.14	2.17	0.59	0.00	1.61	1.60	4.55	1.15	1.14	0.00	66.67	4.65	43.33	9.68	12.31	4.35	50.00	9.23	13.38	6.00	13.70	8.33	12.70	10.50	65.71	8.24	7.30	7.23	38.57	6.61	-31.96	0.523789	1.000000
K	intron_retention	IER3	chr6	-	chr6:30711974-30712085				chr6:30711973-30711974;chr6:30712085-30712086		17.81	21.43	11.81	5.92	8.83	6.38	0.00	0.66	0.81	1.13	1.30	0.85	1.25	1.47	2.09	0.82	2.84	0.85	16.67	18.18	18.15	12.81	12.36	11.67	16.92	8.50	7.46	5.25	7.67	4.27	41.19	30.51	51.16	13.67	18.63	10.20	16.80	13.15	-3.64	0.940121	1.000000
K	jcn_only_AD	NDUFA3	chr19	+	chr19:54606268-54606421;chr19:54606207-54606421	chr19:54606197-54606421		chr19:54606197-54606206;chr19:54606207-54606267	chr19:54606196-54606197;chr19:54606206-54606207		100.00	97.95	94.92	100.00	98.77	99.26	98.26	100.00	95.35	98.08	100.00	97.83	100.00	95.45	97.50	100.00	99.34	98.44	98.05	100.00	97.21	100.00	98.35	96.30	100.00	92.00	98.41	97.92	100.00	98.72	95.24	94.90	96.39	100.00	100.00	100.00	98.16	97.72	-0.43	0.405543	0.670566
K	intron_retention	WIPI1	chr17	-	chr17:66422317-66423275				chr17:66422316-66422317;chr17:66423275-66423276		3.33	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	9.09	0.00	0.00	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.343814	1.000000
K	intron_retention	CIZ1	chr9	-	chr9:130929444-130931330				chr9:130929443-130929444;chr9:130931330-130931331		9.38	11.11	7.55	12.50	8.96	13.64	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	1.89	0.00	6.12	6.25	3.64	5.26	5.41	5.00	10.42	2.63	3.66	5.41	0.00	4.44	5.45	8.11	9.09	6.06	5.43	0.00	-5.43	0.480302	1.000000
K	intron_retention	SRSF7	chr2	-	chr2:38973890-38975197				chr2:38973889-38973890;chr2:38975197-38975198		28.57	34.48	50.00	NA	38.71	NA	NA	30.00	NA	18.18	37.50	NA	36.84	NA	41.67	30.00	33.33	NA	25.00	35.29	NA	46.15	42.86	40.00	22.22	41.67	54.55	36.36	44.00	NA	45.00	46.67	38.89	42.86	43.59	53.85	34.48	35.29	0.81	0.296530	1.000000
N	cassette	SMAP2	chr1	+	chr1:40810583-40874324;chr1:40839896-40874324;chr1:40828109-40874324	chr1:40828109-40872407,chr1:40810583-40872407,chr1:40839896-40872407;chr1:40872542-40874324		chr1:40872408-40872541			100.00	100.00	100.00	NA	NA	100.00	100.00	97.34	99.54	100.00	100.00	100.00	100.00	99.56	98.94	98.86	100.00	99.63	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.86	98.33	100.00	100.00	100.00	100.00	95.28	93.33	98.86	100.00	100.00	100.00	99.78	-0.22	0.673849	0.882035
K	intron_retention	ILK	chr11	+	chr11:6625591-6629275				chr11:6625590-6625591;chr11:6629275-6629276		5.13	10.00	8.54	NA	0.00	NA	0.83	0.00	0.00	0.00	0.66	0.00	1.88	0.00	3.23	0.00	0.61	0.00	9.09	4.17	0.00	7.14	5.43	6.45	NA	2.94	6.74	2.38	1.27	3.45	2.04	4.05	NA	3.77	6.94	5.80	5.48	2.49	-2.99	0.394681	1.000000
K	intron_retention	HNRNPA2B1	chr7	-	chr7:26237487-26240191				chr7:26237486-26237487;chr7:26240191-26240192		1.30	0.00	7.41	0.00	0.00	NA	0.00	2.68	0.00	1.32	0.00	0.00	0.64	2.78	4.17	1.02	1.14	0.00	NA	3.49	0.00	1.49	1.35	2.83	33.33	8.20	5.71	1.32	0.00	3.77	2.44	3.95	NA	6.52	4.35	3.92	0.32	2.73	2.41	0.528315	1.000000
K	intron_retention	CTD-2636A23.2	chr5	+	chr5:43289768-43290569				chr5:43289767-43289768;chr5:43290569-43290570		89.47	80.77	88.89	70.00	72.00	72.22	85.71	92.31	88.17	76.00	87.80	79.72	90.70	100.00	88.70	87.27	68.75	74.48	57.58	93.33	56.25	73.58	76.67	77.14	NA	84.85	86.21	81.48	79.31	74.32	65.38	81.58	64.71	88.71	81.82	82.05	80.77	90.89	10.12	0.624370	1.000000
N	jcn_only_AA	RP11-65B7.2	chr13	+	chr13:44463119-44464139;chr13:44463119-44464260;chr13:44463119-44464283	chr13:44463119-44464249		chr13:44464140-44464249;chr13:44464250-44464260;chr13:44464261-44464283	chr13:44464249-44464250;chr13:44464260-44464261;chr13:44464283-44464284		98.04	100.00	98.08	NA	100.00	NA	100.00	100.00	100.00	100.00	99.35	100.00	99.57	100.00	100.00	100.00	99.01	100.00	NA	95.74	NA	95.45	99.10	100.00	NA	100.00	100.00	100.00	100.00	NA	95.24	94.12	100.00	97.33	97.35	100.00	100.00	99.02	-0.98	0.115671	0.663989
K	jcn_only_AD	ZSWIM8	chr10	+	chr10:75559929-75560053	chr10:75559953-75560053		chr10:75559929-75559952	chr10:75559928-75559929		11.69	25.93	16.67	19.23	28.85	30.00	35.29	23.81	20.83	21.43	28.57	35.71	36.84	31.03	16.67	30.77	20.83	27.78	18.18	18.06	24.00	22.73	24.66	19.15	26.67	22.03	18.52	22.22	32.61	23.53	21.18	18.75	28.12	28.92	23.17	25.96	27.40	21.61	-5.79	0.088387	0.632469
N	cassette	CDC5L	chr6	+	chr6:44394462-44413391	chr6:44394462-44397449;chr6:44397648-44413391		chr6:44397450-44397647			100.00	100.00	98.46	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.50	100.00	94.12	96.00	100.00	96.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.73	100.00	100.00	100.00	94.59	97.56	95.38	100.00	100.00	100.00	100.00	100.00	98.87	-1.13	0.121840	0.709176
K	intron_retention	PLXNB2	chr22	-	chr22:50724528-50724601				chr22:50724527-50724528;chr22:50724601-50724602		3.90	13.11	3.95	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	7.69	1.85	0.00	0.00	4.35	0.00	24.68	1.61	4.71	0.00	6.45	NA	17.65	6.80	10.53	0.00	3.49	2.17	9.11	1.73	-7.38	0.595238	1.000000
N	alternative_acceptor	LAMB2	chr3	-	chr3:49159288-49159376	chr3:49159294-49159376		chr3:49159288-49159293	chr3:49159287-49159288		73.33	78.57	86.67	86.67	81.25	85.19	91.67	NA	NA	NA	100.00	NA	95.45	NA	100.00	NA	100.00	100.00	75.00	64.29	84.62	NA	76.00	NA	82.05	92.31	75.86	88.89	86.49	90.91	72.73	80.00	72.97	NA	80.00	72.73	80.31	73.03	-7.28	0.362801	0.709013
K	intron_retention	OTUB1	chr11	+	chr11:63764121-63764542				chr11:63764120-63764121;chr11:63764542-63764543		94.74	100.00	96.30	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	90.91	100.00	NA	90.00	NA	84.21	100.00	100.00	92.86	100.00	100.00	100.00	94.74	100.00	NA	100.00	92.86	100.00	91.43	100.00	100.00	100.00	100.00	100.00	97.37	-2.63	0.992329	1.000000
K	alternative_acceptor	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481235-7481418;chr17:7481235-7481437;chr17:7481235-7481482	chr17:7481235-7481544		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		7.21	8.17	9.62	5.23	6.86	7.62	0.00	0.00	2.59	2.31	2.07	1.26	2.78	1.41	1.37	3.68	1.62	1.63	19.81	14.32	11.48	7.67	7.99	6.81	10.58	5.00	4.44	4.76	7.18	6.58	15.72	16.87	19.28	6.22	6.04	5.16	9.38	6.11	-3.27	0.525379	0.808638
N	alternative_donor	CYTH4	chr22	+	chr22:37706074-37707028;chr22:37705365-37707028	chr22:37706861-37707028		chr22:37705365-37706073;chr22:37706074-37706860	chr22:37705364-37705365;chr22:37706073-37706074		2.15	3.53	4.50	NA	2.22	NA	0.58	0.61	0.83	0.83	0.56	0.39	1.30	0.53	1.52	2.70	0.98	0.00	9.52	1.62	2.44	2.22	3.36	2.54	9.80	1.83	3.04	3.68	1.94	2.44	1.01	2.28	10.00	3.51	3.03	3.57	6.52	1.31	-5.21	0.056945	0.421157
N	alternative_acceptor	ELL2	chr5	-	chr5:95226112-95226806;chr5:95224835-95226806	chr5:95225973-95226806		chr5:95224835-95225972;chr5:95225973-95226111	chr5:95224834-95224835;chr5:95225972-95225973		2.61	6.25	2.24	3.57	3.33	1.56	0.00	0.84	0.00	0.58	1.10	0.61	2.27	0.00	0.44	0.43	1.50	0.88	NA	6.72	1.89	10.31	9.00	2.44	0.00	5.23	7.34	1.47	4.08	2.47	5.56	9.14	0.00	9.17	9.56	11.03	0.00	3.92	3.92	0.309048	0.709013
N	alternative_donor	ELOVL1	chr1	-	chr1:43830132-43830228;chr1:43830132-43830285;chr1:43830132-43830289	chr1:43830132-43830212		chr1:43830213-43830228;chr1:43830229-43830285;chr1:43830286-43830289	chr1:43830228-43830229;chr1:43830285-43830286;chr1:43830289-43830290		100.00	100.00	95.45	NA	92.59	NA	82.98	100.00	88.57	100.00	79.41	NA	80.00	90.62	100.00	84.44	71.05	NA	NA	100.00	91.30	90.48	84.48	100.00	NA	100.00	100.00	90.48	100.00	100.00	88.89	83.72	61.54	94.29	97.83	100.00	81.49	100.00	18.51	0.142545	0.558614
K	coord_cassette	FNBP1	chr9	-	chr9:132671279-132687238	chr9:132671279-132678244;chr9:132678260-132686122;chr9:132686219-132687238		chr9:132678245-132678259;chr9:132686123-132686218			4.76	6.67	2.63	NA	0.00	NA	3.09	10.26	1.19	1.08	0.00	4.79	2.65	7.41	0.74	0.00	1.22	1.59	0.00	0.00	0.00	0.00	4.17	2.86	NA	0.00	0.00	10.00	7.14	6.25	0.00	0.00	9.09	0.00	0.00	2.47	3.09	2.38	-0.71	0.821731	0.930773
N	alternative_acceptor	TUBB4B	chr9	+	chr9:140136474-140136952;chr9:140136474-140136947	chr9:140136474-140136931		chr9:140136932-140136947;chr9:140136948-140136952	chr9:140136947-140136948;chr9:140136952-140136953		5.62	3.12	4.41	3.12	1.82	4.17	0.00	0.00	1.33	0.76	0.68	1.25	0.56	0.00	1.04	0.82	0.00	1.45	6.25	3.16	6.00	5.33	0.85	2.60	NA	1.49	1.69	0.00	1.54	5.13	12.12	12.75	10.26	4.35	3.45	2.68	3.12	2.33	-0.79	0.911734	0.972901
N	alternative_donor	CIRBP	chr19	+	chr19:1271467-1271549;chr19:1271389-1271549	chr19:1271365-1271549		chr19:1271365-1271388;chr19:1271389-1271466	chr19:1271364-1271365;chr19:1271388-1271389		20.00	25.00	18.18	NA	25.00	NA	27.27	25.00	33.33	26.67	37.04	27.27	35.29	17.65	22.22	23.53	25.81	NA	25.00	35.71	51.85	18.75	22.22	41.18	15.38	28.57	31.25	28.57	31.58	27.27	31.37	31.11	41.38	7.69	43.75	13.33	26.13	26.79	0.65	0.700995	0.872310
K	jcn_only_AA	BLOC1S2	chr10	-	chr10:102045971-102046361	chr10:102046090-102046361		chr10:102045971-102046089	chr10:102045970-102045971		6.56	0.00	0.00	0.00	2.56	NA	2.38	2.30	0.00	0.00	2.54	0.00	0.00	2.94	2.88	2.35	3.60	2.56	0.00	1.28	0.00	1.41	0.74	0.00	0.00	2.70	0.00	1.54	0.94	0.00	1.98	2.24	0.00	0.00	1.89	0.00	0.00	2.50	2.50	0.018379	0.537091
N	jcn_only_AA	ZNF276	chr16	+	chr16:89800447-89804213	chr16:89800447-89804128		chr16:89804129-89804213	chr16:89804213-89804214		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	0.00	6.25	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	jcn_only_AD	CCHCR1	chr6	-	chr6:31112851-31112964	chr6:31112851-31112942		chr6:31112943-31112964	chr6:31112964-31112965		100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	93.33	NA	100.00	NA	100.00	100.00	89.66	NA	NA	NA	88.24	88.89	95.83	NA	NA	NA	100.00	100.00	0.00	0.533844	0.757311
K	intron_retention	CSNK1A1	chr5	-	chr5:148876424-148885045				chr5:148876423-148876424;chr5:148885045-148885046		16.39	28.57	25.97	17.39	18.92	14.29	12.73	12.99	12.94	23.53	25.84	20.31	11.11	15.94	19.48	22.06	27.16	21.95	13.33	17.78	19.23	25.71	13.64	22.64	NA	16.90	21.54	31.43	20.97	17.95	20.00	33.33	0.00	20.73	23.75	22.50	12.73	16.64	3.91	0.621127	1.000000
N	alternative_acceptor	ADA	chr20	-	chr20:43248489-43248939;chr20:43248587-43248939	chr20:43248842-43248939		chr20:43248489-43248586;chr20:43248587-43248841	chr20:43248488-43248489;chr20:43248586-43248587		3.03	1.95	4.49	1.86	2.63	0.75	0.00	0.00	0.00	0.75	1.06	0.81	0.00	0.00	0.00	0.45	0.00	0.91	2.47	3.28	2.97	2.24	2.13	3.07	1.90	1.98	1.98	1.21	1.34	0.39	2.82	6.93	2.38	2.33	2.24	1.34	1.92	2.40	0.48	0.614199	0.853734
K	jcn_only_AD	MVB12A	chr19	+	chr19:17534877-17535739	chr19:17535487-17535739					82.14	93.02	86.36	NA	91.67	84.21	100.00	100.00	94.12	100.00	96.88	100.00	100.00	100.00	100.00	94.74	100.00	100.00	94.12	90.48	94.12	NA	100.00	NA	93.18	96.00	92.31	NA	100.00	87.50	90.48	81.82	88.24	81.82	95.00	91.67	93.65	93.24	-0.41	0.651482	0.819306
K	alternative_first_exon	ARHGAP27	chr17	-	chr17:43483450-43502929;chr17:43483450-43487597	chr17:43483450-43506988	chr17:43502930-43502997;chr17:43487598-43487790	chr17:43506989-43507663			70.97	43.48	40.00	NA	NA	NA	50.00	93.10	81.82	NA	58.33	100.00	44.44	92.68	75.00	72.73	45.71	96.55	NA	83.33	NA	NA	71.43	81.82	64.29	93.02	25.00	NA	NA	NA	NA	54.55	NA	NA	NA	95.83	47.22	92.68	45.46	0.001023	0.016459
K	cassette	SSR1	chr6	-	chr6:7290165-7295624	chr6:7290165-7295320;chr6:7295336-7295624		chr6:7295321-7295335			0.00	6.19	1.02	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.80	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	1.19	0.00	0.00	1.20	0.00	2.15	1.35	0.00	0.00	0.00	1.79	1.37	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.475995	0.770451
K	intron_retention		chr20	-	chr20:33594379-33595352				chr20:33594378-33594379;chr20:33595352-33595353		3.73	0.00	7.83	0.00	0.00	NA	1.28	1.06	0.65	0.00	0.00	0.00	1.23	0.54	2.22	0.00	0.00	0.00	NA	1.97	0.00	5.00	4.84	3.03	0.00	5.42	1.75	0.00	8.89	1.92	2.22	4.59	0.00	3.95	6.49	4.35	0.00	2.10	2.10	0.118754	1.000000
N	jcn_only_AA	UBAP2L	chr1	+	chr1:154239045-154241296;chr1:154239045-154241235;chr1:154239045-154245128	chr1:154239045-154241232		chr1:154241233-154241235;chr1:154241236-154241296;chr1:154241297-154245128	chr1:154241235-154241236;chr1:154241296-154241297;chr1:154245128-154245129		80.85	76.19	85.07	81.25	80.95	NA	75.00	59.26	73.33	62.16	69.77	68.57	74.14	66.67	70.37	65.71	69.39	60.00	92.31	82.35	85.00	84.62	81.25	71.15	45.45	77.50	80.95	69.57	70.45	63.33	80.56	76.71	91.30	75.86	73.47	85.26	75.59	79.03	3.44	0.883317	0.956748
N	cassette	MGAT1	chr5	-	chr5:180220098-180230601;chr5:180220098-180229679;chr5:180220098-180242424;chr5:180220098-180242413;chr5:180220098-180235501;chr5:180220098-180235647	chr5:180220098-180222655;chr5:180222876-180230601,chr5:180222876-180235501,chr5:180222876-180235647,chr5:180222876-180242413,chr5:180222876-180242424,chr5:180222876-180229679		chr5:180222656-180222875			3.29	5.06	2.25	41.18	20.00	80.49	1.22	2.82	2.18	8.81	3.91	13.37	1.81	2.22	1.94	8.18	6.25	12.00	27.27	3.50	16.67	8.05	4.47	10.88	14.49	4.30	2.94	9.76	7.49	21.28	8.19	5.96	28.95	7.65	3.72	9.43	9.78	3.40	-6.38	0.137776	0.709176
N	jcn_only_AA		chr5	.	chr5:176943449-176943725;chr5:176943514-176943725;chr5:176943485-176943725	chr5:176943518-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		2.63	0.00	6.25	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.00	3.45	0.00	0.00	0.00	0.00	4.17	0.00	0.00	4.65	7.14	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	NA	10.53	0.00	3.03	0.00	1.31	1.31	0.219903	0.663989
K	intron_retention	DENND3	chr8	+	chr8:142200517-142202429				chr8:142200516-142200517;chr8:142202429-142202430		2.86	0.00	2.47	0.00	NA	1.85	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	NA	7.14	0.00	0.00	3.70	5.36	6.67	NA	1.61	0.00	2.33	5.56	16.67	NA	6.58	0.00	0.00	0.00	0.799210	1.000000
K	intron_retention	GPKOW	chrX	-	chrX:48970694-48970790				chrX:48970693-48970694;chrX:48970790-48970791		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	9.38	3.85	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.735434	1.000000
N	alternative_acceptor	LIMK2,TRABD	chr22	+	chr22:50635781-50635877	chr22:50635781-50635865		chr22:50635866-50635877	chr22:50635877-50635878		4.17	0.00	5.88	NA	0.00	NA	3.57	0.00	3.33	5.88	0.00	NA	0.00	0.00	0.00	2.56	0.00	NA	0.00	0.00	0.00	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.364841	0.709013
K	intron_retention	GPATCH3	chr1	-	chr1:27219030-27219160				chr1:27219029-27219030;chr1:27219160-27219161		0.00	3.12	14.81	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	5.88	5.56	4.55	0.00	0.00	5.00	0.00	5.00	3.85	5.00	11.76	12.00	5.88	16.67	11.54	0.00	0.00	0.00	0.993533	1.000000
K	intron_retention	NDST2	chr10	-	chr10:75562335-75562431				chr10:75562334-75562335;chr10:75562431-75562432		5.48	4.35	7.02	5.56	3.92	4.76	0.00	0.00	0.90	0.00	0.00	0.00	0.00	3.45	6.17	0.00	1.43	0.00	5.71	9.38	6.58	8.33	5.26	7.86	0.00	2.70	5.49	3.12	5.68	3.40	2.94	9.02	5.13	6.25	5.88	4.96	2.17	3.20	1.02	0.674665	1.000000
K	alternative_acceptor	CNBP	chr3	-	chr3:128890121-128890288;chr3:128890153-128890288;chr3:128890127-128890288	chr3:128890124-128890288		chr3:128890121-128890123;chr3:128890124-128890126;chr3:128890127-128890152	chr3:128890120-128890121;chr3:128890123-128890124;chr3:128890126-128890127		19.01	11.84	18.05	23.81	24.39	NA	13.50	13.79	14.39	15.70	17.82	13.89	15.14	14.38	14.29	16.58	15.89	15.00	25.00	17.76	17.81	14.88	20.72	20.55	NA	16.39	15.51	13.27	15.10	17.65	21.11	17.10	15.79	20.29	18.52	21.09	15.14	17.08	1.94	0.759857	0.910949
N	jcn_only_AA	SKAP2	chr7	-	chr7:26709276-26709709;chr7:26708724-26709709;chr7:26709335-26709709	chr7:26708719-26709709		chr7:26708719-26708723;chr7:26708724-26709275;chr7:26709276-26709334	chr7:26708718-26708719;chr7:26708723-26708724;chr7:26709275-26709276		3.57	NA	0.00	NA	NA	NA	0.00	5.41	0.00	0.00	0.00	0.00	1.16	0.00	12.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.33	NA	0.00	3.23	NA	0.00	NA	NA	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.261521	0.663989
K	intron_retention	CTD-3149D2.4	chr19	-	chr19:17844069-17845250				chr19:17844068-17844069;chr19:17845250-17845251		100.00	98.70	100.00	100.00	99.13	100.00	100.00	96.43	90.91	100.00	92.59	NA	100.00	100.00	92.86	91.67	100.00	NA	100.00	96.77	100.00	92.31	98.80	NA	100.00	100.00	97.78	100.00	97.83	100.00	100.00	96.88	100.00	100.00	96.30	100.00	100.00	100.00	0.00	0.464912	1.000000
N	jcn_only_AA	GMPR2	chr14	+	chr14:24706769-24707832;chr14:24706769-24707457;chr14:24706769-24707451	chr14:24706769-24707794		chr14:24707452-24707457;chr14:24707458-24707794;chr14:24707795-24707832	chr14:24707457-24707458;chr14:24707794-24707795;chr14:24707832-24707833		3.03	0.00	0.00	NA	7.69	NA	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.92	0.00	4.55	4.29	4.55	12.50	3.85	3.12	NA	5.88	0.00	0.00	0.00	1.85	0.00	2.38	0.00	5.26	5.00	5.00	0.00	8.11	8.33	0.00	2.47	2.47	0.912385	0.969382
K	intron_retention		chr16	+	chr16:29821549-29822326				chr16:29821548-29821549;chr16:29822326-29822327		96.97	96.08	94.44	96.23	97.59	91.89	95.24	100.00	100.00	90.77	96.55	100.00	96.36	NA	100.00	100.00	95.07	100.00	92.35	100.00	100.00	92.11	98.54	100.00	94.17	100.00	100.00	100.00	98.08	100.00	100.00	93.75	91.86	97.78	100.00	100.00	94.70	100.00	5.30	0.023895	1.000000
N	cassette	PSTPIP1	chr15	+	chr15:77327905-77329385	chr15:77327905-77328151;chr15:77328277-77329385		chr15:77328152-77328276			91.67	94.72	100.00	100.00	97.53	91.53	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	98.89	100.00	98.20	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	84.62	97.37	95.89	100.00	94.29	94.74	99.44	95.84	-3.61	0.346985	0.709176
K	alternative_donor	CC2D1B,RAB13	chr1	-	chr1:52818896-52819274	chr1:52818896-52819189		chr1:52819190-52819274	chr1:52819274-52819275		74.36	90.70	90.00	85.71	86.49	83.87	100.00	88.46	100.00	91.67	100.00	100.00	100.00	100.00	91.30	81.25	100.00	NA	80.56	77.55	83.78	80.77	82.76	77.78	100.00	91.49	94.87	100.00	85.71	83.33	69.33	74.29	66.67	78.79	81.08	87.93	95.35	83.00	-12.34	0.423721	0.685712
K	cassette	BID	chr22	-	chr22:18222255-18257146;chr22:18222255-18232870	chr22:18222255-18226568;chr22:18226780-18257146,chr22:18226780-18232870		chr22:18226569-18226779			79.66	81.69	75.00	90.82	94.38	90.00	93.58	95.29	96.47	96.37	96.92	97.37	93.39	96.77	91.84	96.65	97.48	95.97	96.15	88.89	89.58	93.79	89.81	94.50	58.62	82.67	77.53	93.30	94.51	94.68	77.08	80.56	80.65	94.86	95.22	94.15	87.54	85.78	-1.76	0.693870	0.887136
N	cassette	MS4A7	chr11	+	chr11:60150762-60162418;chr11:60150762-60154189;chr11:60150762-60156862	chr11:60150762-60152560;chr11:60152696-60156862,chr11:60152696-60154189,chr11:60152696-60162418		chr11:60152561-60152695			44.29	40.28	30.48	58.82	27.27	56.25	58.75	82.69	69.57	80.77	61.30	81.25	86.30	99.02	100.00	87.13	85.89	94.44	32.61	64.85	60.87	66.67	47.70	76.70	29.41	52.24	38.18	47.73	33.10	69.70	34.97	17.86	32.26	27.48	25.77	46.39	36.45	58.55	22.10	0.249606	0.709176
N	alternative_acceptor	ADAMTSL4	chr1	+	chr1:150530626-150530712;chr1:150530626-150530948	chr1:150530626-150530732		chr1:150530713-150530732;chr1:150530733-150530948	chr1:150530732-150530733;chr1:150530948-150530949		8.57	6.82	10.71	0.00	6.45	5.26	0.00	3.45	0.00	0.00	0.00	NA	6.67	5.00	3.57	NA	0.00	NA	5.26	12.50	7.69	NA	0.00	NA	4.44	8.00	9.09	5.88	3.85	NA	NA	6.67	9.52	NA	7.69	5.00	5.96	8.00	2.04	0.341842	0.709013
K	alternative_acceptor	SP110	chr2	-	chr2:231067439-231072705	chr2:231067445-231072705		chr2:231067439-231067444	chr2:231067438-231067439		92.94	100.00	100.00	NA	NA	87.23	100.00	100.00	91.53	NA	NA	86.36	100.00	100.00	97.47	100.00	NA	100.00	NA	91.07	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	91.45	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	0.00	0.178318	0.660713
K	alternative_donor	PER1,SAT2	chr17	-	chr17:7529933-7530070	chr17:7529933-7530024		chr17:7530025-7530070	chr17:7530070-7530071		4.61	6.15	8.70	4.76	4.83	2.83	2.04	1.61	0.00	0.00	0.00	4.55	4.65	1.71	1.79	2.13	0.00	0.00	4.28	3.88	5.56	7.89	4.07	4.00	3.52	5.71	7.32	5.80	2.24	5.45	9.48	8.74	6.55	4.11	3.75	3.90	4.46	4.25	-0.22	0.982206	0.994374
K	intron_retention		chr11	+	chr11:67810331-67810412				chr11:67810330-67810331;chr11:67810412-67810413		4.93	4.35	7.25	0.00	6.90	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.40	0.93	0.00	0.00	0.00	0.00	2.66	0.00	0.00	5.71	2.04	11.11	3.74	3.79	0.00	2.99	0.00	5.00	8.47	0.00	4.11	7.45	2.38	0.00	3.20	3.20	0.580019	1.000000
N	jcn_only_AA	C7orf50	chr7	-	chr7:1066664-1067893;chr7:1049937-1067893;chr7:1061228-1067893;chr7:1049942-1067893	chr7:1049780-1067893		chr7:1049780-1049936;chr7:1049937-1049941;chr7:1049942-1061227;chr7:1061228-1066663	chr7:1049779-1049780;chr7:1049936-1049937;chr7:1049941-1049942;chr7:1061227-1061228		100.00	100.00	93.33	93.33	100.00	100.00	92.31	89.74	92.31	100.00	91.35	100.00	94.83	96.00	87.50	100.00	96.15	100.00	98.48	94.44	97.06	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	98.16	98.00	-0.16	0.802140	0.916026
K	intron_retention	MYO9B	chr19	+	chr19:17317594-17317921				chr19:17317593-17317594;chr19:17317921-17317922		3.91	4.55	4.41	3.26	3.98	0.00	0.00	0.00	0.86	0.00	0.73	0.00	0.45	0.00	1.33	0.41	0.61	0.00	4.55	2.60	3.64	3.65	5.53	1.94	11.11	2.93	4.26	2.01	2.27	0.77	3.62	5.59	9.09	3.14	2.52	1.73	4.55	2.77	-1.78	0.413841	1.000000
N	jcn_only_AD	CSNK1A1	chr5	-	chr5:148876424-148884243;chr5:148876424-148878532;chr5:148876424-148885045	chr5:148876424-148885009		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		50.94	51.61	53.08	48.65	51.39	46.15	52.48	52.48	55.15	54.90	56.41	54.05	48.23	54.26	51.18	61.70	58.00	63.64	39.13	49.40	51.11	59.72	43.64	42.68	70.00	46.55	52.21	58.73	48.57	52.94	60.71	57.75	33.33	50.00	45.83	48.41	49.92	51.71	1.79	0.576389	0.789094
K	intron_retention	CXXC5	chr5	+	chr5:139062739-139062970				chr5:139062738-139062739;chr5:139062970-139062971		100.00	100.00	100.00	100.00	95.80	100.00	97.62	100.00	100.00	97.75	97.74	100.00	100.00	NA	100.00	96.59	97.73	100.00	100.00	100.00	100.00	100.00	95.41	NA	100.00	100.00	98.59	93.75	100.00	100.00	100.00	95.74	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.368202	1.000000
K	intron_retention		chr17	+	chr17:73230884-73231194				chr17:73230883-73230884;chr17:73231194-73231195		17.39	15.23	13.95	9.68	11.58	6.52	0.00	NA	0.00	0.00	2.63	NA	0.00	0.00	0.00	0.00	0.00	NA	7.88	16.67	9.80	6.25	11.69	NA	5.73	NA	20.00	13.64	8.82	10.00	21.43	10.71	10.61	8.00	14.29	18.18	6.80	17.03	10.23	0.422723	1.000000
N	alternative_donor	LAMB2	chr3	-	chr3:49159804-49160136;chr3:49159804-49160617	chr3:49159804-49160157		chr3:49160137-49160157;chr3:49160158-49160617	chr3:49160157-49160158;chr3:49160617-49160618		6.25	0.00	5.56	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	NA	7.69	0.00	NA	6.25	0.00	0.00	5.40	5.40	0.087126	0.475124
K	intron_retention	NFYC	chr1	+	chr1:41235088-41236380				chr1:41235087-41235088;chr1:41236380-41236381		6.25	5.88	11.90	8.70	7.02	0.00	4.65	14.29	3.33	11.54	11.43	10.34	7.02	12.00	9.09	12.96	7.32	8.00	3.23	9.68	8.11	20.00	7.04	8.33	0.00	9.09	4.26	13.79	9.72	10.81	11.90	6.82	7.50	8.16	7.41	10.53	5.27	10.79	5.52	0.366935	1.000000
N	cassette	COL23A1	chr5	-	chr5:177677107-177681949	chr5:177677107-177679544;chr5:177679599-177681949		chr5:177679545-177679598			94.44	100.00	NA	NA	100.00	NA	95.24	NA	NA	100.00	100.00	95.24	97.40	NA	NA	100.00	98.25	90.00	88.24	100.00	NA	100.00	95.45	88.00	100.00	80.00	100.00	100.00	97.73	100.00	86.67	NA	100.00	100.00	95.83	96.77	98.70	90.56	-8.14	0.240518	0.709176
K	intron_retention	RABGGTA	chr14	-	chr14:24735724-24735981				chr14:24735723-24735724;chr14:24735981-24735982		13.33	20.00	7.14	18.52	16.67	18.92	0.00	2.27	0.00	3.45	5.13	4.35	6.06	6.98	2.63	0.00	0.00	0.00	18.87	12.00	13.04	7.14	13.04	0.00	15.19	13.33	5.56	14.29	8.33	16.00	13.33	13.95	10.96	14.29	10.00	20.00	13.07	12.66	-0.41	0.994489	1.000000
K	alternative_acceptor	EIF2B4	chr2	-	chr2:27590069-27590323	chr2:27590163-27590323		chr2:27590069-27590162	chr2:27590068-27590069		3.70	8.57	11.36	17.65	12.12	0.00	0.00	0.00	3.12	3.23	2.38	0.00	4.55	0.00	3.45	3.57	4.00	NA	13.04	5.88	6.25	8.33	7.69	15.79	0.00	9.09	15.00	5.26	9.09	8.70	5.88	9.38	5.88	10.71	11.76	12.90	5.21	4.79	-0.42	0.634055	0.860722
N	alternative_donor	DDX54,RECQL	chr12	-	chr12:21623281-21623902	chr12:21623281-21623736		chr12:21623737-21623902	chr12:21623902-21623903		10.53	30.00	23.81	26.67	25.93	11.11	4.88	12.12	12.12	8.11	6.33	2.50	6.00	8.00	9.38	9.38	4.23	2.27	29.41	12.50	12.90	8.70	14.04	3.23	5.26	13.33	34.38	7.69	14.71	6.25	11.54	10.20	25.00	12.20	10.20	4.00	15.50	11.83	-3.67	0.342660	0.650093
K	intron_retention	SLC25A39	chr17	-	chr17:42397645-42397722				chr17:42397644-42397645;chr17:42397722-42397723		6.52	1.93	2.59	1.39	6.40	3.08	0.58	3.45	4.26	0.00	1.49	0.00	1.16	3.57	4.00	1.67	1.34	0.00	4.96	0.00	5.59	5.56	8.04	2.50	2.31	9.09	3.16	3.92	5.37	5.26	12.90	5.81	5.14	1.25	2.44	0.00	2.12	5.04	2.92	0.403366	1.000000
K	intron_retention	NFKBIB	chr19	+	chr19:39397950-39398038				chr19:39397949-39397950;chr19:39398038-39398039		2.04	3.92	3.17	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	2.94	2.44	1.85	0.00	0.00	0.00	2.22	0.00	0.00	0.00	10.53	5.00	4.88	0.00	0.00	1.22	0.00	1.02	1.02	0.775846	1.000000
K	alternative_acceptor	IGSF8	chr1	-	chr1:160061399-160061597	chr1:160061422-160061597		chr1:160061399-160061421	chr1:160061398-160061399		3.70	12.00	4.65	11.11	5.88	7.69	0.00	3.85	5.43	2.44	4.55	6.67	0.00	5.41	4.92	8.82	9.09	5.13	5.41	11.11	5.97	10.00	5.88	4.55	0.00	7.32	2.86	10.53	12.50	11.48	6.25	0.00	5.00	0.00	NA	6.67	2.50	5.83	3.33	0.292688	0.709013
N	cassette	ATG16L2	chr11	+	chr11:72537289-72538232;chr11:72537289-72539403;chr11:72537289-72537747	chr11:72537289-72537562;chr11:72537635-72538232,chr11:72537635-72539403,chr11:72537635-72537747		chr11:72537563-72537634			100.00	89.19	94.00	NA	85.29	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	92.86	78.95	81.25	NA	88.57	NA	77.78	100.00	95.24	NA	100.00	NA	78.57	83.33	79.55	88.89	100.00	80.00	91.03	89.47	-1.55	0.946048	0.986526
K	cassette	ARHGEF1	chr19	+	chr19:42410178-42410854	chr19:42410178-42410608;chr19:42410773-42410854		chr19:42410609-42410772			79.79	86.41	77.53	87.88	79.00	83.78	95.00	93.33	85.29	100.00	92.50	92.31	94.92	91.67	79.59	100.00	86.79	100.00	78.06	75.38	83.33	86.21	75.27	74.07	81.76	87.88	82.76	96.43	94.12	91.30	77.94	69.47	78.57	75.00	80.30	79.66	84.09	83.84	-0.25	0.748729	0.919304
K	jcn_only_AA	HDAC5	chr17	-	chr17:42188169-42194861	chr17:42188172-42194861		chr17:42188169-42188171	chr17:42188168-42188169		57.14	73.33	57.58	NA	NA	NA	45.45	41.67	43.75	NA	40.00	NA	57.14	40.00	NA	NA	50.00	NA	NA	54.55	NA	NA	80.00	NA	53.33	60.00	46.67	NA	NA	NA	NA	52.63	NA	53.85	45.45	NA	55.23	54.55	-0.69	0.392036	0.664463
K	intron_retention		chr16	-	chr16:28855873-28856018				chr16:28855872-28855873;chr16:28856018-28856019		7.14	5.81	9.90	6.67	6.86	3.23	1.01	0.00	0.00	1.11	2.63	0.00	0.47	0.00	0.00	2.25	1.67	0.00	6.90	11.54	5.38	14.29	10.57	10.53	5.66	5.56	7.21	4.76	7.26	5.00	11.11	13.51	8.42	5.81	6.84	7.44	5.73	6.35	0.62	0.901029	1.000000
N	alternative_acceptor		chr1	+	chr1:202987690-202989928	chr1:202987690-202989920		chr1:202989921-202989928	chr1:202989928-202989929		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	92.86	100.00	NA	96.30	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	jcn_only_AD	SCARB1,SLC8B1	chr12	-	chr12:113759154-113770553	chr12:113759154-113770527		chr12:113770528-113770553	chr12:113770553-113770554		95.92	83.87	97.92	NA	100.00	NA	96.61	95.00	98.33	100.00	100.00	100.00	95.59	100.00	100.00	98.61	94.67	100.00	NA	96.55	NA	100.00	94.03	96.30	100.00	93.33	94.55	100.00	92.11	100.00	100.00	100.00	NA	95.74	97.56	97.01	96.10	96.23	0.14	0.496107	0.739002
K	intron_retention	NUMA1	chr11	-	chr11:71716416-71717080				chr11:71716415-71716416;chr11:71717080-71717081		8.62	7.81	9.28	0.00	4.00	0.00	3.17	5.66	4.76	2.22	13.51	1.54	3.37	4.44	8.05	3.85	2.67	0.00	11.76	5.41	3.45	6.67	16.44	3.28	0.00	1.54	6.19	8.33	6.35	5.66	0.00	8.86	0.00	9.09	5.88	6.90	3.27	4.93	1.66	0.977888	1.000000
N	jcn_only_AA	RPS5	chr19	+	chr19:58905963-58906048;chr19:58905963-58906078	chr19:58905963-58906075		chr19:58906049-58906075;chr19:58906076-58906078	chr19:58906075-58906076;chr19:58906078-58906079		5.26	1.74	0.00	0.27	0.39	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.16	0.00	0.00	1.82	0.00	0.70	0.00	0.75	1.77	0.51	0.00	0.00	0.00	0.00	0.00	5.97	0.00	1.73	1.07	0.32	0.56	1.12	0.00	-1.12	0.493943	0.749796
N	alternative_acceptor	NFE2L2	chr2	-	chr2:178096737-178097119;chr2:178092682-178097119	chr2:178096759-178097119		chr2:178092682-178096736;chr2:178096737-178096758	chr2:178092681-178092682;chr2:178096736-178096737		0.55	9.20	2.74	5.31	2.70	24.04	1.85	0.00	1.57	2.03	2.09	1.30	3.03	2.38	1.90	3.12	1.55	1.95	19.05	0.46	3.64	1.81	2.82	2.22	NA	0.53	2.05	0.61	0.79	0.40	0.60	4.32	19.35	2.91	1.54	2.42	9.20	0.54	-8.66	0.060612	0.574109
K	cassette	C9orf16	chr9	+	chr9:130922766-130925721	chr9:130922766-130924282;chr9:130925232-130925721		chr9:130924283-130925231			5.26	2.08	6.52	0.00	1.16	0.00	0.00	0.00	0.00	1.82	2.06	0.00	1.10	0.00	3.03	1.75	4.76	0.00	1.14	4.35	1.36	2.33	3.92	3.23	0.00	4.17	5.71	0.00	3.91	1.61	1.96	5.00	1.34	1.67	2.53	1.27	1.12	3.06	1.94	0.141195	0.709176
N	alternative_acceptor	CDC16	chr13	+	chr13:115030716-115037658;chr13:115030716-115035037;chr13:115030716-115037645	chr13:115030716-115037752		chr13:115035038-115037645;chr13:115037646-115037658;chr13:115037659-115037752	chr13:115037645-115037646;chr13:115037658-115037659;chr13:115037752-115037753		12.50	1.14	0.00	5.13	5.41	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	5.88	0.00	7.69	7.89	0.00	14.49	5.00	6.90	0.00	5.36	12.50	0.00	11.76	2.38	0.00	5.66	4.00	0.00	10.34	9.23	4.88	8.16	3.57	0.57	5.44	4.87	0.622917	0.854460
K	intron_retention		chr9	+	chr9:140509453-140509525				chr9:140509452-140509453;chr9:140509525-140509526		44.44	38.46	40.00	37.50	28.00	25.00	13.51	18.75	18.18	8.33	11.11	0.00	15.91	18.92	26.92	7.69	15.15	NA	36.70	42.86	30.43	25.00	31.82	36.36	33.16	31.82	40.62	23.08	29.55	38.10	63.16	50.00	45.10	31.25	41.18	41.18	34.93	37.34	2.41	0.858564	1.000000
K	intron_retention	EEF2	chr19	-	chr19:3976746-3977212				chr19:3976745-3976746;chr19:3977212-3977213		1.31	0.80	1.12	0.22	0.51	0.31	0.00	0.00	0.00	0.14	0.14	0.19	0.13	0.00	0.24	0.35	0.14	0.00	0.27	3.92	1.06	0.39	0.69	0.63	0.00	1.35	0.82	0.22	0.30	0.41	5.98	2.90	1.32	0.34	0.88	0.48	0.20	1.33	1.13	0.322007	1.000000
K	intron_retention	GBA2	chr9	-	chr9:35738372-35738522				chr9:35738371-35738372;chr9:35738522-35738523		66.67	82.61	82.35	80.00	72.73	NA	33.33	NA	NA	40.00	40.00	NA	41.18	18.75	26.67	35.71	38.89	NA	72.73	81.82	66.67	78.57	63.33	71.43	NA	71.43	65.52	63.64	85.00	54.55	58.82	65.52	NA	66.67	68.97	65.38	56.95	66.67	9.72	0.975520	1.000000
N	cassette	RASAL3	chr19	-	chr19:15562750-15563468	chr19:15562750-15562855;chr19:15562920-15563468		chr19:15562856-15562919			75.76	57.50	73.91	NA	66.67	NA	NA	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	100.00	NA	71.74	80.95	84.38	NA	58.82	NA	49.02	92.31	86.67	NA	87.50	NA	75.00	73.53	49.18	NA	73.33	NA	57.50	86.63	29.13	0.087330	0.652861
K	cassette	UBE2J2	chr1	-	chr1:1192511-1198725	chr1:1192511-1192587;chr1:1192691-1198725		chr1:1192588-1192690			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	97.87	100.00	100.00	100.00	100.00	0.00	0.220440	0.709176
K	jcn_only_AA	SF1	chr11	-	chr11:64534719-64535042	chr11:64534724-64535042		chr11:64534719-64534723	chr11:64534718-64534719		94.59	100.00	94.44	90.48	87.80	83.33	91.30	87.50	91.89	86.32	83.72	87.50	93.51	93.33	94.39	85.48	88.10	90.00	90.00	89.47	91.89	88.37	91.78	91.43	NA	92.11	95.12	86.96	91.80	94.44	88.46	91.23	86.67	94.23	90.57	92.65	91.30	90.79	-0.51	0.600051	0.814519
K	jcn_only_AA	WDR83	chr19	+	chr19:12781426-12781524	chr19:12781426-12781508		chr19:12781509-12781524	chr19:12781524-12781525		100.00	100.00	95.24	NA	100.00	NA	100.00	NA	NA	NA	90.00	NA	100.00	NA	NA	100.00	NA	NA	89.47	100.00	100.00	100.00	94.12	NA	100.00	81.82	80.00	NA	100.00	NA	85.71	83.87	100.00	100.00	91.30	93.75	100.00	92.85	-7.15	0.280369	0.663989
K	alternative_acceptor	FAM213B,SH3D21	chr1	+	chr1:36787380-36787967	chr1:36787380-36787964		chr1:36787965-36787967	chr1:36787967-36787968		96.43	100.00	100.00	95.65	94.87	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.92	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	cassette	FAM174A	chr5	+	chr5:99897893-99921884	chr5:99897893-99917050;chr5:99917109-99921884		chr5:99917051-99917108			0.00	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	4.76	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709410
N	alternative_acceptor	PLOD3	chr7	-	chr7:100853924-100854871	chr7:100853955-100854871		chr7:100853924-100853954	chr7:100853923-100853924		100.00	89.29	NA	NA	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	100.00	81.82	86.67	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.55	100.00	100.00	100.00	100.00	0.00	0.521953	0.806364
N	intron_retention		chr19	-	chr19:36395537-36398347				chr19:36395536-36395537;chr19:36398347-36398348		40.62	40.00	57.69	29.41	35.96	23.68	16.67	13.33	NA	NA	12.50	NA	20.00	NA	23.08	NA	13.33	NA	41.33	46.67	43.59	46.15	48.00	NA	39.56	51.72	34.69	50.00	47.92	45.45	75.00	54.29	48.84	47.62	51.85	53.33	39.78	46.67	6.89	0.713396	1.000000
K	intron_retention	AKAP13	chr15	+	chr15:86291041-86291982				chr15:86291040-86291041;chr15:86291982-86291983		92.86	100.00	100.00	88.89	81.25	100.00	100.00	86.96	100.00	92.31	95.92	93.33	85.71	NA	90.48	92.31	97.92	100.00	83.33	100.00	87.23	100.00	100.00	92.11	96.15	90.24	93.98	100.00	100.00	100.00	88.64	90.28	76.19	91.80	100.00	89.58	90.93	90.24	-0.69	0.983879	1.000000
N	cassette	DRAM1	chr12	+	chr12:102308011-102314993;chr12:102295212-102314993	chr12:102295212-102313886,chr12:102308011-102313886;chr12:102313980-102314993		chr12:102313887-102313979			86.79	100.00	82.03	85.71	83.33	84.66	93.00	94.65	93.08	95.06	94.40	92.83	87.93	91.56	92.31	92.81	92.62	92.62	74.47	82.73	88.24	89.19	93.52	86.94	82.35	86.97	84.86	89.21	92.42	90.00	79.03	74.05	79.17	89.81	89.42	83.41	85.14	86.88	1.74	0.862369	0.951806
K	cassette	PPP4C	chr16	+	chr16:30087797-30093804	chr16:30087797-30092520;chr16:30092632-30093804		chr16:30092521-30092631			65.96	78.85	64.41	88.89	86.67	75.00	95.12	83.78	85.29	91.89	87.76	88.00	88.24	84.62	82.05	86.76	94.74	95.45	86.96	84.21	91.67	90.00	81.43	93.75	68.42	78.26	76.47	87.50	89.80	88.89	70.21	70.77	76.47	86.05	85.71	77.08	82.91	81.02	-1.88	0.398872	0.715166
K	intron_retention	TYMP	chr22	-	chr22:50964586-50964674				chr22:50964585-50964586;chr22:50964674-50964675		73.26	71.88	84.62	80.30	73.08	73.81	NA	51.35	57.14	NA	NA	NA	NA	56.41	75.61	76.92	NA	NA	72.92	76.09	76.36	83.33	76.19	88.24	66.67	71.79	71.43	78.43	74.07	80.25	78.57	81.71	80.00	69.57	68.18	80.85	72.40	72.53	0.12	0.717091	1.000000
N	cassette	WBP1	chr2	+	chr2:74685799-74686769;chr2:74685665-74686769	chr2:74685799-74686123,chr2:74685665-74686123;chr2:74686226-74686769		chr2:74686124-74686225			0.00	0.00	3.23	NA	0.00	NA	2.63	6.67	7.89	0.00	7.14	0.00	2.50	7.14	3.57	0.00	4.17	NA	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	6.25	7.14	0.00	0.00	0.00	0.00	0.00	3.12	3.12	0.167386	0.709176
K	cassette	PRCC	chr1	+	chr1:156756967-156764456	chr1:156756967-156761488;chr1:156761585-156764456		chr1:156761489-156761584			95.00	100.00	92.31	100.00	94.29	100.00	100.00	95.45	91.43	100.00	93.55	95.65	100.00	100.00	94.12	100.00	94.59	100.00	100.00	94.12	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.72	-2.28	0.078034	0.641134
N	cassette	TYROBP	chr19	-	chr19:36398476-36399076;chr19:36398167-36399076;chr19:36398483-36399069;chr19:36398167-36399069;chr19:36398483-36399076	chr19:36398167-36398631,chr19:36398483-36398631,chr19:36398476-36398631;chr19:36398665-36399069,chr19:36398665-36399076		chr19:36398632-36398664			86.20	88.70	81.05	90.30	89.48	91.93	90.92	90.33	88.75	90.15	89.15	90.55	89.70	89.07	87.71	89.35	87.57	85.22	86.84	82.29	84.15	86.85	87.88	88.00	87.61	86.51	78.39	88.40	86.84	90.11	88.59	81.22	85.93	86.50	85.84	88.90	88.16	87.55	-0.60	0.442975	0.746613
N	alternative_acceptor		chr8	.	chr8:15978690-16001066;chr8:15998555-16001066;chr8:15998566-16001066;chr8:15998463-16001066	chr8:15998564-16001066		chr8:15978690-15998462;chr8:15998463-15998554;chr8:15998555-15998563;chr8:15998564-15998565	chr8:15978689-15978690;chr8:15998462-15998463;chr8:15998554-15998555;chr8:15998563-15998564		0.00	8.33	NA	NA	3.70	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	14.29	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	13.33	0.00	0.00	0.00	8.33	0.00	-8.33	0.081517	0.585944
K	jcn_only_AD	YBX3	chr12	-	chr12:10854734-10854857;chr12:10854734-10855010;chr12:10854734-10856658	chr12:10854734-10856649		chr12:10854858-10855010;chr12:10855011-10856649;chr12:10856650-10856658	chr12:10855010-10855011;chr12:10856649-10856650;chr12:10856658-10856659		100.00	100.00	93.23	94.00	93.75	88.24	95.35	92.73	94.24	93.24	96.43	92.12	94.34	92.42	93.79	94.40	94.89	95.15	95.65	91.67	90.27	94.32	93.83	92.44	100.00	97.30	93.71	92.62	97.40	92.48	88.24	94.57	96.00	91.21	92.45	93.08	95.83	92.58	-3.25	0.151631	0.657607
K	cassette	SRSF7	chr2	-	chr2:38975796-38976670	chr2:38975796-38976039;chr2:38976316-38976670		chr2:38976040-38976315			16.51	34.48	30.23	21.74	40.74	NA	9.89	18.75	12.66	4.26	9.15	2.78	14.44	24.64	14.68	5.94	10.22	3.45	33.33	27.78	14.81	29.41	36.96	37.74	46.15	43.20	28.42	21.57	42.86	26.09	45.45	52.78	39.34	37.84	42.86	33.96	33.91	26.21	-7.70	0.978112	0.995133
N	cassette	PSMA4	chr15	+	chr15:78834562-78837210;chr15:78834562-78836531	chr15:78834562-78834917;chr15:78834988-78837210,chr15:78834988-78836531		chr15:78834918-78834987			95.00	100.00	97.83	100.00	89.47	NA	94.59	97.73	97.89	93.42	90.54	88.17	96.55	95.35	95.61	92.06	90.41	92.13	100.00	97.37	100.00	90.91	93.18	95.56	NA	98.73	95.35	90.91	92.31	90.62	98.00	95.59	NA	94.29	97.37	89.47	98.28	97.55	-0.72	0.633934	0.867338
K	intron_retention	NFKBIE	chr6	-	chr6:44226817-44226949				chr6:44226816-44226817;chr6:44226949-44226950		92.14	87.98	91.02	88.39	89.03	86.28	100.00	93.14	89.96	88.89	86.40	88.75	90.91	91.39	93.26	91.89	87.14	86.18	83.52	82.28	83.48	87.50	84.24	84.41	95.38	90.86	92.13	85.09	82.12	82.46	84.52	84.67	83.43	89.60	90.35	90.51	89.44	91.12	1.68	0.934926	1.000000
N	alternative_acceptor	RAE1,RPRD1B	chr20	+	chr20:55949858-55953068	chr20:55949858-55951234		chr20:55951235-55953068	chr20:55953068-55953069		8.70	3.45	11.11	3.45	1.85	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	2.70	0.00	0.00	9.09	2.78	3.57	5.56	6.67	7.69	7.14	2.94	4.00	2.86	3.23	8.82	6.00	1.89	3.85	5.56	8.33	2.67	8.70	6.03	0.101455	0.598353
K	alternative_acceptor	GMPR2	chr14	+	chr14:24707612-24707794;chr14:24707612-24707802	chr14:24707612-24707832		chr14:24707795-24707802;chr14:24707803-24707832	chr14:24707802-24707803;chr14:24707832-24707833		0.00	0.00	4.17	NA	11.11	NA	10.00	5.00	16.67	0.00	4.00	18.18	10.81	10.71	0.00	27.27	14.29	NA	6.67	0.00	11.11	NA	12.50	NA	0.00	14.81	7.14	NA	7.14	0.00	0.00	7.69	16.67	NA	11.11	NA	8.34	2.50	-5.84	0.556456	0.826636
K	intron_retention	FDXR	chr17	-	chr17:72860687-72860945				chr17:72860686-72860687;chr17:72860945-72860946		0.00	6.76	8.11	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	4.17	14.29	8.11	NA	NA	NA	14.00	0.00	5.41	NA	0.00	NA	15.56	9.21	6.78	21.43	13.33	NA	5.46	7.14	1.68	0.941570	1.000000
K	jcn_only_AD	ARPC4,ARPC4-TTLL3	chr3	+	chr3:9834809-9839342;chr3:9834866-9839342	chr3:9834390-9839342		chr3:9834390-9834808;chr3:9834809-9834865	chr3:9834389-9834390;chr3:9834808-9834809		1.99	5.88	3.75	0.00	5.94	0.00	4.66	2.07	2.84	1.75	3.17	1.67	4.20	2.99	3.91	1.98	2.69	2.20	7.02	2.10	0.00	1.64	3.42	1.55	5.26	2.11	3.82	1.39	6.18	2.38	3.39	2.14	4.92	1.67	3.12	4.14	5.09	2.10	-2.98	0.000292	0.060704
K	intron_retention	XAB2	chr19	-	chr19:7690931-7691021				chr19:7690930-7690931;chr19:7691021-7691022		13.64	8.33	9.09	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	3.57	0.00	0.00	NA	18.75	0.00	NA	16.67	23.08	0.00	3.12	13.16	10.00	7.69	NA	12.50	9.52	NA	12.50	14.81	12.50	0.00	7.81	7.81	0.513111	1.000000
K	intron_retention	SDSL	chr12	+	chr12:113874681-113875690				chr12:113874680-113874681;chr12:113875690-113875691		3.92	3.51	7.69	3.12	1.09	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.12	1.96	1.37	0.00	6.52	NA	0.00	3.64	3.03	5.88	0.00	0.00	3.70	4.21	3.12	0.00	4.00	5.88	1.56	2.80	1.24	0.928105	1.000000
K	intron_retention	FXR2	chr17	-	chr17:7495244-7495571				chr17:7495243-7495244;chr17:7495571-7495572		4.26	2.27	12.07	0.00	4.76	0.00	4.17	7.69	0.00	4.00	0.00	0.00	0.00	0.00	3.77	0.00	3.57	0.00	4.35	4.76	5.00	0.00	3.03	0.00	0.00	0.00	7.79	0.00	7.69	0.00	2.17	2.38	6.90	5.41	3.45	0.00	3.22	3.21	-0.00	0.933102	1.000000
K	intron_retention		chr10	+	chr10:81111340-81112072				chr10:81111339-81111340;chr10:81112072-81112073		5.10	3.17	2.79	0.00	0.57	0.00	0.00	0.00	0.00	0.11	0.00	0.33	0.00	0.00	0.00	0.26	0.22	0.40	0.00	8.65	1.15	0.84	1.02	0.38	0.00	0.00	0.94	0.31	0.33	0.24	6.74	4.12	3.12	1.61	1.76	0.30	0.00	2.55	2.55	0.360070	1.000000
K	jcn_only_AA	SH3BP1	chr22	+	chr22:38038623-38038905	chr22:38038623-38038901		chr22:38038902-38038905	chr22:38038905-38038906		97.73	100.00	98.86	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	98.41	NA	92.00	100.00	96.25	NA	100.00	NA	100.00	100.00	80.00	100.00	100.00	NA	100.00	100.00	0.00	0.254238	0.663989
K	intron_retention	ARFGAP1	chr20	+	chr20:61919100-61919661				chr20:61919099-61919100;chr20:61919661-61919662		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	95.65	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.608000	1.000000
K	jcn_only_AD	MZT2B	chr2	+	chr2:130940026-130940199;chr2:130939371-130940199	chr2:130939404-130940199		chr2:130939371-130939403;chr2:130939404-130940025	chr2:130939370-130939371;chr2:130939403-130939404		0.00	2.38	6.82	1.71	0.56	0.83	1.45	0.00	0.00	0.83	1.38	0.00	0.00	0.00	0.00	0.00	1.56	0.00	1.08	0.00	0.00	1.49	1.12	0.00	1.79	0.00	0.00	0.00	0.53	0.00	0.00	0.00	1.02	0.00	2.41	0.00	1.27	0.00	-1.27	0.011268	0.262034
N	cassette	XRCC1	chr19	-	chr19:44050259-44051035	chr19:44050259-44050746;chr19:44050880-44051035		chr19:44050747-44050879			100.00	100.00	100.00	NA	95.24	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.74	NA	92.31	NA	100.00	100.00	100.00	NA	100.00	NA	72.73	94.74	82.35	100.00	95.00	NA	100.00	100.00	0.00	0.774171	0.932662
K	intron_retention	GAK	chr4	-	chr4:860814-925858				chr4:860813-860814;chr4:925858-925859		92.86	89.29	94.44	92.86	100.00	NA	90.48	84.38	90.91	88.24	91.67	92.86	95.83	91.43	92.31	89.47	95.83	84.62	NA	95.45	88.24	100.00	100.00	94.12	95.24	94.12	94.44	93.33	100.00	92.31	95.65	93.10	84.62	95.65	100.00	93.94	90.48	93.49	3.01	0.909150	1.000000
N	jcn_only_AD	ADAM28	chr8	+	chr8:24200614-24201018	chr8:24200695-24201018		chr8:24200614-24200694	chr8:24200613-24200614		95.31	100.00	93.05	86.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.65	100.00	100.00	100.00	98.97	100.00	100.00	0.00	0.373901	0.657607
K	intron_retention	HDAC10,MAPK12	chr22	-	chr22:50684522-50684726				chr22:50684521-50684522;chr22:50684726-50684727		0.00	5.88	4.55	0.00	4.76	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	8.33	0.00	0.00	NA	4.92	0.00	4.76	8.33	0.00	0.00	3.03	6.67	11.54	7.14	6.45	0.00	0.00	8.82	8.62	NA	5.00	0.00	3.97	0.00	-3.97	0.825949	1.000000
K	intron_retention	ATXN2L	chr16	+	chr16:28847444-28847769				chr16:28847443-28847444;chr16:28847769-28847770		94.55	100.00	97.22	90.48	97.06	68.75	89.66	92.31	87.88	74.07	66.67	57.14	83.78	90.48	90.00	78.79	65.38	57.14	96.00	90.62	94.29	90.91	95.83	89.47	100.00	94.59	100.00	100.00	93.94	90.48	100.00	96.34	100.00	96.77	97.56	91.49	98.00	93.43	-4.57	0.961676	1.000000
K	intron_retention	SPNS1	chr16	+	chr16:28986422-28986508				chr16:28986421-28986422;chr16:28986508-28986509	chr16:28986115-28986421;chr16:28986509-28986713	87.50	90.70	89.66	NA	100.00	NA	87.67	88.46	92.11	91.11	83.64	85.71	82.72	88.46	90.00	91.14	83.64	85.00	83.33	80.00	90.91	88.57	88.10	91.67	91.18	86.96	90.48	92.59	91.49	85.71	85.71	85.71	83.33	87.80	89.58	83.72	85.50	87.23	1.73	0.934214	1.000000
K	intron_retention	MERTK	chr2	+	chr2:112760765-112761480				chr2:112760764-112760765;chr2:112761480-112761481		2.27	6.90	4.61	NA	6.38	NA	0.00	0.00	0.00	0.00	1.26	0.00	0.79	0.00	0.00	0.00	1.57	0.00	NA	1.01	0.00	NA	4.96	0.00	NA	4.69	5.96	NA	4.58	NA	0.00	7.35	7.14	5.26	9.03	0.00	3.85	0.51	-3.34	0.467128	1.000000
N	jcn_only_AD	MAGED2	chrX	+	chrX:54842112-54842313;chrX:54842124-54842313	chrX:54841209-54842313					7.32	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	11.86	5.81	0.00	0.00	0.00	0.00	7.48	5.19	0.00	0.00	0.00	8.20	6.94	7.69	0.00	0.00	0.00	0.00	7.40	7.40	0.119592	0.657607
K	intron_retention	ABCF3	chr3	+	chr3:183911023-183911152				chr3:183911022-183911023;chr3:183911152-183911153		2.22	0.00	0.00	0.00	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.19	2.08	0.00	2.27	0.00	0.00	0.00	0.00	2.00	0.00	5.88	2.84	3.85	1.35	1.64	1.47	0.00	1.00	1.00	0.713752	1.000000
K	jcn_only_AD	PBXIP1	chr1	-	chr1:154920482-154920701	chr1:154920482-154920608		chr1:154920609-154920701	chr1:154920701-154920702		94.59	100.00	100.00	NA	100.00	NA	98.55	96.77	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.469936	0.721034
K	intron_retention		chr17	+	chr17:61907550-61907630				chr17:61907549-61907550;chr17:61907630-61907631		0.00	2.60	5.93	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	1.64	1.98	0.00	3.65	4.88	0.00	2.56	2.46	2.33	1.13	5.45	6.12	6.36	5.88	2.94	2.44	3.92	1.30	0.82	-0.48	0.685222	1.000000
K	alternative_acceptor	CEP164,NDUFV1	chr11	+	chr11:67375950-67376030	chr11:67375950-67376022		chr11:67376023-67376030	chr11:67376030-67376031		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.83	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	94.44	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.891099	0.962250
N	alternative_acceptor	SRSF6	chr20	+	chr20:42089239-42089348;chr20:42089239-42089342	chr20:42089239-42091983		chr20:42089343-42089348;chr20:42089349-42091983	chr20:42089348-42089349;chr20:42091983-42091984		2.38	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.79	3.39	2.56	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	1.54	4.65	4.55	8.33	1.96	0.00	2.41	0.00	1.19	1.19	0.840972	0.943575
K	jcn_only_AA	POLR2E	chr19	-	chr19:1088681-1089470;chr19:1086988-1089470	chr19:1088720-1089470		chr19:1086988-1088680;chr19:1088681-1088719	chr19:1086987-1086988;chr19:1088680-1088681		100.00	93.33	95.58	94.71	92.54	95.14	94.39	94.64	97.04	95.96	96.73	95.36	96.00	96.97	97.67	94.74	95.95	97.06	92.86	100.00	96.33	94.84	92.93	95.61	91.24	100.00	96.58	100.00	93.53	94.97	90.91	95.53	93.89	94.87	95.92	95.28	93.61	98.48	4.88	0.075892	0.663989
N	alternative_acceptor		chr15	+	chr15:64428610-64429044;chr15:64428610-64429063	chr15:64428610-64429059		chr15:64429045-64429059;chr15:64429060-64429063	chr15:64429059-64429060;chr15:64429063-64429064		96.55	97.70	100.00	100.00	100.00	95.00	96.47	100.00	95.83	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	96.72	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	97.14	100.00	98.85	97.53	-1.32	0.591105	0.844088
K	jcn_only_AA	DDX54	chr12	-	chr12:113596915-113599074	chr12:113596918-113599074		chr12:113596915-113596917	chr12:113596914-113596915		41.67	58.65	44.44	65.52	47.06	47.37	61.54	54.55	50.00	58.33	62.79	75.00	58.49	58.33	55.26	65.15	61.54	38.89	52.68	50.00	60.78	65.85	55.70	54.17	42.11	NA	62.50	54.29	62.71	66.67	46.67	50.00	55.14	58.33	64.29	40.91	56.81	50.00	-6.81	0.294761	0.663989
N	cassette	NBN	chr8	-	chr8:90955595-90960051;chr8:90949304-90960051;chr8:90949304-90965471	chr8:90949304-90958367,chr8:90955595-90958367;chr8:90958524-90965471,chr8:90958524-90960051		chr8:90958368-90958523			100.00	100.00	98.68	97.96	100.00	98.94	100.00	99.06	98.21	97.25	100.00	98.42	100.00	96.79	97.95	98.90	100.00	97.98	100.00	98.37	92.59	96.77	100.00	98.73	NA	97.69	100.00	98.65	100.00	98.21	96.15	96.43	NA	98.31	100.00	98.54	100.00	98.03	-1.97	0.019132	0.375693
N	alternative_donor	LSM6	chr4	+	chr4:147097496-147104063;chr4:147096964-147104063;chr4:147097014-147104063	chr4:147097590-147104063		chr4:147096964-147097013;chr4:147097014-147097495;chr4:147097496-147097589	chr4:147096963-147096964;chr4:147097013-147097014;chr4:147097495-147097496		0.00	0.00	4.05	0.00	0.00	NA	0.00	0.00	4.76	0.00	2.08	0.00	6.12	0.00	3.03	2.27	0.00	0.00	0.00	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	SFPQ	chr1	-	chr1:35643638-35652601;chr1:35643638-35644265;chr1:35643638-35652547	chr1:35643638-35646735		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		17.78	7.56	18.18	30.68	29.67	19.75	25.00	23.08	13.33	43.86	42.22	48.65	29.63	17.65	11.54	43.08	37.78	42.42	5.22	17.95	5.26	32.47	30.49	26.14	3.88	13.33	14.00	51.11	41.27	26.44	4.65	7.32	4.67	37.36	34.29	33.98	6.39	17.71	11.32	0.581056	0.799662
K	intron_retention	MKNK2	chr19	-	chr19:2037829-2039629				chr19:2037828-2037829;chr19:2039629-2039630		96.30	100.00	94.57	100.00	100.00	100.00	100.00	90.48	95.35	100.00	90.91	NA	93.75	100.00	86.11	NA	88.46	NA	100.00	84.38	97.56	100.00	92.86	NA	91.46	91.49	95.06	NA	100.00	NA	97.92	95.19	97.78	100.00	100.00	100.00	98.89	93.89	-5.00	0.791174	1.000000
K	intron_retention	CLASRP	chr19	+	chr19:45556151-45556355				chr19:45556150-45556151;chr19:45556355-45556356		0.00	9.09	5.66	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	6.90	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	3.33	1.96	0.00	0.00	0.00	0.788333	1.000000
K	intron_retention	SPHK1	chr17	+	chr17:74382590-74382886				chr17:74382589-74382590;chr17:74382886-74382887		4.40	0.00	4.67	0.80	1.21	1.48	0.00	0.49	0.52	0.34	0.00	0.19	0.00	0.00	1.21	0.65	1.03	0.00	0.00	3.09	2.14	2.08	3.02	2.49	0.00	3.28	4.21	0.64	1.19	1.21	6.98	4.55	0.00	2.07	1.44	1.72	0.00	3.18	3.18	0.086572	1.000000
K	intron_retention	CNN2	chr19	+	chr19:1036562-1037623				chr19:1036561-1036562;chr19:1037623-1037624		1.92	0.00	2.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.00	2.56	NA	0.00	0.00	1.61	0.00	0.00	0.00	0.612201	1.000000
K	jcn_only_AD	TRAPPC3	chr1	-	chr1:36605768-36614860;chr1:36605768-36614692	chr1:36605768-36614937		chr1:36614693-36614860;chr1:36614861-36614937	chr1:36614860-36614861;chr1:36614937-36614938		89.06	88.52	95.24	84.85	90.00	85.37	93.33	90.16	85.71	89.89	89.91	93.62	91.67	84.62	82.46	85.71	88.64	86.84	90.00	94.52	92.59	87.50	85.86	93.75	100.00	93.42	95.00	91.11	89.23	93.44	90.67	88.42	83.02	78.95	88.89	94.20	90.84	90.41	-0.42	0.806927	0.908954
K	intron_retention	PSMC5	chr17	+	chr17:61907310-61907492				chr17:61907309-61907310;chr17:61907492-61907493		0.00	0.00	9.68	0.00	4.48	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	4.17	0.00	4.08	5.56	11.76	0.00	1.47	3.00	0.00	3.73	2.17	6.25	7.95	9.38	3.80	5.32	6.90	0.00	0.73	0.73	0.985900	1.000000
K	intron_retention	SEPW1	chr19	+	chr19:48284007-48284120				chr19:48284006-48284007;chr19:48284120-48284121		3.75	1.85	1.04	3.33	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.78	4.00	3.39	0.00	0.00	2.91	1.80	3.70	0.00	3.70	3.57	4.11	0.00	2.78	0.00	6.25	0.00	3.09	3.09	0.382029	1.000000
N	cassette	ADCY7	chr16	+	chr16:50342323-50343458	chr16:50342323-50342577;chr16:50342704-50343458		chr16:50342578-50342703			90.74	78.43	100.00	NA	100.00	92.31	100.00	100.00	100.00	100.00	98.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	90.24	NA	NA	82.50	85.71	100.00	98.51	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.00	96.77	100.00	99.25	-0.75	0.680065	0.883836
N	cassette	TXNDC17	chr17	+	chr17:6544548-6545568;chr17:6544473-6545568	chr17:6544548-6545072,chr17:6544473-6545072;chr17:6545253-6545568		chr17:6545073-6545252			94.44	100.00	100.00	100.00	95.31	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	100.00	100.00	94.59	96.43	100.00	91.89	96.43	94.29	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.88	92.50	89.16	95.24	100.00	100.00	97.50	98.22	0.72	0.873579	0.956379
K	intron_retention		chr11	+	chr11:212760-212836				chr11:212759-212760;chr11:212836-212837		11.48	11.63	16.95	0.00	12.20	NA	2.94	0.00	0.00	1.92	2.78	0.00	0.00	0.00	2.44	1.79	1.59	0.00	5.26	9.30	7.50	20.00	11.86	6.45	0.00	8.00	8.96	3.57	13.21	14.29	9.76	16.39	13.33	9.09	14.81	10.00	4.10	8.65	4.55	0.959084	1.000000
K	intron_retention	JTB	chr1	-	chr1:153949866-153950019				chr1:153949865-153949866;chr1:153950019-153950020		86.96	82.21	86.07	93.88	90.41	100.00	88.57	88.31	90.37	85.00	85.71	85.37	88.54	100.00	84.50	88.03	82.35	80.65	81.11	88.17	84.28	88.89	90.48	100.00	87.23	80.95	87.37	94.34	89.83	92.19	83.75	82.35	76.84	92.59	89.41	89.16	84.72	87.56	2.84	0.462534	1.000000
N	jcn_only_AA	ABCC3	chr17	+	chr17:48755581-48756713;chr17:48755581-48755877;chr17:48755581-48757158;chr17:48755581-48757145	chr17:48755581-48756716		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		0.00	0.00	0.00	NA	6.25	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	5.88	7.14	0.00	0.00	0.00	0.00	3.51	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	ATG9A	chr2	-	chr2:220085175-220085468				chr2:220085174-220085175;chr2:220085468-220085469		4.55	28.57	18.75	NA	5.88	NA	0.00	NA	0.00	NA	0.00	NA	3.12	0.00	0.00	0.00	0.00	NA	0.00	8.33	4.55	NA	10.53	NA	0.00	18.18	10.53	NA	13.33	NA	21.43	10.00	6.25	5.26	8.70	NA	1.56	8.33	6.77	0.814503	1.000000
N	alternative_acceptor	TESK1	chr9	+	chr9:35608507-35608842;chr9:35608507-35608858	chr9:35608507-35609103		chr9:35608843-35608858;chr9:35608859-35609103	chr9:35608858-35608859;chr9:35609103-35609104		0.00	0.00	0.00	0.00	0.00	NA	2.38	0.00	0.00	5.80	3.75	5.56	0.00	0.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	1.39	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.728684	0.899825
K	alternative_acceptor	RPS13	chr11	-	chr11:17096711-17097000	chr11:17096745-17097000		chr11:17096711-17096744	chr11:17096710-17096711		95.08	94.59	95.28	94.74	93.73	94.70	97.03	94.29	96.08	95.73	93.92	94.26	97.18	91.89	95.10	96.25	96.81	93.48	93.93	93.22	94.95	96.19	96.04	93.87	96.53	93.75	93.75	96.12	96.32	94.64	95.12	93.92	95.55	95.71	94.80	97.10	96.04	94.02	-2.02	0.027897	0.546324
K	intron_retention	RCE1	chr11	+	chr11:66612709-66612970				chr11:66612708-66612709;chr11:66612970-66612971		0.00	17.39	14.29	NA	5.88	NA	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	4.35	0.00	0.00	0.00	9.09	0.00	5.88	0.00	16.67	14.29	NA	NA	10.00	13.33	4.35	8.33	5.88	3.70	NA	3.03	0.00	8.70	4.54	0.00	-4.54	0.502677	1.000000
K	intron_retention		chr9	+	chr9:140508667-140508750				chr9:140508666-140508667;chr9:140508750-140508751		8.57	0.00	11.11	0.00	2.86	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.04	0.00	6.90	0.00	6.06	0.00	3.12	NA	4.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.825521	1.000000
K	intron_retention		chr19	+	chr19:36243735-36243814				chr19:36243734-36243735;chr19:36243814-36243815		5.88	0.00	10.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.70	10.34	11.11	4.55	8.33	0.00	12.00	7.41	0.00	0.00	3.70	3.33	9.38	6.25	0.00	15.79	4.00	0.00	3.52	3.52	0.599939	1.000000
N	jcn_only_AA	GRIPAP1	chrX	-	chrX:48831704-48832429	chrX:48831722-48832429		chrX:48831704-48831721	chrX:48831703-48831704		94.20	92.31	95.52	94.44	95.83	100.00	100.00	98.67	92.96	100.00	95.00	97.56	100.00	95.24	95.38	100.00	100.00	100.00	91.18	91.07	87.93	100.00	92.86	100.00	100.00	93.75	95.45	100.00	97.73	100.00	86.54	83.12	85.71	100.00	91.67	89.71	96.16	93.97	-2.18	0.600422	0.814519
N	cassette	RUFY3	chr4	+	chr4:71665923-71670064	chr4:71665923-71668672;chr4:71668701-71670064		chr4:71668673-71668700			NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	NA	90.91	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention		chr9	-	chr9:130578086-130578221				chr9:130578085-130578086;chr9:130578221-130578222		6.13	10.05	6.66	6.62	11.38	8.27	1.25	1.62	2.12	2.02	1.48	1.23	1.78	2.08	3.01	3.57	1.80	2.31	9.29	7.76	6.60	7.95	10.00	9.38	11.21	4.01	6.31	6.11	6.71	5.76	5.22	8.16	13.58	5.92	7.43	6.99	9.67	4.62	-5.05	0.347436	1.000000
N	jcn_only_AA	CFLAR	chr2	+	chr2:201983625-201983750;chr2:201983625-201997751	chr2:201983625-201994451					87.50	NA	97.73	NA	NA	7.14	96.77	96.94	95.80	90.91	82.35	94.44	87.50	94.85	95.33	83.33	86.67	100.00	NA	95.35	56.25	83.33	92.86	94.59	0.00	87.72	96.55	72.73	NA	76.92	72.73	82.61	23.08	88.00	90.48	90.32	55.29	91.28	35.99	0.214863	0.663989
K	alternative_donor	SUPT4H1	chr17	-	chr17:56428870-56429384;chr17:56428870-56429425	chr17:56428870-56429427		chr17:56429385-56429425;chr17:56429426-56429427	chr17:56429425-56429426;chr17:56429427-56429428		94.74	84.00	90.18	100.00	90.16	93.33	84.33	91.82	90.73	88.10	85.29	89.61	88.89	90.96	91.25	88.04	91.89	91.18	91.11	92.86	94.37	92.68	90.24	88.24	93.33	91.43	91.73	89.19	87.65	91.49	94.87	94.58	91.07	88.46	91.18	90.36	89.98	92.34	2.36	0.053625	0.406807
K	intron_retention		chr1	-	chr1:154936408-154938018				chr1:154936407-154936408;chr1:154938018-154938019		2.38	0.00	3.77	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.76	0.00	4.00	0.00	6.06	0.00	5.88	2.22	4.17	0.00	0.00	0.00	4.88	0.00	2.86	0.00	11.36	0.00	1.19	1.19	0.416839	1.000000
K	jcn_only_AA	CDV3	chr3	+	chr3:133293960-133302848	chr3:133293960-133302845		chr3:133302846-133302848	chr3:133302848-133302849		91.78	80.00	92.31	87.88	88.57	84.44	93.25	92.77	95.08	93.19	92.89	94.76	93.08	93.02	94.15	90.73	89.42	91.15	93.33	86.76	86.11	92.05	91.36	90.38	100.00	95.38	94.74	89.09	90.67	90.32	83.64	87.72	95.65	84.68	91.03	90.91	93.29	92.28	-1.01	0.558484	0.790535
K	intron_retention	GLMP	chr1	-	chr1:156263368-156263808				chr1:156263367-156263368;chr1:156263808-156263809		3.76	3.95	6.17	0.00	1.59	0.00	0.69	0.00	1.11	0.53	0.35	0.66	0.86	0.95	0.00	1.19	0.90	0.00	2.67	1.09	1.47	3.23	3.83	0.00	4.14	2.84	5.31	0.00	3.17	0.00	4.00	4.29	7.58	2.68	4.20	1.12	3.31	1.96	-1.35	0.724071	1.000000
K	jcn_only_AA	CRYZL1	chr21	-	chr21:34962112-34963467	chr21:34962228-34963467		chr21:34962112-34962227	chr21:34962111-34962112		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	82.35	NA	100.00	100.00	100.00	95.45	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	MFSD10	chr4	-	chr4:2934486-2934832				chr4:2934485-2934486;chr4:2934832-2934833		29.41	0.00	9.09	NA	14.29	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.64	3.70	5.26	2.44	0.00	0.00	NA	10.00	9.52	13.33	25.00	13.33	0.00	11.76	15.38	9.52	6.90	0.00	10.00	NA	NA	5.88	12.00	10.71	0.00	10.00	10.00	0.540282	1.000000
K	intron_retention	RIC8A	chr11	+	chr11:213419-214229				chr11:213418-213419;chr11:214229-214230		3.37	2.86	4.55	0.00	1.20	5.88	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	1.30	3.39	3.77	3.61	0.00	0.00	3.95	4.11	0.00	2.27	0.00	5.00	6.90	6.25	1.75	2.74	4.94	0.70	2.33	1.63	0.960196	1.000000
K	intron_retention	MPDU1	chr17	+	chr17:7490500-7490500				chr17:7490499-7490500;chr17:7490500-7490501		100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	94.44	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.629122	1.000000
N	alternative_acceptor	AGAP3,SLC29A4	chr7	+	chr7:150825772-150831486;chr7:150825772-150828158	chr7:150825772-150827290		chr7:150827291-150828158;chr7:150828159-150831486	chr7:150828158-150828159;chr7:150831486-150831487		1.75	3.51	1.71	15.38	6.25	NA	1.96	2.86	2.00	3.64	2.82	0.00	1.89	4.00	2.56	3.45	2.53	8.33	4.55	2.63	1.92	4.17	2.10	3.33	4.76	3.45	1.37	3.23	2.15	5.88	3.12	2.33	2.94	4.55	3.33	3.64	3.22	2.99	-0.23	0.626439	0.855896
N	alternative_acceptor	DPP9	chr19	-	chr19:4679959-4682707	chr19:4679982-4682707		chr19:4679959-4679981	chr19:4679958-4679959		0.00	9.09	1.54	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	WDR61	chr15	-	chr15:78577682-78578382				chr15:78577681-78577682;chr15:78578382-78578383		5.13	1.75	5.41	0.00	3.03	2.78	1.89	NA	0.00	0.00	1.79	0.00	0.00	NA	0.00	0.00	1.85	0.00	2.99	4.17	2.17	0.00	1.72	5.88	7.69	0.00	5.88	0.00	0.00	0.00	0.00	8.33	2.86	0.00	3.92	3.12	2.38	2.08	-0.29	0.623124	1.000000
K	cassette	PPP1R7	chr2	+	chr2:242089124-242097221;chr2:242089963-242097221	chr2:242089124-242092890,chr2:242089963-242092890;chr2:242093020-242097221		chr2:242092891-242093019			71.88	76.09	71.11	81.82	77.42	NA	89.23	93.10	91.89	86.54	81.58	82.05	90.62	92.00	79.41	85.37	79.10	80.77	89.29	69.70	92.86	75.00	80.00	87.50	100.00	82.61	85.29	100.00	90.91	86.36	63.64	63.27	79.31	78.26	88.24	86.36	89.26	77.25	-12.02	0.193534	0.709176
K	jcn_only_AA	IRF3	chr19	-	chr19:50164086-50165204	chr19:50164102-50165204		chr19:50164086-50164101	chr19:50164085-50164086		5.00	7.50	21.88	7.14	7.27	5.88	0.00	11.11	11.63	NA	11.11	NA	9.09	5.88	11.11	NA	9.09	NA	9.28	0.00	13.33	NA	9.76	NA	12.71	21.43	10.42	NA	6.38	20.00	0.00	7.69	6.45	NA	6.25	NA	8.29	5.44	-2.86	0.944573	0.981281
K	alternative_donor	ABCD4	chr14	-	chr14:74754963-74755418	chr14:74754963-74755362		chr14:74755363-74755418	chr14:74755418-74755419		0.00	7.32	10.81	NA	7.41	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	8.70	7.14	3.70	NA	10.53	NA	0.00	9.38	13.79	NA	11.54	0.00	9.09	12.90	0.00	0.00	5.56	4.76	0.00	3.57	3.57	0.548765	0.781638
K	alternative_last_exon	CNRIP1	chr2	-	chr2:68511617-68544288	chr2:68521159-68544288	chr2:68511303-68511616	chr2:68520142-68521158			96.88	97.97	96.91	96.83	97.59	95.24	97.30	92.31	95.83	94.29	96.83	96.30	98.85	NA	100.00	100.00	96.43	95.00	97.71	97.37	97.96	100.00	98.35	95.00	97.74	95.00	96.20	93.94	98.28	96.67	94.74	98.25	97.54	98.53	97.26	98.21	97.72	95.00	-2.72	0.042737	0.227559
K	intron_retention	ATP13A1	chr19	-	chr19:19756600-19756682				chr19:19756599-19756600;chr19:19756682-19756683		1.15	3.36	0.00	4.00	4.23	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	3.75	4.00	4.55	5.71	3.66	1.35	0.00	0.00	3.12	4.00	4.69	3.39	3.94	4.65	2.17	3.23	1.68	1.25	-0.43	0.949105	1.000000
K	alternative_acceptor	CHURC1,CHURC1-FNTB	chr14	+	chr14:65390845-65392727	chr14:65390845-65392724		chr14:65392725-65392727	chr14:65392727-65392728		9.09	1.67	8.77	8.57	5.71	7.32	7.27	5.56	8.11	17.24	7.14	11.76	11.11	8.93	7.04	8.51	20.00	16.00	3.12	5.41	6.98	9.09	8.33	6.06	3.57	6.25	7.89	10.53	4.76	10.42	1.82	8.06	5.45	9.09	11.54	8.20	4.51	5.90	1.39	0.657890	0.874938
K	intron_retention	SAFB	chr19	+	chr19:5657359-5661528				chr19:5657358-5657359;chr19:5661528-5661529		9.09	0.00	5.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	2.70	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.490513	1.000000
K	cassette	GLA	chrX	-	chrX:100655746-100656619	chrX:100655746-100656220;chrX:100656336-100656619		chrX:100656221-100656335			2.55	1.67	2.92	5.97	1.15	4.76	2.67	2.37	0.00	4.06	3.37	4.27	2.38	4.92	2.38	4.64	4.48	2.61	5.26	2.94	2.21	1.92	2.52	3.27	0.00	4.67	2.81	2.15	3.76	3.53	6.83	3.80	2.78	3.61	2.59	4.24	2.52	3.80	1.28	0.142738	0.709176
N	jcn_only_AD	CLASRP	chr19	+	chr19:45571379-45571677;chr19:45571317-45571677	chr19:45571313-45571677		chr19:45571313-45571316;chr19:45571317-45571378	chr19:45571312-45571313;chr19:45571316-45571317		20.75	16.28	20.41	20.45	16.44	18.18	50.00	40.00	50.00	66.67	69.23	NA	45.83	29.41	43.48	61.11	71.43	NA	19.09	23.08	30.65	38.89	31.91	17.86	16.67	25.93	29.55	27.78	47.37	30.43	14.58	23.66	13.73	28.95	19.44	23.08	17.88	24.50	6.62	0.867233	0.931449
N	intron_retention		chr2	+	chr2:85823773-85824226				chr2:85823772-85823773;chr2:85824226-85824227		16.13	11.54	18.92	8.00	8.47	6.67	NA	NA	9.09	0.00	7.14	0.00	12.50	4.76	12.90	5.88	4.55	0.00	7.58	11.90	9.02	20.00	11.32	13.64	9.09	21.05	21.15	15.38	18.18	20.00	25.00	23.91	5.21	14.29	19.05	21.74	9.09	16.13	7.04	0.604543	1.000000
K	cassette	ALDH16A1	chr19	+	chr19:49967207-49967673	chr19:49967207-49967383;chr19:49967521-49967673		chr19:49967384-49967520			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	82.35	100.00	93.75	100.00	100.00	100.00	0.00	0.580523	0.837925
N	cassette	EIF3M	chr11	+	chr11:32608691-32611092;chr11:32605476-32611092	chr11:32605476-32610139,chr11:32608691-32610139;chr11:32610279-32611092		chr11:32610140-32610278			83.33	84.44	81.03	68.97	81.08	58.33	84.38	86.36	81.63	84.62	85.00	71.43	81.25	76.19	78.95	75.97	80.26	85.11	91.67	88.24	89.29	83.33	86.89	82.09	70.00	80.95	82.05	80.00	81.82	71.11	80.00	82.35	84.21	84.75	87.93	84.38	84.29	82.14	-2.15	0.966710	0.991515
K	jcn_only_AA	BABAM1,CTD-2278I10.6	chr19	+	chr19:17378337-17379602;chr19:17378337-17379564	chr19:17378337-17379610		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		0.00	0.00	0.00	NA	5.26	NA	1.47	0.00	4.17	0.00	1.41	0.00	0.00	0.00	0.00	2.27	2.53	0.00	0.00	5.00	0.00	NA	5.88	0.00	0.00	0.00	2.27	0.00	0.00	0.00	5.26	4.76	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.238842	0.663989
K	intron_retention	TOR1A	chr9	-	chr9:132576502-132580798				chr9:132576501-132576502;chr9:132580798-132580799		4.17	15.38	5.08	5.56	0.00	0.00	0.00	1.01	0.00	1.67	0.00	2.38	1.64	0.00	0.99	1.61	0.00	0.00	0.00	4.00	0.00	5.71	5.56	2.50	NA	1.41	2.08	2.78	3.92	4.26	3.64	5.00	0.00	3.45	2.17	3.49	0.00	2.52	2.52	0.964976	1.000000
N	alternative_acceptor	HNRNPH1	chr5	-	chr5:179041779-179042546;chr5:179042190-179042546	chr5:179041961-179042546		chr5:179041779-179041960;chr5:179041961-179042189	chr5:179041778-179041779;chr5:179041960-179041961		93.24	95.45	95.95	98.86	98.50	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.75	100.00	98.64	100.00	98.08	95.00	96.97	96.84	96.86	97.20	100.00	96.30	96.00	97.59	99.07	98.52	91.67	93.79	89.71	96.79	97.18	97.11	99.04	95.65	-3.39	0.603446	0.848883
K	cassette	ILK	chr11	+	chr11:6630199-6630529	chr11:6630199-6630301;chr11:6630388-6630529		chr11:6630302-6630387			98.08	96.51	95.93	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.35	100.00	100.00	100.00	100.00	97.44	97.59	97.18	97.30	98.28	97.06	100.00	100.00	96.12	100.00	100.00	100.00	94.59	95.33	93.75	100.00	100.00	100.00	98.72	98.72	-0.00	0.817073	0.940103
K	intron_retention	FMNL1	chr17	+	chr17:43318598-43318748				chr17:43318597-43318598;chr17:43318748-43318749		2.60	14.58	5.39	0.00	3.70	NA	0.00	0.00	0.61	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	7.14	2.04	5.00	2.78	3.63	4.44	28.57	0.70	3.91	0.00	1.54	0.00	5.83	5.26	15.38	2.11	4.62	4.00	10.86	1.37	-9.49	0.228069	1.000000
K	cassette	RTFDC1	chr20	+	chr20:55088485-55092161	chr20:55088485-55091990;chr20:55092046-55092161		chr20:55091991-55092045			89.76	88.76	90.73	97.06	91.26	100.00	97.56	96.49	96.04	98.41	97.96	100.00	95.91	97.96	97.27	97.27	97.04	97.62	93.02	88.89	89.25	91.76	90.62	95.77	100.00	93.46	88.98	89.61	94.61	94.92	89.19	87.14	91.07	92.75	92.02	95.30	94.47	91.61	-2.86	0.471852	0.769834
K	cassette	SIL1	chr5	-	chr5:138356982-138378308	chr5:138356982-138362489;chr5:138362682-138378308		chr5:138362490-138362681			97.87	100.00	100.00	90.00	94.92	100.00	98.08	97.73	100.00	97.96	95.89	96.30	100.00	100.00	97.65	100.00	94.34	96.55	95.65	97.06	98.80	95.24	100.00	100.00	100.00	100.00	96.08	100.00	98.65	100.00	97.50	96.72	96.00	96.67	100.00	100.00	99.04	97.80	-1.24	0.944043	0.985246
N	jcn_only_AA	PCNXL3	chr11	+	chr11:65403275-65403401;chr11:65403275-65403644	chr11:65403275-65403421		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		21.43	0.00	21.74	NA	NA	NA	0.00	11.76	11.11	0.00	30.77	NA	0.00	0.00	8.33	NA	23.08	NA	25.00	23.53	NA	NA	0.00	NA	NA	21.43	19.05	NA	NA	NA	13.33	21.43	0.00	NA	28.57	26.32	0.00	17.38	17.38	0.137426	0.663989
N	coord_cassette	LGALS1	chr22	+	chr22:38073073-38075609	chr22:38073073-38074382;chr22:38074400-38074489;chr22:38074662-38075609		chr22:38074383-38074399;chr22:38074490-38074661			2.04	0.00	4.00	1.43	2.17	1.67	1.96	11.54	5.88	7.69	1.85	5.00	8.82	13.89	17.86	7.58	7.27	8.11	2.31	2.27	4.00	0.00	1.41	2.86	0.72	2.63	0.00	2.22	1.37	1.82	2.70	4.76	2.17	3.64	3.45	3.75	2.06	2.67	0.60	0.246236	0.643829
K	intron_retention	TUBGCP2	chr10	-	chr10:135107274-135111455				chr10:135107273-135107274;chr10:135111455-135111456		2.94	10.53	8.33	NA	0.00	NA	1.43	0.00	4.00	5.88	4.65	0.00	1.49	0.00	3.57	2.86	4.88	10.00	NA	0.00	NA	NA	3.23	NA	0.00	7.69	9.30	0.00	5.56	NA	10.00	7.69	NA	4.76	12.90	8.33	1.46	1.47	0.01	0.648869	1.000000
N	jcn_only_AD	SRSF5	chr14	+	chr14:70236760-70237183;chr14:70235614-70237183	chr14:70235969-70237183		chr14:70235614-70235968;chr14:70235969-70236759	chr14:70235613-70235614;chr14:70235968-70235969		100.00	100.00	100.00	100.00	100.00	NA	100.00	99.12	99.00	98.62	95.96	98.91	100.00	97.85	100.00	99.05	98.54	100.00	100.00	100.00	100.00	95.00	98.00	100.00	NA	97.50	100.00	98.00	100.00	100.00	100.00	96.43	100.00	100.00	95.65	98.18	100.00	99.56	-0.44	0.105589	0.644689
N	alternative_acceptor	PAK1	chr11	-	chr11:77060333-77064580	chr11:77060811-77064580		chr11:77060333-77060810	chr11:77060332-77060333		7.69	3.77	8.00	NA	4.76	NA	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.56	10.71	0.00	4.76	7.27	8.70	NA	10.53	7.69	0.00	5.26	NA	20.00	12.12	10.53	6.90	7.69	6.98	3.77	9.11	5.34	0.285116	0.709013
N	jcn_only_AD	TCIRG1	chr11	+	chr11:67816905-67817129;chr11:67816899-67817129;chr11:67816922-67817129;chr11:67816758-67817129	chr11:67816762-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		87.13	87.71	89.39	92.86	94.08	91.33	100.00	98.37	100.00	100.00	100.00	100.00	98.82	98.43	94.74	100.00	100.00	100.00	92.17	85.15	92.01	93.48	95.91	94.20	94.49	89.52	89.25	92.68	94.18	92.59	88.00	86.04	92.02	92.04	89.74	93.80	93.33	88.76	-4.57	0.331783	0.657607
K	alternative_acceptor	IMPDH1	chr7	-	chr7:128040237-128040386	chr7:128040259-128040386		chr7:128040237-128040258	chr7:128040236-128040237		3.08	3.39	1.74	0.00	2.56	NA	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	6.25	4.35	2.44	0.00	1.20	3.33	0.00	2.08	2.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.33	0.00	2.08	2.08	0.835242	0.940678
N	alternative_last_exon		chr12	+	chr12:113345025-113346408,chr12:113345025-113346427;chr12:113345025-113348902	chr12:113345025-113346340	chr12:113348903-113349040	chr12:113346341-113346822			99.66	88.24	91.67	NA	NA	94.12	98.18	99.57	99.82	98.33	95.00	98.74	98.04	99.57	99.66	98.26	97.67	96.10	NA	99.63	95.24	91.30	90.91	98.84	83.33	99.76	94.23	98.53	87.50	98.14	99.25	98.41	NA	97.70	84.62	98.65	93.14	99.60	6.46	0.131101	0.341377
K	alternative_last_exon	CDK12	chr17	+	chr17:37682570-37700501	chr17:37682570-37686883,chr17:37682570-37686856	chr17:37700502-37700613	chr17:37686884-37688730			95.65	100.00	93.10	100.00	100.00	100.00	100.00	100.00	95.65	100.00	97.22	100.00	95.45	95.24	95.83	100.00	100.00	100.00	NA	94.44	NA	100.00	100.00	100.00	NA	100.00	90.48	100.00	100.00	100.00	94.12	95.65	100.00	100.00	89.66	100.00	100.00	95.44	-4.56	0.190327	0.414077
K	intron_retention		chr16	-	chr16:48580166-48581917				chr16:48580165-48580166;chr16:48581917-48581918		2.27	0.00	2.68	0.00	0.00	0.00	0.00	1.72	1.25	0.00	0.00	0.00	0.00	0.00	2.04	2.30	0.00	0.97	0.00	0.93	5.26	1.61	0.00	3.15	NA	2.24	1.23	1.25	0.00	1.35	0.00	2.33	0.00	4.65	7.32	3.94	0.00	1.32	1.32	0.165883	1.000000
K	intron_retention	RPL22L1	chr3	-	chr3:170585924-170586086				chr3:170585923-170585924;chr3:170586086-170586087		45.00	55.56	36.84	32.00	31.82	33.33	8.93	NA	41.67	11.11	5.13	0.00	5.26	0.00	38.46	5.94	5.13	3.12	41.94	42.86	20.34	40.00	44.44	44.44	44.12	35.71	47.37	17.39	28.00	20.00	61.54	64.29	40.35	41.67	26.92	28.57	41.14	42.86	1.72	0.991663	1.000000
N	cassette	SUMO3	chr21	-	chr21:46229034-46237862	chr21:46229034-46233776;chr21:46234020-46237862		chr21:46233777-46234019			97.56	100.00	94.12	100.00	100.00	100.00	98.31	100.00	97.73	89.36	100.00	91.30	100.00	100.00	97.83	95.56	92.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	100.00	97.22	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	98.78	-1.22	0.201545	0.709176
K	intron_retention	GSK3A	chr19	-	chr19:42734544-42734830				chr19:42734543-42734544;chr19:42734830-42734831		100.00	91.25	98.48	100.00	98.91	94.19	100.00	93.10	100.00	97.87	100.00	100.00	100.00	92.59	100.00	94.34	97.56	100.00	94.85	94.83	96.00	97.83	100.00	92.00	100.00	97.14	96.83	100.00	100.00	100.00	95.77	96.43	96.70	100.00	100.00	100.00	98.35	95.30	-3.05	0.847578	1.000000
K	intron_retention		chr19	-	chr19:50140184-50140299				chr19:50140183-50140184;chr19:50140299-50140300		2.26	1.41	3.88	7.14	2.70	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	0.00	0.00	2.65	3.31	0.00	2.94	0.00	11.76	2.37	4.76	0.00	0.00	0.00	1.94	3.05	0.00	0.00	3.08	0.00	0.00	2.10	2.10	0.997988	1.000000
K	intron_retention	LRP1	chr12	+	chr12:57578236-57578621				chr12:57578235-57578236;chr12:57578621-57578622		0.00	0.00	2.04	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.22	0.00	0.00	0.00	0.00	0.00	8.33	0.00	NA	0.00	2.33	0.00	3.92	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.14	0.00	0.00	0.00	2.07	0.00	-2.07	0.473454	1.000000
N	alternative_acceptor	CYTH4	chr22	+	chr22:37688745-37690700	chr22:37688745-37689021		chr22:37689022-37690700	chr22:37690700-37690701		0.28	1.15	0.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.30	0.00	0.00	0.00	0.00	1.69	0.23	0.27	0.00	0.00	1.04	0.00	0.38	5.26	0.00	0.00	0.00	1.42	0.12	-1.30	0.099979	0.598353
N	jcn_only_AA	HAUS4	chr14	-	chr14:23417243-23419522;chr14:23417175-23419522	chr14:23417223-23419522		chr14:23417175-23417222;chr14:23417223-23417242	chr14:23417174-23417175;chr14:23417222-23417223		95.56	100.00	97.96	NA	94.87	NA	97.73	100.00	98.57	100.00	97.62	100.00	98.18	100.00	100.00	100.00	97.47	100.00	100.00	95.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	92.59	92.31	100.00	100.00	0.00	0.440274	0.706196
K	cassette	YIF1B	chr19	-	chr19:38799698-38800044	chr19:38799698-38799863;chr19:38799969-38800044		chr19:38799864-38799968			97.37	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	MED25	chr19	+	chr19:50339664-50341836	chr19:50339664-50340103		chr19:50340104-50341836	chr19:50341836-50341837		78.38	100.00	71.15	100.00	96.67	100.00	69.23	63.00	64.86	NA	61.54	72.73	75.51	61.54	52.94	73.33	50.00	68.18	100.00	75.81	100.00	NA	74.07	63.64	100.00	69.47	70.00	86.67	80.77	87.27	84.88	71.43	99.04	64.71	80.00	64.71	99.52	72.64	-26.88	0.027124	0.636137
K	intron_retention		chr11	+	chr11:47279681-47280730				chr11:47279680-47279681;chr11:47280730-47280731		26.74	18.18	22.89	11.11	12.50	NA	6.61	6.31	4.76	2.73	8.25	2.17	7.69	6.55	7.94	3.82	3.57	0.00	20.00	22.40	9.43	18.31	29.70	16.36	29.17	21.41	24.60	15.56	26.79	17.95	14.20	14.29	0.00	15.49	16.49	15.94	12.94	17.80	4.87	0.890632	1.000000
K	intron_retention	DENND4B	chr1	-	chr1:153905254-153905336				chr1:153905253-153905254;chr1:153905336-153905337		2.22	13.64	7.27	NA	11.11	NA	2.17	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.03	2.70	0.00	NA	30.00	2.56	NA	10.53	12.00	11.54	42.11	3.57	6.25	3.70	6.67	0.00	7.14	7.32	NA	9.30	14.29	11.32	13.64	2.39	-11.25	0.616179	1.000000
N	jcn_only_AA	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083274;chr19:1083066-1083141	chr19:1083066-1083151		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		4.65	7.69	4.35	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	5.00	0.00	3.60	0.00	0.00	10.34	6.25	0.00	0.00	0.00	0.00	2.38	3.08	0.00	0.00	8.57	0.00	2.33	2.33	0.360269	0.663989
N	alternative_donor	BRF1,CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660872;chr14:95660257-95660868	chr14:95660257-95660551		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		15.15	10.00	22.45	0.00	7.69	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	2.22	12.50	4.92	NA	11.76	NA	0.00	15.00	15.62	NA	9.09	0.00	25.00	12.24	9.09	7.14	12.50	5.88	5.66	13.75	8.09	0.241116	0.610791
N	cassette	COASY	chr17	+	chr17:40715341-40716463	chr17:40715341-40715978;chr17:40716194-40716463		chr17:40715979-40716193			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	IFT43	chr14	+	chr14:76548711-76548959				chr14:76548710-76548711;chr14:76548959-76548960		5.88	13.64	15.79	0.00	11.11	5.00	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	NA	NA	5.00	0.00	5.56	NA	8.33	NA	0.00	0.00	11.11	NA	0.00	10.00	6.25	12.50	11.54	NA	7.14	0.00	8.27	2.94	-5.33	0.467189	1.000000
K	alternative_donor	CSNK1D	chr17	-	chr17:80203916-80206750	chr17:80203916-80204073		chr17:80204074-80206750	chr17:80206750-80206751		18.18	11.90	34.43	3.12	6.82	2.56	2.86	2.25	3.03	3.28	5.45	5.13	3.03	3.23	6.17	2.94	4.62	2.50	3.70	15.00	8.70	14.63	12.73	14.04	13.33	12.77	15.56	8.89	7.55	5.88	10.87	17.24	10.53	16.95	22.50	19.10	7.12	11.82	4.71	0.411417	0.675004
N	alternative_acceptor	CTSK	chr1	-	chr1:150779283-150780689	chr1:150779818-150780689		chr1:150779283-150779817	chr1:150779282-150779283		0.75	0.95	1.12	0.00	0.00	NA	0.00	1.12	0.00	0.93	0.68	1.56	0.00	2.08	2.22	0.00	0.00	2.22	0.00	11.11	0.00	4.17	1.18	6.10	8.33	4.26	3.57	0.00	0.00	2.94	2.63	5.48	0.00	5.00	5.08	6.38	0.00	2.35	2.35	0.335256	0.709013
K	intron_retention	CRBN	chr3	-	chr3:3192730-3194139				chr3:3192729-3192730;chr3:3194139-3194140		7.14	0.00	12.00	NA	0.00	NA	8.33	9.09	0.00	NA	0.00	NA	4.00	0.00	7.14	14.29	5.88	NA	8.33	NA	6.67	7.69	20.00	20.00	0.00	0.00	5.88	NA	NA	0.00	NA	4.55	NA	16.67	17.65	6.67	4.00	3.57	-0.43	0.352351	1.000000
K	cassette	DERL2	chr17	-	chr17:5383465-5384420	chr17:5383465-5383706;chr17:5383780-5384420		chr17:5383707-5383779			80.65	80.00	92.31	94.44	88.46	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	92.00	100.00	100.00	100.00	80.00	90.48	85.71	80.77	92.31	89.29	NA	96.15	90.24	100.00	100.00	92.59	87.50	75.00	50.00	86.21	83.87	89.19	80.00	93.31	13.31	0.329999	0.709176
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075083-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		9.59	11.54	14.06	NA	17.65	10.00	19.70	21.05	22.78	25.00	12.28	14.29	20.00	10.68	17.50	11.54	10.91	9.52	21.43	25.00	7.89	25.00	13.33	27.27	0.00	13.04	9.09	10.00	15.79	0.00	18.87	16.07	20.00	11.54	10.26	7.69	19.85	15.96	-3.90	0.832056	0.940678
K	intron_retention		chr22	+	chr22:38041518-38042824				chr22:38041517-38041518;chr22:38042824-38042825		0.00	0.00	1.67	NA	2.78	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.97	NA	0.00	4.44	3.70	NA	3.45	NA	0.00	0.00	6.67	NA	3.45	NA	0.00	3.45	5.56	0.00	0.00	NA	0.00	0.00	0.00	0.752448	1.000000
K	alternative_last_exon	MYL6	chr12	+	chr12:56554105-56554409;chr12:56554105-56556047	chr12:56554105-56555170	chr12:56554410-56554729;chr12:56556048-56556115	chr12:56555171-56555371			95.26	96.54	94.86	97.04	97.10	97.57	94.57	90.65	95.18	93.05	94.05	93.05	93.28	91.21	93.72	94.30	92.54	92.29	97.41	94.26	96.98	95.70	96.24	95.61	97.38	91.11	95.04	93.51	95.08	95.27	94.80	94.18	97.38	95.53	96.17	95.54	96.96	92.73	-4.23	0.017241	0.184325
N	jcn_only_AA	LINC00667,SNRPD1	chr18	+	chr18:19202763-19203835;chr18:19202763-19203831	chr18:19202763-19203708		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		95.24	83.72	95.35	90.98	90.44	88.80	100.00	100.00	100.00	88.00	93.46	89.83	91.58	100.00	90.38	95.75	91.91	92.19	86.87	100.00	87.50	95.88	93.52	100.00	73.81	100.00	89.74	100.00	94.23	100.00	100.00	94.12	87.10	100.00	93.94	100.00	86.98	100.00	13.02	0.018179	0.537091
K	jcn_only_AA	ARRDC1	chr9	+	chr9:140507459-140507864;chr9:140507459-140507874	chr9:140507459-140507911		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		100.00	82.76	69.23	NA	81.82	NA	93.94	93.75	91.67	NA	92.00	NA	93.55	96.67	95.83	NA	100.00	NA	NA	NA	NA	NA	75.00	NA	NA	90.00	100.00	NA	84.21	NA	NA	72.73	66.67	58.33	90.91	72.73	88.16	95.21	7.06	0.188855	0.663989
N	cassette	PET100	chr19	+	chr19:7695546-7696358;chr19:7695733-7696358	chr19:7695546-7696117,chr19:7695733-7696117;chr19:7696208-7696358		chr19:7696118-7696207			4.83	2.24	2.24	0.90	1.66	0.60	1.20	5.19	4.11	1.21	1.02	1.21	3.33	5.80	5.56	4.41	1.06	1.47	1.59	3.23	3.34	1.52	0.78	2.24	2.92	8.47	4.81	1.79	2.97	2.08	4.96	6.21	2.82	0.83	2.53	2.13	2.53	5.08	2.54	0.005424	0.255099
K	intron_retention	AGTRAP	chr1	+	chr1:11796293-11805859				chr1:11796292-11796293;chr1:11805859-11805860		0.00	0.00	2.88	14.29	0.00	36.36	0.00	0.00	0.00	0.00	0.00	4.65	0.00	1.69	0.00	3.45	0.00	5.88	0.00	1.11	1.39	0.00	0.00	7.14	0.00	1.94	2.70	0.00	0.00	10.26	0.00	1.98	0.00	0.00	1.96	8.57	0.00	0.56	0.56	0.495883	1.000000
N	jcn_only_AA	GLMP	chr1	-	chr1:156263368-156263808;chr1:156263145-156263808;chr1:156263502-156263808	chr1:156263221-156263808		chr1:156263145-156263220;chr1:156263221-156263367;chr1:156263368-156263501	chr1:156263144-156263145;chr1:156263220-156263221;chr1:156263367-156263368		11.03	6.59	7.14	16.67	8.03	29.41	10.49	8.76	8.25	16.37	16.33	17.49	10.00	10.34	9.30	12.17	12.94	13.25	7.41	6.19	12.99	10.45	12.00	7.61	2.80	4.70	10.08	10.00	12.96	11.28	9.17	6.94	7.46	12.60	11.45	11.06	7.44	8.96	1.53	0.560841	0.791860
N	cassette	PDLIM7	chr5	-	chr5:176918148-176919405;chr5:176918422-176919405	chr5:176918148-176918807,chr5:176918422-176918807;chr5:176918927-176919405		chr5:176918808-176918926			93.67	58.62	80.68	NA	96.77	NA	100.00	95.83	93.75	100.00	92.86	NA	94.44	96.00	NA	100.00	100.00	87.50	100.00	87.50	89.09	NA	89.80	90.00	NA	83.87	74.36	NA	94.44	NA	78.12	77.14	85.71	90.48	93.33	95.45	94.44	90.59	-3.85	0.871272	0.955969
N	jcn_only_AD		chr7	-	chr7:36662857-36667688;chr7:36662857-36664189	chr7:36662857-36671641		chr7:36664190-36667688;chr7:36667689-36671641	chr7:36667688-36667689;chr7:36671641-36671642		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.536062	0.757311
K	intron_retention		chr1	-	chr1:153903080-153903167				chr1:153903079-153903080;chr1:153903167-153903168		4.76	1.16	4.26	5.26	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.69	3.85	3.33	3.77	3.57	0.00	4.44	2.30	5.00	1.64	4.17	2.70	3.30	3.12	1.61	3.37	2.70	0.00	3.57	3.57	0.498263	1.000000
N	cassette	MYO1G	chr7	-	chr7:45005460-45006270	chr7:45005460-45005671;chr7:45005880-45006270		chr7:45005672-45005879			98.76	100.00	97.66	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.76	99.71	100.00	100.00	100.00	100.00	97.87	98.19	100.00	97.22	98.25	100.00	98.82	99.10	100.00	100.00	99.13	98.50	95.93	100.00	98.00	95.83	98.76	100.00	98.79	-1.21	0.023474	0.405319
K	cassette	MBD1	chr18	-	chr18:47799326-47799933	chr18:47799326-47799703;chr18:47799842-47799933		chr18:47799704-47799841			56.25	62.50	45.83	NA	44.44	NA	86.21	84.21	82.05	86.21	84.21	95.24	81.48	80.56	75.61	82.76	88.24	86.96	NA	53.12	71.43	69.23	42.42	57.14	NA	69.77	55.56	81.82	62.50	81.25	38.71	51.02	50.00	53.33	62.96	67.35	71.99	63.01	-8.98	0.588176	0.844083
N	cassette	TPP1	chr11	-	chr11:6637306-6637891	chr11:6637306-6637545;chr11:6637735-6637891		chr11:6637546-6637734			100.00	100.00	100.00	NA	100.00	NA	99.58	99.02	99.61	99.57	99.66	99.61	99.66	99.56	100.00	100.00	100.00	99.44	NA	100.00	100.00	97.56	97.55	98.92	100.00	98.19	100.00	100.00	100.00	100.00	100.00	94.92	NA	95.86	98.39	98.80	99.83	99.78	-0.05	0.315575	0.709176
N	cassette	FERMT3	chr11	+	chr11:63986831-63987211	chr11:63986831-63986995;chr11:63987131-63987211		chr11:63986996-63987130			96.58	90.43	93.87	96.91	92.74	100.00	99.76	100.00	100.00	100.00	99.30	100.00	99.52	100.00	100.00	100.00	99.54	98.88	92.31	96.53	97.90	95.41	95.25	96.69	100.00	98.59	97.07	99.32	98.37	98.44	93.10	91.49	85.71	96.77	96.05	94.68	95.91	97.59	1.67	0.325474	0.709176
K	intron_retention		chr17	-	chr17:4688955-4689231				chr17:4688954-4688955;chr17:4689231-4689232		9.12	6.01	14.44	4.81	7.44	1.79	6.52	11.63	0.00	10.00	5.88	5.00	4.76	7.41	NA	NA	NA	NA	20.69	23.08	29.73	NA	18.18	NA	21.79	20.29	33.33	18.18	22.22	16.67	6.36	13.08	3.85	5.00	8.20	1.92	6.26	10.38	4.11	0.944396	1.000000
K	coord_cassette	CCM2	chr7	+	chr7:45104246-45112324	chr7:45104246-45108041;chr7:45108179-45109424;chr7:45109561-45112324		chr7:45108042-45108178;chr7:45109425-45109560			97.09	96.08	96.48	100.00	98.44	94.67	100.00	97.78	98.12	94.92	98.00	97.62	97.47	96.43	98.21	100.00	97.92	100.00	96.23	96.59	96.36	98.28	93.98	96.63	94.74	97.32	98.63	94.37	94.74	99.05	97.89	97.70	96.49	95.18	96.20	98.19	96.36	97.20	0.84	0.665539	0.830633
N	cassette	TP53I13	chr17	+	chr17:27896105-27898608	chr17:27896105-27896335;chr17:27896378-27898608		chr17:27896336-27896377			100.00	90.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.75	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	AKT1S1	chr19	-	chr19:50373318-50374803				chr19:50373317-50373318;chr19:50374803-50374804		2.56	0.00	9.38	NA	4.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.52	0.00	0.00	NA	0.00	3.85	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	3.33	7.14	0.00	2.78	3.45	0.00	1.28	1.28	0.762104	1.000000
K	intron_retention	CTB-43P18.1	chr5	-	chr5:138700394-138704770				chr5:138700393-138700394;chr5:138704770-138704771		98.46	100.00	100.00	91.67	96.49	100.00	100.00	92.41	95.65	100.00	100.00	100.00	100.00	97.01	100.00	97.37	98.18	100.00	93.94	93.55	96.77	97.22	95.83	100.00	100.00	97.50	96.84	100.00	94.83	100.00	91.80	95.88	100.00	94.52	96.97	97.06	100.00	95.28	-4.72	0.077348	1.000000
N	jcn_only_AA	ADRBK1	chr11	+	chr11:67052455-67052545;chr11:67052455-67052575	chr11:67052455-67052548		chr11:67052546-67052548;chr11:67052549-67052575	chr11:67052548-67052549;chr11:67052575-67052576		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	0.00	7.14	2.08	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	AKNA	chr9	-	chr9:117099587-117103812	chr9:117099587-117099839		chr9:117099840-117103812	chr9:117103812-117103813		4.00	6.90	6.98	NA	1.72	NA	2.44	0.00	1.11	0.00	1.28	0.00	3.08	0.00	1.15	0.00	1.77	0.00	5.26	6.25	0.00	NA	3.19	4.76	7.69	4.76	1.92	NA	1.59	0.00	NA	2.70	7.14	7.69	7.32	3.03	6.08	4.00	-2.08	0.164057	0.563271
K	intron_retention	SARAF	chr8	-	chr8:29921430-29923543				chr8:29921429-29921430;chr8:29923543-29923544		55.42	52.38	62.87	52.38	66.13	NA	94.55	90.14	100.00	100.00	96.85	92.68	94.59	92.31	91.23	90.91	96.26	94.23	65.52	71.67	66.67	72.92	71.54	70.97	NA	88.75	78.74	82.76	88.33	80.00	59.42	66.94	69.70	69.74	80.46	72.07	69.70	80.21	10.51	0.990115	1.000000
N	jcn_only_AA	GLMP	chr1	-	chr1:156263145-156263808;chr1:156263221-156263808;chr1:156263502-156263808	chr1:156263368-156263808		chr1:156263145-156263220;chr1:156263221-156263367;chr1:156263368-156263501	chr1:156263144-156263145;chr1:156263220-156263221;chr1:156263367-156263368		87.67	93.41	89.41	83.33	91.18	70.59	89.16	90.51	91.75	83.63	83.38	82.51	88.85	89.66	88.37	87.83	86.27	86.75	90.12	93.81	87.01	89.55	88.00	92.39	97.20	91.33	89.92	90.00	86.29	88.72	88.89	93.06	91.04	85.83	87.02	88.94	90.58	90.09	-0.50	0.421769	0.691465
K	intron_retention	INPPL1	chr11	+	chr11:71943381-71943669				chr11:71943380-71943381;chr11:71943669-71943670		5.26	0.00	8.93	NA	NA	NA	3.77	0.00	0.00	0.00	0.00	NA	6.90	2.33	2.33	0.00	6.82	NA	NA	3.57	NA	NA	8.57	6.25	12.90	4.65	7.41	NA	8.70	NA	7.69	10.87	NA	3.12	7.14	3.23	5.33	4.11	-1.22	0.990780	1.000000
K	cassette	MRPS5	chr2	-	chr2:95767469-95772167	chr2:95767469-95770384;chr2:95770476-95772167		chr2:95770385-95770475			86.67	84.75	92.31	100.00	91.30	100.00	100.00	100.00	95.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	96.43	91.67	97.06	96.00	91.38	91.30	84.21	NA	100.00	96.88	100.00	97.50	NA	90.48	93.10	97.06	90.70	90.70	94.77	95.84	1.07	0.678905	0.883836
K	intron_retention		chr9	-	chr9:130578333-130579427				chr9:130578332-130578333;chr9:130579427-130579428		1.09	1.82	1.97	2.16	1.65	5.10	0.00	0.51	0.28	0.61	0.20	0.00	0.17	0.22	0.98	0.54	0.23	0.53	0.55	1.30	0.95	2.86	1.50	10.34	1.69	0.82	1.43	2.12	1.37	2.36	0.00	2.02	0.88	0.51	2.43	4.39	0.72	0.67	-0.05	0.427392	1.000000
K	alternative_acceptor	MFSD2A,RBM8A	chr1	+	chr1:145508076-145508209	chr1:145508076-145508206		chr1:145508207-145508209	chr1:145508209-145508210		82.72	80.60	87.50	77.14	85.29	85.14	80.00	81.48	81.08	79.57	82.54	81.33	88.33	85.71	78.43	79.52	80.28	82.89	87.50	87.50	84.21	86.32	85.00	83.13	100.00	76.79	87.14	86.75	88.89	81.13	87.74	81.52	91.11	80.41	84.34	85.83	87.91	84.22	-3.70	0.254040	0.709013
K	intron_retention	TMED4	chr7	-	chr7:44619228-44620691				chr7:44619227-44619228;chr7:44620691-44620692		1.96	0.00	4.65	0.00	0.00	0.00	6.67	4.55	0.00	0.00	1.39	0.00	7.35	2.13	3.45	3.03	4.76	0.00	6.25	2.38	4.00	0.00	1.92	6.12	0.00	0.00	0.00	0.00	0.00	0.00	2.86	3.03	0.00	6.52	0.00	7.69	3.12	2.25	-0.87	0.990838	1.000000
K	alternative_acceptor	GPR108	chr19	-	chr19:6731066-6731209	chr19:6731123-6731209		chr19:6731066-6731122	chr19:6731065-6731066		83.33	95.00	91.18	85.00	89.55	85.42	89.47	86.96	85.37	83.87	80.00	85.71	92.86	81.58	91.11	87.80	90.48	82.61	90.16	92.59	91.43	94.59	89.58	93.55	96.72	83.87	92.59	88.57	86.36	91.30	92.05	92.13	89.55	95.12	91.49	94.44	91.51	85.41	-6.09	0.038527	0.560254
K	cassette	LGALS9	chr17	+	chr17:25974145-25975861	chr17:25974145-25974295;chr17:25974459-25975861		chr17:25974296-25974458			84.45	89.11	84.13	90.16	83.33	90.99	95.50	97.94	98.18	94.57	93.05	95.12	92.04	95.92	95.19	91.61	88.91	93.95	83.92	87.04	87.70	88.55	81.35	92.08	79.74	90.98	84.09	88.39	81.56	91.47	88.74	84.55	80.62	86.58	82.20	88.96	86.52	89.86	3.34	0.261189	0.709176
K	cassette	TNK2	chr3	-	chr3:195606047-195610027	chr3:195606047-195608921;chr3:195609200-195610027		chr3:195608922-195609199			92.06	100.00	96.15	NA	NA	NA	92.31	100.00	100.00	NA	100.00	NA	92.86	96.81	95.45	NA	100.00	NA	NA	89.58	NA	NA	82.35	NA	100.00	91.80	90.48	NA	90.00	NA	85.19	88.00	NA	81.82	82.35	82.61	96.43	91.93	-4.50	0.256687	0.709176
K	intron_retention	TNIP1	chr5	-	chr5:150410235-150411847				chr5:150410234-150410235;chr5:150411847-150411848		63.14	67.21	61.87	65.38	74.31	66.01	72.73	68.11	65.68	65.94	69.57	58.87	75.86	73.97	66.50	69.97	66.10	59.37	66.10	63.67	63.85	66.78	67.82	67.97	65.31	64.59	63.19	74.09	74.39	69.07	59.95	58.91	65.71	64.03	63.50	62.29	66.66	64.13	-2.53	0.735810	1.000000
N	cassette	PLGRKT	chr9	-	chr9:5361889-5436568;chr9:5382032-5436568	chr9:5382032-5431896,chr9:5361889-5431896;chr9:5431984-5436568		chr9:5431897-5431983			89.81	86.21	88.16	82.76	100.00	100.00	92.16	92.96	95.54	96.88	95.12	92.42	100.00	89.36	90.77	96.43	95.65	88.89	87.50	86.07	92.94	87.50	91.43	85.94	NA	83.33	80.51	90.91	100.00	90.48	90.00	94.12	100.00	100.00	88.89	86.24	92.16	89.59	-2.57	0.211948	0.709176
K	intron_retention		chr17	-	chr17:74718016-74719853				chr17:74718015-74718016;chr17:74719853-74719854		1.59	0.00	2.33	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	2.86	1.72	4.35	0.00	0.00	1.11	0.00	0.00	0.00	1.96	3.23	0.00	0.00	5.56	5.56	0.00	1.60	1.60	0.324610	1.000000
N	jcn_only_AA	DGKZ	chr11	+	chr11:46400787-46401041;chr11:46400787-46401003;chr11:46400787-46401044	chr11:46400787-46401018		chr11:46401004-46401018;chr11:46401019-46401041;chr11:46401042-46401044	chr11:46401018-46401019;chr11:46401041-46401042;chr11:46401044-46401045		98.33	100.00	100.00	96.77	97.62	100.00	97.47	100.00	100.00	95.00	95.45	100.00	97.89	96.97	100.00	95.65	98.89	NA	100.00	97.87	99.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.01	99.42	100.00	100.00	100.00	99.71	99.16	-0.55	0.715802	0.875250
N	jcn_only_AA	GADD45G	chr9	+	chr9:92220449-92220560;chr9:92220449-92220672	chr9:92220449-92220581		chr9:92220561-92220581;chr9:92220582-92220672	chr9:92220581-92220582;chr9:92220672-92220673		98.41	100.00	100.00	95.04	93.55	93.10	100.00	100.00	94.78	92.31	96.55	94.00	NA	96.15	97.30	93.33	90.91	93.55	96.43	100.00	96.36	96.00	92.86	95.00	100.00	100.00	100.00	94.57	91.89	92.31	100.00	100.00	100.00	95.89	100.00	95.15	100.00	100.00	0.00	0.845781	0.938257
N	alternative_donor	MRPL52	chr14	+	chr14:23299154-23299261;chr14:23299150-23299261	chr14:23299158-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		5.26	5.77	3.12	4.35	8.82	7.41	0.00	NA	10.00	0.00	0.00	NA	0.00	NA	16.67	7.69	3.33	NA	10.00	11.76	13.64	13.33	16.67	NA	7.69	5.88	6.45	30.00	16.67	9.09	10.71	9.68	8.51	7.69	15.00	23.08	6.73	8.29	1.56	0.241950	0.610791
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49950002-49950280;chr19:49950052-49950280;chr19:49949853-49950280	chr19:49949952-49950280		chr19:49949853-49949951;chr19:49949952-49950001;chr19:49950002-49950051	chr19:49949852-49949853;chr19:49949951-49949952;chr19:49950001-49950002		98.28	99.11	96.20	100.00	95.45	95.20	100.00	100.00	95.24	100.00	100.00	96.00	96.23	100.00	95.83	96.30	97.14	100.00	94.80	88.64	96.99	94.44	97.37	91.67	100.00	95.00	98.63	100.00	95.00	94.44	94.12	97.78	95.83	100.00	100.00	100.00	97.67	96.64	-1.03	0.437828	0.704827
N	jcn_only_AA	CD33	chr19	+	chr19:51738509-51738785;chr19:51738509-51738849	chr19:51738509-51738772		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		0.00	0.65	4.55	NA	2.44	NA	2.75	5.26	0.00	4.35	0.00	1.69	3.92	NA	0.00	5.41	3.41	3.03	5.56	8.70	6.52	0.00	7.27	5.26	0.00	0.00	0.00	0.00	4.84	3.23	12.50	2.50	2.38	6.25	0.00	1.45	2.56	5.26	2.69	0.336833	0.663989
N	cassette	TCEB1	chr8	-	chr8:74868290-74876721;chr8:74868290-74884311	chr8:74868290-74871999;chr8:74872054-74876721,chr8:74872054-74884311		chr8:74872000-74872053			100.00	100.00	100.00	100.00	97.85	100.00	97.85	100.00	100.00	98.45	99.06	100.00	100.00	98.04	97.01	98.63	97.80	99.08	93.88	96.43	96.49	100.00	98.28	98.08	100.00	100.00	96.55	97.27	98.10	99.34	98.08	97.18	98.41	98.95	100.00	97.98	99.20	99.04	-0.17	0.734702	0.907341
K	cassette	SRRM2	chr16	+	chr16:2809663-2810301	chr16:2809663-2809747;chr16:2810010-2810301		chr16:2809748-2810009			0.00	15.38	12.90	NA	NA	NA	4.76	10.34	4.76	5.56	6.25	NA	10.20	5.13	7.46	7.84	13.51	14.29	NA	NA	NA	NA	NA	14.29	8.33	10.00	8.33	NA	9.09	NA	NA	NA	NA	19.05	8.70	11.11	9.27	7.56	-1.70	0.354810	0.709176
K	intron_retention	RPL10	chrX	+	chrX:153628283-153629042				chrX:153628282-153628283;chrX:153629042-153629043		31.48	29.74	46.91	46.00	28.74	36.19	31.25	41.18	37.50	41.18	18.18	36.36	36.00	25.00	33.82	29.51	18.60	10.00	21.62	46.81	37.39	65.38	43.26	66.96	20.39	61.54	45.76	55.71	47.01	67.16	48.65	37.96	20.36	41.53	41.04	51.35	25.68	44.00	18.32	0.125467	1.000000
N	cassette	RBBP8	chr18	+	chr18:20596888-20606105	chr18:20596888-20602091;chr18:20602234-20606105		chr18:20602092-20602233			100.00	100.00	100.00	100.00	100.00	100.00	92.86	NA	NA	100.00	100.00	100.00	100.00	NA	NA	95.83	100.00	100.00	100.00	100.00	100.00	100.00	96.67	98.11	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention	DAXX	chr6	-	chr6:33288002-33288156				chr6:33288001-33288002;chr6:33288156-33288157		5.21	4.17	7.69	0.00	2.27	0.00	0.00	0.92	1.65	1.59	0.00	0.00	0.00	1.82	2.48	2.78	0.00	0.00	0.00	5.13	5.56	5.45	7.69	9.52	0.00	7.83	8.54	6.90	5.00	5.77	6.33	6.96	0.00	4.35	7.14	6.85	0.00	5.17	5.17	0.228360	1.000000
K	cassette	NDUFV1	chr11	+	chr11:67374548-67375866	chr11:67374548-67374769;chr11:67375088-67375866		chr11:67374770-67375087			3.45	1.22	8.62	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.77	6.25	2.27	0.00	0.00	0.00	3.45	15.38	2.86	3.45	4.00	0.00	14.29	16.67	8.33	3.57	3.45	0.00	6.25	7.50	2.86	4.44	5.26	3.70	2.04	6.25	4.21	0.251924	0.709176
K	intron_retention	EVA1B	chr1	-	chr1:36788669-36789059				chr1:36788668-36788669;chr1:36789059-36789060		18.75	15.79	7.69	44.44	12.00	14.81	0.00	0.00	0.00	5.00	0.00	NA	0.00	1.85	0.00	6.25	0.00	0.00	17.78	9.52	6.90	76.92	18.97	NA	15.66	8.11	11.11	33.33	11.54	5.56	9.38	12.00	15.56	64.29	7.69	21.43	15.61	8.75	-6.86	0.803328	1.000000
N	jcn_only_AA	TGOLN2	chr2	-	chr2:85549856-85552037;chr2:85549865-85552037;chr2:85549794-85552037	chr2:85545847-85552037		chr2:85545847-85549793;chr2:85549794-85549855;chr2:85549856-85549864	chr2:85545846-85545847;chr2:85549793-85549794;chr2:85549855-85549856		0.00	0.00	1.37	0.00	5.88	0.00	1.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	REC8	chr14	+	chr14:24648670-24648800				chr14:24648669-24648670;chr14:24648800-24648801		6.38	0.00	4.76	4.00	4.76	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	3.33	2.56	6.67	12.50	5.26	0.00	12.00	7.69	0.00	NA	4.35	3.85	6.67	3.57	9.52	0.00	10.00	0.00	5.12	5.12	0.173878	1.000000
N	cassette	PLTP	chr20	-	chr20:44536544-44538580;chr20:44536395-44538580	chr20:44536395-44538154,chr20:44536544-44538154;chr20:44538311-44538580		chr20:44538155-44538310			85.25	92.86	87.18	90.48	93.55	100.00	98.88	95.78	96.00	95.45	98.28	96.13	98.86	97.60	97.20	96.89	98.14	98.35	88.24	94.74	95.00	92.03	89.46	90.72	83.33	94.67	88.46	94.44	91.34	94.05	95.00	95.65	92.06	94.15	94.81	95.52	92.46	94.87	2.41	0.641073	0.868138
K	intron_retention		chr17	-	chr17:42285280-42286719				chr17:42285279-42285280;chr17:42286719-42286720		0.00	2.00	5.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.57	2.44	0.00	3.12	NA	0.00	2.63	1.82	0.00	1.89	NA	2.70	2.90	4.88	0.00	0.00	0.00	0.00	1.31	1.31	0.788183	1.000000
K	cassette	FCGR2A	chr1	+	chr1:161479865-161483684	chr1:161479865-161480630;chr1:161480747-161483684		chr1:161480631-161480746			88.16	92.00	94.64	87.50	85.71	91.67	50.80	60.56	60.13	61.19	45.41	68.54	47.77	54.55	59.00	57.74	38.46	59.00	NA	85.30	70.45	82.35	86.67	91.43	63.64	89.75	88.35	90.24	78.00	91.35	84.48	81.29	NA	68.13	70.27	79.78	57.22	84.89	27.67	0.302162	0.709176
K	intron_retention	PRPF4B	chr6	+	chr6:4062868-4063307				chr6:4062867-4062868;chr6:4063307-4063308		20.00	10.40	25.86	11.11	5.17	6.25	NA	NA	NA	NA	NA	NA	NA	NA	30.00	NA	NA	NA	7.55	35.00	5.00	35.29	15.38	34.78	0.00	30.00	20.93	0.00	15.38	12.90	21.43	22.86	6.56	35.29	21.88	47.37	7.05	25.71	18.66	0.008370	1.000000
N	alternative_donor	MYO9B	chr19	+	chr19:17278875-17283145	chr19:17282253-17283145		chr19:17278875-17282252	chr19:17278874-17278875		0.00	1.79	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	NA	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	1.94	0.00	-1.94	0.091941	0.479695
N	jcn_only_AD	MS4A6A	chr11	-	chr11:59940603-59943036;chr11:59940603-59942978	chr11:59940603-59942874		chr11:59942875-59942978;chr11:59942979-59943036	chr11:59942978-59942979;chr11:59943036-59943037		89.03	90.91	86.49	96.55	92.17	92.48	97.44	94.44	84.62	96.62	94.17	97.48	95.29	94.59	NA	91.60	94.44	96.91	89.60	93.65	100.00	89.72	90.30	92.72	94.18	92.39	94.12	91.74	92.97	92.34	94.74	84.62	87.50	92.31	91.56	91.70	92.55	94.05	1.50	0.723006	0.857248
N	coord_cassette	ITGAX	chr16	+	chr16:31374696-31382950	chr16:31374696-31381301;chr16:31381420-31382404;chr16:31382536-31382654;chr16:31382819-31382950		chr16:31381302-31381419;chr16:31382405-31382535;chr16:31382655-31382818			100.00	100.00	89.29	NA	90.00	NA	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	95.38	100.00	100.00	NA	91.30	100.00	80.00	69.39	81.63	100.00	100.00	100.00	89.23	85.96	100.00	100.00	81.82	NA	85.07	81.25	85.29	100.00	100.00	0.00	0.363217	0.643829
K	cassette	DPP9	chr19	-	chr19:4694836-4697562	chr19:4694836-4695389;chr19:4695568-4697562		chr19:4695390-4695567			88.00	100.00	98.04	90.00	NA	90.00	95.74	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	83.33	87.50	95.74	96.43	100.00	100.00	97.06	100.00	90.00	92.86	93.75	94.12	90.00	92.11	93.18	94.23	97.87	100.00	2.13	0.558831	0.823887
N	alternative_donor	CHIC2	chr4	-	chr4:174254147-174254268	chr4:174254147-174254219		chr4:174254220-174254268	chr4:174254268-174254269		NA	100.00	100.00	NA	100.00	NA	92.86	100.00	100.00	100.00	97.96	NA	98.36	100.00	100.00	95.24	98.28	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.265118	0.642203
N	cassette	ITGB7	chr12	-	chr12:53586323-53586923;chr12:53586323-53587491	chr12:53586323-53586474;chr12:53586695-53586923,chr12:53586695-53587491		chr12:53586475-53586694			98.36	100.00	90.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	94.12	98.72	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	0.00	0.648376	0.870529
K	jcn_only_AA	NGFRAP1,WDR13	chrX	+	chrX:48457851-48457986	chrX:48457851-48457974		chrX:48457975-48457986	chrX:48457986-48457987		100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	93.10	100.00	100.00	100.00	100.00	100.00	92.31	100.00	91.30	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.743563	0.885252
K	coord_cassette	LST1	chr6	+	chr6:31555096-31556339	chr6:31555096-31555417;chr6:31555511-31555592;chr6:31555744-31556339		chr6:31555418-31555510;chr6:31555593-31555743			6.25	3.30	0.00	4.17	2.56	3.62	7.87	10.53	9.09	5.26	6.52	8.20	10.59	4.35	NA	5.00	8.79	5.56	4.70	5.88	5.56	3.45	2.99	3.12	10.00	7.69	5.56	5.56	8.82	9.84	NA	5.26	4.07	4.41	2.70	3.23	6.29	6.25	-0.04	0.913638	0.972993
N	cassette	NOP56	chr20	+	chr20:2637542-2638574	chr20:2637542-2637726;chr20:2637865-2638574		chr20:2637727-2637864			93.10	90.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.93	94.74	97.50	97.94	98.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.96	90.91	87.40	98.18	100.00	100.00	97.97	97.37	-0.59	0.948646	0.987421
K	cassette	COPE	chr19	-	chr19:19011259-19015579	chr19:19011259-19014076;chr19:19014233-19015579		chr19:19014077-19014232			93.68	96.00	93.42	96.34	94.21	95.07	96.28	97.12	98.26	98.62	96.07	96.48	96.72	96.60	95.45	98.12	95.07	97.99	93.19	91.18	95.13	90.91	93.38	96.12	97.03	95.12	93.71	95.08	95.71	94.53	91.51	94.25	95.20	95.24	94.29	93.67	96.14	94.40	-1.74	0.229175	0.709176
N	jcn_only_AD	ARHGEF10L	chr1	+	chr1:17965828-17966696;chr1:17966477-17966696;chr1:17965809-17966696	chr1:17965185-17966696		chr1:17965185-17965808;chr1:17965809-17965827;chr1:17965828-17966476	chr1:17965184-17965185;chr1:17965808-17965809;chr1:17965827-17965828		88.96	100.00	94.55	94.74	100.00	100.00	97.92	94.71	90.62	96.73	100.00	96.30	98.48	97.09	93.65	95.27	96.27	96.72	92.31	92.50	87.50	100.00	97.70	94.95	NA	85.86	92.05	93.62	91.18	90.48	89.47	94.00	71.43	98.70	95.35	94.90	97.92	90.98	-6.94	0.919090	0.958585
N	alternative_acceptor		chr3	+	chr3:49060202-49060310	chr3:49060202-49060308		chr3:49060309-49060310	chr3:49060310-49060311		94.00	100.00	92.06	100.00	93.85	100.00	93.06	94.87	96.55	95.45	92.98	100.00	92.96	97.50	94.44	96.23	95.56	100.00	97.37	91.89	93.55	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	93.94	93.94	95.35	90.70	90.62	95.65	96.08	95.22	94.44	-0.78	0.879018	0.959032
N	alternative_acceptor	CLCN7	chr16	-	chr16:1497680-1498355;chr16:1497716-1498355	chr16:1497799-1498355		chr16:1497680-1497715;chr16:1497716-1497798	chr16:1497679-1497680;chr16:1497715-1497716		5.13	1.92	0.00	0.00	2.27	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	3.70	0.00	3.70	1.59	4.00	0.00	5.00	1.89	0.00	1.92	0.00	3.03	1.85	0.00	2.04	1.92	1.92	0.00	3.37	3.37	0.238182	0.692777
K	intron_retention	STAB1	chr3	+	chr3:52535770-52536021				chr3:52535769-52535770;chr3:52536021-52536022		0.00	8.65	1.72	NA	0.00	0.00	0.23	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00	0.00	0.20	0.00	6.98	0.00	NA	0.00	2.25	0.00	4.75	1.96	0.00	0.00	2.07	0.00	NA	0.00	11.67	0.00	2.06	0.29	5.87	0.00	-5.87	0.119370	1.000000
N	jcn_only_AA	CDK11A,RP1-283E3.8	chr1	-	chr1:1635586-1635661;chr1:1572482-1635661	chr1:1635435-1635661					25.00	41.18	35.00	41.67	34.29	36.36	12.50	0.00	17.65	NA	0.00	NA	10.53	27.78	26.32	16.67	10.00	NA	18.75	13.89	17.39	35.71	16.67	31.58	0.00	17.24	26.19	13.33	30.00	19.05	27.08	29.17	17.14	34.29	26.47	27.91	14.82	21.12	6.30	0.803282	0.916365
N	cassette	SDF2	chr17	-	chr17:26976295-26988743;chr17:26976295-26989063;chr17:26976291-26988743	chr17:26976291-26982304,chr17:26976295-26982304;chr17:26982502-26988743,chr17:26982502-26989063		chr17:26982305-26982501			98.10	100.00	97.46	100.00	98.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.08	97.09	98.89	98.15	100.00	100.00	100.00	100.00	97.27	100.00	97.22	100.00	93.81	92.55	95.65	98.68	100.00	100.00	100.00	99.05	-0.95	0.841274	0.946975
K	intron_retention	TOR3A	chr1	+	chr1:179063353-179064102				chr1:179063352-179063353;chr1:179064102-179064103		16.67	0.00	51.85	18.18	3.57	NA	0.00	2.13	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	19.23	15.79	16.00	4.35	38.89	0.00	29.03	30.00	11.76	0.00	7.69	11.54	32.14	0.00	28.57	6.33	27.12	0.00	14.11	14.11	0.136082	1.000000
K	intron_retention	CCDC107	chr9	+	chr9:35660645-35660742				chr9:35660644-35660645;chr9:35660742-35660743		23.44	32.74	29.17	31.25	31.61	24.59	10.53	11.11	20.00	0.00	12.12	0.00	8.45	9.09	11.36	8.57	14.93	0.00	26.09	25.93	18.28	21.43	27.45	18.18	28.24	23.08	23.53	27.27	23.38	17.65	28.99	33.85	26.26	22.73	22.95	17.07	26.18	23.26	-2.92	0.844042	1.000000
K	intron_retention		chr6	+	chr6:35280316-35280402				chr6:35280315-35280316;chr6:35280402-35280403		4.55	5.71	9.30	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	1.59	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.14	NA	0.00	NA	NA	0.00	0.00	7.69	10.34	0.00	0.00	0.00	0.00	0.890500	1.000000
K	intron_retention	CLMN	chr14	-	chr14:95660257-95660872				chr14:95660256-95660257;chr14:95660872-95660873		13.33	21.05	22.22	8.33	4.00	8.70	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	2.22	17.65	1.72	NA	6.25	NA	8.70	6.25	12.90	NA	9.09	9.09	25.00	8.70	9.09	8.33	7.14	13.33	8.89	9.79	0.89	0.871614	1.000000
N	cassette	SNHG5	chr6	-	chr6:86387211-86387853;chr6:86387211-86387671;chr6:86375866-86387853	chr6:86387211-86387512,chr6:86375866-86387512;chr6:86387594-86387671,chr6:86387594-86387853		chr6:86387513-86387593			93.24	95.34	97.74	97.62	96.16	96.75	93.79	87.10	97.30	97.90	96.91	96.67	78.79	100.00	93.75	86.84	82.14	83.33	96.47	95.38	95.47	95.79	97.98	98.11	95.74	100.00	97.14	97.30	94.68	95.14	94.67	97.33	95.19	97.57	97.84	97.26	95.27	95.03	-0.24	0.478954	0.771126
N	alternative_acceptor	MS4A6A	chr11	-	chr11:59943473-59945732;chr11:59943007-59945732;chr11:59944889-59945732	chr11:59943085-59945732		chr11:59943007-59943084;chr11:59943085-59943472;chr11:59943473-59944888	chr11:59943006-59943007;chr11:59943084-59943085;chr11:59943472-59943473		91.67	92.31	88.46	98.31	97.89	97.40	96.43	96.53	NA	100.00	98.99	99.36	96.02	98.08	NA	100.00	99.11	100.00	91.01	91.67	NA	100.00	96.08	99.09	88.10	95.56	95.65	98.70	96.26	99.26	NA	93.75	92.31	99.05	96.51	98.10	92.31	95.56	3.25	0.301160	0.709013
K	jcn_only_AA	GNAS	chr20	+	chr20:57474041-57478585	chr20:57474041-57478582		chr20:57478583-57478585	chr20:57478585-57478586		16.04	16.36	16.67	8.00	16.67	18.18	12.47	14.62	17.19	12.26	12.12	13.29	11.78	12.95	13.33	11.34	15.45	15.41	18.60	18.64	18.03	14.96	14.73	14.67	17.39	13.16	12.35	14.95	13.61	11.43	17.95	17.24	12.50	16.48	15.38	17.14	14.43	15.33	0.90	0.657560	0.847336
N	jcn_only_AD	SCNM1	chr1	+	chr1:151139481-151139596	chr1:151139499-151139596		chr1:151139481-151139498	chr1:151139480-151139481		100.00	94.87	98.95	100.00	97.80	100.00	100.00	98.72	100.00	100.00	96.88	97.83	98.56	97.50	94.51	100.00	96.75	100.00	97.06	100.00	97.06	100.00	97.80	100.00	100.00	97.47	97.85	98.08	97.00	100.00	100.00	98.89	100.00	100.00	100.00	98.86	99.28	99.36	0.08	0.605821	0.805858
N	cassette	AP2A2	chr11	+	chr11:992686-993753	chr11:992686-993283;chr11:993382-993753		chr11:993284-993381			100.00	97.06	100.00	NA	98.18	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	98.45	100.00	100.00	100.00	100.00	100.00	99.10	NA	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.953249	0.987421
K	intron_retention	GAS5	chr1	-	chr1:173835345-173835665				chr1:173835344-173835345;chr1:173835665-173835666		0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.98	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	1.37	5.17	0.00	0.00	0.00	0.594508	1.000000
N	cassette	BORCS8,BORCS8-MEF2B	chr19	-	chr19:19293493-19297701	chr19:19293493-19296842;chr19:19296908-19297701		chr19:19296843-19296907			100.00	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	SUGT1	chr13	+	chr13:53233385-53236783	chr13:53233385-53235609;chr13:53235706-53236783		chr13:53235610-53235705			34.15	28.33	38.71	35.29	20.51	NA	24.49	38.64	34.04	41.67	22.58	50.00	27.78	30.95	37.88	37.50	24.14	37.50	45.83	36.73	38.46	24.24	25.86	22.22	41.67	38.00	32.20	28.57	24.44	32.50	42.31	38.46	30.77	27.45	24.59	42.50	29.55	37.36	7.81	0.373382	0.709176
K	intron_retention	FGD3	chr9	+	chr9:95795156-95796822				chr9:95795155-95795156;chr9:95796822-95796823		3.64	3.36	8.93	NA	5.88	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	4.17	6.67	NA	0.00	NA	2.70	2.44	2.22	NA	2.63	NA	3.53	13.56	7.02	NA	12.90	NA	1.52	1.52	0.00	0.00	3.70	0.00	1.35	3.04	1.69	0.477821	1.000000
K	intron_retention	TUFM	chr16	-	chr16:28855656-28855739				chr16:28855655-28855656;chr16:28855739-28855740		0.00	0.00	1.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	1.79	0.76	0.00	0.64	1.27	0.00	0.00	0.00	0.00	0.00	0.00	7.69	5.00	2.29	0.00	0.00	0.00	0.00	0.00	0.00	0.714536	1.000000
K	intron_retention		chr19	+	chr19:10395334-10395458				chr19:10395333-10395334;chr19:10395458-10395459		3.78	9.09	3.33	3.60	8.11	11.22	0.00	0.45	0.34	0.60	0.00	0.38	0.00	0.62	0.15	0.46	1.38	0.71	NA	2.10	2.40	2.12	2.59	2.07	NA	1.70	1.93	1.40	2.41	1.85	2.60	2.44	0.00	2.89	4.02	1.77	0.00	1.90	1.90	0.772104	1.000000
N	cassette	ZER1	chr9	-	chr9:131497711-131503050	chr9:131497711-131502209;chr9:131502399-131503050		chr9:131502210-131502398			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	96.15	NA	90.48	NA	100.00	NA	100.00	NA	100.00	NA	NA	92.86	89.47	NA	100.00	NA	NA	100.00	96.77	NA	100.00	NA	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AD	CD37	chr19	+	chr19:49842194-49843507;chr19:49842095-49843507	chr19:49842671-49843507					95.95	93.63	87.76	98.39	96.43	96.67	100.00	96.81	100.00	100.00	97.87	100.00	100.00	95.61	100.00	100.00	100.00	97.44	96.72	94.00	96.36	94.74	95.04	100.00	91.49	95.15	90.70	98.25	97.04	99.07	91.11	85.00	89.80	90.77	89.71	95.10	95.17	95.38	0.20	0.804348	0.908253
N	jcn_only_AA		chr7	+	chr7:131163437-131172441;chr7:131163437-131164911	chr7:131163437-131172365		chr7:131164912-131172365;chr7:131172366-131172441	chr7:131172365-131172366;chr7:131172441-131172442		100.00	73.08	86.36	100.00	90.91	70.00	87.50	84.85	100.00	93.33	96.97	95.00	100.00	100.00	96.67	93.75	97.14	100.00	100.00	88.24	100.00	NA	86.67	NA	NA	93.10	83.33	100.00	82.35	95.24	87.88	93.55	89.47	76.92	100.00	88.00	89.47	90.67	1.20	0.692151	0.864632
K	jcn_only_AA	CHID1	chr11	-	chr11:882516-883147;chr11:870490-883147;chr11:874911-883147	chr11:870500-883147		chr11:870490-870499;chr11:870500-874910;chr11:874911-882515	chr11:870489-870490;chr11:870499-870500;chr11:874910-874911		88.89	95.50	87.50	88.89	92.08	90.57	83.70	83.33	90.00	88.89	92.98	97.30	83.02	90.00	94.74	83.02	86.00	86.96	95.52	91.67	95.92	90.48	93.10	90.48	92.48	NA	90.00	94.74	88.89	89.47	84.21	94.12	93.38	90.00	86.05	93.18	92.93	88.89	-4.04	0.325783	0.663989
K	intron_retention		chr11	+	chr11:63974287-63974825				chr11:63974286-63974287;chr11:63974825-63974826		2.08	6.90	10.00	NA	0.00	NA	1.64	3.17	0.00	4.50	3.55	0.00	1.64	2.11	3.70	3.06	2.31	0.00	NA	3.70	5.26	1.92	3.33	3.23	0.00	2.08	5.00	5.88	7.32	NA	0.00	2.56	7.14	6.35	4.49	2.22	1.64	2.09	0.45	0.883138	1.000000
K	jcn_only_AA	CFAP20	chr16	-	chr16:58148825-58149172	chr16:58148960-58149172		chr16:58148825-58148959	chr16:58148824-58148825		0.00	NA	2.78	NA	0.00	NA	0.00	14.29	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr1	+	chr1:6648257-6648337				chr1:6648256-6648257;chr1:6648337-6648338		5.71	0.00	0.00	0.00	1.54	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	1.49	0.00	6.00	0.00	3.23	NA	0.00	0.00	3.51	9.09	5.13	NA	6.67	8.89	3.57	0.00	0.00	NA	0.00	2.85	2.85	0.797925	1.000000
K	intron_retention		chr22	+	chr22:38039182-38039650				chr22:38039181-38039182;chr22:38039650-38039651		0.00	12.20	2.42	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.56	0.00	11.11	1.56	0.99	0.00	1.52	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.669792	1.000000
N	alternative_first_exon	TMEM59	chr1	-	chr1:54511460-54519028,chr1:54511460-54518672	chr1:54511460-54512939	chr1:54519029-54519111	chr1:54512940-54513686			98.25	100.00	100.00	100.00	100.00	NA	100.00	97.92	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	98.25	100.00	NA	97.92	98.63	100.00	100.00	100.00	96.00	95.00	100.00	100.00	100.00	98.80	100.00	98.02	-1.98	0.012767	0.066113
N	alternative_acceptor	ASCC2	chr22	-	chr22:30198123-30200626;chr22:30198198-30200626;chr22:30198231-30200626	chr22:30198128-30200626		chr22:30198123-30198127;chr22:30198128-30198197;chr22:30198198-30198230	chr22:30198122-30198123;chr22:30198127-30198128;chr22:30198197-30198198		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.90	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.178502	0.660713
K	jcn_only_AD	DYNC1LI2	chr16	-	chr16:66759848-66764014	chr16:66759848-66761590					100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.83	100.00	NA	NA	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	MYO15B	chr17	+	chr17:73622058-73622167				chr17:73622057-73622058;chr17:73622167-73622168		0.00	3.64	5.88	0.00	10.34	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	6.67	4.76	0.00	0.00	NA	3.28	0.00	9.52	NA	14.29	NA	7.14	4.35	2.78	0.00	6.67	0.00	3.03	3.33	0.31	0.675725	1.000000
K	alternative_last_exon	RPL28	chr19	+	chr19:55899417-55899556,chr19:55899417-55899614,chr19:55899417-55913676;chr19:55899417-55914310	chr19:55899417-55902921,chr19:55899417-55899610	chr19:55914311-55914618	chr19:55902922-55903171			93.94	94.16	93.36	95.38	95.37	96.57	98.91	97.94	99.08	98.48	98.97	98.06	98.15	97.47	97.81	98.01	96.78	95.85	96.88	95.20	96.41	96.00	97.51	95.73	96.24	93.91	96.14	97.08	97.16	97.82	96.32	95.55	94.90	95.74	96.94	95.82	96.56	95.76	-0.80	0.486883	0.633289
K	intron_retention	HLA-F	chr6	+	chr6:29691305-29691434				chr6:29691304-29691305;chr6:29691434-29691435		14.67	0.00	10.24	12.00	3.23	14.55	2.42	1.47	0.75	1.69	1.52	3.57	2.22	2.24	3.16	4.65	1.61	2.64	NA	15.13	6.59	24.24	3.45	25.87	11.76	11.27	9.25	12.61	8.57	11.11	9.47	8.14	0.00	30.95	16.67	23.04	2.22	10.37	8.15	0.432754	1.000000
K	cassette	ARFGAP1	chr20	+	chr20:61906993-61907831	chr20:61906993-61907442;chr20:61907553-61907831		chr20:61907443-61907552			100.00	100.00	93.75	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	94.74	100.00	94.44	NA	NA	87.50	NA	100.00	95.45	93.33	100.00	100.00	100.00	100.00	86.67	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention	TBC1D9	chr4	-	chr4:141545374-141545467				chr4:141545373-141545374;chr4:141545467-141545468		6.52	0.00	5.91	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	6.25	7.37	1.89	6.67	4.76	5.88	0.00	5.21	4.00	5.56	0.00	4.76	10.29	6.11	0.00	6.52	11.43	2.80	0.00	5.87	5.87	0.342312	1.000000
K	intron_retention		chr17	+	chr17:7125622-7125985				chr17:7125621-7125622;chr17:7125985-7125986		25.88	20.54	28.85	17.65	25.84	5.88	0.78	1.11	4.55	0.76	1.67	0.00	2.58	6.67	9.22	1.03	2.45	0.00	13.04	21.10	7.95	27.27	41.55	21.52	20.00	16.22	26.67	11.36	23.38	5.94	18.06	29.23	6.38	28.71	29.11	13.74	9.71	17.14	7.43	0.658915	1.000000
N	alternative_last_exon	TMEM63A	chr1	-	chr1:226028889-226034734	chr1:226034634-226034734	chr1:226028584-226028888	chr1:226033237-226034633			100.00	100.00	100.00	NA	95.24	95.24	96.88	98.21	100.00	NA	100.00	NA	95.83	100.00	100.00	100.00	100.00	NA	96.15	100.00	100.00	NA	95.24	NA	100.00	97.56	100.00	92.31	94.74	95.00	100.00	94.12	90.91	91.67	92.86	95.24	96.52	100.00	3.48	0.113610	0.333781
N	alternative_donor	HMGN3	chr6	-	chr6:79911444-79911992;chr6:79911444-79911785;chr6:79911444-79911772;chr6:79911444-79912033	chr6:79911444-79911810		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		0.00	1.48	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	jcn_only_AA	KMO	chr1	+	chr1:241752133-241753352;chr1:241752133-241753297;chr1:241752133-241753355	chr1:241752133-241753313		chr1:241753298-241753313;chr1:241753314-241753352;chr1:241753353-241753355	chr1:241753313-241753314;chr1:241753352-241753353;chr1:241753355-241753356		84.44	64.86	93.62	87.32	84.44	83.11	93.33	91.38	96.15	90.85	89.06	91.35	85.71	93.33	93.33	90.12	92.50	91.76	82.61	89.41	93.94	85.06	86.36	87.04	NA	91.67	89.09	89.21	85.51	85.17	85.71	86.05	90.48	86.83	85.78	87.05	85.71	90.39	4.69	0.309292	0.663989
K	jcn_only_AA	RPL22L1	chr3	-	chr3:170585924-170586086	chr3:170585991-170586086		chr3:170585924-170585990	chr3:170585923-170585924		45.00	48.39	33.33	43.33	42.31	43.59	16.39	NA	63.16	21.57	13.95	13.64	15.62	20.00	61.90	16.67	13.95	8.82	50.00	42.86	16.07	46.43	52.38	37.50	65.45	25.00	54.55	26.92	30.77	41.18	46.43	56.52	38.18	44.00	42.42	25.00	43.28	42.86	-0.42	0.756181	0.891694
N	alternative_acceptor	FHL3	chr1	-	chr1:38461186-38463355	chr1:38463232-38463355		chr1:38461186-38463231	chr1:38461185-38461186		100.00	100.00	100.00	NA	100.00	100.00	100.00	90.91	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention	KRR1	chr12	-	chr12:75895597-75895702				chr12:75895596-75895597;chr12:75895702-75895703		0.00	13.33	0.00	12.50	20.00	31.25	4.35	4.17	0.00	14.29	12.12	3.64	14.29	0.00	0.00	4.92	6.25	3.45	8.70	0.00	5.56	3.23	3.57	6.12	NA	0.00	0.00	11.76	9.52	4.44	0.00	0.00	4.55	2.63	2.13	3.64	8.70	0.00	-8.70	0.375558	1.000000
K	alternative_acceptor	STYXL1	chr7	-	chr7:75659843-75677129	chr7:75659846-75677129		chr7:75659843-75659845	chr7:75659842-75659843		21.43	17.65	25.81	NA	13.33	NA	21.74	25.00	33.33	NA	41.67	NA	22.22	31.82	21.05	21.05	30.00	40.00	30.77	20.69	18.75	18.75	17.24	12.50	NA	21.43	17.24	NA	26.09	7.14	21.43	14.29	NA	8.33	16.67	14.29	21.98	21.43	-0.55	0.875087	0.956456
N	jcn_only_AA	NAPA	chr19	-	chr19:47996278-47996375	chr19:47996303-47996375		chr19:47996278-47996302	chr19:47996277-47996278		95.24	100.00	95.06	98.31	97.40	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	92.36	97.10	98.04	97.78	95.00	100.00	95.52	100.00	100.00	100.00	99.28	87.54	93.13	91.67	94.59	96.32	96.93	100.00	95.38	-4.62	0.347390	0.663989
K	cassette	MADD	chr11	+	chr11:47346129-47350208	chr11:47346129-47348288;chr11:47348359-47350208		chr11:47348289-47348358			86.84	85.71	80.00	81.82	77.78	NA	95.00	96.43	91.30	100.00	92.31	NA	88.46	89.47	83.87	86.11	90.24	81.82	73.68	88.89	86.21	89.66	76.47	78.57	80.00	81.40	85.71	77.78	86.49	75.00	80.00	77.59	70.59	75.56	80.85	84.85	82.85	87.87	5.01	0.302563	0.709176
K	intron_retention	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62458340-62458546				chr11:62458339-62458340;chr11:62458546-62458547		2.91	2.77	7.04	0.00	2.17	0.74	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	1.99	5.00	1.45	6.06	3.75	0.00	2.70	2.22	2.56	0.00	0.00	5.17	3.23	2.80	3.51	1.37	3.33	0.87	2.35	2.57	0.22	0.981185	1.000000
K	intron_retention	SUMO1	chr2	-	chr2:203071527-203071975				chr2:203071526-203071527;chr2:203071975-203071976		100.00	100.00	99.36	98.88	98.11	98.36	96.43	98.08	96.74	96.77	93.88	95.16	97.33	95.83	98.85	100.00	95.24	92.86	98.51	100.00	96.67	97.33	100.00	100.00	100.00	97.06	97.62	96.72	97.87	100.00	100.00	98.86	99.35	97.50	100.00	99.19	98.93	99.04	0.11	0.924038	1.000000
K	intron_retention	TRPC4AP	chr20	-	chr20:33595444-33596466				chr20:33595443-33595444;chr20:33596466-33596467		3.33	0.00	5.97	NA	3.33	NA	1.25	1.00	0.61	0.00	0.00	0.00	2.22	0.97	1.01	1.64	0.00	0.00	NA	2.38	0.00	3.03	4.69	3.33	NA	2.88	3.88	2.63	0.00	5.13	3.75	1.83	0.00	6.17	4.41	5.93	0.62	2.63	2.00	0.952110	1.000000
N	alternative_acceptor		chr22	+	chr22:37678630-37678904;chr22:37678630-37683264;chr22:37678630-37688642;chr22:37678630-37680038	chr22:37678630-37688661		chr22:37678905-37680038;chr22:37680039-37683264;chr22:37683265-37688642;chr22:37688643-37688661	chr22:37680038-37680039;chr22:37683264-37683265;chr22:37688642-37688643;chr22:37688661-37688662		98.19	93.55	98.37	NA	100.00	NA	100.00	99.31	98.88	100.00	100.00	98.97	99.01	99.44	98.05	100.00	100.00	100.00	NA	99.42	100.00	100.00	100.00	100.00	94.74	98.70	98.52	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.01	99.37	0.36	0.283966	0.709013
K	intron_retention	INO80E	chr16	+	chr16:30012362-30012734				chr16:30012361-30012362;chr16:30012734-30012735		10.53	20.83	14.29	NA	10.34	NA	0.00	7.69	9.09	9.09	4.55	NA	5.41	10.00	9.52	5.56	3.92	NA	3.57	16.67	4.76	NA	21.74	NA	30.00	8.33	5.00	NA	8.70	NA	NA	10.00	10.00	NA	9.09	NA	7.71	10.00	2.29	0.554087	1.000000
N	cassette	SNX5	chr20	-	chr20:17933355-17936008;chr20:17932240-17937576;chr20:17932240-17936008	chr20:17932240-17934639,chr20:17933355-17934639;chr20:17934762-17937576,chr20:17934762-17936008		chr20:17934640-17934761			100.00	100.00	100.00	NA	100.00	NA	99.40	100.00	100.00	100.00	98.55	100.00	99.35	100.00	100.00	100.00	99.17	96.88	100.00	100.00	100.00	100.00	97.33	100.00	NA	100.00	100.00	90.91	100.00	NA	NA	95.45	100.00	100.00	97.70	100.00	100.00	100.00	0.00	0.178263	0.709176
K	intron_retention	IGFLR1	chr19	-	chr19:36232125-36233296				chr19:36232124-36232125;chr19:36233296-36233297		14.00	7.09	12.70	0.00	8.26	4.08	4.11	6.67	3.45	0.00	3.92	0.00	4.94	5.26	16.67	0.00	7.58	3.57	4.57	8.16	9.30	3.23	6.25	1.45	7.87	2.78	16.67	8.00	7.75	7.14	2.86	5.10	3.11	5.26	11.11	2.27	4.76	5.96	1.21	0.819432	1.000000
N	cassette	NADK	chr1	-	chr1:1693475-1711343	chr1:1693475-1696666;chr1:1696886-1711343		chr1:1696667-1696885			98.33	100.00	100.00	NA	NA	NA	98.40	98.35	98.40	100.00	97.14	100.00	100.00	99.72	99.43	100.00	100.00	97.67	NA	100.00	88.89	100.00	100.00	100.00	100.00	99.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.39	-0.61	0.358874	0.709176
N	jcn_only_AD	SCYL1	chr11	+	chr11:65305760-65305912;chr11:65305796-65305912;chr11:65305654-65305912	chr11:65305559-65305912					3.28	0.00	2.04	0.00	1.59	0.64	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	1.52	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.517140	0.754861
K	intron_retention		chr22	-	chr22:50965168-50966016				chr22:50965167-50965168;chr22:50966016-50966017		46.96	33.55	51.00	58.09	48.31	60.86	25.00	27.91	53.03	57.14	46.15	61.11	26.09	28.82	49.11	56.00	45.71	66.67	38.02	50.00	43.88	64.20	50.33	71.58	49.33	46.62	53.03	58.70	48.41	63.91	53.46	54.44	39.06	58.09	51.83	72.68	35.78	46.79	11.01	0.870625	1.000000
N	cassette	ARPC1B	chr7	+	chr7:98972405-98983324;chr7:98974198-98983324	chr7:98972405-98974960,chr7:98974198-98974960;chr7:98975063-98983324		chr7:98974961-98975062			4.89	5.52	5.54	1.52	5.74	0.00	4.21	4.00	5.09	3.43	3.71	3.29	4.41	3.61	5.47	4.18	3.53	4.27	2.90	2.64	2.90	2.43	1.91	3.38	3.33	3.77	3.44	3.46	4.36	6.11	3.40	2.66	3.35	3.33	2.03	3.66	3.78	3.69	-0.09	0.645163	0.869719
K	intron_retention	HLA-F	chr6	+	chr6:29693821-29694179				chr6:29693820-29693821;chr6:29694179-29694180		16.46	3.19	14.94	11.81	6.32	8.47	0.00	1.68	1.08	0.00	0.00	3.90	0.00	2.37	3.42	2.70	0.00	8.11	10.17	14.88	5.95	29.55	8.57	24.10	4.64	10.25	6.74	16.80	7.14	11.19	12.13	11.52	5.71	27.78	12.50	17.62	3.92	11.19	7.28	0.193482	1.000000
K	alternative_last_exon	GCA,ING5	chr2	+	chr2:163212992-163213361;chr2:163212992-163217255	chr2:163212992-163213267	chr2:163217256-163217608	chr2:163213268-163213415			68.21	40.00	71.31	33.33	38.64	28.57	77.65	79.70	80.00	78.87	79.63	83.05	76.09	80.00	79.78	81.82	74.51	81.08	31.43	67.67	46.15	68.42	69.49	77.78	17.95	72.36	62.72	63.49	59.52	59.23	70.18	69.23	33.93	65.31	67.31	75.00	36.97	71.27	34.31	0.045097	0.227559
K	intron_retention		chr1	+	chr1:28891347-28893805				chr1:28891346-28891347;chr1:28893805-28893806		2.63	0.00	4.26	0.00	0.00	5.00	0.00	5.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	5.88	0.00	5.88	0.00	0.00	2.56	0.00	2.50	0.00	0.00	2.50	2.78	0.00	5.13	2.63	0.00	1.31	1.31	0.767489	1.000000
N	alternative_donor	MLF2	chr12	-	chr12:6861221-6861450	chr12:6861221-6861299		chr12:6861300-6861450	chr12:6861450-6861451		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	RGS19	chr20	-	chr20:62705895-62708462;chr20:62705895-62710646	chr20:62705895-62707877;chr20:62708000-62710646,chr20:62708000-62708462		chr20:62707878-62707999			100.00	97.22	94.59	NA	100.00	NA	100.00	100.00	100.00	NA	95.83	NA	96.30	100.00	100.00	93.33	95.83	NA	NA	100.00	100.00	NA	97.96	NA	NA	92.31	93.75	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	98.61	100.00	1.39	0.837598	0.945387
N	coord_cassette	PIK3R5	chr17	-	chr17:8790539-8792455	chr17:8790539-8790837;chr17:8791001-8791487;chr17:8792209-8792455		chr17:8790838-8791000;chr17:8791488-8792208			87.50	100.00	92.86	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.74	NA	100.00	97.22	97.96	100.00	96.85	100.00	100.00	99.00	100.00	94.23	94.12	NA	97.99	96.68	97.31	100.00	96.79	-3.21	0.082960	0.643829
N	cassette	OSGEP	chr14	-	chr14:20915850-20916264	chr14:20915850-20916062;chr14:20916154-20916264		chr14:20916063-20916153			94.74	100.00	100.00	100.00	98.67	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.51	80.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	69.23	95.83	95.70	100.00	100.00	100.00	100.00	87.37	-12.63	0.167074	0.709176
N	alternative_donor		chr1	-	chr1:1337637-1337841;chr1:1337637-1337738;chr1:1337637-1341182	chr1:1337637-1341188		chr1:1337739-1337841;chr1:1337842-1341182;chr1:1341183-1341188	chr1:1337841-1337842;chr1:1341182-1341183;chr1:1341188-1341189		97.53	98.72	94.35	98.10	98.91	99.14	100.00	98.04	100.00	98.84	98.35	100.00	99.12	100.00	97.37	99.15	98.69	100.00	99.61	97.33	98.56	97.33	97.18	96.30	98.21	94.44	97.32	98.80	98.32	98.26	97.65	96.97	98.82	97.17	97.04	93.75	98.97	97.59	-1.38	0.085362	0.475124
K	intron_retention	CC2D1B	chr1	-	chr1:52818896-52819189				chr1:52818895-52818896;chr1:52819189-52819190		17.19	12.35	13.21	9.30	7.69	3.92	4.55	2.17	0.00	0.00	0.00	9.52	3.45	1.96	7.32	8.70	0.00	0.00	5.45	11.43	5.08	11.11	11.76	15.69	5.26	7.14	12.50	6.45	10.53	8.00	10.68	9.00	8.62	14.75	12.50	11.11	5.36	8.91	3.55	0.679595	1.000000
K	jcn_only_AA	LMBRD1	chr6	-	chr6:70410695-70411334	chr6:70410762-70411334		chr6:70410695-70410761	chr6:70410694-70410695		97.37	92.31	100.00	100.00	95.45	NA	98.65	96.30	96.83	100.00	100.00	98.11	100.00	100.00	100.00	100.00	97.33	100.00	NA	100.00	100.00	100.00	98.51	100.00	NA	96.92	100.00	100.00	100.00	100.00	100.00	99.05	100.00	100.00	100.00	100.00	99.33	98.69	-0.64	0.743795	0.885252
N	jcn_only_AA	AGAP3	chr7	+	chr7:150825772-150827290;chr7:150825772-150831486	chr7:150825772-150828158		chr7:150827291-150828158;chr7:150828159-150831486	chr7:150828158-150828159;chr7:150831486-150831487		0.00	0.00	0.00	4.00	0.00	NA	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	1.04	2.15	0.00	0.00	0.00	0.00	0.269813	0.663989
K	intron_retention		chr20	+	chr20:409234-409594				chr20:409233-409234;chr20:409594-409595		5.19	3.17	7.32	6.25	4.55	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	2.04	5.56	0.00	0.00	2.27	3.70	2.22	0.00	3.12	5.00	13.33	0.87	5.56	11.11	0.00	4.71	3.70	2.74	2.44	7.69	5.13	4.88	2.35	2.48	0.12	0.940833	1.000000
N	jcn_only_AA	INO80E	chr16	+	chr16:30008182-30012078;chr16:30008182-30009102;chr16:30008182-30012063	chr16:30008182-30010590		chr16:30009103-30010590;chr16:30010591-30012063;chr16:30012064-30012078	chr16:30010590-30010591;chr16:30012063-30012064;chr16:30012078-30012079		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.192611	0.663989
N	jcn_only_AA	PPP6R2,TTC38	chr22	+	chr22:50862044-50869601	chr22:50862044-50868373		chr22:50868374-50869601	chr22:50869601-50869602		0.00	0.00	5.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	LRCH4	chr7	-	chr7:100174401-100174895	chr7:100174401-100174524;chr7:100174629-100174895		chr7:100174525-100174628			100.00	100.00	100.00	NA	95.65	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	91.89	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_first_exon	AC009133.12,LMF1	chr16	-	chr16:29820455-29821355	chr16:29820455-29820880	chr16:29821356-29823306	chr16:29820881-29821028			3.57	2.38	2.86	0.00	1.24	0.00	4.59	7.14	3.57	5.26	4.73	6.25	4.96	7.69	3.33	3.03	5.15	8.33	0.94	5.26	2.50	3.12	2.56	0.00	0.88	0.00	3.33	2.78	2.10	7.69	13.64	12.50	0.94	2.33	2.41	8.00	1.66	6.20	4.54	0.106727	0.279216
N	jcn_only_AA		chr22	+	chr22:20937535-20937620	chr22:20937535-20937616		chr22:20937617-20937620	chr22:20937620-20937621		100.00	100.00	97.70	100.00	96.43	NA	100.00	100.00	100.00	97.62	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	98.02	100.00	100.00	95.59	99.09	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	TMEM110,TMEM110-MUSTN1	chr3	-	chr3:52881565-52883807;chr3:52878958-52883807;chr3:52883231-52883807	chr3:52881568-52883807		chr3:52878958-52881564;chr3:52881565-52881567;chr3:52881568-52883230	chr3:52878957-52878958;chr3:52881564-52881565;chr3:52881567-52881568		0.00	40.00	NA	NA	NA	20.00	8.33	3.57	6.15	12.50	13.79	3.90	10.00	6.06	3.57	9.52	3.85	8.82	NA	6.45	26.67	NA	0.00	4.76	NA	0.00	NA	0.00	NA	6.82	8.82	NA	23.08	9.09	NA	4.08	16.54	4.81	-11.72	0.112066	0.663989
K	intron_retention		chr4	+	chr4:89425567-89425645				chr4:89425566-89425567;chr4:89425645-89425646		5.96	0.00	5.71	6.67	NA	3.33	0.00	0.53	0.40	0.00	NA	0.42	0.00	0.64	1.21	3.45	NA	0.27	NA	4.65	6.82	12.50	NA	6.91	NA	4.72	2.44	7.10	NA	1.87	7.84	7.95	0.00	9.92	NA	5.92	0.00	4.69	4.69	0.041272	1.000000
K	intron_retention	ZBTB48	chr1	+	chr1:6648905-6648975				chr1:6648904-6648905;chr1:6648975-6648976		5.00	6.40	3.28	3.85	3.19	5.77	0.00	NA	0.00	NA	5.26	NA	0.00	NA	0.00	0.00	0.00	NA	3.12	6.67	5.08	0.00	5.08	0.00	2.08	5.88	0.00	0.00	4.76	6.67	10.00	7.58	6.10	3.57	0.00	0.00	2.60	6.28	3.68	0.326193	1.000000
K	intron_retention	ILK	chr11	+	chr11:6630199-6630301				chr11:6630198-6630199;chr11:6630301-6630302		3.64	6.90	6.80	4.00	3.75	0.00	0.00	0.00	0.00	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	5.15	2.27	4.26	4.93	0.00	0.00	2.44	8.20	2.17	3.70	0.00	3.95	4.44	2.78	5.43	6.60	4.90	1.39	3.04	1.65	0.889293	1.000000
N	jcn_only_AD	COA5	chr2	-	chr2:99220655-99224540;chr2:99220655-99224725	chr2:99220655-99224769		chr2:99224541-99224725;chr2:99224726-99224769	chr2:99224725-99224726;chr2:99224769-99224770		100.00	100.00	100.00	NA	95.65	100.00	94.44	100.00	93.33	100.00	96.00	100.00	94.59	NA	91.67	100.00	100.00	NA	100.00	93.75	100.00	NA	96.00	100.00	100.00	92.86	100.00	NA	94.74	100.00	90.48	97.06	100.00	NA	100.00	100.00	100.00	93.75	-6.25	0.265076	0.657607
K	intron_retention		chr10	+	chr10:104181265-104181543				chr10:104181264-104181265;chr10:104181543-104181544		19.61	26.32	22.00	24.14	36.59	22.45	20.69	18.52	15.00	15.79	14.29	0.00	12.82	10.34	9.76	20.69	18.75	NA	25.37	26.47	22.54	40.00	45.45	43.75	27.87	18.42	25.00	29.41	40.00	20.00	26.83	25.00	25.42	30.00	34.78	18.18	25.40	19.06	-6.33	0.818855	1.000000
K	intron_retention		chr1	+	chr1:2492154-2492932				chr1:2492153-2492154;chr1:2492932-2492933		87.50	40.74	68.18	33.33	27.59	NA	NA	NA	NA	NA	NA	NA	53.33	NA	71.43	60.00	NA	NA	26.67	54.17	30.77	71.43	51.06	59.38	39.29	76.47	75.00	57.14	38.10	64.71	45.00	53.33	30.77	56.82	43.24	59.65	39.29	65.32	26.03	0.127299	1.000000
N	alternative_acceptor	HDAC10,MAPK12	chr22	-	chr22:50684195-50684338;chr22:50684166-50684338	chr22:50684257-50684338		chr22:50684166-50684194;chr22:50684195-50684256	chr22:50684165-50684166;chr22:50684194-50684195		89.66	93.62	100.00	92.86	87.50	93.55	91.67	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	94.55	100.00	92.31	NA	90.91	NA	87.91	88.89	100.00	100.00	93.75	100.00	100.00	96.00	92.19	NA	85.71	89.47	92.91	94.83	1.92	0.723859	0.896493
K	alternative_acceptor	BRD2	chr6	+	chr6:32944714-32945193;chr6:32944714-32945218	chr6:32944714-32945036		chr6:32945037-32945193;chr6:32945194-32945218	chr6:32945193-32945194;chr6:32945218-32945219		7.14	0.00	5.49	6.67	9.09	NA	4.00	4.44	4.55	3.41	4.00	1.71	3.85	6.80	5.88	5.10	3.60	0.00	NA	4.79	3.33	4.17	5.99	3.94	NA	5.44	6.77	6.49	10.29	5.80	2.30	3.15	0.00	4.52	5.00	3.64	1.93	5.12	3.19	0.059928	0.574109
K	cassette	CD300A	chr17	+	chr17:72462883-72470670	chr17:72462883-72469674;chr17:72470014-72470670		chr17:72469675-72470013			84.45	91.55	84.21	NA	97.44	NA	98.77	93.33	93.75	93.33	95.65	85.00	96.90	96.55	96.23	92.50	92.26	88.89	100.00	87.84	91.30	100.00	88.14	NA	NA	83.61	91.03	100.00	100.00	NA	81.82	100.00	95.00	85.71	92.31	85.71	96.90	86.15	-10.75	0.016279	0.372211
K	intron_retention		chr6	-	chr6:79911444-79911992				chr6:79911443-79911444;chr6:79911992-79911993		NA	20.59	28.57	3.85	13.73	7.14	4.26	0.00	5.13	0.00	3.12	0.00	5.45	0.00	6.25	0.00	1.67	0.00	10.87	NA	16.67	0.00	10.20	10.00	17.54	8.33	15.91	0.00	5.97	1.61	0.00	21.62	19.05	10.00	10.00	5.13	14.20	0.00	-14.20	0.614439	1.000000
N	coord_cassette	IDH3B	chr20	-	chr20:2640232-2640908	chr20:2640232-2640344;chr20:2640440-2640675;chr20:2640823-2640908		chr20:2640345-2640439;chr20:2640676-2640822			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	96.08	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	92.31	100.00	100.00	100.00	100.00	0.00	0.211842	0.643829
N	alternative_acceptor	UBE2M	chr19	-	chr19:59068162-59068258;chr19:59068195-59068258	chr19:59068158-59068258		chr19:59068158-59068161;chr19:59068162-59068194	chr19:59068157-59068158;chr19:59068161-59068162		98.37	100.00	98.98	100.00	97.84	100.00	100.00	100.00	98.98	100.00	100.00	98.41	98.21	98.91	99.13	98.70	98.64	98.36	100.00	96.67	97.39	98.46	98.10	97.44	100.00	96.43	98.88	100.00	100.00	95.38	94.32	95.89	97.92	99.10	100.00	96.59	100.00	97.52	-2.48	0.078266	0.585944
N	jcn_only_AA	DDX23	chr12	-	chr12:49226353-49227059;chr12:49226380-49227059	chr12:49226357-49227059		chr12:49226353-49226356;chr12:49226357-49226379	chr12:49226352-49226353;chr12:49226356-49226357		93.18	100.00	98.46	NA	100.00	NA	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.78	NA	100.00	100.00	100.00	100.00	98.08	100.00	97.18	100.00	100.00	100.00	97.14	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AD	SIPA1	chr11	+	chr11:65412298-65412425;chr11:65410075-65412425	chr11:65410111-65412425		chr11:65410075-65410110;chr11:65410111-65412297	chr11:65410074-65410075;chr11:65410110-65410111		100.00	100.00	100.00	NA	NA	NA	96.00	100.00	96.67	100.00	100.00	100.00	100.00	97.50	98.28	100.00	100.00	100.00	NA	97.44	100.00	NA	96.88	100.00	100.00	94.12	100.00	NA	100.00	100.00	96.67	100.00	100.00	NA	95.45	100.00	100.00	97.47	-2.53	0.223521	0.657607
K	intron_retention	CD36	chr7	+	chr7:80303464-80305699				chr7:80303463-80303464;chr7:80305699-80305700		21.43	43.33	30.77	66.67	48.42	86.36	10.37	9.20	0.00	8.57	11.49	9.57	23.83	17.39	NA	25.31	22.05	26.70	72.32	42.86	11.76	43.75	41.34	47.92	72.00	16.67	17.19	21.71	26.22	32.60	26.92	28.00	59.14	25.00	29.88	22.40	51.23	19.41	-31.82	0.241497	1.000000
K	intron_retention	NAPRT	chr8	-	chr8:144660114-144660262				chr8:144660113-144660114;chr8:144660262-144660263		36.00	37.84	33.33	NA	58.33	NA	7.69	0.00	0.00	0.00	0.00	0.00	7.58	0.00	13.64	0.00	4.88	0.00	30.00	27.78	17.65	NA	36.84	27.27	68.18	35.71	38.89	NA	29.41	NA	33.33	47.37	33.33	40.00	27.27	25.00	31.66	30.55	-1.11	0.764974	1.000000
K	intron_retention	HNRNPM	chr19	+	chr19:8530247-8530363				chr19:8530246-8530247;chr19:8530363-8530364		18.18	29.41	27.35	41.18	25.93	NA	26.88	34.85	25.40	35.94	35.65	34.58	31.01	43.33	43.48	36.90	39.69	39.62	16.67	16.00	29.41	23.96	29.79	32.64	NA	29.73	30.49	39.36	46.05	32.34	10.26	14.94	NA	24.14	24.53	25.10	28.14	23.95	-4.19	0.998374	1.000000
N	jcn_only_AA	SRRM2	chr16	+	chr16:2819286-2820352;chr16:2819286-2820361;chr16:2819286-2819628	chr16:2819286-2819862		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		2.96	3.24	3.87	4.35	1.83	3.70	1.59	0.00	1.10	0.00	0.00	0.00	3.61	3.45	3.26	2.94	4.12	11.54	1.90	0.00	0.00	0.00	2.27	6.45	0.00	2.99	2.88	11.25	9.02	10.81	3.70	2.19	0.00	3.00	5.22	9.30	1.75	2.98	1.23	0.635469	0.838192
K	jcn_only_AD	AURKAIP1	chr1	-	chr1:1310171-1310533;chr1:1310171-1310454	chr1:1310171-1310376		chr1:1310377-1310454;chr1:1310455-1310533	chr1:1310454-1310455;chr1:1310533-1310534		24.39	29.49	18.75	41.67	36.07	38.24	40.35	40.74	39.22	40.43	30.61	37.93	32.14	21.21	31.91	36.00	32.76	28.57	27.59	19.15	27.78	31.03	26.92	43.75	45.76	18.75	25.58	40.43	36.36	35.71	33.33	23.44	27.40	38.10	18.92	20.59	30.81	22.80	-8.01	0.146390	0.657607
N	alternative_donor	DPP7,RPL35	chr9	-	chr9:140006683-140007200;chr9:140006683-140007257;chr9:140006683-140007196	chr9:140006683-140007171		chr9:140007172-140007196;chr9:140007197-140007200;chr9:140007201-140007257	chr9:140007196-140007197;chr9:140007200-140007201;chr9:140007257-140007258		6.25	3.12	10.26	4.29	3.57	1.19	0.00	0.00	0.00	0.00	0.00	0.00	1.39	0.00	5.56	0.00	0.00	0.00	2.78	4.55	2.15	5.88	4.92	2.17	2.76	3.03	6.98	2.86	3.39	2.56	2.13	5.26	2.29	3.23	4.17	2.20	2.52	2.58	0.06	0.607822	0.815331
N	jcn_only_AD	WDFY2	chr13	+	chr13:52325552-52329493;chr13:52327056-52329493	chr13:52328534-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	4.35	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	6.67	12.50	NA	10.00	NA	NA	0.00	0.00	0.00	0.186315	0.657607
K	intron_retention	PBX2	chr6	-	chr6:32156282-32156499				chr6:32156281-32156282;chr6:32156499-32156500		21.21	40.00	30.51	NA	NA	NA	2.08	0.00	2.00	0.00	4.00	0.00	6.52	0.00	6.90	4.17	2.13	6.67	NA	18.18	NA	NA	16.67	23.53	37.84	17.95	23.26	NA	14.29	NA	21.43	23.81	NA	42.11	25.81	30.30	22.18	18.06	-4.12	0.937282	1.000000
K	intron_retention	BCL3	chr19	+	chr19:45261671-45261980				chr19:45261670-45261671;chr19:45261980-45261981		5.52	2.08	4.81	2.58	1.37	2.96	0.00	0.00	0.00	0.18	0.97	0.53	0.00	1.16	1.55	1.45	1.19	0.53	3.57	4.67	4.49	4.31	4.17	3.49	6.25	2.20	4.31	4.84	1.85	3.38	5.48	3.92	9.09	7.06	6.67	4.74	2.83	3.44	0.61	0.980656	1.000000
N	alternative_last_exon	ADCY7	chr16	+	chr16:28970422-28977495;chr16:28970422-28986421	chr16:28970422-28975025	chr16:28986422-28986713	chr16:28975026-28978418			64.29	86.96	80.65	90.00	79.17	92.86	78.95	76.00	81.25	70.59	71.43	69.23	82.14	84.00	91.89	84.21	47.37	81.82	92.86	87.50	89.47	64.29	80.00	75.00	68.42	73.91	72.00	75.00	81.82	85.00	81.25	68.00	70.59	80.00	76.19	84.00	80.55	78.62	-1.92	0.682141	0.803027
N	jcn_only_AA	SIRT6	chr19	-	chr19:4175109-4175676;chr19:4175149-4175676	chr19:4175211-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		8.57	0.00	0.00	0.00	9.09	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.04	7.14	5.13	11.11	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	6.06	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.962704	0.987074
K	intron_retention	IFI44	chr1	+	chr1:79125169-79126238				chr1:79125168-79125169;chr1:79126238-79126239		1.94	0.00	5.77	0.00	0.00	0.00	2.44	2.22	1.88	2.22	0.00	0.62	5.88	1.66	7.34	5.71	0.00	1.14	0.00	3.27	0.00	2.56	0.00	3.77	0.00	3.97	1.43	2.46	0.00	0.50	1.91	1.27	0.00	12.84	5.26	5.32	0.00	2.08	2.08	0.544445	1.000000
N	jcn_only_AA	UBL7	chr15	-	chr15:74740929-74741526;chr15:74740942-74741526	chr15:74740900-74741526		chr15:74740900-74740928;chr15:74740929-74740941	chr15:74740899-74740900;chr15:74740928-74740929		0.00	11.86	12.00	3.45	7.95	6.98	7.69	7.69	8.11	12.12	9.62	6.25	12.90	9.52	2.44	10.00	6.67	9.68	16.49	6.25	10.81	30.00	10.64	11.11	10.64	6.45	8.70	0.00	9.52	11.76	4.35	7.27	12.93	0.00	7.89	9.30	12.38	6.35	-6.03	0.005260	0.450187
K	intron_retention	TINF2	chr14	-	chr14:24709537-24709624				chr14:24709536-24709537;chr14:24709624-24709625		87.13	69.77	86.67	91.11	84.62	80.56	88.46	88.11	87.36	82.35	86.15	87.74	86.96	89.58	84.78	85.53	82.09	86.75	69.57	83.18	72.22	88.33	89.66	92.86	NA	88.08	87.04	89.83	92.77	88.35	89.01	90.28	76.92	91.49	92.42	89.09	76.92	88.09	11.17	0.172440	1.000000
N	jcn_only_AA	PRR14	chr16	+	chr16:30666742-30666834;chr16:30666742-30666822	chr16:30666742-30666848		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		18.37	22.58	9.09	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.98	15.09	7.02	8.70	0.00	0.00	0.00	8.57	6.25	0.00	5.77	3.33	15.87	13.19	8.62	13.95	4.44	9.30	4.31	11.83	7.52	0.762875	0.895110
K	cassette	C6orf48	chr6	+	chr6:31803229-31805012	chr6:31803229-31804071;chr6:31804295-31805012		chr6:31804072-31804294			11.11	7.06	12.50	10.34	6.02	10.53	6.82	16.00	17.28	4.55	6.67	5.00	5.32	10.00	17.44	6.85	4.84	7.14	7.32	20.00	16.67	8.82	5.00	5.00	3.12	15.38	13.11	7.89	5.88	9.38	18.18	18.37	7.55	7.32	5.77	3.92	6.94	15.69	8.75	0.001469	0.130514
N	alternative_last_exon	CYTH1	chr17	-	chr17:76672252-76688498	chr17:76677125-76688498	chr17:76670130-76672251	chr17:76677053-76677124			97.70	66.67	99.12	38.46	66.67	8.70	98.55	99.43	99.10	99.04	98.85	100.00	98.33	99.46	99.13	98.85	99.18	99.37	15.79	98.75	76.92	97.50	98.33	98.73	44.44	99.21	98.85	97.37	96.55	96.15	96.36	99.01	41.67	96.63	98.55	99.28	55.55	98.98	43.42	0.039416	0.227559
N	alternative_acceptor	FBXL15	chr10	+	chr10:104181265-104181870;chr10:104181265-104181543	chr10:104181265-104181843		chr10:104181544-104181843;chr10:104181844-104181870	chr10:104181843-104181844;chr10:104181870-104181871		0.00	0.00	0.00	0.00	4.92	1.32	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	6.25	7.55	0.00	0.96	0.00	0.00	0.00	2.13	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.175759	0.660713
N	alternative_acceptor	ATP6V0A1	chr17	+	chr17:40666479-40666561;chr17:40666479-40673044	chr17:40666479-40668789		chr17:40666562-40668789;chr17:40668790-40673044	chr17:40668789-40668790;chr17:40673044-40673045		21.95	19.23	25.64	NA	6.67	NA	3.03	6.90	0.00	0.00	1.33	NA	5.71	9.09	NA	6.90	2.60	NA	NA	19.35	NA	9.09	10.64	NA	28.57	27.27	13.16	20.00	2.63	NA	25.00	15.00	NA	18.18	22.03	15.00	12.47	20.65	8.18	0.575789	0.839239
N	jcn_only_AA	LRP1,PRR13	chr12	+	chr12:53836518-53837312;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837174		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		83.52	87.50	85.89	81.82	83.73	81.25	82.78	80.83	80.95	87.27	85.47	86.22	83.54	85.00	86.57	85.48	89.08	85.85	85.48	88.45	81.18	86.26	92.53	91.30	100.00	84.82	87.42	85.51	86.07	83.51	84.79	88.83	84.38	83.15	87.85	85.38	84.93	84.81	-0.12	0.370615	0.663989
K	cassette	CD82	chr11	+	chr11:44639916-44640598	chr11:44639916-44640189;chr11:44640274-44640598		chr11:44640190-44640273			96.98	96.23	97.29	100.00	96.88	100.00	100.00	99.47	99.38	98.22	98.31	99.12	97.80	99.38	99.16	97.32	96.89	96.57	91.30	97.60	99.42	97.35	95.08	97.37	100.00	99.74	99.00	97.35	98.21	97.01	98.46	97.66	96.43	97.83	97.48	97.87	97.12	98.92	1.80	0.281486	0.709176
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49950002-49950280;chr19:49950052-49950280;chr19:49949853-49950280	chr19:49949952-49950280		chr19:49949853-49949951;chr19:49949952-49950001;chr19:49950002-49950051	chr19:49949852-49949853;chr19:49949951-49949952;chr19:49950001-49950002		96.77	95.58	92.86	100.00	91.84	91.18	100.00	100.00	95.65	100.00	100.00	92.31	92.59	100.00	92.00	93.33	94.12	NA	88.78	83.33	93.42	90.00	95.24	NA	98.17	91.30	92.68	100.00	91.30	88.89	87.80	89.80	92.38	100.00	100.00	100.00	94.09	94.03	-0.05	0.683278	0.881289
K	cassette	LSM1	chr8	-	chr8:38021359-38029482	chr8:38021359-38027319;chr8:38027436-38029482		chr8:38027320-38027435			80.00	82.35	79.17	85.71	85.42	70.83	83.33	93.55	87.50	84.72	90.00	79.17	79.17	80.00	87.23	82.81	88.00	83.33	81.58	80.00	75.86	84.21	86.67	83.78	46.15	75.00	78.57	85.71	92.73	73.08	56.82	66.67	66.67	75.51	80.65	67.80	80.38	80.00	-0.38	0.584577	0.842011
K	intron_retention	SRPR	chr11	-	chr11:126137231-126137443				chr11:126137230-126137231;chr11:126137443-126137444		9.09	47.37	8.77	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	NA	13.04	NA	5.00	6.67	12.00	100.00	4.17	7.32	4.00	0.00	0.00	20.00	14.29	80.00	8.82	6.82	7.14	47.37	6.63	-40.74	0.523831	1.000000
N	alternative_donor	GGA1	chr22	+	chr22:38013005-38014454;chr22:38013375-38014454	chr22:38013056-38014454		chr22:38013005-38013055;chr22:38013056-38013374	chr22:38013004-38013005;chr22:38013055-38013056		0.00	0.00	1.59	NA	0.00	NA	2.27	0.00	0.00	0.00	2.22	0.00	1.69	0.00	0.00	0.00	2.00	NA	NA	0.00	0.00	0.00	3.33	0.00	0.00	3.23	2.17	5.00	2.94	NA	0.00	2.13	NA	1.89	1.52	3.85	0.84	0.00	-0.84	0.586865	0.799662
K	intron_retention	TRPT1	chr11	-	chr11:63991440-63991571				chr11:63991439-63991440;chr11:63991571-63991572		0.00	5.00	6.12	0.00	8.82	7.69	NA	NA	0.00	NA	NA	NA	7.14	NA	0.00	NA	NA	NA	11.29	0.00	7.50	NA	5.88	NA	13.51	15.38	11.90	NA	18.18	NA	15.00	16.28	7.35	0.00	0.00	15.00	7.35	7.50	0.15	0.647354	1.000000
N	alternative_donor	PCBP1-AS1,RNF149	chr2	-	chr2:101902640-101905434	chr2:101902640-101903944		chr2:101903945-101905434	chr2:101905434-101905435		2.83	8.33	4.57	0.00	0.00	0.00	1.59	1.26	0.83	1.89	1.64	0.52	2.78	1.18	2.88	2.04	1.85	0.80	NA	2.53	2.17	1.82	4.08	1.82	NA	2.31	2.46	2.78	2.50	0.90	1.61	1.99	8.33	4.82	5.66	2.08	5.55	1.96	-3.59	0.161439	0.563271
K	cassette	MCOLN1	chr19	+	chr19:7591813-7592749	chr19:7591813-7592405;chr19:7592515-7592749		chr19:7592406-7592514			100.00	91.67	85.00	NA	83.33	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.86	100.00	NA	100.00	94.44	100.00	100.00	100.00	92.31	86.67	80.00	89.47	92.86	100.00	95.84	100.00	4.16	0.311914	0.709176
K	alternative_donor	C14orf159	chr14	+	chr14:91655515-91662718	chr14:91656152-91662718		chr14:91655515-91656151	chr14:91655514-91655515		0.00	3.57	9.09	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.56	0.00	0.00	0.00	0.00	6.67	NA	NA	0.00	NA	0.00	7.69	NA	NA	0.00	NA	NA	5.88	0.00	0.00	0.00	0.00	0.00	3.33	3.33	0.248570	0.619149
N	jcn_only_AD		chr8	-	chr8:145650384-145651043;chr8:145650384-145650492	chr8:145650384-145651065		chr8:145650493-145651043;chr8:145651044-145651065	chr8:145651043-145651044;chr8:145651065-145651066		93.75	100.00	95.24	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	91.67	100.00	NA	96.30	100.00	100.00	100.00	96.77	NA	100.00	100.00	100.00	96.88	-3.12	0.245285	0.657607
K	intron_retention	CPNE1	chr20	-	chr20:34219096-34219189				chr20:34219095-34219096;chr20:34219189-34219190		0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	7.69	1.39	0.00	4.55	2.78	1.75	0.00	0.00	0.00	0.483670	1.000000
K	intron_retention	ARFGAP1	chr20	+	chr20:61908004-61908556				chr20:61908003-61908004;chr20:61908556-61908557		0.00	NA	2.78	NA	0.00	NA	5.00	NA	0.00	0.00	5.88	NA	8.00	0.00	0.00	3.45	0.00	NA	0.00	0.00	NA	7.69	5.00	9.09	0.00	0.00	0.00	0.00	14.29	NA	0.00	0.00	NA	0.00	0.00	4.26	2.50	0.00	-2.50	0.503426	1.000000
N	cassette	LGALS3	chr14	+	chr14:55596019-55604762;chr14:55590821-55604762;chr14:55596366-55604762;chr14:55596835-55604762	chr14:55590821-55604087,chr14:55596019-55604087,chr14:55596366-55604087,chr14:55596835-55604087;chr14:55604110-55604762		chr14:55604088-55604109			95.94	100.00	98.53	98.15	98.04	100.00	98.68	97.50	95.35	97.76	97.57	97.71	98.55	97.60	98.87	98.53	97.19	98.26	98.06	94.33	97.02	98.31	97.93	98.51	100.00	96.21	97.17	98.74	97.91	99.02	92.09	90.83	94.68	98.56	97.51	97.69	98.62	96.07	-2.54	0.042971	0.519043
N	jcn_only_AA	FGD2	chr6	+	chr6:36990147-36992992;chr6:36990147-36990971;chr6:36990147-36990964;chr6:36990147-36993567	chr6:36990147-36992548		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		3.05	0.00	NA	NA	0.00	NA	2.56	3.28	0.00	0.00	0.00	0.00	3.12	4.82	0.00	0.00	0.00	0.00	NA	5.32	NA	NA	0.00	0.00	0.00	4.26	NA	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	2.48	0.00	4.54	4.54	0.006395	0.450187
N	alternative_donor	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001969-30002104;chr16:30001919-30002104	chr16:30001127-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		81.82	88.00	71.43	NA	NA	NA	100.00	NA	NA	NA	100.00	NA	93.75	NA	NA	NA	100.00	NA	NA	77.78	90.00	NA	72.73	NA	100.00	84.62	84.00	NA	75.00	NA	100.00	80.00	NA	75.00	80.77	75.00	96.88	83.22	-13.66	0.158943	0.563271
K	jcn_only_AA	GPBP1	chr5	+	chr5:56543043-56545280	chr5:56543043-56545235		chr5:56545236-56545280	chr5:56545280-56545281		97.53	100.00	94.12	97.06	94.29	92.86	100.00	98.17	96.21	91.11	90.24	95.21	96.55	96.19	95.27	94.55	92.31	96.33	100.00	94.44	100.00	92.68	91.67	93.97	NA	97.84	95.24	94.34	92.86	93.75	94.74	92.05	100.00	95.52	88.64	95.93	100.00	96.86	-3.14	0.016432	0.537091
N	jcn_only_AA	CCS,TSPAN32	chr11	+	chr11:66368021-66372809;chr11:66368021-66372628	chr11:66368021-66372624		chr11:66372625-66372628;chr11:66372629-66372809	chr11:66372628-66372629;chr11:66372809-66372810		5.17	4.85	8.51	0.00	0.00	0.00	0.00	0.00	3.70	0.00	3.85	0.00	0.00	10.00	0.00	0.00	0.00	NA	0.00	4.17	2.38	0.00	2.94	NA	0.00	6.25	4.23	12.50	4.26	0.00	0.00	3.45	2.61	0.00	0.00	6.90	0.00	4.67	4.67	0.129925	0.663989
K	jcn_only_AA	PRKCSH	chr19	+	chr19:11558434-11558537	chr19:11558434-11558507		chr19:11558508-11558537	chr19:11558537-11558538		34.62	44.90	29.73	31.25	42.31	45.00	54.29	47.83	54.55	62.96	55.17	62.50	54.39	46.67	57.89	44.00	45.45	70.00	36.21	33.33	43.90	39.13	44.00	33.33	45.00	35.71	43.33	62.50	51.28	36.84	41.51	39.02	40.00	43.48	40.62	45.45	44.95	38.61	-6.34	0.171863	0.663989
K	alternative_first_exon	PEX16	chr11	-	chr11:45939045-45939138,chr11:45939045-45939254,chr11:45939045-45939324;chr11:45939045-45939672	chr11:45939045-45939250	chr11:45939673-45940363	chr11:45939251-45939606			77.78	81.82	73.68	81.82	100.00	NA	93.75	94.12	89.47	100.00	85.71	90.00	91.30	88.24	95.65	95.83	94.44	NA	81.82	76.47	95.00	83.33	85.71	NA	NA	85.71	89.47	100.00	90.00	85.71	81.82	75.00	90.91	78.57	69.23	82.35	90.91	83.76	-7.15	0.323032	0.530527
K	intron_retention	WDR6	chr3	+	chr3:49051933-49052032				chr3:49051932-49051933;chr3:49052032-49052033		4.55	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.38	0.00	0.00	NA	12.50	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.485226	1.000000
N	cassette	RBX1	chr22	+	chr22:41347481-41360050;chr22:41347481-41363802	chr22:41347481-41349558;chr22:41349638-41360050,chr22:41349638-41363802		chr22:41349559-41349637			95.04	89.39	94.40	97.20	96.11	93.75	95.89	98.05	98.87	95.00	100.00	94.74	93.75	100.00	100.00	95.70	100.00	92.65	93.05	97.81	96.45	93.75	94.89	92.56	89.13	97.30	99.15	97.89	100.00	95.05	93.38	94.38	91.53	100.00	97.08	95.68	92.29	97.56	5.27	0.007646	0.267181
K	intron_retention	TAOK3	chr12	-	chr12:118587883-118588898				chr12:118587882-118587883;chr12:118588898-118588899		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.51	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.11	94.59	100.00	97.44	100.00	100.00	0.00	0.533372	1.000000
K	intron_retention	DDX39A	chr19	-	chr19:14520458-14520553				chr19:14520457-14520458;chr19:14520553-14520554		3.92	7.00	1.96	1.52	1.16	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	0.00	5.56	2.99	0.96	0.00	0.00	0.00	2.27	1.89	0.00	1.75	13.92	5.00	5.10	2.47	3.45	0.00	1.33	0.00	-1.33	0.975073	1.000000
N	cassette	AGAP3	chr7	+	chr7:150831656-150837065;chr7:150831656-150838984	chr7:150831656-150835229;chr7:150835401-150837065,chr7:150835401-150838984		chr7:150835230-150835400			66.20	54.44	60.80	78.79	68.81	NA	82.69	83.33	71.93	86.76	83.33	85.71	82.61	82.35	72.22	85.88	84.38	86.67	65.52	65.38	57.38	76.27	73.33	71.43	65.85	76.32	54.88	67.65	78.82	85.71	64.10	59.57	40.48	81.36	71.76	77.36	65.69	71.26	5.57	0.341890	0.709176
N	jcn_only_AD	INPPL1	chr11	+	chr11:71946450-71946718	chr11:71946496-71946718		chr11:71946450-71946495	chr11:71946449-71946450		96.25	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.36	100.00	100.00	97.22	NA	100.00	100.00	100.00	95.24	100.00	100.00	94.74	100.00	96.25	NA	100.00	NA	97.56	98.70	100.00	97.83	98.44	100.00	100.00	98.78	-1.22	0.525807	0.754861
N	cassette	SHKBP1	chr19	+	chr19:41094686-41096635;chr19:41094686-41096638;chr19:41092851-41096635	chr19:41094686-41094987,chr19:41092851-41094987;chr19:41095085-41096635,chr19:41095085-41096638		chr19:41094988-41095084			100.00	94.55	96.49	100.00	96.97	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	98.36	98.53	95.24	95.45	100.00	100.00	98.61	97.14	100.00	100.00	100.00	100.00	100.00	0.00	0.299512	0.709176
K	jcn_only_AA	NADSYN1	chr11	+	chr11:71189516-71191800	chr11:71189516-71191264					0.00	14.81	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	8.33	6.67	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.590909	0.811418
K	cassette	SIRT7	chr17	-	chr17:79873558-79875705	chr17:79873558-79875490;chr17:79875596-79875705		chr17:79875491-79875595			91.67	90.48	92.50	NA	100.00	NA	94.44	94.12	100.00	87.50	94.74	NA	100.00	100.00	100.00	100.00	100.00	NA	92.86	100.00	100.00	91.30	94.74	100.00	100.00	92.59	96.00	90.91	93.75	100.00	91.18	100.00	95.45	100.00	91.30	92.86	94.94	93.36	-1.59	0.793999	0.936947
N	jcn_only_AA	PARVG	chr22	+	chr22:44587985-44589680;chr22:44587985-44588837;chr22:44587985-44589685	chr22:44587985-44588976		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		0.00	2.04	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	1.19	6.06	0.00	0.00	1.10	0.00	0.00	1.61	1.21	0.00	0.00	0.00	1.20	0.00	-1.20	0.935015	0.978889
N	jcn_only_AA	SRRM2	chr16	+	chr16:2820467-2820610;chr16:2820467-2820604	chr16:2820467-2820607		chr16:2820605-2820607;chr16:2820608-2820610	chr16:2820607-2820608;chr16:2820610-2820611		0.57	1.22	1.04	0.00	0.94	0.86	0.00	4.00	3.30	2.74	4.26	0.00	2.08	0.00	1.69	1.25	0.81	3.57	4.29	1.05	0.00	0.97	1.68	2.04	4.32	3.96	5.45	0.00	3.12	2.80	2.14	1.43	2.04	0.00	1.45	2.05	2.06	1.60	-0.46	0.715196	0.875250
N	jcn_only_AD	FBXW5,ZDHHC21	chr9	-	chr9:139836137-139837800;chr9:139836137-139836497;chr9:139836137-139836551	chr9:139836137-139836206					0.00	0.00	3.61	7.41	5.13	0.00	1.00	1.11	1.06	2.17	3.39	1.82	0.00	0.00	3.74	2.47	0.79	0.00	5.56	3.70	4.60	0.00	7.32	3.85	0.00	1.59	3.03	4.88	3.77	4.88	5.97	0.00	2.94	5.56	6.82	3.12	0.50	1.35	0.85	0.726690	0.858549
N	jcn_only_AD	IGFLR1	chr19	-	chr19:36232125-36233296;chr19:36232125-36233167;chr19:36232125-36232383	chr19:36232125-36233290		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		12.24	5.07	9.84	8.51	11.72	9.26	6.58	12.50	9.38	2.94	7.55	18.18	6.90	5.00	11.76	9.09	7.46	0.00	7.84	8.16	4.88	7.69	5.70	5.41	6.82	0.00	9.33	6.12	7.09	9.59	2.86	10.38	7.32	6.41	7.69	6.38	6.86	6.58	-0.28	0.986153	0.994297
N	alternative_donor	CXorf38	chrX	-	chrX:40490026-40495784	chrX:40490026-40491033		chrX:40491034-40495784	chrX:40495784-40495785		5.00	0.00	5.26	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	3.57	3.03	0.00	0.00	0.00	0.00	6.25	0.00	NA	9.09	9.09	NA	7.14	0.00	0.00	NA	0.00	5.00	5.26	0.00	4.35	4.00	7.69	0.00	5.00	5.00	0.000229	0.049065
N	alternative_acceptor		chr20	+	chr20:30749169-30754775	chr20:30749169-30753097		chr20:30753098-30754775	chr20:30754775-30754776		100.00	100.00	99.45	100.00	100.00	100.00	98.36	98.53	100.00	100.00	100.00	90.48	100.00	100.00	97.96	94.87	100.00	100.00	100.00	98.44	94.67	100.00	100.00	100.00	100.00	100.00	98.70	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594097	0.844559
N	alternative_donor	ACADVL	chr17	+	chr17:7127872-7127960;chr17:7127868-7127960	chr17:7127876-7127960		chr17:7127868-7127871;chr17:7127872-7127875	chr17:7127867-7127868;chr17:7127871-7127872		3.41	1.91	2.38	2.56	4.76	2.04	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.78	1.82	2.83	2.50	3.74	5.13	1.05	0.00	5.41	3.57	3.91	0.00	3.45	2.70	0.83	3.85	3.45	1.67	0.80	0.91	0.11	0.392271	0.658590
K	coord_cassette	CALML4	chr15	-	chr15:68489967-68497582	chr15:68489967-68491878;chr15:68492020-68497458;chr15:68497490-68497582		chr15:68491879-68492019;chr15:68497459-68497489			40.00	33.33	NA	NA	40.00	NA	100.00	90.91	NA	NA	88.24	NA	88.89	92.31	NA	NA	90.00	NA	53.85	58.33	NA	NA	87.50	NA	60.00	50.00	NA	NA	69.23	NA	NA	NA	38.89	NA	83.33	NA	56.92	58.33	1.41	0.808974	0.920458
K	intron_retention	PLXND1	chr3	-	chr3:129275272-129275459				chr3:129275271-129275272;chr3:129275459-129275460		5.49	13.98	10.65	10.71	12.44	9.68	1.26	1.77	2.28	1.37	2.05	0.78	1.09	2.30	4.86	2.52	1.92	0.95	17.94	14.74	6.15	22.45	25.78	15.13	15.38	3.88	8.21	2.59	6.23	3.01	8.57	7.39	8.37	5.37	8.22	6.73	11.18	4.69	-6.49	0.968778	1.000000
K	jcn_only_AA	JAGN1	chr3	+	chr3:9932496-9934598	chr3:9932496-9934492		chr3:9934493-9934598	chr3:9934598-9934599		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	RALGDS	chr9	-	chr9:135977150-135977324				chr9:135977149-135977150;chr9:135977324-135977325		11.54	17.65	15.71	NA	20.00	NA	3.57	13.04	9.09	8.33	8.57	4.55	3.03	0.00	0.00	5.95	4.76	4.76	NA	8.97	0.00	11.48	9.38	11.54	NA	6.25	7.69	5.56	12.90	8.57	12.20	11.11	15.38	9.09	6.00	4.55	9.47	10.25	0.78	0.754820	1.000000
K	jcn_only_AD	CWC15	chr11	-	chr11:94705358-94706661	chr11:94705358-94706436		chr11:94706437-94706661	chr11:94706661-94706662		0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	3.57	0.00	0.00	0.00	0.00	8.70	5.88	0.00	0.00	0.00	0.00	0.00	0.279330	0.657607
N	jcn_only_AD	FPGS	chr9	+	chr9:130569968-130570512;chr9:130566980-130570512	chr9:130570055-130570512					6.25	0.00	7.23	6.12	0.00	6.06	0.00	4.11	3.70	4.29	0.00	0.00	0.00	6.56	2.41	5.56	3.23	5.26	0.00	2.63	5.77	9.09	11.54	7.62	NA	6.52	14.29	5.08	11.11	4.62	0.00	10.94	18.18	10.00	7.14	6.15	0.00	5.18	5.18	0.859527	0.930693
K	intron_retention	TMEM147	chr19	+	chr19:36037488-36037573				chr19:36037487-36037488;chr19:36037573-36037574		2.00	0.00	2.08	0.00	2.22	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.75	0.81	0.00	0.00	0.00	1.72	5.08	1.53	2.00	0.00	0.00	7.69	4.55	2.02	0.00	4.55	3.70	2.78	0.00	0.00	0.83	0.00	0.00	0.00	0.643627	1.000000
N	coord_cassette	RNPEPL1	chr2	+	chr2:241512679-241513931	chr2:241512679-241513191;chr2:241513309-241513529;chr2:241513766-241513931		chr2:241513192-241513308;chr2:241513530-241513765			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.23	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.91	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	SERF2	chr15	+	chr15:44085282-44085884				chr15:44085281-44085282;chr15:44085884-44085885		77.78	51.61	78.95	50.00	43.33	45.00	21.43	37.50	41.67	14.29	26.32	13.04	35.71	35.29	58.33	35.29	33.33	25.00	47.83	78.95	59.26	65.38	63.33	47.37	40.00	68.00	73.33	55.56	56.25	56.25	77.78	77.27	74.19	64.00	65.38	71.43	43.91	72.89	28.98	0.720812	1.000000
K	intron_retention	TRAF7	chr16	+	chr16:2225419-2225500				chr16:2225418-2225419;chr16:2225500-2225501		4.76	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.369018	1.000000
N	alternative_donor	GRAMD1A	chr19	+	chr19:35501560-35502377;chr19:35501530-35502377	chr19:35501284-35502377		chr19:35501284-35501529;chr19:35501530-35501559	chr19:35501283-35501284;chr19:35501529-35501530		92.82	40.74	96.54	66.18	35.29	19.09	91.49	97.50	99.01	97.78	92.11	98.20	93.18	98.71	98.29	98.04	90.16	97.72	30.00	94.12	82.05	94.29	86.96	96.18	50.00	97.56	97.76	95.68	78.95	93.46	92.23	96.78	31.58	94.85	91.43	95.83	45.37	95.81	50.44	0.020554	0.274720
N	alternative_acceptor	XPC	chr3	-	chr3:14189280-14189407;chr3:14189333-14189407	chr3:14188880-14189407		chr3:14188880-14189279;chr3:14189280-14189332	chr3:14188879-14188880;chr3:14189279-14189280		93.94	96.08	92.21	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.00	100.00	100.00	NA	100.00	91.18	98.00	92.00	89.66	92.86	100.00	93.33	94.59	100.00	100.00	NA	89.74	93.08	100.00	84.21	92.31	84.00	100.00	93.63	-6.37	0.048123	0.570243
K	alternative_first_exon	RP1-4G17.5	chr17	-	chr17:7150663-7153942;chr17:7150663-7165139	chr17:7150663-7154513	chr17:7165140-7166264	chr17:7154514-7154994			100.00	97.73	93.55	NA	100.00	NA	100.00	100.00	97.37	100.00	99.07	100.00	99.09	96.77	100.00	100.00	100.00	100.00	90.91	95.83	100.00	100.00	98.21	100.00	94.74	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	98.41	98.38	-0.03	0.555041	0.676693
K	intron_retention	MTCH1	chr6	-	chr6:36938471-36940427				chr6:36938470-36938471;chr6:36940427-36940428		7.94	5.08	11.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	1.75	0.00	0.00	5.56	5.32	2.13	6.56	4.76	14.81	0.00	6.14	4.10	3.08	1.33	0.00	13.70	13.13	0.00	7.69	3.66	6.43	1.14	5.73	4.60	0.635472	1.000000
N	jcn_only_AA	XPC	chr3	-	chr3:14193890-14197834;chr3:14195534-14197834	chr3:14193917-14197834		chr3:14193890-14193916;chr3:14193917-14195533	chr3:14193889-14193890;chr3:14193916-14193917		85.71	96.97	95.83	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	93.75	92.96	100.00	100.00	NA	90.62	90.12	100.00	91.43	93.88	90.00	100.00	96.88	-3.12	0.138496	0.663989
K	alternative_last_exon	ALG2	chr9	-	chr9:101981119-101983828	chr9:101983420-101983828	chr9:101979649-101981118	chr9:101983261-101983419			5.41	0.00	0.00	0.00	0.00	4.29	5.66	5.00	8.51	5.61	3.70	5.15	4.08	10.71	7.55	4.35	5.26	8.80	0.00	0.00	0.00	1.02	1.19	2.86	NA	3.57	1.82	2.04	1.85	1.05	2.38	2.99	0.00	2.11	0.99	1.95	0.00	4.29	4.29	0.213295	0.435965
N	jcn_only_AD	ZBTB8OS	chr1	-	chr1:33100394-33116033;chr1:33100394-33116002;chr1:33100394-33116385;chr1:33100394-33116025;chr1:33100394-33116029	chr1:33100394-33102842		chr1:33102843-33116002;chr1:33116003-33116025;chr1:33116026-33116029;chr1:33116030-33116033;chr1:33116034-33116385	chr1:33116002-33116003;chr1:33116025-33116026;chr1:33116029-33116030;chr1:33116033-33116034;chr1:33116385-33116386		0.00	0.00	0.00	0.00	0.00	3.57	13.64	0.00	0.00	11.76	15.38	0.00	2.13	0.00	0.00	4.26	0.00	7.69	2.27	0.00	10.17	0.00	0.00	0.00	6.67	0.00	0.00	0.00	8.33	6.25	0.00	0.00	14.81	6.06	0.00	0.00	4.47	0.00	-4.47	0.050909	0.507362
K	alternative_last_exon	GNAS	chr20	+	chr20:57474041-57478585,chr20:57474041-57478582	chr20:57474041-57475003	chr20:57478586-57478640	chr20:57475004-57475465			5.75	3.41	13.58	9.52	4.76	20.00	1.00	2.43	3.88	2.46	0.98	1.47	1.34	3.87	6.06	2.63	2.26	1.37	8.33	7.14	6.00	2.97	3.40	7.94	10.00	6.35	8.70	3.49	1.99	3.57	3.23	8.16	3.85	7.48	10.34	4.55	3.63	4.81	1.18	0.936415	0.970324
K	intron_retention	TSR3	chr16	-	chr16:1399954-1400058				chr16:1399953-1399954;chr16:1400058-1400059		0.00	0.00	2.50	1.59	2.63	2.82	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	6.67	5.00	2.90	0.00	0.00	0.00	0.00	0.00	0.00	0.785893	1.000000
K	intron_retention	RABGGTB	chr1	+	chr1:76257992-76259768				chr1:76257991-76257992;chr1:76259768-76259769		2.78	1.33	3.57	2.78	1.82	0.00	0.00	0.00	0.00	0.00	0.00	3.85	2.00	0.00	0.00	1.27	0.00	0.00	4.65	2.63	0.00	4.76	0.00	6.06	0.00	3.57	3.45	6.56	3.08	5.26	1.96	1.28	1.67	3.12	6.15	3.33	1.50	2.29	0.79	0.568002	1.000000
N	alternative_first_exon	MKNK1	chr1	-	chr1:47059953-47060539,chr1:47059953-47062822,chr1:47059953-47069836,chr1:47059953-47075070;chr1:47059953-47082382;chr1:47059953-47078575	chr1:47059953-47069898,chr1:47059953-47069856	chr1:47082383-47082563;chr1:47078576-47082137	chr1:47069899-47069927			94.12	100.00	95.65	NA	100.00	NA	96.43	94.44	100.00	83.33	92.73	83.33	91.11	95.35	100.00	82.14	91.18	91.67	81.82	93.75	NA	NA	90.00	NA	NA	96.00	94.44	100.00	100.00	NA	NA	92.31	90.00	75.00	83.33	80.00	91.11	94.44	3.33	0.410281	0.561769
N	cassette	ILF3	chr19	+	chr19:10794647-10799854;chr19:10798385-10799854	chr19:10798385-10799225,chr19:10794647-10799225;chr19:10799355-10799854		chr19:10799226-10799354			84.62	100.00	93.75	100.00	86.36	NA	100.00	NA	100.00	95.92	95.24	94.12	98.04	100.00	97.30	96.55	100.00	100.00	82.35	73.33	90.00	93.75	94.87	100.00	100.00	100.00	90.00	93.75	100.00	100.00	57.14	100.00	83.33	100.00	100.00	81.82	99.02	84.62	-14.40	0.270459	0.709176
K	intron_retention	TTYH3	chr7	+	chr7:2686888-2687051				chr7:2686887-2686888;chr7:2687051-2687052		0.00	4.17	4.85	NA	NA	NA	0.84	1.09	0.00	0.00	0.83	0.00	0.41	0.72	0.00	0.00	0.41	0.00	NA	3.51	NA	2.17	5.22	2.33	21.43	2.54	0.00	0.00	3.33	0.00	10.26	4.26	NA	3.64	3.21	1.54	2.50	1.81	-0.69	0.972798	1.000000
K	cassette	VPS41	chr7	-	chr7:38766589-38768141	chr7:38766589-38767940;chr7:38768035-38768141		chr7:38767941-38768034			12.12	8.57	16.00	NA	11.76	NA	1.45	0.00	3.33	0.00	1.69	0.00	1.69	3.12	3.03	0.00	0.00	0.00	6.67	12.90	13.04	6.67	6.25	5.26	0.00	13.64	14.63	5.26	2.44	7.69	12.12	17.14	0.00	11.11	10.00	11.76	1.57	12.12	10.55	0.067397	0.622875
N	jcn_only_AA	SKAP2	chr7	-	chr7:26708719-26709709;chr7:26708724-26709709;chr7:26709335-26709709	chr7:26709276-26709709		chr7:26708719-26708723;chr7:26708724-26709275;chr7:26709276-26709334	chr7:26708718-26708719;chr7:26708723-26708724;chr7:26709275-26709276		96.43	NA	100.00	NA	NA	NA	100.00	94.59	100.00	100.00	100.00	100.00	98.84	85.71	88.00	100.00	96.67	100.00	100.00	100.00	NA	100.00	100.00	96.67	NA	100.00	96.77	NA	100.00	NA	NA	100.00	100.00	95.45	96.55	100.00	100.00	96.43	-3.57	0.172225	0.663989
N	jcn_only_AA	GTF2E2	chr8	-	chr8:30459452-30464573;chr8:30442676-30464573	chr8:30437914-30464573					100.00	96.88	100.00	100.00	100.00	92.00	100.00	100.00	96.49	98.51	100.00	100.00	100.00	96.49	100.00	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.97	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.964658	0.987257
N	alternative_donor	NDUFA9,RP11-500M8.7	chr12	+	chr12:4764089-4766913	chr12:4765682-4766913		chr12:4764089-4765681	chr12:4764088-4764089		1.96	0.00	1.82	0.00	0.00	0.00	0.00	1.33	1.30	0.00	0.00	1.32	0.00	1.28	0.95	1.04	0.00	0.75	0.00	2.13	0.00	2.63	1.75	7.76	NA	1.43	2.00	1.89	0.00	0.87	2.00	1.52	0.00	2.74	1.59	5.82	0.00	1.69	1.69	0.000116	0.043347
N	cassette	CPNE1	chr20	-	chr20:34219929-34220232;chr20:34219948-34220232	chr20:34219948-34220084,chr20:34219929-34220084;chr20:34220171-34220232		chr20:34220085-34220170			35.94	26.53	29.29	18.18	33.33	NA	85.71	92.86	88.24	NA	84.62	NA	84.00	81.82	85.19	84.00	80.00	NA	NA	25.00	40.00	28.57	27.50	30.43	0.00	45.16	38.00	57.14	72.00	64.29	23.33	27.08	37.50	36.67	25.64	27.69	37.50	40.55	3.05	0.853716	0.950337
K	alternative_acceptor	RPLP0	chr12	-	chr12:120638635-120638885	chr12:120638695-120638885		chr12:120638635-120638694	chr12:120638634-120638635		16.67	14.74	13.21	14.29	12.59	8.82	15.49	6.67	13.49	6.19	7.45	6.76	14.59	5.26	12.59	10.87	6.52	4.98	6.78	3.70	13.56	7.10	7.06	5.29	37.50	NA	11.63	10.06	10.12	11.81	4.00	3.77	9.23	7.49	10.29	8.37	14.66	5.26	-9.40	0.111565	0.605363
K	intron_retention	CMC2	chr16	-	chr16:81031035-81040338				chr16:81031034-81031035;chr16:81040338-81040339		0.00	12.50	0.00	10.00	3.12	NA	4.76	2.70	1.92	11.11	11.54	21.43	0.00	2.63	0.00	5.97	12.12	9.52	0.00	0.00	0.00	3.45	8.57	0.00	NA	0.00	0.00	3.12	4.65	2.86	0.00	3.03	0.00	3.70	0.00	8.11	0.00	0.00	0.00	0.909005	1.000000
N	alternative_acceptor		chr8	+	chr8:42183616-42186646	chr8:42183616-42186641		chr8:42186642-42186646	chr8:42186646-42186647		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	cassette	C14orf159	chr14	+	chr14:91666250-91681748	chr14:91666250-91671049;chr14:91671170-91681748		chr14:91671050-91671169			100.00	100.00	NA	NA	100.00	NA	98.28	88.89	94.74	94.12	100.00	100.00	100.00	100.00	100.00	90.91	91.89	100.00	95.24	95.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	95.83	100.00	100.00	90.00	95.45	100.00	100.00	0.00	0.456450	0.756173
N	cassette	MTMR14	chr3	+	chr3:9714443-9724861	chr3:9714443-9719000;chr3:9719072-9724861		chr3:9719001-9719071			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	92.31	100.00	100.00	97.14	97.87	96.30	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SCYL1	chr11	+	chr11:65304222-65304507				chr11:65304221-65304222;chr11:65304507-65304508		34.38	27.27	28.95	34.62	26.47	25.00	21.21	63.16	43.33	29.55	30.30	22.58	34.48	45.00	30.95	30.30	25.00	20.69	25.64	33.33	40.00	45.00	28.57	36.00	47.62	47.83	26.19	30.43	24.14	38.46	36.67	37.21	23.81	27.03	31.25	25.71	26.45	40.84	14.38	0.465281	1.000000
K	coord_cassette	IRF5	chr7	+	chr7:128587111-128587782	chr7:128587111-128587331;chr7:128587361-128587390;chr7:128587590-128587782		chr7:128587332-128587360;chr7:128587391-128587589			88.24	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	99.03	98.96	100.00	96.43	NA	94.25	91.27	96.19	100.00	97.53	100.00	98.44	97.62	100.00	97.92	95.24	80.00	96.08	100.00	97.89	100.00	97.72	-2.28	0.880952	0.961582
N	alternative_donor	MRPL40	chr22	+	chr22:19420131-19420787;chr22:19420383-19420787	chr22:19420329-19420787		chr22:19420131-19420328;chr22:19420329-19420382	chr22:19420130-19420131;chr22:19420328-19420329		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	4.35	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	UBL5	chr19	+	chr19:9938644-9939002;chr19:9938661-9939002	chr19:9938741-9939002		chr19:9938644-9938660;chr19:9938661-9938740	chr19:9938643-9938644;chr19:9938660-9938661		6.14	5.75	5.98	7.84	6.77	5.50	8.20	9.09	10.62	8.77	6.04	8.33	7.04	8.84	10.56	8.91	7.77	6.92	7.18	6.73	9.36	5.71	5.61	5.61	7.11	8.24	9.66	8.87	6.69	7.27	6.88	7.76	6.17	7.25	7.62	6.60	7.08	7.56	0.49	0.254790	0.624867
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49954106-49954741	chr19:49954197-49954741		chr19:49954106-49954196	chr19:49954105-49954106		5.56	3.57	6.25	0.00	3.70	0.00	0.00	0.00	6.25	0.00	3.23	4.00	2.13	4.35	5.00	4.17	2.22	0.00	2.63	6.90	2.04	0.00	6.06	7.14	0.00	8.70	2.38	0.00	6.45	0.00	6.45	10.29	4.17	5.00	7.14	6.06	2.38	6.00	3.62	0.050621	0.570243
K	intron_retention	SERPINB8	chr18	+	chr18:61652480-61654107				chr18:61652479-61652480;chr18:61654107-61654108		0.00	0.00	10.81	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.04	0.00	3.57	0.00	1.37	0.00	2.00	1.22	0.00	8.11	9.38	0.00	1.75	7.27	1.79	0.00	0.69	0.69	0.632017	1.000000
N	alternative_acceptor	CLASRP	chr19	+	chr19:45572507-45572893;chr19:45572507-45573279	chr19:45572507-45573201		chr19:45572894-45573201;chr19:45573202-45573279	chr19:45573201-45573202;chr19:45573279-45573280		1.11	1.19	2.41	3.06	2.13	2.14	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	1.35	2.41	2.38	4.05	0.00	1.93	5.45	4.35	5.88	6.52	3.08	1.45	2.25	1.14	0.00	0.00	2.97	1.17	1.23	0.06	0.578006	0.839743
K	intron_retention	URGCP-MRPS24	chr7	-	chr7:43908976-43909055				chr7:43908975-43908976;chr7:43909055-43909056		0.00	9.43	3.12	3.70	7.14	4.08	7.14	0.00	2.38	3.57	3.28	1.56	9.62	7.14	5.26	9.23	3.80	2.78	4.55	8.33	3.45	5.26	9.52	6.12	4.35	NA	0.00	14.29	16.67	3.64	5.26	2.56	4.88	0.00	3.03	4.17	6.01	5.26	-0.75	0.832825	1.000000
N	jcn_only_AA	ABRACL,ORC3	chr6	+	chr6:139350013-139355291;chr6:139350013-139355295	chr6:139350013-139354885		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		9.82	5.74	9.82	0.00	5.43	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.729037	0.878472
K	jcn_only_AD	ELP5	chr17	+	chr17:7158086-7160175	chr17:7158123-7160175		chr17:7158086-7158122	chr17:7158085-7158086		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	90.00	NA	100.00	NA	94.12	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	90.91	94.74	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
K	jcn_only_AD	ITGB5	chr3	-	chr3:124592379-124597449;chr3:124592379-124606446;chr3:124592379-124605777	chr3:124592379-124620112		chr3:124597450-124605777;chr3:124605778-124606446;chr3:124606447-124620112	chr3:124605777-124605778;chr3:124606446-124606447;chr3:124620112-124620113		0.00	7.04	6.98	NA	0.00	NA	2.34	0.00	0.00	0.00	1.60	0.00	1.74	2.44	NA	0.00	2.16	0.00	NA	0.00	NA	0.00	1.92	0.00	0.00	2.44	0.00	0.00	4.76	0.00	0.00	0.00	NA	0.00	6.56	2.22	2.04	0.00	-2.04	0.288536	0.657607
N	jcn_only_AA	TMEM150B	chr19	-	chr19:55831972-55834015;chr19:55832462-55834015;chr19:55833903-55834015;chr19:55832368-55834015;chr19:55832788-55834015;chr19:55832476-55834015;chr19:55833470-55834015	chr19:55832413-55834015		chr19:55831972-55832367;chr19:55832368-55832412;chr19:55832413-55832461;chr19:55832462-55832475;chr19:55832476-55832787;chr19:55832788-55833469;chr19:55833470-55833902	chr19:55831971-55831972;chr19:55832367-55832368;chr19:55832412-55832413;chr19:55832461-55832462;chr19:55832475-55832476;chr19:55832787-55832788;chr19:55833469-55833470		37.61	30.23	49.48	NA	50.00	NA	50.70	51.22	48.37	27.27	38.71	38.27	30.34	38.85	36.02	44.44	35.14	23.81	NA	42.86	46.51	NA	40.74	40.74	27.27	28.17	30.69	25.00	30.30	22.58	50.00	47.83	NA	50.00	43.48	36.67	30.29	40.86	10.57	0.334222	0.663989
N	cassette	CC2D1B	chr1	-	chr1:52820612-52821279	chr1:52820612-52821069;chr1:52821122-52821279		chr1:52821070-52821121			95.08	100.00	92.45	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.61	87.50	100.00	86.54	95.92	NA	100.00	92.42	100.00	100.00	100.00	88.46	87.80	83.87	94.83	90.48	95.40	100.00	98.31	-1.69	0.983010	0.995298
N	alternative_last_exon	SCO2,TYMP	chr22	-	chr22:50964571-50964674,chr22:50964586-50964674;chr22:50964348-50964674	chr22:50962854-50964674	chr22:50964430-50964570;chr22:50964181-50964347	chr22:50961997-50962853			3.12	3.00	5.85	0.79	13.38	1.08	0.88	3.17	5.57	5.94	8.42	3.28	4.11	4.61	4.03	2.83	7.63	1.94	1.57	4.15	3.02	1.25	7.25	7.53	0.19	1.79	7.30	3.13	4.70	3.75	6.41	8.71	4.98	6.28	6.82	4.39	2.29	3.66	1.38	0.188701	0.414077
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134473698-134477447	chr9:134473931-134477447		chr9:134473698-134473930	chr9:134473697-134473698		0.00	0.00	2.94	NA	NA	NA	0.00	1.25	0.00	0.79	0.43	0.00	0.86	1.15	1.74	0.00	0.98	0.00	NA	0.00	0.00	0.00	3.90	0.00	10.00	0.00	2.38	0.00	0.00	0.00	0.00	2.70	10.00	2.90	1.37	2.70	0.86	0.00	-0.86	0.189251	0.660713
K	intron_retention	COG1	chr17	+	chr17:71202957-71203319				chr17:71202956-71202957;chr17:71203319-71203320		18.75	11.43	10.34	0.00	2.50	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	4.88	5.26	0.00	0.00	0.00	0.00	0.00	11.11	3.85	0.00	9.09	3.70	9.09	10.00	5.88	0.00	0.00	5.00	2.44	9.09	6.65	0.518669	1.000000
K	alternative_last_exon	HSPB11	chr1	-	chr1:54382790-54389576	chr1:54387441-54389576	chr1:54382247-54382789	chr1:54387234-54387440			93.55	93.48	85.19	94.44	95.24	97.06	85.00	95.00	85.00	91.67	93.33	90.91	91.89	91.30	83.33	95.00	94.74	92.31	96.08	96.43	91.84	90.00	93.94	100.00	88.37	84.21	89.66	100.00	90.91	95.24	94.44	96.15	94.12	93.33	95.00	94.12	92.69	94.00	1.31	0.692770	0.811485
K	cassette	PABPC4	chr1	-	chr1:40029414-40030094;chr1:40029414-40030142	chr1:40029414-40029507;chr1:40029595-40030094,chr1:40029595-40030142		chr1:40029508-40029594			85.19	83.70	83.33	76.32	77.78	73.33	89.36	82.35	88.89	71.43	76.42	73.33	84.68	100.00	96.00	82.81	69.16	64.71	72.73	86.36	80.77	79.75	73.91	74.68	76.32	92.00	83.33	79.59	81.31	75.00	92.98	88.46	84.78	80.00	83.51	85.21	84.19	89.18	4.99	0.055633	0.590788
K	jcn_only_AA	PRPF19	chr11	-	chr11:60666051-60668325	chr11:60668164-60668325		chr11:60666051-60668163	chr11:60666050-60666051		100.00	100.00	96.97	NA	100.00	NA	98.44	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.55	98.63	100.00	86.67	100.00	91.30	100.00	96.55	100.00	NA	100.00	96.00	100.00	97.44	100.00	91.67	100.00	95.24	100.00	100.00	100.00	98.44	100.00	1.56	0.588412	0.810249
K	intron_retention	CIAO1	chr2	+	chr2:96933475-96933573				chr2:96933474-96933475;chr2:96933573-96933574		8.33	0.00	7.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	4.76	0.00	0.00	5.56	9.09	NA	0.00	3.70	0.00	4.17	0.00	25.00	14.29	8.33	0.00	5.00	0.00	0.00	2.38	2.38	0.691927	1.000000
K	intron_retention	EIF3F	chr11	+	chr11:8016065-8016528				chr11:8016064-8016065;chr11:8016528-8016529		8.47	6.79	5.21	4.63	3.27	5.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	5.88	2.88	5.88	3.09	4.60	1.52	4.35	2.61	0.92	1.24	2.01	3.64	6.86	0.53	1.90	3.73	4.40	1.02	4.00	2.97	0.761400	1.000000
N	alternative_acceptor	STAB1	chr3	+	chr3:52548230-52548380	chr3:52548230-52548352		chr3:52548353-52548380	chr3:52548380-52548381		2.02	6.54	3.09	0.00	1.72	0.00	0.48	0.00	0.00	0.00	0.34	0.00	0.89	0.00	0.00	0.21	0.69	0.00	4.44	4.62	NA	1.18	4.07	1.28	6.04	0.00	1.85	0.41	3.46	0.00	0.00	1.75	6.76	0.42	2.65	0.95	5.24	0.00	-5.24	0.055126	0.570243
N	alternative_acceptor	CCS	chr11	+	chr11:66372888-66372940;chr11:66372888-66372959	chr11:66372888-66373215		chr11:66372941-66372959;chr11:66372960-66373215	chr11:66372959-66372960;chr11:66373215-66373216		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
N	jcn_only_AD	MICAL1	chr6	-	chr6:109774571-109774840	chr6:109774571-109774809		chr6:109774810-109774840	chr6:109774840-109774841		NA	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	CAP1	chr1	+	chr1:40535547-40535830				chr1:40535546-40535547;chr1:40535830-40535831		0.00	0.00	0.40	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	13.33	0.21	0.00	0.41	0.20	0.31	NA	0.16	0.48	0.00	0.30	0.00	0.00	0.78	4.76	0.22	0.56	0.19	0.00	0.00	0.00	0.617018	1.000000
K	alternative_donor	TRAPPC5	chr19	+	chr19:7745936-7747127;chr19:7745913-7747127	chr19:7745765-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		80.77	89.47	96.55	92.31	92.86	90.00	89.19	84.62	88.24	92.86	90.32	94.74	93.02	95.00	95.45	96.88	92.31	100.00	94.94	96.55	87.50	100.00	93.85	100.00	88.64	88.24	84.00	90.00	90.48	90.00	100.00	96.00	92.98	100.00	85.00	88.89	91.22	91.62	0.40	0.879860	0.969920
K	intron_retention	CORO1A	chr16	+	chr16:30198823-30199045				chr16:30198822-30198823;chr16:30199045-30199046		1.21	2.39	3.33	0.00	5.14	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.67	0.50	0.00	0.00	0.27	0.00	2.05	2.44	1.63	0.00	2.31	0.00	3.72	0.00	1.90	0.00	3.53	0.00	0.00	0.00	2.54	0.00	5.62	0.00	2.22	0.25	-1.97	0.274675	1.000000
K	intron_retention	PABPC4	chr1	-	chr1:40029414-40029507				chr1:40029413-40029414;chr1:40029507-40029508		11.11	0.00	4.00	0.00	4.65	0.00	0.00	0.00	3.85	1.23	0.88	0.00	0.83	6.25	3.23	2.48	3.03	0.00	6.67	9.52	0.00	7.59	3.97	6.85	0.00	15.38	6.25	4.76	3.81	5.41	8.82	12.50	0.00	5.88	6.86	1.55	0.00	9.17	9.17	0.405952	1.000000
K	jcn_only_AA	MGRN1	chr16	+	chr16:4733934-4738796	chr16:4733934-4736259		chr16:4736260-4738796	chr16:4738796-4738797		13.79	25.00	11.63	NA	25.00	6.67	12.20	15.79	14.00	24.44	22.41	28.95	18.75	20.83	9.26	22.64	25.00	28.12	14.29	19.35	15.38	21.05	24.00	31.58	0.00	22.58	8.70	25.00	23.81	17.39	27.27	8.11	10.00	26.09	29.41	26.53	13.24	20.09	6.85	0.137370	0.663989
K	intron_retention	ARL6IP4	chr12	+	chr12:123466357-123466577				chr12:123466356-123466357;chr12:123466577-123466578		93.10	89.57	83.33	84.62	83.22	82.11	90.00	81.82	81.63	82.81	79.63	79.63	90.83	100.00	91.49	87.14	79.53	82.69	78.75	91.30	84.55	84.62	88.51	100.00	82.21	93.75	100.00	89.80	100.00	100.00	88.89	89.47	84.51	100.00	90.74	83.02	87.04	92.20	5.16	0.783379	1.000000
N	alternative_last_exon	OAS1	chr12	+	chr12:113354544-113369682;chr12:113354544-113355351	chr12:113354544-113357291,chr12:113354544-113357193	chr12:113369683-113371027;chr12:113355352-113356267	chr12:113357292-113357680			1.18	15.79	5.88	17.65	NA	5.71	5.88	0.75	2.29	5.41	14.81	3.31	2.38	0.19	3.20	2.08	11.11	1.22	20.00	1.36	7.77	8.33	NA	1.14	27.78	0.23	3.70	2.38	10.00	0.84	3.06	14.50	41.67	18.75	25.00	4.48	17.89	0.96	-16.93	0.029774	0.217248
K	intron_retention	EML3	chr11	-	chr11:62371674-62372584				chr11:62371673-62371674;chr11:62372584-62372585		6.67	0.00	6.78	0.00	6.98	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	4.35	6.67	4.55	7.69	6.25	0.00	0.00	5.26	0.00	4.88	5.56	4.00	12.50	3.33	11.11	11.11	5.88	0.00	4.00	4.00	0.761774	1.000000
K	intron_retention	NCKAP1L	chr12	+	chr12:54911427-54911589				chr12:54911426-54911427;chr12:54911589-54911590		2.33	10.81	3.61	NA	0.00	NA	0.49	0.40	0.00	0.00	0.00	0.00	0.75	0.00	0.55	0.00	0.38	0.00	NA	0.00	0.00	0.00	2.91	0.00	0.00	1.61	4.76	3.45	0.00	0.00	0.00	1.22	NA	1.23	2.61	0.86	0.62	0.20	-0.42	0.739510	1.000000
N	alternative_acceptor		chr1	+	chr1:36642183-36642303	chr1:36642183-36642297		chr1:36642298-36642303	chr1:36642303-36642304		100.00	100.00	94.12	NA	100.00	NA	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	94.12	NA	100.00	100.00	100.00	94.29	NA	100.00	94.55	95.35	100.00	100.00	100.00	93.10	94.12	NA	100.00	95.45	100.00	100.00	99.14	-0.86	0.120721	0.606219
K	cassette	ADIRF	chr10	+	chr10:88728363-88730232	chr10:88728363-88729956;chr10:88730020-88730232		chr10:88729957-88730019			NA	52.17	NA	67.86	61.25	81.28	75.00	78.95	100.00	85.90	81.08	91.67	80.00	76.19	87.50	82.11	76.40	91.11	68.09	69.23	72.50	72.50	66.15	80.43	72.93	71.88	68.18	77.78	79.64	85.56	72.73	68.42	69.35	72.22	70.59	77.42	71.14	72.73	1.59	0.356153	0.709176
N	jcn_only_AA	METTL9	chr16	+	chr16:21636437-21638265;chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666550	chr16:21636437-21666547		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		53.98	64.44	52.90	48.48	59.68	50.00	61.96	68.97	59.22	50.00	58.70	67.74	61.76	64.52	68.75	59.62	60.71	64.71	61.11	50.00	61.11	46.15	40.68	42.31	100.00	68.18	47.87	60.61	62.71	64.52	58.18	47.13	44.12	53.57	54.72	59.02	61.86	61.35	-0.51	0.565902	0.794474
N	alternative_acceptor	CUEDC1	chr17	-	chr17:55944777-55945510	chr17:55945054-55945510		chr17:55944777-55945053	chr17:55944776-55944777		9.76	6.25	26.32	NA	4.55	NA	2.50	0.00	2.94	0.00	0.00	0.00	2.08	2.56	0.00	0.00	0.00	0.00	0.00	25.00	6.67	16.67	10.26	8.33	0.00	9.52	8.00	15.38	7.50	11.76	10.00	10.00	5.26	11.54	9.68	15.62	2.29	9.64	7.35	0.117844	0.606219
N	alternative_last_exon	CTSD,RP11-295K3.1	chr11	-	chr11:1774912-1775032,chr11:1774892-1775032;chr11:1756660-1775032;chr11:1774901-1775032	chr11:1769350-1775032	chr11:1753640-1756659;chr11:1773982-1774900	chr11:1768897-1769349			2.96	0.97	5.26	0.39	1.09	0.16	0.45	0.52	0.74	0.53	0.58	0.53	0.23	0.46	0.36	0.28	0.30	0.41	0.38	1.58	0.52	1.05	1.57	1.16	0.24	0.96	1.82	0.36	0.69	0.19	1.34	1.86	0.46	1.14	1.38	1.05	0.42	1.15	0.73	0.075324	0.281549
K	coord_cassette	WDR45	chrX	-	chrX:48933605-48935301	chrX:48933605-48934088;chrX:48934184-48934303;chrX:48934464-48935301		chrX:48934089-48934183;chrX:48934304-48934463			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	94.74	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	TNFRSF1A	chr12	-	chr12:6443411-6450941				chr12:6443410-6443411;chr12:6450941-6450942		0.00	2.78	0.61	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	0.64	0.00	0.00	0.00	0.00	17.65	0.47	0.00	0.00	0.00	0.00	1.54	0.00	NA	0.72	0.00	0.48	0.00	0.23	0.23	0.848329	1.000000
K	intron_retention	AMDHD2	chr16	+	chr16:2579097-2579475				chr16:2579096-2579097;chr16:2579475-2579476		27.59	10.38	25.00	3.45	5.88	4.65	0.00	NA	0.00	0.00	0.00	0.00	2.70	NA	0.00	0.00	0.00	0.00	2.86	23.53	4.26	18.75	23.53	NA	4.29	10.00	20.00	0.00	7.69	0.00	20.69	21.74	3.48	8.70	10.00	5.88	3.17	22.11	18.94	0.162212	1.000000
K	intron_retention	DDX39A	chr19	-	chr19:14520260-14520347				chr19:14520259-14520260;chr19:14520347-14520348		16.67	16.39	18.37	13.73	17.74	7.58	7.14	15.38	13.04	8.49	9.71	0.00	5.15	18.75	15.15	8.18	4.55	1.82	14.29	16.42	20.51	19.18	21.01	12.16	26.19	24.32	16.67	14.29	18.39	13.85	35.80	26.87	20.24	13.58	13.04	11.76	15.34	17.71	2.37	0.377047	1.000000
N	jcn_only_AA	TRADD	chr16	-	chr16:67189696-67190412;chr16:67189558-67190412	chr16:67190103-67190412		chr16:67189558-67189695;chr16:67189696-67190102	chr16:67189557-67189558;chr16:67189695-67189696		5.88	0.00	0.00	0.00	0.00	0.00	0.00	3.08	0.00	0.00	0.00	4.55	0.00	0.00	1.04	0.00	NA	6.67	NA	3.85	0.00	0.00	10.00	18.92	0.00	1.75	0.00	0.00	0.00	5.48	8.33	0.00	NA	0.00	NA	7.46	0.00	3.46	3.46	0.025385	0.621886
K	alternative_first_exon	SNRPC	chr6	+	chr6:34725329-34730371	chr6:34725732-34730371	chr6:34725183-34725328	chr6:34725331-34725731			100.00	83.87	97.37	92.31	96.30	NA	95.74	100.00	95.12	90.48	93.44	93.33	97.67	100.00	95.12	97.37	96.72	91.18	86.36	96.15	97.14	95.83	90.91	95.65	NA	93.33	93.33	88.46	93.33	95.83	83.33	86.84	69.70	90.32	84.85	87.50	86.36	98.08	11.72	0.169664	0.374383
N	alternative_donor		chr3	-	chr3:129286649-129288689	chr3:129286649-129288685		chr3:129288686-129288689	chr3:129288689-129288690		100.00	100.00	98.28	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	96.43	97.06	95.24	98.33	100.00	100.00	90.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.389437	0.657675
N	cassette	RAB1A	chr2	-	chr2:65315825-65331867;chr2:65315825-65318116;chr2:65315825-65325104	chr2:65315825-65316072;chr2:65316205-65325104,chr2:65316205-65318116,chr2:65316205-65331867		chr2:65316073-65316204			91.12	100.00	97.35	97.87	100.00	100.00	98.81	99.41	100.00	100.00	98.95	98.64	99.51	99.38	99.54	99.44	99.49	99.53	96.43	96.15	97.12	99.07	99.19	98.85	100.00	97.70	99.15	100.00	100.00	100.00	93.42	93.52	89.13	98.60	98.80	98.21	99.16	96.93	-2.23	0.623612	0.863201
K	alternative_last_exon	C11orf30,NUDT22	chr11	+	chr11:63997044-63997654	chr11:63997044-63997321	chr11:63997655-63997791	chr11:63997322-63997542			86.96	99.02	84.62	100.00	100.00	100.00	94.44	NA	100.00	NA	93.75	NA	100.00	100.00	89.47	NA	93.75	NA	100.00	NA	98.00	NA	86.96	NA	97.73	100.00	97.06	NA	95.65	100.00	100.00	88.46	98.75	NA	95.24	NA	98.88	100.00	1.12	0.666819	0.789990
K	alternative_acceptor	EPN1	chr19	+	chr19:56204163-56204319	chr19:56204163-56204316		chr19:56204317-56204319	chr19:56204319-56204320		38.60	35.96	43.75	42.86	36.99	25.00	48.65	40.91	54.29	52.94	52.94	41.67	47.13	43.18	43.90	43.24	51.22	NA	40.91	36.67	47.17	50.00	43.14	NA	39.74	32.00	30.16	50.00	40.00	42.11	32.56	32.14	35.53	48.28	34.88	35.29	40.33	37.64	-2.69	0.199394	0.666141
K	intron_retention	RP11-1035H13.3	chr16	-	chr16:18800441-18801565				chr16:18800440-18800441;chr16:18801565-18801566		0.00	0.00	0.00	3.03	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	1.90	0.00	0.00	0.00	3.45	4.55	3.08	1.16	5.36	0.00	0.00	0.00	0.00	0.00	1.47	7.69	5.80	3.66	1.82	1.61	1.47	0.00	0.00	0.00	0.770362	1.000000
N	coord_cassette	HSD17B14	chr19	-	chr19:49316606-49318293	chr19:49316606-49316689;chr19:49316810-49316919;chr19:49316988-49318293		chr19:49316690-49316809;chr19:49316920-49316987			85.71	100.00	NA	85.71	86.27	89.19	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.45	100.00	100.00	96.00	90.20	100.00	78.57	100.00	100.00	94.44	93.62	100.00	81.48	100.00	91.49	81.25	100.00	96.97	96.22	100.00	3.78	0.876855	0.961462
N	coord_cassette	DHRS7	chr14	-	chr14:60611732-60620676	chr14:60611732-60616167;chr14:60616287-60616782;chr14:60616906-60619656;chr14:60619897-60620676		chr14:60616168-60616286;chr14:60616783-60616905;chr14:60619657-60619896			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.72	100.00	100.00	100.00	100.00	100.00	0.00	0.286361	0.643829
N	intron_retention		chr20	-	chr20:61827123-61827806				chr20:61827122-61827123;chr20:61827806-61827807		100.00	100.00	94.00	87.50	92.98	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	95.24	100.00	NA	100.00	100.00	100.00	94.87	91.07	96.43	100.00	90.00	93.55	100.00	97.78	100.00	100.00	89.36	89.19	100.00	100.00	100.00	100.00	100.00	0.00	0.919207	1.000000
K	intron_retention	LACC1,RP11-65B7.2	chr13	+	chr13:44464411-44465584				chr13:44464410-44464411;chr13:44465584-44465585		5.77	0.00	10.61	NA	0.00	NA	0.93	0.00	0.00	0.00	1.37	0.00	0.51	0.55	0.00	0.00	0.83	0.00	NA	5.13	NA	4.55	5.26	0.00	NA	4.44	0.00	3.12	6.17	NA	0.00	4.76	0.00	8.54	7.62	4.55	0.26	2.50	2.24	0.287257	1.000000
K	intron_retention	DVL3	chr3	+	chr3:183885854-183887793				chr3:183885853-183885854;chr3:183887793-183887794		0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	2.78	6.67	0.00	3.70	0.00	2.44	6.90	0.00	4.76	3.57	0.00	3.03	0.00	5.41	3.33	1.67	0.00	0.00	0.00	0.594508	1.000000
N	coord_cassette	AUP1	chr2	-	chr2:74755134-74756258	chr2:74755134-74755543;chr2:74755617-74755877;chr2:74756063-74756258		chr2:74755544-74755616;chr2:74755878-74756062			100.00	100.00	100.00	100.00	93.94	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	78.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	SIRT6	chr19	-	chr19:4179284-4180778				chr19:4179283-4179284;chr19:4180778-4180779		4.35	0.00	17.86	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	NA	3.12	0.00	3.12	0.00	0.00	0.00	NA	3.85	11.11	7.14	16.13	0.00	0.00	5.88	8.00	7.14	9.52	0.00	13.04	8.82	7.14	14.29	8.70	8.00	0.00	4.10	4.10	0.715283	1.000000
N	cassette	UFD1L	chr22	-	chr22:19459332-19466605	chr22:19459332-19462590;chr22:19462624-19466605		chr22:19462591-19462623			57.45	36.67	49.12	75.00	75.00	NA	60.00	58.06	67.57	76.32	75.00	82.14	71.43	80.00	64.71	80.88	81.08	78.57	57.89	52.94	63.64	62.86	60.34	65.52	NA	51.52	54.39	73.53	63.16	52.38	37.50	42.11	44.83	71.43	65.38	59.26	57.89	55.20	-2.70	0.807662	0.936947
K	alternative_acceptor	FERMT3	chr11	+	chr11:63974287-63974825	chr11:63974287-63974822		chr11:63974823-63974825	chr11:63974825-63974826		53.47	64.47	61.97	70.59	68.89	NA	65.01	71.89	64.04	66.35	66.08	64.93	64.07	67.48	69.77	65.07	65.49	65.79	55.00	56.67	64.00	61.36	57.77	59.46	57.14	66.43	70.08	68.00	70.31	67.86	54.69	62.00	53.57	66.85	64.14	57.28	60.60	61.55	0.95	0.632093	0.859182
K	jcn_only_AA	ETV6	chr12	+	chr12:12038961-12044474	chr12:12038961-12043874		chr12:12043875-12044474	chr12:12044474-12044475		100.00	100.00	100.00	93.75	100.00	90.32	97.56	100.00	96.88	96.00	98.77	100.00	100.00	100.00	100.00	93.18	97.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.55	100.00	100.00	100.00	100.00	96.15	100.00	88.24	100.00	96.49	100.00	98.78	100.00	1.22	0.472769	0.731987
N	jcn_only_AD	COA6	chr1	+	chr1:234510136-234519468;chr1:234510022-234519468	chr1:234513356-234519468		chr1:234510022-234510135;chr1:234510136-234513355	chr1:234510021-234510022;chr1:234510135-234510136		1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	CDK5RAP2	chr9	-	chr9:123165350-123165520;chr9:123165350-123165593;chr9:123165350-123165616	chr9:123165350-123166313		chr9:123165521-123165593;chr9:123165594-123165616;chr9:123165617-123166313	chr9:123165593-123165594;chr9:123165616-123165617;chr9:123166313-123166314		100.00	88.89	89.66	NA	95.00	NA	100.00	NA	100.00	91.67	100.00	NA	100.00	NA	NA	63.64	100.00	NA	93.75	100.00	90.48	NA	91.67	NA	100.00	90.00	100.00	81.82	90.32	NA	90.91	94.74	90.48	72.73	90.00	87.50	96.88	95.45	-1.42	0.935491	0.963779
K	intron_retention		chr8	+	chr8:145160901-145160978				chr8:145160900-145160901;chr8:145160978-145160979		2.90	2.60	3.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	2.70	0.00	0.00	1.22	0.00	0.00	0.00	8.20	4.65	7.89	0.00	1.45	0.00	0.00	1.43	1.43	0.930474	1.000000
K	intron_retention	HGS	chr17	+	chr17:79657773-79658476				chr17:79657772-79657773;chr17:79658476-79658477		5.88	0.00	2.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	NA	3.33	0.00	1.25	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	HNRNPA2B1,IGFBP3	chr7	-	chr7:26230749-26231920;chr7:26230749-26231218;chr7:26230749-26232114	chr7:26230749-26231041		chr7:26231042-26231218;chr7:26231219-26231920;chr7:26231921-26232114	chr7:26231218-26231219;chr7:26231920-26231921;chr7:26232114-26232115		45.92	60.06	48.66	60.52	61.54	32.46	39.80	32.60	32.45	63.64	41.15	40.89	77.64	31.55	36.44	60.17	66.01	41.18	57.44	43.07	55.62	49.43	57.23	39.31	36.64	42.70	30.90	61.57	70.00	59.03	20.47	36.24	53.82	62.62	68.40	42.34	55.63	37.65	-17.98	0.034617	0.349791
N	cassette	IPO13	chr1	+	chr1:44432455-44432986	chr1:44432455-44432601;chr1:44432692-44432986		chr1:44432602-44432691			100.00	87.50	93.33	87.50	85.71	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	92.68	100.00	100.00	100.00	93.10	NA	100.00	92.31	100.00	100.00	95.24	100.00	100.00	100.00	100.00	87.50	90.91	88.24	100.00	100.00	0.00	0.648763	0.870529
K	alternative_acceptor	HMG20B	chr19	+	chr19:3573799-3574380;chr19:3573799-3574338;chr19:3573799-3574367	chr19:3573799-3573900		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		11.43	7.14	14.29	11.76	20.69	NA	5.41	9.52	4.76	8.62	10.77	6.52	4.29	8.33	13.64	9.09	8.82	13.33	5.26	12.50	12.50	9.52	14.29	11.11	13.89	13.64	22.73	11.54	14.58	9.09	10.87	13.21	9.52	26.32	17.24	21.62	6.28	11.15	4.87	0.072941	0.585944
K	alternative_donor	TXNDC17	chr17	+	chr17:6544473-6545072;chr17:6544548-6545072	chr17:6544421-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		1.37	8.05	1.37	8.51	3.28	3.57	1.37	0.00	1.64	2.63	1.52	0.00	4.21	2.86	0.00	0.00	3.61	0.00	5.48	0.00	2.67	5.13	2.35	3.85	2.70	2.50	3.53	0.00	1.30	0.00	0.00	0.00	6.58	2.33	1.49	5.88	4.85	0.69	-4.16	0.014462	0.251776
K	intron_retention	SETD2	chr3	-	chr3:47058745-47059127				chr3:47058744-47058745;chr3:47059127-47059128		4.35	0.00	5.36	0.00	0.00	NA	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.70	0.00	0.00	0.00	0.00	5.88	1.89	0.00	0.00	0.00	2.00	0.00	1.85	1.85	0.249286	1.000000
K	jcn_only_AA	SNRPB	chr20	-	chr20:2442440-2443281	chr20:2442586-2443281		chr20:2442440-2442585	chr20:2442439-2442440		53.25	63.58	66.91	55.05	61.83	50.18	64.22	53.33	63.16	62.30	64.47	62.90	69.05	57.41	64.71	63.68	67.29	65.97	68.00	64.65	68.09	73.61	73.36	67.15	52.65	65.88	69.23	59.32	59.15	56.10	64.35	71.31	62.91	67.63	73.01	67.57	63.90	60.88	-3.02	0.312164	0.663989
N	jcn_only_AD	EIF4A2	chr3	+	chr3:186506210-186506913;chr3:186506206-186506913	chr3:186506202-186506913		chr3:186506202-186506205;chr3:186506206-186506209	chr3:186506201-186506202;chr3:186506205-186506206		0.00	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.452596	0.707634
K	jcn_only_AA	SMARCA4	chr19	+	chr19:11152237-11168933	chr19:11152237-11168930		chr19:11168931-11168933	chr19:11168933-11168934		60.00	42.25	60.00	60.00	52.50	70.00	55.81	76.92	66.67	67.65	72.22	65.00	63.46	72.73	64.71	69.77	64.81	50.00	54.55	69.23	66.67	66.67	55.00	66.67	52.94	69.23	65.96	69.57	63.64	59.09	64.71	61.90	46.15	55.88	59.26	48.15	53.74	69.23	15.49	0.002140	0.397287
K	intron_retention	TAPBP	chr6	-	chr6:33271995-33272073				chr6:33271994-33271995;chr6:33272073-33272074		7.61	3.57	4.92	0.00	0.00	0.00	1.03	1.29	0.61	0.00	1.19	0.00	0.00	1.77	2.40	0.00	0.00	1.08	0.00	6.41	1.28	5.26	4.65	13.56	0.00	1.38	4.46	6.06	3.57	3.17	7.95	5.47	0.00	11.76	7.84	10.66	0.00	4.09	4.09	0.194470	1.000000
K	intron_retention	SUN2	chr22	-	chr22:39141817-39144717				chr22:39141816-39141817;chr22:39144717-39144718		5.45	12.90	2.94	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	5.56	7.14	5.41	1.85	7.14	0.00	NA	16.00	7.50	NA	0.00	0.00	10.00	3.57	3.31	-0.25	0.884348	1.000000
K	intron_retention	SELO	chr22	+	chr22:50655306-50655400				chr22:50655305-50655306;chr22:50655400-50655401		0.00	0.00	0.00	0.00	1.16	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	7.14	2.54	2.44	1.27	0.00	1.72	0.00	0.00	0.00	2.17	0.00	4.26	2.41	4.92	2.22	4.00	3.12	3.12	1.64	0.00	0.00	0.00	0.898367	1.000000
K	intron_retention		chr21	+	chr21:45745148-45745843				chr21:45745147-45745148;chr21:45745843-45745844		4.80	6.51	12.00	9.23	7.97	10.14	0.56	0.00	0.00	0.00	0.70	0.00	0.47	0.93	1.20	1.69	1.88	0.00	5.56	3.90	5.59	9.09	11.97	11.36	10.00	3.12	6.03	7.14	8.94	10.84	4.12	7.69	8.43	8.33	6.31	8.94	6.04	3.51	-2.53	0.762959	1.000000
N	alternative_acceptor	TRIM38	chr6	+	chr6:25973305-25973400	chr6:25973305-25973374		chr6:25973375-25973400	chr6:25973400-25973401		1.90	0.00	3.90	NA	0.00	0.00	2.22	0.71	0.64	0.00	3.33	2.27	2.27	0.85	1.23	0.00	3.23	0.00	0.00	0.86	3.57	0.00	3.33	3.33	NA	1.38	1.61	2.78	3.70	3.39	2.44	4.23	5.88	0.00	5.00	2.50	2.22	1.12	-1.10	0.550046	0.824249
K	intron_retention		chr17	-	chr17:42160189-42160912				chr17:42160188-42160189;chr17:42160912-42160913		11.94	4.40	15.00	0.00	3.23	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	3.23	15.79	4.88	0.00	1.96	0.00	6.67	11.43	14.29	NA	0.00	NA	14.29	15.00	5.43	0.00	0.00	5.26	3.82	11.68	7.87	0.414006	1.000000
K	intron_retention		chr17	-	chr17:27042724-27042817				chr17:27042723-27042724;chr17:27042817-27042818		2.38	0.00	3.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.00	1.57	0.00	4.17	NA	0.00	2.27	1.99	0.00	3.17	0.00	6.98	3.85	0.00	0.00	2.78	4.17	0.00	2.13	2.13	0.381755	1.000000
N	alternative_acceptor		chr14	+	chr14:105179647-105179785	chr14:105179647-105179781		chr14:105179782-105179785	chr14:105179785-105179786		NA	83.33	90.91	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	NA	80.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.45	100.00	100.00	87.50	100.00	100.00	100.00	100.00	95.45	100.00	100.00	0.00	0.569386	0.834831
N	alternative_acceptor	ELL2	chr5	-	chr5:95226112-95226806;chr5:95225973-95226806	chr5:95224835-95226806		chr5:95224835-95225972;chr5:95225973-95226111	chr5:95224834-95224835;chr5:95225972-95225973		84.31	93.75	78.73	92.86	93.33	96.88	100.00	98.33	99.10	98.54	97.24	98.78	95.45	99.00	97.81	97.39	96.99	98.25	NA	85.82	96.23	78.35	82.00	76.83	100.00	88.95	84.71	93.38	91.84	95.06	88.89	81.14	100.00	80.79	80.15	77.18	100.00	88.92	-11.08	0.045611	0.570243
K	alternative_last_exon	WHSC1L1	chr8	-	chr8:38175706-38176412;chr8:38173561-38176412	chr8:38175557-38176412	chr8:38173430-38173560	chr8:38173935-38175556			83.33	92.31	72.41	NA	100.00	NA	76.47	66.67	72.00	71.43	71.43	NA	81.25	60.00	67.86	84.62	80.95	70.00	90.00	80.00	100.00	NA	93.33	NA	100.00	84.62	80.77	NA	94.12	100.00	NA	80.95	100.00	90.00	81.25	90.91	91.16	80.00	-11.16	0.042904	0.227559
K	coord_cassette	PEPD	chr19	-	chr19:33904550-33968951	chr19:33904550-33953900;chr19:33953948-33954892;chr19:33954969-33968951		chr19:33953901-33953947;chr19:33954893-33954968			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.48	100.00	100.00	100.00	100.00	100.00	98.75	99.08	95.65	100.00	100.00	100.00	100.00	100.00	100.00	90.32	100.00	100.00	100.00	98.11	100.00	97.50	100.00	100.00	99.21	98.96	100.00	100.00	0.00	0.631039	0.795482
K	intron_retention		chr19	-	chr19:4454091-4457611				chr19:4454090-4454091;chr19:4457611-4457612		0.00	6.67	2.94	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	0.00	0.00	0.00	0.00	3.03	7.69	0.00	0.00	0.00	7.18	0.00	-7.18	0.320138	1.000000
K	intron_retention	ILKAP	chr2	-	chr2:239079318-239079583				chr2:239079317-239079318;chr2:239079583-239079584		0.00	1.47	7.32	4.59	2.15	4.19	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	2.52	8.33	5.95	2.94	2.17	0.00	2.80	11.76	0.00	3.70	0.00	2.56	7.69	6.38	3.57	4.55	2.44	6.06	2.00	8.01	6.01	0.448388	1.000000
N	alternative_donor	FMNL1	chr17	+	chr17:43321393-43321542	chr17:43321395-43321542		chr17:43321393-43321394	chr17:43321392-43321393		1.97	1.95	1.60	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.85	0.00	0.00	0.00	0.95	0.93	0.00	0.82	0.00	10.71	1.25	1.82	2.30	0.57	0.00	2.10	1.28	0.00	0.82	1.98	0.79	0.00	1.10	1.10	0.575439	0.799662
K	jcn_only_AD	NARF	chr17	+	chr17:80439088-80441591	chr17:80441181-80441591					4.44	5.81	6.32	NA	4.76	3.85	3.33	12.50	12.90	0.00	0.00	0.00	0.00	6.25	9.52	0.00	10.34	NA	3.64	6.25	6.67	10.00	0.00	8.00	0.00	11.76	9.72	0.00	15.38	8.33	6.82	7.22	9.43	6.25	8.70	12.00	3.49	6.54	3.05	0.056649	0.535425
K	intron_retention	RPL17,RPL17-C18orf32	chr18	-	chr18:47017955-47018644				chr18:47017954-47017955;chr18:47018644-47018645		18.18	23.33	25.71	8.00	17.95	5.26	15.00	NA	14.29	20.59	23.81	27.78	13.89	7.14	18.18	10.53	18.75	17.39	25.00	18.75	24.32	21.05	24.44	14.29	25.00	15.38	31.82	20.00	25.71	15.00	38.10	34.38	23.08	24.14	16.67	14.63	23.20	18.18	-5.02	0.814561	1.000000
K	intron_retention	NEU1	chr6	-	chr6:31828042-31828215				chr6:31828041-31828042;chr6:31828215-31828216		4.60	8.91	4.35	7.14	3.12	7.69	0.47	0.00	0.00	1.09	0.73	0.00	1.04	0.00	1.77	0.75	0.56	1.05	1.41	3.75	2.33	5.77	2.65	3.66	0.00	3.00	3.12	0.00	2.31	1.49	7.12	8.21	9.21	5.14	3.72	3.30	1.23	3.38	2.15	0.971722	1.000000
N	alternative_donor	FIG4	chr6	+	chr6:110107653-110110796	chr6:110110117-110110796		chr6:110107653-110110116	chr6:110107652-110107653		4.35	1.82	7.14	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.76	NA	0.00	NA	0.00	4.35	0.00	NA	0.00	NA	0.00	NA	3.23	NA	0.00	0.00	0.00	3.03	0.00	6.67	5.56	5.88	0.00	0.00	0.00	0.255314	0.624867
N	alternative_acceptor	PIP4K2A	chr10	-	chr10:22826211-22828899	chr10:22828003-22828899		chr10:22826211-22828002	chr10:22826210-22826211		4.88	0.00	9.38	NA	0.00	NA	0.00	1.61	4.35	0.00	1.61	0.00	2.00	1.41	4.17	0.00	1.69	0.00	NA	5.88	NA	NA	4.17	NA	NA	5.81	6.67	0.00	4.35	0.00	6.25	4.76	5.56	4.76	4.76	8.33	1.00	5.34	4.34	0.182007	0.660713
N	jcn_only_AD	ITGAX	chr16	+	chr16:31388560-31390888;chr16:31388587-31390888;chr16:31388555-31390888	chr16:31388595-31390888		chr16:31388555-31388559;chr16:31388560-31388586;chr16:31388587-31388594	chr16:31388554-31388555;chr16:31388559-31388560;chr16:31388586-31388587		0.00	0.00	5.36	4.26	4.29	4.55	0.96	0.00	0.00	1.42	0.00	0.00	1.26	0.00	0.00	2.05	1.26	1.42	0.00	2.70	0.00	3.90	3.81	3.05	0.00	0.00	1.79	0.00	3.02	2.20	0.00	1.23	0.00	2.88	5.23	2.86	0.00	0.00	0.00	0.879142	0.939418
N	alternative_acceptor	RASSF4	chr10	+	chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45479469		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		64.17	67.74	65.78	NA	NA	NA	80.95	74.36	76.78	81.12	87.18	85.85	82.55	73.70	75.58	78.70	86.08	79.69	NA	66.32	75.00	79.17	75.68	66.67	91.67	69.18	66.24	74.65	70.97	72.13	92.31	80.88	NA	81.58	75.68	74.65	81.75	71.44	-10.31	0.290065	0.709013
K	jcn_only_AD	BORCS8	chr19	-	chr19:19297815-19303338	chr19:19297815-19302889		chr19:19302890-19303338	chr19:19303338-19303339		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	94.74	96.00	100.00	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.657607
K	cassette	BNIP2	chr15	-	chr15:59956320-59960301	chr15:59956320-59957548;chr15:59957642-59960301		chr15:59957549-59957641			0.00	0.00	4.17	NA	0.00	NA	0.00	3.33	3.33	0.00	1.35	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	5.26	7.69	0.00	0.00	0.00	NA	9.52	6.25	0.00	0.00	0.00	9.09	3.70	0.00	2.50	0.00	0.00	0.00	4.29	4.29	0.026292	0.412736
K	intron_retention		chr7	-	chr7:150774115-150774187				chr7:150774114-150774115;chr7:150774187-150774188		35.71	20.92	18.60	29.27	31.91	25.73	0.00	0.00	0.00	6.67	0.00	0.00	5.56	NA	11.54	5.26	4.55	NA	21.08	18.18	19.39	41.67	28.33	30.00	16.26	23.08	22.64	27.27	19.15	33.33	42.31	40.00	20.48	28.57	23.81	24.44	18.37	23.08	4.71	0.476534	1.000000
N	alternative_donor	HMGB2	chr4	-	chr4:174254821-174255396;chr4:174254821-174255007	chr4:174254821-174255422		chr4:174255008-174255396;chr4:174255397-174255422	chr4:174255396-174255397;chr4:174255422-174255423		91.67	100.00	90.91	NA	NA	NA	96.49	95.00	96.43	92.86	96.36	NA	92.11	95.00	92.50	90.48	95.45	NA	NA	91.67	NA	NA	NA	NA	85.71	84.62	100.00	NA	94.74	NA	90.91	100.00	NA	NA	100.00	NA	94.30	91.67	-2.63	0.571822	0.799136
K	cassette	ARPC1B	chr7	+	chr7:98972405-98983324	chr7:98972405-98974980;chr7:98975079-98983324		chr7:98974981-98975078			3.12	6.48	6.15	4.41	7.51	6.25	5.71	5.63	6.79	5.77	5.19	4.55	4.31	4.30	6.07	5.56	5.49	5.33	2.90	2.06	4.29	3.37	3.26	4.76	10.77	5.56	4.53	3.46	4.14	6.11	3.40	3.76	2.81	3.65	4.91	5.05	5.01	3.85	-1.16	0.305220	0.709176
N	alternative_donor	PPP6R2	chr22	+	chr22:50882547-50882627	chr22:50882555-50882627		chr22:50882547-50882554	chr22:50882546-50882547		1.89	0.00	2.78	0.00	1.37	2.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	NA	0.00	2.27	1.06	3.12	5.00	0.00	1.29	4.76	1.69	0.00	2.94	0.00	6.00	1.72	3.52	3.57	3.23	6.90	0.00	2.08	2.08	0.184835	0.563271
N	jcn_only_AD	TLN1	chr9	-	chr9:35717784-35718808	chr9:35717784-35718352		chr9:35718353-35718808	chr9:35718808-35718809		2.44	0.00	3.33	NA	NA	NA	0.00	0.00	0.00	3.70	0.00	1.79	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	NA	0.00	6.98	0.00	5.00	0.00	5.71	0.00	0.00	0.00	0.594226	0.799292
K	cassette	GGCX	chr2	-	chr2:85786199-85788508	chr2:85786199-85787937;chr2:85788109-85788508		chr2:85787938-85788108			64.71	64.71	70.59	NA	55.00	45.45	80.00	78.26	86.67	75.00	70.97	82.35	77.42	82.35	79.17	83.33	72.00	75.00	81.82	84.62	63.64	NA	81.82	NA	NA	NA	84.62	NA	80.00	NA	78.57	65.22	65.00	NA	78.57	75.00	77.42	78.57	1.15	0.463126	0.759738
N	jcn_only_AA	ETV5	chr3	-	chr3:185813103-185823093;chr3:185813940-185823093;chr3:185802070-185823093;chr3:185813943-185823093;chr3:185822362-185823093	chr3:185798965-185823093					45.16	9.62	80.00	0.00	0.00	NA	84.29	70.37	82.35	75.61	64.86	73.33	77.66	59.72	90.00	56.25	62.90	28.57	0.00	38.89	0.00	NA	31.25	NA	0.00	62.50	57.69	36.84	31.25	20.00	NA	NA	0.00	41.94	48.84	46.67	4.81	59.72	54.91	0.178960	0.663989
K	jcn_only_AA	MGAT4A	chr2	-	chr2:99237969-99242185	chr2:99242056-99242185		chr2:99237969-99242055	chr2:99237968-99237969		100.00	100.00	90.57	100.00	100.00	96.77	90.91	94.32	91.11	100.00	89.36	NA	93.44	92.54	87.50	100.00	93.33	NA	100.00	90.91	86.21	NA	93.75	NA	100.00	88.89	91.89	94.12	90.91	100.00	90.00	100.00	100.00	100.00	87.50	100.00	100.00	91.72	-8.28	0.078018	0.663989
N	intron_retention		chrX	+	chrX:54842112-54842313				chrX:54842111-54842112;chrX:54842313-54842314		89.74	100.00	94.29	NA	85.71	100.00	NA	87.10	100.00	NA	NA	NA	100.00	86.36	100.00	NA	NA	NA	92.00	100.00	100.00	NA	100.00	90.00	100.00	94.29	93.33	NA	100.00	80.00	86.67	95.65	100.00	NA	100.00	100.00	100.00	88.42	-11.58	0.122001	1.000000
K	alternative_donor	TRAPPC5	chr19	+	chr19:7745913-7747127;chr19:7745765-7747127	chr19:7745936-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		11.54	1.75	0.00	0.00	0.00	10.00	2.70	3.85	5.88	7.14	6.45	0.00	2.33	0.00	0.00	3.12	3.85	0.00	1.27	0.00	2.08	0.00	3.08	0.00	4.55	5.88	4.00	0.00	4.76	0.00	0.00	4.00	3.51	0.00	5.00	0.00	2.52	1.93	-0.59	0.675857	0.858877
N	intron_retention		chr16	+	chr16:30779644-30779770				chr16:30779643-30779644;chr16:30779770-30779771		100.00	100.00	95.92	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.30	100.00	100.00	100.00	100.00	NA	NA	91.67	NA	NA	100.00	100.00	100.00	84.38	95.24	NA	100.00	NA	92.00	93.75	NA	96.15	96.88	100.00	100.00	96.00	-4.00	0.264122	1.000000
N	jcn_only_AA		chr19	+	chr19:18286508-18287971;chr19:18286508-18287917;chr19:18286508-18287958	chr19:18286508-18287857					0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	16.67	0.00	NA	0.00	NA	5.41	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.237595	0.663989
K	intron_retention		chr6	-	chr6:41653976-41654831				chr6:41653975-41653976;chr6:41654831-41654832		11.11	0.00	4.76	0.00	2.27	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.77	NA	0.00	0.00	0.00	0.00	1.85	NA	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	STK11	chr19	+	chr19:1223172-1226452;chr19:1223172-1226457	chr19:1223172-1223636		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		20.00	9.33	17.14	10.00	6.98	5.26	4.35	0.00	5.88	6.67	3.70	0.00	5.56	9.09	7.41	4.55	5.88	NA	6.00	12.50	6.52	NA	16.00	NA	9.43	16.67	11.43	14.29	13.64	7.14	11.11	15.00	7.94	16.67	12.50	17.65	6.97	11.80	4.83	0.181459	0.660713
K	intron_retention	NDUFB10	chr16	+	chr16:2011293-2011497				chr16:2011292-2011293;chr16:2011497-2011498		5.62	1.40	2.78	3.23	2.26	0.71	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	1.37	4.08	1.73	1.96	2.29	0.00	1.24	0.00	5.32	0.00	0.72	0.00	6.25	3.67	2.42	1.45	1.94	1.10	1.31	2.04	0.73	0.506102	1.000000
K	cassette	EXOSC1	chr10	-	chr10:99201017-99205488	chr10:99201017-99202993;chr10:99203069-99205488		chr10:99202994-99203068			94.12	100.00	92.31	NA	100.00	NA	92.31	100.00	95.65	100.00	95.24	NA	100.00	100.00	96.55	94.12	100.00	NA	100.00	90.00	100.00	100.00	96.00	100.00	NA	100.00	95.65	NA	100.00	100.00	NA	88.00	100.00	100.00	95.65	100.00	100.00	100.00	0.00	0.542090	0.813579
K	intron_retention		chr1	-	chr1:1686138-1686812				chr1:1686137-1686138;chr1:1686812-1686813		12.43	26.53	21.95	NA	6.25	7.14	0.96	0.99	1.17	0.00	3.57	0.00	0.00	1.36	2.87	2.17	0.00	6.25	10.34	9.77	6.00	7.14	7.14	13.89	30.77	7.50	14.52	8.11	4.55	6.67	7.87	14.85	15.79	27.27	20.00	13.33	13.06	7.69	-5.38	0.488645	1.000000
K	alternative_first_exon	TNIP1	chr5	-	chr5:150443309-150472998;chr5:150443309-150460440;chr5:150443309-150466645	chr5:150443309-150444520	chr5:150460441-150460645;chr5:150466646-150466719	chr5:150444521-150444692			76.15	92.31	80.59	88.68	91.18	79.41	88.46	81.50	82.93	86.78	83.54	87.03	88.89	82.38	82.76	82.00	80.43	85.11	NA	77.89	80.18	83.06	82.11	87.47	100.00	79.19	78.73	80.74	82.26	84.41	73.93	77.09	70.00	86.21	79.43	84.20	88.89	78.54	-10.35	0.129857	0.308050
K	jcn_only_AD	PTGS1	chr9	+	chr9:125148901-125152476	chr9:125149012-125152476		chr9:125148901-125149011	chr9:125148900-125148901		76.19	84.52	81.03	NA	79.49	NA	88.66	NA	NA	78.79	82.00	77.78	87.14	81.82	NA	78.26	81.43	78.95	85.71	84.21	92.31	86.67	83.93	93.75	100.00	100.00	82.05	86.67	91.49	NA	100.00	86.67	84.21	79.41	86.00	81.82	86.42	84.21	-2.22	0.990101	0.995537
K	intron_retention	DNAJB12	chr10	-	chr10:74096455-74097959				chr10:74096454-74096455;chr10:74097959-74097960		12.20	0.00	7.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	3.03	10.26	3.57	2.13	4.44	2.04	0.00	1.35	1.35	0.571891	1.000000
N	cassette	QARS	chr3	-	chr3:49137081-49137393	chr3:49137081-49137193;chr3:49137287-49137393		chr3:49137194-49137286			100.00	100.00	95.00	90.91	93.18	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	94.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	94.87	83.33	100.00	93.33	95.65	100.00	100.00	0.00	0.474956	0.770335
N	jcn_only_AA	PRMT2	chr21	+	chr21:48055676-48056141;chr21:48055676-48056350;chr21:48055676-48056807	chr21:48055676-48056355					0.00	28.57	9.76	0.00	0.00	7.14	10.23	11.25	6.78	9.09	8.75	7.50	6.67	8.64	10.81	9.68	10.39	7.32	0.00	3.85	10.00	18.18	10.00	26.47	0.00	13.95	0.00	0.00	17.14	7.50	7.14	8.33	12.50	0.00	19.44	11.76	8.45	7.89	-0.56	0.661075	0.848430
K	intron_retention	FDFT1	chr8	+	chr8:11687930-11689026				chr8:11687929-11687930;chr8:11689026-11689027		14.29	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	5.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
N	jcn_only_AD	AHNAK	chr11	-	chr11:62304040-62312388;chr11:62304040-62323659;chr11:62304040-62313037;chr11:62304040-62313016;chr11:62304040-62313215	chr11:62304040-62314131		chr11:62312389-62313016;chr11:62313017-62313037;chr11:62313038-62313215;chr11:62313216-62314131;chr11:62314132-62323659	chr11:62313016-62313017;chr11:62313037-62313038;chr11:62313215-62313216;chr11:62314131-62314132;chr11:62323659-62323660		100.00	95.65	100.00	100.00	95.24	100.00	95.74	100.00	100.00	95.06	91.06	95.95	95.31	95.83	NA	95.16	95.03	97.50	93.94	100.00	100.00	100.00	97.80	95.00	100.00	100.00	NA	100.00	88.68	100.00	100.00	NA	92.68	97.78	93.75	96.30	95.48	100.00	4.52	0.013923	0.285457
K	intron_retention	UBB	chr17	+	chr17:16285445-16285672				chr17:16285444-16285445;chr17:16285672-16285673		29.36	25.52	28.04	25.92	25.82	23.53	26.98	27.61	27.49	27.29	28.42	26.75	27.34	27.40	27.93	27.44	26.87	27.16	22.91	24.98	25.26	24.32	24.95	26.32	20.22	28.77	28.10	25.57	26.69	24.96	23.93	25.21	23.05	25.84	25.00	26.76	24.29	27.50	3.22	0.532604	1.000000
N	jcn_only_AA	DENND3,RIPK2	chr8	+	chr8:142195378-142199084	chr8:142195378-142198546		chr8:142198547-142199084	chr8:142199084-142199085		0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	8.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	4.44	1.30	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.201636	0.663989
K	alternative_first_exon	EGLN2,RAB4B-EGLN2	chr19	+	chr19:41305736-41306243,chr19:41305612-41306243,chr19:41305874-41306243;chr19:41305544-41306243;chr19:41305168-41306243	chr19:41292884-41306243	chr19:41305420-41305543;chr19:41305092-41305167	chr19:41292753-41292883			0.00	0.00	0.00	NA	0.00	NA	1.92	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	NA	0.00	5.56	0.00	0.00	0.00	0.00	0.00	7.89	0.00	0.00	0.00	0.00	3.70	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.864557	0.905242
K	intron_retention	VPS28	chr8	-	chr8:145650203-145650328				chr8:145650202-145650203;chr8:145650328-145650329		4.90	5.28	13.13	7.25	7.51	5.00	0.58	0.00	1.05	0.00	1.30	1.43	0.80	2.27	1.54	1.11	2.11	0.00	3.86	7.55	4.43	6.98	7.19	8.89	6.61	7.06	5.99	8.14	7.18	3.94	8.62	7.38	5.18	5.88	7.45	4.71	4.52	5.98	1.46	0.853361	1.000000
K	jcn_only_AA	APTX	chr9	-	chr9:32973651-32974455	chr9:32973687-32974455		chr9:32973651-32973686	chr9:32973650-32973651		8.33	0.00	0.00	0.00	6.06	9.68	13.33	NA	7.14	0.00	0.00	NA	0.00	0.00	0.00	9.09	9.09	NA	12.50	0.00	3.70	16.67	7.69	13.33	0.00	0.00	13.64	0.00	14.29	7.41	11.76	3.70	7.69	0.00	14.29	4.35	3.85	0.00	-3.85	0.676225	0.855556
N	alternative_acceptor	CCDC88A	chr2	-	chr2:55518301-55518811;chr2:55506167-55518811	chr2:55515492-55518811		chr2:55506167-55515491;chr2:55515492-55518300	chr2:55506166-55506167;chr2:55515491-55515492		17.65	37.50	8.70	NA	35.29	NA	5.26	7.69	NA	NA	7.14	NA	5.56	6.67	0.00	NA	3.85	NA	36.36	7.14	33.33	NA	14.29	NA	40.00	11.76	16.67	NA	19.05	NA	NA	9.09	NA	11.11	12.00	NA	36.36	7.69	-28.67	0.140007	0.638239
N	cassette	NDUFC1	chr4	-	chr4:140217115-140223569;chr4:140217115-140221755;chr4:140217522-140223569;chr4:140217111-140223569	chr4:140217115-140218538,chr4:140217522-140218538,chr4:140217111-140218538;chr4:140218598-140223569,chr4:140218598-140221755		chr4:140218539-140218597			2.27	4.00	0.00	30.00	21.43	14.29	6.67	9.09	10.34	23.08	10.53	30.97	5.00	12.00	12.20	18.52	18.75	39.02	5.00	3.23	10.34	25.00	9.52	25.42	0.00	14.71	3.33	20.00	14.29	20.37	13.04	7.69	5.26	15.38	7.69	17.07	5.00	10.54	5.54	0.082365	0.641134
N	jcn_only_AA	ITSN1	chr21	+	chr21:35206729-35208744	chr21:35206729-35208604		chr21:35208605-35208744	chr21:35208744-35208745		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.00	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	PREB	chr2	-	chr2:27354377-27354877	chr2:27354377-27354541;chr2:27354700-27354877		chr2:27354542-27354699			80.00	60.00	72.41	NA	77.78	NA	100.00	88.89	100.00	100.00	100.00	NA	90.62	100.00	88.89	91.67	89.47	NA	66.67	78.95	82.35	78.57	55.00	84.62	NA	100.00	85.71	91.67	78.57	87.50	69.23	64.29	76.92	73.68	73.08	88.46	76.92	84.44	7.52	0.438567	0.743271
K	cassette	CNIH4	chr1	+	chr1:224553694-224563496	chr1:224553694-224558984;chr1:224559126-224563496		chr1:224558985-224559125			92.55	100.00	90.20	92.54	95.45	91.67	92.11	97.10	95.65	94.64	92.45	100.00	94.29	95.65	93.67	95.71	97.78	96.77	92.31	93.88	96.63	93.62	95.24	91.18	92.31	94.53	94.96	93.75	95.83	94.29	95.60	93.83	86.96	93.75	95.83	93.62	92.31	95.06	2.75	0.341852	0.709176
K	intron_retention		chr1	+	chr1:2492154-2493111				chr1:2492153-2492154;chr1:2493111-2493112		17.65	8.29	18.18	7.94	6.51	3.33	1.80	3.17	2.50	2.50	5.00	4.76	4.80	1.41	8.65	3.88	4.05	0.00	6.08	16.00	4.76	14.42	13.36	19.15	10.50	13.92	17.81	8.89	8.19	9.85	9.20	16.24	8.70	15.69	14.08	14.43	7.18	11.56	4.37	0.508379	1.000000
N	alternative_donor	PLXND1	chr3	-	chr3:129288801-129289432;chr3:129288801-129289628	chr3:129288801-129289721		chr3:129289433-129289628;chr3:129289629-129289721	chr3:129289628-129289629;chr3:129289721-129289722		2.94	8.06	1.47	NA	NA	NA	0.00	0.00	0.00	0.99	0.00	0.00	0.00	0.00	1.28	1.39	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.622828	0.828776
N	jcn_only_AA	CPNE1	chr20	-	chr20:34214749-34215201;chr20:34214726-34215201;chr20:34214775-34215201	chr20:34214723-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		0.00	0.00	0.00	0.00	0.00	0.00	75.51	68.18	68.29	66.67	77.27	81.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.943998	0.981281
K	cassette	PITPNA	chr17	-	chr17:1444935-1451589	chr17:1444935-1446313;chr17:1446322-1451589		chr17:1446314-1446321			100.00	100.00	97.80	100.00	100.00	NA	100.00	99.06	100.00	99.16	99.51	100.00	98.50	100.00	98.98	100.00	99.39	100.00	100.00	100.00	97.37	100.00	99.12	100.00	NA	100.00	98.71	98.23	98.91	98.40	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.333357	0.709176
N	cassette	SH3KBP1	chrX	-	chrX:19560312-19568091	chrX:19560312-19564039;chrX:19564169-19568091		chrX:19564040-19564168			97.92	100.00	100.00	NA	100.00	NA	100.00	98.08	100.00	94.64	100.00	95.16	97.39	100.00	96.49	98.51	97.04	98.81	100.00	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	100.00	100.00	100.00	0.00	0.710326	0.896124
K	intron_retention	PABPC4	chr1	-	chr1:40028089-40029285				chr1:40028088-40028089;chr1:40029285-40029286		5.88	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	4.26	0.00	1.45	0.98	1.83	0.00	9.76	0.00	0.00	0.00	0.00	5.36	1.56	0.85	2.22	2.88	0.93	0.00	4.81	4.81	0.155882	1.000000
N	alternative_donor	HGS	chr17	+	chr17:79663034-79663386;chr17:79663030-79663386	chr17:79663072-79663386		chr17:79663030-79663033;chr17:79663034-79663071	chr17:79663029-79663030;chr17:79663033-79663034		4.00	5.00	5.00	0.00	9.68	NA	0.00	0.00	1.67	0.00	0.00	0.00	1.82	0.00	1.43	1.02	0.00	0.00	0.00	3.70	4.00	3.92	5.97	5.08	23.81	1.61	5.80	1.96	8.11	5.56	3.85	4.82	0.00	5.00	4.48	4.49	0.91	2.66	1.75	0.486815	0.745156
K	jcn_only_AA	ARFGAP1,OGFR	chr20	+	chr20:61917066-61917723	chr20:61917066-61917717		chr20:61917718-61917723	chr20:61917723-61917724		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.92	95.00	97.44	100.00	100.00	94.59	100.00	93.33	100.00	100.00	100.00	100.00	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.194977	0.663989
K	cassette	DLG4	chr17	-	chr17:7094678-7096263	chr17:7094678-7095211;chr17:7095322-7096263		chr17:7095212-7095321			53.33	61.11	51.52	NA	42.11	NA	57.14	NA	30.00	NA	50.00	NA	63.64	44.44	NA	NA	47.37	NA	NA	41.18	43.75	NA	42.86	NA	33.33	54.55	45.16	NA	37.50	NA	33.33	40.00	45.45	60.00	56.25	50.00	57.14	44.44	-12.70	0.357481	0.709176
N	jcn_only_AA	TRIP10	chr19	+	chr19:6750645-6751232;chr19:6750645-6751041;chr19:6750645-6751365;chr19:6750645-6751073	chr19:6750645-6751044		chr19:6751042-6751044;chr19:6751045-6751073;chr19:6751074-6751232;chr19:6751233-6751365	chr19:6751044-6751045;chr19:6751073-6751074;chr19:6751232-6751233;chr19:6751365-6751366		1.75	0.00	2.39	2.95	0.00	2.30	0.00	3.61	1.48	3.92	7.69	3.23	0.00	0.00	2.37	0.75	5.88	3.28	4.05	1.67	3.00	1.79	0.00	2.40	0.00	0.00	1.03	2.46	0.00	1.88	3.01	3.43	0.00	7.29	2.82	2.66	0.00	1.71	1.71	0.298300	0.663989
K	cassette	STAT6	chr12	-	chr12:57493874-57496072	chr12:57493874-57494628;chr12:57494683-57496072		chr12:57494629-57494682			0.00	0.00	0.00	NA	0.00	NA	2.63	5.83	2.08	7.32	6.85	2.94	3.37	3.01	0.69	7.25	7.46	8.62	0.00	1.20	5.26	0.00	1.75	2.13	0.00	2.04	0.00	3.70	2.22	3.85	0.00	0.00	0.00	3.70	2.63	2.08	0.00	1.62	1.62	0.382810	0.709410
N	cassette	MPV17	chr2	-	chr2:27535977-27545314;chr2:27535942-27545314	chr2:27535942-27539944,chr2:27535977-27539944;chr2:27540041-27545314		chr2:27539945-27540040			0.00	0.00	0.00	NA	0.00	NA	1.16	0.00	1.43	0.00	1.01	1.49	1.76	0.00	1.00	2.78	1.37	3.33	0.00	0.00	0.00	0.00	0.00	5.26	NA	0.00	0.00	0.00	1.45	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.58	0.00	-0.58	0.194850	0.709176
N	alternative_acceptor	STARD3	chr17	+	chr17:37814776-37814961;chr17:37814776-37814991	chr17:37814776-37814974		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		90.00	85.19	84.44	NA	78.12	NA	100.00	94.12	95.00	95.24	96.23	100.00	95.45	88.46	93.33	100.00	97.37	100.00	91.67	86.96	93.75	80.95	84.62	80.00	NA	81.82	87.50	94.44	90.62	80.00	63.64	78.85	77.78	85.71	86.05	88.00	91.67	87.71	-3.96	0.347085	0.709013
N	jcn_only_AA	MED8	chr1	-	chr1:43852664-43853173;chr1:43852670-43853173	chr1:43852638-43853173		chr1:43852638-43852663;chr1:43852664-43852669	chr1:43852637-43852638;chr1:43852663-43852664		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.13	1.89	0.00	0.00	2.44	2.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.180978	0.663989
N	jcn_only_AD	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007641;chr22:51007511-51007595;chr22:51007511-51007764	chr22:51007511-51007604		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		0.00	8.33	7.14	NA	8.33	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	15.91	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	7.14	4.00	8.57	NA	NA	NA	4.17	0.00	-4.17	0.453091	0.707652
K	intron_retention	FLOT2	chr17	-	chr17:27209710-27210125				chr17:27209709-27209710;chr17:27210125-27210126		3.12	25.00	8.39	NA	NA	NA	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	1.38	0.00	0.00	0.00	NA	4.35	6.06	NA	0.00	0.00	16.67	2.44	8.21	NA	NA	NA	NA	10.39	NA	0.00	5.00	0.00	8.34	2.44	-5.90	0.535204	1.000000
K	intron_retention		chr11	+	chr11:67201956-67202052				chr11:67201955-67201956;chr11:67202052-67202053		4.88	3.94	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00	0.00	0.00	1.61	0.00	6.67	0.00	1.82	0.00	0.00	0.00	6.82	2.08	1.50	0.00	0.00	0.00	1.20	0.00	-1.20	0.605739	1.000000
N	cassette	FAM96A	chr15	-	chr15:64367737-64380885;chr15:64365228-64380885	chr15:64367737-64373300,chr15:64365228-64373300;chr15:64373351-64380885		chr15:64373301-64373350			74.12	83.19	79.44	86.21	83.76	93.75	79.33	75.68	72.97	73.27	75.00	77.63	80.61	74.14	77.00	79.13	69.66	71.15	80.88	81.82	73.63	82.46	81.82	83.33	70.00	82.72	82.73	72.92	86.52	81.63	76.67	79.37	73.97	85.11	87.79	82.00	79.97	76.18	-3.79	0.857775	0.951512
N	alternative_acceptor	UBXN11	chr1	-	chr1:26597635-26609139;chr1:26609087-26609139	chr1:26609061-26609139		chr1:26597635-26609060;chr1:26609061-26609086	chr1:26597634-26597635;chr1:26609060-26609061		96.00	95.93	87.88	96.34	99.26	98.39	98.10	75.76	NA	98.37	94.95	97.22	98.46	NA	83.33	96.55	98.35	95.40	99.02	90.32	98.50	98.00	99.38	97.14	98.07	NA	94.29	98.55	98.34	100.00	89.66	92.59	97.77	98.65	98.88	98.73	98.08	89.99	-8.09	0.102906	0.598353
N	jcn_only_AA	ARPC5	chr1	-	chr1:183594042-183599595;chr1:183592586-183599595;chr1:183592607-183599595	chr1:183596730-183599595		chr1:183592586-183592606;chr1:183592607-183594041;chr1:183594042-183596729	chr1:183592585-183592586;chr1:183592606-183592607;chr1:183594041-183594042		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.39	99.34	100.00	98.98	100.00	100.00	100.00	100.00	99.38	99.63	100.00	99.48	96.27	98.99	98.54	99.14	93.24	99.59	98.68	98.91	99.18	97.14	100.00	99.64	100.00	98.22	99.04	98.17	100.00	100.00	0.00	0.428965	0.698177
N	alternative_acceptor		chr19	+	chr19:39395761-39395860	chr19:39395761-39395841		chr19:39395842-39395860	chr19:39395860-39395861		100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.490957	0.790847
K	cassette	GNAS	chr20	+	chr20:57470740-57478585;chr20:57470740-57475003;chr20:57470740-57478582	chr20:57470740-57473995;chr20:57474041-57478582,chr20:57474041-57478585,chr20:57474041-57475003		chr20:57473996-57474040			23.92	25.57	22.38	24.14	23.05	29.63	36.47	47.74	38.36	36.50	34.95	36.93	39.64	43.92	43.78	41.86	36.93	36.82	29.13	30.65	27.23	25.72	24.12	26.16	27.78	32.28	26.30	31.53	28.06	31.06	24.72	21.70	23.08	29.54	31.03	28.42	28.45	31.46	3.01	0.475718	0.770451
K	jcn_only_AA	CBX3	chr7	+	chr7:26246131-26248085	chr7:26246131-26248012		chr7:26248013-26248085	chr7:26248085-26248086		98.59	100.00	97.95	95.65	94.05	100.00	97.24	98.98	98.91	91.89	95.81	94.44	96.77	98.06	96.70	91.72	89.95	94.29	93.94	98.31	98.59	96.19	96.62	97.33	100.00	99.41	99.04	93.59	93.28	97.01	99.48	98.54	97.40	95.80	96.88	94.89	97.32	98.78	1.47	0.243100	0.663989
K	jcn_only_AD	CDK5RAP3,RP11-6N17.9	chr17	+	chr17:46051060-46051296;chr17:46051063-46051296	chr17:46051017-46051296		chr17:46051017-46051059;chr17:46051060-46051062	chr17:46051016-46051017;chr17:46051059-46051060		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	93.94	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.51	95.65	100.00	100.00	100.00	100.00	94.64	96.97	100.00	96.55	100.00	96.43	94.64	98.59	100.00	100.00	0.00	0.373901	0.657607
K	intron_retention	H2AFY	chr5	-	chr5:134681748-134688635				chr5:134681747-134681748;chr5:134688635-134688636		5.50	3.28	18.75	4.00	3.39	NA	0.41	1.39	1.89	0.40	1.13	0.00	3.38	0.00	6.25	2.73	1.76	0.52	4.35	3.23	4.00	8.20	12.57	3.03	NA	18.18	11.32	8.00	8.61	2.70	9.09	11.43	0.00	13.83	15.71	4.94	3.28	4.37	1.09	0.852041	1.000000
N	alternative_acceptor	TRAPPC3	chr1	-	chr1:36602918-36603396	chr1:36602924-36603396		chr1:36602918-36602923	chr1:36602917-36602918		100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.80	97.14	100.00	100.00	100.00	100.00	100.00	0.00	0.205135	0.668672
N	alternative_acceptor	CCT8	chr21	-	chr21:30434718-30434810	chr21:30434737-30434810		chr21:30434718-30434736	chr21:30434717-30434718		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	GPI	chr19	+	chr19:34872425-34884152	chr19:34873555-34884152		chr19:34872425-34873554	chr19:34872424-34872425		0.00	1.33	0.76	0.00	0.00	NA	0.00	0.00	1.04	0.00	0.00	0.00	0.56	0.00	0.72	0.00	0.00	0.00	4.00	0.00	0.00	0.00	1.02	0.00	6.67	0.00	1.31	0.00	1.14	0.00	0.00	0.00	0.00	1.02	1.03	0.82	0.95	0.00	-0.95	0.115333	0.527991
K	cassette	ZYX	chr7	+	chr7:143079541-143079893	chr7:143079541-143079685;chr7:143079779-143079893		chr7:143079686-143079778			95.65	96.53	96.15	100.00	95.73	NA	99.54	98.89	99.27	99.48	99.32	100.00	99.43	98.72	97.67	100.00	98.93	98.60	95.12	96.06	98.41	95.65	95.36	98.61	87.50	96.89	96.43	96.34	97.55	100.00	93.41	92.62	92.45	95.00	93.94	94.27	95.83	96.47	0.65	0.486684	0.774715
K	intron_retention	PPID	chr4	-	chr4:159630977-159631779				chr4:159630976-159630977;chr4:159631779-159631780		7.87	8.57	5.88	4.08	10.42	0.00	1.69	1.64	0.00	0.00	1.54	2.44	3.92	1.72	2.70	3.39	1.35	0.00	11.11	3.77	5.77	2.70	4.62	6.00	7.69	3.61	11.54	2.86	4.84	3.08	7.02	9.09	13.51	7.50	4.76	7.06	8.13	3.69	-4.44	0.466545	1.000000
N	alternative_donor	FDPS	chr1	+	chr1:155282187-155287731;chr1:155282196-155287731	chr1:155282071-155287731		chr1:155282071-155282186;chr1:155282187-155282195	chr1:155282070-155282071;chr1:155282186-155282187		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.44	0.00	0.00	5.56	21.43	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	28.12	0.00	13.04	0.00	0.00	0.00	0.00	0.00	0.490212	0.745779
N	alternative_acceptor	SYNE2	chr14	+	chr14:23239835-23240017	chr14:23239835-23240013		chr14:23240014-23240017	chr14:23240017-23240018		90.62	88.00	94.20	100.00	94.81	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.30	100.00	91.30	100.00	100.00	100.00	100.00	97.10	100.00	95.24	90.00	94.44	96.00	100.00	94.87	94.74	91.49	100.00	94.44	-5.56	0.364397	0.709013
N	alternative_donor	CAST	chr5	+	chr5:96107400-96108343	chr5:96107407-96108343		chr5:96107400-96107406	chr5:96107399-96107400		97.33	100.00	97.96	97.18	96.92	98.16	98.31	97.22	100.00	100.00	100.00	98.25	95.12	97.40	100.00	96.00	100.00	100.00	98.18	97.26	97.26	100.00	95.24	98.65	100.00	98.78	100.00	97.62	98.08	97.78	97.50	96.49	94.59	100.00	96.08	95.00	98.25	97.37	-0.88	0.908815	0.981916
N	cassette	SDSL	chr12	+	chr12:113860283-113873133;chr12:113866265-113873133;chr12:113867105-113873133	chr12:113860283-113871938,chr12:113867105-113871938,chr12:113866265-113871938;chr12:113872028-113873133		chr12:113871939-113872027			100.00	100.00	100.00	100.00	92.31	NA	100.00	95.77	100.00	96.88	100.00	100.00	100.00	95.45	98.18	100.00	100.00	NA	100.00	100.00	98.48	100.00	100.00	NA	91.30	97.87	97.78	100.00	95.00	NA	95.16	95.16	100.00	100.00	100.00	100.00	100.00	96.82	-3.18	0.511744	0.791208
N	cassette	C1orf43	chr1	-	chr1:154186423-154192894;chr1:154185101-154192817;chr1:154186423-154192817;chr1:154186423-154192311;chr1:154185101-154192311	chr1:154185101-154186932,chr1:154186423-154186932;chr1:154187051-154192894,chr1:154187051-154192817,chr1:154187051-154192311		chr1:154186933-154187050			98.88	100.00	97.78	93.33	100.00	NA	100.00	100.00	97.28	100.00	99.46	99.19	99.40	99.02	98.21	99.38	98.86	100.00	NA	100.00	96.88	97.75	100.00	99.02	NA	98.88	97.25	98.61	100.00	98.31	100.00	97.20	100.00	98.31	100.00	98.73	100.00	99.51	-0.49	0.211554	0.709176
N	jcn_only_AD	OSTF1	chr9	+	chr9:77702912-77732419;chr9:77703652-77732419;chr9:77712188-77732419	chr9:77703643-77732419		chr9:77702912-77703642;chr9:77703643-77703651;chr9:77703652-77712187	chr9:77702911-77702912;chr9:77703642-77703643;chr9:77703651-77703652		96.61	100.00	97.18	100.00	100.00	NA	96.97	96.68	97.45	96.91	95.74	96.86	96.48	96.21	97.77	97.16	97.97	97.06	100.00	96.63	96.00	100.00	95.45	96.67	NA	96.09	95.89	92.86	99.14	97.26	96.04	96.83	100.00	97.03	98.20	95.65	100.00	96.41	-3.59	0.044599	0.497155
N	alternative_acceptor	EIF4G2	chr11	-	chr11:10821304-10821636;chr11:10821322-10821636;chr11:10821157-10821636	chr11:10821331-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		4.00	2.63	3.63	5.26	1.69	NA	0.30	0.42	0.31	0.24	0.21	0.00	0.33	0.45	0.61	0.50	0.21	0.37	0.00	2.73	2.04	2.41	1.58	2.89	NA	2.53	2.26	1.31	1.51	1.06	6.59	4.93	8.33	2.87	2.83	2.43	0.33	2.63	2.30	0.806520	0.929667
N	alternative_donor	TRADD	chr16	-	chr16:67190572-67193740;chr16:67190572-67193727	chr16:67190572-67193576		chr16:67193577-67193727;chr16:67193728-67193740	chr16:67193727-67193728;chr16:67193740-67193741		0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	6.67	0.00	13.04	NA	2.50	0.00	3.85	0.00	1.32	0.00	0.00	NA	NA	NA	8.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	BRD2	chr6	+	chr6:32947910-32948118				chr6:32947909-32947910;chr6:32948118-32948119		2.26	3.64	2.55	0.65	2.67	4.69	0.00	0.46	0.00	0.00	0.00	0.00	0.62	0.00	1.32	0.42	0.89	0.00	4.55	3.51	3.27	1.92	2.93	2.80	8.62	2.03	2.56	2.40	2.37	1.85	4.17	4.06	3.52	4.62	5.02	4.56	3.58	2.14	-1.44	0.649244	1.000000
K	jcn_only_AA	ANP32E	chr1	-	chr1:150195567-150198939	chr1:150195621-150198939		chr1:150195567-150195620	chr1:150195566-150195567		8.33	NA	12.50	NA	9.09	NA	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	0.00	0.00	0.00	5.56	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	3.12	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	ATP5D	chr19	+	chr19:1242609-1244095				chr19:1242608-1242609;chr19:1244095-1244096		5.56	2.03	7.14	2.02	1.94	0.98	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	0.00	1.66	0.00	1.48	0.00	1.90	0.00	1.14	0.00	2.00	0.00	0.00	0.00	4.88	6.45	1.54	0.00	0.00	0.00	1.34	0.00	-1.34	0.949123	1.000000
K	coord_cassette	AHSA1	chr14	+	chr14:77929103-77935419	chr14:77929103-77930940;chr14:77931030-77931881;chr14:77932011-77934425;chr14:77934528-77934799;chr14:77934852-77935419		chr14:77930941-77931029;chr14:77931882-77932010;chr14:77934426-77934527;chr14:77934800-77934851			100.00	93.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_acceptor	C15orf48	chr15	+	chr15:45722854-45722967	chr15:45722854-45722936		chr15:45722937-45722967	chr15:45722967-45722968		9.91	9.30	10.65	16.42	17.98	14.89	10.00	9.41	9.87	7.89	7.33	5.96	7.69	10.02	11.55	10.97	5.38	5.16	9.76	10.62	11.64	15.69	19.70	14.10	NA	12.27	12.29	17.12	17.16	14.43	9.98	10.09	8.70	16.56	18.04	16.37	9.30	10.00	0.70	0.056745	0.570243
N	alternative_donor	RP4-583P15.15,ZGPAT	chr20	+	chr20:62340332-62364570	chr20:62340517-62364570		chr20:62340332-62340516	chr20:62340331-62340332		97.56	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	95.56	100.00	100.00	100.00	97.01	100.00	98.78	-1.22	0.105827	0.514361
K	alternative_first_exon	CAPZB	chr1	-	chr1:19746245-19746518,chr1:19746245-19753926,chr1:19746245-19762388,chr1:19746245-19774968,chr1:19746245-19775001,chr1:19746245-19775658,chr1:19746245-19781251,chr1:19746245-19801224,chr1:19746245-19810377,chr1:19746245-19811403;chr1:19746245-19811929;chr1:19746245-19775327	chr1:19746245-19810683	chr1:19811930-19812007;chr1:19775328-19775824	chr1:19810684-19811158			1.48	7.73	3.07	4.55	7.58	1.41	3.58	1.39	1.55	2.11	4.23	2.45	4.94	0.71	2.69	3.23	6.43	3.76	1.12	0.00	0.00	0.52	0.49	0.37	2.35	0.68	1.24	0.45	1.50	0.65	0.00	1.10	1.14	1.39	1.20	0.68	2.96	0.70	-2.27	0.044442	0.158212
N	jcn_only_AA	NFYB	chr12	-	chr12:104514250-104515017	chr12:104514258-104515017		chr12:104514250-104514257	chr12:104514249-104514250		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	CBWD2,HADHB	chr2	+	chr2:26508440-26512785;chr2:26508440-26512181	chr2:26508440-26510466		chr2:26510467-26512181;chr2:26512182-26512785	chr2:26512181-26512182;chr2:26512785-26512786		4.76	1.57	9.18	0.00	0.56	0.97	0.00	1.85	1.37	0.74	0.00	0.00	0.64	2.08	1.75	1.00	0.79	0.00	0.71	4.76	0.74	2.20	2.48	2.33	0.88	3.23	4.12	1.35	0.57	0.87	4.35	3.45	0.64	4.76	2.84	3.80	0.68	3.79	3.12	0.002499	0.316050
N	cassette	EPSTI1	chr13	-	chr13:43463379-43474445;chr13:43462639-43474445	chr13:43462639-43469144,chr13:43463379-43469144;chr13:43469245-43474445		chr13:43469145-43469244			100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.49	98.80	100.00	100.00	98.23	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.36	100.00	94.74	100.00	95.39	NA	97.01	97.53	96.59	100.00	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.25	-0.75	0.098371	0.675596
K	intron_retention	NUMA1	chr11	-	chr11:71715388-71715685				chr11:71715387-71715388;chr11:71715685-71715686		4.71	2.60	5.17	0.00	0.91	0.00	2.44	1.56	1.23	0.00	1.74	0.00	2.04	0.00	5.49	1.54	0.00	0.82	4.26	2.13	0.00	1.61	10.00	3.00	4.17	0.00	3.64	0.00	2.00	1.37	2.04	3.23	1.64	4.48	6.82	4.27	2.52	1.80	-0.72	0.900890	1.000000
K	intron_retention	FAM192A	chr16	-	chr16:57187719-57188046				chr16:57187718-57187719;chr16:57188046-57188047		90.91	67.86	100.00	100.00	93.94	100.00	89.29	100.00	91.67	NA	88.00	92.31	88.57	88.89	89.66	85.71	92.00	NA	87.50	100.00	100.00	NA	100.00	NA	100.00	92.86	87.10	100.00	100.00	100.00	100.00	100.00	86.67	90.00	95.65	100.00	88.03	96.43	8.40	0.281772	1.000000
N	alternative_acceptor		chr14	+	chr14:104141939-104142031	chr14:104141939-104142025		chr14:104142026-104142031	chr14:104142031-104142032		100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.179402	0.660713
K	cassette	PTOV1	chr19	+	chr19:50358146-50360231	chr19:50358146-50358226;chr19:50358335-50360231		chr19:50358227-50358334			89.66	100.00	100.00	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	TRIM28	chr19	+	chr19:59056465-59056791				chr19:59056464-59056465;chr19:59056791-59056792		5.88	11.11	4.35	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.33	7.14	8.11	0.00	31.25	0.00	2.44	0.00	0.00	0.00	16.67	9.09	NA	0.00	9.38	4.55	5.55	0.00	-5.55	0.672055	1.000000
K	alternative_acceptor	DGKZ	chr11	+	chr11:46389298-46389554	chr11:46389298-46389551		chr11:46389552-46389554	chr11:46389554-46389555		45.45	38.46	55.56	NA	NA	NA	50.00	54.55	52.38	50.00	60.61	NA	40.00	63.16	47.06	52.94	68.75	NA	NA	33.33	NA	NA	50.00	54.55	58.82	50.00	64.00	NA	42.86	NA	NA	52.17	NA	50.00	44.44	38.89	45.00	50.00	5.00	0.728653	0.899825
N	jcn_only_AA	FAM160A2	chr11	-	chr11:6233098-6235640	chr11:6233207-6235640		chr11:6233098-6233206	chr11:6233097-6233098		0.00	8.33	0.00	0.00	9.09	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	3.03	8.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.261022	0.663989
N	intron_retention		chr1	-	chr1:1718493-1718764				chr1:1718492-1718493;chr1:1718764-1718765		27.50	46.67	29.79	4.00	15.00	3.57	23.08	17.78	23.53	10.87	13.64	5.88	25.00	15.79	32.61	15.38	12.31	9.76	20.00	25.00	12.90	15.79	18.42	15.15	15.38	19.05	26.19	15.79	12.50	3.12	29.73	34.21	40.00	18.92	24.14	22.81	24.04	22.02	-2.02	0.803782	1.000000
K	alternative_donor	WIPI2	chr7	+	chr7:5269337-5270465	chr7:5269370-5270465		chr7:5269337-5269369	chr7:5269336-5269337		34.00	28.00	43.55	34.62	38.57	34.09	42.68	34.00	36.76	45.24	47.67	37.04	37.65	44.68	36.49	45.24	47.12	44.44	38.03	40.00	35.62	44.44	42.37	36.36	41.38	38.78	39.13	41.67	50.91	47.62	40.35	30.85	30.49	38.10	40.38	30.77	37.84	39.39	1.55	0.460415	0.719459
K	intron_retention	STK11	chr19	+	chr19:1220505-1220579				chr19:1220504-1220505;chr19:1220579-1220580		15.38	8.70	8.33	12.50	11.11	0.00	0.00	0.00	7.50	10.00	3.45	0.00	3.92	4.00	4.65	3.12	6.12	0.00	8.33	16.67	7.41	5.26	9.68	NA	4.76	5.26	14.71	0.00	14.81	17.65	17.39	14.00	15.91	4.76	11.54	7.41	6.54	10.32	3.78	0.633229	1.000000
N	alternative_donor	RELT	chr11	+	chr11:73103514-73104881;chr11:73103483-73104881	chr11:73104700-73104881		chr11:73103483-73103513;chr11:73103514-73104699	chr11:73103482-73103483;chr11:73103513-73103514		20.63	30.00	21.18	NA	NA	NA	4.00	2.56	2.33	4.35	4.00	0.00	4.55	2.04	3.85	2.38	2.63	0.00	NA	11.76	16.67	7.14	10.00	NA	38.46	11.11	17.39	8.33	14.29	NA	10.00	15.15	NA	11.54	18.18	14.29	17.27	10.55	-6.72	0.365231	0.650093
K	jcn_only_AD	CACNA2D4	chr12	-	chr12:1909605-1910208;chr12:1909605-1909778	chr12:1909605-1910214		chr12:1909779-1910208;chr12:1910209-1910214	chr12:1910208-1910209;chr12:1910214-1910215		0.00	0.00	0.00	NA	0.00	NA	2.86	NA	NA	NA	0.00	NA	0.00	0.00	NA	0.00	5.56	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.23	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	PI4KB	chr1	-	chr1:151265510-151266493	chr1:151265510-151265875;chr1:151265939-151266493		chr1:151265876-151265938			0.00	0.00	0.00	0.00	0.00	0.00	2.22	2.63	0.00	5.00	0.00	0.00	5.13	0.00	2.74	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	0.00	2.00	0.00	0.00	0.00	0.00	2.38	0.00	2.70	0.00	4.65	1.11	0.00	-1.11	0.185140	0.709176
N	cassette	BRE	chr2	+	chr2:28464261-28521204	chr2:28464261-28467646;chr2:28467730-28521204		chr2:28467647-28467729			85.71	100.00	97.78	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	HSPA8	chr11	-	chr11:122931967-122932771	chr11:122932038-122932771		chr11:122931967-122932037	chr11:122931966-122931967		95.95	100.00	91.67	NA	97.14	NA	95.42	95.69	92.96	95.12	94.69	94.79	94.49	95.58	94.65	92.66	95.90	93.48	NA	94.79	87.50	94.14	93.60	93.12	NA	94.21	94.02	95.16	94.12	100.00	92.94	95.24	100.00	93.88	94.10	95.77	97.71	95.19	-2.53	0.172216	0.660713
K	alternative_last_exon	MFI2	chr3	-	chr3:196746669-196748274;chr3:196744162-196748274	chr3:196746673-196748274	chr3:196743974-196744161	chr3:196745824-196746672			NA	58.33	41.67	84.21	77.59	50.00	19.54	8.33	14.29	39.47	46.32	26.92	25.64	30.00	NA	53.23	67.95	43.48	82.35	NA	50.00	65.38	65.85	46.15	57.69	45.45	57.14	67.74	67.16	45.45	72.73	NA	84.62	77.78	70.00	41.18	58.01	37.73	-20.28	0.406623	0.567228
N	alternative_acceptor	TMEM14C	chr6	+	chr6:10723475-10724808;chr6:10723475-10724802	chr6:10723475-10724788		chr6:10724789-10724802;chr6:10724803-10724808	chr6:10724802-10724803;chr6:10724808-10724809		0.00	0.00	2.86	0.00	3.23	NA	3.30	6.67	2.86	1.96	2.82	4.88	2.70	4.35	5.00	4.23	2.82	0.00	7.69	5.00	0.00	3.12	1.64	2.86	NA	6.25	2.44	3.85	4.65	3.85	7.14	6.45	5.26	5.71	4.26	3.23	3.30	5.62	2.33	0.524649	0.808638
N	cassette	COMMD9	chr11	-	chr11:36296323-36298638	chr11:36296323-36297686;chr11:36297791-36298638		chr11:36297687-36297790			100.00	100.00	100.00	NA	95.56	NA	100.00	100.00	100.00	93.22	97.35	100.00	98.08	100.00	100.00	93.55	95.28	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor		chr12	-	chr12:6440093-6440603;chr12:6440093-6442238	chr12:6440093-6442234		chr12:6440604-6442234;chr12:6442235-6442238	chr12:6442234-6442235;chr12:6442238-6442239		97.76	96.92	97.33	100.00	100.00	NA	100.00	99.35	98.31	100.00	99.16	100.00	99.18	99.38	99.05	98.94	99.28	98.57	94.74	98.10	94.74	97.06	97.89	95.83	94.12	98.20	98.12	98.68	98.70	97.06	96.77	96.71	94.44	96.30	96.51	95.58	95.83	98.15	2.32	0.177169	0.563271
N	alternative_donor	IL10RB	chr21	+	chr21:34655547-34660408	chr21:34660149-34660408		chr21:34655547-34660148	chr21:34655546-34655547		1.33	4.65	1.60	2.38	1.11	20.00	0.81	1.81	1.12	2.08	0.90	2.86	1.53	1.85	1.59	1.82	2.00	2.70	12.50	1.15	1.77	1.16	1.18	2.86	7.69	1.26	0.99	1.39	0.95	2.86	1.63	1.29	13.64	3.20	1.92	2.60	6.17	1.48	-4.69	0.062931	0.430172
N	jcn_only_AD	GGA1	chr22	+	chr22:38013005-38014454;chr22:38013375-38014454	chr22:38013056-38014454		chr22:38013005-38013055;chr22:38013056-38013374	chr22:38013004-38013005;chr22:38013055-38013056		0.00	0.00	0.00	NA	0.00	NA	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	NA	NA	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.473134	0.721034
N	alternative_acceptor	GRN	chr17	+	chr17:42429940-42430028;chr17:42429940-42430087	chr17:42429940-42430083		chr17:42430029-42430083;chr17:42430084-42430087	chr17:42430083-42430084;chr17:42430087-42430088		0.00	10.11	0.00	8.39	8.19	9.49	0.00	7.92	0.00	9.69	11.59	9.97	0.00	0.00	8.28	6.12	11.53	0.00	8.56	7.55	7.81	7.08	7.73	7.16	11.18	0.00	8.24	6.55	7.87	7.13	6.74	7.92	8.83	8.55	6.28	7.50	8.70	3.37	-5.33	0.327270	0.709013
N	alternative_acceptor	INPPL1	chr11	+	chr11:71936211-71939233	chr11:71936211-71936493		chr11:71936494-71939233	chr11:71939233-71939234		10.00	21.74	14.71	NA	NA	NA	2.78	0.00	0.00	0.00	0.00	NA	2.27	3.03	4.17	NA	3.45	NA	NA	6.25	NA	NA	16.67	NA	25.00	8.33	20.00	NA	NA	NA	NA	11.11	NA	NA	17.65	16.67	12.26	6.25	-6.01	0.312926	0.709013
K	intron_retention	GNPTG	chr16	+	chr16:1412536-1412611				chr16:1412535-1412536;chr16:1412611-1412612		2.76	4.74	5.82	3.78	3.70	3.08	0.41	0.00	0.00	0.00	0.69	0.00	0.93	0.00	1.87	0.00	0.75	0.00	2.76	2.60	2.15	3.77	4.66	1.68	4.12	1.96	1.59	2.63	2.50	2.00	5.71	4.68	4.97	3.15	3.21	1.27	3.44	2.28	-1.16	0.795289	1.000000
N	jcn_only_AA	PAX8-AS1	chr2	+	chr2:234070473-234072399	chr2:234070473-234072352		chr2:234072353-234072399	chr2:234072399-234072400		100.00	100.00	85.71	NA	NA	NA	100.00	100.00	100.00	NA	92.11	NA	95.83	100.00	100.00	NA	95.16	NA	NA	100.00	NA	NA	100.00	NA	95.24	93.10	100.00	NA	100.00	NA	NA	NA	NA	NA	90.00	100.00	97.91	100.00	2.09	0.666026	0.851814
K	intron_retention	MOV10	chr1	+	chr1:113241412-113242306				chr1:113241411-113241412;chr1:113242306-113242307		10.53	0.00	16.98	NA	8.33	6.67	0.00	4.00	3.90	NA	0.00	18.52	3.45	7.26	9.43	0.00	6.25	21.74	0.00	8.54	5.66	10.00	6.25	24.64	0.00	14.55	10.42	27.27	9.52	16.00	12.37	10.83	0.00	20.83	5.00	20.00	0.00	9.54	9.54	0.007625	1.000000
N	alternative_donor	TALDO1	chr11	+	chr11:764064-764287;chr11:763920-764287;chr11:764013-764287;chr11:763941-764287	chr11:763945-764287		chr11:763920-763940;chr11:763941-763944;chr11:763945-764012;chr11:764013-764063	chr11:763919-763920;chr11:763940-763941;chr11:763944-763945;chr11:764012-764013		93.91	96.52	94.93	94.25	96.30	95.74	99.51	98.23	95.65	98.01	97.13	96.64	97.63	97.28	95.38	96.81	95.83	99.15	95.48	95.22	96.02	92.81	94.98	94.81	97.15	95.22	96.00	96.23	96.11	95.83	95.04	94.37	95.96	93.40	93.66	94.67	96.84	95.22	-1.62	0.194591	0.570816
N	jcn_only_AA	NAPA	chr19	-	chr19:47990051-47991491	chr19:47991148-47991491					100.00	100.00	NA	100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	96.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	PKN1	chr19	+	chr19:14581021-14581443				chr19:14581020-14581021;chr19:14581443-14581444		92.98	92.26	93.33	85.19	92.19	94.00	89.19	86.49	92.00	NA	92.31	NA	86.49	86.11	93.33	81.25	95.00	NA	96.69	92.16	93.02	86.67	89.19	100.00	90.22	88.00	92.31	88.24	90.32	95.45	94.74	93.59	92.59	91.30	80.65	86.67	91.24	90.08	-1.16	0.830984	1.000000
K	cassette	RPL10	chrX	+	chrX:153628283-153629042	chrX:153628283-153628804;chrX:153628968-153629042		chrX:153628805-153628967			87.67	93.38	92.92	95.85	93.81	94.77	99.40	96.52	98.54	99.07	97.80	99.15	99.16	96.08	94.62	97.80	96.89	98.77	90.54	87.98	93.33	95.92	94.25	96.52	92.61	93.15	94.94	97.19	96.45	98.40	83.90	85.08	84.69	94.90	94.28	96.65	93.00	90.56	-2.43	0.452055	0.753152
N	alternative_acceptor	DCTN5	chr16	+	chr16:23677050-23680763;chr16:23677050-23678367	chr16:23677050-23678337		chr16:23678338-23678367;chr16:23678368-23680763	chr16:23678367-23678368;chr16:23680763-23680764		2.38	2.86	1.47	4.55	2.38	8.33	1.85	0.00	0.00	4.44	5.08	4.17	1.33	5.88	0.00	2.63	3.75	0.00	NA	3.33	9.09	2.78	1.69	2.86	5.56	0.00	4.35	2.56	10.71	2.86	4.76	3.23	5.00	2.08	1.85	2.38	2.86	2.85	-0.00	0.658020	0.874938
K	coord_cassette	IFI44	chr1	+	chr1:79125169-79129449	chr1:79125169-79126238;chr1:79126340-79128388;chr1:79128564-79129449		chr1:79126239-79126339;chr1:79128389-79128563			97.84	100.00	100.00	94.29	100.00	97.94	90.00	97.37	96.88	96.43	100.00	98.45	93.33	92.62	96.15	93.62	96.88	96.95	97.14	96.88	98.86	97.30	100.00	98.48	100.00	98.24	100.00	98.60	100.00	98.36	91.53	93.71	89.29	95.83	100.00	97.30	95.23	97.12	1.89	0.739593	0.870412
N	intron_retention		chr2	+	chr2:114728331-114764595				chr2:114728330-114728331;chr2:114764595-114764596		16.67	9.30	8.82	5.00	5.41	5.06	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10.45	14.81	10.00	0.00	4.76	2.50	7.46	13.64	9.38	NA	5.26	18.18	5.88	11.67	10.53	14.29	3.12	10.00	9.88	14.23	4.35	0.506446	1.000000
N	cassette	C1orf162	chr1	+	chr1:112020051-112020604;chr1:112019701-112020604;chr1:112019490-112020604	chr1:112019701-112020272,chr1:112020051-112020272,chr1:112019490-112020272;chr1:112020398-112020604		chr1:112020273-112020397			63.29	55.13	56.76	61.90	58.99	64.71	76.67	66.67	NA	70.83	77.27	74.51	80.95	43.75	NA	76.92	80.52	79.59	56.67	46.67	63.89	59.09	60.32	68.18	88.46	57.89	55.06	92.86	73.47	72.00	50.00	46.77	51.82	59.26	58.18	55.38	66.67	53.95	-12.73	0.103941	0.685535
K	jcn_only_AD	DBNL	chr7	+	chr7:44092541-44096355	chr7:44092551-44096355		chr7:44092541-44092550	chr7:44092540-44092541		3.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	5.88	0.00	0.00	7.14	1.61	0.00	0.00	0.00	0.00	0.00	1.33	0.00	7.50	0.00	0.00	0.00	3.39	2.82	0.00	0.62	0.62	0.534551	0.757311
K	alternative_acceptor	TMEM138	chr11	+	chr11:61133689-61135394	chr11:61133689-61134899		chr11:61134900-61135394	chr11:61135394-61135395		10.53	9.38	11.58	3.77	3.37	0.00	0.91	1.27	0.00	1.85	1.09	5.88	2.27	0.81	1.67	1.28	1.02	0.00	4.76	10.91	6.52	7.95	7.63	6.82	0.00	8.24	7.84	3.92	6.52	4.76	9.60	13.79	17.39	8.97	7.26	10.96	3.51	8.92	5.41	0.744210	0.903518
N	jcn_only_AD	MINK1	chr17	+	chr17:4800109-4800498	chr17:4800368-4800498		chr17:4800109-4800367	chr17:4800108-4800109		0.00	0.00	0.00	NA	0.00	NA	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	COPS6,CREB5	chr7	+	chr7:99686690-99686915	chr7:99686690-99686912		chr7:99686913-99686915	chr7:99686915-99686916		100.00	100.00	100.00	NA	90.91	NA	96.30	NA	95.00	100.00	92.59	100.00	100.00	NA	88.89	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	NA	81.82	100.00	91.67	100.00	100.00	100.00	100.00	NA	100.00	100.00	86.67	100.00	100.00	0.00	0.488027	0.787633
N	jcn_only_AA	SBF1	chr22	-	chr22:50893136-50893242;chr22:50893155-50893242	chr22:50893172-50893242		chr22:50893136-50893154;chr22:50893155-50893171	chr22:50893135-50893136;chr22:50893154-50893155		93.94	100.00	92.00	100.00	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	92.31	NA	100.00	100.00	95.83	96.30	100.00	86.67	92.45	NA	100.00	100.00	95.24	100.00	100.00	0.00	0.210250	0.663989
N	cassette	HK3	chr5	-	chr5:176309129-176311039	chr5:176309129-176310770;chr5:176310871-176311039		chr5:176310771-176310870			96.64	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.16	100.00	99.35	91.67	100.00	100.00	100.00	96.26	98.55	100.00	96.90	97.62	94.64	100.00	100.00	97.96	97.83	97.85	100.00	98.32	-1.68	0.338126	0.709176
N	alternative_last_exon	C11orf57	chr11	+	chr11:64034025-64035975	chr11:64034025-64034656	chr11:64035976-64036622	chr11:64034657-64034743			97.06	98.48	97.96	100.00	95.35	100.00	100.00	93.75	100.00	93.75	97.14	NA	97.14	95.45	100.00	100.00	97.44	NA	98.28	97.37	98.08	95.83	91.67	NA	97.50	95.24	94.12	91.30	95.24	100.00	95.24	95.92	94.55	96.55	97.44	100.00	97.89	95.34	-2.55	0.060074	0.256109
K	intron_retention		chr10	+	chr10:104159476-104159836				chr10:104159475-104159476;chr10:104159836-104159837		14.57	12.20	13.33	10.24	9.89	7.58	0.00	0.47	1.39	1.58	4.39	0.61	0.00	2.14	2.72	1.25	0.74	1.54	17.24	10.00	8.70	12.50	12.28	11.90	8.33	7.11	10.79	7.08	12.00	6.16	12.06	14.24	19.51	14.29	12.43	10.56	10.27	8.55	-1.71	0.949877	1.000000
N	alternative_last_exon	RP11-806H10.4	chr17	+	chr17:74261707-74266274	chr17:74261707-74261987	chr17:74266275-74267380	chr17:74261988-74262050			98.82	93.48	98.10	96.00	98.31	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	98.48	100.00	100.00	100.00	60.00	98.73	98.99	100.00	98.57	98.15	100.00	100.00	97.14	100.00	100.00	100.00	96.91	100.00	3.09	0.242599	0.458097
N	alternative_donor	RAE1	chr20	+	chr20:55949858-55953068;chr20:55950127-55953068	chr20:55951323-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		4.55	0.00	5.88	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.00	2.94	2.70	0.00	0.00	4.76	0.00	3.57	1.92	3.45	0.00	0.00	2.94	0.00	0.00	0.00	3.12	2.08	0.00	1.96	5.56	5.71	0.00	3.12	3.12	0.077667	0.470719
K	intron_retention		chr17	-	chr17:18178295-18180988				chr17:18178294-18178295;chr17:18180988-18180989		15.79	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	4.17	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	5.00	0.00	0.00	0.00	0.00	4.76	0.00	2.08	2.08	0.953563	1.000000
K	alternative_acceptor	FAM89B	chr11	+	chr11:65340432-65340872;chr11:65340432-65340823	chr11:65340432-65340833		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		70.83	80.00	64.86	NA	66.67	NA	62.16	68.42	65.22	47.37	66.67	NA	59.38	57.14	61.54	68.42	67.74	NA	54.55	56.52	67.57	NA	50.00	NA	NA	57.89	62.86	63.64	47.37	80.00	75.00	53.33	64.71	53.85	72.00	66.67	62.16	63.16	1.00	0.980048	0.994621
K	intron_retention	RAD23A	chr19	+	chr19:13063668-13063749				chr19:13063667-13063668;chr19:13063749-13063750		4.48	4.60	5.36	1.85	2.98	3.30	0.00	0.00	0.00	0.89	0.00	0.00	0.00	0.00	1.31	0.56	0.77	0.00	2.17	2.88	2.86	3.28	3.17	2.40	0.00	1.89	2.31	1.36	1.49	1.53	6.17	6.43	5.26	2.75	3.70	3.36	1.08	2.38	1.30	0.964458	1.000000
K	intron_retention	MEI1	chr22	+	chr22:42191547-42191738				chr22:42191546-42191547;chr22:42191738-42191739		2.50	0.00	4.17	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	NA	NA	6.90	0.00	0.00	NA	0.00	NA	0.00	2.56	3.95	0.00	0.00	NA	0.00	2.50	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.488402	1.000000
K	intron_retention		chr19	+	chr19:14071204-14071276				chr19:14071203-14071204;chr19:14071276-14071277		21.21	17.54	22.22	NA	20.00	0.00	8.70	7.69	3.23	NA	0.00	NA	13.64	6.45	10.34	5.26	11.76	NA	24.14	19.44	20.00	NA	30.95	NA	52.63	16.67	13.89	14.29	19.35	NA	29.73	27.50	40.00	13.04	16.00	15.79	20.84	18.05	-2.79	0.458467	1.000000
N	alternative_acceptor		chr15	+	chr15:86283504-86284244;chr15:86283504-86291982	chr15:86283504-86284276		chr15:86284245-86284276;chr15:86284277-86291982	chr15:86284276-86284277;chr15:86291982-86291983		98.04	95.45	97.62	92.31	85.71	82.35	100.00	100.00	100.00	97.37	97.83	94.74	100.00	100.00	100.00	100.00	98.00	100.00	81.82	97.44	94.74	96.55	97.06	97.30	NA	100.00	96.92	95.00	96.30	95.00	95.83	98.21	91.67	98.15	97.22	98.00	95.45	99.02	3.57	0.233745	0.685872
N	jcn_only_AD	SELO	chr22	+	chr22:50649341-50654145	chr22:50651114-50654145		chr22:50649341-50651113	chr22:50649340-50649341		0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	2.86	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	7.69	0.00	0.00	0.00	2.78	3.70	6.45	7.14	0.00	0.00	0.00	0.00	8.11	8.16	0.00	0.00	0.00	0.363217	0.657607
N	cassette	ST3GAL6	chr3	+	chr3:98503885-98512518;chr3:98507308-98512518;chr3:98492828-98512518	chr3:98507308-98510684,chr3:98492828-98510684,chr3:98503885-98510684;chr3:98510838-98512518		chr3:98510685-98510837			100.00	92.86	100.00	97.87	97.94	100.00	100.00	100.00	NA	95.56	95.45	NA	98.11	100.00	NA	100.00	95.45	NA	100.00	96.55	100.00	96.72	100.00	100.00	100.00	93.33	100.00	93.55	98.41	NA	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	0.00	0.913774	0.976536
K	intron_retention	TCEAL4	chrX	+	chrX:102841790-102841876				chrX:102841789-102841790;chrX:102841876-102841877		90.00	100.00	100.00	90.91	100.00	NA	84.38	92.31	88.46	79.49	89.29	88.00	89.66	88.24	89.19	88.89	92.94	91.43	94.74	100.00	100.00	100.00	92.86	100.00	NA	68.75	68.42	96.15	88.00	100.00	100.00	94.12	100.00	100.00	100.00	88.46	94.74	91.16	-3.58	0.836497	1.000000
K	intron_retention	ACAP1	chr17	+	chr17:7253374-7253445				chr17:7253373-7253374;chr17:7253445-7253446		14.81	9.76	NA	NA	23.81	16.67	NA	0.00	10.00	NA	NA	NA	NA	4.17	10.00	NA	NA	NA	8.11	0.00	4.65	NA	23.08	NA	18.31	2.86	6.67	NA	25.00	NA	10.00	9.52	4.35	NA	NA	NA	8.93	3.51	-5.42	0.764000	1.000000
K	alternative_donor	ARRDC1	chr9	+	chr9:140509351-140509525	chr9:140509453-140509525		chr9:140509351-140509452	chr9:140509350-140509351		100.00	100.00	100.00	100.00	100.00	96.43	100.00	91.30	100.00	NA	100.00	100.00	100.00	88.89	100.00	100.00	100.00	NA	98.55	100.00	100.00	NA	100.00	NA	95.79	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.26	100.00	100.00	92.31	99.28	100.00	0.72	0.425904	0.687787
N	cassette	PREB	chr2	-	chr2:27355792-27356399;chr2:27355792-27357154	chr2:27355792-27355984;chr2:27356206-27357154,chr2:27356206-27356399		chr2:27355985-27356205			100.00	100.00	95.45	NA	92.59	NA	100.00	100.00	100.00	97.73	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.83	91.11	96.30	NA	100.00	100.00	100.00	95.24	100.00	85.00	86.84	100.00	100.00	93.33	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	GLRX	chr5	-	chr5:95150512-95152210;chr5:95150662-95152210	chr5:95150094-95152210		chr5:95150094-95150511;chr5:95150512-95150661	chr5:95150093-95150094;chr5:95150511-95150512		97.25	100.00	96.04	100.00	100.00	100.00	98.62	94.53	96.88	95.42	95.74	96.10	100.00	96.01	96.05	98.85	100.00	94.55	99.29	96.03	98.90	96.77	100.00	94.90	100.00	95.83	96.72	98.53	99.59	97.84	92.92	95.65	98.60	100.00	98.29	97.55	99.65	95.92	-3.73	0.000590	0.146058
N	alternative_acceptor	CYTH2	chr19	+	chr19:48978207-48980973;chr19:48978207-48981325	chr19:48978207-48981322		chr19:48980974-48981322;chr19:48981323-48981325	chr19:48981322-48981323;chr19:48981325-48981326		34.43	36.36	33.33	34.48	37.84	47.83	24.24	30.30	35.14	28.95	39.39	27.03	30.77	32.73	37.50	30.91	26.83	30.36	31.25	31.37	40.91	24.14	36.17	24.00	41.18	33.33	31.25	35.29	34.21	33.33	41.67	37.50	34.29	29.03	28.57	32.69	32.77	33.03	0.26	0.746142	0.904166
K	alternative_last_exon	AF011889.5,IDS	chrX	-	chrX:148568630-148571844	chrX:148568845-148571844	chrX:148568456-148568629	chrX:148568662-148568844			38.64	88.35	28.83	86.36	75.49	97.67	6.06	7.02	6.32	5.71	5.45	6.25	9.33	4.92	8.75	13.73	5.94	3.57	94.00	30.23	74.07	41.67	47.22	33.33	90.14	12.50	23.53	40.00	42.59	54.17	44.74	37.04	91.38	46.34	36.21	34.88	89.25	21.37	-67.88	0.073884	0.281549
N	jcn_only_AA	CDC34	chr19	+	chr19:537148-541338;chr19:537148-538677;chr19:537148-541342	chr19:537148-541345		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	1.75	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	10.00	0.00	0.00	3.17	0.00	2.86	2.08	4.62	0.00	0.00	1.69	0.00	1.43	1.43	0.311240	0.663989
N	alternative_acceptor	ZMIZ2	chr7	+	chr7:44802586-44802859;chr7:44802586-44802854	chr7:44802586-44802969		chr7:44802855-44802859;chr7:44802860-44802969	chr7:44802859-44802860;chr7:44802969-44802970		0.00	0.00	2.78	NA	NA	NA	0.00	0.00	3.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	NA	0.00	0.00	0.00	4.65	0.00	0.00	0.00	NA	0.00	3.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.186388	0.660713
K	cassette	DUSP11	chr2	-	chr2:73989987-73993954	chr2:73989987-73993544;chr2:73993722-73993954		chr2:73993545-73993721			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.56	100.00	100.00	96.55	95.83	100.00	100.00	94.00	98.33	92.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.44	95.00	100.00	96.49	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_last_exon		chr5	+	chr5:139003047-139011505;chr5:139003047-139059948	chr5:139003047-139006340	chr5:139059949-139061032	chr5:139006341-139008018			96.83	97.30	98.41	94.83	97.78	100.00	98.39	97.78	97.87	97.53	98.78	97.62	98.39	97.78	97.78	98.97	98.77	97.67	98.21	97.78	98.31	98.51	98.97	98.25	98.11	97.96	98.39	98.11	98.82	98.33	97.37	92.45	98.33	98.89	98.70	98.84	98.27	97.78	-0.49	0.049472	0.234050
K	jcn_only_AD	GTF3C1,MAPK3	chr16	-	chr16:27474914-27475715	chr16:27474914-27475640		chr16:27475641-27475715	chr16:27475715-27475716		54.55	62.50	59.09	NA	57.14	NA	70.00	NA	78.26	69.23	63.64	54.55	60.00	NA	80.00	64.71	56.25	NA	69.23	54.55	80.77	NA	58.33	NA	45.00	81.82	67.65	NA	76.47	75.00	76.19	67.86	68.18	66.67	68.18	68.00	65.34	65.37	0.03	0.621038	0.813793
K	intron_retention	FLNA	chrX	-	chrX:153579410-153579948				chrX:153579409-153579410;chrX:153579948-153579949		16.81	7.88	23.33	10.95	14.37	4.00	1.11	3.81	2.63	1.61	2.12	0.74	2.27	3.95	7.49	1.79	2.97	1.29	2.94	14.94	6.25	19.79	21.68	13.24	7.07	20.74	15.53	6.53	9.96	4.44	14.18	16.43	2.68	12.52	16.84	7.63	2.81	14.56	11.75	0.065759	1.000000
K	intron_retention	GLMP	chr1	-	chr1:156263001-156263110				chr1:156263000-156263001;chr1:156263110-156263111		6.21	6.22	11.25	3.12	3.09	0.00	1.08	0.97	3.61	1.59	0.52	0.79	1.46	0.00	2.56	0.68	1.12	0.00	4.07	3.90	2.83	5.00	3.90	2.44	6.31	5.26	3.00	0.97	2.71	0.00	7.96	10.17	4.92	4.31	4.40	1.16	4.50	4.58	0.08	0.944801	1.000000
N	cassette	NDFIP1	chr5	+	chr5:141511908-141520127	chr5:141511908-141515294;chr5:141515383-141520127		chr5:141515295-141515382			100.00	100.00	100.00	100.00	95.65	100.00	99.07	100.00	98.95	100.00	100.00	100.00	100.00	97.56	100.00	97.22	100.00	100.00	100.00	100.00	100.00	96.97	100.00	95.35	100.00	98.39	96.55	100.00	100.00	100.00	95.74	94.64	100.00	95.08	96.61	100.00	100.00	99.19	-0.81	0.146873	0.709176
K	intron_retention	ARHGAP27	chr17	-	chr17:43473651-43473852				chr17:43473650-43473651;chr17:43473852-43473853		3.57	13.33	11.90	NA	10.00	NA	0.00	1.25	0.00	NA	0.00	0.00	6.12	2.38	4.55	6.67	0.00	0.00	NA	10.29	NA	NA	12.12	8.33	0.00	9.30	9.09	6.67	16.67	0.00	6.90	13.89	NA	16.67	14.29	3.57	3.06	5.24	2.18	0.969133	1.000000
N	coord_cassette	HSD17B14	chr19	-	chr19:49318399-49337532	chr19:49318399-49334924;chr19:49335017-49335922;chr19:49335990-49337532		chr19:49334925-49335016;chr19:49335923-49335989			93.75	87.93	84.62	92.31	94.67	100.00	97.14	90.00	93.75	96.97	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	92.31	91.30	95.24	93.18	96.67	92.31	92.06	100.00	84.62	97.56	94.12	96.30	91.11	100.00	91.38	95.65	94.92	93.75	92.19	92.53	0.34	0.735846	0.870412
N	jcn_only_AA	COX7A2L	chr2	-	chr2:42578500-42580351;chr2:42562886-42580351	chr2:42578496-42580351		chr2:42562886-42578495;chr2:42578496-42578499	chr2:42562885-42562886;chr2:42578495-42578496		0.00	3.64	2.63	5.00	0.00	0.00	2.78	0.00	0.00	0.90	0.00	3.66	1.90	6.06	1.67	0.00	0.00	0.00	0.00	4.55	0.00	0.00	1.16	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	2.53	3.23	2.63	0.00	0.00	2.34	0.00	-2.34	0.907733	0.968555
N	jcn_only_AA	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24680816-24680885;chr14:24680713-24680885;chr14:24680799-24680885;chr14:24680788-24680885	chr14:24680719-24680885		chr14:24680713-24680718;chr14:24680719-24680787;chr14:24680788-24680798;chr14:24680799-24680815	chr14:24680712-24680713;chr14:24680718-24680719;chr14:24680787-24680788;chr14:24680798-24680799		5.62	7.44	2.80	1.89	1.47	3.03	0.88	3.66	1.79	0.99	0.59	3.23	2.70	2.02	3.57	1.14	1.30	1.03	8.46	5.38	10.27	5.66	4.35	3.70	0.00	5.33	4.40	1.43	4.61	1.80	7.14	4.39	7.34	2.47	7.84	4.30	5.02	5.36	0.34	0.823735	0.929528
N	alternative_acceptor	SLC11A2	chr12	-	chr12:51380970-51382164;chr12:51375587-51382164	chr12:51380704-51382164		chr12:51375587-51380703;chr12:51380704-51380969	chr12:51375586-51375587;chr12:51380703-51380704		16.98	17.24	13.24	26.83	21.88	33.33	14.29	9.52	4.84	18.18	20.00	16.67	8.57	1.98	7.84	3.57	17.14	16.00	29.41	11.67	17.65	23.68	38.71	21.05	23.53	3.95	13.04	10.53	7.69	23.60	16.36	14.58	30.00	8.70	20.00	18.28	20.38	10.59	-9.79	0.039176	0.560254
N	jcn_only_AA	STK11	chr19	+	chr19:1223172-1226452;chr19:1223172-1223636	chr19:1223172-1226457		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		3.23	6.03	7.69	10.00	2.74	0.00	7.14	0.00	0.00	0.00	1.89	0.00	0.00	0.00	2.22	4.76	4.55	0.00	11.39	7.14	6.17	0.00	0.00	0.00	4.44	0.00	3.39	0.00	0.00	9.52	0.00	6.78	8.08	0.00	10.26	0.00	6.58	0.00	-6.58	0.048987	0.663989
N	alternative_donor	MARCO	chr2	+	chr2:119739987-119748164	chr2:119740287-119748164		chr2:119739987-119740286	chr2:119739986-119739987		0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.33	0.00	0.16	0.51	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.179070	0.563271
K	alternative_acceptor	CAST	chr5	+	chr5:96098077-96100927	chr5:96098077-96100924		chr5:96100925-96100927	chr5:96100927-96100928		54.21	70.00	60.56	66.67	53.66	61.54	66.98	66.92	66.29	69.31	67.02	70.69	65.85	68.75	68.69	66.67	64.29	75.82	53.85	58.75	68.29	60.00	61.36	63.64	55.00	63.64	67.19	64.44	70.00	64.44	61.19	61.22	64.29	63.27	61.54	62.00	65.07	62.41	-2.65	0.907102	0.969595
N	jcn_only_AA	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660742;chr9:35660645-35660767	chr9:35660645-35660770		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		12.50	17.86	10.00	8.33	5.22	0.00	3.77	4.76	0.00	4.17	6.45	0.00	1.52	4.76	2.50	5.88	3.33	0.00	11.54	12.77	14.29	20.69	3.85	5.26	15.28	18.92	7.02	4.00	9.23	3.45	18.33	10.42	13.89	5.56	6.00	8.11	12.71	12.63	-0.08	0.719685	0.875250
N	alternative_acceptor	TRIM28	chr19	+	chr19:59060144-59060228;chr19:59060144-59060206;chr19:59060144-59060231	chr19:59060144-59060252		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		0.00	0.00	8.89	0.00	17.86	NA	4.76	0.00	10.53	7.69	10.00	2.44	5.56	12.50	4.44	8.00	0.00	8.47	0.00	11.11	4.35	5.56	8.11	10.00	0.00	13.33	9.09	0.00	9.38	12.50	8.70	6.12	19.23	0.00	10.34	0.00	2.38	9.90	7.52	0.511272	0.800006
N	jcn_only_AD	ABCC10	chr6	+	chr6:43416943-43417159	chr6:43416948-43417159		chr6:43416943-43416947	chr6:43416942-43416943		22.22	13.89	9.30	NA	10.34	NA	0.00	0.00	9.09	NA	0.00	NA	0.00	0.00	7.14	NA	NA	NA	15.79	10.53	13.16	0.00	10.26	NA	33.33	11.11	17.65	14.29	0.00	7.69	11.76	15.15	12.12	13.33	9.09	11.11	13.00	10.82	-2.18	0.606181	0.805858
N	jcn_only_AD		chr1	-	chr1:52827289-52828300	chr1:52827289-52828273		chr1:52828274-52828300	chr1:52828300-52828301		100.00	100.00	100.00	NA	NA	NA	100.00	96.00	100.00	90.48	100.00	91.30	93.94	95.83	100.00	90.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	93.02	NA	100.00	100.00	98.08	100.00	98.08	-1.92	0.792396	0.902717
N	alternative_donor	MS4A6A	chr11	-	chr11:59949215-59950538;chr11:59949215-59950608;chr11:59949215-59949969;chr11:59949215-59949844;chr11:59949215-59949790	chr11:59949215-59950450		chr11:59949791-59949844;chr11:59949845-59949969;chr11:59949970-59950450;chr11:59950451-59950538;chr11:59950539-59950608	chr11:59949844-59949845;chr11:59949969-59949970;chr11:59950450-59950451;chr11:59950538-59950539;chr11:59950608-59950609		100.00	100.00	100.00	100.00	96.55	NA	93.14	88.60	NA	95.77	92.47	94.90	95.42	97.06	NA	96.92	94.78	94.19	100.00	100.00	NA	95.45	94.05	95.65	NA	91.43	NA	97.37	96.74	90.28	NA	NA	100.00	98.11	96.00	93.33	100.00	97.06	-2.94	0.429473	0.689829
K	intron_retention	XRCC1	chr19	-	chr19:44050880-44051035				chr19:44050879-44050880;chr19:44051035-44051036		4.76	6.90	14.29	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	11.11	NA	13.33	0.00	5.56	0.00	0.00	NA	NA	0.00	NA	9.09	3.57	NA	0.00	0.00	0.00	0.841615	1.000000
N	cassette	MS4A7	chr11	+	chr11:60152696-60156862;chr11:60150762-60156862;chr11:60150762-60161259	chr11:60150762-60154189,chr11:60152696-60154189;chr11:60154247-60161259,chr11:60154247-60156862		chr11:60154190-60154246			96.60	100.00	93.75	89.47	97.33	100.00	97.30	97.86	95.08	100.00	97.62	98.08	98.51	98.53	100.00	98.82	98.90	100.00	93.33	97.81	100.00	100.00	98.09	100.00	100.00	96.07	98.04	95.12	95.90	100.00	94.89	92.75	100.00	93.20	94.77	95.40	99.25	97.20	-2.05	0.339090	0.709176
K	intron_retention	ABCF3	chr3	+	chr3:183907720-183908786				chr3:183907719-183907720;chr3:183908786-183908787		0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	4.00	0.00	2.86	0.00	0.00	3.57	0.00	5.00	2.63	8.33	0.00	0.00	4.88	0.00	0.00	0.00	3.23	4.62	0.00	3.23	2.04	4.44	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention		chr7	+	chr7:66416123-66418212				chr7:66416122-66416123;chr7:66418212-66418213		1.72	0.00	4.35	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	1.06	0.00	0.00	0.00	0.00	1.45	0.00	0.00	1.47	2.44	NA	1.41	0.00	0.00	0.00	0.00	0.00	2.35	0.00	2.99	3.08	6.06	0.00	0.70	0.70	0.992730	1.000000
N	alternative_acceptor	RP11-343C2.11,STX4,VPS4A	chr16	+	chr16:69355174-69356462;chr16:69355174-69356446	chr16:69355174-69356433		chr16:69356434-69356446;chr16:69356447-69356462	chr16:69356446-69356447;chr16:69356462-69356463		4.94	12.50	4.11	0.00	6.33	0.00	1.12	0.00	2.30	0.00	1.89	0.00	2.22	1.33	1.32	1.48	0.93	0.00	13.33	2.74	6.58	1.35	2.80	1.59	18.92	0.00	6.02	3.28	4.88	0.00	3.57	3.57	13.79	0.00	2.73	0.83	12.91	2.04	-10.88	0.035025	0.560254
K	intron_retention	SIPA1	chr11	+	chr11:65414135-65414440				chr11:65414134-65414135;chr11:65414440-65414441		100.00	100.00	97.06	NA	100.00	NA	94.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.62	96.67	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.44	92.59	100.00	100.00	100.00	95.45	100.00	100.00	0.00	0.902142	1.000000
K	intron_retention		chr6	+	chr6:33258022-33258102				chr6:33258021-33258022;chr6:33258102-33258103		10.53	0.00	5.00	0.00	2.99	3.57	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	1.39	4.35	0.00	9.52	8.77	16.67	0.00	0.00	0.00	2.27	1.45	2.38	6.67	9.09	2.17	6.06	2.38	2.86	0.00	2.17	2.17	0.480606	1.000000
K	intron_retention	GTPBP1	chr22	+	chr22:39131316-39132033				chr22:39131315-39131316;chr22:39132033-39132034		100.00	100.00	100.00	100.00	100.00	NA	100.00	98.25	100.00	100.00	100.00	95.45	100.00	97.06	98.04	100.00	100.00	94.74	100.00	96.67	100.00	100.00	100.00	96.30	100.00	97.30	100.00	100.00	100.00	95.83	94.44	100.00	97.50	100.00	97.14	96.00	100.00	97.18	-2.82	0.181158	1.000000
N	jcn_only_AD	CCNY	chr10	+	chr10:35855114-35857981	chr10:35857047-35857981		chr10:35855114-35857046	chr10:35855113-35855114		0.00	0.00	0.00	0.00	0.00	NA	1.12	0.00	3.12	0.00	1.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	3.92	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	PAF1	chr19	-	chr19:39877044-39877121				chr19:39877043-39877044;chr19:39877121-39877122		6.94	8.51	4.48	1.82	5.88	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.80	6.15	8.26	0.00	3.39	4.76	2.30	6.25	3.51	0.00	0.00	2.30	17.35	12.12	8.43	5.26	2.50	1.72	3.05	6.20	3.15	0.920361	1.000000
K	cassette	MTMR14	chr3	+	chr3:9704060-9711115	chr3:9704060-9710402;chr3:9710479-9711115		chr3:9710403-9710478			92.86	100.00	94.29	NA	100.00	NA	100.00	100.00	100.00	98.44	100.00	100.00	100.00	97.96	95.83	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.59	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	98.98	-1.02	0.117294	0.709176
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648791-75648946;chr15:75648815-75648946	chr15:75648780-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		0.00	0.00	5.26	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	3.92	1.19	0.00	3.92	1.54	0.00	0.00	0.00	0.663525	0.851085
N	cassette	RHOA	chr3	-	chr3:49397816-49412866;chr3:49400060-49412866	chr3:49400060-49405860,chr3:49397816-49405860;chr3:49405982-49412866		chr3:49405861-49405981			98.79	100.00	97.92	100.00	98.04	100.00	99.38	98.97	98.03	99.26	99.57	100.00	99.53	99.24	98.83	99.18	99.09	99.78	94.92	99.19	98.60	98.49	99.43	99.47	100.00	98.93	98.00	98.83	99.41	99.64	97.35	98.74	100.00	98.96	98.63	99.00	99.77	98.95	-0.81	0.802170	0.936947
N	cassette		chr20	.	chr20:44751396-44756617;chr20:44751859-44756776;chr20:44751396-44756776	chr20:44751859-44755278,chr20:44751396-44755278;chr20:44755341-44756617,chr20:44755341-44756776		chr20:44755279-44755340			89.44	100.00	91.56	95.60	100.00	96.36	97.06	97.01	96.62	96.44	100.00	97.00	100.00	98.62	97.52	98.20	100.00	97.36	100.00	89.71	91.74	97.12	93.33	96.03	NA	94.40	94.87	97.79	100.00	97.00	88.66	81.48	89.47	94.29	100.00	92.92	100.00	92.06	-7.94	0.143848	0.709176
N	jcn_only_AA	DDX18	chr2	+	chr2:71658559-71660357	chr2:71658559-71660294		chr2:71660295-71660357	chr2:71660357-71660358		100.00	95.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	100.00	100.00	100.00	100.00	94.52	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	100.00	100.00	99.46	100.00	0.54	0.188225	0.663989
K	intron_retention	INPPL1	chr11	+	chr11:71941943-71942036				chr11:71941942-71941943;chr11:71942036-71942037		2.86	0.00	3.90	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.92	0.00	0.00	NA	NA	2.94	NA	NA	8.57	0.00	0.00	1.96	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.98	0.98	0.474459	1.000000
K	intron_retention	SAP30BP	chr17	+	chr17:73700895-73702087				chr17:73700894-73700895;chr17:73702087-73702088		9.52	7.89	4.55	10.39	3.06	5.65	3.45	0.00	0.00	5.56	2.08	4.76	8.57	2.47	5.00	5.88	3.28	4.69	5.56	4.76	4.11	11.67	3.12	13.75	13.11	6.80	6.25	11.48	5.88	13.40	3.30	7.48	3.57	12.24	8.33	12.93	6.72	4.03	-2.70	0.083260	1.000000
K	cassette	VDAC2	chr10	+	chr10:76973829-76978820	chr10:76973829-76977645;chr10:76977750-76978820		chr10:76977646-76977749			1.18	0.00	3.94	0.00	2.08	NA	1.91	1.45	2.36	0.56	1.38	0.76	2.22	1.47	1.80	1.78	1.41	0.98	0.00	1.16	0.00	2.65	2.42	5.36	NA	1.64	2.90	2.41	2.13	1.25	3.03	3.88	0.00	4.00	2.98	3.91	0.00	1.46	1.46	0.201634	0.709176
K	coord_cassette	ITGB7	chr12	-	chr12:53586323-53587491	chr12:53586323-53586474;chr12:53586695-53586923;chr12:53587148-53587491		chr12:53586475-53586694;chr12:53586924-53587147			98.28	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	93.75	98.68	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.641410	0.803635
K	alternative_acceptor	LINC00493	chr20	+	chr20:18548241-18549882	chr20:18548241-18549879		chr20:18549880-18549882	chr20:18549882-18549883		17.78	21.18	22.73	13.89	16.90	16.67	17.65	15.52	19.18	16.67	17.33	17.65	13.04	18.37	14.81	14.52	17.74	23.33	12.96	26.19	18.02	20.00	22.64	16.67	25.00	21.31	18.33	17.14	21.25	12.90	20.37	14.94	20.00	19.35	15.22	17.14	18.82	19.37	0.55	0.525175	0.808638
K	intron_retention		chr21	+	chr21:45560225-45563086				chr21:45560224-45560225;chr21:45563086-45563087		0.00	0.00	6.67	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	2.44	0.00	0.00	0.00	3.23	NA	0.00	0.00	3.28	NA	8.82	0.00	0.00	0.00	0.00	0.00	8.33	7.69	0.00	4.76	1.56	4.00	0.57	0.00	-0.57	0.697483	1.000000
K	cassette	MS4A6A	chr11	-	chr11:59943085-59949053	chr11:59943085-59945732;chr11:59945790-59949053		chr11:59945733-59945789			95.74	97.46	100.00	100.00	98.70	100.00	97.77	97.75	NA	98.85	96.64	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.00	91.30	NA	94.55	97.75	91.43	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.91	96.30	100.00	97.87	100.00	97.61	97.75	0.14	0.607683	0.853757
K	intron_retention	MYO1F	chr19	-	chr19:8615241-8615445				chr19:8615240-8615241;chr19:8615445-8615446		0.96	1.85	2.97	NA	2.22	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	0.00	4.35	2.38	3.51	0.00	2.27	0.00	12.07	1.74	2.40	0.00	1.01	0.00	0.00	2.63	7.32	0.00	2.31	1.41	3.10	0.48	-2.62	0.575295	1.000000
K	intron_retention	MBTPS1	chr16	-	chr16:84094419-84096909				chr16:84094418-84094419;chr16:84096909-84096910		3.12	15.38	10.00	NA	7.69	NA	0.00	0.00	0.00	0.00	5.26	0.00	4.08	6.25	5.56	3.23	8.82	0.00	NA	3.57	0.00	5.56	5.00	14.29	NA	10.26	5.45	0.00	2.94	0.00	8.00	6.12	9.09	18.18	10.34	12.12	6.58	4.91	-1.67	0.394014	1.000000
N	jcn_only_AD		chr19	-	chr19:48893782-48897311	chr19:48893782-48894524		chr19:48894525-48897311	chr19:48897311-48897312		100.00	90.70	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	CDC123	chr10	+	chr10:12277123-12279142	chr10:12277330-12279142		chr10:12277123-12277329	chr10:12277122-12277123		0.00	0.00	0.00	0.00	5.88	NA	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.85	3.08	0.00	4.00	5.88	0.00	0.00	0.00	4.26	0.00	0.00	0.00	0.363217	0.657607
N	intron_retention		chr3	+	chr3:48481869-48481954				chr3:48481868-48481869;chr3:48481954-48481955		5.56	2.17	18.18	0.00	6.25	0.00	4.17	9.09	0.00	5.00	6.45	0.00	0.00	NA	0.00	4.17	0.00	0.00	4.65	14.29	2.56	7.14	16.67	NA	6.67	NA	13.33	15.38	8.70	7.14	18.75	14.29	13.64	0.00	0.00	0.00	4.41	11.69	7.28	0.414498	1.000000
K	intron_retention	QRICH1	chr3	-	chr3:49069707-49070054				chr3:49069706-49069707;chr3:49070054-49070055		5.56	0.00	9.84	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	2.70	12.50	6.06	7.02	9.38	0.00	2.13	7.84	0.00	5.56	3.23	3.23	7.81	12.50	4.08	3.64	5.00	0.00	2.42	2.42	0.991540	1.000000
K	jcn_only_AD	TAPBPL	chr12	+	chr12:6561786-6562232;chr12:6561479-6562232;chr12:6561317-6562232	chr12:6560951-6562232		chr12:6560951-6561316;chr12:6561317-6561478;chr12:6561479-6561785	chr12:6560950-6560951;chr12:6561316-6561317;chr12:6561478-6561479		0.00	0.00	0.00	NA	0.00	NA	3.70	0.00	0.00	0.00	0.00	0.00	5.71	4.76	2.17	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	NA	0.00	0.00	0.00	1.85	0.00	-1.85	0.659540	0.824391
K	jcn_only_AD	USP9X	chrX	+	chrX:41089033-41089753	chrX:41089081-41089753		chrX:41089033-41089080	chrX:41089032-41089033		5.62	0.00	2.00	5.26	3.53	3.77	2.13	7.50	9.76	7.89	9.52	5.56	6.00	3.33	7.14	7.55	10.84	7.32	5.00	3.12	6.98	0.00	5.71	4.11	4.88	9.26	5.10	4.76	7.69	6.86	7.14	5.75	4.17	5.38	6.00	5.93	4.53	6.38	1.85	0.119206	0.657607
K	intron_retention	C19orf60	chr19	+	chr19:18701744-18702917				chr19:18701743-18701744;chr19:18702917-18702918		2.17	2.19	6.90	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	3.33	1.23	0.99	0.00	1.08	3.45	1.19	0.00	2.72	0.00	1.45	2.94	7.02	0.00	3.85	0.00	3.70	4.17	1.91	1.79	4.35	0.00	1.27	3.20	1.93	0.560894	1.000000
K	intron_retention	XXbac-BPG32J3.22	chr6	+	chr6:31636950-31637095				chr6:31636949-31636950;chr6:31637095-31637096		12.76	11.41	18.50	10.73	7.39	7.57	0.99	1.09	1.60	0.84	0.99	0.00	2.84	2.09	2.70	1.42	1.39	0.00	10.53	13.10	8.68	17.95	10.03	12.96	11.19	11.11	11.59	7.18	5.40	7.23	17.60	21.09	12.80	13.66	11.40	10.05	10.86	11.93	1.07	0.922700	1.000000
N	cassette	TMEM63A	chr1	-	chr1:226036256-226037612	chr1:226036256-226036597;chr1:226036714-226037612		chr1:226036598-226036713			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	91.67	100.00	NA	83.33	NA	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.245998	0.709176
K	intron_retention	PRMT2	chr21	+	chr21:48080875-48081711				chr21:48080874-48080875;chr21:48081711-48081712		19.05	36.84	21.74	NA	25.00	NA	14.63	6.67	4.35	11.76	11.11	30.77	8.11	20.00	6.90	6.67	8.70	0.00	40.00	12.90	29.41	6.67	15.15	14.29	16.67	14.29	21.74	15.38	22.73	13.33	10.71	11.54	14.29	NA	13.33	14.81	15.65	13.59	-2.06	0.819812	1.000000
N	intron_retention		chr20	-	chr20:61444613-61444672				chr20:61444612-61444613;chr20:61444672-61444673		88.68	100.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	97.26	100.00	97.30	100.00	98.91	100.00	100.00	100.00	100.00	91.67	98.51	100.00	98.63	-1.37	0.349336	1.000000
K	cassette	KTN1	chr14	+	chr14:56139731-56142552	chr14:56139731-56139889;chr14:56139974-56142552		chr14:56139890-56139973			51.28	37.33	62.50	65.91	55.56	64.71	26.56	24.19	21.92	27.06	26.00	29.41	39.34	54.00	44.29	46.55	37.37	53.66	40.00	62.96	50.82	71.01	50.53	61.46	NA	54.95	54.37	56.34	51.19	44.74	64.62	67.02	50.00	67.65	63.46	67.57	39.34	54.48	15.13	0.093619	0.658231
N	jcn_only_AA	LIPA	chr10	-	chr10:90996409-91005432;chr10:91003499-91005432;chr10:90988156-91005432;chr10:90999843-91005432	chr10:90991789-91005432		chr10:90988156-90991788;chr10:90991789-90996408;chr10:90996409-90999842;chr10:90999843-91003498	chr10:90988155-90988156;chr10:90991788-90991789;chr10:90996408-90996409;chr10:90999842-90999843		0.00	0.00	0.00	NA	6.67	NA	0.06	0.14	0.00	0.21	0.33	0.22	0.00	0.00	0.00	0.18	0.07	0.09	12.50	0.00	8.33	0.00	0.42	0.13	0.00	0.00	0.00	0.82	0.53	0.65	1.05	0.00	25.00	0.36	0.00	0.35	0.03	0.00	-0.03	0.214782	0.663989
N	jcn_only_AA	PLIN2	chr9	-	chr9:19108761-19116356;chr9:19108724-19116356	chr9:19108746-19116356					100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	94.59	100.00	100.00	100.00	100.00	93.51	100.00	100.00	NA	100.00	NA	97.40	100.00	100.00	100.00	100.00	NA	100.00	98.70	-1.30	0.711965	0.873712
K	intron_retention		chr1	+	chr1:2489908-2491261				chr1:2489907-2489908;chr1:2491261-2491262		13.13	11.19	16.09	14.29	8.81	8.33	3.70	4.62	1.69	5.94	7.62	4.44	8.49	3.85	4.24	5.93	8.65	5.26	15.85	17.65	7.69	15.45	9.56	21.70	12.04	12.33	15.28	12.86	9.43	9.16	9.09	10.26	7.06	19.70	15.75	20.21	9.84	10.71	0.87	0.827521	1.000000
N	cassette	GMPPA	chr2	+	chr2:220370278-220370701	chr2:220370278-220370436;chr2:220370484-220370701		chr2:220370437-220370483			100.00	100.00	100.00	95.83	93.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.37	100.00	100.00	100.00	90.00	100.00	83.95	100.00	100.00	100.00	100.00	100.00	100.00	94.29	94.44	100.00	92.59	100.00	97.22	100.00	2.78	0.136291	0.709176
K	alternative_acceptor	HNRNPA1	chr12	+	chr12:54678102-54680445	chr12:54678102-54678332		chr12:54678333-54680445	chr12:54680445-54680446		78.05	74.74	72.73	68.15	74.54	65.54	83.64	76.92	78.38	91.50	95.42	93.62	85.21	76.00	76.74	85.78	96.45	95.83	60.21	61.40	65.12	70.39	84.52	77.60	72.19	71.43	72.55	84.03	85.64	75.00	46.15	53.33	54.59	79.51	84.17	77.50	73.47	73.72	0.25	0.641196	0.865307
N	cassette	FCGRT	chr19	+	chr19:50019457-50029266;chr19:50016731-50029266;chr19:50017744-50029266	chr19:50016731-50027763,chr19:50017744-50027763,chr19:50019457-50027763;chr19:50028831-50029266		chr19:50027764-50028830			98.58	96.75	98.56	96.82	97.63	95.94	99.56	99.69	100.00	99.35	99.16	98.57	99.40	100.00	99.23	99.47	99.01	99.24	94.84	97.86	99.20	97.41	96.97	95.83	96.68	98.64	98.60	99.44	98.77	99.65	99.00	99.07	95.49	97.81	97.64	98.00	96.72	98.82	2.10	0.073277	0.634608
N	cassette	DGUOK	chr2	+	chr2:74154180-74173845;chr2:74154180-74184251	chr2:74154180-74166036;chr2:74166150-74184251,chr2:74166150-74173845		chr2:74166037-74166149			29.51	28.42	27.91	29.41	25.32	32.14	39.02	25.93	26.09	34.62	33.33	30.43	31.67	50.00	28.57	33.33	35.00	40.00	26.53	36.84	27.12	40.91	33.96	45.00	24.00	35.71	37.50	52.63	31.82	37.50	30.61	31.17	26.92	34.38	42.86	36.11	27.67	33.16	5.49	0.226495	0.709176
N	alternative_acceptor	CPNE1	chr20	-	chr20:34219096-34219189;chr20:34219092-34219189;chr20:34219086-34219189	chr20:34219120-34219189		chr20:34219086-34219091;chr20:34219092-34219095;chr20:34219096-34219119	chr20:34219085-34219086;chr20:34219091-34219092;chr20:34219095-34219096		0.00	0.00	2.44	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	3.57	NA	0.00	0.00	6.25	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
N	cassette	MRPL43	chr10	-	chr10:102743575-102747069;chr10:102746733-102747069	chr10:102743575-102746846,chr10:102746733-102746846;chr10:102746954-102747069		chr10:102746847-102746953			86.67	77.42	100.00	NA	81.48	NA	98.25	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	73.91	92.31	94.12	92.31	100.00	NA	NA	NA	100.00	92.86	100.00	100.00	NA	88.00	90.48	88.24	100.00	100.00	90.48	96.16	5.67	0.319102	0.709176
N	jcn_only_AA	RIN3	chr14	+	chr14:93125815-93142819;chr14:93125815-93132835	chr14:93125815-93142877		chr14:93132836-93142819;chr14:93142820-93142877	chr14:93142819-93142820;chr14:93142877-93142878		6.52	0.00	3.19	0.00	5.26	NA	7.63	0.00	8.33	4.05	4.48	2.63	6.87	6.25	0.00	4.55	5.50	0.00	0.00	0.00	0.00	6.90	5.95	0.00	0.00	18.75	5.26	0.00	2.76	0.00	NA	0.00	0.00	6.49	5.71	0.00	0.00	6.25	6.25	0.342791	0.663989
N	alternative_donor	PML	chr15	+	chr15:74326872-74335329;chr15:74326947-74335329;chr15:74333912-74335329	chr15:74330297-74335329		chr15:74326872-74326946;chr15:74326947-74330296;chr15:74330297-74333911	chr15:74326871-74326872;chr15:74326946-74326947;chr15:74330296-74330297		13.64	4.17	7.69	7.69	9.09	5.07	7.41	5.93	9.09	24.14	NA	34.57	9.52	14.97	6.02	17.86	23.08	16.98	0.00	4.85	5.88	NA	NA	7.04	7.14	11.76	6.45	17.86	NA	6.40	9.17	8.57	5.26	17.39	9.09	20.00	6.20	10.46	4.27	0.066141	0.440060
K	intron_retention		chr2	+	chr2:219254752-219255920				chr2:219254751-219254752;chr2:219255920-219255921		3.41	0.00	6.22	2.63	4.90	9.09	0.00	2.48	2.03	2.20	2.36	0.00	1.65	1.44	4.63	1.65	4.00	0.00	8.00	4.37	3.25	6.25	7.22	0.00	0.00	3.96	5.62	6.03	8.11	2.78	4.21	7.12	3.70	10.69	11.30	8.43	0.82	3.69	2.86	0.937434	1.000000
N	alternative_donor	AHNAK	chr11	-	chr11:62259304-62284481;chr11:62259304-62302474	chr11:62259304-62301132		chr11:62284482-62301132;chr11:62301133-62302474	chr11:62301132-62301133;chr11:62302474-62302475		1.39	3.35	2.44	1.37	0.59	1.59	4.93	4.92	NA	4.15	3.52	5.18	5.76	5.48	3.85	5.56	5.02	5.03	2.13	1.72	0.00	0.71	0.56	1.81	0.82	1.89	0.00	1.10	1.24	3.70	0.00	0.00	1.25	1.04	1.62	1.30	2.74	1.80	-0.94	0.701577	0.872310
K	alternative_acceptor	NOC2L	chr1	-	chr1:880527-880897	chr1:880803-880897		chr1:880527-880802	chr1:880526-880527		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.23	0.00	0.00	1.30	0.00	1.59	2.50	0.00	0.00	1.59	NA	2.44	0.00	0.00	0.00	0.00	2.50	2.04	0.00	0.00	5.13	0.65	0.00	-0.65	0.082866	0.585944
K	intron_retention	DNM2	chr19	+	chr19:10919257-10922939				chr19:10919256-10919257;chr19:10922939-10922940		4.48	10.17	4.43	NA	0.00	NA	0.00	0.00	1.56	2.27	0.00	3.70	1.71	1.47	1.33	0.00	3.03	0.00	NA	4.30	9.52	7.14	3.92	6.00	NA	3.37	6.19	2.27	2.00	0.00	5.26	3.90	0.00	4.76	7.23	6.93	0.85	3.83	2.98	0.954878	1.000000
K	intron_retention	PPP6R1	chr19	-	chr19:55741900-55741980				chr19:55741899-55741900;chr19:55741980-55741981		1.90	3.50	2.13	0.00	1.22	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	2.56	2.86	3.53	3.12	5.15	0.00	6.02	1.79	4.08	0.00	1.72	0.00	8.96	5.88	8.79	2.27	4.84	6.00	3.03	1.84	-1.19	0.943815	1.000000
K	jcn_only_AA	DYNLL1	chr12	+	chr12:120934020-120934218	chr12:120934020-120934204		chr12:120934205-120934218	chr12:120934218-120934219		9.76	7.62	7.20	11.54	12.61	8.79	10.75	13.27	10.28	11.21	10.30	10.19	9.72	12.44	9.33	11.36	11.58	11.30	9.49	8.75	8.50	11.83	10.95	8.77	6.37	10.20	8.56	11.35	11.11	11.56	8.56	6.09	7.67	12.11	9.46	8.83	8.58	9.98	1.40	0.099173	0.663989
N	alternative_acceptor		chr2	+	chr2:241514046-241514459	chr2:241514046-241514446		chr2:241514447-241514459	chr2:241514459-241514460		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	86.67	NA	NA	88.37	NA	100.00	100.00	100.00	NA	100.00	NA	81.82	100.00	76.92	95.24	90.62	88.89	100.00	100.00	0.00	0.914381	0.974492
N	alternative_acceptor	ARHGEF40	chr14	+	chr14:21555623-21556126	chr14:21555623-21556114		chr14:21556115-21556126	chr14:21556126-21556127		0.00	0.00	9.38	NA	3.33	NA	5.26	0.00	0.00	NA	2.22	NA	4.76	0.00	NA	NA	1.82	NA	0.00	0.00	0.00	NA	7.14	NA	NA	3.57	0.00	NA	0.00	NA	7.69	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.944848	0.986183
K	intron_retention	SLC25A39	chr17	-	chr17:42399136-42399786				chr17:42399135-42399136;chr17:42399786-42399787		0.00	0.00	1.49	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	2.94	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention		chr1	-	chr1:156907289-156908209				chr1:156907288-156907289;chr1:156908209-156908210		18.28	15.15	15.79	NA	0.00	NA	0.00	1.18	1.38	1.54	1.79	1.19	0.00	1.92	3.59	2.86	0.00	0.61	NA	13.27	5.26	12.50	9.43	13.46	0.00	8.72	12.22	6.67	8.11	9.03	14.52	15.15	7.69	17.39	11.69	19.64	0.00	11.00	11.00	0.480218	1.000000
K	intron_retention		chr3	+	chr3:52540267-52540707				chr3:52540266-52540267;chr3:52540707-52540708		1.45	6.16	1.54	0.00	0.00	0.00	0.52	0.00	0.00	0.00	0.00	0.00	0.46	0.00	0.00	0.00	0.21	0.00	4.65	0.00	NA	0.00	1.09	0.00	7.58	0.00	1.41	0.00	2.12	0.00	0.00	0.00	4.29	0.00	0.47	0.00	4.47	0.00	-4.47	0.057639	1.000000
K	cassette	HNRNPUL1	chr19	+	chr19:41810167-41812353	chr19:41810167-41811550;chr19:41811773-41812353		chr19:41811551-41811772			100.00	100.00	95.35	NA	100.00	NA	100.00	97.78	95.35	89.19	93.22	94.44	96.72	96.77	97.14	85.29	89.06	88.89	NA	100.00	100.00	93.33	89.47	NA	100.00	96.88	94.29	100.00	93.33	90.91	92.00	94.44	100.00	100.00	92.00	91.67	100.00	97.33	-2.67	0.164711	0.709176
N	alternative_acceptor	PDXK	chr21	+	chr21:45163689-45163819;chr21:45163689-45165959	chr21:45163689-45164351		chr21:45163820-45164351;chr21:45164352-45165959	chr21:45164351-45164352;chr21:45165959-45165960		2.33	2.72	4.26	0.74	0.89	0.00	0.49	0.49	0.99	0.41	0.56	0.00	0.56	0.49	1.39	0.33	0.28	0.00	0.78	2.52	0.54	1.59	2.43	2.35	2.48	2.67	2.44	0.60	0.87	0.92	2.83	3.85	1.29	5.29	5.61	2.26	1.04	2.42	1.39	0.423679	0.735404
N	alternative_donor	TRADD	chr16	-	chr16:67190572-67193576;chr16:67190572-67193740	chr16:67190572-67193727		chr16:67193577-67193727;chr16:67193728-67193740	chr16:67193727-67193728;chr16:67193740-67193741		4.00	5.88	0.00	NA	NA	0.00	8.33	4.23	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	NA	2.50	0.00	0.00	0.00	2.63	0.00	0.00	NA	NA	NA	2.00	2.94	1.25	-1.69	0.481012	0.740288
K	alternative_acceptor	GAK	chr4	-	chr4:843857-844723	chr4:844198-844723		chr4:843857-844197	chr4:843856-843857		4.44	3.10	4.35	4.58	3.85	3.37	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	1.15	1.75	1.05	0.00	4.90	5.21	3.91	3.92	4.39	5.41	3.87	3.27	2.31	2.38	2.08	3.12	5.17	6.43	5.29	3.31	3.77	6.71	3.49	3.86	0.37	0.805834	0.929300
N	jcn_only_AD	RP4-583P15.15,ZGPAT	chr20	+	chr20:62340332-62364570	chr20:62340517-62364570		chr20:62340332-62340516	chr20:62340331-62340332		97.50	100.00	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	96.00	100.00	100.00	100.00	97.22	100.00	98.75	-1.25	0.104303	0.644689
N	alternative_acceptor		chr19	+	chr19:38872869-38873896;chr19:38872869-38873036	chr19:38872869-38873892		chr19:38873037-38873892;chr19:38873893-38873896	chr19:38873892-38873893;chr19:38873896-38873897		92.65	94.19	92.14	95.98	97.33	96.09	99.19	99.05	99.15	98.58	99.53	99.07	98.29	97.70	95.83	97.16	98.67	98.85	96.27	92.59	96.15	91.87	92.81	91.03	94.02	94.89	94.52	95.04	96.88	96.70	87.12	87.04	94.29	92.96	92.86	91.28	95.28	93.77	-1.51	0.332450	0.709013
N	cassette	NCOR2	chr12	-	chr12:124810917-124816864;chr12:124812180-124816864	chr12:124812180-124815390,chr12:124810917-124815390;chr12:124815445-124816864		chr12:124815391-124815444			100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.29	100.00	100.00	100.00	94.00	100.00	99.07	100.00	100.00	100.00	100.00	96.97	95.38	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_last_exon	TSG101	chr11	-	chr11:18503010-18503176;chr11:18490766-18503176	chr11:18502183-18503176	chr11:18489883-18490765	chr11:18501858-18502182			100.00	98.80	100.00	100.00	98.92	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	98.48	100.00	97.92	100.00	100.00	100.00	100.00	100.00	94.74	98.61	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	99.40	100.00	0.60	0.255333	0.472280
K	alternative_acceptor	BRMS1	chr11	-	chr11:66105279-66105713	chr11:66105361-66105713		chr11:66105279-66105360	chr11:66105278-66105279		95.31	95.89	93.10	95.38	92.05	92.74	97.06	100.00	94.59	93.10	95.56	100.00	94.74	91.30	93.48	91.11	95.74	94.12	89.24	83.93	91.67	92.86	91.76	90.48	93.20	96.97	95.38	94.59	94.52	90.57	93.90	91.18	91.67	95.24	90.48	94.55	93.97	94.61	0.64	0.980351	0.994621
N	cassette	TBRG4	chr7	-	chr7:45143043-45145039;chr7:45143856-45145039	chr7:45143043-45144136,chr7:45143856-45144136;chr7:45144309-45145039		chr7:45144137-45144308			NA	38.10	64.00	NA	44.00	NA	96.15	91.67	92.31	84.85	82.76	NA	93.10	91.67	95.00	92.86	92.00	100.00	NA	63.64	61.11	60.00	37.14	81.82	NA	NA	44.00	75.00	55.17	84.21	66.67	63.64	28.57	65.00	50.00	88.89	65.60	79.17	13.57	0.497396	0.781419
K	alternative_last_exon	TTC17	chr11	+	chr11:43465760-43469551	chr11:43465760-43467480	chr11:43469552-43469672	chr11:43467481-43468269			75.00	84.62	62.50	NA	95.00	NA	40.00	65.00	52.00	33.33	55.00	58.33	40.00	71.43	60.00	73.33	48.00	57.14	90.91	75.00	90.00	83.33	76.92	85.71	NA	71.43	53.85	90.00	75.00	87.50	NA	66.67	100.00	69.57	75.00	62.50	84.62	71.43	-13.19	0.973185	0.981097
K	intron_retention		chr17	+	chr17:7483045-7483166				chr17:7483044-7483045;chr17:7483166-7483167		83.54	76.29	84.25	85.37	86.62	NA	85.43	84.48	84.23	78.69	78.52	79.35	84.03	84.47	83.62	84.64	78.73	77.88	75.51	79.76	83.04	81.64	83.56	82.47	100.00	84.21	84.27	85.32	82.77	84.42	80.98	80.55	78.43	87.05	86.80	85.91	81.23	83.88	2.64	0.302282	1.000000
K	intron_retention		chr17	-	chr17:80019230-80019493				chr17:80019229-80019230;chr17:80019493-80019494		10.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	1.67	0.00	0.00	7.14	0.00	5.00	2.17	5.00	0.00	NA	11.54	3.70	2.86	0.00	0.00	12.50	0.00	5.88	7.69	9.09	0.00	0.00	0.00	0.488826	1.000000
K	cassette	IFFO1	chr12	-	chr12:6660168-6664422	chr12:6660168-6660563;chr12:6660670-6664422		chr12:6660564-6660669			6.67	6.00	9.09	NA	8.33	NA	7.14	8.33	5.88	NA	11.76	NA	8.62	5.88	9.52	NA	9.80	NA	13.33	NA	NA	NA	13.64	10.00	0.00	23.08	18.75	NA	32.14	NA	NA	4.17	NA	7.14	17.14	7.14	7.14	7.50	0.36	0.429942	0.736841
K	intron_retention	LMF2	chr22	-	chr22:50942881-50942987				chr22:50942880-50942881;chr22:50942987-50942988		5.66	12.50	10.34	11.11	6.06	8.33	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	3.17	2.63	0.00	0.00	4.55	13.16	7.89	18.75	9.30	17.24	6.67	5.48	5.26	2.78	6.25	3.33	14.00	12.50	27.78	12.50	6.06	10.42	5.61	5.57	-0.04	0.937563	1.000000
K	intron_retention	MGAT4B	chr5	-	chr5:179225592-179225927				chr5:179225591-179225592;chr5:179225927-179225928		2.86	1.47	1.79	0.00	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	4.35	0.00	0.00	2.73	0.00	0.00	0.00	3.64	0.00	0.00	0.00	5.00	7.14	6.17	1.69	3.66	0.00	0.67	1.43	0.76	0.845497	1.000000
K	intron_retention		chr16	-	chr16:30364417-30364501				chr16:30364416-30364417;chr16:30364501-30364502		7.79	9.20	7.59	1.18	2.48	1.54	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	2.70	3.14	4.88	2.70	5.56	0.00	3.19	3.37	1.92	1.28	1.22	12.05	12.04	6.92	5.26	5.97	7.59	0.00	2.95	2.95	0.915797	1.000000
N	jcn_only_AA		chr3	+	chr3:127396407-127396538	chr3:127396407-127396518		chr3:127396519-127396538	chr3:127396538-127396539		94.44	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.87	96.00	100.00	100.00	92.50	100.00	100.00	100.00	97.56	100.00	100.00	100.00	91.18	100.00	91.18	100.00	100.00	100.00	100.00	98.00	-2.00	0.739662	0.883154
N	cassette	VPS28	chr8	-	chr8:145651156-145651562	chr8:145651156-145651257;chr8:145651447-145651562		chr8:145651258-145651446			100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	96.67	100.00	95.65	90.91	95.00	100.00	100.00	96.30	100.00	100.00	0.00	0.923845	0.980829
N	cassette	ATP6V1H	chr8	-	chr8:54682304-54714358;chr8:54684728-54714358	chr8:54684728-54708206,chr8:54682304-54708206;chr8:54708400-54714358		chr8:54708207-54708399			100.00	100.00	100.00	95.95	100.00	92.00	98.62	100.00	97.53	100.00	100.00	100.00	100.00	97.90	98.85	99.01	100.00	100.00	100.00	100.00	100.00	98.72	99.29	100.00	NA	100.00	100.00	99.17	100.00	98.97	98.15	100.00	100.00	99.52	98.54	99.41	100.00	100.00	0.00	0.466067	0.763563
N	cassette	TBC1D22A	chr22	+	chr22:47433095-47569140	chr22:47433095-47507403;chr22:47507500-47569140		chr22:47507404-47507499			100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	GPR137	chr11	+	chr11:64054487-64055811;chr11:64055419-64055811	chr11:64054487-64055536,chr11:64055419-64055536;chr11:64055687-64055811		chr11:64055537-64055686			76.19	72.41	73.91	NA	64.71	NA	100.00	88.24	96.43	90.00	90.91	NA	92.86	80.00	75.00	NA	90.91	NA	65.00	77.78	95.45	NA	70.00	NA	83.33	77.78	75.00	NA	92.31	NA	80.00	79.31	75.00	NA	53.85	66.67	79.16	78.89	-0.27	0.808543	0.936947
N	intron_retention		chr11	+	chr11:67816899-67817129				chr11:67816898-67816899;chr11:67817129-67817130		100.00	100.00	100.00	100.00	100.00	95.52	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.85	95.88	99.34	100.00	100.00	100.00	100.00	95.00	98.88	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	0.00	0.862334	1.000000
N	jcn_only_AD	MNDA	chr1	+	chr1:158817707-158818979;chr1:158817876-158818979	chr1:158817680-158818979		chr1:158817680-158817706;chr1:158817707-158817875	chr1:158817679-158817680;chr1:158817706-158817707		5.01	2.30	4.76	1.67	0.00	5.48	4.07	6.85	4.17	6.90	5.95	5.91	5.58	6.07	5.78	5.00	5.88	6.77	6.28	7.22	8.88	7.55	5.26	4.71	4.99	4.53	6.12	3.29	5.88	5.91	5.36	5.96	7.80	3.92	8.06	4.39	5.29	5.71	0.43	0.470272	0.721034
K	coord_cassette	GGA1	chr22	+	chr22:38019641-38025468	chr22:38019641-38020975;chr22:38021084-38021803;chr22:38021957-38025468		chr22:38020976-38021083;chr22:38021804-38021956			92.31	100.00	91.07	NA	81.25	NA	96.88	100.00	94.12	85.71	95.00	100.00	100.00	96.00	95.83	93.94	95.92	100.00	85.71	95.24	93.33	85.19	87.10	93.33	82.35	93.55	100.00	86.21	86.67	NA	90.62	94.12	100.00	84.91	92.31	90.91	98.44	94.39	-4.05	0.899531	0.968725
K	cassette	CERS5	chr12	-	chr12:50524478-50528328	chr12:50524478-50526744;chr12:50527852-50528328		chr12:50526745-50527851			4.26	0.00	5.08	0.00	0.00	0.00	5.56	4.35	5.36	5.56	4.35	0.00	2.86	2.04	3.92	0.00	2.56	0.00	0.00	2.78	4.26	0.00	3.23	4.76	7.14	4.88	3.08	0.00	4.44	2.78	15.38	5.41	0.00	8.82	3.92	6.52	1.43	4.30	2.88	0.237675	0.709176
N	alternative_donor	MYL6	chr12	+	chr12:56553407-56553808	chr12:56553515-56553808		chr12:56553407-56553514	chr12:56553406-56553407		82.48	100.00	100.00	80.57	80.13	76.81	84.33	80.86	83.38	82.81	82.24	83.18	84.03	83.17	81.86	85.45	81.28	80.68	90.42	92.09	90.72	85.68	82.45	87.58	83.31	82.03	84.18	85.85	80.92	84.11	92.48	92.05	91.71	78.92	81.55	80.69	87.38	82.83	-4.55	0.337082	0.650093
N	alternative_acceptor	PARVG,TAB1	chr22	+	chr22:44583759-44584993	chr22:44583759-44584964		chr22:44584965-44584993	chr22:44584993-44584994		3.92	11.45	5.45	0.00	5.71	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.73	0.00	2.70	3.33	6.25	3.12	2.88	0.00	9.43	0.00	7.25	2.86	3.40	0.00	4.76	5.88	4.00	4.00	3.48	0.00	3.35	1.67	-1.69	0.248763	0.706085
N	alternative_acceptor	MANBA	chr4	-	chr4:103554635-103555944;chr4:103554631-103555944	chr4:103553439-103555944		chr4:103553439-103554630;chr4:103554631-103554634	chr4:103553438-103553439;chr4:103554630-103554631		96.30	98.02	95.15	100.00	96.61	NA	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	96.30	100.00	97.18	100.00	100.00	94.00	97.32	100.00	96.49	100.00	94.34	94.80	96.36	89.11	95.29	93.83	100.00	95.44	-4.56	0.031108	0.557523
N	alternative_acceptor	ERGIC3	chr20	+	chr20:42089239-42089348;chr20:42089239-42091983	chr20:42089239-42089342		chr20:42089343-42089348;chr20:42089349-42091983	chr20:42089348-42089349;chr20:42091983-42091984		97.62	100.00	100.00	98.18	98.48	97.78	100.00	NA	100.00	98.81	100.00	100.00	100.00	NA	100.00	99.21	96.61	97.44	97.56	100.00	94.59	100.00	100.00	100.00	96.77	100.00	98.18	100.00	100.00	98.46	95.35	95.45	90.00	98.04	100.00	97.59	98.78	98.81	0.03	0.671315	0.880186
N	jcn_only_AD	C1orf123	chr1	-	chr1:53681729-53682451;chr1:53681729-53682453	chr1:53681729-53682449		chr1:53682450-53682451;chr1:53682452-53682453	chr1:53682451-53682452;chr1:53682453-53682454		0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.490682	0.735270
K	alternative_acceptor	TNK2	chr3	-	chr3:195597250-195599146;chr3:195597077-195599146	chr3:195597276-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		5.56	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	1.96	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.230765	0.684127
N	cassette	AAMP	chr2	-	chr2:219130185-219131165	chr2:219130185-219130301;chr2:219130406-219131165		chr2:219130302-219130405			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.65	NA	100.00	100.00	100.00	100.00	100.00	NA	90.00	87.88	100.00	100.00	95.45	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	ADAM28	chr8	+	chr8:24201098-24208744	chr8:24201098-24207376;chr8:24207486-24208744		chr8:24207377-24207485			96.97	100.00	98.97	100.00	98.08	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	94.12	100.00	100.00	94.12	100.00	98.28	100.00	97.37	100.00	100.00	NA	100.00	99.26	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	97.94	100.00	100.00	0.00	0.802772	0.936947
N	cassette	IGBP1	chrX	+	chrX:69368691-69385682	chrX:69368691-69370059;chrX:69370173-69385682		chrX:69370060-69370172			93.33	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	DGAT1	chr8	-	chr8:145540773-145541206	chr8:145541109-145541206					100.00	100.00	100.00	100.00	95.83	88.24	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	88.89	97.62	100.00	100.00	96.77	98.15	100.00	100.00	0.00	0.491697	0.749150
K	intron_retention		chr3	+	chr3:183898670-183898982				chr3:183898669-183898670;chr3:183898982-183898983		93.39	91.57	93.01	100.00	88.57	NA	92.86	92.72	89.73	87.95	88.80	89.55	95.08	91.37	91.61	91.73	89.55	89.23	87.50	90.10	90.91	93.44	90.14	85.00	100.00	93.33	92.36	88.89	91.72	85.00	100.00	91.26	91.18	88.76	86.27	85.37	92.22	93.03	0.81	0.980429	1.000000
N	intron_retention		chr20	-	chr20:3684563-3684681				chr20:3684562-3684563;chr20:3684681-3684682		81.18	83.33	89.47	NA	NA	100.00	96.67	98.53	99.10	100.00	97.37	98.88	97.71	98.34	99.01	96.08	98.67	96.61	NA	82.81	100.00	NA	100.00	82.14	100.00	91.47	89.74	91.67	100.00	90.91	84.38	96.67	NA	88.46	88.89	84.68	97.19	87.92	-9.27	0.540686	1.000000
N	jcn_only_AA		chrX	+	chrX:56758633-56813506;chrX:56758633-56837452;chrX:56758633-56825142	chrX:56758633-56843752		chrX:56813507-56825142;chrX:56825143-56837452;chrX:56837453-56843752	chrX:56825142-56825143;chrX:56837452-56837453;chrX:56843752-56843753		100.00	100.00	98.39	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	94.64	100.00	100.00	100.00	100.00	100.00	99.32	100.00	97.37	100.00	100.00	100.00	99.09	97.37	100.00	100.00	100.00	97.46	100.00	100.00	98.28	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	FDFT1	chr8	+	chr8:11689180-11695896	chr8:11689180-11690554		chr8:11690555-11695896	chr8:11695896-11695897		13.64	9.09	8.82	NA	4.55	NA	0.00	4.76	0.00	0.00	0.00	0.00	0.00	5.56	1.64	0.00	0.00	0.00	3.23	10.00	6.45	8.33	14.29	NA	3.57	13.33	10.00	0.00	3.12	0.00	15.38	15.79	3.45	8.70	8.33	7.14	3.34	11.66	8.32	0.010787	0.475629
N	alternative_acceptor	IFFO1	chr12	-	chr12:6650809-6657230	chr12:6651020-6657230		chr12:6650809-6651019	chr12:6650808-6650809		6.67	7.03	5.36	7.14	4.90	NA	0.00	0.00	0.00	0.00	2.25	NA	1.69	0.00	3.45	0.00	0.79	NA	1.45	2.08	5.00	0.00	6.40	0.00	4.62	6.98	3.17	0.00	2.72	3.23	7.69	1.47	6.67	0.00	4.17	3.03	3.16	4.38	1.22	0.867308	0.955323
N	alternative_acceptor	PRR14	chr16	+	chr16:30667261-30667352	chr16:30667261-30667330		chr16:30667331-30667352	chr16:30667352-30667353		1.59	2.11	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	4.08	2.94	0.00	1.54	0.00	0.00	1.61	1.33	0.00	0.00	0.00	5.05	3.82	5.74	0.00	2.00	4.26	1.05	1.60	0.55	0.896842	0.963205
N	jcn_only_AA	SVBP	chr1	-	chr1:43282252-43282860	chr1:43282277-43282860		chr1:43282252-43282276	chr1:43282251-43282252		11.76	0.00	0.00	NA	0.00	0.00	6.25	0.00	0.00	7.69	2.13	0.00	0.00	0.00	6.90	0.00	0.00	0.00	25.00	13.33	12.00	0.00	5.77	0.00	NA	0.00	4.55	6.25	6.00	6.90	0.00	13.33	7.14	11.11	6.45	0.00	6.25	0.00	-6.25	0.531703	0.770744
N	jcn_only_AA	ZNF592	chr15	+	chr15:85341706-85341818	chr15:85341706-85341792		chr15:85341793-85341818	chr15:85341818-85341819		0.00	0.00	0.00	NA	0.00	NA	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	jcn_only_AA	CNOT3	chr19	+	chr19:54657578-54658995;chr19:54657578-54659046	chr19:54657578-54657680		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		0.00	0.00	2.22	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	3.23	0.00	0.00	2.13	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	AXIN1	chr16	-	chr16:339608-343487	chr16:339608-341189;chr16:341298-343487		chr16:341190-341297			20.00	32.14	36.36	30.77	38.46	NA	26.67	30.00	29.41	30.00	27.78	50.00	31.58	16.67	25.00	27.59	44.44	23.08	45.45	NA	26.67	23.53	37.50	42.86	58.33	NA	42.86	25.00	31.82	20.00	31.25	30.77	18.75	36.36	25.00	26.09	31.86	25.00	-6.86	0.147065	0.709176
N	jcn_only_AA		chr17	+	chr17:76415757-76419272;chr17:76415757-76416294	chr17:76415757-76420141		chr17:76416295-76419272;chr17:76419273-76420141	chr17:76419272-76419273;chr17:76420141-76420142		88.57	100.00	87.69	80.00	100.00	71.43	100.00	90.00	86.96	100.00	NA	NA	NA	91.67	82.89	76.92	NA	NA	100.00	80.95	100.00	58.33	100.00	85.00	NA	100.00	93.75	93.75	100.00	73.53	88.00	77.78	100.00	NA	NA	70.45	100.00	89.28	-10.72	0.010115	0.482846
K	intron_retention	GMPR2	chr14	+	chr14:24706359-24706450				chr14:24706358-24706359;chr14:24706450-24706451		2.44	0.00	6.00	NA	0.00	NA	0.00	4.00	0.00	7.14	2.78	10.00	2.63	0.00	0.00	4.35	0.00	NA	0.00	8.82	0.00	10.00	4.55	NA	NA	7.32	3.77	0.00	0.00	6.25	0.00	4.65	0.00	14.29	0.00	14.29	0.00	3.22	3.22	0.167069	1.000000
K	intron_retention	HDGF	chr1	-	chr1:156713248-156713443				chr1:156713247-156713248;chr1:156713443-156713444		2.63	4.94	5.62	3.03	1.30	0.00	0.00	0.00	0.62	0.00	0.65	0.00	0.67	0.00	1.24	0.65	0.00	0.00	2.86	3.80	4.44	6.52	2.56	6.17	5.13	6.25	5.66	1.27	4.00	3.45	4.44	6.04	11.36	0.88	3.77	4.20	3.90	3.21	-0.69	0.496161	1.000000
K	intron_retention	ZBTB45	chr19	-	chr19:59025678-59027761				chr19:59025677-59025678;chr19:59027761-59027762		9.09	0.00	11.76	NA	0.00	NA	9.09	7.69	0.00	5.00	0.00	NA	4.55	8.33	NA	0.00	7.14	NA	0.00	NA	NA	NA	10.53	NA	NA	10.00	7.69	NA	NA	NA	NA	7.69	NA	NA	10.00	NA	2.27	8.71	6.44	0.863413	1.000000
N	intron_retention		chr9	+	chr9:140509453-140509548				chr9:140509452-140509453;chr9:140509548-140509549		51.85	65.17	73.68	68.75	68.57	50.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	57.83	58.33	77.27	NA	69.57	NA	69.81	60.00	81.25	NA	100.00	80.00	55.00	56.25	65.56	NA	46.15	80.00	65.37	56.66	-8.70	0.866691	1.000000
N	jcn_only_AD		chr21	-	chr21:15858436-15868177;chr21:15858436-15861277;chr21:15858436-15870758	chr21:15858436-15870762		chr21:15861278-15868177;chr21:15868178-15870758;chr21:15870759-15870762	chr21:15868177-15868178;chr21:15870758-15870759;chr21:15870762-15870763		99.06	100.00	100.00	100.00	100.00	97.27	99.23	99.00	99.59	100.00	100.00	98.51	100.00	99.22	99.42	99.28	100.00	98.87	100.00	100.00	100.00	100.00	98.35	100.00	100.00	98.95	99.10	100.00	100.00	100.00	98.71	100.00	94.87	99.44	100.00	100.00	100.00	99.03	-0.97	0.876286	0.937734
N	cassette	NASP	chr1	+	chr1:46082376-46083732;chr1:46082066-46083732	chr1:46082066-46083134,chr1:46082376-46083134;chr1:46083264-46083732		chr1:46083135-46083263			96.95	100.00	97.52	96.97	99.27	97.58	98.31	100.00	100.00	96.00	96.67	97.30	98.18	97.10	96.88	96.55	97.17	95.65	94.05	96.91	97.53	100.00	100.00	97.62	98.01	100.00	97.45	96.67	100.00	98.85	94.17	96.85	95.41	95.31	95.16	96.33	98.09	97.03	-1.07	0.880693	0.962089
N	alternative_acceptor	SERTAD3	chr19	-	chr19:40947994-40950121;chr19:40948396-40950121	chr19:40948509-40950121		chr19:40947994-40948395;chr19:40948396-40948508	chr19:40947993-40947994;chr19:40948395-40948396		4.08	0.00	5.88	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	0.00	0.00	0.00	4.26	3.12	0.00	0.00	0.00	13.79	15.38	0.00	11.11	4.76	0.00	0.00	4.17	4.17	0.065360	0.584083
N	alternative_acceptor	TRIM21	chr11	-	chr11:4407084-4407386;chr11:4407141-4407386;chr11:4407110-4407386;chr11:4406413-4407386	chr11:4406625-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		0.00	1.92	0.00	4.08	3.23	3.51	0.00	1.18	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	6.25	1.46	3.64	0.00	0.00	2.27	8.33	2.91	0.00	0.00	0.00	2.25	0.00	0.00	5.41	0.00	0.00	0.00	3.67	0.59	-3.08	0.119828	0.606219
K	mutually_exclusive	ACP1	chr2	+	chr2:271940-272191,chr2:272306-275139	chr2:271940-272036,chr2:272151-275139	chr2:272192-272305	chr2:272037-272150			87.50	96.43	87.10	92.86	88.89	90.00	91.53	84.62	80.00	88.57	91.11	90.24	92.42	92.86	86.67	88.46	93.02	87.50	95.00	86.67	86.96	88.00	93.94	89.47	NA	NA	92.31	95.00	90.62	91.30	NA	59.09	70.59	66.67	63.33	62.07	92.42	87.09	-5.33	0.809635	0.837553
K	intron_retention	LMNA	chr1	+	chr1:156084858-156100465				chr1:156084857-156084858;chr1:156100465-156100466		100.00	93.02	100.00	100.00	95.79	95.65	94.90	96.02	100.00	98.58	97.62	100.00	95.64	96.37	93.48	94.88	100.00	96.89	95.74	100.00	98.15	98.52	96.36	100.00	93.48	100.00	100.00	97.59	95.50	100.00	93.33	98.28	95.65	100.00	96.02	100.00	95.27	98.19	2.91	0.127327	1.000000
N	alternative_acceptor	PCNXL3	chr11	+	chr11:65403275-65403644;chr11:65403275-65403421	chr11:65403275-65403401		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		12.50	8.33	4.35	NA	10.00	NA	0.00	0.00	0.00	0.00	9.09	NA	0.00	0.00	4.00	NA	0.00	NA	0.00	6.67	18.18	NA	5.56	NA	NA	0.00	9.52	NA	9.09	NA	6.67	7.14	0.00	NA	7.69	5.56	0.00	3.33	3.33	0.352428	0.709013
K	alternative_last_exon	TSFM	chr12	+	chr12:58186857-58196337;chr12:58186857-58195956;chr12:58186857-58201646	chr12:58186857-58189959	chr12:58196338-58196557;chr12:58195957-58196047;chr12:58201647-58201854	chr12:58189960-58191370			97.37	100.00	93.15	100.00	100.00	100.00	100.00	97.78	95.12	100.00	94.44	100.00	94.44	95.59	93.81	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	96.34	100.00	100.00	100.00	100.00	98.57	100.00	90.91	100.00	100.00	100.00	97.58	-2.42	0.289741	0.491468
N	cassette	RFC2	chr7	-	chr7:73653319-73657475	chr7:73653319-73654267;chr7:73654426-73657475		chr7:73654268-73654425			100.00	93.55	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.174763	0.709176
N	alternative_acceptor	CREB1,INO80B,INO80B-WBP1	chr2	+	chr2:208442380-208461637	chr2:208442380-208444244		chr2:208444245-208461637	chr2:208461637-208461638		0.00	NA	2.08	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
N	jcn_only_AD	PRKCSH	chr19	+	chr19:11558434-11558507;chr19:11558323-11558507	chr19:11558413-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		59.09	37.14	47.62	58.33	52.17	43.75	57.78	52.17	33.33	54.05	55.56	57.14	50.79	61.11	47.62	52.17	44.44	39.13	41.67	47.83	51.35	35.71	39.47	50.00	35.29	60.00	31.58	31.82	48.72	56.25	42.11	48.39	40.91	47.37	43.48	45.95	41.29	55.63	14.34	0.065304	0.579821
K	intron_retention	CDIPT	chr16	-	chr16:29870656-29870762				chr16:29870655-29870656;chr16:29870762-29870763		1.79	0.00	3.23	0.00	1.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	1.30	0.00	0.00	0.00	4.00	5.48	5.26	0.00	1.45	2.44	0.00	0.00	0.00	0.969475	1.000000
K	intron_retention		chr19	-	chr19:1109598-1109681				chr19:1109597-1109598;chr19:1109681-1109682		6.47	7.50	5.30	7.69	11.11	5.88	0.00	0.00	0.58	1.16	0.00	0.00	0.00	0.00	1.76	0.94	0.00	0.00	0.00	5.61	9.59	9.73	7.41	8.00	0.00	2.59	4.91	6.21	6.67	6.07	8.82	7.37	6.67	5.62	7.02	5.78	0.00	4.10	4.10	0.666191	1.000000
N	jcn_only_AA	ATF6B	chr6	-	chr6:32084882-32085099;chr6:32084885-32085099	chr6:32084908-32085099		chr6:32084882-32084884;chr6:32084885-32084907	chr6:32084881-32084882;chr6:32084884-32084885		8.20	0.00	9.23	NA	3.57	NA	4.55	7.58	7.69	4.55	4.81	2.53	5.60	8.93	8.97	5.00	3.67	2.44	7.69	8.70	8.82	13.04	6.12	8.70	0.00	0.00	11.76	11.11	6.56	13.33	0.00	10.87	0.00	5.88	2.22	0.00	2.27	7.89	5.62	0.277598	0.663989
K	alternative_acceptor	CARS	chr11	-	chr11:3023284-3023770	chr11:3023405-3023770		chr11:3023284-3023404	chr11:3023283-3023284		6.56	1.92	8.70	12.12	9.52	11.11	0.00	5.56	5.80	4.17	3.45	6.67	2.56	7.41	9.09	6.67	7.89	NA	8.25	7.27	4.67	5.88	5.36	4.00	8.82	7.69	8.11	13.04	6.67	7.69	7.14	5.26	7.14	5.56	8.16	13.46	4.85	7.21	2.36	0.220651	0.671511
K	intron_retention		chr7	+	chr7:150839341-150839498				chr7:150839340-150839341;chr7:150839498-150839499		2.74	2.75	4.35	0.00	2.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	NA	1.64	6.00	0.00	2.78	3.06	7.50	0.00	3.33	4.50	2.04	0.00	0.00	1.89	4.50	3.70	2.61	3.17	3.03	0.82	2.31	1.50	0.932709	1.000000
N	jcn_only_AD	UNC50	chr2	+	chr2:99226503-99227237	chr2:99227098-99227237		chr2:99226503-99227097	chr2:99226502-99226503		0.00	0.00	5.33	NA	0.00	NA	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.373901	0.657607
K	jcn_only_AD	MLKL	chr16	-	chr16:74708999-74709252	chr16:74708999-74709221		chr16:74709222-74709252	chr16:74709252-74709253		10.53	0.00	15.38	NA	NA	NA	0.00	7.02	7.14	8.33	6.67	5.00	0.00	4.11	8.33	NA	NA	0.00	NA	9.23	13.33	NA	20.00	0.00	NA	18.60	15.91	4.55	0.00	8.00	16.36	10.45	0.00	13.64	0.00	15.91	0.00	9.88	9.88	0.004644	0.177805
K	cassette	CNN2	chr19	+	chr19:1032696-1036414	chr19:1032696-1036128;chr19:1036246-1036414		chr19:1036129-1036245			82.76	100.00	90.57	NA	85.71	NA	94.55	94.67	95.00	93.94	96.70	95.83	97.70	95.88	93.18	95.65	96.30	96.30	NA	89.19	81.25	81.25	80.22	91.43	72.73	94.87	87.76	95.45	84.09	93.75	92.31	85.71	NA	84.85	93.55	84.71	96.12	93.49	-2.63	0.958366	0.988542
K	jcn_only_AA	XPO6	chr16	-	chr16:28117774-28118842	chr16:28117819-28118842		chr16:28117774-28117818	chr16:28117773-28117774		98.94	100.00	100.00	NA	100.00	NA	100.00	98.94	98.36	100.00	98.36	100.00	100.00	100.00	100.00	98.21	97.10	96.88	92.31	97.75	95.00	100.00	100.00	98.15	NA	98.91	100.00	97.78	100.00	100.00	97.30	97.83	100.00	98.28	98.08	98.53	100.00	98.92	-1.08	0.915547	0.970942
N	cassette	WDR91	chr7	-	chr7:134871922-134874095	chr7:134871922-134873184;chr7:134873298-134874095		chr7:134873185-134873297			90.00	100.00	83.87	NA	96.30	NA	93.62	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	86.67	88.89	100.00	97.92	81.82	100.00	100.00	100.00	NA	94.44	NA	100.00	96.55	92.31	96.88	100.00	100.00	100.00	95.00	-5.00	0.402722	0.717862
K	jcn_only_AA	SLCO3A1	chr15	+	chr15:92690390-92694184	chr15:92690390-92694179		chr15:92694180-92694184	chr15:92694184-92694185		100.00	100.00	97.78	100.00	83.33	100.00	96.55	93.24	100.00	100.00	93.48	97.60	93.75	100.00	98.70	93.33	97.37	97.67	NA	96.67	93.33	100.00	97.62	98.40	NA	92.98	100.00	94.12	96.55	96.38	90.91	100.00	92.31	100.00	100.00	97.03	95.15	94.95	-0.20	0.993614	0.997956
K	intron_retention		chr2	-	chr2:85625906-85626303				chr2:85625905-85625906;chr2:85626303-85626304		82.65	82.64	100.00	93.33	90.30	90.32	84.34	100.00	100.00	84.62	100.00	84.15	100.00	84.74	100.00	100.00	88.53	89.31	89.51	89.80	89.55	92.31	92.31	100.00	100.00	85.76	100.00	93.53	93.33	93.85	86.83	90.04	90.45	94.87	94.54	94.11	89.98	86.30	-3.69	0.799843	1.000000
N	cassette	LINC01272	chr20	+	chr20:48884201-48894027;chr20:48884201-48894713	chr20:48884201-48892182;chr20:48892273-48894027,chr20:48892273-48894713		chr20:48892183-48892272			95.45	98.85	95.38	94.44	94.51	95.79	97.41	95.89	97.30	96.52	96.46	98.61	99.28	98.35	95.24	93.64	96.49	95.73	93.51	100.00	94.59	96.00	97.26	94.55	100.00	100.00	100.00	91.13	94.64	95.62	95.45	97.83	93.42	95.70	95.65	98.11	98.13	97.12	-1.01	0.772373	0.931719
N	mutually_exclusive	LGMN	chr14	-	chr14:93170707-93172827,chr14:93172999-93176016	chr14:93170707-93170984,chr14:93171053-93176016	chr14:93172828-93172998	chr14:93170985-93171052			68.42	77.92	66.67	67.74	73.27	72.97	80.00	72.41	100.00	76.19	71.43	79.59	50.00	39.47	26.92	54.64	44.69	44.83	64.23	55.56	65.38	60.27	61.35	62.73	73.44	61.29	57.89	80.56	85.12	84.75	70.00	69.23	78.57	84.21	72.00	69.01	75.68	64.86	-10.83	0.199977	0.461486
K	intron_retention	ATXN2L	chr16	+	chr16:28847807-28848048				chr16:28847806-28847807;chr16:28848048-28848049		80.82	94.44	94.74	89.47	97.33	71.79	77.78	66.67	71.11	64.00	71.79	56.25	82.50	66.67	86.00	71.43	69.23	55.00	93.62	88.37	88.89	94.12	92.86	89.66	100.00	75.00	93.67	80.95	90.74	82.50	91.07	91.67	93.33	84.91	95.52	86.67	93.47	77.91	-15.56	0.145722	1.000000
N	alternative_donor	TCIRG1	chr11	+	chr11:67816762-67817129;chr11:67816899-67817129;chr11:67816922-67817129;chr11:67816758-67817129	chr11:67816905-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		29.10	24.26	27.65	25.29	24.92	17.81	2.48	7.38	1.82	1.14	3.65	1.22	7.48	9.15	15.58	2.78	2.65	0.00	17.74	24.77	19.49	24.72	22.88	15.79	17.68	23.55	28.57	24.81	23.81	23.91	24.54	28.00	15.54	24.79	25.44	21.05	16.61	24.05	7.44	0.285835	0.650093
N	jcn_only_AD	NELFB	chr9	+	chr9:140158802-140160328;chr9:140158732-140160328	chr9:140158810-140160328		chr9:140158732-140158801;chr9:140158802-140158809	chr9:140158731-140158732;chr9:140158801-140158802		100.00	100.00	100.00	100.00	100.00	NA	100.00	96.77	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	95.45	94.12	90.48	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.846631	0.928405
K	jcn_only_AA	L3MBTL3,PPP2R5D	chr6	+	chr6:42978308-42978401	chr6:42978308-42978371		chr6:42978372-42978401	chr6:42978401-42978402		0.00	0.00	5.00	NA	NA	NA	2.63	4.17	0.00	0.00	4.65	0.00	0.00	0.00	0.00	6.25	4.17	8.33	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.767223	0.896441
N	alternative_acceptor	SNX8	chr7	-	chr7:2311600-2314746;chr7:2314005-2314746	chr7:2311607-2314746		chr7:2311600-2311606;chr7:2311607-2314004	chr7:2311599-2311600;chr7:2311606-2311607		100.00	100.00	100.00	95.83	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.68	100.00	100.00	NA	95.65	NA	97.30	97.22	95.65	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.72	97.50	97.44	100.00	100.00	0.00	0.574819	0.838844
K	cassette	SLC35B1	chr17	-	chr17:47783259-47784326	chr17:47783259-47783565;chr17:47783672-47784326		chr17:47783566-47783671			94.44	100.00	90.91	NA	90.91	NA	96.43	100.00	100.00	100.00	97.37	96.00	97.06	92.31	100.00	93.75	97.50	95.45	83.33	80.00	100.00	95.45	86.84	88.89	NA	92.31	88.46	95.00	93.75	92.86	100.00	92.86	NA	96.55	91.89	86.96	96.75	93.38	-3.37	0.835843	0.945344
N	jcn_only_AD	SYNGR2	chr17	+	chr17:76167136-76167819;chr17:76167671-76167819	chr17:76167731-76167819					83.56	87.04	86.55	80.56	86.05	77.27	92.74	93.93	93.56	89.77	91.67	89.87	93.62	95.04	91.99	89.61	91.95	90.60	86.67	86.12	89.05	81.82	84.60	83.22	84.44	91.97	85.16	85.42	88.56	90.48	87.80	85.88	76.40	84.77	80.20	83.48	86.86	89.88	3.03	0.380662	0.657607
K	intron_retention	ETHE1	chr19	-	chr19:44011055-44012095				chr19:44011054-44011055;chr19:44012095-44012096		4.00	8.50	12.73	0.88	2.08	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.05	3.45	4.65	0.00	3.19	0.00	10.42	0.00	2.63	0.00	0.94	0.00	4.55	0.00	4.41	2.44	2.30	0.76	4.23	1.73	-2.51	0.952069	1.000000
N	cassette	SPTAN1	chr9	+	chr9:131389778-131392599;chr9:131389778-131394405	chr9:131389778-131390203;chr9:131390222-131392599,chr9:131390222-131394405		chr9:131390204-131390221			76.54	62.16	68.59	59.09	68.49	56.25	72.73	89.36	69.77	75.00	69.70	74.36	78.35	87.23	66.90	72.92	67.21	83.78	81.13	77.92	68.45	69.70	63.00	70.97	71.74	73.03	58.52	75.00	72.90	76.67	78.87	65.66	66.67	69.05	73.47	70.30	72.23	78.40	6.16	0.057379	0.600839
N	alternative_donor	PRICKLE4,TOMM6	chr6	+	chr6:41757071-41757305	chr6:41757075-41757305		chr6:41757071-41757074	chr6:41757070-41757071		86.96	100.00	100.00	91.67	94.06	95.31	90.43	94.44	91.30	96.30	95.28	95.92	100.00	100.00	96.61	96.92	94.35	95.38	93.57	85.71	96.00	94.83	95.35	92.31	100.00	100.00	95.00	96.83	98.11	95.65	93.55	100.00	97.60	96.83	94.20	100.00	98.80	94.00	-4.80	0.276637	0.648084
K	jcn_only_AD	PRR13,RP11-793H13.8	chr12	+	chr12:53835585-53836478;chr12:53835602-53836478	chr12:53835577-53836478		chr12:53835577-53835584;chr12:53835585-53835601	chr12:53835576-53835577;chr12:53835584-53835585		92.54	83.67	86.50	95.45	88.89	NA	82.02	90.12	84.08	89.39	85.00	89.47	81.20	88.73	86.18	88.50	86.78	90.00	84.85	92.31	87.78	89.39	84.44	85.96	68.42	88.37	89.03	84.48	88.68	81.82	93.89	90.91	93.33	84.21	88.04	85.23	82.84	91.22	8.37	0.044215	0.497155
K	intron_retention	DCXR	chr17	-	chr17:79994890-79995325				chr17:79994889-79994890;chr17:79995325-79995326		0.00	3.45	6.25	0.00	4.88	0.00	1.56	0.00	0.00	3.57	3.33	0.00	2.56	0.00	0.00	3.28	2.78	0.00	1.49	5.88	2.13	0.00	5.77	0.00	3.57	0.00	4.35	0.00	5.00	0.00	8.70	5.88	5.00	0.00	4.00	5.71	3.00	0.00	-3.00	0.663194	1.000000
K	jcn_only_AA	EWSR1	chr22	+	chr22:29668421-29669729;chr22:29668421-29669726	chr22:29668421-29674119					12.07	15.56	10.92	NA	16.00	NA	7.55	7.85	5.11	5.18	7.76	6.11	11.11	7.23	8.05	7.95	5.80	6.56	NA	9.43	5.00	14.49	13.75	12.14	30.00	12.31	11.30	10.94	11.54	13.33	9.26	9.82	NA	8.33	9.52	14.87	13.34	9.34	-3.99	0.288375	0.663989
K	alternative_acceptor	CNBP	chr3	-	chr3:128890124-128890288;chr3:128890153-128890288;chr3:128890127-128890288	chr3:128890121-128890288		chr3:128890121-128890123;chr3:128890124-128890126;chr3:128890127-128890152	chr3:128890120-128890121;chr3:128890123-128890124;chr3:128890126-128890127		74.38	84.21	76.50	76.19	69.51	NA	85.53	85.63	84.88	83.43	81.02	84.72	83.45	84.97	84.10	82.62	82.81	83.75	75.00	77.57	75.34	80.95	74.90	72.60	NA	77.05	82.04	84.07	82.29	77.94	72.22	78.07	84.21	75.85	78.24	72.11	84.21	77.31	-6.90	0.224397	0.676947
K	jcn_only_AA	LPCAT2,PRMT7	chr16	+	chr16:55571545-55579646	chr16:55571545-55575749		chr16:55575750-55579646	chr16:55579646-55579647		19.35	60.00	5.88	NA	64.71	NA	6.56	6.85	6.67	3.45	8.93	0.00	3.80	15.38	NA	3.33	5.21	3.03	100.00	33.33	81.82	NA	38.89	NA	NA	18.60	18.18	NA	29.41	NA	30.77	30.00	81.82	20.00	12.50	18.75	60.00	18.98	-41.02	0.204976	0.663989
K	cassette	MRPL22	chr5	+	chr5:154320826-154335930	chr5:154320826-154330380;chr5:154330499-154335930		chr5:154330381-154330498			95.45	73.91	96.67	80.00	92.86	NA	89.19	100.00	96.55	100.00	78.57	94.74	94.29	100.00	93.75	89.74	90.00	95.24	100.00	94.12	95.65	92.31	94.87	87.50	NA	100.00	92.59	86.67	93.75	96.00	87.50	85.19	100.00	95.83	92.86	92.59	94.29	97.72	3.43	0.408078	0.723701
K	intron_retention	SIGLEC1	chr20	-	chr20:3677536-3677731				chr20:3677535-3677536;chr20:3677731-3677732		7.63	30.77	5.00	NA	NA	NA	1.13	1.35	0.66	0.00	0.00	1.88	2.81	1.98	2.00	2.38	0.00	3.05	NA	13.21	0.00	25.00	5.71	19.00	22.22	6.27	7.50	22.73	10.53	11.69	12.00	6.56	NA	22.22	0.00	10.56	12.51	6.95	-5.56	0.665322	1.000000
K	cassette	DOCK11	chrX	+	chrX:117817181-117819650	chrX:117817181-117819482;chrX:117819501-117819650		chrX:117819483-117819500			1.85	6.49	2.33	0.00	3.33	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.00	0.00	3.03	0.00	3.08	5.26	0.00	2.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.93	0.484975	0.774273
N	jcn_only_AD	UBR4	chr1	-	chr1:19404561-19407842	chr1:19404561-19405854		chr1:19405855-19407842	chr1:19407842-19407843		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	2.63	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.953971	0.974593
K	alternative_donor	CDK5RAP3,RP11-6N17.9	chr17	+	chr17:46051060-46051296;chr17:46051063-46051296	chr17:46051017-46051296		chr17:46051017-46051059;chr17:46051060-46051062	chr17:46051016-46051017;chr17:46051059-46051060		100.00	100.00	98.72	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	96.88	100.00	100.00	100.00	NA	97.06	100.00	100.00	100.00	97.78	100.00	100.00	98.48	100.00	96.36	100.00	100.00	100.00	100.00	98.18	94.64	100.00	100.00	100.00	0.00	0.819487	0.942369
K	alternative_first_exon	KIAA0930	chr22	-	chr22:45607989-45609201,chr22:45607989-45631129,chr22:45607989-45632050,chr22:45607989-45632893,chr22:45607989-45633036,chr22:45607989-45635092,chr22:45607989-45642380;chr22:45607989-45636520;chr22:45607989-45622032	chr22:45607989-45608145	chr22:45636521-45636650;chr22:45622033-45622264	chr22:45608146-45608369			4.17	3.57	3.70	NA	4.00	NA	1.50	0.00	4.17	2.99	2.65	0.00	0.56	3.77	5.26	1.16	1.35	0.00	0.00	4.55	NA	0.00	4.92	0.00	12.50	4.55	4.76	2.94	2.56	NA	4.76	4.17	10.00	3.57	6.74	6.90	2.54	4.36	1.82	0.659638	0.759153
N	alternative_donor	GIMAP1-GIMAP5,GIMAP5	chr7	+	chr7:150437592-150437966;chr7:150437727-150437966	chr7:150434797-150437966		chr7:150434797-150437591;chr7:150437592-150437726	chr7:150434796-150434797;chr7:150437591-150437592		74.07	82.98	70.89	NA	NA	NA	96.49	97.14	96.55	96.55	100.00	100.00	96.72	95.62	94.87	95.74	100.00	100.00	80.00	73.77	88.24	73.33	72.22	66.67	86.67	77.51	74.60	90.48	85.71	91.67	80.00	62.34	83.33	56.25	73.33	57.14	85.00	78.75	-6.25	0.395506	0.658590
K	alternative_donor	SMUG1	chr12	-	chr12:54576408-54577548	chr12:54576408-54577439		chr12:54577440-54577548	chr12:54577548-54577549		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.31	NA	100.00	100.00	93.94	100.00	100.00	NA	96.43	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.12	NA	100.00	95.65	96.30	NA	100.00	92.31	100.00	100.00	0.00	0.174773	0.563271
N	cassette	MRPL13	chr8	-	chr8:121408365-121432091	chr8:121408365-121426229;chr8:121426352-121432091		chr8:121426230-121426351			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.600908	0.850526
N	alternative_donor	DNMT1	chr19	-	chr19:10246964-10247760	chr19:10246964-10247751		chr19:10247752-10247760	chr19:10247760-10247761		6.00	0.00	4.55	3.85	4.84	NA	5.88	0.00	4.76	7.32	7.55	18.18	7.08	11.11	5.26	6.15	5.13	14.29	4.55	6.90	3.70	7.14	5.22	NA	0.00	0.00	0.00	4.05	4.65	NA	0.00	4.76	2.08	8.57	7.02	10.00	3.31	3.00	-0.31	0.754991	0.900575
N	jcn_only_AA	MYO1F	chr19	-	chr19:8615567-8616623	chr19:8615579-8616623		chr19:8615567-8615578	chr19:8615566-8615567		93.75	92.00	95.78	NA	92.00	NA	94.92	92.86	94.74	100.00	96.55	92.31	93.10	94.31	100.00	96.55	100.00	100.00	89.47	91.35	93.94	86.36	94.90	100.00	100.00	95.12	92.47	100.00	90.77	100.00	100.00	96.25	100.00	92.86	100.00	100.00	94.01	94.03	0.02	0.873569	0.951276
N	cassette	MDFIC	chr7	+	chr7:114582453-114655741;chr7:114586269-114655741	chr7:114586269-114619560,chr7:114582453-114619560;chr7:114619837-114655741		chr7:114619561-114619836			100.00	86.21	100.00	92.86	100.00	95.12	100.00	100.00	97.60	97.91	97.94	96.58	93.71	100.00	95.24	94.70	97.16	96.39	84.62	95.24	87.88	100.00	95.24	96.92	100.00	100.00	97.56	100.00	96.23	98.57	85.71	100.00	84.62	94.44	95.89	96.50	89.96	100.00	10.04	0.197578	0.709176
K	intron_retention	NSUN5	chr7	-	chr7:72717527-72717596				chr7:72717526-72717527;chr7:72717596-72717597		20.00	15.72	29.27	20.00	13.89	11.25	13.04	0.00	6.67	0.00	0.00	NA	0.00	4.17	0.00	0.00	6.38	0.00	16.54	11.11	19.35	20.00	17.78	21.43	11.18	13.04	14.63	23.08	20.59	12.50	24.44	34.69	25.00	25.00	24.00	17.39	14.38	12.07	-2.30	0.940483	1.000000
N	alternative_acceptor	MAPKAP1	chr9	-	chr9:128201292-128206779	chr9:128202133-128206779		chr9:128201292-128202132	chr9:128201291-128201292		9.76	4.21	7.46	6.85	3.48	6.17	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	2.70	1.47	0.00	0.00	3.28	5.17	4.55	5.75	6.77	7.69	6.45	2.56	5.56	3.77	4.08	5.26	6.82	5.26	3.12	5.83	6.14	5.21	3.20	3.87	0.67	0.540745	0.821220
N	alternative_acceptor		chr22	+	chr22:44601710-44601986;chr22:44601710-44602142	chr22:44601710-44602196		chr22:44601987-44602142;chr22:44602143-44602196	chr22:44602142-44602143;chr22:44602196-44602197		100.00	99.32	100.00	100.00	98.73	100.00	100.00	100.00	100.00	100.00	98.79	100.00	99.29	100.00	100.00	100.00	100.00	100.00	98.86	97.22	98.73	100.00	99.50	100.00	98.70	93.33	98.81	100.00	99.51	100.00	100.00	100.00	99.32	100.00	99.31	100.00	99.31	100.00	0.69	0.497583	0.791230
N	jcn_only_AA	MSI2,NUP85	chr17	+	chr17:73230884-73231215;chr17:73230884-73231210;chr17:73230884-73231207	chr17:73230884-73231194		chr17:73231195-73231207;chr17:73231208-73231210;chr17:73231211-73231215	chr17:73231207-73231208;chr17:73231210-73231211;chr17:73231215-73231216		70.37	78.53	84.09	77.78	82.35	72.88	95.35	NA	100.00	100.00	100.00	NA	100.00	100.00	83.33	95.00	97.44	NA	79.58	83.33	79.31	93.75	83.95	NA	79.57	NA	96.00	90.48	89.86	90.00	78.57	80.65	73.75	88.46	75.00	85.71	79.57	80.95	1.38	0.860396	0.944317
K	jcn_only_AA	PEX16	chr11	-	chr11:45931729-45932448	chr11:45931864-45932448		chr11:45931729-45931863	chr11:45931728-45931729		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	78.95	100.00	100.00	NA	100.00	89.47	95.00	100.00	100.00	NA	96.88	100.00	98.28	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	95.56	95.52	100.00	100.00	100.00	100.00	100.00	0.00	0.808132	0.919497
K	intron_retention	IFI44	chr1	+	chr1:79128564-79129449				chr1:79128563-79128564;chr1:79129449-79129450		7.25	6.21	10.77	8.49	4.48	2.33	0.00	2.46	3.32	6.98	0.00	0.60	4.48	4.19	7.58	5.88	2.22	1.55	4.23	6.13	3.83	9.59	4.44	4.50	5.56	9.38	7.53	10.33	7.50	4.25	10.53	9.97	6.85	21.32	15.62	8.92	5.02	6.69	1.67	0.648755	1.000000
N	jcn_only_AD	CPVL	chr7	-	chr7:29160688-29185736;chr7:29160688-29185956	chr7:29160688-29186044		chr7:29185737-29185956;chr7:29185957-29186044	chr7:29185956-29185957;chr7:29186044-29186045		91.96	92.47	91.86	88.89	91.86	NA	92.25	93.83	92.86	93.48	92.53	94.91	92.03	86.36	90.00	94.57	95.05	94.83	83.33	95.18	100.00	91.89	92.82	94.67	NA	91.38	91.07	93.07	93.33	92.00	93.59	89.83	90.00	91.63	92.83	91.21	92.03	92.78	0.75	0.371548	0.657607
K	intron_retention	PTPRA,VPS16	chr20	+	chr20:2845702-2845793				chr20:2845701-2845702;chr20:2845793-2845794		6.12	8.11	6.38	10.53	7.32	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	3.23	4.44	7.69	9.09	5.88	0.00	2.78	0.00	5.88	2.17	3.57	8.57	5.56	9.43	10.34	12.82	2.33	2.38	3.00	0.62	0.672062	1.000000
K	coord_cassette	DGUOK	chr2	+	chr2:74174034-74185272	chr2:74174034-74177727;chr2:74177860-74184251;chr2:74184368-74185272		chr2:74177728-74177859;chr2:74184252-74184367			18.18	22.48	18.52	33.33	32.14	20.90	32.35	36.36	22.22	31.25	35.48	33.33	32.56	33.33	28.00	38.10	32.26	25.00	17.65	20.37	19.23	39.13	29.63	27.27	22.77	23.26	25.00	45.00	38.30	36.84	12.73	18.00	19.81	30.95	25.93	26.42	22.62	21.82	-0.81	0.903602	0.969866
N	alternative_donor	MYO9B	chr19	+	chr19:17186685-17212469	chr19:17187278-17212469		chr19:17186685-17187277	chr19:17186684-17186685		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	5.88	0.00	0.00	NA	0.00	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
K	intron_retention	LMNA	chr1	+	chr1:156108549-156108870				chr1:156108548-156108549;chr1:156108870-156108871		15.91	7.07	16.67	1.69	3.31	4.55	0.00	0.00	0.00	0.00	0.73	0.00	2.41	0.00	NA	0.00	0.00	0.00	6.25	11.63	11.36	5.56	5.56	4.17	8.57	4.08	5.26	3.33	1.68	0.00	5.00	13.51	1.96	4.51	4.76	1.69	4.33	4.54	0.21	0.831327	1.000000
K	jcn_only_AA	ATG16L2	chr11	+	chr11:72535888-72536393	chr11:72535888-72536346		chr11:72536347-72536393	chr11:72536393-72536394		92.50	85.58	85.25	NA	87.50	NA	100.00	NA	NA	NA	NA	NA	89.47	NA	NA	NA	NA	NA	82.05	82.35	85.71	100.00	86.67	NA	72.97	100.00	90.24	NA	100.00	NA	100.00	91.18	78.79	88.89	91.67	NA	83.81	96.25	12.44	0.159052	0.663989
K	intron_retention	PLRG1	chr4	-	chr4:155457897-155458437				chr4:155457896-155457897;chr4:155458437-155458438		0.00	1.37	0.00	0.00	2.15	0.95	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	1.30	9.09	1.67	5.26	0.00	0.00	2.13	0.00	2.08	0.00	5.56	1.75	0.00	2.63	3.28	2.17	0.00	0.00	0.00	0.787481	1.000000
K	intron_retention	GBF1	chr10	+	chr10:104141013-104141812				chr10:104141012-104141013;chr10:104141812-104141813		0.00	0.00	2.27	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	3.57	0.00	0.00	3.23	11.11	0.00	0.00	2.38	0.00	0.00	5.26	7.69	5.88	2.78	5.56	0.00	5.88	0.00	0.00	0.00	0.947150	1.000000
N	jcn_only_AA	SDF4	chr1	-	chr1:1153069-1153837;chr1:1153161-1153837	chr1:1153185-1153837		chr1:1153069-1153160;chr1:1153161-1153184	chr1:1153068-1153069;chr1:1153160-1153161		0.37	1.16	1.29	1.91	2.01	1.62	1.43	1.60	5.14	5.43	1.42	2.14	2.10	1.32	5.09	8.72	3.47	3.42	1.35	1.97	1.10	2.89	2.79	2.22	0.00	0.50	2.15	3.43	2.82	4.33	0.49	1.11	0.65	1.12	1.14	1.74	1.25	0.91	-0.34	0.859451	0.944239
K	alternative_first_exon	ANKHD1,ANKHD1-EIF4EBP3,EIF4EBP3	chr5	+	chr5:139927472-139928490;chr5:139921867-139928490	chr5:139927426-139928490	chr5:139918504-139921866	chr5:139927251-139927425			29.41	45.00	36.00	33.33	41.94	40.00	80.00	NA	80.00	76.92	81.82	NA	68.42	NA	75.00	70.00	85.00	NA	25.00	20.00	36.84	40.00	36.36	40.00	36.36	20.00	33.33	NA	60.00	50.00	23.08	30.43	22.22	26.67	26.67	44.44	40.68	21.54	-19.14	0.061418	0.200066
N	alternative_acceptor	XPC	chr3	-	chr3:14188169-14188789;chr3:14187660-14188789	chr3:14187114-14188789		chr3:14187114-14187659;chr3:14187660-14188168	chr3:14187113-14187114;chr3:14187659-14187660		7.50	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	2.44	0.00	0.00	0.00	0.483308	0.782166
N	alternative_donor	PTPN6	chr12	+	chr12:7064890-7065304	chr12:7064920-7065304		chr12:7064890-7064919	chr12:7064889-7064890		99.19	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.61	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	99.28	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	LRP1	chr12	+	chr12:57572387-57572672				chr12:57572386-57572387;chr12:57572672-57572673		14.29	22.00	19.57	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	11.11	NA	NA	3.33	4.17	14.81	5.26	2.56	0.00	0.00	0.00	NA	NA	28.57	0.00	3.45	2.44	14.81	5.26	-9.55	0.666346	1.000000
K	jcn_only_AD	DNAJC19,TUSC2	chr3	-	chr3:50363618-50363815	chr3:50363618-50363787		chr3:50363788-50363815	chr3:50363815-50363816		93.18	88.32	100.00	90.16	94.23	93.48	94.87	95.24	100.00	92.86	100.00	100.00	93.33	92.31	94.44	92.41	93.85	100.00	92.94	96.77	92.31	94.12	93.51	94.87	90.30	100.00	95.00	95.12	97.70	93.33	89.13	91.23	94.29	88.46	93.22	91.67	93.13	94.21	1.08	0.288335	0.657607
K	intron_retention	WIPI2	chr7	+	chr7:5265562-5266810				chr7:5265561-5265562;chr7:5266810-5266811		7.50	5.26	6.41	0.00	0.00	8.33	0.00	2.08	0.00	0.00	0.00	0.00	1.35	0.00	1.61	0.00	0.00	0.00	6.45	2.63	5.00	0.00	2.13	9.09	0.00	0.00	0.00	0.00	2.56	5.88	3.33	2.74	0.00	2.44	6.67	10.26	0.68	2.35	1.68	0.902863	1.000000
N	alternative_last_exon	NR1H3	chr11	+	chr11:71209575-71209932,chr11:71209575-71210007,chr11:71209575-71212333;chr11:71209575-71232135	chr11:71209575-71212347	chr11:71232136-71232250	chr11:71212348-71212862			96.00	100.00	100.00	100.00	100.00	99.03	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.24	100.00	91.67	NA	97.81	100.00	100.00	100.00	100.00	100.00	99.39	100.00	100.00	100.00	100.00	97.06	100.00	100.00	99.35	100.00	100.00	100.00	99.69	100.00	0.31	0.906106	0.954876
N	jcn_only_AA	AP5Z1	chr7	+	chr7:4829561-4830089;chr7:4829561-4829844	chr7:4829561-4830019		chr7:4829845-4830019;chr7:4830020-4830089	chr7:4830019-4830020;chr7:4830089-4830090		5.88	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	NA	2.38	0.00	0.00	4.00	0.00	8.00	0.00	5.56	0.00	4.17	0.00	0.00	0.00	7.69	0.00	0.00	5.56	6.98	0.00	0.00	0.00	0.278926	0.663989
K	intron_retention	POLR2A	chr17	+	chr17:7414908-7415129				chr17:7414907-7414908;chr17:7415129-7415130		7.14	5.41	6.29	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	0.00	0.00	NA	7.59	NA	4.00	1.23	1.89	0.00	4.12	2.70	0.00	0.00	0.00	11.90	7.00	NA	4.00	3.23	7.76	0.00	5.63	5.63	0.419864	1.000000
K	intron_retention	NME2	chr17	+	chr17:49243859-49244187				chr17:49243858-49243859;chr17:49244187-49244188		3.12	4.38	1.56	3.68	3.38	2.22	3.31	1.10	0.96	3.93	3.24	2.80	18.91	16.67	10.65	20.39	24.17	21.97	5.24	3.57	3.62	3.80	3.97	5.59	3.79	3.85	0.00	4.27	2.97	2.24	8.11	1.72	5.24	5.93	7.04	5.80	4.81	3.71	-1.10	0.984732	1.000000
N	jcn_only_AA	HAX1	chr1	+	chr1:154245253-154245817;chr1:154245253-154245811	chr1:154245253-154245955		chr1:154245812-154245817;chr1:154245818-154245955	chr1:154245817-154245818;chr1:154245955-154245956		10.71	5.00	11.76	16.67	8.11	NA	8.62	6.76	10.00	19.23	15.00	13.04	9.52	8.06	7.20	12.20	11.54	16.67	NA	8.16	15.56	12.50	4.76	14.29	NA	5.88	6.35	8.33	15.79	16.67	12.20	4.55	0.00	7.50	5.45	11.11	6.81	8.11	1.30	0.293304	0.663989
N	intron_retention		chr12	-	chr12:109016693-109017242				chr12:109016692-109016693;chr12:109017242-109017243		100.00	100.00	100.00	NA	100.00	NA	98.84	100.00	98.59	100.00	98.52	94.29	99.01	100.00	98.84	100.00	98.76	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.322415	1.000000
K	jcn_only_AD	MGLL	chr3	-	chr3:127540682-127540828;chr3:127540682-127541151	chr3:127540682-127541926		chr3:127540829-127541151;chr3:127541152-127541926	chr3:127541151-127541152;chr3:127541926-127541927		65.62	64.29	65.71	86.67	83.33	88.00	84.55	78.70	72.92	85.41	87.47	80.92	72.46	72.67	78.10	84.82	84.58	74.39	NA	66.67	84.62	86.78	85.71	79.02	NA	76.84	67.39	88.00	91.07	91.15	86.67	73.68	100.00	85.03	89.05	79.43	78.50	74.75	-3.75	0.528280	0.754861
K	intron_retention	ARMCX6	chrX	-	chrX:100870751-100871661				chrX:100870750-100870751;chrX:100871661-100871662		27.78	23.08	25.00	10.00	18.52	NA	13.04	18.60	29.63	8.82	11.94	2.33	21.21	16.22	17.65	24.39	9.64	9.09	20.00	16.67	16.67	35.71	31.43	16.67	0.00	22.73	21.43	30.00	16.67	12.50	25.00	33.33	13.64	21.43	25.71	15.79	16.82	20.66	3.84	0.863031	1.000000
K	cassette	NDUFB1	chr14	-	chr14:92583987-92587985	chr14:92583987-92585192;chr14:92585311-92587985		chr14:92585193-92585310			0.90	1.26	3.01	1.60	1.36	1.77	3.14	4.72	4.88	4.44	2.16	4.26	0.00	0.00	0.00	0.00	0.00	0.00	3.65	5.26	2.03	2.63	4.12	2.20	0.97	5.80	1.74	1.18	1.72	1.33	5.49	3.97	2.83	0.00	2.75	3.03	2.04	4.99	2.95	0.189022	0.709176
N	jcn_only_AA	AP3B1	chr5	-	chr5:77298880-77311233;chr5:77298902-77311233	chr5:77299319-77311233		chr5:77298880-77298901;chr5:77298902-77299318	chr5:77298879-77298880;chr5:77298901-77298902		1.96	8.00	0.00	0.00	6.98	NA	0.00	2.17	0.00	8.06	0.00	9.52	0.00	6.45	2.13	8.33	0.00	0.00	0.00	0.00	2.86	4.35	0.00	6.56	NA	0.00	4.69	4.65	3.77	2.27	0.00	4.76	0.00	6.17	5.00	4.76	0.00	0.98	0.98	0.933897	0.978703
N	jcn_only_AA		chr19	+	chr19:18286508-18287857;chr19:18286508-18287971;chr19:18286508-18287917	chr19:18286508-18287958					90.91	100.00	NA	NA	76.47	NA	90.48	100.00	NA	NA	95.65	NA	100.00	100.00	NA	NA	100.00	NA	77.27	87.50	94.12	NA	76.92	90.91	NA	83.33	75.00	NA	93.75	NA	75.68	61.90	88.89	91.67	100.00	NA	90.48	89.20	-1.28	0.766512	0.896441
N	jcn_only_AA	DENND3	chr8	+	chr8:142190954-142195237	chr8:142190954-142192419		chr8:142192420-142195237	chr8:142195237-142195238		7.69	0.00	4.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	9.52	NA	0.00	0.00	0.00	NA	6.56	25.00	6.38	NA	13.33	12.50	20.00	0.00	0.00	0.00	0.519304	0.760908
K	alternative_acceptor	PIK3R5	chr17	-	chr17:8789920-8790412	chr17:8789923-8790412		chr17:8789920-8789922	chr17:8789919-8789920		57.14	37.50	46.94	NA	47.37	NA	52.70	46.25	51.11	48.82	54.41	55.88	50.00	52.03	42.86	52.66	53.68	51.24	NA	48.44	NA	52.17	46.85	54.37	50.00	56.72	51.85	47.06	55.56	58.33	50.00	50.00	NA	54.95	52.99	53.49	50.00	51.02	1.02	0.327757	0.709013
N	jcn_only_AD	ZFAS1	chr20	+	chr20:47893379-47895640;chr20:47895254-47895640;chr20:47894935-47895640;chr20:47895128-47895640;chr20:47893757-47895640	chr20:47895276-47895640		chr20:47893379-47893756;chr20:47893757-47894934;chr20:47894935-47895127;chr20:47895128-47895253;chr20:47895254-47895275	chr20:47893378-47893379;chr20:47893756-47893757;chr20:47894934-47894935;chr20:47895127-47895128;chr20:47895253-47895254		3.31	7.11	6.25	4.27	5.49	6.35	4.93	9.22	7.52	4.95	3.87	2.96	7.52	6.12	6.31	4.59	6.50	2.27	3.51	6.25	5.16	4.59	6.54	5.00	1.75	5.43	6.25	5.41	5.70	3.36	5.15	7.37	5.03	3.65	7.61	5.71	4.98	5.78	0.79	0.447823	0.706163
N	alternative_acceptor	TNIP2	chr4	-	chr4:2744248-2746113	chr4:2744280-2746113		chr4:2744248-2744279	chr4:2744247-2744248		12.16	5.88	7.41	3.26	4.48	1.14	0.00	1.10	0.00	0.75	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00	4.88	4.55	3.94	4.35	3.01	0.00	4.30	7.00	0.88	2.60	2.36	5.75	8.33	5.88	3.53	5.62	3.41	0.00	4.59	4.59	0.233777	0.685872
K	cassette	DAP3	chr1	+	chr1:155701825-155707947	chr1:155701825-155706796;chr1:155706855-155707947		chr1:155706797-155706854			90.48	100.00	92.31	88.24	96.08	93.75	100.00	94.74	90.48	95.00	100.00	100.00	93.33	100.00	97.22	91.18	100.00	100.00	91.67	90.32	95.56	94.87	95.92	100.00	86.67	97.22	83.78	100.00	97.37	91.30	90.91	93.02	89.83	89.58	89.36	91.89	92.50	92.82	0.32	0.898946	0.968962
K	alternative_donor	MRPL51	chr12	-	chr12:6602139-6602624;chr12:6602139-6602223;chr12:6602139-6602839	chr12:6602139-6602882		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		26.47	31.88	28.57	42.86	36.36	57.14	25.76	17.65	14.29	39.58	30.88	45.16	34.09	20.00	17.65	12.90	20.55	20.83	21.31	13.33	19.72	3.03	13.11	8.33	27.27	12.50	22.00	17.50	20.55	13.51	14.29	25.53	30.00	31.43	23.81	28.12	28.63	15.97	-12.66	0.003304	0.141260
K	cassette	COLGALT1	chr19	+	chr19:17679523-17688003	chr19:17679523-17683291;chr19:17683412-17688003		chr19:17683292-17683411			100.00	100.00	100.00	NA	100.00	NA	98.76	100.00	100.00	98.36	97.89	100.00	98.85	100.00	98.33	97.09	98.41	94.74	100.00	100.00	94.44	100.00	98.90	100.00	100.00	100.00	97.67	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.21	100.00	100.00	0.00	0.175066	0.709176
K	intron_retention	EIF1AD	chr11	-	chr11:65766869-65767037				chr11:65766868-65766869;chr11:65767037-65767038		0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.00	8.00	6.67	0.00	0.00	3.03	0.00	0.00	0.00	0.995920	1.000000
N	jcn_only_AD	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298130;chr11:57297708-57298195	chr11:57297708-57298199		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.18	0.00	0.00	0.00	0.00	0.00	0.00	8.34	8.34	0.182287	0.657607
K	intron_retention	EPHX1	chr1	+	chr1:226032325-226032846				chr1:226032324-226032325;chr1:226032846-226032847		8.82	0.38	10.00	0.00	0.49	0.00	3.82	12.50	8.11	0.00	5.42	0.00	6.41	23.81	7.27	2.99	7.35	0.00	0.60	9.68	0.80	0.00	1.72	1.46	1.90	11.32	5.36	0.00	0.00	0.47	2.82	7.46	1.01	1.10	0.41	1.54	1.46	10.50	9.04	0.037775	1.000000
K	jcn_only_AD	C14orf159	chr14	+	chr14:91655515-91662718	chr14:91656152-91662718		chr14:91655515-91656151	chr14:91655514-91655515		0.00	0.00	23.08	NA	0.00	NA	1.75	7.14	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	22.22	NA	NA	0.00	NA	0.00	20.00	NA	NA	0.00	NA	NA	15.79	0.00	8.33	0.00	6.25	0.00	13.57	13.57	0.106914	0.646283
K	intron_retention	DHPS	chr19	-	chr19:12786748-12786830				chr19:12786747-12786748;chr19:12786830-12786831		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	3.03	2.15	0.00	0.00	0.00	0.00	0.00	0.00	0.852467	1.000000
K	intron_retention	PRRC2A	chr6	+	chr6:31604386-31604509				chr6:31604385-31604386;chr6:31604509-31604510		4.04	0.00	4.95	0.00	3.80	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32	0.00	0.00	0.00	6.06	1.64	7.50	1.39	6.38	0.00	2.22	3.88	2.44	1.64	1.92	1.82	5.00	1.52	7.35	5.26	3.26	0.00	2.02	2.02	0.242222	1.000000
K	jcn_only_AA	UROD	chr1	+	chr1:45477958-45478578	chr1:45477958-45478528		chr1:45478529-45478578	chr1:45478578-45478579		12.50	0.00	14.29	NA	6.67	NA	0.00	17.65	30.00	17.86	14.29	10.00	9.09	15.38	41.67	10.81	6.98	0.00	14.29	13.04	24.00	11.11	11.63	0.00	0.00	0.00	8.70	7.69	6.45	0.00	22.22	35.48	NA	0.00	22.22	6.90	0.00	14.21	14.21	0.069798	0.663989
K	intron_retention	GUSB	chr7	-	chr7:65439429-65439512				chr7:65439428-65439429;chr7:65439512-65439513		8.70	2.78	3.33	0.00	5.66	0.00	1.09	0.00	0.00	0.00	0.79	0.00	1.56	0.00	0.00	0.00	0.00	0.00	11.76	11.11	2.60	0.00	6.25	0.00	5.45	0.00	4.88	0.00	2.61	0.00	2.63	7.89	6.06	0.00	6.12	1.02	4.12	1.31	-2.80	0.905093	1.000000
K	cassette	ZSCAN16-AS1	chr6	-	chr6:28090990-28104522	chr6:28090990-28093400;chr6:28093598-28104522		chr6:28093401-28093597			NA	0.00	11.11	0.00	1.14	0.60	2.82	5.88	28.57	0.00	4.44	0.00	2.82	4.55	12.50	1.75	3.03	0.00	0.00	7.69	2.82	0.00	1.89	0.00	0.00	5.88	4.00	1.64	1.74	0.00	6.67	8.00	0.70	0.00	2.33	2.04	0.35	5.88	5.53	0.000099	0.038633
N	coord_cassette	SDSL	chr12	+	chr12:113860283-113871938	chr12:113860283-113865766;chr12:113865962-113866224;chr12:113866265-113866964;chr12:113867105-113871938		chr12:113865767-113865961;chr12:113866225-113866264;chr12:113866965-113867104			95.56	100.00	100.00	NA	100.00	NA	100.00	96.39	100.00	97.06	100.00	96.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.56	100.00	100.00	NA	100.00	100.00	100.00	91.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177512	0.643829
N	jcn_only_AA	EXOSC10	chr1	-	chr1:11129788-11130956	chr1:11129880-11130956		chr1:11129788-11129879	chr1:11129787-11129788		0.00	6.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.95	0.00	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	1.52	0.00	0.00	0.00	0.00	0.00	0.200542	0.663989
N	cassette	SNHG5	chr6	-	chr6:86387211-86387853;chr6:86387594-86387853	chr6:86387211-86387671,chr6:86387594-86387671;chr6:86387751-86387853		chr6:86387672-86387750			94.59	97.25	98.31	98.40	97.96	98.18	96.84	90.62	99.03	99.32	98.78	98.33	75.00	100.00	94.29	95.92	86.67	84.62	97.16	96.92	97.49	98.53	99.29	98.56	96.88	100.00	98.95	98.31	96.20	96.70	98.65	99.17	97.37	98.95	98.41	99.05	97.02	97.78	0.77	0.425003	0.732911
N	jcn_only_AA	SDHAF4	chr6	+	chr6:71289270-71298317	chr6:71289270-71295290		chr6:71295291-71298317	chr6:71298317-71298318		0.00	0.00	0.00	NA	28.57	NA	0.00	0.00	0.00	7.14	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	28.57	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	11.76	NA	0.00	NA	0.00	0.00	0.00	0.218091	0.663989
K	jcn_only_AA	HSD17B4	chr5	+	chr5:118862915-118865595	chr5:118862915-118865588		chr5:118865589-118865595	chr5:118865595-118865596		95.00	86.73	100.00	100.00	96.10	100.00	98.10	100.00	94.74	96.20	96.12	94.67	97.76	96.77	98.61	100.00	100.00	98.18	92.50	89.66	90.91	94.44	93.08	93.10	100.00	100.00	95.70	94.00	94.95	89.47	93.33	93.94	100.00	95.00	95.56	97.32	97.93	95.88	-2.05	0.984158	0.995778
N	jcn_only_AA	NMRK1	chr9	-	chr9:77692120-77692405	chr9:77692124-77692405		chr9:77692120-77692123	chr9:77692119-77692120		100.00	100.00	100.00	NA	100.00	93.33	100.00	100.00	100.00	NA	100.00	100.00	97.06	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	TIAL1	chr10	-	chr10:121335304-121336122				chr10:121335303-121335304;chr10:121336122-121336123		0.00	0.00	1.61	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.99	0.00	1.23	0.00	7.69	4.17	1.32	1.85	1.12	0.00	2.63	2.41	1.87	0.00	0.00	0.00	0.53	0.00	-0.53	0.566337	1.000000
K	intron_retention	CTD-2647L4.5	chr8	+	chr8:28925094-28925684				chr8:28925093-28925094;chr8:28925684-28925685		100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	cassette	ANXA6	chr5	-	chr5:150489408-150496687	chr5:150489408-150490187;chr5:150490206-150496687		chr5:150490188-150490205			77.52	76.13	78.26	72.22	78.30	77.42	81.40	80.25	81.97	88.24	86.67	89.00	82.71	80.00	78.20	85.92	88.31	88.81	69.30	70.94	64.65	73.33	73.23	69.33	86.23	78.70	72.55	78.67	75.12	82.81	68.69	53.68	65.47	77.42	75.98	73.98	78.77	78.11	-0.66	0.830817	0.942757
N	alternative_donor	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295843-71297631;chr2:71295972-71297631;chr2:71295467-71297631;chr2:71295803-71297631	chr2:71296918-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		15.15	10.00	29.41	NA	NA	NA	2.33	2.88	2.94	0.00	1.39	2.44	1.52	2.08	4.17	2.86	1.96	2.78	5.56	9.30	0.00	9.09	8.82	11.11	22.22	11.11	14.29	7.14	4.76	3.33	8.33	10.53	5.56	16.67	21.05	12.00	5.56	8.82	3.26	0.942467	0.984606
K	alternative_donor	TMEM205	chr19	-	chr19:11456305-11456802;chr19:11456305-11456883	chr19:11456305-11456683		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		3.23	10.64	11.63	4.55	10.71	4.35	2.38	0.00	1.64	8.33	6.90	7.41	3.33	5.88	5.45	3.57	0.00	6.67	3.70	3.45	3.90	7.41	4.65	9.09	4.76	6.67	7.89	0.00	6.52	5.26	4.17	7.25	8.33	4.00	9.09	6.25	4.23	3.81	-0.42	0.346388	0.650093
N	jcn_only_AA	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61135723;chr11:61135471-61136068;chr11:61135471-61136243	chr11:61135471-61136071		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	2.08	0.78	1.06	0.00	5.71	0.00	0.00	1.75	3.23	0.00	0.00	4.08	0.00	0.00	1.90	0.00	NA	3.70	0.00	0.00	1.15	0.00	2.00	3.95	0.00	0.00	1.74	0.00	0.00	1.00	1.00	0.878672	0.953571
K	intron_retention		chr3	+	chr3:52283080-52283189				chr3:52283079-52283080;chr3:52283189-52283190		7.32	0.00	7.84	NA	3.23	NA	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	NA	0.00	7.14	4.55	NA	7.35	NA	0.00	0.00	13.64	5.88	4.65	NA	0.00	9.76	0.00	0.00	7.58	NA	0.00	0.00	0.00	0.365710	1.000000
N	alternative_donor	LACTB	chr15	+	chr15:63421850-63433478	chr15:63433279-63433478		chr15:63421850-63433278	chr15:63421849-63421850		4.55	6.45	6.12	1.82	1.49	4.88	0.89	2.13	2.44	2.22	1.94	2.02	2.44	1.79	4.50	2.59	3.09	2.65	4.55	4.65	3.64	1.87	1.55	2.05	10.00	3.88	4.35	1.98	2.08	1.67	3.85	4.39	6.45	3.14	2.38	2.61	5.50	3.87	-1.63	0.284552	0.650093
K	intron_retention		chr15	-	chr15:90774740-90775450				chr15:90774739-90774740;chr15:90775450-90775451		4.62	5.29	5.07	1.41	2.72	1.33	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	2.11	0.00	0.55	0.00	3.48	5.15	2.87	2.86	4.14	2.94	4.92	5.36	4.37	4.41	3.03	2.17	6.00	7.75	4.61	2.33	4.42	3.70	4.04	4.88	0.84	0.850780	1.000000
K	cassette	CHTOP	chr1	+	chr1:153614906-153617539	chr1:153614906-153615702;chr1:153615841-153617539		chr1:153615703-153615840			100.00	98.36	100.00	100.00	97.73	97.44	100.00	100.00	100.00	91.84	97.67	97.50	100.00	100.00	93.94	100.00	97.37	100.00	91.67	94.12	95.45	96.00	100.00	96.15	100.00	97.37	96.00	100.00	97.50	96.23	81.08	88.24	90.70	92.00	100.00	90.70	99.18	98.69	-0.50	0.708772	0.895394
N	jcn_only_AD	MYL6	chr12	+	chr12:56548977-56553406;chr12:56548949-56553406	chr12:56552496-56553406		chr12:56548949-56548976;chr12:56548977-56552495	chr12:56548948-56548949;chr12:56548976-56548977		100.00	100.00	100.00	95.65	96.43	100.00	98.36	100.00	100.00	98.08	95.00	90.16	100.00	100.00	100.00	100.00	95.65	96.61	100.00	100.00	98.92	100.00	100.00	100.00	100.00	100.00	100.00	96.88	97.50	100.00	100.00	100.00	97.59	95.65	96.15	98.41	100.00	100.00	0.00	0.184200	0.657607
N	alternative_acceptor	UBA7	chr3	-	chr3:49848889-49849302	chr3:49848903-49849302		chr3:49848889-49848902	chr3:49848888-49848889		7.89	18.18	23.08	NA	NA	NA	4.00	5.17	4.35	NA	NA	9.09	8.82	4.35	8.00	NA	NA	NA	NA	8.11	NA	NA	NA	7.14	0.00	13.11	NA	NA	NA	23.81	7.69	0.00	NA	NA	NA	15.38	6.41	7.79	1.38	0.994563	0.998086
N	alternative_acceptor	GAS7	chr17	-	chr17:9820655-9821317	chr17:9820659-9821317		chr17:9820655-9820658	chr17:9820654-9820655		100.00	93.22	97.30	NA	100.00	100.00	97.32	100.00	100.00	100.00	98.26	97.86	99.16	96.25	100.00	96.94	97.34	96.40	100.00	97.73	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	95.83	100.00	96.97	100.00	95.45	96.67	97.14	100.00	98.24	97.35	-0.89	0.792307	0.923384
K	alternative_first_exon	CTD-2574D22.6,MVP	chr16	+	chr16:29832713-29841794;chr16:29831832-29841794;chr16:29831224-29841794	chr16:29837414-29841794	chr16:29831715-29831831;chr16:29830876-29831223	chr16:29837263-29837413			0.00	3.70	3.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	5.26	0.00	0.00	NA	0.00	5.88	0.00	3.12	0.00	5.56	0.00	7.69	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.401803	0.558757
K	intron_retention	SUPT5H	chr19	+	chr19:39948946-39949457				chr19:39948945-39948946;chr19:39949457-39949458		0.00	0.00	5.26	NA	NA	NA	0.00	0.00	1.20	0.00	1.72	0.00	0.00	0.00	0.98	0.00	0.00	0.00	NA	1.64	0.00	4.35	1.59	3.33	14.29	7.32	5.88	3.45	3.23	5.00	0.00	7.04	NA	5.45	2.13	5.97	0.00	0.00	0.00	0.732549	1.000000
N	alternative_donor	DNAJB12,RHOBTB1	chr10	-	chr10:74104886-74114522	chr10:74104886-74110416		chr10:74110417-74114522	chr10:74114522-74114523		0.00	9.09	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.33	2.27	2.13	3.57	0.00	-3.57	0.186252	0.563271
K	intron_retention	MCOLN1	chr19	+	chr19:7593590-7593706				chr19:7593589-7593590;chr19:7593706-7593707		6.82	8.33	3.33	NA	14.29	NA	0.00	0.00	0.00	2.17	2.47	0.00	0.70	0.00	0.00	0.00	0.00	0.00	14.81	3.03	0.00	12.50	18.42	0.00	22.73	7.41	0.00	0.00	5.13	0.00	12.50	13.04	24.00	3.12	8.57	3.70	11.57	4.92	-6.65	0.373967	1.000000
N	alternative_donor	CSNK1A1	chr5	-	chr5:148876424-148885009;chr5:148876424-148884243;chr5:148876424-148878532	chr5:148876424-148885045		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		56.67	44.12	47.11	55.88	53.57	54.55	60.00	59.29	57.36	52.00	51.56	57.30	63.16	56.86	57.41	47.75	47.97	44.44	59.09	51.39	55.26	44.83	58.76	54.67	30.00	58.42	53.68	45.28	55.68	57.14	44.44	42.42	70.59	52.42	54.95	52.99	59.55	56.77	-2.78	0.997822	0.998489
N	jcn_only_AA		chr20	+	chr20:61441918-61442714;chr20:61441918-61442799;chr20:61441918-61442719	chr20:61441918-61442813		chr20:61442715-61442719;chr20:61442720-61442799;chr20:61442800-61442813	chr20:61442719-61442720;chr20:61442799-61442800;chr20:61442813-61442814		98.87	100.00	97.14	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.16	100.00	99.19	100.00	100.00	96.97	99.44	95.00	95.12	97.18	99.17	91.80	100.00	100.00	99.05	98.44	99.47	97.75	98.53	93.48	100.00	94.44	100.00	98.48	99.30	0.81	0.210684	0.663989
K	intron_retention		chr5	+	chr5:135382185-135382539				chr5:135382184-135382185;chr5:135382539-135382540		4.22	3.85	8.82	4.17	18.90	6.67	1.00	1.14	1.82	0.56	3.18	0.08	1.98	2.02	2.70	1.79	4.06	0.14	5.95	4.43	5.52	2.81	17.99	0.70	3.85	6.23	7.33	12.78	26.53	1.64	2.61	7.88	4.44	11.26	13.85	1.50	3.85	3.42	-0.44	0.971624	1.000000
K	alternative_donor	LENG8	chr19	+	chr19:54960923-54962466;chr19:54960485-54962466	chr19:54960489-54962466		chr19:54960485-54960488;chr19:54960489-54960922	chr19:54960484-54960485;chr19:54960488-54960489		30.00	0.00	22.50	NA	NA	NA	22.22	28.57	20.00	NA	26.32	NA	13.04	14.29	13.89	11.11	17.39	NA	NA	26.32	NA	NA	20.00	15.38	20.83	21.05	23.81	NA	14.29	NA	NA	20.83	NA	16.67	25.00	17.39	16.93	26.32	9.39	0.148995	0.563084
K	jcn_only_AD	SSBP1	chr7	+	chr7:141438394-141438923;chr7:141438211-141438923	chr7:141438304-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		25.00	32.43	13.16	23.81	35.48	21.43	17.31	17.65	35.71	18.75	17.74	12.82	9.68	17.39	28.89	18.58	13.04	20.00	24.14	19.23	32.56	27.03	28.00	17.24	NA	30.77	21.88	19.23	23.60	25.68	30.77	24.14	24.14	26.09	34.62	20.97	24.14	22.12	-2.02	0.686953	0.841011
N	mutually_exclusive	HEXDC	chr17	+	chr17:80398952-80399696,chr17:80399766-80400052	chr17:80398952-80399040,chr17:80399143-80400052	chr17:80399697-80399765	chr17:80399041-80399142			0.00	0.00	NA	NA	5.56	0.00	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	10.00	8.33	7.14	NA	NA	NA	6.45	12.50	7.69	NA	10.00	0.00	12.50	7.69	5.26	NA	NA	NA	5.86	10.41	4.56	0.453987	0.545364
K	intron_retention	ABCC3	chr17	+	chr17:48741220-48741310				chr17:48741219-48741220;chr17:48741310-48741311		10.34	10.42	11.27	10.00	8.11	NA	0.00	8.33	0.00	0.00	0.00	0.00	3.70	NA	0.00	0.00	0.00	NA	6.06	11.76	10.53	5.88	14.00	6.45	13.79	8.33	9.30	NA	11.76	NA	0.00	6.00	0.00	13.64	17.14	4.00	4.88	8.33	3.45	0.902226	1.000000
K	cassette	OS9	chr12	+	chr12:58112966-58114188	chr12:58112966-58113881;chr12:58114047-58114188		chr12:58113882-58114046			39.24	37.05	39.50	36.08	33.50	38.40	60.98	61.66	69.74	57.76	56.75	61.76	56.04	55.33	59.45	46.71	54.96	50.47	34.44	41.92	47.29	33.74	29.82	34.12	42.36	53.39	47.21	52.77	47.16	51.01	48.69	46.15	32.15	38.19	35.77	41.12	39.70	51.04	11.34	0.327123	0.709176
K	cassette	CYTH4	chr22	+	chr22:37699444-37705252	chr22:37699444-37700212;chr22:37700328-37705252		chr22:37700213-37700327			4.31	1.54	4.60	NA	12.12	NA	2.37	2.88	3.12	2.82	2.30	1.86	1.75	3.70	3.72	4.49	1.88	1.52	16.67	5.88	9.62	9.68	6.78	7.55	9.62	4.80	5.54	6.86	5.95	5.88	5.13	7.09	12.50	5.45	7.32	6.47	5.99	4.55	-1.44	0.316085	0.709176
K	intron_retention		chr19	+	chr19:17313693-17313955				chr19:17313692-17313693;chr19:17313955-17313956		7.62	6.33	6.86	0.00	4.76	NA	1.77	4.05	1.49	0.87	2.37	0.00	4.73	3.70	5.05	2.65	1.93	0.00	6.25	8.43	4.17	5.36	7.89	4.20	8.11	9.17	6.90	5.10	6.41	1.56	7.14	4.82	11.54	6.13	5.39	3.72	6.29	7.38	1.09	0.870555	1.000000
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3669285-3669801;chr20:3668605-3669801	chr20:3669267-3669801		chr20:3668605-3669266;chr20:3669267-3669284	chr20:3668604-3668605;chr20:3669266-3669267		97.39	95.56	94.52	95.45	96.83	96.69	99.71	99.03	99.10	99.12	99.12	98.17	99.38	98.80	99.13	98.11	99.54	99.45	95.65	97.64	97.94	93.75	95.40	97.38	95.80	97.88	97.52	97.31	98.39	98.22	97.97	98.01	95.56	96.04	96.92	96.04	95.72	97.92	2.20	0.223705	0.676733
K	cassette	TSR3	chr16	-	chr16:1399610-1400058	chr16:1399610-1399889;chr16:1399954-1400058		chr16:1399890-1399953			86.49	83.54	92.50	86.36	86.84	92.96	97.44	76.92	94.74	96.67	100.00	NA	100.00	94.74	97.96	92.50	95.24	NA	91.50	90.00	91.51	82.76	86.00	93.75	94.12	93.75	90.91	91.67	93.62	88.89	92.86	88.89	88.08	92.59	84.85	91.30	92.81	91.43	-1.38	0.389127	0.709410
K	intron_retention	STAT6	chr12	-	chr12:57499383-57499973				chr12:57499382-57499383;chr12:57499973-57499974		6.25	30.43	19.70	NA	9.09	NA	2.11	1.37	3.51	0.00	2.86	0.00	1.85	2.11	7.61	1.35	2.38	0.00	NA	12.07	18.18	9.09	12.77	14.63	27.27	10.96	15.56	12.50	10.71	17.65	10.00	18.92	NA	12.50	15.62	16.00	14.69	8.12	-6.56	0.696434	1.000000
K	intron_retention	ZFYVE19	chr15	+	chr15:41102956-41104896				chr15:41102955-41102956;chr15:41104896-41104897		0.00	21.43	20.83	NA	18.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	5.41	0.00	5.41	NA	6.25	NA	13.04	0.00	13.04	9.09	6.90	NA	8.33	4.76	17.50	0.00	7.14	NA	9.22	0.00	-9.22	0.455053	1.000000
K	jcn_only_AD	EIF2AK1,TMUB1	chr7	-	chr7:6064433-6066358	chr7:6064433-6066065		chr7:6066066-6066358	chr7:6066358-6066359		0.00	0.00	3.08	NA	0.00	NA	1.35	9.09	0.00	2.44	1.28	0.00	2.60	13.33	4.23	2.38	3.66	7.69	0.00	7.41	0.00	0.00	0.00	0.00	NA	10.26	3.70	4.35	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	8.25	8.25	0.014788	0.285693
K	intron_retention	PPIF	chr10	+	chr10:81107500-81108831				chr10:81107499-81107500;chr10:81108831-81108832		10.00	8.00	4.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	1.13	1.31	1.09	0.00	0.00	0.65	0.00	0.00	0.00	7.92	4.68	10.00	2.57	2.44	0.00	0.00	1.04	1.04	0.744816	1.000000
N	cassette	RPS6KB2	chr11	+	chr11:67200514-67200810	chr11:67200514-67200596;chr11:67200688-67200810		chr11:67200597-67200687			100.00	93.22	100.00	100.00	91.67	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	87.50	100.00	100.00	100.00	97.22	100.00	2.78	0.287566	0.709176
K	jcn_only_AD	S100A10,SNRNP40	chr1	-	chr1:31732969-31734375	chr1:31732969-31733801		chr1:31733802-31734375	chr1:31734375-31734376		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	NA	2.63	NA	0.00	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
N	jcn_only_AA	CPQ	chr8	+	chr8:98078439-98155247;chr8:98078439-98118133	chr8:98078439-98120759		chr8:98118134-98120759;chr8:98120760-98155247	chr8:98120759-98120760;chr8:98155247-98155248		0.00	0.00	0.00	0.00	1.67	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	XIAP	chrX	+	chrX:123046867-123047094				chrX:123046866-123046867;chrX:123047094-123047095		100.00	100.00	100.00	100.00	91.30	75.00	87.50	100.00	100.00	82.76	87.50	84.00	100.00	94.12	100.00	86.96	68.42	85.00	83.33	100.00	89.47	88.00	93.55	96.00	NA	100.00	93.10	93.10	84.38	100.00	100.00	91.30	91.67	91.18	83.33	93.48	91.67	100.00	8.33	0.231090	1.000000
K	alternative_acceptor	ZBTB8OS	chr1	-	chr1:33099674-33100368	chr1:33099712-33100368		chr1:33099674-33099711	chr1:33099673-33099674		16.67	2.56	15.38	21.05	17.31	16.00	15.79	20.00	17.24	13.64	14.29	6.90	10.53	20.00	17.95	6.06	13.24	9.68	14.71	30.00	17.95	25.00	18.60	11.76	19.23	28.57	23.33	10.00	17.02	17.86	25.00	20.00	28.00	21.74	18.18	11.11	15.25	22.50	7.25	0.077575	0.585944
N	jcn_only_AA	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479388	chr10:45478112-45479317		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		1.60	0.00	2.34	NA	NA	NA	0.74	2.09	2.25	3.82	1.22	2.63	0.00	1.27	2.47	1.83	2.44	1.56	NA	1.89	2.33	0.00	0.00	5.26	0.00	1.80	2.76	1.30	2.78	3.01	0.00	4.35	0.00	0.00	0.00	2.24	0.00	1.70	1.70	0.006874	0.450187
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648780-75648946;chr15:75648815-75648946	chr15:75648791-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		77.27	84.75	73.68	89.58	85.87	74.32	90.00	100.00	100.00	80.00	92.86	93.33	89.74	NA	95.65	94.44	93.62	95.45	75.63	79.17	89.83	83.33	83.56	88.24	85.51	82.35	88.24	79.31	83.33	86.67	78.79	78.43	78.57	86.67	78.00	81.54	85.13	79.17	-5.96	0.918034	0.971566
K	intron_retention		chr6	+	chr6:36995352-36995723				chr6:36995351-36995352;chr6:36995723-36995724		3.87	3.92	NA	NA	0.00	NA	3.23	1.39	0.00	NA	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	3.81	NA	NA	0.00	9.38	0.00	3.55	NA	6.06	0.00	1.45	1.35	0.00	3.70	8.00	5.88	3.17	1.61	2.47	0.85	0.918632	1.000000
N	alternative_first_exon	AC002398.9,LIN37	chr19	+	chr19:36237425-36243076;chr19:36236893-36243076	chr19:36239660-36243076	chr19:36237320-36237424;chr19:36236736-36236892	chr19:36239262-36239659			95.65	86.36	86.21	100.00	88.24	NA	100.00	100.00	100.00	100.00	100.00	91.67	100.00	93.33	100.00	100.00	NA	100.00	90.00	92.86	94.74	90.91	85.71	91.67	71.43	96.30	89.66	100.00	100.00	93.75	95.45	92.86	80.00	93.33	94.44	95.00	88.18	95.55	7.37	0.160638	0.357419
K	alternative_acceptor	HMG20B	chr19	+	chr19:3573799-3574380;chr19:3573799-3574338;chr19:3573799-3573900	chr19:3573799-3574367		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		11.43	3.57	8.57	11.76	3.45	NA	2.70	7.14	2.38	1.72	1.54	0.00	1.43	0.00	4.55	0.00	2.94	0.00	10.53	4.17	3.57	9.52	8.93	5.56	2.78	4.55	4.55	3.85	2.08	0.00	6.52	9.43	4.76	15.79	3.45	5.41	3.17	5.54	2.36	0.525663	0.808638
N	jcn_only_AD	ANAPC13	chr3	-	chr3:134201774-134202097;chr3:134201774-134204793;chr3:134201774-134204542;chr3:134201774-134204161	chr3:134201774-134204157		chr3:134202098-134204157;chr3:134204158-134204161;chr3:134204162-134204542;chr3:134204543-134204793	chr3:134204157-134204158;chr3:134204161-134204162;chr3:134204542-134204543;chr3:134204793-134204794		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	NADSYN1	chr11	+	chr11:71209575-71212347	chr11:71210086-71212347		chr11:71209575-71210085	chr11:71209574-71209575		0.00	1.27	5.45	1.14	1.32	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.53	2.13	0.99	2.27	0.37	3.70	1.37	2.00	0.00	1.61	0.00	3.23	0.87	2.00	0.00	1.89	0.62	0.00	-0.62	0.939393	0.984606
N	alternative_donor	RNF31,RP11-468E2.4	chr14	+	chr14:24620880-24620994	chr14:24620893-24620994		chr14:24620880-24620892	chr14:24620879-24620880		0.00	0.00	1.82	NA	0.00	NA	4.76	0.00	0.00	0.00	0.00	3.57	0.00	0.00	2.94	0.00	0.00	0.00	NA	1.85	0.00	0.00	0.00	8.33	9.09	1.89	0.00	0.00	NA	0.00	6.82	3.80	0.00	5.41	4.35	3.08	0.00	0.93	0.93	0.649648	0.842403
K	jcn_only_AD	PSMC3	chr11	-	chr11:47447502-47447683;chr11:47447502-47447755	chr11:47447502-47447667		chr11:47447668-47447683;chr11:47447684-47447755	chr11:47447683-47447684;chr11:47447755-47447756		0.00	0.00	2.38	NA	0.00	NA	0.00	1.96	0.00	1.20	1.19	0.00	0.00	3.51	1.54	1.67	0.00	0.00	3.33	4.55	1.82	0.00	3.23	2.94	0.00	4.76	2.70	0.00	0.00	0.00	3.64	4.55	0.00	5.00	0.00	2.13	0.00	3.58	3.58	0.022565	0.350473
K	alternative_donor	RUFY1	chr5	+	chr5:179032926-179034582	chr5:179034487-179034582		chr5:179032926-179034486	chr5:179032925-179032926		3.64	2.50	4.40	2.22	1.03	0.00	0.00	0.00	3.12	2.13	0.00	0.00	1.92	3.57	4.17	2.56	1.49	0.00	0.00	4.26	2.82	6.25	2.97	6.12	0.00	5.41	3.23	6.06	1.08	1.72	4.44	5.56	1.19	5.19	6.90	7.75	0.59	3.95	3.36	0.017826	0.264212
N	cassette	MPZL1	chr1	+	chr1:167742606-167757056;chr1:167734987-167757056	chr1:167742606-167745300,chr1:167734987-167745300;chr1:167745404-167757056		chr1:167745301-167745403			54.37	75.00	55.65	64.62	58.82	61.64	51.35	62.82	52.49	52.31	43.18	58.74	43.48	74.07	43.72	43.75	35.00	47.70	62.50	61.64	55.46	67.82	64.71	61.78	NA	70.42	54.07	62.50	NA	68.64	72.39	63.85	52.38	61.29	52.17	58.01	52.38	66.62	14.24	0.196450	0.709176
N	jcn_only_AA	MITD1	chr2	-	chr2:99784176-99786012;chr2:99785896-99786012;chr2:99778132-99786012;chr2:99784311-99786012	chr2:99785934-99786012		chr2:99778132-99784175;chr2:99784176-99784310;chr2:99784311-99785895;chr2:99785896-99785933	chr2:99778131-99778132;chr2:99784175-99784176;chr2:99784310-99784311;chr2:99785895-99785896		87.50	96.49	96.23	89.47	91.67	88.89	85.71	95.45	90.48	91.67	92.31	NA	90.91	86.96	93.33	NA	84.00	NA	89.53	91.30	90.16	93.75	95.00	83.33	100.00	84.62	90.38	95.00	100.00	95.45	86.36	84.85	91.67	95.65	92.31	91.89	91.29	87.23	-4.06	0.194620	0.663989
N	jcn_only_AA	SLC16A3	chr17	+	chr17:80195770-80196577;chr17:80195770-80196686	chr17:80195770-80218774		chr17:80196578-80196686;chr17:80196687-80218774	chr17:80196686-80196687;chr17:80218774-80218775		5.17	10.14	6.83	4.80	4.41	8.62	0.00	0.00	1.01	0.43	0.00	2.56	0.00	0.00	0.22	0.60	0.00	4.00	4.03	1.51	3.70	1.19	2.68	7.02	4.97	1.69	1.63	0.67	0.69	1.77	5.43	6.19	9.07	1.69	2.01	5.84	4.50	1.60	-2.90	0.270113	0.663989
K	cassette	PHPT1	chr9	+	chr9:139744590-139745206	chr9:139744590-139744957;chr9:139745013-139745206		chr9:139744958-139745012			8.70	2.72	2.00	2.63	2.42	1.34	3.33	5.00	1.61	1.59	3.52	2.63	3.28	4.35	6.85	3.74	3.28	4.11	2.48	3.77	2.63	2.53	1.65	3.00	3.33	7.14	8.00	1.41	2.94	1.98	4.82	3.15	2.70	1.90	1.78	2.64	3.00	4.91	1.91	0.017523	0.373030
K	alternative_donor	UQCR10	chr22	+	chr22:30163538-30165666	chr22:30163597-30165666		chr22:30163538-30163596	chr22:30163537-30163538		5.19	6.03	8.10	5.52	6.24	6.50	7.69	6.86	6.21	7.76	7.11	4.23	7.54	9.47	12.50	8.26	9.19	9.23	6.65	4.96	9.02	9.71	7.06	5.66	8.94	7.55	7.08	6.67	6.34	7.86	6.15	5.64	6.68	5.49	6.67	5.86	7.11	6.51	-0.60	0.505773	0.759420
N	jcn_only_AD	AHCY	chr20	-	chr20:32883392-32891048;chr20:32883392-32889563	chr20:32883392-32887352		chr20:32887353-32889563;chr20:32889564-32891048	chr20:32889563-32889564;chr20:32891048-32891049		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	alternative_acceptor	BUD31,EPHA1-AS1	chr7	+	chr7:99006628-99007659	chr7:99006628-99007656		chr7:99007657-99007659	chr7:99007659-99007660		86.49	74.19	93.75	94.44	84.00	100.00	94.74	100.00	82.61	84.00	91.30	88.24	81.48	90.91	100.00	87.88	91.67	94.12	84.00	91.30	95.24	100.00	86.67	90.00	100.00	88.89	100.00	94.12	100.00	90.00	100.00	88.00	90.48	94.74	90.00	100.00	87.24	91.10	3.86	0.259424	0.709013
K	jcn_only_AD	STUB1	chr16	+	chr16:731881-732019	chr16:731904-732019		chr16:731881-731903	chr16:731880-731881		3.77	1.92	3.28	3.23	4.72	3.16	2.13	3.45	2.22	0.00	2.67	0.00	1.20	0.00	1.96	2.63	0.00	3.85	2.23	4.55	3.05	5.26	1.85	3.23	2.70	4.88	0.00	5.41	0.00	4.26	3.57	3.57	3.40	0.00	2.67	0.00	2.18	3.67	1.49	0.197546	0.657607
K	jcn_only_AD	PLEC	chr8	-	chr8:145009098-145009190	chr8:145009098-145009178		chr8:145009179-145009190	chr8:145009190-145009191		54.17	53.33	67.74	NA	NA	NA	64.10	70.45	73.08	77.05	63.64	56.52	68.10	66.67	80.00	71.25	68.02	61.54	58.33	52.94	NA	54.55	68.29	58.82	63.08	70.59	66.67	69.23	58.06	NA	NA	61.54	62.50	83.33	52.27	61.90	62.79	66.67	3.88	0.763964	0.878499
K	jcn_only_AA	SYNGR2	chr17	+	chr17:76167136-76167819	chr17:76167136-76167590		chr17:76167591-76167819	chr17:76167819-76167820		87.10	86.85	88.60	83.33	83.43	68.75	93.37	94.15	94.04	84.51	88.40	85.88	94.36	95.18	92.50	89.74	86.76	85.62	84.42	88.31	88.66	78.22	83.38	82.35	87.72	93.67	87.69	84.44	87.75	86.52	89.93	88.02	78.57	85.89	82.39	85.55	87.28	91.80	4.52	0.201293	0.663989
N	jcn_only_AA	LY86	chr6	+	chr6:6589104-6625158	chr6:6589104-6619305		chr6:6619306-6625158	chr6:6625158-6625159		0.00	0.00	NA	0.00	0.00	0.00	2.02	0.00	0.00	1.80	2.76	2.92	1.28	0.00	0.00	1.26	4.22	0.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	3.03	1.80	3.66	0.00	0.00	5.26	2.63	2.22	0.00	0.64	0.00	-0.64	0.225467	0.663989
K	alternative_donor	PARK7	chr1	+	chr1:8021796-8022822	chr1:8021854-8022822		chr1:8021796-8021853	chr1:8021795-8021796		54.55	50.00	35.00	35.00	38.10	37.50	26.62	32.00	28.24	20.62	21.85	18.99	32.50	40.00	36.59	26.17	27.08	24.66	33.33	25.00	26.39	28.85	34.38	40.00	40.00	40.00	44.23	30.43	28.57	29.17	47.62	34.62	41.03	40.48	37.10	34.43	36.66	40.00	3.34	0.642848	0.839741
K	intron_retention	PIH1D1	chr19	-	chr19:49952912-49954038				chr19:49952911-49952912;chr19:49954038-49954039		3.57	1.20	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	5.88	0.00	0.00	0.00	0.00	0.00	0.00	1.82	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.548799	1.000000
K	intron_retention	HTRA2	chr2	+	chr2:74759842-74759946				chr2:74759841-74759842;chr2:74759946-74759947		4.55	4.44	0.00	0.00	8.82	0.00	4.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.67	6.25	NA	8.33	0.00	2.63	NA	8.33	NA	0.00	NA	3.12	15.38	11.76	0.00	8.33	4.17	7.14	16.67	10.00	0.00	4.22	0.00	-4.22	0.895971	1.000000
N	jcn_only_AA	SMCO4	chr11	-	chr11:93212451-93232441;chr11:93212670-93232441;chr11:93214715-93232441	chr11:93212436-93232441		chr11:93212436-93212450;chr11:93212451-93212669;chr11:93212670-93214714	chr11:93212435-93212436;chr11:93212450-93212451;chr11:93212669-93212670		88.16	100.00	90.79	81.25	90.00	79.66	85.11	80.39	82.56	83.12	86.54	76.15	87.10	84.88	76.67	74.55	91.43	80.00	87.50	88.54	80.36	82.69	85.71	79.53	100.00	82.56	86.46	74.42	72.73	65.49	90.00	89.92	100.00	90.91	90.00	84.17	93.75	86.52	-7.23	0.059653	0.663989
K	intron_retention		chr1	-	chr1:52823371-52823452				chr1:52823370-52823371;chr1:52823452-52823453		1.59	0.00	6.82	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.08	0.00	0.00	11.11	7.69	0.00	3.08	2.13	0.00	0.00	0.00	6.00	1.89	NA	7.50	2.22	4.00	0.00	2.33	2.33	0.131360	1.000000
N	jcn_only_AA		chr7	+	chr7:150768693-150768783	chr7:150768693-150768775		chr7:150768776-150768783	chr7:150768783-150768784		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.78	95.65	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	89.83	96.05	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.268910	0.663989
K	intron_retention		chr17	-	chr17:30200773-30202252				chr17:30200772-30200773;chr17:30202252-30202253		3.23	6.90	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	3.57	2.17	0.00	0.00	0.00	3.33	0.00	0.00	3.70	0.00	6.25	7.69	5.56	0.00	5.88	3.47	0.00	-3.47	0.463815	1.000000
K	jcn_only_AD	ZFAND2B	chr2	+	chr2:220072497-220072608	chr2:220072502-220072608		chr2:220072497-220072501	chr2:220072496-220072497		100.00	100.00	96.15	NA	100.00	NA	90.91	NA	84.62	93.33	100.00	NA	96.00	100.00	100.00	NA	96.43	NA	96.55	100.00	90.48	NA	95.24	NA	100.00	NA	85.71	NA	100.00	NA	100.00	100.00	93.55	87.50	100.00	80.00	96.28	100.00	3.72	0.046957	0.500386
K	cassette	HNRNPD	chr4	-	chr4:83275308-83276456	chr4:83275308-83276047;chr4:83276155-83276456		chr4:83276048-83276154			9.00	4.39	10.53	8.11	5.73	10.67	0.79	2.22	0.87	2.00	0.70	0.00	0.57	1.20	0.69	1.54	0.71	1.33	5.85	12.66	6.25	9.90	4.74	6.86	6.84	11.39	7.75	5.22	3.17	5.49	18.67	21.84	8.92	11.93	6.60	14.17	5.12	10.20	5.08	0.167925	0.709176
K	coord_cassette	WBSCR22	chr7	+	chr7:73098135-73105245	chr7:73098135-73100965;chr7:73101062-73101147;chr7:73101231-73101328;chr7:73101426-73105245		chr7:73100966-73101061;chr7:73101148-73101230;chr7:73101329-73101425			100.00	97.50	100.00	100.00	100.00	NA	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	NA	96.55	100.00	97.44	100.00	92.86	100.00	100.00	100.00	96.97	100.00	100.00	100.00	0.00	0.235929	0.643829
N	alternative_donor	MLEC	chr12	+	chr12:121125512-121131893;chr12:121125335-121131893	chr12:121130932-121131893		chr12:121125335-121125511;chr12:121125512-121130931	chr12:121125334-121125335;chr12:121125511-121125512		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	1.11	0.00	0.53	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	7.69	3.85	0.00	0.00	0.00	0.363217	0.650093
K	alternative_first_exon	PDCD5	chr19	+	chr19:33072234-33073100	chr19:33072607-33073100	chr19:33071974-33072233	chr19:33072432-33072606			16.67	20.00	14.71	12.12	18.75	6.25	15.79	15.79	13.24	18.31	12.28	14.29	11.67	9.68	11.22	14.29	12.68	15.00	17.65	15.79	13.46	11.63	15.56	14.29	0.00	0.00	11.43	13.21	7.89	10.87	19.05	23.53	13.79	20.00	22.81	21.43	14.79	15.79	1.00	0.938772	0.960353
K	intron_retention		chr1	-	chr1:154180125-154184795				chr1:154180124-154180125;chr1:154184795-154184796		1.49	4.94	0.98	2.33	0.00	11.76	0.00	0.00	0.42	0.40	0.33	0.00	0.43	0.00	0.83	0.90	0.00	0.56	5.71	0.00	1.45	0.00	0.47	1.19	14.29	0.82	0.00	0.00	0.54	0.83	2.75	1.02	4.08	1.12	1.02	1.04	4.51	0.41	-4.10	0.943115	1.000000
K	alternative_acceptor	SUMO1	chr2	-	chr2:203075507-203079079	chr2:203075530-203079079		chr2:203075507-203075529	chr2:203075506-203075507		70.13	87.50	86.11	73.33	82.93	NA	78.46	76.92	82.86	52.04	55.08	59.46	75.00	84.85	83.08	82.98	50.83	52.78	85.71	77.78	84.38	78.38	76.00	80.00	NA	75.00	82.81	70.59	87.27	73.53	87.18	81.82	87.50	84.75	82.14	80.52	85.71	77.35	-8.36	0.280649	0.709013
K	alternative_first_exon	KIAA0930	chr22	-	chr22:45607989-45609201,chr22:45607989-45631129,chr22:45607989-45632050,chr22:45607989-45632893,chr22:45607989-45633036,chr22:45607989-45635092,chr22:45607989-45642380;chr22:45607989-45622032;chr22:45607989-45608145	chr22:45607989-45636520	chr22:45622033-45622264;chr22:45608146-45608369	chr22:45636521-45636650			91.67	92.86	96.30	NA	76.00	NA	85.50	100.00	95.83	91.04	78.84	92.59	87.64	88.68	94.74	91.86	90.54	90.91	91.67	95.45	NA	96.97	85.25	89.29	58.33	81.82	90.48	94.12	79.49	NA	85.71	83.33	80.00	89.29	80.90	86.21	86.57	90.18	3.61	0.218517	0.424823
N	cassette	MANBA	chr4	-	chr4:103556031-103560869;chr4:103556203-103560869	chr4:103556031-103557021,chr4:103556203-103557021;chr4:103557165-103560869		chr4:103557022-103557164			95.45	100.00	100.00	100.00	100.00	NA	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	96.15	100.00	100.00	96.36	100.00	100.00	100.00	100.00	87.50	100.00	100.00	90.77	93.55	100.00	97.18	96.88	100.00	100.00	96.56	-3.44	0.057203	0.600839
K	mutually_exclusive	TNFSF12-TNFSF13,TNFSF13	chr17	+	chr17:7462615-7463167,chr17:7463211-7463365	chr17:7462615-7462940,chr17:7463020-7463365	chr17:7463168-7463210	chr17:7462941-7463019			14.06	6.25	13.79	NA	16.67	NA	7.07	11.69	NA	19.44	13.85	6.52	6.20	14.55	NA	11.39	11.36	15.38	36.36	18.18	15.38	20.00	19.67	17.86	NA	10.53	15.79	35.71	12.82	15.38	33.33	NA	23.08	12.50	14.58	10.61	7.07	14.30	7.23	0.861513	0.861513
N	coord_cassette	ARHGAP17	chr16	-	chr16:24931582-24942104	chr16:24931582-24939004;chr16:24939054-24940933;chr16:24940982-24942104		chr16:24939005-24939053;chr16:24940934-24940981			0.00	0.00	2.17	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.14	2.94	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	3.33	0.00	8.33	3.92	3.51	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	2.50	0.00	1.11	1.11	0.570187	0.751088
N	cassette	MIA-RAB4B,RAB4B,RAB4B-EGLN2	chr19	+	chr19:41284297-41289682;chr19:41284297-41289825	chr19:41284297-41286289;chr19:41286405-41289825,chr19:41286405-41289682		chr19:41286290-41286404			94.87	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	96.43	100.00	NA	NA	100.00	95.35	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175330	0.709176
N	alternative_acceptor	DUSP22	chr6	+	chr6:348842-350377;chr6:348842-350802;chr6:348842-350821	chr6:348842-350568		chr6:350378-350568;chr6:350569-350802;chr6:350803-350821	chr6:350568-350569;chr6:350802-350803;chr6:350821-350822		27.78	16.28	21.88	20.83	20.93	25.53	10.53	18.18	14.81	22.86	8.33	9.30	17.14	13.64	23.94	8.00	13.64	15.38	14.29	21.74	17.46	15.38	15.79	20.45	19.23	15.79	18.87	18.18	14.29	16.67	21.43	15.91	16.22	17.86	20.83	19.64	16.25	19.80	3.55	0.119926	0.606219
N	jcn_only_AD	BIN1	chr2	-	chr2:127821595-127822176;chr2:127821595-127825738;chr2:127821595-127822125;chr2:127821595-127824271;chr2:127821595-127822349	chr2:127821595-127826499					94.74	100.00	NA	NA	96.72	NA	100.00	90.00	NA	70.59	94.74	NA	92.00	NA	NA	75.44	96.19	85.29	93.10	100.00	100.00	84.62	96.94	76.92	100.00	93.75	100.00	84.62	95.00	86.67	83.33	75.00	90.48	78.26	95.35	71.43	96.55	93.75	-2.80	0.318550	0.657607
N	cassette	KCNN4	chr19	-	chr19:44278772-44284854	chr19:44278772-44280692;chr19:44280789-44284854		chr19:44280693-44280788			75.47	100.00	88.57	91.30	80.33	75.00	95.89	98.08	87.50	92.05	94.79	89.87	92.16	90.38	100.00	92.60	94.12	92.45	NA	85.11	88.24	91.18	87.50	91.82	NA	100.00	81.08	92.02	92.11	91.22	100.00	84.21	60.00	77.19	80.28	83.72	94.03	94.23	0.20	0.675241	0.882035
K	alternative_donor	NCBP2	chr3	-	chr3:196666304-196669296	chr3:196666304-196668805		chr3:196668806-196669296	chr3:196669296-196669297		20.00	15.38	10.34	NA	12.50	NA	16.67	17.39	19.05	7.81	13.56	4.35	15.00	26.67	19.05	12.31	11.94	5.00	NA	8.33	13.33	4.76	15.62	10.00	NA	30.00	13.04	13.33	10.34	6.67	NA	21.43	8.33	20.00	13.79	14.29	15.19	20.00	4.81	0.169437	0.563271
N	alternative_donor	CIRBP	chr19	+	chr19:1272051-1272425	chr19:1272243-1272425		chr19:1272051-1272242	chr19:1272050-1272051		11.56	11.43	16.41	5.61	4.05	6.15	4.52	3.63	4.52	2.36	3.50	1.92	5.95	4.25	8.62	2.58	3.77	1.85	7.35	10.86	5.77	10.29	9.41	13.58	22.58	13.16	19.19	8.00	8.40	7.89	5.86	13.70	9.76	9.13	15.71	13.35	8.55	8.36	-0.20	0.533911	0.776740
K	intron_retention		chr8	+	chr8:144642140-144642772				chr8:144642139-144642140;chr8:144642772-144642773		11.82	14.29	18.52	16.67	11.76	9.38	8.70	5.81	7.89	17.65	5.56	14.29	10.34	17.19	18.68	28.57	11.76	9.38	18.18	40.98	19.64	NA	41.18	55.00	53.85	41.38	41.94	55.56	27.27	38.36	35.85	41.03	41.67	50.00	NA	55.56	16.23	26.52	10.29	0.977931	1.000000
K	alternative_first_exon	ARAP1,KCNJ1	chr11	-	chr11:72425367-72428513,chr11:72425367-72431203,chr11:72425367-72437669;chr11:72425367-72437664	chr11:72425367-72432894	chr11:72437665-72438217	chr11:72432895-72433403			57.53	29.41	67.88	NA	NA	NA	45.65	78.72	77.66	57.75	41.58	80.00	45.95	81.55	84.67	57.89	53.78	81.82	NA	68.82	66.67	35.71	39.68	66.67	33.33	71.83	72.57	78.12	34.21	93.75	57.14	63.64	NA	41.86	43.08	64.52	39.49	70.32	30.83	0.001104	0.016459
K	intron_retention	COPS6	chr7	+	chr7:99688111-99688214				chr7:99688110-99688111;chr7:99688214-99688215		7.69	0.00	3.28	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	1.49	4.00	0.00	0.00	2.04	0.00	1.47	0.00	10.00	13.04	4.08	7.14	4.35	4.08	0.00	0.00	0.00	0.756072	1.000000
K	intron_retention	CUTA	chr6	-	chr6:33384920-33385027				chr6:33384919-33384920;chr6:33385027-33385028		0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.71	0.00	0.82	2.86	2.11	1.96	0.00	0.00	6.06	0.00	0.00	0.00	17.65	0.00	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.636624	1.000000
K	alternative_last_exon	VRK3	chr19	-	chr19:50490191-50491628;chr19:50484271-50491628	chr19:50485446-50491628	chr19:50484212-50484270	chr19:50484911-50485445			45.45	50.00	44.00	70.00	61.36	76.79	48.00	59.26	37.50	54.17	52.00	60.00	52.94	42.86	37.04	57.14	57.69	52.94	56.10	47.22	53.66	56.25	62.50	53.33	56.10	45.95	34.78	63.64	70.00	65.79	58.33	54.29	55.00	53.57	52.00	52.63	53.97	46.59	-7.38	0.353541	0.535374
K	cassette	PSMB7	chr9	-	chr9:127146936-127174630	chr9:127146936-127167595;chr9:127167712-127174630		chr9:127167596-127167711			97.96	100.00	98.98	100.00	99.14	100.00	100.00	100.00	98.37	98.99	100.00	100.00	99.06	100.00	100.00	100.00	100.00	100.00	97.06	97.87	97.22	100.00	98.04	100.00	96.92	98.31	97.70	98.41	100.00	100.00	93.68	93.41	95.95	100.00	98.73	98.20	98.06	98.13	0.07	0.872602	0.956232
K	intron_retention		chr3	+	chr3:184026356-184026495				chr3:184026355-184026356;chr3:184026495-184026496		2.42	1.40	4.96	1.12	0.81	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.00	0.00	1.24	3.10	1.72	1.89	1.20	5.13	0.00	1.47	1.31	0.00	0.00	1.53	7.65	5.56	2.88	1.34	0.76	1.92	0.62	1.94	1.32	0.566777	1.000000
K	jcn_only_AD	RPP21,TRIM39-RPP21	chr6	+	chr6:30314335-30314489	chr6:30314342-30314489		chr6:30314335-30314341	chr6:30314334-30314335		5.00	4.65	3.70	7.41	4.82	4.41	0.00	NA	0.00	0.00	3.57	0.00	8.00	NA	10.00	16.00	3.85	10.00	3.12	0.00	5.56	6.67	7.89	0.00	10.31	18.75	0.00	5.26	9.09	8.70	5.00	8.89	3.68	0.00	3.45	0.00	4.17	5.00	0.83	0.632869	0.817595
K	intron_retention	TMEM259	chr19	-	chr19:1011612-1011739				chr19:1011611-1011612;chr19:1011739-1011740		12.12	26.67	15.79	NA	13.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	NA	18.52	13.33	23.08	26.67	31.25	NA	15.00	10.81	11.11	15.62	5.26	20.00	27.27	16.67	21.05	15.38	16.13	8.34	13.56	5.22	0.709218	1.000000
N	alternative_donor	RFX5,SSBP3	chr1	-	chr1:54707183-54707836	chr1:54707183-54707522		chr1:54707523-54707836	chr1:54707836-54707837		2.86	7.14	3.80	NA	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	NA	4.76	1.41	0.00	0.00	NA	0.00	5.26	NA	0.00	3.70	0.00	0.00	0.00	0.00	0.903262	0.979133
K	intron_retention	RP3-430N8.11	chr22	-	chr22:31372919-31374706				chr22:31372918-31372919;chr22:31374706-31374707		91.49	100.00	95.59	100.00	100.00	94.83	100.00	94.44	100.00	100.00	90.91	NA	92.00	92.00	91.67	92.31	100.00	NA	95.97	93.62	93.85	96.15	97.87	100.00	95.44	100.00	100.00	100.00	100.00	93.75	100.00	100.00	94.29	91.49	100.00	95.12	95.70	94.03	-1.67	0.562736	1.000000
K	alternative_donor	HNRNPUL1	chr19	+	chr19:41770598-41774127	chr19:41770704-41774127		chr19:41770598-41770703	chr19:41770597-41770598		85.71	90.00	86.11	NA	NA	NA	76.32	91.67	93.33	80.00	75.00	75.00	73.03	90.32	92.31	79.55	72.00	80.00	NA	85.71	NA	NA	76.00	70.00	100.00	90.00	100.00	NA	81.25	NA	NA	72.22	NA	72.22	76.47	73.68	83.16	90.00	6.84	0.585892	0.799662
N	alternative_acceptor	SETX	chr9	-	chr9:135150243-135150642;chr9:135150246-135150642	chr9:135147196-135150642		chr9:135147196-135150242;chr9:135150243-135150245	chr9:135147195-135147196;chr9:135150242-135150243		95.35	100.00	96.23	NA	100.00	NA	100.00	98.21	100.00	100.00	100.00	100.00	100.00	98.08	96.61	100.00	97.14	100.00	100.00	96.61	100.00	100.00	100.00	96.67	NA	96.43	96.88	100.00	100.00	100.00	100.00	100.00	100.00	94.44	95.35	97.44	100.00	97.34	-2.66	0.012789	0.475629
K	alternative_first_exon	GCHFR	chr15	+	chr15:41056120-41058024,chr15:41056644-41058024;chr15:41056415-41058024	chr15:41056807-41058024	chr15:41056218-41056414	chr15:41056624-41056806			0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	1.61	NA	0.00	NA	1.47	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.14	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.460014	0.605043
N	cassette	ESRRA	chr11	+	chr11:64081840-64083178;chr11:64081840-64082472	chr11:64081840-64082215;chr11:64082384-64082472,chr11:64082384-64083178		chr11:64082216-64082383			100.00	100.00	100.00	NA	94.44	NA	97.30	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.75	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	95.24	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	cassette	RGS19	chr20	-	chr20:62708000-62710646;chr20:62708000-62708462;chr20:62708000-62711225	chr20:62708000-62708209;chr20:62708308-62710646,chr20:62708308-62708462,chr20:62708308-62711225		chr20:62708210-62708307			40.38	34.29	30.43	NA	27.27	NA	86.36	68.75	71.43	NA	76.00	NA	77.46	59.57	NA	81.82	82.28	NA	NA	53.57	61.54	NA	45.10	NA	NA	46.88	33.33	NA	57.50	NA	36.84	45.00	31.25	NA	47.37	NA	55.88	50.23	-5.65	0.698286	0.889398
N	cassette	EMC2	chr8	+	chr8:109489122-109498740	chr8:109489122-109491234;chr8:109491340-109498740		chr8:109491235-109491339			92.86	100.00	100.00	100.00	100.00	100.00	97.37	91.49	95.00	100.00	100.00	100.00	100.00	91.67	100.00	97.22	100.00	91.30	100.00	95.83	95.92	100.00	100.00	96.15	100.00	89.47	100.00	93.94	94.87	92.31	94.74	98.36	96.00	100.00	100.00	100.00	100.00	92.27	-7.73	0.000486	0.070441
N	intron_retention		chr22	-	chr22:50965713-50965845				chr22:50965712-50965713;chr22:50965845-50965846		99.04	100.00	99.15	99.44	98.94	98.55	NA	95.18	96.55	100.00	100.00	88.89	93.33	96.09	98.62	94.83	91.30	88.24	100.00	100.00	98.92	100.00	100.00	97.33	100.00	98.24	99.03	98.48	100.00	97.95	96.68	98.81	99.10	99.15	100.00	99.48	100.00	97.46	-2.54	0.853046	1.000000
K	jcn_only_AD	BANF1	chr11	+	chr11:65769985-65770705	chr11:65770042-65770705		chr11:65769985-65770041	chr11:65769984-65769985		70.73	80.72	80.00	84.21	74.14	83.33	81.29	66.67	76.00	82.73	77.66	85.23	84.24	65.71	77.78	81.48	78.29	82.19	87.29	65.71	69.66	86.08	84.12	82.61	79.69	72.73	74.51	84.62	79.53	78.57	64.71	60.00	79.25	85.71	77.88	78.95	81.00	66.19	-14.81	0.000014	0.020477
N	alternative_donor		chr5	-	chr5:176314123-176314205	chr5:176314123-176314201		chr5:176314202-176314205	chr5:176314205-176314206		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	cassette	HEXA	chr15	-	chr15:72645520-72647899;chr15:72643576-72647899	chr15:72643576-72646031,chr15:72645520-72646031;chr15:72646079-72647899		chr15:72646032-72646078			98.32	100.00	98.01	100.00	98.15	100.00	99.12	96.97	99.10	100.00	98.89	100.00	99.37	96.19	99.24	99.58	99.44	100.00	100.00	94.79	96.36	100.00	98.54	99.65	100.00	98.12	98.27	100.00	97.87	100.00	100.00	96.25	95.56	98.87	96.97	99.17	99.69	97.55	-2.14	0.147694	0.709176
K	intron_retention	MARS	chr12	+	chr12:57910348-57911065				chr12:57910347-57910348;chr12:57911065-57911066		92.31	89.71	96.55	93.94	97.14	100.00	83.33	100.00	90.32	NA	NA	NA	100.00	81.25	80.00	100.00	85.71	NA	84.62	100.00	84.75	100.00	100.00	87.50	93.33	87.10	93.10	100.00	90.32	79.17	96.08	93.75	93.24	94.12	90.32	88.89	91.47	94.19	2.72	0.803697	1.000000
K	cassette	MRPL16	chr11	-	chr11:59575323-59577327	chr11:59575323-59576205;chr11:59576346-59577327		chr11:59576206-59576345			0.00	0.00	2.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.70	NA	NA	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	jcn_only_AA	BLMH	chr17	-	chr17:28576187-28593902;chr17:28588783-28593902	chr17:28591035-28593902		chr17:28576187-28588782;chr17:28588783-28591034	chr17:28576186-28576187;chr17:28588782-28588783		0.00	5.88	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AA	RAB10	chr2	+	chr2:26257605-26321536;chr2:26257605-26321530;chr2:26257605-26270005	chr2:26257605-26316459		chr2:26270006-26316459;chr2:26316460-26321530;chr2:26321531-26321536	chr2:26316459-26316460;chr2:26321530-26321531;chr2:26321536-26321537		1.50	0.00	0.00	24.14	12.96	68.42	0.83	0.00	1.19	3.42	2.54	2.83	0.00	1.15	0.84	6.19	2.59	2.23	0.00	0.00	0.00	3.20	2.56	3.60	NA	1.05	1.36	4.00	0.00	4.00	1.77	0.00	0.00	2.12	2.08	0.00	0.00	1.10	1.10	0.066964	0.663989
N	jcn_only_AA	SNRPD1	chr18	+	chr18:19202763-19203708;chr18:19202763-19203831	chr18:19202763-19203835		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		4.76	11.72	4.65	9.02	9.56	11.20	0.00	0.00	0.00	12.00	6.54	10.17	8.42	0.00	9.62	4.25	8.09	7.81	12.00	0.00	12.50	4.12	5.56	0.00	26.19	0.00	7.69	0.00	5.77	0.00	0.00	5.88	12.90	0.00	6.06	0.00	11.86	0.00	-11.86	0.022922	0.600815
K	intron_retention		chr8	-	chr8:67834350-67834558				chr8:67834349-67834350;chr8:67834558-67834559		13.95	10.00	11.24	11.51	12.93	12.50	0.88	0.00	0.00	0.00	1.10	0.00	0.93	0.00	5.88	1.63	3.41	0.00	12.50	18.75	7.91	10.91	11.68	6.35	11.09	18.00	10.48	11.49	7.97	8.11	14.29	12.75	11.90	6.82	10.81	4.84	10.54	14.12	3.57	0.902220	1.000000
N	jcn_only_AD	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6919905-6920228;chr17:6919845-6920228;chr17:6920001-6920228	chr17:6920005-6920228		chr17:6919845-6919904;chr17:6919905-6920000;chr17:6920001-6920004	chr17:6919844-6919845;chr17:6919904-6919905;chr17:6920000-6920001		96.00	89.04	93.52	91.67	93.48	96.00	96.05	98.59	96.62	98.53	97.56	98.18	97.53	98.61	97.14	97.37	97.14	98.18	90.35	95.54	92.97	91.38	88.98	89.83	94.15	96.19	95.73	96.30	94.55	96.30	91.96	91.03	90.12	90.43	91.89	93.70	92.25	96.09	3.84	0.094596	0.639657
K	intron_retention	IFIH1	chr2	-	chr2:163124080-163124596				chr2:163124079-163124080;chr2:163124596-163124597		5.48	0.00	4.93	0.84	0.00	0.83	0.00	0.56	0.50	0.00	0.00	0.11	0.00	0.48	0.87	1.00	0.00	0.46	2.70	3.72	1.33	3.19	2.50	2.51	0.00	2.88	3.45	2.62	0.00	1.23	2.87	4.90	2.50	5.51	4.44	2.84	0.00	2.88	2.88	0.588809	1.000000
K	alternative_acceptor	UPP1,ZNF282	chr7	+	chr7:48143009-48146469	chr7:48143009-48143378		chr7:48143379-48146469	chr7:48146469-48146470		15.11	4.76	26.79	5.56	5.26	2.68	2.63	3.95	2.38	3.73	3.39	1.79	5.56	4.76	9.30	5.23	6.82	2.55	5.00	13.91	7.23	14.92	11.63	17.18	3.12	13.51	16.67	17.59	8.25	10.47	13.13	22.00	2.94	23.77	16.28	20.42	3.94	13.32	9.38	0.020238	0.527491
K	intron_retention		chr5	-	chr5:179292361-179292837				chr5:179292360-179292361;chr5:179292837-179292838		1.89	0.00	2.27	NA	2.08	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.77	0.00	0.00	0.00	0.00	0.00	4.76	3.33	0.00	0.00	4.30	0.00	0.00	0.00	5.41	0.00	1.10	0.00	0.00	0.00	0.00	2.44	2.38	2.78	0.00	0.00	0.00	0.680064	1.000000
K	jcn_only_AD	UFD1L	chr22	-	chr22:19463126-19466347;chr22:19463126-19466285	chr22:19463126-19466605		chr22:19466286-19466347;chr22:19466348-19466605	chr22:19466347-19466348;chr22:19466605-19466606		97.62	100.00	94.74	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	98.08	100.00	100.00	100.00	100.00	NA	96.61	97.50	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	99.04	-0.96	0.087743	0.632469
N	jcn_only_AA	CXorf38	chrX	-	chrX:40490026-40495784	chrX:40491151-40495784		chrX:40490026-40491150	chrX:40490025-40490026		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.233925	0.663989
K	intron_retention		chr19	-	chr19:54868576-54871628				chr19:54868575-54868576;chr19:54871628-54871629		8.69	8.13	11.79	8.00	7.22	15.38	1.09	1.22	0.71	0.00	0.49	0.00	3.12	1.64	5.10	2.56	0.70	0.00	15.79	10.00	10.48	5.77	13.33	14.63	26.32	5.78	6.41	6.49	4.93	8.39	11.05	11.69	13.16	9.32	7.42	10.91	10.64	7.23	-3.41	0.384902	1.000000
N	jcn_only_AD		chr19	-	chr19:1108704-1108781;chr19:1108704-1108785	chr19:1108704-1108777		chr19:1108778-1108781;chr19:1108782-1108785	chr19:1108781-1108782;chr19:1108785-1108786		94.44	100.00	93.91	97.14	100.00	90.29	100.00	97.56	95.28	93.86	100.00	95.35	100.00	96.97	92.92	92.66	94.74	91.67	100.00	95.28	93.43	96.25	90.00	95.87	80.95	92.86	94.30	92.31	100.00	93.02	93.98	93.45	90.62	100.00	100.00	93.60	100.00	94.86	-5.14	0.981673	0.993198
K	jcn_only_AA	NDUFB2,TBXAS1	chr7	+	chr7:140404764-140406362	chr7:140404764-140405918		chr7:140405919-140406362	chr7:140406362-140406363		2.27	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	5.88	0.60	0.91	0.00	2.42	0.00	0.00	0.00	0.303415	0.663989
K	alternative_first_exon	DYNC1I2	chr2	+	chr2:172544677-172546656,chr2:172544514-172546656,chr2:172544869-172546656,chr2:172543969-172546656;chr2:172544384-172546656;chr2:172545159-172546656	chr2:172544138-172546656	chr2:172544182-172544383;chr2:172544981-172545158	chr2:172543919-172544137			27.78	23.08	41.38	NA	NA	15.38	34.72	44.78	42.19	47.92	45.61	45.10	29.17	40.98	46.48	55.77	44.07	39.13	15.38	47.06	28.57	25.00	16.67	38.46	16.13	50.00	50.00	35.00	20.83	33.33	40.00	45.45	4.55	30.00	26.92	26.67	19.60	42.88	23.27	0.003501	0.028330
N	jcn_only_AA	CCDC9	chr19	+	chr19:47761661-47761819;chr19:47761661-47761815	chr19:47761661-47761842		chr19:47761816-47761819;chr19:47761820-47761842	chr19:47761819-47761820;chr19:47761842-47761843		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	5.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	NDUFS7	chr19	+	chr19:1393330-1395389				chr19:1393329-1393330;chr19:1395389-1395390		2.22	8.92	8.11	3.85	6.21	6.12	2.80	6.67	8.70	0.00	5.00	0.00	2.97	0.00	7.41	1.56	5.56	0.00	7.82	6.25	6.45	4.88	8.33	2.94	13.10	9.09	10.00	2.13	4.72	1.54	10.71	20.59	7.77	7.14	9.72	1.19	7.79	6.46	-1.33	0.607826	1.000000
K	intron_retention	ATF4	chr22	+	chr22:39917677-39917777				chr22:39917676-39917677;chr22:39917777-39917778		6.43	7.25	7.91	5.47	2.99	5.00	0.00	0.49	0.41	0.42	0.00	0.75	2.16	0.00	0.53	1.08	0.48	0.78	11.27	10.17	7.09	5.91	4.42	8.53	3.08	5.26	3.01	3.43	1.85	4.08	18.13	12.90	15.56	6.00	4.58	6.38	5.17	5.84	0.68	0.929099	1.000000
N	alternative_acceptor	EDEM2	chr20	-	chr20:33705657-33706400;chr20:33703762-33706400	chr20:33703737-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		94.25	97.53	93.90	100.00	98.57	100.00	100.00	95.38	97.62	100.00	95.00	100.00	96.23	100.00	97.44	100.00	95.65	100.00	98.11	96.59	95.00	96.00	95.45	95.45	97.73	96.77	95.06	94.12	93.33	97.44	97.92	96.08	97.59	96.23	92.45	96.77	97.66	96.68	-0.98	0.305528	0.709013
N	alternative_donor	FDPS	chr1	+	chr1:155282196-155287731;chr1:155282071-155287731	chr1:155282187-155287731		chr1:155282071-155282186;chr1:155282187-155282195	chr1:155282070-155282071;chr1:155282186-155282187		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.31	97.56	100.00	100.00	94.44	78.57	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	71.88	100.00	86.96	100.00	100.00	100.00	100.00	0.00	0.490212	0.745779
K	intron_retention	TSTA3	chr8	-	chr8:144696399-144696489				chr8:144696398-144696399;chr8:144696489-144696490		4.35	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	8.11	2.04	0.00	0.00	0.00	0.00	1.78	1.78	0.789913	1.000000
K	coord_cassette	MVD	chr16	-	chr16:88725129-88729418	chr16:88725129-88726927;chr16:88727046-88727155;chr16:88727250-88729418		chr16:88726928-88727045;chr16:88727156-88727249			0.00	4.65	0.00	0.00	2.13	NA	1.92	4.35	4.00	5.56	1.79	5.26	3.33	2.86	4.84	0.00	1.82	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	1.79	0.00	0.00	2.13	0.00	0.96	0.00	-0.96	0.700612	0.844933
K	intron_retention		chr11	-	chr11:533945-534211				chr11:533944-533945;chr11:534211-534212		10.53	8.77	5.56	9.09	6.25	13.33	3.23	NA	0.00	0.00	0.00	0.00	5.41	0.00	6.67	0.00	0.00	0.00	4.76	8.33	5.13	11.54	4.35	0.00	18.18	0.00	5.56	0.00	8.89	0.00	5.56	4.76	7.69	4.35	4.35	3.45	6.55	5.56	-0.99	0.687542	1.000000
N	jcn_only_AA	DUS1L	chr17	-	chr17:80016695-80017823	chr17:80016907-80017823		chr17:80016695-80016906	chr17:80016694-80016695		0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	2.56	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.596262	0.812521
K	intron_retention		chr2	-	chr2:231041441-231042253				chr2:231041440-231041441;chr2:231042253-231042254		7.61	7.14	11.11	3.57	0.00	2.43	0.00	3.47	5.49	0.00	0.00	3.51	26.32	13.69	20.19	17.07	25.00	15.25	3.57	8.54	1.92	11.76	15.79	4.67	7.14	4.41	6.52	8.14	10.00	1.91	9.70	15.69	6.03	9.09	16.67	8.30	6.58	8.07	1.49	0.837672	1.000000
K	intron_retention	CPSF3L	chr1	-	chr1:1248505-1248888				chr1:1248504-1248505;chr1:1248888-1248889		3.92	0.00	9.62	4.00	3.39	0.00	0.00	0.00	5.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	6.00	0.00	3.64	4.76	4.00	6.98	9.84	3.23	0.00	8.70	4.44	3.33	4.88	2.70	9.62	6.67	3.95	5.26	5.26	3.28	1.82	4.34	2.52	0.598011	1.000000
K	intron_retention	DGCR14	chr22	-	chr22:19121989-19122572				chr22:19121988-19121989;chr22:19122572-19122573		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479438;chr10:45478112-45478357;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45479343		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		1.60	0.00	0.00	NA	NA	NA	1.47	3.26	2.40	1.27	0.00	0.00	0.00	2.85	2.24	1.83	0.00	0.00	NA	1.89	1.16	3.85	0.00	0.00	0.00	4.17	3.38	0.00	0.00	1.50	0.00	0.00	0.00	5.13	0.00	1.49	0.00	2.37	2.37	0.019044	0.537091
K	alternative_acceptor	AKAP8L	chr19	-	chr19:15512105-15514285	chr19:15512415-15514285		chr19:15512105-15512414	chr19:15512104-15512105		97.56	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	93.02	96.83	100.00	100.00	100.00	100.00	100.00	96.86	-3.14	0.044485	0.570243
N	cassette	CYFIP1	chr15	+	chr15:22998519-23002875	chr15:22998519-23000095;chr15:23000244-23002875		chr15:23000096-23000243			100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	ARMC10	chr7	+	chr7:102724278-102727076	chr7:102724278-102724476;chr7:102724510-102727076		chr7:102724477-102724509			10.00	0.00	13.04	NA	25.00	NA	6.25	0.00	0.00	6.67	8.57	16.67	8.00	0.00	3.70	14.81	12.50	NA	NA	0.00	NA	0.00	10.00	0.00	0.00	NA	0.00	NA	11.11	NA	NA	10.00	NA	0.00	3.70	21.43	3.12	0.00	-3.12	0.755677	0.923121
K	jcn_only_AA	MS4A14,MS4A7	chr11	+	chr11:60146138-60170384;chr11:60146138-60150652	chr11:60146138-60150601					93.41	79.55	92.47	NA	86.05	NA	93.58	94.06	90.00	91.53	91.58	93.83	92.09	94.31	100.00	91.95	93.01	92.63	93.75	95.77	100.00	86.27	92.00	94.25	NA	93.56	91.67	90.70	87.91	90.91	94.06	94.52	100.00	89.91	90.84	91.36	93.58	94.06	0.48	0.514404	0.760908
K	intron_retention	SCYL1	chr11	+	chr11:65305796-65305912				chr11:65305795-65305796;chr11:65305912-65305913		11.29	7.91	10.20	11.54	15.71	9.88	2.50	6.06	5.77	5.00	6.98	0.00	5.88	10.00	14.00	5.45	4.35	0.00	9.45	3.92	9.79	13.51	16.36	5.00	13.38	5.13	10.00	9.38	14.71	10.53	9.09	13.41	12.26	8.11	13.95	7.02	8.68	7.57	-1.11	0.869651	1.000000
N	coord_cassette	LILRB1	chr19	+	chr19:55145473-55146709	chr19:55145473-55146038;chr19:55146215-55146554;chr19:55146631-55146709		chr19:55146039-55146214;chr19:55146555-55146630			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.73	100.00	100.00	95.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	TRPM2	chr21	+	chr21:45844823-45845552	chr21:45845333-45845552		chr21:45844823-45845332	chr21:45844822-45844823		2.38	1.03	2.22	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	8.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	5.88	0.00	8.33	3.45	0.00	0.00	0.00	1.45	1.61	0.00	0.00	0.00	0.520130	0.770747
N	alternative_donor	C14orf166	chr14	+	chr14:52466503-52468515	chr14:52466515-52468515		chr14:52466503-52466514	chr14:52466502-52466503		97.06	100.00	98.21	93.55	97.33	100.00	100.00	100.00	100.00	96.77	97.14	100.00	98.59	100.00	100.00	100.00	98.65	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	98.33	97.14	96.92	100.00	100.00	98.04	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.652809	0.843350
N	alternative_acceptor	PPIL2	chr22	+	chr22:22049786-22051091;chr22:22049786-22051035;chr22:22049786-22050319	chr22:22049786-22051173		chr22:22050320-22051035;chr22:22051036-22051091;chr22:22051092-22051173	chr22:22051035-22051036;chr22:22051091-22051092;chr22:22051173-22051174		33.33	56.25	35.29	NA	50.00	NA	46.15	53.33	46.67	47.37	38.71	NA	40.00	30.00	31.25	57.89	55.81	NA	54.55	41.67	54.55	NA	54.55	NA	NA	36.36	33.33	41.67	50.00	63.64	NA	42.86	NA	38.46	42.11	45.45	50.35	36.36	-13.99	0.106925	0.598353
K	jcn_only_AA	CIR1	chr2	-	chr2:175216454-175243650	chr2:175223265-175243650		chr2:175216454-175223264	chr2:175216453-175216454		0.00	0.00	5.88	16.67	14.29	35.71	2.63	4.29	10.91	0.00	3.77	0.00	2.78	4.35	11.86	2.13	3.51	7.89	0.00	4.00	13.33	5.00	0.00	0.00	12.20	0.93	0.00	0.00	8.70	2.17	4.44	0.00	0.00	4.08	2.33	3.03	1.31	4.14	2.83	0.975536	0.991558
N	cassette	TPRA1	chr3	-	chr3:127294109-127294782;chr3:127294109-127294591;chr3:127294109-127295459;chr3:127292632-127295459	chr3:127292632-127294245,chr3:127294109-127294245;chr3:127294349-127294782,chr3:127294349-127294591,chr3:127294349-127295459		chr3:127294246-127294348			97.44	100.00	100.00	98.86	97.83	97.92	100.00	97.96	100.00	99.46	100.00	100.00	100.00	98.61	100.00	100.00	100.00	100.00	97.73	95.12	100.00	97.44	96.40	100.00	100.00	100.00	100.00	99.15	99.07	100.00	100.00	97.44	93.48	95.65	94.74	100.00	100.00	98.28	-1.72	0.797450	0.936947
N	cassette	MARCH2	chr19	+	chr19:8491689-8520288;chr19:8491689-8503271;chr19:8486901-8503271	chr19:8491689-8495541,chr19:8486901-8495541;chr19:8495752-8520288,chr19:8495752-8503271		chr19:8495542-8495751			90.12	99.12	92.45	88.10	87.95	93.90	94.62	94.52	92.26	93.62	92.13	92.59	92.55	90.91	93.75	94.23	93.88	95.08	91.30	92.21	92.04	79.17	84.42	92.11	83.05	94.12	93.06	91.67	96.43	94.35	92.86	89.01	90.48	90.32	79.07	93.44	91.92	92.53	0.61	0.799935	0.936947
N	intron_retention		chr5	+	chr5:179260247-179260592				chr5:179260246-179260247;chr5:179260592-179260593		48.86	65.17	38.71	57.89	50.00	87.50	50.00	35.71	31.58	37.25	30.77	27.27	41.67	27.27	50.00	39.34	35.00	NA	72.94	44.94	63.51	38.54	43.30	39.68	96.05	42.55	57.50	46.43	48.72	65.22	53.44	47.02	82.22	41.18	41.31	38.35	69.06	43.74	-25.31	0.653159	1.000000
K	intron_retention		chr17	+	chr17:41154801-41154888				chr17:41154800-41154801;chr17:41154888-41154889		3.66	0.32	1.89	0.36	0.19	0.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.56	4.86	1.37	1.12	0.20	0.38	0.21	0.00	1.24	0.00	0.00	0.20	9.22	5.20	1.36	0.79	0.93	0.20	0.27	1.83	1.56	0.317570	1.000000
N	jcn_only_AD	WDFY3	chr4	-	chr4:85599433-85600099;chr4:85599433-85600071	chr4:85599433-85600056		chr4:85600057-85600071;chr4:85600072-85600099	chr4:85600071-85600072;chr4:85600099-85600100		0.00	0.00	3.64	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.391002	0.657607
K	jcn_only_AA	SLC43A3	chr11	-	chr11:57193826-57194060;chr11:57193863-57194060	chr11:57193790-57194060		chr11:57193790-57193825;chr11:57193826-57193862	chr11:57193789-57193790;chr11:57193825-57193826		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.36	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.00	NA	0.00	20.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	UBR4	chr1	-	chr1:19408068-19410997	chr1:19408068-19410859		chr1:19410860-19410997	chr1:19410997-19410998		1.01	0.00	0.78	2.82	2.38	5.80	0.00	1.37	1.20	1.61	0.00	0.00	0.00	0.00	0.00	1.49	0.00	1.30	5.26	1.33	2.20	2.25	0.00	1.39	0.00	0.74	1.45	1.28	1.22	1.32	3.06	1.50	3.85	3.33	0.00	1.12	0.00	1.17	1.17	0.809210	0.938332
K	jcn_only_AA	RNF10	chr12	+	chr12:121000874-121001136;chr12:121000874-121001243;chr12:121000874-121001134	chr12:121000874-121001149		chr12:121001135-121001136;chr12:121001137-121001149;chr12:121001150-121001243	chr12:121001136-121001137;chr12:121001149-121001150;chr12:121001243-121001244		91.18	100.00	89.23	90.48	87.23	NA	92.63	89.08	90.71	82.43	82.35	91.07	89.36	86.79	88.29	87.50	85.71	86.27	100.00	88.89	88.24	89.53	91.30	86.81	85.71	92.66	93.86	90.79	90.83	90.70	85.71	87.69	88.89	88.89	83.19	86.93	91.00	88.98	-2.01	0.209088	0.663989
N	alternative_acceptor		chr9	+	chr9:127110102-127138048;chr9:127110102-127111606	chr9:127110102-127113115		chr9:127111607-127113115;chr9:127113116-127138048	chr9:127113115-127113116;chr9:127138048-127138049		100.00	100.00	98.46	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	88.89	100.00	98.04	100.00	100.00	100.00	0.00	0.270289	0.709013
K	intron_retention	MTA2	chr11	-	chr11:62363364-62363481				chr11:62363363-62363364;chr11:62363481-62363482		5.00	0.00	2.94	0.00	2.78	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	1.54	3.23	13.33	3.57	5.88	0.00	0.00	3.12	8.57	9.23	0.00	0.00	4.23	4.26	0.00	1.78	1.78	0.786536	1.000000
N	coord_cassette	SAFB2	chr19	-	chr19:5592899-5598803	chr19:5592899-5593901;chr19:5594190-5595371;chr19:5595509-5598803		chr19:5593902-5594189;chr19:5595372-5595508			97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.38	94.95	95.77	95.56	96.49	100.00	100.00	100.00	0.00	0.506167	0.715788
N	jcn_only_AD	VPS18	chr15	+	chr15:41191407-41194813;chr15:41193221-41194813;chr15:41191197-41194813	chr15:41193213-41194813					78.79	94.74	84.85	NA	88.57	NA	100.00	100.00	100.00	100.00	95.35	100.00	100.00	95.00	100.00	100.00	98.04	93.75	100.00	82.76	95.45	75.00	82.00	80.00	41.67	90.91	84.62	100.00	94.59	100.00	79.31	80.77	90.48	84.21	89.80	81.82	97.37	86.84	-10.53	0.998469	0.999368
K	intron_retention	HNRNPUL1	chr19	+	chr19:41807610-41808569				chr19:41807609-41807610;chr19:41808569-41808570		3.90	12.20	4.00	NA	17.39	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.00	10.00	5.13	5.88	0.00	4.76	0.00	0.00	2.41	2.06	0.00	0.00	3.57	0.00	5.00	0.00	4.17	4.04	2.63	0.00	1.21	1.21	0.936272	1.000000
N	cassette	NMRK1	chr9	-	chr9:77692124-77698002	chr9:77692124-77692405;chr9:77692497-77698002		chr9:77692406-77692496			100.00	85.71	100.00	NA	100.00	NA	100.00	100.00	97.62	NA	100.00	100.00	100.00	100.00	95.45	NA	91.67	NA	100.00	94.87	94.12	NA	100.00	94.12	100.00	92.73	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.67	100.00	100.00	0.00	0.810709	0.936947
K	alternative_donor	STUB1	chr16	+	chr16:731881-732019	chr16:731904-732019		chr16:731881-731903	chr16:731880-731881		15.00	27.66	14.49	31.03	29.65	37.84	14.81	12.50	13.73	19.64	18.89	16.67	13.68	11.54	9.09	14.94	15.84	19.35	26.16	17.65	18.06	23.40	17.19	21.05	29.13	11.36	11.54	20.45	17.17	21.05	19.40	14.74	21.72	16.00	16.09	21.05	23.94	13.75	-10.19	0.038958	0.357790
K	intron_retention	CPSF3L	chr1	-	chr1:1250999-1254675				chr1:1250998-1250999;chr1:1254675-1254676		13.04	29.17	18.92	NA	25.00	NA	0.00	0.00	0.00	6.90	0.00	0.00	0.00	7.14	5.88	5.56	6.90	0.00	25.00	5.56	0.00	15.38	9.09	0.00	NA	0.00	13.64	NA	0.00	NA	20.00	15.62	33.33	21.74	9.52	10.34	25.00	6.35	-18.65	0.774089	1.000000
N	cassette	NAGPA	chr16	-	chr16:5077381-5077980	chr16:5077381-5077846;chr16:5077895-5077980		chr16:5077847-5077894			100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.74	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr3	+	chr3:49060202-49060308				chr3:49060201-49060202;chr3:49060308-49060309		3.23	2.44	2.61	5.08	3.31	6.25	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.96	0.98	1.15	0.00	5.41	1.49	1.69	5.71	7.50	7.32	2.44	2.86	1.85	0.00	1.16	1.61	6.56	6.10	6.49	3.45	3.41	4.12	2.44	2.17	-0.27	0.983547	1.000000
N	jcn_only_AA		chr3	+	chr3:169701042-169702864;chr3:169701042-169706036	chr3:169701042-169703592		chr3:169702865-169703592;chr3:169703593-169706036	chr3:169703592-169703593;chr3:169706036-169706037		100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	99.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.22	100.00	100.00	100.00	100.00	100.00	0.00	0.195074	0.663989
N	alternative_acceptor	UBE2E3	chr2	+	chr2:15769822-15770158	chr2:15769822-15770113		chr2:15770114-15770158	chr2:15770158-15770159		100.00	88.31	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	SAP30BP	chr17	+	chr17:73698652-73699390				chr17:73698651-73698652;chr17:73699390-73699391		3.77	0.00	5.33	1.67	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	2.44	2.67	0.00	2.56	2.53	2.73	0.00	2.30	3.51	1.85	2.99	0.00	3.95	4.48	0.00	2.88	3.80	2.13	0.00	2.48	2.48	0.419446	1.000000
N	intron_retention		chr1	-	chr1:226028889-226034538				chr1:226028888-226028889;chr1:226034538-226034539		91.67	78.26	72.22	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	68.18	85.00	87.10	NA	100.00	NA	100.00	100.00	73.68	NA	100.00	100.00	83.33	85.71	73.08	NA	100.00	92.86	89.13	95.84	6.71	0.493296	1.000000
N	cassette	IRF7	chr11	-	chr11:613866-614796;chr11:613866-614173;chr11:613866-614475	chr11:613866-613950;chr11:614038-614796,chr11:614038-614173,chr11:614038-614475		chr11:613951-614037			94.80	85.00	93.75	86.36	81.25	92.23	86.67	92.72	90.27	83.67	87.50	94.21	100.00	89.77	91.09	91.25	100.00	94.79	100.00	93.61	91.67	88.64	88.24	90.12	90.91	89.83	92.21	88.28	81.82	90.00	92.45	92.86	80.95	91.57	90.91	90.03	88.79	92.59	3.80	0.649501	0.870542
N	jcn_only_AA	E2F4	chr16	+	chr16:67231815-67232033;chr16:67231815-67231949;chr16:67231815-67233183	chr16:67231815-67231910		chr16:67231911-67231949;chr16:67231950-67232033;chr16:67232034-67233183	chr16:67231949-67231950;chr16:67232033-67232034;chr16:67233183-67233184		100.00	100.00	97.37	100.00	98.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.18	100.00	97.35	100.00	97.30	100.00	100.00	100.00	98.84	94.03	100.00	100.00	95.83	100.00	98.81	98.53	100.00	100.00	100.00	100.00	98.86	100.00	100.00	100.00	0.00	0.363217	0.663989
K	cassette	UBTF	chr17	-	chr17:42289375-42290186	chr17:42289375-42289711;chr17:42289823-42290186		chr17:42289712-42289822			11.11	16.00	15.38	NA	13.64	NA	27.45	35.56	30.19	26.92	36.84	NA	37.70	33.33	37.50	40.74	40.74	NA	10.00	24.00	23.08	NA	20.34	NA	NA	19.23	18.00	28.57	26.67	NA	7.14	13.33	9.09	20.00	12.77	20.00	16.00	21.62	5.62	0.821805	0.941649
K	intron_retention		chr1	-	chr1:153925112-153925280				chr1:153925111-153925112;chr1:153925280-153925281		8.77	12.00	17.52	NA	NA	NA	7.41	3.03	2.27	0.00	0.00	0.00	0.00	3.33	8.62	0.00	0.00	0.00	NA	19.44	NA	16.67	12.50	18.18	26.67	12.90	12.79	18.18	13.33	0.00	23.53	22.95	10.00	17.24	6.38	16.67	10.00	10.84	0.84	0.745223	1.000000
K	intron_retention	TMUB2	chr17	+	chr17:42268255-42268473				chr17:42268254-42268255;chr17:42268473-42268474		97.62	100.00	100.00	NA	100.00	NA	87.88	91.23	97.67	NA	88.00	81.82	93.18	100.00	93.18	90.91	81.82	80.00	86.36	90.91	90.91	NA	92.31	91.67	100.00	92.86	93.62	90.91	96.23	95.83	92.86	95.56	100.00	100.00	93.33	100.00	96.59	92.86	-3.73	0.984270	1.000000
K	alternative_donor	SLC39A13	chr11	+	chr11:47436457-47436610	chr11:47436461-47436610		chr11:47436457-47436460	chr11:47436456-47436457		92.11	100.00	83.72	84.62	91.67	78.57	100.00	92.00	86.36	91.67	80.95	NA	95.83	87.50	79.17	93.10	84.21	NA	86.36	89.74	85.29	87.50	77.78	80.00	100.00	92.00	92.59	83.33	80.00	NA	89.66	86.49	84.00	83.87	78.95	85.19	97.91	90.87	-7.04	0.260433	0.633933
N	jcn_only_AD	NDUFS5	chr1	+	chr1:39492075-39494394;chr1:39492701-39494394	chr1:39492071-39494394		chr1:39492071-39492074;chr1:39492075-39492700	chr1:39492070-39492071;chr1:39492074-39492075		55.10	44.16	47.31	50.00	50.23	46.88	75.10	75.00	77.66	77.00	77.15	77.01	47.01	50.00	54.32	43.09	51.89	49.03	53.30	46.91	55.41	44.35	54.21	50.53	59.46	52.94	50.00	49.06	43.98	44.26	38.46	51.47	49.72	49.47	51.43	47.73	51.51	51.47	-0.04	0.804719	0.908253
K	intron_retention	PRICKLE4,TOMM6	chr6	+	chr6:41757075-41757268				chr6:41757074-41757075;chr6:41757268-41757269		10.53	3.53	0.00	0.00	3.12	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.46	6.25	0.75	3.70	2.53	4.65	0.00	0.00	0.00	0.00	0.00	0.00	6.45	5.66	3.45	1.72	0.00	1.59	1.23	3.12	1.90	0.540669	1.000000
K	intron_retention	PLEKHM2	chr1	+	chr1:16054328-16054573				chr1:16054327-16054328;chr1:16054573-16054574		8.65	0.00	10.78	4.17	6.67	NA	0.00	1.45	0.00	0.00	0.69	0.00	2.46	1.41	2.97	0.70	0.91	0.00	5.56	9.32	0.00	7.77	6.54	6.29	1.28	5.93	6.86	4.76	3.20	3.37	10.24	8.09	3.12	8.11	7.75	7.04	1.87	7.29	5.42	0.452142	1.000000
N	alternative_donor	RPLP2	chr11	+	chr11:810040-811596;chr11:810498-811596;chr11:810322-811596	chr11:810358-811596		chr11:810040-810321;chr11:810322-810357;chr11:810358-810497	chr11:810039-810040;chr11:810321-810322;chr11:810357-810358		89.86	91.99	93.85	94.47	93.49	92.47	96.03	97.22	96.24	96.94	96.25	95.79	97.62	98.65	97.97	96.54	96.80	98.20	92.68	96.61	92.33	93.37	92.96	92.73	90.84	97.30	92.75	97.67	93.58	94.21	86.25	88.52	88.09	92.49	93.30	95.30	92.34	96.91	4.58	0.578034	0.799662
N	cassette	EMILIN2	chr18	+	chr18:2885138-2906780	chr18:2885138-2890558;chr18:2892485-2906780		chr18:2890559-2892484			98.96	100.00	100.00	100.00	100.00	91.67	99.54	99.80	100.00	99.64	99.60	98.90	99.74	99.87	99.48	99.28	99.73	98.71	100.00	99.40	100.00	100.00	99.00	99.67	100.00	99.67	100.00	100.00	100.00	98.90	98.82	98.29	100.00	99.73	100.00	99.21	100.00	99.53	-0.47	0.053559	0.585321
N	alternative_acceptor	GAS5	chr1	-	chr1:173833214-173833394	chr1:173833218-173833394		chr1:173833214-173833217	chr1:173833213-173833214		10.00	2.10	2.90	3.32	3.22	4.88	3.57	0.00	0.00	0.00	1.82	0.00	3.85	0.00	0.00	4.69	4.88	0.00	2.11	0.00	2.05	3.28	3.76	3.85	1.44	0.00	1.39	1.45	4.51	3.77	8.05	2.46	3.84	2.53	2.74	1.61	2.84	0.00	-2.84	0.926475	0.978996
N	jcn_only_AD	NPL	chr1	+	chr1:182759040-182763490	chr1:182761422-182763490		chr1:182759040-182761421	chr1:182759039-182759040		97.18	93.90	95.54	100.00	96.43	NA	98.97	100.00	97.70	98.67	97.90	98.84	99.48	100.00	98.41	100.00	99.20	100.00	100.00	98.51	100.00	100.00	98.97	100.00	100.00	100.00	96.24	100.00	98.27	100.00	97.18	97.96	93.10	100.00	98.39	99.52	99.22	99.25	0.03	0.413468	0.676039
N	jcn_only_AA	SF1	chr11	-	chr11:64535296-64535577	chr11:64535317-64535577		chr11:64535296-64535316	chr11:64535295-64535296		100.00	100.00	98.33	100.00	100.00	NA	97.71	97.83	96.83	99.21	98.86	100.00	98.31	97.14	96.95	97.79	98.37	98.67	100.00	100.00	100.00	94.55	98.10	95.65	NA	100.00	98.13	94.83	100.00	100.00	100.00	96.20	NA	100.00	98.72	95.79	99.16	100.00	0.84	0.849516	0.939316
K	intron_retention	RNPEPL1	chr2	+	chr2:241514560-241514918				chr2:241514559-241514560;chr2:241514918-241514919		0.00	0.00	2.70	NA	2.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	NA	0.00	5.88	0.00	0.00	4.29	0.00	0.00	3.33	4.17	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	cassette	CCDC130	chr19	+	chr19:13870087-13873112	chr19:13870087-13872304;chr19:13872383-13873112		chr19:13872305-13872382			8.70	0.00	5.88	7.69	8.00	0.00	0.00	5.88	0.00	0.00	5.88	NA	7.14	7.14	4.76	9.09	14.29	NA	3.70	6.45	5.26	0.00	4.35	7.69	0.00	12.00	6.45	9.52	9.52	0.00	5.13	9.62	7.14	4.76	9.09	13.64	1.85	6.79	4.95	0.029293	0.426840
K	jcn_only_AD	UBL7	chr15	-	chr15:74751238-74753448;chr15:74751238-74753377	chr15:74751238-74753008		chr15:74753009-74753377;chr15:74753378-74753448	chr15:74753377-74753378;chr15:74753448-74753449		0.00	0.00	4.76	NA	0.00	NA	2.70	NA	0.00	0.00	0.00	NA	3.33	NA	0.00	0.00	6.67	NA	NA	0.00	0.00	NA	8.33	NA	NA	0.00	9.09	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	-1.35	0.185146	0.657607
K	intron_retention	TMEM208	chr16	+	chr16:67262535-67262699				chr16:67262534-67262535;chr16:67262699-67262700		1.47	0.00	6.41	3.26	0.82	2.17	0.00	3.70	0.00	2.13	0.00	0.00	0.00	0.00	4.17	1.00	0.00	0.00	2.37	4.82	2.94	1.22	1.63	3.77	0.00	2.94	0.00	1.69	3.53	6.02	4.00	4.96	2.08	0.00	1.18	3.23	0.00	3.32	3.32	0.524821	1.000000
N	alternative_first_exon	TCTEX1D2,TM4SF19-TCTEX1D2	chr3	-	chr3:196043103-196044906;chr3:196043103-196050614;chr3:196043103-196065134	chr3:196043103-196044910	chr3:196050615-196050868;chr3:196065135-196065374	chr3:196044911-196045159			16.00	17.24	41.67	3.49	13.79	2.27	0.80	1.92	7.69	0.97	1.78	0.50	4.17	NA	NA	1.40	23.08	7.41	14.81	15.00	0.80	1.50	15.52	5.45	9.89	8.70	NA	2.13	8.97	3.39	3.45	17.65	4.90	4.85	5.32	4.85	7.40	8.70	1.30	0.924940	0.957206
K	intron_retention	SMARCD2	chr17	-	chr17:61910352-61910428				chr17:61910351-61910352;chr17:61910428-61910429		6.06	13.04	6.76	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	7.84	7.69	4.35	3.57	9.38	8.96	6.00	7.35	0.00	0.00	0.00	16.28	18.75	11.54	9.09	8.00	0.00	5.95	6.03	0.08	0.999674	1.000000
K	intron_retention	GSTK1	chr7	+	chr7:142962186-142962353				chr7:142962185-142962186;chr7:142962353-142962354		20.00	18.92	25.00	4.55	10.48	6.76	0.72	0.00	2.88	1.04	1.08	1.10	2.49	7.55	4.29	0.73	0.54	0.00	17.83	16.67	7.83	2.56	9.76	5.50	15.79	8.57	16.50	3.90	6.52	4.29	8.96	16.38	14.96	6.72	9.93	10.91	15.38	8.77	-6.61	0.951352	1.000000
K	cassette	ZNHIT1	chr7	+	chr7:100861499-100865884	chr7:100861499-100861599;chr7:100861767-100865884		chr7:100861600-100861766			2.50	1.11	1.85	0.00	1.72	0.00	2.50	0.00	4.55	5.26	7.69	5.26	2.04	7.69	3.45	4.65	4.65	0.00	0.00	0.00	1.59	3.85	2.47	0.00	0.00	0.00	0.00	0.00	1.20	2.70	0.00	0.00	1.56	0.00	2.78	0.00	1.33	0.00	-1.33	0.722491	0.902377
K	cassette	TBC1D17	chr19	+	chr19:50381830-50383535	chr19:50381830-50382579;chr19:50382762-50383535		chr19:50382580-50382761			66.67	9.09	30.00	NA	27.27	NA	4.35	60.00	30.77	7.69	4.55	NA	6.25	85.71	37.93	8.33	7.14	NA	30.77	65.22	64.29	40.00	42.86	50.00	14.29	84.62	31.58	NA	11.76	78.57	43.75	21.21	25.00	21.05	54.55	51.72	11.69	65.94	54.25	0.000093	0.038633
K	alternative_last_exon	UBE2A	chrX	+	chrX:118716640-118724090	chrX:118716640-118717089	chrX:118724091-118725046	chrX:118717090-118718388			98.56	98.81	96.38	100.00	99.06	100.00	93.85	97.51	93.27	90.62	90.23	97.10	94.48	97.97	94.64	89.70	88.46	97.97	100.00	98.29	98.95	94.74	95.71	96.81	100.00	98.87	96.95	96.67	96.72	99.12	98.95	98.26	100.00	98.56	96.83	97.33	99.41	98.43	-0.98	0.693689	0.811485
K	intron_retention	RNF149	chr2	-	chr2:101893744-101898320				chr2:101893743-101893744;chr2:101898320-101898321		0.48	0.00	2.14	0.00	0.00	1.52	0.00	1.31	0.00	0.72	0.82	0.00	0.00	0.26	0.00	0.00	0.00	0.00	3.23	0.36	0.75	0.00	0.00	0.39	18.18	0.55	0.65	0.00	0.00	0.00	0.00	0.35	2.08	2.59	0.00	0.33	1.04	0.42	-0.62	0.279262	1.000000
K	jcn_only_AD	ATP6AP1	chrX	+	chrX:153660723-153662553	chrX:153662067-153662553					93.00	92.47	94.54	96.88	95.88	NA	93.68	91.53	94.74	93.75	93.62	92.66	94.01	95.26	94.50	94.19	94.71	93.85	93.55	93.90	93.38	95.10	94.98	95.00	88.61	92.54	93.46	96.21	96.63	96.26	96.09	95.69	100.00	94.06	95.28	95.28	93.62	93.45	-0.17	1.000000	1.000000
N	cassette	PFDN2	chr1	-	chr1:161070650-161087741	chr1:161070650-161072076;chr1:161072166-161087741		chr1:161072077-161072165			95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	93.33	100.00	95.45	100.00	97.44	97.70	100.00	90.91	93.94	91.67	93.88	100.00	94.44	100.00	92.00	100.00	93.33	100.00	96.08	100.00	91.67	93.55	85.00	97.06	93.94	96.97	94.69	97.91	3.22	0.472155	0.769873
K	alternative_first_exon	GNAI2	chr3	+	chr3:50273867-50289531;chr3:50275849-50289531;chr3:50268431-50289531;chr3:50264626-50289531;chr3:50289176-50289531;chr3:50284508-50289531	chr3:50273886-50289531	chr3:50275544-50275848;chr3:50268208-50268430;chr3:50263724-50264625;chr3:50289052-50289175;chr3:50284326-50284507	chr3:50273384-50273885			96.48	95.61	93.33	100.00	100.00	NA	99.62	100.00	100.00	100.00	99.78	100.00	99.20	99.35	99.28	99.65	99.59	100.00	95.16	97.92	98.89	97.67	97.21	98.18	97.34	98.87	95.94	99.09	99.55	98.91	96.08	95.48	90.14	95.04	93.67	95.59	96.47	98.40	1.92	0.253027	0.464592
N	alternative_donor	MOB2	chr11	-	chr11:1501717-1502000;chr11:1501717-1501954	chr11:1501717-1502007		chr11:1501955-1502000;chr11:1502001-1502007	chr11:1502000-1502001;chr11:1502007-1502008		5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	jcn_only_AA	CHMP3,RNF103-CHMP3	chr2	-	chr2:86737603-86756340	chr2:86754365-86756340		chr2:86737603-86754364	chr2:86737602-86737603		5.33	7.89	4.76	24.00	18.52	35.63	0.73	5.10	4.08	5.19	6.22	5.45	1.85	8.41	2.41	10.66	5.83	5.65	16.39	1.47	13.04	4.44	9.89	6.94	8.00	3.90	0.00	10.91	10.42	13.58	8.00	3.03	9.84	10.59	3.53	6.60	7.95	5.21	-2.73	0.442582	0.706502
K	intron_retention	LAT	chr16	+	chr16:28997891-28997977				chr16:28997890-28997891;chr16:28997977-28997978		1.23	0.00	4.69	5.00	2.86	0.00	9.09	0.00	10.00	4.55	9.09	0.00	NA	10.00	NA	8.33	NA	NA	0.00	2.56	5.21	0.00	10.00	8.33	11.11	0.00	6.12	6.67	6.25	NA	5.88	2.08	0.00	4.55	4.55	0.00	0.00	1.90	1.90	0.531128	1.000000
N	alternative_acceptor	PLXNB2	chr22	-	chr22:50714393-50715057;chr22:50714618-50715057;chr22:50714351-50715057	chr22:50714657-50715057		chr22:50714351-50714392;chr22:50714393-50714617;chr22:50714618-50714656	chr22:50714350-50714351;chr22:50714392-50714393;chr22:50714617-50714618		1.69	1.67	2.40	3.45	1.41	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	1.41	1.72	0.77	0.00	1.22	2.80	1.63	5.26	5.45	4.17	2.78	2.50	2.86	5.00	2.65	0.00	2.63	1.85	1.44	3.41	3.70	4.62	1.33	2.09	0.76	0.555763	0.826636
K	cassette	BAG6	chr6	-	chr6:31607004-31607975	chr6:31607004-31607276;chr6:31607424-31607975		chr6:31607277-31607423			33.62	40.67	31.71	30.00	28.47	32.54	63.22	60.42	57.35	52.48	49.12	54.95	58.62	55.17	50.70	44.19	50.00	45.05	39.78	36.36	42.79	36.11	34.46	35.71	46.87	47.22	40.37	35.14	42.03	44.96	33.57	34.64	34.56	31.48	35.19	34.82	43.77	41.79	-1.98	0.672357	0.881329
N	jcn_only_AA	SAE1	chr19	+	chr19:47706998-47708318;chr19:47706998-47712415	chr19:47706998-47708360		chr19:47708319-47708360;chr19:47708361-47712415	chr19:47708360-47708361;chr19:47712415-47712416		0.00	0.00	5.17	8.33	0.00	NA	1.75	4.55	2.56	2.44	1.41	0.00	5.13	5.00	0.00	3.23	4.26	4.55	0.00	8.11	0.00	0.00	4.76	11.11	NA	8.70	7.32	0.00	0.00	0.00	0.00	6.06	0.00	6.82	0.00	0.00	0.00	4.78	4.78	0.137920	0.663989
N	alternative_acceptor		chr1	+	chr1:111996979-111998848	chr1:111996979-111998707		chr1:111998708-111998848	chr1:111998848-111998849		97.06	92.31	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.64	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	0.00	0.545874	0.822846
K	intron_retention	RNF149	chr2	-	chr2:101888207-101889588				chr2:101888206-101888207;chr2:101889588-101889589		10.78	3.45	4.69	4.17	9.38	0.00	NA	8.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	8.70	2.63	7.69	2.86	10.34	0.00	9.43	6.36	5.88	6.25	0.00	6.67	7.58	7.69	20.69	4.00	9.26	1.73	8.70	6.97	0.192330	1.000000
N	jcn_only_AA	TYK2	chr19	-	chr19:10472632-10472753;chr19:10472614-10472753	chr19:10472513-10472753		chr19:10472513-10472613;chr19:10472614-10472631	chr19:10472512-10472513;chr19:10472613-10472614		7.14	17.39	5.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	4.17	0.00	0.00	0.00	NA	7.50	6.25	0.00	9.30	20.00	0.00	5.13	5.19	11.76	4.76	10.00	0.00	15.87	NA	9.52	6.78	5.71	0.96	2.56	1.60	0.750147	0.887739
K	jcn_only_AA	DPP7	chr9	-	chr9:140008831-140008914	chr9:140008835-140008914		chr9:140008831-140008834	chr9:140008830-140008831		93.22	94.19	90.91	85.37	89.08	84.62	95.15	93.42	96.94	98.54	95.59	95.65	93.95	93.75	95.10	92.37	92.47	96.88	90.74	97.96	94.67	89.86	90.70	92.31	94.90	96.97	94.68	93.00	94.40	94.25	92.86	94.20	92.41	90.27	90.97	90.20	94.07	93.59	-0.48	0.336775	0.663989
K	cassette	EEF1D	chr8	-	chr8:144663499-144668898	chr8:144663499-144668388;chr8:144668461-144668898		chr8:144668389-144668460			83.33	86.11	86.43	84.44	86.71	85.43	86.93	93.41	89.14	91.06	89.68	92.86	87.92	89.91	90.00	88.21	90.06	89.80	86.82	84.35	89.43	87.05	84.72	86.54	87.25	90.52	86.77	84.66	85.32	85.85	88.08	89.73	83.41	89.07	89.27	88.52	86.88	89.00	2.12	0.311436	0.709176
K	alternative_last_exon	COQ2	chr4	-	chr4:84188362-84188738;chr4:84185517-84188738	chr4:84183809-84188738	chr4:84187850-84188361;chr4:84184977-84185516	chr4:84183742-84183808			0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	NA	NA	5.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.535374
N	jcn_only_AD	ZNF271P	chr18	+	chr18:32870356-32885939	chr18:32871197-32885939		chr18:32870356-32871196	chr18:32870355-32870356		75.00	69.23	85.00	88.89	85.37	74.36	84.00	100.00	88.24	84.21	81.08	86.36	78.57	87.50	86.67	76.92	80.00	86.67	86.05	77.27	87.10	83.33	78.79	81.82	83.72	83.33	84.62	85.71	65.38	67.86	80.95	82.61	86.11	84.62	83.33	100.00	83.86	82.14	-1.72	0.561874	0.778873
K	intron_retention	HYPK,SERF2	chr15	+	chr15:44093768-44093908				chr15:44093767-44093768;chr15:44093908-44093909		0.00	2.38	2.22	0.00	5.21	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	5.13	2.36	0.00	4.05	0.00	1.69	0.00	4.65	0.00	1.28	3.17	4.35	4.00	2.00	3.39	1.59	1.92	1.26	0.00	-1.26	0.881957	1.000000
K	alternative_acceptor	C19orf25	chr19	-	chr19:1475258-1478772	chr19:1475514-1478772		chr19:1475258-1475513	chr19:1475257-1475258		18.18	17.39	26.32	9.09	11.76	NA	5.00	16.67	4.76	0.00	4.76	9.09	6.45	4.35	6.90	3.57	0.00	NA	NA	25.00	8.33	20.00	23.53	NA	7.14	11.76	23.08	6.25	14.29	6.25	17.65	26.32	16.67	23.53	18.75	25.00	7.14	17.16	10.02	0.226131	0.679463
K	intron_retention		chr7	-	chr7:45003762-45004013				chr7:45003761-45003762;chr7:45004013-45004014		1.57	0.00	2.17	1.52	0.00	1.71	0.00	0.53	1.61	1.39	0.00	0.00	0.00	0.71	2.38	1.96	0.00	2.70	1.04	1.52	1.29	0.00	0.00	8.33	1.32	1.57	1.91	2.08	0.99	2.41	1.33	3.13	0.00	2.74	0.00	3.67	0.00	1.43	1.43	0.352397	1.000000
N	cassette	DPM1	chr20	-	chr20:49557471-49562273	chr20:49557471-49558567;chr20:49558664-49562273		chr20:49558568-49558663			100.00	100.00	100.00	100.00	94.29	100.00	100.00	97.06	100.00	100.00	98.68	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.77	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	0.00	0.175277	0.709176
K	intron_retention	KAT5	chr11	+	chr11:65486426-65486517				chr11:65486425-65486426;chr11:65486517-65486518		11.11	8.77	11.48	9.30	4.00	2.94	2.00	0.00	1.52	1.72	3.17	0.00	5.88	1.69	1.75	3.51	3.23	0.00	9.43	6.35	7.58	6.38	7.35	6.52	0.00	3.45	10.34	7.89	7.04	4.88	9.89	12.66	6.56	5.77	6.52	7.50	6.22	4.90	-1.32	0.987259	1.000000
N	alternative_acceptor	MAP7D1,RPS6KA1	chr1	+	chr1:26898785-26899714	chr1:26898785-26898882		chr1:26898883-26899714	chr1:26899714-26899715		3.18	4.31	6.39	4.17	1.23	8.33	0.61	1.28	0.88	1.01	1.64	0.93	0.93	1.52	2.15	1.79	1.14	0.00	1.35	3.60	2.55	6.82	2.68	2.82	9.68	2.17	4.50	1.89	2.44	1.85	2.15	3.95	2.56	4.00	4.59	2.88	1.96	2.16	0.21	0.548907	0.824249
N	cassette	TNRC18	chr7	-	chr7:5415856-5417001	chr7:5415856-5416477;chr7:5416625-5417001		chr7:5416478-5416624			92.31	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	0.00	0.391002	0.709410
K	jcn_only_AA	RAB34	chr17	-	chr17:27043077-27043920	chr17:27043080-27043920		chr17:27043077-27043079	chr17:27043076-27043077		6.12	26.32	14.91	NA	9.09	NA	8.00	9.76	10.53	7.69	9.09	NA	10.34	6.06	11.48	11.11	15.79	15.38	NA	10.34	11.86	NA	11.11	NA	23.53	7.50	13.33	12.50	10.00	0.00	19.35	14.12	0.00	16.67	10.53	26.67	10.34	8.63	-1.71	0.508302	0.759046
N	alternative_donor	RHOT2	chr16	+	chr16:723131-723479	chr16:723135-723479		chr16:723131-723134	chr16:723130-723131		5.88	1.32	2.74	1.82	1.50	1.49	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	3.57	2.86	0.00	1.63	1.67	2.04	2.38	2.08	0.00	5.81	0.00	4.35	2.38	1.64	2.44	7.32	3.36	2.92	2.50	2.99	3.08	1.77	0.83	-0.94	0.895788	0.977754
K	alternative_donor	PPCS	chr1	+	chr1:42923022-42925273;chr1:42923239-42925273	chr1:42924977-42925273		chr1:42923022-42923238;chr1:42923239-42924976	chr1:42923021-42923022;chr1:42923238-42923239		5.88	2.86	5.26	NA	3.12	NA	1.35	0.00	1.59	0.00	1.47	0.00	1.32	2.33	1.64	0.00	1.56	0.00	0.00	2.86	4.55	14.29	6.98	14.29	0.00	4.76	6.82	9.09	6.98	5.88	3.33	3.45	0.00	7.41	4.92	7.50	0.66	3.09	2.43	0.045091	0.377550
K	intron_retention	MRPL18	chr6	+	chr6:160218551-160219083				chr6:160218550-160218551;chr6:160219083-160219084		0.00	0.00	1.72	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	2.30	7.14	0.00	2.33	0.00	0.00	0.00	0.00	2.13	3.17	1.49	0.00	1.49	2.50	0.00	1.06	1.06	0.650996	1.000000
N	alternative_acceptor	SAFB	chr19	+	chr19:5664451-5667056;chr19:5664451-5666481	chr19:5664451-5666345		chr19:5666346-5666481;chr19:5666482-5667056	chr19:5666481-5666482;chr19:5667056-5667057		3.57	1.08	4.04	0.97	1.50	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	1.29	2.86	1.42	1.59	2.50	5.08	0.66	4.26	2.02	0.00	1.23	1.08	2.91	2.34	0.61	4.35	3.03	4.76	0.64	2.88	2.25	0.077905	0.585944
K	intron_retention	ATP5B	chr12	-	chr12:57033935-57039001				chr12:57033934-57033935;chr12:57039001-57039002		96.58	100.00	100.00	100.00	97.33	100.00	94.08	97.46	95.98	97.31	95.99	97.20	96.23	100.00	95.95	95.71	96.52	96.97	100.00	95.15	93.38	97.71	95.31	95.71	100.00	100.00	96.23	100.00	96.45	94.29	100.00	93.04	100.00	97.47	94.91	98.43	100.00	98.73	-1.27	0.979671	1.000000
N	alternative_donor	GMPPA	chr2	+	chr2:220368936-220369949	chr2:220368941-220369949		chr2:220368936-220368940	chr2:220368935-220368936		0.00	0.00	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	3.03	2.70	4.76	6.90	7.14	0.00	6.67	0.00	0.00	4.17	5.26	4.17	3.57	0.00	4.55	0.00	11.11	0.00	1.51	1.51	0.098415	0.497728
K	cassette	HEXDC	chr17	+	chr17:80398211-80398872;chr17:80397590-80398872	chr17:80398211-80398348,chr17:80397590-80398348;chr17:80398490-80398872		chr17:80398349-80398489			22.22	26.47	41.67	NA	6.25	NA	NA	NA	9.09	NA	NA	NA	NA	18.75	15.38	NA	NA	NA	31.58	22.22	43.75	NA	NA	NA	25.00	30.77	23.08	NA	16.67	NA	30.77	33.33	35.00	NA	NA	NA	29.02	22.22	-6.80	0.218334	0.709176
N	alternative_acceptor	ZDHHC12	chr9	-	chr9:131483777-131483929;chr9:131483810-131483929;chr9:131483782-131483929;chr9:131483680-131483929	chr9:131483760-131483929		chr9:131483680-131483759;chr9:131483760-131483776;chr9:131483777-131483781;chr9:131483782-131483809	chr9:131483679-131483680;chr9:131483759-131483760;chr9:131483776-131483777;chr9:131483781-131483782		8.51	16.67	6.98	0.00	5.71	NA	11.11	8.82	10.00	8.00	12.00	14.29	10.81	9.52	8.00	12.50	5.45	17.65	7.69	10.53	4.92	NA	11.76	NA	33.33	21.43	27.45	20.00	20.00	18.18	16.07	20.00	24.32	15.38	19.23	20.83	13.89	10.02	-3.87	0.317361	0.709013
N	alternative_acceptor	IL4R	chr16	+	chr16:27353581-27356189	chr16:27353581-27355914		chr16:27355915-27356189	chr16:27356189-27356190	chr16:27353442-27353580;chr16:27356190-27356341	0.00	10.00	0.00	NA	NA	NA	0.00	0.00	0.47	1.48	0.00	0.75	0.00	0.00	0.40	1.75	0.00	2.63	NA	0.00	0.00	0.00	0.00	1.20	6.25	0.00	0.83	0.00	5.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.12	0.00	-3.12	0.198198	0.664085
N	jcn_only_AA	MAN2B1	chr19	-	chr19:12769322-12772073;chr19:12769325-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769328-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		0.00	0.00	0.55	3.23	0.00	0.00	1.63	1.59	1.54	1.60	1.63	1.73	1.47	3.29	1.08	2.73	0.86	1.49	7.69	4.61	7.53	5.21	6.39	6.05	8.23	6.01	4.62	5.91	5.07	5.43	6.30	4.76	4.26	3.83	4.38	5.47	2.94	3.95	1.01	0.890285	0.960559
N	jcn_only_AA	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2419918;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2420049		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		0.00	0.00	0.00	3.24	2.79	3.04	2.74	NA	10.00	5.13	6.67	8.33	5.13	0.00	0.00	2.51	3.03	10.00	2.09	3.33	3.03	2.52	1.30	0.00	1.26	0.00	0.00	4.63	3.79	1.54	0.00	0.00	3.54	2.30	0.94	1.22	2.42	0.00	-2.42	0.102924	0.663989
K	intron_retention		chr17	+	chr17:80399143-80399675				chr17:80399142-80399143;chr17:80399675-80399676		5.41	8.06	23.81	NA	5.88	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	5.26	NA	0.00	NA	7.50	8.70	0.00	NA	11.11	NA	1.92	2.44	12.50	NA	8.00	13.04	3.70	11.11	2.86	NA	NA	15.38	2.86	3.07	0.21	0.573227	1.000000
N	jcn_only_AD	ZNF669	chr1	-	chr1:186283857-186286617	chr1:186283857-186286613		chr1:186286614-186286617	chr1:186286617-186286618		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.07	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	98.36	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	cassette	MAPK13	chr6	+	chr6:36103639-36104260;chr6:36103639-36104432	chr6:36103639-36103795;chr6:36103826-36104432,chr6:36103826-36104260		chr6:36103796-36103825			90.74	87.50	77.19	91.67	87.76	91.67	100.00	100.00	91.67	96.12	99.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.43	87.10	86.57	81.94	92.59	100.00	100.00	89.13	90.00	89.81	93.62	95.65	85.71	78.95	81.31	87.80	92.50	100.00	97.83	-2.17	0.658673	0.874582
K	intron_retention	SLC25A39	chr17	-	chr17:42397485-42397563				chr17:42397484-42397485;chr17:42397563-42397564		0.00	0.50	1.30	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	1.45	0.00	1.16	0.00	0.00	0.00	1.12	0.00	0.00	0.00	15.38	6.49	5.07	0.00	0.00	0.00	0.25	0.00	-0.25	0.859559	1.000000
K	alternative_acceptor	MGAT4A	chr2	-	chr2:99237969-99242185	chr2:99242056-99242185		chr2:99237969-99242055	chr2:99237968-99237969		100.00	100.00	94.57	NA	NA	NA	93.18	91.38	89.47	100.00	91.23	NA	93.55	88.89	90.48	100.00	96.83	NA	NA	92.31	73.33	100.00	96.67	NA	NA	85.00	93.68	93.75	86.96	NA	NA	100.00	100.00	100.00	93.10	100.00	96.78	91.38	-5.40	0.142872	0.644068
N	alternative_donor		chr9	-	chr9:140006683-140007200;chr9:140006683-140007257;chr9:140006683-140007171	chr9:140006683-140007196		chr9:140007172-140007196;chr9:140007197-140007200;chr9:140007201-140007257	chr9:140007196-140007197;chr9:140007200-140007201;chr9:140007257-140007258		90.62	92.50	87.18	92.86	95.00	98.81	100.00	100.00	100.00	100.00	100.00	100.00	98.61	100.00	94.44	100.00	100.00	100.00	94.44	95.45	95.70	92.16	94.26	95.65	97.24	96.97	93.02	97.14	95.76	97.44	95.74	86.84	95.42	91.94	95.83	96.70	96.33	96.35	0.02	0.959481	0.985822
K	jcn_only_AA	MFSD10	chr4	-	chr4:2934137-2934326	chr4:2934240-2934326		chr4:2934137-2934239	chr4:2934136-2934137		100.00	100.00	100.00	90.00	95.83	NA	100.00	95.45	96.77	97.37	97.92	94.12	96.72	96.00	91.89	97.14	96.72	95.83	82.35	100.00	88.89	88.24	93.55	92.31	100.00	94.44	96.00	91.67	89.66	100.00	72.73	83.33	100.00	80.77	88.46	94.59	100.00	95.72	-4.28	0.519603	0.760908
K	intron_retention		chr17	-	chr17:73823527-73824037				chr17:73823526-73823527;chr17:73824037-73824038		91.89	94.25	92.94	90.62	94.20	87.23	94.74	89.66	88.10	NA	100.00	NA	94.74	91.18	90.70	NA	100.00	NA	88.30	87.06	86.88	91.67	96.43	NA	85.14	80.22	93.41	100.00	92.31	93.33	82.93	84.34	89.92	100.00	95.12	91.67	92.09	88.36	-3.73	0.710001	1.000000
N	cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4408105-4409296;chr16:4407261-4409296	chr16:4407261-4408367,chr16:4408105-4408367;chr16:4408485-4409296		chr16:4408368-4408484			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.75	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	AUP1	chr2	-	chr2:74755134-74756258;chr2:74755617-74756258	chr2:74755134-74755877,chr2:74755617-74755877;chr2:74756063-74756258		chr2:74755878-74756062			91.80	94.12	83.58	86.96	83.93	NA	100.00	97.18	83.61	94.05	100.00	100.00	97.08	95.59	88.52	95.37	95.96	100.00	68.75	93.65	90.57	88.37	82.72	84.44	100.00	94.55	86.30	93.94	95.40	91.07	88.10	76.00	66.67	83.61	80.77	84.00	95.60	94.10	-1.50	0.419956	0.728865
N	jcn_only_AD	FMNL1	chr17	+	chr17:43309818-43310590;chr17:43309806-43310590	chr17:43309848-43310590		chr17:43309806-43309817;chr17:43309818-43309847	chr17:43309805-43309806;chr17:43309817-43309818		74.47	88.89	69.72	NA	86.36	NA	70.91	71.25	61.45	74.16	77.78	74.47	72.44	75.54	61.09	63.16	74.38	73.47	NA	72.22	70.83	60.61	66.06	66.67	81.67	74.03	71.76	60.78	66.23	50.00	69.39	64.15	66.67	63.38	69.43	65.33	72.44	73.12	0.69	0.465103	0.716512
N	jcn_only_AA	TMEM255B	chr13	+	chr13:114498211-114502311	chr13:114498211-114498292		chr13:114498293-114502311	chr13:114502311-114502312		0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.38	NA	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.595951	0.812521
K	cassette	C8orf59	chr8	-	chr8:86126861-86129614	chr8:86126861-86127149;chr8:86127267-86129614		chr8:86127150-86127266			73.91	100.00	92.86	90.62	93.42	89.06	82.05	83.33	74.07	85.71	85.11	73.91	90.48	76.92	72.73	87.10	76.19	55.56	91.57	86.36	85.71	86.96	90.74	85.71	93.94	83.33	92.50	88.00	90.48	80.00	72.22	100.00	89.04	86.21	91.43	80.00	91.03	80.12	-10.90	0.005639	0.255099
K	intron_retention	EDC4	chr16	+	chr16:67916498-67916581				chr16:67916497-67916498;chr16:67916581-67916582		5.41	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	2.70	3.70	2.67	3.70	0.00	0.00	1.54	0.00	0.00	2.70	16.13	7.14	2.63	0.00	6.12	1.82	0.00	0.00	0.00	0.743562	1.000000
N	jcn_only_AA	HERPUD1	chr16	+	chr16:88105819-88116021	chr16:88105819-88110195		chr16:88110196-88116021	chr16:88116021-88116022		100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	jcn_only_AA	PTMS,ZNF84	chr12	+	chr12:6878841-6879086	chr12:6878841-6879009		chr12:6879010-6879086	chr12:6879086-6879087		6.48	2.06	4.00	3.01	1.72	1.79	4.37	3.56	7.32	2.25	1.67	2.75	1.47	1.77	2.97	3.18	1.64	3.01	4.84	2.88	1.14	3.26	5.31	2.83	1.75	3.54	2.44	5.30	3.29	3.81	2.33	0.00	1.66	3.12	2.24	2.71	1.91	3.21	1.30	0.438497	0.705395
K	jcn_only_AA	PITRM1	chr10	-	chr10:3185924-3186483;chr10:3185694-3186483	chr10:3185968-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		0.00	0.00	7.69	14.29	7.69	14.29	0.00	0.00	9.52	0.00	0.00	5.56	0.00	6.67	2.63	2.60	5.26	0.00	NA	0.00	4.35	6.12	12.90	4.44	NA	5.26	16.67	6.52	0.00	1.47	5.88	8.57	8.33	8.93	5.26	9.47	0.00	2.63	2.63	0.734022	0.881383
N	alternative_last_exon	RP11-580I16.2	chr17	-	chr17:45701433-45713877,chr17:45711531-45713877;chr17:45681485-45713877;chr17:45699454-45713877	chr17:45703994-45713877	chr17:45681226-45681484;chr17:45699208-45699453	chr17:45703372-45703993			0.00	0.00	3.33	0.00	0.00	0.00	0.00	10.00	7.14	0.00	0.00	NA	4.76	0.00	10.00	0.00	0.00	NA	0.00	6.25	0.00	0.00	0.00	NA	0.00	4.55	8.33	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	2.27	0.198627	0.427105
K	intron_retention		chr17	+	chr17:61562734-61563917				chr17:61562733-61562734;chr17:61563917-61563918		8.33	0.00	NA	NA	NA	NA	0.00	0.62	0.00	0.00	0.00	0.00	1.41	1.35	NA	2.13	1.89	0.00	NA	0.00	NA	0.00	0.00	0.00	20.00	0.00	NA	2.50	4.76	0.00	NA	NA	NA	0.00	0.00	4.00	0.70	0.62	-0.08	0.717072	1.000000
N	alternative_donor	HGS	chr17	+	chr17:79663072-79663386;chr17:79663034-79663386	chr17:79663030-79663386		chr17:79663030-79663033;chr17:79663034-79663071	chr17:79663029-79663030;chr17:79663033-79663034		93.33	92.50	92.50	100.00	83.87	NA	100.00	100.00	95.00	100.00	100.00	100.00	96.36	100.00	97.14	97.96	100.00	100.00	100.00	94.44	92.00	90.20	92.54	88.14	61.90	96.77	92.75	94.12	86.49	91.67	90.38	89.16	100.00	92.50	94.03	89.89	98.18	95.60	-2.58	0.547694	0.780856
K	intron_retention		chr17	-	chr17:26943216-26943396				chr17:26943215-26943216;chr17:26943396-26943397		6.12	0.88	10.11	5.00	7.94	9.09	0.00	0.00	3.92	3.12	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	3.57	2.86	6.25	12.12	3.57	8.70	0.00	5.26	6.02	5.41	3.85	0.00	12.00	8.33	4.11	9.09	5.38	7.02	0.95	4.06	3.11	0.634937	1.000000
N	alternative_donor	RPS16	chr19	-	chr19:39924402-39926297;chr19:39924402-39924939;chr19:39924402-39928401	chr19:39924402-39926246		chr19:39924940-39926246;chr19:39926247-39926297;chr19:39926298-39928401	chr19:39926246-39926247;chr19:39926297-39926298;chr19:39928401-39928402		92.00	96.36	86.11	97.18	97.44	97.89	97.59	100.00	95.71	96.39	96.74	96.25	96.91	100.00	92.41	96.15	96.63	97.01	96.81	91.67	97.18	91.49	94.12	91.30	97.37	92.86	94.74	94.83	96.25	95.40	78.38	87.04	95.41	92.31	92.00	91.78	96.86	92.43	-4.43	0.245634	0.615567
N	cassette	PLTP	chr20	-	chr20:44536544-44539790;chr20:44536395-44539790;chr20:44536544-44539509	chr20:44536544-44538580,chr20:44536395-44538580;chr20:44538710-44539790,chr20:44538710-44539509		chr20:44538581-44538709			100.00	77.50	96.43	100.00	96.88	NA	98.10	98.98	97.50	95.95	97.62	96.05	98.80	98.96	100.00	97.67	97.91	98.44	100.00	96.36	100.00	98.82	96.65	97.54	100.00	100.00	100.00	95.35	97.10	100.00	94.34	97.87	93.94	99.07	98.06	98.52	98.45	98.97	0.52	0.395603	0.711787
K	intron_retention		chr11	-	chr11:533613-533765				chr11:533612-533613;chr11:533765-533766		9.09	0.00	0.00	0.00	1.85	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	NA	3.39	NA	0.00	0.00	2.78	0.00	0.00	11.76	8.82	0.00	3.03	0.00	1.70	0.00	-1.70	0.938578	1.000000
K	jcn_only_AD	NACA	chr12	-	chr12:57118308-57118609;chr12:57118308-57119046	chr12:57118308-57118745		chr12:57118610-57118745;chr12:57118746-57119046	chr12:57118745-57118746;chr12:57119046-57119047		6.55	11.55	8.73	5.31	11.15	3.77	9.09	15.45	12.60	3.99	6.42	4.60	9.35	13.64	13.06	6.61	8.60	4.72	15.20	14.88	12.23	6.86	13.06	6.82	11.39	15.89	8.14	10.10	11.11	8.47	8.65	11.62	14.84	8.50	13.51	10.14	11.47	14.26	2.79	0.760618	0.877405
N	jcn_only_AA	VSIG4	chrX	-	chrX:65242009-65242682;chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242343-65242682	chrX:65242252-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		0.00	1.17	0.00	0.00	2.61	0.00	4.06	0.00	0.00	8.93	5.43	5.79	3.76	0.00	10.00	3.32	6.16	7.04	0.00	0.00	0.00	3.59	4.88	3.85	0.00	5.50	0.00	5.13	3.08	4.42	0.00	7.46	1.59	5.34	2.28	3.96	1.38	0.00	-1.38	0.486723	0.744793
K	intron_retention	CXXC1	chr18	-	chr18:47809935-47810074				chr18:47809934-47809935;chr18:47810074-47810075		28.07	41.89	31.17	33.33	25.00	29.41	4.35	0.00	9.09	7.69	3.12	NA	8.33	5.00	3.12	7.69	10.34	NA	34.00	27.45	29.03	31.25	37.29	44.44	44.19	19.61	28.57	18.75	19.05	22.22	48.33	37.50	45.71	27.59	30.95	40.62	37.95	23.53	-14.41	0.728970	1.000000
N	alternative_donor	IFI6	chr1	-	chr1:27995047-27995759;chr1:27995047-27995810;chr1:27995047-27995731;chr1:27995047-27995743	chr1:27995047-27995755		chr1:27995732-27995743;chr1:27995744-27995755;chr1:27995756-27995759;chr1:27995760-27995810	chr1:27995743-27995744;chr1:27995755-27995756;chr1:27995759-27995760;chr1:27995810-27995811		85.47	87.98	86.47	86.30	85.06	83.29	86.27	84.42	84.77	82.82	83.73	81.45	85.60	83.37	83.78	83.27	83.78	81.15	85.04	85.06	82.98	81.25	87.10	81.16	86.67	85.55	85.54	79.84	90.62	83.09	87.12	87.17	86.70	79.00	86.32	82.81	86.47	85.27	-1.20	0.096923	0.495257
K	intron_retention	HNRNPL	chr19	-	chr19:39327421-39328023				chr19:39327420-39327421;chr19:39328023-39328024		2.59	1.74	1.91	1.29	0.60	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.60	2.56	1.67	1.63	1.24	1.42	1.51	0.67	0.43	0.00	0.68	0.54	6.37	2.74	3.08	1.26	1.40	1.25	1.05	1.61	0.56	0.915655	1.000000
K	jcn_only_AD	LSM4	chr19	-	chr19:18420672-18423413	chr19:18420672-18420919					0.00	0.00	2.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD		chr16	-	chr16:67190572-67193576;chr16:67190572-67193727	chr16:67190572-67193740		chr16:67193577-67193727;chr16:67193728-67193740	chr16:67193727-67193728;chr16:67193740-67193741		96.00	94.12	100.00	NA	NA	100.00	84.62	94.44	96.97	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	NA	100.00	100.00	100.00	100.00	98.65	100.00	100.00	NA	NA	NA	97.83	97.06	100.00	2.94	0.387306	0.657607
N	jcn_only_AD	KMO	chr1	+	chr1:241751182-241752049;chr1:241751757-241752049;chr1:241751302-241752049;chr1:241750039-241752049	chr1:241750043-241752049		chr1:241750039-241750042;chr1:241750043-241751181;chr1:241751182-241751301;chr1:241751302-241751756	chr1:241750038-241750039;chr1:241750042-241750043;chr1:241751181-241751182;chr1:241751301-241751302		0.00	13.33	0.00	0.00	0.00	1.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	1.56	0.00	0.00	0.00	0.56	NA	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.34	1.10	0.48	0.00	0.00	0.00	0.418964	0.681153
K	intron_retention	MYO9B	chr19	+	chr19:17322584-17322703				chr19:17322583-17322584;chr19:17322703-17322704		66.18	62.16	69.09	65.31	70.43	57.14	60.00	42.86	58.33	64.71	68.97	NA	70.00	72.73	60.87	81.82	84.62	64.29	68.97	63.27	56.67	76.74	78.60	72.73	60.26	49.12	60.53	70.15	74.30	65.57	70.15	71.43	70.00	75.28	77.14	69.11	65.56	64.73	-0.84	0.817871	1.000000
K	cassette	TM2D1	chr1	-	chr1:62149219-62160368	chr1:62149219-62152463;chr1:62152568-62160368		chr1:62152464-62152567			5.88	15.79	17.86	13.33	4.00	18.18	11.43	6.67	14.81	3.03	12.24	6.06	8.00	15.00	21.95	8.57	7.69	7.14	11.11	9.09	15.38	5.00	14.63	10.34	23.53	19.23	16.98	4.35	6.98	7.69	16.67	32.14	26.67	12.12	14.71	15.79	13.61	12.04	-1.56	0.321194	0.709176
K	intron_retention		chr17	-	chr17:26874428-26874694				chr17:26874427-26874428;chr17:26874694-26874695		28.95	29.85	32.76	NA	47.83	NA	6.25	4.26	6.67	0.00	8.11	NA	12.50	8.82	11.86	4.76	4.65	0.00	26.67	22.73	28.12	NA	32.14	NA	41.18	37.21	26.09	18.18	35.00	NA	41.18	42.86	31.25	35.29	39.13	17.65	28.26	25.84	-2.42	0.733310	1.000000
N	cassette	ETF1	chr5	-	chr5:137844506-137846733	chr5:137844506-137846253;chr5:137846319-137846733		chr5:137846254-137846318			100.00	100.00	98.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.84	100.00	100.00	100.00	100.00	95.00	96.63	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.264363	0.709176
N	alternative_donor		chr7	+	chr7:97911766-97921813	chr7:97920797-97921813		chr7:97911766-97920796	chr7:97911765-97911766		100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	87.50	97.62	86.67	100.00	100.00	100.00	96.30	100.00	NA	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	ISG20L2	chr1	-	chr1:156693255-156693939				chr1:156693254-156693255;chr1:156693939-156693940		3.70	0.00	8.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	11.11	5.56	3.33	7.14	5.88	NA	4.00	2.63	0.00	7.69	0.00	11.76	15.62	7.69	8.33	6.98	5.56	0.00	3.85	3.85	0.980323	1.000000
K	jcn_only_AD	RENBP	chrX	-	chrX:153209423-153209573	chrX:153209423-153209531		chrX:153209532-153209573	chrX:153209573-153209574		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	94.64	100.00	98.67	100.00	100.00	100.00	100.00	100.00	0.00	0.309909	0.657607
K	intron_retention	RP11-343C2.11,VPS4A	chr16	+	chr16:69352615-69352725				chr16:69352614-69352615;chr16:69352725-69352726		6.82	0.00	6.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.52	0.00	5.56	2.44	3.85	NA	0.00	0.00	0.00	0.00	0.00	25.00	10.34	25.00	1.75	6.25	3.23	0.00	3.26	3.26	0.903109	1.000000
K	intron_retention	SUN2	chr22	-	chr22:39134994-39135346				chr22:39134993-39134994;chr22:39135346-39135347		11.90	0.00	5.50	NA	0.00	NA	0.00	6.25	4.69	0.00	0.00	2.13	0.00	5.88	11.29	2.90	0.00	6.98	0.00	5.71	0.00	3.23	3.12	29.73	0.00	23.44	1.82	21.21	2.78	52.00	17.65	6.35	NA	10.00	2.00	40.32	0.00	9.07	9.07	0.027296	1.000000
K	intron_retention	PPP2R5B	chr11	+	chr11:64700719-64701168				chr11:64700718-64700719;chr11:64701168-64701169		3.23	13.04	4.35	NA	8.33	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	5.88	2.17	NA	9.09	NA	5.26	6.06	0.00	0.00	0.00	NA	0.00	1.61	1.61	0.925833	1.000000
N	alternative_donor	SRRM2	chr16	+	chr16:2820211-2820352;chr16:2819286-2820352	chr16:2820229-2820352		chr16:2819286-2820210;chr16:2820211-2820228	chr16:2819285-2819286;chr16:2820210-2820211		14.84	8.66	15.73	14.63	10.06	11.29	4.55	4.08	4.49	5.48	5.81	6.45	6.59	3.57	7.22	6.76	4.90	7.69	6.36	7.89	11.54	12.12	7.14	20.69	8.57	21.52	16.77	13.33	11.45	24.14	15.32	15.89	6.16	14.17	18.71	30.99	6.47	11.37	4.89	0.197631	0.570816
K	intron_retention	PPP1CC	chr12	-	chr12:111158010-111158909				chr12:111158009-111158010;chr12:111158909-111158910		100.00	80.85	83.33	75.00	77.61	52.63	95.24	100.00	92.86	90.91	94.57	83.33	89.89	100.00	89.66	86.11	90.07	73.33	78.26	80.00	87.50	76.92	89.71	81.82	63.64	100.00	91.11	100.00	80.00	73.68	NA	76.32	68.63	84.62	82.76	85.71	79.56	100.00	20.44	0.052223	1.000000
K	coord_cassette	MAPK13	chr6	+	chr6:36104548-36106478	chr6:36104548-36104655;chr6:36104728-36106141;chr6:36106222-36106478		chr6:36104656-36104727;chr6:36106142-36106221			94.00	92.11	88.00	93.02	96.77	92.86	100.00	100.00	92.86	100.00	97.64	98.72	98.44	100.00	97.22	98.23	98.35	100.00	88.00	88.57	91.89	92.42	92.00	94.37	NA	94.29	92.86	100.00	95.56	97.96	92.59	85.00	93.75	93.07	93.18	97.52	93.75	94.15	0.40	0.877857	0.961462
N	alternative_donor		chr19	-	chr19:19746023-19746247	chr19:19746023-19746223		chr19:19746224-19746247	chr19:19746247-19746248		100.00	100.00	100.00	NA	NA	NA	100.00	98.44	100.00	100.00	97.06	100.00	97.73	100.00	100.00	100.00	100.00	85.71	NA	100.00	NA	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	95.83	100.00	100.00	100.00	0.00	0.588515	0.799662
K	intron_retention		chr7	-	chr7:150775180-150775648				chr7:150775179-150775180;chr7:150775648-150775649		3.33	4.88	3.33	0.00	2.27	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.56	0.00	0.00	7.89	6.25	0.00	0.00	2.50	0.00	0.00	0.00	0.00	4.55	0.00	0.00	2.56	6.06	0.00	0.00	0.00	0.898033	1.000000
N	alternative_acceptor	CECR1	chr22	-	chr22:17672701-17684452	chr22:17680170-17684452		chr22:17672701-17680169	chr22:17672700-17672701		0.00	2.44	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	18.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.22	0.00	-1.22	0.325878	0.709013
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134470294-134471684;chr9:134469358-134471684	chr9:134467571-134471684		chr9:134467571-134469357;chr9:134469358-134470293	chr9:134467570-134467571;chr9:134469357-134469358		95.35	94.12	95.92	NA	83.33	NA	100.00	99.00	98.28	99.22	99.07	98.39	99.13	99.00	97.87	99.07	98.93	97.50	NA	96.08	NA	95.92	96.55	95.16	94.12	97.14	97.50	98.04	97.10	100.00	91.67	96.15	NA	92.73	94.93	92.31	96.62	96.61	-0.02	0.816964	0.937008
K	intron_retention	MIIP	chr1	+	chr1:12089199-12089279				chr1:12089198-12089199;chr1:12089279-12089280		10.26	7.14	4.76	NA	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	2.70	NA	8.33	0.00	4.26	3.12	7.14	0.00	4.35	0.00	0.00	6.67	15.62	NA	0.00	2.78	4.83	0.00	-4.83	0.711438	1.000000
N	jcn_only_AA	CUL5,PHRF1	chr11	+	chr11:610348-610596;chr11:610348-610666	chr11:610348-610500		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		100.00	95.45	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	91.30	100.00	95.83	100.00	100.00	100.00	100.00	91.30	100.00	93.75	100.00	100.00	95.00	NA	100.00	100.00	100.00	100.00	100.00	93.10	96.00	83.33	100.00	90.62	95.45	95.00	100.00	5.00	0.146496	0.663989
N	cassette	UQCRH	chr1	+	chr1:46769493-46775826	chr1:46769493-46774772;chr1:46774816-46775826		chr1:46774773-46774815			97.64	95.53	96.47	97.40	98.32	96.94	96.89	100.00	96.55	98.01	98.54	98.46	98.07	96.61	96.63	97.73	98.59	97.83	97.89	97.33	97.87	98.53	97.48	98.65	86.55	74.65	80.88	90.98	88.55	89.40	97.67	97.46	98.51	98.58	98.25	98.54	97.39	97.48	0.09	0.723131	0.902766
K	alternative_acceptor	PPP1R12C	chr19	-	chr19:55604234-55604383	chr19:55604237-55604383		chr19:55604234-55604236	chr19:55604233-55604234		18.10	20.25	25.58	15.38	16.18	23.81	24.56	25.45	15.38	27.27	23.26	21.43	21.52	23.44	22.73	18.18	26.67	17.65	16.18	13.48	19.40	20.00	18.18	21.05	19.72	20.00	19.05	20.00	18.92	20.83	13.58	12.96	16.22	18.87	12.50	18.64	19.98	19.05	-0.93	0.768456	0.914123
K	intron_retention	B4GALT3	chr1	-	chr1:161142122-161143394				chr1:161142121-161142122;chr1:161143394-161143395		4.17	26.67	7.32	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.25	0.00	7.14	11.76	NA	NA	0.00	8.33	0.00	0.00	NA	5.00	5.26	NA	0.00	15.00	0.00	0.00	2.08	2.08	0.810512	1.000000
K	cassette	DAP3	chr1	+	chr1:155697530-155698998	chr1:155697530-155698832;chr1:155698914-155698998		chr1:155698833-155698913			97.30	91.18	97.14	100.00	100.00	92.86	100.00	100.00	97.92	100.00	98.82	100.00	96.83	100.00	100.00	96.77	100.00	100.00	100.00	93.33	97.78	96.23	92.96	91.30	100.00	100.00	96.97	100.00	96.97	96.67	89.19	96.10	95.00	97.50	95.18	94.74	98.41	98.65	0.24	0.825690	0.942251
K	jcn_only_AA	CC2D1B	chr1	-	chr1:52823571-52824002	chr1:52823589-52824002		chr1:52823571-52823588	chr1:52823570-52823571		8.82	0.00	12.82	NA	17.39	NA	10.34	10.87	15.00	9.38	13.33	12.50	11.43	15.69	10.81	12.00	18.92	14.81	NA	17.95	18.75	11.76	13.04	11.54	NA	12.24	12.20	16.67	0.00	11.76	17.39	15.56	18.18	13.89	17.95	10.53	10.88	13.96	3.08	0.396847	0.668817
N	jcn_only_AD	SNRPD3	chr22	+	chr22:24952026-24953624;chr22:24952197-24953624	chr22:24952040-24953624		chr22:24952026-24952039;chr22:24952040-24952196	chr22:24952025-24952026;chr22:24952039-24952040		97.53	98.99	100.00	100.00	96.00	100.00	98.21	100.00	99.21	97.02	100.00	100.00	95.63	100.00	100.00	97.33	97.50	97.41	100.00	100.00	100.00	100.00	99.03	100.00	100.00	100.00	100.00	100.00	98.36	94.52	100.00	100.00	100.00	100.00	97.22	100.00	99.50	100.00	0.50	0.363328	0.657607
K	intron_retention	GAK	chr4	-	chr4:843857-844723				chr4:843856-843857;chr4:844723-844724		4.44	1.79	3.65	2.67	2.60	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	0.00	0.00	0.00	2.16	2.15	2.27	3.92	4.39	4.11	2.79	2.63	1.55	0.00	1.05	2.11	4.62	5.33	1.99	2.23	2.86	4.97	1.89	2.39	0.50	0.923622	1.000000
K	intron_retention	TESK1	chr9	+	chr9:35607670-35607924				chr9:35607669-35607670;chr9:35607924-35607925		2.78	0.00	5.88	0.00	4.17	NA	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	6.25	0.00	3.12	0.00	NA	2.50	4.44	0.00	3.19	0.00	5.80	9.43	6.67	3.95	7.41	3.17	0.00	2.56	2.56	0.799554	1.000000
K	alternative_donor	PPP1R18	chr6	-	chr6:30647167-30654890	chr6:30647167-30652184		chr6:30652185-30654890	chr6:30654890-30654891		94.09	100.00	92.12	100.00	94.64	NA	97.59	99.23	98.80	97.82	98.16	98.86	97.60	99.08	98.96	98.15	98.39	98.47	92.86	96.98	100.00	95.54	97.22	96.71	89.66	96.94	93.83	97.62	96.15	97.30	93.70	95.24	100.00	96.30	96.75	95.18	97.59	96.96	-0.63	0.848839	0.958191
K	intron_retention	BAX	chr19	+	chr19:49464172-49464827				chr19:49464171-49464172;chr19:49464827-49464828		100.00	98.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	alternative_first_exon	PSMD8	chr19	+	chr19:38865523-38866799;chr19:38865602-38866799	chr19:38866150-38866799	chr19:38865176-38865601	chr19:38865649-38866149			1.23	0.00	2.11	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	4.76	0.00	0.00	1.10	0.95	0.97	6.67	1.03	0.00	0.00	0.00	1.10	1.52	1.19	0.00	1.12	1.28	0.75	0.00	0.52	0.52	0.354794	0.544826
K	cassette	SMOX	chr20	+	chr20:4164302-4167916	chr20:4164302-4167389;chr20:4167480-4167916		chr20:4167390-4167479			5.75	0.00	3.92	6.60	4.21	9.59	NA	11.36	6.38	10.64	7.81	16.46	0.00	11.11	6.25	10.45	5.88	20.25	0.00	6.45	3.23	7.14	1.64	6.06	0.00	9.52	2.53	4.41	2.30	7.32	7.95	5.48	0.00	6.02	7.41	11.11	0.00	8.73	8.73	0.000281	0.051522
K	intron_retention	ENSA	chr1	-	chr1:150598165-150602025				chr1:150598164-150598165;chr1:150602025-150602026		96.55	92.68	93.48	88.57	93.15	100.00	95.69	96.43	97.70	93.79	94.82	93.98	96.73	96.00	97.87	96.15	93.10	95.35	92.59	94.59	89.36	93.18	94.44	91.84	74.07	92.59	92.31	97.92	91.00	90.48	91.18	93.75	85.71	86.15	91.55	90.22	92.64	95.30	2.66	0.375071	1.000000
K	jcn_only_AA	MATR3,RAD17	chr5	+	chr5:138658657-138661024;chr5:138658657-138661128	chr5:138658657-138660984		chr5:138660985-138661024;chr5:138661025-138661128	chr5:138661024-138661025;chr5:138661128-138661129		6.60	0.00	10.34	4.00	8.96	0.00	20.00	25.00	18.18	15.24	14.57	15.45	14.62	30.00	16.78	10.29	11.21	10.26	3.70	13.92	9.76	9.47	10.69	4.67	0.00	14.93	12.84	17.65	8.74	6.12	4.35	8.22	0.00	7.69	8.33	4.14	1.85	14.43	12.58	0.115046	0.663989
K	cassette	LYPLA2	chr1	+	chr1:24119251-24119640	chr1:24119251-24119497;chr1:24119530-24119640		chr1:24119498-24119529			100.00	100.00	100.00	NA	100.00	NA	98.53	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	98.86	100.00	100.00	100.00	100.00	100.00	98.25	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.94	NA	100.00	100.00	96.55	99.27	100.00	0.73	0.183639	0.709176
N	jcn_only_AA	NUP85	chr17	+	chr17:73230884-73231194;chr17:73230884-73231215;chr17:73230884-73231207	chr17:73230884-73231210		chr17:73231195-73231207;chr17:73231208-73231210;chr17:73231211-73231215	chr17:73231207-73231208;chr17:73231210-73231211;chr17:73231215-73231216		29.63	14.72	15.91	19.44	11.76	15.00	4.65	NA	0.00	0.00	0.00	NA	0.00	0.00	16.67	0.00	2.56	NA	15.71	11.11	17.24	6.25	12.20	NA	14.52	NA	4.00	9.52	7.25	10.00	14.29	19.35	21.88	11.54	16.67	14.29	14.62	12.70	-1.92	0.801573	0.916010
K	alternative_acceptor	LILRA1,ZNF317	chr19	+	chr19:9269585-9273730	chr19:9269585-9270789		chr19:9270790-9273730	chr19:9273730-9273731		95.65	64.71	100.00	66.67	88.89	NA	100.00	100.00	100.00	100.00	100.00	96.00	90.91	100.00	96.97	93.33	96.15	90.48	63.64	95.83	68.75	93.10	95.12	93.55	NA	100.00	100.00	84.21	88.89	72.22	88.00	84.78	52.63	91.11	95.12	92.68	64.71	97.91	33.20	0.067527	0.584083
N	alternative_donor	IFI6	chr1	-	chr1:27995047-27995759;chr1:27995047-27995810;chr1:27995047-27995755;chr1:27995047-27995743	chr1:27995047-27995731		chr1:27995732-27995743;chr1:27995744-27995755;chr1:27995756-27995759;chr1:27995760-27995810	chr1:27995743-27995744;chr1:27995755-27995756;chr1:27995759-27995760;chr1:27995810-27995811		0.95	0.00	0.34	0.00	0.00	0.76	0.52	0.70	0.89	1.84	1.81	2.01	0.52	0.91	1.03	1.14	1.80	1.60	0.79	0.92	1.24	3.12	0.00	1.93	0.00	0.90	0.54	3.10	0.00	1.15	0.60	0.60	0.53	5.00	0.00	1.76	0.52	0.91	0.39	0.019239	0.271216
N	alternative_acceptor	CLASRP	chr19	+	chr19:45572507-45573201;chr19:45572507-45573279	chr19:45572507-45572893		chr19:45572894-45573201;chr19:45573202-45573279	chr19:45573201-45573202;chr19:45573279-45573280		3.33	1.78	3.61	2.04	2.13	1.60	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	3.45	0.00	5.56	0.00	0.98	2.70	1.81	4.76	1.35	1.89	0.55	3.64	2.17	5.88	4.35	4.62	1.45	1.69	0.68	4.08	1.52	2.97	0.83	2.08	1.25	0.690835	0.883019
N	jcn_only_AA	RNH1	chr11	-	chr11:502250-504426;chr11:503613-504426	chr11:502182-504426		chr11:502182-502249;chr11:502250-503612	chr11:502181-502182;chr11:502249-502250		NA	0.00	NA	NA	50.00	NA	10.00	13.33	NA	NA	25.00	NA	37.50	24.14	NA	41.18	100.00	32.14	31.58	NA	NA	38.89	39.02	NA	38.46	23.08	NA	34.62	31.25	42.86	27.27	NA	NA	38.10	40.74	37.84	31.58	23.61	-7.97	0.859902	0.944239
N	alternative_last_exon	CORO1B	chr11	-	chr11:67205973-67209898;chr11:67207911-67209898	chr11:67209560-67209898	chr11:67205519-67205972;chr11:67207806-67207910	chr11:67209437-67209559			100.00	100.00	100.00	90.91	98.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	97.89	98.82	85.11	98.55	100.00	100.00	100.00	100.00	0.00	0.358748	0.535374
K	intron_retention	SLC25A11	chr17	-	chr17:4841549-4841633				chr17:4841548-4841549;chr17:4841633-4841634		2.99	0.00	2.73	0.00	3.17	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	2.04	2.99	0.00	1.45	3.57	0.00	0.00	1.33	0.00	1.43	0.00	4.55	9.43	0.00	0.00	3.33	2.38	0.00	1.02	1.02	0.411744	1.000000
N	alternative_acceptor	VCP	chr9	-	chr9:35057521-35059060;chr9:35057525-35059060;chr9:35057551-35059060	chr9:35057528-35059060		chr9:35057521-35057524;chr9:35057525-35057527;chr9:35057528-35057550	chr9:35057520-35057521;chr9:35057524-35057525;chr9:35057527-35057528		98.70	98.85	98.82	100.00	98.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	99.02	97.83	100.00	98.63	100.00	99.15	98.85	100.00	100.00	100.00	95.00	98.13	94.51	99.32	99.21	99.38	100.00	98.93	-1.07	0.447322	0.755217
K	intron_retention	HGS	chr17	+	chr17:79663030-79663386				chr17:79663029-79663030;chr17:79663386-79663387		11.39	9.76	11.90	10.00	18.75	NA	0.00	0.00	5.00	0.98	3.12	0.00	5.36	0.00	5.56	2.04	2.60	0.00	0.00	10.53	4.17	11.54	15.07	16.13	35.00	10.45	14.67	7.69	17.95	8.33	11.32	14.94	6.25	10.84	10.00	13.04	5.80	10.49	4.68	0.981313	1.000000
N	cassette	SLC11A1	chr2	+	chr2:219247826-219251357;chr2:219247099-219251357;chr2:219249089-219251357	chr2:219247099-219249869,chr2:219247826-219249869,chr2:219249089-219249869;chr2:219249990-219251357		chr2:219249870-219249989			99.68	96.49	99.38	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	98.57	100.00	98.57	100.00	96.03	100.00	94.59	96.92	100.00	100.00	98.94	100.00	98.31	97.50	100.00	100.00	100.00	100.00	100.00	97.89	100.00	100.00	99.84	-0.16	0.730569	0.905819
K	alternative_donor	RPUSD3	chr3	-	chr3:9879892-9880715	chr3:9879892-9880668		chr3:9880669-9880715	chr3:9880715-9880716		0.00	5.56	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	3.12	NA	0.00	0.00	0.00	NA	2.86	NA	3.85	0.00	0.00	NA	6.67	NA	3.85	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.23	NA	0.00	0.00	3.54	0.00	-3.54	0.031121	0.340056
N	alternative_donor	MYO18A	chr17	-	chr17:27401933-27406744;chr17:27401933-27404045	chr17:27401933-27409333		chr17:27404046-27406744;chr17:27406745-27409333	chr17:27406744-27406745;chr17:27409333-27409334		96.00	94.55	94.12	NA	96.88	NA	93.75	92.86	95.45	92.86	91.67	100.00	90.91	88.24	92.00	93.75	91.43	NA	94.74	97.30	100.00	96.77	96.55	96.67	95.56	93.18	94.29	93.75	97.06	100.00	98.15	97.59	97.06	90.00	94.59	95.35	94.64	94.59	-0.05	0.936861	0.984606
K	cassette	OXA1L	chr14	+	chr14:23237381-23239401	chr14:23237381-23238999;chr14:23239144-23239401		chr14:23239000-23239143			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	99.33	100.00	100.00	100.00	100.00	97.83	99.24	100.00	NA	100.00	100.00	100.00	98.48	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	USP16	chr21	+	chr21:30422500-30426386	chr21:30422500-30426122;chr21:30426280-30426386		chr21:30426123-30426279			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	TUBGCP2	chr10	-	chr10:135101783-135102343	chr10:135101814-135102343		chr10:135101783-135101813	chr10:135101782-135101783		100.00	100.00	90.91	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	88.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	CD163L1	chr12	-	chr12:7519928-7521528	chr12:7519928-7520653;chr12:7520794-7521528		chr12:7520654-7520793			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	59.92	84.38	100.00	82.93	78.00	74.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.729708	0.905819
N	jcn_only_AD		chr5	-	chr5:1330499-1331917	chr5:1330499-1331913		chr5:1331914-1331917	chr5:1331917-1331918		94.87	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.201312	0.657607
N	jcn_only_AA	ARRDC1	chr9	+	chr9:140509453-140509548;chr9:140509453-140509525	chr9:140509453-140509505		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		0.00	0.00	0.00	13.04	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	NA	1.89	0.00	0.00	0.00	2.63	0.00	4.65	0.00	8.33	0.00	0.00	0.00	15.79	0.00	3.33	0.00	5.56	14.29	0.94	0.00	-0.94	0.732657	0.881383
N	jcn_only_AA	BTN3A1	chr6	+	chr6:42987105-42988434	chr6:42987105-42988404		chr6:42988405-42988434	chr6:42988434-42988435		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	CD151	chr11	+	chr11:836443-836768				chr11:836442-836443;chr11:836768-836769		0.00	0.00	5.75	6.38	5.41	11.11	0.00	0.00	0.00	0.00	0.45	0.00	0.26	0.82	0.00	0.53	1.11	0.00	2.17	0.00	3.74	3.45	5.37	2.94	9.80	2.38	4.17	2.46	4.27	2.53	2.08	4.69	4.84	2.86	3.66	1.92	1.21	0.41	-0.80	0.711390	1.000000
N	alternative_acceptor		chr7	+	chr7:128588176-128588283;chr7:128588176-128588243	chr7:128588176-128588263		chr7:128588244-128588263;chr7:128588264-128588283	chr7:128588263-128588264;chr7:128588283-128588284		100.00	100.00	100.00	NA	93.33	NA	90.48	94.12	92.59	93.10	92.31	94.55	93.51	90.79	93.15	94.23	95.19	90.10	97.62	94.74	93.75	94.03	93.41	91.30	100.00	91.00	100.00	93.62	92.79	93.84	89.39	92.31	95.24	92.21	96.10	92.95	96.43	92.56	-3.87	0.233234	0.685872
K	intron_retention	PSMC5	chr17	+	chr17:61904875-61905497				chr17:61904874-61904875;chr17:61905497-61905498		0.00	6.25	7.32	NA	4.17	NA	0.00	0.00	0.00	0.00	0.96	0.00	0.00	0.00	4.55	1.43	0.00	0.00	0.00	0.00	0.00	3.70	1.69	6.67	0.00	7.69	8.82	3.23	3.03	0.00	0.00	6.25	0.00	12.00	3.03	6.06	0.00	0.00	0.00	0.770511	1.000000
N	intron_retention		chr3	-	chr3:107766140-107776323				chr3:107766139-107766140;chr3:107776323-107776324		30.77	36.84	50.00	NA	NA	56.25	NA	3.33	0.00	NA	NA	NA	0.00	3.70	9.09	NA	0.00	0.00	42.31	18.52	28.57	NA	NA	50.00	76.67	23.53	20.83	NA	36.36	22.22	26.67	18.75	30.00	63.64	NA	36.84	36.84	21.02	-15.82	0.337501	1.000000
N	alternative_acceptor	ADCY7	chr16	+	chr16:50349050-50349269	chr16:50349050-50349251		chr16:50349252-50349269	chr16:50349269-50349270		3.03	5.26	5.41	NA	0.00	NA	1.46	1.36	0.00	0.00	0.00	4.17	1.18	1.90	0.00	0.00	0.00	2.50	0.00	2.63	NA	6.25	3.17	0.00	0.00	1.71	5.26	0.00	0.00	0.00	5.71	7.14	5.88	0.00	1.30	2.67	1.32	2.26	0.94	0.740935	0.903518
K	intron_retention	ARHGAP4	chrX	-	chrX:153175859-153175959				chrX:153175858-153175859;chrX:153175959-153175960		15.69	12.41	18.52	12.90	18.42	8.70	1.69	0.00	0.00	0.00	2.07	0.00	3.33	4.00	9.09	1.33	1.20	1.37	17.50	15.62	17.14	13.04	20.79	14.89	21.35	9.52	10.94	14.81	20.00	15.56	9.09	16.00	16.47	17.65	9.68	6.33	14.44	9.30	-5.13	0.760734	1.000000
K	intron_retention		chr13	-	chr13:45911524-45911601				chr13:45911523-45911524;chr13:45911601-45911602		57.58	66.67	53.33	55.10	52.27	54.43	46.15	44.44	42.86	31.58	41.67	25.00	NA	47.06	41.67	46.67	NA	53.33	58.33	65.38	53.33	57.14	53.12	60.00	53.57	45.45	50.00	70.59	50.00	47.50	78.79	60.00	70.69	64.71	54.17	62.79	58.33	52.32	-6.01	0.978051	1.000000
K	intron_retention	UNC50	chr2	+	chr2:99232997-99234630				chr2:99232996-99232997;chr2:99234630-99234631		2.00	5.77	5.48	3.03	1.41	3.12	0.00	2.78	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	2.08	1.64	3.33	0.00	0.00	NA	4.35	6.06	0.00	1.37	0.00	0.00	2.86	4.35	2.94	2.17	8.11	3.70	2.04	-1.66	0.488562	1.000000
K	cassette	CAPG	chr2	-	chr2:85629282-85641106	chr2:85629282-85640265;chr2:85640368-85641106		chr2:85640266-85640367			0.00	NA	0.00	10.00	NA	0.00	0.80	2.30	0.00	2.15	1.02	1.01	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	4.76	4.00	4.88	0.00	0.00	0.00	0.00	3.23	1.61	0.00	0.00	0.00	0.608348	0.853757
N	jcn_only_AA	AES	chr19	-	chr19:3053457-3056309;chr19:3055939-3056309	chr19:3055725-3056309		chr19:3053457-3055724;chr19:3055725-3055938	chr19:3053456-3053457;chr19:3055724-3055725		97.47	95.90	100.00	100.00	94.74	86.76	100.00	98.64	97.45	100.00	99.01	98.46	98.85	97.46	98.65	98.65	100.00	98.21	90.30	97.44	93.63	100.00	96.53	100.00	85.83	98.51	97.26	100.00	100.00	96.20	96.24	97.04	91.34	100.00	96.68	98.81	93.62	97.47	3.84	0.140981	0.663989
K	intron_retention	STXBP2	chr19	+	chr19:7712134-7712610				chr19:7712133-7712134;chr19:7712610-7712611		72.00	78.57	91.67	80.65	87.50	73.02	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	76.74	85.71	80.00	NA	85.00	90.91	82.05	100.00	80.95	NA	88.89	85.71	90.48	84.21	78.85	NA	75.00	85.71	78.71	88.09	9.39	0.433430	1.000000
K	intron_retention		chr8	-	chr8:21997762-21998137				chr8:21997761-21997762;chr8:21998137-21998138		3.33	3.17	0.00	NA	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	3.70	NA	0.00	NA	1.79	NA	23.08	0.00	0.00	NA	6.00	NA	NA	0.00	0.00	0.00	4.00	0.00	2.19	0.00	-2.19	0.599971	1.000000
K	intron_retention	EXOC7	chr17	-	chr17:74080221-74080328				chr17:74080220-74080221;chr17:74080328-74080329		1.89	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	2.86	0.00	0.00	0.00	3.03	0.00	0.00	0.00	5.00	2.99	3.23	2.86	2.08	0.00	0.00	0.94	0.94	0.791424	1.000000
K	intron_retention	ADM	chr11	+	chr11:10328196-10328316				chr11:10328195-10328196;chr11:10328316-10328317		97.35	100.00	96.29	97.30	100.00	97.34	100.00	98.40	98.66	95.45	100.00	96.59	95.83	98.59	98.88	98.22	100.00	96.19	100.00	96.01	96.51	95.81	97.77	97.13	100.00	97.54	97.46	97.15	100.00	95.41	97.09	96.15	97.67	94.09	97.59	96.17	100.00	97.44	-2.56	0.279075	1.000000
K	intron_retention	GTF2F1	chr19	-	chr19:6381627-6381707				chr19:6381626-6381627;chr19:6381707-6381708		2.44	3.53	3.70	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.51	0.00	0.00	0.00	0.00	2.27	6.09	3.28	0.00	6.59	2.04	0.00	1.19	3.37	1.56	1.20	1.05	5.45	7.14	1.61	4.23	4.11	1.61	0.81	1.81	1.01	0.615438	1.000000
K	jcn_only_AA	TPTEP1	chr22	+	chr22:17092784-17094966	chr22:17092784-17094874		chr22:17094875-17094966	chr22:17094966-17094967		21.43	NA	18.75	NA	41.67	NA	24.00	33.33	36.84	21.05	21.05	36.84	13.33	16.67	15.38	13.33	18.18	NA	0.00	27.27	NA	30.00	13.33	NA	NA	NA	30.77	20.00	NA	NA	NA	31.25	18.18	14.29	15.79	15.79	15.75	24.35	8.60	0.140814	0.663989
K	alternative_acceptor	IFFO1	chr12	-	chr12:6657324-6657590	chr12:6657327-6657590		chr12:6657324-6657326	chr12:6657323-6657324		61.29	67.61	78.12	NA	72.73	NA	63.89	50.00	78.57	62.50	72.55	NA	64.06	56.67	55.56	75.00	69.57	NA	55.56	70.59	64.00	NA	73.08	54.55	60.66	72.73	63.89	69.57	71.76	73.33	60.00	60.71	62.50	61.54	70.91	55.56	63.20	60.64	-2.55	0.900590	0.965081
K	intron_retention	RPS9	chr19	+	chr19:54710331-54710420				chr19:54710330-54710331;chr19:54710420-54710421		29.79	18.67	37.97	18.80	14.86	11.67	14.29	23.91	5.75	29.55	31.58	33.33	NA	19.44	14.29	20.37	21.05	42.86	15.09	33.93	21.79	36.99	25.00	37.04	3.92	27.27	20.00	31.58	29.17	28.92	28.30	20.45	19.81	35.71	38.24	33.08	15.09	27.79	12.70	0.024670	1.000000
N	alternative_acceptor	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144853280-144854164;chr1:144852500-144854164;chr1:144853271-144854164	chr1:144852444-144854164		chr1:144852444-144852499;chr1:144852500-144853270;chr1:144853271-144853279	chr1:144852443-144852444;chr1:144852499-144852500;chr1:144853270-144853271		6.56	0.00	11.22	7.89	0.00	9.09	10.00	6.00	8.33	9.26	6.67	14.75	0.00	13.73	15.29	12.90	18.18	12.28	0.00	8.33	7.69	4.40	7.14	7.19	NA	6.60	12.26	10.64	7.41	10.08	10.38	10.98	31.58	13.57	9.80	11.76	0.00	7.46	7.46	0.965780	0.991031
N	alternative_donor	UBALD2	chr17	+	chr17:74261707-74261987;chr17:74261620-74261987	chr17:74261485-74261987		chr17:74261485-74261619;chr17:74261620-74261706	chr17:74261484-74261485;chr17:74261619-74261620		0.00	14.29	3.85	0.00	0.00	12.50	0.00	0.00	6.45	6.25	5.00	8.11	7.14	2.63	4.55	6.67	0.00	2.56	14.29	7.14	3.33	0.00	3.85	11.76	NA	0.00	0.00	0.00	3.57	8.70	7.69	0.00	11.76	0.00	0.00	0.00	11.76	1.31	-10.45	0.074805	0.462741
N	jcn_only_AA	DYNLL1	chr12	+	chr12:120934357-120935875;chr12:120934357-120935852;chr12:120934357-120935637	chr12:120934357-120935922		chr12:120935638-120935852;chr12:120935853-120935875;chr12:120935876-120935922	chr12:120935852-120935853;chr12:120935875-120935876;chr12:120935922-120935923		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.98	4.63	6.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.67	4.49	4.74	0.00	0.00	0.00	0.00	0.00	0.00	0.944226	0.981281
K	jcn_only_AD	BECN1	chr17	-	chr17:40970434-40971565	chr17:40970434-40970561		chr17:40970562-40971565	chr17:40971565-40971566		95.65	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.30	100.00	100.00	96.61	95.65	94.44	94.92	98.15	NA	98.28	98.70	96.88	98.21	100.00	93.48	95.29	NA	100.00	95.24	96.91	100.00	97.44	-2.56	0.052720	0.518354
K	intron_retention	CALM3	chr19	+	chr19:47111598-47111738				chr19:47111597-47111598;chr19:47111738-47111739		3.16	0.00	21.49	0.90	0.00	1.45	0.00	0.00	2.21	0.00	0.00	0.00	0.00	0.61	4.32	0.00	0.00	0.00	0.22	3.17	5.83	0.00	0.61	1.39	0.00	2.94	14.71	0.37	0.00	2.44	1.77	9.27	0.38	0.70	0.74	2.89	0.00	2.35	2.35	0.067230	1.000000
N	jcn_only_AA	SNHG1	chr11	-	chr11:62620139-62620282;chr11:62620131-62620282	chr11:62620154-62620282		chr11:62620131-62620138;chr11:62620139-62620153	chr11:62620130-62620131;chr11:62620138-62620139		100.00	100.00	93.75	100.00	88.46	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	86.67	100.00	88.24	92.16	84.00	100.00	100.00	95.45	88.89	97.14	100.00	100.00	83.33	100.00	87.88	92.31	90.48	100.00	100.00	0.00	0.391002	0.663989
N	jcn_only_AD	SUMF2	chr7	+	chr7:56142446-56144526;chr7:56142430-56144526	chr7:56142333-56144526		chr7:56142333-56142429;chr7:56142430-56142445	chr7:56142332-56142333;chr7:56142429-56142430		0.00	1.30	0.00	5.88	2.04	0.00	1.88	4.35	1.79	4.49	1.92	5.83	1.84	0.00	2.22	1.22	0.97	3.90	0.00	2.86	0.00	5.17	4.71	1.39	4.17	3.85	1.49	5.41	4.69	4.08	2.33	4.08	6.98	4.29	5.49	2.96	1.86	2.59	0.73	0.724038	0.857490
K	cassette	IFT52	chr20	+	chr20:42265894-42275575	chr20:42265894-42271118;chr20:42271265-42275575		chr20:42271119-42271264			93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	0.00	0.373901	0.709176
N	alternative_donor	RND3	chr2	-	chr2:32264396-32264493	chr2:32264396-32264489		chr2:32264490-32264493	chr2:32264493-32264494		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	0.00	0.605945	0.814273
K	intron_retention	GADD45G	chr9	+	chr9:92220796-92220883				chr9:92220795-92220796;chr9:92220883-92220884		2.90	5.45	8.33	5.34	3.64	4.59	8.33	0.00	0.89	0.61	0.00	1.04	NA	0.00	1.19	0.67	0.00	0.73	7.50	7.79	5.56	4.57	3.33	4.65	8.79	5.56	0.00	4.07	4.08	3.28	14.36	11.96	21.74	6.78	7.14	4.85	8.33	4.23	-4.10	0.718143	1.000000
K	intron_retention	LSM8	chr7	+	chr7:117824309-117825707				chr7:117824308-117824309;chr7:117825707-117825708		0.00	6.49	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	0.00	1.03	0.00	2.44	4.35	1.54	0.00	1.45	4.00	0.00	0.00	0.00	0.00	1.37	1.39	8.33	3.12	5.56	2.86	1.96	0.00	1.77	0.00	-1.77	0.777668	1.000000
K	intron_retention		chr19	+	chr19:10395705-10395790				chr19:10395704-10395705;chr19:10395790-10395791		5.62	10.87	6.53	5.58	7.94	6.96	0.83	1.26	1.20	1.73	1.94	1.69	4.35	1.58	1.86	1.95	2.53	1.79	0.00	6.09	3.60	4.50	6.58	4.79	0.00	2.68	4.63	3.93	4.24	3.43	8.16	8.46	11.11	5.74	5.44	5.48	2.59	4.15	1.56	0.857367	1.000000
N	jcn_only_AA	RTN2	chr19	-	chr19:45989366-45991728	chr19:45989372-45991728		chr19:45989366-45989371	chr19:45989365-45989366		100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	EHBP1L1,SLC39A13	chr11	+	chr11:65359345-65359472;chr11:65359345-65359446	chr11:65359345-65359430		chr11:65359431-65359446;chr11:65359447-65359472	chr11:65359446-65359447;chr11:65359472-65359473		0.98	1.80	1.80	1.97	1.63	1.50	2.61	0.00	1.44	0.00	1.52	6.25	0.00	0.41	1.63	1.82	1.01	0.00	1.02	1.13	1.60	3.85	2.54	0.00	0.74	2.50	1.65	1.79	1.32	2.10	1.21	1.75	0.90	1.18	1.90	1.72	0.96	1.05	0.09	0.788865	0.908316
N	jcn_only_AA	PHKB	chr16	+	chr16:2820467-2820610;chr16:2820467-2820607	chr16:2820467-2820604		chr16:2820605-2820607;chr16:2820608-2820610	chr16:2820607-2820608;chr16:2820610-2820611		97.71	98.78	98.96	98.53	99.06	99.14	100.00	96.00	95.60	97.26	95.74	100.00	97.92	100.00	98.31	98.75	99.19	96.43	94.96	98.95	100.00	99.03	97.89	97.96	95.68	96.04	94.55	100.00	96.88	97.20	97.86	97.14	97.96	100.00	98.55	97.44	97.94	97.78	-0.16	0.839404	0.936970
K	intron_retention	MEI1	chr22	+	chr22:42191852-42195257				chr22:42191851-42191852;chr22:42195257-42195258		2.13	0.00	2.15	3.23	2.86	3.70	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	NA	NA	NA	1.59	4.08	1.67	0.00	5.00	NA	0.00	0.00	1.59	NA	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	1.06	1.06	0.492501	1.000000
K	cassette	CD164	chr6	-	chr6:109690221-109697276	chr6:109690221-109691613;chr6:109691671-109697276		chr6:109691614-109691670			89.29	83.05	91.55	94.74	89.36	87.06	92.98	92.46	93.70	94.67	93.78	94.43	93.12	92.59	93.43	92.84	93.13	92.98	90.91	88.00	88.94	90.43	86.73	91.96	80.00	89.94	93.44	93.67	91.67	89.51	83.14	86.67	91.11	87.15	87.57	88.93	91.01	89.62	-1.39	0.798537	0.936947
K	cassette	ZNHIT1	chr7	+	chr7:100861499-100865884	chr7:100861499-100861599;chr7:100865078-100865884		chr7:100861600-100865077			4.88	2.20	5.36	0.00	1.72	0.00	0.00	0.00	4.55	0.00	4.00	0.00	2.04	0.00	3.45	2.38	2.38	0.00	1.32	3.23	1.59	3.85	3.66	4.35	1.45	3.33	3.57	3.70	1.20	0.00	4.00	4.65	1.56	5.00	5.41	2.70	1.50	3.28	1.78	0.250677	0.709176
N	jcn_only_AA	SARS	chr1	+	chr1:109756751-109757168;chr1:109756751-109766578;chr1:109756751-109766603	chr1:109756751-109766599		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		97.56	100.00	96.84	94.12	91.18	NA	92.36	95.65	93.12	92.08	92.66	95.92	93.81	90.91	92.68	83.64	93.75	92.50	100.00	95.35	87.50	97.78	94.29	97.22	100.00	100.00	95.08	97.96	95.31	100.00	100.00	97.92	90.00	98.33	94.38	98.46	96.91	96.61	-0.30	0.817422	0.926775
K	cassette	RFXANK	chr19	+	chr19:19307856-19308329	chr19:19307856-19307994;chr19:19308061-19308329		chr19:19307995-19308060			61.11	67.42	65.12	68.00	69.84	60.87	94.74	89.47	89.13	91.30	83.87	87.50	86.54	83.33	86.96	92.00	86.36	92.31	60.47	56.82	79.22	58.33	52.38	NA	68.25	90.00	70.18	77.78	80.00	68.18	63.16	69.57	52.94	73.68	61.11	75.00	67.84	73.25	5.41	0.806870	0.936947
K	cassette	ITGAX	chr16	+	chr16:31383106-31383917	chr16:31383106-31383698;chr16:31383831-31383917		chr16:31383699-31383830			96.15	85.07	92.63	85.29	93.33	92.86	100.00	100.00	100.00	98.35	98.69	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	93.22	92.00	91.04	100.00	96.25	97.37	95.30	95.45	95.52	100.00	93.94	92.31	95.61	94.55	95.62	100.00	100.00	0.00	0.387055	0.709410
K	intron_retention	ARFRP1	chr20	-	chr20:62331883-62331953				chr20:62331882-62331883;chr20:62331953-62331954		9.52	7.69	20.97	8.33	10.53	5.62	0.00	0.00	1.83	2.27	2.27	0.00	0.00	0.00	4.35	0.00	3.57	3.03	5.26	3.03	8.47	15.62	15.15	6.38	0.00	5.88	11.63	5.08	6.06	3.00	3.85	6.38	3.85	8.00	9.38	4.35	1.93	3.44	1.51	0.959820	1.000000
N	alternative_acceptor	VAC14	chr16	-	chr16:70721992-70726723;chr16:70721994-70726723;chr16:70721988-70726723;chr16:70725990-70726723	chr16:70725953-70726723		chr16:70721988-70721991;chr16:70721992-70721993;chr16:70721994-70725952;chr16:70725953-70725989	chr16:70721987-70721988;chr16:70721991-70721992;chr16:70721993-70721994;chr16:70725952-70725953		14.29	8.05	14.29	6.38	7.87	11.32	25.58	33.33	16.00	28.85	24.29	25.00	23.81	13.04	14.29	33.33	29.63	21.05	7.55	18.92	5.88	16.22	18.52	19.35	7.69	21.05	16.22	13.56	14.47	20.93	16.67	13.64	6.00	30.95	14.52	35.56	7.87	17.80	9.93	0.206503	0.669309
K	intron_retention		chr3	-	chr3:127294653-127294782				chr3:127294652-127294653;chr3:127294782-127294783		9.30	8.57	13.33	4.35	3.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	2.22	0.42	0.00	0.00	7.69	9.09	5.00	4.49	4.94	7.81	18.52	7.14	0.00	1.32	6.02	1.59	8.33	10.00	3.45	5.31	4.76	5.30	5.57	7.73	2.16	0.832578	1.000000
K	alternative_last_exon	ENTPD4	chr8	-	chr8:23291126-23291829;chr8:23261587-23291829	chr8:23290668-23291829	chr8:23261467-23261586	chr8:23286665-23290667			89.66	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.77	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.535374
N	alternative_donor	ATF7	chr12	-	chr12:7531895-7548883	chr12:7531895-7548690		chr12:7548691-7548883	chr12:7548883-7548884		92.39	100.00	92.86	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	98.51	100.00	NA	100.00	100.00	100.00	100.00	93.48	NA	100.00	100.00	96.92	100.00	93.33	91.67	100.00	100.00	100.00	100.00	87.50	NA	100.00	97.59	95.37	100.00	93.48	-6.52	0.086072	0.475124
K	intron_retention		chr9	+	chr9:90341314-90342508				chr9:90341313-90341314;chr9:90342508-90342509		2.62	0.00	4.94	4.12	2.02	8.33	0.00	0.57	0.60	1.89	0.32	0.57	0.85	0.84	1.47	1.64	1.22	0.72	0.00	1.81	1.06	4.25	4.27	5.53	0.00	2.26	2.39	3.35	3.46	5.75	1.24	2.56	0.00	6.54	3.25	10.32	0.00	1.52	1.52	0.014819	1.000000
N	alternative_acceptor	LAIR1	chr19	-	chr19:54872851-54875901;chr19:54872814-54875901;chr19:54874623-54875901	chr19:54872817-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		69.25	83.87	71.68	72.73	75.00	NA	71.74	71.27	72.63	75.38	74.20	74.53	73.18	72.71	68.37	73.62	75.32	72.46	86.67	69.50	68.35	69.77	73.33	64.29	100.00	70.86	71.43	72.86	69.62	69.49	68.39	70.53	66.67	73.73	73.08	70.51	78.53	70.18	-8.34	0.101803	0.598353
N	alternative_acceptor	DOCK10	chr2	-	chr2:225635056-225635261	chr2:225635067-225635261		chr2:225635056-225635066	chr2:225635055-225635056		100.00	88.00	96.30	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.50	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	93.75	100.00	100.00	96.88	98.36	100.00	100.00	100.00	0.00	0.654446	0.874938
K	intron_retention	SUN2	chr22	-	chr22:39136438-39137011				chr22:39136437-39136438;chr22:39137011-39137012		15.00	13.64	5.32	NA	NA	97.56	1.20	6.49	9.84	3.33	1.96	6.25	2.56	6.85	12.86	3.39	0.00	11.11	NA	16.90	8.33	11.76	8.51	31.03	0.00	39.06	13.33	34.78	7.14	76.47	33.33	17.65	NA	14.29	7.14	41.82	1.88	15.95	14.07	0.176484	1.000000
K	intron_retention	SIRT6	chr19	-	chr19:4174944-4175024				chr19:4174943-4174944;chr19:4175024-4175025		6.06	6.67	3.33	0.00	2.63	6.67	0.00	0.00	0.00	4.76	0.00	0.00	4.17	0.00	0.00	4.17	4.17	NA	6.45	8.33	9.09	0.00	0.00	0.00	0.00	0.00	10.71	0.00	0.00	0.00	6.67	7.69	3.45	0.00	0.00	0.00	3.81	3.03	-0.78	0.973479	1.000000
K	intron_retention		chr16	+	chr16:89967203-89970525				chr16:89967202-89967203;chr16:89970525-89970526		2.94	5.56	7.92	5.97	4.07	2.22	0.00	0.00	1.37	0.93	0.77	0.00	0.00	1.64	3.57	1.39	1.32	0.00	3.66	7.14	3.61	1.85	4.55	6.12	2.70	3.17	3.30	3.70	3.75	3.08	5.71	3.79	3.09	5.88	4.71	7.96	2.90	3.05	0.16	0.832867	1.000000
K	intron_retention	ACOT8	chr20	-	chr20:44470596-44472165				chr20:44470595-44470596;chr20:44472165-44472166		29.41	10.99	18.75	6.67	8.89	9.76	10.00	NA	7.69	NA	0.00	0.00	7.14	9.09	0.00	NA	8.33	NA	6.19	7.14	6.25	NA	11.11	NA	5.95	13.33	17.24	NA	11.11	8.33	12.50	18.52	5.26	NA	8.33	16.67	6.67	12.50	5.83	0.516432	1.000000
K	intron_retention	HMHA1	chr19	+	chr19:1083066-1083141				chr19:1083065-1083066;chr19:1083141-1083142		2.78	5.62	1.64	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	7.14	1.98	9.52	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	5.56	0.00	3.03	3.03	0.53	0.00	-0.53	0.601406	1.000000
N	jcn_only_AA	AGAP3	chr7	+	chr7:150825772-150827290;chr7:150825772-150828158	chr7:150825772-150831486		chr7:150827291-150828158;chr7:150828159-150831486	chr7:150828158-150828159;chr7:150831486-150831487		100.00	100.00	95.04	84.62	95.24	NA	98.04	91.89	96.08	89.83	92.00	100.00	96.30	100.00	95.00	88.42	93.90	84.62	90.91	94.87	98.08	95.83	97.90	100.00	100.00	93.33	98.63	93.75	97.85	94.12	100.00	97.67	100.00	87.50	93.55	94.64	99.02	97.44	-1.59	0.693102	0.864632
K	intron_retention	GIGYF1	chr7	-	chr7:100279617-100279694				chr7:100279616-100279617;chr7:100279694-100279695		13.64	0.00	7.69	NA	NA	NA	0.00	0.00	4.76	0.00	0.00	NA	4.35	NA	3.45	0.00	0.00	NA	9.09	12.00	9.09	8.33	14.29	0.00	9.52	4.76	6.98	10.00	10.00	NA	16.67	5.26	7.14	13.64	0.00	12.12	5.74	12.00	6.26	0.611592	1.000000
N	coord_cassette	SAT2	chr17	-	chr17:7529933-7530870	chr17:7529933-7530070;chr17:7530112-7530260;chr17:7530363-7530460;chr17:7530545-7530870		chr17:7530071-7530111;chr17:7530261-7530362;chr17:7530461-7530544			100.00	83.33	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	NA	NA	NA	100.00	100.00	0.00	0.190984	0.643829
N	alternative_acceptor	TRPM2	chr21	+	chr21:45774620-45783996	chr21:45774620-45776105		chr21:45776106-45783996	chr21:45783996-45783997		4.35	5.71	2.86	NA	NA	NA	2.22	4.55	NA	10.00	6.67	NA	1.89	3.85	NA	13.33	8.00	NA	23.53	7.69	NA	NA	3.85	6.25	5.56	9.09	7.69	NA	NA	NA	NA	NA	17.65	3.45	3.77	2.86	5.63	4.55	-1.08	0.392947	0.710846
N	alternative_donor	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341165-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341224-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		12.21	14.29	10.42	12.80	11.54	7.41	11.52	10.15	10.01	11.38	10.64	11.57	11.25	10.64	12.24	13.14	11.32	14.26	14.63	12.35	12.54	9.84	10.39	10.02	9.09	8.78	9.39	11.15	8.77	10.61	10.46	11.10	15.91	12.54	12.00	15.17	12.90	10.55	-2.35	0.129274	0.540946
K	intron_retention		chr19	-	chr19:50364623-50364705				chr19:50364622-50364623;chr19:50364705-50364706		3.23	5.94	11.11	3.45	2.08	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	3.49	0.00	3.23	0.00	9.52	0.00	2.60	0.00	5.00	NA	0.00	0.00	6.45	8.70	3.16	4.17	9.09	5.00	2.88	0.00	-2.88	0.985157	1.000000
N	alternative_acceptor	CDK16	chrX	+	chrX:47088044-47088129;chrX:47088044-47088418;chrX:47088044-47088133	chrX:47088044-47088104		chrX:47088105-47088129;chrX:47088130-47088133;chrX:47088134-47088418	chrX:47088129-47088130;chrX:47088133-47088134;chrX:47088418-47088419		4.35	0.00	2.50	0.00	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	5.71	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.08	5.17	4.11	1.59	2.56	2.94	2.56	0.00	2.17	2.17	0.106211	0.598353
K	jcn_only_AA	TXN2	chr22	-	chr22:36876835-36877610;chr22:36876796-36877610	chr22:36876885-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		64.29	92.50	90.91	NA	92.00	NA	77.11	100.00	86.96	68.18	70.29	66.67	78.64	78.95	80.95	84.09	77.94	100.00	86.67	93.75	75.00	90.00	88.89	NA	100.00	100.00	93.75	85.71	76.67	90.91	63.64	92.31	86.36	100.00	93.75	89.47	86.52	86.35	-0.17	0.669602	0.853918
K	jcn_only_AA	ATP5B	chr12	-	chr12:57036469-57037186	chr12:57036616-57037186		chr12:57036469-57036615	chr12:57036468-57036469		98.57	99.40	97.93	95.83	96.83	90.62	98.93	98.43	99.25	97.59	98.80	98.35	98.74	98.16	98.33	98.77	98.90	98.84	95.59	98.99	98.12	96.23	95.21	95.65	100.00	97.70	100.00	93.92	93.85	93.04	97.81	97.59	93.94	95.60	95.43	96.65	98.84	98.30	-0.54	0.633067	0.838192
K	intron_retention		chr3	-	chr3:9801435-9802339				chr3:9801434-9801435;chr3:9802339-9802340		4.62	1.34	7.50	0.00	1.09	1.96	0.36	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.80	0.00	1.33	3.12	0.00	0.00	2.90	0.00	1.29	0.00	0.00	0.00	2.12	0.00	0.00	0.00	0.71	0.00	0.93	0.00	1.06	0.00	-1.06	0.985072	1.000000
K	alternative_acceptor	COG4	chr16	-	chr16:70530283-70531123	chr16:70530335-70531123		chr16:70530283-70530334	chr16:70530282-70530283		84.21	82.14	87.18	NA	86.67	NA	100.00	NA	100.00	NA	100.00	NA	94.12	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	85.71	NA	NA	100.00	84.00	NA	88.24	NA	84.62	89.29	72.73	100.00	86.96	78.57	88.13	92.31	4.18	0.539234	0.820531
K	intron_retention	GMPR2	chr14	+	chr14:24705347-24706276				chr14:24705346-24705347;chr14:24706276-24706277		9.68	0.00	10.64	NA	0.00	NA	1.49	6.12	0.00	2.56	1.45	0.00	1.23	6.82	3.03	0.00	0.00	0.00	NA	7.14	0.00	NA	10.00	16.67	0.00	5.41	10.00	NA	2.63	10.00	7.69	6.82	0.00	8.33	5.00	9.52	0.00	6.98	6.98	0.038307	1.000000
N	cassette	TCIRG1	chr11	+	chr11:67806587-67808734;chr11:67806587-67807632	chr11:67806587-67807258;chr11:67807430-67808734,chr11:67807430-67807632		chr11:67807259-67807429			18.71	6.25	9.95	NA	15.79	NA	26.60	20.96	15.12	32.50	32.76	31.76	24.85	21.55	16.04	23.71	38.89	38.89	20.00	20.00	17.02	12.77	10.09	12.82	23.08	20.12	14.41	24.49	22.06	19.05	15.19	13.04	16.67	17.24	17.39	19.23	21.54	20.06	-1.48	0.963025	0.990355
K	intron_retention	SIDT2	chr11	+	chr11:117063975-117064568				chr11:117063974-117063975;chr11:117064568-117064569		6.45	0.00	7.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	8.33	0.00	9.09	0.00	0.00	0.00	0.00	0.894241	1.000000
N	alternative_acceptor	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61136068;chr11:61135471-61136243;chr11:61135471-61136071	chr11:61135471-61135723		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		8.33	5.00	11.11	2.70	2.63	4.55	0.00	0.00	0.00	3.70	2.33	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	5.26	3.03	NA	NA	0.00	9.09	0.00	0.00	0.00	5.71	8.70	5.00	3.23	2.94	5.88	2.50	0.00	-2.50	0.941069	0.984632
N	alternative_acceptor		chr5	+	chr5:139921867-139924405;chr5:139921867-139927230	chr5:139921867-139928490		chr5:139924406-139927230;chr5:139927231-139928490	chr5:139927230-139927231;chr5:139928490-139928491		95.45	93.75	92.00	100.00	100.00	100.00	93.33	100.00	95.00	93.33	92.86	NA	93.33	100.00	92.00	93.33	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.00	95.24	97.14	100.00	94.44	100.00	100.00	96.00	100.00	95.45	100.00	87.50	94.88	100.00	5.12	0.178499	0.660713
N	coord_cassette	TRPV2	chr17	+	chr17:16332297-16340102	chr17:16332297-16335097;chr17:16335165-16336887;chr17:16337013-16338203;chr17:16338284-16340102		chr17:16335098-16335164;chr17:16336888-16337012;chr17:16338204-16338283			89.19	100.00	100.00	100.00	93.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	100.00	97.22	100.00	90.48	100.00	95.45	100.00	100.00	95.56	100.00	100.00	0.00	0.290917	0.643829
N	jcn_only_AD	C7orf50	chr7	-	chr7:1049780-1166892;chr7:1049780-1049867;chr7:1049780-1060996	chr7:1049780-1067893		chr7:1049868-1060996;chr7:1060997-1067893;chr7:1067894-1166892	chr7:1060996-1060997;chr7:1067893-1067894;chr7:1166892-1166893		94.74	92.31	100.00	93.33	96.72	90.91	88.24	100.00	96.55	86.96	93.14	94.87	82.09	100.00	92.45	76.00	86.96	85.71	91.55	97.14	94.29	86.67	96.88	100.00	84.91	100.00	100.00	100.00	83.64	85.71	100.00	100.00	93.42	84.21	92.45	94.44	89.89	100.00	10.11	0.001710	0.125290
N	jcn_only_AA	MAN1B1	chr9	+	chr9:140002115-140002982;chr9:140002115-140002461;chr9:140002115-140002839	chr9:140002115-140002878		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		5.80	0.00	0.00	8.70	2.65	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	5.71	0.00	2.74	0.00	0.00	0.00	0.00	0.00	0.00	3.45	8.77	0.00	6.98	0.00	1.67	4.62	0.00	0.00	0.00	0.957691	0.984403
N	alternative_first_exon	HSPB11	chr1	-	chr1:54509199-54518672	chr1:54509199-54511364	chr1:54518673-54519111	chr1:54511365-54511459			99.21	100.00	99.34	98.41	98.06	93.94	97.97	97.79	97.03	99.08	97.14	97.90	98.80	98.85	98.33	98.00	97.41	97.86	98.57	100.00	97.28	100.00	98.19	98.86	100.00	98.61	100.00	98.00	99.40	100.00	98.56	98.40	98.23	100.00	98.51	98.98	98.69	98.73	0.04	0.848676	0.895639
K	intron_retention	NAPRT	chr8	-	chr8:144657516-144657592				chr8:144657515-144657516;chr8:144657592-144657593		10.64	18.18	23.53	13.79	15.09	4.76	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	5.88	3.57	0.00	0.00	11.46	13.04	14.93	12.50	13.51	NA	12.43	4.76	19.23	7.69	10.53	13.64	14.04	14.29	11.63	8.00	16.22	15.38	11.55	7.70	-3.85	0.801586	1.000000
K	intron_retention		chr11	+	chr11:46400787-46401018				chr11:46400786-46400787;chr11:46401018-46401019		4.84	7.00	5.62	0.00	4.65	0.00	0.00	35.71	5.56	5.00	2.33	0.00	1.06	31.91	6.45	0.00	1.11	NA	4.86	9.80	3.76	5.88	4.55	0.00	5.08	23.33	6.25	0.00	8.96	8.33	12.28	4.76	4.44	3.85	6.12	0.00	4.65	17.80	13.15	0.730735	1.000000
K	jcn_only_AA	SETDB1	chr1	+	chr1:150936560-150936725	chr1:150936560-150936722		chr1:150936723-150936725	chr1:150936725-150936726		100.00	95.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	NA	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	94.12	100.00	100.00	100.00	100.00	96.15	100.00	90.91	100.00	98.69	100.00	1.31	0.082517	0.663989
K	alternative_donor	NOL3	chr16	+	chr16:67208848-67208949	chr16:67208850-67208949		chr16:67208848-67208849	chr16:67208847-67208848		5.00	0.00	4.55	NA	0.00	0.00	NA	9.09	4.76	NA	NA	NA	NA	0.00	4.76	NA	NA	NA	3.57	7.69	3.45	NA	0.00	NA	0.00	10.00	3.33	NA	0.00	6.67	0.00	0.00	4.55	0.00	7.69	0.00	1.78	6.35	4.56	0.170947	0.563271
N	jcn_only_AD	SYNCRIP	chr6	-	chr6:86322642-86324736;chr6:86322642-86324698	chr6:86322642-86324556		chr6:86324557-86324698;chr6:86324699-86324736	chr6:86324698-86324699;chr6:86324736-86324737		0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	3.03	0.00	0.00	3.57	6.06	3.74	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	0.00	0.00	0.00	0.00	8.89	0.00	4.88	0.00	0.00	0.00	0.953487	0.974593
N	cassette	CRTC2	chr1	-	chr1:153921121-153924872;chr1:153924143-153924872	chr1:153924143-153924493,chr1:153921121-153924493;chr1:153924739-153924872		chr1:153924494-153924738			98.80	100.00	98.04	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	90.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	98.17	100.00	100.00	100.00	100.00	97.25	100.00	97.78	98.18	96.15	100.00	100.00	0.00	0.421175	0.729966
N	coord_cassette	MARCH2	chr19	+	chr19:8486901-8503271	chr19:8486901-8491492;chr19:8491689-8495541;chr19:8495752-8503271		chr19:8491493-8491688;chr19:8495542-8495751			99.30	100.00	99.25	97.06	100.00	100.00	100.00	100.00	98.76	98.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	98.84	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	98.73	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.733582	0.870412
N	intron_retention		chr11	+	chr11:60161380-60162418				chr11:60161379-60161380;chr11:60162418-60162419		99.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	97.92	100.00	100.00	92.86	100.00	100.00	100.00	98.89	100.00	93.48	100.00	100.00	0.00	0.594508	1.000000
N	intron_retention		chr6	-	chr6:34256263-34256516				chr6:34256262-34256263;chr6:34256516-34256517		100.00	100.00	100.00	91.67	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	94.74	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	98.72	100.00	1.28	0.860124	1.000000
K	intron_retention	MTIF3	chr13	-	chr13:28011411-28014125				chr13:28011410-28011411;chr13:28014125-28014126		4.00	4.55	8.47	8.00	1.18	4.17	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	6.98	2.97	0.00	3.39	NA	0.00	8.57	3.33	0.00	2.90	5.56	6.45	5.71	2.17	4.00	5.77	17.24	2.00	5.22	3.23	0.529734	1.000000
N	jcn_only_AD	PRMT2	chr21	+	chr21:48056448-48056807;chr21:48055676-48056807	chr21:48056460-48056807		chr21:48055676-48056447;chr21:48056448-48056459	chr21:48055675-48055676;chr21:48056447-48056448		53.57	80.00	73.17	84.21	76.92	80.77	79.81	85.00	82.76	82.28	80.90	82.35	82.00	85.90	74.67	87.84	90.70	85.19	66.67	65.12	50.00	67.86	75.00	89.74	54.55	77.08	83.72	73.68	87.50	83.08	44.44	69.70	64.29	78.05	76.47	83.08	73.24	71.10	-2.14	0.753115	0.872874
N	jcn_only_AA	SYVN1	chr11	-	chr11:64896187-64897200;chr11:64896263-64897200	chr11:64896309-64897200		chr11:64896187-64896262;chr11:64896263-64896308	chr11:64896186-64896187;chr11:64896262-64896263		0.00	0.00	0.00	NA	0.00	NA	3.12	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.963918	0.987074
K	intron_retention		chr20	-	chr20:43251572-43251647				chr20:43251571-43251572;chr20:43251647-43251648		19.72	5.26	30.95	13.11	14.52	10.62	0.00	1.11	4.76	0.00	1.75	0.54	1.45	0.00	6.06	0.71	1.06	1.11	20.00	17.91	12.50	13.19	18.00	18.39	33.33	10.73	17.31	8.07	9.52	5.36	19.73	18.84	16.98	13.45	11.45	10.14	11.12	14.32	3.20	0.958986	1.000000
N	jcn_only_AA	KMO	chr1	+	chr1:241752133-241753297;chr1:241752133-241753355;chr1:241752133-241753313	chr1:241752133-241753352		chr1:241753298-241753313;chr1:241753314-241753352;chr1:241753353-241753355	chr1:241753313-241753314;chr1:241753352-241753353;chr1:241753355-241753356		15.56	35.14	6.38	12.68	15.56	16.89	6.67	8.62	3.85	9.15	10.94	8.65	14.29	6.67	6.67	9.88	7.50	8.24	17.39	10.59	6.06	14.94	13.64	12.96	NA	8.33	10.91	10.79	14.49	14.83	13.10	13.95	9.52	12.87	14.22	12.95	14.29	9.61	-4.68	0.294152	0.663989
K	jcn_only_AA	CRNKL1	chr20	-	chr20:20018179-20018992	chr20:20018216-20018992		chr20:20018179-20018215	chr20:20018178-20018179		100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	96.43	100.00	95.83	97.06	100.00	93.33	100.00	100.00	93.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	97.06	100.00	100.00	100.00	100.00	0.00	0.641957	0.839859
N	jcn_only_AA	HIGD1A,RP11-70C1.3,RP4-613B23.5	chr3	-	chr3:42828457-42835648;chr3:42830374-42835648	chr3:42827655-42835648		chr3:42827655-42828456;chr3:42828457-42830373	chr3:42827654-42827655;chr3:42828456-42828457		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention		chr17	-	chr17:8790539-8790837				chr17:8790538-8790539;chr17:8790837-8790838		5.26	7.14	7.06	NA	0.00	NA	0.61	0.64	0.00	0.00	1.18	0.00	1.44	0.00	0.80	0.90	1.14	0.27	NA	2.65	NA	5.88	4.28	4.08	14.29	2.07	2.27	3.41	5.17	0.00	1.20	4.62	20.00	3.80	5.49	4.13	7.14	1.63	-5.50	0.484234	1.000000
K	intron_retention	CCS	chr11	+	chr11:66367108-66367959				chr11:66367107-66367108;chr11:66367959-66367960		5.08	9.68	8.77	0.00	3.45	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.00	0.00	0.00	NA	1.75	0.00	1.41	0.00	4.44	NA	7.59	8.00	2.74	7.69	2.50	4.17	5.13	4.92	2.74	10.00	3.45	11.11	2.25	5.08	2.83	0.722874	1.000000
K	intron_retention	TRIP6	chr7	+	chr7:100468366-100469164				chr7:100468365-100468366;chr7:100469164-100469165		16.33	19.54	20.83	10.34	7.79	6.06	0.00	0.00	2.04	0.00	6.45	0.00	2.50	1.22	2.04	0.00	1.45	3.70	5.17	2.33	6.52	13.64	9.23	9.52	5.77	5.36	11.54	5.56	7.50	0.00	11.84	18.75	14.75	12.50	11.63	11.36	5.47	3.85	-1.62	0.548143	1.000000
N	alternative_acceptor	AC009948.5,STAMBP	chr2	+	chr2:74077641-74086380	chr2:74077641-74080161		chr2:74080162-74086380	chr2:74086380-74086381		5.88	0.00	5.26	NA	9.09	NA	0.00	2.70	2.22	0.00	2.70	0.00	2.27	3.45	2.00	4.55	1.75	0.00	NA	0.00	0.00	NA	4.55	9.09	NA	0.00	3.70	0.00	4.00	0.00	0.00	0.00	0.00	6.25	4.55	3.23	0.00	1.35	1.35	0.247046	0.703580
K	cassette	NAP1L1	chr12	-	chr12:76461254-76478346;chr12:76462775-76478346;chr12:76454060-76478346	chr12:76461254-76467982,chr12:76462775-76467982,chr12:76454060-76467982;chr12:76468020-76478346		chr12:76467983-76468019			94.23	100.00	92.76	100.00	97.87	NA	98.97	95.05	96.99	100.00	99.09	97.89	98.47	97.65	95.76	98.41	98.86	96.95	100.00	84.62	92.00	100.00	97.41	96.15	100.00	90.41	96.58	99.01	100.00	100.00	93.33	93.83	95.65	100.00	99.18	98.31	99.48	93.78	-5.70	0.017528	0.373030
N	cassette	LILRB5	chr19	-	chr19:54756753-54758227;chr19:54756851-54758227	chr19:54756753-54757880,chr19:54756851-54757880;chr19:54757932-54758227		chr19:54757881-54757931			100.00	91.30	NA	100.00	94.59	100.00	98.46	100.00	NA	100.00	100.00	100.00	97.00	95.45	NA	97.59	96.97	97.62	100.00	100.00	NA	100.00	95.16	90.00	88.68	98.66	100.00	94.29	93.75	100.00	100.00	NA	92.31	86.67	94.00	96.30	94.66	100.00	5.34	0.064295	0.621473
K	intron_retention	PRMT2	chr21	+	chr21:48078833-48080744				chr21:48078832-48078833;chr21:48080744-48080745		29.17	33.33	27.27	NA	NA	NA	26.79	31.03	23.33	8.33	18.92	7.69	29.03	20.00	26.47	16.67	21.43	8.70	8.33	11.11	14.29	30.00	25.93	33.33	NA	21.74	21.21	13.33	26.92	6.67	21.43	21.43	30.00	23.08	27.78	25.00	29.03	21.59	-7.45	0.919658	1.000000
K	intron_retention	UPF3A	chr13	+	chr13:115067501-115070263				chr13:115067500-115067501;chr13:115070263-115070264		0.00	35.29	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	NA	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	4.00	NA	NA	0.00	NA	0.00	0.00	6.25	0.00	0.00	0.00	0.709184	1.000000
N	coord_cassette	GSDMD	chr8	+	chr8:144642140-144643539	chr8:144642140-144642772;chr8:144642942-144643171;chr8:144643275-144643539		chr8:144642773-144642941;chr8:144643172-144643274			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	90.00	NA	NA	100.00	100.00	100.00	0.00	0.373901	0.643829
N	alternative_donor	GSDMD	chr8	+	chr8:144642140-144642772	chr8:144642546-144642772		chr8:144642140-144642545	chr8:144642139-144642140		17.09	14.29	22.35	16.67	11.76	12.12	8.70	6.90	9.09	12.50	5.56	14.29	16.13	18.46	21.28	28.57	16.67	12.12	18.18	43.75	21.05	NA	33.33	57.14	62.50	44.57	44.62	52.94	38.46	42.31	41.38	50.00	41.67	57.14	NA	60.00	17.16	29.92	12.77	0.872952	0.968901
K	alternative_donor	TXNDC17	chr17	+	chr17:6544548-6545072;chr17:6544421-6545072	chr17:6544473-6545072		chr17:6544421-6544472;chr17:6544473-6544547	chr17:6544420-6544421;chr17:6544472-6544473		9.59	17.24	19.18	19.15	13.11	16.07	10.96	11.43	9.84	18.42	19.70	22.86	9.47	8.57	19.12	15.71	22.89	12.50	11.64	9.26	13.33	15.38	12.94	11.54	9.46	17.50	14.12	22.58	6.49	15.79	16.13	18.84	9.87	23.26	13.43	11.76	10.41	10.51	0.10	0.752795	0.899031
K	intron_retention	C21orf33,CH507-9B2.3,CH507-9B2.4	chr21	+	chr21:45556056-45557058				chr21:45556055-45556056;chr21:45557058-45557059		0.00	0.00	3.12	0.00	2.17	10.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	1.11	0.00	3.03	0.00	3.03	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	5.88	0.00	4.35	2.78	0.00	0.00	0.00	0.821584	1.000000
N	jcn_only_AD	RP11-69E11.4	chr1	-	chr1:39994837-40007391	chr1:39994837-40007328		chr1:40007329-40007391	chr1:40007391-40007392		36.36	31.03	NA	50.00	35.29	64.86	NA	NA	NA	50.00	NA	66.67	NA	NA	NA	NA	NA	60.00	41.18	41.67	0.00	43.75	40.00	72.73	9.09	50.00	NA	NA	54.55	69.23	52.94	NA	45.00	NA	NA	46.15	36.11	45.84	9.73	0.195167	0.657607
N	alternative_donor	RP11-437B10.1	chr15	+	chr15:93489447-93492181	chr15:93489571-93492181		chr15:93489447-93489570	chr15:93489446-93489447		0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	NA	0.00	5.56	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	3.45	0.00	0.00	0.00	0.185159	0.563271
N	jcn_only_AA	TGFBI	chr5	+	chr5:135385270-135388664;chr5:135385270-135386473;chr5:135385270-135388706;chr5:135385270-135386076	chr5:135385270-135388595		chr5:135386077-135386473;chr5:135386474-135388595;chr5:135388596-135388664;chr5:135388665-135388706	chr5:135386473-135386474;chr5:135388595-135388596;chr5:135388664-135388665;chr5:135388706-135388707		100.00	98.83	99.68	92.31	98.64	83.78	99.77	99.79	99.89	99.49	99.61	99.72	99.64	99.74	99.53	100.00	99.46	99.54	98.62	100.00	98.68	99.56	99.67	99.68	99.02	100.00	99.76	100.00	99.66	99.25	98.77	99.95	96.98	99.44	99.65	99.60	98.92	99.90	0.97	0.085084	0.663989
K	jcn_only_AA	JMJD1C	chr10	-	chr10:64927870-64928194	chr10:64927895-64928194		chr10:64927870-64927894	chr10:64927869-64927870		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	95.24	100.00	100.00	100.00	100.00	100.00	96.43	100.00	92.00	100.00	100.00	98.65	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	NADK	chr1	-	chr1:1686138-1687941	chr1:1686138-1687696;chr1:1687783-1687941		chr1:1687697-1687782			100.00	72.73	93.75	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.61	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.405383	0.720274
K	mutually_exclusive	C20orf24,TGIF2-C20orf24	chr20	+	chr20:35236222-35238003,chr20:35238134-35240412	chr20:35236222-35236292,chr20:35236404-35240412	chr20:35238004-35238133	chr20:35236293-35236403			1.64	5.17	3.06	0.00	2.44	3.23	0.95	0.81	1.05	1.75	1.28	2.67	1.09	0.73	1.09	1.08	1.32	0.00	2.35	1.71	1.20	1.35	0.55	1.82	0.00	1.20	1.39	1.75	0.74	0.94	2.04	1.44	0.73	1.69	0.53	1.83	1.02	1.42	0.40	0.664279	0.711728
K	alternative_acceptor	NELFE	chr6	-	chr6:31922580-31922835;chr6:31922655-31922835	chr6:31922670-31922835		chr6:31922580-31922654;chr6:31922655-31922669	chr6:31922579-31922580;chr6:31922654-31922655		77.08	78.38	83.72	71.43	85.37	76.19	88.57	61.90	57.14	85.19	75.00	75.00	76.74	77.78	76.19	76.92	74.42	68.18	85.29	83.33	79.55	63.64	81.58	81.82	79.17	80.77	83.33	84.62	80.56	88.46	75.00	81.25	86.49	80.77	81.82	79.41	82.23	77.43	-4.80	0.112767	0.605363
K	cassette	DNAJC21	chr5	+	chr5:34945909-34950274	chr5:34945909-34949647;chr5:34949783-34950274		chr5:34949648-34949782			0.00	NA	7.14	NA	0.00	NA	0.00	9.52	15.79	9.52	10.26	6.25	5.71	6.67	8.45	8.33	6.25	6.45	10.00	5.88	0.00	0.00	6.45	3.70	NA	NA	0.00	6.25	0.00	6.67	6.25	2.56	5.88	5.88	9.38	4.00	5.79	6.25	0.46	0.921011	0.979330
K	intron_retention		chr10	-	chr10:104183617-104183752				chr10:104183616-104183617;chr10:104183752-104183753		7.26	9.48	11.71	12.00	9.71	13.85	0.00	0.00	0.00	0.00	0.00	0.00	2.47	0.00	1.52	0.00	0.00	0.00	7.09	4.42	6.08	15.00	8.91	16.67	11.63	7.45	8.82	6.12	9.30	14.08	7.50	10.59	3.91	3.92	6.94	14.67	5.50	5.84	0.34	0.835483	1.000000
N	jcn_only_AA	EEF1D	chr8	-	chr8:144662928-144663223;chr8:144662898-144663223	chr8:144662803-144663223		chr8:144662803-144662897;chr8:144662898-144662927	chr8:144662802-144662803;chr8:144662897-144662898		4.35	3.76	3.28	3.51	4.06	5.51	3.06	0.00	1.88	2.66	3.25	0.00	2.53	0.00	3.93	2.77	0.00	0.00	7.15	7.39	6.18	5.24	4.64	5.97	4.41	3.57	3.66	4.15	3.99	4.64	9.12	6.94	8.59	4.25	4.24	3.36	4.08	3.96	-0.12	0.653757	0.846812
K	intron_retention		chr17	+	chr17:30807650-30807770				chr17:30807649-30807650;chr17:30807770-30807771		5.97	5.37	6.82	3.29	2.42	2.58	14.06	8.86	12.00	9.76	10.98	6.58	12.96	9.30	14.56	13.43	9.68	15.38	1.69	8.82	6.59	7.41	9.20	6.33	3.06	6.42	10.84	8.04	13.10	7.09	7.23	7.32	4.69	8.00	7.69	6.43	5.03	8.03	3.00	0.985232	1.000000
N	jcn_only_AA	HIGD1A,RP11-70C1.3,RP4-613B23.5	chr3	-	chr3:42830374-42835648;chr3:42827655-42835648	chr3:42828457-42835648		chr3:42827655-42828456;chr3:42828457-42830373	chr3:42827654-42827655;chr3:42828456-42828457		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AD	DPP7	chr9	-	chr9:140006683-140007257;chr9:140006683-140007171;chr9:140006683-140007196	chr9:140006683-140007200		chr9:140007172-140007196;chr9:140007197-140007200;chr9:140007201-140007257	chr9:140007196-140007197;chr9:140007200-140007201;chr9:140007257-140007258		3.26	0.86	2.06	2.42	0.71	0.00	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	1.49	1.72	2.11	0.84	2.07	0.00	0.00	0.86	0.00	0.56	0.00	2.04	5.36	1.68	3.65	0.00	1.03	0.60	0.74	0.15	0.599893	0.802597
K	alternative_donor	SKIV2L	chr6	+	chr6:31937094-31937291	chr6:31937198-31937291		chr6:31937094-31937197	chr6:31937093-31937094		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	92.31	97.67	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	0.00	0.391002	0.657675
K	intron_retention		chr11	+	chr11:63764414-63764521				chr11:63764413-63764414;chr11:63764521-63764522		6.00	3.09	4.38	1.72	0.84	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.00	2.27	1.61	5.00	2.61	1.64	4.26	0.89	1.42	0.00	0.00	0.00	8.33	4.19	4.40	2.35	1.94	3.85	1.54	1.58	0.04	0.915298	1.000000
K	jcn_only_AA	SRA1	chr5	-	chr5:139936858-139937012	chr5:139936918-139937012		chr5:139936858-139936917	chr5:139936857-139936858		3.51	0.00	4.69	5.88	2.61	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	2.00	0.00	0.00	4.17	2.94	0.00	0.00	4.55	0.00	5.00	2.08	5.26	1.23	2.33	0.00	0.00	0.00	0.618138	0.827651
N	alternative_acceptor	BCAP29,TAX1BP1	chr7	+	chr7:27856658-27867360;chr7:27856658-27867356	chr7:27856658-27867333		chr7:27867334-27867356;chr7:27867357-27867360	chr7:27867356-27867357;chr7:27867360-27867361		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	1.64	0.00	0.00	0.00	0.592751	0.844088
N	cassette	DTNBP1	chr6	-	chr6:15533627-15615497	chr6:15533627-15593289;chr6:15593313-15615497		chr6:15593290-15593312			NA	84.62	100.00	NA	NA	NA	100.00	100.00	100.00	94.12	100.00	NA	100.00	100.00	100.00	94.12	100.00	NA	100.00	84.62	90.48	NA	100.00	NA	83.33	83.33	80.00	NA	100.00	100.00	NA	NA	80.00	NA	81.82	NA	92.31	92.31	0.00	0.916317	0.977920
K	intron_retention		chr19	-	chr19:2110896-2111283				chr19:2110895-2110896;chr19:2111283-2111284		2.78	11.63	8.33	0.00	5.88	0.00	0.00	0.00	4.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	2.44	5.17	4.65	4.69	0.00	2.13	4.62	0.00	3.77	0.00	1.85	3.57	0.00	2.86	6.33	3.96	0.00	1.73	1.73	0.982112	1.000000
K	intron_retention	SMG5	chr1	-	chr1:156220462-156220648				chr1:156220461-156220462;chr1:156220648-156220649		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	1.79	0.00	0.00	0.00	4.35	0.00	0.00	0.00	5.26	0.00	0.00	2.27	2.38	0.00	0.00	0.00	0.00	0.594508	1.000000
K	cassette	FRMD4A	chr10	-	chr10:13689036-13696415	chr10:13689036-13693902;chr10:13693975-13696415		chr10:13693903-13693974			0.00	5.00	0.00	NA	0.00	NA	0.00	4.35	0.00	NA	2.53	NA	1.39	0.00	0.00	0.00	2.56	NA	NA	0.00	NA	NA	2.00	NA	NA	0.00	0.00	NA	1.89	NA	NA	NA	0.00	NA	0.00	NA	0.69	0.00	-0.69	0.637920	0.868138
N	jcn_only_AA	PRMT2	chr21	+	chr21:48055676-48056355;chr21:48055676-48056141;chr21:48055676-48056807	chr21:48055676-48056350					53.57	44.44	63.41	75.00	64.71	57.14	65.52	73.75	76.27	72.73	70.00	72.84	75.47	75.61	64.00	76.19	79.22	80.49	53.85	38.46	36.67	57.58	57.50	61.76	70.59	60.47	77.42	66.67	68.57	65.00	35.71	50.00	31.25	65.38	58.33	68.00	59.69	57.02	-2.67	0.952984	0.984403
K	coord_cassette	UPP1	chr7	+	chr7:48134425-48146469	chr7:48134425-48141420;chr7:48141468-48142893;chr7:48143009-48146469		chr7:48141421-48141467;chr7:48142894-48143008			5.93	2.50	2.96	7.07	4.00	5.76	0.00	3.03	8.33	7.41	3.45	4.65	0.00	6.67	4.35	4.44	3.57	3.23	2.94	5.43	4.59	6.67	4.76	8.00	2.04	5.66	3.06	3.33	0.00	7.14	4.07	1.72	1.59	6.17	2.33	4.48	1.81	5.54	3.73	0.000690	0.111091
K	intron_retention	ANAPC4	chr4	+	chr4:25418221-25419237				chr4:25418220-25418221;chr4:25419237-25419238		4.65	0.00	5.56	0.00	1.85	8.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	7.14	NA	0.00	NA	0.00	2.63	1.79	6.45	2.94	10.00	3.45	0.00	3.57	0.00	0.00	8.33	4.26	2.86	2.78	10.00	5.88	10.20	0.00	2.63	2.63	0.588124	1.000000
N	cassette	SDCCAG8	chr1	+	chr1:243589861-243663057	chr1:243589861-243652315;chr1:243652443-243663057		chr1:243652316-243652442			100.00	100.00	100.00	NA	100.00	100.00	NA	NA	80.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	95.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.04	NA	100.00	NA	100.00	100.00	0.00	0.373901	0.709176
N	alternative_donor	RNF220	chr1	+	chr1:45105258-45110369;chr1:45101835-45110369	chr1:45104088-45110369		chr1:45101835-45104087;chr1:45104088-45105257	chr1:45101834-45101835;chr1:45104087-45104088		0.00	1.37	1.14	NA	0.00	NA	0.00	0.00	0.00	0.00	1.19	0.00	1.06	0.00	0.00	0.00	1.02	0.00	3.45	0.00	8.00	0.00	0.00	3.57	2.22	0.00	1.56	0.00	2.00	0.00	0.00	0.00	6.67	0.00	2.17	2.56	1.80	0.00	-1.80	0.051277	0.397730
N	coord_cassette	NCF2	chr1	-	chr1:183536124-183539914	chr1:183536124-183536338;chr1:183536481-183538276;chr1:183538321-183539914		chr1:183536339-183536480;chr1:183538277-183538320			100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.44	100.00	100.00	100.00	99.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.74	100.00	100.00	0.00	0.411143	0.661940
K	intron_retention	FLII	chr17	-	chr17:18149165-18149247				chr17:18149164-18149165;chr17:18149247-18149248		5.47	13.42	10.48	4.55	9.73	5.26	0.00	0.00	0.89	0.00	0.66	1.00	1.28	2.19	3.64	1.69	0.57	0.83	7.61	5.93	5.56	7.83	9.68	7.56	12.33	3.42	5.71	6.71	8.92	6.77	6.19	8.93	8.49	8.38	5.43	4.72	8.05	4.45	-3.61	0.491155	1.000000
K	intron_retention	PSME1	chr14	+	chr14:24607778-24607944				chr14:24607777-24607778;chr14:24607944-24607945		57.14	75.00	64.29	46.15	41.67	53.33	NA	NA	NA	NA	NA	NA	NA	NA	28.57	NA	NA	NA	46.15	35.71	38.46	NA	NA	61.54	44.44	36.36	66.67	NA	NA	71.43	62.50	51.72	45.00	53.33	NA	73.33	45.58	46.75	1.17	0.923977	1.000000
N	alternative_acceptor	SEC24D	chr4	-	chr4:119644811-119649715	chr4:119649192-119649715		chr4:119644811-119649191	chr4:119644810-119644811		3.23	0.00	5.17	NA	0.00	NA	0.00	0.00	0.00	0.00	1.27	0.00	1.05	0.00	1.92	2.17	1.16	2.63	0.00	3.28	0.00	2.22	2.53	6.56	NA	2.74	4.84	2.44	1.89	2.50	3.23	4.44	0.00	6.45	4.94	7.04	0.00	2.99	2.99	0.036169	0.560254
K	intron_retention	ERICH1	chr8	-	chr8:614677-618597				chr8:614676-614677;chr8:618597-618598		5.26	0.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	11.76	7.14	NA	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	5.88	4.55	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	GPR137	chr11	+	chr11:64055687-64055811				chr11:64055686-64055687;chr11:64055811-64055812		20.00	14.71	23.81	7.69	16.67	NA	8.33	0.00	7.50	NA	0.00	0.00	0.00	0.00	9.38	NA	10.00	NA	22.73	10.00	15.15	NA	18.18	NA	22.22	12.50	17.24	0.00	20.00	NA	5.56	16.67	0.00	NA	27.27	18.75	11.52	7.78	-3.74	0.931848	1.000000
N	cassette	EGLN2,RAB4B-EGLN2	chr19	+	chr19:41307321-41332468	chr19:41307321-41313042;chr19:41313180-41332468		chr19:41313043-41313179			100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	90.91	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	ABHD12	chr20	-	chr20:25281425-25282854;chr20:25270866-25282854;chr20:25275667-25282854;chr20:25282015-25282854	chr20:25282270-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		30.43	31.00	26.67	30.56	17.35	32.08	18.18	15.79	13.33	14.29	8.47	30.00	28.89	33.33	31.58	20.00	28.00	26.67	31.78	29.41	33.33	30.77	29.89	30.00	29.82	31.82	28.57	31.03	50.00	33.33	14.63	33.33	33.00	20.00	32.08	33.33	30.41	29.92	-0.49	0.498794	0.791230
N	jcn_only_AA	AOAH	chr7	-	chr7:36568121-36570023;chr7:36561722-36570023;chr7:36564906-36570023;chr7:36567958-36570023	chr7:36568829-36570023		chr7:36561722-36564905;chr7:36564906-36567957;chr7:36567958-36568120;chr7:36568121-36568828	chr7:36561721-36561722;chr7:36564905-36564906;chr7:36567957-36567958;chr7:36568120-36568121		6.06	0.00	4.00	0.00	0.00	0.00	1.18	2.35	1.29	0.00	0.00	0.00	3.85	5.41	4.55	0.00	0.00	0.00	0.00	4.88	0.93	0.00	2.84	2.99	0.00	0.00	3.70	0.00	0.00	0.00	0.00	3.88	0.00	1.74	2.75	3.73	0.00	3.62	3.62	0.112951	0.663989
K	intron_retention	SRSF2	chr17	-	chr17:74732547-74732880				chr17:74732546-74732547;chr17:74732880-74732881		5.63	0.00	4.42	0.00	0.00	0.00	2.00	0.00	1.37	0.79	0.00	0.78	1.23	2.99	0.93	0.29	0.43	0.00	0.00	5.00	0.00	1.44	2.63	0.85	NA	0.00	0.00	0.00	1.69	2.38	11.54	7.69	10.00	0.90	3.75	1.38	1.23	4.00	2.77	0.768400	1.000000
K	cassette	MGST1	chr12	+	chr12:16507313-16516728	chr12:16507313-16510538;chr12:16510634-16516728		chr12:16510539-16510633			94.87	100.00	96.40	90.00	100.00	NA	100.00	97.59	96.93	96.43	94.00	98.33	93.75	95.65	96.85	93.48	95.40	95.08	NA	97.01	95.76	95.24	96.61	100.00	NA	96.72	97.51	94.83	95.45	93.55	91.82	96.28	100.00	92.78	95.52	97.01	100.00	96.19	-3.81	0.175680	0.709176
K	intron_retention		chr16	+	chr16:27370316-27372086				chr16:27370315-27370316;chr16:27372086-27372087	chr16:27370237-27370315;chr16:27372087-27372136	4.08	0.00	7.25	NA	NA	NA	0.00	0.00	0.59	0.94	0.00	3.12	0.00	0.00	1.73	2.30	3.70	0.00	NA	3.03	0.00	6.67	5.56	7.45	0.00	2.50	6.92	0.00	0.00	0.00	0.00	1.69	NA	4.17	0.00	3.88	0.00	1.25	1.25	0.334805	1.000000
K	intron_retention	ELOF1	chr19	-	chr19:11664626-11664825				chr19:11664625-11664626;chr19:11664825-11664826		2.94	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	1.59	0.00	1.83	0.00	0.00	1.92	3.08	3.70	0.00	0.00	9.88	5.45	4.05	1.54	2.86	2.22	0.00	1.89	1.89	0.657885	1.000000
N	alternative_donor	MICAL1	chr6	-	chr6:109767616-109767898;chr6:109767616-109767885	chr6:109767616-109767881		chr6:109767882-109767885;chr6:109767886-109767898	chr6:109767885-109767886;chr6:109767898-109767899		2.90	5.71	8.33	5.56	6.00	NA	0.00	3.12	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	3.66	0.00	4.05	5.00	1.33	6.10	8.33	5.88	4.49	0.00	5.80	7.02	7.55	5.17	3.51	5.88	0.67	4.46	3.79	0.318734	0.650093
N	cassette	WBP4	chr13	+	chr13:41646994-41656839;chr13:41650374-41656839	chr13:41646994-41654781,chr13:41650374-41654781;chr13:41654946-41656839		chr13:41654782-41654945			96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.198350	0.709176
K	jcn_only_AD	C18orf21	chr18	+	chr18:33552804-33554858	chr18:33552871-33554858		chr18:33552804-33552870	chr18:33552803-33552804		100.00	100.00	88.00	NA	75.00	NA	79.17	100.00	84.00	91.67	86.36	85.00	88.89	75.00	83.33	90.91	86.36	82.61	NA	92.86	83.33	NA	90.00	100.00	100.00	84.62	100.00	100.00	88.24	NA	100.00	100.00	100.00	93.33	91.30	91.67	100.00	96.43	-3.57	0.803027	0.908253
N	cassette	MYO1F	chr19	-	chr19:8609349-8613120;chr19:8609349-8612919	chr19:8609349-8610533;chr19:8610621-8612919,chr19:8610621-8613120		chr19:8610534-8610620			96.84	100.00	96.86	NA	100.00	NA	97.44	97.64	98.53	96.08	96.65	95.74	97.85	98.28	97.01	100.00	98.20	93.33	96.67	98.51	100.00	100.00	98.21	100.00	93.48	100.00	95.59	100.00	96.70	100.00	90.32	93.78	91.11	93.33	95.76	93.94	97.06	97.96	0.91	0.670395	0.880013
N	cassette	UBE2K	chr4	+	chr4:39747431-39776453;chr4:39700011-39776453	chr4:39747431-39757276,chr4:39700011-39757276;chr4:39757360-39776453		chr4:39757277-39757359			100.00	100.00	94.12	100.00	100.00	NA	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	97.50	100.00	98.63	100.00	100.00	98.08	96.23	100.00	100.00	100.00	NA	100.00	96.61	100.00	100.00	100.00	97.50	96.83	100.00	100.00	100.00	96.61	100.00	100.00	0.00	0.179252	0.709176
N	mutually_exclusive	IFI44	chr1	+	chr1:79125169-79128388,chr1:79128564-79129449	chr1:79125169-79126238,chr1:79126377-79129449	chr1:79128389-79128563	chr1:79126239-79126376			5.30	36.11	47.37	13.33	46.15	5.61	72.73	29.73	24.14	NA	54.55	62.07	66.67	36.84	31.03	71.43	75.00	91.55	35.71	5.56	45.71	72.73	NA	17.19	16.67	5.69	36.36	28.57	NA	23.93	5.77	6.67	36.36	22.50	NA	8.66	36.23	5.73	-30.50	0.021977	0.104040
K	intron_retention		chr11	+	chr11:64878254-64878798				chr11:64878253-64878254;chr11:64878798-64878799		0.00	5.38	10.00	9.68	7.59	6.12	0.00	8.33	16.00	9.09	0.00	NA	5.26	0.00	6.06	4.00	10.53	NA	2.00	NA	4.35	13.33	8.00	10.00	2.26	7.14	4.35	21.43	10.87	0.00	0.00	0.00	3.77	4.76	7.69	16.67	3.01	0.00	-3.01	0.983255	1.000000
N	alternative_acceptor	MOB3A	chr19	-	chr19:2078679-2085173	chr19:2080751-2085173		chr19:2078679-2080750	chr19:2078678-2078679		2.22	2.70	2.90	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	3.23	0.00	1.79	0.00	NA	0.00	NA	NA	2.38	0.00	0.00	0.00	2.04	NA	0.00	NA	NA	0.00	0.00	3.85	2.63	5.00	0.00	0.00	0.00	0.629152	0.857287
N	alternative_last_exon	STAMBP	chr2	+	chr2:232030732-232031094,chr2:232030732-232031114;chr2:232030732-232037248	chr2:232030732-232035279	chr2:232037249-232037541	chr2:232035280-232035435			96.25	100.00	100.00	100.00	98.09	99.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	99.29	97.65	100.00	97.80	100.00	100.00	97.30	94.62	97.74	100.00	100.00	100.00	100.00	98.83	-1.17	0.247626	0.460585
N	alternative_acceptor	GAK	chr4	-	chr4:844873-845537;chr4:844858-845537;chr4:844806-845537	chr4:844890-845537		chr4:844806-844857;chr4:844858-844872;chr4:844873-844889	chr4:844805-844806;chr4:844857-844858;chr4:844872-844873		4.62	5.06	4.23	6.45	5.00	6.35	3.23	2.08	0.00	3.23	0.00	0.00	0.00	0.00	2.33	3.23	2.78	0.00	5.17	6.67	3.28	4.44	3.64	5.26	1.85	5.88	6.90	2.56	2.56	6.98	6.85	8.43	6.58	8.89	5.08	9.76	4.14	5.25	1.11	0.650709	0.872094
K	alternative_last_exon	CBX3,POM121	chr7	+	chr7:72416248-72418866	chr7:72416248-72416675	chr7:72418867-72421979	chr7:72416676-72418842			92.86	71.79	88.46	86.67	81.82	86.36	100.00	100.00	100.00	100.00	95.24	100.00	93.33	NA	92.86	96.55	94.74	NA	68.00	100.00	81.25	92.31	85.71	90.00	71.43	90.00	90.91	90.00	82.35	91.67	91.67	94.12	78.12	93.75	88.24	93.75	74.96	92.86	17.90	0.043333	0.227559
N	alternative_acceptor	MAZ	chr16	+	chr16:29819615-29819890	chr16:29819615-29819751		chr16:29819752-29819890	chr16:29819890-29819891		4.35	3.03	2.17	0.00	1.56	NA	0.60	0.00	0.00	1.08	0.38	0.00	0.00	0.00	0.00	0.93	1.26	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.70	2.78	0.00	0.00	0.00	8.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.894325	0.963205
N	alternative_acceptor	RHOT2	chr16	+	chr16:720774-720888;chr16:720774-720891	chr16:720774-720924		chr16:720889-720891;chr16:720892-720924	chr16:720891-720892;chr16:720924-720925		3.85	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	AP2A2	chr11	+	chr11:988690-992502				chr11:988689-988690;chr11:992502-992503		0.00	1.83	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	8.82	0.00	0.00	0.00	0.19	0.00	-0.19	0.425230	1.000000
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75649027-75649133	chr15:75649063-75649133		chr15:75649027-75649062	chr15:75649026-75649027		3.85	9.38	6.06	5.26	13.79	9.30	3.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.70	0.00	0.00	0.00	3.85	10.53	6.00	6.45	9.52	2.63	3.28	8.33	6.45	11.76	6.25	8.00	3.70	5.00	9.21	7.50	7.69	1.54	3.56	3.85	0.29	0.848093	0.946486
K	jcn_only_AD	GRHPR	chr9	+	chr9:37422803-37424841	chr9:37422831-37424841		chr9:37422803-37422830	chr9:37422802-37422803		80.00	75.00	75.00	92.86	76.92	NA	91.53	84.62	83.78	81.58	83.05	84.62	76.56	86.67	82.35	81.25	75.44	85.19	87.50	NA	84.00	85.71	88.00	100.00	66.67	73.33	82.76	85.19	86.67	85.71	NA	76.47	87.50	77.27	70.00	88.24	82.03	82.31	0.28	0.942910	0.968697
K	intron_retention	CIC	chr19	+	chr19:42798457-42798755				chr19:42798456-42798457;chr19:42798755-42798756		6.25	0.00	2.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.70	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.70	6.82	0.00	0.00	0.00	0.00	0.00	1.85	1.85	0.269064	1.000000
K	jcn_only_AA	TRAPPC12	chr2	+	chr2:3469467-3481465	chr2:3469467-3481462		chr2:3481463-3481465	chr2:3481465-3481466		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	10.00	10.34	NA	5.56	0.00	0.00	0.00	8.11	NA	0.00	0.00	4.17	NA	2.50	NA	0.00	0.00	2.56	9.09	3.45	10.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	AURKAIP1	chr1	-	chr1:1309283-1309379				chr1:1309282-1309283;chr1:1309379-1309380		10.43	4.80	8.74	3.77	1.50	2.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.61	15.66	6.08	3.61	3.29	7.69	2.65	5.19	6.06	2.08	0.60	1.59	28.99	17.53	12.13	4.17	4.95	3.53	3.63	7.81	4.18	0.477641	1.000000
K	alternative_acceptor	ATP6V0D1	chr16	-	chr16:67472999-67473176	chr16:67473051-67473176		chr16:67472999-67473050	chr16:67472998-67472999		93.92	91.59	95.42	94.44	92.90	93.33	95.34	96.35	93.55	97.69	97.37	96.32	95.43	95.04	93.48	95.16	96.18	96.38	83.54	89.43	89.81	89.81	92.96	90.91	97.06	94.21	94.16	94.57	92.86	94.81	86.43	91.85	87.37	94.51	92.98	92.78	93.47	94.06	0.60	0.759632	0.910949
K	intron_retention	GPAA1	chr8	+	chr8:145139779-145139945				chr8:145139778-145139779;chr8:145139945-145139946		8.51	10.48	22.73	14.81	10.77	9.09	0.00	0.00	0.00	0.00	1.18	0.00	0.96	2.78	1.79	1.85	1.23	4.00	10.64	14.29	12.00	25.00	18.00	31.58	0.00	11.54	7.50	14.29	6.25	16.00	28.00	31.25	10.42	18.92	19.44	18.18	5.69	10.02	4.33	0.484022	1.000000
N	jcn_only_AA	EIF4B	chr12	+	chr12:53432196-53433033;chr12:53432196-53433021	chr12:53432196-53433018		chr12:53433019-53433021;chr12:53433022-53433033	chr12:53433021-53433022;chr12:53433033-53433034		0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	2.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.518488	0.760908
N	jcn_only_AD	CTBS	chr1	-	chr1:85020883-85028939	chr1:85020883-85028927		chr1:85028928-85028939	chr1:85028939-85028940		0.00	7.46	2.17	0.00	0.00	0.00	0.00	2.56	3.92	0.00	3.90	6.15	0.00	0.00	0.00	0.00	3.90	4.00	9.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	5.88	0.00	0.00	0.00	0.00	0.00	3.23	2.00	0.00	0.00	0.00	0.247478	0.657607
N	jcn_only_AA	MTCH1	chr6	-	chr6:36938466-36940427	chr6:36938471-36940427		chr6:36938466-36938470	chr6:36938465-36938466		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.24	100.00	100.00	0.00	0.363217	0.663989
N	coord_cassette	OCIAD1	chr4	+	chr4:48850464-48859229	chr4:48850464-48851963;chr4:48852100-48853822;chr4:48853993-48859229		chr4:48851964-48852099;chr4:48853823-48853992			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	95.56	100.00	97.22	100.00	NA	100.00	98.00	100.00	100.00	100.00	95.24	93.55	100.00	98.11	100.00	98.36	100.00	100.00	0.00	0.206606	0.643829
K	intron_retention	PAPOLA	chr14	+	chr14:96998758-96998847				chr14:96998757-96998758;chr14:96998847-96998848		2.50	5.17	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	24.14	13.33	6.67	1.96	0.00	1.82	0.00	0.00	0.00	0.897206	1.000000
K	alternative_donor	RHOC	chr1	-	chr1:113247791-113249353;chr1:113247791-113249454	chr1:113247791-113249699		chr1:113249354-113249454;chr1:113249455-113249699	chr1:113249454-113249455;chr1:113249699-113249700		93.85	91.67	87.80	100.00	100.00	100.00	100.00	100.00	100.00	98.20	100.00	100.00	100.00	99.35	100.00	100.00	100.00	100.00	NA	94.23	95.74	95.52	92.86	94.44	100.00	95.24	96.88	100.00	100.00	99.18	96.55	95.00	100.00	100.00	100.00	95.70	100.00	95.89	-4.11	0.393741	0.658590
N	alternative_first_exon	FAM20C	chr7	+	chr7:197391-208897,chr7:197584-208897,chr7:201355-208897;chr7:193805-208897	chr7:195733-208897	chr7:192969-193804	chr7:195554-195732			99.43	100.00	99.38	100.00	96.67	NA	100.00	100.00	100.00	93.69	96.35	95.59	100.00	100.00	100.00	99.32	100.00	97.22	100.00	100.00	96.72	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.53	100.00	100.00	100.00	100.00	100.00	99.08	96.92	100.00	100.00	0.00	0.363217	0.544826
K	jcn_only_AD	ANKRD13D	chr11	+	chr11:67067083-67067297	chr11:67067093-67067297		chr11:67067083-67067092	chr11:67067082-67067083		19.40	23.39	19.67	NA	24.19	NA	12.12	0.00	0.00	NA	12.82	NA	11.76	0.00	5.88	NA	4.08	NA	15.49	10.20	14.29	NA	19.44	18.18	12.50	11.11	17.20	NA	18.37	NA	17.39	23.75	25.25	20.00	21.05	13.04	14.00	10.65	-3.34	0.125145	0.657607
K	mutually_exclusive	MARK2	chr11	+	chr11:63672516-63675731,chr11:63675777-63676348	chr11:63672516-63673559,chr11:63673587-63676348	chr11:63675732-63675776	chr11:63673560-63673586			0.00	0.00	0.00	NA	NA	NA	0.00	5.41	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	NA	3.85	0.00	0.00	0.00	0.00	NA	3.12	6.45	0.00	NA	0.00	0.00	6.06	0.00	0.00	0.00	6.90	0.00	2.84	2.84	0.036553	0.121842
N	jcn_only_AA	TGOLN2	chr2	-	chr2:85549856-85552037;chr2:85549794-85552037;chr2:85545847-85552037	chr2:85549865-85552037		chr2:85545847-85549793;chr2:85549794-85549855;chr2:85549856-85549864	chr2:85545846-85545847;chr2:85549793-85549794;chr2:85549855-85549856		100.00	100.00	98.63	100.00	94.12	100.00	98.26	100.00	97.10	98.51	98.35	98.44	98.56	95.00	96.49	97.22	98.33	100.00	100.00	100.00	100.00	100.00	96.00	95.65	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	96.23	100.00	100.00	0.00	0.746302	0.887098
K	intron_retention	RALGDS	chr9	-	chr9:135975770-135976906				chr9:135975769-135975770;chr9:135976906-135976907		9.09	9.38	8.33	10.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	7.14	1.67	2.86	0.00	0.00	10.00	0.00	10.00	8.77	5.88	NA	8.33	12.82	4.35	3.57	3.23	14.29	8.57	5.26	5.88	12.20	8.33	4.00	8.71	4.71	0.895181	1.000000
K	cassette	TMEM189-UBE2V1,UBE2V1	chr20	-	chr20:48700792-48729643;chr20:48700792-48732021	chr20:48700792-48713208;chr20:48713358-48729643,chr20:48713358-48732021		chr20:48713209-48713357			95.08	100.00	94.00	95.24	94.74	100.00	96.15	97.26	94.59	94.26	95.30	94.68	97.62	94.52	92.47	93.88	93.57	95.40	80.00	85.94	90.00	90.74	95.95	92.73	NA	90.41	93.75	93.75	98.48	95.00	90.70	93.15	100.00	95.95	97.47	96.30	97.62	92.61	-5.01	0.577221	0.835347
K	alternative_donor	NDUFV1	chr11	+	chr11:67375929-67376022	chr11:67375950-67376022		chr11:67375929-67375949	chr11:67375928-67375929		100.00	100.00	100.00	NA	100.00	NA	98.51	100.00	100.00	100.00	98.36	100.00	98.78	100.00	100.00	100.00	100.00	93.75	95.45	100.00	97.06	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	99.39	100.00	0.61	0.154477	0.563271
K	intron_retention	GNPTG	chr16	+	chr16:1402019-1402102				chr16:1402018-1402019;chr16:1402102-1402103		1.98	1.92	4.26	6.25	0.00	0.00	3.41	7.55	7.14	7.14	3.95	1.75	3.45	7.32	5.26	6.41	3.17	2.44	0.00	2.33	1.72	1.39	1.95	1.33	5.17	4.41	3.49	1.56	2.83	3.90	4.05	6.45	2.08	4.69	4.55	3.26	2.75	4.23	1.49	0.397358	1.000000
K	intron_retention	RECQL	chr12	-	chr12:21623281-21623902				chr12:21623280-21623281;chr12:21623902-21623903		8.11	30.00	21.95	21.43	20.00	11.11	4.88	12.12	9.38	8.11	7.50	0.00	6.00	8.00	9.38	6.45	4.23	2.27	25.00	15.15	12.90	8.70	12.50	0.00	0.00	11.36	34.38	7.69	12.12	3.23	11.54	10.20	25.00	14.29	10.20	4.00	15.50	11.45	-4.05	0.829513	1.000000
K	cassette	ZNF410	chr14	+	chr14:74390226-74398205	chr14:74390226-74393809;chr14:74393932-74398205		chr14:74393810-74393931			2.27	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.561554	0.824117
K	cassette	TXNL4A	chr18	-	chr18:77733857-77737597	chr18:77733857-77736717;chr18:77736788-77737597		chr18:77736718-77736787			2.99	2.06	1.23	4.17	6.25	2.60	1.28	0.00	1.54	2.40	2.35	2.22	0.68	0.00	1.25	3.03	1.41	1.16	5.26	2.33	2.44	3.92	4.55	4.44	4.83	0.00	2.53	1.49	3.15	2.94	2.13	3.90	3.80	3.75	4.76	2.82	2.93	1.06	-1.86	0.104050	0.685535
K	intron_retention	AP2A2	chr11	+	chr11:993382-993753				chr11:993381-993382;chr11:993753-993754		2.13	2.92	2.94	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	3.12	0.62	0.00	8.77	2.63	2.38	0.00	1.41	0.00	0.00	3.33	0.00	0.00	1.05	0.00	0.00	1.06	1.06	0.922407	1.000000
K	alternative_acceptor	ARHGDIB	chr12	-	chr12:15100881-15102735	chr12:15100884-15102735		chr12:15100881-15100883	chr12:15100880-15100881		99.40	97.57	99.04	98.68	98.62	100.00	98.99	100.00	100.00	98.56	98.75	97.99	98.91	99.44	95.00	98.91	98.94	98.70	97.06	98.70	98.26	97.77	99.07	99.13	100.00	98.45	98.99	98.25	98.47	98.03	97.87	97.56	99.31	99.17	99.60	98.89	98.95	99.05	0.10	0.557363	0.826728
K	jcn_only_AA	LRRC75A-AS1,PSMB6	chr17	+	chr17:4700865-4701011	chr17:4700865-4700976		chr17:4700977-4701011	chr17:4701011-4701012		96.91	93.31	98.06	95.45	93.75	93.65	95.15	95.52	96.41	95.08	94.49	94.12	100.00	97.60	97.07	96.63	97.25	97.67	92.41	91.55	91.48	92.63	90.91	92.05	100.00	93.18	96.13	93.97	92.93	96.19	93.59	93.58	93.23	95.12	94.04	96.32	94.23	94.56	0.33	0.588402	0.810249
K	intron_retention	PDAP1	chr7	-	chr7:98994364-98995484				chr7:98994363-98994364;chr7:98995484-98995485		1.74	4.23	2.29	3.66	3.31	3.03	1.44	0.00	1.69	0.74	0.72	0.00	1.15	1.37	2.24	0.00	0.00	0.00	3.96	3.45	3.65	3.19	3.87	4.49	13.11	4.76	4.84	0.76	4.02	1.26	4.04	4.79	6.10	2.59	5.08	2.84	4.10	2.60	-1.50	0.569434	1.000000
K	alternative_acceptor	PSMC3	chr11	-	chr11:47447498-47447755	chr11:47447502-47447755		chr11:47447498-47447501	chr11:47447497-47447498		100.00	NA	100.00	NA	100.00	NA	100.00	96.00	100.00	100.00	100.00	100.00	94.74	100.00	96.88	100.00	100.00	100.00	93.33	100.00	96.43	100.00	93.33	100.00	NA	95.24	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	97.37	100.00	2.63	0.478140	0.777631
N	alternative_acceptor	EDEM2	chr20	-	chr20:33705657-33706400;chr20:33703737-33706400	chr20:33703762-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		2.30	1.23	1.22	0.00	0.00	0.00	0.00	3.08	2.38	0.00	5.00	0.00	1.89	0.00	0.00	0.00	4.35	0.00	0.00	1.14	4.00	0.00	2.27	0.00	0.00	1.08	2.47	0.00	3.33	0.00	0.00	0.98	0.00	1.89	3.77	0.00	0.00	1.11	1.11	0.251137	0.707267
N	alternative_acceptor	EPN1	chr19	+	chr19:56186802-56188411;chr19:56186802-56189892	chr19:56186802-56189872		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		2.70	0.00	3.03	NA	0.00	NA	3.03	4.88	2.70	8.57	3.95	0.00	2.56	0.00	3.12	3.57	3.30	0.00	NA	0.00	0.00	0.00	2.44	NA	2.94	0.00	6.45	0.00	3.33	NA	10.00	7.14	7.69	0.00	0.00	0.00	2.94	1.35	-1.59	0.881658	0.960122
N	jcn_only_AD	PPP6R1	chr19	-	chr19:55758478-55769802;chr19:55758478-55763461	chr19:55758478-55767042		chr19:55763462-55767042;chr19:55767043-55769802	chr19:55767042-55767043;chr19:55769802-55769803		24.00	0.00	5.56	NA	NA	NA	11.76	15.79	12.00	16.67	15.79	0.00	20.45	20.83	10.00	0.00	16.67	NA	NA	18.75	NA	NA	0.00	NA	0.00	6.90	0.00	NA	NA	NA	NA	0.00	NA	0.00	0.00	0.00	5.88	18.75	12.87	0.171781	0.657607
K	jcn_only_AD	HSD17B10	chrX	-	chrX:53458543-53458745;chrX:53458543-53458772	chrX:53458543-53458921				chrX:53458211-53458542	0.00	6.80	15.62	9.43	7.56	5.77	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.98	0.00	0.00	8.52	7.69	5.06	12.00	12.94	4.88	8.60	NA	5.26	5.41	3.90	2.94	13.64	18.92	12.93	10.64	15.28	5.26	7.66	0.00	-7.66	0.561166	0.778873
K	cassette	MPC1	chr6	-	chr6:166780380-166783705	chr6:166780380-166780456;chr6:166780673-166783705		chr6:166780457-166780672			0.00	0.00	3.12	NA	5.26	NA	0.00	2.63	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	5.00	0.00	3.70	0.00	NA	4.35	8.70	0.00	0.00	0.00	6.25	9.09	0.00	0.00	2.94	4.17	0.00	3.49	3.49	0.057989	0.601462
K	intron_retention	DAZAP1	chr19	+	chr19:1425960-1428840				chr19:1425959-1425960;chr19:1428840-1428841		7.69	11.76	5.45	17.86	2.13	NA	0.98	0.00	0.00	2.00	2.40	1.61	1.64	3.45	4.85	3.82	0.58	0.00	9.52	5.26	10.00	8.11	4.29	13.16	17.65	15.38	5.17	7.69	6.41	12.50	0.00	5.41	18.75	8.77	12.50	8.33	10.64	4.36	-6.29	0.185062	1.000000
N	cassette	CIAO1	chr2	+	chr2:96934397-96936848	chr2:96934397-96935005;chr2:96935094-96936848		chr2:96935006-96935093			94.12	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	UBXN1	chr11	-	chr11:62445058-62445398				chr11:62445057-62445058;chr11:62445398-62445399		56.00	52.31	64.52	57.45	66.67	55.45	50.00	66.67	62.50	54.55	41.67	NA	43.48	61.54	65.00	60.00	NA	NA	61.40	58.33	66.67	72.73	65.79	80.00	55.84	42.86	68.97	55.00	63.16	69.77	73.33	68.63	68.42	75.00	64.52	76.92	54.08	59.94	5.86	0.995485	1.000000
K	intron_retention	UBXN1	chr11	-	chr11:62444112-62444284				chr11:62444111-62444112;chr11:62444284-62444285		8.70	4.75	7.63	7.31	5.47	5.81	1.30	0.00	1.54	1.56	0.00	2.04	1.18	0.00	3.61	3.03	1.61	0.00	6.74	9.20	7.53	13.11	7.92	8.77	3.44	6.85	9.09	8.33	5.13	7.52	13.10	13.11	9.86	6.12	6.03	8.26	4.09	7.77	3.68	0.926829	1.000000
K	intron_retention	TM2D1	chr1	-	chr1:62147023-62149088				chr1:62147022-62147023;chr1:62149088-62149089		10.53	0.00	7.14	10.00	13.33	13.33	0.00	9.09	0.00	0.00	0.00	7.14	7.69	0.00	8.33	0.00	0.00	0.00	4.76	6.67	0.00	11.76	16.00	7.14	NA	0.00	3.12	9.52	10.00	11.11	NA	4.76	0.00	8.00	4.76	9.09	0.00	6.67	6.67	0.510655	1.000000
K	alternative_acceptor	LILRB2	chr19	-	chr19:54781452-54781742	chr19:54781455-54781742		chr19:54781452-54781454	chr19:54781451-54781452		22.31	14.86	22.30	26.67	25.51	26.23	23.84	28.41	26.48	27.66	22.50	26.83	31.48	34.43	30.68	34.29	34.93	31.81	23.08	21.19	20.26	23.53	22.41	25.00	16.92	22.22	21.28	29.61	25.49	24.40	17.63	17.86	16.48	18.92	16.23	19.86	20.00	22.27	2.27	0.381282	0.709013
K	intron_retention	STAB1	chr3	+	chr3:52535319-52535653				chr3:52535318-52535319;chr3:52535653-52535654		13.46	25.47	9.62	NA	NA	7.14	1.11	0.00	0.00	0.82	1.50	0.00	2.52	1.32	1.79	0.68	1.13	0.39	30.00	5.71	NA	11.63	13.95	5.17	30.75	0.00	7.14	0.00	10.92	1.85	NA	0.00	21.28	5.49	6.25	1.29	23.38	1.32	-22.05	0.101342	1.000000
N	alternative_acceptor	NPL,PEX14	chr1	+	chr1:182783994-182785848	chr1:182783994-182785202		chr1:182785203-182785848	chr1:182785848-182785849		0.74	3.14	0.34	6.90	3.68	14.29	0.00	0.00	0.00	0.40	0.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	3.37	0.68	0.44	0.00	6.52	0.00	0.00	0.00	0.31	0.00	0.75	0.90	4.62	0.96	0.71	0.84	3.88	0.00	-3.88	0.043924	0.570243
K	intron_retention	UNC93B1	chr11	-	chr11:67764256-67765145				chr11:67764255-67764256;chr11:67765145-67765146		4.88	8.33	4.17	NA	NA	NA	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	5.26	5.48	4.76	0.00	2.63	4.76	54.55	8.57	9.09	6.25	0.00	3.12	7.14	7.89	11.11	12.00	4.55	7.46	6.79	5.18	-1.62	0.725706	1.000000
N	alternative_donor		chr7	+	chr7:44807480-44809053;chr7:44808824-44809053;chr7:44805179-44809053	chr7:44808714-44809053		chr7:44805179-44807479;chr7:44807480-44808713;chr7:44808714-44808823	chr7:44805178-44805179;chr7:44807479-44807480;chr7:44808713-44808714		8.33	10.00	7.23	26.09	9.68	6.06	18.18	30.43	29.17	NA	9.09	NA	8.33	32.43	27.27	29.41	42.86	NA	13.95	18.42	17.57	11.11	30.00	36.84	13.95	6.00	3.85	22.22	28.00	4.00	6.52	8.99	6.06	11.11	7.32	10.26	11.97	13.38	1.40	0.351127	0.650093
K	jcn_only_AD	RPS4Y1	chrY	+	chrY:2709669-2710205	chrY:2710015-2710205		chrY:2709669-2710014	chrY:2709668-2709669		9.52	0.00	0.00	0.00	2.38	0.00	0.00	13.04	4.35	2.00	2.74	2.13	2.48	5.56	0.00	0.00	3.85	5.88	0.00	0.00	3.12	4.88	1.22	0.00	0.00	16.67	8.33	0.00	1.05	1.64	12.50	4.44	0.00	5.36	1.67	0.00	0.00	11.01	11.01	0.012799	0.284107
N	cassette	KAT5	chr11	+	chr11:65482382-65484359	chr11:65482382-65484137;chr11:65484279-65484359		chr11:65484138-65484278			95.45	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.14	95.24	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.188294	0.709176
K	intron_retention	CORO7,CORO7-PAM16	chr16	-	chr16:4410365-4410444				chr16:4410364-4410365;chr16:4410444-4410445		2.11	0.00	6.38	0.00	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	3.12	1.19	0.00	0.00	2.27	1.56	0.00	0.00	0.00	4.55	5.17	0.00	1.64	1.39	1.61	0.00	2.19	2.19	0.139363	1.000000
K	alternative_last_exon	POLR1D	chr13	+	chr13:28196147-28206635;chr13:28196147-28222515	chr13:28196147-28197011,chr13:28196147-28196977	chr13:28222516-28222590	chr13:28197012-28197589			51.16	63.00	40.32	79.22	77.30	82.56	57.76	56.00	53.57	62.79	63.83	62.71	61.07	57.14	51.55	71.71	65.96	60.29	70.97	51.28	65.59	61.84	64.41	60.00	79.07	42.86	53.42	73.24	76.60	71.76	62.22	51.28	72.90	62.03	55.95	56.76	66.98	53.64	-13.34	0.008861	0.161746
N	intron_retention		chr16	+	chr16:23678895-23680763				chr16:23678894-23678895;chr16:23680763-23680764		82.50	82.61	92.45	87.18	89.55	89.71	97.22	84.00	85.71	100.00	100.00	100.00	92.86	84.85	87.18	94.83	100.00	95.24	80.85	80.00	81.58	92.86	91.30	88.46	78.18	87.10	85.71	100.00	91.07	88.57	90.91	82.14	85.42	97.22	90.48	85.71	84.02	84.42	0.41	0.243445	1.000000
N	cassette	RAB13	chr1	-	chr1:153955285-153955996;chr1:153955077-153955996	chr1:153955077-153955694,chr1:153955285-153955694;chr1:153955773-153955996		chr1:153955695-153955772			97.73	94.41	97.21	95.56	97.40	97.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.59	100.00	100.00	100.00	100.00	95.83	98.21	100.00	97.37	98.61	100.00	100.00	96.23	97.00	100.00	98.59	100.00	96.30	93.77	95.89	100.00	95.28	96.27	97.94	97.97	0.03	0.801642	0.936947
K	intron_retention	ATF6B	chr6	-	chr6:32086644-32086732				chr6:32086643-32086644;chr6:32086732-32086733		6.82	20.69	19.70	NA	13.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	NA	8.70	21.43	6.67	7.69	7.14	50.00	10.34	8.00	9.09	12.12	0.00	NA	17.50	NA	11.76	12.90	6.45	10.35	6.82	-3.53	0.665704	1.000000
K	intron_retention		chr19	+	chr19:17308668-17308992				chr19:17308667-17308668;chr19:17308992-17308993		1.15	3.53	3.09	NA	0.00	NA	0.00	1.22	0.00	0.00	0.43	0.00	0.51	0.00	0.00	0.00	0.68	0.00	0.00	3.95	0.00	5.26	3.09	2.86	3.33	2.26	3.70	1.43	0.00	0.00	1.72	4.17	6.90	3.66	2.35	2.16	1.92	1.47	-0.45	0.957828	1.000000
K	alternative_donor	SARAF	chr8	-	chr8:29921430-29923543	chr8:29921430-29923503		chr8:29923504-29923543	chr8:29923543-29923544		76.73	76.28	80.92	81.48	88.89	83.33	98.03	96.30	100.00	100.00	98.68	96.83	97.95	97.32	96.82	96.72	98.36	97.66	86.84	88.11	86.41	88.98	87.89	88.08	100.00	95.50	90.78	93.51	96.30	93.33	81.21	85.29	88.76	86.78	92.54	87.60	93.36	91.81	-1.55	0.689631	0.868274
N	alternative_donor		chr3	-	chr3:49395181-49395472;chr3:49395181-49395466;chr3:49395181-49395269;chr3:49395181-49395597	chr3:49395181-49395459		chr3:49395270-49395459;chr3:49395460-49395466;chr3:49395467-49395472;chr3:49395473-49395597	chr3:49395459-49395460;chr3:49395466-49395467;chr3:49395472-49395473;chr3:49395597-49395598		96.55	93.77	96.99	95.13	94.19	94.99	99.53	98.89	98.82	98.90	98.80	98.49	98.53	98.35	98.74	98.76	98.55	99.21	93.16	94.62	98.80	96.55	94.90	96.70	95.59	96.60	95.19	97.72	95.56	96.92	93.92	93.84	94.38	94.79	95.45	96.45	94.98	96.57	1.59	0.632899	0.834022
K	jcn_only_AA	SMPD1,TTC12	chr11	+	chr11:6412147-6412616	chr11:6412147-6412613		chr11:6412614-6412616	chr11:6412616-6412617		100.00	100.00	94.12	NA	NA	NA	95.83	90.62	97.56	92.50	93.48	93.33	96.49	100.00	96.00	93.75	92.86	100.00	NA	91.30	NA	92.86	89.66	95.24	100.00	97.14	96.88	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.00	98.25	98.57	0.32	0.483117	0.741312
N	alternative_donor	NADK	chr1	-	chr1:1688750-1693329;chr1:1688750-1693390	chr1:1688750-1689803		chr1:1689804-1693329;chr1:1693330-1693390	chr1:1693329-1693330;chr1:1693390-1693391		1.92	2.70	3.80	NA	0.00	NA	0.70	0.88	0.46	0.00	0.00	0.00	1.44	1.20	2.66	2.33	0.00	0.00	0.00	1.80	0.00	0.00	0.00	1.67	17.65	1.77	1.75	2.94	0.00	1.61	0.68	0.78	4.17	4.88	2.86	2.17	2.07	1.48	-0.59	0.309644	0.650093
K	coord_cassette	CD4	chr12	+	chr12:6898829-6923307	chr12:6898829-6908045;chr12:6908241-6909237;chr12:6909354-6909472;chr12:6909638-6923307		chr12:6908046-6908240;chr12:6909238-6909353;chr12:6909473-6909637			94.44	91.11	75.00	NA	100.00	NA	91.01	95.45	94.34	95.05	94.30	99.11	88.46	97.06	87.80	96.23	89.81	97.54	NA	93.75	NA	95.71	93.66	97.90	75.00	100.00	72.34	100.00	90.00	100.00	100.00	83.78	66.67	95.80	89.33	94.50	88.46	96.25	7.80	0.042423	0.643829
N	alternative_acceptor	ACIN1	chr14	-	chr14:23532308-23532644;chr14:23532275-23532644;chr14:23532247-23532644	chr14:23532284-23532644		chr14:23532247-23532274;chr14:23532275-23532283;chr14:23532284-23532307	chr14:23532246-23532247;chr14:23532274-23532275;chr14:23532283-23532284		98.46	100.00	94.51	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	NA	100.00	100.00	100.00	98.84	97.67	100.00	98.11	100.00	93.10	100.00	100.00	98.00	98.91	100.00	100.00	100.00	97.53	100.00	99.23	-0.77	0.078078	0.585944
K	alternative_donor	MBD1,TCF4	chr18	-	chr18:47799109-47799217	chr18:47799109-47799193		chr18:47799194-47799217	chr18:47799217-47799218		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	96.00	96.43	100.00	NA	100.00	92.31	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	94.44	96.97	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	alternative_donor	RPS15A	chr16	-	chr16:18800441-18801218;chr16:18800441-18801631	chr16:18800441-18801565		chr16:18801219-18801565;chr16:18801566-18801631	chr16:18801565-18801566;chr16:18801631-18801632		15.22	9.50	16.30	15.34	11.48	12.12	8.25	15.00	13.24	6.03	5.75	6.84	7.57	18.67	15.96	9.03	4.66	5.20	11.22	18.75	10.84	14.06	11.15	10.38	10.91	21.43	15.88	10.98	10.82	12.08	18.99	17.61	13.71	16.79	15.20	13.88	10.21	18.71	8.51	0.000194	0.048293
N	alternative_acceptor	CD36	chr7	+	chr7:80303464-80305455;chr7:80303464-80305044;chr7:80303464-80305423	chr7:80303464-80305699		chr7:80305045-80305423;chr7:80305424-80305455;chr7:80305456-80305699	chr7:80305423-80305424;chr7:80305455-80305456;chr7:80305699-80305700		100.00	91.89	78.26	NA	89.09	NA	95.78	100.00	100.00	95.52	93.35	95.15	90.56	100.00	NA	93.80	89.13	93.33	88.57	NA	96.77	80.90	72.81	78.12	100.00	94.59	82.81	93.70	91.76	97.60	100.00	90.00	92.68	89.81	82.84	91.08	92.28	100.00	7.72	0.020616	0.527491
N	cassette	SLC39A11	chr17	-	chr17:70732859-70943890;chr17:70732859-70943869	chr17:70732859-70845772;chr17:70845944-70943869,chr17:70845944-70943890		chr17:70845773-70845943			100.00	100.00	100.00	NA	NA	NA	98.96	100.00	100.00	100.00	100.00	97.78	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.565953	0.827301
K	coord_cassette	DHRS4L2	chr14	+	chr14:24464343-24473545	chr14:24464343-24470071;chr14:24470143-24470241;chr14:24470294-24470592;chr14:24470727-24473545		chr14:24470072-24470142;chr14:24470242-24470293;chr14:24470593-24470726			3.57	1.25	2.38	0.00	2.94	0.00	18.52	23.08	30.00	5.88	10.34	7.14	14.81	28.57	NA	0.00	12.00	0.00	26.32	36.84	25.71	NA	25.00	NA	23.53	15.38	17.24	NA	12.50	NA	10.00	27.27	26.32	16.67	18.18	7.14	21.02	19.23	-1.79	0.864648	0.955165
K	alternative_donor	LAIR1	chr19	-	chr19:54868229-54868536	chr19:54868229-54868320		chr19:54868321-54868536	chr19:54868536-54868537		4.11	3.70	5.95	13.89	9.52	27.78	1.92	1.77	2.83	1.98	2.35	2.01	2.07	2.50	3.65	2.39	1.46	2.50	15.91	3.00	9.68	4.88	5.41	6.33	22.73	3.55	4.96	8.28	5.58	9.64	4.72	3.03	15.22	6.16	4.65	6.47	9.46	3.27	-6.19	0.111485	0.520337
N	cassette	INPPL1	chr11	+	chr11:71939892-71940508	chr11:71939892-71940133;chr11:71940275-71940508		chr11:71940134-71940274			88.00	100.00	73.91	NA	NA	NA	100.00	93.88	100.00	100.00	100.00	100.00	100.00	93.88	95.00	100.00	98.53	NA	NA	86.96	NA	NA	95.24	80.00	100.00	93.55	86.49	NA	100.00	NA	92.31	93.10	NA	86.67	87.50	86.36	100.00	92.93	-7.07	0.001117	0.112365
N	jcn_only_AA	ANAPC2	chr9	-	chr9:140069968-140070159;chr9:140069925-140070159	chr9:140069921-140070159		chr9:140069921-140069924;chr9:140069925-140069967	chr9:140069920-140069921;chr9:140069924-140069925		0.00	0.00	0.00	0.00	0.00	8.82	0.00	NA	0.00	0.00	22.22	NA	6.67	NA	0.00	0.00	0.00	NA	5.56	0.00	6.82	0.00	0.00	0.00	0.00	18.18	0.00	6.25	0.00	0.00	0.00	0.00	5.56	0.00	0.00	4.55	2.78	0.00	-2.78	0.757619	0.891694
K	intron_retention	PFDN5	chr12	+	chr12:53690336-53691633				chr12:53690335-53690336;chr12:53691633-53691634		71.43	41.54	43.48	41.67	36.51	31.25	NA	NA	0.00	NA	41.67	NA	20.00	NA	18.18	NA	31.25	NA	31.11	50.00	33.33	61.11	55.88	56.25	14.89	38.89	44.12	70.00	57.58	80.00	34.78	40.00	25.53	60.87	46.43	52.17	25.53	44.45	18.91	0.202446	1.000000
N	jcn_only_AD		chr3	-	chr3:127294894-127295027;chr3:127294894-127295451	chr3:127294894-127295459		chr3:127295028-127295451;chr3:127295452-127295459	chr3:127295451-127295452;chr3:127295459-127295460		96.23	98.11	94.87	90.70	97.92	93.33	100.00	100.00	100.00	97.00	97.67	98.74	99.03	100.00	100.00	95.58	97.16	97.58	100.00	95.45	100.00	94.87	94.39	94.95	100.00	100.00	100.00	93.46	96.55	94.95	93.59	91.43	100.00	94.83	100.00	96.84	100.00	98.12	-1.88	0.151328	0.657607
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140002115-140002982;chr9:140002115-140002878;chr9:140002115-140002839	chr9:140002115-140002461		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		5.88	5.56	4.17	0.00	4.60	0.00	2.13	0.00	3.03	0.00	2.56	0.00	4.26	5.88	3.45	0.00	5.71	0.00	3.25	8.00	3.95	0.00	7.14	0.00	5.94	7.14	3.85	0.00	2.38	0.00	6.82	3.57	2.86	3.33	6.52	4.55	3.75	6.35	2.59	0.258315	0.709013
N	jcn_only_AA	CDC26	chr9	-	chr9:116034801-116035608	chr9:116034829-116035608		chr9:116034801-116034828	chr9:116034800-116034801		100.00	100.00	97.56	100.00	97.65	100.00	100.00	94.52	100.00	92.68	100.00	100.00	100.00	94.37	100.00	100.00	96.08	100.00	96.83	97.50	97.96	100.00	96.55	100.00	100.00	96.63	97.47	98.04	95.77	100.00	97.78	100.00	100.00	100.00	96.67	97.50	100.00	97.06	-2.94	0.029921	0.637417
N	jcn_only_AD	ZNF12	chr7	-	chr7:45141214-45141440;chr7:45141214-45141451	chr7:45141214-45141423		chr7:45141424-45141440;chr7:45141441-45141451	chr7:45141440-45141441;chr7:45141451-45141452		100.00	100.00	100.00	94.00	94.55	91.94	94.87	100.00	100.00	95.45	100.00	100.00	100.00	100.00	94.64	94.12	94.44	100.00	88.00	100.00	93.22	93.18	92.45	91.67	86.11	100.00	88.46	94.74	95.65	90.48	92.00	87.50	100.00	96.67	92.00	83.33	97.44	100.00	2.56	0.228180	0.657607
K	jcn_only_AD	MGLL	chr3	-	chr3:127540682-127540828;chr3:127540682-127541926	chr3:127540682-127541151		chr3:127540829-127541151;chr3:127541152-127541926	chr3:127541151-127541152;chr3:127541926-127541927		34.38	35.71	34.29	13.33	16.67	12.00	15.45	21.30	27.08	14.59	12.53	19.08	27.54	27.33	21.90	14.94	15.42	25.61	NA	33.33	15.38	13.22	14.29	20.98	NA	23.16	32.61	12.00	8.93	8.85	13.33	26.32	0.00	14.97	10.95	20.57	21.49	25.24	3.75	0.528280	0.754861
K	cassette	TIMM17B	chrX	-	chrX:48752385-48754041	chrX:48752385-48752634;chrX:48752738-48754041		chrX:48752635-48752737			5.56	0.00	3.57	2.94	2.99	0.00	3.12	3.12	6.25	4.35	8.57	0.00	4.55	5.00	4.76	4.23	3.12	9.09	2.70	4.76	4.08	0.00	1.72	4.55	0.00	3.33	4.84	3.12	0.00	2.44	3.70	4.35	2.94	3.70	2.04	4.35	2.82	4.23	1.41	0.045885	0.538787
N	coord_cassette	CAMLG	chr5	+	chr5:134074483-134086448	chr5:134074483-134076752;chr5:134077214-134079676;chr5:134079743-134086448		chr5:134076753-134077213;chr5:134079677-134079742			70.37	52.17	75.93	NA	85.00	NA	80.00	95.45	92.68	87.50	81.82	75.00	88.89	85.71	83.02	83.72	81.48	100.00	60.00	73.08	70.59	77.78	71.05	75.00	NA	79.31	84.78	100.00	81.48	78.57	53.57	63.16	54.55	84.00	85.19	76.00	60.00	76.19	16.19	0.358309	0.643829
K	intron_retention	PLOD3	chr7	-	chr7:100851006-100852133				chr7:100851005-100851006;chr7:100852133-100852134		4.76	4.08	0.00	0.00	2.33	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	1.39	0.00	0.00	1.96	5.17	2.08	4.00	0.00	3.45	1.59	3.88	0.00	2.86	0.00	0.00	2.82	3.75	0.98	1.11	0.00	-1.11	0.895460	1.000000
K	intron_retention	APOBEC3G	chr22	+	chr22:39482573-39483015				chr22:39482572-39482573;chr22:39483015-39483016		1.52	0.00	0.00	NA	0.00	1.82	0.00	0.56	0.00	NA	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.14	0.00	1.56	0.00	0.00	0.00	2.25	2.31	1.10	0.00	5.26	0.00	2.17	0.00	1.04	1.04	0.068211	1.000000
K	intron_retention	HNRNPDL	chr4	-	chr4:83346037-83347189				chr4:83346036-83346037;chr4:83347189-83347190		37.21	43.97	66.10	29.90	29.06	33.33	10.71	9.68	8.51	3.26	6.45	4.76	14.77	11.43	12.39	4.74	6.96	2.53	28.70	23.91	28.42	38.74	32.74	35.53	43.04	34.21	47.76	21.84	30.36	23.23	54.35	55.77	34.17	38.71	43.53	39.73	31.44	29.06	-2.38	0.559827	1.000000
K	intron_retention	HNRNPC	chr14	-	chr14:21680063-21681227				chr14:21680062-21680063;chr14:21681227-21681228		90.41	100.00	91.91	90.29	94.05	91.95	100.00	100.00	100.00	91.42	88.11	90.72	90.61	89.66	88.55	91.60	89.15	89.68	100.00	90.44	93.16	90.05	90.65	90.29	91.43	92.20	93.37	89.58	86.21	90.85	91.71	87.50	90.91	93.05	91.36	91.55	95.72	91.07	-4.64	0.438685	1.000000
N	cassette	CAMLG	chr5	+	chr5:134074483-134086448;chr5:134074483-134079676	chr5:134074483-134076752;chr5:134077214-134079676,chr5:134077214-134086448		chr5:134076753-134077213			61.11	58.06	70.31	NA	76.00	NA	69.57	85.71	80.70	83.33	66.67	68.42	82.35	84.85	83.33	79.63	80.56	87.50	58.33	67.65	58.33	71.43	61.70	66.67	NA	66.67	72.41	100.00	66.67	72.22	45.95	57.63	44.44	70.59	71.43	64.86	58.33	67.16	8.83	0.507221	0.788365
K	alternative_acceptor	CUX1,SLC4A2	chr7	+	chr7:150769224-150771125	chr7:150769224-150771093		chr7:150771094-150771125	chr7:150771125-150771126		0.00	4.88	4.30	0.00	3.03	NA	0.00	0.00	0.00	0.00	1.16	0.00	1.28	0.95	1.05	0.00	0.00	0.00	0.00	2.20	0.00	0.00	4.00	4.17	0.00	2.00	3.23	0.00	0.00	0.00	1.89	1.28	7.14	1.49	1.59	1.41	0.64	1.42	0.78	0.457981	0.761890
N	alternative_acceptor	MAEA	chr4	+	chr4:1321492-1326544;chr4:1321492-1322421	chr4:1321492-1323664		chr4:1322422-1323664;chr4:1323665-1326544	chr4:1323664-1323665;chr4:1326544-1326545		3.33	4.55	2.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.45	0.00	3.23	1.01	4.76	NA	4.17	2.38	0.00	0.00	0.00	3.57	1.47	0.00	3.85	1.89	6.00	0.00	3.39	3.39	0.389151	0.709013
K	intron_retention	PTGES2	chr9	-	chr9:130884759-130885212				chr9:130884758-130884759;chr9:130885212-130885213		0.00	8.24	5.00	7.14	10.00	10.00	0.00	NA	0.00	0.00	0.00	0.00	4.35	0.00	11.11	3.03	1.72	0.00	4.69	7.69	7.94	NA	14.52	NA	14.63	NA	7.32	0.00	11.36	0.00	9.09	9.09	4.11	11.76	18.52	NA	4.52	3.85	-0.67	0.294214	1.000000
K	alternative_donor	ARPC4,ARPC4-TTLL3	chr3	+	chr3:9834866-9839342;chr3:9834390-9839342	chr3:9834809-9839342		chr3:9834390-9834808;chr3:9834809-9834865	chr3:9834389-9834390;chr3:9834808-9834809		92.86	80.00	87.50	100.00	82.35	NA	85.25	92.75	90.70	93.75	88.80	94.03	86.72	90.00	87.72	92.86	90.91	92.00	77.78	92.11	100.00	93.94	88.00	94.12	84.21	92.50	87.76	94.74	80.36	91.30	87.88	92.50	84.21	94.12	89.09	86.00	84.21	92.31	8.10	0.000839	0.083733
K	alternative_donor	TOM1	chr22	+	chr22:35742963-35743047	chr22:35742966-35743047		chr22:35742963-35742965	chr22:35742962-35742963		8.74	13.48	8.92	9.09	9.74	8.93	9.30	8.20	10.94	9.92	12.04	8.82	9.62	9.20	10.48	10.75	10.17	11.59	7.89	8.11	8.83	10.14	8.02	9.35	3.03	11.02	8.76	8.26	10.28	10.22	7.49	9.28	6.45	6.88	9.23	9.39	8.60	8.47	-0.13	0.752501	0.899031
N	alternative_donor		chr6	-	chr6:86322642-86324736;chr6:86322642-86324556	chr6:86322642-86324698		chr6:86324557-86324698;chr6:86324699-86324736	chr6:86324698-86324699;chr6:86324736-86324737		71.05	81.25	80.77	78.26	76.60	89.19	84.85	77.42	79.55	81.06	81.31	79.69	85.54	79.41	77.50	74.10	79.65	79.63	85.71	69.44	84.44	72.73	75.68	73.68	95.83	79.17	82.22	75.36	81.54	78.79	63.64	68.18	85.42	70.59	72.73	68.35	85.48	74.23	-11.25	0.002892	0.127348
K	alternative_last_exon	RNPC3,UBAP2L	chr1	+	chr1:154234174-154238976	chr1:154234174-154235578	chr1:154238977-154239044	chr1:154235579-154235981			56.16	84.35	45.45	92.86	88.49	98.55	55.36	46.15	38.98	61.40	52.78	60.71	56.25	50.00	35.21	73.13	51.25	55.56	89.80	52.63	82.28	72.58	57.80	53.76	90.72	46.43	46.48	77.42	70.65	79.59	67.53	58.33	89.76	67.80	64.13	65.54	87.06	51.31	-35.74	0.015164	0.181968
K	intron_retention		chr19	+	chr19:40871493-40872325				chr19:40871492-40871493;chr19:40872325-40872326		53.85	42.86	66.67	NA	43.75	NA	69.84	83.56	70.00	65.45	73.61	63.93	62.75	88.89	76.00	52.27	64.06	61.36	NA	59.52	63.64	32.61	43.06	39.73	64.71	57.14	62.22	39.39	39.22	42.86	67.65	57.41	NA	57.14	42.86	47.62	63.73	63.59	-0.14	0.361953	1.000000
K	intron_retention		chr12	+	chr12:53689424-53691633				chr12:53689423-53689424;chr12:53691633-53691634		5.37	6.27	6.85	4.92	6.40	3.66	0.00	0.00	0.00	0.00	1.70	0.00	1.38	0.00	4.76	0.70	1.78	0.00	3.30	7.22	4.05	5.59	6.01	5.59	2.45	9.23	6.43	5.56	8.17	5.62	5.77	5.90	2.58	6.63	5.85	4.78	2.52	5.57	3.06	0.538651	1.000000
N	cassette	ARHGAP17	chr16	-	chr16:24939054-24942104;chr16:24931582-24942104	chr16:24939054-24940933,chr16:24931582-24940933;chr16:24940982-24942104		chr16:24940934-24940981			5.13	4.76	4.92	0.00	3.12	NA	9.09	12.50	2.63	0.00	5.00	7.14	8.16	4.17	4.00	5.88	3.03	0.00	0.00	0.00	0.00	5.00	4.17	0.00	11.11	6.67	5.80	8.00	6.12	3.57	3.70	3.85	2.70	5.13	4.76	7.27	6.46	4.65	-1.81	0.805914	0.936947
N	alternative_acceptor	TYROBP	chr19	-	chr19:36398260-36398347;chr19:36398164-36398347;chr19:36398150-36398347	chr19:36398167-36398347		chr19:36398150-36398163;chr19:36398164-36398166;chr19:36398167-36398259	chr19:36398149-36398150;chr19:36398163-36398164;chr19:36398166-36398167		74.27	72.80	73.86	72.24	72.40	73.04	79.73	78.84	80.09	77.23	77.57	77.01	78.18	78.58	78.06	77.99	75.67	74.62	72.59	72.40	74.28	74.63	74.03	73.62	74.03	76.77	75.60	76.74	76.46	77.06	71.84	70.49	72.22	70.97	73.03	71.91	73.41	75.52	2.11	0.777982	0.917646
N	jcn_only_AA	NR1H2	chr19	+	chr19:50882054-50882258;chr19:50882054-50882348;chr19:50882054-50882343	chr19:50882054-50882390		chr19:50882259-50882343;chr19:50882344-50882348;chr19:50882349-50882390	chr19:50882343-50882344;chr19:50882348-50882349;chr19:50882390-50882391		2.97	6.32	2.65	5.26	3.80	8.00	3.33	0.00	1.44	4.12	8.91	3.51	1.82	3.26	1.92	7.00	9.38	6.98	4.35	0.00	0.00	1.96	4.00	0.00	0.00	3.70	1.87	2.70	5.26	4.76	0.00	2.38	5.45	2.11	0.00	3.23	3.84	1.49	-2.35	0.152629	0.663989
N	alternative_last_exon	MUS81	chr11	+	chr11:72540030-72540326;chr11:72540030-72553661	chr11:72540030-72540347	chr11:72553662-72554719	chr11:72540348-72540680			96.43	98.86	92.50	100.00	99.16	100.00	61.54	NA	57.14	NA	81.82	NA	68.18	NA	60.00	NA	72.73	NA	100.00	96.30	99.03	90.91	95.16	75.00	100.00	100.00	92.54	90.91	95.35	NA	100.00	95.80	98.71	95.00	100.00	76.47	98.78	98.22	-0.57	0.220949	0.441897
K	jcn_only_AD	SVIP	chr11	-	chr11:22849421-22850840;chr11:22849421-22851240	chr11:22849421-22850802		chr11:22850803-22850840;chr11:22850841-22851240	chr11:22850840-22850841;chr11:22851240-22851241		0.00	0.00	0.00	NA	0.00	0.00	2.70	0.00	2.13	2.44	2.22	0.00	4.17	0.00	2.22	3.33	1.85	3.57	NA	NA	4.17	0.00	0.00	NA	0.00	0.00	0.00	7.14	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.190592	0.657607
N	cassette	CD44	chr11	+	chr11:35211613-35232792;chr11:35229754-35236398;chr11:35211613-35236398;chr11:35229754-35232792;chr11:35211613-35232810	chr11:35211613-35231511,chr11:35229754-35231511;chr11:35231602-35232792,chr11:35231602-35236398,chr11:35231602-35232810		chr11:35231512-35231601			2.38	0.00	4.02	18.43	4.28	17.07	0.98	1.58	2.75	19.22	3.27	18.54	1.84	3.86	5.83	25.63	7.83	28.07	0.76	1.80	3.10	11.56	5.15	18.95	0.00	2.19	5.70	18.76	6.61	21.93	1.67	5.05	0.97	12.79	6.42	17.81	0.86	2.00	1.13	0.008102	0.278912
N	jcn_only_AA	MRPS11	chr15	+	chr15:89015957-89018340;chr15:89015957-89018260	chr15:89015957-89018402		chr15:89018261-89018340;chr15:89018341-89018402	chr15:89018340-89018341;chr15:89018402-89018403		0.00	0.00	5.77	6.90	5.63	0.00	4.17	6.90	1.75	1.75	3.23	6.06	3.17	0.00	2.53	3.23	4.00	0.00	7.89	0.00	2.38	9.38	3.03	2.56	0.00	0.00	3.39	2.44	1.49	2.86	0.00	2.99	4.76	6.90	2.22	2.94	3.67	0.00	-3.67	0.225262	0.663989
N	cassette	ATXN2L	chr16	+	chr16:28847444-28848068;chr16:28847498-28848048;chr16:28847444-28848071;chr16:28847498-28848071;chr16:28847444-28848048	chr16:28847444-28847769,chr16:28847498-28847769;chr16:28847807-28848068,chr16:28847807-28848071,chr16:28847807-28848048		chr16:28847770-28847806			39.13	7.14	14.81	16.67	5.00	29.63	21.43	15.38	16.98	36.36	25.53	36.00	33.33	22.22	11.67	36.36	29.79	32.00	9.52	31.58	19.23	16.67	13.04	30.77	0.00	25.00	10.34	18.18	12.90	21.74	23.53	26.67	10.71	14.29	11.11	27.59	10.12	24.27	14.15	0.063875	0.621473
K	intron_retention	RNF31	chr14	+	chr14:24626848-24627106				chr14:24626847-24626848;chr14:24627106-24627107		8.43	5.88	10.71	3.45	5.13	5.08	0.00	2.38	2.38	0.00	0.00	0.00	0.00	0.00	4.08	0.00	2.94	2.70	2.22	6.25	5.26	11.11	7.14	10.71	2.63	7.14	9.09	3.33	3.70	6.94	6.10	4.39	6.38	7.50	7.14	5.88	2.42	6.17	3.75	0.606822	1.000000
N	coord_cassette	CCM2	chr7	+	chr7:45067397-45113058	chr7:45067397-45103516;chr7:45103601-45104061;chr7:45104246-45108041;chr7:45108179-45109424;chr7:45109561-45113058		chr7:45103517-45103600;chr7:45104062-45104245;chr7:45108042-45108178;chr7:45109425-45109560			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention		chr12	+	chr12:62785210-62785595				chr12:62785209-62785210;chr12:62785595-62785596		3.26	0.00	5.26	0.00	0.00	NA	0.00	1.00	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	3.80	NA	2.19	3.08	2.22	0.00	0.00	2.99	3.45	NA	9.52	0.00	4.72	0.00	2.59	2.59	0.070905	1.000000
N	alternative_donor	SH3BP1	chr22	+	chr22:38040968-38041371	chr22:38041052-38041371		chr22:38040968-38041051	chr22:38040967-38040968		0.00	0.00	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.72	NA	0.00	0.00	0.00	0.00	0.56	0.00	0.00	1.33	0.00	0.00	0.00	NA	8.33	1.52	1.27	NA	0.00	NA	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.546279	0.780071
K	intron_retention	ADAMTSL4	chr1	+	chr1:150532382-150532535				chr1:150532381-150532382;chr1:150532535-150532536		2.27	0.00	25.00	NA	0.00	NA	0.00	2.70	2.08	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	15.79	0.00	NA	0.00	NA	0.00	7.41	4.55	0.00	0.00	0.00	NA	10.00	NA	NA	0.00	25.00	0.00	2.70	2.70	0.220598	1.000000
K	alternative_first_exon	RHOG	chr11	-	chr11:3849437-3861378,chr11:3849437-3861991;chr11:3849437-3862123;chr11:3849437-3861797;chr11:3849437-3851757	chr11:3849437-3859033	chr11:3862124-3862213;chr11:3861798-3862072;chr11:3851758-3851881	chr11:3859034-3859097			0.63	0.00	0.57	0.00	0.00	0.00	1.08	0.00	0.53	0.56	0.43	0.37	1.26	0.00	0.89	0.60	0.78	0.00	6.45	1.59	1.19	0.00	1.33	0.86	0.00	0.50	0.00	0.00	0.00	0.00	0.00	0.84	0.00	1.35	1.01	1.57	0.54	0.25	-0.29	0.377249	0.550412
N	cassette	MVB12A	chr19	+	chr19:17517106-17534501	chr19:17517106-17534306;chr19:17534427-17534501		chr19:17534307-17534426			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	VAC14	chr16	-	chr16:70806076-70814692	chr16:70806076-70808041		chr16:70808042-70814692	chr16:70814692-70814693		0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	2.17	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.204992	0.657607
N	jcn_only_AA	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660770;chr9:35660645-35660742	chr9:35660645-35660767		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		0.00	0.71	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	1.10	0.00	1.10	3.45	1.28	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	2.21	0.00	0.00	0.00	0.35	0.00	-0.35	0.122426	0.663989
K	cassette	ENSA	chr1	-	chr1:150598285-150599942	chr1:150598285-150598954;chr1:150599003-150599942		chr1:150598955-150599002			2.67	0.99	1.75	0.00	1.39	2.13	3.30	2.56	2.09	3.88	3.59	2.73	4.38	2.91	2.99	4.69	5.48	4.59	0.00	3.08	0.00	1.41	3.79	1.10	0.00	3.41	0.00	3.66	2.82	2.15	2.04	1.96	1.67	1.33	1.29	2.17	1.33	2.79	1.46	0.214768	0.709176
K	cassette	BAD	chr11	-	chr11:64039276-64051653	chr11:64039276-64044375;chr11:64044516-64051653		chr11:64044376-64044515			0.00	3.17	4.88	NA	2.56	0.00	5.26	3.70	2.56	0.00	3.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	NA	5.56	NA	3.23	0.00	2.27	NA	0.00	NA	0.00	5.00	2.17	NA	0.00	0.00	2.67	0.00	-2.67	0.137910	0.709176
K	intron_retention	CYC1	chr8	+	chr8:145152038-145152134				chr8:145152037-145152038;chr8:145152134-145152135		4.07	0.78	5.88	2.44	1.39	2.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.20	2.38	2.73	2.83	1.68	3.06	1.06	0.00	0.81	0.00	1.31	0.84	8.62	4.07	4.79	1.54	2.15	2.13	0.92	1.19	0.27	0.944245	1.000000
K	intron_retention		chr20	-	chr20:34214726-34215201				chr20:34214725-34214726;chr20:34215201-34215202		7.38	8.39	10.32	10.00	10.56	8.64	14.29	NA	7.69	NA	NA	NA	6.67	8.82	7.04	4.17	6.45	0.00	10.53	11.76	9.73	19.05	20.22	15.56	8.23	9.68	13.39	18.60	18.42	15.19	10.29	18.87	11.21	21.57	19.30	16.67	9.46	9.68	0.22	0.657443	1.000000
K	intron_retention	E2F4	chr16	+	chr16:67228884-67229684				chr16:67228883-67228884;chr16:67229684-67229685		8.51	8.33	8.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	6.67	5.88	5.13	1.82	8.57	NA	6.90	7.32	0.00	2.00	2.86	11.11	8.33	7.69	7.69	4.17	10.00	0.00	6.79	6.79	0.804354	1.000000
N	alternative_donor	XPC	chr3	-	chr3:14188880-14189407	chr3:14188880-14189058		chr3:14189059-14189407	chr3:14189407-14189408		6.06	3.92	7.79	NA	3.57	NA	0.00	0.00	2.04	0.00	0.00	NA	0.00	0.00	2.00	0.00	0.00	NA	4.00	6.06	2.00	8.00	7.14	18.75	0.00	6.67	7.89	0.00	3.70	NA	10.26	4.72	3.03	11.11	5.88	16.00	1.51	6.06	4.54	0.145717	0.560769
K	alternative_donor	COX7C	chr5	+	chr5:85914148-85915169;chr5:85913871-85915169	chr5:85913948-85915169		chr5:85913871-85913947;chr5:85913948-85914147	chr5:85913870-85913871;chr5:85913947-85913948		88.92	84.15	89.84	87.28	86.16	85.93	88.32	90.87	89.25	86.46	89.40	89.39	87.99	86.17	89.56	85.11	86.24	89.14	86.82	85.38	89.08	84.18	84.04	87.32	84.41	89.53	87.61	86.61	83.40	87.34	84.50	85.87	84.64	87.30	86.90	88.59	85.73	87.55	1.82	0.274928	0.645608
K	cassette	KIAA1429	chr8	-	chr8:95502311-95504879	chr8:95502311-95503805;chr8:95504138-95504879		chr8:95503806-95504137			92.31	100.00	97.62	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	95.00	100.00	100.00	100.00	94.74	100.00	100.00	94.74	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	0.00	0.400279	0.715834
N	jcn_only_AA	PLA2G4C	chr19	-	chr19:48565410-48571047;chr19:48568294-48571047	chr19:48565452-48571047		chr19:48565410-48565451;chr19:48565452-48568293	chr19:48565409-48565410;chr19:48565451-48565452		0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	3.33	0.00	10.00	9.68	11.11	0.00	5.00	4.76	0.00	0.00	13.04	4.76	4.44	0.00	2.86	5.13	3.33	0.00	1.67	1.67	0.081642	0.663989
K	jcn_only_AA	WBP2	chr17	-	chr17:73843679-73843876	chr17:73843691-73843876		chr17:73843679-73843690	chr17:73843678-73843679		97.90	100.00	100.00	100.00	100.00	83.33	100.00	100.00	100.00	99.04	100.00	98.77	99.39	99.32	100.00	98.20	100.00	99.38	100.00	96.36	100.00	100.00	97.83	100.00	100.00	98.72	100.00	97.22	100.00	100.00	97.89	98.89	96.00	99.18	100.00	100.00	100.00	98.31	-1.69	0.325866	0.663989
K	intron_retention	MIEN1	chr17	-	chr17:37886545-37886659				chr17:37886544-37886545;chr17:37886659-37886660		5.00	0.00	3.64	0.00	6.76	0.00	2.31	1.45	0.93	1.41	1.12	2.13	2.27	2.47	3.23	2.52	0.91	0.00	1.64	0.00	3.30	4.55	3.19	0.00	0.00	0.00	5.17	4.69	3.05	0.00	0.00	3.92	0.00	3.45	6.52	1.89	0.82	0.72	-0.09	0.704912	1.000000
K	intron_retention	NELFE	chr6	-	chr6:31922670-31922835				chr6:31922669-31922670;chr6:31922835-31922836		0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	3.64	3.03	0.00	3.12	3.23	2.86	0.00	6.67	7.69	1.64	0.00	5.13	4.44	2.44	0.00	0.00	0.00	0.476830	1.000000
K	alternative_acceptor	PHF23	chr17	-	chr17:7140082-7140703;chr17:7139886-7140703	chr17:7140087-7140703		chr17:7139886-7140081;chr17:7140082-7140086	chr17:7139885-7139886;chr17:7140081-7140082		89.80	100.00	93.48	NA	82.76	NA	90.32	94.34	89.19	81.63	79.31	81.82	88.00	97.83	91.18	90.70	84.75	81.82	NA	88.89	73.68	81.25	84.09	NA	100.00	90.20	86.96	83.33	80.56	NA	93.55	83.64	83.33	90.62	86.05	86.67	90.32	91.88	1.56	0.977832	0.994346
N	jcn_only_AD	C11orf73	chr11	+	chr11:86048573-86055644;chr11:86048535-86055644	chr11:86055563-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	SGF29	chr16	+	chr16:28601988-28602093	chr16:28601988-28602067		chr16:28602068-28602093	chr16:28602093-28602094		4.35	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	5.13	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.720891	0.895448
K	intron_retention		chr3	+	chr3:49060410-49060488				chr3:49060409-49060410;chr3:49060488-49060489		2.11	0.00	2.46	1.15	1.16	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.00	0.75	0.68	0.00	1.59	2.50	2.53	1.59	3.12	2.91	1.64	0.00	0.00	2.61	0.00	0.00	0.00	5.62	2.94	4.76	1.06	3.74	0.82	0.39	1.05	0.66	0.941346	1.000000
N	alternative_acceptor	METTL17	chr14	+	chr14:21464871-21464970;chr14:21464871-21464943	chr14:21464871-21464928		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		15.38	19.54	21.74	26.32	19.64	20.00	NA	NA	NA	NA	NA	NA	16.67	NA	NA	NA	27.27	NA	18.99	23.08	23.40	NA	21.62	NA	20.51	20.00	22.22	NA	26.67	NA	20.00	20.69	19.28	13.33	22.73	25.00	19.28	20.00	0.72	0.736633	0.902878
K	jcn_only_AA	CNIH4	chr1	+	chr1:224559126-224566770	chr1:224559126-224563496		chr1:224563497-224566770	chr1:224566770-224566771		94.68	100.00	96.36	100.00	97.75	100.00	100.00	95.77	94.81	98.36	98.15	100.00	100.00	95.24	97.26	100.00	100.00	97.14	100.00	98.13	98.41	94.55	97.22	92.31	100.00	95.80	95.62	96.15	98.00	95.65	95.73	93.62	100.00	100.00	96.67	96.23	100.00	95.75	-4.25	0.000364	0.115732
K	intron_retention	ARAP1	chr11	.	chr11:72404851-72406024				chr11:72404850-72404851;chr11:72406024-72406025		0.00	0.00	1.49	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	1.00	2.22	5.47	0.00	1.03	1.10	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.93	0.00	0.00	0.00	0.594508	1.000000
N	cassette	DRAM2	chr1	-	chr1:111665266-111668848;chr1:111663316-111668848;chr1:111663214-111668848	chr1:111663214-111667363,chr1:111665266-111667363,chr1:111663316-111667363;chr1:111667504-111668848		chr1:111667364-111667503			89.52	100.00	93.29	100.00	86.67	NA	94.77	93.68	90.48	95.71	94.03	97.50	93.44	95.45	93.10	98.18	95.00	95.00	100.00	87.84	95.12	100.00	93.02	93.02	NA	93.67	90.74	93.33	94.19	93.55	82.35	92.42	94.44	88.89	95.00	92.45	94.77	91.59	-3.17	0.035484	0.472093
K	cassette	MYO18A	chr17	-	chr17:27409457-27413953	chr17:27409457-27413455;chr17:27413596-27413953		chr17:27413456-27413595			100.00	100.00	97.62	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	NA	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.35	95.89	100.00	100.00	100.00	92.50	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	IL4I1	chr19	-	chr19:50398438-50399140;chr19:50398438-50399182	chr19:50398438-50399071		chr19:50399072-50399140;chr19:50399141-50399182	chr19:50399140-50399141;chr19:50399182-50399183		92.86	89.66	94.23	90.91	95.92	97.83	94.94	94.27	96.06	94.12	95.86	96.01	100.00	94.53	95.22	92.91	96.55	94.91	100.00	95.93	96.32	96.25	94.51	92.38	NA	95.39	94.14	100.00	91.67	96.14	94.90	95.68	100.00	95.95	93.20	92.47	100.00	94.72	-5.28	0.336832	0.650093
K	intron_retention	NELFCD	chr20	+	chr20:57566131-57566366				chr20:57566130-57566131;chr20:57566366-57566367		58.82	36.67	33.33	NA	31.25	NA	26.92	92.86	48.48	29.73	24.14	37.50	18.75	88.89	34.38	21.74	20.37	19.23	54.55	60.00	53.85	50.00	38.89	38.89	NA	91.30	58.33	50.00	38.10	62.50	NA	21.05	25.00	20.00	20.00	31.82	26.92	88.89	61.97	0.006852	1.000000
K	intron_retention		chr17	-	chr17:4688955-4689251				chr17:4688954-4688955;chr17:4689251-4689252		19.50	13.60	32.20	20.00	18.99	18.69	25.71	24.00	20.00	40.00	27.78	13.33	18.75	19.23	NA	NA	NA	NA	39.13	38.64	42.86	NA	NA	NA	41.57	44.20	58.33	NA	45.45	40.00	12.55	16.13	10.88	24.00	21.05	16.13	22.23	21.75	-0.48	0.932956	1.000000
K	intron_retention	ADIRF	chr10	+	chr10:88730020-88730232				chr10:88730019-88730020;chr10:88730232-88730233		NA	3.39	NA	0.00	2.94	1.14	8.33	6.67	4.35	1.28	5.41	1.47	4.65	11.11	0.00	0.00	2.44	0.41	1.16	8.33	0.00	0.00	6.12	2.15	3.69	12.12	0.00	1.10	0.58	0.41	9.09	11.11	3.45	5.88	18.75	4.84	3.57	9.09	5.52	0.469767	1.000000
K	intron_retention		chr17	-	chr17:74716581-74717879				chr17:74716580-74716581;chr17:74717879-74717880		22.45	11.11	17.74	18.75	10.20	8.33	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	4.55	0.00	3.45	0.00	7.14	14.71	10.17	25.00	14.29	25.00	33.33	14.71	12.50	17.65	7.14	14.63	24.00	23.08	23.81	14.63	22.22	31.03	9.12	14.71	5.59	0.444796	1.000000
K	cassette	GPX4	chr19	+	chr19:1105809-1106398	chr19:1105809-1106179;chr19:1106266-1106398		chr19:1106180-1106265			98.31	94.89	95.00	94.74	93.83	96.12	98.69	96.64	95.87	98.95	98.50	98.60	98.81	98.39	93.00	98.91	95.92	98.31	96.17	94.68	95.71	95.33	95.72	97.64	94.98	96.94	97.21	97.48	97.95	98.62	94.56	92.37	94.49	95.24	97.17	97.39	95.58	96.79	1.21	0.818036	0.940342
N	jcn_only_AD	CIRBP	chr19	+	chr19:1271365-1271549;chr19:1271389-1271549	chr19:1271467-1271549		chr19:1271365-1271388;chr19:1271389-1271466	chr19:1271364-1271365;chr19:1271388-1271389		69.23	62.50	66.67	NA	72.22	NA	75.00	71.43	75.00	73.33	61.54	76.92	70.00	81.25	78.57	84.00	73.33	66.67	82.61	64.29	51.72	70.00	75.00	41.67	83.33	60.00	58.33	77.78	72.73	80.00	59.52	51.72	42.86	NA	56.25	82.61	72.50	66.76	-5.74	0.808967	0.910055
N	cassette	ACAP1	chr17	+	chr17:7251795-7253263	chr17:7251795-7252313;chr17:7252487-7253263		chr17:7252314-7252486			100.00	80.00	90.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	100.00	91.67	100.00	NA	NA	NA	100.00	100.00	87.50	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.530224	0.804982
K	intron_retention	GNAS	chr20	+	chr20:57464409-57470666				chr20:57464408-57464409;chr20:57470666-57470667		19.23	0.00	35.29	NA	7.14	NA	0.00	8.33	8.33	2.44	0.00	3.12	5.56	NA	NA	0.00	2.70	6.25	9.09	13.64	NA	6.67	6.02	0.00	NA	16.67	18.18	11.76	6.90	0.00	6.67	36.36	NA	13.89	18.75	4.17	2.78	13.64	10.86	0.894833	1.000000
K	intron_retention	PVRL2	chr19	+	chr19:45377720-45381629				chr19:45377719-45377720;chr19:45381629-45381630		93.18	72.34	87.42	90.79	83.64	87.07	94.12	87.55	89.96	90.72	89.13	86.67	89.29	92.69	91.82	90.00	87.50	85.48	82.35	82.31	83.76	82.05	82.61	80.00	92.31	88.14	89.42	82.98	84.91	85.52	86.12	82.93	83.33	88.24	85.19	88.37	86.31	87.84	1.53	0.592150	1.000000
K	intron_retention	SMARCA4	chr19	+	chr19:11145809-11151982				chr19:11145808-11145809;chr19:11151982-11151983		0.00	0.00	5.88	NA	0.00	27.27	0.00	9.09	5.56	3.23	0.00	0.00	0.00	NA	3.03	6.06	0.00	0.00	23.08	6.25	0.00	0.00	11.11	NA	0.00	NA	10.34	5.00	3.03	0.00	0.00	4.55	9.52	0.00	0.00	8.00	0.00	3.12	3.12	0.774408	1.000000
N	cassette	AD000671.6,IGFLR1	chr19	-	chr19:36230528-36231924;chr19:36230528-36231280	chr19:36230528-36230610;chr19:36230990-36231280,chr19:36230990-36231924		chr19:36230611-36230989			56.80	40.58	55.41	42.96	48.23	32.31	80.53	82.14	81.31	80.00	84.02	75.61	83.98	72.58	73.11	81.71	83.64	85.71	40.06	51.79	56.41	41.82	44.67	43.48	43.42	67.44	70.61	77.48	66.21	69.39	45.34	65.34	36.66	49.69	51.58	48.76	42.00	62.12	20.12	0.443968	0.746907
K	alternative_donor	NDUFB10	chr16	+	chr16:2011260-2011497	chr16:2011293-2011497		chr16:2011260-2011292	chr16:2011259-2011260		100.00	97.21	96.72	94.59	96.88	96.15	97.59	91.30	95.56	96.00	97.27	96.77	95.70	100.00	100.00	95.45	97.22	96.15	96.45	96.97	96.26	100.00	97.20	100.00	100.00	100.00	96.77	96.55	96.15	100.00	100.00	98.46	96.98	100.00	100.00	95.00	97.09	100.00	2.91	0.656933	0.846001
N	jcn_only_AD	ANKRD13D	chr11	+	chr11:67067971-67068460;chr11:67068367-67068460	chr11:67067595-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		96.81	91.37	97.01	81.25	94.17	NA	100.00	100.00	100.00	NA	93.75	NA	100.00	100.00	93.33	NA	100.00	NA	94.40	96.72	93.06	100.00	95.45	87.50	97.48	92.86	95.10	90.00	94.92	NA	92.11	95.24	94.34	93.75	95.95	88.57	95.94	96.77	0.83	0.940463	0.966862
N	alternative_acceptor		chr11	+	chr11:67811121-67811264;chr11:67811121-67811311	chr11:67811121-67811280		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		86.21	97.92	79.75	81.82	96.43	NA	100.00	97.20	95.00	97.78	96.35	100.00	97.20	94.12	93.10	94.92	94.34	98.00	90.91	87.39	90.70	85.00	88.61	95.00	92.31	83.94	85.32	84.09	88.24	82.61	81.82	83.53	73.91	82.67	87.18	83.54	94.75	86.80	-7.95	0.455572	0.760489
K	alternative_last_exon	RP11-864I4.1,TUT1	chr11	-	chr11:62342602-62344128;chr11:62342381-62344128	chr11:62343717-62344128	chr11:62340056-62342380	chr11:62342517-62343716			61.54	71.79	56.82	65.38	56.60	82.35	23.53	57.14	60.00	23.64	23.08	15.91	25.42	57.14	57.58	27.27	22.22	12.12	76.27	64.00	76.79	35.71	39.66	26.67	82.35	58.82	57.89	29.63	34.69	43.24	70.37	66.67	75.00	27.03	31.37	30.51	73.40	60.18	-13.22	0.835825	0.904135
N	cassette	CHMP5	chr9	+	chr9:33267898-33271149	chr9:33267898-33270620;chr9:33270715-33271149		chr9:33270621-33270714			99.68	100.00	100.00	100.00	100.00	100.00	100.00	99.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	99.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	100.00	100.00	100.00	100.00	99.84	-0.16	0.480038	0.771310
N	jcn_only_AA	VPS33B	chr15	-	chr15:91548350-91548609	chr15:91548512-91548609		chr15:91548350-91548511	chr15:91548349-91548350		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	8.70	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	10.53	8.33	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AD	PPCS	chr1	+	chr1:42924977-42925273;chr1:42923239-42925273	chr1:42923022-42925273		chr1:42923022-42923238;chr1:42923239-42924976	chr1:42923021-42923022;chr1:42923238-42923239		100.00	100.00	96.23	NA	96.88	NA	100.00	97.92	96.72	87.50	90.00	100.00	96.05	95.24	94.92	97.50	96.77	100.00	100.00	94.29	100.00	100.00	94.87	100.00	100.00	95.00	95.12	81.82	100.00	100.00	100.00	100.00	100.00	100.00	96.43	94.44	100.00	96.58	-3.42	0.103635	0.643330
K	intron_retention	TMEM126B	chr11	+	chr11:85345324-85346710				chr11:85345323-85345324;chr11:85346710-85346711		0.00	0.00	4.76	0.00	3.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	4.76	0.00	0.00	0.00	4.17	0.00	0.00	2.27	9.38	NA	0.00	11.11	0.00	4.17	2.94	5.26	3.03	0.00	0.00	8.33	4.26	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA		chr19	+	chr19:35524644-35528066;chr19:35524644-35525948;chr19:35524644-35530101	chr19:35524644-35530020		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		89.77	100.00	93.16	89.19	100.00	96.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	92.31	100.00	95.59	100.00	91.18	100.00	81.08	93.88	100.00	97.96	88.64	100.00	89.83	92.68	97.44	100.00	93.55	88.52	89.38	100.00	94.12	100.00	89.69	100.00	89.80	-10.20	0.011333	0.486024
K	intron_retention		chr2	-	chr2:74733185-74733307				chr2:74733184-74733185;chr2:74733307-74733308		17.65	20.45	16.00	9.09	9.09	9.09	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	6.25	8.33	NA	4.35	13.33	3.85	15.38	13.79	NA	21.74	0.00	24.14	NA	20.00	6.67	15.38	16.67	0.00	12.50	12.50	11.11	2.17	14.36	12.18	0.699134	1.000000
N	intron_retention		chr16	-	chr16:88709980-88710655				chr16:88709979-88709980;chr16:88710655-88710656		100.00	100.00	92.00	100.00	91.30	90.91	NA	NA	NA	NA	NA	NA	NA	78.57	NA	NA	NA	NA	90.91	92.86	93.75	100.00	90.32	100.00	88.24	100.00	92.31	100.00	95.45	89.66	100.00	96.55	86.67	84.62	100.00	92.59	89.57	100.00	10.43	0.697944	1.000000
N	jcn_only_AD	TRIM38	chr6	+	chr6:25975905-25983391;chr6:25973514-25983391;chr6:25975159-25983391	chr6:25982126-25983391		chr6:25973514-25975158;chr6:25975159-25975904;chr6:25975905-25982125	chr6:25973513-25973514;chr6:25975158-25975159;chr6:25975904-25975905		0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	11.11	6.06	0.00	2.13	0.00	0.00	0.00	0.00	6.90	0.00	1.31	0.00	0.00	0.00	3.33	0.00	2.31	2.22	4.65	0.00	1.41	1.83	0.00	0.00	0.00	3.39	2.17	0.00	1.02	1.02	0.139056	0.657607
N	alternative_donor	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095591;chr10:74094376-74095543	chr10:74094376-74095537		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		65.38	47.27	46.81	40.00	54.35	61.02	50.00	59.38	43.24	54.84	46.34	65.22	58.06	62.07	55.26	57.14	57.50	66.67	50.00	62.96	61.11	60.00	45.95	63.16	65.31	56.00	57.89	48.00	55.17	61.29	58.33	57.50	38.78	65.38	55.26	48.72	50.00	60.73	10.73	0.059601	0.421463
N	alternative_acceptor	MARCO	chr2	+	chr2:119739987-119748164	chr2:119739987-119740187		chr2:119740188-119748164	chr2:119748164-119748165		0.96	NA	2.78	0.00	NA	7.69	0.00	0.17	0.00	1.67	0.00	1.45	0.00	0.14	0.00	2.33	0.00	1.85	0.00	0.96	0.51	NA	0.00	15.38	0.00	0.31	1.52	3.70	0.00	1.79	NA	0.00	0.00	0.00	0.00	8.00	0.00	0.31	0.31	0.052972	0.570243
N	cassette	ABHD12	chr20	-	chr20:25297715-25303960	chr20:25297715-25300834;chr20:25300955-25303960		chr20:25300835-25300954			97.06	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	96.00	100.00	100.00	100.00	98.98	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	98.82	100.00	98.53	-1.47	0.181986	0.709176
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400787-46401041;chr11:46400787-46401003;chr11:46400787-46401044	chr11:46400787-46401018		chr11:46401004-46401018;chr11:46401019-46401041;chr11:46401042-46401044	chr11:46401018-46401019;chr11:46401041-46401042;chr11:46401044-46401045		95.45	92.86	96.67	100.00	91.43	NA	92.31	81.08	92.86	NA	90.62	NA	100.00	77.14	92.31	NA	96.67	NA	96.08	90.91	95.92	NA	96.77	NA	94.03	84.21	94.29	NA	92.31	NA	88.89	94.87	95.38	NA	94.74	100.00	94.70	86.55	-8.16	0.022198	0.534659
N	jcn_only_AD	COA6	chr1	+	chr1:234513356-234519468;chr1:234510022-234519468	chr1:234510136-234519468		chr1:234510022-234510135;chr1:234510136-234513355	chr1:234510021-234510022;chr1:234510135-234510136		98.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	98.68	100.00	100.00	100.00	98.75	100.00	100.00	99.35	-0.65	0.114403	0.646283
K	alternative_acceptor	HAGH	chr16	-	chr16:1859384-1859754	chr16:1859448-1859754		chr16:1859384-1859447	chr16:1859383-1859384		0.00	0.00	0.00	0.00	0.00	0.00	2.38	2.50	2.74	2.94	2.97	1.89	3.12	4.44	4.29	1.61	2.30	2.38	1.56	8.00	4.83	5.26	2.60	0.00	0.68	4.76	2.82	0.00	2.83	2.63	5.26	6.76	5.19	3.57	5.26	3.33	1.97	4.60	2.63	0.169078	0.660713
K	intron_retention		chr11	+	chr11:60157070-60160157				chr11:60157069-60157070;chr11:60160157-60160158		6.14	16.84	4.90	22.22	12.26	18.60	2.30	2.18	1.56	1.05	2.44	1.29	3.72	4.90	NA	6.00	4.69	3.64	19.33	4.26	7.50	5.56	4.92	2.11	31.67	4.23	2.86	9.80	8.59	2.70	3.30	3.57	12.99	5.88	5.99	4.76	14.91	4.25	-10.67	0.097408	1.000000
N	jcn_only_AD	MRGBP	chr20	+	chr20:61428565-61429938	chr20:61428584-61429938		chr20:61428565-61428583	chr20:61428564-61428565		100.00	100.00	100.00	100.00	90.48	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.33	100.00	NA	94.12	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
K	cassette	REPS1	chr6	-	chr6:139226270-139229804	chr6:139226270-139228631;chr6:139228738-139229804		chr6:139228632-139228737			92.00	100.00	100.00	88.00	90.24	94.12	81.25	NA	91.67	93.33	100.00	NA	100.00	100.00	86.67	68.42	86.67	NA	97.73	94.12	93.33	94.12	92.31	NA	100.00	95.00	95.24	90.91	93.10	81.82	100.00	90.00	93.33	93.10	96.88	85.71	98.87	95.00	-3.87	0.813026	0.937478
K	intron_retention		chr1	+	chr1:12081898-12082151				chr1:12081897-12081898;chr1:12082151-12082152		0.00	0.00	13.64	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	1.09	0.00	0.00	0.00	0.00	3.33	3.85	NA	0.00	5.00	0.00	0.00	0.00	0.00	5.56	0.00	11.76	5.56	5.88	NA	NA	0.00	0.00	0.96	0.96	0.830394	1.000000
N	jcn_only_AA	EDEM2	chr20	-	chr20:33705657-33706400;chr20:33703762-33706400	chr20:33703737-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		93.18	100.00	95.06	95.00	95.83	100.00	100.00	91.18	89.13	100.00	93.44	100.00	94.44	98.28	97.44	96.30	91.67	97.22	94.55	92.39	93.14	100.00	95.45	100.00	100.00	94.74	97.47	100.00	96.55	97.44	96.91	95.15	97.59	94.44	90.74	98.36	98.80	93.96	-4.83	0.060518	0.663989
N	cassette	FNTA	chr8	+	chr8:42932508-42939852	chr8:42932508-42938260;chr8:42938324-42939852		chr8:42938261-42938323			100.00	100.00	100.00	NA	100.00	NA	98.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	cassette	ZRSR2	chrX	+	chrX:15822321-15827322	chrX:15822321-15826355;chrX:15826395-15827322		chrX:15826356-15826394			90.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	NA	94.12	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	78.57	100.00	100.00	NA	100.00	100.00	100.00	94.12	-5.88	0.133432	0.709176
K	intron_retention		chr2	-	chr2:38975796-38976039				chr2:38975795-38975796;chr2:38976039-38976040		50.00	26.79	45.71	35.71	48.57	NA	53.85	25.00	21.43	33.33	71.43	NA	50.00	24.00	42.11	27.78	60.00	NA	31.58	50.00	52.38	51.61	53.10	45.45	51.85	34.57	51.11	65.00	61.72	52.38	19.67	32.76	25.53	40.43	48.48	33.33	40.79	29.79	-11.00	0.915555	1.000000
N	alternative_donor	SLC12A8	chr3	-	chr3:49147796-49147880;chr3:49147796-49147948	chr3:49147796-49147876		chr3:49147877-49147880;chr3:49147881-49147948	chr3:49147880-49147881;chr3:49147948-49147949		91.30	100.00	92.59	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	95.00	90.48	100.00	NA	100.00	92.31	100.00	100.00	96.15	81.82	88.24	100.00	91.30	90.00	100.00	100.00	80.95	92.86	100.00	95.65	-4.35	0.139201	0.551111
K	alternative_donor	USP5	chr12	+	chr12:6972473-6972993	chr12:6972542-6972993		chr12:6972473-6972541	chr12:6972472-6972473		NA	0.00	0.00	NA	0.00	NA	3.57	0.00	5.88	4.76	4.17	0.00	5.17	0.00	8.57	11.54	4.65	0.00	0.00	0.00	5.00	0.00	0.00	NA	0.00	0.00	8.00	NA	4.76	NA	NA	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.183516	0.563271
K	alternative_acceptor	C17orf49	chr17	+	chr17:6920005-6920268	chr17:6920005-6920228		chr17:6920229-6920268	chr17:6920268-6920269		96.77	100.00	95.45	100.00	95.79	97.06	100.00	94.29	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	90.08	100.00	100.00	100.00	100.00	100.00	100.00	94.34	94.83	100.00	96.23	100.00	100.00	95.37	92.56	100.00	96.30	96.77	100.00	97.00	-3.00	0.998790	1.000000
N	jcn_only_AA	MED8	chr1	-	chr1:43853301-43853980;chr1:43853319-43853980	chr1:43853279-43853980		chr1:43853279-43853300;chr1:43853301-43853318	chr1:43853278-43853279;chr1:43853300-43853301		3.23	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	2.22	0.00	0.00	NA	NA	0.00	0.00	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.174960	0.663989
K	coord_cassette	BAX	chr19	+	chr19:49458857-49459454	chr19:49458857-49458943;chr19:49458971-49458971;chr19:49459091-49459454		chr19:49458944-49458970;chr19:49458972-49459090			96.74	97.50	99.31	97.14	97.14	100.00	98.36	98.91	96.95	95.95	95.96	94.74	98.74	99.03	99.24	99.14	98.32	94.87	97.42	98.00	98.34	96.39	97.20	97.83	100.00	98.26	99.34	97.92	98.71	96.97	94.66	97.11	97.73	95.58	98.61	95.83	98.05	98.13	0.08	0.404527	0.661206
K	jcn_only_AA	HCST,HMG20B	chr19	+	chr19:36394806-36395024	chr19:36394806-36395021		chr19:36395022-36395024	chr19:36395024-36395025		68.16	70.20	80.21	68.75	70.01	67.47	71.94	68.46	66.67	69.00	71.63	73.94	71.07	65.75	73.68	69.52	70.69	65.94	72.62	73.81	74.86	70.08	69.92	74.85	72.45	69.81	70.15	73.23	70.13	70.75	71.89	69.77	71.69	68.42	68.89	69.61	71.81	69.13	-2.68	0.152270	0.663989
N	jcn_only_AD	TMEM176A	chr7	+	chr7:150501808-150501914;chr7:150501561-150501914	chr7:150501574-150501914		chr7:150501561-150501573;chr7:150501574-150501807	chr7:150501560-150501561;chr7:150501573-150501574		12.30	22.22	9.71	0.00	4.17	4.35	9.55	7.34	9.96	18.57	7.27	9.84	7.25	8.46	11.52	10.17	8.40	8.20	7.92	10.10	8.53	9.91	8.33	8.46	7.78	9.18	7.53	6.75	6.25	7.86	8.14	7.88	7.08	7.79	6.79	6.22	7.85	8.82	0.97	0.692123	0.844967
N	cassette	TCEB1	chr8	-	chr8:74868290-74884311;chr8:74872054-74884311	chr8:74868290-74876721,chr8:74872054-74876721;chr8:74876861-74884311		chr8:74876722-74876860			27.59	25.00	23.26	20.51	21.15	20.83	20.37	21.21	18.87	19.42	15.00	14.89	15.09	15.15	16.98	21.14	10.09	11.11	8.11	22.86	12.20	20.37	16.00	17.07	NA	21.74	20.59	27.66	18.52	24.14	19.44	24.49	27.08	27.45	27.27	36.96	20.37	21.48	1.11	0.586355	0.842370
N	jcn_only_AA	ARFGAP1	chr20	+	chr20:57288600-57289016	chr20:57288600-57288972		chr20:57288973-57289016	chr20:57289016-57289017		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	90.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AD	MYO18A	chr17	-	chr17:27401933-27406744;chr17:27401933-27404045	chr17:27401933-27409333		chr17:27404046-27406744;chr17:27406745-27409333	chr17:27406744-27406745;chr17:27409333-27409334		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	0.00	0.363217	0.657607
K	alternative_donor	C19orf43	chr19	-	chr19:12842236-12845149	chr19:12842236-12845126		chr19:12845127-12845149	chr19:12845149-12845150		92.42	100.00	91.57	100.00	94.12	100.00	92.59	95.08	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.42	96.43	100.00	100.00	94.29	100.00	94.44	100.00	93.33	92.86	100.00	100.00	92.73	95.59	100.00	92.68	90.00	100.00	97.22	95.75	-1.47	0.760464	0.902788
N	cassette	EIF3M	chr11	+	chr11:32605476-32615411	chr11:32605476-32611092;chr11:32611188-32615411		chr11:32611093-32611187			100.00	92.86	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.94	100.00	100.00	93.33	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	0.00	0.174997	0.709176
N	cassette	MRPL18	chr6	+	chr6:160212159-160219083	chr6:160212159-160218318;chr6:160218551-160219083		chr6:160218319-160218550			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	NCAPH2,PPIL2	chr22	+	chr22:22049786-22051091;chr22:22049786-22051035;chr22:22049786-22051173	chr22:22049786-22050319		chr22:22050320-22051035;chr22:22051036-22051091;chr22:22051092-22051173	chr22:22051035-22051036;chr22:22051091-22051092;chr22:22051173-22051174		33.33	18.75	35.29	NA	21.43	NA	19.23	13.33	13.33	21.05	22.58	NA	26.67	30.00	31.25	21.05	16.28	NA	18.18	25.00	18.18	NA	18.18	NA	NA	18.18	33.33	25.00	16.67	9.09	NA	28.57	NA	30.77	26.32	27.27	18.99	25.00	6.01	0.466357	0.769352
K	intron_retention		chr15	-	chr15:51017521-51018517				chr15:51017520-51017521;chr15:51018517-51018518		6.15	5.13	10.65	11.76	9.68	4.00	0.00	1.69	0.91	0.00	0.00	4.88	0.00	1.30	2.39	1.16	5.00	3.45	5.00	5.74	2.70	13.89	5.26	21.21	0.00	5.10	8.90	14.29	12.00	11.49	3.88	8.40	4.17	13.73	13.73	16.38	2.08	4.49	2.41	0.704415	1.000000
K	intron_retention	CCDC107	chr9	+	chr9:35660645-35660762				chr9:35660644-35660645;chr9:35660762-35660763		100.00	97.01	100.00	100.00	94.74	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	91.55	94.12	95.83	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.75	100.00	100.00	NA	97.01	100.00	2.99	0.416568	1.000000
N	cassette	NCOR2	chr12	-	chr12:124838743-124839382;chr12:124838743-124839977	chr12:124838743-124839023;chr12:124839129-124839977,chr12:124839129-124839382		chr12:124839024-124839128			100.00	100.00	68.75	NA	NA	NA	89.58	100.00	100.00	87.01	88.64	89.74	94.74	91.67	100.00	94.52	92.37	97.30	NA	NA	NA	NA	80.77	81.48	100.00	83.33	75.00	70.00	100.00	NA	NA	NA	NA	88.89	85.19	81.25	97.37	95.84	-1.53	0.641392	0.868138
K	intron_retention		chr7	+	chr7:4825084-4825152				chr7:4825083-4825084;chr7:4825152-4825153		6.67	7.14	8.11	6.67	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	12.12	0.00	11.11	7.84	12.00	10.00	0.00	3.45	3.23	0.00	3.85	24.39	18.18	23.08	2.78	12.20	7.55	7.14	3.33	-3.80	0.992579	1.000000
K	alternative_acceptor	SIK3	chr11	-	chr11:116717174-116718191	chr11:116717270-116718191		chr11:116717174-116717269	chr11:116717173-116717174		100.00	100.00	98.15	100.00	94.74	92.21	NA	100.00	100.00	100.00	NA	96.43	NA	100.00	95.45	100.00	100.00	100.00	92.86	100.00	97.14	100.00	94.12	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	98.44	100.00	92.86	94.44	96.92	100.00	100.00	0.00	0.480953	0.779698
N	jcn_only_AA	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500583;chr10:35495980-35500588;chr10:35495980-35500181	chr10:35495980-35498239		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		1.88	0.00	2.68	0.00	0.00	0.00	0.00	1.71	5.95	5.08	3.33	3.60	0.00	4.12	3.80	0.00	0.00	5.36	0.00	2.44	2.78	0.00	2.13	0.00	0.00	4.52	3.82	0.00	3.12	0.00	2.45	1.30	0.00	1.77	0.00	0.00	0.00	2.45	2.45	0.001961	0.397188
N	alternative_acceptor	WDR6	chr3	+	chr3:49044965-49051642;chr3:49044965-49048853	chr3:49044965-49049067		chr3:49048854-49049067;chr3:49049068-49051642	chr3:49049067-49049068;chr3:49051642-49051643		92.00	84.00	93.88	NA	NA	NA	97.62	94.12	93.94	94.12	90.00	NA	92.21	92.86	88.46	98.08	98.21	NA	NA	57.14	NA	94.74	95.24	90.91	92.31	90.00	74.36	95.24	94.12	NA	90.00	53.12	NA	92.68	95.83	86.21	92.26	91.00	-1.26	0.421445	0.733210
N	jcn_only_AA	SLC26A6	chr3	-	chr3:48665472-48665866;chr3:48665738-48665866	chr3:48665621-48665866		chr3:48665472-48665620;chr3:48665621-48665737	chr3:48665471-48665472;chr3:48665620-48665621		0.00	13.51	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	RHOT2	chr16	+	chr16:720774-720888;chr16:720774-720924	chr16:720774-720891		chr16:720889-720891;chr16:720892-720924	chr16:720891-720892;chr16:720924-720925		88.89	NA	90.00	NA	80.00	NA	96.55	100.00	91.30	86.36	93.10	80.00	92.31	95.45	92.31	95.24	96.67	100.00	85.71	100.00	100.00	83.33	97.22	94.12	100.00	88.00	83.33	80.00	89.66	90.91	90.00	89.29	NA	85.71	84.00	90.00	94.43	92.72	-1.71	0.983762	0.995778
N	jcn_only_AD	UBL5	chr19	+	chr19:9938644-9939002;chr19:9938661-9939002	chr19:9938741-9939002		chr19:9938644-9938660;chr19:9938661-9938740	chr19:9938643-9938644;chr19:9938660-9938661		7.97	6.74	7.81	10.88	8.70	6.48	9.26	9.12	12.15	10.32	7.67	8.38	8.17	9.32	11.74	10.08	9.09	8.56	8.81	7.06	11.51	7.57	6.11	7.13	8.30	9.12	10.98	9.25	7.93	7.93	8.25	8.10	8.21	9.00	9.03	8.15	8.26	8.68	0.43	0.661861	0.825213
N	alternative_acceptor	HEXB	chr5	+	chr5:74014189-74014584;chr5:74014189-74014733	chr5:74014189-74014621		chr5:74014585-74014621;chr5:74014622-74014733	chr5:74014621-74014622;chr5:74014733-74014734		95.95	100.00	95.71	95.65	96.45	97.61	99.75	95.94	100.00	97.18	100.00	100.00	97.24	100.00	97.33	96.14	97.07	97.44	93.55	91.86	94.57	96.36	95.96	100.00	100.00	97.39	96.15	95.87	100.00	100.00	93.10	93.22	93.26	95.19	95.77	97.18	98.50	95.94	-2.55	0.389223	0.709013
N	jcn_only_AD	NOSIP,ZNF91	chr19	-	chr19:50063950-50093412;chr19:50063950-50083771;chr19:50063950-50082397;chr19:50063950-50077847	chr19:50063950-50067411		chr19:50067412-50077847;chr19:50077848-50082397;chr19:50082398-50083771;chr19:50083772-50093412	chr19:50077847-50077848;chr19:50082397-50082398;chr19:50083771-50083772;chr19:50093412-50093413		0.00	0.00	0.00	0.00	0.00	13.33	3.57	0.00	0.00	0.00	0.00	0.00	0.00	3.64	6.06	0.00	2.86	0.00	2.50	0.00	6.67	0.00	2.44	7.69	0.00	2.90	2.63	0.00	0.00	4.17	3.23	3.57	0.00	0.00	0.00	4.55	0.00	1.45	1.45	0.545014	0.764794
N	alternative_donor	MAN2B2	chr4	+	chr4:6619220-6621653;chr4:6619335-6621653	chr4:6620865-6621653		chr4:6619220-6619334;chr4:6619335-6620864	chr4:6619219-6619220;chr4:6619334-6619335		6.12	7.14	12.28	NA	NA	NA	3.92	2.38	2.63	2.70	3.92	2.33	3.57	2.78	2.86	5.56	3.77	3.03	NA	8.82	NA	0.00	9.38	4.17	NA	6.67	6.90	7.69	4.55	7.69	2.70	5.66	10.00	8.70	9.68	6.52	5.53	4.45	-1.08	0.528933	0.776287
K	intron_retention	DNAJC7	chr17	-	chr17:40128789-40129278				chr17:40128788-40128789;chr17:40129278-40129279		4.73	1.08	4.88	1.77	1.15	1.30	0.00	0.94	1.57	0.00	0.00	7.50	0.00	0.83	0.00	1.56	0.00	5.26	1.04	1.46	1.95	0.00	1.97	6.12	0.00	1.92	3.60	1.30	2.13	2.70	2.96	5.07	1.28	2.06	1.50	5.41	0.52	1.69	1.17	0.121046	1.000000
N	cassette	CD47	chr3	-	chr3:107766140-107776323;chr3:107769450-107776323	chr3:107766140-107770785,chr3:107769450-107770785;chr3:107770818-107776323		chr3:107770786-107770817			92.80	93.14	93.80	99.15	99.10	97.46	93.65	92.18	87.61	94.06	95.78	95.39	92.19	92.59	90.91	95.28	93.20	94.12	92.19	90.68	93.24	97.30	95.74	95.33	96.13	87.96	90.36	96.80	96.96	95.50	88.72	90.37	92.22	95.83	97.66	92.31	92.68	91.43	-1.25	0.045720	0.538787
K	alternative_acceptor	ERLIN2,NDUFB9	chr8	+	chr8:125551529-125555360	chr8:125551529-125555327		chr8:125555328-125555360	chr8:125555360-125555361		97.67	92.81	98.44	93.06	94.33	90.38	95.98	100.00	98.11	90.67	90.91	88.33	100.00	100.00	100.00	94.04	90.86	91.67	91.18	84.38	90.15	89.55	89.36	100.00	100.00	100.00	96.72	96.67	88.37	89.29	88.24	92.59	89.78	95.18	100.00	95.31	94.40	98.84	4.44	0.979235	0.994572
K	cassette	MFSD12	chr19	-	chr19:3546167-3547269	chr19:3546167-3546252;chr19:3546424-3547269		chr19:3546253-3546423			92.31	89.66	93.75	85.88	80.86	90.10	98.27	96.96	98.03	97.98	95.56	97.21	98.76	97.50	97.14	98.27	95.83	98.15	85.88	95.24	95.93	89.83	83.48	89.06	90.15	95.22	90.54	93.38	86.27	92.66	96.10	95.68	93.12	88.76	90.15	93.20	91.64	95.67	4.03	0.233910	0.709176
N	jcn_only_AD	TRPM2	chr21	+	chr21:45838921-45843527;chr21:45838914-45843527;chr21:45842303-45843527	chr21:45838439-45843527					100.00	100.00	100.00	NA	100.00	NA	93.22	100.00	100.00	NA	100.00	NA	98.61	97.44	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.78	100.00	96.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	98.55	93.33	95.74	100.00	98.58	100.00	1.42	0.159993	0.657607
N	cassette	NAGK	chr2	+	chr2:71300725-71303733	chr2:71300725-71302691;chr2:71302773-71303733		chr2:71302692-71302772			85.11	87.40	81.82	96.15	94.57	100.00	100.00	97.91	98.25	94.44	97.53	100.00	100.00	97.10	100.00	96.97	100.00	100.00	90.65	90.32	94.12	100.00	95.96	95.12	100.00	94.22	100.00	93.62	100.00	96.84	75.00	100.00	82.61	88.24	94.59	89.61	95.33	92.27	-3.06	0.476393	0.770451
K	alternative_acceptor	ABR	chr17	-	chr17:909361-910404	chr17:909410-910404		chr17:909361-909409	chr17:909360-909361		86.25	88.89	86.73	NA	93.33	69.23	91.03	93.06	87.72	92.39	87.16	93.52	83.78	87.88	83.33	87.50	87.90	88.35	NA	90.32	80.00	90.00	85.71	84.04	100.00	90.41	87.04	84.85	85.11	90.32	91.11	88.89	NA	92.31	89.06	87.90	89.96	90.36	0.40	0.775366	0.916888
N	alternative_acceptor	HNRNPUL1	chr19	+	chr19:41810167-41811736;chr19:41810167-41811580;chr19:41810167-41811532	chr19:41810167-41811550		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		10.00	7.69	5.88	NA	12.50	NA	9.84	14.52	8.62	8.62	10.11	12.50	7.78	11.11	11.11	6.52	9.26	7.41	0.00	5.71	11.11	0.00	9.76	6.67	NA	7.89	6.67	5.56	9.30	7.14	11.76	7.41	0.00	17.39	11.43	7.14	7.69	10.55	2.86	0.077564	0.585944
K	cassette	TMEM183A	chr1	+	chr1:202985269-202987608	chr1:202985269-202986883;chr1:202987048-202987608		chr1:202986884-202987047			4.26	0.00	7.58	NA	13.33	NA	3.41	2.78	8.00	1.89	2.78	0.00	2.99	9.38	7.89	2.17	2.67	0.00	0.00	2.86	8.70	4.35	5.88	10.00	0.00	6.90	6.82	7.69	7.50	11.76	13.04	5.56	3.70	4.65	7.55	4.08	1.50	5.58	4.08	0.032974	0.454045
K	coord_cassette	STYXL1	chr7	-	chr7:75634723-75657959	chr7:75634723-75643059;chr7:75643206-75651168;chr7:75651311-75657959		chr7:75643060-75643205;chr7:75651169-75651310			100.00	100.00	86.67	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	93.94	100.00	100.00	95.45	94.44	92.86	100.00	93.33	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AD		chr19	-	chr19:51013706-51014331;chr19:51013706-51014382	chr19:51013706-51014373		chr19:51014332-51014373;chr19:51014374-51014382	chr19:51014373-51014374;chr19:51014382-51014383		100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	93.88	100.00	98.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.861779	0.930693
K	intron_retention	VAV1	chr19	+	chr19:6828183-6828429				chr19:6828182-6828183;chr19:6828429-6828430		2.06	2.41	3.30	3.23	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.79	5.26	1.19	1.59	2.82	2.54	0.95	0.00	1.16	2.65	0.00	1.30	1.89	0.00	2.48	5.88	0.95	1.97	2.15	1.21	0.58	-0.63	0.657273	1.000000
K	intron_retention		chr5	-	chr5:176918148-176918807				chr5:176918147-176918148;chr5:176918807-176918808		8.65	15.15	10.11	NA	4.55	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.41	0.00	0.00	1.41	2.53	0.00	7.35	0.00	0.00	7.14	4.76	8.33	5.00	NA	1.28	6.58	0.00	13.64	8.57	3.70	0.00	2.22	2.22	0.945357	1.000000
K	jcn_only_AA	DEDD	chr1	-	chr1:161092965-161093628	chr1:161093012-161093628		chr1:161092965-161093011	chr1:161092964-161092965		100.00	100.00	96.36	100.00	100.00	NA	100.00	100.00	100.00	95.92	100.00	100.00	95.24	100.00	98.28	100.00	95.00	100.00	NA	95.24	100.00	100.00	95.56	100.00	100.00	98.36	94.92	100.00	100.00	100.00	93.94	100.00	NA	100.00	100.00	100.00	100.00	99.18	-0.82	0.600653	0.814519
K	intron_retention	PER1	chr17	-	chr17:8045274-8045586				chr17:8045273-8045274;chr17:8045586-8045587		8.11	10.00	10.53	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	4.35	11.54	9.52	NA	0.00	NA	17.65	9.09	2.78	NA	NA	NA	7.14	13.89	11.90	8.33	6.25	0.00	7.17	7.62	0.45	0.403577	1.000000
N	alternative_acceptor	MOB2	chr11	-	chr11:1492646-1501622	chr11:1492650-1501622		chr11:1492646-1492649	chr11:1492645-1492646		100.00	80.77	86.96	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	NA	93.75	94.29	83.33	100.00	NA	NA	NA	100.00	87.50	100.00	NA	100.00	100.00	100.00	92.31	95.00	100.00	90.48	84.62	100.00	100.00	97.30	92.31	100.00	7.69	0.185605	0.660713
N	alternative_acceptor	RTN2	chr19	-	chr19:45989048-45989312	chr19:45989103-45989312		chr19:45989048-45989102	chr19:45989047-45989048		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	1.61	0.00	-1.61	0.084998	0.585944
K	cassette	PLEC	chr8	-	chr8:145012409-145012798	chr8:145012409-145012568;chr8:145012584-145012798		chr8:145012569-145012583			0.00	0.00	0.00	NA	NA	NA	3.95	5.41	0.00	1.82	1.89	8.33	1.04	0.00	6.67	2.82	1.23	4.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.951180	0.987421
K	cassette	C2,XXbac-BPG116M5.17	chr6	+	chr6:31895942-31901386	chr6:31895942-31896508;chr6:31896695-31901386		chr6:31896509-31896694			80.28	80.85	80.23	NA	66.67	NA	92.78	86.54	86.15	93.06	93.26	90.72	92.86	89.87	85.34	88.46	92.54	96.23	NA	80.77	88.24	90.00	82.46	85.94	100.00	89.68	81.82	93.48	90.16	87.93	69.44	81.33	NA	89.13	82.69	87.04	92.82	83.66	-9.16	0.128033	0.709176
K	cassette	LILRB2	chr19	-	chr19:54780156-54780660	chr19:54780156-54780234;chr19:54780311-54780660		chr19:54780235-54780310			94.94	95.04	91.30	90.00	89.62	93.02	92.39	91.39	92.13	90.78	92.66	94.16	93.64	88.33	82.88	87.94	89.34	93.56	92.39	93.66	91.23	89.58	84.55	91.74	92.31	93.71	90.41	88.89	84.62	91.07	93.36	90.15	88.54	88.89	89.81	92.31	92.39	93.51	1.12	0.893491	0.967641
K	jcn_only_AA	ARL6IP4	chr12	+	chr12:123465847-123466117;chr12:123465847-123466141	chr12:123465847-123466202		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		8.33	0.00	8.33	0.00	4.72	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	2.56	1.90	0.00	2.15	11.11	4.00	0.00	3.33	7.69	5.84	0.00	9.09	0.00	3.82	0.00	0.00	9.09	3.95	2.44	4.44	6.25	1.07	3.33	2.26	0.330779	0.663989
N	alternative_acceptor	GGCX	chr2	-	chr2:85786199-85787937	chr2:85786939-85787937		chr2:85786199-85786938	chr2:85786198-85786199		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	23.08	5.56	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.315133	0.709013
N	alternative_acceptor	GPS1	chr17	+	chr17:80012852-80013040;chr17:80012852-80012967	chr17:80012852-80013037		chr17:80012968-80013037;chr17:80013038-80013040	chr17:80013037-80013038;chr17:80013040-80013041		68.75	57.14	66.67	NA	76.47	NA	71.11	90.00	64.29	78.95	81.25	58.33	68.63	90.00	68.97	77.78	69.44	80.95	75.00	61.54	73.33	NA	73.91	72.73	82.35	NA	70.83	80.00	69.23	80.00	NA	76.47	60.00	76.47	60.00	69.57	69.87	79.38	9.50	0.352473	0.709013
N	coord_cassette	UPP1	chr7	+	chr7:48134425-48146469	chr7:48134425-48139266;chr7:48139385-48141420;chr7:48141580-48146469		chr7:48139267-48139384;chr7:48141421-48141579			16.45	7.14	15.48	16.36	14.29	10.27	25.00	30.43	35.29	57.63	36.36	56.38	15.38	41.67	33.33	38.57	27.03	54.55	2.94	20.18	13.33	30.86	25.93	43.90	0.00	25.37	21.49	34.09	35.56	44.68	9.84	10.24	4.62	18.28	17.65	26.44	5.88	22.77	16.89	0.032892	0.643829
K	cassette	NAPRT	chr8	-	chr8:144659013-144659438	chr8:144659013-144659231;chr8:144659348-144659438		chr8:144659232-144659347			96.97	92.59	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.00	NA	95.65	NA	85.71	92.86	100.00	NA	100.00	100.00	96.15	84.00	92.50	NA	100.00	100.00	96.30	96.97	0.67	0.475536	0.770451
K	intron_retention		chr8	-	chr8:67955553-67958046				chr8:67955552-67955553;chr8:67958046-67958047		11.11	3.68	12.66	3.17	2.50	2.94	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	4.20	7.32	4.21	8.11	4.35	12.90	11.54	5.56	7.69	4.88	2.02	3.57	7.55	6.17	3.20	7.27	4.55	11.76	3.44	6.44	3.00	0.909283	1.000000
N	jcn_only_AA	FAM49A	chr2	-	chr2:16742542-16742723	chr2:16742546-16742723		chr2:16742542-16742545	chr2:16742541-16742542		100.00	100.00	96.43	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	99.78	100.00	100.00	100.00	99.28	100.00	99.78	100.00	100.00	100.00	100.00	100.00	98.65	NA	99.23	100.00	100.00	100.00	99.43	94.87	100.00	100.00	100.00	100.00	99.55	100.00	100.00	0.00	0.293889	0.663989
K	intron_retention		chr10	+	chr10:104160249-104160411				chr10:104160248-104160249;chr10:104160411-104160412		8.23	8.51	8.23	11.25	10.16	8.99	2.82	1.50	0.95	1.37	3.16	2.08	0.00	1.33	2.50	1.61	3.73	2.21	13.33	7.32	5.12	12.29	12.10	12.91	14.58	3.93	6.23	8.73	12.64	9.38	4.89	6.91	11.94	11.07	9.87	8.90	10.22	4.41	-5.81	0.488034	1.000000
K	intron_retention	SEPT9	chr17	+	chr17:75398578-75483563				chr17:75398577-75398578;chr17:75483563-75483564		100.00	100.00	100.00	NA	100.00	NA	96.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.629122	1.000000
K	intron_retention	SRSF10	chr1	-	chr1:24294214-24298062				chr1:24294213-24294214;chr1:24298062-24298063		30.00	12.50	24.00	7.69	10.00	9.68	6.90	11.76	7.41	1.79	4.76	5.26	5.88	6.67	6.06	3.57	4.17	7.14	11.11	15.38	14.29	11.11	14.29	11.63	NA	27.78	16.00	5.26	6.67	5.00	18.18	19.23	12.50	9.38	23.08	8.57	11.11	16.78	5.67	0.487987	1.000000
N	jcn_only_AD	PHC2	chr1	-	chr1:33790621-33791395;chr1:33790621-33792948	chr1:33790621-33794470					94.71	100.00	90.98	100.00	95.51	NA	100.00	93.83	94.90	93.98	96.75	88.00	97.37	95.88	96.97	94.20	94.83	100.00	100.00	95.60	94.12	100.00	94.71	91.30	NA	96.05	92.17	100.00	94.74	100.00	97.01	97.06	100.00	100.00	92.04	97.78	100.00	95.74	-4.26	0.000373	0.060704
K	intron_retention	GADD45A	chr1	+	chr1:68151222-68151707				chr1:68151221-68151222;chr1:68151707-68151708		3.23	0.00	3.97	NA	NA	NA	0.00	0.00	0.33	0.00	NA	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	0.00	1.64	2.50	6.25	2.33	0.00	0.00	1.01	NA	NA	0.00	3.33	2.79	0.00	0.00	5.00	4.55	0.00	0.00	0.00	0.594508	1.000000
K	alternative_first_exon	CFL1	chr11	-	chr11:65623714-65624036,chr11:65623714-65624563,chr11:65623714-65625167,chr11:65623714-65627458,chr11:65623714-65627783,chr11:65623714-65628301,chr11:65623714-65628471;chr11:65623714-65625567;chr11:65623714-65626701;chr11:65623714-65625102;chr11:65623714-65628727	chr11:65623714-65624401,chr11:65623714-65624355	chr11:65625568-65626101;chr11:65626702-65626886;chr11:65625103-65625339;chr11:65628728-65628892	chr11:65624402-65624435			6.86	6.43	7.84	3.67	7.46	2.17	3.62	2.35	2.47	2.18	1.96	2.01	0.87	1.42	2.39	0.67	0.91	1.38	5.04	7.94	10.31	2.90	3.54	3.66	3.85	5.30	5.92	2.99	2.27	2.65	10.90	14.24	10.24	5.80	8.38	5.51	4.45	6.08	1.63	0.693677	0.782568
N	cassette	LILRB1	chr19	+	chr19:55145473-55146554;chr19:55145473-55146709	chr19:55145473-55146091;chr19:55146215-55146554,chr19:55146215-55146709		chr19:55146092-55146214			95.97	84.62	91.09	NA	NA	NA	95.24	98.99	100.00	100.00	100.00	94.87	97.30	98.14	100.00	100.00	97.73	100.00	86.67	95.66	92.00	89.29	78.95	97.44	NA	98.50	95.65	98.28	100.00	100.00	95.24	95.92	100.00	92.86	90.00	94.12	95.24	97.06	1.82	0.229329	0.709176
K	intron_retention	IDH3B	chr20	-	chr20:2641237-2641342				chr20:2641236-2641237;chr20:2641342-2641343		7.41	8.64	15.00	5.26	6.78	NA	1.72	0.00	0.00	0.00	0.00	0.00	1.32	0.00	5.88	0.00	0.82	0.00	6.38	11.54	4.76	12.50	11.69	16.13	15.62	4.76	12.20	14.29	10.84	8.11	15.79	14.58	9.76	12.07	13.33	14.75	7.51	6.08	-1.42	0.784820	1.000000
K	intron_retention	GDF15	chr19	+	chr19:18497277-18499095				chr19:18497276-18497277;chr19:18499095-18499096		4.35	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	12.50	9.30	0.00	2.94	6.45	NA	13.33	0.00	0.00	0.00	0.00	NA	5.36	7.58	19.18	6.90	10.00	NA	6.25	2.17	-4.08	0.710354	1.000000
N	cassette	RTF1	chr15	+	chr15:41730630-41749869	chr15:41730630-41745098;chr15:41745247-41749869		chr15:41745099-41745246			100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.62	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	85.71	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	SBF1	chr22	-	chr22:50893572-50893652				chr22:50893571-50893572;chr22:50893652-50893653		6.00	0.00	3.23	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	NA	3.70	0.00	4.00	6.45	3.33	0.00	0.00	2.50	4.17	0.00	0.00	12.90	9.80	NA	4.00	6.25	2.08	0.00	1.85	1.85	0.423853	1.000000
K	intron_retention	RPS6KB2	chr11	+	chr11:67201529-67201668				chr11:67201528-67201529;chr11:67201668-67201669		1.75	0.00	4.17	3.23	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	2.53	0.00	2.78	0.00	3.23	0.00	0.00	8.00	2.99	5.56	2.27	3.08	0.96	0.00	5.45	3.92	0.00	0.00	0.00	0.899726	1.000000
N	alternative_acceptor	TLN1	chr9	-	chr9:35726532-35732071;chr9:35729397-35732071	chr9:35725725-35732071		chr9:35725725-35726531;chr9:35726532-35729396	chr9:35725724-35725725;chr9:35726531-35726532		93.75	95.12	90.77	NA	NA	NA	99.19	98.70	100.00	98.08	99.16	97.73	99.11	98.25	96.43	98.00	98.02	95.74	100.00	92.59	90.91	NA	95.24	94.74	94.29	95.74	92.00	91.67	94.74	NA	92.31	94.74	NA	90.91	88.46	88.00	99.11	94.75	-4.36	0.191479	0.660713
N	jcn_only_AD	NISCH	chr3	+	chr3:52514312-52518528;chr3:52514320-52518528;chr3:52515054-52518528	chr3:52515126-52518528					3.45	0.00	7.14	NA	NA	NA	0.00	0.00	0.00	NA	5.88	NA	1.27	0.00	0.00	0.00	1.12	NA	NA	4.35	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	1.73	1.73	0.250343	0.657607
K	intron_retention	ATXN2L	chr16	+	chr16:28847807-28848068				chr16:28847806-28847807;chr16:28848068-28848069		98.21	100.00	100.00	100.00	98.70	96.55	100.00	100.00	94.12	87.10	92.86	80.00	91.43	100.00	95.24	90.91	91.43	NA	100.00	94.29	98.11	100.00	97.83	92.31	100.00	100.00	97.30	100.00	100.00	93.94	100.00	97.80	94.44	97.73	100.00	96.83	100.00	100.00	0.00	0.811762	1.000000
K	cassette	SYPL1	chr7	-	chr7:105732386-105733394	chr7:105732386-105732993;chr7:105733116-105733394		chr7:105732994-105733115			0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	1.82	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	5.00	2.17	1.82	0.00	0.00	0.00	0.363217	0.709176
N	cassette	P2RX5-TAX1BP3,TAX1BP3	chr17	-	chr17:3563621-3567972;chr17:3567180-3567972	chr17:3563621-3567488,chr17:3567180-3567488;chr17:3567567-3567972		chr17:3567489-3567566			87.27	81.48	92.65	NA	91.18	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.26	100.00	95.24	100.00	98.59	100.00	100.00	90.48	91.43	89.29	92.86	94.44	71.43	91.18	100.00	100.00	100.00	100.00	100.00	90.00	90.48	100.00	90.32	87.50	93.87	95.59	1.72	0.401154	0.716458
N	cassette	LRSAM1	chr9	+	chr9:130258375-130263288	chr9:130258375-130259531;chr9:130259614-130263288		chr9:130259532-130259613			100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	87.50	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	PPP1R37	chr19	+	chr19:45648519-45648610	chr19:45648519-45648595		chr19:45648596-45648610	chr19:45648610-45648611		8.33	17.39	15.79	NA	4.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	6.67	0.00	2.63	NA	5.00	5.88	0.00	0.00	10.91	NA	0.00	8.33	4.00	8.33	5.56	7.69	17.65	12.12	6.90	4.00	2.86	5.00	2.50	7.11	4.61	0.648270	0.871140
K	jcn_only_AD	CHCHD5	chr2	+	chr2:113342064-113343550;chr2:113342496-113343550	chr2:113342227-113343550		chr2:113342064-113342226;chr2:113342227-113342495	chr2:113342063-113342064;chr2:113342226-113342227		83.33	95.65	84.62	100.00	92.59	100.00	100.00	NA	100.00	100.00	91.18	93.33	94.29	92.31	91.67	100.00	90.24	NA	88.89	83.33	93.55	NA	91.67	NA	100.00	NA	100.00	90.00	90.32	100.00	91.67	100.00	82.93	NA	100.00	100.00	94.97	87.50	-7.47	0.146567	0.657607
K	intron_retention	AP5Z1	chr7	+	chr7:4824680-4825045				chr7:4824679-4824680;chr7:4825045-4825046		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	6.67	5.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.716976	1.000000
K	jcn_only_AA	SIK3	chr11	-	chr11:116717174-116718191	chr11:116717270-116718191		chr11:116717174-116717269	chr11:116717173-116717174		100.00	100.00	98.80	100.00	96.00	94.39	NA	100.00	100.00	100.00	100.00	97.92	100.00	100.00	97.14	100.00	100.00	100.00	95.83	100.00	98.08	100.00	96.00	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	98.94	100.00	95.12	96.43	97.98	100.00	100.00	0.00	0.522442	0.763780
K	alternative_donor	POLE4	chr2	+	chr2:75186020-75186467	chr2:75186219-75186467		chr2:75186020-75186218	chr2:75186019-75186020		0.00	0.00	2.70	0.00	0.93	0.00	3.39	0.00	0.00	2.63	1.56	2.86	1.15	3.70	0.00	0.00	0.00	0.00	2.33	4.35	5.56	2.70	3.53	0.00	8.93	0.00	7.14	2.94	2.78	4.44	4.17	3.23	1.12	0.00	0.00	0.00	1.74	1.85	0.11	0.635876	0.835005
K	intron_retention	ACE	chr17	+	chr17:61574347-61574497				chr17:61574346-61574347;chr17:61574497-61574498		10.53	1.96	NA	4.00	3.92	0.00	2.41	1.41	NA	3.12	1.85	2.78	0.00	0.00	NA	4.76	0.00	NA	0.00	0.00	0.00	0.00	8.82	NA	0.00	7.69	NA	2.00	0.00	0.00	NA	NA	0.00	NA	8.33	0.00	0.00	1.41	1.41	0.545318	1.000000
N	cassette	HPS1	chr10	-	chr10:100190538-100193696;chr10:100190428-100193739;chr10:100190428-100193696	chr10:100190538-100190887,chr10:100190428-100190887;chr10:100191049-100193739,chr10:100191049-100193696		chr10:100190888-100191048			87.18	75.00	82.35	57.14	74.07	NA	97.14	94.59	94.12	80.36	92.59	90.91	88.29	92.00	92.06	82.46	84.25	84.78	64.29	90.24	76.00	73.91	77.78	85.42	100.00	100.00	77.78	77.42	85.29	72.41	89.29	84.21	85.71	73.97	77.63	80.21	87.00	91.12	4.12	0.264754	0.709176
K	alternative_acceptor	PPP6R2	chr22	+	chr22:50877192-50878129	chr22:50877192-50878126		chr22:50878127-50878129	chr22:50878129-50878130		3.77	4.17	3.23	4.00	1.96	3.33	3.33	4.88	0.00	0.00	2.94	6.67	5.26	3.70	4.26	8.33	3.23	0.00	3.77	2.13	2.90	3.12	2.70	3.85	7.14	0.00	2.82	3.33	2.44	11.11	3.70	2.53	3.64	12.50	3.12	2.70	3.97	3.70	-0.27	0.128455	0.621152
K	intron_retention		chr11	-	chr11:6636794-6637235				chr11:6636793-6636794;chr11:6637235-6637236		5.48	3.92	10.20	NA	5.00	NA	0.00	0.32	0.00	0.00	0.00	0.00	0.70	0.00	1.84	0.26	0.22	0.00	0.00	7.04	7.69	3.37	7.05	2.20	21.05	1.75	5.71	0.83	3.14	0.00	7.69	5.48	NA	4.17	5.00	2.15	0.70	3.62	2.92	0.596504	1.000000
N	alternative_donor	MTCH1	chr6	-	chr6:36938471-36939657;chr6:36938471-36940427	chr6:36938471-36940478		chr6:36939658-36940427;chr6:36940428-36940478	chr6:36940427-36940428;chr6:36940478-36940479		66.07	68.80	61.27	64.29	57.14	71.43	67.18	68.11	63.57	70.37	74.14	73.40	70.24	72.58	66.67	75.16	71.96	75.90	74.36	68.69	65.38	69.84	59.44	70.83	54.17	68.20	60.65	67.63	58.70	70.37	68.18	65.42	65.45	66.33	61.59	67.09	67.99	68.19	0.20	0.532726	0.776719
K	intron_retention	HDAC3	chr5	-	chr5:141007755-141008125				chr5:141007754-141007755;chr5:141008125-141008126		2.50	4.88	3.39	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	4.17	0.00	2.30	0.00	NA	0.00	6.98	0.00	1.49	0.00	12.50	7.14	0.00	0.00	4.69	3.45	0.00	1.25	1.25	0.806849	1.000000
K	intron_retention	ACSL5	chr10	+	chr10:114186118-114186545				chr10:114186117-114186118;chr10:114186545-114186546		4.94	0.00	4.20	1.49	0.00	0.50	2.56	0.00	5.13	1.06	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	2.60	3.08	3.85	4.62	4.59	0.00	3.57	2.41	1.52	0.00	0.86	3.16	5.68	0.00	3.82	3.70	2.70	0.00	2.88	2.88	0.368412	1.000000
K	cassette	ACIN1	chr14	-	chr14:23551046-23559730	chr14:23551046-23559190;chr14:23559311-23559730		chr14:23559191-23559310			76.19	100.00	72.22	NA	NA	NA	64.10	63.16	63.89	45.45	37.50	68.75	59.57	60.00	65.62	44.00	44.12	61.54	NA	62.96	NA	NA	63.16	62.50	71.43	84.00	84.62	NA	NA	NA	NA	84.21	NA	73.91	59.18	71.88	67.77	63.16	-4.61	0.678107	0.883836
K	intron_retention		chr11	+	chr11:47256964-47259387				chr11:47256963-47256964;chr11:47259387-47259388		43.33	34.62	41.30	15.79	20.51	18.18	7.14	5.88	6.52	8.70	18.75	12.50	10.00	8.57	12.50	6.25	13.89	13.33	30.77	27.27	31.43	27.27	26.67	31.58	61.11	30.00	46.81	0.00	25.00	16.00	28.00	27.14	30.00	36.00	36.11	30.95	30.38	27.63	-2.75	0.987351	1.000000
N	jcn_only_AD	SH3BP5-AS1	chr3	+	chr3:15302392-15305802;chr3:15301826-15305802;chr3:15302090-15305802	chr3:15302094-15305802		chr3:15301826-15302089;chr3:15302090-15302093;chr3:15302094-15302391	chr3:15301825-15301826;chr3:15302089-15302090;chr3:15302093-15302094		0.00	0.00	0.00	0.00	1.82	5.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.56	NA	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	ANKZF1	chr2	+	chr2:220100308-220100429				chr2:220100307-220100308;chr2:220100429-220100430		23.53	34.07	50.91	NA	44.74	NA	0.00	NA	0.00	NA	NA	NA	13.33	0.00	11.11	NA	NA	NA	38.33	25.00	36.00	NA	71.43	NA	34.48	22.22	38.03	NA	46.67	NA	25.00	41.51	29.23	NA	41.18	30.77	31.65	23.53	-8.12	0.862408	1.000000
N	jcn_only_AA		chr10	+	chr10:135123793-135125224	chr10:135123793-135125219		chr10:135125220-135125224	chr10:135125224-135125225		100.00	100.00	96.00	100.00	98.51	NA	100.00	100.00	100.00	100.00	96.77	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.33	96.08	NA	100.00	100.00	100.00	100.00	95.83	NA	100.00	100.00	91.89	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AA	PPP6R2,TOM1	chr22	+	chr22:35719171-35719511	chr22:35719171-35719488		chr22:35719489-35719511	chr22:35719511-35719512		97.35	100.00	94.46	92.98	97.75	100.00	94.52	95.33	94.48	92.20	91.67	95.77	95.18	97.26	96.03	98.57	100.00	90.70	100.00	96.14	95.80	96.64	96.98	95.52	92.16	95.80	97.09	93.69	97.59	96.27	100.00	96.62	96.55	96.45	95.07	98.98	95.87	96.70	0.83	0.700931	0.867936
N	jcn_only_AD		chr10	-	chr10:31134503-31137658	chr10:31134503-31137459		chr10:31137460-31137658	chr10:31137658-31137659		100.00	100.00	100.00	100.00	100.00	NA	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.11	100.00	96.92	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	ADA	chr20	-	chr20:43264930-43279463;chr20:43264930-43269710;chr20:43264930-43280215;chr20:43264930-43268764;chr20:43264930-43280542	chr20:43264930-43279758		chr20:43268765-43269710;chr20:43269711-43279463;chr20:43279464-43279758;chr20:43279759-43280215;chr20:43280216-43280542	chr20:43269710-43269711;chr20:43279463-43279464;chr20:43279758-43279759;chr20:43280215-43280216;chr20:43280542-43280543		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.35	0.00	0.29	NA	2.02	0.00	0.00	0.00	0.62	NA	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	MCOLN1	chr19	+	chr19:7593590-7593706	chr19:7593608-7593706		chr19:7593590-7593607	chr19:7593589-7593590		4.65	4.35	0.00	NA	11.11	NA	0.00	0.00	0.00	2.17	1.25	2.13	1.40	0.00	0.00	2.33	1.32	0.00	8.00	3.03	0.00	0.00	6.06	0.00	10.53	0.00	0.00	0.00	2.63	0.00	8.70	9.09	13.64	3.12	5.88	3.70	6.17	1.51	-4.66	0.203099	0.571503
K	intron_retention		chr19	+	chr19:10798385-10799225				chr19:10798384-10798385;chr19:10799225-10799226		15.38	14.29	11.76	9.09	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	20.00	0.00	14.29	8.33	7.14	0.00	9.09	6.25	0.00	3.70	0.00	NA	11.76	NA	6.67	0.00	5.00	0.00	12.23	12.23	0.753782	1.000000
K	jcn_only_AA	DESI1	chr22	-	chr22:41997195-41999262	chr22:41998788-41999262		chr22:41997195-41998787	chr22:41997194-41997195		5.56	0.00	5.26	0.00	3.51	1.06	6.06	2.86	3.47	7.97	5.81	8.00	0.00	3.33	1.92	3.83	5.15	9.00	0.00	1.25	0.00	2.90	4.65	5.19	0.00	0.00	0.00	1.98	0.00	0.63	0.00	0.00	0.00	2.80	0.00	4.44	0.00	2.05	2.05	0.409902	0.682643
K	intron_retention		chr19	-	chr19:39329656-39330735				chr19:39329655-39329656;chr19:39330735-39330736		0.00	1.16	3.42	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.57	1.59	1.69	2.56	3.57	0.00	0.00	1.06	0.00	2.22	2.04	3.51	7.22	6.00	2.33	3.75	0.97	0.58	0.00	-0.58	0.878953	1.000000
N	jcn_only_AA	E2F3,ORC3	chr6	+	chr6:88375552-88376735	chr6:88375552-88376728		chr6:88376729-88376735	chr6:88376735-88376736		16.67	0.00	13.04	NA	16.67	NA	NA	NA	20.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	18.75	19.05	15.79	NA	18.75	NA	NA	25.00	20.00	NA	0.00	NA	26.67	27.27	25.00	26.67	36.36	36.36	9.38	22.02	12.65	0.190979	0.663989
N	alternative_donor	RELB	chr19	+	chr19:45532241-45535791	chr19:45532251-45535791		chr19:45532241-45532250	chr19:45532240-45532241		100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.72	100.00	100.00	100.00	97.87	100.00	100.00	100.00	94.59	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	MTA2	chr11	-	chr11:62362107-62362452				chr11:62362106-62362107;chr11:62362452-62362453		1.25	0.00	3.33	2.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	2.38	0.00	4.88	2.04	2.08	0.00	1.22	0.00	2.47	5.61	1.82	1.37	1.01	1.54	0.00	0.62	0.62	0.633342	1.000000
N	jcn_only_AA	TMEM120A	chr7	-	chr7:75616702-75616855	chr7:75616747-75616855		chr7:75616702-75616746	chr7:75616701-75616702		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	92.86	96.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.643272	0.840592
K	intron_retention	DALRD3	chr3	-	chr3:49053141-49053251				chr3:49053140-49053141;chr3:49053251-49053252		88.37	96.35	83.87	94.51	95.54	92.31	96.43	83.33	94.74	100.00	90.32	NA	94.23	93.75	91.67	100.00	100.00	NA	91.16	95.65	87.06	100.00	94.92	100.00	95.60	84.85	85.07	92.68	95.65	79.17	87.80	91.04	94.92	94.74	90.00	97.06	95.26	88.09	-7.17	0.062275	1.000000
N	jcn_only_AD	UFD1L	chr22	-	chr22:19462624-19462992;chr22:19462624-19466620	chr22:19462624-19463018		chr22:19462993-19463018;chr22:19463019-19466620	chr22:19463018-19463019;chr22:19466620-19466621		8.11	41.67	20.00	6.67	7.41	NA	6.25	8.82	11.76	4.55	7.58	2.00	6.67	8.51	13.33	4.71	5.00	2.04	7.69	8.11	6.90	15.15	11.11	13.79	NA	13.73	17.07	5.41	7.89	8.70	18.52	26.47	18.18	11.90	12.50	12.07	7.69	8.66	0.97	0.499256	0.739810
K	intron_retention	AC002398.9,LIN37	chr19	+	chr19:36243901-36243987				chr19:36243900-36243901;chr19:36243987-36243988		4.17	0.00	21.05	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	3.57	16.67	8.33	7.14	0.00	8.33	8.33	0.00	5.88	0.00	11.54	9.09	0.00	0.00	10.53	8.00	0.00	4.36	4.36	0.249618	1.000000
N	cassette	ABTB1	chr3	+	chr3:127395425-127396010	chr3:127395425-127395809;chr3:127395927-127396010		chr3:127395810-127395926			96.97	100.00	93.10	100.00	94.00	NA	100.00	100.00	90.48	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	86.67	95.56	NA	100.00	98.08	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	99.04	-0.96	0.112841	0.709176
K	intron_retention	POMT1	chr9	+	chr9:134397612-134398318				chr9:134397611-134397612;chr9:134398318-134398319		4.55	5.41	6.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.973817	1.000000
K	alternative_donor	MYL5	chr4	+	chr4:672823-673702	chr4:672963-673702		chr4:672823-672962	chr4:672822-672823		3.70	3.57	3.77	3.45	0.00	1.54	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	1.52	5.26	1.75	0.00	4.55	0.00	3.03	18.75	6.00	10.00	13.33	0.00	7.41	8.33	2.13	9.09	9.09	5.56	2.58	6.33	3.75	0.165204	0.563271
N	alternative_acceptor		chr4	+	chr4:15716985-15717340	chr4:15716985-15717329		chr4:15717330-15717340	chr4:15717340-15717341		97.56	100.00	92.86	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.65	NA	100.00	100.00	NA	100.00	95.89	100.00	100.00	100.00	100.00	96.97	92.31	100.00	100.00	100.00	100.00	100.00	0.00	0.511686	0.800006
N	cassette	TAF15	chr17	+	chr17:34151203-34161569;chr17:34151104-34161569	chr17:34151104-34160910,chr17:34151203-34160910;chr17:34160946-34161569		chr17:34160911-34160945			98.08	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	95.24	100.00	99.05	100.00	100.00	100.00	100.00	96.88	97.18	100.00	NA	100.00	98.08	100.00	100.00	100.00	100.00	93.55	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083274;chr19:1083066-1083141	chr19:1083066-1083151		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		6.90	9.80	5.56	NA	5.13	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	15.38	4.00	0.00	3.64	0.00	0.00	14.29	5.26	NA	0.00	0.00	0.00	4.35	4.35	0.00	0.00	10.00	0.00	3.45	3.45	0.304654	0.709013
K	jcn_only_AA	ITFG1	chr16	-	chr16:47192846-47195660	chr16:47192902-47195660		chr16:47192846-47192901	chr16:47192845-47192846		98.08	96.91	99.24	100.00	96.20	96.88	99.00	100.00	98.70	100.00	97.67	98.46	97.98	97.50	100.00	96.77	95.83	98.18	93.24	97.70	95.93	96.97	100.00	98.04	100.00	97.56	95.42	96.00	94.29	96.30	95.83	98.50	94.90	96.97	96.10	98.90	97.44	97.63	0.19	0.530213	0.770087
K	intron_retention	TMEM259	chr19	-	chr19:1011663-1011739				chr19:1011662-1011663;chr19:1011739-1011740		14.75	17.07	11.58	26.67	15.00	NA	0.00	1.92	1.37	3.08	0.00	2.08	1.11	1.79	3.45	2.56	2.13	0.00	15.79	15.69	12.50	13.79	15.66	15.00	22.22	12.20	7.07	6.78	10.61	4.17	33.33	20.93	20.83	14.81	10.14	9.64	16.43	13.47	-2.96	0.999190	1.000000
N	jcn_only_AD	CLCN7	chr16	-	chr16:1515340-1521624;chr16:1515340-1524834	chr16:1515340-1521991		chr16:1521625-1521991;chr16:1521992-1524834	chr16:1521991-1521992;chr16:1524834-1524835		0.00	8.11	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	HMGB2	chr4	-	chr4:174254821-174255396;chr4:174254821-174255422	chr4:174254821-174255007		chr4:174255008-174255396;chr4:174255397-174255422	chr4:174255396-174255397;chr4:174255422-174255423		8.33	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	1.32	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	NA	NA	14.29	0.00	0.00	NA	5.26	NA	0.00	0.00	NA	NA	0.00	NA	0.66	0.00	-0.66	0.538857	0.778639
N	alternative_donor	OS9	chr12	+	chr12:58112160-58112775;chr12:58112166-58112775	chr12:58112205-58112775		chr12:58112160-58112165;chr12:58112166-58112204	chr12:58112159-58112160;chr12:58112165-58112166		68.44	73.78	72.58	75.00	72.08	76.07	82.55	80.70	84.44	83.84	83.22	80.69	70.21	71.38	74.63	65.02	70.81	70.82	77.42	79.11	68.52	75.17	80.86	81.95	79.31	81.73	81.90	79.89	82.99	82.71	77.86	78.51	77.73	82.21	77.63	79.03	77.58	78.48	0.91	0.918292	0.981916
N	cassette	ALKBH6	chr19	-	chr19:36501548-36503922;chr19:36501586-36502305	chr19:36501586-36501795,chr19:36501548-36501795;chr19:36501948-36502305,chr19:36501948-36503922		chr19:36501796-36501947			86.36	100.00	94.74	NA	85.71	NA	NA	NA	92.31	NA	92.86	NA	100.00	100.00	93.33	NA	85.71	NA	88.89	90.00	82.35	NA	92.86	NA	83.33	94.12	92.59	NA	91.67	NA	90.00	87.50	90.00	NA	NA	NA	90.00	90.00	0.00	0.933465	0.983459
N	jcn_only_AD	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610821-242611605;chr2:242610841-242611605	chr2:242610967-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		4.35	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	1.75	3.57	0.00	0.00	0.00	0.00	0.00	0.279425	0.657607
K	intron_retention	SIK3	chr11	-	chr11:116716346-116717098				chr11:116716345-116716346;chr11:116717098-116717099		12.77	0.00	11.76	0.00	0.00	0.84	NA	0.00	1.92	0.00	0.00	0.00	NA	0.00	1.59	0.00	0.00	0.00	0.00	6.90	1.47	8.57	5.26	14.00	0.00	6.76	8.16	0.00	0.00	0.00	4.88	10.11	2.50	6.38	3.12	5.95	0.00	5.82	5.82	0.133056	1.000000
N	cassette	GNB1	chr1	-	chr1:1756939-1822258;chr1:1756939-1811225	chr1:1756939-1770628;chr1:1770678-1811225,chr1:1770678-1822258		chr1:1770629-1770677			85.71	83.78	91.16	90.00	91.30	NA	91.41	91.12	91.86	93.40	93.55	94.82	93.55	90.46	93.68	94.33	93.56	93.98	100.00	94.83	94.59	94.92	94.74	94.95	NA	86.39	87.38	93.10	94.74	93.75	89.29	89.52	86.67	91.45	97.20	91.95	91.41	89.88	-1.53	0.660105	0.874845
K	cassette	SAP30BP	chr17	+	chr17:73663559-73667895	chr17:73663559-73664595;chr17:73664706-73667895		chr17:73664596-73664705			96.67	100.00	100.00	96.77	88.24	93.33	100.00	96.30	100.00	96.49	100.00	95.74	100.00	97.92	93.42	96.94	97.96	96.15	100.00	95.59	94.44	97.14	100.00	97.65	100.00	97.17	98.59	100.00	98.44	96.77	96.55	96.72	100.00	97.18	100.00	96.77	100.00	96.61	-3.39	0.000154	0.038633
N	jcn_only_AD	FAM193B	chr5	-	chr5:176951034-176951185;chr5:176951034-176951590	chr5:176951034-176951774		chr5:176951186-176951590;chr5:176951591-176951774	chr5:176951590-176951591;chr5:176951774-176951775		21.43	0.00	15.62	0.00	12.50	10.00	NA	NA	NA	NA	NA	NA	NA	NA	11.11	NA	NA	NA	12.50	13.33	0.00	0.00	9.09	NA	5.48	0.00	5.00	NA	0.00	0.00	11.11	10.00	10.34	0.00	0.00	0.00	7.91	12.22	4.31	0.438616	0.696909
K	intron_retention		chr19	-	chr19:15510222-15511105				chr19:15510221-15510222;chr19:15511105-15511106		9.80	4.40	1.75	4.17	1.79	7.69	0.00	0.00	0.00	8.70	3.70	27.27	3.45	0.00	3.57	13.33	6.90	28.57	0.00	4.17	3.12	8.00	3.08	15.56	2.82	12.20	6.06	15.15	4.00	15.09	4.05	3.23	1.47	11.63	4.65	25.81	2.15	4.11	1.96	0.685493	1.000000
N	alternative_donor	FMNL1	chr17	+	chr17:43309848-43310590;chr17:43309806-43310590	chr17:43309818-43310590		chr17:43309806-43309817;chr17:43309818-43309847	chr17:43309805-43309806;chr17:43309817-43309818		31.75	19.05	34.42	NA	16.67	NA	36.17	34.72	45.00	29.55	27.54	30.43	33.82	31.25	46.46	44.23	30.77	33.33	NA	33.90	41.67	46.67	39.62	40.00	22.22	31.43	33.77	47.83	39.47	NA	34.78	43.06	40.00	38.46	36.11	39.47	33.82	32.83	-0.99	0.544922	0.780071
K	alternative_acceptor	PSMA3	chr14	+	chr14:58724717-58727665;chr14:58724717-58727676	chr14:58724717-58727686		chr14:58727666-58727676;chr14:58727677-58727686	chr14:58727676-58727677;chr14:58727686-58727687		10.64	0.00	0.00	13.95	0.00	0.00	0.00	12.50	16.07	0.00	0.00	8.59	0.00	10.00	6.67	13.28	6.85	0.00	0.00	0.00	0.00	4.55	15.00	0.00	NA	0.00	0.00	10.77	0.00	10.74	12.50	0.00	0.00	14.29	11.76	0.00	0.00	10.32	10.32	0.026310	0.546324
K	intron_retention	TCIRG1	chr11	+	chr11:67810499-67810837				chr11:67810498-67810499;chr11:67810837-67810838		38.69	56.00	49.46	NA	45.45	NA	7.27	6.86	9.84	7.69	11.11	0.00	9.32	9.82	30.77	7.58	12.77	4.55	30.77	37.80	39.13	40.62	44.58	23.08	48.65	33.54	52.59	32.61	32.35	30.77	32.84	47.37	28.57	53.06	46.27	35.71	29.67	33.19	3.52	0.949816	1.000000
N	jcn_only_AD	UBE2L3	chr22	+	chr22:21965333-21975803	chr22:21968955-21975803		chr22:21965333-21968954	chr22:21965332-21965333		1.18	0.00	1.22	5.98	1.62	2.63	0.53	2.76	0.78	2.53	2.50	2.33	0.00	1.52	0.65	3.14	1.12	3.19	0.00	1.12	0.00	2.19	2.30	3.73	0.00	2.03	0.00	0.00	1.06	2.58	1.11	0.00	0.61	0.49	1.64	1.41	0.00	1.35	1.35	0.001934	0.128812
K	alternative_donor	HSD17B14	chr19	-	chr19:49316606-49316712	chr19:49316606-49316689		chr19:49316690-49316712	chr19:49316712-49316713		0.00	1.80	10.00	0.00	2.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.17	4.76	0.00	2.50	2.47	0.00	3.65	2.86	0.00	0.00	0.00	0.00	6.82	0.00	3.26	4.65	1.67	1.72	1.98	1.43	-0.55	0.672715	0.857020
N	jcn_only_AA	NUCKS1	chr1	-	chr1:205688802-205689628	chr1:205688805-205689628		chr1:205688802-205688804	chr1:205688801-205688802		98.73	100.00	97.06	100.00	100.00	100.00	98.30	100.00	95.71	96.55	98.68	97.78	97.33	97.92	97.25	96.97	96.61	96.20	95.28	100.00	94.62	100.00	97.46	100.00	98.29	95.31	97.41	100.00	99.22	100.00	100.00	94.78	97.62	96.97	99.06	100.00	97.96	99.37	1.41	0.405404	0.677600
N	jcn_only_AD	NOC2L	chr1	-	chr1:881034-881552	chr1:881034-881526		chr1:881527-881552	chr1:881552-881553		0.00	6.67	3.45	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	2.04	5.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.200682	0.657607
N	coord_cassette	SLC11A1	chr2	+	chr2:219252679-219257703	chr2:219252679-219255920;chr2:219256011-219256098;chr2:219256219-219257703		chr2:219255921-219256010;chr2:219256099-219256218			94.72	100.00	89.04	100.00	96.77	100.00	100.00	98.40	100.00	100.00	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	87.50	94.38	92.93	94.12	93.33	100.00	100.00	97.35	96.83	95.35	100.00	100.00	100.00	94.67	100.00	92.86	91.49	94.12	100.00	97.88	-2.12	0.770695	0.887901
N	alternative_acceptor	SNHG15	chr7	-	chr7:45022922-45023420	chr7:45022955-45023420		chr7:45022922-45022954	chr7:45022921-45022922		10.00	8.00	7.69	8.59	8.11	8.44	NA	0.00	2.58	4.92	7.14	10.81	NA	0.00	3.86	4.39	4.76	4.44	5.88	4.76	7.05	11.48	9.80	11.76	0.00	7.22	6.02	7.50	10.26	10.92	5.15	7.32	8.60	11.32	9.09	11.88	6.94	4.96	-1.98	0.679598	0.880186
K	intron_retention	SHARPIN	chr8	-	chr8:145154334-145154412				chr8:145154333-145154334;chr8:145154412-145154413		4.35	9.21	8.82	5.88	2.38	8.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	6.90	10.00	5.26	6.25	7.27	14.29	0.00	4.35	2.17	0.00	5.41	0.00	9.09	14.63	11.11	5.88	11.43	6.06	4.54	4.35	-0.19	0.947417	1.000000
K	intron_retention	FCGRT	chr19	+	chr19:50016501-50017138				chr19:50016500-50016501;chr19:50017138-50017139		100.00	98.88	100.00	100.00	100.00	NA	92.31	100.00	NA	89.47	100.00	100.00	100.00	100.00	NA	100.00	96.67	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.972932	1.000000
N	jcn_only_AA	PLOD3	chr7	-	chr7:100853924-100854871	chr7:100853955-100854871		chr7:100853924-100853954	chr7:100853923-100853924		100.00	92.86	100.00	100.00	96.67	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.00	100.00	100.00	88.24	92.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	0.00	0.481858	0.740911
K	intron_retention	SIRT7	chr17	-	chr17:79871757-79871962				chr17:79871756-79871757;chr17:79871962-79871963		6.80	3.21	8.77	3.70	6.67	3.85	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.88	0.00	6.45	7.23	4.76	5.88	7.34	9.09	8.22	3.70	4.55	0.00	4.00	11.43	8.80	5.56	3.94	2.67	4.55	7.79	3.58	5.25	1.67	0.934541	1.000000
N	alternative_donor	SMG5	chr1	-	chr1:156233362-156234104;chr1:156233362-156235571	chr1:156233362-156236075		chr1:156234105-156235571;chr1:156235572-156236075	chr1:156235571-156235572;chr1:156236075-156236076		5.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	NA	0.00	NA	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	EEF2	chr19	-	chr19:3976299-3978025				chr19:3976298-3976299;chr19:3978025-3978026		86.02	92.98	90.28	92.65	89.02	95.38	85.21	90.43	81.97	91.16	90.85	91.53	86.65	84.31	85.71	88.97	92.36	91.35	89.04	92.39	92.25	91.28	89.50	91.82	91.58	100.00	85.21	89.77	89.96	92.59	87.59	92.96	89.96	90.79	92.16	91.80	89.50	89.01	-0.49	0.462410	1.000000
N	cassette	SMU1	chr9	-	chr9:33048257-33056110	chr9:33048257-33053120;chr9:33053289-33056110		chr9:33053121-33053288			100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	97.92	100.00	100.00	93.48	100.00	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	0.00	0.482818	0.773418
N	jcn_only_AA	BAX	chr19	+	chr19:49464172-49464739;chr19:49464172-49464827	chr19:49464172-49464788		chr19:49464740-49464788;chr19:49464789-49464827	chr19:49464788-49464789;chr19:49464827-49464828		83.74	88.40	87.01	77.86	85.48	77.03	89.38	78.95	86.84	92.59	89.66	91.89	87.27	88.39	81.55	88.37	88.37	93.33	87.33	86.58	83.38	83.17	87.34	85.19	92.44	85.37	91.50	85.26	89.47	87.00	84.38	82.14	85.52	79.51	87.50	80.60	87.87	84.88	-2.99	0.042995	0.663989
N	alternative_acceptor	GPX4	chr19	+	chr19:1106459-1106545;chr19:1106459-1106522;chr19:1106459-1106571;chr19:1106459-1106508	chr19:1106459-1106538		chr19:1106509-1106522;chr19:1106523-1106538;chr19:1106539-1106545;chr19:1106546-1106571	chr19:1106522-1106523;chr19:1106538-1106539;chr19:1106545-1106546;chr19:1106571-1106572		95.19	95.97	96.75	93.17	96.02	93.16	95.88	96.74	95.53	93.84	93.84	96.15	96.73	92.86	92.93	93.67	96.44	96.83	94.87	96.20	96.23	97.01	94.74	93.91	96.28	91.25	96.45	94.78	94.33	93.72	94.16	94.76	93.01	96.86	96.92	97.06	95.92	94.67	-1.25	0.325304	0.709013
N	alternative_donor	SDCCAG8	chr1	+	chr1:243507634-243542022	chr1:243525695-243542022		chr1:243507634-243525694	chr1:243507633-243507634		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	10.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.373901	0.650093
N	alternative_acceptor	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62457994-62458083;chr11:62457988-62458083	chr11:62458021-62458083		chr11:62457988-62457993;chr11:62457994-62458020	chr11:62457987-62457988;chr11:62457993-62457994		1.89	3.11	3.23	2.38	4.40	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	3.23	2.04	0.00	2.44	4.35	2.43	0.00	3.12	0.00	0.00	2.56	7.35	4.92	4.98	2.33	2.50	3.57	2.29	0.94	-1.35	0.981784	0.994765
K	cassette	OAZ2	chr15	-	chr15:64982749-64995227	chr15:64982749-64983632;chr15:64983791-64995227		chr15:64983633-64983790			100.00	100.00	97.19	95.00	97.22	100.00	100.00	99.14	99.19	98.06	99.20	100.00	99.02	99.37	98.82	98.43	98.36	100.00	100.00	98.94	97.80	95.83	97.92	97.73	100.00	100.00	96.92	100.00	100.00	100.00	96.34	96.97	100.00	98.65	100.00	100.00	100.00	99.25	-0.75	0.183533	0.709176
K	cassette	UROD	chr1	+	chr1:45478888-45479265	chr1:45478888-45478963;chr1:45479027-45479265		chr1:45478964-45479026			93.94	94.92	93.33	100.00	100.00	100.00	98.39	100.00	97.78	98.04	96.61	100.00	98.39	100.00	98.33	95.83	97.44	100.00	90.00	92.59	91.67	93.75	93.94	100.00	100.00	100.00	92.73	100.00	96.61	100.00	87.50	100.00	92.16	97.78	96.43	100.00	96.66	96.97	0.31	0.991760	0.997468
K	cassette	EIF4G2	chr11	-	chr11:10822635-10823595	chr11:10822635-10823207;chr11:10823322-10823595		chr11:10823208-10823321			57.58	56.00	61.00	NA	65.00	NA	76.86	73.12	75.65	67.22	69.11	64.27	76.95	68.73	74.87	65.28	67.31	67.27	NA	58.67	72.22	61.03	58.37	59.42	68.18	63.83	65.84	69.75	70.59	66.67	50.00	65.34	NA	61.16	62.60	55.83	72.52	61.25	-11.27	0.259568	0.709176
N	jcn_only_AD	ALYREF	chr17	-	chr17:79846460-79846991;chr17:79846460-79846751	chr17:79846460-79847057		chr17:79846752-79846991;chr17:79846992-79847057	chr17:79846991-79846992;chr17:79847057-79847058		98.48	97.28	94.44	98.99	99.53	98.10	98.33	97.73	97.22	99.25	98.96	99.08	98.77	98.08	97.62	99.25	99.34	99.26	99.20	98.55	98.63	98.86	98.44	97.96	100.00	95.45	97.44	99.39	98.27	98.12	93.83	95.96	99.36	99.42	98.01	97.63	98.98	97.91	-1.08	0.078013	0.627804
N	alternative_last_exon	C1GALT1	chr7	+	chr7:5959598-5965262	chr7:5959598-5963017	chr7:5965263-5966181	chr7:5963018-5963176			NA	NA	NA	NA	NA	NA	91.30	92.59	94.59	96.43	96.43	95.83	88.89	78.57	84.85	85.71	93.10	93.94	60.00	84.62	78.79	85.00	87.88	85.19	38.46	77.27	81.58	83.33	82.61	60.00	86.11	89.83	81.25	93.75	91.67	92.65	81.25	84.62	3.37	0.310452	0.513281
K	intron_retention		chr3	+	chr3:52514312-52518528				chr3:52514311-52514312;chr3:52518528-52518529		9.68	36.67	17.02	NA	NA	NA	1.72	9.09	0.00	NA	0.00	NA	3.85	0.00	9.09	0.00	0.00	NA	NA	4.35	NA	NA	10.34	NA	16.67	NA	19.51	NA	13.33	NA	NA	23.53	NA	NA	15.62	8.33	10.26	6.72	-3.54	0.983874	1.000000
K	cassette	BECN1	chr17	-	chr17:40962947-40966541	chr17:40962947-40965965;chr17:40966027-40966541		chr17:40965966-40966026			85.71	100.00	95.00	NA	90.00	NA	100.00	100.00	93.33	82.76	89.47	88.00	91.89	86.96	97.14	85.19	84.44	82.61	72.73	95.45	100.00	88.89	88.89	81.82	NA	92.00	96.67	80.00	95.83	82.61	82.61	89.74	80.00	85.71	93.55	85.71	91.89	89.48	-2.41	0.809739	0.936947
N	alternative_acceptor	GALNS	chr16	-	chr16:88880934-88884414	chr16:88883826-88884414		chr16:88880934-88883825	chr16:88880933-88880934		20.59	13.04	24.39	10.00	9.09	NA	6.67	6.67	9.30	6.52	9.26	2.70	8.82	6.67	19.23	12.00	13.04	0.00	7.69	18.18	4.08	10.00	16.22	9.52	16.67	15.62	21.21	8.70	11.54	5.56	13.64	28.00	6.67	20.00	20.00	13.79	8.26	14.63	6.37	0.242087	0.696516
K	jcn_only_AA	LY6E	chr8	+	chr8:144102851-144102982	chr8:144102851-144102965		chr8:144102966-144102982	chr8:144102982-144102983		1.80	0.00	1.67	0.00	2.08	1.92	1.86	1.74	2.29	1.83	1.15	3.22	0.86	2.03	1.94	2.15	3.42	5.42	0.00	1.69	1.38	4.35	0.00	5.97	0.00	1.13	1.17	2.10	0.00	4.77	0.90	1.34	0.00	2.33	0.00	1.79	0.00	1.71	1.71	0.016512	0.537091
N	jcn_only_AD		chr6	-	chr6:149826841-149842195	chr6:149826841-149833290					100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	97.56	100.00	95.45	100.00	100.00	0.00	0.188131	0.657607
N	alternative_acceptor	ABR	chr17	-	chr17:973249-975853	chr17:973331-975853		chr17:973249-973330	chr17:973248-973249		100.00	100.00	95.59	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	NA	97.62	100.00	99.12	100.00	100.00	0.00	0.363217	0.709013
K	alternative_last_exon	SSSCA1	chr11	+	chr11:65338442-65340833;chr11:65338442-65339913	chr11:65338442-65338861	chr11:65340834-65341663;chr11:65339914-65340363	chr11:65338862-65339359			32.14	74.19	21.15	84.09	76.74	88.64	44.90	26.09	48.48	72.97	66.67	66.67	55.56	34.78	60.53	85.11	82.35	91.67	82.22	50.00	62.71	69.57	44.44	70.59	74.55	22.73	32.43	65.22	57.14	75.76	57.89	44.83	83.87	73.68	62.96	66.67	74.37	33.46	-40.91	0.003846	0.110062
N	jcn_only_AD	PGS1	chr17	+	chr17:76419377-76420141;chr17:76415807-76420141;chr17:76416405-76420141	chr17:76415757-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		68.89	86.96	71.25	57.14	76.00	57.69	91.67	58.06	69.77	68.18	69.23	60.00	63.64	43.14	43.45	47.62	50.00	NA	75.00	70.83	73.21	58.33	68.42	77.27	NA	66.67	66.67	71.43	78.95	71.43	75.86	63.64	75.00	44.44	NA	47.69	75.00	67.78	-7.22	0.064593	0.577009
K	alternative_donor	MRPL51	chr12	-	chr12:6602139-6602624;chr12:6602139-6602882;chr12:6602139-6602839	chr12:6602139-6602223		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		70.59	62.32	69.64	57.14	60.00	39.29	69.70	82.35	80.95	58.33	67.65	54.84	63.64	80.00	80.39	85.48	75.34	79.17	75.41	83.33	78.87	96.97	85.25	91.67	65.45	81.25	76.00	82.50	76.71	83.78	80.95	72.34	66.00	65.71	76.19	71.88	65.72	81.10	15.38	0.000903	0.084512
K	intron_retention	WDR91	chr7	-	chr7:134871068-134871723				chr7:134871067-134871068;chr7:134871723-134871724		0.00	4.46	0.00	0.00	3.64	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	5.08	7.69	4.17	0.00	3.12	NA	2.35	0.00	0.00	NA	6.82	NA	9.09	0.00	4.41	0.00	5.71	0.00	3.38	3.85	0.47	0.804237	1.000000
N	alternative_acceptor	ARL2BP	chr16	+	chr16:57284420-57286153;chr16:57284420-57289806	chr16:57284420-57286077		chr16:57286078-57286153;chr16:57286154-57289806	chr16:57286153-57286154;chr16:57289806-57289807		93.33	84.21	97.62	84.62	90.48	76.92	100.00	100.00	100.00	96.97	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	71.43	100.00	89.29	95.45	93.55	94.74	NA	100.00	100.00	94.12	96.15	94.12	91.67	100.00	43.75	100.00	100.00	100.00	84.21	100.00	15.79	0.169256	0.660713
K	intron_retention	MICAL1	chr6	-	chr6:109767616-109767898				chr6:109767615-109767616;chr6:109767898-109767899		5.71	7.25	8.33	10.53	6.12	NA	1.52	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	10.67	5.95	6.25	6.58	0.00	12.05	8.54	16.22	3.03	4.49	4.55	8.45	8.62	10.91	6.78	8.33	5.88	6.00	7.08	1.08	0.757608	1.000000
K	cassette	SDSL	chr12	+	chr12:113860283-113866224	chr12:113860283-113865766;chr12:113865962-113866224		chr12:113865767-113865961			97.83	100.00	100.00	83.33	91.67	NA	98.18	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	99.21	91.67	93.75	NA	100.00	100.00	98.28	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.904170	0.971172
N	jcn_only_AA	RHOC	chr1	-	chr1:113247824-113249699;chr1:113248875-113249699;chr1:113247819-113249699;chr1:113247746-113249699	chr1:113247791-113249699		chr1:113247746-113247790;chr1:113247791-113247818;chr1:113247819-113247823;chr1:113247824-113248874	chr1:113247745-113247746;chr1:113247790-113247791;chr1:113247818-113247819;chr1:113247823-113247824		96.83	91.67	92.31	86.11	95.00	92.59	95.16	94.97	91.67	89.34	90.57	90.11	92.94	92.22	94.03	96.09	92.59	86.42	90.00	96.08	97.83	91.43	88.64	90.43	100.00	90.91	91.18	89.86	95.24	94.53	96.55	97.44	100.00	93.94	100.00	93.68	94.05	95.53	1.48	0.858878	0.944239
N	cassette	TMEM150B	chr19	-	chr19:55831986-55834015	chr19:55831986-55832336;chr19:55832413-55834015		chr19:55832337-55832412			100.00	100.00	100.00	NA	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.36	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	MAP3K11	chr11	-	chr11:65367240-65373231	chr11:65367240-65373063;chr11:65373114-65373231		chr11:65373064-65373113			5.00	0.00	2.40	0.00	0.00	0.00	2.80	0.00	0.00	2.04	0.00	0.00	2.20	0.00	0.00	1.37	3.12	0.00	0.00	4.76	1.37	0.00	2.22	0.00	0.00	4.17	0.00	0.00	0.00	3.45	2.47	2.46	0.00	0.00	0.00	4.69	0.00	3.32	3.32	0.116214	0.709176
N	cassette	ACP2	chr11	-	chr11:47264873-47266855	chr11:47264873-47266285;chr11:47266419-47266855		chr11:47266286-47266418			96.64	93.10	92.76	100.00	97.56	NA	99.21	98.74	98.84	100.00	98.39	100.00	100.00	98.85	98.79	99.13	99.44	100.00	100.00	97.28	96.23	100.00	94.90	100.00	100.00	99.03	97.34	100.00	97.50	100.00	95.74	93.08	100.00	98.15	93.90	97.92	100.00	98.01	-1.99	0.450571	0.751589
N	cassette	SLC25A19	chr17	-	chr17:73269721-73279503	chr17:73269721-73273433;chr17:73273565-73279503		chr17:73273434-73273564			93.33	100.00	100.00	91.30	100.00	NA	100.00	100.00	100.00	95.65	100.00	NA	100.00	94.12	100.00	97.87	93.02	NA	100.00	90.00	96.97	94.74	91.67	NA	100.00	100.00	96.77	100.00	98.41	100.00	91.67	88.89	95.24	93.94	100.00	100.00	100.00	93.72	-6.28	0.055697	0.590788
N	cassette	NEMF	chr14	-	chr14:50251723-50251937	chr14:50251723-50251809;chr14:50251854-50251937		chr14:50251810-50251853			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MPHOSPH10	chr2	+	chr2:71376584-71376995				chr2:71376583-71376584;chr2:71376995-71376996		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.33	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	17.65	7.69	1.61	3.57	3.57	0.00	0.00	0.00	0.00	0.679593	1.000000
K	alternative_last_exon	DDX3X	chrX	+	chrX:41206705-41223526	chrX:41206705-41207112,chrX:41206705-41206892	chrX:41223527-41223725	chrX:41207113-41207168			99.34	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.07	98.67	97.22	100.00	100.00	100.00	100.00	100.00	0.00	0.292905	0.491468
K	alternative_last_exon	ZRANB2	chr1	-	chr1:71531432-71532458;chr1:71530821-71532458	chr1:71531436-71532458	chr1:71528974-71530820	chr1:71531361-71531435			10.53	NA	6.82	20.00	25.00	33.33	15.79	36.84	13.33	33.33	28.57	36.36	20.00	15.00	20.00	19.05	32.00	10.00	26.67	8.70	20.00	5.56	11.76	9.09	10.00	12.50	9.68	8.33	13.64	23.53	6.67	14.29	12.50	13.64	11.76	9.09	15.79	11.52	-4.27	0.726391	0.828356
N	jcn_only_AD	IFI44	chr1	+	chr1:79126377-79128388;chr1:79125165-79128388;chr1:79127142-79128388	chr1:79126340-79128388		chr1:79125165-79126339;chr1:79126340-79126376;chr1:79126377-79127141	chr1:79125164-79125165;chr1:79126339-79126340;chr1:79126376-79126377		95.66	95.24	100.00	90.91	100.00	96.59	100.00	97.66	97.17	95.83	100.00	99.05	100.00	98.25	95.20	98.82	100.00	100.00	100.00	93.55	98.68	100.00	100.00	96.54	100.00	93.90	96.61	97.92	100.00	96.85	97.45	93.66	100.00	96.88	100.00	96.48	100.00	96.56	-3.44	0.021095	0.343374
N	jcn_only_AA	UBE2M	chr19	-	chr19:59068195-59068258;chr19:59068158-59068258	chr19:59068162-59068258		chr19:59068158-59068161;chr19:59068162-59068194	chr19:59068157-59068158;chr19:59068161-59068162		0.80	0.00	0.00	0.00	2.14	0.00	0.00	0.00	2.02	0.00	0.00	1.59	0.00	3.19	0.87	1.94	2.00	3.23	0.00	2.25	2.61	1.54	1.27	5.00	0.00	2.17	1.12	0.00	0.00	3.12	3.49	0.00	0.00	1.79	0.00	2.30	0.00	2.21	2.21	0.015739	0.537091
N	jcn_only_AA	IFFO1	chr12	-	chr12:6650809-6657230	chr12:6651020-6657230		chr12:6650809-6651019	chr12:6650808-6650809		3.45	0.00	3.64	0.00	6.73	NA	0.00	0.00	0.00	0.00	0.00	NA	2.52	2.38	0.00	2.70	0.00	NA	1.45	0.00	2.56	0.00	3.59	6.25	0.00	4.76	0.00	0.00	1.65	0.00	7.69	0.00	1.41	0.00	0.00	3.03	0.70	2.92	2.21	0.142369	0.663989
K	alternative_acceptor	CELF1	chr11	-	chr11:47490444-47493742;chr11:47493655-47493742	chr11:47492442-47493742		chr11:47490444-47492441;chr11:47492442-47493654	chr11:47490443-47490444;chr11:47492441-47492442		10.53	15.38	3.08	NA	70.00	7.14	2.50	2.22	1.45	2.86	2.63	4.35	2.70	1.82	1.27	2.08	2.86	4.17	17.65	21.05	4.76	20.00	9.09	8.33	11.63	3.57	6.45	7.69	21.05	5.00	7.14	3.57	9.09	7.41	6.06	3.03	10.36	5.35	-5.00	0.606421	0.848883
N	alternative_acceptor	DROSHA	chr5	-	chr5:31409440-31410852	chr5:31409850-31410852		chr5:31409440-31409849	chr5:31409439-31409440		7.69	0.00	7.14	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	5.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AD	CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660872;chr14:95660257-95660551	chr14:95660257-95660868		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	9.09	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.189841	0.657607
K	jcn_only_AA	SP110	chr2	-	chr2:231067439-231072705	chr2:231067445-231072705		chr2:231067439-231067444	chr2:231067438-231067439		96.30	100.00	100.00	NA	100.00	93.26	100.00	100.00	95.65	100.00	100.00	92.74	100.00	100.00	98.74	100.00	100.00	100.00	100.00	95.37	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177997	0.663989
N	alternative_donor	AD000671.6	chr19	-	chr19:36232130-36233296;chr19:36232130-36233167	chr19:36232130-36233290		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		4.76	5.26	5.26	4.55	1.47	8.82	5.17	5.88	0.00	0.00	7.84	0.00	0.00	6.25	2.70	0.00	2.04	0.00	6.03	0.00	0.00	2.63	0.83	0.00	6.82	7.14	6.90	2.50	0.98	1.85	2.44	3.64	5.31	4.55	3.45	0.00	5.29	5.32	0.04	0.816150	0.942369
N	alternative_acceptor		chr3	+	chr3:183910685-183911078	chr3:183910685-183910889		chr3:183910890-183911078	chr3:183911078-183911079		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	FAM65A	chr16	+	chr16:67574405-67574454;chr16:67574405-67574505	chr16:67574405-67574481		chr16:67574455-67574481;chr16:67574482-67574505	chr16:67574481-67574482;chr16:67574505-67574506		100.00	100.00	98.39	NA	NA	NA	100.00	100.00	97.96	98.04	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	NA	95.24	NA	90.91	93.75	100.00	100.00	96.55	96.15	NA	100.00	NA	NA	95.83	NA	100.00	97.37	96.00	100.00	100.00	0.00	0.184977	0.663989
N	jcn_only_AA	BET1L	chr11	-	chr11:206044-207302;chr11:206039-207302	chr11:206061-207302		chr11:206039-206043;chr11:206044-206060	chr11:206038-206039;chr11:206043-206044		0.00	0.00	0.00	NA	0.00	0.00	5.88	0.00	0.00	0.00	4.26	4.17	0.00	0.00	0.00	8.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	TNFAIP2	chr14	+	chr14:103598100-103599052;chr14:103598100-103599086;chr14:103598100-103599038	chr14:103598100-103598983		chr14:103598984-103599038;chr14:103599039-103599052;chr14:103599053-103599086	chr14:103599038-103599039;chr14:103599052-103599053;chr14:103599086-103599087		1.65	1.39	1.91	0.00	0.00	0.00	0.00	0.41	0.27	0.13	0.88	0.12	0.58	0.32	0.87	0.21	0.53	0.20	0.00	0.99	0.00	0.90	1.17	0.85	0.00	1.15	1.05	1.03	0.97	1.06	1.02	0.89	5.00	1.59	1.59	1.20	0.29	1.00	0.71	0.782863	0.917646
N	alternative_acceptor		chr7	+	chr7:4825084-4825197	chr7:4825084-4825152		chr7:4825153-4825197	chr7:4825197-4825198		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	NA	NA	92.00	NA	100.00	100.00	88.89	100.00	91.30	100.00	100.00	100.00	100.00	100.00	95.83	NA	100.00	96.15	100.00	100.00	100.00	0.00	0.175156	0.660713
N	alternative_donor		chr10	-	chr10:135176438-135178202	chr10:135176438-135178161		chr10:135178162-135178202	chr10:135178202-135178203		100.00	96.75	100.00	100.00	95.83	96.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	98.89	97.92	100.00	100.00	96.59	96.97	98.57	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	96.18	100.00	98.41	100.00	100.00	100.00	0.00	0.176418	0.563271
N	alternative_acceptor	CCDC53	chr12	-	chr12:102433781-102437882;chr12:102433757-102437882	chr12:102433754-102437882		chr12:102433754-102433756;chr12:102433757-102433780	chr12:102433753-102433754;chr12:102433756-102433757		42.31	31.03	34.69	20.00	40.00	NA	31.71	24.14	20.00	20.00	27.03	21.05	25.00	33.33	35.90	27.78	29.03	25.00	23.53	33.33	29.63	35.71	35.71	22.22	33.33	35.48	20.93	26.67	30.00	22.22	26.32	37.14	41.18	23.81	38.46	27.27	31.37	33.33	1.96	0.691408	0.883019
K	intron_retention	PPP6R1	chr19	-	chr19:55756554-55756632				chr19:55756553-55756554;chr19:55756632-55756633		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	4.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.477070	1.000000
K	intron_retention		chr3	+	chr3:52524248-52524720				chr3:52524247-52524248;chr3:52524720-52524721		5.32	8.11	6.33	NA	7.14	NA	1.45	0.00	0.00	0.00	1.43	NA	1.89	0.00	0.00	0.00	0.00	0.00	3.57	7.89	5.88	0.00	6.93	0.00	7.69	5.88	4.11	0.00	5.33	NA	0.00	7.69	0.00	0.00	6.67	0.00	2.73	2.66	-0.07	0.988798	1.000000
K	intron_retention	MAP1S	chr19	+	chr19:17838306-17844089				chr19:17838305-17838306;chr19:17844089-17844090		88.31	100.00	95.00	86.84	89.26	92.86	100.00	100.00	100.00	90.00	88.33	NA	100.00	87.76	89.66	89.29	91.67	NA	81.25	91.30	85.29	100.00	90.44	100.00	81.67	100.00	89.87	88.24	92.96	81.25	86.67	81.36	82.54	100.00	100.00	94.74	91.27	89.81	-1.47	0.873445	1.000000
N	alternative_donor	GNB2	chr7	+	chr7:100274525-100274974;chr7:100274590-100274974	chr7:100274423-100274974		chr7:100274423-100274524;chr7:100274525-100274589	chr7:100274422-100274423;chr7:100274524-100274525		97.32	95.75	96.44	96.36	99.32	100.00	99.53	99.66	99.36	100.00	99.40	100.00	99.62	99.32	98.29	99.53	100.00	100.00	98.90	97.31	97.28	96.04	98.02	95.92	94.74	96.49	95.56	97.74	98.48	98.46	96.50	95.61	97.32	97.28	96.27	96.93	98.11	97.31	-0.80	0.905869	0.981249
N	alternative_donor	NTAN1	chr16	-	chr16:15138265-15140213;chr16:15138265-15141298	chr16:15138265-15141274		chr16:15140214-15141274;chr16:15141275-15141298	chr16:15141274-15141275;chr16:15141298-15141299		3.95	0.00	0.00	0.00	3.77	6.67	2.03	2.82	2.78	1.00	1.18	3.30	0.00	4.05	0.00	3.90	2.21	1.56	0.00	0.00	2.56	2.17	2.46	1.67	0.00	8.22	2.56	3.85	2.16	0.00	5.77	3.12	12.00	4.81	4.88	2.70	0.00	4.00	4.00	0.450047	0.710676
K	intron_retention		chr10	+	chr10:82273820-82275959				chr10:82273819-82273820;chr10:82275959-82275960		1.85	0.00	2.08	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.96	0.00	0.00	NA	1.64	NA	0.00	0.00	1.56	0.00	0.00	2.44	0.00	0.00	0.00	5.41	0.00	NA	2.94	0.00	2.63	0.00	1.16	1.16	0.343266	1.000000
K	alternative_acceptor	CNOT3	chr19	+	chr19:54657578-54657680;chr19:54657578-54658995	chr19:54657578-54659046		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		75.00	70.49	81.25	89.13	81.25	88.51	93.33	84.62	91.67	100.00	95.24	95.65	95.24	82.35	93.75	96.55	95.00	93.75	83.10	75.00	81.25	94.12	75.86	90.00	75.00	81.82	82.86	86.96	87.50	90.38	84.62	77.36	83.12	78.95	77.27	76.92	83.11	82.08	-1.03	0.541431	0.821403
N	alternative_acceptor	LYL1	chr19	-	chr19:13211543-13211650	chr19:13211563-13211650		chr19:13211543-13211562	chr19:13211542-13211543		80.95	90.00	85.71	NA	85.14	NA	86.27	100.00	NA	NA	82.93	NA	97.30	NA	NA	NA	84.38	NA	86.89	80.00	76.92	NA	81.82	NA	84.75	76.47	84.62	NA	80.00	NA	NA	60.00	77.78	83.33	77.78	NA	86.58	80.47	-6.11	0.656938	0.874938
K	intron_retention	SCAF11	chr12	-	chr12:46315978-46316245				chr12:46315977-46315978;chr12:46316245-46316246		5.88	0.00	1.85	0.00	8.57	3.45	3.57	0.00	0.00	0.00	1.14	0.00	1.85	4.26	0.00	2.38	1.06	0.00	7.69	2.13	13.79	0.00	2.63	3.12	0.00	1.79	7.32	4.55	7.50	4.76	0.00	3.92	7.14	5.77	2.27	0.00	2.71	1.96	-0.75	0.766049	1.000000
N	jcn_only_AD	POLR1D	chr13	+	chr13:28225490-28239822;chr13:28222587-28239822	chr13:28222591-28239822		chr13:28222587-28222590;chr13:28222591-28225489	chr13:28222586-28222587;chr13:28222590-28222591		95.24	100.00	96.97	96.30	97.37	91.67	100.00	94.12	93.94	100.00	100.00	100.00	100.00	90.00	100.00	97.37	100.00	100.00	97.06	96.00	100.00	97.06	96.00	93.10	91.30	95.00	96.97	95.24	100.00	93.33	100.00	97.37	88.89	97.22	95.56	97.73	98.53	95.12	-3.41	0.644719	0.818639
N	alternative_acceptor	SLC7A7	chr14	-	chr14:23239202-23243141;chr14:23242926-23243141	chr14:23242938-23243141		chr14:23239202-23242925;chr14:23242926-23242937	chr14:23239201-23239202;chr14:23242925-23242926		0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	1.73	0.00	-1.73	0.102097	0.598353
N	alternative_donor	MYL6B	chr12	+	chr12:56549377-56551251;chr12:56549386-56551251;chr12:56549278-56551251	chr12:56549814-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		0.00	2.13	7.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	NA	2.22	6.67	2.70	NA	0.00	NA	3.85	7.14	4.17	NA	0.00	0.00	5.88	6.06	2.27	NA	0.00	0.00	2.17	2.94	0.77	0.369817	0.650093
N	jcn_only_AA	C18orf8	chr18	+	chr18:21110262-21110536;chr18:21110262-21110363;chr18:21110262-21110350	chr18:21110262-21110474		chr18:21110351-21110363;chr18:21110364-21110474;chr18:21110475-21110536	chr18:21110363-21110364;chr18:21110474-21110475;chr18:21110536-21110537		3.95	4.23	4.55	6.25	6.35	7.35	13.64	4.76	5.41	13.89	16.00	6.90	13.04	3.12	10.53	10.53	5.26	0.00	6.15	0.00	9.09	6.82	3.39	9.09	4.26	7.89	1.49	6.45	9.38	5.56	1.69	2.73	6.76	0.00	5.88	5.41	6.46	3.54	-2.92	0.060891	0.663989
K	alternative_acceptor	CDV3	chr3	+	chr3:133305567-133306002;chr3:133305567-133307196;chr3:133305567-133306005	chr3:133305567-133306739		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		25.81	0.00	34.40	0.00	0.00	0.00	33.14	28.78	27.68	36.56	37.54	40.47	41.34	32.56	40.00	33.22	46.99	51.18	NA	32.81	8.33	33.01	29.91	32.58	0.00	25.35	26.25	19.23	22.39	10.20	7.69	23.21	0.00	34.87	35.29	32.34	0.00	27.30	27.30	0.332876	0.709013
N	alternative_donor	SCN1B	chr19	+	chr19:35526916-35530020;chr19:35528259-35530020;chr19:35526051-35530020	chr19:35524644-35530020		chr19:35524644-35526050;chr19:35526051-35526915;chr19:35526916-35528258	chr19:35524643-35524644;chr19:35526050-35526051;chr19:35526915-35526916		97.53	100.00	88.77	100.00	100.00	100.00	100.00	95.65	98.33	100.00	100.00	92.31	100.00	97.30	95.96	98.48	100.00	88.57	100.00	93.75	95.83	92.59	100.00	82.98	100.00	92.98	95.00	95.00	100.00	92.06	96.43	93.52	100.00	91.43	100.00	86.14	100.00	96.04	-3.96	0.002254	0.124802
N	intron_retention		chr7	+	chr7:99996964-99997407				chr7:99996963-99996964;chr7:99997407-99997408		0.00	6.25	9.21	10.34	7.89	6.25	NA	10.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12.50	3.77	4.00	8.33	6.90	6.25	18.75	8.16	9.30	NA	27.27	23.53	2.04	2.63	6.35	10.00	11.11	9.38	9.43	3.77	-5.66	0.242750	1.000000
N	jcn_only_AD	PIN4	chrX	+	chrX:71401776-71406310;chrX:71401267-71406310	chrX:71401679-71406310		chrX:71401267-71401678;chrX:71401679-71401775	chrX:71401266-71401267;chrX:71401678-71401679		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	93.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	95.12	100.00	100.00	100.00	99.08	100.00	0.92	0.112347	0.646283
N	jcn_only_AA	SIRT6	chr19	-	chr19:4175211-4175676;chr19:4175149-4175676	chr19:4175109-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		5.71	9.09	17.24	16.67	9.38	11.11	12.00	10.00	13.33	11.11	8.70	18.18	15.38	11.54	6.25	0.00	6.98	7.14	13.04	10.34	7.69	5.88	9.30	7.69	7.69	10.00	10.34	7.41	11.76	26.32	11.43	6.06	13.79	13.33	9.09	12.50	12.52	10.17	-2.35	0.208940	0.663989
K	cassette	FDPS	chr1	+	chr1:155278757-155282045	chr1:155278757-155279854;chr1:155279997-155282045		chr1:155279855-155279996			86.67	100.00	91.80	NA	91.67	NA	96.00	100.00	95.83	98.36	95.18	100.00	96.30	100.00	100.00	97.92	95.77	100.00	100.00	88.89	100.00	100.00	97.14	100.00	NA	75.00	87.72	100.00	93.94	100.00	84.62	87.18	100.00	93.75	97.73	91.43	100.00	87.78	-12.22	0.064923	0.621473
K	cassette	TMEM8A	chr16	-	chr16:422284-424004	chr16:422284-422610;chr16:422728-424004		chr16:422611-422727			97.18	100.00	100.00	94.74	94.34	100.00	96.92	100.00	100.00	97.50	95.31	100.00	100.00	100.00	100.00	100.00	96.67	100.00	97.62	100.00	100.00	86.96	94.29	88.89	100.00	100.00	97.06	96.15	96.15	100.00	98.33	100.00	100.00	96.00	98.15	97.92	100.00	100.00	0.00	0.837012	0.945387
N	jcn_only_AA		chr6	+	chr6:43190380-43190542	chr6:43190380-43190516		chr6:43190517-43190542	chr6:43190542-43190543		100.00	89.47	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	98.41	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.92	100.00	95.65	100.00	99.20	100.00	0.80	0.216698	0.663989
K	intron_retention	HNRNPH1	chr5	-	chr5:179042597-179043126				chr5:179042596-179042597;chr5:179043126-179043127		6.49	0.00	4.71	1.49	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.76	0.00	0.00	0.59	0.00	0.00	0.00	5.97	0.96	2.73	1.82	3.77	0.00	0.00	1.84	1.07	0.43	0.00	6.17	3.57	1.52	2.44	2.96	3.30	0.00	2.98	2.98	0.264835	1.000000
K	cassette	RSRC2	chr12	-	chr12:122990254-122992764	chr12:122990254-122991380;chr12:122991471-122992764		chr12:122991381-122991470			100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.08	96.97	94.12	96.00	93.55	96.92	100.00	100.00	100.00	97.44	100.00	100.00	0.00	0.692961	0.887109
K	intron_retention	TCP1	chr6	-	chr6:160200294-160200658				chr6:160200293-160200294;chr6:160200658-160200659		2.61	3.85	3.48	1.23	2.25	1.32	3.30	0.00	0.00	1.14	0.59	0.74	1.05	0.00	1.15	0.45	0.00	0.00	2.04	4.65	0.00	2.16	1.73	3.00	3.41	1.49	6.00	1.11	1.46	2.63	6.20	5.22	3.09	4.83	2.17	3.42	3.19	2.05	-1.15	0.848960	1.000000
N	alternative_acceptor	GPR137B	chr1	+	chr1:236368551-236370432;chr1:236368551-236371360;chr1:236368551-236376613	chr1:236368551-236371349		chr1:236370433-236371349;chr1:236371350-236371360;chr1:236371361-236376613	chr1:236371349-236371350;chr1:236371360-236371361;chr1:236376613-236376614		84.78	100.00	90.91	97.30	97.44	97.96	89.66	90.62	86.67	93.02	93.88	93.33	88.89	88.89	89.36	91.78	92.16	94.00	86.36	87.10	96.43	91.43	91.89	93.33	87.50	66.67	75.00	93.10	88.57	93.62	84.21	84.62	100.00	91.38	91.67	91.04	89.28	85.94	-3.34	0.087885	0.586065
N	jcn_only_AD	ENY2	chr8	+	chr8:110346632-110348356;chr8:110345993-110348356	chr8:110346636-110348356		chr8:110345993-110346631;chr8:110346632-110346635	chr8:110345992-110345993;chr8:110346631-110346632		0.00	0.00	3.03	0.00	0.00	0.00	8.57	0.00	0.00	0.00	6.06	5.41	8.33	3.33	5.26	4.76	4.76	2.86	0.00	5.71	6.25	9.09	0.00	4.55	0.00	0.00	0.00	8.70	0.00	0.00	3.03	0.00	0.00	9.52	0.00	0.00	0.00	1.51	1.51	0.702612	0.845095
K	alternative_donor	AHSA1	chr14	+	chr14:77924326-77925958	chr14:77924613-77925958		chr14:77924326-77924612	chr14:77924325-77924326		100.00	100.00	100.00	NA	100.00	NA	100.00	98.11	97.67	100.00	100.00	100.00	100.00	100.00	96.49	100.00	100.00	97.50	100.00	100.00	100.00	100.00	97.92	90.91	NA	100.00	97.22	100.00	100.00	90.91	100.00	93.75	100.00	100.00	96.97	100.00	100.00	100.00	0.00	0.363217	0.650093
K	jcn_only_AD	ARPC4,ARPC4-TTLL3	chr3	+	chr3:9834866-9839342;chr3:9834390-9839342	chr3:9834809-9839342		chr3:9834390-9834808;chr3:9834809-9834865	chr3:9834389-9834390;chr3:9834808-9834809		98.01	94.12	95.60	100.00	94.06	100.00	95.34	97.93	97.16	97.54	95.38	98.33	95.31	96.15	96.09	97.62	96.77	97.25	92.98	97.90	100.00	98.36	96.20	98.45	94.74	97.89	96.18	97.22	93.82	97.62	95.76	97.86	95.08	98.33	96.35	95.86	94.91	97.90	2.99	0.000787	0.078190
K	jcn_only_AD	IRF5	chr7	+	chr7:128586061-128586554	chr7:128586089-128586554		chr7:128586061-128586088	chr7:128586060-128586061		98.36	100.00	95.24	NA	100.00	NA	100.00	98.46	97.44	100.00	98.00	100.00	98.23	98.22	98.13	97.72	97.32	98.33	100.00	96.67	NA	97.48	97.16	98.77	100.00	97.94	94.74	97.70	97.53	97.83	96.08	100.00	NA	96.55	100.00	96.40	100.00	98.08	-1.92	0.004572	0.177805
K	cassette	ANP32E	chr1	-	chr1:150193064-150198939	chr1:150193064-150195511;chr1:150195567-150198939		chr1:150195512-150195566			NA	NA	100.00	NA	NA	NA	100.00	100.00	96.97	100.00	100.00	100.00	97.30	92.86	97.22	100.00	100.00	NA	93.33	100.00	94.12	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	98.65	100.00	1.35	0.822816	0.941649
N	jcn_only_AD		chr19	-	chr19:55604031-55604180	chr19:55604031-55604150		chr19:55604151-55604180	chr19:55604180-55604181		95.52	100.00	96.92	100.00	95.65	100.00	100.00	97.22	96.15	100.00	97.50	100.00	100.00	97.67	93.33	100.00	100.00	100.00	100.00	93.67	100.00	100.00	98.81	100.00	100.00	100.00	97.22	100.00	98.39	100.00	95.00	96.25	100.00	100.00	100.00	100.00	100.00	96.37	-3.63	0.012725	0.284107
N	jcn_only_AD	MYO9B	chr19	+	chr19:17313752-17313955;chr19:17313794-17313955;chr19:17313814-17313955;chr19:17313758-17313955	chr19:17313693-17313955		chr19:17313693-17313751;chr19:17313752-17313757;chr19:17313758-17313793;chr19:17313794-17313813	chr19:17313692-17313693;chr19:17313751-17313752;chr19:17313757-17313758;chr19:17313793-17313794		100.00	100.00	100.00	100.00	98.36	NA	97.37	93.42	95.65	99.13	100.00	100.00	99.30	92.86	96.91	99.32	100.00	100.00	100.00	100.00	100.00	99.07	99.06	99.13	100.00	100.00	100.00	97.89	98.65	100.00	100.00	100.00	100.00	98.51	100.00	98.11	100.00	100.00	0.00	0.296188	0.657607
K	intron_retention	NARF	chr17	+	chr17:80441656-80442688				chr17:80441655-80441656;chr17:80442688-80442689		9.60	4.35	13.68	21.43	7.58	15.79	5.71	0.00	9.09	4.55	0.00	7.14	6.82	12.50	10.53	0.00	5.13	10.00	8.45	9.72	8.33	NA	9.68	18.75	9.76	17.14	12.75	7.69	10.00	16.67	5.36	7.81	5.13	18.52	12.90	23.08	6.27	9.66	3.39	0.649698	1.000000
K	intron_retention	CTD-2561B21.7	chr17	-	chr17:78973460-78973784				chr17:78973459-78973460;chr17:78973784-78973785		100.00	98.10	100.00	100.00	97.53	96.70	100.00	100.00	100.00	100.00	100.00	95.83	97.44	100.00	91.30	100.00	100.00	100.00	95.65	100.00	100.00	100.00	94.44	100.00	96.64	100.00	100.00	100.00	97.73	100.00	100.00	100.00	96.67	100.00	100.00	100.00	97.06	100.00	2.94	0.017660	1.000000
K	coord_cassette	SLC22A18	chr11	+	chr11:2929561-2937851	chr11:2929561-2930425;chr11:2930587-2930807;chr11:2930941-2937851		chr11:2930426-2930586;chr11:2930808-2930940			100.00	89.74	92.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	NA	94.12	NA	100.00	100.00	96.43	NA	95.00	100.00	96.55	100.00	86.96	100.00	100.00	95.45	100.00	100.00	0.00	0.349576	0.643829
N	alternative_donor	RASSF4	chr10	+	chr10:45485170-45486395;chr10:45486277-45486395	chr10:45485534-45486395		chr10:45485170-45485533;chr10:45485534-45486276	chr10:45485169-45485170;chr10:45485533-45485534		0.62	0.00	2.27	0.00	0.00	0.00	0.00	0.54	0.49	1.06	0.00	1.64	0.00	0.80	1.16	0.89	0.00	2.94	5.26	1.69	0.72	0.00	0.00	1.96	0.00	1.29	2.08	2.00	0.00	1.32	0.00	0.00	0.00	2.27	0.00	0.69	0.00	0.71	0.71	0.955227	0.984606
N	alternative_acceptor	BAK1	chr6	-	chr6:33540284-33541810;chr6:33535804-33541810	chr6:33541685-33541810		chr6:33535804-33540283;chr6:33540284-33541684	chr6:33535803-33535804;chr6:33540283-33540284		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	80.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	AGPAT3	chr21	+	chr21:45401069-45402184				chr21:45401068-45401069;chr21:45402184-45402185		2.08	0.00	0.00	NA	0.00	0.00	4.35	2.44	2.97	9.59	7.35	10.17	2.06	1.80	4.12	8.43	4.88	8.51	NA	4.88	0.00	0.00	7.69	6.25	0.00	2.99	0.00	0.00	0.00	0.00	3.33	0.00	0.00	8.11	6.52	8.57	0.00	2.71	2.71	0.531444	1.000000
N	cassette	CDC16	chr13	+	chr13:115028490-115037752;chr13:115028490-115037658	chr13:115028490-115030624;chr13:115030716-115037752,chr13:115030716-115037658		chr13:115030625-115030715			100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	90.00	100.00	96.08	100.00	100.00	100.00	0.00	0.256775	0.709176
K	jcn_only_AA	SGSH	chr17	-	chr17:78190992-78194024	chr17:78191027-78194024		chr17:78190992-78191026	chr17:78190991-78190992		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.67	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AA	PIK3R5	chr17	-	chr17:8789920-8790412	chr17:8789923-8790412		chr17:8789920-8789922	chr17:8789919-8789920		72.00	55.88	63.89	NA	65.52	NA	69.30	63.56	68.12	65.61	70.57	71.70	67.03	68.45	60.44	69.31	69.94	68.08	NA	65.26	NA	68.87	63.81	70.62	66.67	72.64	68.29	64.47	71.68	73.68	65.71	66.67	NA	70.71	69.42	69.85	66.85	67.08	0.23	0.387592	0.663989
K	jcn_only_AA	ARHGAP27	chr17	-	chr17:43474391-43475314	chr17:43474595-43475314		chr17:43474391-43474594	chr17:43474390-43474391		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	3.03	1.64	NA	3.28	NA	NA	3.03	10.34	0.00	6.52	0.00	NA	0.00	0.00	0.00	3.45	NA	0.00	3.33	5.17	0.00	0.00	0.00	0.202668	0.663989
K	intron_retention	SCAF1	chr19	+	chr19:50161147-50161464				chr19:50161146-50161147;chr19:50161464-50161465		9.38	2.99	9.30	5.95	5.71	5.65	0.00	4.26	3.64	6.52	5.00	4.17	2.50	2.44	3.45	3.45	7.41	0.00	6.94	4.35	7.69	5.08	8.60	3.23	11.01	1.61	8.97	3.70	3.30	3.57	8.42	9.38	8.45	6.82	8.51	4.84	4.96	4.30	-0.66	0.606314	1.000000
N	cassette	TYMP	chr22	-	chr22:50966147-50967955;chr22:50966147-50967924;chr22:50965979-50967924;chr22:50966147-50967564;chr22:50966162-50968332;chr22:50966162-50967564;chr22:50965979-50968332;chr22:50966147-50968332	chr22:50966147-50966940,chr22:50965979-50966940,chr22:50966162-50966940;chr22:50967040-50967924,chr22:50967040-50967564,chr22:50967040-50967955,chr22:50967040-50968332		chr22:50966941-50967039			88.96	87.59	83.76	88.32	76.36	88.11	99.61	98.19	98.53	99.29	98.75	99.40	97.92	93.89	95.12	97.13	97.16	98.48	82.69	89.89	86.74	87.88	77.02	91.16	85.44	93.78	88.18	94.59	88.49	95.47	86.95	87.29	78.71	89.01	85.62	91.13	86.52	91.84	5.32	0.416637	0.728056
N	alternative_acceptor	ARAP1	chr11	-	chr11:72408687-72408955	chr11:72408695-72408955		chr11:72408687-72408694	chr11:72408686-72408687		100.00	100.00	98.28	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	AGTRAP	chr1	+	chr1:11808647-11810133				chr1:11808646-11808647;chr1:11810133-11810134		13.33	3.23	15.00	NA	17.65	15.79	18.18	10.00	23.53	NA	0.00	NA	7.69	14.29	12.20	9.09	0.00	NA	14.29	17.24	15.22	NA	12.00	23.08	18.18	21.15	21.28	23.08	15.79	21.74	16.13	14.71	6.25	11.11	20.00	12.90	10.99	15.21	4.22	0.395764	1.000000
N	alternative_last_exon	RP11-580I16.2	chr17	-	chr17:45701433-45713877,chr17:45711531-45713877;chr17:45703994-45713877;chr17:45699454-45713877	chr17:45681485-45713877	chr17:45703372-45703993;chr17:45699208-45699453	chr17:45681226-45681484			28.57	4.00	30.00	7.14	11.11	0.00	34.62	70.00	42.86	14.29	25.00	NA	28.57	29.17	60.00	50.00	23.08	NA	4.55	31.25	9.09	25.00	17.65	NA	0.00	27.27	41.67	30.00	26.67	11.11	27.27	40.00	4.35	26.67	29.17	61.11	4.45	28.87	24.42	0.032306	0.218505
N	alternative_acceptor	TNFRSF10B	chr8	-	chr8:22880468-22881700;chr8:22881447-22881700	chr8:22880498-22881700		chr8:22880468-22880497;chr8:22880498-22881446	chr8:22880467-22880468;chr8:22880497-22880498		NA	100.00	98.21	NA	NA	100.00	90.91	100.00	98.15	92.86	100.00	100.00	94.59	100.00	100.00	91.84	97.14	100.00	NA	100.00	100.00	100.00	100.00	97.44	NA	NA	100.00	NA	NA	100.00	100.00	98.00	100.00	97.83	97.44	98.36	97.30	100.00	2.70	0.201547	0.668038
K	alternative_acceptor	C17orf62	chr17	-	chr17:80403833-80404498;chr17:80403837-80404498	chr17:80403757-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		1.30	0.00	1.20	NA	5.88	NA	0.00	1.37	2.17	0.00	3.85	5.88	6.12	1.69	4.12	0.00	0.00	0.00	0.00	4.00	3.70	NA	7.14	12.50	9.09	2.00	6.58	0.00	4.55	8.33	11.54	1.79	12.50	7.69	4.17	4.76	3.06	1.84	-1.22	0.733347	0.901372
N	jcn_only_AA	HAX1	chr1	+	chr1:154245253-154245817;chr1:154245253-154245955	chr1:154245253-154245811		chr1:154245812-154245817;chr1:154245818-154245955	chr1:154245817-154245818;chr1:154245955-154245956		89.29	95.00	88.24	83.33	91.89	NA	91.38	93.24	90.00	80.77	85.00	86.96	90.48	91.94	92.00	87.80	88.46	83.33	NA	91.84	84.44	87.50	95.24	85.71	NA	94.12	93.65	91.67	84.21	83.33	87.80	95.45	100.00	92.50	94.55	88.89	93.19	91.89	-1.30	0.293304	0.663989
K	intron_retention		chr5	+	chr5:64956725-64957876				chr5:64956724-64956725;chr5:64957876-64957877		0.00	NA	3.33	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	5.26	0.00	NA	10.53	13.64	NA	13.33	NA	5.88	5.26	0.00	16.67	12.50	8.33	0.00	0.00	0.00	0.485354	1.000000
K	intron_retention	ODF3B	chr22	-	chr22:50969282-50969365				chr22:50969281-50969282;chr22:50969365-50969366		12.73	18.75	20.59	57.14	35.00	44.62	17.65	13.56	28.12	NA	14.29	0.00	10.00	19.10	20.29	37.50	6.67	21.43	27.66	16.05	18.45	54.55	34.48	35.71	16.36	10.94	10.34	41.94	30.77	30.00	17.78	14.74	21.62	37.50	36.84	31.48	18.20	14.80	-3.39	0.649172	1.000000
K	intron_retention	SFPQ	chr1	-	chr1:35643638-35652601				chr1:35643637-35643638;chr1:35652601-35652602		17.65	7.89	13.64	23.19	27.14	12.98	0.00	NA	0.00	13.33	15.38	NA	16.67	0.00	5.00	17.39	13.33	NA	7.02	10.34	12.50	27.91	30.61	21.95	5.43	12.50	12.20	25.00	29.03	10.20	5.00	12.16	7.89	35.14	41.18	26.53	7.46	10.34	2.88	0.645586	1.000000
N	jcn_only_AA	MOB2	chr11	-	chr11:1492646-1501622	chr11:1492650-1501622		chr11:1492646-1492649	chr11:1492645-1492646		100.00	89.58	93.02	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	96.77	97.06	90.91	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	96.00	97.50	100.00	95.00	91.30	100.00	100.00	98.61	100.00	100.00	0.00	0.176840	0.663989
N	alternative_acceptor	TMEM39B	chr1	+	chr1:16053564-16054573	chr1:16053564-16053686		chr1:16053687-16054573	chr1:16054573-16054574		97.59	100.00	96.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	97.62	93.33	100.00	100.00	95.92	100.00	100.00	97.22	100.00	100.00	98.13	96.67	98.37	100.00	98.80	-1.20	0.638481	0.862563
K	cassette	ZFAS1	chr20	+	chr20:47897108-47905581	chr20:47897108-47897439;chr20:47897502-47905581		chr20:47897440-47897501			59.60	56.69	60.17	58.01	55.96	64.53	50.00	68.00	69.11	42.74	46.15	39.18	51.39	70.91	72.28	62.50	53.47	52.46	49.14	52.38	48.70	61.17	53.51	63.11	55.22	70.68	62.10	64.04	57.94	62.99	61.06	58.86	51.91	62.89	46.48	60.90	51.65	64.53	12.88	0.010875	0.314700
N	jcn_only_AD	SRRM2	chr16	+	chr16:2820211-2820352;chr16:2820229-2820352	chr16:2819286-2820352		chr16:2819286-2820210;chr16:2820211-2820228	chr16:2819285-2819286;chr16:2820210-2820211		96.30	98.12	98.62	100.00	99.36	100.00	100.00	100.00	95.51	98.55	97.56	96.55	100.00	100.00	100.00	100.00	100.00	100.00	99.03	100.00	97.41	100.00	100.00	100.00	100.00	95.24	98.47	100.00	95.50	91.18	98.08	98.31	99.26	100.00	97.32	96.55	99.63	99.04	-0.59	0.258991	0.657607
N	cassette	RWDD1	chr6	+	chr6:116893642-116901457;chr6:116894149-116901457;chr6:116892819-116901457	chr6:116893642-116895220,chr6:116892819-116895220,chr6:116894149-116895220;chr6:116895335-116901457		chr6:116895221-116895334			8.70	7.41	13.33	9.09	11.76	NA	27.27	29.41	21.43	14.52	16.67	20.83	20.93	13.33	23.53	14.29	18.64	20.00	15.38	8.00	17.24	5.00	20.45	12.82	NA	13.64	20.00	14.81	18.18	17.14	4.76	7.69	13.33	17.14	18.92	21.82	15.38	11.02	-4.37	0.448968	0.750082
K	intron_retention	HDLBP	chr2	-	chr2:242169592-242173267				chr2:242169591-242169592;chr2:242173267-242173268		100.00	100.00	87.50	95.00	89.47	95.24	91.67	100.00	89.47	87.50	96.00	91.18	85.71	85.00	77.78	91.18	86.96	100.00	88.00	100.00	87.10	95.83	94.29	85.19	100.00	95.00	91.67	94.74	91.67	95.65	90.91	91.43	85.19	93.02	95.00	93.75	89.84	97.50	7.66	0.615189	1.000000
N	cassette	C19orf66	chr19	+	chr19:10202030-10202745	chr19:10202030-10202151;chr19:10202307-10202745		chr19:10202152-10202306			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.32	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	92.42	100.00	100.00	100.00	98.73	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	CYTH4	chr22	+	chr22:37705365-37707028;chr22:37706861-37707028	chr22:37706074-37707028		chr22:37705365-37706073;chr22:37706074-37706860	chr22:37705364-37705365;chr22:37706073-37706074		2.45	4.71	2.12	NA	0.00	NA	0.58	0.40	0.42	0.83	0.56	0.00	0.87	0.35	1.01	1.35	0.49	0.00	4.76	1.35	1.22	2.22	1.34	1.69	5.88	2.06	2.53	1.47	1.94	0.81	1.01	2.28	3.33	1.75	1.01	0.89	4.02	1.18	-2.84	0.069822	0.453728
N	intron_retention		chr19	+	chr19:55148074-55179214				chr19:55148073-55148074;chr19:55179214-55179215		78.71	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention		chr17	+	chr17:7464135-7464315				chr17:7464134-7464135;chr17:7464315-7464316		98.28	100.00	92.86	95.24	96.20	100.00	94.67	91.74	100.00	96.25	97.78	97.22	95.71	94.90	100.00	91.74	93.63	94.19	94.87	96.63	94.74	90.00	96.04	93.75	100.00	91.67	100.00	92.68	96.21	94.83	100.00	95.45	92.73	93.06	95.89	91.76	95.29	95.77	0.48	0.931330	1.000000
K	jcn_only_AD	MRPL28	chr16	-	chr16:420226-420443;chr16:420226-420484	chr16:420226-420498		chr16:420444-420484;chr16:420485-420498	chr16:420484-420485;chr16:420498-420499		86.67	100.00	100.00	NA	NA	NA	100.00	100.00	90.48	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.380475	0.657607
N	jcn_only_AD	AATK,MIF4GD	chr17	-	chr17:73263049-73263618;chr17:73263049-73263711	chr17:73263049-73263531		chr17:73263532-73263618;chr17:73263619-73263711	chr17:73263618-73263619;chr17:73263711-73263712		0.00	0.00	0.00	NA	5.56	NA	2.86	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	0.00	NA	7.32	NA	0.00	NA	9.52	NA	0.00	0.00	0.00	4.76	6.45	NA	7.14	0.00	1.43	0.00	-1.43	0.100288	0.639657
K	jcn_only_AD	MRPL51	chr12	-	chr12:6602139-6602624;chr12:6602139-6602882;chr12:6602139-6602839	chr12:6602139-6602223		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		86.21	84.00	85.23	84.51	84.53	73.61	84.83	93.48	89.19	79.25	83.03	75.76	81.04	91.07	91.67	95.02	86.89	91.14	90.91	93.58	91.97	97.95	93.59	95.92	85.22	86.05	88.36	93.84	90.48	93.79	92.77	90.80	86.59	85.98	91.24	90.00	85.03	91.92	6.89	0.026582	0.374446
N	alternative_acceptor	ARAP1	chr11	-	chr11:72423367-72423482;chr11:72423343-72423482	chr11:72423385-72423482		chr11:72423343-72423366;chr11:72423367-72423384	chr11:72423342-72423343;chr11:72423366-72423367		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	98.18	NA	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor		chr16	+	chr16:30783295-30783393;chr16:30783295-30783389	chr16:30783295-30783409		chr16:30783390-30783393;chr16:30783394-30783409	chr16:30783393-30783394;chr16:30783409-30783410		94.00	100.00	100.00	NA	96.00	NA	100.00	100.00	100.00	96.97	96.72	100.00	98.36	100.00	98.15	97.30	100.00	100.00	100.00	100.00	100.00	100.00	94.55	100.00	100.00	100.00	98.08	100.00	97.56	100.00	98.00	98.86	100.00	97.62	94.23	100.00	100.00	100.00	0.00	0.342916	0.709013
K	intron_retention	OGFR	chr20	+	chr20:61444949-61445195				chr20:61444948-61444949;chr20:61445195-61445196		97.65	96.91	95.24	95.90	93.37	94.97	100.00	97.63	97.27	100.00	100.00	100.00	100.00	96.52	94.87	96.26	100.00	97.70	92.88	92.17	94.06	96.51	100.00	97.58	94.13	96.04	100.00	100.00	96.36	95.50	92.64	93.72	91.51	96.94	100.00	96.40	95.52	96.28	0.76	0.991677	1.000000
K	jcn_only_AD	RPL21	chr13	+	chr13:27825794-27827901;chr13:27825988-27827901;chr13:27825837-27827901	chr13:27825723-27827901		chr13:27825723-27825793;chr13:27825794-27825836;chr13:27825837-27825987	chr13:27825722-27825723;chr13:27825793-27825794;chr13:27825836-27825837		98.00	99.36	97.53	97.82	98.49	98.16	98.32	97.17	96.40	97.75	98.73	97.49	98.93	96.84	96.65	97.66	97.77	97.64	97.44	93.07	96.50	96.71	98.16	97.80	100.00	96.77	98.40	98.56	98.75	98.92	93.67	98.19	97.78	98.40	97.47	97.32	98.62	96.81	-1.82	0.020634	0.339989
K	jcn_only_AA	CIZ1	chr9	-	chr9:130943079-130947825	chr9:130943094-130947825		chr9:130943079-130943093	chr9:130943078-130943079		100.00	100.00	95.24	NA	NA	NA	87.50	100.00	97.14	91.30	83.72	93.75	85.37	95.45	94.44	83.87	91.38	85.71	NA	94.12	NA	NA	90.91	100.00	100.00	100.00	97.14	93.33	90.91	NA	NA	93.33	NA	92.00	100.00	95.45	93.75	100.00	6.25	0.326293	0.663989
K	intron_retention	HNRNPL	chr19	-	chr19:39331017-39331127				chr19:39331016-39331017;chr19:39331127-39331128		8.11	2.63	9.16	10.34	7.25	NA	3.11	2.56	3.33	4.29	5.19	4.48	3.72	4.82	5.77	1.16	3.51	3.39	7.69	5.43	4.92	10.84	10.68	8.70	7.14	5.66	5.21	10.00	8.42	7.14	9.72	10.29	13.89	8.33	9.29	10.34	5.43	5.54	0.12	0.672921	1.000000
N	jcn_only_AA	TRIM8	chr10	+	chr10:104416143-104417679	chr10:104416143-104416503		chr10:104416504-104417679	chr10:104417679-104417680		100.00	100.00	100.00	NA	95.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	cassette	RPAIN	chr17	+	chr17:5326150-5335861;chr17:5329392-5335861;chr17:5326150-5331390;chr17:5329403-5335861;chr17:5329403-5331390	chr17:5329392-5329555,chr17:5326150-5329555,chr17:5329403-5329555;chr17:5329620-5335861,chr17:5329620-5331390		chr17:5329556-5329619			50.00	77.27	67.39	66.67	67.65	64.71	73.33	NA	82.14	40.00	66.67	NA	68.18	NA	64.52	85.71	71.43	NA	57.45	53.33	67.65	61.11	69.70	NA	60.00	58.33	62.50	76.92	74.07	50.00	44.44	57.45	45.45	66.67	64.00	73.91	64.09	51.66	-12.43	0.064121	0.621473
K	alternative_acceptor	ZBTB17	chr1	-	chr1:16269234-16269558	chr1:16269397-16269558		chr1:16269234-16269396	chr1:16269233-16269234		3.03	0.00	3.61	5.00	5.88	3.70	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	3.85	5.26	2.70	5.26	2.94	1.79	0.00	1.37	4.11	3.64	0.00	2.00	6.41	2.41	3.23	5.13	3.03	5.88	0.00	2.20	2.20	0.292294	0.709013
K	cassette	MRPL32	chr7	+	chr7:42974736-42976920	chr7:42974736-42976762;chr7:42976841-42976920		chr7:42976763-42976840			0.00	4.35	0.00	1.96	1.92	4.76	0.00	3.45	2.67	1.30	0.00	3.80	0.00	0.00	1.94	0.96	0.00	1.92	0.00	3.12	2.08	2.82	2.44	5.81	0.00	12.50	4.65	2.90	2.44	5.63	0.00	0.00	0.00	1.56	2.04	2.63	0.00	1.56	1.56	0.286103	0.709176
K	intron_retention	DCAF11,RP11-468E2.6	chr14	+	chr14:24590727-24592179				chr14:24590726-24590727;chr14:24592179-24592180		8.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	3.03	NA	3.57	0.00	2.56	0.00	0.00	0.00	0.594508	1.000000
N	cassette	RNF10	chr12	+	chr12:121003333-121008993;chr12:121003327-121008993	chr12:121003333-121004627,chr12:121003327-121004627;chr12:121004784-121008993		chr12:121004628-121004783			100.00	100.00	100.00	100.00	98.73	100.00	100.00	100.00	98.63	100.00	97.30	98.31	100.00	98.46	100.00	100.00	100.00	100.00	93.62	96.97	100.00	98.15	96.39	100.00	100.00	100.00	99.03	98.25	100.00	98.75	96.39	97.00	95.74	98.02	97.62	97.69	100.00	99.23	-0.77	0.766473	0.927321
K	cassette	PARL	chr3	-	chr3:183558429-183562018	chr3:183558429-183560085;chr3:183560236-183562018		chr3:183560086-183560235			74.29	81.15	81.48	62.07	75.81	61.11	78.48	83.33	91.30	78.26	69.57	81.25	82.19	81.25	86.96	70.45	55.17	73.33	75.00	69.57	70.45	78.79	77.92	80.00	59.18	81.82	76.12	73.33	73.91	80.65	81.82	75.00	64.81	81.58	79.59	82.05	76.74	81.53	4.79	0.274212	0.709176
K	intron_retention		chr19	+	chr19:3575659-3576258				chr19:3575658-3575659;chr19:3576258-3576259		0.00	6.06	3.12	0.00	3.64	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	1.19	4.35	4.23	0.00	5.26	2.78	2.63	0.00	0.00	0.00	3.08	4.17	5.00	2.94	0.00	0.00	2.50	0.00	-2.50	0.804685	1.000000
K	intron_retention	RBMX2	chrX	+	chrX:129546664-129546668				chrX:129546663-129546664;chrX:129546668-129546669		100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.431588	1.000000
K	intron_retention	GLIPR1	chr12	+	chr12:75889443-75892473				chr12:75889442-75889443;chr12:75892473-75892474		27.78	0.00	45.45	0.92	2.33	1.86	0.58	7.14	35.71	1.29	1.46	1.06	0.92	10.00	NA	1.85	2.20	1.68	4.35	NA	2.41	5.41	5.81	4.42	0.00	6.67	NA	1.67	1.12	2.15	10.00	NA	1.52	3.80	6.25	4.85	0.75	10.00	9.25	0.411021	1.000000
N	cassette	DGCR14	chr22	-	chr22:19127243-19130050	chr22:19127243-19127367;chr22:19127538-19130050		chr22:19127368-19127537			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	89.47	92.86	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	PCGF1	chr2	-	chr2:74733380-74733858				chr2:74733379-74733380;chr2:74733858-74733859		15.79	0.00	17.24	NA	3.57	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	11.11	16.67	0.00	0.00	9.09	NA	10.00	NA	18.52	NA	10.00	0.00	8.33	17.24	0.00	0.00	20.00	10.00	0.00	12.06	12.06	0.418171	1.000000
K	coord_cassette	PARL	chr3	-	chr3:183547498-183558357	chr3:183547498-183551279;chr3:183551378-183551511;chr3:183551614-183558357		chr3:183551280-183551377;chr3:183551512-183551613			100.00	98.49	100.00	97.62	100.00	100.00	98.65	NA	100.00	97.06	98.36	100.00	100.00	100.00	100.00	94.12	98.51	100.00	98.61	100.00	98.65	100.00	98.72	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.33	100.00	0.67	0.076076	0.643829
K	intron_retention	FTSJ3	chr17	-	chr17:61897799-61898198				chr17:61897798-61897799;chr17:61898198-61898199		0.00	0.00	9.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	3.33	0.00	9.09	0.00	0.00	6.25	0.00	0.00	2.86	0.00	3.57	0.00	3.03	3.57	0.00	4.17	3.12	0.00	0.00	0.00	0.00	0.601311	1.000000
K	intron_retention	GLIPR1	chr12	+	chr12:75892501-75892603				chr12:75892500-75892501;chr12:75892603-75892604		38.10	4.21	58.33	1.09	6.03	2.13	1.71	22.22	58.82	2.04	2.76	1.69	2.05	25.00	81.82	5.26	2.65	3.70	8.89	NA	5.33	12.07	10.45	8.33	0.00	18.75	NA	3.74	4.17	3.12	30.00	69.23	1.64	10.61	13.95	9.68	1.88	25.00	23.12	0.002105	0.920759
N	cassette	FCER1G	chr1	+	chr1:161185161-161188492;chr1:161185161-161188030	chr1:161185161-161187775;chr1:161187868-161188030,chr1:161187868-161188492		chr1:161187776-161187867			89.21	87.66	88.64	88.01	87.97	86.22	93.25	94.05	92.24	92.00	93.22	94.11	93.16	93.32	92.19	93.33	92.46	93.79	89.14	92.39	86.60	90.29	89.76	90.94	83.65	92.19	88.96	90.57	89.96	91.33	92.53	90.90	85.99	87.53	87.69	89.45	88.40	92.46	4.06	0.083997	0.641134
K	intron_retention	RARS2	chr6	-	chr6:88227983-88228347				chr6:88227982-88227983;chr6:88228347-88228348		8.70	6.45	2.78	0.00	4.65	4.55	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.00	0.00	0.00	2.50	4.17	0.00	8.70	0.00	0.00	0.00	0.00	3.33	2.27	0.00	2.70	2.38	2.38	0.00	4.00	4.00	0.921792	1.000000
K	cassette	RBPJ	chr4	+	chr4:26431676-26432313	chr4:26431676-26432040;chr4:26432145-26432313		chr4:26432041-26432144			100.00	96.43	91.18	100.00	96.77	NA	100.00	100.00	100.00	93.10	96.15	NA	90.62	100.00	90.00	88.89	100.00	NA	90.91	91.30	100.00	76.92	88.46	NA	100.00	NA	92.59	100.00	95.45	NA	80.00	83.33	96.15	100.00	91.30	NA	96.29	100.00	3.71	0.752283	0.921203
K	intron_retention	WDR91	chr7	-	chr7:134873298-134874095				chr7:134873297-134873298;chr7:134874095-134874096		0.00	0.00	6.25	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	2.86	NA	0.00	0.00	0.00	NA	2.22	NA	4.88	0.00	0.00	0.00	2.94	NA	0.00	0.00	2.50	0.00	4.62	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	NISCH	chr3	+	chr3:52512299-52512464;chr3:52512299-52512390	chr3:52512299-52512388		chr3:52512389-52512390;chr3:52512391-52512464	chr3:52512390-52512391;chr3:52512464-52512465		0.00	0.00	4.76	NA	NA	NA	6.38	0.00	0.00	NA	0.00	NA	4.55	11.76	0.00	0.00	0.00	NA	NA	0.00	NA	NA	14.71	NA	41.18	13.33	6.67	NA	13.64	NA	NA	10.00	NA	8.33	13.64	0.00	5.46	0.00	-5.46	0.470890	0.730736
N	alternative_donor	IL10RA	chr11	+	chr11:117864789-117866303;chr11:117865502-117866303	chr11:117864865-117866303		chr11:117864789-117864864;chr11:117864865-117865501	chr11:117864788-117864789;chr11:117864864-117864865		96.46	85.71	94.55	NA	NA	NA	98.47	98.79	99.33	100.00	98.78	99.23	96.84	98.57	98.09	99.42	98.82	99.03	NA	97.10	100.00	96.67	97.56	95.83	59.09	96.62	95.54	98.11	96.77	99.21	96.61	93.60	NA	95.10	94.52	95.00	91.28	96.86	5.58	0.268414	0.644832
N	cassette	RIC8A	chr11	+	chr11:211350-212614	chr11:211350-212415;chr11:212512-212614		chr11:212416-212511			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	C2CD2L	chr11	+	chr11:118984423-118984564	chr11:118984423-118984561		chr11:118984562-118984564	chr11:118984564-118984565		0.00	30.77	12.50	NA	NA	NA	14.29	20.00	10.00	16.67	17.39	NA	11.43	8.70	14.29	11.11	15.15	NA	NA	NA	NA	NA	16.67	NA	NA	0.00	7.69	NA	NA	NA	NA	18.75	6.67	NA	13.33	NA	12.86	4.35	-8.51	0.268744	0.709013
N	jcn_only_AD	NAGK	chr2	+	chr2:71302737-71303733;chr2:71302741-71303733	chr2:71302773-71303733		chr2:71302737-71302740;chr2:71302741-71302772	chr2:71302736-71302737;chr2:71302740-71302741		93.40	97.39	95.38	93.75	95.81	95.10	94.77	95.45	98.51	95.35	96.84	98.00	96.44	94.74	96.23	93.71	95.12	97.56	93.70	89.64	93.51	96.30	94.76	92.71	95.67	94.06	96.51	96.23	96.86	97.27	89.21	91.04	93.22	95.37	95.98	98.16	95.22	93.73	-1.49	0.089429	0.632469
K	intron_retention	EML3	chr11	-	chr11:62376278-62376433				chr11:62376277-62376278;chr11:62376433-62376434		15.38	0.00	15.22	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	5.88	0.00	7.14	10.34	15.38	26.67	5.00	14.71	0.00	4.17	0.00	NA	12.50	0.00	11.54	4.35	23.08	0.00	5.00	5.00	0.843084	1.000000
K	intron_retention	SIPA1	chr11	+	chr11:65405654-65408301				chr11:65405653-65405654;chr11:65408301-65408302		15.15	33.33	30.19	NA	NA	NA	3.12	0.00	0.00	NA	0.00	0.00	5.26	3.03	3.45	4.76	10.34	NA	NA	11.11	NA	NA	7.69	NA	31.58	16.67	26.83	NA	17.65	NA	13.33	8.70	NA	NA	16.67	40.00	18.42	12.22	-6.20	0.660675	1.000000
K	intron_retention	ATXN2L	chr16	+	chr16:28847444-28848071				chr16:28847443-28847444;chr16:28848071-28848072		96.23	88.46	89.47	84.85	87.18	79.31	78.79	83.33	73.91	78.79	81.08	71.43	87.18	80.00	78.18	85.29	80.00	64.29	80.00	94.12	82.35	92.86	94.00	100.00	90.70	82.93	92.41	84.85	89.36	93.10	91.67	93.33	80.00	84.09	92.31	91.07	83.59	87.50	3.91	0.989391	1.000000
K	jcn_only_AA	CDV3,DHX30	chr3	+	chr3:133305567-133306002;chr3:133305567-133306739;chr3:133305567-133306005	chr3:133305567-133307196		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		6.45	0.00	9.57	0.00	2.22	0.00	15.12	16.57	15.27	10.06	10.96	14.58	15.43	14.04	13.73	18.58	5.51	11.15	0.00	13.85	0.00	10.26	12.50	13.90	0.00	6.82	10.71	10.84	7.84	6.52	4.84	9.59	0.00	8.96	6.86	11.18	0.00	10.34	10.34	0.196275	0.663989
N	jcn_only_AD	TNFRSF14	chr1	+	chr1:2487472-2488023;chr1:2485752-2488023;chr1:2487290-2488023;chr1:2487701-2488023	chr1:2487692-2488023		chr1:2485752-2487289;chr1:2487290-2487471;chr1:2487472-2487691;chr1:2487692-2487700	chr1:2485751-2485752;chr1:2487289-2487290;chr1:2487471-2487472;chr1:2487691-2487692		61.11	79.17	84.62	58.33	79.41	NA	60.00	NA	NA	70.00	73.53	80.00	76.09	69.23	NA	81.13	72.73	90.00	92.86	76.92	62.50	92.11	76.12	92.86	100.00	NA	70.00	76.60	68.12	77.42	70.00	NA	NA	80.56	90.62	72.22	79.17	69.62	-9.55	0.163598	0.657607
N	alternative_acceptor	HADHA	chr2	-	chr2:26414265-26414351;chr2:26414283-26414351	chr2:26414230-26414351		chr2:26414230-26414264;chr2:26414265-26414282	chr2:26414229-26414230;chr2:26414264-26414265		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.38	0.00	2.40	0.00	0.00	0.00	0.00	0.00	0.00	0.579325	0.839743
K	cassette	HNRNPM	chr19	+	chr19:8536312-8539050	chr19:8536312-8538547;chr19:8538593-8539050		chr19:8538548-8538592			90.20	89.47	89.08	94.34	93.10	100.00	95.65	92.31	95.00	97.70	95.43	95.99	97.22	93.65	92.75	95.81	97.47	96.64	96.30	88.61	88.46	95.18	92.31	94.01	NA	94.12	92.63	94.70	96.46	95.35	81.82	83.05	80.00	89.26	91.95	90.99	95.65	91.25	-4.40	0.680206	0.883836
N	jcn_only_AA	CCDC88A	chr2	-	chr2:55518301-55518811;chr2:55506167-55518811	chr2:55515492-55518811		chr2:55506167-55515491;chr2:55515492-55518300	chr2:55506166-55506167;chr2:55515491-55515492		53.12	72.34	34.78	64.00	64.71	55.56	21.67	33.93	33.33	30.23	26.73	28.00	32.86	37.50	23.64	37.14	20.41	38.71	65.79	40.82	60.38	58.62	47.76	41.67	59.46	40.30	52.17	58.82	53.85	50.00	35.00	45.24	36.00	45.45	39.74	54.17	47.73	38.90	-8.83	0.405068	0.677546
N	jcn_only_AD	NTAN1	chr16	-	chr16:15138265-15140213;chr16:15138265-15141298	chr16:15138265-15141274		chr16:15140214-15141274;chr16:15141275-15141298	chr16:15141274-15141275;chr16:15141298-15141299		8.86	0.00	0.00	4.76	4.67	6.67	2.03	4.23	5.41	1.98	2.34	3.30	0.00	5.48	0.00	5.19	2.22	3.08	4.35	1.92	5.00	2.17	4.84	4.84	0.00	7.25	2.63	5.66	2.86	0.00	11.11	8.82	18.52	4.90	5.00	4.46	1.01	6.37	5.35	0.497807	0.739643
K	intron_retention	GSS	chr20	-	chr20:33517394-33519138				chr20:33517393-33517394;chr20:33519138-33519139		0.00	6.90	2.27	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	2.44	4.76	3.85	0.00	0.00	4.35	0.00	9.09	2.22	0.00	7.41	2.70	3.70	3.85	8.57	9.09	0.00	2.00	2.00	0.492519	1.000000
N	alternative_acceptor	EDC4	chr16	+	chr16:67917635-67917858;chr16:67917635-67917750	chr16:67917635-67917833		chr16:67917751-67917833;chr16:67917834-67917858	chr16:67917833-67917834;chr16:67917858-67917859		2.08	3.09	1.45	1.52	1.79	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.20	3.85	2.67	3.85	1.56	5.00	0.00	0.00	1.25	0.00	1.75	0.00	7.89	4.88	2.86	2.94	1.82	2.38	1.10	1.04	-0.06	0.528365	0.811130
K	cassette	TPM3	chr1	-	chr1:154130198-154142875	chr1:154130198-154141780;chr1:154141860-154142875		chr1:154141781-154141859			3.18	5.10	2.50	5.45	2.52	15.15	2.68	3.20	1.99	2.93	2.95	3.33	3.28	3.61	1.92	3.81	2.61	4.17	2.13	2.87	2.73	3.29	2.79	4.48	6.25	3.36	2.40	4.32	3.55	5.54	2.27	1.43	3.45	2.14	2.73	2.91	3.37	3.19	-0.17	0.312237	0.709176
K	cassette	RBCK1	chr20	+	chr20:390670-398169	chr20:390670-397863;chr20:397987-398169		chr20:397864-397986			2.38	0.00	3.12	NA	NA	NA	2.70	3.23	1.41	NA	0.00	0.00	5.56	2.41	3.61	0.00	0.00	0.00	NA	1.64	0.00	NA	0.00	2.94	0.00	2.53	3.70	0.00	0.00	2.70	0.00	0.00	0.00	0.00	4.35	1.61	0.00	2.40	2.40	0.763343	0.925284
K	alternative_acceptor	PITRM1	chr10	-	chr10:3185924-3186483;chr10:3185694-3186483	chr10:3185968-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		5.56	0.00	4.00	15.00	7.69	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	1.33	1.85	0.00	NA	0.00	0.00	7.84	13.33	11.76	NA	0.00	12.50	4.44	3.33	1.47	3.12	8.33	8.33	10.53	5.26	9.38	0.00	0.00	0.00	0.794629	0.923537
K	jcn_only_AA	ARL6IP4	chr12	+	chr12:123465847-123466202;chr12:123465847-123466141	chr12:123465847-123466117		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		36.11	38.13	37.50	41.30	31.50	30.16	35.09	43.33	46.58	28.36	38.89	27.66	37.86	40.00	37.93	32.91	33.33	31.71	25.81	33.33	28.00	36.00	34.44	42.31	21.32	31.25	44.44	30.95	21.37	23.53	17.65	33.33	28.95	24.39	31.82	41.67	32.02	34.72	2.70	0.613013	0.823263
K	intron_retention		chr19	+	chr19:1271246-1271327				chr19:1271245-1271246;chr19:1271327-1271328		7.31	7.25	6.50	0.00	1.26	5.63	0.49	0.79	0.62	0.00	0.46	0.54	0.86	1.50	1.44	0.28	0.45	0.00	3.87	4.76	4.97	4.98	2.50	7.08	11.52	2.71	4.90	2.22	2.44	2.55	11.47	10.83	10.20	3.04	5.32	6.19	5.56	3.73	-1.83	0.948061	1.000000
N	alternative_acceptor		chr6	+	chr6:139350013-139354885;chr6:139350013-139355295	chr6:139350013-139355291		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		89.87	88.52	94.34	100.00	87.23	90.00	91.67	97.10	95.00	96.43	94.55	100.00	93.63	95.24	96.15	96.43	92.36	94.79	92.31	91.58	92.06	100.00	100.00	100.00	100.00	93.55	94.57	89.74	94.03	95.35	88.42	100.00	95.12	94.37	94.67	97.22	92.97	92.56	-0.41	0.668086	0.880186
K	intron_retention	CTSH	chr15	-	chr15:79224787-79237232				chr15:79224786-79224787;chr15:79237232-79237233		18.52	9.68	25.42	NA	12.90	NA	15.38	16.22	17.14	3.57	14.63	0.00	14.29	20.59	16.67	0.00	7.41	0.00	12.50	28.12	20.00	18.18	31.25	8.33	0.00	29.31	16.18	37.50	29.41	25.00	21.43	17.07	10.00	25.00	30.56	9.52	11.25	21.01	9.76	0.940472	1.000000
N	jcn_only_AA		chr12	+	chr12:6570105-6570289;chr12:6570105-6570324;chr12:6570105-6570436	chr12:6570105-6571199		chr12:6570290-6570324;chr12:6570325-6570436;chr12:6570437-6571199	chr12:6570324-6570325;chr12:6570436-6570437;chr12:6571199-6571200		100.00	100.00	100.00	100.00	97.37	100.00	94.12	100.00	85.37	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.04	100.00	100.00	98.48	100.00	100.00	0.00	0.288753	0.663989
N	alternative_last_exon		chr2	+	chr2:8822644-8823814	chr2:8822644-8822972	chr2:8823815-8824583	chr2:8822973-8823137			98.59	98.18	98.92	98.18	98.92	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.93	100.00	99.64	92.31	98.04	97.62	100.00	100.00	100.00	76.92	100.00	97.83	100.00	99.05	99.54	98.73	98.81	92.59	99.11	99.12	100.00	95.39	99.37	3.98	0.160704	0.371316
K	intron_retention	SPSB3	chr16	-	chr16:1827874-1827946				chr16:1827873-1827874;chr16:1827946-1827947		22.86	26.92	33.33	8.33	7.89	0.00	8.00	6.25	4.00	0.00	6.45	7.69	6.67	13.33	8.57	7.14	4.17	0.00	13.51	35.00	18.75	16.67	20.69	NA	20.83	21.43	27.03	0.00	14.29	7.69	37.50	20.97	27.50	30.77	43.75	17.39	17.17	22.14	4.98	0.959193	1.000000
K	intron_retention	CIRBP	chr19	+	chr19:1274444-1274647				chr19:1274443-1274444;chr19:1274647-1274648		100.00	98.63	97.06	97.44	98.28	99.03	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	92.31	100.00	100.00	96.88	90.91	99.38	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	NA	100.00	100.00	99.69	100.00	0.31	0.773340	1.000000
N	cassette	KLC1	chr14	+	chr14:104145883-104166991;chr14:104153549-104166991;chr14:104145883-104159889;chr14:104153549-104159889	chr14:104145883-104158695,chr14:104153549-104158695;chr14:104158763-104159889,chr14:104158763-104166991		chr14:104158696-104158762			40.00	22.22	49.12	40.00	34.29	42.11	31.25	74.29	34.09	57.50	42.50	51.85	38.00	70.69	31.25	44.78	36.21	54.17	25.88	67.65	26.74	70.83	40.74	69.70	13.27	64.44	28.85	35.29	33.85	50.00	71.05	40.68	23.26	62.26	58.97	67.21	24.57	69.17	44.60	0.000154	0.038633
N	alternative_first_exon	SEPT9	chr17	+	chr17:75423284-75478225,chr17:75450079-75478225,chr17:75447061-75478225;chr17:75398786-75478225;chr17:75401223-75478225;chr17:75450446-75478225;chr17:75316431-75478225;chr17:75446869-75478225	chr17:75447611-75478225	chr17:75398141-75398785;chr17:75401159-75401222;chr17:75450075-75450445;chr17:75315597-75316430;chr17:75446819-75446868	chr17:75447326-75447610			0.00	5.88	0.00	0.00	3.85	NA	5.41	0.00	1.79	0.14	0.98	1.14	7.49	0.00	3.23	1.02	2.08	0.80	NA	0.00	0.00	0.82	4.02	1.81	0.00	0.00	0.00	0.00	1.94	0.00	0.00	0.00	0.00	1.67	2.48	1.36	5.41	0.00	-5.41	0.075187	0.223054
K	intron_retention	KLC1	chr14	+	chr14:104145883-104153417				chr14:104145882-104145883;chr14:104153417-104153418		17.39	31.71	36.00	28.57	20.00	13.33	0.00	0.00	0.00	6.90	0.00	0.00	0.00	2.56	3.23	2.56	6.67	0.00	19.51	21.05	11.43	18.75	18.75	25.00	15.79	6.06	28.00	11.11	7.89	10.00	11.54	16.67	18.75	20.00	30.77	29.03	17.27	8.80	-8.47	0.625509	1.000000
K	cassette	PLEKHB2	chr2	+	chr2:131897849-131904209	chr2:131897849-131901980;chr2:131902023-131904209		chr2:131901981-131902022			9.84	5.00	10.38	12.50	21.43	11.11	5.28	6.43	8.12	12.81	8.10	10.54	4.26	5.95	10.26	15.27	8.95	12.23	0.00	11.11	4.76	10.45	5.08	18.09	0.00	9.84	6.76	8.77	5.88	6.25	7.27	8.93	25.00	11.11	8.03	15.08	4.63	8.55	3.92	0.659781	0.874837
N	alternative_acceptor	XPC	chr3	-	chr3:14188880-14189407;chr3:14189280-14189407	chr3:14189333-14189407		chr3:14188880-14189279;chr3:14189280-14189332	chr3:14188879-14188880;chr3:14189279-14189280		3.03	1.96	3.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.88	0.00	4.00	6.90	0.00	0.00	3.33	2.70	0.00	0.00	NA	5.13	3.08	0.00	7.89	3.85	8.00	0.00	3.18	3.18	0.052410	0.570243
K	coord_cassette	INF2	chr14	+	chr14:105181194-105185131	chr14:105181194-105181620;chr14:105181678-105183899;chr14:105183984-105185131		chr14:105181621-105181677;chr14:105183900-105183983			0.00	3.23	NA	0.00	6.67	0.00	0.00	0.00	7.14	13.33	NA	NA	20.00	0.00	10.00	NA	9.09	NA	6.25	NA	2.86	NA	5.56	8.33	18.18	0.00	NA	NA	6.67	0.00	NA	NA	0.00	9.09	5.88	8.70	4.74	0.00	-4.74	0.081988	0.643829
K	intron_retention		chr14	-	chr14:50251723-50251809				chr14:50251722-50251723;chr14:50251809-50251810		5.88	0.00	1.92	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	3.70	0.00	3.45	0.00	0.00	3.70	0.00	6.45	5.56	0.00	2.27	0.00	0.00	2.08	2.22	0.00	0.00	0.00	0.721852	1.000000
K	intron_retention	RSRP1	chr1	-	chr1:25573521-25573799				chr1:25573520-25573521;chr1:25573799-25573800		2.53	0.00	3.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	NA	8.45	0.00	2.86	0.00	0.00	NA	1.72	0.00	0.00	0.00	NA	10.00	9.17	0.00	0.00	0.00	0.00	0.00	2.12	2.12	0.198961	1.000000
K	intron_retention	TOX4	chr14	+	chr14:21963552-21964703				chr14:21963551-21963552;chr14:21964703-21964704		6.06	10.94	11.63	5.26	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	8.51	3.39	7.41	4.00	7.14	3.45	6.25	8.11	3.33	0.00	3.77	2.38	6.38	3.70	8.11	11.11	11.76	3.58	4.22	0.64	0.532872	1.000000
K	intron_retention	ABTB1	chr3	+	chr3:127391925-127393233				chr3:127391924-127391925;chr3:127393233-127393234		3.57	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	4.76	0.00	NA	NA	0.00	NA	NA	0.00	NA	5.26	4.88	6.25	NA	0.00	NA	4.35	0.00	NA	NA	0.00	0.00	0.00	1.78	1.78	0.695504	1.000000
K	intron_retention	PI4KA	chr22	-	chr22:21064286-21064986				chr22:21064285-21064286;chr22:21064986-21064987		4.17	0.00	8.11	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.54	0.00	2.27	0.00	0.00	0.00	2.27	3.45	2.74	0.00	2.63	6.38	1.14	0.00	3.92	1.82	0.00	0.00	0.00	0.568857	1.000000
K	jcn_only_AD	TOM1	chr22	+	chr22:35718013-35719020	chr22:35718031-35719020		chr22:35718013-35718030	chr22:35718012-35718013		98.12	97.22	98.61	95.92	95.00	100.00	100.00	97.11	98.86	96.58	97.89	100.00	94.67	99.25	97.70	93.83	95.73	96.00	100.00	97.50	97.40	94.70	95.16	97.13	100.00	98.43	98.42	95.54	96.77	96.32	98.39	96.43	93.10	94.61	95.65	96.93	98.61	98.25	-0.36	0.638291	0.818639
N	cassette	SF3B3	chr16	+	chr16:70602399-70603908	chr16:70602399-70602945;chr16:70603045-70603908		chr16:70602946-70603044			94.74	93.75	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	97.37	-2.63	0.412758	0.727434
N	coord_cassette	HDAC5	chr17	-	chr17:42161223-42165754	chr17:42161223-42163939;chr17:42164106-42164779;chr17:42165065-42165754		chr17:42163940-42164105;chr17:42164780-42165064			100.00	100.00	100.00	NA	92.31	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	93.33	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	SRA1	chr5	-	chr5:139930755-139931566				chr5:139930754-139930755;chr5:139931566-139931567		8.70	8.79	7.69	5.26	2.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.00	6.25	3.80	0.00	1.22	0.00	4.62	0.00	4.35	0.00	0.00	0.00	5.17	1.11	2.94	1.33	3.00	2.17	3.78	2.58	-1.20	0.792077	1.000000
N	alternative_donor	RPS16	chr19	-	chr19:39924402-39926297;chr19:39924402-39926246;chr19:39924402-39928401	chr19:39924402-39924939		chr19:39924940-39926246;chr19:39926247-39926297;chr19:39926298-39928401	chr19:39926246-39926247;chr19:39926297-39926298;chr19:39928401-39928402		8.00	0.91	11.11	1.41	0.85	0.00	0.00	0.00	2.86	1.20	1.09	1.25	1.03	0.00	3.80	1.92	1.12	1.49	1.06	8.33	1.41	6.38	4.41	6.52	0.00	7.14	2.63	3.45	2.50	2.30	18.92	11.11	1.83	5.77	6.00	5.48	0.97	7.57	6.60	0.079104	0.470724
K	intron_retention		chr11	+	chr11:67052455-67052545				chr11:67052454-67052455;chr11:67052545-67052546		7.76	14.67	9.86	NA	11.11	NA	0.94	0.00	0.00	0.00	4.65	0.00	0.97	4.76	0.00	0.00	4.08	NA	18.92	14.00	6.67	6.25	15.79	6.67	8.11	5.56	10.64	10.00	12.07	NA	14.29	13.39	10.61	3.70	14.00	3.45	9.36	6.66	-2.70	0.930752	1.000000
K	intron_retention		chr19	-	chr19:5587411-5587711				chr19:5587410-5587411;chr19:5587711-5587712		19.61	17.58	27.27	13.89	19.05	12.38	20.00	NA	10.00	13.33	15.00	NA	16.67	NA	NA	11.11	14.29	0.00	22.12	32.26	25.32	25.00	19.54	14.81	25.00	23.33	25.00	15.62	19.57	7.50	36.25	41.49	33.77	35.14	38.89	26.83	21.06	27.79	6.73	0.682661	1.000000
N	jcn_only_AD	SYNGR2	chr17	+	chr17:76167731-76167819;chr17:76167671-76167819	chr17:76167136-76167819					16.44	12.96	13.45	19.44	13.95	22.73	7.26	6.07	6.34	10.23	8.33	10.13	6.38	4.96	8.01	10.39	8.05	9.40	13.33	13.88	10.95	18.18	15.40	16.78	15.56	8.03	14.84	14.58	11.44	9.52	12.20	14.12	23.60	15.23	19.80	16.52	13.14	10.11	-3.03	0.380662	0.657607
N	cassette	PFDN5	chr12	+	chr12:53689424-53690027;chr12:53689424-53691633;chr12:53689424-53691832;chr12:53689424-53690002;chr12:53689424-53691828;chr12:53689424-53690213	chr12:53689424-53689622;chr12:53689726-53690027,chr12:53689726-53690002,chr12:53689726-53691832,chr12:53689726-53691633,chr12:53689726-53691828,chr12:53689726-53690213		chr12:53689623-53689725			43.53	50.66	43.01	57.45	59.31	54.69	77.29	76.56	74.27	76.29	77.45	79.61	79.42	75.69	68.37	74.96	79.18	79.81	42.40	38.12	47.96	48.98	52.40	56.39	60.02	65.30	59.15	78.19	78.53	76.66	31.60	36.20	37.75	54.34	53.42	56.59	55.34	54.41	-0.93	0.801629	0.936947
K	intron_retention	HSPA8	chr11	-	chr11:122930557-122931405				chr11:122930556-122930557;chr11:122931405-122931406		95.60	96.10	96.71	96.30	91.62	NA	96.15	96.15	95.96	96.69	95.93	97.44	96.28	96.39	95.69	95.89	95.84	93.87	93.88	93.37	91.55	93.61	93.04	93.22	100.00	95.21	95.15	92.62	93.14	92.97	90.53	94.34	83.82	95.33	94.38	95.01	96.12	95.41	-0.72	0.966126	1.000000
N	jcn_only_AD	ILKAP	chr2	-	chr2:239102973-239103422;chr2:239102973-239103295	chr2:239102973-239103445		chr2:239103296-239103422;chr2:239103423-239103445	chr2:239103422-239103423;chr2:239103445-239103446		100.00	100.00	86.96	NA	90.00	NA	88.00	90.00	89.47	91.30	88.24	100.00	95.65	91.67	86.96	95.35	100.00	100.00	NA	90.00	NA	89.47	100.00	90.91	NA	NA	79.17	91.67	100.00	100.00	NA	80.00	100.00	83.33	96.00	84.62	97.83	90.84	-6.99	0.450691	0.706163
N	alternative_donor	SMS	chrX	+	chrX:21958992-21985313;chrX:21959486-21985313	chrX:21985164-21985313		chrX:21958992-21959485;chrX:21959486-21985163	chrX:21958991-21958992;chrX:21959485-21959486		0.00	3.85	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.221403	0.595046
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75648722-75648946;chr15:75648791-75648946;chr15:75648780-75648946;chr15:75648815-75648946	chr15:75648848-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		7.14	0.00	0.00	4.00	3.45	2.13	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	1.45	6.67	3.23	0.00	2.27	0.00	3.92	0.00	5.26	5.88	3.45	0.00	0.00	3.57	3.51	4.17	3.23	2.86	0.72	3.33	2.61	0.408758	0.722901
N	alternative_acceptor	ARFGAP1	chr20	+	chr20:61912700-61914137;chr20:61912700-61914170	chr20:61912700-61913456		chr20:61913457-61914137;chr20:61914138-61914170	chr20:61914137-61914138;chr20:61914170-61914171		5.41	8.11	9.09	NA	0.00	NA	3.85	0.00	4.00	2.78	3.33	0.00	2.17	0.00	3.45	2.78	2.78	7.14	NA	4.00	0.00	5.26	6.25	14.29	15.38	4.35	3.23	4.76	5.26	0.00	5.00	3.70	4.55	8.11	6.25	6.90	4.55	4.17	-0.38	0.204479	0.668672
K	jcn_only_AA	ANAPC5	chr12	-	chr12:121756208-121756303;chr12:121756228-121756303	chr12:121756155-121756303		chr12:121756155-121756207;chr12:121756208-121756227	chr12:121756154-121756155;chr12:121756207-121756208		3.45	7.84	4.44	12.50	1.64	NA	2.00	0.00	0.00	3.12	1.79	5.56	4.23	0.00	5.00	2.86	4.48	7.69	8.89	0.00	2.08	4.55	1.19	6.67	0.00	NA	5.41	7.14	4.00	5.88	7.69	5.41	3.70	5.13	5.88	3.12	3.97	0.00	-3.97	0.310669	0.663989
K	jcn_only_AD	RBM17	chr10	+	chr10:6154325-6155470	chr10:6155032-6155470		chr10:6154325-6155031	chr10:6154324-6154325		3.17	13.95	1.69	0.75	0.00	2.50	0.00	1.28	0.00	0.00	1.41	0.00	0.00	0.00	0.81	0.88	0.00	0.00	2.56	4.00	2.88	0.88	4.65	1.19	0.00	2.97	3.70	0.83	5.26	2.83	0.00	1.82	0.00	2.04	2.56	1.59	0.00	2.12	2.12	0.734249	0.861229
K	intron_retention	PRPF3	chr1	+	chr1:150318613-150318883				chr1:150318612-150318613;chr1:150318883-150318884		11.11	6.67	15.00	2.22	2.56	6.67	5.26	2.22	2.67	0.00	0.00	0.00	0.00	1.85	5.26	2.99	5.56	1.30	3.12	9.84	2.86	8.93	4.69	9.72	9.68	9.68	10.00	3.64	2.44	4.76	8.86	10.19	7.14	8.33	11.11	13.54	5.96	9.27	3.30	0.599559	1.000000
K	alternative_donor	LENG8	chr19	+	chr19:54960489-54962466;chr19:54960923-54962466	chr19:54960485-54962466		chr19:54960485-54960488;chr19:54960489-54960922	chr19:54960484-54960485;chr19:54960488-54960489		70.00	100.00	77.50	NA	NA	NA	77.78	71.43	80.00	NA	73.68	NA	86.96	85.71	86.11	88.89	82.61	NA	NA	73.68	NA	NA	80.00	84.62	79.17	78.95	76.19	NA	85.71	NA	NA	79.17	NA	83.33	75.00	82.61	83.06	73.68	-9.38	0.148995	0.563084
K	jcn_only_AA	ADAMDEC1,GSDMD	chr8	+	chr8:144644692-144644839	chr8:144644692-144644831		chr8:144644832-144644839	chr8:144644839-144644840		96.45	100.00	93.75	93.02	95.08	95.82	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	99.02	100.00	96.15	93.75	100.00	96.70	97.46	100.00	91.67	93.75	97.60	95.93	94.12	97.67	100.00	96.43	96.38	96.70	96.59	90.91	100.00	97.37	100.00	96.58	-3.42	0.175570	0.663989
N	alternative_donor		chr9	-	chr9:130578333-130579432;chr9:130578333-130579412;chr9:130578333-130579403;chr9:130578333-130579108	chr9:130578333-130579427		chr9:130579109-130579403;chr9:130579404-130579412;chr9:130579413-130579427;chr9:130579428-130579432	chr9:130579403-130579404;chr9:130579412-130579413;chr9:130579427-130579428;chr9:130579432-130579433		97.48	97.58	95.17	97.10	98.11	100.00	99.55	98.46	98.88	99.39	98.82	100.00	99.00	98.70	95.57	97.85	98.44	100.00	98.89	95.00	97.36	96.23	95.91	84.00	98.85	95.26	96.13	95.83	97.06	94.66	98.00	95.67	98.82	98.98	95.73	90.27	98.87	97.74	-1.13	0.058368	0.421463
N	jcn_only_AA	SCAMP3	chr1	-	chr1:155227126-155227288	chr1:155227178-155227288		chr1:155227126-155227177	chr1:155227125-155227126		100.00	100.00	100.00	100.00	100.00	100.00	98.84	100.00	98.88	98.75	100.00	98.36	100.00	98.33	100.00	98.78	100.00	100.00	100.00	100.00	98.46	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	0.00	0.395122	0.667424
K	alternative_acceptor	GTF2A2	chr15	-	chr15:59942964-59944404	chr15:59942973-59944404		chr15:59942964-59942972	chr15:59942963-59942964		94.87	100.00	96.00	93.75	95.24	NA	100.00	100.00	92.86	93.55	97.37	100.00	97.06	100.00	100.00	94.44	100.00	90.70	100.00	82.61	100.00	92.31	92.00	96.15	NA	100.00	91.84	90.48	94.12	95.00	87.50	100.00	100.00	91.18	95.12	100.00	100.00	97.44	-2.56	0.148706	0.651394
N	cassette	SLC39A13	chr11	+	chr11:47436027-47436610	chr11:47436027-47436327;chr11:47436457-47436610		chr11:47436328-47436456			100.00	90.91	93.02	86.67	100.00	81.82	100.00	100.00	94.44	90.91	94.44	NA	100.00	100.00	100.00	100.00	96.67	NA	85.71	93.94	96.30	100.00	100.00	83.33	NA	100.00	90.48	100.00	100.00	100.00	92.31	92.50	90.91	100.00	91.67	90.62	90.91	100.00	9.09	0.232975	0.709176
N	cassette	SF3A3	chr1	-	chr1:38435408-38445136;chr1:38442626-38444659	chr1:38435408-38444391,chr1:38442626-38444391;chr1:38444500-38445136,chr1:38444500-38444659		chr1:38444392-38444499			100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	98.18	100.00	100.00	96.15	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_donor	SCNM1	chr1	+	chr1:151139481-151139596	chr1:151139499-151139596		chr1:151139481-151139498	chr1:151139480-151139481		100.00	89.83	97.83	100.00	95.45	100.00	100.00	97.37	100.00	100.00	93.62	95.45	97.01	94.87	89.13	100.00	93.44	100.00	94.00	100.00	94.00	100.00	95.45	100.00	100.00	94.87	95.65	96.00	93.88	100.00	100.00	97.67	100.00	100.00	100.00	97.67	98.50	98.69	0.18	0.613708	0.818096
N	alternative_acceptor	ELL2	chr5	-	chr5:95224835-95226806;chr5:95225973-95226806	chr5:95226112-95226806		chr5:95224835-95225972;chr5:95225973-95226111	chr5:95224834-95224835;chr5:95225972-95225973		13.07	0.00	19.03	3.57	3.33	1.56	0.00	0.84	0.90	0.88	1.66	0.61	2.27	1.00	1.75	2.17	1.50	0.88	NA	7.46	1.89	11.34	9.00	20.73	0.00	5.81	7.95	5.15	4.08	2.47	5.56	9.71	0.00	10.04	10.29	11.79	0.00	5.68	5.68	0.037769	0.560254
N	jcn_only_AA	C19orf66	chr19	+	chr19:10200372-10200577;chr19:10200372-10200573;chr19:10200372-10200636	chr19:10200372-10200604		chr19:10200574-10200577;chr19:10200578-10200604;chr19:10200605-10200636	chr19:10200577-10200578;chr19:10200604-10200605;chr19:10200636-10200637		2.82	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	2.50	2.86	0.00	0.00	0.00	NA	0.00	0.00	4.17	0.00	3.39	1.85	0.00	0.00	0.00	0.00	3.81	0.00	2.17	2.17	0.061091	0.663989
K	jcn_only_AA	YIPF3	chr6	-	chr6:43483834-43484464;chr6:43483852-43484464;chr6:43483926-43484464;chr6:43483929-43484464	chr6:43483785-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		0.00	2.94	4.41	NA	0.00	NA	0.00	0.00	5.00	9.09	0.00	0.00	0.00	6.85	3.90	2.94	6.90	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	4.71	4.90	14.29	3.77	0.00	3.51	1.15	0.00	0.00	0.00	4.94	0.00	3.18	3.18	0.076389	0.663989
K	alternative_acceptor	PSMC5	chr17	+	chr17:61908296-61908395	chr17:61908296-61908379		chr17:61908380-61908395	chr17:61908395-61908396		1.43	0.00	2.04	1.41	2.16	5.66	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	1.43	1.54	1.22	0.00	1.85	3.23	2.48	1.22	0.78	1.39	0.70	1.72	2.99	2.40	0.00	4.69	2.11	2.99	0.00	1.32	1.32	0.407191	0.720635
N	coord_cassette	SDSL	chr12	+	chr12:113860283-113871938	chr12:113860283-113866224;chr12:113866265-113866964;chr12:113867105-113871938		chr12:113866225-113866264;chr12:113866965-113867104			94.12	100.00	100.00	NA	100.00	NA	100.00	94.55	100.00	95.83	100.00	94.12	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.70	NA	100.00	NA	100.00	100.00	100.00	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175072	0.643829
N	cassette	IFI44	chr1	+	chr1:79125169-79129449;chr1:79125169-79128388	chr1:79125169-79126238;chr1:79126377-79128388,chr1:79126377-79129449		chr1:79126239-79126376			66.77	59.09	73.08	57.89	76.47	63.79	76.19	83.44	75.61	76.19	81.25	90.45	74.07	77.78	80.20	80.39	90.48	91.49	58.82	69.51	68.75	88.24	85.71	81.85	35.29	70.97	81.82	82.76	90.91	80.77	39.61	52.10	50.00	65.62	80.00	67.62	58.95	70.24	11.29	0.324810	0.709176
K	cassette	PPM1M	chr3	+	chr3:52282470-52282971	chr3:52282470-52282652;chr3:52282717-52282971		chr3:52282653-52282716			100.00	96.15	93.94	NA	92.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	92.86	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	97.30	NA	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AD	CDK5RAP3	chr17	+	chr17:46053009-46053234;chr17:46053020-46053234	chr17:46053005-46053234		chr17:46053005-46053008;chr17:46053009-46053019	chr17:46053004-46053005;chr17:46053008-46053009		0.00	0.00	0.00	6.67	6.67	10.53	0.00	7.14	0.00	0.00	0.00	4.44	0.00	0.00	4.76	0.00	0.00	0.00	9.09	0.00	0.00	0.00	6.45	9.09	0.00	0.00	9.38	4.35	2.86	6.06	9.09	0.00	4.17	6.25	0.00	2.94	0.00	0.00	0.00	0.834860	0.923769
K	intron_retention	SKIV2L	chr6	+	chr6:31937198-31937291				chr6:31937197-31937198;chr6:31937291-31937292		76.92	81.42	86.67	89.74	74.16	85.84	15.00	6.67	18.18	NA	8.33	NA	15.00	35.71	30.00	NA	30.77	NA	73.48	79.07	62.20	77.78	77.27	85.00	73.43	65.85	75.86	61.54	52.78	74.47	81.43	82.69	71.88	82.61	75.68	88.64	72.66	71.38	-1.27	0.994615	1.000000
K	intron_retention	CHI3L1	chr1	-	chr1:203149006-203149597				chr1:203149005-203149006;chr1:203149597-203149598		8.26	2.03	5.41	17.78	8.00	20.83	0.39	0.36	0.15	1.43	1.00	0.99	0.00	0.00	0.00	8.47	0.00	5.56	5.56	5.60	5.54	20.59	5.00	21.74	12.12	4.41	3.67	11.29	7.14	12.73	7.10	2.73	3.97	5.99	6.42	12.96	3.00	5.00	2.00	0.720277	1.000000
N	cassette	STAC3	chr12	-	chr12:57638150-57638698	chr12:57638150-57638319;chr12:57638406-57638698		chr12:57638320-57638405			91.04	86.25	77.78	94.12	86.54	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.75	83.05	95.12	86.67	76.19	86.36	79.27	94.69	73.33	100.00	96.43	100.00	84.06	83.87	77.92	88.89	81.08	91.43	87.50	92.87	5.37	0.506672	0.788365
K	cassette	COPS5	chr8	-	chr8:67971681-67974088	chr8:67971681-67973526;chr8:67973658-67974088		chr8:67973527-67973657			0.00	6.25	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.44	0.00	0.00	0.00	0.391002	0.709410
K	alternative_last_exon	CUL5,STX3	chr11	+	chr11:59564870-59568250,chr11:59564870-59605242;chr11:59564870-59568327	chr11:59564870-59567147	chr11:59568328-59570179	chr11:59567148-59567420			2.78	5.71	6.06	0.00	1.69	0.00	0.00	0.00	2.56	0.00	2.04	0.00	3.64	0.00	2.94	1.59	0.00	0.00	0.00	1.49	0.00	1.56	1.11	0.00	0.00	2.50	2.50	0.00	1.39	3.45	1.23	2.94	0.00	1.59	2.44	2.22	0.00	1.36	1.36	0.847763	0.914110
N	cassette	FLOT1	chr6	-	chr6:30708369-30708966;chr6:30708369-30709923	chr6:30708369-30708455;chr6:30708576-30708966,chr6:30708576-30709923		chr6:30708456-30708575			96.23	100.00	90.28	95.65	100.00	100.00	100.00	98.01	96.64	98.36	100.00	98.68	100.00	98.53	98.18	98.77	98.94	100.00	100.00	96.55	98.15	100.00	97.92	94.12	NA	98.51	98.21	96.88	100.00	97.10	92.80	95.37	100.00	100.00	97.56	98.70	100.00	97.28	-2.72	0.015103	0.369835
K	jcn_only_AD	ARF1	chr1	+	chr1:228270467-228284778	chr1:228270552-228284778		chr1:228270467-228270551	chr1:228270466-228270467		0.90	0.00	1.11	0.00	0.00	NA	3.22	2.12	2.97	4.75	2.56	4.83	1.55	1.92	3.65	3.70	3.15	3.16	0.00	1.60	3.92	3.33	1.63	1.83	0.00	3.92	0.00	2.13	2.01	7.01	1.52	1.39	0.00	2.01	2.26	4.14	0.00	1.76	1.76	0.114242	0.646283
K	cassette	RHOC	chr1	-	chr1:113246429-113249699	chr1:113246429-113247721;chr1:113247746-113249699		chr1:113247722-113247745			48.41	39.68	36.11	42.05	35.09	46.58	56.48	66.38	68.52	61.49	55.41	64.29	63.97	73.37	69.39	67.72	51.76	62.14	40.74	48.25	46.91	47.32	32.08	51.11	66.67	45.32	35.71	51.69	48.15	60.22	42.61	38.89	36.67	50.68	44.62	57.07	48.61	48.33	-0.28	0.663482	0.876605
N	alternative_acceptor		chr6	+	chr6:348842-350568;chr6:348842-350377;chr6:348842-350802	chr6:348842-350821		chr6:350378-350568;chr6:350569-350802;chr6:350803-350821	chr6:350568-350569;chr6:350802-350803;chr6:350821-350822		16.67	44.19	28.12	45.83	53.49	27.66	55.26	27.27	40.74	45.71	58.33	41.86	42.86	31.82	32.39	60.00	59.09	50.00	45.71	26.09	47.62	46.15	52.63	31.82	19.23	31.58	33.96	45.45	54.29	35.19	35.71	43.18	48.65	46.43	41.67	32.14	44.95	29.42	-15.53	0.036023	0.560254
K	intron_retention	TNIP2	chr4	-	chr4:2746234-2746423				chr4:2746233-2746234;chr4:2746423-2746424		27.45	17.39	20.56	8.20	2.04	5.56	0.00	2.06	0.00	1.96	1.45	0.00	5.41	3.19	3.42	2.13	0.00	1.37	6.67	20.90	11.46	14.29	10.53	12.84	10.00	14.42	14.77	7.45	4.76	5.56	25.35	25.58	20.00	20.78	14.93	12.75	8.34	17.66	9.32	0.849245	1.000000
N	alternative_acceptor	DDIT3	chr12	-	chr12:57911208-57911488;chr12:57911192-57911488;chr12:57911222-57911488;chr12:57911326-57911488	chr12:57911379-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		8.00	9.76	11.11	9.52	8.70	6.25	5.56	2.17	0.00	9.09	8.33	NA	0.00	2.56	4.65	NA	NA	NA	5.56	6.45	5.56	10.00	9.52	5.88	7.69	2.74	9.68	12.50	10.00	11.76	10.29	9.76	8.70	12.12	9.68	12.50	6.62	4.60	-2.03	0.679359	0.880186
K	intron_retention	PNKP	chr19	-	chr19:50365139-50365300				chr19:50365138-50365139;chr19:50365300-50365301		6.25	6.25	9.38	13.33	12.82	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.88	NA	0.00	0.00	1.72	4.35	0.00	0.00	8.33	0.00	10.00	0.00	7.14	0.00	5.26	0.00	8.82	5.41	5.71	3.85	9.52	3.45	3.71	4.35	0.63	0.987611	1.000000
K	intron_retention	SIGLEC1	chr20	-	chr20:3684099-3684471				chr20:3684098-3684099;chr20:3684471-3684472		0.95	17.24	0.00	NA	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.25	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	4.94	0.00	0.00	0.00	0.00	0.00	2.00	2.00	0.00	0.00	5.13	0.00	2.56	0.00	0.13	0.13	0.706882	1.000000
K	alternative_acceptor	ETV6	chr12	+	chr12:12038961-12044474	chr12:12038961-12043874		chr12:12043875-12044474	chr12:12044474-12044475		100.00	100.00	100.00	97.06	100.00	96.55	97.06	100.00	97.01	95.56	98.61	100.00	100.00	100.00	100.00	93.88	96.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	100.00	100.00	100.00	100.00	96.77	100.00	91.30	100.00	96.08	100.00	100.00	100.00	0.00	0.591707	0.844088
K	alternative_acceptor	SLIRP	chr14	+	chr14:78182223-78183844;chr14:78182223-78183822	chr14:78182223-78183838		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		89.47	98.73	82.35	92.86	93.75	92.59	93.55	NA	100.00	94.12	100.00	96.15	97.30	100.00	92.31	92.00	96.23	93.94	88.24	76.47	91.04	88.00	88.37	90.00	96.97	100.00	86.21	95.83	94.44	100.00	83.33	96.15	89.36	85.19	94.59	87.10	95.26	89.47	-5.79	0.437455	0.747010
K	jcn_only_AD	THAP4	chr2	-	chr2:242524141-242541310	chr2:242524141-242541229		chr2:242541230-242541310	chr2:242541310-242541311		0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	3.23	1.92	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	5.26	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3669267-3669801;chr20:3668605-3669801	chr20:3669285-3669801		chr20:3668605-3669266;chr20:3669267-3669284	chr20:3668604-3668605;chr20:3669266-3669267		2.61	4.44	5.48	4.55	3.17	3.31	0.29	0.56	0.77	0.88	0.88	0.46	0.62	0.90	0.87	1.89	0.46	0.55	4.35	1.77	2.06	6.25	4.60	2.62	4.20	2.12	2.48	2.69	1.61	1.42	2.03	1.49	4.44	3.96	3.08	3.17	4.28	1.90	-2.38	0.163002	0.660713
K	alternative_last_exon	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139918669-139921756	chr5:139918669-139918943	chr5:139921757-139921866	chr5:139918944-139919441			88.06	92.37	85.39	85.45	91.43	81.48	71.43	47.62	69.57	63.16	76.92	60.00	62.96	52.63	53.57	65.00	75.00	NA	89.09	82.98	86.36	82.50	86.90	78.79	84.15	66.04	76.83	72.73	81.67	72.73	86.67	84.78	89.74	83.58	86.96	73.85	86.62	74.51	-12.11	0.241970	0.458097
N	cassette	TMEM255B	chr13	+	chr13:114472134-114502311	chr13:114472134-114498120;chr13:114498211-114502311		chr13:114498121-114498210			100.00	100.00	NA	NA	100.00	86.67	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	93.75	NA	100.00	97.96	100.00	100.00	100.00	80.00	100.00	91.67	100.00	93.33	NA	100.00	NA	NA	100.00	100.00	96.88	-3.12	0.182026	0.709176
N	jcn_only_AA	FGD2	chr6	+	chr6:36983637-36988316	chr6:36983637-36985292		chr6:36985293-36988316	chr6:36988316-36988317		5.49	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.52	0.00	0.00	0.00	4.76	NA	2.63	NA	NA	0.00	0.00	0.00	7.63	NA	0.00	0.00	5.00	8.00	0.00	NA	0.00	0.00	5.26	0.00	4.06	4.06	0.026667	0.636137
N	cassette	PCNP	chr3	+	chr3:101298849-101309058;chr3:101293124-101309058	chr3:101298849-101304280,chr3:101293124-101304280;chr3:101304356-101309058		chr3:101304281-101304355			92.16	84.00	95.12	100.00	91.67	88.89	97.47	97.06	96.88	98.81	96.88	100.00	100.00	96.97	95.24	97.37	97.37	97.01	100.00	100.00	100.00	95.00	96.15	100.00	100.00	100.00	93.24	100.00	92.68	88.46	87.10	95.16	100.00	98.31	96.05	94.52	100.00	97.02	-2.98	0.691039	0.886422
N	alternative_donor	PVRL2	chr19	+	chr19:45381677-45385467;chr19:45383359-45385467	chr19:45377736-45385467		chr19:45377736-45381676;chr19:45381677-45383358	chr19:45377735-45377736;chr19:45381676-45381677		76.06	58.14	79.64	21.95	35.71	4.61	81.82	67.96	71.13	79.46	81.54	78.88	77.78	66.87	73.49	66.15	83.78	82.20	5.56	78.73	42.01	62.79	67.39	66.02	NA	73.63	75.82	52.46	56.10	38.70	66.33	78.78	18.75	63.49	70.45	64.29	58.14	70.79	12.65	0.209358	0.581601
N	jcn_only_AD	NCBP2	chr3	-	chr3:196663954-196664380	chr3:196663954-196664042		chr3:196664043-196664380	chr3:196664380-196664381		0.00	0.00	0.00	0.00	2.50	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	1.25	0.00	7.69	6.25	5.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.817532	0.914961
N	alternative_acceptor	PDIA4	chr7	-	chr7:148703146-148705250	chr7:148703149-148705250		chr7:148703146-148703148	chr7:148703145-148703146		0.00	0.00	0.00	NA	0.00	NA	0.66	0.00	1.72	1.72	1.22	0.00	1.12	0.00	0.00	0.95	0.91	2.90	0.00	0.00	0.00	0.00	0.00	5.88	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	7.14	0.00	1.85	2.70	0.66	0.00	-0.66	0.258536	0.709013
N	cassette	RAB34	chr17	-	chr17:27043077-27045139;chr17:27043080-27044230;chr17:27043077-27044230;chr17:27042920-27045139;chr17:27042920-27044230	chr17:27043080-27043920,chr17:27043077-27043920,chr17:27042920-27043920;chr17:27044013-27044230,chr17:27044013-27045139		chr17:27043921-27044012			86.27	86.96	87.29	NA	88.24	NA	100.00	100.00	98.55	100.00	100.00	NA	100.00	100.00	98.21	94.12	100.00	NA	100.00	92.86	84.38	NA	83.33	NA	100.00	94.59	95.00	100.00	100.00	NA	88.89	90.32	90.91	100.00	95.00	100.00	100.00	93.72	-6.28	0.461074	0.758088
N	alternative_acceptor	EED,NDUFV1	chr11	+	chr11:85988181-85988959	chr11:85988181-85988813		chr11:85988814-85988959	chr11:85988959-85988960		10.00	11.11	11.76	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.00	6.67	6.45	5.88	0.00	0.00	0.00	7.69	9.68	0.00	0.00	0.00	0.00	13.95	9.09	5.56	0.00	4.55	2.50	3.33	0.83	0.960673	0.990505
K	intron_retention	PSMC4	chr19	+	chr19:40486054-40486192				chr19:40486053-40486054;chr19:40486192-40486193		5.41	4.97	2.63	3.95	5.83	5.77	0.00	0.00	0.00	0.00	0.00	0.00	0.52	1.56	1.01	0.53	0.46	0.00	4.55	1.18	4.20	3.45	2.55	2.82	1.92	1.04	5.33	1.27	4.07	3.49	6.42	4.04	4.35	3.54	3.73	4.27	3.13	1.37	-1.76	0.755254	1.000000
N	jcn_only_AA	SYMPK	chr19	-	chr19:46355622-46355739	chr19:46355644-46355739		chr19:46355622-46355643	chr19:46355621-46355622		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	cassette	GPS1	chr17	+	chr17:80013099-80013876	chr17:80013099-80013615;chr17:80013702-80013876		chr17:80013616-80013701			100.00	100.00	96.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	93.55	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	ARL6IP4	chr12	+	chr12:123465360-123465675;chr12:123463876-123465675;chr12:123465293-123465675;chr12:123465535-123465675	chr12:123465435-123465675		chr12:123463876-123465292;chr12:123465293-123465359;chr12:123465360-123465434;chr12:123465435-123465534	chr12:123463875-123463876;chr12:123465292-123465293;chr12:123465359-123465360;chr12:123465434-123465435		0.00	0.00	8.33	0.00	0.00	5.41	1.79	3.57	5.36	2.17	1.69	0.00	1.65	0.00	6.06	3.08	2.05	1.69	0.00	0.00	1.14	0.00	2.67	0.00	6.48	14.29	6.12	0.00	3.09	0.00	0.00	6.67	1.41	0.00	0.00	0.00	1.53	0.00	-1.53	0.680796	0.836015
N	cassette	SNX5	chr20	-	chr20:17932240-17934639;chr20:17932240-17936008	chr20:17932240-17933230;chr20:17933355-17936008,chr20:17933355-17934639		chr20:17933231-17933354			100.00	100.00	100.00	NA	100.00	NA	99.37	100.00	100.00	100.00	99.16	100.00	99.35	100.00	100.00	100.00	99.07	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	NA	95.35	100.00	100.00	97.89	100.00	100.00	100.00	0.00	0.174753	0.709176
N	alternative_acceptor	RGS2	chr1	+	chr1:192779398-192779499	chr1:192779398-192779485		chr1:192779486-192779499	chr1:192779499-192779500		4.41	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.83	NA	NA	0.48	0.00	0.00	0.00	8.82	2.01	0.00	0.00	0.00	0.83	0.00	2.21	2.21	0.215170	0.671511
K	cassette	STYXL1	chr7	-	chr7:75634723-75657959	chr7:75634723-75651168;chr7:75651311-75657959		chr7:75651169-75651310			100.00	100.00	83.33	NA	100.00	NA	100.00	100.00	94.74	NA	100.00	NA	100.00	100.00	100.00	100.00	88.89	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	90.48	NA	89.47	NA	100.00	93.75	91.67	90.91	100.00	92.31	100.00	100.00	0.00	0.363217	0.709176
N	intron_retention		chr7	+	chr7:44808714-44809053				chr7:44808713-44808714;chr7:44809053-44809054		100.00	100.00	100.00	90.91	100.00	100.00	NA	80.00	88.89	NA	NA	NA	NA	84.21	90.32	NA	NA	NA	93.75	95.00	92.86	100.00	97.22	91.67	100.00	100.00	100.00	92.31	95.00	100.00	100.00	98.90	100.00	100.00	100.00	100.00	100.00	97.50	-2.50	0.777396	1.000000
N	alternative_acceptor	LILRB4	chr19	+	chr19:55177888-55178144;chr19:55177888-55178161;chr19:55177888-55177991	chr19:55177888-55178147		chr19:55177992-55178144;chr19:55178145-55178147;chr19:55178148-55178161	chr19:55178144-55178145;chr19:55178147-55178148;chr19:55178161-55178162		89.30	93.41	91.46	87.41	87.58	88.19	86.34	85.92	86.95	84.88	86.40	86.64	81.13	80.08	78.99	79.21	81.28	79.57	89.26	88.65	88.99	88.93	88.80	87.55	94.12	88.17	89.81	88.84	88.11	87.69	90.89	90.72	90.36	87.60	87.85	88.25	89.81	88.41	-1.40	0.460541	0.762514
N	alternative_acceptor		chr7	+	chr7:100025985-100028652	chr7:100025985-100028237		chr7:100028238-100028652	chr7:100028652-100028653		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	SF3B6	chr2	-	chr2:24291330-24299069	chr2:24291330-24296945;chr2:24297065-24299069		chr2:24296946-24297064			96.43	94.07	96.23	100.00	100.00	100.00	97.67	100.00	97.37	97.75	97.17	100.00	97.87	97.67	100.00	98.11	97.50	98.28	97.10	96.47	100.00	100.00	100.00	96.49	100.00	100.00	96.47	100.00	100.00	94.55	97.65	98.29	93.98	100.00	100.00	97.01	97.38	97.66	0.28	0.309537	0.709176
N	cassette	DPM1	chr20	-	chr20:49552800-49558567	chr20:49552800-49557401;chr20:49557493-49558567		chr20:49557402-49557492			89.47	100.00	100.00	88.24	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	90.91	100.00	89.80	100.00	84.62	82.35	100.00	100.00	88.89	94.74	NA	100.00	90.00	90.00	100.00	94.44	86.67	88.00	100.00	100.00	100.00	100.00	100.00	94.73	-5.27	0.411415	0.726584
K	intron_retention	DALRD3	chr3	-	chr3:49053306-49053405				chr3:49053305-49053306;chr3:49053405-49053406		48.57	74.42	47.83	68.57	73.53	70.27	40.00	NA	54.55	NA	35.71	NA	52.17	30.00	75.00	64.71	60.00	NA	71.62	55.00	57.14	72.73	67.74	NA	87.98	55.00	63.64	73.33	68.29	69.23	51.61	57.14	79.31	74.07	63.33	55.00	73.02	51.61	-21.41	0.478667	1.000000
K	cassette	SP100	chr2	+	chr2:231327234-231331015	chr2:231327234-231328781;chr2:231328866-231331015		chr2:231328782-231328865			98.74	100.00	96.84	96.55	97.50	98.82	98.04	98.70	99.24	98.36	100.00	99.42	98.18	100.00	98.71	97.75	100.00	97.48	100.00	99.23	96.67	100.00	100.00	99.15	100.00	100.00	98.75	100.00	100.00	99.42	96.33	96.80	91.67	98.77	100.00	98.98	99.09	98.98	-0.11	0.570775	0.830383
K	alternative_first_exon	CFLAR	chr2	+	chr2:201987471-201994451,chr2:201994244-201994451,chr2:201993830-201994451,chr2:201990514-201994451,chr2:201993825-201994451;chr2:201981205-201994451	chr2:201983625-201994451	chr2:201980827-201981204	chr2:201983214-201983624			54.79	73.91	53.33	77.78	NA	NA	50.00	45.71	55.56	35.29	43.90	40.23	44.23	55.77	67.89	43.86	46.51	48.84	90.00	56.34	80.00	46.88	63.16	45.31	NA	52.88	52.83	55.88	64.00	54.17	60.27	63.27	92.31	52.50	54.55	50.78	73.91	55.28	-18.63	0.188985	0.394686
N	alternative_acceptor	MAP3K11	chr11	-	chr11:65375920-65380488	chr11:65376020-65380488		chr11:65375920-65376019	chr11:65375919-65375920		7.69	14.55	8.11	NA	8.33	NA	0.87	2.56	1.54	1.23	2.53	0.00	2.17	3.75	4.29	1.33	1.10	1.75	5.88	6.00	4.00	5.88	2.82	3.70	10.00	6.49	4.67	2.94	1.85	6.25	7.14	6.38	0.00	6.25	4.41	4.76	4.03	6.25	2.22	0.991777	0.996506
N	alternative_acceptor	NPEPL1,STX16-NPEPL1	chr20	+	chr20:4163496-4164229	chr20:4163496-4164140		chr20:4164141-4164229	chr20:4164229-4164230		95.77	NA	100.00	95.83	100.00	100.00	100.00	100.00	100.00	98.46	98.25	97.04	100.00	100.00	100.00	92.16	100.00	97.06	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	92.86	100.00	96.08	100.00	100.00	95.00	100.00	100.00	100.00	0.00	0.180119	0.660713
N	alternative_acceptor	EIF3B	chr7	+	chr7:2419147-2420049;chr7:2419147-2419918;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2419913		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		22.73	30.73	42.86	33.16	30.39	29.91	37.04	NA	35.29	41.25	37.04	40.00	31.48	30.00	25.00	26.81	41.38	30.43	33.84	35.00	35.42	25.74	34.26	35.09	33.67	NA	25.00	33.75	40.82	32.58	31.03	29.41	35.66	34.25	27.85	31.25	33.76	30.52	-3.24	0.215531	0.671511
N	alternative_acceptor	ATXN2L,MAP1LC3B	chr16	+	chr16:28846721-28846875;chr16:28846721-28846869;chr16:28846721-28846933	chr16:28846721-28846866		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		13.33	0.00	11.43	18.18	7.69	NA	12.00	9.09	8.89	8.33	12.20	12.00	19.35	20.69	18.00	14.71	19.23	15.79	NA	14.29	11.76	5.88	13.04	12.50	0.00	13.04	6.98	14.29	7.41	16.67	17.39	16.67	16.67	22.58	24.00	19.51	12.00	13.81	1.81	0.302425	0.709013
K	intron_retention	SLC16A3	chr17	+	chr17:80195770-80196577				chr17:80195769-80195770;chr17:80196577-80196578		3.28	2.69	4.98	3.96	4.68	9.40	2.68	2.70	5.06	4.18	3.47	0.00	2.56	3.62	4.14	3.78	3.45	2.04	2.39	3.38	2.77	5.71	8.43	8.62	7.03	2.92	3.42	3.27	4.67	6.72	4.01	4.13	3.73	3.33	4.11	7.05	2.69	3.33	0.65	0.758645	1.000000
K	alternative_first_exon	UBE2F,UBE2F-SCLY	chr2	+	chr2:238875811-238881733,chr2:238876334-238881733;chr2:238875775-238881733	chr2:238877552-238881733	chr2:238875597-238875774	chr2:238877435-238877551			4.00	0.00	3.03	NA	0.00	NA	0.00	8.97	18.00	0.00	0.00	5.00	1.92	4.55	8.51	0.00	0.00	3.12	0.00	3.45	4.17	0.00	0.00	0.00	0.00	5.00	3.85	0.00	0.00	5.26	10.81	4.17	0.00	0.00	0.00	6.52	0.00	4.78	4.78	0.004397	0.034507
K	jcn_only_AA	EHMT1	chr9	+	chr9:140712591-140741011	chr9:140712591-140728800					100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	C18orf8	chr18	+	chr18:21110262-21110536;chr18:21110262-21110474;chr18:21110262-21110363	chr18:21110262-21110350		chr18:21110351-21110363;chr18:21110364-21110474;chr18:21110475-21110536	chr18:21110363-21110364;chr18:21110474-21110475;chr18:21110536-21110537		96.05	95.77	95.45	93.75	93.65	92.65	86.36	95.24	91.89	86.11	84.00	93.10	86.96	96.88	89.47	89.47	94.74	100.00	93.85	100.00	90.91	93.18	96.61	90.91	95.74	92.11	97.01	93.55	90.62	94.44	96.64	97.27	93.24	100.00	94.12	94.59	93.54	96.34	2.80	0.072866	0.663989
N	alternative_acceptor	TNIP1	chr5	-	chr5:150410235-150411847;chr5:150410107-150411847;chr5:150410481-150411847;chr5:150410875-150411847;chr5:150410333-150411847	chr5:150410309-150411847		chr5:150410107-150410234;chr5:150410235-150410308;chr5:150410309-150410332;chr5:150410333-150410480;chr5:150410481-150410874	chr5:150410106-150410107;chr5:150410234-150410235;chr5:150410308-150410309;chr5:150410332-150410333;chr5:150410480-150410481		77.75	75.00	76.99	80.68	86.11	78.74	84.78	82.82	82.44	84.00	89.23	78.64	86.05	86.67	82.14	84.50	86.36	81.77	78.26	78.30	77.85	79.26	82.39	81.37	81.82	79.59	79.57	85.61	86.78	82.10	74.11	73.77	79.61	79.62	79.10	77.60	80.72	78.94	-1.77	0.679090	0.880186
K	jcn_only_AA	NMB	chr15	-	chr15:85198636-85200406	chr15:85198641-85200406		chr15:85198636-85198640	chr15:85198635-85198636		70.00	41.67	70.59	65.62	57.14	68.75	71.43	78.57	80.00	85.71	84.21	67.86	68.18	72.73	76.92	82.05	75.00	83.33	50.00	50.00	70.89	56.25	68.18	64.71	73.68	70.59	75.00	73.68	66.67	80.00	69.05	51.72	61.90	69.57	76.47	80.77	65.04	70.30	5.25	0.289717	0.663989
N	coord_cassette	TMEM14C	chr6	+	chr6:10723475-10728872	chr6:10723475-10724802;chr6:10724867-10725193;chr6:10725271-10726139;chr6:10726242-10728872		chr6:10724803-10724866;chr6:10725194-10725270;chr6:10726140-10726241			97.44	100.00	94.20	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	98.53	98.28	100.00	100.00	96.61	98.94	100.00	100.00	100.00	93.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	97.78	96.55	96.49	100.00	97.37	100.00	100.00	100.00	100.00	0.00	0.344553	0.643829
K	intron_retention	FDXR	chr17	-	chr17:72862691-72862905				chr17:72862690-72862691;chr17:72862905-72862906		0.00	0.00	9.68	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	6.25	0.00	NA	NA	NA	9.52	4.55	4.65	NA	NA	NA	4.17	1.37	0.00	5.88	0.00	0.00	0.00	4.17	4.17	0.413064	1.000000
K	jcn_only_AD	FDXR	chr17	-	chr17:72868259-72868893;chr17:72868259-72868367	chr17:72868259-72868990		chr17:72868368-72868893;chr17:72868894-72868990	chr17:72868893-72868894;chr17:72868990-72868991		90.91	86.67	87.50	NA	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	92.86	100.00	100.00	NA	NA	NA	NA	100.00	97.06	NA	NA	NA	100.00	92.19	85.71	80.00	80.00	NA	92.86	100.00	7.14	0.263097	0.657607
N	cassette	GRAMD1A	chr19	+	chr19:35512769-35514139	chr19:35512769-35512854;chr19:35512943-35514139		chr19:35512855-35512942			97.61	100.00	99.03	98.31	100.00	98.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.76	100.00	100.00	100.00	91.43	96.99	97.29	98.40	95.74	99.14	100.00	98.73	98.72	99.32	100.00	99.61	96.79	95.75	89.13	100.00	94.94	98.77	100.00	98.17	-1.83	0.488067	0.774715
N	jcn_only_AD	THOC7	chr3	-	chr3:63825450-63850312;chr3:63825450-63850053;chr3:63825450-63849447	chr3:63825450-63849179		chr3:63849180-63849447;chr3:63849448-63850053;chr3:63850054-63850312	chr3:63849447-63849448;chr3:63850053-63850054;chr3:63850312-63850313		0.00	0.00	16.67	NA	NA	NA	7.14	0.00	11.76	0.00	6.67	7.14	3.70	13.33	13.04	4.76	5.41	6.25	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	0.00	0.00	4.35	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.733629	0.861191
N	jcn_only_AA	LRCH4,RP11-44M6.7	chr7	-	chr7:100176089-100176272	chr7:100176135-100176272		chr7:100176089-100176134	chr7:100176088-100176089		88.42	96.30	94.95	NA	95.65	NA	100.00	98.73	100.00	94.74	96.67	100.00	95.18	96.63	95.65	100.00	96.55	100.00	100.00	89.47	100.00	92.31	95.83	100.00	100.00	96.12	95.06	83.33	96.00	100.00	84.09	94.87	93.55	100.00	100.00	95.12	98.15	92.80	-5.36	0.082883	0.663989
K	jcn_only_AA	POLR2H	chr3	+	chr3:184084589-184085964	chr3:184084589-184085900		chr3:184085901-184085964	chr3:184085964-184085965		7.69	17.02	3.77	11.11	4.76	5.00	12.00	0.00	15.38	14.29	0.00	NA	4.00	6.25	13.89	7.14	12.00	15.79	8.26	3.57	9.09	10.00	4.76	NA	2.02	0.00	9.76	15.38	13.04	17.65	5.13	4.26	4.65	14.29	7.14	11.11	6.46	4.35	-2.11	0.151768	0.663989
N	alternative_acceptor	COLGALT1,SMARCA4	chr19	+	chr19:17690419-17691344;chr19:17690419-17691507;chr19:17690419-17691230;chr19:17690419-17690895	chr19:17690419-17690826		chr19:17690827-17690895;chr19:17690896-17691230;chr19:17691231-17691344;chr19:17691345-17691507	chr19:17690895-17690896;chr19:17691230-17691231;chr19:17691344-17691345;chr19:17691507-17691508		3.66	4.17	2.70	NA	3.85	NA	0.71	0.00	2.82	1.69	1.96	0.00	1.03	2.74	2.56	1.60	2.40	0.00	0.00	2.86	3.33	7.14	4.26	4.00	2.86	5.41	3.09	4.35	4.17	0.00	0.00	5.77	4.55	3.70	4.00	3.08	1.94	2.80	0.85	0.850819	0.946659
N	coord_cassette	DGUOK	chr2	+	chr2:74174016-74185272	chr2:74174016-74177711;chr2:74177860-74184251;chr2:74184368-74185272		chr2:74177712-74177859;chr2:74184252-74184367			65.00	71.79	65.52	73.68	81.58	76.47	83.33	NA	71.43	NA	81.82	NA	85.71	NA	100.00	70.00	80.00	NA	70.83	66.67	64.29	NA	87.50	NA	70.00	81.82	79.17	80.00	100.00	NA	50.00	72.73	67.86	100.00	75.00	80.00	71.31	65.84	-5.47	0.271975	0.643829
K	intron_retention	PYGB	chr20	+	chr20:25271259-25273041				chr20:25271258-25271259;chr20:25273041-25273042		0.00	0.00	3.57	NA	0.00	NA	0.00	0.00	0.00	0.00	3.45	0.00	4.17	0.00	2.94	0.00	4.48	0.00	NA	0.00	NA	0.00	7.32	0.00	0.00	0.00	3.57	NA	3.45	NA	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	intron_retention		chr11	-	chr11:64662915-64663933				chr11:64662914-64662915;chr11:64663933-64663934		9.09	16.67	20.00	NA	10.00	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	8.33	16.67	20.00	NA	0.00	NA	18.75	21.43	26.92	NA	NA	NA	14.81	18.92	18.18	NA	NA	NA	17.43	15.74	-1.68	0.980074	1.000000
N	jcn_only_AA	CUEDC1	chr17	-	chr17:55953561-55956971;chr17:55953557-55956971	chr17:55951079-55956971		chr17:55951079-55953556;chr17:55953557-55953560	chr17:55951078-55951079;chr17:55953556-55953557		100.00	100.00	97.56	NA	100.00	NA	97.50	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	97.73	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	alternative_first_exon	CTD-2574D22.6,MVP	chr16	+	chr16:29832713-29841794;chr16:29831832-29841794;chr16:29837414-29841794	chr16:29831224-29841794	chr16:29831715-29831831;chr16:29837263-29837413	chr16:29830876-29831223			22.22	77.78	20.00	NA	93.33	NA	51.52	2.63	10.34	19.35	28.21	3.45	63.64	2.94	10.34	36.00	43.59	3.70	89.47	8.33	63.64	NA	56.52	17.65	100.00	3.12	25.93	27.78	65.00	7.69	12.50	17.39	82.35	17.65	44.44	3.85	80.06	5.72	-74.34	0.000056	0.004820
K	intron_retention	ARHGEF18,CTD-2207O23.3	chr19	+	chr19:7529577-7531803				chr19:7529576-7529577;chr19:7531803-7531804		0.00	9.09	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	10.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	0.00	4.54	0.00	-4.54	0.629122	1.000000
N	alternative_acceptor	EIF4A1	chr17	+	chr17:7480484-7480665;chr17:7480484-7480751	chr17:7480484-7480661		chr17:7480662-7480665;chr17:7480666-7480751	chr17:7480665-7480666;chr17:7480751-7480752		95.56	100.00	99.00	89.07	89.53	86.25	97.05	97.37	95.74	95.30	93.38	94.58	100.00	96.15	94.40	96.04	100.00	100.00	90.16	94.32	93.96	89.06	89.32	89.44	100.00	94.17	100.00	87.24	89.04	91.82	93.42	92.96	92.29	87.18	88.92	88.41	98.53	94.94	-3.59	0.477894	0.777631
N	alternative_donor	PPP6R1	chr19	-	chr19:55758478-55767042;chr19:55758478-55763461	chr19:55758478-55769802		chr19:55763462-55767042;chr19:55767043-55769802	chr19:55767042-55767043;chr19:55769802-55769803		100.00	93.33	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	NA	100.00	NA	100.00	100.00	100.00	98.61	100.00	1.39	0.231334	0.602273
N	jcn_only_AD		chr8	-	chr8:145619516-145619602	chr8:145619516-145619593		chr8:145619594-145619602	chr8:145619602-145619603		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	98.18	100.00	96.77	100.00	100.00	91.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
N	alternative_acceptor	GUK1	chr1	+	chr1:228333326-228333736;chr1:228333326-228333587;chr1:228333326-228333726	chr1:228333326-228333713		chr1:228333588-228333713;chr1:228333714-228333726;chr1:228333727-228333736	chr1:228333713-228333714;chr1:228333726-228333727;chr1:228333736-228333737		2.17	1.83	4.49	2.41	1.33	3.28	1.44	2.41	0.00	1.20	0.50	0.86	1.31	0.00	1.94	0.00	0.45	0.00	1.61	3.95	2.36	3.75	1.75	1.45	1.64	3.37	4.44	1.39	0.85	3.23	4.03	5.26	1.85	1.98	2.48	2.16	1.62	2.89	1.27	0.153226	0.660151
N	alternative_donor	LUC7L	chr16	-	chr16:239339-239929;chr16:239339-239979;chr16:239339-239966	chr16:239339-239945		chr16:239930-239945;chr16:239946-239966;chr16:239967-239979	chr16:239945-239946;chr16:239966-239967;chr16:239979-239980		0.00	0.00	0.00	3.51	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	4.55	0.00	6.06	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	1.59	0.00	0.00	2.56	0.00	0.00	0.00	0.531387	0.776719
N	jcn_only_AD	LAIR1	chr19	-	chr19:54871680-54872522;chr19:54871680-54872277	chr19:54871680-54872616					42.89	24.74	43.88	47.83	35.62	50.00	17.78	28.63	28.76	18.02	15.86	19.12	24.00	24.59	25.93	27.46	14.03	26.79	42.42	40.76	40.91	37.04	32.00	33.33	20.83	35.65	33.39	22.06	25.38	31.91	48.84	50.00	38.89	32.11	32.78	33.48	24.37	38.20	13.84	0.144856	0.657607
K	intron_retention	AP5Z1	chr7	+	chr7:4830223-4830303				chr7:4830222-4830223;chr7:4830303-4830304		11.24	13.95	18.18	8.82	12.05	8.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	1.33	0.00	0.00	9.09	8.70	8.96	9.09	12.36	5.88	10.87	5.97	8.33	6.56	10.94	3.53	14.78	15.38	10.34	11.25	9.46	9.35	9.71	7.33	-2.38	0.985205	1.000000
N	jcn_only_AD	ANAPC13	chr3	-	chr3:134201774-134202097;chr3:134201774-134204793;chr3:134201774-134204157;chr3:134201774-134204161	chr3:134201774-134204542		chr3:134202098-134204157;chr3:134204158-134204161;chr3:134204162-134204542;chr3:134204543-134204793	chr3:134204157-134204158;chr3:134204161-134204162;chr3:134204542-134204543;chr3:134204793-134204794		0.00	0.00	2.50	NA	0.00	NA	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	13.33	0.00	0.00	0.00	0.00	0.00	7.14	NA	0.00	5.71	0.00	0.00	0.00	0.00	7.69	0.00	13.33	0.00	5.26	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	ZDHHC4	chr7	+	chr7:6623063-6624646	chr7:6623176-6624646		chr7:6623063-6623175	chr7:6623062-6623063		5.88	0.00	3.23	NA	0.00	NA	0.00	0.00	0.00	0.00	3.45	NA	3.03	6.25	3.85	7.14	0.00	NA	0.00	6.67	0.00	NA	3.70	NA	NA	0.00	2.50	NA	0.00	0.00	14.29	3.33	0.00	0.00	3.57	0.00	0.00	6.06	6.06	0.072920	0.460595
N	cassette	PQLC1	chr18	-	chr18:77664184-77703328;chr18:77690312-77703328;chr18:77679401-77703328	chr18:77664184-77693968,chr18:77690312-77693968,chr18:77679401-77693968;chr18:77694023-77703328		chr18:77693969-77694022			25.30	23.16	31.25	24.14	36.51	35.29	41.18	44.93	34.69	33.70	42.71	40.35	45.63	34.69	37.14	30.77	35.24	26.09	38.30	33.33	29.55	44.12	37.10	40.62	34.78	28.95	32.00	41.30	33.90	32.35	18.18	27.27	36.73	31.82	40.00	30.77	37.52	31.14	-6.38	0.264624	0.709176
K	alternative_acceptor	KATNB1,SPNS1	chr16	+	chr16:28986422-28986508	chr16:28986422-28986504		chr16:28986505-28986508	chr16:28986508-28986509	chr16:28986115-28986421;chr16:28986509-28986713	80.00	85.71	82.35	NA	NA	NA	75.68	76.92	85.00	82.61	70.00	75.00	70.21	80.00	82.14	84.78	72.73	75.00	NA	64.29	NA	77.78	80.00	87.50	81.25	80.00	85.71	86.67	84.00	NA	78.57	75.00	NA	78.26	79.17	72.00	78.47	79.28	0.82	0.719186	0.894796
K	intron_retention		chr10	+	chr10:81109510-81111242				chr10:81109509-81109510;chr10:81111242-81111243		8.87	4.92	10.00	3.39	3.61	4.55	0.00	1.47	0.63	0.68	1.19	0.55	0.00	0.79	1.89	0.95	1.14	1.75	10.00	13.04	4.46	6.28	6.54	8.00	NA	7.14	7.27	1.96	4.21	1.66	8.96	9.72	11.90	6.57	5.69	5.15	4.92	8.00	3.08	0.800934	1.000000
N	jcn_only_AD	CHPT1	chr12	+	chr12:102120296-102122678;chr12:102117626-102122678;chr12:102120183-102122678	chr12:102120276-102122678					NA	7.48	0.00	12.12	18.00	0.00	5.00	14.29	12.50	0.00	10.00	8.70	14.58	28.57	11.76	0.00	20.59	18.75	14.00	8.33	11.43	16.67	8.16	0.00	21.43	NA	15.79	22.86	12.00	9.76	0.00	16.67	19.84	11.36	17.95	7.69	14.29	11.31	-2.98	0.894820	0.946507
K	cassette	SH3BP1	chr22	+	chr22:38035854-38037380	chr22:38035854-38037132;chr22:38037176-38037380		chr22:38037133-38037175			93.55	80.95	81.82	NA	81.82	NA	92.86	86.89	85.19	90.00	93.02	NA	94.12	86.57	92.00	90.91	94.69	NA	NA	93.10	NA	NA	87.50	NA	61.54	88.46	85.42	NA	84.62	NA	75.00	85.00	NA	NA	95.00	NA	86.91	87.67	0.77	0.576859	0.835263
K	intron_retention	ARAP1	chr11	-	chr11:72399583-72403797				chr11:72399582-72399583;chr11:72403797-72403798		32.56	20.51	36.73	19.05	24.14	30.00	4.26	0.00	7.89	2.70	2.17	11.76	11.90	7.84	10.53	2.94	2.56	9.09	13.51	26.67	12.86	25.00	17.95	35.71	37.93	20.00	25.71	25.00	32.14	30.56	16.67	20.00	11.11	22.86	31.11	33.33	12.71	18.34	5.63	0.949532	1.000000
K	intron_retention		chr11	+	chr11:60160260-60161259				chr11:60160259-60160260;chr11:60161259-60161260		5.23	2.61	7.69	3.77	3.78	0.00	0.92	0.86	0.00	0.00	1.94	0.00	1.65	0.00	0.00	0.00	2.37	0.00	1.10	2.36	0.00	4.00	5.54	0.00	0.00	3.52	5.00	7.81	7.29	0.00	1.60	1.82	2.98	9.55	8.96	1.60	1.38	1.98	0.60	0.791865	1.000000
K	intron_retention	C7orf43	chr7	-	chr7:99753079-99753293				chr7:99753078-99753079;chr7:99753293-99753294		12.50	14.29	16.28	NA	14.63	NA	0.00	0.00	0.00	0.00	2.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	35.71	3.70	10.00	7.14	7.50	10.00	NA	0.00	12.20	0.00	5.13	13.33	3.57	7.14	21.05	5.88	3.03	0.00	14.29	1.78	-12.50	0.764937	1.000000
K	intron_retention	ADRBK1	chr11	+	chr11:67048656-67048929				chr11:67048655-67048656;chr11:67048929-67048930		1.39	5.63	4.23	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	2.08	0.00	0.00	3.28	0.00	0.00	0.00	0.90	0.00	0.00	NA	0.00	1.04	6.25	0.00	3.77	0.00	0.00	0.00	0.00	0.910995	1.000000
K	intron_retention	B2M	chr15	+	chr15:45009990-45010041				chr15:45009989-45009990;chr15:45010041-45010042		92.84	91.87	92.10	90.11	90.46	87.36	93.08	93.32	93.17	93.11	93.08	92.62	92.86	93.40	93.45	92.60	93.72	93.56	85.87	88.99	87.06	85.78	85.60	87.21	90.04	92.68	92.52	86.42	84.78	86.45	88.61	89.09	86.05	89.23	87.90	87.92	90.96	92.76	1.80	0.617649	1.000000
N	intron_retention		chr12	-	chr12:125397867-125398094				chr12:125397866-125397867;chr12:125398094-125398095		100.00	99.26	100.00	100.00	100.00	100.00	100.00	100.00	99.40	41.26	99.28	100.00	97.91	100.00	100.00	100.00	100.00	80.16	100.00	100.00	100.00	100.00	100.00	100.00	70.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.96	99.63	100.00	0.37	0.529239	1.000000
N	jcn_only_AA	SLTM	chr15	-	chr15:59179740-59180583	chr15:59179820-59180583		chr15:59179740-59179819	chr15:59179739-59179740		0.00	0.00	0.00	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	NA	2.63	0.00	0.00	4.76	0.00	0.00	4.48	NA	2.13	0.00	5.00	0.00	0.00	0.00	0.899913	0.966004
N	jcn_only_AA	XPNPEP1	chr10	-	chr10:111625071-111628371	chr10:111627345-111628371		chr10:111625071-111627344	chr10:111625070-111625071		0.00	0.00	0.00	0.00	1.41	0.00	4.44	5.00	0.00	6.38	3.85	0.00	1.64	0.00	3.37	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.874645	0.951519
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140001900-140001989;chr9:140001900-140001982	chr9:140001900-140001993		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		21.74	0.00	17.39	NA	5.26	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	16.67	13.33	4.17	NA	8.00	NA	13.33	20.00	23.81	NA	6.67	NA	37.50	25.00	16.67	9.09	0.00	12.50	6.67	20.87	14.20	0.050000	0.570243
K	intron_retention	DHX38	chr16	+	chr16:72142507-72142698				chr16:72142506-72142507;chr16:72142698-72142699		2.04	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	4.88	0.00	2.08	0.00	4.00	0.00	0.00	1.52	0.00	0.00	0.00	5.17	4.17	0.00	0.00	0.00	5.26	0.00	1.02	1.02	0.797229	1.000000
K	intron_retention	NUP85	chr17	+	chr17:73229064-73229152				chr17:73229063-73229064;chr17:73229152-73229153		17.65	17.72	14.29	15.38	10.45	16.67	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.89	NA	14.94	13.04	14.29	9.52	18.33	8.33	22.03	0.00	6.67	8.70	11.48	16.67	25.00	11.76	10.71	11.11	10.81	10.34	12.82	13.04	0.21	0.837454	1.000000
K	intron_retention	HPS1	chr10	-	chr10:100189400-100190327				chr10:100189399-100189400;chr10:100190327-100190328		9.09	11.76	5.56	7.69	4.00	NA	6.25	0.00	0.00	0.00	3.57	0.00	5.26	0.00	12.50	0.00	0.00	0.00	11.76	3.23	9.09	8.82	3.61	5.00	0.00	10.00	4.76	7.69	4.17	5.00	12.50	13.64	21.05	7.32	11.11	8.51	9.00	6.16	-2.84	0.847607	1.000000
K	intron_retention	TNFRSF1A	chr12	-	chr12:6439878-6440018				chr12:6439877-6439878;chr12:6440018-6440019		0.00	4.29	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.31	0.00	0.00	0.46	0.88	0.00	0.46	4.04	0.00	0.00	0.00	6.45	1.30	1.23	0.73	0.00	2.47	1.46	2.05	3.85	0.52	0.55	1.22	1.93	0.39	-1.54	0.830025	1.000000
K	intron_retention	UTP6	chr17	-	chr17:30205801-30207591				chr17:30205800-30205801;chr17:30207591-30207592		7.14	0.00	6.82	NA	0.00	NA	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	3.12	9.09	5.88	5.08	5.26	NA	0.00	0.00	0.00	5.77	2.56	0.00	0.00	NA	9.38	8.51	9.30	0.00	0.00	0.00	0.702770	1.000000
K	alternative_acceptor	DNAJC4	chr11	+	chr11:63999437-63999865;chr11:63999437-63999981	chr11:63999437-63999901		chr11:63999866-63999901;chr11:63999902-63999981	chr11:63999901-63999902;chr11:63999981-63999982		96.15	95.24	95.24	100.00	100.00	90.91	97.06	NA	90.91	94.44	96.67	93.75	96.88	90.91	82.35	100.00	96.67	85.71	100.00	93.75	94.44	93.33	89.47	100.00	100.00	87.50	97.30	100.00	97.30	100.00	100.00	100.00	95.00	100.00	96.77	100.00	96.97	93.75	-3.22	0.167956	0.660713
N	cassette	TBC1D15	chr12	+	chr12:72311578-72314510	chr12:72311578-72312230;chr12:72312329-72314510		chr12:72312231-72312328			100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.91	97.83	100.00	100.00	96.30	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	CD151	chr11	+	chr11:837613-837941	chr11:837619-837941		chr11:837613-837618	chr11:837612-837613		92.59	100.00	100.00	100.00	93.75	100.00	93.64	92.31	100.00	91.67	94.34	86.96	97.45	100.00	93.65	93.57	96.84	95.08	100.00	100.00	96.30	94.87	93.33	87.50	100.00	92.73	93.44	94.83	96.30	95.65	93.75	94.12	95.89	95.16	91.18	93.75	98.72	93.24	-5.48	0.197869	0.570816
N	alternative_acceptor		chr8	+	chr8:24199271-24200185;chr8:24199271-24200501	chr8:24199271-24200613		chr8:24200186-24200501;chr8:24200502-24200613	chr8:24200501-24200502;chr8:24200613-24200614		87.18	81.82	86.78	NA	94.44	NA	100.00	100.00	100.00	93.55	100.00	66.67	100.00	100.00	94.12	100.00	100.00	82.35	92.86	94.52	88.14	97.92	97.46	88.57	NA	88.89	89.03	100.00	97.87	100.00	96.08	92.27	97.22	96.70	97.50	95.45	97.22	95.30	-1.92	0.987673	0.995150
K	intron_retention	CWC15	chr11	-	chr11:94704230-94704538				chr11:94704229-94704230;chr11:94704538-94704539		5.36	4.96	4.00	2.13	4.67	3.51	0.00	0.00	1.72	0.00	1.92	0.00	0.00	0.00	0.00	1.20	0.91	0.00	2.82	3.17	4.85	0.00	3.36	1.69	4.55	0.00	2.99	4.88	2.80	1.32	4.55	5.00	2.47	5.26	3.23	2.47	2.65	1.58	-1.06	0.338555	1.000000
N	cassette	DGKZ	chr11	+	chr11:46399780-46400752;chr11:46400051-46400752	chr11:46399780-46400540,chr11:46400051-46400540;chr11:46400662-46400752		chr11:46400541-46400661			100.00	96.86	98.28	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.97	97.47	100.00	100.00	100.00	94.25	100.00	100.00	NA	97.83	NA	100.00	100.00	98.04	100.00	100.00	100.00	99.02	100.00	0.98	0.262435	0.709176
K	jcn_only_AA	NCOR1	chr17	-	chr17:15938256-15942746	chr17:15938259-15942746		chr17:15938256-15938258	chr17:15938255-15938256		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	95.12	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.75	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.722419	0.877224
N	intron_retention	PNISR	chr6	-	chr6:99848188-99848419				chr6:99848187-99848188;chr6:99848419-99848420		56.00	44.44	43.10	42.11	32.08	50.00	NA	NA	0.00	NA	0.00	NA	17.65	NA	7.14	10.00	5.88	NA	35.71	37.50	38.10	46.15	31.43	41.18	33.33	31.25	35.94	26.67	48.39	35.00	39.13	38.10	31.71	38.89	53.57	48.28	33.33	38.31	4.98	0.697143	1.000000
K	alternative_acceptor	ADAM8	chr10	-	chr10:135084569-135084703	chr10:135084575-135084703		chr10:135084569-135084574	chr10:135084568-135084569		89.86	100.00	94.20	NA	100.00	NA	100.00	94.23	94.55	100.00	100.00	92.73	93.33	97.62	100.00	100.00	96.59	100.00	NA	94.29	100.00	84.21	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	93.33	90.48	100.00	95.96	-4.04	0.346995	0.709013
K	coord_cassette	CH17-270A2.2,POLR3GL	chr1	-	chr1:145457605-145460096	chr1:145457605-145457934;chr1:145458004-145459651;chr1:145459782-145460096		chr1:145457935-145458003;chr1:145459652-145459781			100.00	95.65	94.12	NA	95.45	NA	97.14	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	NA	100.00	NA	87.50	95.65	90.00	NA	93.10	NA	NA	96.88	93.75	NA	96.43	NA	96.00	93.18	100.00	100.00	95.65	78.57	97.14	96.59	-0.55	0.587282	0.759458
K	alternative_donor	FAM50A	chrX	+	chrX:153672694-153673980	chrX:153673258-153673980		chrX:153672694-153673257	chrX:153672693-153672694		2.78	4.26	2.27	4.00	1.89	0.00	1.61	0.00	0.00	2.82	1.25	0.00	1.54	0.00	2.63	1.35	1.25	0.00	0.00	3.12	1.72	1.67	3.17	4.00	0.00	4.17	5.36	1.41	2.17	1.82	5.00	3.12	1.16	5.32	4.49	4.21	1.35	2.95	1.60	0.336213	0.650093
K	intron_retention	MICAL1	chr6	-	chr6:109769167-109769405				chr6:109769166-109769167;chr6:109769405-109769406		12.00	7.69	22.50	NA	9.52	NA	4.44	1.89	0.00	0.00	0.00	0.00	0.00	4.08	5.26	0.00	0.00	0.00	NA	18.75	17.65	21.05	26.19	16.67	39.13	14.52	21.74	4.76	12.77	0.00	16.67	15.15	0.00	17.07	16.13	12.00	4.44	13.26	8.82	0.985217	1.000000
N	cassette	CLASRP	chr19	+	chr19:45571317-45572323;chr19:45570853-45572323	chr19:45571317-45571677,chr19:45570853-45571677;chr19:45571739-45572323		chr19:45571678-45571738			87.50	92.19	89.29	91.11	95.77	95.24	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.37	91.89	87.69	93.75	100.00	88.89	89.35	100.00	97.87	100.00	86.36	100.00	91.23	88.54	86.32	97.06	91.43	94.23	92.19	95.94	3.75	0.366880	0.709176
K	intron_retention	YPEL3	chr16	-	chr16:30104121-30106109				chr16:30104120-30104121;chr16:30106109-30106110		0.00	2.39	2.70	NA	2.04	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	1.37	2.56	2.03	NA	0.00	NA	5.37	0.00	1.86	NA	2.27	NA	2.17	3.23	3.23	NA	7.69	NA	1.88	0.00	-1.88	0.623580	1.000000
N	jcn_only_AA	IL13RA1	chrX	+	chrX:117910475-117914480;chrX:117910475-117925724;chrX:117910475-117925052	chrX:117910475-117938894		chrX:117914481-117925052;chrX:117925053-117925724;chrX:117925725-117938894	chrX:117925052-117925053;chrX:117925724-117925725;chrX:117938894-117938895		4.17	11.22	1.74	0.00	3.45	0.00	1.77	2.54	0.53	2.56	2.27	0.00	2.00	0.00	1.38	0.00	0.80	0.00	12.16	1.26	5.33	0.00	2.04	0.00	13.16	2.99	2.45	4.65	0.00	3.51	4.07	2.28	5.45	2.86	2.02	2.00	8.34	2.77	-5.57	0.060820	0.663989
K	intron_retention	RFXANK	chr19	+	chr19:19307856-19307994				chr19:19307855-19307856;chr19:19307994-19307995		4.35	4.55	10.26	4.76	4.62	6.06	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	3.17	6.45	5.19	9.09	13.79	NA	7.14	2.22	7.69	0.00	5.71	9.52	11.43	7.14	5.08	11.76	3.45	4.17	3.86	3.29	-0.57	0.271038	1.000000
K	intron_retention		chr15	+	chr15:91433715-91434211				chr15:91433714-91433715;chr15:91434211-91434212		8.33	11.11	12.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	14.29	NA	0.00	0.00	7.14	NA	0.00	NA	0.00	5.88	5.26	NA	10.00	3.23	0.00	0.00	0.00	0.630802	1.000000
N	jcn_only_AD	HNMT	chr2	+	chr2:138759914-138762701;chr2:138761703-138762701	chr2:138759765-138762701		chr2:138759765-138759913;chr2:138759914-138761702	chr2:138759764-138759765;chr2:138759913-138759914		83.33	100.00	85.71	NA	NA	NA	95.00	91.28	89.80	94.59	92.31	91.43	94.66	90.91	100.00	92.65	90.91	88.89	NA	88.89	86.67	78.57	80.00	77.78	66.67	83.78	87.92	88.24	84.75	100.00	87.50	81.03	81.82	89.47	88.46	83.33	94.66	88.19	-6.47	0.998175	0.999368
N	alternative_acceptor	DDX18	chr2	+	chr2:71658559-71660357	chr2:71658559-71660294		chr2:71660295-71660357	chr2:71660357-71660358		100.00	91.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.87	100.00	100.00	100.00	100.00	100.00	89.87	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	98.94	100.00	1.06	0.192418	0.660713
N	cassette	C19orf66	chr19	+	chr19:10202030-10202745	chr19:10202030-10202259;chr19:10202307-10202745		chr19:10202260-10202306			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	90.57	100.00	100.00	100.00	98.33	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	PSEN2	chr1	+	chr1:227079063-227079446	chr1:227079063-227079443		chr1:227079444-227079446	chr1:227079446-227079447		66.67	NA	70.97	68.42	65.22	75.00	66.67	69.49	69.01	63.16	60.98	69.57	54.55	69.44	65.38	61.29	63.16	43.75	75.00	68.75	48.65	69.77	63.64	75.00	75.00	76.67	61.54	66.67	56.25	62.50	60.00	64.29	69.23	66.67	60.00	63.89	69.23	69.09	-0.14	0.927116	0.977297
N	cassette	ATP5I	chr4	-	chr4:667191-680320;chr4:667191-668000;chr4:667191-676569	chr4:667191-667700;chr4:667756-680320,chr4:667756-676569,chr4:667756-668000		chr4:667701-667755			88.59	85.96	87.59	87.82	87.00	88.03	97.51	97.47	95.87	96.66	98.45	96.00	96.83	95.83	97.08	96.95	97.60	97.11	87.07	87.25	89.93	89.32	88.66	84.52	84.65	86.21	90.70	92.86	88.92	92.38	84.62	86.34	82.32	88.38	83.90	87.92	86.51	87.92	1.41	0.790163	0.936947
N	alternative_donor	TNFRSF1A	chr12	-	chr12:6440093-6442234;chr12:6440093-6442238	chr12:6440093-6440603		chr12:6440604-6442234;chr12:6442235-6442238	chr12:6442234-6442235;chr12:6442238-6442239		2.24	3.08	2.67	0.00	0.00	NA	0.00	0.65	0.85	0.00	0.84	0.00	0.82	0.62	0.95	1.06	0.72	1.43	5.26	1.90	5.26	2.94	2.11	4.17	5.88	1.80	1.88	1.32	1.30	2.94	3.23	3.29	5.56	3.70	3.49	4.42	4.17	1.85	-2.32	0.177169	0.563271
K	cassette	STAT5A	chr17	+	chr17:40456671-40458258	chr17:40456671-40457627;chr17:40457721-40458258		chr17:40457628-40457720			91.89	100.00	90.91	100.00	100.00	100.00	98.21	100.00	98.20	98.84	95.74	99.39	100.00	100.00	98.05	99.46	100.00	99.53	NA	100.00	100.00	94.34	94.44	97.46	100.00	97.30	93.88	96.77	100.00	98.85	100.00	93.75	NA	95.92	91.89	97.51	100.00	100.00	0.00	0.373423	0.709176
N	cassette	STK25	chr2	-	chr2:242440212-242447420;chr2:242439697-242447420	chr2:242440212-242440892,chr2:242439697-242440892;chr2:242441124-242447420		chr2:242440893-242441123			89.47	100.00	93.75	NA	100.00	NA	100.00	94.12	93.94	100.00	97.50	100.00	97.87	100.00	94.74	100.00	100.00	100.00	NA	100.00	NA	83.33	86.67	92.86	100.00	100.00	95.83	92.86	100.00	NA	NA	85.00	NA	95.00	96.43	92.31	100.00	100.00	0.00	0.273602	0.709176
N	jcn_only_AD	TRADD	chr16	-	chr16:67190572-67193576;chr16:67190572-67193740	chr16:67190572-67193727		chr16:67193577-67193727;chr16:67193728-67193740	chr16:67193727-67193728;chr16:67193740-67193741		4.00	5.88	0.00	NA	NA	0.00	15.38	5.56	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	NA	0.00	0.00	0.00	0.00	1.35	0.00	0.00	NA	NA	NA	0.00	2.94	0.00	-2.94	0.387306	0.657607
K	intron_retention		chr22	-	chr22:50962854-50963900				chr22:50962853-50962854;chr22:50963900-50963901		63.32	33.96	62.77	65.00	53.19	75.86	10.00	38.33	29.51	22.22	20.00	NA	35.00	75.68	62.00	50.00	28.00	NA	41.30	63.87	81.65	68.09	51.11	66.67	65.52	72.22	76.19	79.73	66.67	76.19	72.64	76.73	64.71	80.39	66.67	75.38	38.15	68.05	29.90	0.146954	1.000000
N	alternative_donor	SLC26A11	chr17	+	chr17:78225197-78226423;chr17:78225845-78226423;chr17:78226261-78226423	chr17:78225201-78226423		chr17:78225197-78225200;chr17:78225201-78225844;chr17:78225845-78226260	chr17:78225196-78225197;chr17:78225200-78225201;chr17:78225844-78225845		93.75	88.24	95.00	100.00	97.96	100.00	100.00	NA	NA	100.00	97.44	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	94.12	NA	95.65	96.97	100.00	100.00	95.65	91.67	100.00	97.67	100.00	84.38	88.24	95.24	96.00	94.12	96.23	100.00	93.94	-6.06	0.151685	0.563271
N	alternative_acceptor	PCNA	chr20	-	chr20:5096003-5096094	chr20:5096009-5096094		chr20:5096003-5096008	chr20:5096002-5096003		95.45	98.33	100.00	90.00	98.28	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	96.97	96.88	NA	100.00	NA	100.00	100.00	100.00	100.00	98.36	NA	88.24	95.20	90.52	94.12	100.00	100.00	99.16	98.48	-0.68	0.921845	0.978996
K	cassette	INPPL1	chr11	+	chr11:71948841-71949306	chr11:71948841-71949085;chr11:71949220-71949306		chr11:71949086-71949219			90.28	85.98	89.02	72.73	89.80	NA	100.00	100.00	97.56	93.75	95.83	NA	96.49	92.50	87.50	100.00	91.67	NA	86.49	85.71	85.42	82.61	87.95	90.00	88.37	92.45	92.96	90.00	92.42	NA	87.18	82.89	89.58	90.62	86.54	89.47	88.97	91.37	2.39	0.949856	0.987421
K	alternative_acceptor	MIEF1,NCAPH2	chr22	+	chr22:50960845-50960929	chr22:50960845-50960926		chr22:50960927-50960929	chr22:50960929-50960930		9.09	2.53	8.11	3.45	3.64	5.56	0.00	NA	NA	6.67	5.56	NA	3.57	NA	7.69	6.67	5.88	NA	5.56	8.57	5.26	4.17	6.00	0.00	4.94	0.00	3.33	10.53	8.33	8.33	4.65	3.45	3.03	0.00	6.67	10.71	3.30	6.61	3.31	0.365891	0.709013
K	intron_retention	ADRBK1	chr11	+	chr11:67051245-67051324				chr11:67051244-67051245;chr11:67051324-67051325		0.00	9.17	1.99	NA	1.79	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.00	12.50	1.39	0.00	0.00	2.11	0.00	6.10	0.00	0.55	0.00	2.56	NA	3.12	2.19	1.96	0.00	2.06	0.00	4.03	0.00	-4.03	0.498134	1.000000
N	jcn_only_AA	MAP3K11	chr11	-	chr11:65375169-65375392;chr11:65375235-65375392;chr11:65375165-65375392	chr11:65375288-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		94.25	93.51	95.61	100.00	100.00	NA	100.00	98.55	96.55	97.01	100.00	100.00	97.78	96.94	97.26	96.39	98.61	97.50	94.74	94.12	95.92	95.00	95.77	100.00	100.00	95.83	96.04	100.00	100.00	97.56	96.00	88.89	89.66	94.87	92.42	96.15	96.26	95.91	-0.34	1.000000	1.000000
N	jcn_only_AA	USE1	chr19	+	chr19:17326880-17326977	chr19:17326880-17326951		chr19:17326952-17326977	chr19:17326977-17326978		0.00	0.00	0.00	0.00	2.38	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.38	0.00	0.00	7.69	7.32	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.26	0.00	4.35	5.56	0.00	0.00	0.00	0.195436	0.663989
K	coord_cassette	WDR45	chrX	-	chrX:48933605-48935301	chrX:48933605-48934088;chrX:48934184-48934303;chrX:48934485-48935301		chrX:48934089-48934183;chrX:48934304-48934484			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	95.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	PPP6R1	chr19	-	chr19:55758478-55769802;chr19:55758478-55767042	chr19:55758478-55763461		chr19:55763462-55767042;chr19:55767043-55769802	chr19:55767042-55767043;chr19:55769802-55769803		0.00	6.67	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
N	alternative_donor	TMEM126B	chr11	+	chr11:85345324-85346710;chr11:85345652-85346710	chr11:85345221-85346710		chr11:85345221-85345323;chr11:85345324-85345651	chr11:85345220-85345221;chr11:85345323-85345324		4.55	0.00	0.00	NA	8.33	NA	0.00	0.00	0.00	5.56	0.00	4.17	3.33	0.00	4.00	0.00	6.90	11.11	0.00	5.26	5.56	0.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	9.09	0.00	3.85	0.00	7.69	2.94	2.33	0.00	0.00	0.00	0.454122	0.713347
N	alternative_donor	MVD	chr16	-	chr16:88723991-88724121;chr16:88723991-88724322	chr16:88723991-88724142		chr16:88724122-88724142;chr16:88724143-88724322	chr16:88724142-88724143;chr16:88724322-88724323		0.00	2.44	4.00	0.00	7.69	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.70	0.00	0.00	NA	0.00	6.67	2.17	4.35	5.41	0.00	5.56	5.00	2.56	0.00	3.57	0.00	5.56	5.56	0.00	0.00	2.63	4.00	0.00	2.50	2.50	0.362221	0.650093
K	cassette	MFF	chr2	+	chr2:228190144-228197134	chr2:228190144-228195341;chr2:228195563-228197134		chr2:228195342-228195562			75.00	85.71	85.00	NA	75.00	NA	82.93	82.86	79.25	65.79	72.55	64.71	69.57	78.95	78.57	65.79	65.45	61.11	78.57	69.23	70.00	81.82	69.44	81.82	NA	75.00	83.33	70.59	67.74	62.50	47.06	73.91	54.55	66.67	75.00	58.82	78.57	75.00	-3.57	0.712909	0.897327
N	jcn_only_AA	MGAT4B	chr5	-	chr5:179226176-179226505;chr5:179226251-179226505;chr5:179226308-179226505	chr5:179226311-179226505					98.61	100.00	94.55	91.30	92.42	NA	99.12	100.00	95.00	93.94	95.96	97.06	95.54	100.00	100.00	90.36	94.53	96.43	100.00	100.00	97.73	97.44	96.43	100.00	100.00	97.62	95.74	94.74	97.22	91.30	100.00	94.44	100.00	95.52	96.20	95.38	100.00	100.00	0.00	0.763267	0.895110
K	cassette	NAPA	chr19	-	chr19:47998854-48006679;chr19:47998854-48018099	chr19:47998854-48003889;chr19:48004007-48006679,chr19:48004007-48018099		chr19:48003890-48004006			96.88	100.00	97.47	100.00	97.96	100.00	96.79	97.40	94.78	95.95	95.45	97.26	97.22	97.98	97.19	98.05	96.79	98.03	NA	96.34	97.30	97.40	98.18	98.67	83.33	97.67	93.10	99.29	95.18	97.19	98.08	100.00	91.67	98.79	99.01	98.67	96.79	97.53	0.74	0.290316	0.709176
K	intron_retention	PER1	chr17	-	chr17:8045777-8045966				chr17:8045776-8045777;chr17:8045966-8045967		3.57	0.00	6.06	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	NA	NA	NA	0.00	6.25	0.00	NA	0.00	NA	0.00	0.00	3.57	NA	NA	NA	7.89	6.06	17.65	6.67	0.00	NA	0.00	1.78	1.78	0.785949	1.000000
K	cassette	FAM204A	chr10	-	chr10:120070826-120085665	chr10:120070826-120081816;chr10:120081924-120085665		chr10:120081817-120081923			0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
K	cassette	EMC8	chr16	-	chr16:85813474-85814816	chr16:85813474-85813984;chr16:85814080-85814816		chr16:85813985-85814079			67.86	68.18	59.38	73.91	69.77	60.00	54.55	78.57	59.09	69.57	65.22	82.61	70.73	75.00	50.00	69.35	71.43	57.69	64.86	68.18	51.22	67.86	59.52	85.71	55.56	71.43	51.85	60.87	69.70	68.75	68.97	53.49	50.94	74.19	61.76	71.74	60.21	70.20	9.99	0.021602	0.393979
N	jcn_only_AA	AP1B1	chr22	-	chr22:29762177-29763195;chr22:29762914-29763195;chr22:29755949-29763195	chr22:29759096-29763195					100.00	100.00	100.00	NA	NA	NA	100.00	93.10	100.00	100.00	97.86	100.00	98.72	100.00	100.00	98.21	100.00	100.00	NA	100.00	NA	100.00	95.08	91.67	100.00	100.00	94.74	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.492126	0.749150
N	cassette	ARAP1	chr11	-	chr11:72421633-72422474	chr11:72421633-72422065;chr11:72422187-72422474		chr11:72422066-72422186			96.74	90.57	93.92	NA	NA	NA	100.00	98.41	100.00	97.47	100.00	100.00	100.00	98.51	97.20	100.00	98.20	100.00	NA	96.81	100.00	100.00	95.38	89.66	100.00	97.65	95.10	97.14	100.00	95.00	90.91	93.02	100.00	93.85	95.70	94.44	100.00	97.23	-2.77	0.491665	0.776514
N	cassette	TFCP2	chr12	-	chr12:51489824-51493437	chr12:51489824-51492558;chr12:51492702-51493437		chr12:51492559-51492701			100.00	95.45	100.00	NA	93.33	NA	100.00	100.00	94.74	NA	92.59	NA	96.67	91.67	100.00	85.71	100.00	NA	100.00	90.91	100.00	NA	100.00	NA	88.89	100.00	93.75	NA	96.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.34	100.00	1.66	0.920600	0.979285
K	cassette	BID	chr22	-	chr22:18222255-18257146;chr22:18226780-18257146	chr22:18226780-18232870,chr22:18222255-18232870;chr22:18232941-18257146		chr22:18232871-18232940			56.67	65.79	58.33	70.27	84.00	73.68	90.74	88.64	91.18	89.66	87.50	90.24	85.25	89.13	85.11	90.42	89.32	84.21	92.59	80.43	78.95	86.15	80.33	87.04	40.00	68.89	63.79	81.82	89.22	84.62	70.00	61.11	57.58	83.56	83.72	82.19	75.52	75.22	-0.31	0.726800	0.904885
K	jcn_only_AA	COG4	chr16	-	chr16:70530283-70531123	chr16:70530335-70531123		chr16:70530283-70530334	chr16:70530282-70530283		91.67	88.10	90.57	NA	91.30	NA	100.00	100.00	100.00	100.00	100.00	NA	95.56	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	NA	90.48	NA	NA	100.00	89.74	NA	92.86	NA	88.24	93.02	72.73	100.00	91.67	86.36	91.67	100.00	8.33	0.222359	0.663989
K	cassette	LGALS9	chr17	+	chr17:25969375-25972886;chr17:25970647-25972886	chr17:25969375-25972339,chr17:25970647-25972339;chr17:25972376-25972886		chr17:25972340-25972375			91.14	93.90	95.00	84.62	77.91	90.00	96.27	97.14	98.32	92.27	92.69	96.17	76.26	84.36	80.38	71.98	70.16	81.23	87.27	88.77	85.26	81.08	81.52	90.00	56.76	79.06	69.44	67.24	60.48	76.12	89.39	84.09	77.19	80.60	68.97	81.18	82.23	89.08	6.85	0.313583	0.709176
K	jcn_only_AA	B3GAT3	chr11	-	chr11:62383713-62383977;chr11:62383709-62383977	chr11:62383272-62383977		chr11:62383272-62383708;chr11:62383709-62383712	chr11:62383271-62383272;chr11:62383708-62383709		88.89	100.00	95.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.46	81.48	100.00	87.50	91.67	75.00	100.00	90.91	94.38	94.12	98.00	95.00	87.10	84.91	96.59	93.10	97.30	92.86	100.00	89.90	-10.10	0.055940	0.663989
N	cassette	PLEKHM2	chr1	+	chr1:16057753-16058844;chr1:16057753-16058928	chr1:16057753-16058383;chr1:16058544-16058844,chr1:16058544-16058928		chr1:16058384-16058543			97.83	97.44	96.08	100.00	99.22	94.87	100.00	100.00	100.00	98.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.40	100.00	96.48	97.61	97.37	100.00	100.00	98.17	99.19	100.00	99.22	95.60	96.53	94.05	96.98	96.77	97.70	100.00	99.20	-0.80	0.964252	0.990507
K	jcn_only_AA	TPRKB	chr2	-	chr2:73956433-73957686	chr2:73957157-73957686		chr2:73956433-73957156	chr2:73956432-73956433		100.00	98.15	100.00	100.00	100.00	94.87	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.44	94.29	85.71	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	96.25	100.00	100.00	100.00	100.00	100.00	0.00	0.204090	0.663989
N	alternative_acceptor		chr5	+	chr5:150646475-150646561;chr5:150646475-150648472;chr5:150646475-150660576;chr5:150646475-150649710	chr5:150646475-150646856		chr5:150646562-150646856;chr5:150646857-150648472;chr5:150648473-150649710;chr5:150649711-150660576	chr5:150646856-150646857;chr5:150648472-150648473;chr5:150649710-150649711;chr5:150660576-150660577		100.00	98.84	100.00	96.93	98.21	96.43	100.00	100.00	100.00	98.95	99.47	99.34	100.00	100.00	100.00	100.00	100.00	100.00	94.67	100.00	99.13	100.00	100.00	100.00	97.47	100.00	100.00	100.00	98.89	98.15	98.84	100.00	97.31	100.00	100.00	100.00	98.16	100.00	1.84	0.087800	0.586065
K	cassette	ATP6V1E1	chr22	-	chr22:18096087-18111368	chr22:18096087-18102226;chr22:18102293-18111368		chr22:18102227-18102292			97.85	100.00	96.40	100.00	98.82	100.00	98.96	98.68	96.88	98.56	99.28	98.77	98.56	97.42	98.13	99.60	99.24	98.86	100.00	98.26	98.21	98.04	98.80	100.00	100.00	98.72	97.65	99.20	97.76	100.00	96.25	97.33	94.74	98.20	99.04	98.17	99.48	98.06	-1.42	0.386281	0.709410
K	intron_retention		chr15	+	chr15:55647177-55647483				chr15:55647176-55647177;chr15:55647483-55647484		15.38	41.18	13.33	NA	30.00	63.64	0.00	0.00	11.76	NA	NA	NA	7.14	0.00	0.00	NA	NA	NA	39.13	0.00	24.14	NA	NA	NA	62.50	5.26	21.21	NA	9.09	NA	7.69	8.33	45.83	10.00	14.29	18.18	40.16	2.63	-37.52	0.255050	1.000000
N	cassette	VPS29	chr12	-	chr12:110934009-110939853;chr12:110933993-110939853;chr12:110934009-110937261;chr12:110934009-110937339	chr12:110933993-110936624,chr12:110934009-110936624;chr12:110936665-110939853,chr12:110936665-110937261,chr12:110936665-110937339		chr12:110936625-110936664			5.26	2.50	1.37	11.76	9.26	8.00	3.42	5.22	8.08	12.73	7.53	8.77	3.33	5.10	7.92	6.36	6.98	7.69	0.00	1.72	3.80	3.39	5.05	3.37	0.00	5.41	2.86	5.33	3.00	3.53	2.56	1.45	3.70	1.59	3.80	2.56	2.92	5.16	2.25	0.059755	0.607257
N	alternative_acceptor	ARAP1	chr11	-	chr11:72404512-72404736	chr11:72404516-72404736		chr11:72404512-72404515	chr11:72404511-72404512		92.71	88.89	95.31	96.43	93.51	90.00	97.26	98.28	100.00	100.00	100.00	NA	98.63	97.22	100.00	96.15	100.00	NA	92.21	93.75	94.12	90.62	93.10	88.24	94.74	95.83	93.51	95.56	95.24	100.00	91.86	93.44	91.86	92.45	91.25	93.88	93.47	94.79	1.31	0.592715	0.844088
K	intron_retention	SAT2	chr17	-	chr17:7530363-7530460				chr17:7530362-7530363;chr17:7530460-7530461		50.56	34.25	49.18	33.33	36.36	26.67	3.33	3.25	0.00	0.00	1.72	0.00	6.98	7.89	11.43	6.90	5.56	3.33	47.73	44.64	28.00	61.54	41.67	28.57	20.37	21.88	33.80	25.00	15.15	21.74	61.54	53.03	50.82	41.30	48.65	45.45	27.31	33.26	5.95	0.957169	1.000000
N	jcn_only_AA	CD33	chr19	+	chr19:51738509-51738772;chr19:51738509-51738849	chr19:51738509-51738785		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		8.33	0.00	0.00	NA	0.00	NA	3.67	0.00	4.76	0.00	0.00	5.08	3.92	NA	7.69	5.41	3.41	11.76	2.78	8.70	0.00	0.00	3.70	0.00	0.00	0.00	3.49	5.26	6.56	0.00	17.65	7.50	4.76	4.17	11.76	7.25	3.22	8.33	5.11	0.255471	0.663989
N	jcn_only_AD	RYK,TPRA1	chr3	-	chr3:127294894-127295451;chr3:127294894-127295459	chr3:127294894-127295027		chr3:127295028-127295451;chr3:127295452-127295459	chr3:127295451-127295452;chr3:127295459-127295460		3.77	1.89	0.00	9.30	2.08	0.00	0.00	0.00	0.00	2.16	2.33	1.26	0.97	0.00	0.00	4.42	2.84	2.42	0.00	4.55	0.00	5.13	5.61	5.05	0.00	0.00	0.00	6.54	3.45	5.05	6.41	8.57	0.00	5.17	0.00	3.16	0.00	1.89	1.89	0.151328	0.657607
N	jcn_only_AD	MYL6B	chr12	+	chr12:56549377-56551251;chr12:56549386-56551251;chr12:56549814-56551251	chr12:56549278-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		7.41	5.33	4.26	0.00	2.17	0.00	0.00	0.00	2.86	6.25	9.38	0.00	2.94	7.69	3.45	0.00	4.76	NA	2.90	5.00	2.68	9.09	0.00	0.00	0.00	5.26	3.28	0.00	0.00	4.35	15.00	6.25	7.25	0.00	0.00	8.00	2.92	6.33	3.42	0.153509	0.657607
K	alternative_acceptor	CELF1	chr11	-	chr11:47492442-47493742;chr11:47490444-47493742	chr11:47493655-47493742		chr11:47490444-47492441;chr11:47492442-47493654	chr11:47490443-47490444;chr11:47492441-47492442		84.21	84.62	95.38	NA	30.00	92.86	97.50	77.78	95.65	97.14	97.37	95.65	94.59	70.91	94.94	95.83	97.14	95.83	82.35	68.42	95.24	80.00	90.91	87.50	88.37	89.29	93.55	92.31	78.95	90.00	85.71	96.43	90.91	92.59	93.94	96.97	89.64	81.00	-8.64	0.035759	0.560254
K	intron_retention		chr1	+	chr1:46032693-46033653				chr1:46032692-46032693;chr1:46033653-46033654		5.38	14.02	11.96	5.71	9.22	2.17	1.08	0.74	0.00	1.88	1.16	0.44	1.62	0.96	6.98	0.72	2.21	0.00	10.43	9.28	5.70	6.82	10.14	6.12	14.43	6.67	11.69	8.13	10.18	2.88	8.77	10.00	12.26	6.55	11.96	4.18	11.34	6.03	-5.32	0.755922	1.000000
K	alternative_donor	SEPW1	chr19	+	chr19:48282072-48283981	chr19:48283114-48283981		chr19:48282072-48283113	chr19:48282071-48282072		46.15	24.44	42.35	21.43	21.21	0.00	2.13	1.69	1.11	2.63	2.33	4.35	1.79	1.33	1.53	2.27	3.57	0.00	13.04	40.00	6.38	50.00	42.00	47.06	28.00	19.00	27.08	30.43	23.53	21.05	30.00	37.93	12.50	56.25	41.30	51.28	12.77	24.50	11.73	0.326183	0.650093
K	cassette	UBE2K	chr4	+	chr4:39700011-39747371	chr4:39700011-39739039;chr4:39739134-39747371		chr4:39739040-39739133			95.83	100.00	93.33	100.00	100.00	NA	100.00	100.00	98.65	98.11	98.10	96.00	98.51	97.37	97.75	97.46	98.35	98.08	100.00	100.00	97.14	100.00	97.96	97.22	NA	96.36	94.92	100.00	93.48	100.00	94.44	100.00	92.86	98.59	97.92	96.72	100.00	96.87	-3.13	0.589387	0.844083
K	alternative_donor	ACADVL	chr17	+	chr17:7127178-7127286	chr17:7127195-7127286		chr17:7127178-7127194	chr17:7127177-7127178		92.57	91.67	87.91	98.72	98.83	100.00	94.00	93.33	88.71	93.75	90.84	92.37	91.60	89.29	92.13	92.54	91.35	89.60	82.64	85.42	86.13	96.88	95.17	96.00	98.20	91.30	94.20	94.17	96.17	94.96	82.61	82.89	91.80	95.51	95.08	97.37	91.73	90.30	-1.44	0.366663	0.650093
K	intron_retention		chr11	-	chr11:66105361-66105713				chr11:66105360-66105361;chr11:66105713-66105714		2.53	1.64	3.90	1.35	1.11	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	1.75	3.17	3.82	3.03	2.86	6.06	2.73	4.44	4.88	2.13	2.25	3.12	3.09	4.84	4.19	1.72	3.45	4.62	1.69	2.81	1.11	0.969530	1.000000
K	intron_retention	INTS1	chr7	-	chr7:1512023-1512707				chr7:1512022-1512023;chr7:1512707-1512708		12.50	3.45	3.85	3.85	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.27	0.00	1.49	0.00	0.00	NA	1.33	0.00	4.65	0.00	0.00	3.45	2.86	4.65	2.20	6.25	6.06	7.14	1.30	0.00	-1.30	0.763273	1.000000
K	cassette	C19orf53	chr19	+	chr19:13885389-13888865	chr19:13885389-13885465;chr19:13885522-13888865		chr19:13885466-13885521			97.44	98.73	97.12	97.67	97.18	96.74	99.42	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.31	94.52	99.02	100.00	97.87	100.00	99.08	93.48	97.39	100.00	99.45	98.02	100.00	100.00	97.86	98.88	98.21	97.94	99.19	98.72	-0.47	0.278115	0.709176
N	alternative_donor	MRPL52	chr14	+	chr14:23299150-23299258;chr14:23299158-23299258	chr14:23299154-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.56	0.00	0.00	0.00	8.33	5.06	0.00	2.56	0.00	0.00	0.00	5.00	10.00	4.00	0.00	0.00	0.00	8.16	4.55	0.00	0.00	0.00	0.00	0.00	0.527539	0.775000
K	intron_retention		chr22	-	chr22:24313813-24315956				chr22:24313812-24313813;chr22:24315956-24315957		13.33	4.67	12.50	6.06	3.82	4.89	0.00	2.04	2.99	2.36	2.53	0.00	2.11	1.79	4.65	4.27	1.44	1.27	7.46	9.52	3.70	4.65	4.41	9.76	1.94	11.76	6.67	7.89	7.06	4.69	8.33	10.87	5.71	6.78	5.88	5.62	3.39	8.93	5.54	0.403146	1.000000
N	cassette	PMF1,PMF1-BGLAP	chr1	+	chr1:156182968-156206078;chr1:156195460-156203418;chr1:156182968-156203418	chr1:156182968-156202110,chr1:156195460-156202110;chr1:156202217-156206078,chr1:156202217-156203418		chr1:156202111-156202216			100.00	93.94	89.19	100.00	91.67	NA	95.56	100.00	92.00	97.14	94.83	100.00	100.00	100.00	96.67	100.00	100.00	100.00	85.71	100.00	95.00	92.31	91.67	NA	83.33	100.00	92.00	100.00	92.86	91.67	NA	94.44	100.00	100.00	93.10	100.00	94.75	100.00	5.25	0.062854	0.621473
K	cassette	IRAK1	chrX	-	chrX:153278130-153279492	chrX:153278130-153278493;chrX:153278795-153279492		chrX:153278494-153278794			95.83	100.00	94.87	93.75	90.57	NA	100.00	100.00	100.00	100.00	98.35	96.36	100.00	100.00	96.15	98.35	100.00	100.00	100.00	97.78	100.00	97.62	97.06	96.97	100.00	100.00	100.00	100.00	98.75	95.24	92.50	97.30	100.00	92.54	96.30	97.92	100.00	98.89	-1.11	0.121780	0.709176
K	alternative_donor	TMEM150B	chr19	-	chr19:55824424-55828153	chr19:55824424-55828142		chr19:55828143-55828153	chr19:55828153-55828154		4.71	12.50	10.59	0.00	0.00	5.26	1.75	3.31	1.27	6.25	1.72	1.64	1.82	3.02	4.11	3.45	3.70	2.78	4.76	4.29	3.03	NA	11.11	6.25	18.75	6.17	4.88	10.00	3.70	4.76	3.70	4.60	6.25	9.52	16.00	7.35	5.50	4.00	-1.51	0.268746	0.644832
K	jcn_only_AD	TMEM205	chr19	-	chr19:11456305-11456883;chr19:11456305-11456683	chr19:11456305-11456802		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		94.74	92.50	92.72	94.74	90.74	91.18	93.42	96.43	96.43	88.89	92.31	88.00	96.43	96.88	94.51	93.88	91.43	92.86	93.10	93.18	93.28	91.49	92.75	81.58	100.00	96.43	93.80	92.11	89.55	89.71	90.24	93.33	88.14	88.10	90.91	92.59	93.26	95.59	2.33	0.719767	0.855198
K	intron_retention	HPS1	chr10	-	chr10:100189400-100189547				chr10:100189399-100189400;chr10:100189547-100189548		11.36	31.25	4.88	12.50	6.67	9.09	1.67	0.00	0.00	0.00	0.00	0.00	1.14	2.50	5.45	1.89	1.33	0.00	20.00	3.03	10.34	12.12	7.69	6.25	0.00	9.52	9.30	12.90	3.77	3.45	7.69	5.36	16.22	8.33	7.04	4.35	8.95	5.36	-3.58	0.650183	1.000000
N	jcn_only_AD		chr16	-	chr16:67188863-67189002	chr16:67188863-67188998		chr16:67188999-67189002	chr16:67189002-67189003		100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	96.00	98.21	97.71	100.00	100.00	100.00	100.00	96.30	95.56	100.00	92.00	96.30	100.00	100.00	98.11	100.00	100.00	96.91	100.00	97.96	100.00	94.12	100.00	95.70	100.00	100.00	0.00	0.571459	0.784619
N	cassette	DDX5	chr17	-	chr17:62496445-62498127	chr17:62496445-62496666;chr17:62496892-62498127		chr17:62496667-62496891			99.36	100.00	99.71	100.00	100.00	93.33	100.00	97.56	95.69	97.52	98.90	98.28	99.26	98.27	96.25	97.45	98.82	97.34	100.00	99.32	99.01	100.00	99.59	99.62	100.00	100.00	99.37	99.52	100.00	99.52	99.63	99.82	100.00	99.66	99.63	99.58	100.00	99.34	-0.66	0.073731	0.636536
N	jcn_only_AD	PDLIM7	chr5	-	chr5:176911192-176916393;chr5:176911192-176911839	chr5:176911192-176915068					100.00	100.00	98.60	100.00	99.44	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.00	99.07	99.31	100.00	97.56	100.00	100.00	98.06	100.00	100.00	100.00	90.91	99.05	97.01	100.00	100.00	100.00	100.00	100.00	99.53	-0.47	0.527212	0.754861
K	intron_retention	WDR11	chr10	+	chr10:122665534-122666287				chr10:122665533-122665534;chr10:122666287-122666288		27.27	6.25	31.37	NA	11.11	NA	2.17	6.25	4.76	0.00	3.96	0.00	3.45	7.14	12.82	0.00	3.75	0.00	7.69	20.93	14.29	19.35	15.00	12.82	NA	21.31	22.81	17.86	16.67	11.76	16.67	25.00	13.33	21.43	23.53	16.67	6.25	18.80	12.55	0.330736	1.000000
N	alternative_acceptor	COPZ1,TMEM5	chr12	+	chr12:54741836-54743403	chr12:54741836-54742771		chr12:54742772-54743403	chr12:54743403-54743404		3.77	0.00	15.25	4.35	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	1.33	5.88	5.88	5.56	0.00	3.33	7.14	0.00	1.72	2.13	0.00	5.36	0.00	6.12	4.23	8.47	0.00	1.67	1.67	0.076784	0.585944
N	alternative_acceptor	ADAP1,COX19	chr7	-	chr7:938899-939055;chr7:938815-939055	chr7:938917-939055		chr7:938815-938898;chr7:938899-938916	chr7:938814-938815;chr7:938898-938899		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	DDX3X	chrX	+	chrX:41206266-41206570;chrX:41206266-41206567	chrX:41206266-41206564		chrX:41206565-41206567;chrX:41206568-41206570	chrX:41206567-41206568;chrX:41206570-41206571		60.75	54.17	63.30	57.14	70.59	65.52	74.31	72.19	73.28	75.00	72.78	70.97	73.50	68.72	67.52	67.47	73.53	71.49	60.00	63.21	62.96	65.26	67.09	64.17	NA	60.78	63.24	72.63	70.73	71.08	63.93	60.54	51.85	59.07	63.20	61.80	60.00	63.57	3.57	0.688016	0.863511
K	intron_retention	UBAP1	chr9	+	chr9:34250758-34251389				chr9:34250757-34250758;chr9:34251389-34251390		2.67	0.00	3.73	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32	2.56	1.85	1.11	1.92	NA	0.00	3.45	2.04	0.00	0.00	5.56	3.57	0.00	1.15	1.45	4.05	0.00	0.66	0.66	0.263379	1.000000
N	cassette	ETHE1	chr19	-	chr19:44015719-44031248	chr19:44015719-44030666;chr19:44030812-44031248		chr19:44030667-44030811			100.00	85.11	100.00	100.00	100.00	77.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	87.10	92.86	100.00	92.31	100.00	92.86	100.00	100.00	100.00	100.00	91.89	90.00	100.00	100.00	81.58	91.43	100.00	100.00	93.55	100.00	6.45	0.129134	0.709176
N	alternative_donor	PRKCSH	chr19	+	chr19:11558323-11558507;chr19:11558413-11558507	chr19:11558434-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		27.27	52.63	46.15	NA	36.36	NA	30.00	36.36	NA	37.50	40.00	33.33	40.00	NA	NA	NA	41.67	NA	50.00	40.00	40.00	NA	46.67	NA	40.00	33.33	54.55	NA	37.50	35.71	50.00	46.67	50.00	NA	50.00	43.75	45.00	36.36	-8.64	0.249708	0.620952
N	jcn_only_AA	GRK6	chr5	+	chr5:176860678-176860914	chr5:176860678-176860856		chr5:176860857-176860914	chr5:176860914-176860915		0.00	21.43	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	11.11	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	6.38	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.391002	0.663989
K	alternative_first_exon	LINC01578,RP11-437B10.1	chr15	+	chr15:93428385-93428744,chr15:93428348-93428744;chr15:93426774-93428744;chr15:93426417-93428744	chr15:93427009-93428744	chr15:93426643-93426773;chr15:93425937-93426416	chr15:93426815-93427008			40.91	51.85	43.21	50.00	59.26	NA	40.00	43.48	29.55	44.83	36.00	41.67	38.89	36.84	26.53	48.28	35.00	44.44	42.86	52.94	32.35	59.26	46.34	59.09	33.33	42.86	37.25	40.00	43.75	47.06	57.14	47.06	38.89	52.78	54.29	60.00	39.45	43.17	3.73	0.269666	0.482310
K	alternative_acceptor	APOC1,TRIM28	chr19	+	chr19:59059081-59059168	chr19:59059081-59059158		chr19:59059159-59059168	chr19:59059168-59059169		100.00	100.00	98.31	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	98.28	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	PARP6	chr15	-	chr15:72533899-72534241				chr15:72533898-72533899;chr15:72534241-72534242		3.39	4.17	0.00	1.64	0.00	1.52	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	2.56	2.35	5.26	1.54	0.00	0.00	3.12	0.00	0.00	0.00	2.38	6.02	1.11	1.52	3.39	0.00	1.54	0.00	3.12	3.12	0.763672	1.000000
K	jcn_only_AD	GMIP,SLC7A9	chr19	-	chr19:19752861-19753345	chr19:19752861-19753343		chr19:19753344-19753345	chr19:19753345-19753346		85.71	75.00	72.31	NA	NA	NA	79.73	76.06	87.27	80.68	80.39	74.51	80.81	82.53	93.59	78.31	81.45	79.03	NA	72.22	NA	82.35	71.88	76.00	92.31	74.60	81.48	78.95	74.07	75.00	84.62	73.17	NA	81.08	82.22	78.95	80.27	79.30	-0.98	0.563892	0.779248
K	coord_cassette	TMEM14C	chr6	+	chr6:10723475-10726139	chr6:10723475-10724802;chr6:10724867-10725193;chr6:10725271-10726139		chr6:10724803-10724866;chr6:10725194-10725270			92.86	100.00	94.03	95.24	96.49	NA	100.00	100.00	100.00	100.00	98.11	100.00	98.40	100.00	100.00	100.00	100.00	100.00	100.00	94.74	97.56	98.21	96.58	98.41	NA	100.00	95.71	100.00	96.55	100.00	100.00	92.06	100.00	100.00	97.56	100.00	100.00	100.00	0.00	0.252101	0.643829
N	alternative_acceptor	MAP4K2	chr11	-	chr11:64557258-64557360	chr11:64557280-64557360		chr11:64557258-64557279	chr11:64557257-64557258		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.26	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	PLIN2	chr9	-	chr9:19108761-19116356;chr9:19108746-19116356	chr9:19108724-19116356					0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	2.60	0.00	0.00	0.00	0.00	NA	0.00	1.30	1.30	0.218558	0.663989
N	alternative_donor	PDPN	chr1	+	chr1:13940907-13942399;chr1:13940911-13942399	chr1:13940901-13942399		chr1:13940901-13940906;chr1:13940907-13940910	chr1:13940900-13940901;chr1:13940906-13940907		54.60	70.37	50.33	54.29	56.00	45.00	NA	53.04	58.95	59.09	66.67	NA	60.00	50.94	55.98	50.00	65.31	59.09	45.95	51.93	55.31	50.00	59.42	42.59	55.56	48.41	53.92	46.05	49.09	53.91	52.73	52.40	66.67	45.83	62.50	42.11	60.00	52.33	-7.67	0.145385	0.560769
K	alternative_donor	TMEM255B	chr13	+	chr13:114504786-114507857	chr13:114506306-114507857		chr13:114504786-114506305	chr13:114504785-114504786		0.00	5.41	NA	0.00	4.55	6.25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2.50	0.00	NA	0.00	0.00	0.00	5.56	7.69	NA	NA	6.25	0.00	5.00	0.00	4.17	6.25	9.09	4.35	4.79	2.50	-2.29	0.578270	0.799662
K	cassette	CCS	chr11	+	chr11:66360772-66366586	chr11:66360772-66361112;chr11:66361186-66366586		chr11:66361113-66361185			97.62	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.56	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	88.89	NA	100.00	100.00	100.00	100.00	0.00	0.474200	0.770157
N	intron_retention		chr17	-	chr17:62775198-62775301				chr17:62775197-62775198;chr17:62775301-62775302		76.19	92.00	96.15	NA	89.74	100.00	NA	NA	NA	NA	NA	NA	NA	90.00	90.91	NA	100.00	NA	88.57	94.12	83.33	NA	91.18	NA	93.75	85.00	88.24	NA	87.50	NA	100.00	88.89	89.47	84.62	90.00	76.47	90.73	90.00	-0.73	0.987960	1.000000
K	alternative_donor	RHOC	chr1	-	chr1:113247791-113249699;chr1:113247791-113249454	chr1:113247791-113249353		chr1:113249354-113249454;chr1:113249455-113249699	chr1:113249454-113249455;chr1:113249699-113249700		3.08	0.00	7.32	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.85	2.13	2.99	4.76	3.33	0.00	2.38	3.12	0.00	0.00	0.00	1.72	2.50	0.00	0.00	0.00	2.15	0.00	2.05	2.05	0.036655	0.352241
K	cassette	SEC11A	chr15	-	chr15:85234876-85259255	chr15:85234876-85257961;chr15:85258098-85259255		chr15:85257962-85258097			1.61	3.51	1.11	3.23	5.13	NA	4.13	2.65	1.49	5.33	5.63	4.55	5.24	0.00	3.20	4.65	5.64	7.23	0.00	0.00	0.00	4.88	5.52	4.48	0.00	1.79	1.20	4.94	8.65	4.17	0.00	1.54	0.00	4.08	5.71	5.88	1.75	0.81	-0.95	0.331826	0.709176
N	alternative_donor	ABCC10	chr6	+	chr6:43414185-43414985	chr6:43414373-43414985		chr6:43414185-43414372	chr6:43414184-43414185		NA	0.00	11.11	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	NA	12.50	NA	0.00	6.25	4.76	NA	NA	NA	10.00	7.14	NA	6.67	7.14	11.76	0.00	3.12	3.12	0.198198	0.570816
K	cassette	GUK1	chr1	+	chr1:228335401-228336365	chr1:228335401-228336071;chr1:228336158-228336365		chr1:228336072-228336157			61.46	64.98	58.70	68.46	69.78	67.98	94.86	89.63	86.15	90.64	94.12	95.76	92.17	89.83	87.32	93.41	94.06	96.34	73.08	76.47	82.21	70.19	68.31	74.59	69.77	77.78	67.68	77.21	82.68	82.58	76.37	76.45	71.79	73.62	72.53	73.12	72.44	77.12	4.69	0.905307	0.971243
N	cassette	NAPRT	chr8	-	chr8:144657071-144657592;chr8:144657071-144657360	chr8:144657071-144657155;chr8:144657264-144657592,chr8:144657264-144657360		chr8:144657156-144657263			89.19	76.92	100.00	80.77	74.47	83.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	84.62	100.00	100.00	100.00	75.66	88.24	88.46	NA	73.91	NA	65.91	100.00	84.00	NA	100.00	86.67	70.59	78.05	60.92	84.62	88.24	85.71	76.29	89.19	12.90	0.293029	0.709176
K	intron_retention	PTOV1	chr19	+	chr19:50361235-50361313				chr19:50361234-50361235;chr19:50361313-50361314		18.57	6.59	24.36	6.00	7.62	0.00	0.00	0.00	4.17	0.00	7.32	0.00	3.57	3.03	9.09	0.00	4.65	0.00	1.85	18.18	2.00	13.89	12.35	16.13	5.77	12.50	17.89	11.11	9.86	6.67	21.74	22.37	6.45	26.32	22.22	12.12	4.67	15.34	10.67	0.225643	1.000000
K	jcn_only_AD	HLA-DMA	chr6	-	chr6:32916646-32917050	chr6:32916646-32917047		chr6:32917048-32917050	chr6:32917050-32917051		52.27	58.54	53.06	54.18	56.01	57.53	92.87	92.31	94.23	88.69	91.78	90.59	92.86	92.00	94.74	94.70	90.91	93.65	92.72	89.41	93.41	93.14	92.73	93.32	20.88	15.58	10.08	16.48	15.87	17.07	93.10	89.95	92.11	91.73	92.38	91.41	92.41	90.70	-1.71	0.889289	0.943380
N	alternative_donor	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095537;chr10:74094376-74095543	chr10:74094376-74095591		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		19.23	47.27	36.17	43.33	34.78	32.20	29.17	21.88	35.14	19.35	39.02	21.74	32.26	20.69	23.68	17.14	22.50	22.22	42.59	25.93	25.00	30.00	35.14	26.32	28.57	28.00	31.58	44.00	31.03	16.13	33.33	30.00	57.14	19.23	31.58	33.33	37.42	23.91	-13.52	0.024982	0.306535
K	intron_retention	HMG20B	chr19	+	chr19:3578112-3578506				chr19:3578111-3578112;chr19:3578506-3578507		6.25	5.13	2.22	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	6.45	2.42	0.00	1.41	0.00	2.33	0.00	2.56	0.00	1.59	0.00	1.25	4.65	0.00	1.96	2.44	2.22	0.91	0.62	-0.29	0.956263	1.000000
K	intron_retention	SRRT	chr7	+	chr7:100485765-100485877				chr7:100485764-100485765;chr7:100485877-100485878		5.62	7.85	10.98	5.98	6.11	4.73	0.00	0.00	0.00	0.00	1.89	0.00	1.82	2.17	1.41	0.00	1.61	0.00	6.91	3.75	9.88	8.45	10.19	15.38	8.46	10.17	7.21	5.00	6.52	6.00	7.30	9.94	7.63	6.25	8.51	7.14	7.27	4.69	-2.58	0.938054	1.000000
K	jcn_only_AA	SECTM1	chr17	-	chr17:80282660-80285022	chr17:80282767-80285022		chr17:80282660-80282766	chr17:80282659-80282660		96.44	100.00	100.00	NA	96.61	91.43	100.00	97.48	96.99	100.00	100.00	97.09	96.19	97.78	96.11	96.83	97.96	100.00	100.00	96.79	100.00	100.00	96.97	96.49	100.00	100.00	100.00	94.74	100.00	95.29	97.04	96.23	100.00	98.08	94.59	94.98	100.00	97.26	-2.74	0.056738	0.663989
N	alternative_acceptor	GPX4	chr19	+	chr19:1106459-1106545;chr19:1106459-1106522;chr19:1106459-1106508;chr19:1106459-1106538	chr19:1106459-1106571		chr19:1106509-1106522;chr19:1106523-1106538;chr19:1106539-1106545;chr19:1106546-1106571	chr19:1106522-1106523;chr19:1106538-1106539;chr19:1106545-1106546;chr19:1106571-1106572		3.85	3.39	3.25	5.90	3.58	6.01	4.12	3.26	3.91	6.16	6.16	3.85	3.27	7.14	6.06	6.33	3.56	3.17	4.37	3.80	3.14	1.49	4.61	6.09	2.53	3.75	2.84	5.22	5.33	5.76	2.60	4.76	5.33	3.14	3.08	2.94	3.75	3.77	0.02	0.767689	0.913895
N	jcn_only_AA	TCF25	chr16	+	chr16:89960267-89961424;chr16:89960267-89961490	chr16:89960267-89961445		chr16:89961425-89961445;chr16:89961446-89961490	chr16:89961445-89961446;chr16:89961490-89961491		94.83	100.00	93.24	100.00	96.00	NA	92.31	98.48	96.77	95.45	94.68	96.36	93.18	96.43	96.05	96.20	93.67	92.86	87.50	94.87	91.43	93.33	94.12	91.49	100.00	98.08	93.24	95.24	95.12	95.00	85.71	92.75	96.30	92.98	95.45	91.86	94.74	95.65	0.91	0.958148	0.984403
N	cassette	FUCA2	chr6	-	chr6:143823260-143828373;chr6:143823260-143825049	chr6:143823260-143823491;chr6:143823703-143825049,chr6:143823703-143828373		chr6:143823492-143823702			96.49	100.00	97.44	100.00	100.00	100.00	98.50	99.20	100.00	100.00	100.00	100.00	99.60	100.00	100.00	100.00	99.67	100.00	100.00	98.48	100.00	98.63	97.93	100.00	100.00	98.80	100.00	100.00	98.76	100.00	94.64	95.65	95.74	99.24	98.50	99.46	99.80	98.64	-1.16	0.353597	0.709176
N	jcn_only_AD	GGA1	chr22	+	chr22:38013056-38014454;chr22:38013375-38014454	chr22:38013005-38014454		chr22:38013005-38013055;chr22:38013056-38013374	chr22:38013004-38013005;chr22:38013055-38013056		100.00	100.00	100.00	NA	100.00	NA	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	97.14	100.00	NA	NA	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.12	100.00	NA	100.00	96.49	100.00	100.00	100.00	0.00	0.473134	0.721034
K	intron_retention	PARP10	chr8	-	chr8:145058273-145058377				chr8:145058272-145058273;chr8:145058377-145058378		2.53	3.45	8.22	0.00	17.65	3.23	0.00	1.10	0.00	0.00	3.45	0.00	2.38	1.67	3.76	4.35	0.00	6.00	0.00	4.85	3.96	0.00	7.69	11.48	13.64	3.70	7.75	7.14	7.14	3.82	3.68	8.46	0.00	13.95	7.14	7.95	1.19	3.10	1.92	0.911326	1.000000
N	alternative_acceptor	MRPL30,RHOQ,RP11-111H13.1,RP11-38C17.1	chr2	+	chr2:46803796-46808066;chr2:46803796-46807747;chr2:46803796-46808070;chr2:46803796-46807695;chr2:46803796-46827732	chr2:46803796-46803887		chr2:46803888-46807695;chr2:46807696-46807747;chr2:46807748-46808066;chr2:46808067-46808070;chr2:46808071-46827732	chr2:46807695-46807696;chr2:46807747-46807748;chr2:46808066-46808067;chr2:46808070-46808071;chr2:46827732-46827733		7.69	0.00	8.00	NA	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	8.33	9.09	0.00	0.00	5.00	10.00	NA	7.69	5.00	0.00	0.00	10.00	NA	6.25	9.09	5.56	4.76	6.25	0.00	7.69	7.69	0.644018	0.867760
K	jcn_only_AD	RALGDS	chr9	-	chr9:135975770-135976906	chr9:135975770-135975882		chr9:135975883-135976906	chr9:135976906-135976907		4.76	12.12	6.78	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	7.14	0.00	5.56	0.00	15.38	11.11	4.55	6.90	7.14	15.79	NA	8.33	8.11	8.33	6.90	16.67	9.09	5.88	5.26	7.25	20.00	14.29	7.69	6.54	-1.15	0.465122	0.716512
K	intron_retention	MPPE1	chr18	-	chr18:11884627-11885674				chr18:11884626-11884627;chr18:11885674-11885675		0.00	0.00	2.38	0.00	4.44	NA	0.00	NA	0.00	NA	0.00	NA	6.67	NA	NA	NA	NA	NA	4.00	0.00	4.17	0.00	2.63	0.00	0.00	0.00	5.41	NA	7.69	NA	0.00	2.50	2.17	0.00	8.33	0.00	1.08	0.00	-1.08	0.505760	1.000000
K	alternative_donor	COPS6	chr7	+	chr7:99688931-99689042	chr7:99688954-99689042		chr7:99688931-99688953	chr7:99688930-99688931		86.96	94.64	90.62	94.12	95.35	88.46	85.00	91.67	90.00	94.12	92.59	100.00	82.05	81.82	87.50	88.46	93.94	89.47	77.42	85.00	83.02	90.91	97.22	100.00	80.43	66.67	90.91	100.00	93.75	86.96	83.33	83.33	85.94	94.74	93.10	93.10	83.53	84.16	0.64	0.702631	0.872665
N	jcn_only_AA		chr19	+	chr19:50335279-50335360	chr19:50335279-50335356		chr19:50335357-50335360	chr19:50335360-50335361		96.49	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	94.87	100.00	100.00	100.00	100.00	96.84	96.55	100.00	100.00	100.00	100.00	91.84	100.00	96.43	93.55	94.74	100.00	98.53	-1.47	0.076726	0.663989
K	alternative_acceptor	RPS15	chr19	+	chr19:1438428-1438809	chr19:1438428-1438805		chr19:1438806-1438809	chr19:1438809-1438810		100.00	92.59	93.10	88.66	89.16	89.71	92.22	100.00	85.88	92.13	95.33	93.94	94.21	91.43	88.51	93.60	91.41	91.67	90.84	91.80	91.86	90.37	93.12	90.32	90.32	100.00	89.47	91.53	92.68	90.30	93.62	91.87	94.54	92.86	91.36	93.33	92.41	96.81	4.41	0.094252	0.598353
K	jcn_only_AD	UPF1	chr19	+	chr19:18963881-18964060	chr19:18963914-18964060		chr19:18963881-18963913	chr19:18963880-18963881		0.00	0.00	12.50	NA	NA	NA	12.31	7.50	6.90	15.00	12.22	15.69	13.24	10.53	18.37	12.50	12.90	10.00	NA	14.29	NA	18.18	8.70	11.54	0.00	12.50	7.14	0.00	23.08	NA	NA	0.00	NA	10.00	9.68	5.88	6.16	10.53	4.37	0.586548	0.793484
N	jcn_only_AD	AP3D1	chr19	-	chr19:2111332-2111677	chr19:2111332-2111670		chr19:2111671-2111677	chr19:2111677-2111678		3.39	0.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	1.41	0.00	0.00	3.77	6.45	0.00	2.22	5.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	5.00	3.51	0.00	4.49	0.00	0.00	0.00	0.755693	0.874597
K	alternative_acceptor	MRPS16	chr10	-	chr10:75011782-75012227	chr10:75011796-75012227		chr10:75011782-75011795	chr10:75011781-75011782		0.00	6.45	3.70	0.00	2.63	0.00	1.14	0.00	3.33	1.89	1.49	3.45	1.14	0.00	0.00	1.59	0.00	0.00	4.00	0.00	0.00	4.17	2.17	4.76	0.00	0.00	4.00	6.90	2.22	0.00	0.00	0.00	4.35	0.00	5.88	3.33	2.57	0.00	-2.57	0.036974	0.560254
K	jcn_only_AD	SMIM4	chr3	+	chr3:52570790-52574439	chr3:52570923-52574439		chr3:52570790-52570922	chr3:52570789-52570790		50.00	57.07	62.50	45.33	49.78	50.00	52.73	NA	NA	47.62	50.00	63.16	50.00	54.55	NA	55.71	50.85	47.83	47.75	75.00	59.57	50.00	46.00	45.45	46.96	NA	57.14	42.86	45.38	65.12	54.55	66.67	40.38	48.39	50.85	41.03	48.88	54.55	5.67	0.195621	0.657607
K	jcn_only_AA	SLC38A10	chr17	-	chr17:79220041-79220684	chr17:79220474-79220684		chr17:79220041-79220473	chr17:79220040-79220041		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.43	96.30	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.55	100.00	94.74	100.00	100.00	100.00	100.00	0.00	0.980326	0.993254
K	intron_retention	CLEC11A	chr19	+	chr19:51228339-51228572				chr19:51228338-51228339;chr19:51228572-51228573		98.15	97.34	100.00	97.83	96.08	98.28	96.43	88.24	NA	95.56	96.15	100.00	95.12	NA	NA	97.62	96.92	100.00	96.90	94.74	100.00	96.77	94.20	91.67	96.93	100.00	100.00	97.14	96.47	96.88	95.00	97.18	98.85	97.18	96.88	95.74	96.92	95.00	-1.92	0.742493	1.000000
K	intron_retention	UQCRC1	chr3	-	chr3:48638274-48638407				chr3:48638273-48638274;chr3:48638407-48638408		2.16	4.40	5.51	3.09	2.53	1.83	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	1.25	0.00	0.00	0.00	1.89	0.00	1.56	1.35	5.59	2.70	1.23	1.27	3.55	1.16	3.66	4.05	4.82	6.20	2.16	3.31	3.21	2.00	1.56	0.64	-0.93	0.974561	1.000000
N	coord_cassette	TPRA1	chr3	-	chr3:127294349-127295459	chr3:127294349-127294591;chr3:127294653-127294782;chr3:127294894-127295459		chr3:127294592-127294652;chr3:127294783-127294893			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	STARD3	chr17	+	chr17:37815807-37816463	chr17:37815901-37816463		chr17:37815807-37815900	chr17:37815806-37815807		1.43	1.27	3.80	0.00	2.41	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.09	1.82	0.00	1.89	0.00	0.00	1.82	1.47	0.00	4.17	2.48	2.27	0.00	1.92	5.13	2.78	2.86	4.55	1.37	2.73	1.75	5.00	2.44	3.12	1.18	1.45	0.27	0.445503	0.705733
K	intron_retention	ZDHHC12	chr9	-	chr9:131483782-131483929				chr9:131483781-131483782;chr9:131483929-131483930		2.38	9.23	1.49	0.00	1.61	8.33	0.00	0.00	0.00	0.00	1.47	0.00	0.90	0.00	0.00	0.00	1.20	0.00	1.52	0.00	2.86	0.00	3.51	0.00	5.56	3.03	8.20	0.00	6.00	10.00	8.97	7.87	9.09	8.33	6.98	2.56	3.54	1.19	-2.35	0.720177	1.000000
N	alternative_acceptor	CD37,SNRPA	chr19	+	chr19:49842671-49843672;chr19:49842671-49843507	chr19:49842671-49842914		chr19:49842915-49843507;chr19:49843508-49843672	chr19:49843507-49843508;chr19:49843672-49843673		29.27	18.29	29.27	9.59	11.79	8.97	15.38	12.86	7.69	10.42	11.27	4.55	13.64	10.59	20.00	8.11	11.67	3.45	18.08	25.45	16.67	16.67	14.06	8.11	13.91	22.00	25.53	15.79	12.35	9.38	25.49	28.26	12.78	12.77	18.33	11.24	14.64	23.73	9.08	0.133453	0.629354
K	alternative_donor	RAB7A	chr3	+	chr3:128525293-128526385	chr3:128525434-128526385		chr3:128525293-128525433	chr3:128525292-128525293		95.09	85.96	95.28	96.08	96.39	100.00	95.61	96.81	95.31	95.97	95.89	96.34	95.57	95.95	96.20	95.80	97.12	96.49	100.00	98.04	100.00	98.71	99.29	98.77	NA	95.74	96.07	98.87	98.65	98.71	97.30	97.50	95.24	98.23	98.05	98.10	95.57	96.38	0.81	0.436218	0.698333
K	intron_retention		chr22	+	chr22:40804847-40804936				chr22:40804846-40804847;chr22:40804936-40804937		0.00	8.33	8.62	0.00	4.41	2.70	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	NA	4.35	5.26	1.75	0.00	10.00	0.00	0.00	6.90	0.00	0.00	8.33	3.45	0.00	4.88	2.06	4.76	5.13	9.52	1.03	0.00	-1.03	0.801073	1.000000
K	alternative_acceptor	SRSF10	chr1	-	chr1:24294214-24298062	chr1:24294447-24298062		chr1:24294214-24294446	chr1:24294213-24294214		30.00	6.67	32.14	7.69	18.18	6.67	10.00	11.76	13.79	8.33	6.98	7.69	11.11	17.65	8.82	6.90	9.80	3.70	11.11	31.25	7.69	22.58	25.00	9.52	NA	23.53	19.23	10.00	22.22	9.52	25.00	25.00	6.67	14.71	25.93	13.51	10.00	24.27	14.27	0.004394	0.405868
N	alternative_donor	EML3,PICALM	chr11	-	chr11:62377169-62378350	chr11:62377169-62378107		chr11:62378108-62378350	chr11:62378350-62378351		0.00	7.69	6.90	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	5.26	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
N	alternative_acceptor	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668273;chr17:79668162-79668567;chr17:79668162-79668244	chr17:79668162-79668537		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		72.55	71.01	73.85	70.00	75.68	70.18	85.71	82.61	84.62	74.14	76.92	76.19	77.27	82.76	79.41	75.00	76.19	81.82	78.57	82.35	82.50	74.14	72.86	71.70	75.00	72.09	75.86	76.47	81.36	73.53	83.33	78.57	78.12	73.44	76.36	75.56	77.69	82.48	4.78	0.585884	0.843374
K	intron_retention	MLLT1	chr19	-	chr19:6211077-6211308				chr19:6211076-6211077;chr19:6211308-6211309		100.00	100.00	98.04	93.33	100.00	92.86	100.00	100.00	92.86	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	93.55	95.00	100.00	100.00	100.00	100.00	100.00	84.62	96.61	100.00	100.00	96.55	100.00	92.11	100.00	100.00	92.86	93.94	100.00	100.00	0.00	0.673042	1.000000
N	jcn_only_AA	HLA-DQA1	chr6	+	chr6:32610031-32610386;chr6:32610031-32622443	chr6:32610031-32610728		chr6:32610387-32610728;chr6:32610729-32622443	chr6:32610728-32610729;chr6:32622443-32622444		5.26	4.07	4.55	4.08	5.69	5.83	1.99	2.33	1.64	3.48	6.57	5.00	NA	NA	0.00	NA	NA	NA	NA	NA	5.26	NA	NA	NA	0.00	2.17	4.00	4.55	6.10	4.49	0.00	0.00	0.00	0.00	0.00	0.00	0.99	2.25	1.25	0.548131	0.782674
K	alternative_last_exon	MROH1	chr8	+	chr8:145255445-145266695,chr8:145255445-145268908;chr8:145255445-145275502	chr8:145255445-145267896	chr8:145275503-145275576	chr8:145267897-145268370			58.33	82.35	16.67	85.71	84.21	100.00	14.29	27.27	NA	50.00	38.46	NA	17.65	58.33	27.27	38.89	44.44	NA	84.62	54.55	86.67	75.00	38.10	40.00	NA	NA	NA	64.71	72.73	81.82	56.25	NA	86.67	60.00	45.83	39.47	82.35	56.25	-26.10	0.743631	0.835742
N	alternative_acceptor	BUD31	chr7	+	chr7:99015219-99017013	chr7:99015219-99016784		chr7:99016785-99017013	chr7:99017013-99017014		5.21	5.03	6.62	3.32	4.26	2.64	6.25	3.23	3.85	6.94	9.09	7.81	5.75	4.82	5.75	7.14	5.13	6.82	2.74	6.25	6.56	5.00	5.76	4.00	4.54	4.76	6.85	3.54	5.03	7.51	5.58	7.45	5.01	4.55	4.49	6.25	5.02	5.02	-0.00	0.894079	0.963205
N	alternative_donor	HSP90B1	chr12	+	chr12:104341209-104347163	chr12:104345402-104347163		chr12:104341209-104345401	chr12:104341208-104341209		100.00	100.00	100.00	100.00	100.00	100.00	76.32	68.18	60.71	70.00	73.08	69.57	78.05	66.67	54.55	67.65	60.00	76.19	100.00	100.00	96.43	100.00	100.00	100.00	100.00	90.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	-5.00	0.559203	0.790811
K	intron_retention	MXD3	chr5	-	chr5:176730322-176730407				chr5:176730321-176730322;chr5:176730407-176730408		48.94	57.14	53.15	75.00	75.00	62.50	70.59	76.47	76.56	71.43	78.95	55.56	75.00	78.95	81.63	NA	62.96	81.82	54.55	46.07	56.98	70.00	71.88	57.89	78.57	57.14	54.92	81.82	85.19	73.47	49.12	53.19	61.29	52.63	60.71	55.74	65.94	53.13	-12.81	0.827700	1.000000
K	intron_retention		chr20	+	chr20:47895746-47905581				chr20:47895745-47895746;chr20:47905581-47905582		36.36	18.57	16.00	40.00	15.56	40.00	0.00	0.00	5.88	12.50	0.00	7.14	10.00	9.09	8.00	20.00	NA	8.33	23.91	37.50	21.67	43.75	26.92	46.67	14.29	33.33	17.86	55.00	26.32	50.00	28.33	30.30	22.97	48.28	33.33	50.00	16.43	30.83	14.40	0.498405	1.000000
N	intron_retention		chr16	+	chr16:23678895-23680711				chr16:23678894-23678895;chr16:23680711-23680712		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.24	100.00	100.00	100.00	100.00	96.97	100.00	100.00	0.00	0.594508	1.000000
N	intron_retention		chr6	-	chr6:136580063-136582167				chr6:136580062-136580063;chr6:136582167-136582168		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	92.86	100.00	100.00	100.00	0.00	0.608000	1.000000
K	intron_retention	B4GALT3	chr1	-	chr1:161141880-161142016				chr1:161141879-161141880;chr1:161142016-161142017		0.00	2.63	6.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.35	0.00	0.00	NA	0.00	0.00	1.92	0.00	0.00	0.00	4.17	1.85	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.977416	1.000000
N	jcn_only_AD	MIF4GD	chr17	-	chr17:73263049-73263531;chr17:73263049-73263711	chr17:73263049-73263618		chr17:73263532-73263618;chr17:73263619-73263711	chr17:73263618-73263619;chr17:73263711-73263712		100.00	100.00	100.00	NA	94.44	NA	97.14	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.86	100.00	100.00	NA	92.68	NA	100.00	NA	90.48	NA	97.73	100.00	100.00	95.24	93.55	NA	92.86	100.00	98.57	100.00	1.43	0.100288	0.639657
K	alternative_donor	RBMX	chrX	-	chrX:135954505-135957244	chrX:135954505-135955404		chrX:135955405-135957244	chrX:135957244-135957245		93.75	100.00	79.07	100.00	100.00	100.00	96.23	100.00	87.18	96.72	95.95	100.00	100.00	100.00	95.00	95.24	97.40	100.00	100.00	81.25	100.00	87.50	92.86	93.10	100.00	NA	90.24	97.22	94.64	100.00	58.33	70.59	100.00	92.86	92.68	94.29	100.00	93.75	-6.25	0.181839	0.563271
N	alternative_acceptor	OSBPL2	chr20	+	chr20:60859226-60861638;chr20:60859226-60860591	chr20:60859226-60860542		chr20:60860543-60860591;chr20:60860592-60861638	chr20:60860591-60860592;chr20:60861638-60861639		4.76	8.33	4.55	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	4.17	NA	NA	0.00	NA	0.00	3.57	4.00	NA	0.00	NA	5.00	2.94	NA	4.55	0.00	5.88	0.00	3.87	3.87	0.732678	0.901237
K	jcn_only_AA	ARSK,CTC-554D6.1,SRP19	chr5	+	chr5:112200430-112203100	chr5:112200430-112203068		chr5:112203069-112203100	chr5:112203100-112203101		11.11	6.67	6.67	6.25	9.09	5.77	0.00	1.89	6.06	5.38	5.56	5.94	4.55	5.88	5.13	8.33	8.00	4.90	0.00	4.44	7.02	4.11	6.74	2.82	0.00	13.64	1.64	5.80	4.30	4.39	8.82	6.35	6.38	5.06	6.41	4.76	2.27	7.35	5.07	0.064206	0.663989
K	cassette	NDUFV1	chr11	+	chr11:67374548-67376022	chr11:67374548-67375902;chr11:67375950-67376022		chr11:67375903-67375949			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	alternative_last_exon	TPM3	chr1	-	chr1:154130198-154141780	chr1:154140417-154141780	chr1:154127780-154130197	chr1:154139941-154140416			6.67	0.00	0.00	13.33	0.00	16.13	5.56	7.14	NA	5.56	4.00	4.76	0.00	3.85	20.00	8.33	8.33	6.67	NA	5.00	NA	0.00	5.00	0.00	NA	4.76	NA	5.88	5.56	8.00	0.00	NA	0.00	7.14	5.56	9.52	0.00	4.88	4.88	0.115747	0.333781
K	intron_retention	DPM2	chr9	-	chr9:130698935-130699712				chr9:130698934-130698935;chr9:130699712-130699713		3.85	2.33	10.00	5.88	8.11	15.38	2.94	2.94	2.70	0.00	2.08	0.00	3.45	9.68	6.06	5.05	5.08	0.00	2.08	2.38	7.32	12.90	4.55	7.69	0.00	3.70	5.56	10.00	5.45	4.26	15.62	4.76	7.14	4.76	7.69	4.76	2.63	3.78	1.14	0.377308	1.000000
K	intron_retention	PPP1R35	chr7	-	chr7:100033391-100033470				chr7:100033390-100033391;chr7:100033470-100033471		29.41	42.86	54.55	NA	31.58	33.33	0.00	NA	NA	NA	10.00	NA	NA	8.33	18.18	NA	0.00	NA	23.53	20.00	26.09	NA	40.00	NA	NA	20.00	37.50	NA	40.00	NA	31.82	36.84	20.83	20.00	50.00	NA	22.18	20.00	-2.18	0.983172	1.000000
K	alternative_donor	CHMP1A	chr16	-	chr16:89713740-89715785	chr16:89713740-89715758		chr16:89715759-89715785	chr16:89715785-89715786		95.92	100.00	100.00	NA	94.44	NA	95.92	98.46	100.00	100.00	100.00	100.00	100.00	96.30	96.30	96.97	100.00	97.50	NA	100.00	94.44	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.70	100.00	100.00	97.38	-2.62	0.395481	0.658590
K	jcn_only_AD	QARS	chr3	-	chr3:49141406-49141805	chr3:49141406-49141756		chr3:49141757-49141805	chr3:49141805-49141806		100.00	100.00	100.00	NA	100.00	NA	97.78	100.00	100.00	100.00	98.46	100.00	97.40	100.00	100.00	100.00	98.18	97.78	NA	100.00	NA	NA	100.00	95.00	100.00	93.55	96.88	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	98.89	100.00	1.11	0.921838	0.958585
N	jcn_only_AD		chr19	-	chr19:19746023-19746247	chr19:19746023-19746223		chr19:19746224-19746247	chr19:19746247-19746248		100.00	100.00	100.00	NA	100.00	NA	100.00	99.10	100.00	100.00	98.28	100.00	98.68	100.00	100.00	100.00	100.00	89.47	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	97.37	100.00	100.00	100.00	0.00	0.581947	0.791599
N	cassette	XPNPEP1	chr10	-	chr10:111629788-111631549	chr10:111629788-111630488;chr10:111630663-111631549		chr10:111630489-111630662			100.00	100.00	100.00	93.75	94.29	NA	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	95.74	96.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr10	-	chr10:120796822-120797749				chr10:120796821-120796822;chr10:120797749-120797750		0.00	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	1.83	1.19	2.04	0.00	0.00	0.93	1.59	0.00	2.17	3.17	5.13	0.00	1.69	0.82	1.27	0.00	0.00	0.00	0.474696	1.000000
K	intron_retention	DGCR14	chr22	-	chr22:19125831-19126671				chr22:19125830-19125831;chr22:19126671-19126672		0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	6.25	0.00	5.26	5.26	NA	0.00	9.09	NA	0.00	5.00	13.04	10.53	0.00	0.00	0.00	9.38	0.00	0.00	0.00	0.474532	1.000000
K	jcn_only_AD	C19orf25	chr19	-	chr19:1475258-1478772	chr19:1475258-1478652		chr19:1478653-1478772	chr19:1478772-1478773		NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	3.57	0.00	NA	NA	NA	0.00	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	cassette	HCK	chr20	+	chr20:30640290-30659464	chr20:30640290-30642018;chr20:30642085-30659464		chr20:30642019-30642084			3.12	10.20	4.20	38.71	13.64	80.77	2.27	4.71	5.88	4.86	3.30	4.01	3.21	5.23	6.88	6.52	2.73	3.21	25.00	4.93	9.48	8.11	3.73	5.00	NA	4.04	3.32	3.36	6.67	5.71	5.96	3.85	43.75	3.33	3.65	3.62	10.20	4.82	-5.38	0.194667	0.709176
K	intron_retention		chr20	+	chr20:44755341-44756776				chr20:44755340-44755341;chr20:44756776-44756777		10.95	0.00	6.04	5.94	6.67	4.21	0.00	1.21	0.63	0.88	0.00	0.57	0.00	0.89	1.40	0.69	0.00	0.91	5.26	5.96	4.72	10.43	10.00	10.67	NA	5.43	4.69	4.02	6.06	5.52	3.92	3.95	0.00	4.94	4.44	7.59	0.00	4.67	4.67	0.322909	1.000000
K	intron_retention		chr11	-	chr11:126136818-126137069				chr11:126136817-126136818;chr11:126137069-126137070		11.11	0.00	6.59	NA	16.67	NA	0.00	0.00	0.00	0.00	0.82	0.00	0.79	0.00	0.00	0.00	0.77	0.00	NA	6.25	21.43	2.78	6.12	8.51	11.76	4.55	8.16	2.86	8.11	0.00	5.00	12.50	NA	6.12	5.77	11.11	0.40	4.78	4.38	0.966844	1.000000
K	intron_retention	TNFRSF12A	chr16	+	chr16:3071691-3071771				chr16:3071690-3071691;chr16:3071771-3071772		7.14	0.00	0.00	0.00	2.44	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.03	2.33	0.00	NA	0.00	5.00	0.00	1.80	0.00	18.75	11.76	0.00	2.08	4.76	0.00	0.00	0.00	0.00	0.479253	1.000000
N	alternative_acceptor		chrX	+	chrX:54841209-54842313	chrX:54841209-54841680		chrX:54841681-54842313	chrX:54842313-54842314		95.12	100.00	98.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	93.07	95.58	100.00	100.00	100.00	100.00	94.70	96.97	100.00	100.00	100.00	94.05	95.05	93.75	100.00	100.00	100.00	100.00	94.91	-5.09	0.188900	0.660713
N	alternative_acceptor	PFKL	chr21	+	chr21:45742933-45743648	chr21:45742933-45743457		chr21:45743458-45743648	chr21:45743648-45743649		1.15	1.12	2.78	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	1.10	0.00	0.00	2.13	1.56	0.00	2.74	0.00	0.00	0.00	0.00	0.00	1.35	5.00	0.00	2.22	0.00	1.92	1.22	2.44	0.00	0.00	0.00	0.410499	0.725473
K	cassette	HTRA2	chr2	+	chr2:74759053-74759946	chr2:74759053-74759745;chr2:74759842-74759946		chr2:74759746-74759841			100.00	100.00	95.45	75.00	83.87	87.50	89.47	NA	88.89	85.71	80.00	NA	93.33	NA	100.00	68.75	84.62	NA	82.76	90.00	93.55	81.82	85.71	80.00	100.00	100.00	92.31	81.82	75.00	100.00	100.00	100.00	86.21	91.67	83.33	NA	91.40	100.00	8.60	0.187664	0.709176
N	cassette	COMMD4	chr15	+	chr15:75631027-75631604;chr15:75631027-75632305	chr15:75631027-75631377;chr15:75631446-75632305,chr15:75631446-75631604		chr15:75631378-75631445			100.00	100.00	90.00	100.00	97.83	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	97.50	NA	94.44	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	91.67	95.56	100.00	100.00	100.00	99.06	100.00	0.94	0.099252	0.678740
K	intron_retention		chr1	+	chr1:24121091-24121171				chr1:24121090-24121091;chr1:24121171-24121172		7.14	8.14	12.16	3.12	8.00	5.26	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	2.00	2.63	1.82	0.00	9.59	7.94	3.39	6.90	12.50	16.00	0.00	6.78	10.00	6.90	7.61	5.00	12.96	15.15	10.87	6.52	7.89	8.16	4.07	6.96	2.89	0.946943	1.000000
N	alternative_acceptor	PLXNB2	chr22	-	chr22:50717363-50718058	chr22:50717441-50718058		chr22:50717363-50717440	chr22:50717362-50717363		98.31	100.00	97.45	100.00	100.00	NA	97.42	100.00	98.04	100.00	100.00	100.00	100.00	96.97	100.00	100.00	97.54	100.00	100.00	94.44	97.59	100.00	98.32	100.00	95.12	97.67	100.00	95.12	97.89	100.00	94.12	98.36	100.00	100.00	97.84	100.00	100.00	97.32	-2.68	0.173663	0.660713
N	alternative_acceptor	SNRPD1	chr18	+	chr18:19202763-19203835;chr18:19202763-19203708	chr18:19202763-19203831		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	2.56	0.00	1.96	NA	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.98	0.00	-0.98	0.114973	0.605363
K	intron_retention		chr2	+	chr2:27870811-27872981				chr2:27870810-27870811;chr2:27872981-27872982		0.00	0.00	6.98	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	5.26	0.00	1.85	0.00	NA	11.76	6.25	0.00	0.00	0.00	5.00	3.03	4.00	2.27	2.04	2.44	0.00	0.00	0.00	0.628924	1.000000
N	alternative_acceptor	IFNAR2	chr21	+	chr21:34633033-34634865;chr21:34633033-34635116;chr21:34633033-34638316	chr21:34633033-34635097		chr21:34634866-34635097;chr21:34635098-34635116;chr21:34635117-34638316	chr21:34635097-34635098;chr21:34635116-34635117;chr21:34638316-34638317		54.69	1.85	72.07	0.00	3.92	2.94	62.22	59.78	70.73	69.44	65.00	64.37	45.45	61.70	69.00	42.47	65.69	58.11	0.00	65.00	6.38	41.46	40.54	65.38	0.00	69.05	64.42	27.66	28.57	20.22	47.06	50.00	3.23	35.29	54.93	52.83	2.54	60.74	58.20	0.014078	0.497484
K	cassette	C11orf73	chr11	+	chr11:86055764-86056625	chr11:86055764-86056135;chr11:86056241-86056625		chr11:86056136-86056240			11.11	0.00	5.71	4.55	9.09	4.76	0.00	NA	0.00	NA	0.00	NA	4.76	0.00	0.00	NA	NA	NA	8.96	5.00	4.17	NA	7.69	0.00	4.00	NA	6.25	0.00	0.00	0.00	7.69	22.73	9.23	4.76	4.55	5.88	4.38	6.35	1.97	0.630420	0.865924
N	alternative_acceptor	TUBGCP2	chr10	-	chr10:135106743-135107065	chr10:135106755-135107065		chr10:135106743-135106754	chr10:135106742-135106743		0.00	0.00	0.00	NA	0.00	NA	1.72	0.00	4.35	2.56	1.45	0.00	4.76	0.00	0.00	3.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	7.14	5.00	0.00	0.00	0.00	NA	0.00	0.00	4.35	0.86	0.00	-0.86	0.244647	0.699506
N	alternative_donor	COA6	chr1	+	chr1:234513356-234519468;chr1:234510022-234519468	chr1:234510136-234519468		chr1:234510022-234510135;chr1:234510136-234513355	chr1:234510021-234510022;chr1:234510135-234510136		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.220404	0.595046
N	jcn_only_AA	TMEM205	chr19	-	chr19:11456296-11456802;chr19:11456305-11456802;chr19:11456092-11456802	chr19:11456414-11456802					6.67	10.84	10.56	12.20	14.52	8.82	6.58	12.90	14.96	11.11	4.00	6.38	10.00	8.82	13.13	8.00	5.88	7.14	8.79	6.82	14.67	8.51	8.45	11.11	7.14	20.59	14.08	20.45	6.25	8.96	5.00	13.43	17.91	11.36	10.34	7.14	9.39	7.82	-1.57	0.979489	0.993254
N	alternative_donor	FCER1G	chr1	+	chr1:161187546-161187775;chr1:161187507-161187775;chr1:161183980-161187775;chr1:161187327-161187775	chr1:161185161-161187775		chr1:161183980-161185160;chr1:161185161-161187326;chr1:161187327-161187506;chr1:161187507-161187545	chr1:161183979-161183980;chr1:161185160-161185161;chr1:161187326-161187327;chr1:161187506-161187507		96.96	97.01	95.42	98.89	98.93	100.00	99.76	99.48	99.52	99.75	99.79	99.15	99.79	98.92	98.53	99.74	99.34	99.45	100.00	97.48	98.60	97.55	97.16	94.85	96.51	97.50	96.61	96.26	97.48	95.33	98.62	97.30	97.73	97.11	95.87	93.65	98.75	98.06	-0.69	0.695037	0.870486
N	jcn_only_AA	ADAM28	chr8	+	chr8:24199271-24200185;chr8:24199271-24200613	chr8:24199271-24200501		chr8:24200186-24200501;chr8:24200502-24200613	chr8:24200501-24200502;chr8:24200613-24200614		15.00	10.00	17.58	NA	10.53	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	8.00	20.00	4.08	4.96	4.62	NA	13.04	13.21	0.00	2.13	0.00	10.91	8.00	5.41	3.30	0.00	3.82	5.41	9.46	4.04	0.343378	0.663989
K	alternative_donor	PANK2	chr20	+	chr20:3888926-3891223;chr20:3888783-3891223	chr20:3889553-3891223		chr20:3888783-3888925;chr20:3888926-3889552	chr20:3888782-3888783;chr20:3888925-3888926		12.28	13.33	12.20	NA	10.00	NA	2.70	6.45	6.00	4.76	0.00	7.69	2.86	4.84	7.69	5.13	4.35	2.94	NA	9.09	21.43	NA	11.11	7.69	NA	9.84	6.82	11.76	6.67	11.11	19.57	14.29	53.33	7.41	9.38	7.94	8.10	9.46	1.37	0.569988	0.798196
N	alternative_donor	RNF135	chr17	+	chr17:29324681-29325679;chr17:29324617-29325679	chr17:29324350-29325679		chr17:29324350-29324616;chr17:29324617-29324680	chr17:29324349-29324350;chr17:29324616-29324617		95.88	98.21	95.65	NA	97.85	NA	100.00	95.59	92.73	100.00	99.00	NA	99.15	95.77	98.08	100.00	100.00	NA	98.11	95.45	100.00	NA	97.85	NA	100.00	92.17	97.30	100.00	98.81	NA	89.47	94.83	100.00	97.14	97.22	100.00	99.58	95.52	-4.05	0.003711	0.144201
K	cassette	APOPT1	chr14	+	chr14:104040508-104053610	chr14:104040508-104045707;chr14:104045829-104053610		chr14:104045708-104045828			0.00	12.90	0.00	0.00	3.33	0.00	3.03	0.00	9.52	2.78	4.88	0.00	3.33	0.00	5.26	3.23	6.12	3.12	5.00	0.00	3.85	0.00	0.00	0.00	12.00	8.33	0.00	0.00	0.00	0.00	NA	0.00	3.03	8.33	3.33	0.00	4.17	0.00	-4.17	0.084895	0.641134
N	jcn_only_AA	CC2D1B	chr1	-	chr1:52818896-52819189	chr1:52818933-52819189		chr1:52818896-52818932	chr1:52818895-52818896		5.36	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.270869	0.663989
K	intron_retention		chr8	+	chr8:21959363-21959685				chr8:21959362-21959363;chr8:21959685-21959686		25.00	45.00	25.00	NA	27.78	NA	0.00	0.00	0.00	0.00	9.09	NA	5.00	NA	6.90	0.00	0.00	NA	NA	12.50	NA	NA	15.38	NA	45.45	18.75	23.53	6.67	14.29	16.67	NA	25.93	NA	5.00	13.64	6.45	25.00	15.62	-9.38	0.794723	1.000000
K	alternative_donor	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6917597-6918380	chr17:6918198-6918380		chr17:6917597-6918197	chr17:6917596-6917597		94.68	100.00	95.42	97.52	100.00	98.79	100.00	100.00	100.00	95.13	100.00	95.73	100.00	100.00	95.02	100.00	100.00	97.06	95.20	87.45	93.17	100.00	96.48	94.48	99.63	95.88	96.07	95.20	96.38	95.88	89.91	89.54	94.27	95.67	97.84	96.15	99.81	95.28	-4.53	0.177863	0.563271
N	jcn_only_AA		chr2	+	chr2:114727181-114728224	chr2:114727181-114728205					100.00	100.00	95.24	100.00	100.00	96.30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	85.71	94.44	100.00	88.89	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	TCIRG1	chr11	+	chr11:67817722-67817953				chr11:67817721-67817722;chr11:67817953-67817954		10.64	8.47	14.97	11.66	14.32	7.19	1.78	1.88	1.99	0.75	2.68	0.00	1.71	2.09	3.35	1.65	2.68	0.00	7.26	11.88	7.03	12.44	15.64	6.57	5.23	9.21	11.24	8.51	13.11	8.70	13.02	15.60	7.48	9.41	12.84	9.72	6.25	9.93	3.68	0.625011	1.000000
N	jcn_only_AA		chr18	+	chr18:33552871-33553554;chr18:33552871-33554902	chr18:33552871-33554858		chr18:33553555-33554858;chr18:33554859-33554902	chr18:33554858-33554859;chr18:33554902-33554903		100.00	100.00	100.00	NA	NA	NA	90.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	95.00	NA	100.00	100.00	NA	100.00	100.00	100.00	91.67	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.832501	0.934414
K	intron_retention	ILK	chr11	+	chr11:6630388-6630529				chr11:6630387-6630388;chr11:6630529-6630530		5.84	8.89	10.00	8.82	9.18	5.26	0.93	0.00	0.00	1.49	1.56	0.00	1.04	0.51	0.77	0.00	0.00	0.00	12.50	6.14	7.87	6.52	11.52	15.22	8.20	3.52	10.20	8.45	4.70	9.62	6.60	12.41	7.32	9.01	7.48	8.80	7.76	4.68	-3.08	0.722801	1.000000
N	intron_retention		chr2	-	chr2:38975796-38976381				chr2:38975795-38975796;chr2:38976381-38976382		65.62	55.00	74.19	60.00	59.65	NA	76.47	66.67	60.00	66.67	85.29	NA	77.78	63.64	71.43	73.33	84.21	NA	60.00	68.18	70.00	61.11	69.37	73.08	100.00	68.00	72.50	83.33	74.36	70.59	48.15	66.18	53.33	67.44	70.00	62.50	68.23	66.15	-2.09	0.413356	1.000000
K	jcn_only_AA	SUPT5H	chr19	+	chr19:39936278-39936443;chr19:39936278-39936518	chr19:39936278-39936521		chr19:39936444-39936518;chr19:39936519-39936521	chr19:39936518-39936519;chr19:39936521-39936522		21.88	0.00	18.75	NA	NA	NA	20.00	28.89	20.93	23.40	34.78	20.00	19.57	39.29	23.33	32.50	30.00	26.32	NA	20.00	27.27	22.22	27.91	31.82	28.57	16.67	16.33	13.64	20.00	8.70	37.50	29.03	25.00	40.62	25.58	31.11	20.00	25.38	5.38	0.200820	0.663989
K	intron_retention	SMAP2	chr1	+	chr1:40878775-40879830				chr1:40878774-40878775;chr1:40879830-40879831		4.71	5.13	7.38	4.55	0.00	4.00	0.00	1.09	0.50	0.00	1.05	0.25	0.00	0.00	1.32	0.00	0.00	1.00	5.56	2.67	2.50	6.06	1.61	7.57	0.00	3.92	3.45	0.00	0.00	0.83	2.44	4.14	0.00	5.56	0.00	5.34	0.00	2.55	2.55	0.876074	1.000000
K	intron_retention	DDX41	chr5	-	chr5:176939395-176939496				chr5:176939394-176939395;chr5:176939496-176939497		2.99	3.54	2.22	2.63	1.10	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	1.85	4.12	0.00	1.22	0.00	0.00	0.00	1.33	0.00	0.00	2.70	9.52	8.51	6.29	0.00	3.28	1.61	1.22	0.93	-0.29	0.989223	1.000000
N	alternative_acceptor	SNN	chr16	+	chr16:11762397-11769830	chr16:11762397-11764472		chr16:11764473-11769830	chr16:11769830-11769831		5.26	0.00	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.74	0.00	1.25	0.00	3.70	0.00	1.61	0.00	2.75	9.09	1.85	NA	0.00	0.00	0.00	2.70	NA	0.00	5.00	4.17	2.63	0.00	2.28	2.28	0.682844	0.881289
K	alternative_last_exon	BCL2L2,CHURC1,CHURC1-FNTB	chr14	+	chr14:65392799-65407196,chr14:65392799-65408940,chr14:65392799-65410016;chr14:65392799-65470966	chr14:65392799-65398855	chr14:65470967-65471031	chr14:65398856-65402086			100.00	100.00	96.15	90.00	95.83	92.86	94.59	89.47	93.55	91.30	93.75	95.00	100.00	100.00	92.00	91.67	94.00	94.12	100.00	96.55	95.65	100.00	100.00	100.00	100.00	97.06	100.00	95.45	97.78	96.67	100.00	100.00	100.00	92.31	97.06	96.67	100.00	98.53	-1.47	0.342975	0.535374
N	jcn_only_AA	DHPS	chr19	-	chr19:12786920-12787921;chr19:12786957-12787921	chr19:12786893-12787921		chr19:12786893-12786919;chr19:12786920-12786956	chr19:12786892-12786893;chr19:12786919-12786920		0.00	7.14	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.363217	0.663989
N	coord_cassette	HSD17B14	chr19	-	chr19:49318399-49337532	chr19:49318399-49334924;chr19:49335017-49335922;chr19:49336010-49337532		chr19:49334925-49335016;chr19:49335923-49336009			90.91	82.93	NA	89.66	92.45	100.00	95.83	84.62	90.91	95.00	100.00	95.45	100.00	100.00	NA	100.00	100.00	100.00	89.13	87.50	92.59	88.89	94.64	88.89	88.64	100.00	80.00	96.15	91.07	94.29	86.21	100.00	88.10	93.55	92.31	90.70	88.88	89.20	0.32	0.841991	0.947975
N	cassette	PSMD11	chr17	+	chr17:30806395-30807163	chr17:30806395-30806868;chr17:30806905-30807163		chr17:30806869-30806904			100.00	100.00	96.83	100.00	100.00	100.00	100.00	100.00	100.00	99.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.64	100.00	100.00	100.00	96.43	NA	98.86	100.00	100.00	100.00	100.00	94.74	96.15	100.00	100.00	97.40	100.00	100.00	99.43	-0.57	0.127779	0.709176
N	cassette	TXN2	chr22	-	chr22:36863965-36876621	chr22:36863965-36872779;chr22:36872904-36876621		chr22:36872780-36872903			92.50	92.65	96.43	100.00	96.00	100.00	98.50	90.00	96.00	91.94	96.55	96.08	96.69	100.00	92.73	95.45	94.44	100.00	93.68	92.86	94.19	91.30	95.70	100.00	100.00	91.30	93.02	91.43	94.17	100.00	96.00	100.00	98.00	95.00	96.39	93.75	97.34	92.68	-4.66	0.170716	0.709176
K	intron_retention	PLXNB2	chr22	-	chr22:50716949-50717024				chr22:50716948-50716949;chr22:50717024-50717025		2.82	2.71	1.81	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.30	1.61	3.65	0.00	1.83	0.00	1.94	0.83	0.83	0.00	0.00	0.00	10.53	5.76	5.66	2.13	1.70	0.00	2.12	1.22	-0.90	0.930114	1.000000
K	cassette	GANAB	chr11	-	chr11:62400987-62402292	chr11:62400987-62401781;chr11:62401848-62402292		chr11:62401782-62401847			12.28	23.08	20.17	NA	NA	NA	10.41	11.76	12.28	9.20	8.74	10.34	10.43	10.61	6.82	10.06	9.75	12.50	NA	15.56	NA	20.51	17.91	18.18	19.23	24.32	28.38	17.24	25.00	18.75	10.00	16.67	NA	19.67	16.30	18.11	14.83	12.02	-2.81	0.677252	0.883540
K	jcn_only_AD	LCMT1	chr16	+	chr16:25182119-25186257	chr16:25182127-25186257		chr16:25182119-25182126	chr16:25182118-25182119		98.63	100.00	100.00	100.00	100.00	99.06	97.14	96.97	97.22	100.00	100.00	100.00	100.00	100.00	95.24	100.00	96.00	94.12	99.05	100.00	98.81	100.00	100.00	96.00	98.77	100.00	97.78	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	99.53	100.00	0.47	0.879875	0.939517
N	jcn_only_AA	MYO9B	chr19	+	chr19:17322584-17322809;chr19:17322584-17322868;chr19:17322584-17325268	chr19:17322584-17322703		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		100.00	100.00	100.00	100.00	94.44	90.00	100.00	NA	NA	NA	NA	NA	81.82	NA	NA	NA	NA	NA	94.74	90.00	100.00	83.33	94.55	88.89	100.00	93.55	93.75	100.00	100.00	91.30	100.00	88.89	95.45	78.57	75.00	90.48	97.72	96.78	-0.95	0.888035	0.960308
N	jcn_only_AA	H2AFY	chr5	-	chr5:134696289-134705095;chr5:134696471-134705095;chr5:134696295-134705095	chr5:134696298-134705095		chr5:134696289-134696294;chr5:134696295-134696297;chr5:134696298-134696470	chr5:134696288-134696289;chr5:134696294-134696295;chr5:134696297-134696298		37.33	50.42	45.03	50.88	37.44	50.00	43.53	46.97	43.48	42.63	44.19	42.77	42.99	42.03	46.27	48.44	44.13	42.55	41.38	47.62	50.00	41.72	43.28	46.86	48.48	45.10	43.16	42.21	43.41	40.23	38.00	40.00	37.93	41.63	42.95	38.21	43.26	43.56	0.30	0.635441	0.838192
K	intron_retention		chr19	-	chr19:59065604-59066354				chr19:59065603-59065604;chr19:59066354-59066355		4.51	6.28	5.22	2.00	3.23	2.53	0.00	0.00	0.00	0.00	0.63	0.00	0.62	0.00	0.00	0.72	0.00	0.00	2.05	3.67	2.14	1.06	4.60	0.00	8.82	2.30	8.33	0.00	1.88	0.00	2.88	13.04	5.22	3.30	4.26	0.71	3.63	2.59	-1.04	0.790402	1.000000
N	jcn_only_AA	SARAF	chr8	-	chr8:29924427-29927157;chr8:29921414-29927157	chr8:29924435-29927157		chr8:29921414-29924426;chr8:29924427-29924434	chr8:29921413-29921414;chr8:29924426-29924427		97.83	100.00	97.35	100.00	95.26	100.00	97.53	98.55	99.44	96.90	98.06	96.75	97.78	100.00	98.14	98.21	99.12	98.80	81.36	94.06	88.29	100.00	96.29	96.58	100.00	96.96	96.14	97.27	100.00	100.00	93.88	94.43	83.10	96.89	96.23	100.00	97.66	97.39	-0.26	0.367939	0.663989
K	alternative_last_exon	HLA-DRB1	chr6	-	chr6:32520837-32548023	chr6:32546882-32548023	chr6:32520767-32520836	chr6:32546546-32546881			98.49	98.27	98.37	98.37	97.71	98.51	99.95	99.91	100.00	100.00	100.00	100.00	98.84	100.00	100.00	98.78	100.00	100.00	92.61	88.57	99.02	89.35	88.04	87.56	97.63	98.36	97.96	95.72	94.45	95.71	86.49	90.91	84.81	79.03	80.59	85.21	97.95	98.42	0.48	0.989012	0.989012
N	jcn_only_AD	MYO9B	chr19	+	chr19:17186685-17212469	chr19:17187278-17212469		chr19:17186685-17187277	chr19:17186684-17186685		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	30.43	6.25	0.00	NA	16.67	NA	NA	NA	NA	5.88	12.50	0.00	0.00	0.00	0.00	0.489047	0.734825
K	intron_retention	P3H1	chr1	-	chr1:43220662-43220835				chr1:43220661-43220662;chr1:43220835-43220836		18.75	30.77	33.33	NA	20.00	NA	10.34	5.88	3.45	0.00	3.03	0.00	11.43	0.00	3.57	0.00	5.88	0.00	NA	18.18	20.00	NA	34.78	NA	NA	20.00	15.38	NA	30.00	NA	8.33	28.00	16.67	16.67	20.00	35.29	14.05	13.25	-0.80	0.872400	1.000000
N	cassette	HDAC3	chr5	-	chr5:141004933-141005760;chr5:141005332-141005760	chr5:141004933-141005579,chr5:141005332-141005579;chr5:141005639-141005760		chr5:141005580-141005638			97.73	91.78	90.41	91.67	91.55	NA	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	97.50	100.00	98.61	NA	88.89	85.71	95.12	90.48	94.57	88.89	100.00	89.47	91.80	100.00	95.40	100.00	92.59	85.33	83.87	89.47	94.74	97.37	95.89	95.16	-0.73	0.966689	0.991515
K	intron_retention	CTB-50L17.10	chr19	+	chr19:4501330-4501922				chr19:4501329-4501330;chr19:4501922-4501923		14.63	17.32	25.58	8.70	15.07	6.52	13.79	13.64	9.68	8.33	7.41	NA	10.00	9.52	7.69	8.33	0.00	NA	12.16	17.39	11.21	NA	14.29	NA	11.95	14.81	20.00	15.38	15.38	8.33	16.28	20.00	11.85	15.38	16.67	12.00	12.05	14.72	2.67	0.597200	1.000000
N	alternative_donor	HNRNPH3	chr10	+	chr10:70098400-70098896;chr10:70098427-70098896	chr10:70098445-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		64.52	58.33	68.42	58.33	60.00	NA	56.36	58.54	57.97	39.47	51.11	42.86	56.72	51.11	60.71	36.17	46.94	38.98	NA	71.74	68.42	64.58	67.35	60.42	NA	75.68	72.73	53.06	65.62	57.41	87.50	78.33	66.67	64.71	63.41	75.00	57.52	68.13	10.60	0.181355	0.563271
N	jcn_only_AA	CDK5RAP2	chr9	-	chr9:123151566-123152018	chr9:123151571-123152018		chr9:123151566-123151570	chr9:123151565-123151566		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	NA	100.00	NA	NA	97.03	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.00	100.00	100.00	100.00	100.00	100.00	0.00	0.779406	0.903965
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400787-46401041;chr11:46400787-46401018;chr11:46400787-46401003	chr11:46400787-46401044		chr11:46401004-46401018;chr11:46401019-46401041;chr11:46401042-46401044	chr11:46401018-46401019;chr11:46401041-46401042;chr11:46401044-46401045		0.00	0.00	0.00	0.00	2.86	NA	7.69	0.00	0.00	NA	3.12	NA	0.00	0.00	0.00	NA	3.33	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	HNRNPA3	chr2	+	chr2:178081500-178081587				chr2:178081499-178081500;chr2:178081587-178081588		7.02	12.20	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	1.35	3.51	0.00	0.00	0.00	0.00	0.93	1.90	4.17	1.92	0.00	1.20	1.37	1.98	0.00	0.82	0.82	0.996822	1.000000
N	cassette	SH3BP1	chr22	+	chr22:38041518-38043273	chr22:38041518-38042824;chr22:38042937-38043273		chr22:38042825-38042936			100.00	96.23	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	98.67	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	98.00	NA	100.00	100.00	100.00	100.00	98.04	NA	100.00	100.00	90.00	100.00	100.00	NA	100.00	100.00	0.00	0.225236	0.709176
K	alternative_acceptor	FAM195B	chr17	-	chr17:79781188-79782162	chr17:79781390-79782162		chr17:79781188-79781389	chr17:79781187-79781188		100.00	91.49	85.71	71.05	83.33	81.63	95.00	100.00	90.00	92.11	92.86	88.89	97.50	88.89	100.00	85.37	94.00	88.24	100.00	87.50	93.10	84.62	91.30	85.71	100.00	NA	86.67	81.25	88.10	89.36	100.00	94.12	94.87	88.46	84.62	89.58	96.25	100.00	3.75	0.721692	0.896004
N	jcn_only_AD	MAD1L1	chr7	-	chr7:1976534-1979723;chr7:1976534-1979373	chr7:1976534-1997263		chr7:1979374-1979723;chr7:1979724-1997263	chr7:1979723-1979724;chr7:1997263-1997264		41.67	57.48	57.14	40.91	50.67	38.10	66.67	NA	NA	46.15	60.00	36.36	55.77	80.00	NA	39.13	48.48	63.64	86.57	80.00	78.12	45.00	62.34	36.84	77.36	46.67	81.82	33.33	46.99	21.74	86.96	95.65	90.91	68.18	60.00	62.50	72.02	80.00	7.98	0.645425	0.818639
N	jcn_only_AD	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001919-30002104;chr16:30001127-30002104	chr16:30001969-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	NA	7.69	NA	0.00	NA	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	8.33	12.50	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	SGSH	chr17	-	chr17:78188128-78188413				chr17:78188127-78188128;chr17:78188413-78188414		5.71	0.00	8.57	NA	NA	NA	2.44	0.00	0.00	0.00	0.00	0.00	2.70	0.00	4.17	0.00	0.00	0.00	NA	7.14	NA	NA	3.33	0.00	0.00	5.26	0.00	0.00	9.09	NA	4.17	3.33	NA	3.12	8.70	0.00	1.22	4.71	3.50	0.667933	1.000000
N	alternative_last_exon		chr8	+	chr8:101163645-101164063,chr8:101163645-101164355;chr8:101163645-101165521	chr8:101163645-101164051	chr8:101165522-101166230	chr8:101164052-101164437			100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	97.83	100.00	92.31	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.53	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.180831	0.407692
N	cassette	MGAT4B	chr5	-	chr5:179226251-179226953	chr5:179226251-179226505;chr5:179226637-179226953		chr5:179226506-179226636			93.94	100.00	100.00	NA	100.00	NA	97.96	100.00	93.75	92.31	95.45	91.67	96.23	100.00	93.75	100.00	95.74	100.00	88.89	95.65	94.44	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.30	NA	95.00	95.45	88.89	96.77	100.00	100.00	96.23	97.83	1.59	0.287612	0.709176
K	alternative_last_exon	ARSB	chr5	-	chr5:78128515-78135178,chr5:78131731-78135178;chr5:78077798-78135178	chr5:78111938-78135178	chr5:78077675-78077797	chr5:78111334-78111937			26.67	64.71	13.56	NA	52.00	55.56	14.00	12.82	10.42	9.52	13.21	15.38	12.50	20.00	13.79	17.39	11.48	12.90	45.83	25.93	50.00	30.00	24.24	16.00	NA	32.00	16.00	15.79	23.53	40.00	27.27	22.58	50.00	13.64	13.33	9.76	45.83	26.30	-19.53	0.274513	0.491468
N	coord_cassette	PKN1	chr19	+	chr19:14562836-14574478	chr19:14562836-14568842;chr19:14568953-14569043;chr19:14569188-14574478		chr19:14568843-14568952;chr19:14569044-14569187			100.00	100.00	97.73	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	95.65	100.00	100.00	96.00	100.00	100.00	98.63	95.24	100.00	100.00	100.00	96.61	94.05	100.00	100.00	95.83	97.14	100.00	99.31	-0.69	0.110692	0.643829
K	intron_retention		chr20	-	chr20:25275667-25282854				chr20:25275666-25275667;chr20:25282854-25282855		4.76	7.81	NA	4.35	3.75	2.70	6.67	10.00	NA	10.00	6.67	0.00	4.69	0.00	NA	5.26	2.53	0.00	6.49	NA	0.00	0.00	10.43	5.88	4.07	23.08	6.25	0.00	5.00	0.00	20.00	NA	4.88	13.33	14.29	18.75	5.69	10.00	4.31	0.868440	1.000000
K	intron_retention	SNRPB	chr20	-	chr20:2442586-2443281				chr20:2442585-2442586;chr20:2443281-2443282		3.53	2.29	5.10	2.17	1.22	0.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	1.54	1.69	5.36	1.88	4.17	0.00	1.75	1.98	0.00	2.02	1.71	8.64	3.33	2.81	3.09	1.65	2.34	0.53	1.65	1.11	0.883171	1.000000
K	cassette	ZFYVE19	chr15	+	chr15:41102956-41105535	chr15:41102956-41104896;chr15:41105101-41105535		chr15:41104897-41105100			64.00	57.80	57.50	64.29	60.23	69.23	84.00	75.00	88.89	NA	70.83	NA	79.31	NA	85.71	NA	70.37	NA	96.00	100.00	78.43	NA	89.74	NA	87.67	100.00	86.21	81.82	94.29	100.00	73.68	83.33	80.00	73.33	83.87	80.00	82.00	75.00	-7.00	0.852580	0.950337
K	intron_retention		chr16	-	chr16:1499329-1500497				chr16:1499328-1499329;chr16:1500497-1500498		8.20	5.26	15.56	7.14	9.43	NA	0.00	0.00	0.88	3.03	0.83	0.00	0.86	1.92	3.26	0.00	1.85	0.00	11.11	13.16	6.82	8.70	7.53	9.09	17.50	8.16	11.49	7.69	8.70	10.00	19.44	9.68	21.43	11.94	11.83	15.58	8.18	8.18	-0.00	0.998574	1.000000
N	alternative_acceptor	CYTH2	chr19	+	chr19:48978207-48981322;chr19:48978207-48981325	chr19:48978207-48980973		chr19:48980974-48981322;chr19:48981323-48981325	chr19:48981322-48981323;chr19:48981325-48981326		6.56	4.55	6.35	3.45	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	1.79	3.12	5.88	6.82	3.45	6.38	4.00	5.88	4.55	4.69	2.94	5.26	4.17	8.33	8.93	11.43	3.23	5.71	5.77	3.83	5.21	1.38	0.980463	0.994621
K	jcn_only_AA	FAM89B	chr11	+	chr11:65340432-65340872;chr11:65340432-65340823	chr11:65340432-65340833		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		65.71	81.82	62.00	NA	68.18	NA	56.25	65.52	65.38	44.83	63.89	66.67	57.89	58.62	61.11	61.54	62.79	66.67	50.00	53.57	64.15	NA	46.43	NA	43.75	48.00	59.26	53.85	41.18	72.73	81.82	52.38	58.33	52.38	64.86	60.00	57.07	62.07	5.00	0.570205	0.796382
K	intron_retention	H3F3B	chr17	-	chr17:73774805-73774890				chr17:73774804-73774805;chr17:73774890-73774891		2.58	2.08	2.80	0.94	0.38	0.69	0.00	0.00	0.12	0.00	0.00	0.00	0.15	0.15	0.14	0.12	0.10	0.04	2.41	2.18	4.19	1.17	1.16	0.84	1.05	1.55	1.16	0.49	0.37	0.33	7.14	5.89	7.41	0.97	0.84	0.61	1.56	1.87	0.30	0.999624	1.000000
K	jcn_only_AA	NSUN5	chr7	-	chr7:72717522-72717596	chr7:72717527-72717596		chr7:72717522-72717526	chr7:72717521-72717522		93.33	85.35	85.29	92.31	87.32	93.42	90.91	90.91	87.50	100.00	91.30	NA	97.62	100.00	90.24	100.00	95.65	84.62	94.64	100.00	87.72	85.71	88.10	84.62	88.82	95.24	89.74	83.33	84.38	90.32	91.89	84.21	88.07	NA	90.48	100.00	89.86	94.28	4.42	0.109334	0.663989
K	intron_retention		chr6	+	chr6:25972328-25973281				chr6:25972327-25972328;chr6:25973281-25973282		1.94	0.00	6.67	NA	0.00	0.00	2.17	0.36	0.00	0.00	0.00	0.00	0.00	0.84	2.34	0.00	0.00	3.85	0.00	2.38	3.45	0.00	0.00	3.57	0.00	0.47	4.84	0.00	0.00	1.79	3.45	3.75	0.00	1.72	2.44	3.70	0.00	1.39	1.39	0.209276	1.000000
K	coord_cassette	ANXA2	chr15	-	chr15:60678286-60690141	chr15:60678286-60688478;chr15:60688627-60689456;chr15:60689538-60690141		chr15:60688479-60688626;chr15:60689457-60689537			0.80	0.59	0.22	12.50	4.52	24.24	1.14	1.20	0.66	3.26	1.10	2.27	0.93	1.52	1.33	4.57	0.91	2.16	2.56	0.90	2.37	6.90	2.15	5.76	0.00	0.67	0.34	8.39	3.90	7.39	0.67	0.56	2.63	2.46	1.70	2.16	1.03	0.85	-0.18	0.475416	0.692687
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075931-100076416	chr7:100075828-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		10.96	3.85	10.94	NA	14.71	20.00	12.12	17.54	22.78	22.50	19.30	17.14	6.15	20.39	17.50	15.38	12.73	14.29	7.14	6.25	13.16	16.67	8.89	0.00	9.52	11.59	7.27	20.00	10.53	0.00	0.00	10.71	3.33	7.69	0.00	10.26	6.64	11.28	4.63	0.256973	0.709013
N	jcn_only_AA	RGL2	chr6	-	chr6:33262808-33262903	chr6:33262823-33262903		chr6:33262808-33262822	chr6:33262807-33262808		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	92.86	100.00	NA	100.00	NA	100.00	100.00	96.23	NA	100.00	NA	94.74	100.00	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.630891	0.838179
N	intron_retention	TCIRG1	chr11	+	chr11:67816762-67817084				chr11:67816761-67816762;chr11:67817084-67817085		100.00	100.00	100.00	96.34	96.67	94.12	91.67	87.50	NA	NA	93.75	NA	100.00	84.38	100.00	100.00	100.00	NA	94.68	100.00	97.84	92.50	99.12	100.00	100.00	93.00	96.94	100.00	96.91	97.22	97.62	97.27	100.00	100.00	96.30	95.74	100.00	95.31	-4.69	0.452833	1.000000
N	jcn_only_AA		chr2	+	chr2:33784098-33809963;chr2:33784098-33787522;chr2:33784098-33786700;chr2:33784098-33793050	chr2:33784098-33787795		chr2:33786701-33787522;chr2:33787523-33787795;chr2:33787796-33793050;chr2:33793051-33809963	chr2:33787522-33787523;chr2:33787795-33787796;chr2:33793050-33793051;chr2:33809963-33809964		100.00	100.00	NA	100.00	100.00	100.00	95.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.31	NA	96.88	NA	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	98.64	100.00	100.00	0.00	0.835546	0.935389
K	intron_retention	NOC2L	chr1	-	chr1:881034-881552				chr1:881033-881034;chr1:881552-881553		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	4.88	0.00	1.79	0.00	0.00	NA	0.00	0.00	1.72	0.00	5.88	3.85	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.696299	1.000000
K	intron_retention	KAT8	chr16	+	chr16:31131836-31138355				chr16:31131835-31131836;chr16:31138355-31138356		20.00	16.67	16.67	NA	4.17	NA	18.92	25.00	12.50	27.78	30.30	45.45	21.21	10.00	18.18	33.33	30.77	30.00	0.00	20.00	0.00	11.11	9.38	33.33	NA	28.57	9.80	16.67	12.50	13.33	30.77	11.90	30.77	27.78	11.43	25.00	18.92	22.50	3.58	0.956527	1.000000
N	jcn_only_AA		chr19	+	chr19:56186802-56189872;chr19:56186802-56188411	chr19:56186802-56189892		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		92.11	100.00	100.00	NA	100.00	NA	83.78	84.44	92.31	82.05	87.80	100.00	85.06	92.86	81.08	89.66	89.69	95.24	NA	100.00	100.00	100.00	90.70	NA	100.00	93.02	93.33	100.00	96.55	NA	84.21	85.19	NA	95.83	95.24	93.33	92.53	92.48	-0.05	0.838414	0.936335
N	cassette	PPFIBP2	chr11	+	chr11:7663658-7670030	chr11:7663658-7669617;chr11:7669769-7670030		chr11:7669618-7669768			NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	NA	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention		chr19	+	chr19:14518042-14518719				chr19:14518041-14518042;chr19:14518719-14518720		2.22	0.00	3.03	0.00	7.69	0.00	0.00	0.00	0.00	0.89	0.00	0.59	1.39	0.00	0.00	1.23	3.03	0.00	3.23	5.00	0.00	5.88	11.11	0.00	0.00	2.27	0.00	0.00	2.00	0.00	2.94	1.33	0.00	4.35	3.23	2.13	0.00	2.25	2.25	0.660697	1.000000
N	alternative_donor	NDUFB9	chr8	+	chr8:125551517-125555327	chr8:125551529-125555327		chr8:125551517-125551528	chr8:125551516-125551517		100.00	96.55	100.00	100.00	99.11	100.00	98.74	100.00	100.00	100.00	99.06	98.04	98.18	100.00	100.00	97.81	99.38	100.00	100.00	92.86	98.28	100.00	97.27	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	99.08	100.00	100.00	100.00	98.91	100.00	1.09	0.969477	0.992008
N	jcn_only_AA	CD6,PLCB3	chr11	+	chr11:64029549-64029878	chr11:64029549-64029657		chr11:64029658-64029878	chr11:64029878-64029879		6.25	11.54	13.56	NA	NA	NA	2.50	3.70	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	19.05	0.00	9.09	0.00	NA	21.05	16.67	2.27	0.00	0.00	NA	21.43	18.92	NA	0.00	0.00	21.05	7.02	11.46	4.44	0.702374	0.867936
K	alternative_acceptor	SNX32	chr11	+	chr11:65620430-65623599	chr11:65620430-65620752		chr11:65620753-65623599	chr11:65623599-65623600		100.00	100.00	100.00	100.00	100.00	100.00	96.17	100.00	95.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.95	100.00	100.00	100.00	100.00	100.00	96.03	94.81	98.01	96.61	100.00	100.00	99.00	100.00	1.00	0.498069	0.791230
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49949952-49950280;chr19:49950002-49950280;chr19:49949853-49950280	chr19:49950052-49950280		chr19:49949853-49949951;chr19:49949952-49950001;chr19:49950002-49950051	chr19:49949852-49949853;chr19:49949951-49949952;chr19:49950001-49950002		3.23	1.77	2.38	0.00	2.04	4.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.02	4.17	2.63	0.00	4.76	NA	0.92	0.00	2.44	0.00	0.00	5.56	7.32	4.08	1.90	0.00	0.00	0.00	0.97	1.61	0.65	0.280180	0.709013
N	jcn_only_AA		chr1	+	chr1:241750039-241750202;chr1:241750039-241752074;chr1:241750039-241751078	chr1:241750039-241752049		chr1:241750203-241751078;chr1:241751079-241752049;chr1:241752050-241752074	chr1:241751078-241751079;chr1:241752049-241752050;chr1:241752074-241752075		97.37	100.00	100.00	95.04	100.00	95.89	100.00	98.18	100.00	100.00	96.67	100.00	100.00	96.43	100.00	99.51	100.00	100.00	93.75	96.92	92.86	96.09	97.83	97.63	NA	97.14	100.00	98.33	100.00	99.07	92.31	95.24	100.00	97.34	98.90	97.95	100.00	97.03	-2.97	0.160876	0.663989
K	intron_retention		chr3	+	chr3:52550785-52550999				chr3:52550784-52550785;chr3:52550999-52551000		34.59	46.26	34.26	35.71	40.96	50.00	4.27	2.02	0.00	1.90	4.79	1.26	8.80	7.23	3.80	4.81	9.08	2.60	44.23	34.74	41.67	26.87	36.60	22.64	36.33	19.23	30.95	13.68	26.19	16.23	8.00	11.27	45.83	26.46	35.28	22.34	40.28	13.62	-26.66	0.362320	1.000000
N	intron_retention		chr6	-	chr6:132779464-132779594				chr6:132779463-132779464;chr6:132779594-132779595		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.11	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
N	cassette	SNRNP200	chr2	-	chr2:96943454-96943974	chr2:96943454-96943544;chr2:96943689-96943974		chr2:96943545-96943688			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.77	100.00	100.00	91.67	98.08	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	PRR13,RP11-793H13.8	chr12	+	chr12:53835602-53836478;chr12:53835577-53836478	chr12:53835585-53836478		chr12:53835577-53835584;chr12:53835585-53835601	chr12:53835576-53835577;chr12:53835584-53835585		7.46	16.33	13.50	4.55	11.11	NA	17.98	9.88	15.92	10.61	14.44	10.53	18.80	9.86	13.82	11.50	13.22	10.00	15.15	7.69	12.22	10.61	15.56	14.04	31.58	11.63	10.97	15.52	11.32	18.18	6.11	8.52	6.67	14.47	11.96	14.77	17.16	8.78	-8.38	0.040419	0.474054
N	jcn_only_AA	ARNT	chr1	-	chr1:150786713-150788734	chr1:150786716-150788734		chr1:150786713-150786715	chr1:150786712-150786713		100.00	100.00	100.00	NA	NA	NA	100.00	97.73	100.00	100.00	100.00	100.00	96.67	97.78	95.56	97.22	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.91	100.00	100.00	93.75	100.00	NA	100.00	100.00	96.00	100.00	98.89	-1.11	0.482593	0.741163
K	intron_retention	GBA	chr1	-	chr1:155206080-155209763				chr1:155206079-155206080;chr1:155209763-155209764		95.65	92.65	96.40	95.24	95.56	94.12	95.21	96.09	96.69	90.91	95.54	93.33	95.61	97.09	94.83	95.65	90.59	88.37	88.57	95.18	94.00	92.86	96.55	96.43	100.00	96.69	96.00	94.87	94.64	89.47	96.97	97.39	97.30	92.65	95.06	93.75	95.41	96.39	0.98	0.962845	1.000000
K	alternative_donor	C18orf8	chr18	+	chr18:21109263-21109598	chr18:21109387-21109598		chr18:21109263-21109386	chr18:21109262-21109263		8.33	0.00	7.55	0.00	5.00	0.00	9.09	12.12	3.70	18.18	19.05	5.56	0.00	8.11	0.00	11.54	13.33	0.00	0.00	7.69	4.35	23.81	5.13	6.67	NA	5.88	4.55	15.79	12.50	0.00	5.33	5.81	5.26	18.18	14.29	7.55	0.00	7.90	7.90	0.052385	0.402153
N	jcn_only_AD	CREBZF	chr11	-	chr11:62371514-62371595	chr11:62371514-62371584		chr11:62371585-62371595	chr11:62371595-62371596		100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	96.77	100.00	97.44	100.00	100.00	0.00	0.948252	0.971461
N	alternative_last_exon	C1orf43	chr1	-	chr1:154184822-154184933;chr1:154180125-154184933	chr1:154184855-154184933	chr1:154179182-154180124	chr1:154184210-154184854			97.06	88.46	97.92	78.57	90.32	47.62	98.21	97.37	96.72	97.96	96.92	97.62	98.28	97.37	98.41	98.33	98.31	94.44	64.29	96.97	88.89	96.55	97.83	97.22	46.67	97.06	97.83	96.30	93.02	96.43	95.83	97.83	75.00	97.87	97.92	98.33	81.73	97.06	15.33	0.078805	0.281549
K	cassette	TNK2	chr3	-	chr3:195609200-195610027	chr3:195609200-195609315;chr3:195609399-195610027		chr3:195609316-195609398			0.00	10.00	3.57	NA	NA	NA	3.85	2.99	6.06	NA	0.00	NA	2.86	2.88	5.41	NA	10.53	NA	NA	3.92	NA	NA	0.00	NA	0.00	1.54	0.00	NA	NA	NA	3.57	4.00	NA	7.14	0.00	9.09	3.35	2.94	-0.42	0.487967	0.774715
K	intron_retention		chr16	-	chr16:1501718-1502755				chr16:1501717-1501718;chr16:1502755-1502756		10.42	9.09	8.82	NA	0.00	NA	1.27	0.00	0.00	2.99	2.88	2.70	3.61	5.88	4.48	2.38	2.86	0.00	15.38	0.00	0.00	0.00	2.74	6.67	30.00	20.59	10.53	9.68	3.45	5.88	6.25	8.00	NA	11.67	10.34	9.23	9.09	6.06	-3.03	0.657392	1.000000
K	intron_retention		chr10	+	chr10:114186618-114186975				chr10:114186617-114186618;chr10:114186975-114186976		3.39	0.00	6.36	0.85	1.25	0.81	0.00	0.00	0.00	1.04	1.82	0.00	0.00	0.00	2.70	1.25	1.61	0.00	0.00	3.64	3.39	1.79	3.64	3.30	0.00	1.61	3.45	0.94	0.00	2.86	3.26	2.67	0.00	1.90	2.78	5.10	0.00	2.44	2.44	0.387330	1.000000
K	alternative_last_exon	CCNC	chr6	-	chr6:99991481-99992987;chr6:99991486-99992987	chr6:99992150-99992987	chr6:99990256-99991485	chr6:99991656-99992149			3.45	0.00	2.86	2.70	0.00	2.08	3.85	2.27	4.35	4.08	3.08	1.82	1.85	5.26	4.65	6.35	4.92	4.00	0.00	1.82	1.92	1.79	1.28	1.49	0.00	2.13	1.41	5.41	1.69	3.17	0.00	1.47	0.00	2.60	1.23	2.04	0.00	2.20	2.20	0.144255	0.353045
N	jcn_only_AD	SLC12A8	chr3	-	chr3:49147796-49147880;chr3:49147796-49147948	chr3:49147796-49147876		chr3:49147877-49147880;chr3:49147881-49147948	chr3:49147880-49147881;chr3:49147948-49147949		95.65	100.00	96.30	100.00	97.73	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	94.00	95.12	100.00	100.00	100.00	95.00	100.00	100.00	97.56	90.48	94.12	97.22	93.18	93.88	98.33	100.00	87.50	94.23	100.00	97.83	-2.17	0.399771	0.664304
N	intron_retention		chr19	-	chr19:47112504-47113415				chr19:47112503-47112504;chr19:47113415-47113416		100.00	100.00	91.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	98.50	100.00	100.00	100.00	100.00	100.00	96.23	100.00	100.00	99.23	100.00	95.19	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
N	jcn_only_AA	SUGP2	chr19	-	chr19:19104609-19105174;chr19:19104550-19105174	chr19:19101959-19105174		chr19:19101959-19104549;chr19:19104550-19104608	chr19:19101958-19101959;chr19:19104549-19104550		0.00	6.35	4.26	0.00	0.00	0.00	15.38	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	3.33	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	6.10	0.00	0.00	0.00	4.71	0.00	-4.71	0.076582	0.663989
N	cassette	CDK16	chrX	+	chrX:47086103-47086392	chrX:47086103-47086210;chrX:47086309-47086392		chrX:47086211-47086308			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	96.23	100.00	94.12	96.88	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	WDR83	chr19	+	chr19:12781100-12783660;chr19:12781100-12781332	chr19:12781100-12781376					100.00	100.00	100.00	100.00	83.33	NA	100.00	NA	90.00	NA	100.00	NA	100.00	NA	NA	100.00	NA	NA	90.00	100.00	93.75	100.00	96.77	NA	100.00	100.00	95.24	NA	100.00	NA	100.00	93.75	90.48	100.00	96.00	100.00	100.00	100.00	0.00	0.174849	0.663989
N	cassette	UBE2A	chrX	+	chrX:118709364-118716559;chrX:118709364-118716550	chrX:118709364-118715469;chrX:118715560-118716550,chrX:118715560-118716559		chrX:118715470-118715559			76.79	59.09	77.19	80.00	92.00	93.33	90.57	96.19	95.45	94.20	97.10	95.65	94.44	97.14	94.34	97.56	100.00	94.32	81.82	77.94	85.71	93.02	93.33	93.02	60.00	86.49	95.45	97.06	100.00	91.11	78.00	74.55	88.24	88.06	90.00	86.42	85.03	82.25	-2.78	0.414590	0.727796
N	jcn_only_AD	AOAH	chr7	-	chr7:36634037-36655985;chr7:36634037-36634194;chr7:36634037-36647862	chr7:36634037-36637240		chr7:36634195-36637240;chr7:36637241-36647862;chr7:36647863-36655985	chr7:36637240-36637241;chr7:36647862-36647863;chr7:36655985-36655986		0.00	0.00	2.06	0.00	0.00	NA	0.00	2.53	0.00	0.00	0.00	0.00	0.00	5.41	2.68	0.00	0.00	0.00	5.26	0.00	0.00	3.39	0.00	1.94	0.00	8.82	3.25	0.00	0.00	0.00	0.00	4.63	6.90	1.94	3.17	1.58	0.00	1.26	1.26	0.706471	0.847650
N	alternative_donor	NTAN1	chr16	-	chr16:15138265-15141274;chr16:15138265-15140213	chr16:15138265-15141298		chr16:15140214-15141274;chr16:15141275-15141298	chr16:15141274-15141275;chr16:15141298-15141299		94.74	100.00	97.56	100.00	96.23	93.33	97.30	95.77	97.22	99.00	98.24	96.70	98.91	93.24	97.22	94.81	97.06	98.44	100.00	98.08	97.44	97.83	96.72	98.33	95.83	87.67	94.87	96.15	97.12	100.00	92.31	96.88	88.00	93.27	92.68	96.40	98.10	93.99	-4.11	0.227841	0.597907
N	jcn_only_AA	PLXND1	chr3	-	chr3:129275314-129275459;chr3:129274387-129275459;chr3:129275318-129275459	chr3:129275272-129275459		chr3:129274387-129275271;chr3:129275272-129275313;chr3:129275314-129275317	chr3:129274386-129274387;chr3:129275271-129275272;chr3:129275313-129275314		92.26	83.16	89.98	80.65	81.55	53.85	98.12	95.69	93.04	96.86	96.62	100.00	96.79	95.51	91.67	95.09	97.25	96.30	79.93	87.50	88.15	87.36	86.08	88.60	78.26	98.02	93.15	91.87	91.59	95.56	84.21	85.79	63.55	90.38	91.18	90.43	81.55	93.89	12.34	0.163983	0.663989
K	intron_retention		chr8	-	chr8:145651156-145651408				chr8:145651155-145651156;chr8:145651408-145651409		1.94	1.08	4.31	0.00	1.53	0.00	0.49	0.00	0.00	0.93	0.56	0.00	0.00	1.82	2.53	1.25	0.91	0.00	0.76	2.82	1.68	5.45	4.03	4.26	0.00	3.00	2.98	2.20	1.42	1.42	2.86	2.78	0.75	1.56	3.19	2.33	0.62	2.38	1.76	0.149877	1.000000
K	cassette	SEPW1	chr19	+	chr19:48282072-48284120	chr19:48282072-48283981;chr19:48284007-48284120		chr19:48283982-48284006			91.38	100.00	91.78	100.00	97.83	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.16	100.00	98.00	100.00	95.24	90.91	91.82	80.00	97.56	71.43	100.00	98.84	93.33	100.00	96.97	100.00	86.36	87.72	79.55	100.00	89.58	88.24	100.00	95.11	-4.89	0.773127	0.932221
K	cassette	ATP6AP2	chrX	+	chrX:40440355-40450485	chrX:40440355-40448237;chrX:40448369-40450485		chrX:40448238-40448368			97.59	100.00	98.52	NA	100.00	NA	97.76	97.71	98.53	98.40	98.66	99.74	98.35	98.37	99.05	97.90	97.94	99.19	NA	99.28	95.00	98.82	98.24	98.79	NA	98.15	100.00	96.47	99.22	100.00	97.75	96.69	100.00	98.94	98.84	98.59	99.17	97.95	-1.22	0.228415	0.709176
N	cassette	BCL2L12	chr19	+	chr19:50172373-50176954;chr19:50172422-50176954	chr19:50172422-50173472,chr19:50172373-50173472;chr19:50173746-50176954		chr19:50173473-50173745			91.18	87.72	95.00	100.00	95.92	75.00	94.44	100.00	88.89	NA	100.00	NA	93.55	100.00	100.00	100.00	100.00	NA	92.68	86.21	87.23	NA	91.67	NA	100.00	100.00	93.75	NA	95.65	NA	93.75	84.48	82.61	NA	90.00	100.00	93.12	96.88	3.76	0.347187	0.709176
N	cassette	AP5Z1	chr7	+	chr7:4829561-4830440	chr7:4829561-4830089;chr7:4830223-4830440		chr7:4830090-4830222			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.00	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	87.50	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	PTPN12	chr7	+	chr7:77265167-77267940	chr7:77265167-77266334;chr7:77266366-77267940		chr7:77266335-77266365			98.59	100.00	98.70	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	99.34	100.00	98.46	100.00	100.00	100.00	100.00	100.00	98.66	100.00	100.00	100.00	100.00	NA	98.44	99.41	100.00	100.00	100.00	100.00	98.22	90.91	99.06	100.00	98.12	100.00	98.62	-1.38	0.670084	0.880013
K	alternative_acceptor	PDLIM7	chr5	-	chr5:176918927-176919405	chr5:176918978-176919405		chr5:176918927-176918977	chr5:176918926-176918927		1.28	0.00	3.45	NA	3.23	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	2.00	0.00	0.00	2.22	4.88	NA	7.89	NA	NA	3.85	6.67	NA	2.63	NA	4.76	2.17	0.00	0.00	1.61	4.55	0.00	1.75	1.75	0.054709	0.570243
K	intron_retention		chr14	-	chr14:103406662-103410227				chr14:103406661-103406662;chr14:103410227-103410228		6.45	14.29	12.50	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	NA	3.85	NA	8.33	10.00	10.00	0.00	4.76	7.14	0.00	7.69	18.18	6.67	16.67	NA	13.79	4.55	8.11	0.00	4.30	4.30	0.688377	1.000000
N	alternative_donor	CTSD	chr11	-	chr11:1782699-1792620;chr11:1782699-1785021	chr11:1782699-1783362		chr11:1783363-1785021;chr11:1785022-1792620	chr11:1785021-1785022;chr11:1792620-1792621		4.08	1.69	3.23	NA	0.00	NA	0.78	1.64	1.19	0.61	1.23	0.00	1.02	2.35	2.86	0.88	0.89	0.00	5.56	4.65	0.00	0.00	2.88	0.00	4.88	4.55	3.23	0.00	2.74	0.00	1.72	2.50	4.55	1.49	2.41	0.00	3.12	3.21	0.09	0.937300	0.984606
K	intron_retention	RPS19BP1	chr22	-	chr22:39925629-39925824				chr22:39925628-39925629;chr22:39925824-39925825		5.81	3.47	4.03	2.94	2.56	4.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.74	0.81	1.09	0.00	2.33	4.55	2.93	2.22	2.52	2.56	2.81	1.75	2.59	1.32	1.60	1.89	9.92	4.19	4.06	0.92	2.74	3.41	2.57	3.15	0.58	0.682291	1.000000
N	cassette	ADRM1	chr20	+	chr20:60878838-60881252;chr20:60878106-60881252	chr20:60878838-60879516,chr20:60878106-60879516;chr20:60879634-60881252		chr20:60879517-60879633			76.67	76.37	74.07	91.27	89.09	86.36	92.04	93.15	90.98	94.38	91.58	94.37	96.72	95.49	90.62	91.08	92.86	90.32	89.53	81.65	80.95	88.89	89.45	86.06	73.08	84.71	79.41	88.82	92.13	91.43	80.21	74.63	90.18	90.91	93.78	85.71	89.86	83.18	-6.67	0.841507	0.946975
N	alternative_acceptor	MKL2,RNF40	chr16	+	chr16:30783512-30785258;chr16:30783512-30785634	chr16:30783512-30785135		chr16:30785136-30785258;chr16:30785259-30785634	chr16:30785258-30785259;chr16:30785634-30785635		3.92	2.13	1.49	0.00	8.11	NA	2.33	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.94	0.00	3.77	0.00	4.76	0.00	1.61	0.00	0.00	0.00	1.96	2.53	0.00	2.44	1.82	5.26	2.10	0.98	-1.12	0.626162	0.855896
K	cassette	AGTRAP	chr1	+	chr1:11805895-11807496	chr1:11805895-11805986;chr1:11806281-11807496		chr1:11805987-11806280			3.26	2.27	7.83	5.88	3.33	NA	3.26	5.79	6.74	3.17	2.33	2.38	2.63	4.35	5.38	5.71	2.90	2.78	0.00	3.09	2.63	7.69	3.45	7.14	0.00	6.48	4.80	6.90	3.57	6.82	5.56	4.76	3.57	6.38	5.08	11.11	2.45	4.96	2.50	0.008995	0.294923
K	intron_retention	HLA-F	chr6	+	chr6:29691705-29691949				chr6:29691704-29691705;chr6:29691949-29691950		7.65	2.78	4.50	2.90	2.78	1.60	0.00	0.26	0.32	0.33	0.00	0.54	1.12	0.99	1.16	0.00	0.00	0.49	5.00	5.91	1.97	7.55	3.92	10.23	0.00	4.07	3.10	6.74	2.04	5.37	4.18	3.16	0.00	10.34	7.50	8.68	0.56	4.12	3.56	0.456469	1.000000
N	alternative_donor		chr11	-	chr11:62457994-62458093	chr11:62457994-62458083		chr11:62458084-62458093	chr11:62458093-62458094		100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.42	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.318012	0.650093
K	intron_retention	CTDSP2	chr12	-	chr12:58217511-58217686				chr12:58217510-58217511;chr12:58217686-58217687		4.90	0.00	4.25	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	NA	1.96	2.94	0.00	3.57	0.00	0.00	5.26	2.88	0.00	0.00	0.00	3.57	5.33	NA	0.00	0.00	1.28	0.00	2.76	2.76	0.191499	1.000000
K	jcn_only_AD	MINK1	chr17	+	chr17:4789913-4790404	chr17:4789922-4790404		chr17:4789913-4789921	chr17:4789912-4789913		80.00	100.00	86.05	NA	NA	NA	98.00	90.91	94.87	94.44	90.00	100.00	93.88	100.00	91.67	79.31	92.54	NA	NA	81.82	NA	NA	100.00	NA	100.00	100.00	93.10	NA	100.00	NA	NA	92.86	NA	85.71	85.71	87.50	99.00	90.91	-8.09	0.162578	0.657607
N	cassette	HNRNPUL2,HNRNPUL2-BSCL2	chr11	-	chr11:62491199-62494090	chr11:62491199-62491385;chr11:62491463-62494090		chr11:62491386-62491462			94.29	100.00	89.29	NA	100.00	NA	100.00	96.83	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	98.46	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	95.45	88.00	95.12	NA	94.87	95.65	100.00	100.00	97.19	-2.81	0.112131	0.709176
K	intron_retention	ADCY7	chr16	+	chr16:50342704-50343458				chr16:50342703-50342704;chr16:50343458-50343459		1.30	0.00	0.00	NA	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	NA	NA	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.78	0.00	1.30	0.00	0.00	0.00	0.00	0.482494	1.000000
N	jcn_only_AD		chr3	-	chr3:129284382-129284740	chr3:129284382-129284729		chr3:129284730-129284740	chr3:129284740-129284741		98.28	100.00	94.76	NA	90.91	NA	100.00	98.55	96.40	100.00	98.80	100.00	99.33	100.00	97.78	99.02	100.00	100.00	93.55	96.49	100.00	100.00	96.95	100.00	90.24	92.31	95.30	100.00	97.22	96.55	NA	91.07	87.50	96.36	98.08	95.88	96.44	98.28	1.84	0.458911	0.712187
K	intron_retention	SLC12A9	chr7	+	chr7:100458885-100459013				chr7:100458884-100458885;chr7:100459013-100459014		0.00	18.75	9.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	NA	4.35	NA	9.52	0.00	6.06	NA	10.00	NA	NA	6.90	15.38	NA	15.38	NA	4.76	0.00	-4.76	0.246529	1.000000
K	intron_retention	DHX38	chr16	+	chr16:72144977-72146311				chr16:72144976-72144977;chr16:72146311-72146312		0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	1.54	0.00	0.00	0.00	3.45	2.38	2.04	0.00	6.12	4.65	3.51	0.00	3.85	6.25	0.00	0.00	0.00	0.688647	1.000000
N	alternative_donor		chr19	-	chr19:6381862-6383330	chr19:6381862-6383321		chr19:6383322-6383330	chr19:6383330-6383331		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	95.65	100.00	98.25	100.00	100.00	100.00	97.87	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	PRDX1	chr1	-	chr1:45980568-45984661				chr1:45980567-45980568;chr1:45984661-45984662		77.65	81.88	75.38	88.44	86.42	92.96	72.18	79.41	69.01	71.27	67.61	65.92	71.96	70.59	73.33	69.80	69.49	68.93	73.06	69.43	70.47	77.89	76.70	80.21	82.22	71.69	77.30	76.72	76.16	78.43	68.48	66.77	76.22	85.22	79.17	77.24	74.64	71.14	-3.50	0.546591	1.000000
K	jcn_only_AA	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10943667;chr19:10941055-10942979	chr19:10941055-10941653		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		74.12	68.83	73.25	74.42	66.67	78.95	68.87	75.70	76.54	66.07	69.64	74.29	78.38	75.37	75.29	69.33	74.24	75.00	78.08	71.96	78.05	80.77	76.62	81.13	61.67	75.86	72.78	70.83	71.43	86.49	75.19	71.84	81.82	71.96	74.14	76.98	73.47	75.28	1.81	0.604195	0.816233
K	jcn_only_AA	DBNL,UPP1	chr7	+	chr7:44098080-44098500	chr7:44098080-44098476		chr7:44098477-44098500	chr7:44098500-44098501		6.35	4.82	0.00	3.57	0.00	0.00	4.32	2.18	2.08	4.55	3.23	3.25	1.68	5.13	3.05	1.91	3.27	2.74	3.23	5.75	4.29	5.00	5.00	3.70	0.00	2.97	3.08	2.63	1.90	4.85	0.00	0.00	0.00	0.00	0.00	0.00	2.46	4.05	1.59	0.317176	0.663989
K	intron_retention	RP5-890E16.4	chr17	-	chr17:46137823-46137917				chr17:46137822-46137823;chr17:46137917-46137918		89.61	93.27	86.98	100.00	89.81	90.62	85.16	86.99	88.24	87.50	90.38	90.32	84.40	90.18	89.44	89.74	87.04	83.78	93.33	90.21	89.31	86.00	86.96	83.33	85.11	88.61	88.19	87.69	89.06	89.39	93.25	92.11	90.22	89.11	83.94	82.22	87.69	89.90	2.21	0.866881	1.000000
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49950675-49951083;chr19:49950725-49951083	chr19:49950678-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		6.15	4.26	4.76	10.53	6.76	5.71	3.64	3.12	0.00	2.86	0.00	0.00	0.00	0.00	3.92	0.00	0.00	3.57	4.69	3.57	5.30	13.33	10.87	9.52	4.85	0.00	6.33	4.35	6.25	0.00	9.23	8.22	3.05	6.45	5.88	2.08	3.95	3.34	-0.61	0.876646	0.952764
N	jcn_only_AD		chr2	-	chr2:27590069-27590288;chr2:27590069-27591520	chr2:27590069-27590323					100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	LYPLA2	chr1	+	chr1:24117741-24119146				chr1:24117740-24117741;chr1:24119146-24119147		0.00	9.09	4.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.69	0.00	25.00	0.00	4.76	0.00	8.00	0.00	0.00	7.14	NA	4.17	6.98	0.00	5.54	0.00	-5.54	0.473240	1.000000
K	intron_retention	MRPL28	chr16	-	chr16:418415-418500				chr16:418414-418415;chr16:418500-418501		4.94	0.68	2.27	0.00	1.75	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	1.47	1.81	0.00	1.20	0.00	0.00	0.00	1.22	0.00	0.00	0.00	10.75	7.37	3.55	0.00	1.69	0.00	0.34	0.73	0.39	0.573155	1.000000
N	cassette	CLK3	chr15	+	chr15:74917360-74919692	chr15:74917360-74918142;chr15:74918310-74919692		chr15:74918143-74918309			100.00	100.00	97.03	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	96.67	100.00	93.18	97.01	98.15	100.00	100.00	100.00	100.00	100.00	98.00	96.36	96.47	100.00	100.00	96.43	97.83	100.00	100.00	0.00	0.839618	0.946503
N	jcn_only_AA	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668567;chr17:79668162-79668244;chr17:79668162-79668537	chr17:79668162-79668273		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		3.88	0.00	3.97	3.85	2.33	0.00	2.00	2.00	1.54	2.44	2.41	4.65	2.00	0.00	2.53	2.68	0.00	6.00	0.00	3.37	1.49	0.00	1.44	3.00	0.00	5.62	2.40	3.88	4.31	2.44	3.01	0.54	0.95	3.94	0.94	3.09	0.47	3.19	2.71	0.039710	0.663989
N	jcn_only_AD	SMARCB1	chr22	+	chr22:24144152-24145481;chr22:24143323-24145481;chr22:24143158-24145481	chr22:24143269-24145481		chr22:24143158-24143268;chr22:24143269-24143322;chr22:24143323-24144151	chr22:24143157-24143158;chr22:24143268-24143269;chr22:24143322-24143323		94.74	95.24	100.00	100.00	97.62	100.00	98.21	96.67	100.00	100.00	98.31	100.00	96.72	95.65	96.55	100.00	97.06	100.00	100.00	95.00	90.91	92.00	100.00	100.00	100.00	100.00	96.77	100.00	95.24	100.00	93.33	100.00	93.75	100.00	100.00	97.62	97.47	95.33	-2.14	0.334146	0.657607
K	intron_retention	SIRT7	chr17	-	chr17:79872579-79873315				chr17:79872578-79872579;chr17:79873315-79873316		2.94	4.50	3.80	3.57	2.38	0.00	0.00	0.00	3.57	4.35	0.00	NA	4.35	0.00	4.55	0.00	3.45	NA	2.86	3.51	0.00	2.17	2.94	7.69	3.45	4.44	6.90	6.25	7.50	4.17	5.80	6.19	2.00	6.82	6.25	3.92	3.16	3.22	0.07	0.948981	1.000000
N	cassette	AUP1	chr2	-	chr2:74755617-74756488;chr2:74755134-74756488	chr2:74755134-74756258,chr2:74755617-74756258;chr2:74756410-74756488		chr2:74756259-74756409			73.08	31.25	72.22	63.16	62.79	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	61.54	90.91	82.86	83.78	79.17	77.27	81.25	88.57	85.45	100.00	98.04	91.18	74.42	75.00	45.45	79.17	81.54	76.56	71.39	89.74	18.34	0.201923	0.709176
N	cassette	RAPGEF1	chr9	-	chr9:134477537-134497182	chr9:134477537-134494437;chr9:134494597-134497182		chr9:134494438-134494596			0.00	0.00	0.00	NA	NA	NA	0.00	2.70	0.00	3.26	1.06	1.56	0.00	3.75	1.83	1.60	1.04	3.03	NA	0.00	NA	5.00	1.64	6.45	16.67	4.88	0.00	0.00	2.70	NA	0.00	0.00	NA	4.88	2.74	4.69	0.00	1.35	1.35	0.626963	0.864183
N	alternative_acceptor	TNFRSF14	chr1	+	chr1:2489908-2491241;chr1:2489908-2491347;chr1:2489908-2491261;chr1:2489908-2490319	chr1:2489908-2490126		chr1:2490127-2490319;chr1:2490320-2491241;chr1:2491242-2491261;chr1:2491262-2491347	chr1:2490319-2490320;chr1:2491241-2491242;chr1:2491261-2491262;chr1:2491347-2491348		6.41	8.55	5.71	3.75	3.17	4.35	3.66	2.13	1.20	1.27	2.33	5.71	3.33	3.51	2.38	3.06	3.33	2.94	6.67	6.56	5.88	4.12	2.42	9.28	9.64	11.29	5.00	3.28	2.59	3.00	4.23	5.32	4.41	7.50	6.54	7.49	5.54	5.32	-0.22	0.839672	0.942953
N	cassette	PRDX5	chr11	+	chr11:64085859-64088336;chr11:64087341-64088336	chr11:64087341-64088132,chr11:64085859-64088132;chr11:64088265-64088336		chr11:64088133-64088264			95.89	94.42	95.04	96.48	94.38	94.85	95.93	94.87	99.13	96.00	96.18	93.46	95.74	95.83	93.68	94.95	95.24	98.55	94.99	90.74	95.64	95.79	94.47	94.26	94.95	92.31	92.91	92.86	93.99	96.92	88.89	91.41	90.49	88.57	88.59	92.34	94.97	93.59	-1.38	0.380103	0.709410
N	alternative_acceptor	MGAT4B	chr5	-	chr5:179225426-179225512;chr5:179225454-179225512	chr5:179225435-179225512		chr5:179225426-179225434;chr5:179225435-179225453	chr5:179225425-179225426;chr5:179225434-179225435		95.56	98.36	94.12	100.00	98.39	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	98.11	100.00	93.48	96.43	97.30	96.30	98.61	100.00	95.12	95.45	100.00	96.15	98.21	100.00	91.18	93.33	94.74	96.97	97.83	100.00	96.56	95.50	-1.06	0.543312	0.821984
K	intron_retention	PITPNM1	chr11	-	chr11:67266318-67266410				chr11:67266317-67266318;chr11:67266410-67266411		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	5.26	NA	NA	NA	NA	0.00	3.70	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	HSD17B14	chr19	-	chr19:49335990-49337532	chr19:49336010-49337532		chr19:49335990-49336009	chr19:49335989-49335990		4.35	0.00	0.00	0.00	2.68	0.00	0.00	3.57	3.70	2.00	4.69	0.00	0.00	0.00	0.00	2.94	2.00	2.50	3.19	2.70	0.00	0.00	1.84	0.00	4.44	3.77	3.03	1.54	0.00	1.22	3.41	2.38	5.19	2.78	2.20	2.27	1.59	3.49	1.90	0.498899	0.753081
K	intron_retention	RBM4	chr11	+	chr11:66407595-66413497				chr11:66407594-66407595;chr11:66413497-66413498		25.00	18.75	34.78	15.62	14.29	14.29	0.00	NA	9.09	0.00	8.33	0.00	18.18	NA	8.00	7.69	5.26	8.33	17.39	25.00	40.91	13.04	10.71	15.38	4.55	5.88	7.69	11.11	10.00	10.61	38.10	32.26	30.00	30.00	15.79	12.50	17.79	25.00	7.21	0.643937	1.000000
K	intron_retention	QSOX1	chr1	+	chr1:180165735-180166467				chr1:180165734-180165735;chr1:180166467-180166468		77.64	76.00	77.95	69.23	75.66	74.65	84.21	78.10	72.23	76.79	78.57	80.00	80.20	72.18	73.91	79.31	76.09	73.15	74.40	77.11	66.18	77.78	80.43	79.31	76.92	73.37	75.37	81.69	69.59	71.57	75.82	77.43	74.13	78.65	83.82	82.09	76.46	76.47	0.00	0.403861	1.000000
N	alternative_last_exon	CFLAR	chr2	+	chr2:202014559-202025435;chr2:202014559-202025154;chr2:202014559-202028557	chr2:202014559-202018859	chr2:202025155-202025666;chr2:202028558-202041410	chr2:202018860-202019299			3.05	5.00	2.69	4.88	2.94	5.22	2.47	1.95	2.53	1.80	1.39	1.78	1.43	1.56	2.89	3.35	2.63	2.07	8.00	2.58	4.08	2.59	3.77	3.16	NA	2.48	2.54	2.52	2.56	3.39	3.15	3.39	7.14	2.49	2.94	3.27	5.00	2.53	-2.47	0.140243	0.346075
K	intron_retention		chr19	-	chr19:47730012-47731414				chr19:47730011-47730012;chr19:47731414-47731415		23.08	14.71	12.50	NA	NA	NA	4.55	NA	5.88	NA	NA	NA	0.00	0.00	4.35	NA	NA	NA	NA	16.67	NA	NA	NA	NA	17.65	NA	0.00	NA	NA	NA	20.00	10.53	16.67	NA	NA	NA	14.71	18.34	3.62	0.843714	1.000000
K	intron_retention	CORO1A	chr16	+	chr16:30198267-30198359				chr16:30198266-30198267;chr16:30198359-30198360		2.61	4.65	6.06	0.00	9.80	0.00	0.82	0.00	0.00	0.00	1.20	0.00	1.78	1.37	1.77	0.00	0.89	0.00	6.63	3.54	5.95	0.00	6.47	0.00	13.38	2.88	6.33	NA	7.20	0.00	6.67	10.29	6.56	0.00	6.17	0.00	5.61	2.75	-2.86	0.433781	1.000000
N	alternative_acceptor	MAP7D1	chr1	+	chr1:36645669-36645848;chr1:36645669-36645851	chr1:36645669-36661271		chr1:36645849-36645851;chr1:36645852-36661271	chr1:36645851-36645852;chr1:36661271-36661272		5.56	0.00	10.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	8.70	NA	0.00	0.00	14.29	NA	0.00	0.00	12.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.208791	0.670323
K	intron_retention	CCDC9	chr19	+	chr19:47761921-47763577				chr19:47761920-47761921;chr19:47763577-47763578		2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.666207	1.000000
K	cassette	ALDH3A2	chr17	+	chr17:19568361-19578870	chr17:19568361-19575033;chr17:19575270-19578870		chr17:19575034-19575269			100.00	93.42	96.55	100.00	100.00	100.00	98.21	100.00	100.00	100.00	98.04	100.00	98.65	NA	100.00	100.00	96.51	100.00	100.00	100.00	95.83	100.00	96.05	93.33	100.00	NA	100.00	100.00	96.67	100.00	94.44	100.00	92.75	100.00	98.85	100.00	98.43	100.00	1.57	0.477664	0.771093
K	intron_retention		chr1	-	chr1:1309826-1310084				chr1:1309825-1309826;chr1:1310084-1310085		10.96	7.98	11.69	10.14	10.66	12.94	2.44	2.78	4.08	4.17	1.56	0.00	0.00	1.89	1.82	4.00	1.37	0.00	9.22	9.38	7.04	15.00	12.73	20.69	7.58	4.26	11.27	10.81	8.05	12.00	22.54	16.30	16.13	13.04	8.70	18.00	7.78	6.82	-0.96	0.993273	1.000000
N	alternative_acceptor	TLN1	chr9	-	chr9:35703879-35703987	chr9:35703898-35703987		chr9:35703879-35703897	chr9:35703878-35703879		96.70	100.00	97.65	NA	94.87	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.57	98.08	100.00	97.73	98.48	100.00	100.00	97.66	100.00	100.00	100.00	94.37	93.33	100.00	100.00	98.06	96.90	100.00	98.35	-1.65	0.085262	0.585944
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12769322-12772073;chr19:12769325-12772073;chr19:12769328-12772073;chr19:12769110-12772073;chr19:12769431-12772073	chr19:12771897-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		1.69	9.09	4.46	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.92	0.00	0.44	0.00	7.14	0.00	3.33	0.00	1.65	1.02	6.67	1.47	2.11	1.39	1.82	0.00	0.00	1.25	6.25	3.53	4.76	0.60	6.46	0.00	-6.46	0.030370	0.557523
N	jcn_only_AA	OPTN	chr10	+	chr10:13164488-13169744;chr10:13164488-13166045;chr10:13164488-13164863	chr10:13164488-13165994					100.00	NA	98.15	96.15	100.00	90.79	95.35	99.06	97.76	97.59	97.62	96.18	100.00	97.63	98.15	100.00	100.00	96.46	100.00	98.44	92.65	100.00	100.00	100.00	100.00	99.18	100.00	98.96	100.00	98.05	97.81	99.13	100.00	98.45	100.00	98.98	100.00	98.75	-1.25	0.716523	0.875250
K	intron_retention	SNRNP70	chr19	+	chr19:49610970-49611078				chr19:49610969-49610970;chr19:49611078-49611079		50.00	37.97	52.38	41.38	32.18	36.36	19.51	30.00	20.69	30.00	24.14	31.58	18.33	21.74	20.51	18.18	20.93	23.53	25.00	45.45	28.89	28.00	27.69	33.33	40.31	35.48	39.29	20.83	22.03	16.67	38.24	31.91	35.83	43.48	38.46	38.46	30.41	36.86	6.45	0.450024	1.000000
K	intron_retention	UBE2D2	chr5	+	chr5:139006643-139007136				chr5:139006642-139006643;chr5:139007136-139007137		93.94	100.00	93.10	93.22	96.43	92.59	90.48	100.00	93.02	100.00	100.00	100.00	100.00	100.00	100.00	93.02	91.67	88.24	100.00	100.00	96.23	91.23	93.10	100.00	90.77	90.70	90.74	100.00	89.74	100.00	90.62	95.56	93.75	91.03	91.30	94.67	96.88	96.97	0.09	0.966446	1.000000
K	intron_retention		chr11	+	chr11:63986831-63986995				chr11:63986830-63986831;chr11:63986995-63986996		4.97	4.81	5.00	1.04	2.63	NA	0.20	0.64	0.00	0.00	0.40	0.00	0.21	0.00	0.66	0.00	0.62	0.00	5.49	1.27	2.53	2.86	2.78	2.36	8.43	1.14	3.60	1.47	2.65	0.00	3.14	5.05	4.81	1.93	2.24	1.97	4.81	1.21	-3.60	0.436151	1.000000
N	alternative_first_exon	ACAP1	chr17	+	chr17:7253557-7254613	chr17:7254319-7254613	chr17:7253446-7253556	chr17:7254184-7254318			100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	91.67	100.00	95.65	NA	NA	NA	100.00	100.00	0.00	0.691291	0.782568
N	cassette	CD163L1	chr12	-	chr12:7519928-7521528;chr12:7510083-7521528	chr12:7510083-7520682,chr12:7519928-7520682;chr12:7520794-7521528		chr12:7520683-7520793			99.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	97.25	100.00	NA	100.00	100.00	100.00	76.04	90.29	100.00	89.23	85.99	83.54	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.612677	0.855635
K	alternative_last_exon	SH3BP1	chr22	+	chr22:38049881-38051932;chr22:38049881-38061561	chr22:38049881-38051278	chr22:38061562-38062941	chr22:38051279-38052124			96.10	93.77	95.92	88.89	92.82	100.00	82.35	96.43	88.00	90.00	94.32	NA	95.71	96.67	88.89	88.89	96.40	NA	85.55	95.95	93.94	100.00	92.93	NA	85.36	92.11	94.17	100.00	92.52	NA	92.50	88.14	89.44	83.33	93.94	100.00	87.50	96.03	8.53	0.031536	0.217248
K	intron_retention	NDUFS8	chr11	+	chr11:67798201-67799618				chr11:67798200-67798201;chr11:67799618-67799619		0.00	0.00	2.27	0.00	0.00	6.25	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	8.33	1.61	0.00	0.00	NA	3.57	NA	0.00	0.00	0.00	NA	0.00	6.90	3.17	5.00	4.35	0.00	1.02	0.00	-1.02	0.639652	1.000000
K	jcn_only_AA	ATP5A1	chr18	-	chr18:43669866-43675018	chr18:43671818-43675018					95.89	93.48	96.61	90.00	97.14	NA	98.24	96.39	97.08	95.29	97.52	97.30	97.07	96.88	98.84	96.65	96.34	96.88	100.00	96.83	100.00	100.00	97.11	95.24	NA	95.83	96.00	98.48	96.06	92.86	94.59	95.56	NA	97.79	99.11	96.60	97.66	96.14	-1.52	0.478730	0.738379
N	cassette	SUSD1	chr9	-	chr9:114814719-114840817;chr9:114820967-114840817	chr9:114814719-114825216,chr9:114820967-114825216;chr9:114825314-114840817		chr9:114825217-114825313			100.00	100.00	100.00	NA	100.00	NA	98.15	100.00	100.00	100.00	100.00	100.00	98.25	96.83	93.33	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.786983	0.936625
N	alternative_acceptor		chr2	+	chr2:232156157-232158497;chr2:232156157-232158502	chr2:232156157-232160910		chr2:232158498-232158502;chr2:232158503-232160910	chr2:232158502-232158503;chr2:232160910-232160911		83.33	94.59	86.67	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.30	NA	100.00	100.00	92.86	93.75	97.37	NA	100.00	100.00	98.08	100.00	87.50	90.91	93.33	85.71	86.36	86.67	96.84	93.75	-3.09	0.403771	0.719111
K	alternative_acceptor	RNASE1	chr14	-	chr14:21270479-21270955	chr14:21270491-21270955		chr14:21270479-21270490	chr14:21270478-21270479		21.90	17.36	29.73	20.75	21.86	20.21	27.23	28.10	26.32	26.28	26.67	27.08	29.48	26.52	34.48	28.60	26.28	29.11	25.00	26.09	26.19	22.32	25.00	24.09	15.09	29.07	22.64	26.36	25.57	24.22	27.00	20.45	21.32	26.50	23.24	23.64	23.16	26.76	3.60	0.169954	0.660713
K	intron_retention		chr10	+	chr10:104416143-104416503				chr10:104416142-104416143;chr10:104416503-104416504		0.00	0.00	3.37	NA	0.00	NA	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	6.67	NA	NA	0.00	1.45	0.00	2.56	NA	6.67	5.45	9.09	0.00	6.06	0.00	0.57	0.00	-0.57	0.802238	1.000000
K	intron_retention		chr1	-	chr1:27995047-27995755				chr1:27995046-27995047;chr1:27995755-27995756		2.55	1.95	1.71	3.00	1.28	2.56	1.82	1.91	1.92	3.10	2.09	2.77	1.55	2.10	2.07	2.59	1.71	3.16	0.87	1.17	0.99	4.15	1.18	4.13	0.00	2.11	2.12	4.76	0.00	2.58	0.86	0.87	0.77	7.33	1.99	3.66	1.21	2.00	0.79	0.395574	1.000000
K	intron_retention	ALDH3A2	chr17	+	chr17:19578813-19578874				chr17:19578812-19578813;chr17:19578874-19578875		0.00	6.25	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	3.77	NA	0.00	0.00	3.39	NA	12.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	1.79	0.00	5.26	0.00	-5.26	0.181933	1.000000
N	cassette	GPR137B	chr1	+	chr1:236343329-236368425	chr1:236343329-236347077;chr1:236347207-236368425		chr1:236347078-236347206			100.00	100.00	96.12	91.43	93.75	100.00	100.00	99.30	100.00	98.95	98.01	98.66	99.15	99.10	98.05	97.82	98.12	98.46	100.00	100.00	100.00	97.14	96.97	97.04	NA	98.91	99.10	98.78	98.88	96.00	100.00	98.70	90.91	98.17	100.00	97.52	100.00	99.65	-0.35	0.438210	0.743123
K	intron_retention	MEF2D	chr1	-	chr1:156438092-156438571				chr1:156438091-156438092;chr1:156438571-156438572		11.76	0.00	10.42	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	3.70	0.00	NA	5.88	NA	NA	2.44	0.00	0.00	0.00	NA	12.90	8.89	0.00	0.00	8.00	6.67	0.00	3.07	3.07	0.250108	1.000000
N	cassette	APH1A	chr1	-	chr1:150239879-150241097;chr1:150240190-150241097	chr1:150239879-150240356,chr1:150240190-150240356;chr1:150240528-150241097		chr1:150240357-150240527			96.81	96.61	90.98	75.00	89.19	NA	99.17	100.00	97.86	96.58	96.39	98.50	98.40	98.34	97.35	96.02	97.33	96.88	100.00	95.60	94.74	88.89	87.61	86.81	100.00	98.08	93.90	91.67	93.83	95.08	98.08	92.86	100.00	93.20	92.13	90.91	99.59	98.08	-1.51	0.170879	0.709176
N	jcn_only_AA	MAP3K11	chr11	-	chr11:65375288-65375392;chr11:65375169-65375392;chr11:65375165-65375392	chr11:65375235-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	1.37	2.41	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.80	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	CCNH	chr5	-	chr5:86690298-86690860;chr5:86688722-86690860	chr5:86690302-86690860		chr5:86688722-86690297;chr5:86690298-86690301	chr5:86688721-86688722;chr5:86690297-86690298		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	95.00	96.00	92.86	100.00	100.00	93.10	100.00	94.12	90.91	98.28	100.00	98.59	100.00	100.00	NA	100.00	88.46	100.00	93.33	97.78	100.00	100.00	95.83	98.61	98.00	98.00	100.00	100.00	100.00	0.00	0.502079	0.756128
K	intron_retention	TRIM28	chr19	+	chr19:59059960-59060106				chr19:59059959-59059960;chr19:59060106-59060107		3.28	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.20	4.59	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.407195	1.000000
N	alternative_acceptor	ASCC2	chr22	-	chr22:30198128-30200626;chr22:30198123-30200626;chr22:30198231-30200626	chr22:30198198-30200626		chr22:30198123-30198127;chr22:30198128-30198197;chr22:30198198-30198230	chr22:30198122-30198123;chr22:30198127-30198128;chr22:30198197-30198198		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.10	100.00	100.00	90.48	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.493843	0.791230
N	alternative_acceptor	AP1B1	chr22	-	chr22:29782977-29784412;chr22:29765379-29784412;chr22:29763260-29784412	chr22:29763257-29784412		chr22:29763257-29763259;chr22:29763260-29765378;chr22:29765379-29782976	chr22:29763256-29763257;chr22:29763259-29763260;chr22:29765378-29765379		0.00	5.88	3.33	NA	NA	NA	2.04	3.23	4.88	1.61	2.33	1.37	2.22	1.92	3.85	3.08	1.01	2.78	NA	4.35	NA	14.29	4.23	9.09	0.00	4.17	0.00	NA	2.50	NA	NA	5.88	NA	7.69	1.59	2.56	2.13	3.23	1.10	0.896935	0.963205
N	alternative_acceptor	B4GALT3	chr1	-	chr1:161141855-161142016	chr1:161141880-161142016		chr1:161141855-161141879	chr1:161141854-161141855		95.00	83.33	82.35	NA	76.47	NA	100.00	NA	100.00	86.67	100.00	NA	100.00	NA	90.48	100.00	100.00	NA	NA	93.33	100.00	100.00	90.00	NA	NA	85.71	87.50	NA	87.50	NA	87.50	83.78	93.33	82.35	100.00	92.86	96.66	90.41	-6.25	0.443995	0.751583
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094497-4095385;chr19:4095045-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4094656-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		4.67	24.21	7.63	3.45	6.75	8.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.10	15.00	5.59	8.57	5.04	8.33	8.25	11.11	8.18	4.88	4.29	4.41	9.35	26.32	19.48	3.92	5.19	14.85	13.87	7.01	-6.86	0.322198	0.709013
K	jcn_only_AA	NADSYN1	chr11	+	chr11:71192451-71193046	chr11:71192451-71192968		chr11:71192969-71193046	chr11:71193046-71193047		100.00	100.00	96.97	NA	100.00	NA	100.00	100.00	100.00	100.00	94.74	NA	95.65	100.00	100.00	100.00	92.31	NA	86.67	92.31	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.00	NA	100.00	100.00	90.00	97.83	100.00	2.17	0.452174	0.715134
K	alternative_donor	DPH1,OVCA2	chr17	+	chr17:1945170-1945898	chr17:1945526-1945898		chr17:1945170-1945525	chr17:1945169-1945170		100.00	35.00	83.33	72.73	80.95	84.62	53.12	94.74	70.97	80.00	75.00	NA	72.73	87.50	64.00	76.92	74.07	NA	NA	100.00	77.78	78.57	76.47	100.00	41.67	100.00	85.71	69.23	65.00	86.67	80.00	100.00	33.33	85.71	83.33	87.50	41.67	97.37	55.70	0.001367	0.093044
N	alternative_donor	GLG1,KCTD13	chr16	-	chr16:74486030-74487068	chr16:74486030-74486128		chr16:74486129-74487068	chr16:74487068-74487069		93.43	85.14	89.82	65.91	76.71	32.99	90.16	90.00	89.09	86.49	94.68	68.42	90.51	91.86	90.38	86.67	93.81	85.71	79.27	90.00	81.33	77.42	88.24	73.33	78.03	86.54	89.19	73.91	82.05	55.07	89.62	89.09	75.00	79.73	80.51	68.75	82.20	90.00	7.80	0.042389	0.375646
N	jcn_only_AA	WDFY4	chr10	+	chr10:50189524-50190553;chr10:50189524-50190764	chr10:50189524-50190734		chr10:50190554-50190734;chr10:50190735-50190764	chr10:50190734-50190735;chr10:50190764-50190765		0.00	8.65	0.00	8.11	0.00	0.00	4.48	6.25	6.45	0.00	6.00	8.70	0.00	3.57	3.70	0.00	5.26	9.52	6.98	2.86	10.84	3.03	10.42	0.00	4.48	4.35	7.14	8.11	8.77	0.00	11.54	9.80	11.36	0.00	3.92	0.00	5.73	3.96	-1.77	0.598368	0.813353
N	alternative_donor		chr7	-	chr7:26230749-26231920;chr7:26230749-26231041;chr7:26230749-26231218	chr7:26230749-26232114		chr7:26231042-26231218;chr7:26231219-26231920;chr7:26231921-26232114	chr7:26231218-26231219;chr7:26231920-26231921;chr7:26232114-26232115		44.90	36.03	40.91	33.48	31.12	27.25	10.20	27.07	27.13	10.16	6.77	8.37	8.54	29.76	19.11	14.52	5.91	6.47	31.83	51.82	36.16	41.44	38.05	35.52	17.56	50.73	33.82	23.14	18.97	26.07	72.15	60.00	41.82	29.71	26.38	41.12	24.70	47.81	23.12	0.034644	0.349791
K	intron_retention	PYGL	chr14	-	chr14:51387786-51390686				chr14:51387785-51387786;chr14:51390686-51390687		10.61	0.00	8.42	NA	5.26	NA	2.20	NA	0.00	2.04	1.06	2.90	5.10	11.54	0.00	5.77	2.26	2.41	NA	5.88	NA	0.00	3.03	2.08	NA	9.09	7.04	5.88	5.33	0.00	NA	7.69	7.69	0.00	3.30	1.28	3.65	9.85	6.20	0.315617	1.000000
K	jcn_only_AD	BDH2,RCHY1	chr4	-	chr4:104006620-104007636	chr4:104006620-104006855		chr4:104006856-104007636	chr4:104007636-104007637		0.00	0.00	1.52	NA	0.00	NA	0.00	0.00	0.00	0.00	10.53	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	NA	0.00	0.00	1.79	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	CC2D1B	chr1	-	chr1:52826222-52826645				chr1:52826221-52826222;chr1:52826645-52826646		2.63	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	NA	6.06	NA	0.00	3.70	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	NA	0.00	2.78	0.00	0.00	0.00	0.00	0.486032	1.000000
K	jcn_only_AA	CHID1	chr11	-	chr11:882516-883147;chr11:870500-883147;chr11:874911-883147	chr11:870490-883147		chr11:870490-870499;chr11:870500-874910;chr11:874911-882515	chr11:870489-870490;chr11:870499-870500;chr11:874910-874911		11.11	4.50	12.50	11.11	7.92	9.43	8.60	16.67	5.00	7.41	1.75	2.70	6.67	10.00	0.00	9.43	6.00	4.35	3.73	8.33	4.08	9.52	5.17	9.52	7.52	NA	10.00	5.26	9.26	10.53	5.26	5.88	3.97	10.00	9.09	4.55	5.58	10.00	4.42	0.077579	0.663989
K	intron_retention	FUS	chr16	+	chr16:31198158-31199645				chr16:31198157-31198158;chr16:31199645-31199646		13.74	24.49	27.12	3.20	3.68	1.47	2.86	1.64	1.01	0.64	1.45	0.00	1.54	1.99	4.96	1.06	1.80	1.02	6.52	11.26	1.37	4.29	6.53	7.81	0.00	13.25	15.11	2.56	1.70	2.24	15.31	35.78	13.89	17.01	18.06	12.56	4.69	12.25	7.56	0.909392	1.000000
K	jcn_only_AA	AKT1	chr14	-	chr14:105235964-105237081	chr14:105236758-105237081		chr14:105235964-105236757	chr14:105235963-105235964		92.47	90.62	93.18	69.23	73.47	26.67	94.96	94.17	95.56	94.79	94.85	91.14	100.00	94.06	100.00	95.19	95.52	95.16	60.00	95.45	68.00	92.00	93.69	96.23	100.00	96.70	94.57	89.09	91.15	84.29	90.38	88.89	64.29	90.00	93.59	92.86	92.79	94.12	1.33	0.283916	0.663989
N	jcn_only_AD	GAA	chr17	+	chr17:78075690-78078353;chr17:78075679-78078353	chr17:78075725-78078353		chr17:78075679-78075689;chr17:78075690-78075724	chr17:78075678-78075679;chr17:78075689-78075690		12.12	0.00	5.41	NA	18.18	NA	5.43	4.88	6.98	2.99	4.17	5.17	7.20	2.17	8.00	6.12	5.26	6.82	NA	8.82	NA	7.14	4.05	7.55	0.00	6.38	10.26	2.78	8.11	0.00	7.14	3.70	0.00	3.57	0.00	6.56	0.00	6.76	6.76	0.067348	0.590809
N	alternative_donor	CYTH2	chr19	+	chr19:48978207-48981325	chr19:48980977-48981325		chr19:48978207-48980976	chr19:48978206-48978207		29.41	29.73	29.63	10.00	16.00	14.29	3.85	2.13	4.00	0.00	4.76	0.00	6.90	2.63	7.69	5.00	3.23	2.56	12.50	21.95	14.81	16.00	20.59	21.74	25.00	14.58	16.33	8.70	11.54	6.25	25.00	28.57	17.39	27.59	23.33	21.95	14.95	18.27	3.32	0.993188	0.997782
N	coord_cassette	STAC3	chr12	-	chr12:57638749-57642488	chr12:57638749-57638927;chr12:57638995-57640586;chr12:57640685-57642488		chr12:57638928-57638994;chr12:57640587-57640684			100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	95.83	100.00	100.00	NA	100.00	NA	89.47	100.00	NA	NA	94.74	90.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	100.00	0.00	0.221217	0.643829
N	cassette	NDUFV3	chr21	+	chr21:44313492-44323291;chr21:44313492-44328973	chr21:44313492-44317036;chr21:44317158-44323291,chr21:44317158-44328973		chr21:44317037-44317157			84.62	96.36	100.00	91.30	91.67	89.19	95.24	100.00	93.10	91.18	89.66	85.29	91.04	100.00	100.00	98.46	95.74	91.18	100.00	100.00	95.65	88.46	87.80	90.91	100.00	NA	100.00	83.33	96.15	93.33	NA	90.91	86.84	96.15	95.24	100.00	95.80	100.00	4.20	0.788942	0.936947
N	alternative_donor	PLEK	chr2	+	chr2:68621942-68622811;chr2:68621919-68622811	chr2:68621309-68622811		chr2:68621309-68621918;chr2:68621919-68621941	chr2:68621308-68621309;chr2:68621918-68621919		99.09	100.00	98.69	100.00	100.00	100.00	99.89	99.75	100.00	100.00	100.00	100.00	99.57	100.00	100.00	99.85	100.00	100.00	100.00	99.31	100.00	99.25	99.53	99.73	90.48	99.31	99.18	99.54	99.61	100.00	99.21	98.65	100.00	99.11	99.19	99.72	99.94	99.31	-0.63	0.508137	0.761403
N	alternative_acceptor	TIMM10	chr11	-	chr11:57298012-57298130;chr11:57297767-57298130	chr11:57297708-57298130		chr11:57297708-57297766;chr11:57297767-57298011	chr11:57297707-57297708;chr11:57297766-57297767		81.82	100.00	100.00	100.00	100.00	92.00	96.92	NA	NA	94.92	97.70	100.00	100.00	NA	80.00	96.25	94.12	97.14	100.00	52.63	87.88	93.94	97.73	86.36	92.59	38.89	95.24	96.88	100.00	91.18	52.94	80.00	100.00	100.00	100.00	91.30	100.00	52.78	-47.22	0.018105	0.508745
N	jcn_only_AA	BET1L	chr11	-	chr11:201777-205610;chr11:201742-205610;chr11:205470-205610	chr11:201226-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		18.18	50.00	6.67	28.57	30.00	18.52	2.78	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	33.33	0.00	16.00	0.00	26.32	0.00	0.00	13.64	10.71	0.00	0.00	6.25	23.08	0.00	56.00	18.75	8.00	0.00	18.05	8.48	-9.57	0.262258	0.663989
N	alternative_donor	CTSD	chr11	-	chr11:1782699-1783362;chr11:1782699-1792620	chr11:1782699-1785021		chr11:1783363-1785021;chr11:1785022-1792620	chr11:1785021-1785022;chr11:1792620-1792621		95.92	98.31	96.77	NA	100.00	NA	99.22	98.36	98.81	99.39	97.94	100.00	98.98	97.65	97.14	99.12	99.11	100.00	94.44	95.35	100.00	100.00	97.12	100.00	95.12	95.45	96.77	100.00	97.26	100.00	98.28	97.50	95.45	98.51	97.59	100.00	96.88	96.78	-0.09	0.937300	0.984606
N	alternative_donor	CYB5A	chr18	-	chr18:71928180-71930583	chr18:71928180-71929105		chr18:71929106-71930583	chr18:71930583-71930584		0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	3.12	0.00	1.82	1.82	2.82	NA	0.00	2.56	0.00	0.00	0.00	0.00	0.88	0.00	2.04	2.56	2.56	0.00	0.00	0.00	0.363217	0.650093
K	jcn_only_AA	ATP6V0D1	chr16	-	chr16:67472999-67473176	chr16:67473051-67473176		chr16:67472999-67473050	chr16:67472998-67472999		95.83	94.51	97.04	96.08	94.71	95.12	96.82	97.50	95.42	98.58	98.36	97.83	97.07	96.77	95.59	96.90	97.71	97.82	87.13	92.53	93.33	93.08	95.24	93.53	97.73	96.15	95.90	96.35	95.08	96.58	90.55	94.44	91.89	96.44	94.98	95.27	95.66	95.99	0.33	0.736050	0.881677
K	cassette	WBP1	chr2	+	chr2:74685799-74686769	chr2:74685799-74686564;chr2:74686680-74686769		chr2:74686565-74686679			7.14	0.00	0.00	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	10.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.588496	0.844083
N	jcn_only_AD	MAGED2	chrX	+	chrX:54841209-54842313;chrX:54842124-54842313	chrX:54842112-54842313					4.88	0.00	3.39	0.00	5.17	0.00	0.00	4.08	0.00	2.70	2.78	0.00	0.00	3.53	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	6.25	0.00	1.85	2.56	0.00	0.00	4.65	3.28	1.39	0.00	0.00	0.00	0.00	0.00	3.40	3.40	0.020342	0.339989
K	alternative_acceptor	CANX	chr5	+	chr5:179153761-179156360	chr5:179153761-179155591		chr5:179155592-179156360	chr5:179156360-179156361		97.01	100.00	100.00	100.00	100.00	100.00	98.59	100.00	100.00	94.79	95.01	94.09	98.04	98.97	98.39	97.91	94.09	94.09	100.00	96.32	96.81	98.11	100.00	97.95	100.00	100.00	100.00	97.93	97.50	100.00	94.87	95.24	98.54	100.00	98.51	98.19	99.30	97.99	-1.30	0.200418	0.668038
N	alternative_donor	CBX1,PER1	chr17	-	chr17:8045274-8045586	chr17:8045274-8045581		chr17:8045582-8045586	chr17:8045586-8045587		2.86	0.00	2.86	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	4.17	0.00	NA	0.00	NA	0.00	0.00	2.78	NA	NA	NA	3.70	10.14	0.00	8.33	0.00	0.00	0.00	1.43	1.43	0.080456	0.470724
K	cassette	SPP1	chr4	+	chr4:88898250-88902626;chr4:88901279-88902626	chr4:88901279-88901544,chr4:88898250-88901544;chr4:88901587-88902626		chr4:88901545-88901586			74.00	70.29	72.33	72.93	70.30	66.07	68.08	70.27	70.03	70.17	69.64	70.05	67.70	68.26	65.57	66.72	67.50	64.53	71.05	72.88	68.81	71.14	67.70	69.55	66.91	72.70	67.86	68.69	67.30	66.71	71.80	70.05	66.21	71.59	69.62	69.14	67.89	72.25	4.36	0.017431	0.373030
N	jcn_only_AA	ZNF592	chr15	+	chr15:85343209-85345093	chr15:85343209-85344799		chr15:85344800-85345093	chr15:85345093-85345094		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	7.14	0.00	0.00	11.11	12.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.85	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_first_exon	CFLAR	chr2	+	chr2:201995704-201997751,chr2:201997301-201997751,chr2:201994731-201997751,chr2:201997645-201997751,chr2:201997549-201997751,chr2:201996942-201997751,chr2:201997597-201997751;chr2:201983625-201997751;chr2:201994870-201997751;chr2:201981205-201997751	chr2:201997574-201997751	chr2:201983214-201983624;chr2:201994226-201994869;chr2:201980827-201981204	chr2:201997502-201997573			3.73	0.00	1.05	4.44	0.00	5.80	0.00	2.99	2.02	0.71	0.00	1.46	0.00	2.25	1.49	1.20	1.41	0.83	0.00	4.21	6.25	2.10	2.63	1.63	0.00	2.76	2.02	2.73	0.00	2.34	5.59	5.68	0.00	2.76	0.00	2.00	0.00	3.36	3.36	0.000755	0.015511
K	intron_retention		chr22	-	chr22:50966147-50967564				chr22:50966146-50966147;chr22:50967564-50967565		77.58	69.57	88.48	90.48	78.57	89.71	NA	79.31	72.22	NA	NA	NA	45.45	53.85	73.42	70.00	71.43	75.00	56.76	77.30	60.00	91.94	89.53	95.10	82.05	71.78	76.30	81.16	75.61	85.19	70.37	82.02	62.16	93.27	81.25	89.18	62.16	74.54	12.38	0.384524	1.000000
K	alternative_donor	CLASRP	chr19	+	chr19:45561141-45562525	chr19:45561157-45562525		chr19:45561141-45561156	chr19:45561140-45561141		75.00	59.09	84.00	NA	83.33	NA	NA	72.73	84.62	NA	NA	NA	80.00	NA	70.59	86.67	100.00	NA	70.00	59.09	75.00	NA	76.47	83.33	73.53	100.00	82.61	73.33	76.92	83.33	62.50	67.50	69.23	88.24	73.91	67.86	70.00	72.73	2.73	0.676505	0.858972
K	intron_retention	KMT2B	chr19	+	chr19:36227888-36227986				chr19:36227887-36227888;chr19:36227986-36227987		4.44	8.00	6.06	0.00	11.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	2.50	0.00	0.00	0.00	3.03	0.00	0.00	2.38	0.00	0.00	0.00	4.26	0.00	0.00	0.00	4.35	7.41	11.76	0.00	0.00	0.00	0.00	1.51	1.51	0.969984	1.000000
K	jcn_only_AD	ROMO1	chr20	+	chr20:34287417-34287554;chr20:34287374-34287554	chr20:34287379-34287554		chr20:34287374-34287378;chr20:34287379-34287416	chr20:34287373-34287374;chr20:34287378-34287379		61.11	69.13	65.91	64.18	66.96	72.40	70.65	68.25	69.81	72.37	68.97	62.82	72.58	70.83	62.90	69.11	74.34	75.00	67.20	66.07	68.67	62.50	62.50	77.08	64.42	66.67	69.05	68.89	68.92	72.84	58.97	62.32	69.13	70.27	75.44	72.13	69.13	66.37	-2.76	0.137220	0.657607
N	alternative_donor	CLASRP	chr19	+	chr19:45571313-45571677;chr19:45571317-45571677	chr19:45571379-45571677		chr19:45571313-45571316;chr19:45571317-45571378	chr19:45571312-45571313;chr19:45571316-45571317		2.94	1.94	3.12	3.57	4.26	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	5.26	0.00	0.00	NA	1.49	3.70	2.38	0.00	0.00	5.56	1.04	5.26	3.23	7.69	6.25	5.56	3.23	3.17	1.11	3.85	4.17	2.94	1.11	3.23	2.12	0.089843	0.479204
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67816762-67817129	chr11:67816762-67817084		chr11:67817085-67817129	chr11:67817129-67817130		16.46	12.29	15.12	23.53	22.91	15.96	1.83	3.59	3.12	2.47	2.97	0.63	4.02	5.64	9.09	4.84	3.98	0.00	13.56	18.75	13.87	21.82	20.97	13.33	11.44	17.34	16.58	17.39	21.59	18.03	15.38	18.72	11.05	20.00	20.45	15.38	11.25	15.92	4.68	0.277416	0.709013
N	cassette	PDCD6	chr5	+	chr5:304337-314531;chr5:306876-314531;chr5:272888-314531	chr5:306876-311407,chr5:272888-311407,chr5:304337-311407;chr5:311518-314531		chr5:311408-311517			100.00	100.00	97.14	100.00	96.88	100.00	97.85	100.00	94.92	100.00	98.68	94.74	96.55	94.87	95.16	90.48	96.25	100.00	97.56	100.00	98.21	97.22	96.39	100.00	100.00	97.14	100.00	98.00	97.67	100.00	97.62	98.48	97.78	100.00	100.00	100.00	97.81	98.81	1.00	0.986259	0.996694
K	intron_retention		chr19	+	chr19:50386150-50386229				chr19:50386149-50386150;chr19:50386229-50386230		72.73	0.00	50.00	NA	23.08	NA	0.00	NA	7.69	NA	0.00	NA	0.00	NA	44.44	9.09	0.00	NA	5.00	58.82	7.14	NA	37.04	50.00	0.00	76.47	21.74	18.18	8.33	NA	27.27	16.67	0.00	20.00	40.00	43.48	0.00	65.78	65.78	0.031616	1.000000
K	intron_retention	FXR1	chr3	+	chr3:180688147-180693909				chr3:180688146-180688147;chr3:180693909-180693910		0.00	1.23	6.90	0.00	0.00	0.00	2.56	2.78	3.64	0.00	6.67	0.00	3.03	0.00	3.28	2.56	2.08	2.86	2.04	4.44	1.89	0.00	0.00	2.50	0.00	0.00	1.79	3.12	0.00	0.00	2.27	2.41	0.00	0.00	0.00	2.50	1.64	1.14	-0.50	0.979245	1.000000
N	alternative_donor	ANPEP	chr15	-	chr15:90344839-90346413;chr15:90344839-90345637;chr15:90344839-90344991	chr15:90344839-90346469		chr15:90344992-90345637;chr15:90345638-90346413;chr15:90346414-90346469	chr15:90345637-90345638;chr15:90346413-90346414;chr15:90346469-90346470		99.46	100.00	98.12	97.35	98.45	87.50	100.00	99.51	99.74	98.79	99.24	98.69	99.32	99.46	98.86	97.25	97.67	96.14	100.00	99.23	98.94	97.19	98.08	95.73	100.00	98.90	98.16	96.83	96.98	96.51	99.67	99.29	100.00	95.46	97.23	94.89	100.00	99.46	-0.54	0.008674	0.211749
K	jcn_only_AD	PARP10	chr8	-	chr8:145057980-145058202	chr8:145057980-145058175		chr8:145058176-145058202	chr8:145058202-145058203		89.20	100.00	87.40	90.48	94.74	88.64	95.56	90.43	91.33	100.00	93.10	91.07	90.70	91.44	86.92	90.48	92.31	90.38	100.00	86.44	86.59	83.33	90.00	92.31	100.00	89.08	88.68	94.59	100.00	94.12	82.47	80.31	100.00	84.62	100.00	86.49	100.00	89.14	-10.86	0.001028	0.088595
N	jcn_only_AA	MRPL20	chr1	-	chr1:1337982-1341188;chr1:1337806-1341188;chr1:1337631-1341188	chr1:1337637-1341188		chr1:1337631-1337636;chr1:1337637-1337805;chr1:1337806-1337981	chr1:1337630-1337631;chr1:1337636-1337637;chr1:1337805-1337806		96.34	100.00	95.12	96.27	97.83	97.46	100.00	98.04	89.86	97.70	97.54	100.00	96.55	95.83	93.67	96.69	98.69	100.00	98.84	97.33	97.62	94.81	95.03	94.55	100.00	94.44	98.20	96.47	97.24	92.62	92.22	96.24	97.09	94.50	96.32	96.33	99.42	96.09	-3.33	0.018961	0.537091
K	intron_retention		chr20	-	chr20:3669267-3669801				chr20:3669266-3669267;chr20:3669801-3669802		25.96	26.09	35.00	NA	22.22	18.87	5.12	5.17	7.82	3.00	5.53	3.53	4.70	5.45	8.75	8.45	4.86	4.00	14.29	18.50	9.62	30.00	32.69	22.38	28.57	18.28	24.79	24.14	16.82	12.25	18.00	17.89	11.11	30.43	27.03	21.54	12.70	18.14	5.44	0.491008	1.000000
N	cassette	SCFD1	chr14	+	chr14:31177272-31203995	chr14:31177272-31185129;chr14:31185184-31203995		chr14:31185130-31185183			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr12	+	chr12:123466427-123466503				chr12:123466426-123466427;chr12:123466503-123466504		5.71	0.90	5.88	1.17	1.78	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.46	0.00	2.26	5.88	2.70	4.17	2.03	4.55	0.61	0.00	3.06	1.71	1.85	1.34	12.96	10.23	3.28	3.09	3.23	3.73	0.76	2.85	2.10	0.423952	1.000000
K	intron_retention	PFKL	chr21	+	chr21:45739299-45739966				chr21:45739298-45739299;chr21:45739966-45739967		4.35	7.04	10.91	0.00	2.70	NA	0.81	0.00	2.99	1.12	1.35	0.00	1.35	1.23	2.99	1.79	2.11	0.00	6.25	3.85	1.85	6.06	7.04	5.88	15.62	4.76	7.02	3.03	2.86	5.88	2.38	8.82	3.33	6.15	6.10	5.81	4.79	3.12	-1.67	0.803882	1.000000
N	alternative_donor	SIGLEC9	chr19	+	chr19:51630164-51630286;chr19:51630151-51630286	chr19:51629386-51630286		chr19:51629386-51630150;chr19:51630151-51630163	chr19:51629385-51629386;chr19:51630150-51630151		98.21	100.00	93.44	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.98	97.37	99.07	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	94.59	97.14	94.12	100.00	92.31	96.15	96.72	98.11	100.00	100.00	100.00	100.00	96.97	96.59	100.00	100.00	100.00	0.00	0.310021	0.650093
N	jcn_only_AA		chr7	+	chr7:23313234-23316646;chr7:23313234-23313672;chr7:23313234-23314803;chr7:23313234-23314549;chr7:23313234-23313693	chr7:23313234-23313683		chr7:23313673-23313683;chr7:23313684-23313693;chr7:23313694-23314549;chr7:23314550-23314803;chr7:23314804-23316646	chr7:23313683-23313684;chr7:23313693-23313694;chr7:23314549-23314550;chr7:23314803-23314804;chr7:23316646-23316647		97.32	97.55	96.30	93.65	96.95	95.18	97.04	96.25	97.16	97.58	96.94	97.35	97.03	97.11	96.65	96.88	97.33	97.54	95.80	97.65	97.10	97.27	96.84	97.74	100.00	96.65	96.20	97.42	97.19	97.48	97.12	98.11	96.14	96.94	96.73	96.71	97.03	97.12	0.08	0.716957	0.875250
N	alternative_donor	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610821-242611605;chr2:242610841-242611605	chr2:242610967-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		11.32	5.04	10.17	6.52	4.81	3.77	2.56	5.88	3.70	4.55	0.00	0.00	0.00	0.00	8.00	0.00	3.45	NA	1.87	16.00	6.33	7.89	6.25	12.50	2.91	20.83	11.94	13.33	6.78	14.81	8.06	10.94	3.48	16.67	11.67	21.31	2.74	9.69	6.96	0.051218	0.397730
K	jcn_only_AD	SSNA1	chr9	+	chr9:140083604-140084258	chr9:140083718-140084258		chr9:140083604-140083717	chr9:140083603-140083604		96.47	97.80	97.44	96.43	95.97	97.33	99.19	98.46	98.00	97.40	95.90	97.37	96.27	97.01	97.37	96.15	96.21	100.00	97.06	98.48	96.43	94.00	95.93	97.14	100.00	97.96	96.39	98.53	94.50	95.08	95.59	96.36	94.19	95.31	97.27	97.30	97.43	97.48	0.05	0.928967	0.961114
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67810965-67811020;chr11:67810965-67811037	chr11:67810965-67811088		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		0.00	0.00	0.90	0.00	0.00	NA	2.67	0.00	0.00	0.00	1.49	0.00	2.96	1.93	0.00	1.85	1.81	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	1.59	0.00	6.90	1.30	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.577896	0.802213
K	intron_retention		chr20	+	chr20:2844934-2845010				chr20:2844933-2844934;chr20:2845010-2845011		12.20	11.63	12.77	NA	7.69	9.09	0.00	0.00	0.00	0.00	16.67	NA	0.00	0.00	6.12	0.00	0.00	NA	11.76	25.00	10.00	20.00	13.33	18.75	0.00	7.89	12.24	NA	17.14	10.53	26.09	17.07	8.00	15.00	14.63	15.38	4.00	10.04	6.04	0.433260	1.000000
K	intron_retention		chr8	-	chr8:21767443-21768183				chr8:21767442-21767443;chr8:21768183-21768184		2.17	0.00	0.00	NA	2.52	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	1.67	0.00	0.00	NA	2.88	NA	1.45	0.00	5.13	NA	1.86	NA	NA	8.33	2.94	0.00	2.04	NA	0.72	0.00	-0.72	0.787845	1.000000
K	intron_retention	ABTB1	chr3	+	chr3:127399029-127399111				chr3:127399028-127399029;chr3:127399111-127399112		4.84	1.88	1.82	5.00	2.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.86	4.88	5.41	0.00	3.03	0.00	5.78	4.00	2.44	2.86	3.95	0.00	6.86	5.48	5.81	3.33	2.13	0.00	2.37	4.42	2.05	0.883733	1.000000
K	jcn_only_AD	EIF4E2	chr2	+	chr2:233415455-233421125	chr2:233415929-233421125		chr2:233415455-233415928	chr2:233415454-233415455		19.15	0.00	4.41	0.00	8.70	0.00	6.67	6.52	1.05	1.74	4.81	1.56	5.88	4.63	3.30	3.96	5.82	2.59	7.89	7.14	0.00	0.00	3.06	0.00	0.00	7.46	7.94	2.56	5.93	1.22	9.30	3.64	0.00	5.26	4.84	4.17	2.94	7.30	4.36	0.059732	0.547879
N	jcn_only_AA	TPST2	chr22	-	chr22:26922234-26924179	chr22:26923654-26924179		chr22:26922234-26923653	chr22:26922233-26922234		5.00	0.00	0.00	1.89	2.67	0.00	0.00	2.86	0.00	0.00	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	1.43	0.00	0.00	0.00	0.00	0.89	0.00	1.82	0.00	0.00	0.00	0.193917	0.663989
N	jcn_only_AA	HECTD3	chr1	-	chr1:45469609-45469731	chr1:45469633-45469731		chr1:45469609-45469632	chr1:45469608-45469609		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	5.71	0.00	0.00	NA	0.00	0.00	0.00	4.26	0.00	0.00	0.00	3.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	ATXN2L	chr16	+	chr16:28846721-28846866;chr16:28846721-28846875;chr16:28846721-28846869	chr16:28846721-28846933		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		0.00	0.00	0.00	0.00	3.51	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	3.39	0.00	2.56	0.00	2.86	0.00	0.00	1.87	0.00	0.00	0.00	1.92	2.88	15.79	6.25	3.64	4.76	0.00	0.00	0.00	0.543305	0.779641
K	intron_retention	GPAA1	chr8	+	chr8:145140042-145140191				chr8:145140041-145140042;chr8:145140191-145140192		17.02	8.51	18.52	21.05	14.29	29.03	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	4.26	2.17	0.00	0.00	15.52	14.71	16.00	25.00	18.75	27.27	17.11	13.64	13.51	11.11	3.92	20.83	26.32	28.89	12.50	21.21	12.50	19.57	10.50	14.18	3.67	0.885081	1.000000
K	alternative_first_exon	TMEM18	chr2	-	chr2:675631-676112;chr2:675631-677288;chr2:675631-675757	chr2:675631-676573	chr2:677289-677439;chr2:675758-676238	chr2:676574-676704			0.00	0.00	0.00	0.00	0.00	NA	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.548525
K	intron_retention	LRCH4	chr7	-	chr7:100171980-100173327				chr7:100171979-100171980;chr7:100173327-100173328		46.99	26.54	45.00	28.95	17.92	17.35	7.14	29.63	7.89	7.69	3.45	0.00	17.02	18.18	17.65	12.50	7.69	NA	16.01	40.00	16.89	27.78	32.76	21.43	19.13	34.29	38.32	29.41	19.23	11.54	29.27	30.71	13.85	36.36	29.17	29.63	16.52	31.96	15.45	0.102648	1.000000
K	intron_retention	TRAPPC3	chr1	-	chr1:36602924-36603396				chr1:36602923-36602924;chr1:36603396-36603397		8.59	15.20	10.87	8.87	7.07	9.32	1.30	0.00	0.00	1.37	0.00	0.00	1.20	0.00	0.00	2.63	0.00	0.00	10.80	7.69	6.67	6.41	9.17	19.35	9.09	8.26	9.92	4.00	5.65	5.17	12.31	12.42	6.70	13.41	12.17	15.24	7.89	7.97	0.08	0.667237	1.000000
K	intron_retention	CDC34	chr19	+	chr19:537148-541338				chr19:537147-537148;chr19:541338-541339		1.75	4.95	3.23	4.35	3.95	3.39	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	1.67	1.79	0.00	5.00	3.70	1.52	2.56	3.23	10.00	3.45	6.90	3.17	2.63	1.85	3.12	8.82	4.17	3.12	2.00	0.00	3.57	3.29	2.73	-0.56	0.979216	1.000000
N	jcn_only_AD		chr20	-	chr20:57610182-57611555;chr20:57610182-57611551	chr20:57610182-57611525		chr20:57611526-57611551;chr20:57611552-57611555	chr20:57611551-57611552;chr20:57611555-57611556		93.33	100.00	96.77	95.24	100.00	93.33	97.92	100.00	96.92	100.00	95.92	97.44	100.00	100.00	100.00	98.47	100.00	98.67	NA	100.00	100.00	98.41	100.00	98.33	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	96.92	100.00	98.63	100.00	100.00	0.00	0.644697	0.818639
K	alternative_donor	AP2A2	chr11	+	chr11:932778-959436;chr11:946964-959436;chr11:933598-959436	chr11:926089-959436		chr11:926089-932777;chr11:932778-933597;chr11:933598-946963	chr11:926088-926089;chr11:932777-932778;chr11:933597-933598		100.00	93.33	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	93.33	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	96.66	100.00	3.34	0.181690	0.563271
N	jcn_only_AD	AAMDC	chr11	+	chr11:77532227-77553524;chr11:77532284-77553524	chr11:77532288-77553524		chr11:77532227-77532283;chr11:77532284-77532287	chr11:77532226-77532227;chr11:77532283-77532284		100.00	100.00	100.00	100.00	95.83	94.44	100.00	100.00	100.00	100.00	93.33	95.00	88.89	92.31	83.33	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.865259	0.930693
N	alternative_acceptor	MPP5,SIVA1	chr14	+	chr14:105223098-105225770;chr14:105223098-105225764	chr14:105223098-105225555		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		14.81	8.99	11.11	11.90	6.12	11.67	0.00	NA	0.00	6.67	3.23	NA	3.92	NA	8.70	5.88	7.69	NA	9.46	12.50	10.00	15.38	9.80	18.18	12.37	9.09	14.63	14.29	11.76	23.81	20.83	13.95	13.04	15.79	14.29	25.93	9.23	13.66	4.43	0.091474	0.597021
N	jcn_only_AA		chr19	+	chr19:47706998-47708360;chr19:47706998-47708318	chr19:47706998-47712415		chr19:47708319-47708360;chr19:47708361-47712415	chr19:47708360-47708361;chr19:47712415-47712416		100.00	100.00	94.83	91.67	100.00	NA	98.25	95.45	97.44	97.56	98.59	100.00	94.87	95.00	100.00	96.77	95.74	95.45	100.00	91.89	100.00	100.00	95.24	88.89	NA	91.30	92.68	93.33	100.00	100.00	100.00	93.94	100.00	93.18	100.00	100.00	100.00	95.22	-4.78	0.137920	0.663989
N	alternative_acceptor	PRKAG2	chr7	-	chr7:151254319-151257609	chr7:151254546-151257609		chr7:151254319-151254545	chr7:151254318-151254319		10.11	11.63	14.04	16.13	14.29	10.98	2.22	0.00	0.00	0.89	2.15	0.00	3.12	0.00	0.00	2.11	1.92	0.00	5.26	7.50	4.17	6.32	6.67	4.11	4.76	3.75	3.03	4.17	1.85	4.76	4.44	2.13	0.00	2.96	3.51	2.36	3.94	4.10	0.16	0.933284	0.980996
N	alternative_donor	TRPM2	chr21	+	chr21:45799081-45802600	chr21:45800864-45802600		chr21:45799081-45800863	chr21:45799080-45799081		0.00	5.88	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.00	0.00	NA	0.00	0.00	0.00	3.33	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	3.33	0.00	-3.33	0.112609	0.520337
N	cassette	PSMC3	chr11	-	chr11:47444525-47445979	chr11:47444525-47445596;chr11:47445735-47445979		chr11:47445597-47445734			100.00	94.50	97.67	100.00	98.89	100.00	99.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	97.65	100.00	100.00	99.11	99.53	100.00	0.47	0.304348	0.709176
K	alternative_donor	PQBP1	chrX	+	chrX:48755298-48755774;chrX:48755366-48755774	chrX:48755377-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		0.00	9.09	7.14	7.41	5.45	0.00	8.11	0.00	6.06	7.69	8.00	0.00	7.89	6.67	4.44	5.97	4.76	0.00	5.88	3.70	4.44	6.67	7.81	6.45	0.00	4.17	8.33	4.44	5.00	4.88	5.71	6.67	2.94	8.33	6.52	10.26	6.88	3.94	-2.95	0.246597	0.615567
K	intron_retention	SH3D21	chr1	+	chr1:36786400-36786515				chr1:36786399-36786400;chr1:36786515-36786516		16.67	13.33	18.18	13.76	28.89	11.46	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	10.59	23.08	11.76	7.89	17.24	9.52	18.11	21.43	21.43	7.69	0.00	18.18	18.84	18.52	20.29	12.50	14.29	8.11	15.72	20.13	4.41	0.666317	1.000000
N	cassette	CARD19	chr9	+	chr9:95870110-95874499;chr9:95873004-95874499;chr9:95870099-95874499;chr9:95872917-95874499	chr9:95870110-95874160,chr9:95872917-95874160,chr9:95870099-95874160,chr9:95873004-95874160;chr9:95874221-95874499		chr9:95874161-95874220			65.62	79.20	64.56	78.72	69.34	90.24	96.10	95.00	89.29	92.11	91.25	86.11	95.29	91.76	86.75	93.64	87.50	88.89	77.53	75.76	81.33	87.50	76.16	83.33	80.00	81.25	61.46	92.31	83.67	91.67	78.64	66.67	78.29	83.78	84.69	87.50	79.60	79.94	0.34	0.601798	0.850526
K	intron_retention	HDAC5	chr17	-	chr17:42156646-42157474				chr17:42156645-42156646;chr17:42157474-42157475		2.97	1.75	4.84	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.61	2.00	3.85	5.00	3.08	0.00	1.08	0.00	3.92	0.00	1.56	0.00	9.09	6.58	3.48	0.00	2.13	0.00	1.35	1.00	-0.35	0.822068	1.000000
K	cassette	IST1	chr16	+	chr16:71957284-71958671	chr16:71957284-71957993;chr16:71958185-71958671		chr16:71957994-71958184			3.37	0.00	2.14	0.00	0.00	NA	1.02	0.85	0.66	0.00	0.00	0.00	0.00	1.05	1.43	0.77	0.00	0.82	NA	1.43	0.00	2.82	2.20	1.90	NA	2.25	3.96	1.89	1.37	1.39	2.13	1.80	0.00	2.86	6.93	2.21	0.00	1.78	1.78	0.008702	0.292259
N	jcn_only_AD	RRBP1	chr20	-	chr20:17594866-17595381;chr20:17594866-17595414	chr20:17594866-17595384		chr20:17595382-17595384;chr20:17595385-17595414	chr20:17595384-17595385;chr20:17595414-17595415		7.98	10.76	3.33	7.89	3.28	5.56	0.00	3.31	2.08	0.00	2.60	4.31	2.74	1.10	3.37	2.82	0.00	3.19	5.80	8.45	4.58	8.00	6.67	8.20	8.81	5.52	3.66	3.03	0.00	3.41	10.47	8.75	10.19	9.26	6.00	8.70	7.30	6.75	-0.55	0.916434	0.958435
N	alternative_acceptor	NUMA1	chr11	-	chr11:71719892-71720012	chr11:71719930-71720012		chr11:71719892-71719929	chr11:71719891-71719892		5.13	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.363217	0.709013
K	alternative_first_exon	HNRNPUL1	chr19	+	chr19:41770891-41774127,chr19:41771027-41774127,chr19:41768922-41774127;chr19:41768488-41774127;chr19:41770598-41774127,chr19:41770704-41774127	chr19:41771249-41774127	chr19:41768401-41768487;chr19:41770327-41770597	chr19:41771027-41771248			6.67	5.26	8.20	NA	NA	NA	1.96	7.69	4.88	3.33	1.89	2.27	2.29	5.97	4.76	0.00	0.82	0.00	NA	7.69	NA	0.00	2.50	0.00	6.67	5.13	5.13	NA	0.00	NA	NA	9.38	NA	5.26	0.00	7.69	3.77	6.67	2.90	0.105448	0.279216
N	cassette	PFKL	chr21	+	chr21:45744801-45745843;chr21:45744801-45746041	chr21:45744801-45745035;chr21:45745148-45745843,chr21:45745148-45746041		chr21:45745036-45745147			94.79	93.66	96.49	97.67	97.09	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.29	93.75	93.86	94.44	92.71	95.00	89.74	100.00	94.25	100.00	98.10	100.00	91.89	89.83	83.08	100.00	95.12	97.80	91.70	97.40	5.70	0.211681	0.709176
N	alternative_donor		chr19	-	chr19:51013706-51014331;chr19:51013706-51014382	chr19:51013706-51014373		chr19:51014332-51014373;chr19:51014374-51014382	chr19:51014373-51014374;chr19:51014382-51014383		96.15	100.00	93.75	NA	100.00	100.00	100.00	89.47	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.00	100.00	96.97	NA	100.00	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	94.74	NA	NA	NA	100.00	98.08	-1.92	0.341745	0.650093
K	intron_retention	PACSIN2	chr22	-	chr22:43267476-43272142				chr22:43267475-43267476;chr22:43272142-43272143		2.47	0.00	2.99	10.00	0.00	NA	0.00	0.00	0.00	1.94	0.00	5.08	0.00	0.00	1.89	0.00	0.00	0.00	0.00	1.35	0.00	4.26	0.00	10.00	0.00	0.00	1.72	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	9.76	0.00	0.00	0.00	0.478573	1.000000
N	cassette	TBRG4	chr7	-	chr7:45143043-45144136;chr7:45143043-45145039	chr7:45143043-45143697;chr7:45143856-45145039,chr7:45143856-45144136		chr7:45143698-45143855			80.00	50.00	48.00	72.73	44.44	NA	93.10	92.86	90.62	81.58	83.33	100.00	90.62	93.75	95.12	84.00	90.91	100.00	54.55	60.00	68.18	55.17	32.35	78.26	NA	NA	48.00	73.91	50.00	82.61	53.85	56.00	47.37	60.00	48.00	90.62	54.55	80.00	25.45	0.513815	0.792299
N	alternative_donor	SLC25A28	chr10	-	chr10:101371124-101372299	chr10:101371124-101372216		chr10:101372217-101372299	chr10:101372299-101372300		13.33	0.00	17.05	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.55	0.00	0.62	0.62	1.15	0.00	0.00	NA	14.52	1.69	9.52	11.11	15.94	0.00	8.51	12.82	4.11	4.00	2.57	7.69	11.96	NA	11.63	18.52	11.70	0.00	8.10	8.10	0.030982	0.340056
N	alternative_donor		chr7	+	chr7:100026664-100033343	chr7:100031257-100033343		chr7:100026664-100031256	chr7:100026663-100026664		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	GRK6	chr5	+	chr5:176868055-176868737				chr5:176868054-176868055;chr5:176868737-176868738		7.69	0.00	6.35	0.00	0.00	NA	0.00	0.00	NA	8.33	4.35	NA	0.00	NA	NA	0.00	0.00	NA	5.00	7.14	3.85	NA	0.00	NA	0.00	0.00	5.08	0.00	5.00	NA	10.00	11.54	4.17	0.00	7.14	NA	0.00	7.14	7.14	0.993123	1.000000
K	intron_retention	RNF123	chr3	+	chr3:49758087-49758232				chr3:49758086-49758087;chr3:49758232-49758233		20.00	0.00	14.71	10.00	10.71	NA	28.57	NA	14.29	25.00	23.53	NA	36.36	NA	7.14	40.00	38.89	NA	6.90	8.33	13.33	35.00	14.71	63.16	5.56	7.14	14.29	36.36	31.25	60.87	9.09	10.53	3.57	16.67	18.52	37.93	6.23	8.71	2.48	0.986376	1.000000
N	alternative_acceptor	MBD6	chr12	+	chr12:57922793-57924937;chr12:57922793-57922942	chr12:57922793-57922946		chr12:57922943-57922946;chr12:57922947-57924937	chr12:57922946-57922947;chr12:57924937-57924938		1.89	2.75	1.69	6.25	3.90	NA	2.86	3.85	4.35	4.76	3.33	7.14	2.70	3.70	3.45	3.33	3.45	8.33	3.09	2.33	3.66	3.85	1.72	4.17	3.77	2.38	1.61	4.00	3.70	4.76	1.67	1.39	1.92	4.76	2.17	1.96	2.80	2.35	-0.45	0.649303	0.871596
K	cassette	NDUFS4	chr5	+	chr5:52942236-52978947	chr5:52942236-52954380;chr5:52954455-52978947		chr5:52954381-52954454			98.11	93.70	100.00	98.28	98.18	98.11	100.00	100.00	96.15	100.00	96.92	96.08	97.53	100.00	96.43	100.00	100.00	95.74	94.12	94.23	97.03	100.00	96.00	91.89	100.00	93.62	96.43	100.00	95.88	97.33	100.00	96.43	95.69	95.52	97.14	98.48	96.61	99.06	2.45	0.634212	0.867338
N	jcn_only_AA	TMEM128	chr4	-	chr4:4237984-4239553;chr4:4237978-4239553	chr4:4238805-4239553		chr4:4237978-4237983;chr4:4237984-4238804	chr4:4237977-4237978;chr4:4237983-4237984		0.00	0.00	6.33	NA	0.00	NA	3.45	13.64	3.92	4.76	9.68	0.00	13.33	20.00	8.77	21.05	10.26	9.09	0.00	0.00	0.00	7.69	5.26	0.00	NA	8.51	0.00	16.67	5.88	4.55	0.00	2.86	0.00	0.00	8.89	10.26	0.00	4.25	4.25	0.419376	0.691465
N	jcn_only_AA	FCGR2A	chr1	+	chr1:161479865-161480586;chr1:161479865-161480623	chr1:161479865-161480630		chr1:161480587-161480623;chr1:161480624-161480630	chr1:161480623-161480624;chr1:161480630-161480631		0.00	0.00	3.50	0.00	0.00	0.00	0.00	3.30	0.00	4.02	0.00	3.91	0.00	0.00	4.76	0.00	0.00	3.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.83	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	FES	chr15	+	chr15:91436425-91436520				chr15:91436424-91436425;chr15:91436520-91436521		2.22	4.76	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	2.70	0.00	0.00	NA	3.12	NA	16.98	0.00	4.17	NA	3.85	NA	0.00	8.33	4.12	0.00	5.26	3.12	3.41	0.00	-3.41	0.377168	1.000000
K	intron_retention	STUB1	chr16	+	chr16:732282-732363				chr16:732281-732282;chr16:732363-732364		10.84	11.92	11.25	13.28	11.83	9.71	13.60	8.00	11.67	15.49	12.96	14.29	20.93	5.13	15.28	23.81	20.87	26.32	15.82	17.74	17.86	20.00	24.58	26.23	10.36	12.50	10.28	15.62	14.48	20.00	13.76	20.54	13.47	24.71	18.25	25.25	13.54	11.67	-1.87	0.800299	1.000000
N	jcn_only_AA	CFLAR,WDR75	chr2	+	chr2:201994870-201997821;chr2:201994870-201997751	chr2:201994870-201995643		chr2:201995644-201997751;chr2:201997752-201997821	chr2:201997751-201997752;chr2:201997821-201997822		5.13	0.00	3.64	0.00	0.00	0.00	0.00	1.04	0.00	1.27	0.00	0.79	0.00	2.09	0.45	0.31	0.00	0.66	NA	2.99	0.00	0.68	0.00	1.13	NA	2.36	0.00	1.12	0.00	0.00	2.59	0.00	0.00	2.04	0.00	1.91	0.00	2.47	2.47	0.004617	0.450187
K	intron_retention		chr6	-	chr6:86387907-86388411				chr6:86387906-86387907;chr6:86388411-86388412		14.71	3.87	8.89	4.59	5.92	3.48	7.06	12.50	13.79	5.56	6.19	0.00	15.79	NA	20.00	15.62	25.00	NA	3.32	8.11	6.82	8.08	7.20	8.57	2.41	30.77	13.51	8.62	9.20	5.95	13.19	8.70	5.98	7.69	7.87	6.61	4.93	13.19	8.26	0.202645	1.000000
K	intron_retention	ARHGAP4	chrX	-	chrX:153175540-153175624				chrX:153175539-153175540;chrX:153175624-153175625		4.81	8.17	8.82	5.45	11.72	1.56	0.00	3.23	0.00	0.00	1.10	0.00	2.62	0.00	6.67	0.00	1.42	0.00	8.78	3.77	5.41	5.00	9.15	4.17	9.83	1.85	7.06	5.00	8.33	1.67	6.67	5.00	8.02	4.26	6.76	3.09	8.09	3.50	-4.59	0.556300	1.000000
K	cassette	GUK1	chr1	+	chr1:228328990-228333211	chr1:228328990-228329326;chr1:228329531-228333211		chr1:228329327-228329530			10.00	0.00	NA	NA	12.50	NA	7.50	15.79	18.75	11.54	15.15	5.88	8.33	23.08	18.18	13.33	5.56	8.33	NA	NA	18.75	10.00	13.33	NA	8.33	5.88	NA	7.69	16.67	10.00	15.38	28.57	8.33	17.65	16.67	16.67	8.33	15.38	7.05	0.062930	0.621473
N	coord_cassette	TAX1BP1	chr7	+	chr7:27839710-27867356	chr7:27839710-27855967;chr7:27856014-27856508;chr7:27856658-27867356		chr7:27855968-27856013;chr7:27856509-27856657			93.06	100.00	92.23	100.00	91.38	91.67	100.00	95.89	93.00	96.23	100.00	93.42	91.07	95.38	93.04	90.38	95.77	92.00	91.67	84.06	93.75	91.30	89.41	88.06	100.00	92.65	94.25	88.10	95.31	90.77	91.07	92.13	93.33	88.10	93.15	89.58	96.66	92.86	-3.81	0.143856	0.643829
N	jcn_only_AA		chr11	+	chr11:74914473-74914912;chr11:74914473-74925508;chr11:74914473-74921929;chr11:74914473-74914893;chr11:74914473-74925486	chr11:74914473-74915444		chr11:74914894-74914912;chr11:74914913-74915444;chr11:74915445-74921929;chr11:74921930-74925486;chr11:74925487-74925508	chr11:74914912-74914913;chr11:74915444-74915445;chr11:74921929-74921930;chr11:74925486-74925487;chr11:74925508-74925509		98.40	71.09	96.59	83.33	81.82	82.61	99.31	100.00	100.00	100.00	98.05	100.00	99.26	98.36	100.00	100.00	99.32	97.96	73.12	94.39	86.36	92.86	90.68	86.21	67.12	95.00	93.62	92.31	96.28	86.67	NA	100.00	64.38	88.24	96.08	100.00	72.11	98.36	26.25	0.038012	0.663989
N	jcn_only_AD	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610967-242611605;chr2:242610841-242611605	chr2:242610821-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		93.48	100.00	95.65	100.00	97.83	98.00	100.00	100.00	92.00	94.74	94.59	100.00	95.65	94.12	100.00	90.00	100.00	NA	99.02	87.50	95.45	93.55	96.43	100.00	95.88	100.00	95.92	100.00	95.92	89.47	98.00	92.86	93.86	89.66	97.62	96.88	97.45	96.06	-1.39	0.425830	0.687492
K	intron_retention	NR1H2	chr19	+	chr19:50881697-50881778				chr19:50881696-50881697;chr19:50881778-50881779		2.44	8.82	2.38	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	5.26	4.35	0.00	0.00	2.90	0.00	0.00	0.00	6.38	0.00	1.75	5.26	5.00	7.46	0.00	2.17	1.79	0.00	0.00	1.22	1.22	0.486652	1.000000
K	intron_retention	FLOT1	chr6	-	chr6:30698505-30698695				chr6:30698504-30698505;chr6:30698695-30698696		4.27	3.49	4.11	3.08	2.15	2.78	2.00	0.61	0.83	0.00	2.86	3.17	1.79	0.00	0.78	0.00	1.00	0.00	4.00	5.38	2.00	5.00	3.85	6.56	0.00	3.45	4.05	2.99	0.00	2.63	5.58	8.72	3.51	7.27	7.27	6.59	2.75	3.86	1.11	0.628980	1.000000
K	intron_retention		chr16	+	chr16:31045647-31045782				chr16:31045646-31045647;chr16:31045782-31045783		9.52	16.44	10.23	9.70	13.18	6.48	2.08	2.02	1.20	1.15	1.36	0.00	1.27	3.26	3.41	1.17	2.54	1.04	12.64	9.43	8.18	11.92	14.83	6.71	25.00	8.33	9.43	5.92	11.59	5.59	12.12	9.70	13.13	8.46	9.46	6.90	12.89	8.88	-4.01	0.554747	1.000000
K	intron_retention	NELFE	chr6	-	chr6:31921609-31921856				chr6:31921608-31921609;chr6:31921856-31921857		6.41	5.88	9.86	12.90	9.70	12.59	2.08	0.00	0.00	2.44	2.33	0.00	0.00	0.00	7.14	2.04	2.08	7.69	6.75	8.96	6.92	16.33	12.66	13.64	3.66	13.33	9.68	9.62	8.33	7.04	18.03	23.73	7.55	18.18	14.89	17.39	4.77	7.69	2.92	0.604487	1.000000
K	alternative_acceptor	WDFY2	chr13	+	chr13:52325552-52329493	chr13:52325552-52326998		chr13:52326999-52329493	chr13:52329493-52329494		6.25	16.67	7.69	NA	NA	NA	3.57	2.63	0.00	NA	0.00	NA	4.17	6.06	4.76	NA	5.88	NA	NA	8.33	0.00	NA	NA	NA	7.69	8.82	7.14	NA	NA	NA	6.67	6.67	NA	10.00	NA	NA	5.93	6.46	0.53	0.648727	0.871286
N	alternative_acceptor	MTCH1	chr6	-	chr6:36937859-36938181	chr6:36937891-36938181		chr6:36937859-36937890	chr6:36937858-36937859		100.00	100.00	100.00	100.00	98.39	92.86	100.00	100.00	100.00	100.00	98.63	100.00	98.88	100.00	100.00	98.57	100.00	100.00	100.00	98.28	100.00	96.43	97.92	97.40	100.00	98.29	100.00	97.18	97.44	97.50	100.00	100.00	100.00	100.00	100.00	97.28	100.00	100.00	0.00	0.373581	0.709013
K	jcn_only_AD	USF1	chr1	-	chr1:161011202-161011440;chr1:161011202-161011623	chr1:161011202-161011524		chr1:161011441-161011524;chr1:161011525-161011623	chr1:161011524-161011525;chr1:161011623-161011624		0.00	0.00	2.20	0.00	0.00	NA	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	3.45	0.00	3.28	0.00	0.00	0.00	1.37	6.25	0.00	0.00	1.39	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.631345	0.817497
N	alternative_acceptor	VASP	chr19	+	chr19:46025840-46025949;chr19:46025840-46025975	chr19:46025840-46025978		chr19:46025950-46025975;chr19:46025976-46025978	chr19:46025975-46025976;chr19:46025978-46025979		4.86	7.78	4.11	3.23	4.92	NA	11.49	2.50	8.11	8.24	8.39	9.25	3.95	5.21	0.00	11.03	7.60	5.38	0.00	7.44	5.26	6.58	2.83	4.35	0.00	3.75	2.06	3.00	7.25	3.12	4.26	3.75	5.26	3.49	1.98	4.76	4.61	4.56	-0.04	0.969885	0.992650
K	intron_retention	POLD4	chr11	-	chr11:67119491-67120161				chr11:67119490-67119491;chr11:67120161-67120162		9.41	3.29	6.52	2.80	3.08	2.96	0.00	0.00	0.78	0.00	0.00	0.00	0.00	0.75	0.51	0.00	0.00	0.00	2.55	5.10	2.04	2.08	3.82	2.50	5.14	5.88	5.61	2.63	2.20	0.97	6.73	4.05	1.37	3.70	4.10	2.61	1.96	5.49	3.53	0.586482	1.000000
K	intron_retention	DYNLT1	chr6	-	chr6:159058238-159058802				chr6:159058237-159058238;chr6:159058802-159058803		0.98	0.00	3.64	0.77	0.00	0.92	0.00	0.25	0.00	0.00	0.00	0.29	0.00	0.23	0.61	0.00	0.00	0.56	0.00	1.68	1.40	4.58	1.81	2.75	0.00	2.04	1.96	3.69	0.64	1.33	1.87	2.96	0.00	5.71	1.55	2.70	0.00	1.33	1.33	0.057302	1.000000
K	intron_retention	SLC39A13	chr11	+	chr11:47434019-47434950				chr11:47434018-47434019;chr11:47434950-47434951		6.98	0.00	5.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	2.04	0.00	0.00	3.23	0.00	3.03	4.17	0.00	0.00	4.17	0.00	3.57	8.33	NA	3.57	2.38	0.00	6.67	6.90	2.78	0.00	3.40	3.40	0.381992	1.000000
K	intron_retention	ITGAX	chr16	+	chr16:31372535-31373156				chr16:31372534-31372535;chr16:31373156-31373157		14.75	23.53	24.59	NA	21.43	NA	1.20	3.12	0.00	0.67	2.15	0.00	2.08	2.70	8.33	1.75	0.85	0.00	NA	9.80	13.64	14.29	16.84	7.14	NA	10.53	16.33	7.79	8.70	3.03	9.52	11.90	20.00	10.32	6.80	4.27	11.04	9.66	-1.38	0.849516	1.000000
N	alternative_donor	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295843-71297631;chr2:71295972-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71295467-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		9.09	0.00	0.00	NA	NA	NA	4.65	1.92	0.00	5.41	4.17	0.00	4.55	0.00	0.00	2.86	7.84	2.78	0.00	0.00	0.00	9.09	2.94	0.00	0.00	1.59	4.76	0.00	4.76	0.00	0.00	15.79	0.00	0.00	0.00	4.00	0.00	0.80	0.80	0.752024	0.899031
N	jcn_only_AA	KIAA0368	chr9	-	chr9:114124450-114125867;chr9:114124413-114125867	chr9:114125579-114125867		chr9:114124413-114124449;chr9:114124450-114125578	chr9:114124412-114124413;chr9:114124449-114124450		7.14	0.00	0.00	0.00	0.00	0.77	0.00	3.70	8.57	0.00	0.00	4.76	0.00	13.33	6.52	7.02	0.00	0.00	0.00	4.17	0.00	0.00	2.50	5.71	0.00	0.00	3.77	3.64	3.75	2.24	0.00	5.56	0.00	3.95	7.46	3.03	0.00	3.94	3.94	0.069271	0.663989
K	cassette	RBM39	chr20	-	chr20:34301019-34302106	chr20:34301019-34301623;chr20:34301780-34302106		chr20:34301624-34301779			7.83	2.11	8.18	4.08	2.20	2.56	0.00	4.44	1.54	1.49	1.92	2.33	3.03	2.78	7.25	2.40	0.00	6.25	1.67	6.06	3.90	3.92	4.44	5.43	0.00	9.38	6.38	6.15	4.82	10.47	9.91	7.77	4.62	7.33	3.75	8.46	1.89	6.95	5.06	0.006894	0.267181
K	intron_retention	FBXL15	chr10	+	chr10:104180940-104181110				chr10:104180939-104180940;chr10:104181110-104181111		28.00	51.72	30.77	20.00	44.44	14.81	70.59	22.22	23.08	NA	NA	NA	47.83	25.00	20.00	17.65	NA	NA	45.45	22.22	17.95	9.09	25.93	14.29	62.96	12.00	29.03	21.05	28.57	11.11	9.09	16.28	33.33	30.00	21.43	12.00	49.77	22.22	-27.55	0.374385	1.000000
K	intron_retention	IFI35	chr17	+	chr17:41165391-41165492				chr17:41165390-41165391;chr17:41165492-41165493		9.49	14.63	20.69	14.29	11.11	10.84	0.00	3.65	2.51	7.14	0.00	4.17	0.00	3.97	4.76	4.35	0.00	5.19	6.25	10.04	8.57	25.00	5.88	15.46	0.00	10.07	14.89	20.22	12.50	13.28	9.70	13.10	16.67	33.33	10.53	14.58	3.12	9.59	6.47	0.886282	1.000000
N	cassette	ANO10	chr3	-	chr3:43408467-43591211	chr3:43408467-43474102;chr3:43474220-43591211		chr3:43474103-43474219			100.00	100.00	100.00	NA	100.00	NA	92.59	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr14	+	chr14:103601689-103602145				chr14:103601688-103601689;chr14:103602145-103602146		79.90	81.48	83.83	72.00	76.19	69.57	66.43	77.73	81.61	46.92	48.87	44.33	67.72	80.69	82.93	56.96	55.33	43.40	69.57	74.59	67.00	73.09	79.61	68.70	80.39	80.50	84.95	70.86	72.14	65.78	73.87	77.30	81.25	76.99	75.38	73.54	74.98	78.81	3.84	0.572977	1.000000
N	jcn_only_AD	GRK6	chr5	+	chr5:176860667-176860914;chr5:176860678-176860914	chr5:176860671-176860914		chr5:176860667-176860670;chr5:176860671-176860677	chr5:176860666-176860667;chr5:176860670-176860671		6.06	0.00	3.57	NA	0.00	NA	4.76	0.00	0.00	4.35	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	4.17	0.00	5.26	NA	NA	0.00	3.51	0.00	0.00	NA	0.00	6.38	0.00	3.33	0.00	18.18	0.00	0.00	0.00	0.911534	0.957274
N	coord_cassette	SPPL2A	chr15	-	chr15:51014399-51018517	chr15:51014399-51017417;chr15:51017521-51018269;chr15:51018324-51018517		chr15:51017418-51017520;chr15:51018270-51018323			100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	92.31	100.00	93.10	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	96.70	100.00	100.00	100.00	97.01	100.00	99.02	-0.98	0.143998	0.643829
K	intron_retention	CPSF3L	chr1	-	chr1:1248973-1249111				chr1:1248972-1248973;chr1:1249111-1249112		2.13	2.82	8.20	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	2.13	0.00	4.44	0.00	5.71	0.00	2.38	7.14	1.82	0.00	3.70	0.00	6.98	0.00	5.26	0.00	0.00	0.00	4.08	5.80	1.49	2.44	2.56	0.00	2.25	1.06	-1.19	0.978314	1.000000
N	alternative_acceptor	ABCF3	chr3	+	chr3:183907720-183908786	chr3:183907720-183908764		chr3:183908765-183908786	chr3:183908786-183908787		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	alternative_acceptor	PDXK	chr21	+	chr21:45163689-45163819;chr21:45163689-45164351	chr21:45163689-45165959		chr21:45163820-45164351;chr21:45164352-45165959	chr21:45164351-45164352;chr21:45165959-45165960		94.57	93.88	89.36	98.53	98.22	100.00	99.02	99.02	98.02	99.18	98.89	100.00	98.88	99.02	97.22	99.34	99.45	100.00	98.44	95.80	98.91	96.83	94.66	95.29	92.56	93.33	95.12	98.19	98.27	98.17	93.40	92.31	97.42	92.06	91.33	94.92	97.93	95.19	-2.75	0.600311	0.847202
K	jcn_only_AD	RPL6	chr12	-	chr12:112846461-112847390	chr12:112846461-112847214		chr12:112847215-112847390	chr12:112847390-112847391		47.37	32.56	52.50	36.84	18.75	53.85	17.19	58.33	38.24	28.79	18.84	16.28	14.75	45.45	37.14	19.70	26.60	10.53	6.67	17.65	18.87	21.05	13.21	100.00	NA	45.45	53.57	9.30	7.32	11.90	17.86	27.27	4.88	40.00	29.41	40.00	14.75	45.45	30.70	0.022727	0.350473
K	intron_retention	BCKDK	chr16	+	chr16:31123349-31123517				chr16:31123348-31123349;chr16:31123517-31123518		91.11	88.24	96.97	90.62	88.24	84.85	100.00	100.00	91.67	94.44	96.23	92.86	100.00	96.30	93.55	100.00	92.86	90.00	93.48	88.89	87.80	80.95	88.10	100.00	92.31	100.00	93.75	91.18	92.16	85.00	100.00	92.31	88.14	89.66	90.24	82.35	92.90	98.15	5.25	0.885514	1.000000
K	intron_retention	NDUFS3,PTPMT1	chr11	+	chr11:47587349-47587457				chr11:47587348-47587349;chr11:47587457-47587458		8.51	12.50	18.97	17.39	19.40	13.04	12.17	8.11	12.16	15.00	13.00	8.89	5.34	5.41	8.05	7.00	8.40	5.56	8.51	14.29	13.19	11.11	15.71	13.04	3.70	4.00	6.90	20.59	12.50	6.90	9.30	11.29	13.16	19.35	15.69	9.52	10.34	8.31	-2.03	0.768045	1.000000
K	intron_retention	CD2BP2	chr16	-	chr16:30366029-30366532				chr16:30366028-30366029;chr16:30366532-30366533		0.00	0.00	0.00	0.00	0.00	0.00	2.90	1.85	1.20	7.14	3.33	0.00	1.54	0.00	1.14	1.72	1.59	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.566964	1.000000
K	jcn_only_AD	PSMA4	chr15	+	chr15:78832806-78834246	chr15:78832882-78834246		chr15:78832806-78832881	chr15:78832805-78832806		96.79	100.00	97.42	94.12	97.30	NA	98.45	99.25	98.95	98.33	98.18	97.18	99.32	99.23	99.10	98.33	99.15	100.00	100.00	96.55	97.56	95.06	98.40	99.13	NA	98.88	97.17	95.95	97.92	98.33	96.92	97.84	100.00	96.88	97.94	100.00	100.00	97.90	-2.10	0.031042	0.409705
K	coord_cassette	DBNL	chr7	+	chr7:44089880-44096355	chr7:44089880-44091428;chr7:44091542-44092465;chr7:44092541-44096355		chr7:44091429-44091541;chr7:44092466-44092540			98.11	100.00	100.00	NA	100.00	NA	99.25	100.00	100.00	100.00	98.47	98.55	100.00	100.00	100.00	100.00	100.00	98.68	92.86	100.00	96.67	95.00	100.00	96.55	100.00	98.70	97.50	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	99.35	-0.65	0.854822	0.949148
K	alternative_first_exon	PSMA4	chr15	+	chr15:78832531-78834246,chr15:78833293-78834246;chr15:78832806-78834246,chr15:78832882-78834246	chr15:78833178-78834246	chr15:78832763-78832805	chr15:78833156-78833177			2.52	0.00	0.79	6.67	0.00	NA	0.00	4.27	3.16	2.00	2.17	5.22	0.83	3.91	3.12	1.01	0.00	5.17	9.09	3.47	0.00	0.00	0.97	3.96	NA	4.26	1.11	0.00	0.00	1.31	6.03	3.36	0.00	0.00	3.66	3.03	0.00	4.08	4.08	0.312816	0.523821
K	intron_retention	ABCC10	chr6	+	chr6:43416765-43416844				chr6:43416764-43416765;chr6:43416844-43416845		4.55	17.14	8.00	NA	6.67	NA	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	5.00	NA	13.04	NA	NA	0.00	4.00	9.09	0.00	9.09	6.25	4.76	17.65	5.26	17.65	4.17	0.00	0.00	0.00	0.596992	1.000000
N	jcn_only_AA	IFNAR2	chr21	+	chr21:34633033-34634865;chr21:34633033-34635116;chr21:34633033-34638316	chr21:34633033-34635097		chr21:34634866-34635097;chr21:34635098-34635116;chr21:34635117-34638316	chr21:34635097-34635098;chr21:34635116-34635117;chr21:34638316-34638317		53.33	0.00	72.73	0.00	4.41	2.22	61.54	59.30	71.07	69.01	63.95	64.71	44.05	61.54	68.04	41.10	65.45	57.30	0.00	65.00	5.26	41.18	39.19	64.15	0.00	69.39	62.90	27.27	26.09	19.35	47.83	48.00	2.33	33.33	53.97	51.61	1.17	60.42	59.26	0.012870	0.486024
K	cassette	LUC7L3	chr17	+	chr17:48824064-48827861	chr17:48824064-48826579;chr17:48826706-48827861		chr17:48826580-48826705			2.53	2.56	6.14	6.90	3.12	0.00	2.44	2.33	0.00	2.15	1.00	3.23	0.00	5.41	0.97	4.21	2.48	3.33	2.86	5.19	1.92	7.27	8.97	10.00	2.86	0.00	7.94	4.84	3.61	3.17	3.12	5.00	2.86	4.62	7.69	7.55	2.71	2.83	0.12	0.401992	0.717168
K	jcn_only_AD	PPP4C	chr16	+	chr16:30087416-30087635	chr16:30087422-30087635		chr16:30087416-30087421	chr16:30087415-30087416		17.92	12.75	22.40	15.79	13.64	9.09	15.69	24.16	21.80	21.56	22.22	22.12	13.83	23.36	20.16	20.20	18.48	17.09	10.71	22.83	19.83	20.48	15.38	18.57	6.25	17.86	17.27	16.22	14.29	18.95	23.66	25.93	15.79	16.18	21.54	21.43	13.29	23.09	9.80	0.000801	0.078190
K	alternative_last_exon	IQSEC1	chr3	-	chr3:12940934-12944272	chr3:12943023-12944272	chr3:12938719-12940933	chr3:12942852-12943022			2.22	0.00	3.95	3.33	0.82	3.45	8.70	10.81	4.76	14.81	16.87	25.00	8.57	12.50	16.67	24.00	19.35	38.46	0.00	4.26	0.00	0.00	2.67	NA	0.00	0.00	0.00	7.84	2.78	12.50	5.56	0.00	0.00	8.00	3.85	4.76	0.00	4.91	4.91	0.290234	0.491468
K	jcn_only_AA	CNBP	chr3	-	chr3:128890121-128890288;chr3:128890153-128890288;chr3:128890127-128890288	chr3:128890124-128890288		chr3:128890121-128890123;chr3:128890124-128890126;chr3:128890127-128890152	chr3:128890120-128890121;chr3:128890123-128890124;chr3:128890126-128890127		27.69	18.99	27.51	38.46	36.17	NA	23.60	23.88	24.89	26.50	29.61	23.81	25.68	25.42	24.23	27.89	26.91	24.73	36.84	26.50	26.25	23.76	32.20	30.00	NA	24.44	25.54	22.13	24.55	29.49	32.00	26.09	30.43	31.09	29.60	30.43	25.68	25.96	0.28	0.895301	0.963638
K	alternative_first_exon	UBE2D2	chr5	+	chr5:138941401-138979956	chr5:138941993-138979956	chr5:138940751-138941400	chr5:138941614-138941992			3.85	0.00	2.44	8.33	10.53	NA	4.00	2.94	5.41	7.04	5.08	9.76	3.92	5.56	2.63	6.10	4.55	4.76	NA	5.00	5.00	5.26	1.69	5.88	NA	3.85	6.45	0.00	2.56	3.33	5.88	4.00	10.00	14.71	9.38	6.98	3.96	4.42	0.46	0.988331	0.992047
N	cassette	GTF2A2	chr15	-	chr15:59934462-59949604;chr15:59942964-59949604;chr15:59942973-59949604	chr15:59942964-59944404,chr15:59934462-59944404,chr15:59942973-59944404;chr15:59944526-59949604		chr15:59944405-59944525			100.00	100.00	97.14	91.30	100.00	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	92.31	100.00	100.00	97.62	NA	100.00	100.00	94.74	100.00	100.00	94.12	98.44	94.29	100.00	98.55	100.00	100.00	100.00	0.00	0.847107	0.949198
K	cassette	CLNS1A	chr11	-	chr11:77330741-77336007	chr11:77330741-77333544;chr11:77333719-77336007		chr11:77333545-77333718			92.86	100.00	100.00	NA	96.00	NA	96.88	93.75	98.90	100.00	96.36	100.00	100.00	88.89	96.91	92.50	96.88	92.00	94.12	100.00	100.00	94.12	91.43	90.00	NA	83.33	97.37	90.00	91.89	92.86	NA	91.11	88.89	90.00	95.65	100.00	96.88	92.86	-4.02	0.260478	0.709176
N	jcn_only_AD	IKBKB	chr8	+	chr8:42182880-42183487;chr8:42180017-42183487	chr8:42180013-42183487		chr8:42180013-42180016;chr8:42180017-42182879	chr8:42180012-42180013;chr8:42180016-42180017		100.00	100.00	100.00	100.00	93.55	90.48	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	90.00	96.43	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AA	PSMF1	chr20	+	chr20:1145121-1146870	chr20:1145121-1145672		chr20:1145673-1146870	chr20:1146870-1146871		96.26	100.00	93.26	98.31	96.52	100.00	90.78	93.75	89.47	93.55	83.33	94.79	86.47	94.62	83.56	91.92	82.35	88.89	100.00	93.10	97.59	94.74	93.07	94.44	100.00	95.97	94.38	95.65	95.10	98.35	97.60	98.28	97.62	95.00	95.29	95.93	98.81	95.30	-3.52	0.817759	0.926775
K	jcn_only_AA	DGUOK	chr2	+	chr2:74174034-74177727;chr2:74174034-74177711	chr2:74174034-74177753		chr2:74177712-74177727;chr2:74177728-74177753	chr2:74177727-74177728;chr2:74177753-74177754		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	NA	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	ABHD4	chr14	+	chr14:23080599-23080909				chr14:23080598-23080599;chr14:23080909-23080910		100.00	100.00	100.00	100.00	97.78	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.19	95.65	100.00	100.00	100.00	98.25	100.00	100.00	98.33	96.49	100.00	100.00	100.00	0.00	0.493366	1.000000
K	intron_retention		chr7	-	chr7:100171024-100171219				chr7:100171023-100171024;chr7:100171219-100171220		78.95	80.36	82.61	NA	83.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	70.27	84.62	78.26	NA	75.00	NA	69.81	85.71	73.08	NA	84.62	NA	83.33	86.21	79.31	NA	NA	NA	74.79	83.97	9.19	0.272341	1.000000
K	intron_retention		chr4	-	chr4:844873-845537				chr4:844872-844873;chr4:845537-845538		16.28	8.46	12.04	10.47	7.69	10.34	1.75	1.20	0.00	1.82	0.00	3.33	0.00	0.00	3.95	1.89	3.23	0.00	10.98	13.89	8.51	12.12	9.18	16.39	3.49	12.40	12.90	5.17	7.14	11.59	15.84	16.67	11.50	16.06	11.36	21.43	5.98	13.14	7.17	0.518192	1.000000
K	intron_retention	SELO	chr22	+	chr22:50655558-50655633				chr22:50655557-50655558;chr22:50655633-50655634		1.43	3.21	2.17	2.04	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	2.70	1.72	0.00	3.17	0.00	3.30	0.00	0.00	0.00	0.00	0.00	11.94	5.26	10.61	0.00	0.00	1.72	3.25	0.71	-2.54	0.915132	1.000000
K	intron_retention	ATP5A1	chr18	-	chr18:43669699-43669788				chr18:43669698-43669699;chr18:43669788-43669789		2.27	0.00	4.40	0.00	1.28	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	0.00	3.37	0.00	3.23	2.46	6.67	0.00	0.00	1.96	0.00	1.36	2.90	7.27	5.67	2.13	2.25	2.50	3.02	0.00	1.14	1.14	0.396209	1.000000
N	jcn_only_AD	PDPN	chr1	+	chr1:13940907-13942399;chr1:13940911-13942399	chr1:13940901-13942399		chr1:13940901-13940906;chr1:13940907-13940910	chr1:13940900-13940901;chr1:13940906-13940907		37.08	52.78	33.48	37.25	38.89	28.72	NA	35.88	41.28	40.62	47.62	46.15	41.38	33.61	38.87	33.33	48.48	41.94	29.31	34.56	37.93	32.86	42.27	27.06	38.46	32.36	36.77	30.17	32.14	37.91	35.37	35.05	50.00	28.95	44.12	26.67	41.38	34.97	-6.41	0.146267	0.657607
N	cassette	C2	chr6	+	chr6:31912631-31912954;chr6:31912631-31914149	chr6:31912631-31912756;chr6:31912807-31912954,chr6:31912807-31914149		chr6:31912757-31912806			85.71	85.14	81.42	89.26	90.27	86.67	96.00	95.97	94.85	96.10	97.20	96.77	97.59	94.83	93.63	100.00	98.55	94.83	82.00	77.61	88.50	83.61	82.54	79.01	92.11	88.83	86.30	93.27	94.57	93.00	83.13	76.52	84.62	79.75	79.45	81.56	88.62	87.27	-1.36	0.638869	0.868138
N	cassette	PLOD1	chr1	+	chr1:12023694-12024700	chr1:12023694-12024231;chr1:12024358-12024700		chr1:12024232-12024357			91.25	89.36	92.19	NA	80.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	91.76	100.00	95.83	100.00	100.00	91.67	100.00	89.36	87.93	94.37	100.00	100.00	0.00	1.000000	1.000000
N	alternative_donor	CCNL1	chr3	-	chr3:49159804-49160617;chr3:49159804-49160157	chr3:49159804-49160136		chr3:49160137-49160157;chr3:49160158-49160617	chr3:49160157-49160158;chr3:49160617-49160618		93.75	100.00	94.44	NA	100.00	90.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	NA	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	NA	92.31	100.00	NA	93.75	100.00	100.00	94.60	-5.40	0.087126	0.475124
N	alternative_acceptor	RP11-54O7.14	chr1	+	chr1:990596-991277	chr1:990596-990756		chr1:990757-991277	chr1:991277-991278		96.59	97.63	98.17	98.33	100.00	99.49	96.36	96.34	96.60	100.00	97.56	100.00	94.55	97.37	100.00	100.00	100.00	100.00	97.44	96.32	96.99	93.94	100.00	100.00	100.00	97.24	96.83	95.65	100.00	96.64	96.95	99.14	100.00	96.92	100.00	97.66	97.53	96.77	-0.76	0.370376	0.709013
N	jcn_only_AD	TRPM2	chr21	+	chr21:45773749-45774530	chr21:45774380-45774530		chr21:45773749-45774379	chr21:45773748-45773749		2.86	0.00	9.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.00	0.00	0.177455	0.657607
K	cassette	PIH1D1	chr19	-	chr19:49950357-49951083	chr19:49950357-49950594;chr19:49950675-49951083		chr19:49950595-49950674			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.43	100.00	96.15	NA	100.00	NA	96.10	100.00	100.00	NA	100.00	100.00	96.67	97.22	98.51	91.67	94.44	100.00	99.25	100.00	0.75	0.573372	0.831087
K	intron_retention		chr1	+	chr1:16057753-16058383				chr1:16057752-16057753;chr1:16058383-16058384		4.10	4.41	3.53	1.79	0.98	0.00	0.00	0.88	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.65	0.00	0.00	5.41	2.50	1.35	3.77	4.22	2.40	1.59	2.07	2.80	1.02	0.68	0.00	5.30	4.88	3.23	3.11	4.38	1.89	2.41	2.29	-0.12	0.984983	1.000000
K	cassette	RNF40	chr16	+	chr16:30776821-30777699	chr16:30776821-30777483;chr16:30777604-30777699		chr16:30777484-30777603			93.55	100.00	90.00	NA	NA	NA	97.67	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.55	NA	90.00	90.91	91.67	100.00	100.00	100.00	NA	93.75	NA	84.62	94.29	NA	90.48	91.67	92.59	100.00	98.28	-1.72	0.206907	0.709176
N	cassette	PQLC1	chr18	-	chr18:77664184-77693968;chr18:77664184-77703328	chr18:77664184-77679183;chr18:77679401-77703328,chr18:77679401-77693968		chr18:77679184-77679400			72.15	73.58	68.75	72.73	72.22	68.09	87.37	85.00	89.47	78.75	81.05	81.48	80.65	78.26	78.79	80.00	75.00	86.84	84.13	87.50	86.27	80.00	81.43	82.86	82.67	77.27	79.17	71.11	76.12	82.50	75.00	87.18	82.46	75.81	78.12	79.57	82.56	77.77	-4.80	0.414305	0.727796
K	intron_retention		chr12	+	chr12:113354544-113355351				chr12:113354543-113354544;chr12:113355351-113355352		3.47	0.00	9.09	0.00	0.00	3.70	0.00	0.38	0.59	2.78	0.00	1.30	0.00	0.39	1.14	1.90	0.00	0.43	4.17	2.70	0.00	8.33	0.00	7.57	0.00	2.88	1.39	5.71	0.00	2.95	2.37	5.33	0.00	12.75	0.00	9.76	0.00	2.54	2.54	0.371813	1.000000
N	cassette	DPM1	chr20	-	chr20:49552800-49558567	chr20:49552800-49557401;chr20:49557471-49558567		chr20:49557402-49557470			94.12	100.00	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	95.65	100.00	94.05	100.00	90.00	90.32	100.00	100.00	94.23	97.06	100.00	100.00	94.12	94.44	100.00	96.88	91.30	93.33	100.00	100.00	100.00	100.00	100.00	97.06	-2.94	0.366578	0.709176
N	jcn_only_AD	RFX5,SSBP3	chr1	-	chr1:54707183-54707836	chr1:54707183-54707522		chr1:54707523-54707836	chr1:54707836-54707837		0.00	0.00	0.00	NA	5.56	NA	3.64	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	alternative_acceptor	RPLP0	chr12	-	chr12:120636435-120636656;chr12:120636603-120636656;chr12:120636574-120636656	chr12:120636543-120636656		chr12:120636435-120636542;chr12:120636543-120636573;chr12:120636574-120636602	chr12:120636434-120636435;chr12:120636542-120636543;chr12:120636573-120636574		97.50	98.93	97.45	98.38	98.15	98.47	99.21	100.00	99.04	99.11	98.87	99.09	99.32	98.39	98.81	98.92	99.65	99.83	97.20	94.64	98.38	97.83	97.96	97.19	99.34	100.00	97.44	98.40	97.97	98.17	91.95	96.41	98.07	98.47	98.28	98.54	99.07	97.94	-1.12	0.284375	0.709013
N	alternative_acceptor	SLC26A11	chr17	+	chr17:78219056-78219952;chr17:78219056-78219826	chr17:78219056-78219238		chr17:78219239-78219826;chr17:78219827-78219952	chr17:78219826-78219827;chr17:78219952-78219953		10.53	7.69	4.76	8.33	6.25	NA	0.00	0.00	NA	0.00	1.39	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	11.54	NA	12.12	10.26	11.11	NA	9.68	4.17	3.33	1.89	0.00	10.81	12.00	0.00	12.00	9.52	10.47	0.00	10.53	10.53	0.032439	0.560254
K	intron_retention	KLHDC3	chr6	+	chr6:42986710-42986829				chr6:42986709-42986710;chr6:42986829-42986830		5.56	1.12	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.17	0.00	0.00	NA	0.00	0.00	4.44	0.00	1.85	0.00	0.00	8.11	4.35	3.57	3.03	10.00	0.00	0.00	0.00	0.837299	1.000000
N	jcn_only_AA	PRELID1	chr5	+	chr5:176733178-176733385;chr5:176733178-176733363;chr5:176733178-176733372;chr5:176733178-176733455	chr5:176733178-176733422		chr5:176733364-176733372;chr5:176733373-176733385;chr5:176733386-176733422;chr5:176733423-176733455	chr5:176733372-176733373;chr5:176733385-176733386;chr5:176733422-176733423;chr5:176733455-176733456		98.05	96.95	98.06	96.39	96.30	96.94	95.00	96.69	97.17	100.00	99.62	100.00	96.51	100.00	97.07	96.84	96.62	95.77	94.28	95.75	93.57	99.38	94.14	95.42	97.81	100.00	97.62	95.00	96.25	95.09	95.65	96.08	92.99	97.35	97.79	96.94	95.75	97.37	1.62	0.085113	0.663989
N	jcn_only_AA	ANKH	chr5	-	chr5:14711411-14712982;chr5:14711414-14712982	chr5:14711420-14712982		chr5:14711411-14711413;chr5:14711414-14711419	chr5:14711410-14711411;chr5:14711413-14711414		100.00	100.00	100.00	100.00	99.22	100.00	98.36	100.00	NA	100.00	99.13	100.00	98.22	90.91	NA	100.00	99.03	100.00	98.02	100.00	100.00	100.00	99.19	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	97.94	100.00	98.63	100.00	98.29	100.00	1.71	0.684126	0.860177
N	intron_retention		chr22	+	chr22:38073073-38075609				chr22:38073072-38073073;chr22:38075609-38075610		4.00	1.69	11.11	2.82	3.57	2.48	0.00	0.00	0.00	0.00	1.85	0.00	0.00	6.06	0.00	0.00	0.00	0.00	3.05	2.27	2.70	2.63	5.41	2.86	4.86	7.50	7.14	0.00	5.26	0.00	5.26	9.09	2.17	1.85	1.18	2.53	1.93	4.63	2.70	0.380483	1.000000
N	alternative_first_exon	SNU13	chr22	-	chr22:42076369-42078359;chr22:42076369-42483063	chr22:42076369-42084797	chr22:42078360-42078626;chr22:42483064-42483339	chr22:42084798-42084913			71.43	72.00	74.29	63.64	81.82	NA	78.00	72.73	72.73	65.22	78.69	66.67	84.85	NA	62.50	62.12	78.05	74.07	77.27	68.75	63.89	57.14	78.00	61.11	NA	NA	72.73	66.67	74.47	66.67	64.71	60.61	75.00	56.67	71.05	60.00	77.27	70.09	-7.18	0.023210	0.110664
K	cassette	PPP4C	chr16	+	chr16:30093856-30094714	chr16:30093856-30094066;chr16:30094169-30094714		chr16:30094067-30094168			98.89	100.00	96.97	98.08	99.08	100.00	96.34	97.40	97.06	90.14	96.51	95.83	97.20	95.06	93.33	93.38	91.76	89.80	100.00	100.00	97.40	100.00	99.18	100.00	97.44	96.10	95.65	94.67	95.50	95.77	98.82	98.17	94.74	96.67	98.90	95.41	97.32	98.11	0.79	0.937563	0.984560
N	alternative_donor	TCF25	chr16	+	chr16:89972693-89973650	chr16:89973445-89973650		chr16:89972693-89973444	chr16:89972692-89972693		10.00	2.88	10.10	1.53	2.18	1.26	1.00	1.30	1.49	1.56	1.10	0.00	0.88	1.89	4.76	1.05	0.00	0.00	1.73	4.94	2.76	5.36	7.69	3.77	4.05	8.33	7.96	3.03	3.42	1.85	4.95	6.45	2.93	4.85	6.98	8.74	2.30	4.95	2.64	0.089951	0.479204
N	jcn_only_AA	FGR	chr1	-	chr1:27941434-27941944	chr1:27941438-27941944		chr1:27941434-27941437	chr1:27941433-27941434		89.66	100.00	93.33	87.50	89.36	NA	98.01	100.00	100.00	97.07	98.87	97.63	100.00	97.85	100.00	97.56	96.00	100.00	100.00	89.19	86.96	90.78	84.85	94.47	NA	94.44	100.00	95.18	88.35	90.51	92.11	87.50	100.00	91.82	94.93	91.03	100.00	93.28	-6.72	0.023229	0.601799
N	jcn_only_AA		chr11	+	chr11:71946798-71946940	chr11:71946798-71946889		chr11:71946890-71946940	chr11:71946940-71946941		97.92	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.73	NA	100.00	98.67	100.00	93.10	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	SPCS2	chr11	+	chr11:74676163-74687901	chr11:74676163-74680655;chr11:74680745-74687901		chr11:74680656-74680744			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	AP1G2	chr14	-	chr14:24030845-24031496	chr14:24030845-24031170;chr14:24031276-24031496		chr14:24031171-24031275			73.33	100.00	75.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.24	94.74	NA	NA	NA	81.82	83.33	81.25	NA	81.82	NA	76.47	76.00	80.77	NA	92.86	NA	75.00	86.96	NA	NA	76.92	80.00	100.00	79.66	-20.34	0.289309	0.709176
N	alternative_donor	HMGB2	chr4	-	chr4:174254821-174255422;chr4:174254821-174255007	chr4:174254821-174255396		chr4:174255008-174255396;chr4:174255397-174255422	chr4:174255396-174255397;chr4:174255422-174255423		0.00	0.00	9.09	NA	NA	NA	3.51	5.00	3.57	7.14	3.64	NA	6.58	5.00	7.50	9.52	4.55	NA	NA	8.33	NA	NA	NA	NA	0.00	15.38	0.00	NA	0.00	NA	9.09	0.00	NA	NA	0.00	NA	1.75	6.67	4.91	0.118570	0.530980
N	jcn_only_AD	MYO1F	chr19	-	chr19:8615241-8615445	chr19:8615241-8615439		chr19:8615440-8615445	chr19:8615445-8615446		2.83	6.19	2.97	NA	0.00	NA	0.00	0.78	2.30	5.56	3.33	0.00	2.65	0.75	0.00	0.00	1.48	0.00	0.00	3.91	1.79	3.45	0.00	0.00	0.00	3.42	2.79	0.00	2.97	0.00	6.35	4.15	0.00	5.36	2.31	0.00	0.00	3.12	3.12	0.282930	0.657607
K	intron_retention	AP003419.11	chr11	-	chr11:67120549-67120773				chr11:67120548-67120549;chr11:67120773-67120774		21.43	19.42	37.68	33.33	27.27	28.00	1.12	5.80	5.00	2.94	7.41	0.00	5.32	7.46	5.15	6.25	8.20	15.38	17.91	25.71	12.72	21.43	26.32	41.67	27.66	17.74	22.33	9.68	18.39	26.09	18.00	26.51	16.13	28.57	30.56	23.33	17.02	17.87	0.85	0.975306	1.000000
N	jcn_only_AD		chr1	-	chr1:156233362-156234104;chr1:156233362-156236075	chr1:156233362-156235571		chr1:156234105-156235571;chr1:156235572-156236075	chr1:156235571-156235572;chr1:156236075-156236076		93.55	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	NA	100.00	NA	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	97.44	100.00	100.00	100.00	100.00	0.00	0.373901	0.657607
N	alternative_acceptor	CALM3	chr19	+	chr19:47109115-47109372;chr19:47109115-47111453;chr19:47109115-47111455	chr19:47109115-47111461		chr19:47109373-47111453;chr19:47111454-47111455;chr19:47111456-47111461	chr19:47111453-47111454;chr19:47111455-47111456;chr19:47111461-47111462		0.00	0.00	0.00	3.75	0.00	3.95	0.00	0.00	4.17	0.00	0.00	6.62	7.04	2.13	0.00	0.00	0.00	0.00	6.60	0.00	5.22	0.00	3.17	0.00	0.00	8.54	0.00	0.00	0.00	0.00	0.00	4.60	9.04	0.00	0.00	0.00	3.30	0.00	-3.30	0.388952	0.709013
K	intron_retention	NFYC	chr1	+	chr1:41232376-41235027				chr1:41232375-41232376;chr1:41235027-41235028		2.78	0.00	6.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	4.17	0.00	4.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	2.56	0.00	5.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	ACAT2	chr6	+	chr6:160199313-160199690				chr6:160199312-160199313;chr6:160199690-160199691		7.89	11.76	11.90	5.97	16.67	4.27	2.63	NA	10.00	3.60	4.00	2.25	3.28	NA	16.67	7.50	12.20	7.14	11.11	6.90	7.69	14.29	22.22	14.89	7.89	10.00	8.82	8.00	14.29	10.53	5.77	8.33	15.52	12.00	9.68	7.32	9.50	7.39	-2.11	0.743770	1.000000
K	intron_retention	PQLC2	chr1	+	chr1:19653118-19653720				chr1:19653117-19653118;chr1:19653720-19653721		15.79	9.84	14.71	0.00	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.00	7.69	0.00	10.00	12.31	13.64	0.00	0.00	8.11	7.69	2.17	8.33	5.26	12.50	0.00	6.25	11.54	8.70	0.00	2.63	2.63	0.922124	1.000000
N	alternative_acceptor		chr19	+	chr19:17263517-17264815	chr19:17263517-17264776		chr19:17264777-17264815	chr19:17264815-17264816		92.31	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	NA	NA	97.30	100.00	95.65	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AA	PNKP	chr19	-	chr19:50369786-50370310;chr19:50369762-50370310	chr19:50369703-50370310		chr19:50369703-50369761;chr19:50369762-50369785	chr19:50369702-50369703;chr19:50369761-50369762		85.71	100.00	77.27	NA	NA	NA	94.12	NA	75.00	NA	100.00	NA	95.45	NA	81.82	NA	100.00	NA	NA	91.67	100.00	NA	77.78	NA	100.00	90.91	94.74	NA	NA	NA	75.00	88.24	100.00	100.00	100.00	86.67	100.00	88.31	-11.69	0.045130	0.663989
K	intron_retention	SMIM12	chr1	-	chr1:35321584-35325277				chr1:35321583-35321584;chr1:35325277-35325278		0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	2.33	2.00	2.08	0.00	2.86	0.00	2.22	3.03	2.44	6.06	0.00	0.00	0.00	0.00	4.00	0.00	NA	0.00	0.00	3.33	5.00	0.00	8.33	3.70	5.88	4.00	0.00	2.56	2.63	0.00	-2.63	0.899697	1.000000
K	jcn_only_AA	TP53I13	chr17	+	chr17:27898738-27898874	chr17:27898738-27898849		chr17:27898850-27898874	chr17:27898874-27898875		0.00	0.00	0.00	0.00	6.06	0.00	3.70	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	CD300A	chr17	+	chr17:72477466-72480632;chr17:72477466-72480139	chr17:72477466-72477864;chr17:72477973-72480139,chr17:72477973-72480632		chr17:72477865-72477972			75.57	80.74	69.77	NA	58.82	NA	93.10	91.23	87.18	92.86	91.30	85.71	91.92	87.50	91.43	83.87	87.78	78.57	88.57	80.70	76.92	NA	73.81	NA	66.67	79.17	75.34	NA	77.36	NA	80.00	83.33	79.41	80.00	66.67	NA	84.66	80.35	-4.31	0.830792	0.942757
K	intron_retention	SH3BP1	chr22	+	chr22:38051323-38051932				chr22:38051322-38051323;chr22:38051932-38051933		86.96	87.82	90.48	83.33	91.67	73.68	90.32	90.91	76.92	NA	90.91	NA	87.18	89.19	92.86	85.71	86.49	NA	92.93	88.37	90.48	NA	92.86	NA	90.77	87.76	87.80	NA	96.23	NA	84.62	93.33	92.70	NA	94.12	NA	90.54	88.06	-2.48	0.249728	1.000000
N	jcn_only_AA	ACO2	chr22	+	chr22:41911922-41913600;chr22:41911922-41913300	chr22:41911922-41913530		chr22:41913301-41913530;chr22:41913531-41913600	chr22:41913530-41913531;chr22:41913600-41913601		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	99.06	99.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	91.43	97.67	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	FCGRT	chr19	+	chr19:50016501-50016643				chr19:50016500-50016501;chr19:50016643-50016644		94.37	95.81	97.62	88.89	94.32	95.00	88.55	90.32	69.23	70.00	73.86	65.88	89.07	89.66	83.33	84.38	67.68	68.12	91.23	90.32	100.00	100.00	91.81	86.67	97.71	92.50	94.87	85.90	88.76	90.62	92.31	95.45	90.00	91.55	89.53	88.72	90.62	91.31	0.70	0.825733	1.000000
K	intron_retention	APH1A	chr1	-	chr1:150238595-150238932				chr1:150238594-150238595;chr1:150238932-150238933		71.43	71.01	64.24	55.88	69.88	51.16	68.55	69.11	63.31	74.61	80.74	72.43	68.06	75.94	71.21	61.61	80.13	70.94	62.16	75.51	60.18	59.48	71.62	67.97	74.60	71.79	70.42	65.65	67.18	57.22	64.58	70.39	61.45	69.23	74.05	62.82	68.31	71.61	3.31	0.991476	1.000000
K	cassette	SRRT	chr7	+	chr7:100485765-100486094	chr7:100485765-100485877;chr7:100486005-100486094		chr7:100485878-100486004			97.06	100.00	100.00	97.06	96.86	97.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.18	93.33	100.00	97.42	100.00	99.16	100.00	95.51	100.00	97.10	100.00	100.00	100.00	100.00	95.74	97.92	100.00	97.56	98.15	98.55	96.61	98.78	100.00	1.22	0.560659	0.824117
K	intron_retention	LST1	chr6	+	chr6:31555744-31556294				chr6:31555743-31555744;chr6:31556294-31556295		11.11	16.21	33.33	2.04	11.70	4.20	2.53	0.00	4.35	0.00	0.00	2.33	3.33	0.00	7.41	1.31	1.63	1.01	15.79	12.00	14.47	2.70	8.45	3.45	14.46	5.88	18.75	3.23	10.19	6.42	6.25	13.04	14.60	1.75	11.54	3.41	14.53	6.06	-8.47	0.222684	1.000000
N	jcn_only_AD	HSCB	chr22	+	chr22:29138369-29139869;chr22:29138717-29139869;chr22:29138926-29139869;chr22:29138521-29139869	chr22:29138320-29139869		chr22:29138320-29138368;chr22:29138369-29138520;chr22:29138521-29138716;chr22:29138717-29138925	chr22:29138319-29138320;chr22:29138368-29138369;chr22:29138520-29138521;chr22:29138716-29138717		38.89	100.00	54.55	NA	NA	NA	75.00	33.33	53.33	91.67	92.86	95.83	73.68	33.33	63.16	NA	75.00	90.00	25.00	25.93	29.63	70.00	73.33	54.55	NA	37.50	42.86	90.91	88.24	59.26	26.32	50.00	75.00	NA	NA	77.78	75.00	33.33	-41.67	0.037063	0.460147
K	intron_retention	PSME2	chr14	-	chr14:24612881-24613183				chr14:24612880-24612881;chr14:24613183-24613184		3.80	1.67	3.51	6.83	3.59	6.30	0.00	0.20	0.29	0.49	0.00	0.99	0.00	0.46	1.23	1.83	0.72	1.32	2.06	2.56	1.75	10.83	4.24	12.99	2.06	2.47	3.87	5.63	3.57	7.11	3.28	3.49	1.97	9.32	2.88	9.07	1.82	2.52	0.70	0.482800	1.000000
K	intron_retention	APOE	chr19	+	chr19:45409181-45409858				chr19:45409180-45409181;chr19:45409858-45409859		9.09	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.78	0.00	3.08	0.00	2.70	0.00	1.89	0.00	0.00	0.00	0.00	3.45	5.13	0.00	0.00	0.00	2.70	0.00	-2.70	0.481521	1.000000
N	alternative_acceptor	WDFY4	chr10	+	chr10:50189524-50190553;chr10:50189524-50190764	chr10:50189524-50190734		chr10:50190554-50190734;chr10:50190735-50190764	chr10:50190734-50190735;chr10:50190764-50190765		0.00	8.42	0.00	6.90	0.00	0.00	5.13	4.76	9.09	0.00	6.67	10.53	0.00	0.00	0.00	0.00	7.41	12.50	7.79	0.00	10.13	0.00	10.81	0.00	5.17	5.56	5.41	7.41	8.70	0.00	9.52	9.09	10.71	0.00	5.41	0.00	6.48	2.38	-4.10	0.220145	0.671511
K	coord_cassette	NAP1L1	chr12	-	chr12:76454060-76467982	chr12:76454060-76461150;chr12:76461254-76462688;chr12:76462775-76467982		chr12:76461151-76461253;chr12:76462689-76462774			84.48	97.83	91.04	93.75	100.00	100.00	93.46	92.05	94.12	96.50	96.90	96.58	93.84	92.11	91.84	97.52	97.47	97.83	90.48	83.93	88.33	94.50	96.32	94.21	NA	86.57	92.50	98.18	98.59	97.47	80.85	93.67	100.00	94.89	95.39	92.20	93.84	85.53	-8.31	0.008425	0.643829
K	jcn_only_AA	SELM	chr22	-	chr22:31501952-31503362;chr22:31502033-31503362;chr22:31502150-31503362	chr22:31502102-31503362		chr22:31501952-31502032;chr22:31502033-31502101;chr22:31502102-31502149	chr22:31501951-31501952;chr22:31502032-31502033;chr22:31502101-31502102		2.44	0.00	3.67	0.00	2.27	0.00	NA	7.14	2.83	NA	NA	NA	NA	6.67	3.77	NA	NA	NA	0.00	3.90	3.20	0.00	3.70	0.00	0.00	2.00	3.33	NA	0.00	NA	4.94	4.22	2.50	NA	4.55	14.29	0.00	4.42	4.42	0.006739	0.450187
N	alternative_donor	CHMP4A	chr14	-	chr14:24681036-24681971;chr14:24681036-24681756;chr14:24681036-24682229;chr14:24681036-24683199	chr14:24681036-24682614		chr14:24681757-24681971;chr14:24681972-24682229;chr14:24682230-24682614;chr14:24682615-24683199	chr14:24681971-24681972;chr14:24682229-24682230;chr14:24682614-24682615;chr14:24683199-24683200		90.91	95.00	68.42	NA	81.82	NA	100.00	100.00	90.48	100.00	100.00	100.00	100.00	100.00	94.44	NA	100.00	100.00	85.71	90.91	82.35	NA	78.26	NA	NA	76.92	82.35	90.91	81.82	91.67	90.00	72.22	81.82	NA	83.33	75.00	95.00	90.91	-4.09	0.841530	0.955392
N	jcn_only_AA	MYO18A	chr17	-	chr17:27401933-27409333	chr17:27408019-27409333		chr17:27401933-27408018	chr17:27401932-27401933		0.00	0.00	0.00	NA	0.00	NA	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.76	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.178124	0.663989
K	intron_retention	CCDC107	chr9	+	chr9:35660645-35660770				chr9:35660644-35660645;chr9:35660770-35660771		76.67	72.22	78.95	86.67	90.16	100.00	84.62	81.82	NA	NA	73.33	NA	NA	NA	NA	NA	88.89	NA	76.92	73.91	64.86	57.14	92.50	NA	72.15	65.00	82.61	91.67	78.57	90.00	67.65	83.87	72.83	85.71	86.96	75.00	72.83	73.91	1.08	0.835067	1.000000
K	intron_retention		chr11	+	chr11:72537869-72538232				chr11:72537868-72537869;chr11:72538232-72538233		7.89	4.81	8.33	NA	6.98	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	2.70	NA	6.12	NA	9.26	0.00	6.52	NA	2.50	NA	14.29	9.62	4.26	6.67	13.89	16.67	2.13	3.94	1.81	0.769999	1.000000
N	jcn_only_AD	IL4I1	chr19	-	chr19:50398438-50399140;chr19:50398438-50399071	chr19:50398438-50399182		chr19:50399072-50399140;chr19:50399141-50399182	chr19:50399140-50399141;chr19:50399182-50399183		4.85	7.69	3.98	6.25	2.86	1.54	3.64	4.09	2.77	4.24	3.06	2.59	0.00	3.90	3.40	5.17	2.72	3.84	0.00	2.81	2.29	2.44	3.56	5.16	0.00	3.14	4.09	0.00	5.41	2.65	3.46	2.97	0.00	2.91	4.98	5.14	0.00	3.68	3.68	0.226494	0.657607
N	alternative_acceptor		chr11	+	chr11:6631267-6631386	chr11:6631267-6631378		chr11:6631379-6631386	chr11:6631386-6631387		98.20	98.37	96.30	100.00	98.27	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.65	92.55	96.20	100.00	97.46	100.00	96.79	100.00	98.69	100.00	100.00	100.00	88.79	90.62	86.62	97.78	94.78	100.00	97.58	99.10	1.52	0.774785	0.916888
N	intron_retention		chr11	+	chr11:67818132-67818220				chr11:67818131-67818132;chr11:67818220-67818221		72.34	83.15	86.11	90.24	91.04	87.80	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	82.09	83.78	89.74	88.24	89.74	NA	83.81	84.85	88.89	86.67	87.10	100.00	81.01	88.24	83.97	81.25	100.00	85.71	83.48	84.31	0.83	0.323580	1.000000
K	jcn_only_AA	ARHGAP4	chrX	-	chrX:153178971-153179231	chrX:153179055-153179231		chrX:153178971-153179054	chrX:153178970-153178971		95.16	96.85	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.28	100.00	95.52	97.57	100.00	92.31	98.44	100.00	97.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	95.18	94.74	98.78	100.00	1.22	0.958300	0.984403
K	intron_retention	PLAUR	chr19	-	chr19:44153062-44156415				chr19:44153061-44153062;chr19:44156415-44156416		87.97	85.88	89.58	87.00	87.03	86.27	91.67	87.83	86.65	90.50	90.56	91.28	86.99	88.73	90.25	89.29	91.32	91.93	88.53	88.03	88.82	87.73	90.42	85.96	81.08	88.16	88.44	87.38	89.61	86.78	87.63	87.25	87.46	88.09	90.00	88.87	87.22	88.00	0.78	0.698594	1.000000
N	alternative_acceptor	MYO9B	chr19	+	chr19:17322584-17322868;chr19:17322584-17325268;chr19:17322584-17322703	chr19:17322584-17322809		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		2.36	1.31	2.35	2.80	1.53	2.47	3.85	4.44	8.33	7.04	5.41	8.70	4.95	9.76	4.55	4.95	6.72	7.84	8.42	2.41	3.94	2.68	0.89	1.92	1.71	1.74	2.88	2.59	1.02	9.63	2.14	2.70	2.49	1.95	1.84	1.41	3.17	2.38	-0.79	0.990585	0.996099
N	jcn_only_AA		chr21	+	chr21:45810909-45811161;chr21:45810909-45811315	chr21:45810909-45811154		chr21:45811155-45811161;chr21:45811162-45811315	chr21:45811161-45811162;chr21:45811315-45811316		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	DDIT3	chr12	-	chr12:57910964-57911488	chr12:57910964-57911051;chr12:57911326-57911488		chr12:57911052-57911325			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	91.04	100.00	100.00	100.00	100.00	100.00	0.00	0.459968	0.758080
K	jcn_only_AA	STIP1	chr11	+	chr11:63961803-63970960	chr11:63961803-63961950					87.23	63.64	94.74	NA	71.43	NA	92.00	90.48	88.00	93.94	91.12	100.00	94.00	87.50	93.85	94.57	89.60	100.00	NA	100.00	100.00	93.33	93.15	100.00	NA	96.67	90.91	100.00	89.80	91.30	100.00	100.00	100.00	100.00	93.94	92.11	93.00	93.58	0.58	0.506875	0.758797
K	intron_retention	DENND4B	chr1	-	chr1:153905507-153905672				chr1:153905506-153905507;chr1:153905672-153905673		7.69	14.29	10.61	NA	0.00	NA	1.61	0.00	0.00	0.00	0.00	0.00	1.20	1.75	4.76	0.00	1.35	NA	NA	4.44	NA	9.09	9.68	11.11	16.67	16.28	8.77	2.38	5.00	11.11	9.52	7.41	NA	6.82	6.67	9.68	7.95	6.07	-1.88	0.380492	1.000000
K	intron_retention	KRR1	chr12	-	chr12:75893732-75895502				chr12:75893731-75893732;chr12:75895502-75895503		10.00	58.33	2.86	43.24	46.51	60.56	89.00	36.00	9.52	76.32	75.00	78.66	86.14	20.00	0.00	61.90	70.73	66.67	46.88	0.00	24.14	41.03	45.45	38.46	80.65	15.00	0.00	48.89	60.47	47.62	8.00	0.00	44.74	41.94	44.00	49.37	69.49	12.50	-56.99	0.204138	1.000000
K	jcn_only_AA	RPL8	chr8	-	chr8:146017258-146017376;chr8:146017300-146017376	chr8:146016696-146017376					11.11	12.75	5.05	11.36	10.44	20.17	7.31	6.06	9.30	14.13	13.20	12.62	7.84	7.62	9.09	8.36	13.81	15.91	15.58	6.25	8.89	5.82	4.53	6.37	21.56	6.10	6.96	6.46	5.98	6.64	7.43	5.95	13.27	7.16	6.60	5.92	13.01	6.84	-6.17	0.047596	0.663989
K	alternative_acceptor	TAF1D	chr11	-	chr11:93465458-93466252	chr11:93465480-93466252		chr11:93465458-93465479	chr11:93465457-93465458		9.09	0.00	9.09	1.82	4.69	1.72	0.00	NA	10.00	6.98	8.11	7.69	4.00	NA	0.00	2.56	6.12	5.00	1.72	4.00	7.50	3.39	4.17	7.14	0.00	10.00	0.00	0.00	2.17	2.86	2.17	4.23	3.53	3.51	2.63	4.00	0.86	6.54	5.68	0.081649	0.585944
N	coord_cassette	CD40	chr20	+	chr20:44751396-44756776	chr20:44751396-44751764;chr20:44751859-44755278;chr20:44755341-44756776		chr20:44751765-44751858;chr20:44755279-44755340			92.68	100.00	93.10	100.00	100.00	98.52	100.00	99.35	98.53	99.25	100.00	99.43	100.00	100.00	98.11	100.00	100.00	99.13	100.00	93.85	95.24	97.64	96.30	98.70	NA	96.70	96.77	98.76	100.00	99.49	93.17	86.47	100.00	100.00	100.00	96.99	100.00	95.28	-4.72	0.027189	0.643829
K	cassette	UTP6	chr17	-	chr17:30192458-30195064	chr17:30192458-30193673;chr17:30193735-30195064		chr17:30193674-30193734			0.00	3.45	5.13	5.26	3.12	2.27	5.00	9.52	3.33	0.00	4.84	4.17	2.44	0.00	7.14	4.65	5.17	0.00	3.70	0.00	3.77	9.76	5.45	3.03	6.67	0.00	3.57	5.41	3.64	12.82	3.33	2.04	5.56	1.75	4.48	4.65	4.35	0.00	-4.35	0.214659	0.709176
N	cassette	MGRN1	chr16	+	chr16:4715153-4721391	chr16:4715153-4718265;chr16:4718314-4721391		chr16:4718266-4718313			96.43	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	89.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.22	100.00	98.28	100.00	100.00	0.00	0.572139	0.830407
N	cassette	C17orf62	chr17	-	chr17:80403837-80405455;chr17:80403837-80408575	chr17:80403837-80404498;chr17:80404569-80405455,chr17:80404569-80408575		chr17:80404499-80404568			93.27	100.00	95.24	NA	95.00	NA	100.00	99.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	90.24	NA	96.77	100.00	100.00	100.00	92.63	100.00	96.00	100.00	100.00	93.51	100.00	100.00	100.00	100.00	100.00	99.50	-0.50	0.162782	0.709176
K	intron_retention	GMPR2	chr14	+	chr14:24708010-24708163				chr14:24708009-24708010;chr14:24708163-24708164		90.91	91.78	92.16	88.24	90.54	100.00	91.67	90.48	84.78	94.29	90.91	90.62	91.67	84.78	87.80	95.24	90.28	90.91	87.67	90.48	90.00	100.00	89.09	100.00	83.13	86.27	89.33	100.00	88.31	93.33	90.70	88.57	82.89	94.74	85.37	96.30	89.67	90.48	0.81	0.940886	1.000000
N	cassette	SLC15A3	chr11	-	chr11:60707111-60709466;chr11:60707111-60711160;chr11:60707111-60709506	chr11:60707111-60708593;chr11:60708763-60711160,chr11:60708763-60709506,chr11:60708763-60709466		chr11:60708594-60708762			65.20	48.34	50.00	45.54	37.36	46.33	73.54	85.61	78.87	57.93	59.02	66.52	76.14	85.04	75.93	65.04	58.75	65.07	46.86	61.20	57.86	46.15	43.76	51.21	57.53	77.33	52.63	52.57	56.17	60.82	63.94	39.06	47.87	48.10	50.29	59.42	52.94	71.27	18.33	0.065339	0.621473
K	intron_retention	RP11-44M6.7,SAP25	chr7	-	chr7:100170375-100170482				chr7:100170374-100170375;chr7:100170482-100170483		7.69	1.81	10.00	0.00	17.14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4.69	14.29	5.88	NA	6.45	NA	7.69	20.00	6.12	18.18	18.75	NA	8.82	4.17	5.65	NA	17.65	0.00	5.17	11.55	6.38	0.110653	1.000000
N	cassette	IFI44	chr1	+	chr1:79125169-79129449;chr1:79125169-79128388	chr1:79125169-79126238;chr1:79126340-79129449,chr1:79126340-79128388		chr1:79126239-79126339			77.78	76.92	82.05	70.37	83.33	80.62	85.71	89.29	84.00	83.87	86.36	93.56	83.33	85.51	86.67	88.24	93.55	94.44	76.67	80.00	81.25	93.10	90.48	87.97	54.17	80.04	89.47	88.44	94.44	88.58	56.74	66.86	69.23	74.12	87.50	78.66	76.80	80.02	3.23	0.567680	0.828945
N	jcn_only_AA		chr2	+	chr2:114728331-114759467;chr2:114728331-114757611;chr2:114728331-114785417;chr2:114728331-114745047	chr2:114728331-114764595		chr2:114745048-114757611;chr2:114757612-114759467;chr2:114759468-114764595;chr2:114764596-114785417	chr2:114757611-114757612;chr2:114759467-114759468;chr2:114764595-114764596;chr2:114785417-114785418		90.91	100.00	91.18	86.36	100.00	98.68	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	98.36	100.00	100.00	100.00	96.77	92.86	100.00	100.00	100.00	NA	100.00	NA	91.43	89.83	96.23	85.71	86.11	83.33	99.18	95.72	-3.47	0.324858	0.663989
N	coord_cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28989366-28994177	chr16:28989366-28990475;chr16:28990628-28990725;chr16:28990793-28992790;chr16:28992937-28994177		chr16:28990476-28990627;chr16:28990726-28990792;chr16:28992791-28992936		chr16:28989229-28989365;chr16:28994178-28994243	100.00	89.29	100.00	90.91	88.46	NA	98.15	100.00	100.00	97.62	96.00	100.00	100.00	100.00	96.30	98.08	97.37	100.00	88.24	94.44	100.00	90.62	95.92	100.00	100.00	100.00	94.74	100.00	95.00	90.91	92.31	87.50	85.00	95.12	100.00	94.59	93.72	100.00	6.28	0.198239	0.643829
N	cassette	ARSA	chr22	-	chr22:51065171-51065593;chr22:51065189-51065593	chr22:51065171-51065261,chr22:51065189-51065261;chr22:51065481-51065593		chr22:51065262-51065480			90.14	77.78	83.93	92.31	82.09	84.00	99.01	100.00	97.78	98.51	98.89	97.37	97.22	98.61	98.63	97.44	100.00	100.00	86.49	91.38	96.49	92.11	93.33	92.68	87.04	95.74	97.56	94.23	100.00	100.00	94.74	93.75	93.18	91.11	92.00	94.19	90.11	95.24	5.13	0.207551	0.709176
K	intron_retention		chr6	+	chr6:36989381-36990014				chr6:36989380-36989381;chr6:36990014-36990015		9.41	0.00	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	NA	0.00	5.13	NA	4.21	NA	NA	4.55	0.00	NA	7.69	NA	5.88	7.14	2.63	3.57	0.00	0.00	8.70	0.00	7.89	0.00	3.89	3.89	0.104574	1.000000
K	intron_retention	MED19	chr11	-	chr11:57471579-57471773				chr11:57471578-57471579;chr11:57471773-57471774		5.88	18.75	9.09	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	3.45	6.25	14.29	15.79	0.00	0.00	0.00	0.00	0.00	0.00	0.664145	1.000000
K	alternative_donor	AD000671.6,U2AF1L4	chr19	-	chr19:36234806-36234970	chr19:36234806-36234912		chr19:36234913-36234970	chr19:36234970-36234971		13.33	8.45	10.34	11.54	4.05	5.56	6.25	NA	13.64	NA	NA	NA	5.88	7.69	4.76	NA	NA	NA	7.14	15.79	7.69	18.18	10.53	5.26	5.56	NA	4.35	12.50	5.56	5.26	10.00	8.57	9.09	7.41	8.33	7.69	6.70	11.66	4.97	0.075145	0.462930
K	intron_retention	RANGAP1	chr22	-	chr22:41645822-41647010				chr22:41645821-41645822;chr22:41647010-41647011		4.35	13.95	3.03	NA	6.90	7.69	1.79	0.00	0.00	0.00	2.50	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	0.00	5.00	0.00	NA	7.69	3.70	8.57	4.00	0.00	4.55	0.00	3.23	6.67	6.98	0.69	0.00	-0.69	0.753052	1.000000
N	jcn_only_AA	STRN4	chr19	-	chr19:47228637-47228729	chr19:47228657-47228729		chr19:47228637-47228656	chr19:47228636-47228637		8.33	0.00	4.17	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	NA	6.67	0.00	0.00	5.88	0.00	0.00	2.78	2.22	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.56	9.43	0.00	1.39	1.39	0.107960	0.663989
K	intron_retention	SLIRP	chr14	+	chr14:78182223-78183838				chr14:78182222-78182223;chr14:78183838-78183839		0.00	0.00	8.62	1.27	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.70	4.00	1.68	4.35	1.35	0.00	1.57	0.00	2.00	0.00	0.00	0.00	4.55	3.92	3.01	2.08	2.90	1.85	0.79	0.00	-0.79	0.775569	1.000000
N	intron_retention		chr1	+	chr1:22963196-22965325				chr1:22963195-22963196;chr1:22965325-22965326		5.00	10.00	NA	NA	NA	NA	0.00	0.00	NA	NA	NA	0.00	5.26	3.70	NA	0.00	0.00	NA	14.29	0.00	NA	NA	NA	NA	NA	21.43	8.33	NA	6.25	NA	NA	NA	0.00	NA	0.00	NA	5.26	3.70	-1.56	0.735122	1.000000
N	cassette	FNBP1	chr9	-	chr9:132671279-132686122;chr9:132671279-132687238	chr9:132671279-132678244;chr9:132678260-132687238,chr9:132678260-132686122		chr9:132678245-132678259			2.86	4.17	3.39	0.00	0.00	NA	3.73	3.35	0.74	1.41	1.67	5.24	3.90	1.75	1.04	1.12	3.09	2.08	0.00	0.00	5.00	0.00	6.06	3.12	NA	1.18	0.00	7.69	7.69	5.26	3.03	2.00	14.29	1.96	2.17	2.31	3.90	2.30	-1.60	0.257229	0.709176
N	intron_retention		chr2	+	chr2:114727181-114728205				chr2:114727180-114727181;chr2:114728205-114728206		11.76	33.33	13.04	9.52	8.70	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12.12	8.70	14.29	5.88	10.00	7.14	21.43	5.26	3.45	NA	NA	NA	18.18	10.53	0.00	15.79	12.00	14.71	16.77	10.23	-6.54	0.557211	1.000000
N	jcn_only_AA	COMMD7	chr20	-	chr20:31319448-31331113;chr20:31315947-31331113	chr20:31315950-31331113		chr20:31315947-31315949;chr20:31315950-31319447	chr20:31315946-31315947;chr20:31315949-31315950		90.20	100.00	95.16	NA	96.67	NA	89.16	90.74	93.18	93.48	84.71	89.80	86.27	89.83	91.11	87.30	91.25	88.89	81.82	96.88	89.47	87.50	96.67	89.19	NA	88.89	93.18	94.29	90.38	94.74	89.47	96.23	91.67	84.85	96.00	91.67	89.16	90.02	0.86	0.723670	0.877224
K	cassette	DEDD2	chr19	-	chr19:42719405-42721783;chr19:42719405-42724225	chr19:42719405-42720831;chr19:42721198-42721783,chr19:42721198-42724225		chr19:42720832-42721197			43.48	50.00	48.08	NA	58.82	NA	82.86	94.34	73.81	70.00	70.59	NA	83.87	84.44	78.12	84.62	72.50	NA	NA	52.94	75.00	66.67	61.70	50.00	NA	76.00	58.33	NA	73.08	NA	57.14	44.44	50.00	63.16	57.89	63.64	66.43	66.57	0.14	0.916295	0.977920
N	alternative_donor	RP11-437B10.1	chr15	+	chr15:93435303-93444396	chr15:93444055-93444396		chr15:93435303-93444054	chr15:93435302-93435303		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	NA	NA	NA	86.67	NA	NA	NA	100.00	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657675
N	alternative_donor	SRSF2	chr17	-	chr17:74730645-74731142	chr17:74730645-74730985		chr17:74730986-74731142	chr17:74731142-74731143		64.86	64.44	70.97	68.75	52.31	83.93	81.82	69.23	66.00	76.86	75.95	87.27	84.42	60.47	72.46	89.36	81.25	90.57	50.00	49.30	41.30	65.49	54.70	68.75	50.00	53.97	61.11	73.77	56.41	64.29	42.27	49.49	55.88	75.61	78.10	74.15	60.16	57.22	-2.94	0.331654	0.650093
N	alternative_donor	CFLAR	chr2	+	chr2:202000831-202005079	chr2:202003688-202005079		chr2:202000831-202003687	chr2:202000830-202000831		18.75	13.33	17.63	16.39	17.86	16.50	12.50	22.15	27.67	17.41	18.18	15.26	11.94	27.89	27.00	20.86	17.35	16.53	8.70	13.99	10.34	15.02	17.31	15.94	NA	22.85	21.19	26.98	27.59	20.56	16.61	20.83	8.33	19.88	15.32	20.33	11.94	20.45	8.51	0.003968	0.148514
K	alternative_first_exon	TMUB1	chr7	-	chr7:150779681-150780158,chr7:150779681-150780169;chr7:150779681-150780424;chr7:150779681-150779850	chr7:150779681-150780520	chr7:150780425-150780487;chr7:150779851-150780178	chr7:150780521-150780633			21.74	33.33	45.16	NA	47.37	NA	60.00	60.61	70.37	36.36	33.33	NA	71.43	58.33	59.26	58.82	46.67	NA	41.67	28.57	41.94	25.00	43.48	NA	42.86	42.86	44.00	30.77	47.83	NA	30.77	31.25	38.46	23.53	25.00	33.33	42.27	36.81	-5.45	0.421194	0.568167
N	jcn_only_AD	IGFLR1	chr19	-	chr19:36232125-36233296;chr19:36232125-36233290;chr19:36232125-36233167	chr19:36232125-36232383		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	5.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.483713	0.729804
N	alternative_last_exon		chrX	+	chrX:102631542-102632437	chrX:102631542-102631955	chrX:102632438-102633005	chrX:102631956-102632034			97.30	98.70	95.45	93.75	97.44	94.12	100.00	NA	92.86	100.00	96.97	100.00	100.00	92.31	95.83	98.00	100.00	100.00	93.48	94.74	97.06	96.00	98.48	96.43	98.08	96.15	97.92	96.88	98.11	97.30	NA	NA	97.73	95.45	96.15	92.68	98.39	95.44	-2.95	0.088369	0.301591
K	intron_retention		chr3	+	chr3:52537919-52538043				chr3:52537918-52537919;chr3:52538043-52538044		0.00	5.41	0.00	NA	0.00	0.00	0.12	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	0.00	0.14	0.00	6.67	0.00	NA	0.00	0.00	0.00	3.40	0.00	0.00	0.00	1.29	0.00	0.00	0.00	5.88	0.00	0.00	0.00	4.41	0.00	-4.41	0.093139	1.000000
K	intron_retention	PPP1R37	chr19	+	chr19:45648519-45648610				chr19:45648518-45648519;chr19:45648610-45648611		8.33	24.00	15.79	NA	11.11	NA	2.56	0.00	NA	0.00	0.00	NA	0.00	0.00	6.67	3.57	7.50	NA	5.00	11.11	0.00	0.00	15.52	NA	0.00	8.33	4.00	8.33	8.11	7.69	22.22	17.14	10.00	7.69	2.86	9.52	3.78	8.33	4.55	0.951905	1.000000
K	jcn_only_AA	TADA3	chr3	-	chr3:9833170-9833899;chr3:9833066-9833899	chr3:9833178-9833899		chr3:9833066-9833169;chr3:9833170-9833177	chr3:9833065-9833066;chr3:9833169-9833170		98.08	100.00	96.55	NA	100.00	NA	100.00	96.36	94.59	100.00	95.08	100.00	98.11	100.00	100.00	100.00	94.23	84.62	NA	100.00	93.33	100.00	100.00	100.00	NA	100.00	97.30	100.00	94.74	100.00	100.00	93.33	100.00	96.00	100.00	93.10	100.00	100.00	0.00	0.578765	0.802919
N	cassette	HNRNPD	chr4	-	chr4:83280793-83294598;chr4:83279974-83294598	chr4:83280793-83292680,chr4:83279974-83292680;chr4:83292738-83294598		chr4:83292681-83292737			76.92	100.00	76.60	100.00	83.33	NA	84.87	80.65	81.05	89.13	91.67	92.41	84.48	85.00	85.61	92.55	89.50	92.31	76.92	82.22	78.38	90.20	82.76	84.13	NA	72.73	76.56	93.10	86.30	87.88	72.00	76.74	88.24	92.06	90.32	83.75	84.87	78.78	-6.09	0.089305	0.652861
K	alternative_acceptor	C7orf43	chr7	-	chr7:99753449-99754008;chr7:99753555-99754008	chr7:99753543-99754008		chr7:99753449-99753542;chr7:99753543-99753554	chr7:99753448-99753449;chr7:99753542-99753543		11.54	9.09	9.09	NA	4.55	NA	0.00	0.00	NA	NA	4.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	5.00	4.17	NA	5.26	NA	NA	5.26	3.57	NA	5.00	NA	5.26	3.12	20.00	9.09	4.76	20.00	4.54	5.13	0.58	0.615621	0.854035
N	jcn_only_AA	LIMD2	chr17	-	chr17:61776299-61776616;chr17:61767958-61776616;chr17:61776430-61776616	chr17:61776474-61776616					0.00	3.85	3.70	NA	0.00	NA	1.61	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	10.00	0.00	0.00	2.38	NA	NA	0.00	0.00	NA	0.00	NA	0.81	0.00	-0.81	0.639686	0.838192
K	intron_retention	CHMP2A	chr19	-	chr19:59063553-59063625				chr19:59063552-59063553;chr19:59063625-59063626		1.52	2.97	3.82	2.16	2.01	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32	2.53	1.95	1.80	0.37	1.94	2.10	0.72	2.04	1.38	0.74	0.83	6.11	4.35	5.14	1.23	1.73	0.93	1.71	1.12	-0.59	0.998236	1.000000
K	cassette	NAP1L1	chr12	-	chr12:76454060-76478346;chr12:76454060-76467982	chr12:76454060-76461150;chr12:76461254-76478346,chr12:76461254-76467982		chr12:76461151-76461253			75.00	97.14	84.09	91.30	100.00	NA	89.31	85.00	89.00	94.96	95.17	94.68	89.68	87.50	86.60	95.83	96.50	95.92	84.62	76.19	80.00	91.30	93.98	91.36	100.00	80.00	88.64	96.72	97.73	96.15	68.75	90.74	100.00	92.05	91.67	86.36	93.41	78.09	-15.31	0.003428	0.209777
N	jcn_only_AD	CDC16	chr13	+	chr13:115024874-115027361	chr13:115025040-115027361		chr13:115024874-115025039	chr13:115024873-115024874		0.00	0.00	0.00	0.00	0.00	NA	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.04	0.00	0.00	3.28	6.25	0.00	0.00	12.50	9.09	5.26	0.00	NA	9.38	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.342120	0.657607
N	alternative_acceptor	RNH1	chr11	-	chr11:502250-504426;chr11:502182-504426	chr11:503613-504426		chr11:502182-502249;chr11:502250-503612	chr11:502181-502182;chr11:502249-502250		4.55	5.26	NA	0.00	1.96	NA	0.00	0.00	NA	14.29	0.00	11.76	0.86	0.00	3.12	1.19	12.50	0.00	0.00	NA	7.69	4.55	2.22	12.50	4.35	0.00	7.14	0.00	1.47	0.00	3.70	NA	15.38	2.00	2.99	1.30	2.60	0.00	-2.60	0.343048	0.709013
N	jcn_only_AA	ZDHHC12	chr9	-	chr9:131483777-131483929;chr9:131483810-131483929;chr9:131483782-131483929;chr9:131483680-131483929	chr9:131483760-131483929		chr9:131483680-131483759;chr9:131483760-131483776;chr9:131483777-131483781;chr9:131483782-131483809	chr9:131483679-131483680;chr9:131483759-131483760;chr9:131483776-131483777;chr9:131483781-131483782		4.65	11.94	4.29	0.00	3.12	8.33	5.97	4.00	5.95	4.76	6.94	7.14	6.72	5.33	4.49	7.89	2.38	12.00	4.35	5.71	2.80	15.38	6.78	0.00	26.09	13.51	19.72	15.79	14.55	14.29	11.25	12.77	18.37	8.33	13.04	13.64	9.33	5.52	-3.81	0.247075	0.663989
K	intron_retention	PLSCR1	chr3	-	chr3:146234955-146239330				chr3:146234954-146234955;chr3:146239330-146239331		2.72	0.00	3.43	1.14	1.75	2.27	0.00	0.50	0.13	0.57	0.00	0.80	0.00	0.67	0.61	1.89	1.52	1.09	0.00	1.09	1.53	1.54	0.00	2.60	0.00	0.93	1.39	1.74	0.00	0.87	2.81	2.03	0.00	5.00	4.00	2.95	0.00	1.01	1.01	0.046817	1.000000
N	cassette	COL23A1	chr5	-	chr5:177688750-177690208	chr5:177688750-177689217;chr5:177689254-177690208		chr5:177689218-177689253			83.33	100.00	NA	NA	83.33	NA	100.00	NA	NA	95.65	100.00	100.00	97.50	81.82	NA	100.00	96.25	96.67	93.33	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	96.30	100.00	NA	NA	NA	87.50	88.00	84.85	100.00	91.66	-8.34	0.268176	0.709176
K	jcn_only_AD	MRPL20,SMIM12	chr1	-	chr1:35321584-35325252;chr1:35321584-35325277	chr1:35321584-35325055		chr1:35325056-35325252;chr1:35325253-35325277	chr1:35325252-35325253;chr1:35325277-35325278		18.75	14.29	0.00	0.00	0.00	0.00	0.00	4.76	12.50	10.91	4.08	12.77	7.89	11.90	10.20	16.88	13.04	6.06	0.00	11.11	4.17	8.33	16.67	10.71	NA	11.11	0.00	6.45	9.52	0.00	0.00	0.00	0.00	14.29	5.00	5.00	0.00	11.11	11.11	0.221314	0.657607
N	jcn_only_AD	EHBP1L1	chr11	+	chr11:65348594-65348681	chr11:65348598-65348681		chr11:65348594-65348597	chr11:65348593-65348594		94.92	90.24	94.35	NA	100.00	NA	100.00	98.30	98.53	100.00	100.00	100.00	100.00	99.12	100.00	100.00	98.82	100.00	100.00	93.50	88.68	100.00	95.59	95.24	100.00	94.85	92.22	93.75	96.49	95.24	88.89	90.34	92.00	91.67	94.59	100.00	100.00	94.88	-5.12	0.402707	0.667381
K	cassette	AGTRAP	chr1	+	chr1:11805895-11807496	chr1:11805895-11806183;chr1:11806281-11807496		chr1:11806184-11806280			4.30	4.44	8.62	11.11	3.33	NA	3.26	9.60	12.62	3.17	4.55	6.82	5.13	11.41	12.14	10.81	4.29	10.26	0.00	6.93	3.90	7.69	3.45	3.70	0.00	11.40	6.30	12.90	3.57	8.89	9.33	7.69	6.90	6.38	6.67	11.11	3.85	9.46	5.62	0.006290	0.262483
N	jcn_only_AA	SUGP1	chr19	-	chr19:19391096-19407797	chr19:19391101-19407797		chr19:19391096-19391100	chr19:19391095-19391096		95.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr2	+	chr2:219259790-219260361				chr2:219259789-219259790;chr2:219260361-219260362		98.62	96.45	98.71	97.03	98.30	98.10	92.68	96.26	94.69	95.29	95.58	97.73	95.33	96.94	96.43	90.22	96.21	94.34	88.46	89.90	93.55	91.89	91.75	92.86	93.26	88.01	94.81	95.37	94.90	91.84	98.79	99.10	98.45	98.89	100.00	96.23	94.30	96.60	2.30	0.983747	1.000000
N	jcn_only_AA	NCKAP1L,OS9	chr12	+	chr12:58109754-58109874;chr12:58109754-58109885	chr12:58109754-58109871		chr12:58109872-58109874;chr12:58109875-58109885	chr12:58109874-58109875;chr12:58109885-58109886		39.10	47.12	36.41	37.04	41.94	35.00	27.35	31.03	31.03	31.77	27.59	30.89	31.93	27.85	26.10	26.09	26.38	29.13	48.57	38.95	39.33	34.09	37.75	37.70	56.25	38.99	39.13	30.41	33.94	38.30	36.27	40.61	44.44	43.81	41.25	40.52	45.78	37.61	-8.17	0.180243	0.663989
K	intron_retention	TRAPPC12	chr2	+	chr2:3482705-3482989				chr2:3482704-3482705;chr2:3482989-3482990		7.14	1.00	4.55	0.00	4.55	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.17	3.33	2.44	0.00	5.26	NA	4.39	4.55	1.82	4.00	5.08	0.00	4.17	1.52	2.68	0.00	2.70	0.00	1.58	3.75	2.17	0.975762	1.000000
N	cassette	ZFYVE26	chr14	-	chr14:68220484-68221767	chr14:68220484-68220787;chr14:68220930-68221767		chr14:68220788-68220929			97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	96.15	100.00	92.86	100.00	NA	100.00	100.00	100.00	100.00	98.13	100.00	100.00	100.00	95.35	100.00	98.39	100.00	100.00	0.00	0.176128	0.709176
K	intron_retention	ATXN2L	chr16	+	chr16:28847444-28848068				chr16:28847443-28847444;chr16:28848068-28848069		100.00	100.00	95.83	100.00	98.57	100.00	100.00	100.00	94.44	96.43	90.91	84.62	100.00	100.00	100.00	100.00	93.33	81.82	95.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	98.65	96.43	97.67	96.43	100.00	97.70	95.74	100.00	98.00	96.23	98.69	100.00	1.31	0.169468	1.000000
N	alternative_acceptor	RPS13	chr11	-	chr11:17096014-17096643	chr11:17096224-17096643		chr11:17096014-17096223	chr11:17096013-17096014		1.87	0.08	0.48	0.40	0.18	0.34	0.00	0.00	0.00	0.22	0.19	0.00	0.20	0.00	0.00	0.21	0.26	0.00	0.61	2.60	0.73	0.39	0.48	0.36	0.37	2.22	0.51	0.35	0.49	0.17	5.95	2.67	0.73	0.32	0.58	0.56	0.29	2.04	1.76	0.104126	0.598353
K	alternative_acceptor	FDXR	chr17	-	chr17:72863021-72868160;chr17:72862999-72868160	chr17:72863002-72868160		chr17:72862999-72863001;chr17:72863002-72863020	chr17:72862998-72862999;chr17:72863001-72863002		7.69	13.33	11.54	NA	NA	NA	8.33	NA	7.14	NA	11.76	NA	7.41	10.00	5.88	NA	NA	NA	8.33	11.76	7.14	NA	NA	NA	0.00	NA	11.43	NA	NA	NA	8.00	7.69	10.00	NA	13.33	10.00	8.33	9.00	0.67	0.494373	0.791230
K	jcn_only_AD	HAUS4	chr14	-	chr14:23424386-23425954;chr14:23424386-23426124	chr14:23424386-23426132		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		19.23	20.00	20.00	NA	13.33	NA	21.98	18.52	19.64	20.00	23.81	15.79	20.00	20.00	28.57	28.00	30.61	26.67	27.27	21.74	20.00	NA	38.10	NA	NA	19.23	29.17	NA	38.10	NA	45.45	20.00	NA	0.00	50.00	25.00	20.99	19.62	-1.38	0.723249	0.857248
K	intron_retention		chr8	+	chr8:41476332-41476416				chr8:41476331-41476332;chr8:41476416-41476417		7.64	2.63	3.60	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	5.95	3.38	6.45	1.06	2.68	0.00	3.19	1.27	1.05	0.00	0.69	15.66	9.09	3.51	2.05	5.26	2.52	1.25	4.57	3.32	0.339350	1.000000
N	jcn_only_AA		chr9	+	chr9:92220090-92220581	chr9:92220090-92220346					92.45	70.00	85.71	92.94	83.33	93.51	100.00	100.00	98.85	97.50	100.00	100.00	NA	100.00	100.00	99.10	80.00	100.00	80.00	91.84	94.44	97.22	79.17	97.20	85.71	100.00	100.00	98.51	81.48	100.00	93.27	88.33	75.00	93.33	87.50	98.18	80.00	96.63	16.63	0.049905	0.663989
N	jcn_only_AA	SCAMP3	chr1	-	chr1:155228704-155230120;chr1:155228684-155230120	chr1:155228746-155230120		chr1:155228684-155228703;chr1:155228704-155228745	chr1:155228683-155228684;chr1:155228703-155228704		100.00	100.00	100.00	88.24	98.08	NA	98.68	97.96	98.88	98.70	98.00	97.33	97.80	100.00	97.75	97.26	100.00	95.83	92.31	96.00	96.49	100.00	98.57	100.00	100.00	97.62	98.39	96.97	98.08	100.00	96.36	100.00	95.74	97.78	98.61	95.24	98.24	97.79	-0.45	0.695417	0.866064
K	alternative_donor	ARPC4,ARPC4-TTLL3	chr3	+	chr3:9834809-9839342;chr3:9834866-9839342	chr3:9834390-9839342		chr3:9834390-9834808;chr3:9834809-9834865	chr3:9834389-9834390;chr3:9834808-9834809		7.14	20.00	12.50	0.00	17.65	NA	14.75	7.25	9.30	6.25	10.40	5.97	13.28	10.00	12.28	7.14	9.09	8.00	22.22	7.89	0.00	6.06	12.00	5.88	15.79	7.50	12.24	5.26	19.64	8.70	12.12	7.50	15.79	5.88	10.91	14.00	15.79	7.70	-8.09	0.000839	0.083733
K	intron_retention		chr5	-	chr5:176911192-176915068				chr5:176911191-176911192;chr5:176915068-176915069		5.07	6.12	6.62	5.41	6.77	6.90	0.00	0.00	0.00	0.00	1.41	NA	0.00	0.00	0.00	0.00	2.35	0.00	3.92	6.19	5.30	0.00	6.98	0.00	14.63	7.34	7.23	0.00	4.80	0.00	8.77	7.95	4.17	8.89	4.21	11.11	4.04	5.63	1.59	0.783802	1.000000
N	alternative_acceptor		chr22	+	chr22:38026178-38026913;chr22:38026178-38026919	chr22:38026178-38026909		chr22:38026910-38026913;chr22:38026914-38026919	chr22:38026913-38026914;chr22:38026919-38026920		93.75	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	95.83	NA	93.75	100.00	NA	100.00	100.00	NA	NA	96.77	85.71	100.00	100.00	NA	NA	100.00	94.74	100.00	93.55	NA	100.00	96.55	100.00	100.00	100.00	92.86	100.00	100.00	0.00	0.873156	0.956197
K	intron_retention	ABCF3	chr3	+	chr3:183910478-183910592				chr3:183910477-183910478;chr3:183910592-183910593		6.90	3.09	2.78	2.56	8.20	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	2.78	0.00	4.35	2.50	1.79	2.63	8.70	8.82	0.00	5.13	5.80	0.00	5.88	8.11	10.91	10.42	7.14	5.00	8.82	7.69	1.54	3.81	2.27	0.710312	1.000000
N	alternative_acceptor	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556658;chr11:62555000-62556573;chr11:62555000-62556597	chr11:62555000-62556494		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		100.00	96.67	94.64	100.00	100.00	NA	97.78	97.30	100.00	92.86	100.00	96.00	100.00	96.43	100.00	96.88	100.00	94.74	100.00	83.78	84.62	100.00	83.72	95.24	NA	100.00	95.45	100.00	88.46	73.91	95.45	79.66	71.43	88.24	93.10	97.67	97.78	96.87	-0.91	0.713716	0.891525
N	cassette	ZSWIM8	chr10	+	chr10:75559249-75560053	chr10:75559249-75559768;chr10:75559953-75560053		chr10:75559769-75559952			100.00	100.00	98.04	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.44	98.00	92.31	100.00	100.00	100.00	100.00	100.00	0.00	0.319794	0.709176
K	jcn_only_AA	HDAC10,MAPK12	chr22	-	chr22:50687289-50687531	chr22:50687320-50687531		chr22:50687289-50687319	chr22:50687288-50687289		90.00	100.00	90.00	NA	NA	NA	96.88	NA	100.00	100.00	92.86	100.00	100.00	91.67	100.00	100.00	93.75	91.67	NA	81.82	93.33	NA	93.75	NA	87.50	93.75	75.00	91.67	86.67	100.00	NA	78.57	72.73	92.31	91.67	92.00	96.88	90.84	-6.04	0.729724	0.878825
N	jcn_only_AA	SLC39A11	chr17	-	chr17:70645408-70732788;chr17:70725143-70732788;chr17:70691206-70732788;chr17:70709121-70732788	chr17:70721976-70732788		chr17:70645408-70691205;chr17:70691206-70709120;chr17:70709121-70721975;chr17:70721976-70725142	chr17:70645407-70645408;chr17:70691205-70691206;chr17:70709120-70709121;chr17:70721975-70721976		0.00	0.00	0.00	NA	0.00	NA	3.08	9.09	5.41	12.50	10.64	17.86	5.41	21.43	3.33	13.64	0.00	15.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.402101	0.674032
N	jcn_only_AA	SMPD1	chr11	+	chr11:6415272-6415448;chr11:6415272-6415407	chr11:6415272-6415427		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		95.00	100.00	100.00	100.00	100.00	NA	91.04	95.83	88.57	92.45	88.75	100.00	100.00	100.00	90.91	90.91	98.33	95.45	100.00	96.77	98.21	95.24	97.50	100.00	100.00	100.00	100.00	100.00	94.44	100.00	95.83	93.18	96.97	97.96	97.56	95.74	100.00	96.30	-3.70	0.670627	0.854292
N	alternative_donor	FARSA	chr19	-	chr19:13035080-13035262	chr19:13035080-13035256		chr19:13035257-13035262	chr19:13035262-13035263		4.35	0.00	1.89	0.00	1.82	0.00	0.00	0.00	0.00	1.54	1.15	6.67	0.00	0.00	0.00	1.25	0.00	NA	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	3.45	0.00	0.00	0.00	0.683204	0.864545
K	jcn_only_AA	SLIRP	chr14	+	chr14:78182223-78183844;chr14:78182223-78183822	chr14:78182223-78183838		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		91.67	99.35	92.98	96.30	96.03	97.30	96.67	100.00	100.00	95.52	100.00	98.11	96.05	100.00	96.08	93.94	97.17	95.45	93.01	85.71	95.12	95.65	93.59	94.87	98.43	100.00	94.23	97.87	97.22	100.00	91.30	100.00	94.15	92.16	98.53	94.64	96.36	95.84	-0.52	0.594937	0.812401
K	cassette	MPHOSPH8	chr13	+	chr13:20244504-20245345	chr13:20244504-20244979;chr13:20245105-20245345		chr13:20244980-20245104			31.25	80.00	40.62	NA	50.00	NA	26.67	30.00	20.00	16.67	30.77	NA	23.08	18.18	9.09	0.00	0.00	NA	40.00	37.50	50.00	33.33	23.53	27.27	NA	60.00	47.37	50.00	33.33	NA	NA	37.50	NA	37.50	29.41	62.50	33.34	31.25	-2.09	0.654313	0.873328
N	jcn_only_AA	PLXND1	chr3	-	chr3:129286649-129288685;chr3:129286626-129288685	chr3:129286879-129288685		chr3:129286626-129286648;chr3:129286649-129286878	chr3:129286625-129286626;chr3:129286648-129286649		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	5.41	0.00	0.00	0.00	0.00	NA	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	cassette	PLRG1	chr4	-	chr4:155457897-155459120	chr4:155457897-155458437;chr4:155458632-155459120		chr4:155458438-155458631			100.00	100.00	100.00	100.00	100.00	93.02	100.00	100.00	100.00	100.00	93.48	100.00	100.00	100.00	100.00	89.80	100.00	90.91	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	96.67	98.04	100.00	100.00	100.00	100.00	98.46	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	HECTD3	chr1	-	chr1:45469609-45469731	chr1:45469633-45469731		chr1:45469609-45469632	chr1:45469608-45469609		9.09	0.00	3.70	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.94	0.00	0.00	NA	0.00	0.00	0.00	4.26	0.00	0.00	0.00	3.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.240147	0.694094
N	alternative_acceptor		chr20	+	chr20:30746318-30747058;chr20:30746318-30746972	chr20:30746318-30747794		chr20:30746973-30747058;chr20:30747059-30747794	chr20:30747058-30747059;chr20:30747794-30747795		96.61	NA	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.56	96.08	100.00	100.00	100.00	100.00	97.89	100.00	95.45	96.67	91.67	100.00	100.00	0.00	0.179453	0.660713
N	alternative_acceptor	PSMD8	chr19	+	chr19:38872869-38873896;chr19:38872869-38873892	chr19:38872869-38873036		chr19:38873037-38873892;chr19:38873893-38873896	chr19:38873892-38873893;chr19:38873896-38873897		7.35	5.81	7.86	4.02	2.67	3.91	0.81	0.95	0.85	1.42	0.47	0.93	1.71	2.30	4.17	2.84	1.33	1.15	3.73	7.41	3.85	8.13	7.19	8.97	5.98	5.11	5.48	3.31	3.12	3.30	12.88	12.96	5.71	7.04	7.14	8.72	4.72	6.23	1.51	0.332450	0.709013
K	intron_retention	AP1G2	chr14	-	chr14:24029246-24029463				chr14:24029245-24029246;chr14:24029463-24029464		12.82	14.29	27.27	14.29	17.50	23.53	0.00	11.11	0.00	0.00	0.00	0.00	0.00	3.57	3.70	NA	5.88	NA	8.57	19.23	8.00	NA	22.22	23.08	8.70	15.00	21.74	18.18	16.13	18.75	11.11	11.86	9.84	21.43	16.67	19.23	8.63	11.96	3.33	0.563826	1.000000
K	cassette	NUBP1	chr16	+	chr16:10846536-10851729	chr16:10846536-10850546;chr16:10850638-10851729		chr16:10850547-10850637			92.86	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	96.30	100.00	100.00	100.00	0.00	0.391002	0.709410
K	cassette	HLA-F	chr6	+	chr6:29692226-29693223	chr6:29692226-29692807;chr6:29693084-29693223		chr6:29692808-29693083			96.32	91.30	95.95	89.20	91.85	94.86	96.82	99.20	99.53	97.38	97.83	98.14	96.63	99.41	99.78	96.39	100.00	98.80	91.67	93.79	97.65	96.34	91.23	96.62	93.16	97.79	97.77	95.13	94.12	97.72	98.70	98.67	94.06	97.04	97.18	98.08	93.61	98.25	4.64	0.020857	0.390745
N	alternative_acceptor	RPS5	chr19	+	chr19:58905963-58906048;chr19:58905963-58906078	chr19:58905963-58906075		chr19:58906049-58906075;chr19:58906076-58906078	chr19:58906075-58906076;chr19:58906078-58906079		9.09	2.52	0.00	0.35	0.50	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	0.00	2.40	0.00	0.58	0.00	1.32	2.30	0.72	NA	0.00	0.00	0.00	0.00	7.14	0.00	2.43	1.92	0.82	0.74	1.56	0.00	-1.56	0.405768	0.720131
N	cassette	TM2D1	chr1	-	chr1:62149219-62166605	chr1:62149219-62160368;chr1:62160443-62166605		chr1:62160369-62160442			94.12	100.00	100.00	100.00	100.00	NA	100.00	93.33	100.00	100.00	97.83	100.00	96.23	100.00	100.00	96.77	100.00	100.00	100.00	100.00	86.36	95.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	89.66	100.00	92.86	100.00	100.00	100.00	100.00	0.00	0.351470	0.709176
N	jcn_only_AD	AHCY	chr20	-	chr20:32883392-32887352;chr20:32883392-32889563	chr20:32883392-32891048		chr20:32887353-32889563;chr20:32889564-32891048	chr20:32889563-32889564;chr20:32891048-32891049		100.00	100.00	100.00	NA	100.00	NA	98.92	100.00	100.00	100.00	99.44	100.00	100.00	93.33	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.474955	0.722543
K	jcn_only_AD	KAT5	chr11	+	chr11:65486221-65486343	chr11:65486247-65486343		chr11:65486221-65486246	chr11:65486220-65486221		4.23	0.00	6.25	11.11	3.12	4.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	1.61	0.00	6.38	5.17	4.55	5.00	4.69	4.26	0.00	5.26	5.45	0.00	4.29	4.00	11.69	3.17	3.57	9.52	3.23	5.33	0.00	4.70	4.70	0.224082	0.657607
K	cassette	TSFM	chr12	+	chr12:58180946-58189959	chr12:58180946-58186768;chr12:58186857-58189959		chr12:58186769-58186856			83.64	92.31	84.21	92.86	100.00	96.77	95.24	98.21	93.69	95.35	100.00	100.00	100.00	96.91	95.83	93.18	100.00	100.00	86.67	88.89	88.51	86.36	88.24	100.00	NA	89.47	89.81	95.24	94.44	100.00	81.58	78.35	78.95	92.86	100.00	93.75	92.31	89.18	-3.13	0.856733	0.951388
N	cassette	DENND5A	chr11	-	chr11:9163656-9164949;chr11:9163656-9165643	chr11:9163656-9164268;chr11:9164393-9164949,chr11:9164393-9165643		chr11:9164269-9164392			93.65	100.00	94.44	93.94	91.67	94.52	100.00	100.00	100.00	98.13	100.00	98.16	100.00	100.00	99.12	100.00	97.78	98.16	NA	90.16	94.74	96.67	93.33	98.06	100.00	95.77	92.50	97.30	100.00	99.20	93.62	89.39	100.00	95.71	91.80	93.46	100.00	94.71	-5.29	0.037743	0.488004
N	jcn_only_AD		chr12	-	chr12:57911537-57914196;chr12:57911537-57912380;chr12:57911537-57917149	chr12:57911537-57914200		chr12:57912381-57914196;chr12:57914197-57914200;chr12:57914201-57917149	chr12:57914196-57914197;chr12:57914200-57914201;chr12:57917149-57917150		100.00	100.00	92.31	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.45	98.00	97.96	100.00	100.00	100.00	100.00	100.00	0.00	0.758119	0.875385
N	jcn_only_AD	MYO18A	chr17	-	chr17:27401933-27404045;chr17:27401933-27409333	chr17:27401933-27406744		chr17:27404046-27406744;chr17:27406745-27409333	chr17:27406744-27406745;chr17:27409333-27409334		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	LSM14A,NDUFS7	chr19	+	chr19:1393330-1395389	chr19:1393330-1394416		chr19:1394417-1395389	chr19:1395389-1395390		12.00	12.43	15.00	7.41	12.17	5.15	1.89	6.67	4.55	2.22	5.00	2.63	3.92	8.33	7.41	3.08	3.77	3.33	8.90	14.29	7.05	7.14	9.70	2.94	12.66	9.09	16.28	4.17	9.01	5.88	16.67	22.86	9.23	13.33	12.16	5.68	9.07	10.54	1.48	0.237262	0.692777
N	alternative_last_exon		chr19	+	chr19:35657075-35657192;chr19:35657075-35660468	chr19:35657075-35657153	chr19:35660469-35660786	chr19:35657154-35657664			95.19	95.73	100.00	97.49	96.43	97.44	97.50	98.31	100.00	100.00	99.18	100.00	100.00	100.00	100.00	100.00	97.90	100.00	96.58	94.81	100.00	100.00	97.50	100.00	97.49	96.88	100.00	97.67	96.76	100.00	97.83	100.00	95.42	96.88	100.00	98.36	97.03	97.35	0.32	0.962947	0.976066
N	cassette	TYMP	chr22	-	chr22:50966147-50967955;chr22:50966147-50967924;chr22:50967040-50967924;chr22:50965168-50967924;chr22:50967003-50967924;chr22:50965168-50968332;chr22:50966162-50968332;chr22:50967040-50967955;chr22:50966147-50968332;chr22:50967040-50968332	chr22:50967040-50967564,chr22:50966162-50967564,chr22:50965168-50967564,chr22:50967003-50967564,chr22:50966147-50967564;chr22:50967768-50968332,chr22:50967768-50967924,chr22:50967768-50967955		chr22:50967565-50967767			86.82	53.64	74.22	56.95	48.30	51.93	100.00	98.56	99.08	99.17	98.35	99.14	99.42	96.28	96.90	98.25	97.99	98.96	73.10	91.49	84.43	81.45	70.62	87.96	66.21	95.57	89.24	93.81	86.06	94.10	85.40	87.57	56.76	79.46	82.50	86.87	69.66	93.53	23.88	0.091615	0.658231
N	alternative_acceptor	CPNE1	chr20	-	chr20:34219096-34219189;chr20:34219120-34219189;chr20:34219092-34219189	chr20:34219086-34219189		chr20:34219086-34219091;chr20:34219092-34219095;chr20:34219096-34219119	chr20:34219085-34219086;chr20:34219091-34219092;chr20:34219095-34219096		0.00	0.00	2.44	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	7.14	0.00	NA	6.25	0.00	NA	0.00	0.00	NA	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	3.12	3.12	0.183093	0.660713
N	cassette	GCA	chr2	+	chr2:163215668-163216735	chr2:163215668-163216003;chr2:163216063-163216735		chr2:163216004-163216062			94.74	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.724785	0.904012
K	coord_cassette	ARHGEF1	chr19	+	chr19:42400556-42402590	chr19:42400556-42401463;chr19:42401476-42402094;chr19:42402263-42402590		chr19:42401464-42401475;chr19:42402095-42402262			7.02	3.77	12.00	NA	14.29	NA	25.00	15.79	13.16	70.00	52.17	NA	34.21	17.86	22.86	81.25	70.83	NA	18.18	5.88	8.00	NA	33.33	NA	8.33	20.69	11.36	NA	47.06	NA	8.70	11.11	NA	21.74	22.22	20.69	18.18	12.24	-5.94	0.423012	0.674306
K	alternative_acceptor	YIPF3	chr6	-	chr6:43483785-43484464;chr6:43483834-43484464;chr6:43483852-43484464;chr6:43483929-43484464	chr6:43483926-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		0.00	1.89	0.96	NA	0.00	NA	1.49	0.00	1.69	0.00	0.00	0.00	0.00	1.75	1.72	0.00	2.33	0.00	0.00	1.85	0.00	4.55	1.75	0.00	6.45	0.00	3.90	0.00	0.00	4.35	2.08	2.99	0.00	2.38	2.17	2.94	0.74	0.88	0.13	0.552604	0.824386
K	intron_retention	FAM160A2	chr11	-	chr11:6233098-6235640				chr11:6233097-6233098;chr11:6235640-6235641		3.23	0.00	2.50	0.00	0.00	7.14	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	3.70	5.88	0.00	6.06	0.00	0.00	0.00	3.45	0.00	NA	0.00	0.00	3.64	4.35	5.88	2.86	3.57	0.00	0.00	0.00	0.970180	1.000000
K	jcn_only_AA	ARRDC1	chr9	+	chr9:140508222-140508432;chr9:140508222-140508483	chr9:140508222-140508591		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		4.00	3.53	6.98	NA	0.00	NA	0.00	6.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.85	0.00	10.53	0.00	10.20	0.00	0.00	0.00	7.50	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.716212	0.875250
K	coord_cassette	SLC25A19	chr17	-	chr17:73269721-73279503	chr17:73269721-73273433;chr17:73273565-73274232;chr17:73274417-73279503		chr17:73273434-73273564;chr17:73274233-73274416			96.15	100.00	100.00	92.59	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	96.88	100.00	98.99	96.88	100.00	100.00	92.31	97.30	96.97	95.52	100.00	100.00	100.00	97.87	100.00	99.00	100.00	93.75	91.89	96.30	96.30	100.00	100.00	100.00	96.52	-3.48	0.083790	0.643829
K	intron_retention		chr1	-	chr1:153949490-153949645				chr1:153949489-153949490;chr1:153949645-153949646		6.25	2.80	9.23	11.11	4.63	8.33	0.48	2.86	1.23	1.71	0.00	0.00	1.02	0.00	3.27	1.34	1.55	0.00	3.93	9.84	5.70	11.43	5.94	16.67	5.15	7.22	8.27	8.14	5.99	11.34	11.93	9.77	5.08	6.60	6.21	11.76	3.37	6.73	3.37	0.351065	1.000000
N	jcn_only_AD	KMO	chr1	+	chr1:241750043-241752049;chr1:241751182-241752049;chr1:241751757-241752049;chr1:241751302-241752049	chr1:241750039-241752049		chr1:241750039-241750042;chr1:241750043-241751181;chr1:241751182-241751301;chr1:241751302-241751756	chr1:241750038-241750039;chr1:241750042-241750043;chr1:241751181-241751182;chr1:241751301-241751302		97.37	86.67	100.00	100.00	100.00	97.22	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.58	100.00	98.44	100.00	100.00	100.00	99.26	NA	97.14	100.00	100.00	100.00	99.53	98.63	100.00	100.00	99.32	98.90	99.20	100.00	98.31	-1.69	0.739370	0.864412
K	alternative_first_exon	SLC43A2	chr17	-	chr17:1531215-1531407,chr17:1531215-1532898;chr17:1531215-1532087	chr17:1531215-1531374	chr17:1532088-1532130	chr17:1531375-1531635			16.07	66.67	16.78	NA	NA	NA	29.79	8.80	8.40	9.33	20.00	12.50	24.62	10.66	7.01	13.68	18.42	9.68	NA	12.70	8.33	21.05	13.79	20.83	25.00	12.35	17.11	17.24	14.63	12.90	8.70	17.39	NA	26.92	28.95	23.64	27.39	11.50	-15.89	0.089359	0.251147
K	intron_retention		chr16	+	chr16:28509318-28509401				chr16:28509317-28509318;chr16:28509401-28509402		3.80	3.31	4.26	6.45	3.23	2.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.82	0.00	0.00	4.55	5.71	1.94	3.12	3.53	5.97	4.66	4.84	3.33	1.12	1.16	1.04	8.24	3.57	6.17	5.41	1.20	3.64	3.93	4.32	0.39	0.900505	1.000000
K	intron_retention	SEMA4A	chr1	+	chr1:156130351-156130695				chr1:156130350-156130351;chr1:156130695-156130696		1.30	10.53	2.22	NA	2.78	41.67	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.55	0.00	1.54	0.49	0.00	NA	1.65	3.57	0.00	1.19	0.00	NA	1.67	1.27	4.00	1.41	0.00	0.00	0.61	0.00	4.07	1.21	3.29	0.00	0.93	0.93	0.467346	1.000000
K	intron_retention		chr17	-	chr17:79875844-79875914				chr17:79875843-79875844;chr17:79875914-79875915		0.00	8.06	9.52	NA	NA	NA	0.00	6.90	13.33	0.00	4.55	NA	3.70	3.33	14.29	0.00	0.00	NA	0.00	0.00	7.14	0.00	2.70	NA	3.23	0.00	3.23	0.00	5.88	0.00	0.00	2.86	0.00	0.00	0.00	0.00	1.61	0.00	-1.61	0.666437	1.000000
K	intron_retention		chr20	+	chr20:61439678-61440936				chr20:61439677-61439678;chr20:61440936-61440937		2.94	6.35	5.56	2.22	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.99	1.31	0.56	0.00	0.00	2.70	2.59	2.08	1.28	2.44	2.21	0.00	2.78	2.97	1.39	2.47	1.77	2.69	3.91	0.00	2.78	2.56	2.43	0.61	2.64	2.03	0.980024	1.000000
K	cassette	SYPL1	chr7	-	chr7:105732386-105733394	chr7:105732386-105733009;chr7:105733116-105733394		chr7:105733010-105733115			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	1.27	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	2.86	5.00	0.00	1.82	0.00	0.00	0.00	0.879885	0.961589
N	cassette	PSMA4	chr15	+	chr15:78834273-78834824;chr15:78834273-78834917	chr15:78834273-78834518;chr15:78834562-78834917,chr15:78834562-78834824		chr15:78834519-78834561			99.53	100.00	100.00	100.00	100.00	90.91	100.00	99.70	99.72	100.00	99.32	100.00	100.00	99.69	100.00	99.61	100.00	99.47	100.00	99.55	100.00	98.78	100.00	100.00	NA	99.68	99.25	100.00	100.00	99.44	100.00	100.00	100.00	100.00	99.11	99.58	100.00	99.69	-0.31	0.006460	0.265531
N	jcn_only_AA	FRA10AC1	chr10	-	chr10:95435459-95436409;chr10:95431847-95436409	chr10:95430606-95436409		chr10:95430606-95431846;chr10:95431847-95435458	chr10:95430605-95430606;chr10:95431846-95431847		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.80	93.33	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	DYNLL1	chr12	+	chr12:120934020-120935875;chr12:120934357-120935875	chr12:120935698-120935875		chr12:120934020-120934356;chr12:120934357-120935697	chr12:120934019-120934020;chr12:120934356-120934357		5.50	2.78	7.02	2.54	2.65	1.56	0.87	1.18	0.75	2.06	1.46	3.03	1.04	1.08	0.83	1.79	0.93	0.00	1.71	7.24	2.13	8.33	5.48	10.71	1.82	5.17	5.03	2.86	2.69	4.39	11.72	10.67	4.42	6.36	6.28	9.46	1.77	5.33	3.57	0.110408	0.520337
K	alternative_acceptor	PDLIM7	chr5	-	chr5:176916834-176917870	chr5:176917033-176917870		chr5:176916834-176917032	chr5:176916833-176916834		16.04	37.50	18.18	12.50	33.33	10.00	4.17	10.53	10.00	7.14	3.95	0.00	5.88	7.41	6.25	8.57	7.62	9.09	NA	16.67	15.49	23.08	32.31	30.00	NA	17.72	27.08	21.43	20.90	NA	14.52	15.38	28.57	20.00	23.94	20.69	17.23	15.28	-1.95	0.578134	0.839743
N	alternative_acceptor	SOD2	chr6	-	chr6:160100331-160109157	chr6:160103671-160109157		chr6:160100331-160103670	chr6:160100330-160100331		99.16	100.00	99.28	99.72	99.09	99.79	100.00	98.06	98.31	100.00	100.00	100.00	91.67	96.84	97.08	98.89	100.00	99.21	97.20	95.80	96.43	99.51	99.21	99.70	100.00	96.75	97.99	99.76	100.00	99.44	89.99	93.18	95.69	99.14	99.21	98.59	98.60	96.80	-1.80	0.499744	0.791230
N	alternative_donor	DESI1	chr22	-	chr22:41997195-41998689;chr22:41997195-41998427;chr22:41997195-41998686	chr22:41997195-41999262		chr22:41998428-41998686;chr22:41998687-41998689;chr22:41998690-41999262	chr22:41998686-41998687;chr22:41998689-41998690;chr22:41999262-41999263		96.23	100.00	93.51	100.00	100.00	100.00	96.88	97.14	98.43	94.07	95.29	94.85	100.00	97.75	98.40	97.78	96.84	95.79	100.00	97.53	100.00	98.53	100.00	97.33	100.00	98.44	98.61	98.02	100.00	98.75	98.88	98.10	100.00	96.30	98.59	96.99	100.00	97.64	-2.36	0.019890	0.273169
N	cassette	STXBP2	chr19	+	chr19:7707935-7709499;chr19:7707935-7709467	chr19:7707935-7708050;chr19:7708132-7709499,chr19:7708132-7709467		chr19:7708051-7708131			91.55	82.49	87.50	87.50	88.42	83.33	100.00	97.67	97.85	93.75	95.41	96.23	100.00	98.65	96.74	96.55	100.00	96.92	89.31	91.50	92.18	80.36	84.72	84.13	82.76	92.71	91.30	92.98	92.79	94.03	91.11	85.71	87.01	90.48	86.05	88.32	88.16	92.13	3.97	0.343321	0.709176
N	cassette	AVL9	chr7	+	chr7:32615685-32620413;chr7:32613031-32620413	chr7:32613031-32619830,chr7:32615685-32619830;chr7:32619885-32620413		chr7:32619831-32619884			100.00	100.00	82.35	100.00	NA	100.00	100.00	88.24	90.00	90.91	96.00	100.00	100.00	94.74	94.44	96.30	94.74	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	90.48	80.00	94.74	100.00	93.75	100.00	100.00	0.00	0.708276	0.895178
K	intron_retention	RBM39	chr20	-	chr20:34292504-34292589				chr20:34292503-34292504;chr20:34292589-34292590		2.35	4.42	2.08	1.22	0.41	0.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	2.96	2.42	2.10	1.84	3.26	0.00	3.73	0.93	0.00	0.59	2.15	5.91	5.61	3.65	2.63	3.31	2.21	0.83	2.66	1.82	0.925369	1.000000
K	cassette	RAB9A	chrX	+	chrX:13707408-13726839	chrX:13707408-13721932;chrX:13722022-13726839		chrX:13721933-13722021			67.39	52.00	70.00	NA	77.42	NA	76.81	72.31	71.70	82.22	86.49	89.55	79.71	81.71	72.73	83.72	80.36	85.00	NA	62.50	NA	85.00	73.08	91.67	NA	65.38	76.19	87.50	81.40	85.19	66.67	67.39	50.00	85.07	81.58	84.93	64.41	67.03	2.62	0.606973	0.853757
N	alternative_acceptor	UNC13D	chr17	-	chr17:73827430-73829046;chr17:73827343-73829046	chr17:73827499-73829046		chr17:73827343-73827429;chr17:73827430-73827498	chr17:73827342-73827343;chr17:73827429-73827430		22.22	9.52	12.50	NA	8.33	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	10.87	7.14	NA	4.55	NA	NA	10.87	8.11	NA	0.00	NA	11.54	13.16	5.88	7.14	6.25	12.50	0.00	10.87	10.87	0.157228	0.660713
K	intron_retention		chr4	+	chr4:84382186-84382273				chr4:84382185-84382186;chr4:84382273-84382274		5.26	2.04	2.94	4.44	3.80	1.49	4.35	2.47	3.03	0.00	1.64	3.33	4.76	1.64	0.00	3.33	3.39	0.00	5.06	5.00	2.59	5.00	1.59	0.00	11.11	3.30	1.72	0.00	3.77	3.77	2.53	4.92	7.55	5.41	6.52	1.85	4.91	2.92	-2.00	0.941500	1.000000
K	intron_retention	APOBR	chr16	+	chr16:28509671-28509756				chr16:28509670-28509671;chr16:28509756-28509757		1.40	1.57	2.56	3.12	3.83	3.67	0.00	0.00	0.00	0.00	0.00	0.00	1.49	1.82	NA	6.12	0.00	0.00	1.86	4.11	1.87	6.67	2.11	1.75	2.96	1.90	0.00	2.50	3.25	3.26	0.00	0.00	3.35	4.76	3.61	4.44	1.72	1.61	-0.11	0.897768	1.000000
N	jcn_only_AA	UBAC1	chr9	-	chr9:138830126-138831518	chr9:138830207-138831518		chr9:138830126-138830206	chr9:138830125-138830126		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.68	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.08	100.00	100.00	94.83	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	RAE1	chr20	+	chr20:55951323-55953068;chr20:55950127-55953068	chr20:55949858-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		95.45	90.32	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.00	97.06	97.30	100.00	97.78	95.24	100.00	96.43	98.08	96.55	100.00	100.00	97.06	100.00	100.00	100.00	96.88	97.92	96.30	98.04	94.44	94.29	98.89	96.88	-2.01	0.952840	0.984606
N	alternative_acceptor	ADAP1,COX19	chr7	-	chr7:938917-939055;chr7:938815-939055	chr7:938899-939055		chr7:938815-938898;chr7:938899-938916	chr7:938814-938815;chr7:938898-938899		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.04	97.37	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr2	+	chr2:85823773-85823979				chr2:85823772-85823773;chr2:85823979-85823980		68.75	49.18	62.50	68.42	56.00	54.17	58.33	56.52	61.54	60.00	61.54	63.64	64.00	47.37	73.08	50.00	63.16	54.55	49.12	60.61	55.70	60.00	45.45	54.55	70.59	63.64	75.00	62.50	52.38	59.26	45.10	54.93	50.00	45.00	44.00	56.52	54.16	58.56	4.40	0.908578	1.000000
K	intron_retention	PLEKHM1P	chr17	-	chr17:62775453-62775532				chr17:62775452-62775453;chr17:62775532-62775533		51.85	21.05	48.39	NA	46.34	NA	NA	25.00	NA	NA	NA	NA	25.00	NA	33.33	NA	18.18	NA	26.83	33.33	20.00	NA	40.00	25.00	20.83	36.67	30.00	20.00	28.12	15.38	30.77	45.83	32.26	45.45	48.00	19.23	25.00	33.33	8.33	0.313334	1.000000
N	alternative_donor	AUP1,DPP4	chr2	-	chr2:74756063-74756258	chr2:74756063-74756254		chr2:74756255-74756258	chr2:74756258-74756259		19.30	21.05	22.95	12.50	8.57	NA	1.29	1.06	4.00	1.87	1.65	1.06	2.58	0.00	3.17	2.99	3.88	0.00	6.25	9.09	7.69	20.00	23.61	21.05	NA	9.80	18.18	7.69	10.11	11.54	18.75	22.03	10.53	17.78	16.98	15.28	6.25	9.45	3.20	0.793306	0.924933
N	alternative_acceptor	RPS6KB2	chr11	+	chr11:67201529-67201668	chr11:67201529-67201641		chr11:67201642-67201668	chr11:67201668-67201669		1.75	0.00	4.17	3.23	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	1.28	0.00	2.78	0.00	3.23	0.00	0.00	4.17	1.52	5.56	2.27	1.56	0.00	0.00	5.45	2.00	0.00	0.00	0.00	0.852329	0.947480
K	intron_retention	SLC7A7	chr14	-	chr14:23243326-23243562				chr14:23243325-23243326;chr14:23243562-23243563		3.36	5.67	7.47	6.52	5.11	0.00	0.34	0.42	0.00	0.00	0.80	0.00	0.77	0.18	1.33	1.64	0.52	0.00	4.44	4.33	2.60	5.17	5.49	4.84	5.26	2.46	3.42	3.95	2.97	1.46	4.14	4.46	3.88	5.16	4.73	2.17	4.16	2.91	-1.25	0.510045	1.000000
K	jcn_only_AA	FDXR	chr17	-	chr17:72863021-72868160;chr17:72862999-72868160	chr17:72863002-72868160		chr17:72862999-72863001;chr17:72863002-72863020	chr17:72862998-72862999;chr17:72863001-72863002		14.29	10.34	15.38	NA	NA	NA	12.00	NA	13.33	NA	16.67	NA	13.79	10.00	15.79	NA	NA	NA	8.33	16.67	18.75	NA	NA	NA	0.00	NA	18.42	NA	NA	NA	11.54	13.04	10.34	NA	27.78	10.00	10.34	12.91	2.57	0.144167	0.663989
K	intron_retention	HSPH1	chr13	-	chr13:31711255-31711504				chr13:31711254-31711255;chr13:31711504-31711505		91.18	96.12	100.00	92.50	94.05	89.80	96.36	90.48	92.59	92.86	94.44	88.24	91.04	93.18	100.00	89.86	100.00	NA	94.12	100.00	98.11	93.33	94.17	94.29	100.00	100.00	100.00	91.49	98.08	94.87	100.00	100.00	100.00	90.91	95.74	93.94	96.24	96.59	0.35	0.989173	1.000000
K	intron_retention	MALAT1	chr11	+	chr11:65266777-65267089				chr11:65266776-65266777;chr11:65267089-65267090		93.90	94.44	94.38	88.17	90.00	87.98	79.17	91.67	90.10	82.93	100.00	97.44	94.83	91.25	91.43	88.00	85.87	91.89	75.00	80.00	79.82	89.83	85.20	84.25	91.85	95.36	94.05	87.16	86.17	83.84	88.24	79.55	80.00	94.88	91.43	92.96	85.92	91.46	5.54	0.520637	1.000000
K	intron_retention	GAS5	chr1	-	chr1:173833843-173834366				chr1:173833842-173833843;chr1:173834366-173834367		7.41	3.11	4.55	2.44	3.23	2.68	1.49	0.00	1.96	4.76	6.56	0.00	4.84	0.00	0.00	6.67	14.29	15.38	2.00	5.00	3.16	7.50	6.84	10.53	0.00	0.00	5.26	7.27	5.95	6.06	14.63	10.34	3.03	7.55	8.70	6.67	2.51	2.50	-0.01	0.707302	1.000000
N	jcn_only_AA	PITRM1	chr10	-	chr10:3183930-3185580;chr10:3182958-3185580	chr10:3183005-3185580		chr10:3182958-3183004;chr10:3183005-3183929	chr10:3182957-3182958;chr10:3183004-3183005		100.00	100.00	96.55	88.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	98.25	96.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	93.33	100.00	95.92	100.00	100.00	100.00	90.32	100.00	100.00	100.00	94.38	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	HNRNPH3	chr10	+	chr10:70101609-70101734	chr10:70101609-70101694		chr10:70101695-70101734	chr10:70101734-70101735		2.74	0.00	2.83	2.00	0.83	2.25	0.00	0.00	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	2.06	2.24	1.27	0.81	1.04	2.38	2.38	4.12	1.82	1.29	0.72	7.27	5.85	4.85	1.11	1.45	3.12	1.00	2.22	1.22	0.534287	0.815239
N	cassette	TYMP	chr22	-	chr22:50965168-50967924;chr22:50965168-50965845;chr22:50965168-50966016;chr22:50965168-50968332	chr22:50965168-50965593;chr22:50965713-50967924,chr22:50965713-50965845,chr22:50965713-50966016,chr22:50965713-50968332		chr22:50965594-50965712			73.07	45.92	59.81	56.61	45.63	66.27	94.64	93.45	95.54	95.02	94.88	97.05	95.85	90.89	92.99	95.42	93.98	97.98	65.23	76.87	76.46	66.28	58.28	78.55	62.48	81.65	76.44	81.57	71.93	85.69	71.75	68.49	51.04	63.81	61.37	79.31	63.86	79.26	15.41	0.245308	0.709176
N	alternative_donor	IFNAR2	chr21	+	chr21:34617380-34619022	chr21:34618788-34619022		chr21:34617380-34618787	chr21:34617379-34617380		2.08	3.12	4.82	NA	0.00	0.00	1.56	2.86	3.36	1.50	0.65	1.81	1.01	1.61	2.54	0.00	0.45	1.31	0.00	2.38	0.00	3.12	2.13	3.33	NA	6.25	2.78	0.00	3.23	0.00	3.23	1.61	0.00	0.00	0.00	2.83	1.01	2.62	1.61	0.058605	0.421463
N	jcn_only_AD	NADSYN1	chr11	+	chr11:71188485-71189440;chr11:71185573-71189440;chr11:71189351-71189440	chr11:71185570-71189440					0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	NA	8.33	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	PANK2	chr20	+	chr20:3899444-3903890				chr20:3899443-3899444;chr20:3903890-3903891		11.11	4.65	8.89	11.11	6.38	7.14	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	3.03	0.00	0.00	0.00	18.03	12.16	3.28	31.25	17.95	20.00	4.69	3.39	2.38	5.88	2.50	4.55	1.61	2.67	2.22	9.09	7.14	7.89	4.11	2.50	-1.61	0.736407	1.000000
K	intron_retention	RNF123	chr3	+	chr3:49758328-49758452				chr3:49758327-49758328;chr3:49758452-49758453		15.15	7.14	9.52	15.38	5.56	0.00	26.32	NA	6.67	23.53	30.43	25.00	35.00	20.00	15.79	54.55	16.13	25.00	5.41	12.00	7.32	43.75	20.00	50.00	12.50	18.18	6.98	30.00	16.67	44.44	7.41	8.16	2.00	8.70	15.38	25.71	9.82	15.15	5.33	0.932140	1.000000
K	intron_retention		chr22	-	chr22:50969725-50969998				chr22:50969724-50969725;chr22:50969998-50969999		71.43	83.33	77.78	90.91	64.29	85.71	NA	27.45	30.77	NA	NA	NA	30.77	37.10	49.06	NA	23.08	36.36	61.11	70.37	60.78	NA	61.11	NA	77.42	61.39	81.08	89.47	64.71	73.91	53.85	69.51	58.82	85.00	78.57	85.71	61.11	57.62	-3.49	0.994801	1.000000
N	alternative_acceptor	SMCHD1	chr18	+	chr18:2796520-2800520;chr18:2796520-2799278	chr18:2796520-2802525		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		95.31	100.00	93.10	NA	100.00	NA	100.00	96.88	95.12	100.00	100.00	100.00	100.00	98.15	94.59	100.00	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	96.39	100.00	100.00	100.00	100.00	100.00	95.24	100.00	95.00	NA	94.74	100.00	96.63	-3.37	0.011188	0.475629
N	alternative_donor	NUBP1	chr16	+	chr16:10855269-10855613	chr16:10855332-10855613		chr16:10855269-10855331	chr16:10855268-10855269		100.00	93.55	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	75.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.256164	0.625575
N	alternative_donor	NCK1	chr3	+	chr3:136665138-136667100	chr3:136665893-136667100		chr3:136665138-136665892	chr3:136665137-136665138		2.78	5.56	3.08	NA	0.00	NA	0.00	0.00	0.87	0.00	0.82	0.00	0.00	0.00	1.05	0.00	0.00	0.00	NA	1.56	0.00	0.00	2.27	5.56	NA	1.14	1.64	0.00	0.00	0.00	1.67	1.83	0.00	2.17	2.67	1.64	0.00	1.35	1.35	0.898993	0.977754
N	alternative_donor		chr1	-	chr1:226030545-226034538	chr1:226030545-226034180		chr1:226034181-226034538	chr1:226034538-226034539		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	94.12	85.71	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	jcn_only_AA	STAC3	chr12	-	chr12:57637991-57638097	chr12:57638009-57638097		chr12:57637991-57638008	chr12:57637990-57637991		96.30	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.85	100.00	98.31	100.00	100.00	100.00	100.00	97.89	100.00	100.00	100.00	100.00	94.00	94.59	94.92	95.83	100.00	100.00	100.00	98.94	-1.06	0.669891	0.853918
N	jcn_only_AD	TACC1	chr8	+	chr8:38697786-38699804	chr8:38699008-38699804		chr8:38697786-38699007	chr8:38697785-38697786		0.00	0.00	3.70	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	11.11	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	5.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	HNRNPH1	chr5	-	chr5:179041961-179042546				chr5:179041960-179041961;chr5:179042546-179042547		9.38	5.07	4.63	2.97	1.78	2.44	0.00	0.00	0.00	0.90	1.08	0.00	0.67	0.00	1.46	0.00	0.00	0.00	2.70	3.57	2.90	4.17	2.85	2.33	2.78	1.37	2.34	1.71	1.36	1.17	12.80	6.15	8.14	4.57	3.03	2.80	2.74	2.47	-0.27	0.803378	1.000000
K	jcn_only_AA	AP2A2	chr11	+	chr11:984754-985434	chr11:984754-985431		chr11:985432-985434	chr11:985434-985435		16.67	28.12	23.81	NA	20.59	NA	26.56	28.57	24.14	23.68	26.24	27.27	28.68	24.53	12.90	25.00	25.97	18.52	27.27	39.53	NA	22.22	30.00	40.00	15.15	17.86	25.49	38.10	24.73	NA	52.63	35.48	33.33	34.38	24.74	32.35	27.70	26.55	-1.14	0.594432	0.812401
N	jcn_only_AD	SMS	chrX	+	chrX:21985164-21985313;chrX:21959486-21985313	chrX:21958992-21985313		chrX:21958992-21959485;chrX:21959486-21985163	chrX:21958991-21958992;chrX:21959485-21959486		100.00	100.00	100.00	100.00	100.00	100.00	99.35	100.00	100.00	99.05	100.00	99.54	100.00	100.00	100.00	100.00	100.00	99.39	NA	100.00	100.00	100.00	98.73	100.00	90.91	100.00	100.00	100.00	100.00	99.56	100.00	100.00	100.00	99.08	98.62	100.00	100.00	100.00	0.00	0.337640	0.657607
N	cassette	AD000671.6,IGFLR1	chr19	-	chr19:36230528-36231924;chr19:36230671-36231882;chr19:36230671-36231924;chr19:36230990-36231924;chr19:36230988-36231924;chr19:36230990-36231882	chr19:36230990-36231280,chr19:36230988-36231280,chr19:36230671-36231280,chr19:36230528-36231280;chr19:36231466-36231882,chr19:36231466-36231924		chr19:36231281-36231465			16.83	7.08	19.38	7.96	8.29	4.12	34.48	38.64	40.26	38.81	35.34	36.36	36.84	38.30	31.52	32.79	36.88	39.47	7.08	20.00	16.19	9.00	10.84	11.29	6.56	28.38	21.58	21.33	18.48	22.63	17.11	22.22	6.27	10.64	12.89	12.62	7.08	24.19	17.11	0.202446	0.709176
N	jcn_only_AA	TNFRSF10B	chr8	-	chr8:22880498-22881700;chr8:22881447-22881700	chr8:22880468-22881700		chr8:22880468-22880497;chr8:22880498-22881446	chr8:22880467-22880468;chr8:22880497-22880498		0.00	0.00	0.00	0.00	NA	0.00	5.77	0.00	1.06	4.08	0.00	0.00	3.12	0.00	0.00	4.88	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.197610	0.663989
N	cassette	EIF3E	chr8	-	chr8:109215733-109240495	chr8:109215733-109226835;chr8:109226946-109240495		chr8:109226836-109226945			100.00	100.00	98.57	98.41	99.31	96.72	98.23	96.67	96.19	97.89	98.20	98.75	100.00	96.67	98.96	99.11	97.10	100.00	97.56	100.00	96.47	100.00	100.00	98.77	100.00	90.91	98.89	100.00	100.00	100.00	91.30	96.92	97.96	100.00	100.00	98.94	99.12	96.67	-2.45	0.127687	0.709176
K	jcn_only_AD	SMIM12	chr1	-	chr1:35321584-35325252;chr1:35321584-35325055	chr1:35321584-35325277		chr1:35325056-35325252;chr1:35325253-35325277	chr1:35325252-35325253;chr1:35325277-35325278		81.25	85.71	100.00	100.00	100.00	100.00	100.00	92.86	87.50	89.09	95.92	87.23	89.47	88.10	89.80	83.12	86.96	93.94	100.00	88.89	91.67	91.67	80.00	89.29	NA	88.89	100.00	93.55	90.48	100.00	100.00	100.00	100.00	85.71	95.00	95.00	100.00	88.89	-11.11	0.241994	0.657607
K	cassette	RWDD1	chr6	+	chr6:116892819-116895220;chr6:116892819-116901457	chr6:116892819-116894020;chr6:116894149-116901457,chr6:116894149-116895220		chr6:116894021-116894148			0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.56	0.00	0.00	0.00	5.56	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	alternative_acceptor	MTCH1	chr6	-	chr6:36937560-36937814;chr6:36937292-36937814	chr6:36936751-36937814		chr6:36936751-36937291;chr6:36937292-36937559	chr6:36936750-36936751;chr6:36937291-36937292		81.63	84.78	77.69	78.65	81.00	90.00	94.90	95.59	94.44	93.57	94.92	96.05	92.56	93.08	87.23	88.89	93.27	96.25	87.34	86.38	87.65	76.62	77.82	74.87	75.00	82.22	76.77	75.00	76.21	81.99	87.20	83.17	87.85	80.74	80.77	82.78	87.59	86.79	-0.81	0.870943	0.956197
K	intron_retention	ADAM8	chr10	-	chr10:135084310-135084384				chr10:135084309-135084310;chr10:135084384-135084385		3.49	3.33	6.29	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	1.11	0.00	0.00	0.00	4.29	1.92	0.00	13.89	0.00	0.00	2.22	3.79	0.00	3.85	0.00	6.38	8.57	6.67	4.00	8.00	1.54	0.00	2.86	2.86	0.820170	1.000000
K	intron_retention	AKT1	chr14	-	chr14:105241545-105241988				chr14:105241544-105241545;chr14:105241988-105241989		2.94	3.12	3.51	NA	7.69	NA	0.83	0.00	0.00	0.00	0.00	0.00	0.78	0.00	0.00	1.04	0.00	0.00	NA	2.56	0.00	0.00	3.12	0.00	0.00	2.00	1.67	0.00	4.00	3.57	0.00	3.03	NA	5.13	0.00	3.85	0.80	1.00	0.20	0.538508	1.000000
N	alternative_donor	ADAM28	chr8	+	chr8:24205893-24207376;chr8:24201102-24207376	chr8:24201098-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		96.05	96.83	94.47	94.44	95.92	NA	97.44	96.30	94.44	88.46	97.30	66.67	97.37	100.00	84.21	95.24	96.15	64.71	94.87	96.30	93.33	97.14	96.59	93.22	NA	95.00	94.52	94.12	100.00	85.71	94.64	93.41	97.78	98.18	97.22	95.83	97.37	96.17	-1.20	0.623832	0.829375
N	cassette	DNAJC4	chr11	+	chr11:63999437-64000172;chr11:63999437-64000175	chr11:63999437-63999981;chr11:64000087-64000172,chr11:64000087-64000175		chr11:63999982-64000086			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	97.22	94.12	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	SCNM1	chr1	+	chr1:151138680-151138946	chr1:151138729-151138946		chr1:151138680-151138728	chr1:151138679-151138680		20.00	13.79	12.82	NA	8.00	10.00	6.25	11.11	12.82	14.29	8.33	16.67	11.54	3.57	17.95	12.00	10.00	13.33	20.00	21.74	18.18	NA	12.90	8.33	NA	10.42	18.92	13.33	8.00	8.70	19.44	16.33	22.22	13.64	18.18	11.54	13.79	15.28	1.49	0.928246	0.984606
K	intron_retention	SUGP2	chr19	-	chr19:19101959-19104456				chr19:19101958-19101959;chr19:19104456-19104457		65.38	36.54	65.71	42.86	38.98	40.00	NA	NA	NA	NA	NA	NA	73.33	NA	NA	NA	NA	NA	36.49	58.33	36.17	57.14	45.45	41.67	44.44	58.33	34.38	50.00	54.29	56.25	44.44	29.41	30.88	44.44	38.46	40.00	36.54	58.33	21.79	0.261113	1.000000
K	jcn_only_AD	NDUFAF3	chr3	+	chr3:49058833-49059778;chr3:49059655-49059778	chr3:49059218-49059778		chr3:49058833-49059217;chr3:49059218-49059654	chr3:49058832-49058833;chr3:49059217-49059218		2.53	0.00	0.00	0.00	2.86	0.00	2.19	3.12	1.06	0.86	1.36	0.00	0.78	0.00	2.25	2.11	2.19	1.04	6.12	3.70	1.06	0.00	1.10	0.00	0.00	3.64	3.00	0.00	0.00	0.00	1.79	2.99	2.22	5.13	1.89	4.76	1.48	2.83	1.34	0.613040	0.809875
K	intron_retention	EDC4	chr16	+	chr16:67917635-67917858				chr16:67917634-67917635;chr16:67917858-67917859		4.17	6.06	7.04	4.55	3.60	5.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.52	14.81	6.67	7.69	4.76	10.00	4.92	0.00	6.10	0.00	3.51	2.63	21.62	13.25	7.86	8.57	3.70	7.14	5.49	2.08	-3.41	0.970288	1.000000
N	alternative_donor	AHNAK	chr11	-	chr11:62259304-62284481;chr11:62259304-62301132	chr11:62259304-62302474		chr11:62284482-62301132;chr11:62301133-62302474	chr11:62301132-62301133;chr11:62302474-62302475		48.61	65.55	19.51	89.04	85.21	95.24	2.36	4.92	NA	4.15	4.77	3.63	2.79	5.48	3.85	2.96	3.14	5.03	80.85	25.86	69.23	22.86	23.96	13.77	74.59	37.74	35.29	20.88	21.58	27.16	65.79	41.18	87.50	20.42	16.20	24.22	70.07	31.80	-38.27	0.297724	0.650093
K	intron_retention		chr19	+	chr19:18699888-18700222				chr19:18699887-18699888;chr19:18700222-18700223		37.50	30.36	47.62	16.67	30.00	11.54	8.33	0.00	20.00	12.20	10.42	7.32	11.54	30.00	25.00	6.00	6.67	0.00	25.90	46.15	27.12	15.79	29.33	11.76	35.71	44.44	42.11	20.00	24.00	10.34	10.00	47.62	28.23	26.92	38.71	19.35	27.06	33.75	6.69	0.683253	1.000000
K	cassette	PPP1CA	chr11	-	chr11:67168391-67169198	chr11:67168391-67168538;chr11:67168671-67169198		chr11:67168539-67168670			88.69	95.00	89.25	84.38	82.30	80.00	97.19	97.22	96.65	96.50	97.96	97.74	98.11	97.24	97.09	96.17	97.49	97.50	87.76	91.67	92.55	80.41	86.58	86.59	100.00	94.29	89.74	84.04	90.85	93.75	93.14	90.32	85.25	86.96	86.93	87.88	96.09	93.72	-2.38	0.951185	0.987421
N	alternative_acceptor	LILRB4	chr19	+	chr19:55178201-55179088;chr19:55178201-55178815;chr19:55178201-55178261;chr19:55178201-55178293	chr19:55178201-55179085		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		31.58	41.84	28.32	29.21	33.77	30.05	33.00	30.55	29.54	29.73	33.33	29.98	33.53	31.68	30.00	29.59	33.22	26.85	28.57	27.46	29.49	27.79	27.93	26.00	28.17	30.68	33.50	30.84	35.26	30.73	30.03	31.49	32.39	29.41	29.02	27.46	32.70	30.62	-2.08	0.266452	0.709013
N	alternative_acceptor	INTS4	chr11	-	chr11:77590174-77594877	chr11:77592602-77594877		chr11:77590174-77592601	chr11:77590173-77590174		5.56	0.00	10.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	7.14	0.00	NA	4.17	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.76	0.00	0.00	6.25	7.14	0.00	0.00	0.00	0.182185	0.660713
K	cassette	PFDN5	chr12	+	chr12:53689424-53691633	chr12:53689424-53690237;chr12:53690336-53691633		chr12:53690238-53690335			3.42	4.42	5.99	4.40	6.40	4.01	1.43	4.35	8.97	0.74	2.26	2.68	2.72	2.27	4.76	2.08	2.92	0.98	4.51	4.26	4.70	1.94	2.49	2.56	6.69	9.23	6.43	1.92	3.54	0.66	5.16	6.59	4.63	2.87	4.46	2.67	4.46	4.30	-0.16	0.572558	0.830407
N	jcn_only_AA	IL4I1	chr19	-	chr19:50388144-50394227;chr19:50393698-50394227;chr19:50393755-50394227;chr19:50393731-50394227	chr19:50393858-50394227		chr19:50388144-50393697;chr19:50393698-50393730;chr19:50393731-50393754;chr19:50393755-50393857	chr19:50388143-50388144;chr19:50393697-50393698;chr19:50393730-50393731;chr19:50393754-50393755		97.98	100.00	97.53	97.37	96.84	94.94	100.00	98.12	97.99	94.90	100.00	98.46	100.00	98.27	98.03	94.69	96.15	97.04	100.00	98.42	98.54	97.78	96.60	97.98	100.00	98.48	97.66	92.59	97.56	95.05	98.46	97.94	100.00	100.00	93.84	97.73	100.00	98.34	-1.66	0.000005	0.005569
K	cassette	GMIP	chr19	-	chr19:19746379-19747515	chr19:19746379-19746452;chr19:19746531-19747515		chr19:19746453-19746530			64.29	50.00	70.21	NA	75.00	NA	81.69	79.37	68.33	75.93	76.27	85.19	83.00	73.08	72.73	74.03	81.36	89.66	NA	61.90	84.62	87.50	70.27	66.67	55.56	77.97	70.45	68.42	73.08	66.67	75.86	75.76	NA	73.68	68.42	82.61	68.62	74.47	5.84	0.648101	0.870529
K	intron_retention	PIN1	chr19	+	chr19:9959872-9960208				chr19:9959871-9959872;chr19:9960208-9960209		100.00	95.27	100.00	100.00	100.00	98.88	89.80	100.00	92.31	86.21	91.30	91.67	90.32	100.00	97.22	100.00	100.00	90.48	100.00	100.00	96.63	92.59	93.24	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	91.11	100.00	92.86	93.62	100.00	97.63	100.00	2.37	0.181661	1.000000
K	intron_retention	SUMF2	chr7	+	chr7:56141912-56142278				chr7:56141911-56141912;chr7:56142278-56142279		0.00	0.00	3.28	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.52	0.00	1.75	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.00	-0.26	0.527263	1.000000
K	intron_retention		chr12	-	chr12:57642587-57642823				chr12:57642586-57642587;chr12:57642823-57642824		8.65	7.27	20.00	0.00	0.00	0.00	0.00	3.25	3.66	0.00	0.00	0.00	0.00	4.32	5.88	0.00	0.00	0.00	4.26	5.56	5.08	0.00	0.00	0.00	0.00	8.82	10.71	4.17	2.99	2.63	8.24	6.00	3.12	5.56	5.00	2.17	1.56	6.90	5.34	0.171139	1.000000
N	alternative_donor	NAGK	chr2	+	chr2:71302737-71303733;chr2:71302773-71303733	chr2:71302741-71303733		chr2:71302737-71302740;chr2:71302741-71302772	chr2:71302736-71302737;chr2:71302740-71302741		8.45	3.37	8.33	9.52	5.63	8.82	7.56	7.24	2.27	7.14	4.92	3.12	4.76	7.88	5.41	7.27	7.50	3.70	8.75	15.85	10.00	3.85	7.50	8.82	6.49	9.09	6.45	5.26	4.55	4.11	14.29	11.54	10.39	4.88	4.84	3.33	7.03	8.77	1.74	0.081438	0.470724
N	alternative_last_exon	FCAR	chr19	+	chr19:2476629-2477485	chr19:2476629-2477026	chr19:2477486-2478257	chr19:2477027-2477434			99.29	90.48	98.92	99.50	95.83	99.62	100.00	98.63	100.00	99.40	97.06	99.73	100.00	100.00	100.00	100.00	95.83	99.60	95.00	98.84	98.33	99.63	97.50	99.81	83.33	98.41	98.65	99.38	92.31	99.76	99.34	99.08	92.00	99.52	96.55	100.00	93.50	99.06	5.56	0.082498	0.286815
N	alternative_acceptor	CUL4A	chr13	+	chr13:113909440-113914920	chr13:113909440-113913603		chr13:113913604-113914920	chr13:113914920-113914921		12.00	10.53	6.82	14.29	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	1.72	0.00	0.00	18.18	4.17	0.00	4.26	7.14	4.35	NA	7.14	7.14	2.38	5.00	8.70	8.33	6.06	25.00	6.90	7.50	5.13	10.53	5.65	-4.88	0.349007	0.709013
K	intron_retention	NUMA1	chr11	-	chr11:71715863-71716278				chr11:71715862-71715863;chr11:71716278-71716279		5.63	2.02	3.54	0.00	0.00	0.00	1.33	0.00	4.44	0.94	2.78	0.00	1.19	1.64	5.88	1.85	1.45	0.00	0.00	1.96	0.00	2.13	5.38	0.00	0.00	1.33	1.64	0.00	4.00	0.00	1.96	3.85	0.00	0.00	3.90	3.39	0.59	1.80	1.20	0.395368	1.000000
K	alternative_acceptor	CHD4	chr12	-	chr12:6711321-6711541	chr12:6711342-6711541		chr12:6711321-6711341	chr12:6711320-6711321		50.00	36.36	34.88	NA	NA	NA	42.55	36.11	40.54	34.29	40.00	38.24	34.62	35.48	30.95	34.29	40.58	34.48	NA	30.00	NA	NA	50.00	50.00	50.00	33.33	41.67	NA	NA	NA	NA	NA	NA	26.32	30.00	33.33	39.45	35.48	-3.98	0.451691	0.756508
K	intron_retention	ATP5B	chr12	-	chr12:57036495-57037204				chr12:57036494-57036495;chr12:57037204-57037205		94.03	89.09	94.23	92.31	89.06	71.43	88.31	90.00	87.78	85.57	91.74	89.16	88.57	90.00	90.11	85.51	88.39	86.76	88.89	94.74	90.74	91.86	92.80	92.22	83.33	88.89	89.16	87.93	89.66	89.09	91.14	88.89	94.87	91.89	91.91	87.84	88.73	90.57	1.84	0.737817	1.000000
N	jcn_only_AA	MICAL1	chr6	-	chr6:109767105-109767338;chr6:109767156-109767338;chr6:109767079-109767338	chr6:109767066-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		100.00	93.20	92.73	91.18	87.76	92.86	81.25	86.05	83.33	92.31	88.24	100.00	90.24	88.64	100.00	81.82	95.65	NA	88.89	89.47	85.48	87.50	89.47	100.00	87.85	91.03	97.22	72.73	88.24	89.47	89.80	100.00	94.23	94.12	90.91	90.00	89.56	89.63	0.07	0.580334	0.804098
K	intron_retention	OS9	chr12	+	chr12:58114047-58114188				chr12:58114046-58114047;chr12:58114188-58114189		5.17	5.59	8.06	5.69	3.79	3.73	0.37	1.00	0.00	0.00	0.85	0.48	0.76	1.00	1.24	0.00	0.42	0.60	3.03	4.71	3.11	5.26	2.33	8.04	3.62	3.48	3.60	3.73	2.76	3.77	5.68	7.77	7.47	6.11	5.63	7.11	3.33	4.09	0.77	0.897985	1.000000
K	intron_retention		chr22	+	chr22:45131043-45132651				chr22:45131042-45131043;chr22:45132651-45132652		3.85	0.00	0.00	3.12	NA	8.47	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.13	0.00	1.92	3.12	0.00	8.70	2.87	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	cassette	C10orf54	chr10	-	chr10:73515224-73533114	chr10:73515224-73520624;chr10:73520682-73533114		chr10:73520625-73520681			95.31	100.00	94.59	NA	100.00	NA	100.00	100.00	96.43	100.00	100.00	100.00	98.15	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.552453	0.820483
K	cassette	TRPM2	chr21	+	chr21:45846620-45855013	chr21:45846620-45846892;chr21:45846995-45855013		chr21:45846893-45846994			56.82	52.71	56.25	64.29	50.00	NA	86.84	81.25	NA	NA	81.82	NA	83.05	69.23	NA	81.82	80.00	NA	63.53	63.89	62.07	46.67	52.63	56.52	60.00	71.43	62.50	72.22	55.00	61.11	80.00	72.00	64.95	56.41	65.22	50.00	64.24	70.33	6.09	0.780565	0.934744
K	intron_retention	CDC16	chr13	+	chr13:115037957-115038038				chr13:115037956-115037957;chr13:115038038-115038039		82.14	70.81	77.50	74.07	65.18	65.56	66.67	78.57	77.27	88.24	76.19	NA	85.19	100.00	74.07	78.26	82.14	NA	74.59	84.21	84.21	65.38	68.42	73.68	63.07	84.62	79.17	62.50	83.67	73.08	78.57	86.11	76.27	72.73	73.08	77.14	72.70	83.17	10.47	0.089894	1.000000
N	jcn_only_AA	CD276	chr15	+	chr15:73996814-74000684;chr15:73996814-74000679	chr15:73996814-74000703		chr15:74000680-74000684;chr15:74000685-74000703	chr15:74000684-74000685;chr15:74000703-74000704		0.00	0.00	0.00	0.00	3.39	8.70	4.63	0.00	0.00	0.00	3.68	0.00	0.00	0.00	0.00	3.06	5.04	6.22	0.00	0.00	0.00	0.00	4.30	2.67	0.00	0.00	0.00	1.71	0.00	0.00	4.62	4.55	0.00	5.49	3.82	3.52	0.00	0.00	0.00	0.998810	0.999708
N	jcn_only_AA	PEF1	chr1	-	chr1:32096352-32098095;chr1:32096316-32098095;chr1:32096322-32098095;chr1:32096444-32098095	chr1:32096334-32098095		chr1:32096316-32096321;chr1:32096322-32096333;chr1:32096334-32096351;chr1:32096352-32096443	chr1:32096315-32096316;chr1:32096321-32096322;chr1:32096333-32096334;chr1:32096351-32096352		0.00	0.00	0.00	0.00	4.08	7.14	0.00	3.08	2.60	2.44	3.09	2.78	0.00	0.00	0.00	2.82	0.00	1.82	9.52	0.00	2.00	0.00	1.75	0.00	NA	0.00	0.00	4.26	2.13	0.00	3.70	2.74	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.718942	0.875250
K	intron_retention	AP5Z1	chr7	+	chr7:4826060-4827264				chr7:4826059-4826060;chr7:4827264-4827265		12.24	4.65	8.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	6.25	7.14	4.76	2.86	1.67	9.68	12.50	7.94	9.09	2.86	2.17	4.65	17.95	11.90	0.00	5.17	6.52	8.00	2.33	7.54	5.21	0.575679	1.000000
N	jcn_only_AD	PARL	chr3	-	chr3:183562115-183580540;chr3:183562115-183574219;chr3:183562115-183595939	chr3:183562115-183580484		chr3:183574220-183580484;chr3:183580485-183580540;chr3:183580541-183595939	chr3:183580484-183580485;chr3:183580540-183580541;chr3:183595939-183595940		3.85	4.35	5.17	0.00	1.75	NA	15.38	7.69	12.00	2.70	6.56	12.00	10.64	NA	4.55	0.00	2.78	5.00	0.00	8.33	5.88	3.70	4.23	6.06	0.00	0.00	9.26	0.00	7.35	4.00	0.00	10.81	8.57	2.22	3.70	7.89	6.46	3.85	-2.61	0.437104	0.696909
N	coord_cassette	ACAA1	chr3	-	chr3:38167373-38169276	chr3:38167373-38167652;chr3:38167833-38168000;chr3:38168192-38169276		chr3:38167653-38167832;chr3:38168001-38168191			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	95.56	100.00	94.44	100.00	100.00	100.00	100.00	0.00	0.183551	0.643829
N	jcn_only_AD	NPEPL1,STX16-NPEPL1	chr20	+	chr20:57282257-57287534	chr20:57287347-57287534		chr20:57282257-57287346	chr20:57282256-57282257		7.41	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.182287	0.657607
K	intron_retention		chr12	-	chr12:7519928-7520682				chr12:7519927-7519928;chr12:7520682-7520683		0.77	0.17	0.65	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.95	NA	NA	0.00	0.00	0.00	6.18	7.69	1.14	6.35	6.16	7.79	2.18	0.00	1.10	0.00	0.00	0.00	0.00	1.28	0.58	0.00	0.74	1.78	0.76	0.39	-0.38	0.984804	1.000000
K	alternative_last_exon	ZDHHC20	chr13	-	chr13:21950795-21955572	chr13:21952878-21955572	chr13:21946712-21950794	chr13:21952800-21952877			6.06	0.00	13.70	NA	0.00	NA	18.75	4.76	6.98	9.09	6.94	6.06	6.67	16.67	17.65	17.86	4.00	13.64	NA	3.70	5.56	NA	0.00	0.00	NA	0.00	5.66	NA	4.55	NA	6.25	7.32	0.00	3.85	8.82	13.04	3.33	5.41	2.08	0.982525	0.987836
N	jcn_only_AA	CNOT10	chr3	+	chr3:32806302-32811378;chr3:32806302-32806541	chr3:32806302-32809497					0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	7.14	NA	0.00	NA	0.00	7.69	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_donor		chr2	-	chr2:74604854-74605303	chr2:74604854-74605126		chr2:74605127-74605303	chr2:74605303-74605304		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
N	alternative_acceptor	RPA3	chr7	-	chr7:7678742-7679950	chr7:7678776-7679950		chr7:7678742-7678775	chr7:7678741-7678742		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	92.86	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	alternative_donor	ARHGAP27,STAT5B	chr17	-	chr17:43482473-43483212	chr17:43482473-43483041		chr17:43483042-43483212	chr17:43483212-43483213		100.00	100.00	95.00	NA	NA	NA	100.00	97.92	NA	NA	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.75	NA	NA	100.00	100.00	100.00	96.00	93.33	NA	NA	NA	100.00	80.00	NA	NA	100.00	96.30	100.00	98.96	-1.04	0.111648	0.520337
K	jcn_only_AA	ASCC2	chr22	-	chr22:30184842-30202785	chr22:30202543-30202785		chr22:30184842-30202542	chr22:30184841-30184842		96.00	100.00	97.83	NA	79.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	94.12	100.00	100.00	100.00	35.29	89.66	100.00	86.67	94.64	100.00	NA	96.15	100.00	100.00	100.00	100.00	94.74	90.91	47.62	100.00	95.35	100.00	97.73	96.08	-1.66	0.235795	0.663989
N	alternative_donor	MLEC	chr12	+	chr12:121125512-121131893;chr12:121130932-121131893	chr12:121125335-121131893		chr12:121125335-121125511;chr12:121125512-121130931	chr12:121125334-121125335;chr12:121125511-121125512		100.00	100.00	100.00	NA	100.00	NA	97.14	100.00	100.00	100.00	97.78	100.00	96.81	100.00	100.00	100.00	99.17	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	92.31	96.15	100.00	100.00	0.00	0.175481	0.563271
K	intron_retention	PRPF4B	chr6	+	chr6:4063354-4065034				chr6:4063353-4063354;chr6:4065034-4065035		35.14	12.68	41.51	26.32	21.25	24.74	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21.98	39.13	22.45	60.87	34.78	54.17	10.94	38.24	29.17	58.82	38.89	38.64	34.48	34.15	20.88	61.11	50.00	56.67	16.78	36.69	19.91	0.030722	1.000000
K	alternative_acceptor	FAM89B	chr11	+	chr11:65340432-65340872;chr11:65340432-65340833	chr11:65340432-65340823		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		20.83	20.00	18.92	NA	22.22	NA	21.62	15.79	17.39	31.58	16.67	NA	25.00	14.29	23.08	21.05	16.13	NA	27.27	26.09	21.62	NA	38.46	NA	NA	31.58	25.71	18.18	31.58	10.00	25.00	26.67	17.65	23.08	20.00	25.00	21.62	22.91	1.29	0.989166	0.995608
N	jcn_only_AD	VRK3	chr19	-	chr19:50484271-50491628;chr19:50484271-50485124	chr19:50484271-50485074		chr19:50485075-50485124;chr19:50485125-50491628	chr19:50485124-50485125;chr19:50491628-50491629		0.00	0.00	7.50	0.00	4.35	5.26	0.00	0.00	4.76	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.865062	0.930693
K	cassette	PPP6R2	chr22	+	chr22:50874882-50875934	chr22:50874882-50875416;chr22:50875498-50875934		chr22:50875417-50875497			30.95	14.29	27.87	40.00	20.00	27.27	61.29	41.03	38.30	68.18	57.58	66.67	57.89	42.86	38.00	63.64	61.29	71.43	23.08	31.91	39.13	20.69	21.21	37.14	14.29	27.91	24.29	48.15	35.48	45.45	29.17	38.24	11.43	33.33	18.18	31.03	18.68	31.43	12.75	0.725288	0.904118
K	alternative_acceptor	PSENEN	chr19	+	chr19:36236602-36236773	chr19:36236602-36236735		chr19:36236736-36236773	chr19:36236773-36236774		85.11	86.49	92.50	94.12	92.68	100.00	84.21	85.71	87.88	83.78	87.18	87.10	87.76	96.55	92.31	88.89	78.57	91.30	91.67	90.91	86.54	95.65	88.64	80.00	86.67	90.48	87.18	90.62	98.04	79.49	87.80	91.11	88.89	86.11	84.21	86.36	87.22	89.14	1.92	0.392813	0.710846
N	alternative_donor	SLC38A7	chr16	-	chr16:4409623-4410319	chr16:4409623-4410278		chr16:4410279-4410319	chr16:4410319-4410320		92.86	100.00	90.00	100.00	100.00	NA	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.24	92.86	100.00	100.00	97.62	100.00	100.00	95.24	96.30	95.83	100.00	100.00	86.84	92.31	90.91	91.30	100.00	100.00	98.75	94.05	-4.70	0.628060	0.830571
N	cassette	CD300A	chr17	+	chr17:72462883-72473574	chr17:72462883-72470670;chr17:72470825-72473574		chr17:72470671-72470824			95.71	100.00	88.89	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	95.24	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.44	94.87	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	0.00	0.535022	0.809056
K	alternative_acceptor	SLC52A2	chr8	+	chr8:145583084-145583774	chr8:145583084-145583282		chr8:145583283-145583774	chr8:145583774-145583775		90.00	100.00	100.00	100.00	93.33	NA	100.00	96.55	100.00	96.08	94.44	100.00	98.08	94.59	93.85	96.20	96.77	100.00	100.00	100.00	94.44	94.44	95.74	100.00	100.00	100.00	88.89	96.88	92.11	95.65	85.71	93.33	86.67	97.06	94.44	95.45	100.00	95.57	-4.43	0.371464	0.709013
K	intron_retention		chr11	+	chr11:61135471-61136068				chr11:61135470-61135471;chr11:61136068-61136069		11.11	11.76	19.70	3.64	4.17	NA	2.74	3.03	2.13	1.60	0.55	0.00	2.94	1.25	0.00	1.75	1.14	0.00	7.41	11.32	8.51	7.25	5.77	9.09	NA	7.41	11.63	5.56	4.71	3.12	11.93	13.51	6.67	5.45	8.26	5.77	6.67	9.26	2.59	0.811552	1.000000
K	intron_retention	ACOT8	chr20	-	chr20:44472361-44472901				chr20:44472360-44472361;chr20:44472901-44472902		5.88	0.00	23.53	NA	8.33	16.67	0.00	NA	NA	0.00	0.00	NA	3.85	0.00	0.00	NA	7.14	0.00	7.32	NA	5.41	NA	4.76	NA	6.52	23.08	18.75	NA	0.00	0.00	16.67	14.29	4.65	NA	8.33	15.38	4.25	11.28	7.03	0.638625	1.000000
N	cassette	ALDH2	chr12	+	chr12:112204901-112219721;chr12:112193550-112219721	chr12:112193550-112213408,chr12:112204901-112213408;chr12:112213525-112219721		chr12:112213409-112213524			0.00	2.38	5.19	NA	0.00	NA	0.71	0.00	1.68	0.00	0.65	0.00	0.00	0.00	1.69	0.00	0.80	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.82	0.00	1.61	0.00	4.35	4.04	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.903916	0.971172
N	jcn_only_AD	BANP	chr16	+	chr16:88105819-88110195	chr16:88105994-88110195		chr16:88105819-88105993	chr16:88105818-88105819		0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	36.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	jcn_only_AD	THOC7	chr3	-	chr3:63825450-63850312;chr3:63825450-63849179;chr3:63825450-63849447	chr3:63825450-63850053		chr3:63849180-63849447;chr3:63849448-63850053;chr3:63850054-63850312	chr3:63849447-63849448;chr3:63850053-63850054;chr3:63850312-63850313		5.88	0.00	0.00	NA	NA	NA	7.14	0.00	0.00	0.00	0.00	0.00	11.11	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	2.94	0.971340	0.986833
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28847812-28848071	chr16:28847812-28848048		chr16:28848049-28848071	chr16:28848071-28848072		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	95.00	100.00	100.00	100.00	91.67	NA	96.30	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.180594	0.660713
N	alternative_acceptor	SLC6A6,VPS8	chr3	+	chr3:14520694-14523178	chr3:14520694-14521627		chr3:14521628-14523178	chr3:14523178-14523179		3.12	0.00	3.70	0.00	0.00	NA	1.00	1.52	1.52	0.91	1.29	0.00	0.93	1.75	1.56	0.80	1.02	0.00	0.00	3.57	0.00	2.22	4.40	0.00	NA	3.33	2.70	1.92	2.50	0.00	0.00	2.33	0.00	3.08	5.38	1.22	0.00	2.44	2.44	0.021275	0.527491
K	jcn_only_AA	SSR1	chr6	-	chr6:7301602-7303782	chr6:7301806-7303782		chr6:7301602-7301805	chr6:7301601-7301602		98.15	100.00	98.68	NA	93.10	NA	99.37	100.00	99.23	98.28	98.41	97.01	99.40	100.00	99.40	100.00	98.78	100.00	93.33	96.72	95.83	97.30	98.59	98.70	NA	97.59	100.00	95.00	98.08	100.00	100.00	98.55	92.31	98.18	98.65	98.92	99.37	99.08	-0.30	0.341511	0.663989
N	alternative_acceptor	SPG11	chr15	-	chr15:44858208-44858414	chr15:44858330-44858414		chr15:44858208-44858329	chr15:44858207-44858208		1.96	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	3.57	1.59	NA	0.00	NA	0.00	0.00	0.00	10.00	4.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	2.63	3.03	0.00	0.98	0.98	0.087312	0.586065
K	intron_retention	FARSA	chr19	-	chr19:13035622-13035717				chr19:13035621-13035622;chr19:13035717-13035718		0.00	0.00	2.38	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	1.82	2.47	0.00	NA	NA	0.00	0.00	1.54	0.00	8.70	4.65	1.89	0.00	0.00	2.70	0.00	0.00	0.00	0.760771	1.000000
K	intron_retention	PCNXL3	chr11	+	chr11:65403779-65403861				chr11:65403778-65403779;chr11:65403861-65403862		16.67	15.62	17.24	0.00	9.09	18.18	0.00	0.00	5.26	0.00	0.00	NA	0.00	7.69	3.45	7.14	7.14	NA	14.29	29.63	20.00	NA	15.62	NA	NA	17.65	22.58	NA	13.04	9.52	28.95	25.64	25.00	16.67	20.00	13.64	14.29	17.16	2.87	0.873424	1.000000
N	alternative_donor		chr17	-	chr17:8785199-8787768;chr17:8785199-8785357	chr17:8785199-8788023		chr17:8785358-8787768;chr17:8787769-8788023	chr17:8787768-8787769;chr17:8788023-8788024		85.29	58.82	80.95	NA	87.88	NA	96.95	97.10	97.50	97.10	95.75	99.35	95.14	96.24	92.86	96.06	94.95	97.02	NA	90.08	NA	87.41	87.06	86.47	43.75	80.92	83.08	83.78	84.57	91.84	89.74	91.03	NA	80.09	83.46	87.70	76.98	89.91	12.93	0.311004	0.650093
K	intron_retention	CTB-12A17.3	chr19	-	chr19:47112636-47113842				chr19:47112635-47112636;chr19:47113842-47113843		95.88	98.11	100.00	100.00	98.28	100.00	97.49	97.50	94.64	96.38	95.47	95.62	96.81	94.59	97.73	95.92	95.22	98.51	98.56	91.07	98.10	95.00	93.55	93.51	100.00	100.00	100.00	100.00	95.06	90.28	97.96	95.18	98.41	95.24	92.49	94.74	98.26	96.69	-1.57	0.582256	1.000000
N	alternative_donor		chr10	-	chr10:31134503-31137658	chr10:31134503-31137459		chr10:31137460-31137658	chr10:31137658-31137659		100.00	100.00	100.00	100.00	100.00	NA	100.00	95.74	100.00	100.00	100.00	100.00	100.00	100.00	91.67	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.08	100.00	96.67	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	SRRT	chr7	+	chr7:100485481-100485662				chr7:100485480-100485481;chr7:100485662-100485663		9.80	3.85	4.62	1.59	3.28	1.11	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	2.06	5.26	5.71	4.88	4.35	7.41	0.00	3.12	4.69	0.00	2.82	2.22	16.44	9.48	7.94	4.65	4.48	0.00	2.14	4.19	2.05	0.673112	1.000000
N	cassette	TMEM147	chr19	+	chr19:36037488-36038020	chr19:36037488-36037573;chr19:36037711-36038020		chr19:36037574-36037710			95.65	100.00	95.65	95.45	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	100.00	98.55	100.00	100.00	96.55	100.00	96.97	96.77	95.59	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	93.75	95.38	91.49	96.08	95.31	99.23	100.00	0.77	0.442393	0.746613
K	intron_retention	TBC1D17	chr19	+	chr19:50390831-50390974				chr19:50390830-50390831;chr19:50390974-50390975		57.50	4.40	61.36	9.09	11.11	0.00	8.00	86.36	60.00	40.00	40.00	NA	11.11	87.76	68.00	30.77	NA	NA	2.50	50.00	16.13	25.00	31.82	52.00	3.64	72.22	33.33	50.00	5.88	35.29	30.00	16.36	7.79	25.00	48.28	50.00	6.10	64.86	58.77	0.003704	1.000000
N	alternative_first_exon	CFLAR	chr2	+	chr2:201995704-201997751,chr2:201997301-201997751,chr2:201994731-201997751,chr2:201997645-201997751,chr2:201997549-201997751,chr2:201996942-201997751,chr2:201997597-201997751;chr2:201983625-201997751;chr2:201997574-201997751;chr2:201981205-201997751	chr2:201994870-201997751	chr2:201983214-201983624;chr2:201997502-201997573;chr2:201980827-201981204	chr2:201994226-201994869			88.81	87.50	93.19	91.11	83.33	84.06	96.20	92.77	95.63	93.21	94.64	95.08	100.00	94.86	94.72	96.40	92.96	95.45	70.00	88.42	89.58	97.20	92.11	94.20	81.82	92.64	95.96	95.45	96.30	95.84	77.62	86.36	70.00	92.82	97.18	95.23	84.66	90.72	6.06	0.421337	0.568167
K	alternative_acceptor	ALDH16A1	chr19	+	chr19:49968020-49969037	chr19:49968020-49968994		chr19:49968995-49969037	chr19:49969037-49969038		100.00	100.00	100.00	NA	100.00	NA	87.50	94.44	NA	NA	81.82	NA	91.89	90.48	75.00	NA	81.25	NA	90.32	100.00	95.45	NA	92.31	NA	72.73	85.71	75.00	NA	84.21	NA	NA	100.00	86.36	100.00	100.00	81.82	88.91	94.44	5.53	0.224321	0.676947
K	intron_retention		chr3	-	chr3:49147796-49147876				chr3:49147795-49147796;chr3:49147876-49147877		6.38	0.00	1.89	0.00	2.27	0.00	0.00	5.88	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	7.14	2.38	14.29	4.88	13.64	3.23	0.00	2.44	0.00	0.00	2.78	10.87	11.54	4.84	7.41	3.45	3.92	1.28	6.13	4.85	0.588718	1.000000
K	intron_retention	ATP2C1	chr3	+	chr3:130720189-130734995				chr3:130720188-130720189;chr3:130734995-130734996		72.94	79.49	77.03	35.21	48.94	22.64	69.70	76.92	68.57	79.66	74.07	74.75	73.81	68.75	84.85	65.75	71.64	68.37	54.55	62.63	54.17	58.16	65.06	46.25	45.83	61.07	55.95	44.87	60.00	37.93	69.57	82.50	58.62	56.30	63.46	46.02	64.16	69.16	5.00	0.550322	1.000000
N	intron_retention		chr10	-	chr10:73577234-73577324				chr10:73577233-73577234;chr10:73577324-73577325		63.64	66.67	58.00	NA	62.50	NA	53.19	52.94	64.29	55.88	57.41	44.74	64.29	56.00	45.45	52.17	47.37	43.59	58.33	60.00	59.26	59.38	71.15	43.75	NA	74.51	78.12	43.75	60.61	46.67	67.14	66.67	80.00	54.17	80.56	64.81	64.29	61.82	-2.47	0.980417	1.000000
K	intron_retention	RP11-1143G9.4	chr12	-	chr12:69747389-69747522				chr12:69747388-69747389;chr12:69747522-69747523		97.02	96.58	96.52	94.91	94.72	94.54	96.41	96.34	96.51	94.93	94.94	95.22	96.70	95.49	96.58	95.65	94.33	93.89	94.64	93.30	94.63	92.53	92.68	92.11	96.77	95.43	95.76	92.97	92.11	91.04	93.64	93.56	93.87	93.44	93.33	93.77	96.50	95.46	-1.03	0.848197	1.000000
N	alternative_acceptor	E2F4	chr16	+	chr16:67231815-67231949;chr16:67231815-67231910;chr16:67231815-67233183	chr16:67231815-67232033		chr16:67231911-67231949;chr16:67231950-67232033;chr16:67232034-67233183	chr16:67231949-67231950;chr16:67232033-67232034;chr16:67233183-67233184		0.00	1.22	0.00	2.04	1.12	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	3.95	0.00	5.17	0.00	2.00	0.00	1.45	4.88	4.76	0.00	5.45	0.00	1.43	1.82	0.00	0.00	1.72	0.00	1.72	0.00	1.47	0.00	-1.47	0.070288	0.585944
N	jcn_only_AA	PLXNB2	chr22	-	chr22:50716168-50716281	chr22:50716201-50716281		chr22:50716168-50716200	chr22:50716167-50716168		2.25	1.79	3.22	0.00	1.75	NA	0.00	0.00	1.54	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.00	1.44	3.29	3.19	3.49	1.84	5.56	0.00	5.04	3.50	4.17	2.05	0.00	2.29	2.97	2.17	1.65	2.34	3.20	1.14	2.27	1.14	0.247314	0.663989
N	alternative_donor	LUC7L	chr16	-	chr16:239339-239929;chr16:239339-239979;chr16:239339-239945	chr16:239339-239966		chr16:239930-239945;chr16:239946-239966;chr16:239967-239979	chr16:239945-239946;chr16:239966-239967;chr16:239979-239980		70.37	85.51	83.33	73.68	76.60	79.07	NA	NA	83.33	76.19	NA	87.50	81.82	NA	82.35	83.33	85.71	90.00	78.33	68.18	82.98	78.79	76.32	79.17	82.09	73.33	80.77	84.62	83.87	78.12	67.74	75.61	73.02	80.00	70.83	76.92	81.82	69.28	-12.54	0.005363	0.163838
N	jcn_only_AA	GOSR1,TMEM106A	chr17	+	chr17:28847040-28849271	chr17:28847040-28849260		chr17:28849261-28849271	chr17:28849271-28849272		0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	5.77	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	4.00	0.00	NA	0.00	0.00	0.00	4.35	0.00	8.33	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.922737	0.974340
N	cassette	TMEM175	chr4	+	chr4:947143-949542	chr4:947143-949192;chr4:949272-949542		chr4:949193-949271			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.67	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AD	TCEAL3	chrX	+	chrX:102862987-102863531	chrX:102862999-102863531		chrX:102862987-102862998	chrX:102862986-102862987		22.50	28.57	19.44	23.08	23.53	NA	26.67	20.00	16.00	27.78	24.39	NA	26.32	30.00	28.57	23.53	17.65	35.71	23.53	25.93	24.14	26.67	23.33	10.00	0.00	18.42	16.67	25.00	32.00	25.00	15.38	25.00	23.53	21.74	17.07	13.64	24.93	21.25	-3.68	0.904949	0.953792
N	alternative_acceptor	ARSA	chr22	-	chr22:51063893-51064006	chr22:51063911-51064006		chr22:51063893-51063910	chr22:51063892-51063893		4.30	2.94	5.19	3.00	3.28	2.71	0.00	1.09	0.00	0.00	0.00	1.18	1.45	1.39	2.78	0.00	2.99	0.00	3.21	2.70	2.52	2.08	1.79	0.00	1.39	1.87	1.69	1.35	3.48	0.74	5.21	4.00	4.12	4.41	2.94	4.07	2.19	2.29	0.09	0.544193	0.822189
K	intron_retention	INPPL1	chr11	+	chr11:71936211-71939233				chr11:71936210-71936211;chr11:71939233-71939234		0.00	10.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	6.25	NA	NA	0.00	NA	6.25	0.00	7.69	NA	NA	NA	NA	0.00	NA	NA	6.67	0.00	3.12	0.00	-3.12	0.496613	1.000000
K	intron_retention	CDK16	chrX	+	chrX:47085802-47085981				chrX:47085801-47085802;chrX:47085981-47085982		5.56	13.33	8.89	5.26	16.67	14.29	0.00	0.00	2.30	0.00	0.00	0.00	2.13	0.00	1.34	0.00	0.00	0.00	NA	11.76	6.06	20.69	18.52	14.00	13.64	0.00	11.36	2.78	7.69	6.67	7.69	12.68	0.00	13.04	14.89	10.20	2.13	2.78	0.65	0.545824	1.000000
K	alternative_donor	PIGG	chr4	+	chr4:527771-532941	chr4:530778-532941		chr4:527771-530777	chr4:527770-527771		4.55	1.61	4.76	0.00	0.00	0.00	0.00	NA	8.33	NA	NA	NA	3.45	0.00	6.25	NA	NA	NA	0.00	0.00	0.00	0.00	2.86	5.88	0.00	4.00	3.70	NA	3.57	0.00	0.00	4.55	0.00	6.25	4.55	4.00	0.00	0.00	0.00	0.496542	0.749318
K	intron_retention	RAB1B	chr11	+	chr11:66043299-66043299				chr11:66043298-66043299;chr11:66043299-66043300		100.00	100.00	100.00	NA	100.00	NA	97.37	100.00	100.00	100.00	96.55	100.00	100.00	96.55	96.30	100.00	100.00	100.00	NA	100.00	NA	100.00	95.24	100.00	100.00	96.00	94.87	NA	95.00	100.00	100.00	100.00	NA	100.00	94.74	96.15	100.00	100.00	0.00	0.832827	1.000000
K	cassette	AATF	chr17	+	chr17:35378314-35413900	chr17:35378314-35388910;chr17:35388983-35413900		chr17:35388911-35388982			100.00	100.00	100.00	100.00	97.62	96.63	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	96.74	100.00	95.40	100.00	98.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	93.75	95.69	100.00	100.00	96.77	100.00	100.00	0.00	0.179783	0.709176
N	alternative_donor	MS4A6A	chr11	-	chr11:59940603-59943036;chr11:59940603-59942978	chr11:59940603-59942874		chr11:59942875-59942978;chr11:59942979-59943036	chr11:59942978-59942979;chr11:59943036-59943037		86.67	87.67	86.36	95.40	90.48	89.80	97.66	93.71	NA	96.97	95.16	97.90	95.00	93.75	NA	91.01	94.79	97.22	85.88	91.89	100.00	90.14	90.45	92.31	89.56	91.67	95.00	91.25	92.96	92.16	NA	82.35	81.93	92.08	90.72	91.88	88.62	91.89	3.27	0.499965	0.753723
N	cassette	RP11-286N22.8,SDHAF2	chr11	+	chr11:61197655-61205475;chr11:61197655-61213412	chr11:61197655-61205096;chr11:61205321-61213412,chr11:61205321-61205475		chr11:61205097-61205320			69.23	59.26	87.01	71.05	81.16	61.90	84.75	91.07	93.75	88.46	86.87	92.16	83.58	86.21	91.55	81.44	87.25	88.68	77.78	73.58	66.67	83.33	88.24	83.33	78.57	91.11	78.69	87.23	83.54	84.21	70.31	77.11	65.71	80.25	83.13	77.65	78.17	79.89	1.72	0.392351	0.709492
N	cassette	MAN2B1	chr19	-	chr19:12760031-12760726;chr19:12759217-12760726;chr19:12759217-12760917;chr19:12760031-12760917	chr19:12759217-12760154,chr19:12760031-12760154;chr19:12760243-12760917,chr19:12760243-12760726		chr19:12760155-12760242			99.12	97.85	96.53	98.69	96.86	98.90	100.00	100.00	100.00	100.00	99.64	100.00	100.00	99.02	99.47	100.00	100.00	100.00	95.58	98.47	97.89	99.43	96.56	99.34	94.41	100.00	96.77	98.87	97.95	99.88	98.22	94.59	91.16	95.68	95.02	98.54	96.72	99.07	2.35	0.122961	0.709176
K	alternative_acceptor	EIF4G1	chr3	+	chr3:184041030-184041195	chr3:184041030-184041192		chr3:184041193-184041195	chr3:184041195-184041196		16.22	9.68	23.33	NA	NA	NA	23.14	17.81	20.78	21.48	22.79	21.13	19.17	17.95	22.22	23.70	20.51	16.30	NA	18.18	20.00	23.53	35.19	24.56	26.32	17.65	26.83	30.77	25.00	18.75	36.36	26.47	NA	27.27	24.49	28.33	21.16	17.88	-3.28	0.822204	0.939608
K	alternative_donor	U2AF2	chr19	+	chr19:56180536-56180809	chr19:56180548-56180809		chr19:56180536-56180547	chr19:56180535-56180536		10.00	10.86	7.93	10.53	11.00	7.14	9.40	7.25	9.09	7.44	6.71	10.20	8.92	7.59	9.92	8.86	7.60	5.45	12.00	14.74	10.53	9.82	8.99	6.93	11.67	6.58	9.23	7.62	9.73	13.85	13.10	11.69	13.64	12.07	7.53	11.81	11.27	8.79	-2.47	0.461513	0.719680
K	intron_retention	PTPN23	chr3	+	chr3:47453912-47454003				chr3:47453911-47453912;chr3:47454003-47454004		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.12	4.55	12.50	3.23	0.00	2.56	0.00	0.00	0.00	0.881414	1.000000
N	alternative_acceptor	AKAP8L	chr19	-	chr19:15508132-15508330;chr19:15508015-15508330	chr19:15508092-15508330		chr19:15508015-15508091;chr19:15508092-15508131	chr19:15508014-15508015;chr19:15508091-15508092		100.00	100.00	100.00	100.00	100.00	94.32	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.15	100.00	97.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.23	98.31	98.92	100.00	100.00	97.67	100.00	100.00	0.00	0.832465	0.940678
K	cassette	KMO	chr1	+	chr1:241752133-241753505	chr1:241752133-241753352;chr1:241753416-241753505		chr1:241753353-241753415			100.00	100.00	90.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	NA	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.60	NA	100.00	100.00	98.36	100.00	99.17	100.00	100.00	100.00	100.00	99.00	99.65	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	GPAT4	chr8	+	chr8:41468330-41469421				chr8:41468329-41468330;chr8:41469421-41469422		1.98	0.00	2.87	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	1.61	3.33	NA	4.48	3.12	0.00	0.00	1.61	4.49	2.96	NA	3.85	1.69	6.40	0.00	0.99	0.99	0.243388	1.000000
N	jcn_only_AD	CDK5RAP3	chr17	+	chr17:46053009-46053234;chr17:46053005-46053234	chr17:46053020-46053234		chr17:46053005-46053008;chr17:46053009-46053019	chr17:46053004-46053005;chr17:46053008-46053009		100.00	100.00	100.00	93.33	93.33	89.47	100.00	92.86	100.00	100.00	100.00	95.56	100.00	100.00	95.24	100.00	100.00	100.00	90.91	100.00	100.00	100.00	93.55	90.91	100.00	100.00	87.50	95.65	97.14	93.94	90.91	100.00	95.83	93.75	100.00	97.06	100.00	100.00	0.00	0.834860	0.923769
N	alternative_acceptor	ARAP1	chr11	-	chr11:72410598-72412693	chr11:72412230-72412693		chr11:72410598-72412229	chr11:72410597-72410598		0.54	3.75	0.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.49	1.17	0.83	0.84	0.00	5.56	0.65	0.00	0.00	0.93	3.45	11.54	2.42	0.92	1.33	1.43	2.17	1.30	0.59	3.12	1.03	0.70	1.02	3.44	0.59	-2.84	0.123919	0.610671
N	alternative_acceptor	CYTH4,MICALL1	chr22	+	chr22:37692107-37693604	chr22:37692107-37692744		chr22:37692745-37693604	chr22:37693604-37693605		0.71	5.77	0.90	NA	0.00	NA	0.48	0.18	0.39	0.00	0.00	0.37	0.42	0.33	0.48	0.00	0.00	0.00	8.33	0.34	0.00	0.00	0.82	0.80	4.44	0.76	0.60	2.20	1.04	0.00	1.49	0.38	5.88	1.89	0.00	0.85	5.11	0.53	-4.58	0.039327	0.560254
K	intron_retention	DAZAP1	chr19	+	chr19:1432690-1434735				chr19:1432689-1432690;chr19:1434735-1434736		0.00	4.48	1.85	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	1.19	0.00	4.05	6.67	2.47	0.00	0.00	0.00	1.30	0.00	5.71	4.35	3.90	0.00	0.00	3.70	2.08	0.00	-2.08	0.441987	1.000000
N	alternative_acceptor	TFEC	chr7	-	chr7:115580986-115581946;chr7:115580778-115581946	chr7:115580499-115581946		chr7:115580499-115580777;chr7:115580778-115580985	chr7:115580498-115580499;chr7:115580777-115580778		0.00	0.00	0.00	0.00	1.72	0.00	3.39	6.08	3.51	2.70	4.11	8.59	1.69	4.03	2.67	3.57	6.94	7.14	0.00	3.82	0.00	3.92	3.03	3.92	NA	1.29	0.00	1.90	0.00	3.08	2.88	0.76	0.00	0.00	0.00	0.00	0.00	3.35	3.35	0.105572	0.598353
K	intron_retention		chr21	+	chr21:45773749-45774530				chr21:45773748-45773749;chr21:45774530-45774531		0.00	0.00	2.63	5.88	0.00	0.00	0.00	0.00	20.00	12.50	0.00	19.05	0.00	6.78	7.14	3.03	0.00	0.00	1.61	0.00	0.00	0.00	0.00	9.09	0.00	0.00	11.76	15.38	0.00	6.67	5.56	0.00	2.50	2.13	1.11	5.63	0.00	0.00	0.00	0.642562	1.000000
K	intron_retention	RPS27	chr1	+	chr1:153964153-153964540				chr1:153964152-153964153;chr1:153964540-153964541		1.22	0.31	0.64	0.29	0.08	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.38	2.23	0.44	0.52	0.28	0.32	0.20	0.41	0.20	0.15	0.09	0.19	6.02	1.96	0.67	0.37	0.40	0.30	0.26	0.81	0.56	0.392203	1.000000
K	cassette	DNAJC7	chr17	-	chr17:40135655-40139836	chr17:40135655-40139612;chr17:40139713-40139836		chr17:40139613-40139712			4.44	0.00	3.54	5.77	2.33	4.26	1.16	4.88	2.94	1.20	1.46	1.54	1.09	3.70	2.76	2.63	0.75	1.64	6.76	3.52	2.99	3.45	1.40	3.70	0.00	5.29	3.12	1.06	2.33	3.88	7.55	9.04	5.97	2.29	2.31	5.77	1.12	4.66	3.54	0.124621	0.709176
K	intron_retention	NAP1L1	chr12	-	chr12:76441499-76442172				chr12:76441498-76441499;chr12:76442172-76442173		12.90	4.09	8.93	3.36	3.71	2.23	31.75	26.83	25.81	37.50	40.19	32.50	33.87	26.47	26.32	22.16	37.78	37.10	4.24	13.21	4.41	14.41	8.43	11.81	2.49	11.90	9.63	10.24	10.33	9.05	9.21	10.00	2.59	12.14	10.00	12.16	4.17	13.05	8.89	0.940689	1.000000
N	mutually_exclusive	LILRB2	chr19	-	chr19:54780156-54780660,chr19:54780784-54781403	chr19:54780156-54780234,chr19:54780311-54781403	chr19:54780661-54780783	chr19:54780235-54780310			9.52	38.10	5.56	NA	22.73	38.10	0.00	4.05	0.00	15.22	4.55	2.22	0.00	0.00	0.00	0.00	10.00	2.27	31.58	10.45	17.95	16.67	18.42	5.88	9.09	5.56	8.33	12.12	3.45	7.35	11.25	15.00	34.38	10.71	11.54	4.76	20.34	7.54	-12.80	0.161381	0.403453
K	alternative_first_exon	PCBP1-AS1	chr2	-	chr2:70312757-70313383,chr2:70312757-70313255,chr2:70312757-70313186,chr2:70312757-70312947;chr2:70312757-70314919;chr2:70312757-70315729;chr2:70312757-70314204;chr2:70312757-70314109	chr2:70312757-70315561	chr2:70313384-70313405;chr2:70314920-70315039;chr2:70315730-70315978;chr2:70314205-70314452;chr2:70314110-70314147	chr2:70315562-70315686			23.67	13.44	21.81	15.28	17.54	9.09	28.73	25.59	27.30	29.14	26.88	27.67	27.30	25.62	23.64	26.58	30.96	31.61	14.38	23.89	18.46	25.97	23.56	30.00	13.48	22.70	21.15	24.48	24.88	20.60	18.59	22.96	13.64	28.41	23.05	23.91	14.01	23.78	9.77	0.178821	0.388838
N	cassette	DTX2	chr7	+	chr7:76129838-76132742	chr7:76129838-76131614;chr7:76131774-76132742		chr7:76131615-76131773			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	cassette	PPM1N	chr19	+	chr19:46003820-46005274	chr19:46003820-46003907;chr19:46003969-46005274		chr19:46003908-46003968			84.21	100.00	100.00	NA	90.00	NA	NA	NA	NA	NA	NA	NA	NA	78.12	NA	NA	NA	NA	87.50	88.24	NA	NA	NA	NA	100.00	100.00	100.00	NA	84.62	NA	NA	NA	100.00	NA	76.92	82.35	100.00	86.22	-13.78	0.155457	0.709176
K	intron_retention	LZTS2	chr10	+	chr10:102763924-102765214				chr10:102763923-102763924;chr10:102765214-102765215		0.00	11.11	15.00	NA	11.76	NA	2.27	2.44	0.00	0.00	2.44	NA	4.55	0.00	0.00	0.00	2.50	0.00	NA	14.29	11.11	NA	10.00	NA	NA	4.55	12.82	0.00	0.00	0.00	15.38	16.67	16.67	7.69	6.25	3.85	7.83	3.50	-4.33	0.957014	1.000000
N	jcn_only_AA	AUP1	chr2	-	chr2:74754249-74754374;chr2:74754179-74754374	chr2:74754280-74754374		chr2:74754179-74754248;chr2:74754249-74754279	chr2:74754178-74754179;chr2:74754248-74754249		0.00	0.00	0.00	5.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	16.67	8.70	0.00	0.00	17.65	0.00	0.00	0.00	0.00	0.00	5.00	0.00	11.11	0.00	0.00	0.00	11.76	0.00	0.00	0.00	0.391002	0.663989
K	cassette	HSD17B11	chr4	-	chr4:88293968-88303406	chr4:88293968-88295850;chr4:88295983-88303406		chr4:88295851-88295982			98.29	100.00	100.00	NA	100.00	NA	98.08	96.90	94.68	100.00	100.00	98.21	100.00	100.00	95.38	97.78	96.55	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.43	99.18	100.00	100.00	100.00	100.00	99.07	100.00	100.00	100.00	100.00	100.00	99.22	-0.78	0.435824	0.742736
N	alternative_acceptor	RASAL3	chr19	-	chr19:15565374-15565467	chr19:15565390-15565467		chr19:15565374-15565389	chr19:15565373-15565374		6.25	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.709013
N	coord_cassette	SEC11A	chr15	-	chr15:85214014-85259255	chr15:85214014-85223943;chr15:85224064-85230855;chr15:85231006-85259255		chr15:85223944-85224063;chr15:85230856-85231005			87.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	100.00	98.25	100.00	100.00	100.00	96.97	100.00	100.00	97.14	100.00	86.36	100.00	100.00	100.00	100.00	88.46	97.06	100.00	97.73	100.00	92.00	100.00	94.23	-5.77	0.076583	0.643829
K	intron_retention	NUDT22	chr11	+	chr11:63996817-63996949				chr11:63996816-63996817;chr11:63996949-63996950		8.70	5.84	8.70	5.88	13.21	4.76	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.12	0.00	0.00	NA	1.98	0.00	4.00	NA	20.00	NA	7.35	9.09	3.57	7.69	17.24	NA	11.11	7.69	6.38	23.08	15.79	10.00	3.91	4.35	0.44	0.928811	1.000000
N	jcn_only_AA	ACOT9	chrX	-	chrX:23724857-23725993	chrX:23724975-23725993		chrX:23724857-23724974	chrX:23724856-23724857		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.33	1.47	5.00	0.89	0.00	0.45	0.00	0.00	0.00	0.646937	0.842418
N	jcn_only_AD	ZNF330	chr4	+	chr4:142142241-142143519;chr4:142118096-142143519;chr4:142142263-142143519;chr4:142142232-142143519;chr4:142142171-142143519	chr4:142142209-142143519		chr4:142118096-142142170;chr4:142142171-142142208;chr4:142142209-142142231;chr4:142142232-142142240;chr4:142142241-142142262	chr4:142118095-142118096;chr4:142142170-142142171;chr4:142142208-142142209;chr4:142142231-142142232;chr4:142142240-142142241		0.00	0.00	0.00	0.00	0.00	0.00	1.15	3.70	4.00	0.00	1.00	0.00	4.00	4.00	0.00	2.67	1.05	0.00	0.00	6.25	3.70	0.00	7.41	0.00	0.00	0.00	0.00	10.00	0.00	0.00	9.09	0.00	0.00	6.45	0.00	0.00	0.00	3.85	3.85	0.103008	0.643330
K	intron_retention	UBE2D2	chr5	+	chr5:138994360-138994445				chr5:138994359-138994360;chr5:138994445-138994446		2.86	0.00	5.26	0.00	0.00	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.81	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	1.67	5.43	1.41	1.88	0.84	0.57	0.00	0.74	0.74	0.464716	1.000000
N	alternative_acceptor	ABHD12	chr20	-	chr20:25270866-25282854;chr20:25275667-25282854;chr20:25282270-25282854;chr20:25282015-25282854	chr20:25281425-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		26.09	28.00	26.67	27.78	16.33	30.19	15.91	10.53	20.00	35.71	6.78	30.00	24.44	26.67	26.32	20.00	26.00	33.33	28.04	29.41	26.67	26.92	24.14	25.00	28.07	27.27	23.81	24.14	14.29	26.67	12.20	27.78	29.00	15.00	24.53	28.21	28.02	26.38	-1.64	0.397292	0.714161
N	jcn_only_AA	FAM65A,METTL9	chr16	+	chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666550;chr16:21636437-21666547	chr16:21636437-21638265		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		0.00	0.00	0.77	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.226987	0.663989
N	cassette	SNX1	chr15	+	chr15:64411054-64418277	chr15:64411054-64415701;chr15:64415746-64418277		chr15:64415702-64415745			98.51	100.00	97.33	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.55	100.00	100.00	100.00	93.94	97.06	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.259920	0.709176
K	intron_retention		chrX	+	chrX:47085427-47085677				chrX:47085426-47085427;chrX:47085677-47085678		16.67	18.18	9.26	NA	12.50	NA	0.00	2.50	1.27	3.12	0.00	0.00	1.92	0.00	4.48	5.56	1.56	0.00	NA	11.11	7.41	25.00	25.00	19.61	18.75	12.20	15.91	10.34	20.00	6.98	11.76	14.49	20.00	16.33	15.00	12.37	18.18	11.43	-6.75	0.797241	1.000000
K	intron_retention		chr17	-	chr17:76113726-76113882				chr17:76113725-76113726;chr17:76113882-76113883		2.56	5.77	8.33	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.57	NA	0.00	NA	4.26	NA	5.88	0.00	7.14	0.00	3.23	NA	8.33	0.00	6.06	0.00	0.00	0.00	5.82	1.28	-4.54	0.789308	1.000000
N	alternative_acceptor	SMARCD2	chr17	-	chr17:61912161-61912771	chr17:61912392-61912771		chr17:61912161-61912391	chr17:61912160-61912161		4.17	0.00	2.99	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.27	0.00	0.00	0.00	0.00	3.51	NA	0.00	2.44	5.26	0.00	0.00	0.00	0.192495	0.660713
K	intron_retention		chr11	-	chr11:6637306-6637545				chr11:6637305-6637306;chr11:6637545-6637546		2.17	0.00	10.53	NA	0.00	NA	0.00	0.00	0.00	0.00	0.13	0.00	0.34	0.00	0.00	0.00	0.27	0.00	0.00	2.41	0.00	2.27	3.51	1.10	0.00	1.17	3.01	0.74	1.43	1.30	0.00	3.08	NA	3.98	3.55	0.56	0.00	0.58	0.58	0.385597	1.000000
N	jcn_only_AD	CCDC107	chr9	+	chr9:35658725-35660397	chr9:35660240-35660397		chr9:35658725-35660239	chr9:35658724-35658725		5.26	4.40	0.00	0.00	5.71	11.11	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	14.29	2.78	0.00	6.67	0.00	5.13	0.00	1.89	11.11	0.00	0.00	0.00	2.56	2.56	0.248785	0.657607
N	jcn_only_AA	MBD6	chr12	+	chr12:57922502-57922728	chr12:57922502-57922651		chr12:57922652-57922728	chr12:57922728-57922729		0.00	0.00	6.00	0.00	0.00	NA	7.41	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.67	0.00	0.00	8.33	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	6.98	0.00	0.00	3.45	0.00	3.12	0.00	0.00	0.00	0.452799	0.715134
N	alternative_donor	MYO1F	chr19	-	chr19:8615241-8615445	chr19:8615241-8615439		chr19:8615440-8615445	chr19:8615445-8615446		1.90	2.75	2.97	NA	2.22	NA	0.00	0.78	1.16	2.86	2.03	0.00	1.35	0.75	0.00	0.00	0.75	0.00	4.35	3.15	5.17	3.45	1.53	0.00	0.00	2.59	2.79	0.00	2.97	0.00	3.28	3.65	2.56	1.85	3.05	1.41	1.96	2.25	0.29	0.780951	0.919586
K	cassette	HAGH	chr16	-	chr16:1867273-1869897	chr16:1867273-1869115;chr16:1869225-1869897		chr16:1869116-1869224			68.97	90.74	71.70	85.00	82.22	100.00	97.01	93.02	98.31	94.87	98.51	100.00	97.26	96.88	95.31	100.00	98.28	100.00	85.37	82.61	79.37	84.62	88.10	100.00	66.67	93.75	81.03	89.29	96.72	94.12	80.77	78.00	68.18	84.00	79.41	88.89	88.06	87.81	-0.24	0.805046	0.936947
N	jcn_only_AA	ACSF2	chr17	+	chr17:2280110-2280257	chr17:2280110-2280252		chr17:2280253-2280257	chr17:2280257-2280258		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.15	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_acceptor	SLCO2B1	chr11	+	chr11:74914473-74914912;chr11:74914473-74921929;chr11:74914473-74914893;chr11:74914473-74925486;chr11:74914473-74915444	chr11:74914473-74925508		chr11:74914894-74914912;chr11:74914913-74915444;chr11:74915445-74921929;chr11:74921930-74925486;chr11:74925487-74925508	chr11:74914912-74914913;chr11:74915444-74915445;chr11:74921929-74921930;chr11:74925486-74925487;chr11:74925508-74925509		3.51	35.58	7.69	NA	19.67	57.14	0.00	0.00	NA	0.00	3.10	0.00	1.46	5.41	NA	0.00	0.00	7.14	31.82	13.04	18.75	15.38	13.58	36.36	51.16	8.33	12.77	14.81	5.61	27.27	NA	0.00	41.51	22.22	8.89	0.00	33.70	5.41	-28.29	0.061921	0.579990
K	alternative_first_exon	MT1E	chr16	+	chr16:56660487-56660791;chr16:56659792-56660791	chr16:56660444-56660791	chr16:56659387-56659791	chr16:56660378-56660443			99.53	100.00	99.24	98.28	NA	100.00	97.67	99.73	99.69	96.67	95.83	100.00	100.00	99.77	99.72	99.42	95.24	100.00	100.00	99.42	99.01	100.00	NA	100.00	100.00	99.32	98.86	NA	NA	100.00	99.34	99.26	100.00	93.33	NA	98.88	100.00	99.47	-0.53	0.822487	0.878417
K	intron_retention	MBOAT7	chr19	-	chr19:54682659-54684489				chr19:54682658-54682659;chr19:54684489-54684490		38.84	4.55	33.08	NA	NA	NA	14.29	22.78	31.48	31.25	33.33	20.00	30.00	30.00	34.78	30.00	40.00	NA	NA	34.62	26.83	NA	30.43	30.00	16.67	21.60	37.12	33.33	25.00	30.00	35.29	40.51	NA	30.77	NA	47.83	15.48	32.31	16.83	0.193902	1.000000
K	alternative_acceptor	SUPT6H,TRPV2	chr17	+	chr17:16337013-16338203	chr17:16337013-16338172		chr17:16338173-16338203	chr17:16338203-16338204		3.03	4.76	3.03	5.56	1.79	2.54	0.65	0.00	0.00	0.00	0.00	0.00	0.80	0.56	0.00	0.00	1.01	0.00	1.18	3.33	1.27	2.44	5.06	2.38	1.90	2.13	4.88	1.30	3.33	0.88	0.97	1.69	1.82	4.92	3.33	1.94	1.50	1.55	0.05	0.831689	0.940678
K	intron_retention	ADPRHL2	chr1	+	chr1:36558124-36558697				chr1:36558123-36558124;chr1:36558697-36558698		0.00	0.00	9.52	2.78	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	3.45	0.00	3.12	0.00	2.56	NA	0.00	0.00	1.05	0.00	1.15	1.92	3.03	0.00	3.45	0.00	2.58	0.00	0.00	0.00	0.474789	1.000000
K	alternative_donor	PLXNB2	chr22	-	chr22:50729027-50733154	chr22:50729027-50733147		chr22:50733148-50733154	chr22:50733154-50733155		52.38	42.42	49.12	NA	NA	NA	50.00	56.76	58.14	63.64	50.00	NA	54.95	50.00	51.22	60.00	54.55	NA	NA	58.33	NA	NA	48.00	NA	40.00	37.50	45.83	NA	45.45	NA	NA	60.71	NA	50.00	66.67	64.71	46.21	52.38	6.17	0.437766	0.698333
K	cassette	CHCHD7	chr8	+	chr8:57124397-57127156	chr8:57124397-57125320;chr8:57125449-57127156		chr8:57125321-57125448			23.53	13.33	26.47	40.00	42.11	41.38	29.41	31.03	37.50	38.46	38.10	48.39	22.22	31.58	36.67	34.88	33.33	44.00	16.67	22.22	20.59	41.67	38.10	50.00	NA	27.78	38.46	44.44	44.44	38.78	23.08	33.33	14.29	52.00	54.55	56.00	16.67	25.66	8.98	0.072865	0.634271
N	jcn_only_AA	PIGT	chr20	+	chr20:44049070-44049167	chr20:44049070-44049147		chr20:44049148-44049167	chr20:44049167-44049168		0.00	0.00	6.76	0.00	0.00	NA	0.71	0.00	3.12	1.43	0.00	0.00	0.00	0.00	0.00	2.82	1.12	0.00	0.00	2.56	0.00	0.00	2.35	3.17	NA	0.00	5.97	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.549772	0.783383
N	cassette	TBC1D9B	chr5	-	chr5:179302188-179305308	chr5:179302188-179302919;chr5:179303038-179305308		chr5:179302920-179303037			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	96.23	NA	100.00	94.74	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	ITGB5	chr3	-	chr3:124528004-124538585	chr3:124528004-124536467;chr3:124536558-124538585		chr3:124536468-124536557			95.52	100.00	100.00	NA	100.00	NA	97.12	96.36	100.00	100.00	99.04	99.15	98.76	100.00	NA	99.07	99.44	98.62	93.33	95.35	100.00	100.00	97.40	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	93.10	97.96	97.28	100.00	97.94	98.18	0.24	0.621956	0.862437
K	intron_retention	AP5Z1	chr7	+	chr7:4823092-4823319				chr7:4823091-4823092;chr7:4823319-4823320		14.71	28.57	22.73	NA	10.00	NA	0.00	0.00	3.70	1.64	1.72	0.00	0.00	6.38	6.25	4.23	3.28	0.00	NA	12.90	16.67	9.52	17.39	14.81	25.00	13.51	17.24	11.54	12.12	9.68	20.00	21.62	30.00	16.67	23.53	16.98	25.00	13.21	-11.79	0.929677	1.000000
K	intron_retention	HSF1	chr8	+	chr8:145533583-145534859				chr8:145533582-145533583;chr8:145534859-145534860		4.17	13.33	6.67	0.00	0.00	NA	1.92	0.00	2.17	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	NA	0.00	0.00	4.35	6.25	10.34	0.00	0.00	2.86	3.12	3.33	0.00	6.67	11.54	0.00	2.86	0.00	5.41	0.00	0.00	0.00	0.699696	1.000000
N	alternative_acceptor	GLTSCR2	chr19	+	chr19:48259080-48259784	chr19:48259080-48259300		chr19:48259301-48259784	chr19:48259784-48259785		3.88	1.29	1.91	2.43	1.42	1.75	0.50	0.00	0.00	0.80	0.74	0.00	0.48	0.00	0.51	1.32	1.05	0.00	1.57	4.62	1.97	4.10	1.72	5.17	0.78	1.61	0.88	1.77	1.46	2.56	7.76	3.03	2.24	3.39	3.50	3.37	1.04	2.75	1.71	0.202740	0.668672
N	alternative_donor		chr19	-	chr19:5700939-5703651;chr19:5700939-5704119	chr19:5700939-5705782		chr19:5703652-5704119;chr19:5704120-5705782	chr19:5704119-5704120;chr19:5705782-5705783		100.00	100.00	97.30	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	COG5	chr7	-	chr7:106844076-106850970				chr7:106844075-106844076;chr7:106850970-106850971		0.00	0.00	0.00	NA	8.33	NA	0.00	0.00	5.56	0.00	0.00	0.00	2.78	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	7.69	0.00	NA	0.00	NA	7.69	7.14	0.00	NA	8.33	7.69	0.00	0.00	0.00	0.485875	1.000000
K	intron_retention	SIGLEC1	chr20	-	chr20:3677990-3678444				chr20:3677989-3677990;chr20:3678444-3678445		7.03	2.27	2.22	NA	NA	NA	0.00	0.65	0.19	0.00	0.00	0.80	1.72	1.33	1.46	0.00	0.00	0.88	NA	5.00	0.00	NA	0.00	10.39	11.36	2.72	4.29	11.76	6.90	6.67	2.63	0.00	NA	19.05	3.85	8.09	2.00	2.67	0.68	0.928008	1.000000
K	cassette	SNAPC5	chr15	-	chr15:66786891-66789979;chr15:66786891-66789827	chr15:66786891-66787667;chr15:66787758-66789979,chr15:66787758-66789827		chr15:66787668-66787757			70.00	48.00	70.00	NA	70.00	NA	81.82	70.00	80.77	50.00	57.14	NA	59.46	NA	82.61	72.00	65.12	NA	66.67	50.00	82.35	72.73	75.00	NA	NA	NA	78.57	70.00	72.00	58.33	54.55	71.43	73.33	63.64	64.71	81.82	66.67	62.27	-4.40	0.563581	0.824881
K	intron_retention	OTUD5	chrX	-	chrX:48780188-48780413				chrX:48780187-48780188;chrX:48780413-48780414		83.64	90.76	86.87	81.16	90.68	72.94	89.58	85.14	84.51	82.93	88.68	58.82	87.50	88.89	83.82	82.35	84.31	75.86	75.00	79.75	73.20	85.37	89.55	84.09	83.12	79.31	89.42	81.13	87.50	79.78	85.00	82.61	73.27	86.76	88.33	88.18	85.31	84.32	-0.99	0.882757	1.000000
K	jcn_only_AA	IGSF8	chr1	-	chr1:160061399-160061597	chr1:160061422-160061597		chr1:160061399-160061421	chr1:160061398-160061399		7.14	21.43	4.65	20.00	0.00	7.69	0.00	7.41	9.38	6.98	12.50	10.64	0.00	7.89	8.66	13.89	13.04	5.13	5.41	15.79	8.70	10.00	5.88	4.55	0.00	9.52	2.86	19.05	12.50	19.40	6.25	0.00	0.00	0.00	NA	12.50	0.00	7.65	7.65	0.272725	0.663989
K	intron_retention		chr16	+	chr16:50348318-50348924				chr16:50348317-50348318;chr16:50348924-50348925		3.80	13.33	14.29	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	20.00	18.18	5.66	0.00	NA	0.00	4.76	NA	0.00	0.00	7.69	8.82	NA	0.00	5.17	1.52	0.00	1.35	1.35	0.839517	1.000000
K	alternative_acceptor	SCYL1	chr11	+	chr11:65304222-65304507	chr11:65304222-65304456		chr11:65304457-65304507	chr11:65304507-65304508		52.27	49.21	49.06	58.54	50.98	44.90	46.94	81.08	66.00	52.31	53.06	47.83	58.70	71.05	53.23	57.41	45.45	47.73	48.21	61.29	66.67	62.07	44.44	52.94	59.26	63.64	50.00	55.56	48.84	65.22	58.70	57.14	48.39	49.06	50.00	52.73	48.80	62.47	13.67	0.026526	0.546324
K	intron_retention	TTLL3	chr3	+	chr3:9876592-9876777				chr3:9876591-9876592;chr3:9876777-9876778	chr3:9876365-9876591;chr3:9876778-9876892	81.25	90.79	91.67	85.71	79.17	81.40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	85.96	92.31	80.00	NA	90.00	NA	79.08	82.35	89.66	80.00	81.48	81.25	87.50	88.46	84.72	80.00	89.47	94.44	85.34	84.92	-0.42	0.952803	1.000000
K	intron_retention		chr15	+	chr15:83655122-83656087				chr15:83655121-83655122;chr15:83656087-83656088		7.14	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	1.72	2.04	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	AP5Z1	chr7	+	chr7:4830519-4830745				chr7:4830518-4830519;chr7:4830745-4830746		6.67	5.46	6.90	2.63	4.38	4.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.20	6.02	7.14	7.14	5.31	9.68	9.92	6.85	3.95	1.64	2.53	2.22	10.26	7.63	6.10	6.59	5.56	4.39	5.78	6.34	0.57	0.942134	1.000000
N	jcn_only_AD	MYO18A,PLEKHM1	chr17	-	chr17:43517593-43522835;chr17:43517593-43522131	chr17:43517593-43518202		chr17:43518203-43522131;chr17:43522132-43522835	chr17:43522131-43522132;chr17:43522835-43522836		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.55	2.13	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	3.12	0.00	0.00	0.00	NA	5.26	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.191662	0.657607
K	intron_retention		chr1	+	chr1:112020051-112020347				chr1:112020050-112020051;chr1:112020347-112020348		21.69	26.96	38.98	13.33	32.62	0.00	4.17	0.00	10.00	2.90	3.73	3.57	1.89	8.33	NA	1.59	3.72	3.90	18.52	17.24	20.69	6.25	32.38	20.83	16.67	35.00	29.33	10.00	23.63	11.54	36.36	38.00	17.14	22.00	42.11	14.58	16.91	19.46	2.56	0.859070	1.000000
K	intron_retention		chr10	+	chr10:13164488-13165994				chr10:13164487-13164488;chr10:13165994-13165995		5.08	NA	3.64	1.96	0.00	2.82	0.00	2.48	1.36	3.57	0.00	4.55	0.00	1.37	1.85	2.54	5.00	1.80	0.00	2.07	1.56	4.23	0.00	5.53	0.00	3.57	6.67	4.04	2.63	2.90	3.60	4.20	0.00	5.93	3.53	6.30	0.00	3.02	3.02	0.015123	1.000000
K	intron_retention	BTBD2	chr19	-	chr19:1986649-1986828				chr19:1986648-1986649;chr19:1986828-1986829		8.00	0.00	5.71	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.08	0.00	4.17	NA	0.00	NA	0.00	NA	0.00	NA	4.00	NA	0.00	NA	3.23	NA	0.00	NA	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.699074	1.000000
K	intron_retention		chr17	+	chr17:79661884-79661953				chr17:79661883-79661884;chr17:79661953-79661954		16.07	26.67	13.51	NA	18.75	NA	0.00	0.00	3.12	3.17	2.38	0.00	4.62	3.70	4.05	3.36	4.08	0.00	NA	15.52	26.32	17.95	18.60	20.37	NA	12.73	19.30	19.44	17.95	24.14	26.53	26.19	8.33	25.76	15.58	20.69	6.47	14.12	7.65	0.972267	1.000000
N	jcn_only_AA	APH1B	chr15	+	chr15:63594672-63597812	chr15:63594672-63594922		chr15:63594923-63597812	chr15:63597812-63597813		0.00	0.00	4.62	3.23	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	4.00	2.56	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.191002	0.663989
K	alternative_acceptor	FKBP8	chr19	-	chr19:18649244-18650180	chr19:18649247-18650180		chr19:18649244-18649246	chr19:18649243-18649244		44.98	38.73	45.34	47.83	44.90	34.00	48.60	53.28	54.17	51.88	53.85	49.26	51.67	52.50	53.78	54.24	49.71	50.00	43.41	46.99	48.67	45.16	45.20	45.68	38.73	53.66	45.58	50.00	51.65	50.43	49.30	52.08	40.14	47.44	42.06	43.12	41.77	50.90	9.12	0.037331	0.560254
K	alternative_acceptor	SLC25A39	chr17	-	chr17:42399897-42400175	chr17:42399921-42400175		chr17:42399897-42399920	chr17:42399896-42399897		0.00	5.71	8.96	NA	6.52	NA	12.96	11.11	16.13	17.14	18.10	18.00	14.41	13.64	17.24	19.28	14.07	9.30	6.25	12.50	10.00	6.67	12.12	12.00	0.00	7.69	14.29	18.18	13.11	10.00	18.18	12.90	3.57	9.26	11.86	8.93	5.98	11.80	5.82	0.343818	0.709013
N	cassette	THEMIS2	chr1	+	chr1:28208637-28211805;chr1:28203240-28211805;chr1:28208589-28211805	chr1:28203240-28209023,chr1:28208589-28209023,chr1:28208637-28209023;chr1:28209555-28211805		chr1:28209024-28209554			53.58	33.73	51.29	72.73	58.21	NA	82.88	89.45	78.74	88.52	86.29	90.83	86.84	95.57	92.79	92.22	94.51	94.64	38.10	51.17	45.54	72.22	60.75	90.38	54.55	63.73	42.32	87.21	76.24	90.29	60.80	51.89	22.58	76.67	68.12	86.32	46.33	62.27	15.94	0.262576	0.709176
N	alternative_acceptor	LMBR1L	chr12	-	chr12:49494203-49494338	chr12:49494238-49494338		chr12:49494203-49494237	chr12:49494202-49494203		100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	91.67	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	0.00	0.391002	0.709013
N	jcn_only_AA	RP11-24F11.2	chr3	-	chr3:46408776-46412734;chr3:46406537-46412734	chr3:46408772-46412734		chr3:46406537-46408771;chr3:46408772-46408775	chr3:46406536-46406537;chr3:46408771-46408772		0.00	0.00	4.00	NA	8.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	11.76	5.26	0.00	0.00	4.65	0.00	0.00	10.00	0.00	0.00	0.00	3.85	3.70	0.00	4.55	0.00	7.41	0.00	0.00	0.00	16.67	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	MFSD12	chr19	-	chr19:3538709-3542773	chr19:3538755-3542773					100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	NA	NA	NA	100.00	NA	100.00	100.00	96.36	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	NA	95.24	94.44	100.00	95.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	alternative_donor	COG4	chr16	-	chr16:70515391-70515666	chr16:70515391-70515661		chr16:70515662-70515666	chr16:70515666-70515667		3.85	4.94	2.38	NA	5.00	NA	0.00	NA	0.00	NA	0.00	NA	2.70	0.00	7.69	NA	0.00	NA	4.17	8.33	2.04	NA	2.63	0.00	0.00	0.00	4.00	NA	5.26	0.00	6.67	4.26	4.55	0.00	5.56	11.54	3.44	3.85	0.42	0.607336	0.815331
K	alternative_acceptor	CHKB,CHKB-CPT1B	chr22	-	chr22:51018232-51018402	chr22:51018260-51018402		chr22:51018232-51018259	chr22:51018231-51018232		70.37	69.62	71.43	72.73	62.90	70.83	88.24	81.82	80.00	NA	83.33	NA	77.27	89.47	85.71	NA	75.00	NA	70.00	57.45	65.08	75.00	68.00	70.59	62.67	74.60	76.19	63.33	76.19	66.67	64.52	58.56	64.10	63.27	65.85	80.00	69.81	72.48	2.67	0.866660	0.955025
N	alternative_first_exon	FTH1	chr11	-	chr11:61733050-61734123;chr11:61733050-61734783	chr11:61733050-61734460	chr11:61734784-61735132	chr11:61734461-61734638			7.84	10.00	10.26	2.70	3.03	9.09	4.55	1.05	2.22	0.71	0.97	0.80	4.17	2.15	2.70	1.41	1.45	3.92	16.67	10.53	4.82	10.71	4.55	19.35	NA	9.09	7.69	10.81	5.26	5.36	7.41	8.70	10.53	11.63	12.12	8.20	10.00	7.62	-2.38	0.339511	0.536334
N	jcn_only_AD	ZDHHC4	chr7	+	chr7:6623063-6624646	chr7:6623176-6624646		chr7:6623063-6623175	chr7:6623062-6623063		0.00	0.00	0.00	NA	0.00	NA	3.57	0.00	0.00	0.00	6.67	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	14.29	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.859060	0.930693
K	cassette	RNF31,RP11-468E2.4	chr14	+	chr14:24627409-24629447	chr14:24627409-24629072;chr14:24629170-24629447		chr14:24629073-24629169			93.42	83.95	93.33	92.31	87.23	93.63	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	90.91	93.44	87.21	95.45	90.62	89.66	92.42	95.59	92.06	93.75	95.45	95.00	80.61	84.76	75.25	91.43	92.59	93.83	91.66	94.52	2.85	0.500391	0.783443
K	intron_retention	COPS6	chr7	+	chr7:99687370-99688021				chr7:99687369-99687370;chr7:99688021-99688022		0.00	0.00	1.85	0.00	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	3.57	0.00	0.00	2.13	3.85	NA	6.25	2.33	0.00	0.00	0.00	9.09	7.50	0.00	4.00	6.82	5.56	0.00	1.78	1.78	0.479466	1.000000
K	intron_retention	MALAT1	chr11	+	chr11:65267870-65268007				chr11:65267869-65267870;chr11:65268007-65268008		91.03	93.33	92.14	91.55	84.78	90.48	91.18	93.21	89.61	93.44	93.33	100.00	90.53	92.86	91.93	88.31	96.00	100.00	88.98	87.40	88.17	88.29	91.00	91.33	89.07	92.37	91.72	87.95	89.89	89.67	85.14	90.20	84.21	92.14	93.30	90.53	89.80	91.70	1.90	0.945366	1.000000
N	alternative_donor	N4BP2L1	chr13	-	chr13:32976039-32976843;chr13:32976039-32977044	chr13:32976039-32977286		chr13:32976844-32977044;chr13:32977045-32977286	chr13:32977044-32977045;chr13:32977286-32977287		14.44	26.67	11.88	62.22	50.00	76.04	6.90	5.68	9.80	6.62	NA	4.70	4.76	6.06	6.15	8.00	15.38	5.54	NA	13.10	38.24	11.84	31.25	12.43	66.67	12.03	9.72	8.70	NA	27.00	23.81	17.07	52.38	16.07	20.00	14.87	26.67	12.56	-14.11	0.199988	0.570816
K	cassette	DSTN	chr20	+	chr20:17550857-17581382	chr20:17550857-17572576;chr20:17572709-17581382		chr20:17572577-17572708			1.75	0.00	0.00	0.00	3.45	0.00	2.14	0.00	1.92	2.97	3.75	3.45	3.79	0.00	2.17	3.15	4.22	4.90	0.00	3.57	0.00	2.50	2.41	2.27	NA	6.90	2.13	4.88	3.92	0.00	0.00	0.00	NA	3.08	1.47	2.47	1.07	0.88	-0.20	0.714086	0.897987
K	intron_retention		chr16	+	chr16:67916769-67916860				chr16:67916768-67916769;chr16:67916860-67916861		4.35	0.00	3.39	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.33	2.38	8.33	1.33	8.33	0.00	3.45	3.57	0.00	4.08	4.65	8.33	12.28	0.00	3.03	2.78	2.38	0.00	3.39	3.39	0.184046	1.000000
K	jcn_only_AA	BRMS1	chr11	-	chr11:66105279-66105713	chr11:66105361-66105713		chr11:66105279-66105360	chr11:66105278-66105279		96.25	96.77	94.87	96.05	93.68	93.33	98.11	100.00	96.08	94.12	96.61	100.00	96.61	93.33	95.08	93.65	96.83	95.45	90.81	87.14	92.65	94.12	93.58	93.94	94.68	97.73	96.30	95.83	95.60	92.54	94.95	92.91	92.79	96.61	93.33	95.38	95.65	95.60	-0.05	0.977612	0.992281
K	intron_retention		chr19	+	chr19:1272051-1272425				chr19:1272050-1272051;chr19:1272425-1272426		15.93	19.13	25.91	5.61	5.68	10.29	5.13	4.62	7.32	3.12	4.46	1.92	10.73	5.14	11.30	2.58	4.67	5.36	10.00	14.75	10.91	14.67	14.44	16.67	26.15	20.29	25.27	10.56	9.92	13.58	6.95	19.23	8.64	13.85	21.33	16.72	10.37	10.85	0.48	0.859950	1.000000
N	cassette	CEP250	chr20	+	chr20:34096020-34097826	chr20:34096020-34096771;chr20:34096874-34097826		chr20:34096772-34096873			100.00	100.00	88.00	89.29	95.65	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	93.55	87.50	100.00	100.00	100.00	91.67	100.00	92.86	100.00	100.00	100.00	100.00	87.50	100.00	94.74	100.00	100.00	100.00	100.00	90.18	-9.82	0.129822	0.709176
N	alternative_last_exon	SIGLEC9	chr19	+	chr19:51631768-51632056,chr19:51631768-51633254,chr19:51631768-51633261;chr19:51631768-51641848;chr19:51631768-51639218;chr19:51631768-51650477	chr19:51631768-51633147	chr19:51641849-51641891;chr19:51639219-51639908;chr19:51650478-51650574	chr19:51633148-51633567			93.18	96.73	93.75	91.67	95.85	91.80	86.99	86.52	95.35	91.03	94.09	87.10	87.30	92.22	97.56	88.70	86.63	76.19	94.64	94.03	90.60	92.86	93.25	95.35	92.66	93.02	92.93	92.05	90.96	89.29	96.00	97.37	95.93	91.49	93.33	88.24	93.65	93.10	-0.55	0.957295	0.972989
N	cassette	SPPL2A	chr15	-	chr15:51017521-51018517;chr15:51014399-51018517	chr15:51017521-51018269,chr15:51014399-51018269;chr15:51018324-51018517		chr15:51018270-51018323			29.48	39.34	37.60	55.88	54.84	46.67	18.97	18.98	19.26	31.71	39.13	24.53	15.53	11.54	12.50	14.14	22.45	20.00	50.00	33.91	42.86	36.73	36.47	38.82	40.91	21.76	30.00	33.33	31.25	39.37	36.94	44.28	45.24	40.54	37.14	36.54	40.12	25.62	-14.50	0.208369	0.709176
K	alternative_acceptor	RNPC3,SH3D21	chr1	+	chr1:104094415-104097655	chr1:104094415-104095895		chr1:104095896-104097655	chr1:104097655-104097656		45.45	36.36	68.75	18.18	26.09	12.50	NA	NA	8.33	NA	NA	NA	NA	NA	25.00	NA	NA	NA	24.14	42.86	31.58	NA	55.00	90.00	19.23	47.06	46.43	NA	43.75	NA	46.15	56.00	12.90	50.00	70.00	52.63	21.69	45.80	24.11	0.018997	0.517395
N	alternative_donor	TUBGCP2,UROS	chr10	-	chr10:135107274-135111455	chr10:135107274-135107419		chr10:135107420-135111455	chr10:135111455-135111456		10.81	10.53	17.50	NA	0.00	NA	1.43	4.17	4.00	11.11	4.65	7.14	2.94	6.67	10.00	5.56	7.14	10.00	NA	9.52	NA	10.00	11.76	NA	15.38	14.29	9.30	7.69	10.53	NA	10.00	11.11	NA	13.04	10.00	12.00	6.73	9.76	3.03	0.663152	0.849947
N	jcn_only_AA	STARD3	chr17	+	chr17:37814776-37814974;chr17:37814776-37814991	chr17:37814776-37814961		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		3.85	8.51	0.00	0.00	0.00	NA	0.00	3.03	0.00	6.52	0.00	4.00	2.33	3.92	0.00	0.00	0.00	0.00	0.00	2.70	0.00	2.86	3.08	0.00	0.00	3.64	5.56	0.00	3.51	11.76	8.82	2.63	3.45	4.26	5.56	2.50	1.17	3.75	2.58	0.267889	0.663989
N	alternative_acceptor	GAA	chr17	+	chr17:78079694-78081355	chr17:78079694-78079876		chr17:78079877-78081355	chr17:78081355-78081356		0.00	3.23	1.61	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	-1.61	0.096163	0.598353
K	cassette	CALCOCO2	chr17	+	chr17:46933550-46939637	chr17:46933550-46937675;chr17:46937812-46939637		chr17:46937676-46937811			100.00	100.00	100.00	NA	100.00	100.00	100.00	98.44	100.00	97.78	100.00	96.83	100.00	100.00	97.96	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.24	100.00	94.74	95.83	100.00	100.00	97.78	100.00	98.80	100.00	100.00	0.00	0.225869	0.709176
K	jcn_only_AA	SLC43A3	chr11	-	chr11:57193826-57194060;chr11:57193790-57194060	chr11:57193863-57194060		chr11:57193790-57193825;chr11:57193826-57193862	chr11:57193789-57193790;chr11:57193825-57193826		21.18	0.00	15.60	NA	28.57	NA	21.71	26.73	25.71	36.34	23.89	33.90	12.64	28.32	24.14	21.81	18.11	25.63	NA	17.86	7.14	25.44	25.71	28.73	0.00	21.24	16.50	33.68	18.92	29.17	11.36	14.93	NA	27.94	17.73	23.17	6.32	21.21	14.89	0.093421	0.663989
K	intron_retention	CSNK1D	chr17	-	chr17:80203916-80206750				chr17:80203915-80203916;chr17:80206750-80206751		7.69	11.90	18.37	6.06	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	1.03	1.10	1.30	1.98	3.12	0.00	0.00	10.53	2.33	5.41	4.00	5.77	7.14	4.65	11.63	6.82	5.77	2.04	4.65	9.43	5.56	7.55	18.42	6.49	3.29	4.65	1.36	0.869392	1.000000
K	intron_retention	CUEDC1	chr17	-	chr17:55944777-55945510				chr17:55944776-55944777;chr17:55945510-55945511		19.57	6.25	33.33	NA	12.50	NA	2.50	2.38	0.00	0.00	2.50	0.00	9.62	2.56	0.00	10.00	0.00	0.00	0.00	25.00	6.67	23.08	16.67	15.38	12.50	24.00	14.81	15.38	11.90	6.25	21.74	18.18	0.00	17.86	20.00	27.03	4.38	20.66	16.28	0.129348	1.000000
N	alternative_donor	S100A11,SMG5	chr1	-	chr1:156233362-156236075;chr1:156233362-156235571	chr1:156233362-156234104		chr1:156234105-156235571;chr1:156235572-156236075	chr1:156235571-156235572;chr1:156236075-156236076		0.00	4.17	1.64	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	2.38	5.88	0.00	1.69	0.00	0.00	0.00	0.00	0.00	NA	2.38	0.00	2.33	2.08	0.00	-2.08	0.190773	0.566251
K	intron_retention		chr11	+	chr11:823856-823997				chr11:823855-823856;chr11:823997-823998		4.69	8.38	10.00	0.00	8.93	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	6.30	6.58	7.65	2.27	4.50	7.14	11.96	1.92	4.57	0.00	3.08	0.00	11.63	8.86	14.11	4.35	5.17	2.13	7.34	3.31	-4.04	0.588830	1.000000
K	intron_retention	TPT1	chr13	-	chr13:45911689-45912794				chr13:45911688-45911689;chr13:45912794-45912795		30.00	29.03	35.29	26.92	25.00	16.67	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	5.26	7.14	0.00	0.00	18.52	45.00	16.67	54.55	26.09	41.67	11.76	25.00	25.93	21.43	16.67	22.58	48.28	39.47	40.00	40.74	40.91	35.14	18.52	27.50	8.98	0.902135	1.000000
N	alternative_acceptor		chr14	+	chr14:100608131-100608344;chr14:100608131-100610044;chr14:100608131-100610350	chr14:100608131-100610037		chr14:100608345-100610037;chr14:100610038-100610044;chr14:100610045-100610350	chr14:100610037-100610038;chr14:100610044-100610045;chr14:100610350-100610351		96.15	97.67	NA	92.31	97.98	91.67	98.92	100.00	100.00	100.00	98.25	100.00	97.83	100.00	NA	100.00	97.06	NA	99.21	93.75	97.67	NA	97.65	100.00	96.67	92.86	NA	92.31	97.62	100.00	100.00	NA	98.23	92.31	96.88	100.00	98.03	98.08	0.05	0.521380	0.806364
K	cassette	CHMP3,RNF103-CHMP3	chr2	-	chr2:86756521-86790426	chr2:86756521-86769374;chr2:86769436-86790426		chr2:86769375-86769435			94.20	89.47	91.53	96.77	98.11	97.44	95.16	96.30	95.65	96.08	98.09	96.08	96.48	100.00	94.94	97.44	99.42	98.06	96.30	96.72	96.00	97.50	95.38	96.43	100.00	97.10	94.00	96.08	97.75	94.81	95.24	92.16	100.00	93.44	96.83	96.34	96.39	96.51	0.12	0.845704	0.949198
N	alternative_acceptor	UBAC1	chr9	-	chr9:138838218-138839643	chr9:138838902-138839643		chr9:138838218-138838901	chr9:138838217-138838218		1.89	3.57	4.05	NA	0.00	NA	0.96	2.63	0.00	0.00	0.81	0.00	1.42	0.00	4.35	0.00	0.68	NA	0.00	3.33	0.00	NA	1.59	NA	0.00	2.86	3.45	0.00	3.45	NA	0.00	1.82	3.03	2.70	5.48	8.33	1.19	2.26	1.07	0.743667	0.903518
K	intron_retention		chr3	+	chr3:127394958-127395114				chr3:127394957-127394958;chr3:127395114-127395115		5.26	0.00	7.55	NA	6.25	NA	2.17	1.89	0.00	0.00	0.00	0.00	0.00	2.22	3.70	0.00	2.70	0.00	0.00	12.50	0.00	0.00	4.76	0.00	4.35	5.88	5.36	0.00	1.75	0.00	15.62	8.11	8.70	0.00	9.38	10.00	1.08	5.57	4.49	0.313479	1.000000
N	alternative_first_exon	AL136419.6,MDP1,NEDD8-MDP1	chr14	-	chr14:24685004-24685093;chr14:24685004-24687338;chr14:24685004-24685124	chr14:24685004-24686391	chr14:24687339-24687421;chr14:24685125-24685273	chr14:24686392-24686429			0.00	0.00	0.00	NA	7.69	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	6.25	NA	0.00	NA	0.00	0.00	0.00	0.373901	0.548525
N	jcn_only_AA	KXD1	chr19	+	chr19:18668725-18671209;chr19:18668725-18672845	chr19:18668725-18671229					3.03	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.50	0.00	3.17	0.00	1.52	0.00	0.00	0.00	1.59	0.00	NA	4.35	0.00	0.00	2.44	2.63	NA	0.00	2.33	2.63	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.367767	0.663989
N	coord_cassette	CD47	chr3	-	chr3:107766140-107776323	chr3:107766140-107768465;chr3:107768499-107769424;chr3:107769450-107770785;chr3:107770818-107776323		chr3:107768466-107768498;chr3:107769425-107769449;chr3:107770786-107770817			47.06	53.85	52.94	92.31	91.30	80.56	27.27	25.64	12.50	60.00	61.11	66.67	16.67	25.71	23.08	62.50	54.55	64.29	40.00	33.33	40.00	NA	60.00	58.33	46.15	20.41	29.63	63.64	56.25	57.58	31.25	43.48	44.00	66.67	70.00	52.00	42.00	28.48	-13.52	0.299215	0.643829
N	jcn_only_AA	CPSF1	chr8	-	chr8:145619490-145619593	chr8:145619516-145619593		chr8:145619490-145619515	chr8:145619489-145619490		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	cassette	ACTR1A	chr10	-	chr10:104240930-104242767;chr10:104240930-104243916;chr10:104241656-104242767	chr10:104241656-104241757,chr10:104240930-104241757;chr10:104241933-104242767,chr10:104241933-104243916		chr10:104241758-104241932			100.00	100.00	99.17	95.83	97.33	96.55	100.00	100.00	100.00	97.22	96.92	100.00	99.21	99.40	99.38	97.50	94.03	97.18	92.75	100.00	98.78	95.65	94.12	97.96	100.00	100.00	98.02	96.36	98.44	100.00	97.40	98.99	100.00	97.06	99.09	98.35	100.00	100.00	0.00	0.545567	0.816194
N	alternative_acceptor	CD33	chr19	+	chr19:51738509-51738772;chr19:51738509-51738849	chr19:51738509-51738785		chr19:51738773-51738785;chr19:51738786-51738849	chr19:51738785-51738786;chr19:51738849-51738850		8.33	1.27	0.00	NA	0.00	NA	2.80	0.00	4.76	0.00	0.97	5.17	3.03	NA	0.00	2.86	2.33	9.38	2.86	8.70	0.00	0.00	3.85	0.00	0.00	4.35	6.74	0.00	5.08	0.00	13.33	5.26	4.76	2.22	10.00	5.97	2.83	8.33	5.50	0.116911	0.606219
N	cassette	NDUFB6	chr9	-	chr9:32553943-32572878;chr9:32553943-32570957	chr9:32553943-32558907;chr9:32558953-32570957,chr9:32558953-32572878		chr9:32558908-32558952			95.18	95.91	96.15	95.71	96.97	97.41	96.84	100.00	92.31	96.43	94.44	100.00	96.47	95.45	97.37	97.44	100.00	100.00	94.58	93.44	93.87	98.31	95.76	100.00	100.00	100.00	96.39	91.89	100.00	97.44	89.86	95.88	92.96	98.13	96.33	97.17	96.19	95.31	-0.88	0.806779	0.936947
K	intron_retention	RPS21	chr20	+	chr20:60963421-60963512				chr20:60963420-60963421;chr20:60963512-60963513		0.96	1.96	3.05	1.03	1.11	1.14	2.06	1.43	3.54	0.92	2.71	1.08	2.87	1.79	2.03	3.17	2.14	1.91	3.05	6.15	4.07	2.58	4.39	4.33	1.81	3.64	1.08	1.24	2.33	1.67	5.62	4.88	3.65	2.21	1.85	2.88	2.46	2.71	0.25	0.995743	1.000000
K	intron_retention	TBC1D17	chr19	+	chr19:50384733-50385297				chr19:50384732-50384733;chr19:50385297-50385298		67.65	15.79	62.50	NA	21.05	NA	3.57	90.91	43.75	NA	11.76	NA	5.00	88.24	51.16	NA	8.70	NA	NA	75.00	57.14	50.00	54.55	73.91	12.50	83.33	44.12	53.85	22.73	58.82	47.62	23.81	9.09	31.82	59.38	59.38	9.09	79.16	70.07	0.010741	1.000000
K	intron_retention	EEF2	chr19	-	chr19:3977346-3977425				chr19:3977345-3977346;chr19:3977425-3977426		1.71	0.47	1.78	0.34	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	3.95	1.71	0.79	0.55	1.30	0.00	1.30	0.87	0.29	0.42	0.59	8.91	3.96	1.97	0.84	0.64	0.77	0.23	1.50	1.27	0.363960	1.000000
K	cassette	BCL6	chr3	-	chr3:187443418-187446147	chr3:187443418-187444518;chr3:187444687-187446147		chr3:187444519-187444686			97.19	100.00	95.63	100.00	85.71	NA	97.22	97.06	93.58	92.42	92.94	93.60	93.18	94.74	92.00	93.88	93.55	93.75	NA	97.89	95.24	91.78	91.36	95.51	90.00	98.51	94.41	98.48	89.47	93.55	100.00	97.14	NA	95.06	98.41	96.06	95.20	97.54	2.34	0.352479	0.709176
N	alternative_acceptor	VPS33B	chr15	-	chr15:91542285-91542906	chr15:91542325-91542906		chr15:91542285-91542324	chr15:91542284-91542285		5.00	5.36	2.22	5.56	4.26	6.00	0.00	0.00	4.76	NA	NA	NA	0.00	0.00	3.85	NA	0.00	0.00	3.51	4.00	4.35	15.38	5.41	5.00	1.72	3.45	2.13	0.00	3.57	4.17	2.27	4.48	4.35	3.57	0.00	8.51	2.61	2.86	0.25	0.977371	0.994346
K	intron_retention		chr19	+	chr19:2476629-2477026				chr19:2476628-2476629;chr19:2477026-2477027		5.26	0.00	3.28	2.03	0.00	1.95	0.00	0.00	0.81	1.00	0.00	1.10	0.00	1.37	0.85	0.31	0.00	1.32	3.85	7.32	5.00	3.65	2.04	2.19	0.00	2.22	1.11	1.74	0.00	2.16	13.82	11.19	21.21	3.99	9.76	2.67	0.00	3.74	3.74	0.987724	1.000000
K	intron_retention	NADK	chr1	-	chr1:1685089-1685489				chr1:1685088-1685089;chr1:1685489-1685490		14.04	24.39	18.06	5.88	5.71	0.00	0.82	1.30	1.61	4.76	2.82	4.76	1.79	2.20	3.43	4.26	2.99	0.00	3.85	8.33	6.45	6.67	12.77	10.20	12.24	7.19	16.67	12.24	7.14	5.66	6.07	11.51	7.81	18.37	15.91	9.79	5.83	6.63	0.80	0.933032	1.000000
N	alternative_acceptor		chr17	+	chr17:78219056-78219826;chr17:78219056-78219238	chr17:78219056-78219952		chr17:78219239-78219826;chr17:78219827-78219952	chr17:78219826-78219827;chr17:78219952-78219953		89.47	92.31	95.24	91.67	93.75	NA	100.00	100.00	NA	96.88	98.61	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	88.46	NA	87.88	89.74	88.89	NA	90.32	95.83	96.67	98.11	100.00	89.19	88.00	100.00	88.00	90.48	89.53	100.00	89.47	-10.53	0.032439	0.560254
K	intron_retention	UROD	chr1	+	chr1:45480249-45480407				chr1:45480248-45480249;chr1:45480407-45480408		2.56	1.80	8.11	2.82	3.31	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	1.20	0.00	0.00	2.12	8.33	4.62	5.56	4.04	0.00	2.99	6.06	6.56	2.17	3.45	0.00	10.42	9.28	3.50	2.74	4.94	2.47	1.96	4.31	2.35	0.465273	1.000000
K	cassette	UFD1L	chr22	-	chr22:19455527-19466605	chr22:19455527-19459209;chr22:19459332-19466605		chr22:19459210-19459331			89.19	100.00	100.00	89.47	96.97	100.00	93.10	92.31	92.59	93.33	100.00	92.59	100.00	100.00	100.00	97.62	95.83	96.43	100.00	95.12	93.75	100.00	100.00	100.00	100.00	97.87	95.45	100.00	94.12	92.31	94.59	97.92	100.00	100.00	95.00	97.67	100.00	94.86	-5.14	0.069611	0.624766
N	alternative_acceptor	PYGL	chr14	-	chr14:51372324-51374988;chr14:51372861-51374988	chr14:51372275-51374988		chr14:51372275-51372323;chr14:51372324-51372860	chr14:51372274-51372275;chr14:51372323-51372324		98.01	97.49	94.69	100.00	98.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	96.83	97.93	98.08	97.56	100.00	98.36	98.33	96.75	100.00	98.12	100.00	100.00	95.65	97.20	100.00	98.33	100.00	98.28	99.16	0.88	0.675340	0.880186
N	cassette	CSNK1D	chr17	-	chr17:80210404-80213304;chr17:80210481-80213304;chr17:80210481-80223561	chr17:80210481-80210891,chr17:80210404-80210891;chr17:80211121-80223561,chr17:80211121-80213304		chr17:80210892-80211120			98.77	89.47	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.67	NA	100.00	100.00	100.00	100.00	100.00	97.14	97.09	100.00	98.88	100.00	100.00	100.00	100.00	0.00	0.542433	0.813649
K	jcn_only_AD	CD151	chr11	+	chr11:837613-837941	chr11:837619-837941		chr11:837613-837618	chr11:837612-837613		96.23	100.00	100.00	100.00	96.81	100.00	96.76	96.10	100.00	95.73	97.13	93.18	98.73	100.00	96.80	96.72	98.42	97.52	100.00	100.00	98.14	97.44	96.58	93.33	100.00	96.26	96.64	97.41	98.13	97.80	96.77	97.06	97.93	97.56	95.42	96.83	99.37	96.52	-2.85	0.192562	0.657607
K	alternative_last_exon	LEPROTL1,RP11-383J24.1	chr8	+	chr8:29962003-29962249,chr8:29962003-29974650;chr8:29962003-29994787	chr8:29962003-29963261	chr8:29994788-29995864	chr8:29963262-29966040			50.98	50.00	52.38	NA	81.25	NA	91.30	85.19	81.58	81.25	89.74	92.86	91.49	86.67	95.65	90.91	91.43	NA	83.33	60.00	67.65	NA	70.27	NA	73.68	64.00	52.00	NA	80.00	NA	52.38	44.68	58.70	73.33	87.50	55.56	78.50	62.00	-16.50	0.410731	0.568000
N	alternative_acceptor	TRIM21	chr11	-	chr11:4408221-4409529	chr11:4409220-4409529		chr11:4408221-4409219	chr11:4408220-4408221		7.87	0.00	8.00	NA	0.00	NA	0.00	0.74	0.98	0.00	0.00	1.32	0.00	0.77	1.90	1.22	0.00	1.33	NA	5.62	5.00	6.45	5.71	10.98	NA	4.13	11.11	4.17	3.85	3.61	4.17	8.22	0.00	8.47	5.00	8.70	0.00	4.15	4.15	0.018790	0.517395
K	alternative_acceptor	GPS2,RP11-542C16.2	chr17	-	chr17:7216417-7216530	chr17:7216444-7216530		chr17:7216417-7216443	chr17:7216416-7216417		100.00	93.10	94.00	93.65	94.23	95.65	100.00	96.15	92.59	96.55	97.37	95.45	96.77	94.12	93.94	96.30	95.56	93.10	88.07	95.12	93.55	92.00	95.65	100.00	93.13	92.00	96.23	100.00	95.74	94.23	90.32	89.55	92.13	92.31	96.00	94.34	93.11	94.62	1.51	0.736182	0.902878
K	jcn_only_AD	EXOC3	chr5	+	chr5:462423-464404	chr5:462645-464404		chr5:462423-462644	chr5:462422-462423		0.00	0.00	0.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	4.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	1.67	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.189478	0.657607
K	jcn_only_AD	SNRPE	chr1	+	chr1:203831084-203832790	chr1:203831351-203832790		chr1:203831084-203831350	chr1:203831083-203831084		100.00	98.79	95.16	100.00	100.00	100.00	99.17	100.00	100.00	100.00	97.80	100.00	100.00	100.00	100.00	99.05	98.25	100.00	97.41	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	100.00	100.00	98.80	85.71	89.19	98.98	100.00	98.90	96.15	99.08	100.00	0.92	0.575460	0.788633
N	jcn_only_AD	PPP6R2	chr22	+	chr22:50862044-50869601	chr22:50868600-50869601		chr22:50862044-50868599	chr22:50862043-50862044		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.33	0.00	0.00	4.00	0.00	NA	5.41	0.00	0.00	0.00	8.33	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.189478	0.657607
N	jcn_only_AD	AGER	chr6	-	chr6:41653976-41655490	chr6:41653976-41654831					100.00	100.00	90.91	100.00	95.56	NA	100.00	100.00	100.00	100.00	95.06	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.08	NA	100.00	100.00	96.77	100.00	100.00	NA	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AA	ABCD4	chr14	-	chr14:74753233-74753403	chr14:74753270-74753403		chr14:74753233-74753269	chr14:74753232-74753233		0.00	0.00	0.00	0.00	12.50	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	NA	0.00	NA	8.11	0.00	0.00	NA	0.00	0.00	0.00	6.25	8.70	0.00	5.88	0.00	2.56	0.00	-2.56	0.085264	0.663989
N	alternative_last_exon		chr14	+	chr14:24568930-24571961	chr14:24568930-24569203	chr14:24571962-24572099	chr14:24569204-24569771			100.00	100.00	100.00	NA	100.00	NA	97.44	100.00	100.00	86.67	91.67	100.00	100.00	96.97	96.77	100.00	92.59	85.71	92.31	97.50	95.65	NA	95.45	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	94.44	98.72	100.00	1.28	0.442156	0.595949
K	jcn_only_AA	ZNF706	chr8	-	chr8:102214676-102217662;chr8:102213972-102217662	chr8:102216922-102217662					0.00	2.20	0.00	0.00	1.10	0.00	0.73	0.00	0.00	3.42	1.93	3.19	2.27	0.00	1.04	3.49	1.75	5.83	3.70	0.00	0.00	1.14	0.00	1.72	0.00	0.00	0.00	1.12	0.79	2.27	3.23	0.00	3.45	1.79	1.09	2.67	2.24	0.00	-2.24	0.088294	0.663989
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67811121-67811264;chr11:67811121-67811280	chr11:67811121-67811311		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		3.03	0.00	6.49	4.17	0.00	NA	0.00	0.65	1.53	0.53	1.37	0.00	1.33	1.52	1.61	2.42	2.20	0.00	4.35	4.82	2.15	6.17	4.88	2.41	0.00	4.64	3.90	4.30	2.80	6.12	6.92	6.32	11.11	5.81	6.41	5.70	0.67	3.83	3.17	0.705471	0.869353
N	cassette	TOM1	chr22	+	chr22:35713955-35718991;chr22:35713955-35719020	chr22:35713955-35717951;chr22:35718031-35718991,chr22:35718031-35719020		chr22:35717952-35718030			98.16	100.00	98.12	100.00	100.00	NA	100.00	98.52	97.93	95.83	94.87	98.21	100.00	100.00	98.47	96.06	96.81	94.83	100.00	100.00	98.36	100.00	97.76	98.44	100.00	100.00	98.73	98.80	98.59	98.96	100.00	99.05	94.74	98.36	98.04	98.12	100.00	100.00	0.00	0.742924	0.915032
K	alternative_acceptor	LIN37,ZNF429	chr19	+	chr19:36239660-36243076	chr19:36239660-36242951		chr19:36242952-36243076	chr19:36243076-36243077		3.03	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	7.14	3.12	0.00	5.56	0.00	5.56	0.00	0.00	0.00	0.00	0.00	6.45	2.17	0.00	0.00	3.33	0.00	1.61	1.51	-0.10	0.791640	0.923032
N	alternative_donor	MLKL	chr16	-	chr16:74706437-74708857	chr16:74706437-74707797		chr16:74707798-74708857	chr16:74708857-74708858		1.63	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	NA	NA	0.00	NA	1.01	0.00	NA	0.00	0.00	NA	1.08	1.41	0.00	0.00	0.00	0.00	1.03	0.00	3.45	9.09	3.12	0.00	1.04	1.04	0.030687	0.340056
N	jcn_only_AD	CSNK1A1	chr5	-	chr5:148876424-148885009;chr5:148876424-148884243;chr5:148876424-148878532	chr5:148876424-148885045		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		48.11	48.39	44.19	51.35	42.25	45.00	47.52	47.52	44.85	42.48	42.58	45.95	51.06	44.96	48.82	37.59	39.33	32.32	56.52	44.58	45.65	36.62	52.29	50.00	30.00	50.86	45.13	38.10	47.12	47.06	35.71	38.89	66.67	45.77	50.41	49.21	49.73	46.24	-3.48	0.408206	0.671935
N	jcn_only_AD	C1orf122	chr1	+	chr1:38274112-38274202;chr1:38265872-38274202	chr1:38273979-38274202		chr1:38265872-38273978;chr1:38273979-38274111	chr1:38265871-38265872;chr1:38273978-38273979		65.71	100.00	65.24	86.32	92.31	81.25	71.43	71.84	80.83	94.17	94.12	90.32	83.33	80.00	88.89	92.13	92.00	91.53	85.29	67.21	66.84	79.55	86.05	88.64	87.50	51.11	66.44	82.14	76.67	70.65	63.79	77.98	90.48	82.14	94.12	82.69	86.40	66.46	-19.94	0.004733	0.177805
N	jcn_only_AA	RHOC	chr1	-	chr1:113248875-113249699;chr1:113247819-113249699;chr1:113247746-113249699;chr1:113247791-113249699	chr1:113247824-113249699		chr1:113247746-113247790;chr1:113247791-113247818;chr1:113247819-113247823;chr1:113247824-113248874	chr1:113247745-113247746;chr1:113247790-113247791;chr1:113247818-113247819;chr1:113247823-113247824		1.59	0.00	7.69	11.11	0.00	0.00	3.23	1.26	3.57	4.96	3.77	2.20	0.00	2.99	0.00	0.00	0.00	1.23	0.00	3.92	0.00	7.14	11.36	4.30	0.00	7.95	5.88	7.25	2.44	3.12	0.00	2.56	0.00	6.06	0.00	4.21	0.00	2.29	2.29	0.097560	0.663989
N	alternative_acceptor	CPNE1	chr20	-	chr20:34214749-34215201;chr20:34214726-34215201;chr20:34214775-34215201	chr20:34214723-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		0.00	0.00	0.00	0.00	0.00	0.00	78.72	78.95	80.00	72.73	89.47	90.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.998395	1.000000
N	jcn_only_AD	CDC37L1	chr9	+	chr9:4701924-4706010	chr9:4702029-4706010		chr9:4701924-4702028	chr9:4701923-4701924		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.75	100.00	100.00	97.96	100.00	96.00	100.00	100.00	0.00	0.391002	0.657607
K	intron_retention	TNFRSF1A	chr12	-	chr12:6442314-6442532				chr12:6442313-6442314;chr12:6442532-6442533		5.22	8.97	5.03	3.03	4.95	NA	0.00	0.34	0.00	0.00	0.00	0.00	0.34	0.32	0.43	1.01	0.42	0.00	3.85	3.61	2.86	2.53	2.69	2.38	10.26	3.70	2.89	1.42	0.68	1.35	9.16	8.75	5.88	4.46	4.35	4.20	4.87	3.66	-1.21	0.916500	1.000000
K	alternative_acceptor	ACADM	chr1	+	chr1:76227056-76228977	chr1:76227056-76228376		chr1:76228377-76228977	chr1:76228977-76228978		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.68	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	0.00	0.491690	0.791230
N	coord_cassette	DRAM1	chr12	+	chr12:102295212-102314993	chr12:102295212-102301963;chr12:102302142-102307951;chr12:102308011-102314993		chr12:102301964-102302141;chr12:102307952-102308010			96.92	NA	95.19	92.31	84.62	82.35	95.92	98.60	98.03	98.20	92.68	95.16	94.34	94.89	95.03	95.60	91.67	93.68	81.82	93.91	100.00	96.97	100.00	95.97	NA	97.28	94.74	98.15	100.00	97.71	96.67	93.75	100.00	93.65	96.39	93.96	95.13	96.80	1.67	0.457384	0.692112
N	cassette	ARL3	chr10	-	chr10:104449701-104465102	chr10:104449701-104459129;chr10:104459247-104465102		chr10:104459130-104459246			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SBF1	chr22	-	chr22:50885883-50885950				chr22:50885882-50885883;chr22:50885950-50885951		6.78	5.71	3.64	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	7.69	4.17	2.44	8.00	0.00	0.00	1.72	0.00	0.00	0.00	10.00	4.17	8.20	2.08	0.00	2.94	1.43	0.00	-1.43	0.853163	1.000000
N	jcn_only_AA	ING4	chr12	-	chr12:6761585-6761827;chr12:6761582-6761827	chr12:6761476-6761827		chr12:6761476-6761581;chr12:6761582-6761584	chr12:6761475-6761476;chr12:6761581-6761582		0.00	0.00	4.88	NA	5.26	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.26	5.26	NA	11.54	NA	0.00	0.00	7.69	NA	6.67	NA	0.00	2.63	8.82	NA	6.67	NA	0.00	2.78	4.76	NA	4.35	0.00	0.00	0.00	0.00	0.672747	0.854354
N	alternative_donor	GPX1	chr3	-	chr3:49395181-49395472;chr3:49395181-49395466;chr3:49395181-49395459;chr3:49395181-49395269	chr3:49395181-49395597		chr3:49395270-49395459;chr3:49395460-49395466;chr3:49395467-49395472;chr3:49395473-49395597	chr3:49395459-49395460;chr3:49395466-49395467;chr3:49395472-49395473;chr3:49395597-49395598		3.07	5.91	2.34	4.87	5.48	5.01	0.47	1.11	0.98	1.10	1.13	1.51	1.37	1.18	1.05	1.24	1.40	0.79	6.44	4.23	0.90	3.45	4.82	3.00	4.04	2.83	4.47	2.09	4.22	2.91	4.70	4.93	5.13	4.99	4.31	3.38	4.58	2.95	-1.63	0.400932	0.664667
K	intron_retention		chr19	-	chr19:49951320-49952731				chr19:49951319-49951320;chr19:49952731-49952732		15.79	6.10	12.68	10.00	11.36	12.50	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	4.26	0.00	6.67	10.34	6.90	7.69	17.24	26.32	13.11	12.50	13.24	16.67	17.24	14.29	20.00	21.05	4.35	10.71	19.44	21.21	5.22	11.42	6.20	0.483862	1.000000
N	alternative_acceptor	SAFB	chr19	+	chr19:5664451-5667056;chr19:5664451-5666345	chr19:5664451-5666481		chr19:5666346-5666481;chr19:5666482-5667056	chr19:5666481-5666482;chr19:5667056-5667057		2.38	1.08	4.04	0.97	0.75	1.43	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	2.22	0.00	0.00	0.00	1.29	1.43	1.42	1.59	2.50	3.39	0.66	2.13	5.05	1.79	1.23	1.08	0.97	1.75	1.84	2.90	1.52	4.76	1.19	1.20	0.01	0.951776	0.990505
N	jcn_only_AD	TMEM176A	chr7	+	chr7:150501808-150501914;chr7:150501574-150501914	chr7:150501561-150501914		chr7:150501561-150501573;chr7:150501574-150501807	chr7:150501560-150501561;chr7:150501573-150501574		87.70	77.78	89.14	100.00	95.83	95.65	90.45	91.22	88.43	81.43	92.73	90.16	92.75	90.40	86.39	89.83	91.60	91.80	91.68	89.24	90.25	90.09	91.67	91.54	92.00	90.36	92.08	92.94	93.56	92.14	90.85	92.12	92.92	92.21	93.21	93.33	91.84	90.38	-1.46	0.886815	0.943380
N	alternative_acceptor	SMCO4	chr11	-	chr11:93212451-93232441;chr11:93212670-93232441;chr11:93214715-93232441	chr11:93212436-93232441		chr11:93212436-93212450;chr11:93212451-93212669;chr11:93212670-93214714	chr11:93212435-93212436;chr11:93212450-93212451;chr11:93212669-93212670		93.06	100.00	95.83	89.66	90.00	87.04	90.91	89.13	91.03	90.14	93.75	84.69	93.10	91.25	86.79	83.67	94.12	86.02	95.45	94.44	88.24	89.58	91.30	87.83	100.00	86.59	92.22	84.21	82.76	77.08	94.74	93.86	100.00	96.77	91.84	90.18	97.72	92.16	-5.57	0.038216	0.560254
K	alternative_donor	CCDC82,CDK2AP2	chr11	-	chr11:67275161-67275471	chr11:67275161-67275330		chr11:67275331-67275471	chr11:67275471-67275472		3.57	6.10	10.00	0.00	3.45	5.88	6.00	22.22	13.64	4.00	4.55	11.76	5.50	14.29	19.35	4.35	2.44	5.88	6.67	0.00	5.71	6.25	6.12	11.76	0.00	9.09	12.90	18.75	7.50	4.17	5.26	11.36	6.12	5.88	10.00	10.53	6.05	7.17	1.12	0.290918	0.650093
K	alternative_acceptor	SAFB	chr19	+	chr19:5667176-5667363	chr19:5667176-5667357		chr19:5667358-5667363	chr19:5667363-5667364		51.52	41.90	35.63	46.59	49.53	51.22	80.95	52.63	75.00	56.00	67.57	75.00	64.86	76.47	67.65	69.05	53.33	63.64	49.69	46.55	47.06	58.14	44.19	46.15	54.37	51.02	45.78	68.18	60.78	53.01	47.86	45.71	40.54	45.45	50.00	46.48	52.03	51.27	-0.76	0.895595	0.963205
N	jcn_only_AD	CLCN7	chr16	-	chr16:1515340-1521624;chr16:1515340-1521991	chr16:1515340-1524834		chr16:1521625-1521991;chr16:1521992-1524834	chr16:1521991-1521992;chr16:1524834-1524835		100.00	91.89	97.92	NA	NA	NA	100.00	100.00	98.36	100.00	100.00	100.00	94.67	100.00	96.77	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	97.92	100.00	100.00	0.00	0.185919	0.657607
N	cassette	SEC11A	chr15	-	chr15:85231006-85259255	chr15:85231006-85234765;chr15:85234876-85259255		chr15:85234766-85234875			92.98	100.00	97.37	100.00	97.37	NA	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	97.92	98.67	100.00	100.00	100.00	95.65	100.00	100.00	98.40	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.65	92.59	100.00	100.00	96.15	100.00	98.89	-1.11	0.561218	0.824117
K	coord_cassette	ANXA2	chr15	-	chr15:60678286-60690141	chr15:60678286-60688571;chr15:60688627-60689456;chr15:60689538-60690141		chr15:60688572-60688626;chr15:60689457-60689537			0.64	0.59	0.22	10.09	4.52	24.24	0.96	1.20	0.99	3.35	1.02	2.27	0.84	1.52	1.11	4.50	0.84	2.08	2.56	0.68	2.37	6.57	1.73	5.38	0.00	0.51	0.34	7.99	3.90	7.39	0.89	0.56	2.63	2.12	1.46	2.01	0.90	0.79	-0.11	0.475115	0.692687
K	intron_retention	HNRNPDL	chr4	-	chr4:83346037-83346715				chr4:83346036-83346037;chr4:83346715-83346716		54.55	54.44	70.91	50.00	61.02	49.25	60.00	NA	25.93	18.18	NA	NA	75.00	50.00	50.00	46.15	64.29	NA	58.93	43.33	62.50	67.21	64.91	56.82	51.52	62.50	68.97	57.14	73.47	53.85	50.00	49.18	48.31	57.75	61.90	63.04	56.69	50.00	-6.69	0.207371	1.000000
K	jcn_only_AA	PROSER1	chr13	-	chr13:39585475-39586219	chr13:39585625-39586219		chr13:39585475-39585624	chr13:39585474-39585475		100.00	100.00	100.00	100.00	93.33	93.75	100.00	92.31	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	NA	87.88	100.00	100.00	100.00	100.00	94.74	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.855957	0.943751
N	alternative_acceptor	MICAL1	chr6	-	chr6:109767105-109767338;chr6:109767066-109767338;chr6:109767079-109767338	chr6:109767156-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		3.28	6.80	7.02	8.82	11.32	5.88	6.67	4.88	0.00	12.50	0.00	0.00	4.76	7.14	0.00	0.00	0.00	NA	8.93	2.63	8.06	4.35	6.67	0.00	6.60	8.97	4.88	13.64	10.00	10.53	7.84	7.14	3.51	8.11	11.43	3.33	6.63	6.01	-0.62	0.753107	0.908687
K	intron_retention		chr17	+	chr17:41165900-41166124				chr17:41165899-41165900;chr17:41166124-41166125		4.75	3.94	7.46	7.62	4.84	5.19	0.00	0.42	0.40	0.00	0.00	0.40	0.00	0.69	0.82	1.39	0.00	1.28	2.73	4.12	1.53	6.98	9.30	5.84	7.14	2.40	6.82	6.91	5.56	4.07	4.36	4.66	2.20	9.17	7.69	4.94	2.46	3.26	0.79	0.848141	1.000000
N	alternative_acceptor	PFKL	chr21	+	chr21:45733905-45736126	chr21:45733905-45735247		chr21:45735248-45736126	chr21:45736126-45736127		1.39	4.35	4.26	NA	0.00	NA	0.64	1.19	0.00	0.00	0.70	0.00	0.56	1.01	1.44	1.57	0.70	0.00	5.26	0.00	0.00	0.00	1.56	3.33	9.68	1.89	3.39	2.78	4.55	3.45	0.00	0.00	0.00	1.85	1.05	2.22	2.49	1.10	-1.39	0.167573	0.660713
K	alternative_acceptor	SCPEP1	chr17	+	chr17:55074417-55075328;chr17:55074417-55075734	chr17:55074417-55075745		chr17:55075329-55075734;chr17:55075735-55075745	chr17:55075734-55075735;chr17:55075745-55075746		95.56	97.30	96.59	100.00	99.60	100.00	99.46	99.29	99.69	100.00	100.00	99.32	99.20	98.75	97.97	99.60	99.27	99.73	95.74	95.88	96.00	99.59	98.43	99.44	94.67	96.19	97.70	98.24	98.79	96.65	96.09	97.49	97.33	98.38	97.66	98.35	97.31	96.14	-1.17	0.756101	0.910562
N	alternative_acceptor		chr19	+	chr19:12858119-12858214	chr19:12858119-12858208		chr19:12858209-12858214	chr19:12858214-12858215		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	98.86	100.00	100.00	100.00	100.00	97.14	100.00	100.00	94.74	100.00	100.00	100.00	97.70	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AD	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298195;chr11:57297708-57298199	chr11:57297708-57298130		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		75.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	85.71	98.72	96.97	100.00	100.00	55.56	100.00	100.00	100.00	100.00	100.00	58.33	100.00	100.00	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	100.00	66.66	-33.34	0.014821	0.285693
K	intron_retention	COPE	chr19	-	chr19:19010519-19010681				chr19:19010518-19010519;chr19:19010681-19010682		60.00	58.04	60.71	51.72	53.26	56.83	62.07	51.85	55.00	47.73	47.83	51.16	61.54	57.89	60.87	39.13	38.60	40.54	45.24	54.55	46.15	56.25	53.49	50.00	64.37	47.37	61.54	45.45	51.72	54.76	50.00	51.85	52.22	51.43	47.83	55.77	59.79	53.20	-6.59	0.782846	1.000000
K	alternative_acceptor	PSEN2	chr1	+	chr1:227079063-227079446	chr1:227079063-227079443		chr1:227079444-227079446	chr1:227079446-227079447		NA	NA	55.00	50.00	46.67	NA	50.00	52.63	53.19	46.15	42.86	53.33	37.50	52.17	48.57	44.19	46.15	30.77	60.00	50.00	32.14	53.57	47.83	59.09	60.00	63.16	44.44	50.00	39.13	44.74	40.00	47.37	NA	50.00	42.86	48.00	55.00	52.17	-2.83	0.966735	0.991031
N	jcn_only_AD	CCDC94	chr19	+	chr19:4258421-4261990	chr19:4261033-4261990		chr19:4258421-4261032	chr19:4258420-4258421		0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.200139	0.657607
K	intron_retention		chr11	-	chr11:62383272-62383977				chr11:62383271-62383272;chr11:62383977-62383978		4.00	4.38	9.33	2.17	3.75	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.03	12.00	0.00	12.50	6.78	18.18	8.49	9.09	3.45	0.00	5.77	0.00	6.90	6.25	8.60	10.00	5.26	10.34	5.21	5.45	0.25	0.883906	1.000000
K	alternative_acceptor	MRPS16	chr10	-	chr10:75009077-75011520	chr10:75010750-75011520		chr10:75009077-75010749	chr10:75009076-75009077		93.75	100.00	100.00	100.00	90.62	100.00	98.31	80.00	95.83	97.06	96.83	88.89	95.16	100.00	92.59	97.78	93.10	100.00	100.00	100.00	93.10	100.00	94.59	100.00	100.00	100.00	100.00	100.00	97.56	100.00	NA	100.00	100.00	95.65	96.77	100.00	100.00	100.00	0.00	0.348522	0.709013
K	jcn_only_AD	DPH1,OVCA2	chr17	+	chr17:1945170-1945898	chr17:1945526-1945898		chr17:1945170-1945525	chr17:1945169-1945170		100.00	35.00	90.00	76.92	87.10	84.62	65.12	96.97	83.33	83.33	84.44	83.33	83.78	93.02	78.05	87.23	82.93	100.00	62.50	100.00	85.71	75.00	78.38	100.00	41.67	100.00	92.31	73.33	77.42	91.67	90.32	100.00	37.50	81.25	88.89	84.00	52.09	98.48	46.40	0.002529	0.161116
N	alternative_donor	STAT3	chr17	-	chr17:40469243-40471873;chr17:40469243-40474299	chr17:40469243-40474302		chr17:40471874-40474299;chr17:40474300-40474302	chr17:40474299-40474300;chr17:40474302-40474303		29.84	17.39	26.40	32.50	33.33	28.81	28.89	33.33	33.00	35.91	26.32	31.72	30.95	26.50	32.93	32.93	29.58	32.63	27.78	31.00	24.24	26.83	30.00	22.56	28.57	33.98	28.81	20.83	27.27	25.87	26.26	25.00	20.00	27.55	27.66	24.54	28.18	30.42	2.25	0.119496	0.530980
K	alternative_acceptor	GRK6	chr5	+	chr5:176868055-176868737	chr5:176868055-176868735		chr5:176868736-176868737	chr5:176868737-176868738		25.00	17.39	10.61	20.00	8.57	NA	32.14	20.00	18.18	42.11	31.25	NA	36.84	25.00	10.00	33.33	26.09	NA	17.39	23.53	21.88	NA	22.73	NA	25.93	29.41	20.00	28.57	20.83	NA	18.18	17.86	20.69	23.53	18.75	NA	23.31	24.27	0.95	0.687025	0.881898
K	cassette	NAGK	chr2	+	chr2:71297970-71299770	chr2:71297970-71298815;chr2:71298958-71299770		chr2:71298816-71298957			100.00	93.96	97.44	100.00	97.04	100.00	100.00	99.61	100.00	100.00	100.00	100.00	100.00	99.62	100.00	100.00	100.00	100.00	99.11	99.06	98.04	97.22	98.65	100.00	96.04	98.74	100.00	100.00	98.43	98.94	97.79	97.26	95.83	100.00	96.39	98.35	97.58	99.34	1.76	0.182295	0.709176
N	alternative_acceptor	APOE	chr19	+	chr19:45409181-45409858	chr19:45409181-45409843		chr19:45409844-45409858	chr19:45409858-45409859		0.00	5.88	0.00	NA	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	1.55	0.00	3.08	2.38	2.70	0.00	1.89	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	2.04	0.00	-2.04	0.071741	0.585944
N	alternative_acceptor	LAIR1	chr19	-	chr19:54872817-54875901;chr19:54872814-54875901;chr19:54874623-54875901	chr19:54872851-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		2.09	0.00	3.76	0.00	3.12	NA	2.72	2.80	2.63	2.01	2.47	1.89	1.68	2.98	3.06	2.45	1.90	1.45	0.00	2.13	1.27	0.00	3.81	7.14	0.00	2.72	2.04	2.86	3.80	3.39	2.87	2.11	0.00	1.69	4.62	2.56	0.00	2.76	2.76	0.010259	0.471722
K	cassette	RTN2	chr19	-	chr19:45991776-45992105	chr19:45991776-45991894;chr19:45991965-45992105		chr19:45991895-45991964			96.97	100.00	96.00	80.00	92.00	NA	100.00	100.00	100.00	100.00	100.00	NA	90.00	93.75	NA	92.31	100.00	NA	100.00	96.67	100.00	93.75	87.50	100.00	NA	94.12	100.00	100.00	95.24	NA	85.71	100.00	76.92	100.00	90.00	100.00	100.00	95.40	-4.60	0.824808	0.941968
K	jcn_only_AA	ERLIN2,NDUFB9	chr8	+	chr8:125551529-125555360	chr8:125551529-125555327		chr8:125555328-125555360	chr8:125555360-125555361		98.51	95.58	99.07	95.69	96.46	93.51	97.69	100.00	98.95	94.61	94.81	93.27	100.00	100.00	100.00	96.47	94.82	95.36	94.71	90.74	94.58	93.97	93.39	100.00	100.00	100.00	98.08	98.10	93.12	93.75	93.10	95.56	93.99	96.97	100.00	97.20	96.63	99.25	2.62	0.975306	0.991558
N	alternative_acceptor	SLC31A2	chr9	+	chr9:115923979-115925028;chr9:115923979-115925310	chr9:115923979-115925614		chr9:115925029-115925310;chr9:115925311-115925614	chr9:115925310-115925311;chr9:115925614-115925615		2.74	0.00	3.24	0.00	3.85	16.67	5.50	1.40	1.66	4.23	5.98	2.43	0.00	0.00	0.85	0.00	0.00	0.87	9.09	2.73	3.23	0.00	3.05	5.26	0.00	2.45	4.46	4.69	3.85	5.13	3.40	4.48	0.00	4.00	0.88	1.97	0.00	2.59	2.59	0.859175	0.951337
K	intron_retention	IGFLR1	chr19	-	chr19:36230671-36231924				chr19:36230670-36230671;chr19:36231924-36231925		67.57	53.39	75.00	64.10	67.48	59.32	68.33	65.00	92.86	54.17	61.02	58.33	64.86	68.42	83.33	63.33	63.33	73.08	54.14	43.24	81.58	42.86	53.85	48.65	66.15	53.85	78.08	75.00	68.14	65.08	52.27	71.23	57.14	48.78	52.46	61.19	61.00	59.42	-1.58	0.980452	1.000000
K	alternative_acceptor	ARRDC1,KIAA1958	chr9	+	chr9:140508222-140508483;chr9:140508222-140508591	chr9:140508222-140508432		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		3.03	3.28	6.67	NA	4.55	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.88	6.25	NA	2.56	NA	6.67	3.45	4.00	NA	0.00	NA	6.25	4.17	0.00	7.69	5.26	0.00	0.00	3.24	3.24	0.385076	0.709013
N	jcn_only_AA		chr22	+	chr22:50636616-50636800	chr22:50636616-50636773		chr22:50636774-50636800	chr22:50636800-50636801		100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.29	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_last_exon	C19orf44	chr19	+	chr19:16628153-16630904	chr19:16628153-16628812	chr19:16630905-16632161	chr19:16628813-16629430			93.10	98.65	91.67	100.00	98.00	100.00	95.24	NA	95.00	94.44	92.59	94.74	96.30	NA	95.24	96.23	90.32	92.86	98.46	95.00	95.24	97.06	96.30	96.67	100.00	92.86	93.75	95.45	97.22	97.14	94.74	94.00	97.53	97.22	94.59	97.56	98.00	93.92	-4.08	0.002893	0.103535
N	alternative_acceptor	AUP1	chr2	-	chr2:74754966-74755066	chr2:74754984-74755066		chr2:74754966-74754983	chr2:74754965-74754966		6.67	14.69	13.04	10.23	11.84	12.20	0.72	0.00	2.63	0.58	1.29	0.68	1.17	1.20	2.56	1.32	0.75	0.00	13.38	11.11	10.34	16.00	14.69	10.43	7.29	10.45	7.30	7.63	9.29	8.39	14.68	15.38	16.45	11.82	9.77	11.76	10.34	8.56	-1.78	0.674785	0.880186
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28847807-28848048;chr16:28847807-28848170;chr16:28847807-28848068;chr16:28847807-28847918	chr16:28847807-28848071		chr16:28847919-28848048;chr16:28848049-28848068;chr16:28848069-28848071;chr16:28848072-28848170	chr16:28848048-28848049;chr16:28848068-28848069;chr16:28848071-28848072;chr16:28848170-28848171		10.17	5.62	18.89	10.00	5.61	2.04	18.92	4.55	1.92	15.38	13.46	20.83	4.26	9.68	12.07	17.65	11.86	5.56	7.69	17.65	4.00	7.69	4.76	13.51	NA	2.63	3.33	7.50	14.75	2.04	24.24	12.93	3.66	3.64	7.35	10.53	5.62	9.93	4.31	0.447821	0.755217
N	jcn_only_AD	VMO1	chr17	-	chr17:4688955-4689251;chr17:4688955-4689265;chr17:4688955-4689195;chr17:4688955-4710221	chr17:4688955-4689231		chr17:4689196-4689231;chr17:4689232-4689251;chr17:4689252-4689265;chr17:4689266-4710221	chr17:4689231-4689232;chr17:4689251-4689252;chr17:4689265-4689266;chr17:4710221-4710222		46.93	56.58	61.11	67.35	53.93	68.22	50.00	35.29	57.14	60.00	37.21	47.50	52.63	48.08	NA	NA	25.00	40.00	43.40	34.48	36.11	NA	60.00	NA	28.77	35.71	34.04	64.29	37.84	45.45	47.53	45.81	54.81	66.67	54.90	66.23	51.31	41.32	-9.99	0.241085	0.657607
K	intron_retention	PSMD6	chr3	-	chr3:63996441-63996553				chr3:63996440-63996441;chr3:63996553-63996554		5.33	0.00	4.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.23	0.00	2.63	1.89	7.25	0.00	4.08	8.43	0.00	1.10	0.85	1.27	5.05	1.12	3.17	3.00	7.29	0.00	2.67	2.67	0.140330	1.000000
K	cassette	STARD3	chr17	+	chr17:37817339-37819056	chr17:37817339-37818503;chr17:37818621-37819056		chr17:37818504-37818620			100.00	100.00	100.00	90.91	97.14	NA	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	NA	100.00	100.00	NA	88.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	95.45	92.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	coord_cassette	DGUOK	chr2	+	chr2:74154180-74185272	chr2:74154180-74166036;chr2:74166150-74173845;chr2:74174034-74185272		chr2:74166037-74166149;chr2:74173846-74174033			70.97	88.64	76.32	76.47	70.00	73.91	100.00	72.73	80.00	NA	85.71	NA	83.33	75.00	88.24	83.33	100.00	NA	66.67	100.00	88.46	83.33	68.75	81.82	100.00	78.95	83.78	75.00	79.17	80.00	82.61	100.00	64.52	76.19	100.00	88.89	85.98	76.97	-9.01	0.632433	0.795482
N	cassette	SAT2	chr17	-	chr17:7530112-7530887;chr17:7530112-7530680;chr17:7529933-7530870	chr17:7529933-7530460,chr17:7530112-7530460;chr17:7530545-7530870,chr17:7530545-7530887,chr17:7530545-7530680		chr17:7530461-7530544			100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.67	98.44	98.39	93.33	98.48	100.00	100.00	98.63	100.00	100.00	98.53	100.00	98.28	98.31	95.65	97.78	100.00	100.00	99.34	99.31	-0.02	0.342270	0.709176
N	alternative_acceptor	CAPN1	chr11	+	chr11:64974291-64975525;chr11:64974291-64975438	chr11:64974291-64975529		chr11:64975439-64975525;chr11:64975526-64975529	chr11:64975525-64975526;chr11:64975529-64975530		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.707177	0.890280
K	intron_retention	TNIP2	chr4	-	chr4:2744248-2746113				chr4:2744247-2744248;chr4:2746113-2746114		15.58	8.57	15.97	3.26	4.48	1.14	0.00	2.17	0.00	1.49	0.00	0.00	0.00	0.00	1.47	0.71	1.85	0.00	0.00	9.30	6.25	6.87	8.33	5.84	0.00	9.18	10.58	1.75	2.60	2.36	8.89	13.91	8.57	7.87	8.70	6.59	0.00	9.04	9.04	0.286469	1.000000
K	alternative_donor	RP11-371E8.4,TMEM251	chr14	+	chr14:93651378-93652604	chr14:93651831-93652604		chr14:93651378-93651830	chr14:93651377-93651378		64.29	52.94	50.00	50.00	52.63	NA	70.21	70.00	61.11	67.35	68.67	54.55	60.00	72.22	54.55	68.75	53.57	NA	36.36	56.25	57.14	60.00	53.19	72.73	NA	60.00	NA	43.75	69.57	NA	61.54	63.16	NA	66.67	56.67	66.67	56.47	62.92	6.45	0.294883	0.650093
K	intron_retention		chr15	-	chr15:51017521-51018269				chr15:51017520-51017521;chr15:51018269-51018270		1.30	0.00	0.72	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	8.33	0.00	2.70	4.08	0.00	0.00	NA	0.00	2.56	0.00	3.45	0.00	3.57	0.00	1.35	1.23	0.00	3.45	3.49	1.25	0.88	0.00	0.00	2.50	3.09	0.00	1.33	1.33	0.203082	1.000000
K	cassette	OTUD5	chrX	-	chrX:48792292-48801450	chrX:48792292-48793461;chrX:48793630-48801450		chrX:48793462-48793629			0.00	0.00	2.04	NA	NA	NA	0.00	1.61	1.75	0.00	2.04	5.26	2.44	0.00	1.85	0.00	0.00	2.70	NA	2.70	0.00	0.00	0.00	3.33	0.00	2.86	0.00	0.00	4.35	9.09	2.94	0.00	NA	5.88	0.00	3.77	0.00	2.16	2.16	0.236906	0.709176
K	intron_retention	PTBP1	chr19	+	chr19:807903-808359				chr19:807902-807903;chr19:808359-808360		1.32	8.00	4.27	NA	0.00	NA	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	1.08	1.16	1.21	0.00	NA	3.28	7.69	1.33	5.26	5.43	0.00	0.00	1.85	0.00	3.12	0.00	6.00	5.06	NA	3.57	3.53	3.81	0.00	0.66	0.66	0.687556	1.000000
K	intron_retention		chr19	-	chr19:3538755-3544806				chr19:3538754-3538755;chr19:3544806-3544807		34.48	26.20	42.86	32.35	34.29	19.26	35.48	23.33	27.59	37.14	36.36	32.43	41.18	22.22	20.83	37.50	40.54	37.50	42.38	46.30	16.51	47.62	49.61	37.84	23.23	22.22	32.61	28.26	31.03	30.23	23.30	31.52	17.92	39.05	30.00	26.85	30.84	23.31	-7.52	0.624939	1.000000
K	intron_retention		chr19	.	chr19:59061403-59061513				chr19:59061402-59061403;chr19:59061513-59061514		8.41	4.43	7.10	4.58	3.94	3.55	0.00	0.00	0.00	0.00	0.53	0.00	1.04	0.00	0.56	0.59	0.51	1.02	4.52	7.14	5.58	5.56	5.23	5.95	3.74	4.35	3.45	3.03	4.38	5.17	15.70	10.83	7.69	3.70	4.67	5.05	4.08	5.74	1.66	0.668807	1.000000
N	alternative_donor	TGFBI	chr5	+	chr5:135379784-135382539;chr5:135382185-135382539	chr5:135382246-135382539		chr5:135379784-135382184;chr5:135382185-135382245	chr5:135379783-135379784;chr5:135382184-135382185		4.44	4.26	6.90	NA	14.81	NA	0.70	1.67	2.44	0.00	1.88	0.00	1.90	0.00	0.00	1.39	2.19	0.00	NA	4.76	NA	0.00	13.41	0.00	0.00	5.00	5.21	7.14	20.31	NA	0.00	6.25	NA	8.82	10.83	1.59	1.30	3.06	1.76	0.510227	0.763046
N	intron_retention		chr3	+	chr3:52557773-52557889				chr3:52557772-52557773;chr3:52557889-52557890		29.03	17.14	21.05	0.94	15.50	0.62	4.49	NA	0.00	0.00	8.20	0.00	10.00	NA	NA	0.00	8.70	0.00	13.97	19.05	17.39	5.26	22.05	0.00	12.23	0.00	32.14	3.08	17.41	0.82	13.33	13.64	15.23	0.00	20.25	0.00	13.10	16.19	3.09	0.999216	1.000000
N	jcn_only_AA	NRP1	chr10	-	chr10:33538857-33542955;chr10:33515218-33542955	chr10:33538478-33542955		chr10:33515218-33538477;chr10:33538478-33538856	chr10:33515217-33515218;chr10:33538477-33538478		0.00	0.00	0.00	9.52	0.00	18.18	0.29	2.08	0.00	0.51	0.50	0.91	0.43	0.00	0.00	1.36	0.56	1.42	0.00	1.89	13.33	0.00	0.00	3.77	0.00	0.00	0.00	4.48	2.15	8.82	0.00	0.00	11.11	3.45	0.00	0.00	0.14	0.00	-0.14	0.513426	0.760908
K	intron_retention	RP11-438J1.1,TATDN2	chr3	+	chr3:10320719-10320904				chr3:10320718-10320719;chr3:10320904-10320905		12.90	4.88	19.23	8.33	9.38	5.88	9.68	8.70	20.00	10.53	5.56	NA	8.11	3.85	11.11	7.69	5.00	NA	13.04	12.50	16.67	0.00	7.69	10.00	9.09	8.00	10.53	NA	11.54	NA	16.67	NA	15.38	13.64	6.45	9.09	9.38	10.60	1.21	0.970780	1.000000
K	jcn_only_AD	DDX56	chr7	-	chr7:44612037-44612172	chr7:44612037-44612161		chr7:44612162-44612172	chr7:44612172-44612173		17.39	13.33	7.69	NA	9.52	NA	4.00	NA	0.00	5.77	4.65	5.00	2.13	0.00	0.00	1.59	5.36	6.25	NA	17.65	0.00	18.92	11.43	7.89	NA	10.00	25.00	8.70	21.43	11.11	17.65	22.73	16.67	15.00	13.16	8.16	8.66	17.39	8.73	0.501917	0.741239
K	intron_retention		chr12	+	chr12:53689726-53690027				chr12:53689725-53689726;chr12:53690027-53690028		6.37	1.37	8.24	1.62	2.77	0.63	0.94	1.94	0.87	0.72	0.54	0.00	1.19	2.94	2.33	0.62	1.03	0.54	1.43	5.94	2.02	6.35	4.73	3.63	1.33	6.33	5.79	2.63	3.34	1.14	5.69	5.63	2.07	5.46	4.79	3.54	1.35	5.82	4.46	0.026579	1.000000
K	coord_cassette	GUSB	chr7	-	chr7:65441190-65445210	chr7:65441190-65444385;chr7:65444529-65444713;chr7:65444899-65445210		chr7:65444386-65444528;chr7:65444714-65444898			96.00	100.00	92.00	NA	93.55	NA	99.60	98.67	100.00	100.00	100.00	100.00	98.14	100.00	100.00	100.00	99.44	100.00	NA	89.47	100.00	100.00	94.92	100.00	NA	95.12	90.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	95.74	97.56	99.80	97.34	-2.46	0.142307	0.643829
K	alternative_acceptor	PITRM1	chr10	-	chr10:3185968-3186483;chr10:3185694-3186483	chr10:3185924-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		16.67	11.76	12.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	0.00	0.00	NA	13.33	0.00	3.92	3.33	3.92	NA	5.88	6.25	0.00	3.33	4.41	3.12	11.11	0.00	0.00	0.00	3.12	0.00	4.50	4.50	0.413119	0.727055
N	cassette	HDAC10	chr22	-	chr22:50687289-50688063;chr22:50687181-50688063;chr22:50687598-50688063	chr22:50687598-50687756,chr22:50687289-50687756,chr22:50687181-50687756;chr22:50687884-50688063		chr22:50687757-50687883			100.00	95.45	93.33	NA	NA	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	84.62	NA	100.00	NA	100.00	100.00	94.74	NA	93.33	NA	90.00	87.50	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.644743	0.869719
N	cassette	DYNLL2	chr17	+	chr17:56161045-56166502	chr17:56161045-56164442;chr17:56164584-56166502		chr17:56164443-56164583			88.89	100.00	88.33	NA	100.00	NA	93.10	90.24	93.10	93.48	96.83	93.33	96.92	90.62	96.23	92.86	95.31	100.00	83.33	92.86	100.00	100.00	97.62	100.00	100.00	100.00	91.18	100.00	95.65	100.00	94.74	90.70	100.00	100.00	100.00	100.00	98.46	91.74	-6.72	0.421749	0.730041
N	jcn_only_AA		chr1	+	chr1:52880320-52880403;chr1:52880320-52880412	chr1:52880320-52880433		chr1:52880404-52880412;chr1:52880413-52880433	chr1:52880412-52880413;chr1:52880433-52880434		100.00	NA	100.00	NA	95.00	92.31	96.77	100.00	100.00	100.00	97.92	92.86	94.12	100.00	93.94	95.56	100.00	90.91	100.00	100.00	100.00	93.33	100.00	94.12	NA	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	98.38	100.00	1.62	0.404826	0.677546
K	jcn_only_AD	C6orf1	chr6	-	chr6:34215270-34215517	chr6:34215270-34215457		chr6:34215458-34215517	chr6:34215517-34215518		81.25	95.00	80.77	80.00	87.88	NA	91.89	91.43	96.30	NA	91.67	NA	87.76	97.06	91.67	89.47	94.74	NA	90.24	90.91	100.00	NA	84.09	NA	93.33	81.82	76.19	83.33	95.56	80.00	81.82	90.48	87.80	90.00	85.19	76.92	91.06	86.36	-4.70	0.263507	0.657607
K	cassette	KMO	chr1	+	chr1:241752133-241753505	chr1:241752133-241753313;chr1:241753416-241753505		chr1:241753314-241753415			100.00	100.00	94.12	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.76	NA	100.00	100.00	99.00	100.00	99.46	100.00	100.00	100.00	100.00	99.33	99.79	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	RP11-1035H13.3,RPS15A	chr16	-	chr16:18799465-18800302;chr16:18799482-18800302	chr16:18799428-18800302		chr16:18799428-18799464;chr16:18799465-18799481	chr16:18799427-18799428;chr16:18799464-18799465		3.28	4.98	3.71	1.47	1.47	2.21	1.87	3.25	2.59	3.80	3.48	4.34	2.04	0.91	2.66	2.15	3.39	3.00	6.61	7.53	5.12	1.82	1.83	1.34	4.77	3.03	2.32	0.92	0.90	1.42	3.30	4.11	8.24	0.95	1.27	0.50	4.88	3.26	-1.61	0.394593	0.712295
N	jcn_only_AA	MYO9B	chr19	+	chr19:17322584-17322809;chr19:17322584-17322868;chr19:17322584-17322703	chr19:17322584-17325268		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		0.00	0.00	0.00	0.00	5.56	0.00	0.00	NA	NA	NA	NA	NA	18.18	NA	NA	NA	NA	NA	0.00	10.00	0.00	16.67	5.45	11.11	0.00	6.45	6.25	0.00	0.00	0.00	0.00	11.11	4.55	21.43	25.00	9.52	0.00	3.23	3.23	0.935362	0.978889
K	cassette	OGFOD3	chr17	-	chr17:80364359-80369330	chr17:80364359-80367243;chr17:80367287-80369330		chr17:80367244-80367286			100.00	100.00	100.00	100.00	100.00	NA	100.00	92.31	96.88	100.00	97.73	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_donor	CSE1L	chr20	+	chr20:47711501-47712885	chr20:47712738-47712885		chr20:47711501-47712737	chr20:47711500-47711501		0.00	0.76	2.78	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.26	0.00	2.13	1.75	4.55	0.54	0.00	3.12	0.00	1.52	0.00	6.67	2.86	0.00	3.12	1.72	3.45	0.00	0.00	0.00	0.216551	0.592980
K	intron_retention	BAX	chr19	+	chr19:49458857-49458943				chr19:49458856-49458857;chr19:49458943-49458944		15.22	11.64	14.60	10.94	11.61	8.11	6.48	4.88	5.93	6.67	6.25	2.94	4.79	4.12	10.62	4.81	4.72	2.50	7.09	15.73	8.33	15.66	14.18	18.18	12.22	12.31	14.61	7.07	11.11	6.85	15.65	20.62	18.90	16.00	16.81	17.65	9.37	13.77	4.40	0.930412	1.000000
K	intron_retention	TIAL1	chr10	-	chr10:121336263-121336591				chr10:121336262-121336263;chr10:121336591-121336592		29.03	40.00	29.23	33.33	30.30	15.38	0.00	0.00	0.00	0.00	4.17	0.00	10.00	4.76	5.45	3.03	1.85	6.25	20.00	9.68	13.46	26.32	21.28	26.67	25.00	17.86	16.67	20.00	22.00	19.44	13.89	21.57	14.29	26.83	26.67	22.73	17.14	11.79	-5.36	0.471373	1.000000
N	jcn_only_AA	SFSWAP	chr12	+	chr12:132283655-132283967	chr12:132283655-132283929		chr12:132283930-132283967	chr12:132283967-132283968		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	MS4A4A	chr11	+	chr11:60048190-60059697	chr11:60048190-60050066;chr11:60050213-60059697		chr11:60050067-60050212			7.47	7.14	5.83	NA	3.03	NA	10.55	11.56	11.70	10.38	15.77	11.76	12.61	14.58	9.09	7.77	14.15	9.86	7.69	12.77	14.29	9.76	10.99	4.69	16.67	12.39	9.26	6.67	11.02	5.00	4.08	3.23	0.00	2.25	3.66	2.42	9.12	11.98	2.86	0.639131	0.868138
K	cassette	CC2D1B	chr1	-	chr1:52819320-52820279	chr1:52819320-52820036;chr1:52820127-52820279		chr1:52820037-52820126			1.37	2.53	4.84	2.33	1.43	2.27	0.00	4.62	4.65	5.41	5.56	0.00	2.70	1.96	5.88	10.00	3.33	0.00	0.00	3.23	3.17	0.00	0.00	2.27	0.00	6.98	3.17	5.41	0.00	1.89	2.63	1.94	0.00	0.00	1.37	2.88	0.00	2.93	2.93	0.030471	0.437072
K	cassette	PIGT	chr20	+	chr20:44049334-44052855	chr20:44049334-44050022;chr20:44050224-44052855		chr20:44050023-44050223			100.00	96.59	97.18	100.00	97.94	96.00	98.61	100.00	98.99	96.83	97.62	96.32	98.29	100.00	98.61	96.20	96.58	95.15	95.45	96.08	94.34	100.00	97.09	100.00	100.00	100.00	100.00	98.39	98.04	98.70	100.00	98.92	98.39	100.00	98.98	98.17	98.34	100.00	1.66	0.147105	0.709176
K	intron_retention	DNAJC4	chr11	+	chr11:64000338-64001365				chr11:64000337-64000338;chr11:64001365-64001366		6.56	2.21	7.58	1.67	1.72	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.47	3.85	2.67	0.00	0.00	0.00	4.82	0.00	3.17	0.00	1.64	0.00	0.00	7.14	3.45	0.00	0.00	1.92	2.83	0.00	-2.83	0.627426	1.000000
K	cassette	SSR2	chr1	-	chr1:155981679-155989803	chr1:155981679-155988042;chr1:155988160-155989803		chr1:155988043-155988159			100.00	100.00	98.67	100.00	98.73	96.30	99.10	100.00	98.39	98.80	99.09	98.61	100.00	97.33	100.00	100.00	100.00	100.00	100.00	100.00	98.78	100.00	100.00	100.00	92.00	99.15	97.30	100.00	100.00	98.51	98.04	100.00	100.00	100.00	100.00	98.31	100.00	99.58	-0.42	0.696207	0.888129
N	jcn_only_AD	C1orf122	chr1	+	chr1:38265872-38274202;chr1:38273979-38274202	chr1:38274112-38274202		chr1:38265872-38273978;chr1:38273979-38274111	chr1:38265871-38265872;chr1:38273978-38273979		34.29	0.00	34.76	13.68	7.69	18.75	28.57	28.16	19.17	5.83	5.88	9.68	16.67	20.00	11.11	7.87	8.00	8.47	14.71	32.79	33.16	20.45	13.95	11.36	12.50	48.89	33.56	17.86	23.33	29.35	36.21	21.10	9.52	17.86	5.88	17.31	13.61	33.54	19.93	0.004733	0.177805
K	intron_retention	SART1	chr11	+	chr11:65735058-65735149				chr11:65735057-65735058;chr11:65735149-65735150		4.92	1.85	4.17	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.35	5.88	0.00	4.00	1.54	0.00	0.00	0.00	1.59	0.00	0.00	2.13	8.06	2.44	6.76	0.00	0.00	2.00	0.93	2.46	1.53	0.982434	1.000000
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4828583-4829462	chr7:4828583-4828872		chr7:4828873-4829462	chr7:4829462-4829463		8.47	1.54	6.67	6.45	2.04	6.67	0.00	3.70	0.00	4.76	0.00	5.88	3.12	0.00	2.78	5.36	0.00	NA	0.00	6.12	5.26	12.12	5.00	14.29	3.57	8.16	7.32	9.52	5.88	6.67	11.43	9.68	3.12	14.58	9.09	19.35	2.33	7.14	4.81	0.043297	0.570243
K	cassette	SRSF7	chr2	-	chr2:38972330-38973835	chr2:38972330-38973285;chr2:38973322-38973835		chr2:38973286-38973321			87.10	91.92	89.62	92.68	94.39	91.76	92.31	93.33	92.31	88.61	94.12	95.83	93.33	89.06	86.84	89.68	95.61	88.89	93.20	90.85	94.92	90.48	93.84	94.25	91.47	93.55	92.75	92.94	93.45	92.86	94.59	91.72	94.97	93.39	92.47	93.90	92.75	92.09	-0.66	0.301581	0.709176
K	intron_retention	ADM	chr11	+	chr11:10327346-10327495				chr11:10327345-10327346;chr11:10327495-10327496		4.98	0.00	5.38	5.81	5.26	5.41	0.00	1.03	0.45	0.65	2.44	1.11	0.00	0.72	1.60	0.83	1.92	1.10	NA	4.10	5.41	4.98	2.35	4.39	NA	3.91	3.40	4.86	5.88	4.26	5.20	5.73	14.29	4.38	3.93	4.81	0.00	4.00	4.00	0.980484	1.000000
K	cassette	CAMK1	chr3	-	chr3:9807575-9809350	chr3:9807575-9807808;chr3:9807898-9809350		chr3:9807809-9807897			0.00	4.10	8.57	0.00	3.61	0.00	5.10	6.67	8.33	3.49	4.42	3.49	5.29	8.33	NA	4.55	5.29	2.94	3.28	4.76	3.45	0.00	4.96	0.00	0.00	0.00	5.56	4.17	3.42	0.00	NA	6.25	7.35	4.00	6.76	3.45	4.60	4.76	0.16	0.909352	0.973322
K	intron_retention	C19orf43	chr19	-	chr19:12842236-12845149				chr19:12842235-12842236;chr19:12845149-12845150		76.19	100.00	72.00	100.00	83.33	100.00	60.00	70.00	53.85	NA	NA	NA	NA	NA	NA	100.00	NA	NA	82.14	87.50	100.00	100.00	76.92	NA	84.21	100.00	78.26	73.33	100.00	100.00	81.82	90.00	100.00	81.25	61.54	100.00	84.21	81.82	-2.39	0.785906	1.000000
K	intron_retention	ARPC1A	chr7	+	chr7:98951745-98955962				chr7:98951744-98951745;chr7:98955962-98955963		3.70	7.69	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	3.57	0.00	0.00	4.76	NA	0.00	3.12	0.00	0.00	0.00	0.00	9.09	0.00	0.00	7.69	2.63	0.00	0.00	0.00	0.796727	1.000000
N	alternative_acceptor	RP1-130H16.18,TBC1D10A	chr22	-	chr22:30689795-30689909	chr22:30689828-30689909		chr22:30689795-30689827	chr22:30689794-30689795		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	4.35	3.45	NA	0.00	6.25	6.67	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	RHOT2	chr16	+	chr16:722003-722083				chr16:722002-722003;chr16:722083-722084		0.00	0.00	5.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	3.70	0.00	0.00	5.41	11.43	0.00	0.00	6.78	4.17	2.70	6.25	4.35	0.00	0.00	4.00	10.87	7.89	4.35	5.00	4.00	7.27	1.35	5.12	3.77	0.520248	1.000000
K	intron_retention	CARS	chr11	-	chr11:3022479-3023191				chr11:3022478-3022479;chr11:3023191-3023192		10.00	0.00	12.00	8.33	6.06	10.71	NA	8.33	13.64	12.50	23.08	NA	16.67	10.00	13.33	NA	7.14	NA	4.35	10.00	5.00	NA	14.29	NA	3.23	0.00	3.57	NA	14.29	21.74	7.41	10.71	5.41	17.65	16.67	9.52	4.35	9.16	4.81	0.998027	1.000000
K	intron_retention	KMT2B	chr19	+	chr19:36227729-36227812				chr19:36227728-36227729;chr19:36227812-36227813		4.88	13.89	11.90	NA	17.39	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.14	6.25	0.00	6.45	0.00	0.00	0.00	8.16	7.69	10.53	0.00	8.11	11.86	18.75	0.00	4.55	2.04	0.00	2.44	2.44	0.753114	1.000000
N	jcn_only_AA	M6PR	chr12	-	chr12:9094537-9095011;chr12:9093298-9095011;chr12:9093500-9095011	chr12:9093466-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		0.89	0.00	1.22	15.09	11.24	12.82	0.16	0.00	0.00	0.35	1.19	1.72	0.00	0.33	1.40	2.59	1.27	1.54	1.85	0.55	1.44	1.71	3.01	1.45	0.00	0.82	1.41	0.48	1.32	1.42	1.55	0.51	0.00	2.30	0.83	1.81	0.00	0.69	0.69	0.367169	0.663989
N	jcn_only_AA	SVBP	chr1	-	chr1:43279576-43282101;chr1:43279572-43282101	chr1:43273172-43282101		chr1:43273172-43279571;chr1:43279572-43279575	chr1:43273171-43273172;chr1:43279571-43279572		100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	96.43	93.75	100.00	94.74	97.56	100.00	97.06	94.12	89.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	100.00	100.00	100.00	100.00	96.55	94.44	100.00	100.00	0.00	0.928608	0.977297
K	intron_retention	REEP4	chr8	-	chr8:21997043-21997475				chr8:21997042-21997043;chr8:21997475-21997476		0.00	5.93	3.57	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	4.65	NA	0.00	NA	0.00	NA	13.64	0.00	0.00	NA	0.00	NA	NA	7.14	4.44	0.00	7.69	0.00	4.54	0.00	-4.54	0.196696	1.000000
K	intron_retention		chr1	+	chr1:155288545-155288646				chr1:155288544-155288545;chr1:155288646-155288647		12.50	14.29	8.86	0.00	7.14	4.35	0.00	0.00	0.00	0.00	0.81	0.00	0.00	0.00	2.20	0.00	0.88	0.00	7.69	13.33	6.82	0.00	8.93	0.00	7.32	12.50	6.67	0.00	5.08	11.54	26.32	18.03	8.51	6.12	5.17	7.41	7.51	12.50	4.99	0.539100	1.000000
K	cassette	RTN3	chr11	+	chr11:63521181-63525627	chr11:63521181-63523583;chr11:63523643-63525627		chr11:63523584-63523642			97.52	100.00	98.55	100.00	100.00	100.00	98.94	97.32	94.57	98.51	98.43	98.11	97.92	97.22	96.97	98.21	98.53	99.30	96.30	98.28	97.44	99.01	97.16	98.39	100.00	98.55	96.45	95.38	98.50	98.57	95.52	96.77	95.24	97.56	95.58	96.46	98.43	97.42	-1.01	0.488346	0.774715
K	jcn_only_AA	ADCY7	chr16	+	chr16:50335126-50338270	chr16:50335126-50335578		chr16:50335579-50338270	chr16:50338270-50338271		0.00	0.00	NA	NA	0.00	NA	0.00	0.84	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	10.53	0.00	2.00	NA	NA	0.00	7.69	0.00	NA	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.216476	0.663989
K	intron_retention	SFPQ	chr1	-	chr1:35642073-35642919				chr1:35642072-35642073;chr1:35642919-35642920		11.76	0.00	17.24	2.20	3.90	3.03	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4.83	5.00	5.08	6.06	5.77	10.53	2.17	6.67	8.70	5.88	6.90	3.12	11.63	12.50	8.93	6.98	8.11	11.11	3.50	9.15	5.65	0.427481	1.000000
K	intron_retention	COPS7A	chr12	+	chr12:6839987-6840165				chr12:6839986-6839987;chr12:6840165-6840166		20.00	17.39	22.86	NA	5.88	NA	5.63	6.67	2.13	9.38	7.27	5.88	4.40	7.69	11.90	8.89	9.09	7.14	17.65	6.67	0.00	31.25	24.24	23.08	NA	14.29	14.81	14.29	28.00	12.50	21.43	25.93	14.29	21.74	18.18	16.13	14.29	10.99	-3.30	0.306341	1.000000
N	jcn_only_AD	BTBD2,TMEM259	chr19	-	chr19:1014473-1020770	chr19:1014473-1020393		chr19:1020394-1020770	chr19:1020770-1020771		3.49	0.00	4.26	0.00	3.33	NA	0.00	2.30	3.33	3.42	2.96	3.19	0.65	2.86	0.00	2.75	1.09	2.63	NA	0.00	0.00	0.00	0.00	5.00	0.00	1.43	0.00	0.00	0.00	2.86	4.35	1.69	0.00	3.85	2.20	5.41	0.00	2.58	2.58	0.014534	0.285693
N	jcn_only_AD	ARL6IP4	chr12	+	chr12:123465435-123465675;chr12:123463876-123465675;chr12:123465293-123465675;chr12:123465535-123465675	chr12:123465360-123465675		chr12:123463876-123465292;chr12:123465293-123465359;chr12:123465360-123465434;chr12:123465435-123465534	chr12:123463875-123463876;chr12:123465292-123465293;chr12:123465359-123465360;chr12:123465434-123465435		32.26	32.54	41.67	40.74	23.08	38.89	35.71	46.43	48.21	44.57	38.14	42.25	36.07	40.00	48.48	42.19	41.78	49.15	36.05	33.33	49.44	40.00	28.00	12.50	31.48	46.15	41.67	42.11	38.78	35.90	33.33	17.24	30.00	23.53	34.38	26.92	34.12	36.66	2.54	0.134099	0.657607
N	intron_retention	RP11-54O7.14	chr1	+	chr1:990596-990756				chr1:990595-990596;chr1:990756-990757		96.00	100.00	100.00	96.36	96.63	96.30	100.00	100.00	98.25	100.00	100.00	100.00	100.00	96.05	97.46	100.00	100.00	96.55	100.00	96.19	97.14	100.00	100.00	89.47	100.00	95.10	100.00	94.83	96.08	93.07	96.15	97.80	100.00	95.56	100.00	93.38	100.00	96.10	-3.90	0.009587	1.000000
K	intron_retention	HNRNPH3	chr10	+	chr10:70101609-70101734				chr10:70101608-70101609;chr10:70101734-70101735		7.79	0.00	6.36	4.85	1.65	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	1.25	2.97	6.86	4.38	3.70	2.40	5.00	3.53	4.65	6.06	2.70	2.55	1.43	14.04	11.54	8.19	3.26	6.85	6.06	1.49	5.76	4.27	0.628954	1.000000
K	intron_retention		chr2	-	chr2:27590069-27590323				chr2:27590068-27590069;chr2:27590323-27590324		10.34	15.79	20.41	22.22	19.44	0.00	0.00	0.00	3.12	3.23	2.38	0.00	8.70	0.00	6.67	6.90	11.11	NA	13.04	15.79	9.09	21.43	17.24	27.27	12.50	23.08	24.44	14.29	18.37	19.23	15.79	19.44	11.11	19.35	21.05	22.86	11.80	13.06	1.26	0.983711	1.000000
N	jcn_only_AA	EIF4A1	chr17	+	chr17:7480484-7480665;chr17:7480484-7480751	chr17:7480484-7480661		chr17:7480662-7480665;chr17:7480666-7480751	chr17:7480665-7480666;chr17:7480751-7480752		98.08	100.00	99.48	95.07	95.35	93.58	98.86	98.95	98.32	98.07	97.27	97.78	100.00	98.44	97.69	98.35	100.00	100.00	95.73	97.55	97.29	95.38	95.47	95.54	100.00	97.50	100.00	94.74	95.46	96.50	96.95	96.66	96.26	94.55	95.42	95.22	99.43	97.81	-1.62	0.535479	0.773701
K	intron_retention	LMBR1L	chr12	-	chr12:49495980-49496075				chr12:49495979-49495980;chr12:49496075-49496076		1.92	7.14	11.90	NA	16.67	NA	11.76	1.72	7.04	NA	NA	NA	0.00	8.47	8.11	0.00	0.00	NA	0.00	0.00	4.00	NA	14.29	NA	0.00	5.77	10.91	NA	8.33	0.00	2.38	4.62	0.00	7.69	9.52	9.52	0.00	2.15	2.15	0.913350	1.000000
K	intron_retention	RP5-956O18.3	chr1	-	chr1:230416683-230417235				chr1:230416682-230416683;chr1:230417235-230417236		100.00	100.00	96.90	100.00	100.00	100.00	93.33	96.97	95.76	100.00	100.00	100.00	97.83	92.86	98.80	94.44	100.00	100.00	100.00	89.89	100.00	95.24	92.31	97.50	100.00	100.00	96.69	94.87	100.00	98.67	89.83	92.95	100.00	97.78	100.00	95.96	100.00	94.91	-5.09	0.360018	1.000000
N	alternative_acceptor	PPP1CA	chr11	-	chr11:67168704-67169198;chr11:67168666-67169198	chr11:67168671-67169198		chr11:67168666-67168670;chr11:67168671-67168703	chr11:67168665-67168666;chr11:67168670-67168671		97.78	91.80	95.65	100.00	97.92	NA	98.76	97.89	97.89	98.44	98.58	99.07	99.44	99.08	98.96	100.00	99.12	100.00	96.43	96.55	97.83	100.00	98.40	97.50	100.00	98.36	96.47	100.00	98.75	100.00	96.30	97.40	100.00	97.96	98.59	98.33	99.10	97.84	-1.26	0.956423	0.990505
K	cassette	HPS1	chr10	-	chr10:100185478-100186971	chr10:100185478-100185574;chr10:100185743-100186971		chr10:100185575-100185742			95.12	89.19	96.00	90.91	95.45	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	81.25	92.11	100.00	88.89	94.90	91.84	100.00	100.00	100.00	100.00	97.14	100.00	90.62	94.83	88.89	92.06	94.74	96.00	94.59	96.43	1.83	0.479084	0.771126
N	alternative_donor	SCAF1	chr19	+	chr19:50161248-50161464;chr19:50161261-50161464	chr19:50161147-50161464		chr19:50161147-50161247;chr19:50161248-50161260	chr19:50161146-50161147;chr19:50161247-50161248		93.55	98.78	92.86	96.34	96.12	95.90	100.00	95.74	96.36	95.56	97.44	100.00	100.00	93.02	98.25	96.55	92.59	100.00	97.10	97.06	96.00	94.92	93.41	96.77	94.17	96.83	95.95	96.30	96.70	97.59	94.57	93.55	94.20	95.35	95.56	96.72	97.94	95.16	-2.78	0.119533	0.530980
N	cassette	DDIT3	chr12	-	chr12:57910964-57911488	chr12:57910964-57911051;chr12:57911208-57911488		chr12:57911052-57911207			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.41	100.00	91.55	100.00	100.00	100.00	100.00	100.00	0.00	0.458880	0.757194
K	alternative_acceptor	NSUN5	chr7	-	chr7:72717522-72717596	chr7:72717527-72717596		chr7:72717522-72717526	chr7:72717521-72717522		90.00	76.53	80.00	87.50	80.43	88.64	85.71	83.33	78.95	NA	83.33	NA	95.24	100.00	81.82	NA	92.31	NA	91.55	100.00	82.05	80.00	80.77	NA	81.32	91.67	83.33	NA	76.19	84.21	88.00	81.25	83.75	NA	83.33	100.00	84.73	90.84	6.11	0.127100	0.618145
K	alternative_donor	CLN3	chr16	-	chr16:28505014-28506661	chr16:28505014-28506446		chr16:28506447-28506661	chr16:28506661-28506662		100.00	100.00	88.89	NA	100.00	NA	94.44	96.88	100.00	100.00	100.00	100.00	100.00	94.29	NA	100.00	96.15	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.495714	0.749318
K	alternative_donor	PARP10	chr8	-	chr8:145057980-145058202	chr8:145057980-145058175		chr8:145058176-145058202	chr8:145058202-145058203		83.90	100.00	82.22	84.62	90.91	82.14	90.91	81.98	83.52	100.00	86.67	83.87	82.61	83.77	77.05	83.33	85.71	83.87	NA	80.49	81.36	NA	85.71	90.62	100.00	82.24	83.10	92.31	NA	91.04	79.52	78.07	NA	83.33	100.00	84.38	95.45	82.11	-13.34	0.070165	0.453728
K	jcn_only_AA	OS9	chr12	+	chr12:58089627-58112118;chr12:58089627-58110503	chr12:58089627-58089744					85.71	65.05	87.43	70.27	64.84	30.43	86.83	87.20	87.54	86.26	87.73	86.42	88.02	87.41	88.60	87.83	86.86	89.06	74.00	91.57	81.08	88.72	87.77	89.47	46.67	85.90	84.47	86.21	88.10	78.61	86.14	90.37	64.41	87.87	87.88	86.29	69.53	86.67	17.14	0.048797	0.663989
K	intron_retention		chr17	-	chr17:78186074-78187602				chr17:78186073-78186074;chr17:78187602-78187603		2.86	0.00	6.06	NA	0.00	NA	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	3.12	0.00	0.00	0.00	0.00	NA	0.00	NA	3.12	0.00	NA	0.00	4.35	0.00	0.00	0.00	0.00	0.831207	1.000000
N	alternative_donor	ZNF710	chr15	+	chr15:90617915-90622891;chr15:90619479-90622891	chr15:90617523-90622891		chr15:90617523-90617914;chr15:90617915-90619478	chr15:90617522-90617523;chr15:90617914-90617915		87.50	57.50	81.13	NA	38.46	NA	89.83	96.77	95.65	92.86	89.86	93.44	88.14	96.36	95.74	90.48	91.89	91.67	NA	90.00	NA	NA	72.41	88.46	22.73	93.33	80.00	91.67	66.67	NA	91.67	92.86	20.00	84.62	87.50	90.24	57.50	92.50	35.00	0.070741	0.453728
K	intron_retention	FES	chr15	+	chr15:91432867-91433069				chr15:91432866-91432867;chr15:91433069-91433070		7.14	3.06	16.00	NA	3.70	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	9.52	0.00	0.00	NA	4.35	NA	0.00	0.00	0.00	NA	0.00	NA	NA	3.85	3.45	0.00	4.55	6.06	1.53	0.00	-1.53	0.954402	1.000000
K	alternative_acceptor	ARHGAP27	chr17	-	chr17:43474391-43475314	chr17:43474595-43475314		chr17:43474391-43474594	chr17:43474390-43474391		14.00	6.90	8.11	NA	NA	NA	2.94	3.23	3.57	0.00	2.86	2.17	5.00	1.38	2.63	0.00	3.03	1.64	NA	7.81	NA	NA	5.88	10.34	13.33	8.51	14.29	20.00	13.33	15.38	7.69	6.67	NA	15.79	9.38	11.29	5.95	7.75	1.80	0.983803	0.994790
N	cassette	DENND5A	chr11	-	chr11:9161402-9163520;chr11:9161402-9163486	chr11:9161402-9161735;chr11:9161796-9163520,chr11:9161796-9163486		chr11:9161736-9161795			1.15	0.00	1.54	3.08	0.00	2.80	7.41	6.06	9.38	6.45	6.25	6.62	9.76	4.67	4.83	8.21	5.17	6.95	0.00	2.56	3.12	3.30	3.92	2.57	0.00	4.35	1.65	3.57	0.00	2.94	1.54	3.81	0.00	2.88	1.49	1.94	0.00	3.46	3.46	0.799971	0.936947
N	coord_cassette	CCM2	chr7	+	chr7:45078026-45109424	chr7:45078026-45104061;chr7:45104246-45108041;chr7:45108179-45109424		chr7:45104062-45104245;chr7:45108042-45108178			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	98.00	100.00	94.44	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AD	RPS15A	chr16	-	chr16:18800441-18801218;chr16:18800441-18801565	chr16:18800441-18801631		chr16:18801219-18801565;chr16:18801566-18801631	chr16:18801565-18801566;chr16:18801631-18801632		69.64	80.23	68.61	69.95	76.70	75.75	82.41	70.83	73.54	87.17	87.53	84.87	83.78	64.21	69.11	81.10	89.66	88.39	76.79	64.56	77.89	72.25	76.88	78.10	78.19	60.27	69.42	77.66	77.85	75.27	63.64	66.49	72.45	67.66	70.39	72.47	79.21	64.38	-14.83	0.000182	0.060704
K	cassette	ZPR1	chr11	-	chr11:116650554-116653634	chr11:116650554-116652873;chr11:116652961-116653634		chr11:116652874-116652960			100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	PLRG1	chr4	-	chr4:155457893-155458437	chr4:155457897-155458437		chr4:155457893-155457896	chr4:155457892-155457893		100.00	100.00	100.00	100.00	100.00	98.15	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	95.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	95.65	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	CLASRP	chr19	+	chr19:45567889-45570594				chr19:45567888-45567889;chr19:45570594-45570595		6.82	4.39	9.43	7.69	6.12	3.45	NA	NA	NA	0.00	NA	NA	8.33	0.00	5.00	0.00	0.00	NA	11.54	3.12	4.69	16.67	4.08	18.75	9.62	3.70	5.13	10.53	3.70	4.17	5.17	7.32	6.59	4.76	3.70	7.89	8.33	3.70	-4.63	0.179697	1.000000
K	jcn_only_AD	GTF2F1,NOSIP	chr19	-	chr19:50060251-50060346	chr19:50060251-50060337		chr19:50060338-50060346	chr19:50060346-50060347		16.22	7.56	11.54	8.33	6.48	10.28	0.00	10.84	10.17	7.14	9.09	12.50	9.52	5.88	8.96	7.69	16.67	10.00	8.92	14.77	11.19	9.09	9.68	0.00	7.32	8.33	8.70	13.64	6.00	8.33	17.05	9.57	14.37	19.05	13.95	11.32	8.24	12.80	4.56	0.141897	0.657607
K	intron_retention		chr1	+	chr1:145508076-145508206				chr1:145508075-145508076;chr1:145508206-145508207		3.70	0.00	4.00	0.91	2.54	1.60	0.00	0.00	0.00	0.00	0.00	0.83	0.00	1.03	0.00	0.00	0.00	0.00	0.00	3.45	3.10	2.99	2.90	3.68	0.00	4.55	2.42	2.05	1.82	1.73	5.82	6.00	4.94	1.92	3.55	2.27	0.00	3.58	3.58	0.181931	1.000000
K	intron_retention	CNTRL	chr9	+	chr9:123936016-123937295				chr9:123936015-123936016;chr9:123937295-123937296		5.00	23.81	20.69	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	11.76	8.33	NA	NA	13.33	NA	NA	0.00	3.45	NA	NA	NA	NA	18.75	NA	NA	NA	NA	5.88	2.50	-3.38	0.915073	1.000000
K	intron_retention	CAPN1	chr11	+	chr11:64955512-64955884				chr11:64955511-64955512;chr11:64955884-64955885		0.00	2.63	1.05	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	0.86	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	1.31	0.00	-1.31	0.450163	1.000000
K	intron_retention	NABP1	chr2	+	chr2:192549023-192550324				chr2:192549022-192549023;chr2:192550324-192550325		7.96	10.00	8.05	5.26	6.67	4.82	1.33	3.30	1.66	2.27	2.27	3.01	4.26	2.76	4.07	1.92	0.00	3.24	0.00	8.21	2.17	7.50	2.74	10.93	NA	7.50	5.59	4.28	1.45	3.36	6.82	5.14	0.00	12.24	5.77	12.24	1.33	7.16	5.83	0.479154	1.000000
N	jcn_only_AA	TRADD	chr16	-	chr16:67189696-67190412;chr16:67190103-67190412	chr16:67189558-67190412		chr16:67189558-67189695;chr16:67189696-67190102	chr16:67189557-67189558;chr16:67189695-67189696		94.12	100.00	100.00	100.00	100.00	100.00	100.00	96.92	98.72	100.00	100.00	95.45	100.00	100.00	98.96	100.00	NA	93.33	NA	96.15	100.00	100.00	90.00	81.08	100.00	98.25	100.00	100.00	100.00	94.52	91.67	100.00	NA	100.00	NA	92.54	100.00	96.53	-3.47	0.025385	0.621886
N	alternative_donor	TNS1	chr2	-	chr2:218669327-218672797	chr2:218669327-218671927		chr2:218671928-218672797	chr2:218672797-218672798		0.00	4.76	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	1.25	0.00	0.00	0.00	0.69	0.00	NA	0.00	NA	0.00	2.00	2.08	7.69	2.70	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	4.00	1.45	3.00	0.00	-3.00	0.197155	0.570816
K	jcn_only_AD	AP2A2	chr11	+	chr11:994246-1000431	chr11:996226-1000431		chr11:994246-996225	chr11:994245-994246		0.00	0.00	0.00	NA	3.03	NA	0.00	0.00	0.00	NA	0.00	NA	1.11	0.00	0.00	NA	0.00	NA	5.88	0.00	NA	0.00	3.17	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.279232	0.657607
K	intron_retention	NDUFA10	chr2	-	chr2:240951114-240954155				chr2:240951113-240951114;chr2:240954155-240954156		12.50	7.02	10.53	5.41	2.86	0.00	3.19	0.00	2.86	4.00	4.00	4.44	0.00	0.00	7.89	1.39	6.00	3.45	6.98	6.67	4.26	12.50	7.23	9.80	5.88	11.76	10.34	7.89	4.44	6.12	0.00	7.50	3.85	9.09	6.33	6.10	4.87	3.33	-1.53	0.954151	1.000000
K	coord_cassette	RPS3A	chr4	+	chr4:152020867-152024022	chr4:152020867-152021636;chr4:152021741-152022126;chr4:152022238-152024022		chr4:152021637-152021740;chr4:152022127-152022237			98.21	97.70	95.45	98.55	98.80	98.58	99.27	98.36	94.87	99.51	99.62	99.45	99.11	94.64	95.48	99.20	99.32	99.66	98.30	97.87	96.97	99.36	98.84	99.07	98.97	94.12	95.90	98.95	99.03	99.13	95.69	93.94	97.74	99.24	98.97	98.86	98.63	96.78	-1.85	0.046985	0.643829
K	cassette		chr16	.	chr16:2304065-2312278	chr16:2304065-2305585;chr16:2305728-2312278		chr16:2305586-2305727			100.00	95.00	100.00	92.59	100.00	100.00	97.37	100.00	100.00	96.25	98.28	100.00	100.00	100.00	100.00	97.09	97.33	97.44	91.67	96.15	92.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.69	100.00	1.31	0.231459	0.709176
K	intron_retention	HLA-C	chr6	-	chr6:31239126-31239375				chr6:31239125-31239126;chr6:31239375-31239376		3.98	1.53	2.59	2.42	0.85	4.55	0.26	0.33	0.15	0.68	0.46	0.74	0.55	0.42	0.47	0.82	0.27	1.24	0.86	1.12	0.82	2.27	1.21	2.95	NA	NA	NA	NA	NA	15.62	2.71	2.56	1.63	3.39	1.60	4.57	0.86	1.12	0.26	0.575733	1.000000
K	alternative_acceptor	CYB561D2,XXcos-LUCA11.5	chr3	+	chr3:50388416-50388839	chr3:50388416-50388773		chr3:50388774-50388839	chr3:50388839-50388840		15.00	31.25	22.22	NA	30.00	NA	23.19	34.15	28.57	29.03	19.40	20.00	25.64	30.23	28.85	23.53	23.21	17.65	NA	19.05	23.53	NA	22.22	30.00	NA	25.93	35.71	28.57	28.00	36.36	18.75	13.79	30.00	33.33	22.22	25.00	27.82	22.49	-5.33	0.336645	0.709013
K	cassette	SLC25A11	chr17	-	chr17:4842271-4843110	chr17:4842271-4842354;chr17:4842508-4843110		chr17:4842355-4842507			93.33	87.10	98.21	NA	78.26	NA	100.00	100.00	100.00	95.56	97.67	94.74	100.00	100.00	100.00	96.00	97.47	100.00	100.00	86.96	94.29	78.57	87.50	100.00	NA	100.00	92.68	100.00	91.43	92.86	90.00	94.87	81.82	95.24	90.62	93.94	100.00	96.66	-3.34	0.789743	0.936947
N	intron_retention		chr4	-	chr4:89442534-89443070				chr4:89442533-89442534;chr4:89443070-89443071		100.00	95.56	100.00	100.00	95.92	100.00	100.00	100.00	100.00	96.30	98.53	100.00	100.00	100.00	100.00	98.82	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	93.94	95.83	95.83	100.00	98.22	100.00	1.78	0.354832	1.000000
K	intron_retention	MCOLN1	chr19	+	chr19:7592515-7592749				chr19:7592514-7592515;chr19:7592749-7592750		15.22	26.67	21.88	NA	25.00	NA	2.94	0.00	0.00	1.92	2.68	0.00	4.44	5.71	0.00	3.37	2.33	0.00	23.08	23.08	5.88	0.00	20.45	4.55	10.53	10.81	20.69	0.00	20.51	0.00	17.65	23.08	33.33	12.50	17.07	7.14	16.80	13.02	-3.79	0.834993	1.000000
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648780-75648946;chr15:75648815-75648946	chr15:75648791-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		57.14	72.73	61.90	76.00	72.41	59.57	78.95	NA	NA	63.64	84.21	81.82	78.95	NA	90.00	NA	85.00	NA	60.87	60.00	77.42	80.00	70.45	80.00	72.55	72.73	73.68	64.71	65.52	76.47	66.67	64.29	66.67	70.83	58.06	62.86	72.64	63.34	-9.30	0.137308	0.635210
K	jcn_only_AA	LILRA6,LILRB3	chr19	-	chr19:54721344-54722229	chr19:54721347-54722229		chr19:54721344-54721346	chr19:54721343-54721344		20.73	0.00	15.04	15.84	18.37	18.91	15.91	19.68	26.72	25.16	23.53	29.84	18.42	21.66	11.29	21.69	34.48	26.67	16.22	23.26	20.78	21.43	18.18	19.05	24.00	28.52	27.03	23.62	21.51	24.49	31.03	30.00	25.00	26.67	34.09	26.94	17.32	22.46	5.14	0.107074	0.663989
K	intron_retention	NDUFS3	chr11	+	chr11:47602175-47602386				chr11:47602174-47602175;chr11:47602386-47602387		14.81	8.08	14.00	9.52	5.45	6.25	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	4.44	0.00	1.52	0.00	7.04	11.54	7.78	10.00	6.41	13.33	2.82	10.34	4.65	4.76	3.12	4.35	18.42	11.67	9.09	14.29	5.45	14.29	4.93	10.94	6.01	0.525874	1.000000
K	intron_retention		chr17	+	chr17:29280369-29281495				chr17:29280368-29280369;chr17:29281495-29281496		8.93	0.00	22.22	NA	12.50	NA	5.42	3.04	0.00	0.00	12.09	0.00	7.61	2.79	0.00	1.79	3.56	0.00	0.00	3.23	0.00	NA	8.96	0.00	13.64	4.55	7.69	8.70	10.84	NA	0.00	4.76	0.00	0.00	2.22	0.00	2.71	3.13	0.42	0.575270	1.000000
N	jcn_only_AD	NUDT5	chr10	-	chr10:12221132-12222393;chr10:12221132-12223654	chr10:12221132-12226887					100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.855671	0.929940
N	alternative_acceptor	SNX5	chr20	-	chr20:17929614-17929707	chr20:17929621-17929707		chr20:17929614-17929620	chr20:17929613-17929614		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr17	-	chr17:66417962-66422215				chr17:66417961-66417962;chr17:66422215-66422216		11.29	8.51	9.76	0.00	9.52	0.00	7.35	5.56	7.58	3.03	6.67	9.09	9.43	3.41	6.25	8.00	2.13	5.26	6.52	8.33	5.13	8.70	7.14	9.09	16.67	8.93	10.00	4.55	7.50	16.13	9.20	10.00	7.27	14.67	16.67	16.67	7.93	8.63	0.70	0.895608	1.000000
K	intron_retention	DHX34	chr19	+	chr19:47884582-47885236				chr19:47884581-47884582;chr19:47885236-47885237		7.89	14.46	15.56	10.00	13.10	10.87	0.00	NA	0.00	0.00	5.26	NA	0.00	0.00	10.00	0.00	0.00	NA	7.14	7.14	10.45	6.90	8.93	6.25	10.47	10.00	12.50	0.00	5.13	NA	9.21	12.07	5.56	19.05	14.71	17.39	6.35	7.89	1.54	0.728385	1.000000
N	jcn_only_AA	COX7C	chr5	+	chr5:159478191-159492283	chr5:159478191-159491938		chr5:159491939-159492283	chr5:159492283-159492284		100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	HNRNPAB	chr5	+	chr5:177634227-177636330				chr5:177634226-177634227;chr5:177636330-177636331		6.00	2.63	3.85	1.11	0.85	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.23	0.00	4.35	0.00	0.00	0.38	1.11	1.15	22.22	4.88	4.00	0.00	1.23	2.04	5.56	7.02	6.98	1.14	1.24	2.52	3.49	2.44	-1.05	0.431598	1.000000
K	intron_retention	GPN2	chr1	-	chr1:27206241-27210650				chr1:27206240-27206241;chr1:27210650-27210651		16.67	7.69	8.33	0.00	0.00	1.41	0.00	0.00	0.00	4.76	4.17	0.00	0.00	0.00	2.78	3.12	5.26	0.00	4.76	0.00	3.45	0.00	8.33	0.00	0.00	5.26	8.70	0.00	0.00	0.00	11.76	15.00	0.00	18.75	8.00	11.54	0.00	2.63	2.63	0.464562	1.000000
K	alternative_acceptor	SNAP23	chr15	+	chr15:42822018-42823610;chr15:42822018-42837333	chr15:42822018-42837406		chr15:42823611-42837333;chr15:42837334-42837406	chr15:42837333-42837334;chr15:42837406-42837407		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.14	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	LASP1	chr17	+	chr17:37076236-37076559				chr17:37076235-37076236;chr17:37076559-37076560		98.21	100.00	96.88	NA	100.00	NA	98.46	100.00	96.46	100.00	96.01	96.00	95.02	100.00	100.00	98.21	95.82	100.00	100.00	100.00	100.00	94.92	97.07	93.10	100.00	95.74	96.61	100.00	97.81	100.00	96.15	100.00	100.00	98.10	96.95	96.55	100.00	99.10	-0.90	0.966723	1.000000
K	intron_retention		chr17	+	chr17:42429940-42430083				chr17:42429939-42429940;chr17:42430083-42430084		100.00	77.95	100.00	78.15	78.70	77.47	100.00	78.73	100.00	80.66	77.19	81.59	100.00	100.00	76.95	82.08	78.25	100.00	77.38	79.06	79.39	78.97	78.54	79.23	79.19	100.00	78.38	80.48	78.74	78.92	80.23	78.52	78.73	77.50	82.80	78.82	78.96	90.12	11.16	0.519754	1.000000
N	cassette	NCKAP1L	chr12	+	chr12:54905890-54910679	chr12:54905890-54910022;chr12:54910080-54910679		chr12:54910023-54910079			93.42	100.00	94.78	NA	NA	NA	100.00	98.73	96.97	100.00	100.00	100.00	100.00	98.54	98.28	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.56	100.00	96.92	94.87	100.00	98.00	100.00	93.75	95.74	NA	96.08	97.59	95.71	100.00	97.73	-2.27	0.039273	0.500342
K	intron_retention		chr1	-	chr1:153920806-153920933				chr1:153920805-153920806;chr1:153920933-153920934		1.85	5.03	2.32	3.08	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.90	0.00	2.04	2.13	1.04	0.00	0.00	1.89	1.73	0.00	0.00	3.70	2.45	2.89	1.82	1.10	2.06	1.90	0.91	0.93	0.02	0.968540	1.000000
N	jcn_only_AD	IRF3,PEPD	chr19	-	chr19:50164086-50165401;chr19:50164086-50165204;chr19:50164086-50165441	chr19:50164086-50164706		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		13.64	15.91	21.88	7.14	5.56	11.11	0.00	5.88	7.32	NA	0.00	NA	0.00	0.00	2.44	NA	4.76	NA	8.25	0.00	12.16	NA	5.00	NA	18.90	0.00	8.51	NA	4.35	20.00	20.00	19.57	12.33	NA	21.05	NA	10.29	2.94	-7.35	0.590607	0.796721
K	intron_retention	HNRNPH1	chr5	-	chr5:179043960-179044051				chr5:179043959-179043960;chr5:179044051-179044052		8.77	6.00	14.50	2.27	3.03	0.00	1.30	0.00	2.78	0.52	2.19	0.00	0.92	0.00	0.00	0.00	0.00	1.06	0.00	3.64	4.41	2.26	5.77	5.22	0.00	1.89	4.58	1.91	3.43	1.15	11.86	10.64	2.78	7.82	9.93	10.26	1.11	2.77	1.66	0.902642	1.000000
N	jcn_only_AD	ANKRD13D	chr11	+	chr11:67067595-67068460;chr11:67068367-67068460	chr11:67067971-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		3.19	6.45	2.99	18.75	5.83	NA	0.00	0.00	0.00	NA	6.25	NA	0.00	0.00	0.00	NA	0.00	NA	5.60	3.28	5.56	0.00	3.41	12.50	0.00	7.14	2.94	10.00	5.08	NA	7.89	4.76	4.23	6.25	2.70	11.43	2.12	3.23	1.12	0.650125	0.818945
K	jcn_only_AA	UFSP2	chr4	-	chr4:186327011-186329089	chr4:186327114-186329089		chr4:186327011-186327113	chr4:186327010-186327011		0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.14	3.33	NA	0.00	NA	0.00	0.00	0.00	7.69	3.12	7.14	NA	0.00	0.00	0.00	8.00	NA	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr17	-	chr17:79994325-79994419				chr17:79994324-79994325;chr17:79994419-79994420		3.85	12.31	12.20	7.50	4.35	5.00	0.00	0.00	0.00	3.03	0.00	0.00	1.11	0.00	0.00	0.00	1.47	0.00	4.64	5.00	4.17	6.67	4.11	3.85	2.17	7.69	12.90	0.00	5.56	6.67	12.82	16.33	10.22	3.03	5.77	3.57	3.40	4.42	1.02	0.976998	1.000000
K	intron_retention	CIRBP	chr19	+	chr19:1270882-1270926				chr19:1270881-1270882;chr19:1270926-1270927		2.62	1.10	4.74	4.00	4.72	3.33	1.26	2.00	1.14	1.34	2.50	0.00	0.54	2.44	2.61	1.55	3.83	1.19	1.41	3.51	3.00	3.25	4.29	4.17	6.11	3.02	2.84	1.42	5.49	4.39	7.45	4.66	1.94	4.42	6.47	2.89	1.33	2.82	1.49	0.612970	1.000000
N	jcn_only_AD	IL4I1	chr19	-	chr19:50398438-50399140;chr19:50398438-50399182	chr19:50398438-50399071		chr19:50399072-50399140;chr19:50399141-50399182	chr19:50399140-50399141;chr19:50399182-50399183		95.15	92.31	96.02	93.75	97.14	98.46	96.36	95.86	97.23	95.76	96.94	97.41	100.00	96.10	96.60	94.83	97.28	96.16	100.00	97.19	97.71	97.56	96.44	94.84	100.00	96.86	95.91	100.00	94.59	97.35	96.54	97.03	100.00	97.09	95.02	94.86	100.00	96.32	-3.68	0.224730	0.657607
N	jcn_only_AD	OS9	chr12	+	chr12:58112205-58112775;chr12:58112166-58112775	chr12:58112160-58112775		chr12:58112160-58112165;chr12:58112166-58112204	chr12:58112159-58112160;chr12:58112165-58112166		19.02	14.97	15.29	16.76	17.34	14.36	10.13	10.87	8.97	8.69	9.32	10.54	17.68	17.55	15.58	21.65	16.51	17.22	13.91	13.29	20.73	15.06	11.33	11.01	11.37	9.66	10.25	10.94	9.53	10.15	14.00	13.20	14.32	10.31	12.47	12.42	14.12	13.64	-0.47	0.860435	0.930693
N	alternative_acceptor	C6orf136	chr6	+	chr6:72006521-72029940	chr6:72006521-72011088		chr6:72011089-72029940	chr6:72029940-72029941		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.29	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	0.00	0.210074	0.671156
K	intron_retention		chr15	-	chr15:89860059-89860606				chr15:89860058-89860059;chr15:89860606-89860607		5.88	3.30	4.17	2.04	3.57	4.17	6.98	5.88	0.00	6.06	8.82	10.00	27.08	0.00	0.00	4.26	21.05	6.25	3.85	4.35	3.33	1.59	0.00	1.85	16.67	6.06	3.12	2.78	3.45	4.08	0.00	1.32	6.02	2.67	5.45	2.41	6.50	5.12	-1.38	0.442295	1.000000
K	intron_retention	SLC26A6	chr3	-	chr3:48665472-48665866				chr3:48665471-48665472;chr3:48665866-48665867		22.81	13.51	25.33	NA	7.69	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.25	9.52	NA	0.00	NA	5.26	26.92	14.29	NA	20.00	NA	0.00	23.08	24.32	NA	13.04	10.00	18.52	28.12	0.00	14.29	25.00	22.22	0.00	22.81	22.81	0.047351	1.000000
K	intron_retention		chr19	+	chr19:50387627-50387715				chr19:50387626-50387627;chr19:50387715-50387716		51.85	10.11	54.41	5.00	5.88	0.00	5.56	81.48	31.03	14.29	20.83	NA	0.00	80.00	61.11	22.22	12.50	30.00	7.55	53.19	30.77	37.50	36.73	62.86	3.77	69.84	33.33	42.86	8.82	52.38	22.86	16.39	7.55	25.00	51.28	54.35	6.55	61.52	54.96	0.003553	1.000000
N	coord_cassette	EIF3M	chr11	+	chr11:32605476-32611092	chr11:32605476-32610139;chr11:32610279-32610557;chr11:32610682-32611092		chr11:32610140-32610278;chr11:32610558-32610681			82.61	87.04	78.43	75.68	85.42	75.00	83.61	78.57	79.55	83.84	84.62	70.37	78.26	72.22	79.66	76.34	81.93	86.27	94.12	88.89	90.62	83.82	88.73	80.33	86.36	77.78	82.05	80.43	84.38	76.36	76.92	80.65	89.29	80.85	88.33	85.00	86.70	78.17	-8.53	0.054002	0.643829
K	coord_cassette	TRPV2	chr17	+	chr17:16332297-16338203	chr17:16332297-16335279;chr17:16335615-16336887;chr17:16337013-16338203		chr17:16335280-16335614;chr17:16336888-16337012			84.85	94.12	90.91	100.00	95.00	90.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.57	90.32	97.59	100.00	100.00	100.00	100.00	95.12	85.00	96.15	89.47	97.44	94.59	100.00	91.07	95.83	89.66	95.12	97.06	94.86	-2.20	0.564009	0.750458
K	intron_retention	TSSC4	chr11	+	chr11:2424380-2424746				chr11:2424379-2424380;chr11:2424746-2424747		91.67	100.00	100.00	98.08	97.30	94.93	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	97.18	100.00	100.00	100.00	100.00	100.00	90.32	100.00	100.00	100.00	100.00	100.00	93.94	100.00	94.68	100.00	100.00	100.00	98.59	100.00	1.41	0.912164	1.000000
N	jcn_only_AD	NISCH	chr3	+	chr3:52514312-52518528;chr3:52514320-52518528;chr3:52515126-52518528	chr3:52515054-52518528					0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	1.28	0.00	9.09	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	NA	2.94	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	alternative_first_exon		chr11	-	chr11:65373553-65374740	chr11:65373553-65374161	chr11:65374741-65374984	chr11:65374162-65374497			100.00	100.00	98.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	91.30	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.544826
N	alternative_first_exon	C19orf24	chr19	+	chr19:1275830-1277181;chr19:1276103-1277181	chr19:1272051-1277181,chr19:1274440-1277181	chr19:1275437-1275829;chr19:1276020-1276102	chr19:1271980-1272050			13.33	0.00	21.74	14.29	13.51	16.67	0.00	0.00	4.76	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	10.17	9.09	13.21	9.09	11.43	NA	0.00	36.36	33.33	0.00	16.00	NA	29.41	42.31	13.75	6.25	12.00	0.00	0.00	13.33	13.33	0.112633	0.284861
K	intron_retention		chr22	-	chr22:50967040-50967564				chr22:50967039-50967040;chr22:50967564-50967565		11.26	8.19	25.76	11.21	9.58	3.73	0.91	1.49	1.42	1.88	1.18	0.85	1.09	2.52	4.12	3.66	1.33	1.26	4.07	12.35	4.11	27.68	21.79	25.05	13.30	8.88	14.15	10.52	11.66	8.52	9.70	16.52	4.95	23.79	18.36	21.64	4.51	9.29	4.78	0.652358	1.000000
K	jcn_only_AD	TOM1	chr22	+	chr22:35742963-35743047	chr22:35742966-35743047		chr22:35742963-35742965	chr22:35742962-35742963		15.66	23.00	16.38	16.67	17.76	16.85	18.75	15.79	19.72	18.66	22.13	17.33	17.54	16.84	18.98	19.42	18.46	21.79	14.63	14.64	16.47	17.88	14.85	17.11	3.03	20.45	16.42	15.25	18.64	17.33	13.58	16.30	10.77	12.87	16.90	16.89	16.09	15.72	-0.36	0.627646	0.817290
K	intron_retention	ZFP36L1	chr14	-	chr14:69255527-69256243				chr14:69255526-69255527;chr14:69256243-69256244		96.62	100.00	97.70	NA	94.00	NA	97.36	95.84	97.21	95.87	96.74	95.45	95.87	98.45	100.00	98.59	97.12	94.12	86.67	92.69	100.00	94.44	94.51	100.00	100.00	98.28	96.77	90.00	96.18	83.33	96.23	95.31	92.86	94.29	95.76	98.25	96.62	96.43	-0.19	0.344229	1.000000
N	jcn_only_AA		chr22	+	chr22:44587985-44588976;chr22:44587985-44588837;chr22:44587985-44589685	chr22:44587985-44589680		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		96.88	96.94	97.92	96.88	96.17	95.56	100.00	100.00	100.00	100.00	100.00	100.00	99.39	100.00	100.00	98.28	100.00	100.00	92.09	97.14	100.00	100.00	97.53	100.00	95.24	93.94	97.47	95.74	96.15	100.00	96.30	98.39	92.12	98.36	97.62	98.97	96.09	97.01	0.92	0.426838	0.695680
K	intron_retention		chr14	+	chr14:24706769-24707451				chr14:24706768-24706769;chr14:24707451-24707452		11.11	5.56	17.07	NA	7.69	60.00	1.30	8.93	3.51	6.67	6.25	11.11	2.17	3.77	2.22	8.70	5.71	12.50	12.50	16.67	11.43	NA	13.51	23.08	0.00	16.67	13.11	15.00	6.82	21.05	14.29	13.64	24.00	12.00	10.53	18.52	3.86	12.70	8.83	0.602902	1.000000
K	intron_retention	PLA2G4C	chr19	-	chr19:48571144-48578023				chr19:48571143-48571144;chr19:48578023-48578024		3.85	NA	6.45	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	5.26	0.00	NA	NA	NA	0.00	4.88	0.00	0.00	5.00	0.00	11.11	3.06	3.33	0.00	0.00	0.00	2.08	3.39	0.00	5.41	4.55	2.78	0.00	3.46	3.46	0.973205	1.000000
K	cassette	EXOSC9	chr4	+	chr4:122735203-122737523	chr4:122735203-122737298;chr4:122737350-122737523		chr4:122737299-122737349			16.67	2.86	15.38	9.52	12.50	23.08	13.64	39.64	42.86	30.00	17.24	37.78	10.34	18.06	22.22	13.04	6.06	22.92	10.87	16.96	12.20	20.00	8.57	20.00	0.00	16.28	6.67	8.00	6.45	14.49	20.00	11.11	11.43	4.55	8.11	12.50	10.61	17.51	6.90	0.016107	0.372211
K	intron_retention	FMNL1	chr17	+	chr17:43323101-43323244				chr17:43323100-43323101;chr17:43323244-43323245		3.63	0.44	3.22	0.00	1.33	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.51	0.83	0.00	0.33	0.00	1.37	1.36	3.07	2.44	2.46	4.26	5.43	2.67	2.69	1.87	1.13	1.59	2.51	2.83	2.17	2.67	1.38	2.33	0.91	1.94	1.03	0.580919	1.000000
N	alternative_acceptor		chr11	+	chr11:74914473-74914912;chr11:74914473-74925508;chr11:74914473-74921929;chr11:74914473-74914893;chr11:74914473-74925486	chr11:74914473-74915444		chr11:74914894-74914912;chr11:74914913-74915444;chr11:74915445-74921929;chr11:74921930-74925486;chr11:74925487-74925508	chr11:74914912-74914913;chr11:74915444-74915445;chr11:74921929-74921930;chr11:74925486-74925487;chr11:74925508-74925509		96.49	64.42	92.31	NA	80.33	42.86	99.26	100.00	NA	100.00	95.35	100.00	97.81	94.59	NA	100.00	99.10	92.86	68.18	86.96	81.25	84.62	85.19	63.64	48.84	87.50	87.23	85.19	92.52	72.73	NA	100.00	58.49	77.78	91.11	100.00	66.30	94.59	28.29	0.064553	0.584083
N	alternative_acceptor		chr17	+	chr17:40717066-40717250;chr17:40717066-40717247	chr17:40717066-40717244		chr17:40717245-40717247;chr17:40717248-40717250	chr17:40717247-40717248;chr17:40717250-40717251		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr16	+	chr16:89965281-89967042				chr16:89965280-89965281;chr16:89967042-89967043		0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	2.78	2.17	1.64	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	1.37	1.27	1.03	0.00	0.00	0.00	0.601024	1.000000
N	jcn_only_AA		chr1	+	chr1:79121197-79123641;chr1:79121197-79124555	chr1:79121197-79124996		chr1:79123642-79124555;chr1:79124556-79124996	chr1:79124555-79124556;chr1:79124996-79124997		96.18	100.00	100.00	100.00	100.00	96.67	100.00	97.06	98.82	100.00	100.00	92.67	95.12	97.20	96.77	97.52	100.00	96.00	NA	93.73	94.92	100.00	100.00	92.94	NA	94.28	100.00	97.35	100.00	95.14	97.16	96.88	100.00	96.39	100.00	95.77	100.00	96.62	-3.38	0.097715	0.663989
N	jcn_only_AA	GPR137B	chr1	+	chr1:236368551-236370432;chr1:236368551-236371360;chr1:236368551-236376613	chr1:236368551-236371349		chr1:236370433-236371349;chr1:236371350-236371360;chr1:236371361-236376613	chr1:236371349-236371350;chr1:236371360-236371361;chr1:236376613-236376614		90.22	100.00	94.38	97.40	97.87	100.00	90.37	91.75	89.40	94.52	98.84	96.09	91.53	90.57	92.83	94.24	93.84	95.22	88.89	90.78	97.37	93.89	95.04	96.53	100.00	74.42	83.82	97.27	91.45	95.57	87.88	88.79	100.00	93.51	92.31	93.95	95.77	90.39	-5.37	0.056593	0.663989
N	jcn_only_AA	SCYL1	chr11	+	chr11:65303806-65304154;chr11:65303806-65304188;chr11:65303806-65304061	chr11:65303806-65304056		chr11:65304057-65304061;chr11:65304062-65304154;chr11:65304155-65304188	chr11:65304061-65304062;chr11:65304154-65304155;chr11:65304188-65304189		97.22	100.00	100.00	96.55	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	97.37	100.00	100.00	95.12	100.00	100.00	100.00	95.83	100.00	100.00	95.00	96.97	97.96	100.00	100.00	100.00	100.00	100.00	98.69	-1.31	0.304649	0.663989
N	alternative_acceptor	PCBP2	chr12	+	chr12:53861628-53862563;chr12:53861628-53861966	chr12:53861628-53862560		chr12:53861967-53862560;chr12:53862561-53862563	chr12:53862560-53862561;chr12:53862563-53862564		65.00	62.77	58.73	64.29	71.32	82.50	64.71	66.67	61.60	67.36	68.40	66.10	62.18	61.80	62.94	64.45	67.00	64.38	71.01	61.19	55.95	60.00	63.78	65.19	50.00	62.30	61.29	67.00	63.46	67.71	64.91	63.06	69.51	67.68	61.27	65.45	63.74	63.60	-0.13	0.932247	0.980313
N	jcn_only_AA	TMEM18	chr2	-	chr2:676239-677288;chr2:675631-677288	chr2:675628-677288					0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	1.56	0.00	4.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	cassette	SNX8	chr7	-	chr7:2297439-2303932	chr7:2297439-2302864;chr7:2302998-2303932		chr7:2302865-2302997			100.00	100.00	94.12	98.04	98.98	100.00	100.00	100.00	100.00	100.00	99.07	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	RAB34	chr17	-	chr17:27042141-27042212				chr17:27042140-27042141;chr17:27042212-27042213		4.12	0.98	2.99	0.00	5.21	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.47	0.00	0.00	NA	4.65	2.38	3.98	0.00	3.70	0.00	7.14	1.85	3.96	0.00	3.70	0.00	6.12	5.08	7.14	9.52	5.00	5.88	2.82	2.12	-0.70	0.970974	1.000000
N	jcn_only_AD	GBP2	chr1	-	chr1:89575950-89578154;chr1:89575950-89578175	chr1:89575950-89578142		chr1:89578143-89578154;chr1:89578155-89578175	chr1:89578154-89578155;chr1:89578175-89578176		0.85	0.00	1.06	1.82	1.47	1.34	2.63	2.96	2.43	4.21	3.28	3.87	3.08	3.08	3.94	3.86	4.17	3.41	5.88	2.81	2.82	1.55	3.61	1.93	0.00	2.60	1.79	2.36	0.00	2.28	1.80	1.19	0.00	2.96	0.00	2.07	1.31	2.71	1.39	0.700282	0.845069
N	cassette	LSP1	chr11	+	chr11:1901455-1904648;chr11:1874428-1904648	chr11:1901455-1902661,chr11:1874428-1902661;chr11:1902827-1904648		chr11:1902662-1902826			95.92	88.64	100.00	90.62	89.44	100.00	98.25	97.30	98.11	97.25	96.85	96.13	99.27	100.00	98.35	98.20	97.64	98.41	88.89	91.49	95.53	87.70	88.56	88.19	90.76	93.44	95.83	94.98	90.95	96.17	95.15	90.82	88.74	89.49	91.94	89.66	89.83	95.53	5.71	0.222564	0.709176
N	alternative_acceptor	AC009948.5,ASNSD1	chr2	+	chr2:190532672-190535166	chr2:190532672-190535141		chr2:190535142-190535166	chr2:190535166-190535167		5.00	0.00	0.00	0.00	1.37	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	1.35	1.35	0.208863	0.670323
N	jcn_only_AA	UBAC2	chr13	+	chr13:100020161-100021616;chr13:100020161-100029171	chr13:100020161-100037481		chr13:100021617-100029171;chr13:100029172-100037481	chr13:100029171-100029172;chr13:100037481-100037482		100.00	100.00	100.00	NA	95.45	NA	100.00	100.00	100.00	68.97	100.00	66.04	97.83	100.00	100.00	79.17	100.00	50.00	100.00	100.00	100.00	84.21	100.00	77.27	NA	100.00	100.00	100.00	100.00	57.14	100.00	97.83	100.00	94.74	92.31	84.62	100.00	100.00	0.00	0.373901	0.663989
N	cassette	MED6	chr14	-	chr14:71051661-71057982	chr14:71051661-71052472;chr14:71052501-71057982		chr14:71052473-71052500			92.31	95.83	96.97	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.888486	0.966777
N	jcn_only_AA	RAD1	chr5	-	chr5:34908957-34909362	chr5:34909054-34909362		chr5:34908957-34909053	chr5:34908956-34908957		100.00	100.00	100.00	100.00	94.44	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	cassette	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6918476-6919813	chr17:6918476-6919092;chr17:6919195-6919813		chr17:6919093-6919194			81.82	76.06	74.90	85.71	80.37	82.19	97.50	92.31	93.17	97.30	93.24	98.41	94.52	91.89	92.26	92.86	95.83	92.00	76.98	84.85	80.68	89.47	83.67	88.52	73.08	84.71	78.74	86.00	83.52	86.96	83.51	77.37	64.93	82.09	90.22	86.32	76.52	84.78	8.26	0.317376	0.709176
N	alternative_acceptor	SCN1B	chr19	+	chr19:35524644-35530020;chr19:35524644-35525948;chr19:35524644-35530101	chr19:35524644-35528066		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		0.00	5.88	2.06	0.00	0.00	4.17	0.00	6.25	0.00	0.00	0.00	9.09	0.00	0.00	2.99	0.00	3.70	0.00	0.00	0.00	2.94	11.11	3.33	14.63	0.00	4.17	3.45	3.57	2.78	5.77	0.00	0.00	0.00	4.17	4.17	6.58	0.00	0.00	0.00	0.624249	0.854752
N	alternative_last_exon	LRP10	chr14	+	chr14:23346263-23353882;chr14:23346263-23348407	chr14:23346263-23346635	chr14:23353883-23354224;chr14:23348408-23348519	chr14:23346636-23346805			94.35	96.55	94.19	100.00	98.11	100.00	100.00	99.45	100.00	100.00	100.00	100.00	100.00	99.43	100.00	100.00	100.00	100.00	100.00	97.81	96.40	100.00	98.04	94.59	92.00	98.73	97.85	100.00	98.04	100.00	96.63	95.41	95.74	97.56	97.22	100.00	98.28	98.27	-0.00	0.826431	0.901561
K	alternative_acceptor	KAT5	chr11	+	chr11:65481320-65482130	chr11:65481320-65481965		chr11:65481966-65482130	chr11:65482130-65482131		95.24	100.00	95.24	NA	100.00	NA	91.49	100.00	98.00	97.96	97.73	100.00	100.00	96.08	95.65	98.11	95.83	100.00	NA	100.00	100.00	100.00	97.44	92.86	100.00	95.00	100.00	96.43	89.74	100.00	95.56	95.45	NA	96.88	90.91	95.08	100.00	95.82	-4.18	0.720806	0.895448
N	intron_retention	GLG1	chr16	-	chr16:74486030-74486128				chr16:74486029-74486030;chr16:74486128-74486129		100.00	100.00	98.72	100.00	100.00	100.00	100.00	100.00	93.02	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	NA	99.42	100.00	99.10	100.00	100.00	100.00	100.00	96.61	97.00	100.00	100.00	100.00	100.00	100.00	98.40	100.00	100.00	100.00	100.00	100.00	0.00	0.546555	1.000000
N	alternative_acceptor	PNKP	chr19	-	chr19:50369786-50370310;chr19:50369762-50370310	chr19:50369703-50370310		chr19:50369703-50369761;chr19:50369762-50369785	chr19:50369702-50369703;chr19:50369761-50369762		90.00	100.00	85.00	NA	NA	NA	100.00	NA	90.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	NA	100.00	100.00	NA	93.33	NA	100.00	100.00	90.00	NA	NA	NA	90.00	93.75	100.00	81.25	83.33	100.00	100.00	95.00	-5.00	0.181690	0.660713
K	intron_retention	EIF4A1	chr17	+	chr17:7478577-7479847				chr17:7478576-7478577;chr17:7479847-7479848		13.04	1.59	18.18	6.90	5.88	0.00	1.22	3.92	0.00	3.51	3.57	1.75	5.00	3.08	0.00	4.38	1.69	0.00	6.25	14.81	6.45	20.83	16.67	16.07	NA	8.47	6.82	6.67	7.89	0.00	19.61	22.64	17.65	10.26	19.40	14.75	5.00	10.75	5.75	0.857637	1.000000
K	alternative_first_exon	TMUB1	chr7	-	chr7:150779681-150780158,chr7:150779681-150780169;chr7:150779681-150780520;chr7:150779681-150780424	chr7:150779681-150779850	chr7:150780521-150780633;chr7:150780425-150780487	chr7:150779851-150780178			78.26	66.67	54.84	NA	52.63	NA	40.00	39.39	25.93	63.64	66.67	NA	28.57	41.67	37.04	41.18	53.33	NA	58.33	71.43	58.06	75.00	56.52	NA	57.14	57.14	56.00	69.23	52.17	NA	69.23	68.75	53.85	76.47	75.00	66.67	55.50	63.19	7.69	0.339775	0.536334
K	alternative_acceptor	HGS,MYO15B	chr17	+	chr17:79654126-79655781	chr17:79654126-79655733		chr17:79655734-79655781	chr17:79655781-79655782		96.43	100.00	100.00	NA	NA	NA	96.88	100.00	100.00	97.26	94.64	100.00	91.43	97.87	100.00	100.00	93.85	100.00	NA	94.29	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	NA	94.64	98.04	100.00	98.44	98.94	0.50	0.670383	0.880186
N	cassette	TMEM255B	chr13	+	chr13:114504786-114514708	chr13:114504786-114507857;chr13:114508002-114514708		chr13:114507858-114508001			77.78	67.92	NA	64.71	66.67	69.23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	91.11	100.00	NA	100.00	86.11	100.00	81.82	81.25	NA	NA	80.00	76.92	84.00	83.33	88.00	100.00	100.00	100.00	84.91	82.62	-2.28	0.635946	0.867575
K	intron_retention	ATG4D	chr19	+	chr19:10662652-10662720				chr19:10662651-10662652;chr19:10662720-10662721		4.17	0.00	2.27	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	5.26	0.00	3.45	0.00	NA	5.00	8.70	0.00	0.00	0.00	7.50	11.36	7.41	4.35	4.76	6.67	0.00	4.58	4.58	0.924764	1.000000
K	intron_retention	PHF12	chr17	-	chr17:27233536-27233873				chr17:27233535-27233536;chr17:27233873-27233874		10.71	15.79	5.41	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.17	0.00	4.76	NA	0.00	6.25	10.53	NA	4.76	NA	0.00	0.00	7.50	NA	8.00	NA	12.50	8.51	10.00	0.00	4.55	6.25	0.00	3.12	3.12	0.875388	1.000000
N	jcn_only_AD	IFI6	chr1	-	chr1:27995047-27995759;chr1:27995047-27995810;chr1:27995047-27995731;chr1:27995047-27995755	chr1:27995047-27995743		chr1:27995732-27995743;chr1:27995744-27995755;chr1:27995756-27995759;chr1:27995760-27995810	chr1:27995743-27995744;chr1:27995755-27995756;chr1:27995759-27995760;chr1:27995810-27995811		14.69	13.43	14.46	15.95	17.50	18.57	14.46	16.53	15.80	16.19	15.82	18.11	15.54	17.33	16.72	17.59	16.52	17.76	16.99	16.49	18.76	16.01	14.68	17.95	16.34	14.82	14.98	17.84	12.61	17.49	14.68	14.62	15.17	15.45	15.46	16.37	15.36	15.65	0.30	0.552264	0.772010
K	cassette	RP11-295G20.2	chr1	-	chr1:231658384-231663083	chr1:231658384-231660171;chr1:231660294-231663083		chr1:231660172-231660293			0.00	0.00	NA	12.50	0.00	7.46	NA	NA	NA	7.14	NA	0.00	NA	NA	NA	NA	NA	8.33	0.00	0.00	9.09	NA	NA	NA	2.27	0.00	10.00	0.00	0.00	8.16	7.69	13.64	5.00	8.33	NA	7.69	1.14	0.00	-1.14	0.964742	0.990641
N	alternative_acceptor		chr9	+	chr9:140001900-140001993;chr9:140001900-140001989	chr9:140001900-140001982		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		69.57	100.00	78.26	NA	94.74	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	80.00	80.00	91.67	NA	92.00	NA	86.67	70.00	71.43	NA	93.33	NA	62.50	70.83	83.33	90.91	100.00	87.50	93.34	69.78	-23.55	0.004107	0.401280
K	intron_retention		chr16	-	chr16:4407261-4407968				chr16:4407260-4407261;chr16:4407968-4407969		4.26	3.73	6.15	0.00	1.75	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.99	4.00	6.86	3.19	0.00	0.00	0.00	0.00	2.02	3.92	3.26	3.57	1.47	0.00	3.06	1.01	-2.05	0.403223	1.000000
N	alternative_acceptor	SNX1	chr15	+	chr15:64428610-64429059;chr15:64428610-64429044	chr15:64428610-64429063		chr15:64429045-64429059;chr15:64429060-64429063	chr15:64429059-64429060;chr15:64429063-64429064		3.45	0.00	0.00	0.00	0.00	5.00	3.53	0.00	4.17	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	2.86	0.00	0.00	2.47	2.47	0.228553	0.682421
N	jcn_only_AA	TNNT1	chr19	-	chr19:55652706-55653224;chr19:55649443-55653224	chr19:55652671-55653224					96.46	100.00	100.00	96.23	93.94	93.41	NA	NA	NA	NA	NA	NA	NA	84.62	NA	NA	NA	NA	95.96	95.24	92.50	NA	100.00	100.00	97.00	96.43	100.00	100.00	93.33	95.83	100.00	NA	96.67	NA	NA	NA	96.84	96.43	-0.41	0.348153	0.663989
K	jcn_only_AD	C12orf57	chr12	+	chr12:7053729-7054933	chr12:7053816-7054933		chr12:7053729-7053815	chr12:7053728-7053729		54.84	64.00	60.78	66.67	70.31	61.64	83.33	NA	76.32	80.00	76.92	100.00	80.00	100.00	85.19	94.12	87.50	NA	56.96	50.00	62.92	48.72	64.00	66.67	59.74	73.91	64.41	63.64	78.26	71.43	42.86	34.88	56.41	72.50	64.29	53.33	61.87	54.84	-7.03	0.839171	0.926053
K	intron_retention		chr16	+	chr16:89970614-89971345				chr16:89970613-89970614;chr16:89971345-89971346		4.63	11.93	9.38	5.48	6.71	2.44	0.88	0.00	0.00	0.00	0.76	0.00	0.00	1.06	4.55	2.15	0.00	0.00	5.77	3.95	3.77	6.67	7.38	2.22	9.76	5.41	4.39	1.47	3.54	1.52	3.23	5.26	4.67	8.74	5.66	4.31	5.22	3.59	-1.63	0.750928	1.000000
K	cassette	RFC2	chr7	-	chr7:73646547-73649861	chr7:73646547-73648104;chr7:73648225-73649861		chr7:73648105-73648224			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	NA	0.00	7.14	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
K	jcn_only_AD	HLA-A	chr6	+	chr6:29912394-29912835	chr6:29912412-29912835		chr6:29912394-29912411	chr6:29912393-29912394		32.41	35.54	33.53	37.02	35.47	38.71	0.00	0.03	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.01	0.952130	0.974071
K	intron_retention	PITPNM1	chr11	-	chr11:67261309-67261392				chr11:67261308-67261309;chr11:67261392-67261393		8.89	4.65	14.55	NA	20.00	NA	0.00	3.33	0.00	0.00	0.00	NA	3.33	4.17	7.50	10.00	12.50	NA	9.52	11.54	13.33	NA	22.22	NA	19.23	8.57	12.24	NA	25.00	NA	29.17	13.64	8.33	11.11	16.67	NA	6.49	8.73	2.24	0.782896	1.000000
K	intron_retention	MGAT4B	chr5	-	chr5:179225069-179225164				chr5:179225068-179225069;chr5:179225164-179225165		5.62	3.80	5.08	5.17	3.82	4.35	0.00	0.00	0.00	0.00	0.00	2.56	1.10	0.00	0.00	1.45	1.03	0.00	4.17	4.35	2.41	6.00	5.60	0.00	1.97	6.45	3.70	4.44	2.63	0.00	7.14	7.14	7.93	2.82	2.50	1.85	2.88	4.98	2.10	0.964737	1.000000
N	alternative_acceptor	LILRA6,LILRB3	chr19	-	chr19:54722675-54722997;chr19:54722708-54722997	chr19:54722736-54722997		chr19:54722675-54722707;chr19:54722708-54722735	chr19:54722674-54722675;chr19:54722707-54722708		6.40	0.00	7.46	10.34	5.26	7.84	5.26	2.41	1.96	3.12	8.33	2.94	0.00	3.42	4.55	4.35	NA	0.00	7.69	5.50	5.56	6.25	9.09	9.09	NA	4.78	6.58	4.92	6.25	5.45	5.77	5.13	NA	8.70	0.00	8.00	2.63	5.14	2.51	0.511557	0.800006
N	jcn_only_AD	RPF1	chr1	+	chr1:84961747-84961926	chr1:84961756-84961926		chr1:84961747-84961755	chr1:84961746-84961747		0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	STARD3	chr17	+	chr17:37814776-37814974;chr17:37814776-37814991	chr17:37814776-37814961		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		10.00	14.81	8.89	NA	12.50	NA	0.00	5.88	5.00	4.76	3.77	0.00	4.55	7.69	6.67	0.00	2.63	0.00	8.33	13.04	6.25	9.52	10.26	5.00	NA	9.09	12.50	5.56	9.38	20.00	13.64	13.46	5.56	10.71	11.63	12.00	5.56	9.54	3.99	0.281041	0.709013
N	jcn_only_AA	FES	chr15	+	chr15:91433509-91433595;chr15:91433509-91433636	chr15:91433509-91433630		chr15:91433596-91433630;chr15:91433631-91433636	chr15:91433630-91433631;chr15:91433636-91433637		58.33	58.33	60.00	NA	60.00	NA	96.36	93.33	94.12	100.00	88.57	90.91	86.27	NA	NA	NA	85.71	100.00	60.61	73.68	50.00	NA	61.76	NA	73.68	75.00	52.38	NA	59.26	NA	50.00	53.85	61.70	NA	41.18	62.50	67.69	73.68	5.99	0.785849	0.908316
K	intron_retention		chr16	+	chr16:30783512-30785258				chr16:30783511-30783512;chr16:30785258-30785259		3.23	9.68	6.12	0.00	4.00	NA	0.00	0.00	0.00	0.00	2.27	0.00	2.08	0.00	4.35	0.00	3.85	0.00	0.00	4.35	6.45	0.00	4.35	4.76	0.00	0.00	2.27	0.00	4.35	0.00	4.00	4.48	14.29	5.41	4.08	5.71	1.04	1.61	0.57	0.739742	1.000000
K	alternative_acceptor	DPH1	chr17	+	chr17:1945170-1946269	chr17:1945170-1945898		chr17:1945899-1946269	chr17:1946269-1946270		100.00	92.00	100.00	100.00	90.62	82.76	96.77	95.45	100.00	95.12	93.65	100.00	100.00	100.00	100.00	98.31	96.83	88.89	83.33	93.10	93.62	88.57	100.00	100.00	95.65	100.00	100.00	96.77	92.73	88.46	100.00	91.67	94.12	100.00	89.80	100.00	94.89	100.00	5.11	0.133138	0.629354
K	intron_retention		chr14	-	chr14:21698526-21699116				chr14:21698525-21698526;chr14:21699116-21699117		12.50	0.00	10.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	4.69	5.38	1.03	4.85	0.00	3.90	5.61	0.00	0.00	0.90	14.42	12.50	3.03	7.84	5.88	5.22	0.00	6.50	6.50	0.154268	1.000000
K	intron_retention	SPSB3	chr16	-	chr16:1828050-1828134				chr16:1828049-1828050;chr16:1828134-1828135		21.88	6.56	17.86	6.67	6.82	NA	6.90	0.00	0.00	NA	0.00	NA	9.38	16.67	16.67	15.38	0.00	NA	15.38	20.00	6.67	0.00	18.92	10.00	11.11	13.64	14.58	8.33	10.71	NA	21.43	16.92	13.04	15.38	27.27	14.29	10.25	18.34	8.09	0.525647	1.000000
N	alternative_donor	IL4I1	chr19	-	chr19:8615579-8616634	chr19:8615579-8616623		chr19:8616624-8616634	chr19:8616634-8616635		97.33	100.00	98.01	NA	100.00	NA	100.00	95.31	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	NA	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	97.89	100.00	100.00	NA	100.00	100.00	100.00	96.00	95.74	92.59	100.00	98.66	-1.34	0.086314	0.475124
K	jcn_only_AA	RIC8A	chr11	+	chr11:210001-210574	chr11:210001-210570		chr11:210571-210574	chr11:210574-210575		92.86	93.94	94.44	100.00	100.00	NA	95.31	96.23	97.14	95.00	100.00	100.00	94.44	100.00	100.00	97.78	98.36	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.15	93.75	100.00	100.00	100.00	96.77	98.21	100.00	100.00	96.23	100.00	94.88	97.46	2.59	0.453901	0.716212
N	alternative_donor	ABCC10	chr6	+	chr6:43416943-43417159	chr6:43416948-43417159		chr6:43416943-43416947	chr6:43416942-43416943		12.50	7.46	7.14	NA	7.14	NA	0.00	0.00	4.76	NA	0.00	NA	0.00	0.00	3.70	NA	NA	NA	8.57	5.56	8.33	0.00	5.41	NA	22.22	4.00	9.68	7.69	0.00	7.69	6.25	9.68	6.45	7.14	3.23	7.69	6.96	4.78	-2.18	0.496076	0.749318
K	jcn_only_AA	CNST,MIA3	chr1	+	chr1:222837491-222838650	chr1:222837491-222838224		chr1:222838225-222838650	chr1:222838650-222838651		0.00	0.00	0.00	NA	5.00	0.00	0.00	5.41	2.13	0.00	0.00	3.28	3.12	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	NA	4.35	6.06	0.00	1.45	1.59	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.560532	0.791860
N	alternative_acceptor	EZH2	chr7	-	chr7:148504799-148506162	chr7:148504825-148506162		chr7:148504799-148504824	chr7:148504798-148504799		0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	2.56	0.00	0.88	7.50	0.00	0.00	0.00	0.00	0.00	2.08	1.18	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.513273	0.800638
K	alternative_donor	CES2,RP11-361L15.4	chr16	+	chr16:66976641-66977201	chr16:66976689-66977201		chr16:66976641-66976688	chr16:66976640-66976641		64.52	62.50	57.41	NA	56.00	75.00	76.19	100.00	92.31	83.33	90.00	80.00	88.24	100.00	76.19	86.67	84.85	90.91	66.67	65.00	68.42	NA	68.18	50.00	NA	83.33	66.67	NA	NA	NA	63.16	63.64	81.25	60.87	71.43	75.00	76.19	74.16	-2.03	0.624995	0.829448
N	jcn_only_AA		chr2	+	chr2:242598603-242606063	chr2:242598603-242606059		chr2:242606060-242606063	chr2:242606063-242606064		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.30	100.00	91.67	100.00	100.00	100.00	100.00	96.88	98.46	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.225771	0.663989
K	intron_retention	HNRNPDL	chr4	-	chr4:83346821-83347189				chr4:83346820-83346821;chr4:83347189-83347190		34.15	15.38	54.84	11.76	25.00	2.63	41.18	28.57	11.76	16.67	30.00	NA	57.14	25.00	52.94	32.26	45.00	NA	6.52	30.23	19.23	43.02	47.14	48.57	6.82	32.35	55.56	35.42	38.33	22.92	19.12	32.00	9.09	35.62	53.97	37.29	12.23	29.40	17.16	0.816241	1.000000
K	intron_retention	SRI	chr7	-	chr7:87838748-87839397				chr7:87838747-87838748;chr7:87839397-87839398		83.33	100.00	91.94	94.12	87.50	96.77	100.00	82.00	86.54	84.21	87.76	92.31	84.78	89.58	87.50	84.44	91.84	81.48	80.00	76.00	79.17	82.50	81.13	87.18	100.00	93.18	90.38	75.00	81.67	85.11	79.41	77.27	82.50	85.71	85.71	88.00	92.39	82.66	-9.73	0.301309	1.000000
N	alternative_donor		chr6	-	chr6:36936751-36937076;chr6:36936751-36937462;chr6:36936751-36937070	chr6:36936751-36937814		chr6:36937071-36937076;chr6:36937077-36937462;chr6:36937463-36937814	chr6:36937076-36937077;chr6:36937462-36937463;chr6:36937814-36937815		83.64	88.14	81.39	83.33	88.52	94.74	95.51	96.58	95.10	94.24	96.39	96.69	94.31	94.72	88.49	91.43	94.17	95.65	92.00	88.28	92.21	81.94	79.78	78.49	90.00	86.05	81.59	79.41	80.47	85.60	90.97	86.82	92.16	84.50	84.00	85.60	92.08	89.62	-2.45	0.420068	0.682782
K	intron_retention	PSMD2	chr3	+	chr3:184025314-184025401				chr3:184025313-184025314;chr3:184025401-184025402		5.43	0.88	5.51	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	1.43	4.96	2.31	3.88	3.29	5.26	0.00	2.40	4.13	1.52	1.96	0.00	8.63	7.65	5.63	3.57	0.88	3.68	0.44	3.68	3.24	0.394301	1.000000
K	alternative_acceptor	SRSF10	chr1	-	chr1:24298114-24298339	chr1:24298117-24298339		chr1:24298114-24298116	chr1:24298113-24298114		78.57	81.82	62.86	75.00	63.64	62.50	72.00	62.50	63.33	65.62	63.64	62.96	65.85	70.00	63.16	72.06	75.51	70.27	60.00	72.22	75.00	72.97	80.00	63.64	NA	53.85	77.78	73.68	68.18	66.67	70.00	77.78	54.55	69.70	78.26	83.78	65.85	70.00	4.15	0.868034	0.955706
N	alternative_donor	FLCN	chr17	-	chr17:17122524-17124850	chr17:17122524-17124073		chr17:17124074-17124850	chr17:17124850-17124851		17.39	50.00	13.04	NA	58.33	NA	7.89	14.29	7.14	2.08	4.35	0.00	5.13	13.79	4.17	7.14	4.17	0.00	NA	22.73	NA	16.67	18.75	11.54	NA	14.71	11.76	21.43	35.29	NA	35.00	19.05	91.67	20.31	22.22	12.50	28.95	16.05	-12.89	0.422861	0.685207
K	alternative_acceptor	ATG16L2	chr11	+	chr11:72528901-72532592;chr11:72528901-72532243;chr11:72528901-72531181	chr11:72528901-72532712		chr11:72531182-72532243;chr11:72532244-72532592;chr11:72532593-72532712	chr11:72532243-72532244;chr11:72532592-72532593;chr11:72532712-72532713		16.00	26.67	9.23	NA	NA	NA	76.92	NA	NA	NA	NA	NA	46.15	NA	NA	NA	NA	NA	20.00	28.57	27.27	NA	20.00	NA	14.29	33.33	14.29	NA	26.32	NA	40.00	23.91	30.77	41.18	16.67	23.08	28.72	30.95	2.23	0.569720	0.834831
K	jcn_only_AD	RPSA	chr3	+	chr3:39448256-39449111;chr3:39448326-39449111	chr3:39448574-39449111		chr3:39448256-39448325;chr3:39448326-39448573	chr3:39448255-39448256;chr3:39448325-39448326		11.76	0.00	5.43	1.59	1.75	0.00	0.94	12.20	0.00	0.59	0.48	1.43	0.53	4.55	0.00	0.61	0.55	0.74	2.38	15.38	3.23	2.00	1.63	2.63	0.00	0.00	5.56	0.00	0.45	0.82	16.67	20.83	4.26	0.95	2.13	0.38	0.73	11.98	11.25	0.020366	0.339989
N	jcn_only_AD	SIPA1	chr11	+	chr11:65410075-65412425;chr11:65410111-65412425	chr11:65412298-65412425		chr11:65410075-65410110;chr11:65410111-65412297	chr11:65410074-65410075;chr11:65410110-65410111		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	5.88	0.00	NA	0.00	0.00	3.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.194555	0.657607
N	cassette	TRIM27	chr6	-	chr6:28872443-28876584	chr6:28872443-28875012;chr6:28875040-28876584		chr6:28875013-28875039			100.00	84.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.743302	0.915089
N	jcn_only_AD	MMD,RP11-51F16.8,STRADA	chr17	-	chr17:61781943-61783994	chr17:61781943-61782179		chr17:61782180-61783994	chr17:61783994-61783995		0.00	0.00	1.79	NA	0.00	NA	0.00	4.26	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	NA	5.00	0.00	10.00	0.00	0.00	0.00	0.174718	0.657607
N	jcn_only_AD	USP19	chr3	-	chr3:49147796-49147948;chr3:49147796-49147876	chr3:49147796-49147880		chr3:49147877-49147880;chr3:49147881-49147948	chr3:49147880-49147881;chr3:49147948-49147949		4.35	0.00	3.70	0.00	2.27	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	6.00	4.88	0.00	0.00	0.00	5.00	0.00	0.00	2.44	9.52	5.88	2.78	6.82	4.08	1.67	0.00	12.50	5.77	0.00	2.17	2.17	0.399771	0.664304
N	jcn_only_AD	AARS2	chr6	-	chr6:31854460-31854596	chr6:31854460-31854551		chr6:31854552-31854596	chr6:31854596-31854597		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	NA	93.33	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	0.00	0.373901	0.657607
N	cassette	NAA38	chr17	-	chr17:7760517-7786552	chr17:7760517-7769808;chr17:7769877-7786552		chr17:7769809-7769876			0.00	7.69	0.00	7.69	6.25	9.09	NA	8.33	4.55	NA	0.00	NA	8.33	NA	0.00	NA	9.09	NA	2.56	0.00	6.35	NA	5.26	NA	3.28	NA	5.56	NA	6.25	NA	11.76	3.57	2.82	6.25	8.33	5.88	3.28	4.17	0.89	0.979957	0.995133
K	cassette	ECHDC1	chr6	-	chr6:127637120-127648146;chr6:127636042-127648146	chr6:127637120-127637594,chr6:127636042-127637594;chr6:127637648-127648146		chr6:127637595-127637647			NA	60.00	85.71	NA	NA	NA	66.07	66.67	76.67	72.73	69.57	86.36	62.75	60.00	81.82	86.11	70.73	88.89	70.00	71.43	70.00	75.00	83.33	75.00	NA	75.00	77.78	73.33	68.18	61.11	NA	77.78	NA	83.33	87.50	77.78	64.41	69.05	4.64	0.399781	0.715834
K	intron_retention	IKBKB	chr8	+	chr8:42176940-42177102				chr8:42176939-42176940;chr8:42177102-42177103		0.00	7.14	12.90	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	4.76	0.00	NA	NA	0.00	NA	NA	5.00	6.67	0.00	0.00	12.50	0.00	5.88	0.00	0.00	4.17	NA	10.00	2.50	7.14	3.00	0.00	-3.00	0.533381	1.000000
K	intron_retention	CUEDC1	chr17	-	chr17:55943906-55944717				chr17:55943905-55943906;chr17:55944717-55944718		18.87	12.20	23.53	NA	20.69	NA	2.33	2.38	3.57	7.69	0.00	0.00	6.98	4.76	10.34	0.00	0.00	0.00	14.29	18.18	6.67	18.75	18.92	16.67	8.33	15.79	17.65	15.00	17.14	20.00	25.00	13.89	0.00	23.08	20.00	18.18	7.66	16.98	9.33	0.401696	1.000000
N	cassette	NFKBIE	chr6	-	chr6:44229586-44232718;chr6:44228277-44232718	chr6:44229586-44230296,chr6:44228277-44230296;chr6:44230400-44232718		chr6:44230297-44230399			92.96	100.00	95.83	100.00	100.00	97.14	100.00	100.00	97.91	100.00	97.60	99.32	100.00	100.00	96.52	99.14	97.25	99.26	100.00	97.53	100.00	100.00	95.28	98.26	NA	96.33	97.54	100.00	100.00	98.26	100.00	95.59	95.24	90.79	96.55	100.00	100.00	98.77	-1.23	0.427831	0.735945
N	coord_cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28989366-28994177	chr16:28989366-28990475;chr16:28990628-28990725;chr16:28990793-28994177		chr16:28990476-28990627;chr16:28990726-28990792		chr16:28989229-28989365;chr16:28994178-28994243	100.00	85.71	100.00	NA	86.96	NA	97.73	100.00	100.00	97.30	95.56	100.00	100.00	100.00	95.24	97.96	97.30	100.00	86.67	93.75	100.00	89.29	95.45	100.00	100.00	100.00	93.33	100.00	94.44	88.89	90.48	84.21	82.35	94.44	100.00	93.94	92.20	100.00	7.80	0.192197	0.643829
N	jcn_only_AA	CD36	chr7	+	chr7:80303464-80305699;chr7:80303464-80305455;chr7:80303464-80305044	chr7:80303464-80305423		chr7:80305045-80305423;chr7:80305424-80305455;chr7:80305456-80305699	chr7:80305423-80305424;chr7:80305455-80305456;chr7:80305699-80305700		8.33	0.00	25.00	NA	5.77	NA	3.46	2.44	4.17	4.78	3.89	5.20	11.70	0.00	NA	8.33	9.21	4.70	8.82	27.27	0.00	19.15	23.48	23.08	0.00	7.89	19.70	7.75	6.57	4.69	5.00	10.00	9.52	8.18	13.57	10.00	6.14	6.45	0.30	0.536588	0.774801
K	intron_retention		chr11	+	chr11:67810965-67811037				chr11:67810964-67810965;chr11:67811037-67811038		7.69	5.13	7.05	9.09	3.03	NA	1.09	2.08	1.25	2.17	1.49	0.00	1.80	2.68	3.60	1.85	1.23	0.00	7.14	9.15	3.45	4.26	7.55	2.13	11.11	5.00	6.30	4.62	5.71	0.00	12.05	11.61	5.88	10.53	8.86	5.88	5.50	6.35	0.84	0.911545	1.000000
N	alternative_acceptor	MOV10	chr1	+	chr1:113242605-113242840	chr1:113242605-113242723		chr1:113242724-113242840	chr1:113242840-113242841		9.84	9.26	12.50	15.38	14.63	15.76	4.55	1.85	1.28	0.00	0.00	0.00	0.00	2.29	3.23	5.88	0.00	7.14	15.15	12.50	13.33	20.00	9.09	21.15	12.12	6.13	9.43	18.75	9.52	13.04	17.62	18.80	9.76	11.76	7.14	21.82	9.51	7.98	-1.53	0.976393	0.994346
N	alternative_donor	CPNE2	chr16	+	chr16:57180234-57181462	chr16:57181234-57181462		chr16:57180234-57181233	chr16:57180233-57180234		4.92	5.43	9.84	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	2.27	4.35	1.89	2.56	2.11	3.70	2.00	9.38	5.63	0.00	1.39	0.00	6.90	11.11	1.92	4.00	5.00	2.74	1.96	4.63	2.67	0.273556	0.645608
K	intron_retention	INPPL1	chr11	+	chr11:71942234-71942541				chr11:71942233-71942234;chr11:71942541-71942542		2.00	20.00	4.05	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	6.38	0.00	7.50	2.13	1.82	NA	0.00	NA	0.00	1.85	NA	0.00	2.44	0.00	3.75	0.00	-3.75	0.816802	1.000000
N	jcn_only_AD	LEMD2	chr6	-	chr6:33748931-33752128	chr6:33748931-33752115		chr6:33752116-33752128	chr6:33752128-33752129		0.00	0.00	3.77	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.55	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.65	0.00	0.00	0.00	0.363217	0.657607
K	alternative_first_exon	EGLN2,RAB4B-EGLN2	chr19	+	chr19:41305736-41306243,chr19:41305612-41306243,chr19:41305874-41306243;chr19:41305544-41306243;chr19:41292884-41306243	chr19:41305168-41306243	chr19:41305420-41305543;chr19:41292753-41292883	chr19:41305092-41305167			93.02	100.00	100.00	NA	100.00	NA	98.08	96.61	100.00	100.00	97.56	96.23	100.00	98.21	97.73	100.00	100.00	100.00	NA	100.00	94.44	100.00	100.00	100.00	100.00	100.00	92.11	100.00	100.00	100.00	100.00	96.30	100.00	100.00	96.97	100.00	100.00	99.10	-0.90	0.219231	0.424823
K	intron_retention	ARHGDIA	chr17	-	chr17:79825796-79826460				chr17:79825795-79825796;chr17:79826460-79826461		92.31	90.54	94.12	89.49	90.86	86.67	93.84	94.12	93.26	91.46	93.06	93.44	93.99	93.82	93.83	93.43	93.47	91.56	89.66	92.04	94.46	91.80	92.78	92.47	86.91	93.36	91.63	93.71	91.20	89.68	92.47	92.12	89.16	89.91	91.95	91.70	90.10	92.91	2.81	0.251517	1.000000
N	alternative_donor	SNRPD3	chr22	+	chr22:24952040-24953624;chr22:24952197-24953624	chr22:24952026-24953624		chr22:24952026-24952039;chr22:24952040-24952196	chr22:24952025-24952026;chr22:24952039-24952040		5.00	2.06	0.00	0.00	8.00	0.00	3.61	0.00	0.00	3.66	0.00	0.00	8.62	0.00	0.00	5.31	5.04	5.26	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	3.33	8.33	0.00	0.00	0.00	0.00	5.56	0.00	1.03	0.00	-1.03	0.365494	0.650093
K	jcn_only_AD	PSTPIP1	chr15	+	chr15:77320985-77321869	chr15:77320994-77321869		chr15:77320985-77320993	chr15:77320984-77320985		100.00	100.00	98.44	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	90.00	100.00	NA	100.00	NA	100.00	100.00	98.82	NA	100.00	100.00	100.00	100.00	96.23	100.00	100.00	NA	100.00	97.37	98.35	100.00	100.00	100.00	100.00	100.00	0.00	0.439358	0.696909
N	alternative_acceptor	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837462		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		9.01	4.69	9.68	0.00	9.33	0.00	13.41	6.38	9.29	13.95	13.04	13.75	8.54	7.63	6.72	16.22	13.39	8.11	10.53	6.42	11.24	0.00	0.00	2.94	0.00	8.39	6.42	10.42	12.79	14.29	8.70	0.00	9.76	10.94	10.39	12.82	9.15	8.01	-1.14	0.974610	0.994346
K	intron_retention		chr19	-	chr19:8604913-8606789				chr19:8604912-8604913;chr19:8606789-8606790		1.69	7.04	2.86	0.00	2.74	NA	1.35	0.87	0.00	1.75	1.89	4.00	1.05	1.68	0.00	0.00	0.56	0.00	3.33	1.53	1.06	0.00	1.72	0.00	2.33	0.00	1.34	3.23	2.06	6.25	1.22	0.93	2.08	2.08	3.67	0.00	2.21	1.38	-0.83	0.572530	1.000000
K	intron_retention	RRBP1	chr20	-	chr20:17639530-17640423				chr20:17639529-17639530;chr20:17640423-17640424		96.34	92.00	95.12	NA	NA	NA	95.45	96.98	95.10	94.25	94.78	94.12	100.00	97.69	94.44	92.31	94.83	95.85	NA	100.00	84.62	90.00	89.29	94.12	100.00	95.69	96.23	96.67	100.00	91.30	90.91	83.87	NA	90.91	100.00	95.65	97.72	96.66	-1.06	0.968674	1.000000
K	alternative_donor	ASCC2	chr22	-	chr22:30197100-30198050	chr22:30197100-30197982		chr22:30197983-30198050	chr22:30198050-30198051		96.00	100.00	100.00	NA	96.43	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	88.24	100.00	97.73	100.00	100.00	90.00	93.10	93.33	100.00	100.00	92.86	91.18	100.00	100.00	100.00	91.30	100.00	94.43	-5.57	0.038635	0.357790
K	intron_retention	TRPC4AP	chr20	-	chr20:33591420-33592260				chr20:33591419-33591420;chr20:33592260-33592261		3.23	2.17	2.65	4.88	2.08	5.00	1.10	1.79	1.70	2.60	2.48	1.54	1.57	1.78	3.21	2.99	2.65	4.84	0.00	3.89	3.80	6.00	3.00	8.70	0.00	4.49	3.43	5.56	3.61	6.90	2.61	2.75	0.00	9.90	5.36	5.99	0.55	2.92	2.37	0.043928	1.000000
K	intron_retention	PPP1R35	chr7	-	chr7:100033157-100033253				chr7:100033156-100033157;chr7:100033253-100033254		28.57	35.00	30.77	23.53	38.46	15.38	0.00	21.43	23.08	0.00	3.57	NA	6.67	14.29	18.75	21.43	11.11	NA	12.20	24.00	18.18	NA	27.78	NA	18.18	21.43	22.22	23.08	24.00	21.43	36.11	32.35	23.53	35.71	33.33	23.53	15.19	22.71	7.53	0.582070	1.000000
K	intron_retention		chr6	+	chr6:32946166-32947604				chr6:32946165-32946166;chr6:32947604-32947605		2.61	5.73	3.98	2.08	1.03	0.00	1.25	0.80	0.57	0.61	0.81	0.00	1.89	0.72	1.32	1.82	1.79	2.60	4.17	5.42	4.90	3.88	4.03	6.90	0.00	2.73	4.74	3.76	1.90	2.01	6.81	7.63	5.97	5.67	5.43	6.85	3.03	2.67	-0.36	0.754297	1.000000
K	alternative_first_exon	PPP2R4	chr9	+	chr9:131901929-131904723;chr9:131904362-131904723;chr9:131899972-131904723;chr9:131904198-131904723	chr9:131902431-131904723	chr9:131901661-131901928;chr9:131904233-131904361;chr9:131899871-131899971;chr9:131903925-131904197	chr9:131902287-131902430			0.00	0.00	4.84	NA	8.33	NA	13.64	0.00	1.75	11.43	10.20	9.30	13.46	0.00	0.00	7.89	6.54	9.68	NA	0.00	0.00	16.67	9.80	11.11	0.00	0.00	2.63	8.33	21.74	8.33	1.96	1.54	13.33	8.70	2.86	4.08	13.33	0.00	-13.33	0.078222	0.227014
K	intron_retention	AP1G2	chr14	-	chr14:24033870-24034327				chr14:24033869-24033870;chr14:24034327-24034328		13.33	0.00	13.04	NA	NA	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	3.12	0.00	NA	0.00	NA	NA	0.00	NA	NA	14.29	NA	0.00	5.00	11.54	NA	7.14	NA	0.00	7.41	NA	NA	6.67	9.09	0.00	1.56	1.56	0.526427	1.000000
N	jcn_only_AA	ZSWIM8	chr10	+	chr10:75557364-75557587;chr10:75557364-75557693	chr10:75557364-75557538		chr10:75557539-75557587;chr10:75557588-75557693	chr10:75557587-75557588;chr10:75557693-75557694		96.67	100.00	97.62	NA	NA	NA	100.00	90.48	100.00	93.10	95.83	100.00	100.00	85.71	100.00	93.55	100.00	100.00	NA	92.50	NA	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	NA	85.71	94.64	NA	93.62	86.11	95.83	100.00	91.49	-8.51	0.090536	0.663989
K	intron_retention	SRRM2	chr16	+	chr16:2811700-2821304				chr16:2811699-2811700;chr16:2821304-2821305		97.26	100.00	95.05	100.00	100.00	100.00	88.46	90.70	87.34	87.27	89.66	85.71	87.01	91.67	94.12	89.09	82.50	81.82	100.00	100.00	100.00	96.61	100.00	93.65	100.00	100.00	97.87	100.00	97.83	97.53	100.00	100.00	100.00	92.59	92.00	95.79	100.00	98.63	-1.37	0.989253	1.000000
K	intron_retention	TFEC	chr7	-	chr7:115580986-115581946				chr7:115580985-115580986;chr7:115581946-115581947		21.74	13.04	26.14	14.29	9.38	10.00	15.49	8.08	9.14	9.43	14.06	12.04	20.69	6.16	11.98	12.50	18.37	9.20	9.09	15.38	12.12	26.19	18.18	20.48	NA	16.16	25.00	16.30	14.29	14.00	12.05	18.75	NA	23.30	25.00	15.20	14.27	13.71	-0.55	0.791480	1.000000
K	alternative_donor	CXXC1	chr18	-	chr18:47810933-47811101	chr18:47810933-47811089		chr18:47811090-47811101	chr18:47811101-47811102		2.22	0.00	1.37	NA	2.08	NA	0.00	3.57	3.33	4.17	0.00	NA	2.78	0.00	3.45	0.00	1.82	NA	5.56	2.00	2.17	4.55	2.94	0.00	0.00	2.86	2.99	5.56	3.57	6.25	2.00	2.25	2.63	8.70	4.65	0.00	1.31	2.11	0.80	0.795631	0.925498
K	intron_retention	AGRN	chr1	+	chr1:987196-989132				chr1:987195-987196;chr1:989132-989133		4.63	1.59	3.36	4.00	1.54	0.00	0.00	0.71	0.42	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	3.87	1.85	5.88	6.67	7.32	0.00	2.72	2.38	5.17	1.75	4.12	2.67	1.85	0.00	8.96	8.16	6.88	0.00	2.70	2.70	0.109342	1.000000
N	jcn_only_AA	TNFAIP2	chr14	+	chr14:103601689-103602145;chr14:103601689-103603218;chr14:103601689-103602150;chr14:103601689-103601959	chr14:103601689-103606009					2.38	0.00	3.80	0.00	0.00	NA	0.00	0.00	0.00	0.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	30.00	4.08	10.81	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.95	5.61	NA	1.55	0.00	0.33	0.00	1.19	1.19	0.586723	0.809826
K	jcn_only_AD	DGCR14	chr22	-	chr22:19124946-19125815	chr22:19124946-19125727		chr22:19125728-19125815	chr22:19125815-19125816		95.65	100.00	93.10	85.71	93.55	92.59	100.00	100.00	91.30	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	96.30	86.67	100.00	92.86	100.00	100.00	100.00	100.00	94.12	94.59	95.00	100.00	100.00	93.02	100.00	97.83	-2.17	0.227130	0.657607
K	intron_retention	CNDP2	chr18	+	chr18:72183628-72185733				chr18:72183627-72183628;chr18:72185733-72185734		1.58	0.00	3.66	0.00	0.00	16.67	0.00	0.00	0.52	0.80	0.57	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.00	1.71	0.00	2.47	0.68	1.49	0.00	0.76	0.91	1.61	1.94	2.37	0.00	0.84	0.00	4.23	0.66	3.22	0.00	0.63	0.63	0.276904	1.000000
K	cassette	RER1	chr1	+	chr1:2328660-2332295	chr1:2328660-2330853;chr1:2330954-2332295		chr1:2330854-2330953			95.08	93.57	95.62	95.83	93.71	95.59	100.00	100.00	98.98	97.44	98.68	100.00	100.00	99.02	100.00	97.27	99.30	98.77	97.30	99.03	96.58	98.28	97.76	97.14	100.00	100.00	97.52	100.00	100.00	100.00	94.74	90.68	97.67	95.18	97.35	97.27	98.84	99.03	0.19	0.939341	0.985128
N	cassette	SIPA1	chr11	+	chr11:65412601-65413691	chr11:65412601-65413324;chr11:65413429-65413691		chr11:65413325-65413428			100.00	87.27	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	95.24	100.00	100.00	100.00	0.00	0.262196	0.709176
K	intron_retention	DOK3	chr5	-	chr5:176935544-176936475				chr5:176935543-176935544;chr5:176936475-176936476		12.70	17.02	14.63	NA	4.17	NA	2.83	0.00	0.00	0.00	0.00	NA	4.00	0.00	0.00	0.00	0.00	NA	0.00	8.00	7.14	NA	9.80	NA	NA	1.59	6.98	10.00	10.81	NA	4.76	13.21	11.76	5.00	10.91	NA	4.00	3.17	-0.83	0.735946	1.000000
K	alternative_first_exon	ARRB2	chr17	+	chr17:4619325-4619441;chr17:4614040-4619441	chr17:4619329-4619441	chr17:4613784-4614039	chr17:4618884-4619328			93.06	100.00	96.77	NA	96.88	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.73	100.00	94.44	95.45	100.00	100.00	98.33	96.25	100.00	98.46	100.00	91.67	96.30	90.91	97.37	97.14	93.48	100.00	98.03	-1.97	0.569101	0.690681
N	alternative_acceptor	RHOT2	chr16	+	chr16:719607-720122	chr16:719607-720049		chr16:720050-720122	chr16:720122-720123		0.00	0.00	8.33	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	NA	7.14	3.85	0.00	0.00	9.09	3.70	9.09	4.35	NA	6.67	6.67	NA	5.00	6.25	3.12	0.00	2.50	2.50	0.088060	0.586065
N	alternative_acceptor	GIGYF1	chr7	-	chr7:100279395-100279486	chr7:100279412-100279486		chr7:100279395-100279411	chr7:100279394-100279395		8.82	13.79	8.16	NA	NA	NA	7.14	NA	11.11	NA	0.00	NA	7.69	NA	12.50	NA	0.00	NA	NA	5.88	NA	9.09	14.29	NA	7.14	13.33	3.03	NA	NA	NA	14.29	11.11	NA	0.00	9.09	9.09	7.42	11.07	3.66	0.544878	0.822684
K	intron_retention	TUBB4B	chr9	+	chr9:140136282-140136362				chr9:140136281-140136282;chr9:140136362-140136363		4.46	7.14	7.14	4.00	2.44	0.00	0.00	0.00	2.75	2.00	1.32	1.20	0.40	0.75	2.56	1.58	0.00	0.00	3.33	3.70	5.48	4.50	1.99	2.83	0.00	2.15	2.82	1.69	2.44	0.00	12.50	13.33	15.62	5.63	2.56	1.57	1.86	2.92	1.06	0.972671	1.000000
N	alternative_acceptor	ATP13A1	chr19	-	chr19:19756376-19756455;chr19:19756321-19756455	chr19:19756342-19756455		chr19:19756321-19756341;chr19:19756342-19756375	chr19:19756320-19756321;chr19:19756341-19756342		97.67	98.96	100.00	100.00	92.86	89.26	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	94.34	100.00	86.96	100.00	96.49	100.00	100.00	100.00	91.43	94.44	94.56	94.44	86.67	92.31	100.00	92.86	100.00	94.29	97.52	95.65	96.55	97.67	98.24	100.00	1.76	0.564405	0.831700
N	alternative_acceptor	GOSR1,TMEM106A	chr17	+	chr17:28847040-28849271	chr17:28847040-28849260		chr17:28849261-28849271	chr17:28849271-28849272		5.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	2.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	7.69	4.00	0.00	NA	0.00	0.00	0.00	4.35	3.92	15.38	4.55	0.00	5.00	0.00	2.86	0.00	0.00	0.00	0.373190	0.709013
N	alternative_acceptor	EVL	chr14	+	chr14:100608131-100608344;chr14:100608131-100610044;chr14:100608131-100610037	chr14:100608131-100610350		chr14:100608345-100610037;chr14:100610038-100610044;chr14:100610045-100610350	chr14:100610037-100610038;chr14:100610044-100610045;chr14:100610350-100610351		0.00	0.00	NA	7.69	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	jcn_only_AD	KHSRP,TYROBP	chr19	-	chr19:6415469-6415619	chr19:6415469-6415544		chr19:6415545-6415619	chr19:6415619-6415620		91.30	100.00	91.67	NA	90.91	90.00	92.31	100.00	95.00	89.62	90.38	93.62	89.74	90.00	87.50	86.46	87.23	86.49	NA	95.00	100.00	90.32	94.44	100.00	84.62	100.00	91.18	95.65	89.47	89.47	88.89	88.00	90.91	91.18	96.67	97.22	90.91	93.15	2.24	0.426104	0.687492
N	jcn_only_AA	RP1-130H16.18,TBC1D10A	chr22	-	chr22:30690827-30690929	chr22:30690851-30690929		chr22:30690827-30690850	chr22:30690826-30690827		NA	81.82	100.00	90.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	96.67	NA	NA	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	alternative_donor	NPL	chr1	+	chr1:182759040-182763490	chr1:182761422-182763490		chr1:182759040-182761421	chr1:182759039-182759040		85.71	73.68	82.35	NA	NA	NA	88.57	100.00	80.00	85.00	79.59	85.71	94.59	100.00	NA	100.00	91.18	100.00	NA	91.30	NA	100.00	91.67	100.00	100.00	100.00	81.48	NA	86.21	NA	86.67	89.66	NA	100.00	90.48	95.00	91.58	95.65	4.07	0.492088	0.747116
N	cassette	DRAM2	chr1	-	chr1:111663316-111668848;chr1:111663316-111667363	chr1:111663316-111665237;chr1:111665266-111668848,chr1:111665266-111667363		chr1:111665238-111665265			5.83	0.00	4.35	0.00	1.54	NA	0.54	0.98	2.38	0.00	0.57	0.00	0.00	1.41	0.00	0.00	0.67	0.00	0.00	3.80	1.89	0.00	0.00	0.00	0.00	2.30	4.35	0.00	0.97	0.00	2.04	2.67	0.00	1.92	1.52	0.00	0.00	2.17	2.17	0.015441	0.369835
N	alternative_acceptor	PITHD1	chr1	+	chr1:24112914-24113764	chr1:24112914-24113747		chr1:24113748-24113764	chr1:24113764-24113765		0.00	0.00	4.08	0.00	0.87	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.64	0.00	0.00	3.45	0.00	1.92	0.61	0.00	0.00	0.00	0.00	0.00	1.24	0.00	5.88	3.92	0.00	0.00	0.96	3.12	0.00	0.00	0.00	0.226413	0.679463
K	alternative_donor	CLOCK,TNIP2	chr4	-	chr4:2747263-2749381	chr4:2747263-2747755		chr4:2747756-2749381	chr4:2749381-2749382		4.26	0.00	3.94	2.63	0.00	0.00	0.00	2.47	0.97	3.60	1.61	4.92	0.00	1.45	0.91	1.60	2.27	3.12	0.00	3.77	2.04	2.41	2.99	5.50	NA	4.49	4.23	4.23	2.27	4.69	2.86	4.00	0.00	5.00	4.23	5.97	0.00	3.31	3.31	0.001087	0.090365
N	cassette	APEH	chr3	+	chr3:49716383-49717973	chr3:49716383-49717025;chr3:49717078-49717973		chr3:49717026-49717077			100.00	100.00	93.55	NA	100.00	NA	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	100.00	88.24	100.00	100.00	NA	100.00	92.86	100.00	100.00	100.00	100.00	83.87	88.46	100.00	95.12	93.55	100.00	100.00	0.00	0.853575	0.950337
N	cassette	UBE2B	chr5	+	chr5:133710155-133724015;chr5:133710155-133725915;chr5:133710155-133716409	chr5:133710155-133712359;chr5:133712386-133724015,chr5:133712386-133725915,chr5:133712386-133716409		chr5:133712360-133712385			93.75	100.00	97.60	100.00	100.00	100.00	95.45	100.00	96.25	99.05	97.53	98.95	100.00	98.02	95.56	98.58	100.00	97.47	94.74	94.31	100.00	98.92	98.80	100.00	NA	97.44	98.91	100.00	98.57	100.00	92.79	92.14	100.00	99.19	100.00	96.99	100.00	95.88	-4.12	0.266385	0.709176
N	jcn_only_AD	NSMCE2	chr8	+	chr8:126341352-126369460;chr8:126114730-126369460	chr8:126194499-126369460					100.00	100.00	97.73	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.24	100.00	100.00	100.00	100.00	96.15	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr22	+	chr22:39916757-39917358				chr22:39916756-39916757;chr22:39917358-39917359		13.54	7.14	11.02	7.41	7.09	6.67	1.44	1.03	0.00	1.33	0.32	0.41	3.73	0.83	0.88	1.64	1.61	0.49	7.14	14.89	9.30	8.09	5.52	9.41	0.00	8.41	8.00	5.11	6.14	5.39	14.07	11.73	9.62	8.46	8.38	7.87	5.43	10.97	5.54	0.468665	1.000000
N	alternative_donor		chr6	-	chr6:36949449-36952891;chr6:36949449-36952455	chr6:36949449-36953628		chr6:36952456-36952891;chr6:36952892-36953628	chr6:36952891-36952892;chr6:36953628-36953629		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.59	100.00	100.00	100.00	100.00	100.00	99.36	100.00	100.00	99.24	99.12	90.91	99.54	100.00	98.88	100.00	98.97	100.00	100.00	100.00	99.15	100.00	99.54	100.00	99.80	-0.20	0.443195	0.703566
K	cassette	UBAP2L	chr1	+	chr1:154241431-154242675;chr1:154241431-154243356	chr1:154241431-154241837;chr1:154241889-154242675,chr1:154241889-154243356		chr1:154241838-154241888			18.92	33.33	10.20	6.67	12.12	25.00	27.08	41.67	28.95	25.00	20.00	30.77	35.71	25.93	22.45	23.08	37.93	43.75	27.59	18.92	16.67	20.00	18.37	20.00	22.22	22.22	15.22	27.78	18.52	22.22	15.79	13.33	16.00	21.21	9.09	19.35	27.34	20.57	-6.77	0.538451	0.810127
N	cassette	LCMT1	chr16	+	chr16:25151569-25172422;chr16:25151569-25175918	chr16:25151569-25162874;chr16:25162937-25172422,chr16:25162937-25175918		chr16:25162875-25162936			94.83	100.00	94.44	NA	94.12	100.00	92.86	90.91	96.30	100.00	93.94	85.71	91.30	97.06	100.00	86.36	94.12	94.44	95.83	95.56	92.59	100.00	95.45	95.24	100.00	87.18	97.14	95.00	100.00	92.68	93.94	94.44	100.00	96.30	100.00	94.87	97.91	94.38	-3.53	0.148034	0.709176
K	intron_retention	ATP13A1	chr19	-	chr19:19758338-19758407				chr19:19758337-19758338;chr19:19758407-19758408		6.98	8.89	6.90	NA	8.70	NA	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	2.63	0.00	2.63	0.00	11.43	0.00	0.00	9.68	10.34	4.35	4.76	6.45	7.14	3.33	7.32	15.15	14.29	9.09	8.82	5.26	8.33	2.17	5.87	3.70	0.667751	1.000000
N	jcn_only_AA	CFLAR	chr2	+	chr2:201983625-201994451;chr2:201983625-201997751	chr2:201983625-201983750					6.25	NA	0.00	NA	NA	92.86	3.23	3.06	4.20	9.09	17.65	5.56	12.50	3.68	2.68	16.67	13.33	0.00	NA	0.00	43.75	16.67	7.14	5.41	100.00	7.02	3.45	27.27	NA	23.08	18.18	17.39	76.92	12.00	9.52	7.94	44.71	4.96	-39.75	0.177217	0.663989
N	alternative_acceptor	CD33	chr19	+	chr19:51738932-51739077;chr19:51738932-51742327	chr19:51738932-51742772		chr19:51739078-51742327;chr19:51742328-51742772	chr19:51742327-51742328;chr19:51742772-51742773		91.11	96.45	79.35	100.00	95.16	100.00	97.89	100.00	96.43	100.00	98.02	100.00	96.26	NA	90.91	97.06	96.39	100.00	93.26	90.00	94.92	100.00	93.94	96.30	97.14	89.29	84.16	78.95	91.30	91.67	100.00	94.83	98.90	97.87	89.74	97.50	96.80	91.11	-5.69	0.362621	0.709013
N	alternative_acceptor		chr11	+	chr11:124500382-124500702	chr11:124500382-124500640		chr11:124500641-124500702	chr11:124500702-124500703		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	97.30	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention		chr17	-	chr17:7529933-7530024				chr17:7529932-7529933;chr17:7530024-7530025		93.33	75.86	100.00	NA	76.92	90.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	88.89	83.33	73.33	NA	70.00	NA	97.14	82.35	90.00	NA	NA	66.67	90.48	86.96	91.89	NA	NA	90.00	90.39	86.91	-3.48	0.981653	1.000000
K	intron_retention	ANAPC16	chr10	+	chr10:73983815-73990123				chr10:73983814-73983815;chr10:73990123-73990124		2.63	4.65	2.33	6.90	7.69	19.51	0.00	0.00	1.03	0.00	0.00	0.00	2.25	0.00	1.02	5.45	0.00	0.00	12.50	5.88	4.11	4.35	2.44	6.67	11.63	0.00	3.53	8.00	2.82	5.56	3.57	1.18	8.64	3.57	5.62	1.45	6.65	1.31	-5.33	0.832044	1.000000
K	alternative_acceptor	AKT1	chr14	-	chr14:105239331-105239587	chr14:105239430-105239587		chr14:105239331-105239429	chr14:105239330-105239331		98.18	100.00	100.00	NA	96.00	NA	95.60	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.562959	0.831205
K	cassette	CD74	chr5	-	chr5:149782189-149785821;chr5:149782189-149784242	chr5:149782189-149782683;chr5:149782876-149785821,chr5:149782876-149784242		chr5:149782684-149782875			16.55	13.83	15.80	13.77	14.25	12.57	16.86	18.69	19.17	13.84	14.03	15.10	15.41	19.49	20.91	14.08	13.43	14.68	13.77	16.04	13.63	15.35	16.29	14.97	9.45	15.26	15.11	14.42	13.08	13.79	16.95	16.94	13.75	14.45	15.00	15.54	13.80	16.75	2.95	0.023744	0.405319
N	coord_cassette	SLC27A3	chr1	+	chr1:153751030-153751818	chr1:153751030-153751162;chr1:153751362-153751589;chr1:153751688-153751818		chr1:153751163-153751361;chr1:153751590-153751687			100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	94.12	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	100.00	0.00	0.363217	0.643829
N	cassette	AL136419.6,MDP1,NEDD8-MDP1	chr14	-	chr14:24683358-24683751;chr14:24683358-24683697	chr14:24683358-24683515;chr14:24683602-24683697,chr14:24683602-24683751		chr14:24683516-24683601			86.67	87.50	70.00	83.33	67.50	73.08	100.00	NA	87.50	NA	100.00	NA	95.45	100.00	91.67	NA	100.00	NA	69.09	75.00	78.05	NA	76.00	NA	70.00	90.91	81.48	80.00	70.00	NA	60.00	64.00	74.47	69.23	76.47	84.62	80.98	86.67	5.69	0.979337	0.995133
N	jcn_only_AD	SUMF2	chr7	+	chr7:56142446-56144526;chr7:56142333-56144526	chr7:56142430-56144526		chr7:56142333-56142429;chr7:56142430-56142445	chr7:56142332-56142333;chr7:56142429-56142430		100.00	98.70	100.00	94.12	97.96	100.00	98.12	95.65	98.21	95.51	98.08	94.17	97.55	100.00	97.78	98.78	99.03	96.10	96.00	97.14	100.00	94.83	95.29	98.61	95.83	96.15	98.51	94.59	95.31	95.92	95.35	95.92	93.02	95.71	94.51	97.04	96.78	96.65	-0.13	0.500209	0.739810
N	intron_retention		chr22	-	chr22:50965979-50966940				chr22:50965978-50965979;chr22:50966940-50966941		100.00	100.00	99.17	97.33	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	97.26	99.02	96.97	90.00	100.00	100.00	100.00	98.23	100.00	100.00	98.69	100.00	98.76	99.24	98.37	100.00	97.44	100.00	100.00	100.00	98.75	100.00	98.73	100.00	100.00	0.00	0.380320	1.000000
K	cassette	PIH1D1	chr19	-	chr19:49950357-49951083	chr19:49950357-49950594;chr19:49950678-49951083		chr19:49950595-49950677			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.49	100.00	96.23	NA	100.00	NA	96.10	100.00	100.00	NA	100.00	100.00	96.77	97.30	98.48	92.31	94.12	100.00	99.24	100.00	0.76	0.414373	0.727796
N	jcn_only_AA		chr6	+	chr6:30620495-30620686	chr6:30620495-30620578		chr6:30620579-30620686	chr6:30620686-30620687		100.00	100.00	100.00	NA	100.00	NA	100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.373901	0.663989
N	alternative_acceptor	ANKRD13D	chr11	+	chr11:67067595-67068460	chr11:67067595-67068219		chr11:67068220-67068460	chr11:67068460-67068461		3.19	6.96	6.47	0.00	7.38	NA	3.33	0.00	0.00	NA	3.23	NA	6.38	0.00	0.00	NA	5.00	NA	7.81	6.35	9.46	0.00	7.69	0.00	5.69	7.14	5.83	10.00	12.50	NA	5.41	7.41	6.10	0.00	6.58	0.00	6.24	4.30	-1.94	0.140064	0.638239
N	jcn_only_AD	BAG1	chr9	-	chr9:33262829-33264273;chr9:33262829-33265483;chr9:33262829-33264203	chr9:33262829-33264221		chr9:33264204-33264221;chr9:33264222-33264273;chr9:33264274-33265483	chr9:33264221-33264222;chr9:33264273-33264274;chr9:33265483-33265484		97.45	89.06	94.92	95.00	100.00	98.48	97.33	97.41	96.33	99.04	95.71	95.04	97.30	97.16	98.57	97.44	97.89	96.38	95.83	98.24	96.55	96.43	96.81	98.60	100.00	98.25	98.41	96.52	98.46	98.28	97.38	95.06	96.25	100.00	95.18	97.80	96.78	97.43	0.66	0.314579	0.657607
N	alternative_donor	PFKL	chr21	+	chr21:45739295-45739966	chr21:45739299-45739966		chr21:45739295-45739298	chr21:45739294-45739295		89.19	94.59	96.15	NA	100.00	NA	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	98.48	100.00	100.00	100.00	80.00	83.87	96.30	88.89	94.29	100.00	87.50	100.00	100.00	100.00	100.00	100.00	95.45	100.00	87.50	88.89	92.86	93.48	91.05	97.72	6.68	0.479047	0.738552
N	alternative_acceptor	CALM3,CIRBP	chr19	+	chr19:47111846-47112122;chr19:47111846-47112102	chr19:47111846-47112069		chr19:47112070-47112102;chr19:47112103-47112122	chr19:47112102-47112103;chr19:47112122-47112123		0.71	0.48	10.56	0.47	0.26	0.56	0.00	0.00	2.35	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.16	1.52	1.48	0.69	0.26	1.08	0.26	1.42	6.52	0.60	0.25	1.10	1.21	4.58	0.00	0.00	0.46	1.19	0.08	0.96	0.88	0.065646	0.584083
N	alternative_acceptor	SIGLEC9	chr19	+	chr19:51630554-51631205	chr19:51630554-51630823		chr19:51630824-51631205	chr19:51631205-51631206		1.96	1.37	1.33	0.00	0.91	6.25	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.72	0.00	0.00	0.00	2.78	0.00	2.27	3.03	3.33	5.00	0.00	1.64	1.82	1.94	2.56	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.785150	0.918040
N	cassette	TRPV2	chr17	+	chr17:16337013-16340102;chr17:16335615-16340102;chr17:16335165-16340102;chr17:16332297-16340102	chr17:16335165-16338203,chr17:16332297-16338203,chr17:16337013-16338203,chr17:16335615-16338203;chr17:16338284-16340102		chr17:16338204-16338283			93.41	100.00	100.00	93.65	93.60	96.05	98.53	99.23	97.92	96.43	96.51	98.39	100.00	97.63	100.00	96.30	97.01	95.74	98.76	97.65	97.76	95.12	100.00	95.35	100.00	100.00	92.16	95.77	96.00	96.04	93.04	98.08	96.41	97.40	97.40	97.39	99.38	97.64	-1.74	0.153555	0.709176
N	cassette	NUDT22	chr11	+	chr11:63995139-63996949;chr11:63994605-63996949	chr11:63995139-63996718,chr11:63994605-63996718;chr11:63996817-63996949		chr11:63996719-63996816			100.00	100.00	100.00	100.00	78.38	84.85	95.65	100.00	100.00	NA	100.00	NA	100.00	NA	88.89	NA	100.00	NA	95.83	100.00	92.59	NA	77.78	NA	85.71	100.00	92.11	NA	70.00	NA	100.00	96.15	86.67	NA	85.71	NA	95.74	100.00	4.26	0.067229	0.622875
K	alternative_acceptor	WDR45	chrX	-	chrX:48933323-48933524	chrX:48933413-48933524		chrX:48933323-48933412	chrX:48933322-48933323		95.45	100.00	94.74	100.00	88.89	100.00	92.86	91.11	86.49	88.89	93.55	80.00	100.00	93.02	100.00	100.00	91.67	93.75	88.89	94.44	91.43	100.00	97.06	93.33	100.00	97.22	92.86	94.44	96.67	87.10	98.08	93.75	96.15	96.55	88.46	93.75	98.08	94.94	-3.13	0.529399	0.811639
N	jcn_only_AD	GAA	chr17	+	chr17:78075725-78078353;chr17:78075679-78078353	chr17:78075690-78078353		chr17:78075679-78075689;chr17:78075690-78075724	chr17:78075678-78075679;chr17:78075689-78075690		87.88	100.00	94.59	NA	81.82	NA	94.57	95.12	93.02	97.01	95.83	94.83	92.00	97.83	92.00	93.88	94.74	93.18	NA	91.18	NA	92.86	95.95	92.45	100.00	93.62	89.74	97.22	91.89	100.00	92.86	96.30	100.00	96.43	100.00	93.44	100.00	93.24	-6.76	0.088393	0.632469
N	alternative_donor	FGD2	chr6	+	chr6:36993106-36993567;chr6:36990147-36993567	chr6:36992570-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		2.94	5.71	NA	NA	9.09	NA	2.50	2.72	0.00	0.00	4.76	0.00	3.08	2.67	1.75	4.35	2.70	3.51	10.00	4.17	NA	NA	3.57	2.33	7.14	1.46	NA	3.23	4.17	3.17	1.37	0.00	4.00	5.26	5.00	0.81	4.86	2.70	-2.16	0.057600	0.421157
N	alternative_acceptor	LEO1	chr15	-	chr15:52230483-52239488;chr15:52233796-52239488	chr15:52230458-52239488		chr15:52230458-52230482;chr15:52230483-52233795	chr15:52230457-52230458;chr15:52230482-52230483		95.24	100.00	97.30	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	95.83	98.39	100.00	92.59	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	0.00	0.701867	0.887511
K	intron_retention	XPC	chr3	-	chr3:14188880-14189407				chr3:14188879-14188880;chr3:14189407-14189408		3.12	0.00	5.33	NA	0.00	NA	0.00	0.00	2.04	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.12	2.00	0.00	10.34	7.14	0.00	9.68	4.11	0.00	0.00	NA	10.26	4.72	0.00	5.88	11.11	16.00	0.00	3.12	3.12	0.155811	1.000000
N	alternative_acceptor	EHBP1L1,LDHC	chr11	+	chr11:65351237-65351711	chr11:65351237-65351390		chr11:65351391-65351711	chr11:65351711-65351712		29.63	33.33	33.62	25.00	17.24	10.00	2.63	3.66	4.35	0.00	1.59	0.00	6.67	5.05	7.81	5.00	1.79	0.00	30.43	40.68	17.91	21.43	14.58	45.45	27.03	36.51	30.30	23.81	13.89	17.14	28.57	37.35	24.00	28.57	34.09	31.25	25.52	29.10	3.59	0.698140	0.886724
K	intron_retention	UPF1	chr19	+	chr19:18963881-18964060				chr19:18963880-18963881;chr19:18964060-18964061		7.41	14.29	15.15	NA	NA	NA	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	8.70	11.54	0.00	9.68	10.34	0.00	0.00	NA	10.00	8.00	NA	0.00	6.67	3.03	0.00	3.71	3.71	0.811276	1.000000
K	intron_retention	PPP6R1	chr19	-	chr19:55752760-55752844				chr19:55752759-55752760;chr19:55752844-55752845		2.94	15.38	3.03	NA	13.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	NA	4.88	5.56	14.81	0.00	1.72	5.26	5.88	0.00	0.00	3.70	0.00	5.26	12.90	0.00	1.19	0.00	-1.19	0.604724	1.000000
K	jcn_only_AD	NFKBIL1	chr6	+	chr6:31525582-31525798	chr6:31525627-31525798		chr6:31525582-31525626	chr6:31525581-31525582		40.00	68.29	66.67	60.00	72.73	73.33	72.73	NA	68.75	70.00	61.54	NA	64.71	81.25	70.00	71.43	73.33	NA	59.38	70.00	66.67	NA	66.67	NA	69.23	53.85	62.50	85.71	75.00	NA	73.33	52.38	75.00	54.55	72.73	73.33	68.76	70.00	1.24	0.585314	0.793233
K	intron_retention	RP11-44M6.7,SAP25	chr7	-	chr7:100170637-100170728				chr7:100170636-100170637;chr7:100170728-100170729		7.14	3.09	3.33	NA	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3.39	0.00	0.00	NA	7.69	NA	0.00	0.00	0.00	NA	NA	NA	5.00	4.26	1.85	NA	NA	NA	2.47	2.50	0.03	0.986211	1.000000
N	jcn_only_AA	E4F1	chr16	+	chr16:30012158-30012314	chr16:30012158-30012249		chr16:30012250-30012314	chr16:30012314-30012315		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.75	97.56	NA	95.45	91.30	100.00	100.00	100.00	NA	100.00	NA	96.30	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.573968	0.799750
N	alternative_donor	TACC1	chr8	+	chr8:38697786-38699804	chr8:38699008-38699804		chr8:38697786-38699007	chr8:38697785-38697786		4.17	0.00	1.89	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.88	NA	0.00	0.00	0.00	NA	3.12	4.17	NA	0.00	NA	0.00	5.00	0.00	0.00	0.00	0.00	0.00	1.56	1.56	0.089804	0.479204
N	alternative_acceptor	MICAL1	chr6	-	chr6:109767105-109767338;chr6:109767156-109767338;chr6:109767079-109767338	chr6:109767066-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		93.44	93.20	89.47	91.18	81.13	76.47	86.67	90.24	100.00	75.00	93.75	100.00	88.10	92.86	93.33	90.00	100.00	NA	85.71	89.47	85.48	91.30	85.00	100.00	88.68	91.03	85.37	72.73	90.00	89.47	86.27	85.71	85.96	86.49	85.71	90.00	87.38	90.63	3.25	0.138463	0.635210
K	intron_retention	CLCN7	chr16	-	chr16:1500668-1501623				chr16:1500667-1500668;chr16:1501623-1501624		3.51	5.56	5.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.06	0.00	2.86	0.00	0.00	0.00	0.00	6.06	3.57	0.00	1.27	0.00	6.90	2.22	1.89	3.33	3.39	0.00	5.41	3.28	0.00	1.89	2.74	3.03	1.03	2.87	1.84	0.520674	1.000000
K	intron_retention	STARD10	chr11	-	chr11:72466188-72466745				chr11:72466187-72466188;chr11:72466745-72466746		12.00	4.64	5.77	3.28	2.38	2.73	NA	NA	0.00	NA	NA	NA	NA	0.00	NA	0.00	0.00	NA	4.92	5.00	1.37	0.00	1.82	0.00	5.24	0.00	2.63	0.00	2.70	0.00	0.00	5.88	5.15	0.00	5.17	3.23	5.04	0.00	-5.04	0.806886	1.000000
K	alternative_donor	LSM1	chr8	-	chr8:38029552-38034070	chr8:38029552-38033792		chr8:38033793-38034070	chr8:38034070-38034071		100.00	100.00	96.67	90.91	95.24	NA	91.43	95.45	100.00	94.29	91.67	94.74	93.94	94.44	100.00	90.91	91.89	95.24	100.00	100.00	100.00	100.00	100.00	87.50	NA	100.00	96.30	100.00	96.00	91.30	100.00	96.97	91.67	100.00	90.62	100.00	93.94	100.00	6.06	0.232593	0.604501
N	alternative_donor	ARFGAP1	chr20	+	chr20:61912700-61914170	chr20:61913668-61914170		chr20:61912700-61913667	chr20:61912699-61912700		5.41	5.56	11.11	NA	0.00	NA	3.85	5.56	4.00	2.78	3.33	7.69	2.17	4.76	6.90	5.41	2.78	7.14	NA	4.00	0.00	14.29	6.25	18.18	21.43	4.35	6.25	9.09	10.00	4.35	5.00	5.45	4.55	8.33	11.76	10.00	4.55	4.88	0.33	0.492049	0.747116
K	intron_retention		chr22	-	chr22:29656603-29656690				chr22:29656602-29656603;chr22:29656690-29656691		8.33	5.41	16.00	0.00	10.87	12.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.77	0.00	7.84	13.33	9.52	7.69	5.88	4.76	8.00	0.00	4.65	4.35	9.09	8.16	12.50	5.00	7.69	6.06	5.64	2.38	-3.26	0.881599	1.000000
N	alternative_acceptor	FIG4	chr6	+	chr6:110107653-110110796	chr6:110107653-110110000		chr6:110110001-110110796	chr6:110110796-110110797		8.33	0.00	10.34	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	4.35	6.67	NA	0.00	NA	0.00	NA	6.25	NA	0.00	0.00	5.88	5.88	0.00	0.00	5.56	11.11	0.00	4.35	4.35	0.086754	0.586065
N	cassette	EMP3	chr19	+	chr19:48830180-48832608;chr19:48828868-48832608	chr19:48828868-48830777,chr19:48830180-48830777;chr19:48830922-48832608		chr19:48830778-48830921			98.13	95.65	97.66	96.79	96.68	95.37	98.66	99.57	100.00	98.93	97.81	98.70	99.04	100.00	100.00	98.86	99.13	99.24	94.94	98.58	96.79	97.49	98.04	98.70	89.34	97.90	95.73	97.12	98.97	97.74	98.10	93.12	88.30	97.94	98.29	98.11	95.30	98.35	3.06	0.065085	0.621473
K	intron_retention		chr12	-	chr12:57910964-57911051				chr12:57910963-57910964;chr12:57911051-57911052		17.11	27.59	29.31	30.19	28.30	12.50	0.00	0.00	0.00	5.56	0.00	0.00	0.00	3.17	1.43	5.88	0.00	NA	20.31	28.42	22.03	35.90	29.23	31.43	19.23	12.50	17.31	21.43	25.71	25.93	28.22	28.15	25.93	22.58	23.88	23.81	19.77	14.80	-4.96	0.913137	1.000000
N	jcn_only_AA	IFNAR2	chr21	+	chr21:34633033-34635116;chr21:34633033-34638316;chr21:34633033-34635097	chr21:34633033-34634865		chr21:34634866-34635097;chr21:34635098-34635116;chr21:34635117-34638316	chr21:34635097-34635098;chr21:34635116-34635117;chr21:34638316-34638317		46.67	100.00	27.27	100.00	95.59	97.78	38.46	40.70	28.93	30.99	36.05	35.29	55.95	38.46	31.96	57.53	34.55	42.70	100.00	35.00	94.74	58.82	60.81	35.85	100.00	30.61	37.10	72.73	73.91	80.65	52.17	52.00	97.67	66.67	46.03	47.31	98.84	39.58	-59.26	0.012870	0.486024
K	alternative_donor	IKBKB	chr8	+	chr8:42176194-42176787	chr8:42176383-42176787		chr8:42176194-42176382	chr8:42176193-42176194		0.00	10.34	7.41	NA	NA	NA	0.00	0.00	3.70	0.00	3.33	0.00	1.72	0.00	0.00	0.00	2.86	NA	NA	6.67	NA	8.33	4.00	0.00	0.00	0.00	4.17	7.14	5.88	0.00	NA	8.70	NA	5.56	3.57	8.00	0.86	0.00	-0.86	0.577574	0.799662
K	alternative_acceptor	RNH1	chr11	-	chr11:502182-504823	chr11:502250-504823		chr11:502182-502249	chr11:502181-502182		78.57	77.59	81.82	75.00	76.12	NA	66.67	79.41	87.50	59.00	55.94	59.34	58.45	78.69	74.07	62.42	56.46	60.00	NA	54.55	68.42	58.06	44.58	43.59	77.42	73.68	80.00	65.43	63.64	64.52	74.07	84.21	74.07	65.96	67.62	68.42	74.07	76.32	2.25	0.673325	0.880186
K	jcn_only_AD	UBE2D3	chr4	-	chr4:103747794-103748748;chr4:103747794-103748891;chr4:103747794-103748583	chr4:103747794-103749100		chr4:103748584-103748748;chr4:103748749-103748891;chr4:103748892-103749100	chr4:103748748-103748749;chr4:103748891-103748892;chr4:103749100-103749101		16.67	0.00	16.24	0.00	6.67	18.18	6.89	17.95	16.97	21.79	13.24	31.58	8.23	19.94	18.55	14.86	12.26	26.28	0.00	13.27	17.86	12.31	6.49	15.11	NA	18.42	17.58	8.91	5.05	12.12	14.86	16.81	NA	20.00	12.77	15.81	3.44	17.31	13.87	0.004712	0.177805
K	intron_retention	SUN2	chr22	-	chr22:39134271-39134591				chr22:39134270-39134271;chr22:39134591-39134592		6.67	0.00	2.40	NA	0.00	NA	0.00	3.26	1.32	0.00	0.00	10.00	0.00	4.63	12.16	2.44	0.69	8.16	0.00	7.06	0.00	5.88	1.64	26.19	0.00	14.44	2.86	6.67	2.22	50.00	8.11	6.25	0.00	7.55	3.33	31.43	0.00	6.87	6.87	0.016259	1.000000
K	cassette	ETFA	chr15	-	chr15:76566836-76577977	chr15:76566836-76576097;chr15:76576167-76577977		chr15:76576098-76576166			96.36	100.00	95.52	97.37	96.97	100.00	97.22	100.00	96.61	97.26	98.89	98.63	98.17	94.74	95.52	98.85	99.04	96.49	100.00	97.37	98.15	98.04	97.98	98.18	100.00	100.00	94.83	97.67	98.80	97.87	100.00	94.64	98.41	98.81	97.83	96.84	99.20	98.69	-0.52	0.422034	0.730076
N	cassette	SAP30BP	chr17	+	chr17:73698652-73700835;chr17:73699452-73700835	chr17:73699452-73699887,chr17:73698652-73699887;chr17:73699940-73700835		chr17:73699888-73699939			100.00	95.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	100.00	98.63	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	96.47	98.86	91.94	98.94	100.00	98.44	100.00	100.00	0.00	0.525737	0.802149
K	cassette	TNK2	chr3	-	chr3:195593888-195594231	chr3:195593888-195594039;chr3:195594136-195594231		chr3:195594040-195594135			94.25	90.28	86.36	NA	84.00	NA	100.00	95.24	89.66	NA	93.33	NA	94.12	95.24	96.55	NA	100.00	NA	91.67	88.33	87.50	NA	70.59	NA	76.09	97.33	90.48	NA	86.96	81.82	90.57	89.29	87.10	81.82	76.92	90.91	90.97	94.75	3.77	0.343746	0.709176
N	intron_retention		chr1	+	chr1:182798630-182798737				chr1:182798629-182798630;chr1:182798737-182798738		95.86	95.34	93.72	89.83	97.10	90.62	100.00	96.72	100.00	100.00	98.12	100.00	100.00	97.92	100.00	100.00	100.00	100.00	95.04	91.74	95.65	96.33	95.50	96.04	100.00	91.26	97.78	97.44	97.67	97.85	92.13	94.01	91.18	95.61	96.36	96.51	97.67	94.00	-3.67	0.482207	1.000000
N	cassette	ARPC1B	chr7	+	chr7:98972405-98983324;chr7:98974198-98983324	chr7:98972405-98974960,chr7:98974198-98974960;chr7:98975079-98983324		chr7:98974961-98975078			4.60	5.19	6.75	2.99	5.74	6.25	5.80	5.44	7.12	5.13	4.53	4.42	4.71	4.64	6.07	5.75	4.93	5.33	2.19	1.48	3.60	2.90	2.93	4.76	7.94	4.55	4.17	3.88	4.79	7.14	2.99	2.66	2.81	3.33	4.21	4.59	4.95	4.57	-0.38	0.448036	0.750082
N	jcn_only_AA	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075931-100076416	chr7:100075828-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		8.93	0.00	9.09	NA	13.04	NA	10.29	16.04	20.00	20.93	21.05	12.82	5.97	19.79	17.14	12.96	12.31	12.24	0.00	4.00	12.50	10.00	9.38	0.00	NA	9.09	6.98	16.67	8.82	0.00	0.00	9.76	0.00	7.14	0.00	7.50	0.00	9.01	9.01	0.116815	0.663989
K	alternative_acceptor	ZBTB17	chr1	-	chr1:16268916-16269023	chr1:16268937-16269023		chr1:16268916-16268936	chr1:16268915-16268916		1.85	8.16	5.97	8.08	8.00	6.22	0.00	5.88	1.82	5.88	8.70	2.63	5.26	7.69	5.56	4.88	0.00	4.17	0.00	8.51	4.67	5.66	5.41	4.35	0.00	4.26	5.00	3.77	0.00	3.70	4.35	5.95	11.43	4.88	5.56	4.40	2.63	5.12	2.49	0.586260	0.843374
K	alternative_donor	KXD1	chr19	+	chr19:18679490-18679639	chr19:18679500-18679639		chr19:18679490-18679499	chr19:18679489-18679490		89.19	90.48	90.91	82.14	83.64	80.00	85.00	90.00	88.57	76.67	89.19	85.71	84.78	82.61	91.89	77.50	85.37	86.67	82.50	90.91	91.84	100.00	87.93	96.43	100.00	88.57	92.31	90.00	84.78	81.25	89.36	94.64	82.05	80.00	91.49	87.23	84.89	89.28	4.39	0.758895	0.902356
N	cassette	ATG4B	chr2	+	chr2:242606254-242607954	chr2:242606254-242607557;chr2:242607637-242607954		chr2:242607558-242607636			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	95.12	94.12	95.24	100.00	100.00	100.00	100.00	100.00	0.00	0.986302	0.996694
K	intron_retention	RAB11A	chr15	+	chr15:66169706-66170149				chr15:66169705-66169706;chr15:66170149-66170150		93.75	100.00	90.48	95.00	93.55	95.00	93.55	87.82	83.56	94.00	95.16	90.91	92.54	85.40	88.41	85.48	95.08	94.12	100.00	94.74	98.00	94.12	96.00	94.87	NA	90.43	87.72	96.00	95.12	96.08	93.75	100.00	100.00	95.35	95.35	90.32	100.00	92.09	-7.91	0.143216	1.000000
K	intron_retention		chr19	+	chr19:14070882-14071098				chr19:14070881-14070882;chr19:14071098-14071099		11.29	13.56	11.76	8.33	11.76	NA	2.63	0.00	0.00	0.00	2.38	0.00	5.00	0.00	8.11	8.33	4.76	0.00	12.00	10.53	6.90	15.38	14.89	20.00	12.50	7.35	10.87	5.26	13.33	0.00	10.00	12.50	13.64	7.89	10.00	11.54	12.25	8.68	-3.57	0.850673	1.000000
N	jcn_only_AA	TBC1D2	chr9	-	chr9:100982536-100983114;chr9:100979480-100983114	chr9:100975501-100983114		chr9:100975501-100979479;chr9:100979480-100982535	chr9:100975500-100975501;chr9:100979479-100979480		100.00	100.00	100.00	NA	100.00	NA	98.84	100.00	100.00	100.00	98.99	NA	100.00	90.00	100.00	100.00	100.00	NA	NA	95.45	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.89	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.252349	0.663989
K	alternative_last_exon	LFNG,VPS50	chr7	+	chr7:2566556-2577993,chr7:2566556-2586474;chr7:2566556-2568507	chr7:2566556-2566779	chr7:2568508-2568811	chr7:2566780-2568063			97.37	92.31	94.44	93.33	97.95	NA	98.48	97.14	100.00	97.14	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	93.33	96.97	96.83	100.00	96.12	NA	93.33	100.00	93.75	100.00	98.18	NA	94.44	96.30	91.23	97.30	96.43	100.00	93.33	97.25	3.92	0.076314	0.281549
K	intron_retention		chr8	-	chr8:145158129-145158455				chr8:145158128-145158129;chr8:145158455-145158456		13.33	4.17	9.09	NA	10.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.67	4.55	0.00	0.00	0.00	0.00	10.00	4.76	NA	NA	0.00	5.26	0.00	0.00	NA	0.00	13.64	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.601311	1.000000
N	jcn_only_AA	VAC14	chr16	-	chr16:70721992-70726723;chr16:70725953-70726723;chr16:70721988-70726723;chr16:70725990-70726723	chr16:70721994-70726723		chr16:70721988-70721991;chr16:70721992-70721993;chr16:70721994-70725952;chr16:70725953-70725989	chr16:70721987-70721988;chr16:70721991-70721992;chr16:70721993-70721994;chr16:70725952-70725953		100.00	100.00	100.00	100.00	100.00	98.84	92.94	91.67	98.00	85.58	90.08	87.10	94.81	100.00	100.00	93.51	90.53	91.89	100.00	94.74	100.00	100.00	100.00	100.00	100.00	98.41	98.41	100.00	98.95	97.01	95.74	100.00	100.00	95.56	100.00	90.38	100.00	97.07	-2.93	0.539094	0.776909
N	alternative_acceptor		chr16	+	chr16:21987565-21991243;chr16:21987565-21990203	chr16:21987565-21991867		chr16:21990204-21991243;chr16:21991244-21991867	chr16:21991243-21991244;chr16:21991867-21991868		92.31	96.27	87.88	96.47	93.99	96.88	99.57	98.08	99.01	99.04	98.92	99.47	98.26	98.25	97.20	98.12	98.26	99.32	94.89	88.71	95.74	88.46	89.69	88.30	97.00	88.24	89.92	93.48	92.61	91.82	90.74	89.90	96.06	91.62	91.57	90.91	96.63	91.53	-5.11	0.067142	0.584083
N	jcn_only_AA	KIAA0196	chr8	-	chr8:126051202-126052036	chr8:126051219-126052036		chr8:126051202-126051218	chr8:126051201-126051202		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	NA	NA	8.33	0.00	0.00	0.00	0.00	NA	5.88	3.23	NA	0.00	NA	9.52	2.50	0.00	0.00	2.08	0.00	0.00	2.94	2.94	0.133620	0.663989
K	jcn_only_AD	RNF220	chr1	+	chr1:45097885-45098014;chr1:45092071-45098014	chr1:45097881-45098014		chr1:45092071-45097880;chr1:45097881-45097884	chr1:45092070-45092071;chr1:45097880-45097881		58.33	90.32	54.55	NA	40.00	NA	65.57	73.68	54.29	60.00	65.12	69.23	64.15	63.16	64.71	63.83	66.67	60.00	60.00	60.00	60.00	50.00	60.00	54.55	58.33	NA	61.11	50.00	70.00	NA	NA	57.89	54.55	50.00	62.50	41.67	62.08	61.58	-0.50	0.793652	0.902717
K	intron_retention	RP11-810M2.2	chr17	+	chr17:4067668-4067959				chr17:4067667-4067668;chr17:4067959-4067960		100.00	100.00	100.00	NA	92.86	100.00	100.00	93.48	100.00	100.00	93.10	100.00	97.37	89.74	100.00	95.00	93.33	100.00	88.89	100.00	95.65	92.31	100.00	100.00	100.00	100.00	100.00	92.68	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.993922	1.000000
N	alternative_donor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24681036-24681971;chr14:24681036-24681756;chr14:24681036-24682229;chr14:24681036-24682614	chr14:24681036-24683199		chr14:24681757-24681971;chr14:24681972-24682229;chr14:24682230-24682614;chr14:24682615-24683199	chr14:24681971-24681972;chr14:24682229-24682230;chr14:24682614-24682615;chr14:24683199-24683200		0.00	0.00	5.26	NA	0.00	NA	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	7.14	0.00	5.88	NA	8.70	NA	NA	7.69	0.00	0.00	9.09	0.00	0.00	11.11	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.940958	0.984606
N	cassette	XAB2	chr19	-	chr19:7688176-7689186	chr19:7688176-7688616;chr19:7688769-7689186		chr19:7688617-7688768			89.66	81.82	94.12	NA	84.21	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.24	92.31	100.00	90.48	100.00	100.00	100.00	0.00	0.480797	0.772079
N	jcn_only_AD	RAE1	chr20	+	chr20:55951323-55953068;chr20:55950127-55953068	chr20:55949858-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		100.00	71.79	100.00	100.00	96.36	100.00	100.00	NA	100.00	96.88	100.00	100.00	92.31	90.91	100.00	97.06	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	91.23	100.00	100.00	100.00	91.99	100.00	8.01	0.171936	0.657607
N	jcn_only_AA	CD300C	chr17	-	chr17:72537876-72538999;chr17:72536662-72538999	chr17:72534063-72538999		chr17:72534063-72536661;chr17:72536662-72537875	chr17:72534062-72534063;chr17:72536661-72536662		0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	2.63	0.00	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.00	8.12	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	7.32	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161962050-161967614;chr1:161954771-161967614;chr1:161966285-161967614	chr1:161948463-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	coord_cassette	ADRM1	chr20	+	chr20:60878106-60881252	chr20:60878106-60878623;chr20:60878838-60879516;chr20:60879634-60881252		chr20:60878624-60878837;chr20:60879517-60879633			93.69	96.61	94.07	100.00	100.00	90.16	96.94	97.78	100.00	99.12	98.77	100.00	100.00	100.00	100.00	98.39	98.29	100.00	100.00	91.74	95.33	95.17	100.00	92.37	100.00	96.92	96.77	97.48	97.76	98.50	88.89	92.52	100.00	97.71	100.00	93.17	100.00	95.31	-4.69	0.062396	0.643829
N	cassette	MFSD12	chr19	-	chr19:3544731-3547269;chr19:3544938-3547269;chr19:3538755-3547269	chr19:3544938-3546071,chr19:3544731-3546071,chr19:3538755-3546071;chr19:3546167-3547269		chr19:3546072-3546166			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	99.12	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.216623	0.709176
K	intron_retention	MAP7D1	chr1	+	chr1:36644917-36645115				chr1:36644916-36644917;chr1:36645115-36645116		1.36	3.51	0.84	1.08	1.24	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.00	3.20	1.21	1.19	1.75	1.28	2.20	1.98	1.26	1.31	0.57	0.00	0.74	3.93	3.50	7.48	1.46	1.92	1.20	2.59	1.23	-1.35	0.577101	1.000000
K	cassette	ZNF385A	chr12	-	chr12:54767920-54778211	chr12:54767920-54769627;chr12:54769739-54778211		chr12:54769628-54769738			97.56	100.00	94.29	NA	100.00	NA	98.69	97.58	100.00	96.97	97.74	100.00	97.64	97.30	94.87	100.00	97.26	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	91.30	96.15	94.44	100.00	100.00	NA	100.00	100.00	98.31	99.34	98.79	-0.56	0.681973	0.883836
K	intron_retention	SF1	chr11	-	chr11:64534724-64535042				chr11:64534723-64534724;chr11:64535042-64535043		7.89	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.27	0.00	0.00	0.00	4.17	5.45	0.00	2.00	2.04	0.00	0.00	0.00	0.00	0.480371	1.000000
K	jcn_only_AA	NSMCE1	chr16	-	chr16:27238155-27244321	chr16:27238158-27244321		chr16:27238155-27238157	chr16:27238154-27238155		100.00	95.04	96.61	94.12	97.44	94.74	96.23	100.00	93.48	100.00	96.15	93.33	98.00	100.00	100.00	100.00	95.74	100.00	92.19	96.15	97.39	91.67	93.33	81.25	93.18	NA	95.77	91.30	100.00	95.45	84.85	88.52	96.12	100.00	92.68	92.86	95.58	100.00	4.42	0.740987	0.884263
N	cassette	BRD7	chr16	-	chr16:50359795-50362579	chr16:50359795-50360194;chr16:50360303-50362579		chr16:50360195-50360302			93.75	100.00	90.57	NA	78.95	NA	90.91	100.00	100.00	93.10	88.37	100.00	94.74	92.59	100.00	88.57	89.19	86.36	90.91	95.12	88.46	83.33	93.33	89.66	NA	100.00	93.18	90.48	100.00	91.67	100.00	94.59	NA	100.00	88.57	92.31	92.82	97.56	4.74	0.327115	0.709176
N	alternative_donor	DICER1	chr14	-	chr14:95557703-95560224	chr14:95557703-95558905		chr14:95558906-95560224	chr14:95560224-95560225		4.55	0.00	3.57	0.00	NA	0.00	0.00	0.84	0.65	0.96	0.00	1.67	0.00	0.98	1.20	1.92	0.00	2.70	NA	3.23	0.00	0.00	0.00	10.00	0.00	1.39	1.92	0.00	0.00	1.15	0.00	0.00	NA	3.33	3.12	3.95	0.00	1.19	1.19	0.046798	0.384924
K	cassette	LTA4H	chr12	-	chr12:96396843-96400091	chr12:96396843-96397615;chr12:96397699-96400091		chr12:96397616-96397698			66.67	74.49	80.47	76.74	72.89	68.75	84.39	NA	76.19	61.00	70.53	67.68	78.67	NA	80.00	72.73	66.10	68.18	76.03	71.88	79.38	80.49	80.81	76.04	85.33	71.43	84.56	75.86	76.92	72.34	80.77	89.36	79.65	71.62	80.73	76.54	79.16	71.66	-7.50	0.092779	0.658231
N	jcn_only_AA	EIF3M	chr11	+	chr11:32605476-32611097;chr11:32605476-32608527;chr11:32605476-32608557;chr11:32605476-32608479	chr11:32605476-32608591		chr11:32608480-32608527;chr11:32608528-32608557;chr11:32608558-32608591;chr11:32608592-32611097	chr11:32608527-32608528;chr11:32608557-32608558;chr11:32608591-32608592;chr11:32611097-32611098		2.86	0.00	0.00	0.00	0.00	NA	0.00	5.00	3.96	2.29	0.00	0.00	2.99	0.00	0.00	0.00	0.00	5.56	0.00	3.03	0.00	0.84	1.71	2.65	NA	0.00	1.64	0.00	2.06	0.00	0.00	0.00	0.00	0.00	0.00	3.41	0.00	1.43	1.43	0.279690	0.663989
K	alternative_acceptor	EML3	chr11	-	chr11:62370252-62370620	chr11:62370362-62370620		chr11:62370252-62370361	chr11:62370251-62370252		93.33	95.16	90.32	89.47	96.88	96.00	92.31	NA	100.00	NA	NA	NA	81.25	NA	83.33	NA	NA	NA	95.00	100.00	91.89	NA	96.00	100.00	95.45	100.00	92.31	82.35	91.30	92.31	93.33	100.00	91.49	94.44	100.00	95.45	93.66	96.66	3.01	0.134431	0.630752
N	alternative_acceptor	HNRNPUL1	chr19	+	chr19:41810167-41811736;chr19:41810167-41811532;chr19:41810167-41811550	chr19:41810167-41811580		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		75.00	53.85	80.39	NA	66.67	NA	90.16	67.74	79.31	74.14	74.16	75.00	81.11	88.89	88.89	78.26	79.63	92.59	66.67	94.29	66.67	93.75	90.24	93.33	NA	76.32	93.33	94.44	74.42	85.71	73.53	75.93	58.33	82.61	88.57	80.95	66.67	75.66	8.99	0.285763	0.709013
K	cassette	ARAP1	chr11	-	chr11:72399583-72404369	chr11:72399583-72403797;chr11:72403831-72404369		chr11:72403798-72403830			8.18	16.12	8.43	17.05	9.19	9.43	21.35	26.37	29.36	26.79	28.26	44.12	17.95	20.41	29.68	24.79	23.61	35.71	13.08	9.84	22.57	15.85	13.66	13.46	6.04	20.67	10.67	18.97	10.56	17.43	13.58	11.11	14.69	14.56	13.16	18.18	15.41	17.00	1.59	0.659013	0.874582
K	intron_retention		chr20	-	chr20:3680107-3681988				chr20:3680106-3680107;chr20:3681988-3681989		4.08	31.82	0.00	NA	NA	NA	0.46	1.11	0.18	0.00	0.65	0.69	1.31	0.39	0.99	0.00	0.00	0.74	NA	2.35	NA	0.00	0.00	1.96	21.43	3.23	1.79	11.11	4.35	7.50	3.33	3.45	NA	9.38	0.00	8.05	11.37	2.79	-8.58	0.462696	1.000000
N	jcn_only_AA	RHOC	chr1	-	chr1:113247824-113249699;chr1:113248875-113249699;chr1:113247819-113249699;chr1:113247791-113249699	chr1:113247746-113249699		chr1:113247746-113247790;chr1:113247791-113247818;chr1:113247819-113247823;chr1:113247824-113248874	chr1:113247745-113247746;chr1:113247790-113247791;chr1:113247818-113247819;chr1:113247823-113247824		0.00	8.33	0.00	2.78	5.00	7.41	1.61	3.80	4.76	4.96	5.56	7.69	7.06	4.19	5.97	3.91	7.41	8.75	10.00	0.00	2.17	1.43	0.00	4.30	0.00	1.14	2.94	2.86	2.38	2.33	3.45	0.00	0.00	0.00	0.00	2.11	4.33	2.29	-2.04	0.268041	0.663989
N	intron_retention		chr20	+	chr20:61444655-61444714				chr20:61444654-61444655;chr20:61444714-61444715		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	79.35	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	cassette	DNTTIP2	chr1	-	chr1:94338771-94341823	chr1:94338771-94341200;chr1:94341340-94341823		chr1:94341201-94341339			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.13	96.43	100.00	99.30	100.00	96.51	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SUPT7L	chr2	-	chr2:27878470-27880211				chr2:27878469-27878470;chr2:27880211-27880212		7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	6.06	1.92	0.00	5.00	4.26	3.77	0.00	1.11	1.11	0.240632	1.000000
N	alternative_acceptor		chr19	.	chr19:59061403-59061564;chr19:59061403-59061494	chr19:59061403-59061513		chr19:59061495-59061513;chr19:59061514-59061564	chr19:59061513-59061514;chr19:59061564-59061565		96.10	98.17	97.39	96.30	97.71	98.09	100.00	100.00	100.00	100.00	99.10	99.05	99.24	100.00	100.00	100.00	99.15	100.00	97.41	95.24	96.67	95.52	96.64	96.23	97.89	97.37	97.62	96.67	95.69	96.47	91.46	95.12	95.99	98.33	97.30	97.18	98.03	96.73	-1.30	0.356666	0.709013
K	cassette	SFSWAP	chr12	+	chr12:132241190-132250662	chr12:132241190-132249000;chr12:132249232-132250662		chr12:132249001-132249231			100.00	70.83	87.50	NA	100.00	NA	88.24	NA	87.50	95.00	82.35	NA	84.21	NA	88.24	75.00	90.91	100.00	NA	76.92	85.71	92.86	96.88	94.12	NA	84.62	100.00	87.50	86.36	82.35	81.82	90.48	81.82	88.89	100.00	82.61	83.01	83.22	0.21	0.492779	0.776782
K	intron_retention	ATXN2L	chr16	+	chr16:28847080-28847253				chr16:28847079-28847080;chr16:28847253-28847254		0.00	0.00	5.08	0.00	2.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	1.69	0.00	0.00	0.00	8.82	2.70	3.33	7.27	5.00	0.00	2.70	0.00	2.70	2.08	0.00	12.82	5.88	11.76	7.32	2.13	5.88	0.00	1.35	1.35	0.700411	1.000000
N	jcn_only_AA		chr16	+	chr16:30783295-30783393;chr16:30783295-30783389	chr16:30783295-30783409		chr16:30783390-30783393;chr16:30783394-30783409	chr16:30783393-30783394;chr16:30783409-30783410		100.00	100.00	100.00	NA	96.00	NA	100.00	100.00	100.00	94.12	100.00	100.00	100.00	97.56	98.15	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	98.86	100.00	100.00	98.00	97.62	100.00	100.00	0.00	0.177298	0.663989
K	alternative_first_exon	NADK	chr1	-	chr1:1696886-1710184;chr1:1696886-1709727	chr1:1696886-1711343	chr1:1710185-1710229;chr1:1709728-1709909	chr1:1711344-1711508			95.70	76.92	96.15	NA	NA	NA	93.10	100.00	100.00	70.59	78.12	95.83	86.30	100.00	98.35	57.14	52.38	92.86	NA	97.50	81.82	NA	76.00	91.67	90.91	100.00	97.22	76.47	84.62	96.15	100.00	98.18	NA	73.91	78.95	90.48	88.60	100.00	11.40	0.040722	0.151012
N	alternative_acceptor	NMRK1	chr9	-	chr9:77681788-77683911;chr9:77681757-77683911	chr9:77682586-77683911		chr9:77681757-77681787;chr9:77681788-77682585	chr9:77681756-77681757;chr9:77681787-77681788		2.38	0.00	5.80	0.00	0.00	0.00	0.00	1.96	1.92	0.00	0.00	0.00	3.85	2.13	4.55	NA	7.69	10.00	0.00	3.33	1.39	9.09	2.33	5.88	0.00	6.41	4.90	6.25	6.12	5.56	5.45	5.06	3.33	4.35	7.41	9.38	0.00	2.85	2.85	0.049614	0.570243
N	alternative_first_exon	METRNL	chr17	+	chr17:81047817-81050911,chr17:81050314-81050911,chr17:81049679-81050911,chr17:81047662-81050911;chr17:81037862-81050911	chr17:81043200-81050911	chr17:81037567-81037861	chr17:81041949-81043199			100.00	96.67	97.78	100.00	100.00	100.00	100.00	98.15	100.00	95.41	97.18	93.81	100.00	100.00	100.00	88.89	94.59	82.46	100.00	100.00	100.00	100.00	96.47	93.55	100.00	100.00	100.00	95.38	96.00	95.12	100.00	97.22	100.00	97.06	100.00	96.55	100.00	100.00	0.00	0.708001	0.794270
K	alternative_last_exon	GABARAPL2	chr16	+	chr16:75600806-75611176	chr16:75600806-75601934	chr16:75611177-75611779	chr16:75601935-75602303			97.47	98.28	99.19	96.00	98.08	82.35	100.00	98.70	100.00	98.00	95.38	97.73	100.00	98.73	98.77	100.00	98.46	97.50	91.30	98.28	98.18	97.67	96.59	100.00	NA	98.41	97.89	100.00	98.65	98.00	98.00	98.88	91.67	100.00	100.00	97.53	98.28	98.34	0.06	0.365551	0.535374
N	alternative_acceptor	IRF8	chr16	+	chr16:85942780-85943089;chr16:85942780-85945175	chr16:85942780-85943092		chr16:85943090-85943092;chr16:85943093-85945175	chr16:85943092-85943093;chr16:85945175-85945176		5.17	10.53	7.89	NA	NA	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.38	NA	1.75	3.17	0.37	NA	2.17	3.70	0.00	0.00	0.00	4.88	3.45	10.00	6.35	1.32	0.74	5.47	3.52	-1.94	0.499207	0.791230
K	alternative_acceptor	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10943667;chr19:10941055-10942979	chr19:10941055-10941653		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		74.40	69.54	73.83	73.13	67.54	83.78	67.21	73.77	75.93	64.10	66.13	72.00	77.22	73.53	74.58	67.31	73.85	72.73	80.00	73.21	78.01	80.77	77.50	81.58	65.35	75.58	73.11	68.63	72.15	86.84	74.51	71.67	80.95	69.74	74.24	76.62	73.38	74.09	0.71	0.789940	0.922326
N	intron_retention		chr14	+	chr14:57756175-57756660				chr14:57756174-57756175;chr14:57756660-57756661		100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.00	94.87	NA	100.00	NA	100.00	100.00	96.43	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	alternative_first_exon	PPP2R4	chr9	+	chr9:131904362-131904723;chr9:131899972-131904723;chr9:131904198-131904723;chr9:131902431-131904723	chr9:131901929-131904723	chr9:131904233-131904361;chr9:131899871-131899971;chr9:131903925-131904197;chr9:131902287-131902430	chr9:131901661-131901928			1.08	8.70	4.84	NA	20.83	NA	9.09	0.60	3.51	8.57	15.31	4.65	8.65	0.00	1.82	7.89	10.28	3.23	NA	1.04	3.45	0.00	11.76	0.00	12.50	0.00	2.63	0.00	6.52	0.00	0.00	0.00	0.00	4.35	8.57	6.12	8.70	0.30	-8.40	0.023708	0.111055
K	intron_retention		chr2	-	chr2:219130406-219130553				chr2:219130405-219130406;chr2:219130553-219130554		8.33	12.94	20.00	13.64	12.77	NA	0.00	2.27	2.08	2.38	2.08	0.00	2.67	0.00	0.00	0.00	3.39	6.25	6.06	8.51	12.24	16.00	15.38	25.00	0.00	10.87	13.70	0.00	13.51	11.76	21.95	22.78	16.13	13.51	12.24	6.38	4.37	8.42	4.05	0.925966	1.000000
N	alternative_donor	MAP7D1	chr1	+	chr1:36627088-36636571;chr1:36621335-36636571	chr1:36622065-36636571		chr1:36621335-36622064;chr1:36622065-36627087	chr1:36621334-36621335;chr1:36622064-36622065		100.00	93.33	98.25	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	97.96	100.00	100.00	100.00	NA	100.00	100.00	NA	97.22	96.67	97.56	100.00	100.00	0.00	0.488200	0.745750
N	alternative_donor	NEAT1	chr11	+	chr11:65190684-65190765	chr11:65190691-65190765		chr11:65190684-65190690	chr11:65190683-65190684		100.00	100.00	100.00	NA	NA	NA	91.67	100.00	95.65	100.00	100.00	100.00	100.00	94.59	100.00	100.00	94.44	NA	100.00	97.26	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.876758	0.969355
K	intron_retention	ADAP2	chr17	+	chr17:29283488-29284852				chr17:29283487-29283488;chr17:29284852-29284853		5.77	7.14	9.38	NA	4.05	NA	2.44	1.75	1.04	0.00	1.52	5.00	1.75	0.60	1.06	4.62	0.58	0.00	27.27	4.58	0.00	9.09	5.49	0.00	17.65	3.68	1.89	8.00	4.11	15.38	5.97	7.14	15.38	8.33	5.07	5.26	11.26	4.13	-7.13	0.415641	1.000000
K	intron_retention	HECTD1	chr14	-	chr14:31570274-31570385				chr14:31570273-31570274;chr14:31570385-31570386		2.44	0.00	1.64	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.03	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	8.33	2.56	0.00	0.00	0.00	0.00	0.00	1.22	1.22	0.326609	1.000000
N	cassette	EFHD2	chr1	+	chr1:15752515-15755088	chr1:15752515-15753645;chr1:15753781-15755088		chr1:15753646-15753780			87.02	90.70	90.16	88.35	90.36	93.41	95.89	95.61	98.67	94.86	95.78	98.48	97.67	96.81	98.94	97.58	97.22	97.73	94.38	92.65	92.82	90.11	90.02	93.30	93.63	96.67	91.78	90.73	94.16	96.48	92.17	90.23	88.87	87.21	89.17	93.36	94.00	94.13	0.12	0.986561	0.996694
N	alternative_last_exon		chr16	+	chr16:30958270-30958352;chr16:30958270-30967520	chr16:30958270-30958372	chr16:30967521-30967782	chr16:30958373-30960104			100.00	100.00	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.535374
N	cassette	ODF3B	chr22	-	chr22:50968990-50969365	chr22:50968990-50969140;chr22:50969258-50969365		chr22:50969141-50969257			100.00	100.00	100.00	100.00	90.91	94.12	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	90.00	NA	NA	100.00	100.00	100.00	0.00	0.373901	0.709176
N	cassette	CD36	chr7	+	chr7:80302160-80303298	chr7:80302160-80302670;chr7:80302726-80303298		chr7:80302671-80302725			100.00	94.38	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	99.59	100.00	98.16	100.00	100.00	100.00	99.16	100.00	99.33	100.00	98.39	100.00	99.37	100.00	100.00	100.00	99.45	100.00	100.00	99.14	99.39	100.00	0.61	0.160612	0.709176
K	alternative_last_exon	NRP1	chr10	-	chr10:33491915-33496499;chr10:33495282-33496499;chr10:33486638-33496499	chr10:33491924-33496499	chr10:33494377-33495281;chr10:33486549-33486637	chr10:33489946-33491923			85.71	70.27	75.00	66.67	66.67	73.08	70.21	66.67	NA	77.27	82.61	75.00	79.66	81.82	NA	76.00	75.41	72.00	64.86	75.00	66.67	70.00	69.23	81.82	85.00	NA	90.91	70.59	61.90	64.29	NA	NA	77.78	69.23	64.29	72.73	74.03	78.41	4.38	0.623695	0.760703
K	coord_cassette	GRHPR	chr9	+	chr9:37422831-37428480	chr9:37422831-37424841;chr9:37424973-37425918;chr9:37425992-37426534;chr9:37426652-37428480		chr9:37424842-37424972;chr9:37425919-37425991;chr9:37426535-37426651			94.44	91.67	100.00	100.00	97.14	100.00	98.48	100.00	100.00	93.02	100.00	93.75	100.00	100.00	100.00	100.00	98.44	100.00	100.00	NA	100.00	100.00	88.37	91.67	100.00	100.00	92.59	100.00	95.35	100.00	NA	100.00	94.12	100.00	93.55	100.00	99.24	100.00	0.76	0.560519	0.748909
K	intron_retention	CHTOP	chr1	+	chr1:153610925-153614721				chr1:153610924-153610925;chr1:153614721-153614722		8.33	0.00	17.14	0.00	0.00	NA	0.00	4.76	0.00	0.00	0.00	0.00	3.33	4.00	5.00	4.55	0.00	0.00	0.00	6.90	0.00	11.76	3.33	6.25	NA	13.33	4.55	0.00	3.57	0.00	0.00	4.88	0.00	11.54	13.33	12.50	0.00	5.83	5.83	0.212674	1.000000
K	cassette	DCTN2	chr12	-	chr12:57929629-57940810	chr12:57929629-57939810;chr12:57939880-57940810		chr12:57939811-57939879			84.06	100.00	88.54	NA	96.67	NA	98.18	96.91	95.51	97.73	98.25	100.00	97.60	94.78	97.09	100.00	100.00	97.22	90.00	87.04	86.67	92.31	94.83	100.00	100.00	90.77	96.39	94.87	96.67	92.31	94.59	93.85	NA	96.36	100.00	95.38	98.18	92.68	-5.50	0.064890	0.621473
N	alternative_donor	STARD10	chr11	-	chr11:72470427-72492106;chr11:72470427-72491133;chr11:72470427-72492157	chr11:72470427-72492019		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		82.61	71.74	78.79	100.00	79.31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	81.48	69.23	78.57	91.67	88.00	100.00	89.74	85.71	90.48	84.62	100.00	90.00	78.57	73.53	70.59	94.74	76.19	83.33	76.61	80.59	3.98	0.914895	0.981916
K	intron_retention		chr11	+	chr11:64030281-64030969				chr11:64030280-64030281;chr11:64030969-64030970		7.14	0.00	8.93	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.22	0.00	2.86	0.00	0.00	NA	9.09	6.45	4.17	0.00	9.09	NA	0.00	13.04	6.98	7.14	8.70	NA	9.09	6.00	0.00	8.33	7.50	4.35	0.00	6.79	6.79	0.881795	1.000000
K	intron_retention	SCAND1	chr20	-	chr20:34542262-34542369				chr20:34542261-34542262;chr20:34542369-34542370		57.69	47.44	48.98	59.09	55.13	65.82	52.46	68.89	69.12	68.09	63.33	61.90	39.53	61.82	60.61	59.32	50.00	60.00	55.36	81.25	54.26	76.19	68.75	75.00	48.65	68.57	52.24	58.06	45.07	54.84	83.05	74.24	58.90	72.00	67.44	76.74	50.55	68.73	18.17	0.007493	1.000000
K	alternative_acceptor	TSPAN31,USP5	chr12	+	chr12:6971723-6972349	chr12:6971723-6972308		chr12:6972309-6972349	chr12:6972349-6972350		0.00	NA	0.00	NA	0.00	NA	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
N	alternative_acceptor	DCTN5	chr16	+	chr16:23677050-23678337;chr16:23677050-23680763	chr16:23677050-23678367		chr16:23678338-23678367;chr16:23678368-23680763	chr16:23678367-23678368;chr16:23680763-23680764		97.62	97.14	97.06	95.45	97.62	91.67	98.15	100.00	100.00	95.56	94.92	95.83	98.67	94.12	100.00	97.37	96.25	100.00	NA	96.67	90.91	97.22	98.31	97.14	94.44	100.00	95.65	97.44	89.29	97.14	95.24	96.77	95.00	97.92	98.15	97.62	97.14	97.15	0.01	0.658020	0.874938
K	cassette	TTC7A	chr2	+	chr2:47256524-47277087	chr2:47256524-47273453;chr2:47273571-47277087		chr2:47273454-47273570			100.00	100.00	100.00	NA	100.00	NA	95.65	96.30	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	93.55	NA	100.00	95.24	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	93.33	100.00	100.00	NA	100.00	100.00	100.00	98.15	-1.85	0.232978	0.709176
K	intron_retention		chr19	+	chr19:48282072-48283981				chr19:48282071-48282072;chr19:48283981-48283982		23.91	20.93	19.67	15.38	16.13	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.77	2.27	0.00	0.00	13.04	18.18	3.30	21.43	17.14	18.18	18.18	8.99	13.58	20.00	10.34	11.76	9.68	20.00	12.50	26.32	10.00	26.92	12.77	9.34	-3.43	0.991048	1.000000
K	intron_retention	NAGK	chr2	+	chr2:71297970-71298815				chr2:71297969-71297970;chr2:71298815-71298816		4.17	3.41	7.87	0.00	1.34	2.38	0.57	0.46	0.57	0.00	0.26	0.00	1.17	0.65	0.71	0.97	0.42	0.00	2.82	2.46	1.57	0.00	1.92	2.72	7.09	2.15	5.56	2.01	1.04	0.00	1.84	5.88	2.10	1.59	4.65	2.18	2.46	2.00	-0.46	0.725432	1.000000
K	intron_retention	SHKBP1	chr19	+	chr19:41096329-41096635				chr19:41096328-41096329;chr19:41096635-41096636		8.60	7.95	12.09	11.76	14.58	6.12	0.00	1.37	1.85	0.00	0.00	0.00	0.00	0.00	1.61	2.27	0.00	0.00	13.89	10.59	7.18	8.00	12.22	9.52	6.67	9.09	8.26	7.69	11.11	9.09	13.75	10.62	8.18	2.56	7.27	4.35	7.31	8.84	1.53	0.934918	1.000000
K	alternative_donor	KLC1,RP11-73M18.2	chr14	+	chr14:104145856-104151322	chr14:104145883-104151322		chr14:104145856-104145882	chr14:104145855-104145856		66.67	47.22	66.67	68.75	66.67	68.42	75.00	85.71	76.92	100.00	86.67	83.33	90.91	84.62	90.91	84.21	94.44	86.67	56.25	50.00	69.44	NA	84.62	NA	80.00	53.85	76.19	69.23	76.92	80.00	36.67	52.94	60.87	83.33	70.59	72.22	67.94	60.26	-7.67	0.613635	0.818096
N	alternative_last_exon	TMED7,TMED7-TICAM2	chr5	-	chr5:114917013-114956131	chr5:114952143-114956131	chr5:114914347-114917012	chr5:114949205-114952142			97.67	90.70	98.10	91.30	92.86	87.88	98.98	98.95	98.86	98.81	99.02	97.06	98.98	98.81	98.81	98.91	99.12	98.85	92.86	98.57	93.75	98.15	96.67	98.44	92.86	98.68	98.80	97.06	97.50	95.74	93.10	97.47	93.10	97.47	97.53	99.00	92.98	98.62	5.65	0.109624	0.333781
K	jcn_only_AD	BSCL2	chr11	-	chr11:62470022-62472939	chr11:62470022-62472772		chr11:62472773-62472939	chr11:62472939-62472940		96.97	87.76	92.45	100.00	90.91	NA	98.85	100.00	100.00	100.00	97.22	97.67	97.65	100.00	90.91	100.00	96.49	93.55	85.71	94.00	88.89	100.00	94.03	90.91	NA	95.74	95.92	100.00	95.24	100.00	92.59	90.67	85.00	93.88	92.98	94.81	87.76	96.35	8.59	0.144161	0.657607
K	alternative_donor	BID,SUN2	chr22	-	chr22:39136438-39137011	chr22:39136438-39136893		chr22:39136894-39137011	chr22:39137011-39137012		9.33	0.00	3.26	NA	NA	97.06	1.20	4.00	5.17	3.33	1.96	11.76	2.56	5.56	4.69	1.72	0.00	5.88	NA	7.81	8.33	0.00	4.44	25.93	0.00	23.53	7.14	25.00	3.70	66.67	22.22	10.64	NA	10.00	4.88	30.43	0.60	8.57	7.97	0.023876	0.295391
N	alternative_acceptor	TPST2	chr22	-	chr22:26922234-26924179	chr22:26923654-26924179		chr22:26922234-26923653	chr22:26922233-26922234		7.32	3.35	7.34	3.70	3.31	0.00	1.28	0.00	0.00	1.43	1.23	0.00	1.42	3.33	5.26	1.28	1.69	0.00	2.74	7.14	2.73	5.00	6.79	3.45	4.00	6.25	10.00	2.99	4.17	3.03	3.57	4.17	1.59	4.31	7.14	1.82	2.17	4.91	2.75	0.123913	0.610671
K	intron_retention	MRPS18A	chr6	-	chr6:43643009-43643230				chr6:43643008-43643009;chr6:43643230-43643231		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	4.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	7.69	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.883301	1.000000
K	cassette	PMPCB	chr7	+	chr7:102944938-102949398	chr7:102944938-102948042;chr7:102948156-102949398		chr7:102948043-102948155			78.26	90.00	75.93	100.00	86.21	NA	100.00	94.44	97.06	94.12	100.00	93.33	90.91	100.00	100.00	93.94	86.67	100.00	72.73	73.68	89.66	75.00	90.62	88.24	100.00	83.33	86.05	81.25	96.97	80.00	53.85	75.00	80.00	85.00	80.00	73.08	90.45	80.80	-9.66	0.326916	0.709176
K	jcn_only_AD	AURKAIP1	chr1	-	chr1:1310171-1310376;chr1:1310171-1310454	chr1:1310171-1310533		chr1:1310377-1310454;chr1:1310455-1310533	chr1:1310454-1310455;chr1:1310533-1310534		75.61	70.51	81.25	55.56	59.68	57.58	54.39	59.26	58.82	55.32	69.39	58.62	65.88	75.76	64.58	60.00	63.79	71.43	70.11	80.85	70.37	65.52	71.79	56.25	54.24	81.25	74.42	59.57	62.34	64.29	66.67	76.56	72.60	61.90	81.08	79.41	68.00	75.69	7.69	0.108287	0.646283
N	jcn_only_AD	ITGB1BP1	chr2	-	chr2:9547035-9547577;chr2:9547035-9547558	chr2:9547035-9548241					6.78	6.19	5.26	8.40	4.68	10.78	18.24	8.89	11.76	21.24	19.11	26.83	7.69	2.17	2.86	12.75	11.39	13.95	5.44	8.51	16.88	7.69	9.68	11.67	9.47	8.70	3.45	6.58	7.92	9.21	10.00	5.56	9.59	10.75	6.93	14.58	8.58	8.61	0.03	0.407788	0.671935
K	intron_retention		chr16	-	chr16:240570-242925				chr16:240569-240570;chr16:242925-242926		0.00	0.00	1.85	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	4.00	0.00	0.00	1.59	2.08	0.00	0.00	2.33	0.00	0.00	0.00	8.33	8.16	2.86	0.00	2.27	3.08	0.00	0.00	0.00	0.552691	1.000000
K	intron_retention		chr19	-	chr19:10461839-10463109				chr19:10461838-10461839;chr19:10463109-10463110		21.15	16.98	24.18	13.04	9.59	7.69	0.00	0.00	0.00	0.00	0.00	NA	2.17	0.00	5.77	0.00	3.03	NA	10.45	22.92	9.30	11.11	19.40	9.09	16.95	25.00	10.99	8.33	11.76	14.81	14.89	18.56	15.58	21.21	14.00	17.78	13.02	18.02	5.00	0.882991	1.000000
K	cassette	NQO2	chr6	+	chr6:3006794-3010258	chr6:3006794-3007049;chr6:3007170-3010258		chr6:3007050-3007169			0.00	0.82	3.39	2.50	2.46	2.44	0.00	0.00	5.56	0.00	0.00	0.00	0.00	2.63	3.41	1.72	0.00	1.56	2.33	2.08	0.00	4.00	2.53	4.17	0.00	1.04	1.79	1.45	0.68	1.27	3.45	4.11	0.00	2.25	1.67	3.90	0.00	1.56	1.56	0.183021	0.709176
N	intron_retention		chr11	-	chr11:117067863-117067945				chr11:117067862-117067863;chr11:117067945-117067946		100.00	95.65	75.00	89.47	100.00	100.00	100.00	100.00	93.33	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	91.49	91.67	83.33	NA	100.00	100.00	100.00	96.55	100.00	NA	100.00	100.00	100.00	88.24	93.62	NA	100.00	100.00	97.83	100.00	2.17	0.828914	1.000000
N	alternative_donor	LRP10	chr14	+	chr14:23346263-23348407	chr14:23346338-23348407		chr14:23346263-23346337	chr14:23346262-23346263		95.97	100.00	97.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.50	100.00	100.00	100.00	100.00	100.00	97.12	94.00	100.00	98.33	100.00	100.00	98.72	100.00	100.00	94.87	100.00	98.08	100.00	86.36	100.00	100.00	100.00	100.00	98.40	-1.60	0.837639	0.953571
K	intron_retention	APBA3	chr19	-	chr19:3751328-3751431				chr19:3751327-3751328;chr19:3751431-3751432		0.00	11.76	6.38	3.85	2.38	3.45	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.69	0.00	6.25	0.00	11.76	0.00	12.50	0.00	5.88	0.00	5.26	0.00	4.35	5.45	14.71	0.00	5.56	5.56	11.76	0.00	-11.76	0.208092	1.000000
N	jcn_only_AD	PRELID3B	chr20	-	chr20:57610182-57611525;chr20:57610182-57611551	chr20:57610182-57611555		chr20:57611526-57611551;chr20:57611552-57611555	chr20:57611551-57611552;chr20:57611555-57611556		6.67	0.00	0.00	0.00	0.00	6.67	0.00	0.00	3.08	0.00	4.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.59	0.00	1.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	CPVL	chr7	-	chr7:29160688-29185736;chr7:29160688-29185956	chr7:29160688-29186044		chr7:29185737-29185956;chr7:29185957-29186044	chr7:29185956-29185957;chr7:29186044-29186045		97.17	96.63	96.34	96.00	96.34	NA	95.79	97.44	96.30	96.63	96.54	98.09	96.18	92.68	95.74	97.21	97.82	97.78	90.91	97.53	100.00	96.23	96.68	97.11	NA	94.64	96.23	96.91	96.55	97.18	97.33	96.36	96.43	96.48	96.92	96.24	96.18	97.25	1.07	0.506723	0.760085
K	intron_retention	SPPL2A	chr15	-	chr15:51018324-51018517				chr15:51018323-51018324;chr15:51018517-51018518		23.08	20.00	28.28	23.53	20.59	30.00	0.00	8.51	5.26	0.00	0.00	13.64	0.00	8.57	15.00	7.69	12.50	10.00	5.26	13.24	5.88	30.00	21.88	47.62	0.00	30.30	29.58	42.11	25.00	33.33	10.17	15.24	13.04	30.77	30.00	43.55	2.63	11.71	9.07	0.233143	1.000000
K	jcn_only_AA	WDTC1	chr1	+	chr1:27622893-27623541	chr1:27622893-27623538		chr1:27623539-27623541	chr1:27623541-27623542		100.00	100.00	93.55	NA	NA	NA	92.68	88.89	90.62	96.00	93.55	100.00	100.00	100.00	93.62	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	93.33	95.24	NA	NA	NA	NA	100.00	NA	100.00	90.00	94.44	100.00	96.66	-3.34	0.459770	0.721779
N	alternative_acceptor	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837324		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		3.60	3.12	6.45	25.00	6.67	13.64	3.66	9.22	7.86	3.49	4.35	5.00	9.76	5.93	8.40	5.41	4.46	6.76	5.26	7.34	8.99	5.41	2.41	5.88	6.25	6.99	5.50	6.25	5.81	7.94	5.22	5.71	2.44	7.81	3.90	6.41	4.46	6.46	2.00	0.360323	0.709013
K	alternative_donor	SPG7	chr16	+	chr16:89620972-89623294	chr16:89622494-89623294		chr16:89620972-89622493	chr16:89620971-89620972		5.56	2.50	5.13	0.00	3.70	0.00	0.00	NA	9.09	NA	4.17	NA	4.17	NA	5.00	7.69	0.00	NA	2.70	7.14	7.41	5.56	4.65	5.26	12.00	10.00	13.51	11.76	11.54	20.00	7.14	5.56	2.70	6.25	3.45	6.45	2.70	7.14	4.44	0.114554	0.526033
K	cassette	LINC00963	chr9	+	chr9:132255875-132265601	chr9:132255875-132264675;chr9:132265419-132265601		chr9:132264676-132265418			9.52	11.76	17.14	13.33	7.79	9.09	16.42	26.32	16.13	12.82	13.87	11.76	7.59	8.33	9.09	5.56	5.88	13.33	10.34	9.09	8.57	8.33	7.58	NA	12.20	10.00	7.89	14.29	8.33	13.33	NA	13.33	12.00	13.04	9.80	13.33	11.88	9.52	-2.36	0.807053	0.936947
N	alternative_acceptor	LARP1	chr5	+	chr5:154191201-154211053;chr5:154191201-154193446	chr5:154191201-154196831		chr5:154193447-154196831;chr5:154196832-154211053	chr5:154196831-154196832;chr5:154211053-154211054		0.00	NA	0.00	NA	10.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	7.69	0.00	0.00	0.00	3.85	0.00	-3.85	0.183898	0.660713
K	alternative_acceptor	JMJD1C	chr10	-	chr10:64927870-64928194	chr10:64927895-64928194		chr10:64927870-64927894	chr10:64927869-64927870		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	93.10	90.91	100.00	100.00	100.00	NA	100.00	93.55	NA	86.67	NA	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor	CYB5D1,PGS1	chr17	+	chr17:76411109-76415626	chr17:76411109-76413182		chr17:76413183-76415626	chr17:76415626-76415627		2.17	0.00	2.41	0.00	0.00	5.00	NA	3.85	1.27	9.09	NA	NA	0.00	4.76	12.82	7.14	NA	NA	0.00	0.00	0.00	0.00	0.00	6.90	NA	0.00	1.37	0.00	0.00	3.45	0.00	1.67	0.00	5.88	0.00	3.66	0.00	1.08	1.08	0.094437	0.598353
K	alternative_acceptor	RAN	chr12	+	chr12:131357674-131359095	chr12:131357674-131359090		chr12:131359091-131359095	chr12:131359095-131359096		100.00	100.00	95.71	98.51	100.00	100.00	97.64	100.00	100.00	100.00	99.26	98.89	100.00	100.00	100.00	98.72	100.00	100.00	100.00	100.00	98.31	98.84	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.49	100.00	97.56	100.00	99.18	100.00	100.00	100.00	0.00	0.695065	0.885105
K	cassette	TOLLIP	chr11	-	chr11:1311640-1330695	chr11:1311640-1316874;chr11:1317025-1330695		chr11:1316875-1317024			100.00	95.00	95.65	100.00	100.00	NA	98.25	94.74	100.00	98.51	98.70	100.00	97.96	100.00	100.00	97.06	96.30	100.00	100.00	94.74	95.24	100.00	96.30	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	96.97	99.12	97.37	-1.75	0.410211	0.725576
N	alternative_acceptor	MIIP	chr1	+	chr1:12089339-12089897;chr1:12089339-12089821	chr1:12089339-12089790		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		5.56	10.71	NA	NA	10.00	4.17	0.00	0.00	2.13	8.33	NA	0.00	6.25	0.00	6.38	NA	NA	0.00	13.04	7.14	4.35	NA	9.09	NA	6.90	6.67	0.00	8.33	10.00	8.82	8.33	6.67	11.54	NA	NA	5.00	8.80	6.12	-2.69	0.191979	0.660713
K	alternative_acceptor	DNM2	chr19	+	chr19:10941055-10943667;chr19:10941055-10942979;chr19:10941055-10941653	chr19:10941055-10941656		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		20.83	25.38	16.11	23.88	24.56	12.16	29.51	19.67	24.07	28.21	22.58	24.00	20.25	23.53	22.03	25.00	23.08	27.27	15.71	16.07	15.60	17.31	14.17	10.53	25.20	22.09	21.01	21.57	18.99	10.53	16.67	17.50	16.33	17.11	18.18	18.18	22.73	20.25	-2.48	0.405701	0.720131
N	alternative_last_exon	SCO2,TYMP	chr22	-	chr22:50964348-50964674;chr22:50962854-50964674	chr22:50964571-50964674,chr22:50964586-50964674	chr22:50964181-50964347;chr22:50961997-50962853	chr22:50964430-50964570			96.88	97.00	94.15	99.21	85.87	98.72	99.12	96.83	94.43	94.06	91.58	96.72	95.89	95.39	95.97	97.17	92.37	98.06	98.43	95.85	96.92	98.75	92.25	92.47	99.81	98.21	92.70	96.87	95.30	96.25	93.59	91.29	94.63	93.72	93.18	95.61	97.72	96.34	-1.38	0.222727	0.443071
N	alternative_donor	FMNL1	chr17	+	chr17:43311099-43311438	chr17:43311354-43311438		chr17:43311099-43311353	chr17:43311098-43311099		3.10	12.50	2.91	23.08	22.58	NA	0.00	0.78	0.60	0.00	1.94	0.00	2.70	0.00	2.43	0.00	1.26	0.00	20.83	2.36	23.33	3.57	7.08	3.70	14.29	2.88	6.88	2.63	5.63	10.53	6.78	4.41	27.59	6.17	5.48	3.53	13.39	2.62	-10.77	0.060677	0.421463
K	intron_retention	SHARPIN	chr8	-	chr8:145153692-145153768				chr8:145153691-145153692;chr8:145153768-145153769		5.17	6.54	5.13	5.56	5.71	5.17	1.96	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	6.96	10.00	7.76	14.29	10.64	0.00	7.50	3.45	6.25	4.55	5.36	4.00	20.00	8.00	7.45	11.11	4.26	4.76	6.75	4.31	-2.44	0.983116	1.000000
K	intron_retention	RNF10	chr12	+	chr12:121001427-121001612				chr12:121001426-121001427;chr12:121001612-121001613		2.86	0.00	1.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	1.16	1.27	0.00	0.00	2.33	0.00	1.27	1.43	4.17	1.68	6.90	0.79	1.11	1.95	0.00	0.00	0.00	0.940313	1.000000
K	jcn_only_AA	PPP1R12C	chr19	-	chr19:55604234-55604383	chr19:55604237-55604383		chr19:55604234-55604236	chr19:55604233-55604234		30.65	33.68	41.28	26.67	27.85	38.46	39.44	40.58	26.67	44.83	38.89	35.29	36.08	38.75	37.04	32.50	42.11	33.33	28.75	23.76	33.33	31.43	30.77	37.50	32.94	33.33	31.45	33.33	31.82	34.48	23.91	23.58	27.91	31.75	21.13	31.43	33.31	31.99	-1.32	0.712872	0.873712
N	alternative_donor	SYVN1	chr11	-	chr11:64895961-64896034	chr11:64895961-64896030		chr11:64896031-64896034	chr11:64896034-64896035		12.00	9.52	9.09	0.00	4.76	NA	0.00	0.00	3.23	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	11.11	8.33	0.00	NA	0.00	6.67	5.56	5.56	NA	13.33	15.22	9.09	8.00	6.90	5.41	4.54	0.00	-4.54	0.912537	0.981916
K	intron_retention		chr11	+	chr11:247449-248775				chr11:247448-247449;chr11:248775-248776		2.78	1.20	8.62	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.96	0.00	0.00	0.00	1.08	1.74	0.00	0.00	1.89	4.12	2.06	2.44	2.04	0.00	0.00	3.10	2.97	0.00	1.01	1.39	3.33	2.24	2.88	1.64	3.33	4.39	0.60	2.94	2.34	0.942084	1.000000
N	jcn_only_AA	CUEDC1	chr17	-	chr17:55944777-55945510	chr17:55945054-55945510		chr17:55944777-55945053	chr17:55944776-55944777		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610967-242611605;chr2:242610821-242611605	chr2:242610841-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		0.00	0.00	4.35	0.00	1.09	0.00	0.00	0.00	8.00	5.26	5.41	0.00	4.35	5.88	0.00	6.67	0.00	NA	0.98	0.00	4.55	6.45	3.57	0.00	4.12	0.00	4.08	0.00	4.08	10.53	2.00	3.64	3.51	6.90	2.38	3.12	2.25	0.00	-2.25	0.524623	0.754861
K	intron_retention	RHOC	chr1	-	chr1:113246429-113247721				chr1:113246428-113246429;chr1:113247721-113247722		3.01	0.00	7.69	1.27	0.00	1.41	0.00	0.93	0.00	0.49	0.00	0.00	0.00	0.71	0.71	0.45	1.11	0.78	0.00	2.52	2.44	5.08	7.59	3.52	0.00	2.99	4.00	3.79	2.41	1.26	3.77	6.25	0.00	5.95	4.69	2.55	0.00	2.75	2.75	0.019623	1.000000
N	alternative_acceptor	EIF4G1	chr3	+	chr3:184046545-184046696;chr3:184046545-184046709	chr3:184046545-184046678		chr3:184046679-184046696;chr3:184046697-184046709	chr3:184046696-184046697;chr3:184046709-184046710		0.00	0.00	2.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	1.10	2.33	0.00	0.00	1.56	0.00	0.00	0.00	2.86	1.56	0.00	1.49	1.37	1.16	0.00	0.00	0.00	0.179672	0.660713
N	alternative_acceptor	M6PR	chr12	-	chr12:9094537-9095011;chr12:9093298-9095011;chr12:9093466-9095011	chr12:9093500-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		1.36	0.75	1.08	6.45	4.10	10.97	0.00	0.00	0.00	0.19	0.00	0.56	0.22	0.00	0.65	0.99	0.79	0.87	6.02	1.56	1.41	0.57	0.83	0.29	0.65	0.00	0.94	0.90	0.80	1.09	1.94	0.31	9.09	1.00	0.39	0.84	0.70	0.68	-0.02	0.267518	0.709013
N	alternative_last_exon	PLAUR	chr19	-	chr19:44152747-44156376,chr19:44156206-44156376,chr19:44151593-44156376,chr19:44151568-44156376;chr19:44131943-44156376	chr19:44150701-44156376	chr19:44131796-44131942	chr19:44150247-44150700			97.68	93.75	96.91	99.13	97.70	98.37	90.24	96.34	94.32	94.59	94.67	89.47	94.44	94.95	95.24	95.33	94.25	96.70	98.09	97.32	96.47	98.81	98.37	95.45	91.04	98.08	96.51	98.80	98.00	97.81	97.38	96.74	97.84	99.16	98.12	98.93	94.09	97.35	3.25	0.102701	0.323770
K	intron_retention	USP15	chr12	+	chr12:62785667-62786051				chr12:62785666-62785667;chr12:62786051-62786052		5.48	0.00	10.00	0.00	0.00	NA	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	6.45	0.00	3.33	5.77	NA	1.20	4.08	0.00	0.00	1.82	4.48	2.44	0.00	7.94	6.12	6.12	0.00	1.27	1.27	0.210917	1.000000
K	intron_retention		chr17	-	chr17:79827283-79827417				chr17:79827282-79827283;chr17:79827417-79827418		3.17	5.23	4.32	2.17	2.52	0.00	0.74	0.76	0.50	1.00	0.74	0.00	0.58	1.40	2.11	0.82	0.57	0.93	1.64	2.99	3.06	3.14	4.33	1.90	2.41	2.35	3.33	2.36	3.32	1.58	8.21	6.94	5.75	1.65	2.04	1.84	2.02	2.67	0.65	0.788972	1.000000
N	jcn_only_AA	SARAF	chr8	-	chr8:29924427-29927157;chr8:29924435-29927157	chr8:29921414-29927157		chr8:29921414-29924426;chr8:29924427-29924434	chr8:29921413-29921414;chr8:29924426-29924427		2.17	0.00	1.64	0.00	4.74	0.00	2.29	1.45	0.00	3.10	1.94	3.25	2.22	0.00	1.49	1.79	0.88	1.20	18.64	5.94	11.71	0.00	3.47	3.42	0.00	3.04	3.44	2.73	0.00	0.00	6.12	5.32	16.90	3.11	3.47	0.00	2.25	2.60	0.35	0.372549	0.663989
N	alternative_acceptor	RAP1A	chr1	+	chr1:112251887-112255059;chr1:112251887-112255052	chr1:112251887-112273050		chr1:112255053-112255059;chr1:112255060-112273050	chr1:112255059-112255060;chr1:112273050-112273051		5.56	0.00	0.00	NA	4.00	NA	0.00	9.09	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	11.76	0.00	NA	0.00	NA	0.00	0.00	5.56	NA	0.00	NA	NA	0.00	0.00	0.00	3.70	0.00	0.00	5.56	5.56	0.089745	0.592597
K	intron_retention	NR1H3	chr11	+	chr11:47283278-47283469				chr11:47283277-47283278;chr11:47283469-47283470		12.74	12.50	15.57	7.14	16.54	8.47	7.30	7.61	6.02	6.02	7.41	2.38	6.67	10.47	11.57	7.46	4.55	2.22	13.11	8.28	9.44	10.90	13.94	11.90	14.43	10.19	12.27	9.89	11.85	11.93	10.65	11.68	7.25	7.35	13.75	8.46	9.90	10.33	0.43	0.795156	1.000000
N	alternative_last_exon	COPE	chr19	-	chr19:19010519-19010681;chr19:19004385-19010681	chr19:19010536-19010681	chr19:19004225-19004384	chr19:19010323-19010535			92.56	92.11	92.81	91.36	91.67	91.90	94.61	91.28	93.33	89.87	91.08	90.19	94.16	94.52	93.96	88.24	88.49	89.91	93.53	93.99	91.88	94.31	92.37	91.11	93.84	90.24	92.68	91.43	94.12	92.83	92.37	93.47	93.66	91.24	90.44	91.87	93.75	92.47	-1.28	0.159199	0.370138
N	jcn_only_AA	DPF2,SCYL1	chr11	+	chr11:65305654-65305912;chr11:65305654-65305917	chr11:65305654-65305740		chr11:65305741-65305912;chr11:65305913-65305917	chr11:65305912-65305913;chr11:65305917-65305918		94.12	96.61	92.98	95.12	96.00	93.33	95.00	95.12	96.23	96.08	100.00	100.00	97.22	90.91	93.65	97.10	97.92	100.00	94.83	98.08	97.35	93.75	96.43	100.00	91.81	97.37	93.33	92.11	93.02	96.67	90.28	92.50	91.49	95.56	90.20	98.39	94.91	94.62	-0.29	0.914897	0.970942
K	intron_retention	IFT20	chr17	-	chr17:26655760-26656198				chr17:26655759-26655760;chr17:26656198-26656199		16.67	5.88	17.86	18.18	4.17	8.33	0.00	0.00	0.00	0.00	4.35	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	5.88	6.90	NA	6.45	7.14	0.00	0.00	7.14	5.88	3.57	0.00	21.43	13.04	2.63	6.67	4.55	8.70	0.00	5.88	5.88	0.455095	1.000000
K	coord_cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4455569-4462356	chr16:4455569-4457501;chr16:4457686-4458181;chr16:4458199-4462356		chr16:4457502-4457685;chr16:4458182-4458198			95.65	100.00	91.30	NA	NA	NA	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	93.75	100.00	93.75	100.00	NA	92.86	91.67	NA	95.00	100.00	96.77	100.00	96.83	-3.17	0.048224	0.643829
N	alternative_donor	PAIP2	chr5	+	chr5:138699612-138700252	chr5:138700111-138700252		chr5:138699612-138700110	chr5:138699611-138699612		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00	5.00	0.00	0.00	0.00	0.00	0.33	0.33	0.627226	0.830571
K	intron_retention		chr4	+	chr4:122735203-122737523				chr4:122735202-122735203;chr4:122737523-122737524		0.00	0.00	4.35	0.00	2.33	0.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	2.70	0.00	3.03	4.76	0.00	0.00	6.67	4.17	3.33	0.00	4.00	0.00	0.00	4.55	5.56	0.00	0.00	0.00	0.00	0.522037	1.000000
K	jcn_only_AA	RIOK3	chr18	+	chr18:21057233-21059289	chr18:21057233-21059280		chr18:21059281-21059289	chr18:21059289-21059290		100.00	100.00	96.55	95.83	88.24	100.00	96.49	98.39	98.77	100.00	100.00	100.00	100.00	100.00	98.85	100.00	98.44	97.62	100.00	96.47	100.00	98.31	100.00	100.00	100.00	96.63	100.00	100.00	100.00	100.00	95.15	95.88	100.00	97.50	100.00	100.00	100.00	97.51	-2.49	0.137500	0.663989
N	alternative_acceptor	IRF5	chr7	+	chr7:102045131-102047884	chr7:102045131-102047880		chr7:102047881-102047884	chr7:102047884-102047885		80.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	PITPNM1	chr11	-	chr11:67265794-67266066				chr11:67265793-67265794;chr11:67266066-67266067		3.33	0.00	12.07	NA	NA	NA	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	NA	NA	4.55	NA	NA	5.88	NA	0.00	7.14	7.14	NA	0.00	NA	14.29	10.81	NA	0.00	0.00	0.00	0.00	3.94	3.94	0.172319	1.000000
K	intron_retention	MED12	chrX	+	chrX:70357794-70360484				chrX:70357793-70357794;chrX:70360484-70360485		0.00	0.00	2.78	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.12	0.00	4.17	0.00	7.14	7.14	NA	11.11	4.17	0.00	0.00	0.00	0.00	0.612201	1.000000
K	cassette	CISD1	chr10	+	chr10:60029065-60036876	chr10:60029065-60035877;chr10:60035973-60036876		chr10:60035878-60035972			0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.86	0.00	0.00	0.00	NA	0.00	NA	0.00	8.33	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709176
N	jcn_only_AA		chr19	+	chr19:17420467-17424835	chr19:17420467-17424831		chr19:17424832-17424835	chr19:17424835-17424836		100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.84	99.10	100.00	100.00	100.00	100.00	100.00	97.62	100.00	95.31	94.12	NA	95.74	100.00	97.56	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.251885	0.663989
N	jcn_only_AD	MAPK13	chr6	+	chr6:36098479-36099047;chr6:36098935-36099047	chr6:36095733-36099047		chr6:36095733-36098478;chr6:36098479-36098934	chr6:36095732-36095733;chr6:36098478-36098479		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention		chr16	-	chr16:89774363-89774834				chr16:89774362-89774363;chr16:89774834-89774835		8.64	18.75	11.11	16.67	0.00	8.00	NA	0.00	0.00	NA	NA	0.00	0.00	7.69	7.69	NA	NA	NA	0.00	4.35	5.13	NA	21.43	16.67	14.29	15.22	15.07	NA	0.00	12.90	7.32	7.69	0.00	0.00	0.00	8.70	0.00	7.51	7.51	0.878599	1.000000
N	alternative_acceptor	MICAL1	chr6	-	chr6:109767066-109767338;chr6:109767156-109767338;chr6:109767079-109767338	chr6:109767105-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		1.64	0.00	0.00	0.00	7.55	11.76	6.67	4.88	0.00	6.25	6.25	0.00	7.14	0.00	0.00	10.00	0.00	NA	5.36	2.63	6.45	4.35	8.33	0.00	4.72	0.00	7.32	13.64	0.00	0.00	1.96	4.76	8.77	2.70	0.00	6.67	6.02	1.80	-4.22	0.036609	0.560254
N	alternative_donor	VAC14	chr16	-	chr16:70806076-70814692	chr16:70806076-70808041		chr16:70808042-70814692	chr16:70814692-70814693		0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.198939	0.570816
K	intron_retention	GAA	chr17	+	chr17:78082209-78082287				chr17:78082208-78082209;chr17:78082287-78082288		1.01	1.85	6.36	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	1.18	0.00	0.72	0.00	11.76	1.01	0.00	1.45	3.14	1.68	10.26	0.00	3.06	0.00	0.68	0.00	0.00	1.67	4.17	0.00	2.90	0.77	3.01	0.45	-2.56	0.503643	1.000000
N	cassette	BCAP29	chr7	+	chr7:107255727-107258772;chr7:107253878-107258772;chr7:107254178-107258772	chr7:107255727-107256705,chr7:107253878-107256705,chr7:107254178-107256705;chr7:107256835-107258772		chr7:107256706-107256834			7.14	NA	8.93	10.00	9.52	20.00	2.86	6.15	7.02	8.11	6.56	7.14	7.14	9.43	7.27	8.82	4.44	11.11	7.69	5.56	11.11	5.88	7.14	6.06	NA	7.89	11.43	7.14	23.53	14.29	12.00	10.64	7.69	9.68	6.98	6.98	7.42	7.51	0.10	0.306013	0.709176
K	alternative_acceptor	ARFGAP1,OGFR	chr20	+	chr20:61917066-61917723	chr20:61917066-61917717		chr20:61917718-61917723	chr20:61917723-61917724		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	96.00	90.00	95.00	100.00	100.00	90.48	100.00	87.50	NA	100.00	100.00	100.00	93.10	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.74	90.91	100.00	100.00	100.00	97.50	100.00	2.50	0.207414	0.669925
N	jcn_only_AD	CCNL1	chr3	-	chr3:49159804-49160617;chr3:49159804-49160157	chr3:49159804-49160136		chr3:49160137-49160157;chr3:49160158-49160617	chr3:49160157-49160158;chr3:49160617-49160618		100.00	100.00	100.00	NA	100.00	94.74	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	0.00	0.391002	0.657607
N	alternative_donor	RPL41	chr12	+	chr12:56510648-56510972;chr12:56510715-56510972;chr12:56510614-56510972	chr12:56510584-56510972		chr12:56510584-56510613;chr12:56510614-56510647;chr12:56510648-56510714	chr12:56510583-56510584;chr12:56510613-56510614;chr12:56510647-56510648		94.34	97.95	97.38	98.01	98.40	98.47	99.58	99.63	99.36	99.46	99.57	99.74	99.60	99.88	99.26	99.27	99.51	99.68	98.04	94.09	98.21	96.13	97.30	96.82	98.47	97.34	97.93	98.72	99.04	98.98	87.72	93.50	97.11	97.02	98.05	97.94	98.25	95.84	-2.41	0.175267	0.563271
K	cassette	SNX6	chr14	-	chr14:35074924-35078843	chr14:35074924-35077235;chr14:35077347-35078843		chr14:35077236-35077346			88.83	76.09	92.99	NA	96.67	NA	95.44	93.21	92.67	88.42	93.05	93.92	94.33	88.28	94.04	90.83	92.22	90.68	NA	94.27	100.00	92.71	91.84	90.17	100.00	91.49	92.54	92.86	93.15	88.89	91.53	88.79	80.00	92.81	90.43	92.56	94.33	91.51	-2.82	0.681924	0.883836
K	intron_retention	LGMN	chr14	-	chr14:93171053-93176016				chr14:93171052-93171053;chr14:93176016-93176017		21.05	5.00	21.43	0.00	13.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	10.53	0.00	NA	3.03	5.19	0.00	3.45	12.00	5.00	1.92	14.60	2.50	14.06	12.00	13.33	0.00	17.86	0.00	8.11	16.67	1.37	3.57	8.70	3.33	4.22	10.05	5.83	0.867550	1.000000
N	jcn_only_AA	PLXND1	chr3	-	chr3:129275272-129275459;chr3:129275314-129275459;chr3:129275318-129275459	chr3:129274387-129275459		chr3:129274387-129275271;chr3:129275272-129275313;chr3:129275314-129275317	chr3:129274386-129274387;chr3:129275271-129275272;chr3:129275313-129275314		5.92	14.97	7.23	17.74	15.45	44.23	0.42	0.87	1.30	0.89	0.90	0.00	0.00	0.00	1.56	0.00	0.64	0.00	19.70	5.92	9.25	11.49	9.54	7.02	18.18	1.98	3.27	4.07	3.47	2.96	12.82	8.42	34.19	8.33	6.89	7.83	16.57	3.95	-12.62	0.123592	0.663989
N	cassette	POLB	chr8	+	chr8:42218884-42226788;chr8:42218884-42229080	chr8:42218884-42220129;chr8:42220217-42226788,chr8:42220217-42229080		chr8:42220130-42220216			100.00	100.00	100.00	NA	NA	NA	86.67	NA	92.31	NA	NA	NA	86.67	NA	NA	NA	NA	NA	75.00	90.91	88.89	NA	100.00	NA	72.22	92.86	100.00	NA	NA	NA	84.62	97.14	77.27	NA	NA	NA	81.97	91.88	9.91	0.120962	0.709176
N	jcn_only_AD	NELFB	chr9	+	chr9:140158732-140160328;chr9:140158810-140160328	chr9:140158802-140160328		chr9:140158732-140158801;chr9:140158802-140158809	chr9:140158731-140158732;chr9:140158801-140158802		0.00	0.00	0.00	0.00	0.00	NA	0.00	3.23	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	5.88	9.52	0.00	0.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.846631	0.928405
N	cassette	BRMS1	chr11	-	chr11:66105361-66106191;chr11:66105279-66106191	chr11:66105361-66105713,chr11:66105279-66105713;chr11:66105754-66106191		chr11:66105714-66105753			94.44	96.23	94.52	93.94	91.81	92.73	100.00	91.67	100.00	96.67	100.00	100.00	100.00	96.43	98.04	94.64	100.00	100.00	92.77	95.45	94.35	90.91	94.90	100.00	93.75	100.00	92.00	97.83	96.34	93.75	90.22	90.76	90.38	98.11	92.22	91.67	94.99	94.94	-0.05	0.711052	0.896308
N	jcn_only_AD	SGF29	chr16	+	chr16:28518533-28592375	chr16:28565419-28592375		chr16:28518533-28565418	chr16:28518532-28518533		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	78.57	NA	NA	100.00	100.00	NA	82.76	NA	100.00	100.00	89.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177806	0.657607
N	alternative_donor	HGS	chr17	+	chr17:79651922-79652634;chr17:79652100-79652634	chr17:79651134-79652634		chr17:79651134-79651921;chr17:79651922-79652099	chr17:79651133-79651134;chr17:79651921-79651922		93.33	83.33	83.64	NA	NA	NA	94.12	100.00	100.00	100.00	97.30	100.00	95.65	96.30	95.16	96.84	97.50	100.00	NA	95.35	NA	93.55	90.91	90.00	90.48	94.59	91.49	93.33	91.67	95.83	100.00	95.24	NA	88.89	87.80	87.50	92.30	95.82	3.52	0.126720	0.540946
K	cassette	TBC1D10B	chr16	-	chr16:30370139-30370858	chr16:30370139-30370492;chr16:30370683-30370858		chr16:30370493-30370682			92.68	57.14	84.21	NA	81.25	NA	100.00	100.00	100.00	95.45	92.31	100.00	95.83	96.88	95.83	92.31	93.55	100.00	NA	78.95	89.47	92.31	70.27	NA	100.00	95.92	89.13	94.44	90.00	90.00	93.10	86.96	NA	90.91	87.10	94.29	97.91	94.51	-3.41	0.691135	0.886422
K	cassette	ZNRD1	chr6	+	chr6:30029447-30030000	chr6:30029447-30029693;chr6:30029795-30030000		chr6:30029694-30029794			100.00	100.00	100.00	100.00	90.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	85.71	NA	100.00	93.33	100.00	NA	92.31	NA	100.00	100.00	97.73	93.75	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.759680	0.925284
K	cassette	POLR2I	chr19	-	chr19:36605315-36605699	chr19:36605315-36605560;chr19:36605616-36605699		chr19:36605561-36605615			91.30	89.80	95.83	90.00	91.49	94.87	100.00	100.00	100.00	93.75	94.87	100.00	100.00	NA	100.00	92.86	96.61	100.00	95.52	100.00	94.34	88.89	94.44	100.00	81.58	92.86	100.00	100.00	97.67	100.00	100.00	90.00	88.31	93.75	88.89	89.66	92.66	100.00	7.34	0.260779	0.709176
N	cassette	UPP1	chr7	+	chr7:48141468-48146469;chr7:48141580-48146469;chr7:48141468-48143378	chr7:48141468-48142893,chr7:48141580-48142893;chr7:48143009-48146469,chr7:48143009-48143378		chr7:48142894-48143008			68.06	45.83	62.91	76.44	70.00	75.86	82.76	91.67	68.75	93.58	87.80	98.24	85.71	83.54	77.78	92.96	92.11	98.13	65.00	78.99	75.84	81.51	80.52	86.08	75.00	70.53	70.43	84.62	87.34	90.51	47.48	41.86	46.81	74.74	71.05	79.49	70.00	74.76	4.76	0.507256	0.788365
N	jcn_only_AD	NCAPH2	chr22	+	chr22:50957840-50959393;chr22:50958067-50959393	chr22:50957750-50959393		chr22:50957750-50957839;chr22:50957840-50958066	chr22:50957749-50957750;chr22:50957839-50957840		96.97	100.00	93.33	92.31	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	96.15	NA	100.00	100.00	100.00	100.00	88.89	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	0.00	0.765570	0.879655
N	cassette	SLC25A39	chr17	-	chr17:42397805-42398425	chr17:42397805-42397989;chr17:42398100-42398425		chr17:42397990-42398099			94.12	95.39	96.15	100.00	97.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.92	90.00	97.75	93.33	95.83	100.00	90.00	100.00	96.61	100.00	100.00	100.00	100.00	91.53	94.74	100.00	96.81	100.00	96.16	100.00	3.84	0.624522	0.863282
K	intron_retention		chr17	+	chr17:4846580-4846720				chr17:4846579-4846580;chr17:4846720-4846721		0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	3.57	0.00	0.00	0.00	2.56	0.00	0.00	3.57	2.44	0.00	0.00	10.53	0.00	3.57	0.00	2.13	1.72	0.00	0.00	0.00	0.586064	1.000000
K	alternative_donor	SSBP1	chr7	+	chr7:141438304-141438923;chr7:141438211-141438923	chr7:141438394-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		4.17	0.00	6.25	5.56	6.00	7.69	4.26	6.25	6.67	2.38	3.70	2.70	3.39	10.53	8.11	4.95	2.35	2.38	3.85	8.70	5.71	6.06	3.12	1.92	NA	NA	7.14	2.08	2.67	4.62	8.33	4.00	0.00	7.50	7.14	3.57	3.39	8.33	4.94	0.006643	0.187626
K	jcn_only_AA	ALDH16A1	chr19	+	chr19:49968020-49969037	chr19:49968020-49968994		chr19:49968995-49969037	chr19:49969037-49969038		100.00	100.00	100.00	NA	100.00	NA	90.24	96.15	100.00	NA	84.62	NA	93.88	93.10	80.00	100.00	86.36	NA	93.33	100.00	96.77	NA	93.75	NA	71.43	90.70	80.65	NA	90.32	NA	100.00	100.00	90.32	100.00	100.00	86.67	91.82	98.08	6.25	0.159666	0.663989
K	jcn_only_AD	TMEM255B	chr13	+	chr13:114469231-114472070	chr13:114471943-114472070					0.00	0.00	18.18	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	NA	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.391002	0.657607
N	jcn_only_AA	TMCC2	chr1	+	chr1:145209437-145248820	chr1:145209437-145248812		chr1:145248813-145248820	chr1:145248820-145248821		NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.33	100.00	NA	90.48	94.12	78.57	95.00	100.00	92.31	95.24	100.00	100.00	100.00	90.91	100.00	96.16	-3.84	0.185269	0.663989
N	jcn_only_AA	APTX	chr9	-	chr9:32974560-32984628;chr9:32966772-32984628;chr9:32980436-32984628	chr9:32980459-32984628		chr9:32966772-32974559;chr9:32974560-32980435;chr9:32980436-32980458	chr9:32966771-32966772;chr9:32974559-32974560;chr9:32980435-32980436		0.00	0.00	0.00	0.00	3.33	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.09	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	RNF31	chr14	+	chr14:24627221-24627350				chr14:24627220-24627221;chr14:24627350-24627351		5.32	6.10	7.14	0.00	10.00	6.17	0.00	2.56	0.00	0.00	0.00	0.00	3.33	0.00	0.00	5.00	5.00	0.00	2.38	7.69	4.17	9.52	6.25	7.14	6.52	5.88	13.73	13.64	9.09	8.00	6.59	6.67	9.68	8.57	11.11	8.64	4.71	5.60	0.88	0.980486	1.000000
N	cassette	ILKAP	chr2	-	chr2:239092755-239102915;chr2:239092755-239096771	chr2:239092755-239093821;chr2:239093929-239102915,chr2:239093929-239096771		chr2:239093822-239093928			100.00	100.00	96.97	89.47	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	90.00	96.30	96.88	100.00	NA	100.00	90.91	100.00	96.77	100.00	88.89	96.88	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.551812	0.820124
K	intron_retention	PRRC2A	chr6	+	chr6:31605102-31605222				chr6:31605101-31605102;chr6:31605222-31605223		2.78	3.43	5.19	4.00	4.15	2.73	0.00	0.00	1.27	2.82	0.00	0.00	0.00	2.00	0.98	0.00	0.00	1.89	3.40	3.70	3.00	7.46	4.55	4.76	3.67	2.42	3.70	1.10	4.85	2.48	7.58	5.14	4.58	5.32	4.55	3.73	3.42	2.60	-0.82	0.923688	1.000000
N	cassette	PIGF	chr2	-	chr2:46815266-46819613;chr2:46815319-46819613;chr2:46808731-46819613	chr2:46815319-46818941,chr2:46808731-46818941,chr2:46815266-46818941;chr2:46819065-46819613		chr2:46818942-46819064			5.26	0.00	0.00	NA	0.00	0.00	4.76	0.00	0.00	0.00	0.00	4.55	4.17	0.00	0.00	0.00	0.00	0.00	0.00	7.14	3.45	NA	8.33	NA	0.00	NA	10.00	NA	7.69	0.00	0.00	0.00	5.88	8.33	8.33	0.00	2.08	0.00	-2.08	0.995293	0.998556
N	alternative_acceptor	LINC01578,RP11-437B10.1	chr15	+	chr15:93429485-93435233	chr15:93429485-93431414		chr15:93431415-93435233	chr15:93435233-93435234		1.85	3.60	2.81	1.45	2.00	3.57	0.00	1.89	0.88	0.00	0.00	0.00	0.00	0.00	0.96	1.18	0.00	0.00	3.08	2.63	1.00	1.45	1.83	3.08	11.11	2.22	2.05	2.17	1.64	1.85	2.06	1.92	2.67	2.75	2.29	2.70	2.88	1.98	-0.90	0.378341	0.709013
K	intron_retention	C17orf62	chr17	-	chr17:80402001-80402322				chr17:80402000-80402001;chr17:80402322-80402323		8.82	13.33	7.18	0.00	6.15	20.00	0.00	0.66	1.47	0.00	3.08	0.00	0.93	0.00	1.53	0.00	1.52	3.12	7.50	6.61	8.70	13.04	7.79	12.82	5.45	5.81	6.60	7.14	5.36	7.59	2.63	5.14	9.52	3.03	8.93	5.93	6.47	4.22	-2.25	0.989231	1.000000
K	alternative_donor	BORCS8,BORCS8-MEF2B	chr19	-	chr19:19291571-19293381	chr19:19291571-19293102		chr19:19293103-19293381	chr19:19293381-19293382		15.79	4.55	9.68	16.67	8.57	5.00	0.00	2.78	0.00	4.55	3.33	0.00	5.71	4.65	2.78	3.45	0.00	0.00	12.00	9.09	13.51	13.33	10.26	0.00	10.00	8.70	4.00	4.76	10.26	3.23	8.70	10.00	13.64	4.55	17.24	2.56	7.86	8.70	0.84	0.824454	0.944306
N	cassette	PLXND1	chr3	-	chr3:129277419-129279172	chr3:129277419-129278462;chr3:129278627-129279172		chr3:129278463-129278626			96.03	98.13	98.31	100.00	93.94	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.09	100.00	100.00	97.85	100.00	100.00	95.18	93.98	100.00	100.00	95.88	100.00	98.12	100.00	100.00	94.39	94.81	96.58	99.02	97.35	100.00	100.00	0.00	0.889658	0.966777
K	jcn_only_AA	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10943667;chr19:10941055-10941653	chr19:10941055-10942979		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		6.67	8.44	10.09	4.65	11.11	0.00	2.83	5.61	0.00	5.26	6.25	5.71	2.70	2.99	3.53	2.67	3.79	0.00	4.05	12.17	4.92	3.80	9.09	9.62	11.67	4.31	7.01	8.45	12.09	5.26	6.98	9.25	0.00	9.35	7.76	6.47	3.44	6.14	2.70	0.506451	0.758797
K	intron_retention	TRAF7	chr16	+	chr16:2225955-2226049				chr16:2225954-2225955;chr16:2226049-2226050		5.00	2.86	8.00	0.00	9.09	16.67	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	2.13	0.00	7.69	6.90	2.70	17.65	8.57	16.67	0.00	3.03	9.80	0.00	0.00	0.00	13.33	11.63	7.14	0.00	8.82	5.88	1.43	4.01	2.58	0.920921	1.000000
N	cassette	RNF181	chr2	+	chr2:85823773-85824567;chr2:85823773-85824226	chr2:85823773-85823944;chr2:85824055-85824567,chr2:85824055-85824226		chr2:85823945-85824054			88.13	86.67	87.34	84.03	83.07	81.02	96.34	96.55	95.43	89.92	92.70	88.30	92.50	85.19	87.73	87.30	87.27	78.16	70.05	77.44	77.82	70.37	69.81	67.80	84.68	90.07	86.96	87.36	87.32	88.32	90.16	87.54	77.97	81.63	87.41	86.15	85.68	89.10	3.42	0.510604	0.791208
N	cassette	SPNS1	chr16	+	chr16:28992937-28994177;chr16:28990793-28994177	chr16:28990793-28993676,chr16:28992937-28993676;chr16:28993867-28994177		chr16:28993677-28993866		chr16:28990726-28990792;chr16:28994178-28994243	97.22	100.00	100.00	100.00	94.79	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	100.00	96.49	100.00	98.48	94.29	100.00	100.00	100.00	98.51	97.27	100.00	100.00	100.00	91.89	95.18	98.61	97.50	100.00	100.00	0.00	0.556437	0.821676
N	jcn_only_AA	ARHGEF40	chr14	+	chr14:21555623-21556126	chr14:21555623-21556114		chr14:21556115-21556126	chr14:21556126-21556127		0.00	0.00	6.45	NA	0.00	NA	5.26	0.00	0.00	NA	4.35	NA	13.04	0.00	NA	NA	3.57	NA	0.00	0.00	0.00	NA	3.70	NA	NA	0.00	0.00	NA	0.00	NA	14.29	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.723204	0.877224
N	alternative_acceptor	MPDU1	chr17	+	chr17:7490336-7490478	chr17:7490336-7490459		chr17:7490460-7490478	chr17:7490478-7490479		8.16	7.27	12.07	16.67	8.62	9.09	2.78	1.59	2.02	3.57	3.74	2.94	1.77	3.28	3.96	2.25	2.94	1.72	14.71	13.33	12.00	16.13	14.29	10.00	23.53	7.55	10.87	7.89	10.42	7.69	25.58	20.00	10.71	9.26	10.00	10.14	8.99	7.86	-1.13	0.965938	0.991031
K	intron_retention	MVD	chr16	-	chr16:88723991-88724322				chr16:88723990-88723991;chr16:88724322-88724323		0.00	0.00	11.54	0.00	11.11	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.78	0.00	0.00	NA	3.57	13.33	6.25	0.00	5.71	5.26	13.51	5.00	5.26	4.55	13.33	0.00	11.11	13.51	4.76	4.55	2.70	4.17	1.78	2.50	0.72	0.496845	1.000000
N	alternative_donor	RXRA	chr9	+	chr9:137293729-137299994	chr9:137299339-137299994		chr9:137293729-137299338	chr9:137293728-137293729		2.33	8.57	1.89	NA	NA	NA	1.19	0.00	0.00	0.00	0.93	0.00	1.94	0.00	0.00	0.00	0.83	NA	18.18	4.35	0.00	NA	5.71	NA	12.50	2.38	2.56	0.00	4.00	NA	10.00	4.17	12.50	13.33	10.34	6.67	10.54	2.35	-8.18	0.091272	0.479695
K	jcn_only_AA	AD000671.6,U2AF1L4	chr19	-	chr19:36233521-36234709	chr19:36233705-36234709		chr19:36233521-36233704	chr19:36233520-36233521		78.57	100.00	90.91	100.00	95.89	96.49	NA	NA	100.00	100.00	100.00	NA	84.62	NA	90.00	NA	100.00	NA	97.92	100.00	94.29	100.00	100.00	100.00	100.00	90.00	81.48	100.00	100.00	100.00	93.33	100.00	97.56	100.00	95.83	100.00	97.92	91.66	-6.26	0.343365	0.663989
K	intron_retention	FLOT1	chr6	-	chr6:30708369-30708455				chr6:30708368-30708369;chr6:30708455-30708456		0.00	3.28	4.26	8.57	2.56	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.51	1.27	8.33	4.41	4.11	7.14	1.16	3.41	4.88	2.70	5.56	4.55	3.79	0.00	8.82	3.92	3.70	0.00	0.58	0.58	0.493862	1.000000
K	jcn_only_AD	CD163L1,RHEBL1	chr12	-	chr12:7585333-7585969	chr12:7585333-7585939		chr12:7585940-7585969	chr12:7585969-7585970		0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	0.00	0.00	NA	0.75	0.00	NA	0.00	1.61	0.00	NA	0.00	NA	0.00	3.92	7.50	50.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.38	0.00	-0.38	0.382816	0.657607
K	intron_retention		chr6	-	chr6:109768644-109768883				chr6:109768643-109768644;chr6:109768883-109768884		14.58	35.48	19.57	15.38	16.13	NA	3.23	3.70	0.00	3.45	1.64	0.00	1.41	3.39	4.17	2.56	1.82	0.00	12.50	11.76	11.36	13.04	22.73	5.56	19.05	17.74	21.43	4.76	13.56	8.33	23.64	15.38	4.76	14.63	15.38	9.68	8.63	13.17	4.54	0.986107	1.000000
K	intron_retention	SGF29	chr16	+	chr16:28602257-28602910				chr16:28602256-28602257;chr16:28602910-28602911		7.69	5.62	5.26	5.88	3.23	4.70	NA	4.76	0.00	0.00	0.00	0.00	0.00	7.69	4.76	7.14	0.00	0.00	1.43	6.25	0.00	0.00	5.00	0.00	0.00	4.44	NA	0.00	6.25	2.22	7.32	6.67	5.38	5.88	9.09	8.57	1.43	6.79	5.36	0.201904	1.000000
K	jcn_only_AA	MATR3	chr5	+	chr5:138658657-138660984;chr5:138658657-138661024	chr5:138658657-138661128		chr5:138660985-138661024;chr5:138661025-138661128	chr5:138661024-138661025;chr5:138661128-138661129		93.40	100.00	89.08	96.00	91.04	100.00	80.00	75.00	80.99	84.76	85.02	84.55	85.38	70.00	82.52	89.71	88.79	89.74	96.30	86.08	90.24	90.53	89.31	95.33	100.00	85.07	87.16	82.35	91.26	93.88	95.65	91.78	100.00	92.31	91.03	95.86	98.15	85.57	-12.58	0.115046	0.663989
K	intron_retention	KIAA0100	chr17	-	chr17:26944018-26944249				chr17:26944017-26944018;chr17:26944249-26944250		3.57	5.45	10.61	50.00	14.81	NA	0.00	0.00	0.00	0.00	1.47	0.00	0.00	0.00	0.00	2.86	0.00	5.88	20.00	8.70	4.76	21.05	6.52	12.50	NA	0.00	4.48	16.67	0.00	NA	NA	11.36	0.00	13.16	4.26	9.68	0.00	0.00	0.00	0.967229	1.000000
N	alternative_acceptor	ADM	chr11	+	chr11:10327646-10327777;chr11:10327646-10327939;chr11:10327646-10327881;chr11:10327646-10327847	chr11:10327646-10327878		chr11:10327778-10327847;chr11:10327848-10327878;chr11:10327879-10327881;chr11:10327882-10327939	chr11:10327847-10327848;chr11:10327878-10327879;chr11:10327881-10327882;chr11:10327939-10327940		95.97	100.00	95.73	96.58	97.30	97.10	100.00	99.12	99.39	100.00	100.00	98.88	100.00	98.98	99.48	98.90	100.00	98.30	NA	94.83	91.10	96.69	96.63	97.70	NA	97.19	98.16	97.09	97.44	96.77	92.13	90.67	86.36	96.10	95.88	96.65	100.00	96.58	-3.42	0.954234	0.990505
N	jcn_only_AA		chr1	+	chr1:36766686-36767156	chr1:36766686-36767153		chr1:36767154-36767156	chr1:36767156-36767157		100.00	79.17	93.15	100.00	93.33	NA	90.91	90.24	91.80	88.30	93.10	89.39	88.89	95.56	89.86	88.64	85.42	86.84	83.33	83.78	83.33	95.24	100.00	91.23	75.00	100.00	96.30	96.77	83.33	93.02	92.00	93.22	100.00	91.43	92.86	92.16	86.11	93.78	7.67	0.133261	0.663989
N	cassette	LZTS2	chr10	+	chr10:102762704-102765214	chr10:102762704-102763263;chr10:102763924-102765214		chr10:102763264-102763923			100.00	100.00	100.00	NA	89.47	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	NA	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	100.00	100.00	0.00	0.262118	0.709176
N	alternative_acceptor	FGD2	chr6	+	chr6:36990147-36992992;chr6:36990147-36992548;chr6:36990147-36990964;chr6:36990147-36993567	chr6:36990147-36990971		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		2.13	2.94	NA	NA	0.00	NA	0.00	0.54	0.00	0.00	0.00	3.57	1.54	0.44	1.72	4.17	0.00	1.75	10.00	1.98	NA	NA	3.57	2.27	7.14	0.69	NA	3.12	0.00	1.59	0.00	0.00	4.00	5.26	5.00	0.78	3.47	0.61	-2.85	0.081081	0.585944
N	alternative_donor	TPST2	chr22	-	chr22:26922234-26924179	chr22:26922234-26923571		chr22:26923572-26924179	chr22:26924179-26924180		2.56	0.00	3.81	1.89	2.01	0.00	0.65	0.00	0.00	0.00	1.23	0.00	0.95	0.00	5.26	1.28	0.57	0.00	0.93	3.70	1.83	5.00	3.21	3.45	1.03	6.25	4.55	0.00	2.13	0.00	3.57	2.13	0.00	1.77	4.59	1.82	0.79	3.06	2.27	0.087598	0.475124
N	cassette	AKR1A1	chr1	+	chr1:46016828-46027460;chr1:46016828-46032240	chr1:46016828-46018107;chr1:46018236-46027460,chr1:46018236-46032240		chr1:46018108-46018235			39.19	33.79	30.49	21.88	26.60	38.46	32.12	28.68	45.00	23.53	29.97	23.28	31.15	32.46	48.84	30.93	26.96	22.99	41.67	37.50	28.75	23.16	30.43	25.23	30.36	30.26	33.82	25.56	26.83	21.84	20.59	28.77	29.09	23.02	29.37	21.51	31.63	31.36	-0.27	0.643159	0.868691
N	alternative_last_exon	DYNLT1	chr6	-	chr6:159058927-159065713	chr6:159062393-159065713	chr6:159057506-159058926	chr6:159062351-159062392			100.00	100.00	100.00	100.00	100.00	98.96	100.00	99.60	100.00	100.00	100.00	100.00	100.00	99.59	100.00	100.00	100.00	99.70	96.67	99.37	100.00	100.00	100.00	100.00	92.31	99.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.76	100.00	99.59	-0.41	0.312222	0.513924
N	cassette	APH1A	chr1	-	chr1:150239879-150241097;chr1:150240190-150241097	chr1:150239879-150240356,chr1:150240190-150240356;chr1:150240392-150241097		chr1:150240357-150240391			94.92	95.00	86.25	70.00	83.33	NA	98.50	100.00	96.39	93.85	93.18	96.97	97.28	97.03	95.65	93.16	94.90	94.74	NA	91.84	NA	83.33	79.71	81.82	100.00	96.92	90.00	87.50	91.23	90.32	96.00	86.96	NA	87.93	88.37	85.34	97.89	96.46	-1.43	0.332857	0.709176
K	jcn_only_AA	POR	chr7	+	chr7:75615560-75615654	chr7:75615560-75615634		chr7:75615635-75615654	chr7:75615654-75615655		3.60	0.00	2.15	1.77	2.82	4.44	0.00	0.00	0.00	1.30	0.00	3.45	0.00	0.00	0.00	0.97	0.00	0.00	0.81	2.74	1.41	1.33	2.31	0.00	1.69	1.33	0.00	2.61	1.62	0.00	2.56	1.85	2.55	3.39	5.38	4.88	0.41	1.95	1.54	0.282371	0.663989
K	cassette	AK2	chr1	-	chr1:33480196-33487193	chr1:33480196-33486967;chr1:33487063-33487193		chr1:33486968-33487062			90.32	58.62	80.77	NA	72.73	80.00	96.30	95.12	95.71	94.87	96.49	93.94	94.44	98.25	96.27	96.43	95.29	100.00	61.54	84.38	85.19	80.00	83.33	93.33	64.71	86.36	95.24	90.00	100.00	88.24	91.67	100.00	78.95	87.50	90.00	95.83	71.83	91.00	19.17	0.077191	0.641134
N	jcn_only_AD	GGA1	chr22	+	chr22:38026166-38026909	chr22:38026178-38026909		chr22:38026166-38026177	chr22:38026165-38026166		100.00	100.00	95.59	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.47	100.00	100.00	96.59	94.59	100.00	98.37	100.00	100.00	100.00	100.00	100.00	97.53	100.00	100.00	98.70	100.00	95.92	97.94	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001969-30002104;chr16:30001127-30002104	chr16:30001919-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	6.25	NA	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	alternative_first_exon	HMGB1	chr13	-	chr13:31037832-31037951,chr13:31037832-31038304,chr13:31037832-31039822,chr13:31037832-31191352,chr13:31037832-31192354;chr13:31037832-31039209;chr13:31037832-31038297	chr13:31037832-31039932	chr13:31039210-31039379;chr13:31038298-31038447	chr13:31039933-31040102			93.91	98.72	95.31	100.00	100.00	100.00	98.79	96.25	98.44	99.61	99.19	99.56	99.47	96.61	98.25	99.57	99.13	99.51	97.56	98.57	98.33	97.14	98.01	95.52	100.00	92.59	96.72	100.00	100.00	100.00	100.00	92.79	97.50	97.44	98.23	99.01	98.75	96.43	-2.32	0.096280	0.265019
K	intron_retention	UBA7	chr3	-	chr3:49848525-49848705				chr3:49848524-49848525;chr3:49848705-49848706		31.58	50.00	40.00	NA	NA	NA	2.38	3.57	6.98	NA	0.00	15.38	6.98	8.70	23.91	0.00	NA	NA	NA	32.61	NA	NA	NA	43.75	53.33	26.98	23.53	NA	NA	46.15	21.74	44.44	NA	20.00	18.18	44.83	28.49	24.36	-4.13	0.860979	1.000000
K	cassette	HLA-DMA	chr6	-	chr6:32917667-32920725	chr6:32917667-32918295;chr6:32918581-32920725		chr6:32918296-32918580			96.84	95.78	97.50	97.31	97.39	97.12	98.51	100.00	100.00	98.91	99.08	98.91	99.25	95.24	100.00	100.00	98.67	100.00	98.05	97.01	96.39	98.26	98.53	98.73	93.90	98.43	96.08	98.99	98.47	98.98	97.03	92.48	94.04	98.01	97.60	97.21	96.91	97.02	0.11	0.489291	0.775321
K	intron_retention	RPUSD3	chr3	-	chr3:9879892-9880715				chr3:9879891-9879892;chr3:9880715-9880716		6.67	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	3.12	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.76	NA	6.67	NA	3.85	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.601311	1.000000
K	jcn_only_AA	RANBP1	chr22	+	chr22:20113892-20114477	chr22:20113892-20114474		chr22:20114475-20114477	chr22:20114477-20114478		65.38	66.67	55.10	54.93	61.54	66.23	58.33	72.73	61.76	59.03	63.70	69.84	59.06	NA	60.53	66.30	64.00	61.26	58.62	44.00	55.84	55.17	57.95	55.88	67.65	NA	55.17	62.82	57.95	66.67	53.85	59.38	56.15	61.70	50.68	58.33	58.84	59.61	0.77	0.770011	0.896803
K	intron_retention	LST1	chr6	+	chr6:31555096-31556339				chr6:31555095-31555096;chr6:31556339-31556340		62.50	56.01	55.32	48.51	49.11	53.33	51.76	59.52	61.54	40.00	43.05	47.66	55.29	57.69	73.08	43.28	44.30	43.33	49.66	57.89	57.50	50.00	49.61	45.61	59.43	61.29	63.04	43.33	51.56	52.17	68.42	53.85	52.91	44.44	53.55	49.72	54.10	60.41	6.31	0.109599	1.000000
K	cassette	TMEM50A	chr1	+	chr1:25678185-25683283	chr1:25678185-25679372;chr1:25679466-25683283		chr1:25679373-25679465			94.75	100.00	94.72	96.47	98.26	94.34	97.69	96.18	97.87	97.59	98.78	95.82	96.05	97.84	97.60	96.34	95.92	94.59	98.72	95.57	95.74	95.41	99.39	96.41	100.00	96.30	96.49	95.33	95.14	97.20	95.83	94.71	91.46	98.34	96.48	94.70	98.20	96.00	-2.20	0.405002	0.720274
N	alternative_acceptor	TAOK2	chr16	+	chr16:30780720-30780822;chr16:30780720-30780807	chr16:30780720-30780795		chr16:30780796-30780807;chr16:30780808-30780822	chr16:30780807-30780808;chr16:30780822-30780823		100.00	100.00	96.77	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	96.43	92.31	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	E4F1	chr16	+	chr16:2285145-2285216				chr16:2285144-2285145;chr16:2285216-2285217		11.11	8.86	3.23	3.70	6.78	6.12	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	11.63	11.11	11.90	4.55	10.00	6.25	5.36	0.00	2.78	0.00	4.65	6.67	32.14	13.64	15.85	0.00	3.12	7.69	7.11	11.11	4.00	0.757045	1.000000
N	coord_cassette	TM4SF19,TM4SF19-TCTEX1D2	chr3	-	chr3:196051312-196065134	chr3:196051312-196053825;chr3:196053904-196054260;chr3:196054463-196065134		chr3:196053826-196053903;chr3:196054261-196054462			100.00	85.29	NA	92.00	86.21	100.00	98.72	100.00	100.00	98.44	98.50	98.35	85.25	100.00	NA	89.01	87.80	88.57	84.62	100.00	100.00	92.03	92.59	94.20	100.00	100.00	NA	100.00	96.61	100.00	94.74	NA	95.00	92.81	89.02	89.16	90.15	100.00	9.85	0.048563	0.643829
N	alternative_acceptor	BABAM1,CTD-2278I10.6	chr19	+	chr19:17384995-17387332;chr19:17384995-17386597;chr19:17384995-17386609	chr19:17384995-17386585		chr19:17386586-17386597;chr19:17386598-17386609;chr19:17386610-17387332	chr19:17386597-17386598;chr19:17386609-17386610;chr19:17387332-17387333		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	8.33	0.00	5.56	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	CLEC7A	chr12	-	chr12:10269849-10270752				chr12:10269848-10269849;chr12:10270752-10270753		90.91	88.00	93.33	NA	86.11	NA	100.00	100.00	100.00	100.00	91.67	91.67	87.27	100.00	81.82	88.24	93.75	NA	92.31	93.88	86.67	NA	89.58	NA	84.00	90.91	100.00	100.00	89.13	NA	NA	90.91	72.73	92.86	88.52	87.50	87.63	93.88	6.25	0.247930	1.000000
K	alternative_acceptor	PDCD5	chr19	+	chr19:33073139-33075860	chr19:33073139-33075855		chr19:33075856-33075860	chr19:33075860-33075861		100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	93.48	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.64	100.00	100.00	0.00	0.178688	0.660713
K	jcn_only_AD	CARS	chr11	-	chr11:3022479-3023199	chr11:3022479-3023191		chr11:3023192-3023199	chr11:3023199-3023200		32.14	20.37	24.44	25.58	27.93	27.78	21.43	25.00	20.88	38.89	21.28	57.14	27.03	25.71	36.11	29.41	28.89	NA	32.59	24.32	32.76	36.36	26.47	20.83	22.22	31.25	25.96	31.58	28.57	27.27	34.72	28.41	29.17	34.15	21.28	30.16	24.62	28.48	3.86	0.235611	0.657607
K	alternative_last_exon	CD55	chr1	+	chr1:207512763-207520476,chr1:207512763-207527351,chr1:207512763-207540098;chr1:207512763-207540714;chr1:207512763-207531860;chr1:207512763-207532890	chr1:207512763-207513735	chr1:207540715-207540832;chr1:207531861-207531966;chr1:207532891-207534311	chr1:207513736-207514111			11.54	11.76	8.38	11.43	26.67	12.50	NA	12.50	12.96	13.04	NA	12.12	36.36	11.43	18.31	9.52	NA	8.33	23.53	9.30	15.93	4.55	9.09	8.57	35.71	11.76	6.99	9.09	NA	6.06	23.53	17.16	33.33	8.00	20.00	6.17	33.33	11.65	-21.68	0.030660	0.217248
K	intron_retention		chr11	+	chr11:67815272-67815348				chr11:67815271-67815272;chr11:67815348-67815349		10.39	13.11	19.41	22.52	20.33	15.22	1.20	2.65	4.32	1.36	3.29	1.52	1.59	4.73	7.77	3.20	3.38	1.27	7.84	8.92	9.92	10.69	23.55	10.81	4.55	11.41	14.36	12.15	17.81	8.46	9.68	15.48	8.12	17.79	16.90	10.48	6.20	9.30	3.11	0.747781	1.000000
K	intron_retention	EML3	chr11	-	chr11:62372653-62373113				chr11:62372652-62372653;chr11:62373113-62373114		5.71	5.32	9.86	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.13	7.14	5.26	NA	6.90	3.70	7.32	13.04	10.64	20.00	5.00	3.70	14.06	0.00	4.76	4.55	6.90	4.88	3.03	15.00	13.95	4.88	4.01	3.70	-0.31	0.870235	1.000000
K	jcn_only_AA	DENND4B	chr1	-	chr1:153904732-153905117	chr1:153904917-153905117		chr1:153904732-153904916	chr1:153904731-153904732		98.25	98.41	100.00	NA	93.33	NA	96.97	100.00	100.00	96.55	98.39	100.00	100.00	100.00	98.15	100.00	96.83	NA	NA	100.00	100.00	95.65	98.31	100.00	100.00	100.00	100.00	100.00	100.00	92.86	92.86	100.00	92.86	100.00	100.00	100.00	98.41	100.00	1.59	0.634320	0.838192
K	cassette	LUC7L	chr16	-	chr16:240570-242925	chr16:240570-240660;chr16:240802-242925		chr16:240661-240801			0.00	4.05	3.64	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.69	4.00	3.70	2.00	3.12	2.08	5.36	5.26	0.00	0.00	0.00	1.49	8.33	2.17	1.45	2.00	2.27	1.56	2.75	2.00	-0.75	0.849154	0.949480
K	jcn_only_AD	U2AF1L4	chr19	-	chr19:36233705-36234709	chr19:36233705-36234055					15.38	5.00	9.09	9.09	4.11	0.00	NA	NA	15.38	0.00	0.00	NA	0.00	NA	5.26	NA	9.09	NA	0.00	8.33	10.81	0.00	0.00	0.00	0.00	10.00	0.00	0.00	4.35	0.00	6.67	0.00	0.00	8.70	0.00	4.17	0.00	9.16	9.16	0.009463	0.237005
K	intron_retention		chr3	+	chr3:52523695-52524090				chr3:52523694-52523695;chr3:52524090-52524091		7.69	2.86	10.00	NA	4.55	NA	0.00	NA	0.00	NA	0.00	NA	2.08	0.00	0.00	0.00	1.89	NA	NA	8.33	NA	NA	8.47	NA	13.33	0.00	6.00	NA	3.23	NA	NA	17.65	0.00	6.67	7.69	5.88	2.08	3.85	1.77	0.945410	1.000000
K	intron_retention		chr21	+	chr21:35446046-35497640				chr21:35446045-35446046;chr21:35497640-35497641		3.90	0.00	3.49	11.11	5.56	13.79	0.00	1.14	0.71	0.93	2.17	1.60	0.00	2.58	3.62	3.03	4.76	1.87	18.18	4.17	5.68	2.70	0.00	5.38	NA	3.70	3.38	4.17	6.25	2.38	2.70	2.35	5.26	2.70	0.00	2.31	0.00	3.20	3.20	0.940131	1.000000
K	intron_retention	XAB2	chr19	-	chr19:7687331-7687415				chr19:7687330-7687331;chr19:7687415-7687416		2.86	0.00	5.36	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	7.32	12.82	0.00	2.22	0.00	0.00	2.70	4.00	0.00	0.00	0.00	21.28	11.11	0.00	0.00	0.00	2.38	0.00	2.78	2.78	0.432414	1.000000
N	cassette	UFM1	chr13	+	chr13:38928434-38934847;chr13:38928434-38933437	chr13:38928434-38932229;chr13:38932270-38933437,chr13:38932270-38934847		chr13:38932230-38932269			86.67	100.00	97.87	100.00	100.00	100.00	95.74	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	97.06	100.00	100.00	100.00	97.56	100.00	100.00	100.00	NA	100.00	100.00	95.65	100.00	97.78	92.86	100.00	100.00	100.00	93.55	100.00	100.00	100.00	0.00	0.418092	0.728056
N	alternative_acceptor	CLEC2B	chr12	-	chr12:10009841-10010072;chr12:10007073-10010072	chr12:10007084-10010072		chr12:10007073-10007083;chr12:10007084-10009840	chr12:10007072-10007073;chr12:10007083-10007084		95.76	98.09	89.47	100.00	98.18	100.00	98.39	97.92	97.50	100.00	97.96	100.00	98.59	100.00	100.00	100.00	98.51	100.00	98.48	95.35	99.18	96.30	96.67	100.00	97.98	96.67	95.24	97.14	97.30	100.00	96.36	94.24	98.47	90.57	90.16	97.22	98.43	96.52	-1.92	0.117150	0.606219
N	alternative_acceptor	ABHD12	chr20	-	chr20:25281425-25282854;chr20:25270866-25282854;chr20:25282270-25282854;chr20:25282015-25282854	chr20:25275667-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		13.04	9.00	20.00	11.11	12.24	5.66	11.36	5.26	6.67	10.71	11.86	5.00	17.78	6.67	10.53	13.33	18.00	13.33	7.48	5.88	6.67	11.54	16.09	15.00	11.40	9.09	19.05	13.79	17.14	6.67	2.44	5.56	5.00	10.00	11.32	5.13	10.18	6.28	-3.90	0.190308	0.660713
K	jcn_only_AA	RPL8	chr8	-	chr8:146016696-146017376;chr8:146017258-146017376	chr8:146017300-146017376					87.15	84.45	93.06	83.81	85.78	75.88	88.65	93.94	86.82	85.50	85.71	85.89	87.70	87.62	87.50	88.14	85.28	83.59	81.85	92.31	88.89	92.60	92.79	91.97	73.55	89.16	88.60	91.92	92.07	90.34	90.34	90.37	84.13	89.11	88.27	90.05	84.29	89.75	5.46	0.028875	0.637417
K	intron_retention		chr6	+	chr6:163984752-163985698				chr6:163984751-163984752;chr6:163985698-163985699		16.22	0.00	15.56	NA	3.03	NA	0.00	5.00	0.00	NA	7.14	0.00	6.90	0.00	0.00	NA	5.36	0.00	10.53	12.50	0.00	NA	8.00	20.00	0.00	5.36	16.67	NA	4.55	NA	2.17	12.00	3.23	14.81	19.23	8.51	1.61	5.18	3.56	0.831906	1.000000
N	cassette	VKORC1	chr16	-	chr16:31102664-31105877;chr16:31099148-31105877	chr16:31102664-31104632,chr16:31099148-31104632;chr16:31104804-31105877		chr16:31104633-31104803			74.55	66.67	61.40	69.05	69.72	71.43	85.71	82.93	86.00	84.21	84.21	91.07	79.57	96.00	77.78	83.61	82.28	87.50	73.97	84.09	72.73	86.00	83.08	92.86	58.82	91.67	70.97	85.00	82.35	90.20	70.00	63.16	65.52	77.19	76.36	80.77	70.32	83.51	13.19	0.071782	0.631856
N	alternative_acceptor	TREM2	chr6	-	chr6:41126729-41127529;chr6:41126802-41127529;chr6:41126805-41127529	chr6:41126845-41127529		chr6:41126729-41126801;chr6:41126802-41126804;chr6:41126805-41126844	chr6:41126728-41126729;chr6:41126801-41126802;chr6:41126804-41126805		0.00	0.75	0.00	0.00	2.43	0.00	0.43	0.00	0.00	0.49	0.93	0.50	1.04	0.00	NA	1.04	0.87	0.00	0.94	0.00	0.55	0.00	2.02	0.00	0.38	0.00	5.00	0.00	1.82	0.87	0.00	0.00	0.84	1.32	2.81	0.00	0.79	0.00	-0.79	0.001187	0.302671
K	intron_retention		chr15	+	chr15:91492951-91493383				chr15:91492950-91492951;chr15:91493383-91493384		3.45	4.76	7.69	NA	4.55	NA	0.00	0.00	0.00	0.00	0.00	NA	2.22	0.00	3.45	0.00	0.00	NA	5.56	3.57	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	8.11	4.76	4.17	0.00	4.35	3.49	0.00	-3.49	0.589281	1.000000
N	alternative_acceptor	RHOQ	chr2	+	chr2:46803796-46808066;chr2:46803796-46807747;chr2:46803796-46808070;chr2:46803796-46827732;chr2:46803796-46803887	chr2:46803796-46807695		chr2:46803888-46807695;chr2:46807696-46807747;chr2:46807748-46808066;chr2:46808067-46808070;chr2:46808071-46827732	chr2:46807695-46807696;chr2:46807747-46807748;chr2:46808066-46808067;chr2:46808070-46808071;chr2:46827732-46827733		0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.178349	0.660713
N	alternative_donor	DOCK2	chr5	+	chr5:169483773-169484583	chr5:169484354-169484583		chr5:169483773-169484353	chr5:169483772-169483773		14.58	6.67	14.08	NA	3.03	NA	1.74	4.35	0.00	0.00	1.94	0.00	2.38	0.00	4.55	1.49	2.44	0.00	6.25	8.33	6.67	5.56	8.87	3.64	NA	11.76	19.23	9.52	4.12	0.00	6.25	12.50	4.76	5.33	8.77	2.52	4.76	7.29	2.53	0.218394	0.595046
K	intron_retention	ACTR8	chr3	-	chr3:53904173-53905258				chr3:53904172-53904173;chr3:53905258-53905259		16.67	0.00	9.52	0.00	0.00	8.00	0.00	4.00	0.00	0.00	0.00	0.00	10.00	0.00	3.45	0.00	0.00	0.00	7.69	9.52	10.00	11.76	13.33	11.11	NA	0.00	13.33	NA	0.00	8.33	9.09	14.29	11.11	NA	13.33	16.67	7.69	6.54	-1.15	0.946376	1.000000
K	intron_retention	ADAMTSL4	chr1	+	chr1:150531642-150531762				chr1:150531641-150531642;chr1:150531762-150531763		4.76	0.00	26.09	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	8.33	0.00	NA	NA	NA	0.00	12.00	6.25	0.00	4.35	0.00	NA	10.00	NA	0.00	0.00	35.29	0.00	4.76	4.76	0.424527	1.000000
N	intron_retention		chr1	-	chr1:161019125-161019384				chr1:161019124-161019125;chr1:161019384-161019385		73.53	77.55	82.67	NA	87.50	NA	85.33	83.70	84.21	NA	77.78	NA	82.14	88.89	79.03	76.47	84.09	NA	81.82	81.63	100.00	NA	82.93	NA	76.60	74.60	86.15	80.00	89.47	NA	65.00	68.63	68.75	73.68	76.36	NA	79.69	78.11	-1.57	0.864987	1.000000
K	intron_retention	NFKBID	chr19	-	chr19:36381393-36386881				chr19:36381392-36381393;chr19:36386881-36386882		2.90	7.53	3.90	0.00	0.71	NA	NA	NA	NA	NA	0.00	0.00	NA	NA	5.88	0.00	0.00	0.00	0.00	1.79	0.00	1.92	0.50	0.00	0.00	4.65	0.00	0.00	1.43	NA	2.27	2.41	3.33	4.81	1.63	2.13	1.67	2.58	0.92	0.772285	1.000000
K	cassette	POLR2E	chr19	-	chr19:1091907-1095257	chr19:1091907-1093902;chr19:1094078-1095257		chr19:1093903-1094077			97.40	94.64	97.06	95.35	98.36	100.00	99.39	100.00	97.41	98.50	99.44	98.04	99.11	98.00	99.24	99.42	98.65	100.00	96.05	94.55	97.50	95.95	96.60	97.22	98.59	100.00	97.33	97.53	98.62	97.67	96.08	96.69	99.02	100.00	100.00	99.32	98.81	97.70	-1.11	0.916490	0.977920
N	jcn_only_AA	ACIN1	chr14	-	chr14:23533386-23533563;chr14:23533467-23533563	chr14:23533431-23533563		chr14:23533386-23533430;chr14:23533431-23533466	chr14:23533385-23533386;chr14:23533430-23533431		15.28	22.54	15.62	9.09	19.05	NA	21.05	26.56	22.73	25.93	23.08	37.50	27.12	24.53	27.94	28.00	26.19	23.53	13.64	14.73	23.08	15.71	22.07	16.22	0.00	13.79	25.00	28.95	20.29	20.00	15.58	14.92	16.67	22.12	22.22	19.51	18.86	15.43	-3.43	0.735013	0.881383
K	jcn_only_AA	AGAP3	chr7	+	chr7:150815432-150815591	chr7:150815432-150815560		chr7:150815561-150815591	chr7:150815591-150815592		0.00	0.00	0.00	5.00	0.00	NA	0.00	2.70	2.17	1.32	0.00	0.00	0.00	0.00	0.00	1.69	1.85	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	ACADVL	chr17	+	chr17:7127389-7127464				chr17:7127388-7127389;chr17:7127464-7127465		4.61	3.52	4.43	3.35	7.62	2.97	0.52	1.49	1.71	0.00	1.57	0.00	0.40	2.94	1.05	1.14	1.56	0.00	2.30	5.85	4.00	9.29	11.22	4.42	0.86	5.56	5.56	4.43	5.32	3.60	8.33	13.11	2.06	7.14	6.70	3.69	1.46	5.08	3.62	0.056356	1.000000
N	cassette	CYC1	chr8	+	chr8:145150132-145151026	chr8:145150132-145150735;chr8:145150933-145151026		chr8:145150736-145150932			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	93.06	95.56	100.00	100.00	100.00	100.00	100.00	0.00	0.675779	0.882035
K	intron_retention	METTL9	chr16	+	chr16:21636437-21666547				chr16:21636436-21636437;chr16:21666547-21666548		1.04	0.00	2.14	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	3.33	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	4.65	0.00	0.00	0.00	2.70	0.00	2.04	2.04	0.430351	1.000000
K	jcn_only_AA	ARMC6,LENG8	chr19	+	chr19:54960485-54963269	chr19:54960485-54962466					100.00	100.00	86.11	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.88	100.00	100.00	NA	NA	77.78	NA	NA	84.21	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	90.48	NA	100.00	94.74	90.48	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention	NFKBIA	chr14	-	chr14:35873005-35873623				chr14:35873004-35873005;chr14:35873623-35873624		2.55	3.57	2.27	1.53	1.32	5.73	0.00	0.35	0.25	0.22	0.90	0.30	0.00	0.73	0.91	0.52	0.53	0.40	0.00	2.56	2.68	2.10	1.98	2.04	7.69	2.32	1.88	1.64	1.40	1.11	5.10	4.36	3.17	1.73	2.63	1.71	1.58	2.43	0.85	0.685072	1.000000
K	intron_retention	HNRNPA1	chr12	+	chr12:54678102-54678332				chr12:54678101-54678102;chr12:54678332-54678333		5.30	1.71	5.00	1.01	0.36	0.74	0.00	0.00	0.26	0.39	0.61	0.16	0.65	0.75	1.16	0.55	0.51	0.23	0.55	4.48	0.82	4.71	2.43	5.88	0.00	4.00	4.18	1.13	1.25	1.29	7.84	6.25	1.69	5.47	5.45	2.84	0.60	4.24	3.64	0.123945	1.000000
N	jcn_only_AD	NUDT5	chr10	-	chr10:12221132-12223654;chr10:12221132-12226887	chr10:12221132-12222393					0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.840717	0.926053
N	intron_retention		chr12	-	chr12:108678989-108682313				chr12:108678988-108678989;chr12:108682313-108682314		84.51	87.50	81.48	NA	85.71	NA	94.74	100.00	100.00	NA	100.00	NA	100.00	93.65	100.00	100.00	100.00	NA	82.52	81.43	88.64	90.00	81.36	NA	95.51	87.83	81.82	100.00	95.83	NA	82.22	66.67	80.65	84.00	73.61	NA	91.12	86.17	-4.95	0.679060	1.000000
K	intron_retention	MYL6	chr12	+	chr12:56552496-56553758				chr12:56552495-56552496;chr12:56553758-56553759		5.26	0.00	10.29	1.03	0.76	1.21	0.00	9.09	NA	2.86	0.00	0.00	4.35	3.70	23.53	1.96	2.38	0.00	0.00	5.32	1.04	3.75	3.48	2.25	0.00	8.22	12.24	3.51	5.66	1.67	2.01	4.48	0.74	6.20	4.92	4.65	0.00	5.29	5.29	0.348715	1.000000
N	cassette	MYDGF	chr19	-	chr19:4660016-4664887	chr19:4660016-4660680;chr19:4660763-4664887		chr19:4660681-4660762			96.04	98.18	100.00	99.33	100.00	100.00	99.23	100.00	100.00	99.58	100.00	100.00	99.25	100.00	100.00	100.00	99.40	100.00	98.43	100.00	99.32	98.70	98.80	100.00	93.71	100.00	100.00	99.32	100.00	97.88	100.00	97.35	98.03	100.00	98.78	98.52	98.31	100.00	1.69	0.184792	0.709176
N	jcn_only_AA	TGOLN2	chr2	-	chr2:85549856-85552037;chr2:85549865-85552037;chr2:85545847-85552037	chr2:85549794-85552037		chr2:85545847-85549793;chr2:85549794-85549855;chr2:85549856-85549864	chr2:85545846-85545847;chr2:85549793-85549794;chr2:85549855-85549856		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.90	1.49	1.65	1.56	1.44	5.00	1.75	2.78	1.67	0.00	0.00	0.00	0.00	0.00	4.00	4.35	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.520136	0.760908
K	alternative_acceptor	ACE,CTD-2501B8.1,SEPT9	chr17	+	chr17:75489159-75493396	chr17:75489159-75492295		chr17:75492296-75493396	chr17:75493396-75493397		5.34	5.43	6.50	2.67	2.94	5.00	0.27	1.05	0.00	0.11	0.31	0.42	0.63	0.00	0.00	0.62	0.70	0.86	2.70	5.32	2.63	5.23	5.49	6.80	7.25	6.72	6.67	2.36	2.82	3.32	6.85	6.56	5.00	6.25	4.79	8.32	3.85	5.33	1.48	0.696710	0.885862
N	alternative_acceptor	LILRB4,RPS11	chr19	+	chr19:55178201-55179088;chr19:55178201-55178815;chr19:55178201-55179085;chr19:55178201-55178293	chr19:55178201-55178261		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		2.63	2.13	2.83	2.75	1.62	2.15	0.67	0.59	0.66	0.72	0.24	0.58	0.58	0.83	1.79	1.18	0.69	0.84	2.86	2.23	1.83	5.47	4.99	6.06	2.82	3.19	3.05	3.26	1.76	3.02	2.21	2.51	1.41	4.31	2.68	4.55	1.77	2.22	0.45	0.739320	0.902878
K	intron_retention	TMED4	chr7	-	chr7:44621423-44621645				chr7:44621422-44621423;chr7:44621645-44621646		5.41	0.00	6.35	NA	0.00	NA	0.00	3.17	6.10	11.43	1.30	14.08	0.00	10.77	8.75	4.88	1.03	11.11	NA	7.69	0.00	3.57	2.56	4.44	NA	4.65	4.17	0.00	0.00	11.76	8.33	9.30	0.00	6.98	0.00	9.38	0.00	6.55	6.55	0.056041	1.000000
K	intron_retention		chr19	+	chr19:41088373-41089303				chr19:41088372-41088373;chr19:41089303-41089304		0.89	5.36	4.26	0.00	2.70	NA	0.00	0.78	0.00	0.00	0.00	0.00	0.78	0.00	3.33	0.00	0.00	0.00	0.00	1.94	0.00	0.00	1.27	0.00	8.33	1.60	2.14	0.00	1.16	0.00	0.00	0.71	5.00	0.00	4.69	1.28	2.89	0.83	-2.06	0.643851	1.000000
K	cassette	TRPV2	chr17	+	chr17:16337013-16340102	chr17:16337013-16338172;chr17:16338284-16340102		chr17:16338173-16338283			92.68	100.00	100.00	89.19	93.94	93.62	96.97	98.48	95.45	90.91	91.89	96.00	100.00	95.40	100.00	92.68	91.67	88.89	97.47	95.24	95.58	95.45	100.00	91.30	100.00	100.00	92.86	91.43	94.23	93.88	92.86	95.65	96.39	95.65	95.24	96.83	98.73	95.32	-3.42	0.089173	0.652861
K	intron_retention	ACO2	chr22	+	chr22:41922458-41923291				chr22:41922457-41922458;chr22:41923291-41923292		0.00	4.11	0.00	5.00	6.82	4.88	3.97	0.00	13.89	5.31	6.71	1.05	5.19	0.00	8.06	7.63	5.20	1.25	3.03	0.00	2.83	1.25	4.00	0.00	0.00	0.00	1.41	1.54	3.12	2.94	0.00	0.00	0.88	1.71	2.59	0.66	3.50	0.00	-3.50	0.045142	1.000000
K	jcn_only_AD	EIF2AK2,MITD1	chr2	-	chr2:99790480-99797293	chr2:99790480-99797169		chr2:99797170-99797293	chr2:99797293-99797294		9.09	0.00	13.73	NA	9.09	NA	0.00	9.09	6.67	0.00	0.00	NA	4.76	0.00	6.90	0.00	0.00	NA	0.00	0.00	3.85	NA	3.70	NA	NA	0.00	2.33	NA	10.00	NA	0.00	12.77	NA	0.00	5.26	5.88	0.00	0.00	0.00	0.439200	0.696909
K	intron_retention	ARL8A	chr1	-	chr1:202104655-202104834				chr1:202104654-202104655;chr1:202104834-202104835		1.35	0.00	2.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.59	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.86	0.00	4.00	0.38	1.33	0.00	1.74	0.00	5.51	0.86	4.35	1.40	0.78	1.33	0.00	0.57	0.57	0.576082	1.000000
N	alternative_donor	PNPLA6	chr19	+	chr19:7621969-7623735;chr19:7623614-7623735	chr19:7622171-7623735		chr19:7621969-7622170;chr19:7622171-7623613	chr19:7621968-7621969;chr19:7622170-7622171		73.49	73.68	60.56	NA	84.38	NA	93.75	87.80	90.91	100.00	92.00	100.00	91.89	95.35	85.71	83.33	85.19	NA	90.32	74.14	85.11	72.73	65.71	NA	88.89	67.92	76.56	75.00	82.86	NA	78.12	74.00	84.09	71.43	66.67	81.25	89.60	76.13	-13.47	0.170950	0.563271
K	jcn_only_AD	MAP4K4	chr2	+	chr2:102503700-102504239	chr2:102503724-102504239		chr2:102503700-102503723	chr2:102503699-102503700		21.18	26.23	21.18	32.94	27.78	25.27	27.03	22.58	26.67	30.77	27.87	27.42	21.05	23.81	30.36	25.60	32.77	24.84	21.43	23.29	28.21	25.86	16.00	23.09	0.00	27.12	30.77	26.87	19.18	22.13	18.18	19.51	14.75	24.52	27.55	24.33	21.24	22.93	1.69	0.356209	0.657607
K	cassette	SREBF1	chr17	-	chr17:17717725-17718148	chr17:17717725-17717928;chr17:17718062-17718148		chr17:17717929-17718061			95.00	100.00	96.55	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	90.48	NA	NA	100.00	97.96	100.00	100.00	NA	91.30	91.18	94.74	100.00	100.00	90.91	100.00	100.00	0.00	0.523201	0.799165
N	intron_retention		chr6	-	chr6:132780772-132781853				chr6:132780771-132780772;chr6:132781853-132781854		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	90.00	100.00	91.67	100.00	100.00	100.00	96.43	100.00	95.83	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.974160	1.000000
K	cassette	RPL30	chr8	-	chr8:99055004-99057574	chr8:99055004-99057054;chr8:99057317-99057574		chr8:99057055-99057316			93.78	94.99	96.99	97.32	97.06	95.45	99.36	100.00	99.44	99.25	99.08	99.50	99.63	100.00	100.00	99.50	99.72	99.63	96.79	97.44	98.30	98.74	98.21	99.32	98.39	97.56	99.27	99.10	99.40	99.35	94.74	95.80	92.01	98.86	98.09	98.09	97.59	97.50	-0.09	0.811748	0.936947
N	jcn_only_AA	GPR137B,KCNC4	chr1	+	chr1:236368551-236371360;chr1:236368551-236371349;chr1:236368551-236376613	chr1:236368551-236370432		chr1:236370433-236371349;chr1:236371350-236371360;chr1:236371361-236376613	chr1:236371349-236371350;chr1:236371360-236371361;chr1:236376613-236376614		7.56	0.00	5.00	0.00	2.13	0.00	7.35	6.31	7.28	4.02	0.00	2.35	6.74	8.18	5.40	4.32	3.79	3.98	11.11	6.38	2.63	6.11	4.96	3.47	0.00	25.58	15.03	2.73	8.55	4.43	7.58	9.35	0.00	5.60	6.94	4.78	3.37	7.57	4.20	0.133490	0.663989
N	cassette	SPNS1	chr16	+	chr16:28990793-28993676;chr16:28990793-28994177;chr16:28990793-28993221	chr16:28990793-28992790;chr16:28992937-28994177,chr16:28992937-28993676,chr16:28992937-28993221		chr16:28992791-28992936		chr16:28990726-28990792;chr16:28994178-28994243	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.05	100.00	100.00	100.00	100.00	100.00	100.00	98.33	95.00	100.00	100.00	95.12	98.44	96.94	100.00	100.00	100.00	94.64	95.35	100.00	97.67	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	PPP1R13L	chr19	-	chr19:54819034-54822726	chr19:54819034-54822683		chr19:54822684-54822726	chr19:54822726-54822727		98.81	100.00	100.00	96.88	100.00	98.00	100.00	98.32	95.00	98.00	100.00	98.26	100.00	99.23	100.00	100.00	100.00	98.86	98.39	98.59	99.17	100.00	100.00	100.00	100.00	99.16	99.53	100.00	100.00	99.64	98.54	98.44	99.10	100.00	96.72	98.56	100.00	98.70	-1.30	0.035763	0.451661
N	alternative_acceptor	GPS2,RP11-542C16.2	chr17	-	chr17:7217714-7217806	chr17:7217723-7217806		chr17:7217714-7217722	chr17:7217713-7217714		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.34	96.43	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	KMO	chr1	+	chr1:241750043-241752049;chr1:241751182-241752049;chr1:241751757-241752049;chr1:241751302-241752049	chr1:241750039-241752049		chr1:241750039-241750042;chr1:241750043-241751181;chr1:241751182-241751301;chr1:241751302-241751756	chr1:241750038-241750039;chr1:241750042-241750043;chr1:241751181-241751182;chr1:241751301-241751302		100.00	92.86	100.00	100.00	100.00	99.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.58	100.00	96.92	100.00	99.26	98.90	98.71	NA	100.00	100.00	100.00	100.00	99.53	100.00	100.00	100.00	97.99	97.83	98.73	100.00	100.00	0.00	0.572794	0.799136
N	jcn_only_AD	BST2,WIZ	chr19	-	chr19:17514136-17514488;chr19:17514136-17514507	chr19:17514136-17514484		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		0.00	0.00	0.00	0.00	0.00	0.00	27.45	24.17	23.34	25.19	28.68	24.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.930340	0.961177
K	jcn_only_AA	NACA	chr12	-	chr12:57118308-57119046	chr12:57118334-57119046		chr12:57118308-57118333	chr12:57118307-57118308		6.55	4.96	5.68	2.73	5.41	7.27	4.19	5.61	4.50	3.04	3.65	5.68	5.08	5.10	4.91	2.85	5.03	5.96	1.85	4.72	3.53	4.52	4.62	2.38	0.00	4.30	5.26	5.85	4.32	3.57	6.86	4.05	8.39	3.02	4.15	2.92	4.58	5.36	0.78	0.291482	0.663989
N	cassette	HDAC5	chr17	-	chr17:42161223-42163939	chr17:42161223-42161922;chr17:42162044-42163939		chr17:42161923-42162043			97.06	100.00	100.00	NA	95.45	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	95.65	92.86	93.33	NA	100.00	NA	100.00	100.00	93.75	NA	100.00	NA	93.75	96.30	100.00	91.67	100.00	NA	100.00	95.41	-4.59	0.130062	0.709176
K	intron_retention	ANAPC2	chr9	-	chr9:140078244-140079364				chr9:140078243-140078244;chr9:140079364-140079365		20.00	0.00	5.71	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	3.12	0.00	0.00	NA	0.00	0.00	8.33	0.00	10.53	9.68	0.00	18.18	3.33	3.57	0.00	0.00	0.00	0.488453	1.000000
K	jcn_only_AD	ARHGEF2,RFX5	chr1	-	chr1:155917807-155920089	chr1:155917807-155920059		chr1:155920060-155920089	chr1:155920089-155920090		24.59	18.18	25.41	21.74	30.00	NA	28.95	26.03	25.76	38.46	33.93	41.76	24.00	22.58	26.09	30.09	45.37	44.37	28.57	18.90	22.95	22.64	30.34	32.09	0.00	24.86	21.34	24.00	36.96	27.87	24.05	20.21	15.38	21.51	23.20	27.72	21.09	24.32	3.23	0.382101	0.657607
K	intron_retention	MED12	chrX	+	chrX:70361221-70361732				chrX:70361220-70361221;chrX:70361732-70361733		0.00	2.44	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	NA	2.56	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	2.78	0.00	0.00	0.00	1.22	0.00	-1.22	0.937117	1.000000
N	jcn_only_AD	ACIN1	chr14	-	chr14:23547476-23548028;chr14:23547476-23547573	chr14:23547476-23548142		chr14:23547574-23548028;chr14:23548029-23548142	chr14:23548028-23548029;chr14:23548142-23548143		0.00	0.00	3.30	NA	NA	NA	0.00	2.27	2.56	0.00	0.00	NA	3.39	0.00	0.00	0.00	0.00	0.00	NA	6.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.13	0.00	4.35	0.00	0.00	0.00	0.648035	0.818639
K	alternative_acceptor	ARL6IP4	chr12	+	chr12:123465847-123466117;chr12:123465847-123466141	chr12:123465847-123466202		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		11.11	0.00	9.52	0.00	5.31	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	3.12	2.60	0.00	2.08	12.50	4.94	0.00	4.41	9.52	6.11	0.00	9.30	0.00	5.10	0.00	0.00	9.68	4.35	3.12	5.71	7.89	1.04	4.54	3.50	0.254260	0.709013
N	jcn_only_AA	EDEM2	chr20	-	chr20:33705657-33706400;chr20:33703737-33706400	chr20:33703762-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		3.37	0.00	2.44	0.00	1.39	0.00	0.00	5.88	6.38	0.00	6.56	0.00	5.56	1.72	0.00	3.70	8.33	2.78	0.00	3.26	4.90	0.00	2.25	0.00	0.00	2.08	2.53	0.00	3.45	2.56	0.00	2.88	0.00	5.56	5.45	1.64	0.00	2.67	2.67	0.175946	0.663989
K	intron_retention	FXR2	chr17	-	chr17:7495673-7495821				chr17:7495672-7495673;chr17:7495821-7495822		0.00	0.00	1.37	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	2.13	0.00	0.00	2.22	0.00	0.00	0.00	0.00	5.56	3.23	4.76	0.00	3.12	2.22	0.00	1.02	1.02	0.972751	1.000000
N	coord_cassette	DHPS	chr19	-	chr19:12786957-12790270	chr19:12786957-12787921;chr19:12788026-12788104;chr19:12788211-12790270		chr19:12787922-12788025;chr19:12788105-12788210			100.00	100.00	100.00	NA	100.00	93.33	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	88.24	85.71	90.00	NA	90.00	NA	100.00	100.00	90.48	100.00	94.12	100.00	100.00	87.50	76.47	NA	NA	100.00	100.00	100.00	0.00	0.474807	0.692687
K	cassette	AP1B1	chr22	-	chr22:29724885-29726366	chr22:29724885-29725700;chr22:29725710-29726366		chr22:29725701-29725709			34.88	23.91	27.16	26.53	30.39	28.95	50.17	48.46	40.74	59.56	54.42	51.85	40.93	42.40	29.55	50.00	53.58	54.26	24.65	23.42	30.53	29.11	28.02	31.25	29.14	38.33	32.73	50.94	44.35	50.60	29.33	22.45	26.21	26.92	27.18	30.21	27.68	36.61	8.93	0.538460	0.810127
K	jcn_only_AA	HSF1,TACC1	chr8	+	chr8:38697786-38699807	chr8:38697786-38699804		chr8:38699805-38699807	chr8:38699807-38699808		100.00	94.12	100.00	NA	NA	NA	98.78	96.00	100.00	96.97	98.70	97.22	97.12	100.00	96.88	97.78	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.88	100.00	NA	100.00	NA	100.00	95.00	90.91	96.55	95.12	100.00	95.62	100.00	4.38	0.128555	0.663989
N	alternative_donor	MVD	chr16	-	chr16:88723991-88724121;chr16:88723991-88724142	chr16:88723991-88724322		chr16:88724122-88724142;chr16:88724143-88724322	chr16:88724142-88724143;chr16:88724322-88724323		95.45	92.68	92.00	100.00	92.31	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.59	100.00	100.00	NA	100.00	86.67	97.83	95.65	89.19	100.00	88.89	95.00	92.31	100.00	92.86	100.00	88.89	88.89	100.00	100.00	94.74	92.00	100.00	95.22	-4.78	0.411779	0.675004
N	cassette	AP5Z1	chr7	+	chr7:4829561-4830440	chr7:4829561-4829844;chr7:4830223-4830440		chr7:4829845-4830222			100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	94.12	100.00	91.30	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.97	88.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	CD6,PLCB3	chr11	+	chr11:64029549-64029878	chr11:64029549-64029657		chr11:64029658-64029878	chr11:64029878-64029879		16.67	25.81	22.73	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.00	2.13	NA	NA	29.17	5.88	16.67	10.53	NA	16.67	21.05	10.42	0.00	5.26	NA	26.67	23.08	NA	11.11	12.82	21.05	8.34	18.86	10.52	0.568136	0.833904
N	alternative_acceptor	ID2	chr2	+	chr2:8823037-8823814	chr2:8823037-8823246		chr2:8823247-8823814	chr2:8823814-8823815		8.89	3.45	8.33	0.95	3.05	1.49	0.62	1.85	1.09	0.35	0.65	0.30	0.77	1.37	2.13	0.99	0.91	0.59	1.92	8.18	4.55	4.06	5.04	5.36	NA	6.04	6.52	3.31	4.44	2.88	15.06	9.84	3.57	4.37	4.50	4.42	1.92	7.11	5.19	0.068035	0.584083
K	intron_retention	DEGS1	chr1	+	chr1:224380221-224380597				chr1:224380220-224380221;chr1:224380597-224380598		100.00	100.00	96.91	100.00	96.38	95.65	95.10	95.65	96.51	94.41	100.00	100.00	96.99	100.00	100.00	100.00	95.45	100.00	100.00	100.00	97.14	92.63	93.75	94.19	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	96.52	94.40	95.69	100.00	100.00	0.00	0.866203	1.000000
N	intron_retention		chr14	+	chr14:91691284-91691451				chr14:91691283-91691284;chr14:91691451-91691452		86.21	100.00	100.00	100.00	89.58	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	87.50	100.00	NA	97.44	100.00	91.15	95.83	88.57	100.00	100.00	91.67	88.50	100.00	100.00	NA	100.00	88.89	100.00	100.00	95.19	100.00	100.00	91.67	97.59	95.83	-1.77	0.898444	1.000000
N	alternative_donor	ELL2	chr5	-	chr5:95224835-95226806	chr5:95224835-95225894		chr5:95225895-95226806	chr5:95226806-95226807		17.83	6.25	24.37	5.45	3.45	1.59	1.96	2.08	1.79	1.46	2.76	2.12	4.55	1.49	3.46	3.03	3.01	1.75	NA	14.18	1.92	18.72	16.33	24.10	0.00	12.07	14.77	5.22	6.25	3.75	12.73	18.86	0.00	18.50	19.85	22.02	1.96	12.40	10.44	0.041812	0.375646
K	intron_retention		chr17	-	chr17:80210481-80210891				chr17:80210480-80210481;chr17:80210891-80210892		5.48	0.00	7.37	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	1.43	0.00	NA	1.12	4.05	0.00	0.00	0.00	3.39	2.38	0.00	1.19	2.82	0.86	0.00	2.12	2.12	0.141947	1.000000
N	alternative_donor	RRAS	chr19	-	chr19:50140388-50143202	chr19:50140388-50141046		chr19:50141047-50143202	chr19:50143202-50143203		0.95	4.26	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	1.03	0.78	0.00	1.27	0.00	5.26	0.75	1.61	0.00	1.20	0.00	1.23	0.93	0.00	0.00	2.22	0.00	1.25	0.85	-0.40	0.227828	0.597907
N	jcn_only_AA	FCGR2A	chr1	+	chr1:161476382-161479609;chr1:161476382-161479429	chr1:161476382-161477388		chr1:161477389-161479429;chr1:161479430-161479609	chr1:161479429-161479430;chr1:161479609-161479610		0.23	0.00	0.00	5.88	0.00	28.57	0.00	0.00	0.00	0.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.190123	0.663989
N	jcn_only_AD	ZMAT5	chr22	-	chr22:30127344-30134318	chr22:30127344-30127516		chr22:30127517-30134318	chr22:30134318-30134319		0.00	0.00	0.00	NA	0.00	0.00	5.56	0.00	NA	0.00	4.26	NA	2.78	4.17	12.50	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.569052	0.782445
N	jcn_only_AA	SNHG1	chr11	-	chr11:62620154-62620282;chr11:62620131-62620282	chr11:62620139-62620282		chr11:62620131-62620138;chr11:62620139-62620153	chr11:62620130-62620131;chr11:62620138-62620139		0.00	0.00	6.25	0.00	11.54	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	6.67	0.00	8.00	5.77	8.00	0.00	0.00	0.00	11.11	2.86	0.00	0.00	9.52	0.00	6.06	7.69	9.52	0.00	0.00	0.00	0.391002	0.663989
N	alternative_acceptor	EEF1D	chr8	-	chr8:144662928-144663223;chr8:144662898-144663223	chr8:144662803-144663223		chr8:144662803-144662897;chr8:144662898-144662927	chr8:144662802-144662803;chr8:144662897-144662898		5.58	4.40	4.08	4.20	4.78	5.98	3.69	0.00	2.39	3.17	4.05	0.00	3.16	0.00	4.64	3.40	0.00	0.00	8.26	8.98	7.04	6.05	5.79	7.02	5.13	4.19	4.56	4.98	4.65	5.35	10.32	7.81	9.19	5.24	5.37	4.40	4.77	4.88	0.12	0.709041	0.890280
N	jcn_only_AD	ERCC1	chr19	-	chr19:55757047-55758266	chr19:55757047-55758244		chr19:55758245-55758266	chr19:55758266-55758267		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.33	93.33	100.00	100.00	97.56	96.15	NA	97.37	NA	100.00	95.24	100.00	93.75	100.00	100.00	100.00	95.00	NA	100.00	100.00	NA	100.00	94.12	100.00	98.66	100.00	1.34	0.725586	0.857936
N	alternative_donor	ZBTB48	chr1	+	chr1:6648257-6648337	chr1:6648262-6648337		chr1:6648257-6648261	chr1:6648256-6648257		5.71	0.00	0.00	0.00	1.54	0.00	0.00	NA	NA	NA	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	1.49	0.00	4.08	0.00	3.23	NA	0.00	0.00	1.79	9.09	2.63	NA	0.00	4.65	1.82	0.00	0.00	NA	0.00	0.00	0.00	0.589036	0.799662
K	jcn_only_AD	EMC4	chr15	+	chr15:34517852-34519893	chr15:34517860-34519893		chr15:34517852-34517859	chr15:34517851-34517852		0.00	13.16	2.35	0.00	4.26	7.14	0.00	2.17	3.61	3.57	3.41	1.41	1.96	0.00	4.82	3.95	2.33	0.00	0.00	0.00	7.55	6.38	3.23	1.89	NA	2.08	1.22	0.00	5.56	1.69	4.55	6.25	0.00	1.33	3.23	4.71	0.00	1.04	1.04	0.586582	0.793484
K	alternative_last_exon	SP100	chr2	+	chr2:231375882-231378052,chr2:231375882-231385141;chr2:231375882-231403981	chr2:231375882-231379809	chr2:231403982-231404097	chr2:231379810-231381242			70.00	100.00	54.29	NA	92.86	96.00	22.22	19.35	20.69	20.00	20.00	23.81	21.74	21.88	28.12	NA	23.53	20.83	100.00	61.90	90.48	NA	76.47	70.37	NA	47.22	65.52	66.67	69.23	62.50	55.56	61.76	100.00	57.14	60.00	60.87	100.00	51.39	-48.61	0.321014	0.521724
N	alternative_acceptor	ARRDC1,IFT74	chr9	+	chr9:27060650-27062615	chr9:27060650-27061993		chr9:27061994-27062615	chr9:27062615-27062616		5.13	0.00	6.25	NA	0.00	0.00	NA	8.33	0.00	NA	NA	NA	0.00	0.00	9.09	NA	NA	NA	0.00	4.76	0.00	NA	NA	NA	0.00	3.57	0.00	NA	0.00	9.09	0.00	0.00	0.00	NA	0.00	5.56	0.00	4.17	4.17	0.039876	0.560254
N	alternative_donor	FGD2	chr6	+	chr6:36993985-36995204;chr6:36993715-36995204;chr6:36995111-36995204	chr6:36994102-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		5.50	0.00	NA	NA	NA	NA	0.00	0.76	0.00	NA	0.00	7.69	0.00	3.05	0.00	0.00	0.00	3.85	0.00	3.70	NA	NA	0.00	3.23	NA	7.81	NA	4.00	0.00	5.00	3.85	0.00	0.00	0.00	0.00	4.17	0.00	3.78	3.78	0.008165	0.211749
N	jcn_only_AD	NDUFS3	chr11	+	chr11:47593296-47602076;chr11:47600887-47602076	chr11:47600891-47602076					0.00	7.29	9.09	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	4.35	1.10	7.69	4.00	0.00	0.00	0.00	9.62	12.00	0.00	9.09	0.00	13.33	0.00	0.00	5.13	0.00	4.00	0.00	13.04	16.67	5.17	8.33	0.00	15.62	3.13	3.85	0.71	0.614654	0.809875
N	cassette	ANAPC16	chr10	+	chr10:73980138-73990123;chr10:73975831-73990123;chr10:73975897-73990123	chr10:73980138-73983645,chr10:73975897-73983645,chr10:73975831-73983645;chr10:73983815-73990123		chr10:73983646-73983814			88.64	82.22	85.96	100.00	91.78	100.00	78.89	95.83	79.25	82.93	85.48	90.32	79.82	86.96	80.91	82.54	78.46	100.00	78.46	93.33	84.85	92.31	91.25	100.00	89.36	96.00	93.83	95.83	85.54	100.00	88.46	82.72	84.38	92.16	94.94	96.72	81.02	90.98	9.97	0.002684	0.171909
K	alternative_acceptor	OTUB1,SCYL1	chr11	+	chr11:65304600-65305282	chr11:65304600-65305279		chr11:65305280-65305282	chr11:65305282-65305283		81.25	73.91	66.67	83.33	77.50	84.21	84.00	84.62	87.10	79.07	83.87	84.00	89.66	90.48	83.33	82.05	86.11	85.71	80.36	83.33	78.26	80.00	78.05	84.00	80.49	84.00	75.00	83.33	81.08	86.84	82.93	77.36	81.13	81.82	68.75	83.33	80.81	83.66	2.85	0.281959	0.709013
N	alternative_first_exon	ELL	chr19	-	chr19:18583693-18583832,chr19:18583693-18588152,chr19:18583693-18588281,chr19:18583693-18592443,chr19:18583693-18612419,chr19:18583693-18626095,chr19:18583693-18627694;chr19:18583693-18643473;chr19:18583693-18586623	chr19:18583693-18632730	chr19:18643474-18643624;chr19:18586624-18586743	chr19:18632731-18632937			93.75	100.00	100.00	NA	NA	NA	95.45	97.83	96.67	98.28	95.45	98.04	100.00	95.00	100.00	98.31	96.67	97.44	NA	95.24	NA	100.00	95.00	95.00	100.00	95.92	95.45	100.00	100.00	97.14	85.71	91.30	NA	92.86	95.45	95.35	100.00	95.12	-4.88	0.044241	0.158212
K	jcn_only_AA	MGRN1,TCF25	chr16	+	chr16:4714777-4715102	chr16:4714777-4715099		chr16:4715100-4715102	chr16:4715102-4715103		0.00	8.70	11.90	NA	NA	NA	6.38	7.32	12.07	11.11	12.20	15.00	8.51	9.09	14.89	14.00	11.11	0.00	NA	19.23	NA	8.33	12.00	11.54	19.23	9.09	4.35	7.69	NA	15.38	22.22	11.76	NA	6.25	17.65	13.21	8.61	9.09	0.48	0.920847	0.973729
N	jcn_only_AA	SETX	chr9	-	chr9:135150243-135150642;chr9:135150246-135150642	chr9:135147196-135150642		chr9:135147196-135150242;chr9:135150243-135150245	chr9:135147195-135147196;chr9:135150242-135150243		100.00	100.00	100.00	NA	100.00	NA	100.00	96.49	100.00	100.00	100.00	100.00	98.00	94.44	100.00	100.00	91.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.335542	0.663989
K	alternative_donor	PPIA	chr7	+	chr7:44838414-44838845	chr7:44838504-44838845		chr7:44838414-44838503	chr7:44838413-44838414		66.67	66.67	51.43	63.64	52.63	NA	64.71	42.11	30.00	38.89	52.63	60.00	55.56	39.29	36.07	45.45	40.00	41.18	35.71	54.55	54.55	76.47	66.67	58.33	NA	53.33	65.38	58.82	66.67	53.85	53.85	58.82	41.67	65.22	59.09	64.00	55.56	53.59	-1.97	0.871745	0.968901
N	alternative_donor	ARPC3	chr12	-	chr12:110874010-110874469;chr12:110874010-110874351	chr12:110874010-110874361		chr12:110874352-110874361;chr12:110874362-110874469	chr12:110874361-110874362;chr12:110874469-110874470		94.57	95.06	96.06	95.04	96.12	95.53	99.15	99.04	98.90	98.63	97.35	98.06	98.47	98.59	98.75	98.44	97.49	97.14	93.40	93.48	97.40	94.21	94.25	94.26	94.69	96.99	95.84	96.97	97.87	97.76	91.89	90.89	91.42	94.55	94.41	95.04	94.88	95.78	0.91	0.820047	0.942369
N	alternative_acceptor	SPG7	chr16	+	chr16:89620972-89622328;chr16:89620972-89623294	chr16:89620972-89622285		chr16:89622286-89622328;chr16:89622329-89623294	chr16:89622328-89622329;chr16:89623294-89623295		0.00	2.44	2.56	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.33	0.00	8.00	10.00	2.94	0.00	0.00	10.00	0.00	2.78	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.799328	0.925595
K	intron_retention		chr11	-	chr11:45931864-45932448				chr11:45931863-45931864;chr11:45932448-45932449		6.67	6.45	10.53	2.33	7.69	2.94	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.06	0.00	1.72	0.00	6.25	6.25	4.95	4.17	0.00	0.00	4.76	2.78	7.50	4.44	4.48	0.00	0.00	0.00	4.71	2.08	-2.63	0.318401	1.000000
K	intron_retention	IRF7	chr11	-	chr11:613118-613205				chr11:613117-613118;chr11:613205-613206		11.09	17.39	10.29	13.57	13.33	12.14	11.76	1.82	1.76	2.33	0.00	3.03	3.03	1.89	3.14	6.61	5.26	1.81	24.39	11.66	17.49	21.84	14.29	12.46	11.11	7.53	14.84	14.66	8.00	10.94	19.98	22.41	24.73	18.75	23.08	15.35	14.57	9.31	-5.26	0.350288	1.000000
K	jcn_only_AA	NGDN,RP11-371E8.4,UBR7	chr14	+	chr14:23946770-23978548	chr14:23946770-23947215		chr14:23947216-23978548	chr14:23978548-23978549		100.00	100.00	92.00	100.00	100.00	97.96	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.53	100.00	97.83	97.22	94.59	100.00	100.00	100.00	93.10	100.00	100.00	97.87	100.00	97.73	100.00	100.00	100.00	97.37	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AA	TNK2	chr3	-	chr3:195597250-195599146;chr3:195597276-195599146	chr3:195597077-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		92.59	84.00	96.30	NA	NA	NA	100.00	94.44	95.56	NA	100.00	NA	100.00	100.00	97.78	100.00	100.00	NA	NA	92.31	NA	NA	92.00	100.00	100.00	94.83	100.00	100.00	100.00	NA	100.00	100.00	NA	82.35	NA	96.15	100.00	94.63	-5.37	0.946367	0.981281
N	cassette	HM13	chr20	+	chr20:30154099-30156922;chr20:30149540-30156922	chr20:30154099-30155880,chr20:30149540-30155880;chr20:30156084-30156922		chr20:30155881-30156083			6.07	2.62	6.43	3.66	3.64	2.93	2.92	4.58	6.45	3.16	2.73	3.53	3.03	8.06	5.80	3.11	3.13	3.16	2.67	5.46	4.78	3.88	4.05	4.38	1.85	7.22	6.53	2.89	3.12	3.93	7.00	7.41	2.83	3.64	3.10	4.85	2.75	6.54	3.79	0.000450	0.068814
K	intron_retention	PINK1	chr1	+	chr1:20975126-20975487				chr1:20975125-20975126;chr1:20975487-20975488		5.26	7.61	5.88	0.00	3.64	NA	2.26	0.00	0.00	2.86	4.17	7.69	5.05	0.00	5.26	13.04	8.51	7.14	5.56	10.71	7.58	25.00	9.52	20.00	0.00	0.00	6.52	8.33	4.26	6.25	13.33	12.31	4.17	16.67	9.38	21.74	4.61	2.63	-1.98	0.923390	1.000000
K	intron_retention	PTOV1	chr19	+	chr19:50361372-50361805				chr19:50361371-50361372;chr19:50361805-50361806		10.13	7.10	12.20	3.57	3.25	0.00	1.47	4.17	0.00	0.00	2.70	0.00	6.56	0.00	5.26	0.00	2.38	0.00	3.70	13.04	4.42	17.14	7.87	8.00	4.66	9.76	8.25	5.00	6.41	2.17	13.95	13.89	4.17	16.28	17.91	7.14	4.42	9.95	5.53	0.459472	1.000000
N	alternative_first_exon	LIME1,RP4-583P15.15	chr20	+	chr20:62367539-62368885;chr20:62365092-62368885,chr20:62365128-62368885	chr20:62368065-62368885	chr20:62364939-62365091	chr20:62367133-62368064			95.00	93.75	100.00	97.67	92.31	99.24	90.00	NA	100.00	100.00	90.00	NA	90.91	NA	100.00	100.00	100.00	NA	92.86	95.45	100.00	95.00	94.29	100.00	87.34	90.48	92.86	100.00	95.83	100.00	100.00	87.76	98.41	100.00	95.65	100.00	91.88	95.22	3.34	0.266597	0.480956
K	intron_retention		chr1	+	chr1:68151810-68152032				chr1:68151809-68151810;chr1:68152032-68152033		2.04	2.56	4.86	11.76	NA	0.00	0.00	0.00	0.75	0.00	NA	2.27	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	3.75	6.98	5.88	4.44	10.00	0.00	2.38	NA	9.09	3.23	10.00	6.28	12.12	3.70	8.11	5.08	1.28	0.00	-1.28	0.954886	1.000000
K	jcn_only_AA	FES	chr15	+	chr15:91436425-91436520	chr15:91436425-91436501		chr15:91436502-91436520	chr15:91436520-91436521		16.98	13.58	13.64	7.69	11.11	19.05	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	5.26	13.33	10.00	10.00	6.06	NA	6.38	0.00	8.00	NA	0.00	NA	8.33	8.33	8.82	15.38	10.00	6.06	5.82	8.33	2.51	0.627993	0.836323
K	intron_retention	YME1L1	chr10	-	chr10:27405063-27405147				chr10:27405062-27405063;chr10:27405147-27405148		2.01	0.00	2.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.09	0.00	0.99	0.00	0.62	0.00	1.59	0.00	0.00	0.00	0.00	6.00	5.00	9.38	1.81	1.55	0.67	0.00	1.80	1.80	0.916580	1.000000
K	intron_retention		chr6	+	chr6:44121581-44121809				chr6:44121580-44121581;chr6:44121809-44121810		7.50	0.00	7.37	4.88	3.85	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.38	1.85	5.13	9.76	2.80	0.00	2.04	3.12	0.00	6.06	2.55	4.26	5.77	6.67	7.32	0.00	6.04	0.00	3.15	3.15	0.628876	1.000000
K	intron_retention		chr19	+	chr19:3532094-3532414				chr19:3532093-3532094;chr19:3532414-3532415		2.78	4.35	10.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	5.26	0.00	5.26	5.13	9.09	0.00	4.76	4.00	0.00	0.00	0.00	4.44	8.00	0.00	5.26	0.00	6.82	0.00	3.61	3.61	0.937462	1.000000
K	cassette	TNK2	chr3	-	chr3:195595581-195596984	chr3:195595581-195596367;chr3:195596413-195596984		chr3:195596368-195596412			9.52	10.00	4.76	NA	NA	NA	5.56	8.00	8.70	NA	18.18	NA	13.33	5.17	4.35	NA	5.00	NA	NA	10.53	NA	NA	0.00	NA	0.00	7.84	5.26	NA	NA	NA	8.33	0.00	NA	20.00	5.88	0.00	7.78	8.16	0.38	0.754717	0.922543
K	cassette	PCK2	chr14	+	chr14:24567888-24568766	chr14:24567888-24568257;chr14:24568446-24568766		chr14:24568258-24568445			100.00	100.00	86.36	NA	100.00	NA	100.00	100.00	100.00	100.00	96.97	100.00	100.00	99.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	98.72	96.77	NA	100.00	NA	95.24	100.00	100.00	100.00	100.00	100.00	100.00	99.56	-0.44	0.187026	0.709176
K	intron_retention	TYK2	chr19	-	chr19:10467395-10468439				chr19:10467394-10467395;chr19:10468439-10468440		7.55	0.00	12.66	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	11.43	0.00	0.00	0.00	NA	10.53	8.33	NA	5.00	7.69	NA	9.09	9.72	0.00	3.33	0.00	8.33	10.91	13.33	3.70	8.89	10.71	0.00	7.94	7.94	0.653101	1.000000
K	intron_retention		chr19	+	chr19:49375909-49376481				chr19:49375908-49375909;chr19:49376481-49376482		6.03	14.29	6.82	0.00	0.00	NA	0.00	0.88	0.00	0.87	1.79	0.78	0.00	0.75	0.83	0.48	0.65	0.60	10.00	5.59	9.09	1.37	2.58	1.34	NA	1.15	0.00	1.64	1.39	1.53	8.51	9.78	16.67	2.76	5.17	1.06	10.00	3.37	-6.63	0.969911	1.000000
N	cassette	RIT1	chr1	-	chr1:155880298-155880668;chr1:155880298-155881033;chr1:155880298-155881062	chr1:155880298-155880446;chr1:155880596-155881062,chr1:155880596-155881033,chr1:155880596-155880668		chr1:155880447-155880595			87.30	100.00	93.20	89.47	96.30	NA	92.11	92.25	92.05	87.97	89.47	86.67	96.00	91.79	90.23	89.49	85.82	78.12	100.00	89.80	93.02	92.94	93.75	92.73	100.00	92.81	91.92	95.51	85.90	84.48	93.75	91.73	90.00	93.06	91.67	95.59	98.00	92.02	-5.98	0.040042	0.500342
K	alternative_acceptor	BRD2	chr6	+	chr6:32944714-32945193;chr6:32944714-32945036	chr6:32944714-32945218		chr6:32945037-32945193;chr6:32945194-32945218	chr6:32945193-32945194;chr6:32945218-32945219		92.26	98.08	91.98	86.67	84.85	NA	96.00	94.81	94.81	96.59	96.00	97.44	96.15	92.52	93.46	94.27	96.40	100.00	NA	94.01	96.67	92.36	91.02	95.57	NA	92.52	92.48	90.91	88.24	91.30	96.55	95.80	100.00	94.84	92.27	96.08	97.12	93.27	-3.85	0.017590	0.508745
K	jcn_only_AD	RTF1	chr15	+	chr15:41730630-41745098	chr15:41732532-41745098					0.00	0.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	7.69	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.373901	0.657607
N	intron_retention		chr19	+	chr19:2271954-2272741				chr19:2271953-2271954;chr19:2272741-2272742		87.50	100.00	90.48	NA	100.00	50.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	65.85	81.25	69.57	NA	77.78	NA	74.29	84.62	83.33	NA	NA	NA	83.33	82.76	82.69	NA	69.23	70.59	78.49	83.97	5.48	0.935641	1.000000
N	jcn_only_AA	NFKBIA	chr14	-	chr14:35871867-35871976;chr14:35871741-35871976;chr14:35871895-35871976	chr14:35871870-35871976		chr14:35871741-35871866;chr14:35871867-35871869;chr14:35871870-35871894	chr14:35871740-35871741;chr14:35871866-35871867;chr14:35871869-35871870		96.14	94.44	96.17	94.35	95.30	92.44	93.90	96.04	95.47	95.66	95.78	94.42	94.02	95.21	95.10	96.18	94.65	95.01	92.07	94.89	91.71	95.69	95.39	95.84	100.00	96.17	95.14	94.59	95.43	94.77	93.98	93.95	91.88	96.44	96.26	95.98	93.96	95.62	1.66	0.448672	0.712502
K	intron_retention	RP4-635E18.9,TARDBP	chr1	+	chr1:11083387-11083923				chr1:11083386-11083387;chr1:11083923-11083924		98.48	100.00	100.00	96.70	99.21	96.43	100.00	100.00	100.00	97.22	100.00	100.00	98.39	100.00	97.56	100.00	100.00	100.00	95.97	95.92	100.00	96.55	100.00	97.06	99.22	93.75	96.55	98.46	98.06	95.38	97.50	100.00	94.33	100.00	98.70	100.00	98.81	97.99	-0.81	0.632243	1.000000
N	alternative_donor	SIGLEC9	chr19	+	chr19:51631768-51639218	chr19:51633383-51639218		chr19:51631768-51633382	chr19:51631767-51631768		83.33	100.00	82.35	83.33	76.19	NA	50.00	61.11	NA	66.67	82.35	66.67	50.00	52.63	NA	52.94	63.41	45.45	91.30	70.00	60.87	66.67	73.33	NA	78.95	NA	66.67	66.67	67.74	64.29	NA	NA	94.12	NA	64.00	NA	85.12	65.56	-19.57	0.371540	0.650093
N	cassette	PDXK	chr21	+	chr21:45148892-45153949;chr21:45139263-45153949	chr21:45139263-45152019,chr21:45148892-45152019;chr21:45152324-45153949		chr21:45152020-45152323			1.52	0.00	1.72	0.00	1.52	0.00	1.90	1.39	0.00	1.06	2.58	0.00	1.56	0.74	1.85	2.42	1.79	0.00	0.00	2.04	0.00	2.70	2.44	6.90	3.70	1.49	2.63	0.00	2.74	0.00	2.33	3.33	4.26	3.66	3.88	1.35	1.73	1.50	-0.23	0.692888	0.887109
N	cassette	CORO1B	chr11	-	chr11:67207911-67208803	chr11:67207911-67208595;chr11:67208716-67208803		chr11:67208596-67208715			98.01	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	97.96	98.39	100.00	97.78	100.00	97.64	100.00	100.00	97.89	100.00	100.00	100.00	97.93	100.00	96.08	91.89	99.26	99.39	97.62	100.00	100.00	97.40	100.00	99.63	-0.37	0.462570	0.759640
N	jcn_only_AD	MRAS	chr3	+	chr3:138117415-138119375;chr3:138118639-138119375	chr3:138117411-138119375		chr3:138117411-138117414;chr3:138117415-138118638	chr3:138117410-138117411;chr3:138117414-138117415		100.00	NA	91.43	NA	86.67	NA	93.33	92.78	95.31	86.67	93.10	92.21	91.89	94.83	100.00	95.15	94.53	94.64	100.00	97.62	96.77	100.00	96.43	91.55	NA	92.00	89.66	90.00	93.33	96.55	95.74	100.00	100.00	94.38	95.06	96.05	96.66	95.28	-1.38	0.757034	0.875339
K	intron_retention	PCK2	chr14	+	chr14:24572465-24573050				chr14:24572464-24572465;chr14:24573050-24573051		83.56	86.67	85.19	81.82	80.00	81.25	78.85	85.29	80.00	76.47	78.26	82.35	89.23	85.71	85.37	83.33	73.91	84.62	78.31	74.32	82.11	NA	86.49	NA	83.51	81.08	91.18	93.75	78.43	83.33	77.78	73.33	77.42	77.78	83.33	80.00	81.18	82.32	1.14	0.974229	1.000000
N	cassette	GMIP	chr19	-	chr19:19751381-19752784	chr19:19751381-19752618;chr19:19752677-19752784		chr19:19752619-19752676			97.87	100.00	95.00	NA	NA	NA	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.62	NA	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	NA	100.00	91.43	NA	100.00	97.50	100.00	100.00	100.00	0.00	0.487880	0.774715
N	alternative_acceptor	EEF1D	chr8	-	chr8:144662928-144663223;chr8:144662803-144663223	chr8:144662898-144663223		chr8:144662803-144662897;chr8:144662898-144662927	chr8:144662802-144662803;chr8:144662897-144662898		94.05	95.30	95.30	95.62	94.99	93.74	96.31	100.00	97.61	96.83	95.95	100.00	96.84	100.00	95.00	96.60	100.00	100.00	91.45	90.42	92.59	93.49	94.21	92.54	94.44	95.81	95.17	94.66	95.35	94.65	88.26	91.67	90.25	94.41	94.30	95.35	94.87	94.93	0.06	0.778553	0.917646
K	cassette	NQO1	chr16	-	chr16:69745185-69748866;chr16:69745185-69752025	chr16:69745185-69746930;chr16:69747033-69748866,chr16:69747033-69752025		chr16:69746931-69747032			90.91	94.17	90.00	80.91	85.03	84.62	88.68	100.00	93.10	92.41	93.81	89.13	93.06	97.67	89.58	90.28	94.19	85.90	81.00	89.47	84.78	83.42	88.34	90.38	100.00	91.67	70.00	87.58	87.06	92.31	86.44	78.38	90.38	87.83	88.17	88.56	91.72	91.29	-0.43	0.666929	0.878382
N	jcn_only_AA	DENND2D	chr1	-	chr1:111731876-111734761	chr1:111733688-111734761		chr1:111731876-111733687	chr1:111731875-111731876		7.32	0.00	0.00	11.11	0.00	28.57	0.00	5.41	0.00	1.30	0.00	3.64	0.00	0.00	0.00	3.77	0.00	0.00	NA	12.00	0.00	15.00	0.00	10.00	NA	0.00	0.00	6.12	0.00	4.30	12.00	0.00	10.00	4.00	8.00	12.99	0.00	6.37	6.37	0.313565	0.663989
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67810965-67811020;chr11:67810965-67811037	chr11:67810965-67811088		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		0.00	0.00	1.85	NA	0.00	NA	5.81	0.00	0.00	0.00	3.23	0.00	6.41	4.17	0.00	4.08	3.95	7.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	3.45	0.00	14.29	2.63	1.92	NA	0.00	0.00	0.00	2.90	0.00	-2.90	0.372089	0.709013
N	jcn_only_AA	RASAL3	chr19	-	chr19:15565374-15565467	chr19:15565390-15565467		chr19:15565374-15565389	chr19:15565373-15565374		6.25	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	EPHX1	chr1	+	chr1:226030176-226032198				chr1:226030175-226030176;chr1:226032198-226032199		14.63	1.09	12.28	0.00	0.36	0.00	2.61	18.75	11.11	3.97	5.06	0.84	5.10	16.00	10.64	3.12	7.37	4.55	0.00	15.62	0.00	0.00	0.81	0.81	0.00	13.95	8.77	1.75	0.71	0.00	2.82	4.48	0.24	0.57	2.62	1.21	0.67	15.12	14.46	0.019422	1.000000
K	jcn_only_AD	WIPI2	chr7	+	chr7:5269337-5270465	chr7:5269370-5270465		chr7:5269337-5269369	chr7:5269336-5269337		48.44	39.50	52.05	51.43	52.22	48.21	56.07	46.77	50.57	59.65	62.81	48.48	50.47	60.00	48.91	58.93	60.43	58.33	50.56	52.00	48.91	54.55	57.50	41.67	55.65	50.00	52.81	53.33	63.51	60.71	50.72	43.48	44.66	49.02	55.07	44.62	50.52	50.36	-0.16	0.583625	0.791676
N	jcn_only_AA	C19orf66	chr19	+	chr19:10202030-10202282;chr19:10202030-10202151;chr19:10202030-10202164;chr19:10202030-10202135	chr19:10202030-10202259		chr19:10202136-10202151;chr19:10202152-10202164;chr19:10202165-10202259;chr19:10202260-10202282	chr19:10202151-10202152;chr19:10202164-10202165;chr19:10202259-10202260;chr19:10202282-10202283		5.45	0.00	0.00	NA	0.00	5.45	25.00	7.41	11.11	12.50	20.00	8.96	5.26	7.50	8.93	10.71	13.64	21.43	0.00	6.15	6.67	NA	NA	2.22	NA	0.00	0.00	8.00	NA	8.70	6.78	6.67	NA	0.00	NA	0.00	2.63	6.46	3.83	0.759505	0.892526
K	intron_retention	TMEM179B	chr11	+	chr11:62556899-62557072				chr11:62556898-62556899;chr11:62557072-62557073		2.75	7.25	2.72	0.00	3.74	0.00	0.00	0.00	0.00	0.00	0.77	1.52	0.00	0.00	1.39	0.00	0.81	0.00	1.33	1.28	2.08	2.44	4.63	5.36	4.65	0.00	3.81	3.03	3.66	4.65	2.70	3.70	2.15	1.96	6.25	3.53	1.74	0.64	-1.10	0.971576	1.000000
K	intron_retention	RP11-44M6.7,SAP25	chr7	-	chr7:100170195-100170276				chr7:100170194-100170195;chr7:100170276-100170277		9.76	3.30	0.00	0.00	2.00	0.00	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	1.80	7.14	2.35	NA	2.22	NA	0.00	4.88	3.33	0.00	2.56	0.00	3.64	5.97	1.40	NA	0.00	0.00	1.40	6.01	4.61	0.262618	1.000000
N	jcn_only_AA	POMT1,URM1	chr9	+	chr9:131140386-131150094	chr9:131140386-131149861		chr9:131149862-131150094	chr9:131150094-131150095		0.00	0.00	0.00	NA	0.00	NA	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.293390	0.663989
K	cassette	RP11-1012A1.4,VTI1B	chr14	-	chr14:68126640-68141091	chr14:68126640-68129193;chr14:68129253-68141091		chr14:68129194-68129252			100.00	100.00	93.94	100.00	100.00	100.00	98.79	98.63	92.77	100.00	98.26	97.00	96.60	93.24	97.50	97.87	98.91	100.00	100.00	100.00	96.00	97.22	97.67	100.00	100.00	95.74	93.85	100.00	99.16	97.92	100.00	96.67	100.00	94.12	97.85	96.97	100.00	99.31	-0.69	0.345850	0.709176
N	jcn_only_AA	TRMT5	chr14	-	chr14:61441913-61442192;chr14:61441901-61442192	chr14:61441933-61442192		chr14:61441901-61441912;chr14:61441913-61441932	chr14:61441900-61441901;chr14:61441912-61441913		5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	NAGK	chr2	+	chr2:71302737-71303733;chr2:71302773-71303733	chr2:71302741-71303733		chr2:71302737-71302740;chr2:71302741-71302772	chr2:71302736-71302737;chr2:71302740-71302741		6.60	2.61	4.62	6.25	4.19	4.90	5.23	4.55	1.49	4.65	3.16	2.00	3.56	5.26	3.77	5.62	4.88	2.44	6.30	10.36	6.49	3.70	5.24	6.25	4.33	5.94	3.49	3.77	3.14	2.73	10.79	8.96	6.78	4.63	4.02	1.84	4.78	6.27	1.49	0.089429	0.632469
N	jcn_only_AA		chr2	+	chr2:201994870-201995643;chr2:201994870-201997821	chr2:201994870-201997751		chr2:201995644-201997751;chr2:201997752-201997821	chr2:201997751-201997752;chr2:201997821-201997822		94.87	100.00	96.36	100.00	100.00	100.00	100.00	98.96	100.00	98.73	100.00	99.21	100.00	97.91	99.55	99.69	100.00	99.34	NA	96.41	100.00	99.32	100.00	98.87	NA	97.64	100.00	98.88	100.00	100.00	97.41	100.00	100.00	97.96	100.00	98.09	100.00	97.53	-2.47	0.004569	0.450187
K	intron_retention		chr17	+	chr17:4647763-4647919				chr17:4647762-4647763;chr17:4647919-4647920		6.56	0.00	13.89	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	NA	NA	0.00	0.00	NA	9.09	NA	0.00	9.80	12.50	18.75	4.35	0.00	8.00	8.20	11.11	9.09	7.69	5.56	0.00	3.28	3.28	0.941932	1.000000
N	alternative_donor	AMZ2P1	chr17	-	chr17:62964500-62967040;chr17:62964500-62968651	chr17:62964500-62968435		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		9.52	1.41	6.67	3.45	2.38	0.00	0.00	0.00	0.00	NA	0.00	NA	4.00	10.00	7.69	0.00	0.00	NA	5.36	9.09	4.35	7.14	5.41	0.00	2.70	3.85	4.55	0.00	0.00	0.00	0.00	6.12	3.77	9.09	8.82	4.17	3.24	6.47	3.23	0.266584	0.644710
K	intron_retention	SIPA1	chr11	+	chr11:65416952-65417031				chr11:65416951-65416952;chr11:65417031-65417032		0.74	1.06	1.38	0.00	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	1.12	0.00	3.57	0.00	0.00	0.89	0.00	4.35	0.00	0.00	2.06	1.31	1.71	6.67	0.00	1.41	0.00	0.81	0.81	0.850508	1.000000
N	jcn_only_AA	NFKBIA	chr14	-	chr14:35871867-35871976;chr14:35871870-35871976;chr14:35871895-35871976	chr14:35871741-35871976		chr14:35871741-35871866;chr14:35871867-35871869;chr14:35871870-35871894	chr14:35871740-35871741;chr14:35871866-35871867;chr14:35871869-35871870		3.86	5.56	3.80	5.65	4.70	7.56	6.10	3.96	4.53	4.34	4.22	5.58	5.98	4.79	4.90	3.82	5.35	4.99	7.93	5.11	8.12	4.25	4.61	4.11	0.00	3.83	4.86	5.41	4.57	5.23	5.88	5.99	8.12	3.56	3.74	4.01	6.04	4.38	-1.67	0.437599	0.704827
K	alternative_donor	HNRNPA1	chr12	+	chr12:54678102-54680445	chr12:54679897-54680445		chr12:54678102-54679896	chr12:54678101-54678102		72.73	69.03	65.82	60.94	68.93	63.03	75.34	66.67	66.67	84.71	92.05	88.46	77.17	62.50	66.10	77.30	93.40	92.06	54.76	55.10	56.73	62.18	78.51	72.28	69.48	63.64	64.56	76.54	80.28	67.54	37.50	43.68	48.63	73.68	79.57	70.65	69.25	63.07	-6.18	0.399768	0.663474
K	cassette	TMEM259	chr19	-	chr19:1010895-1011365	chr19:1010895-1011094;chr19:1011195-1011365		chr19:1011095-1011194			100.00	100.00	98.32	93.94	98.46	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	98.78	100.00	100.00	100.00	97.14	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	94.74	98.46	100.00	96.63	100.00	100.00	0.00	0.317774	0.709176
N	jcn_only_AD	TRPM2	chr21	+	chr21:45844823-45845552	chr21:45845333-45845552		chr21:45844823-45845332	chr21:45844822-45844823		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	6.25	0.00	0.00	2.53	0.00	0.00	4.35	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	1.61	0.00	1.73	1.73	0.088743	0.632469
N	alternative_acceptor		chr17	+	chr17:78223087-78223980;chr17:78223087-78224971;chr17:78223087-78223764;chr17:78223087-78223974	chr17:78223087-78225127		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		82.61	94.55	90.00	100.00	87.69	100.00	100.00	100.00	NA	100.00	96.67	100.00	100.00	NA	NA	100.00	100.00	100.00	95.00	89.66	100.00	91.43	75.27	93.18	76.19	83.87	95.65	92.86	86.15	100.00	91.67	91.67	100.00	86.25	88.46	94.05	97.50	89.66	-7.84	0.358963	0.709013
K	alternative_acceptor	LAT,RP11-264B17.3,THOC6	chr16	+	chr16:28997538-28997702	chr16:28997538-28997675		chr16:28997676-28997702	chr16:28997702-28997703		2.13	3.23	4.17	NA	9.09	NA	4.17	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	2.17	1.54	0.00	7.69	NA	NA	0.00	2.78	NA	0.00	NA	1.35	3.03	7.69	8.33	0.00	0.00	3.23	1.35	-1.88	0.269918	0.709013
K	intron_retention	CCAR2	chr8	+	chr8:22470650-22471604				chr8:22470649-22470650;chr8:22471604-22471605		20.00	0.00	18.33	NA	11.76	NA	1.89	0.00	0.00	0.00	1.37	0.00	0.00	0.00	2.44	0.00	0.00	0.00	NA	11.43	NA	0.00	8.82	0.00	0.00	8.11	9.62	0.00	4.17	0.00	13.33	12.50	NA	6.45	5.13	0.00	0.00	9.77	9.77	0.167156	1.000000
N	jcn_only_AA	EHBP1L1	chr11	+	chr11:65359345-65359472;chr11:65359345-65359430	chr11:65359345-65359446		chr11:65359431-65359446;chr11:65359447-65359472	chr11:65359446-65359447;chr11:65359472-65359473		99.02	98.20	98.20	98.03	98.37	98.50	97.39	100.00	98.56	100.00	98.48	93.75	100.00	99.59	98.37	98.18	98.99	100.00	98.98	98.87	98.40	96.15	97.46	100.00	99.26	97.50	98.11	98.21	98.68	97.90	98.79	98.25	99.10	98.82	98.10	98.28	99.04	98.94	-0.09	0.788865	0.908316
K	alternative_acceptor	PPP6R3	chr11	+	chr11:68377492-68382099;chr11:68377492-68380503	chr11:68377492-68380533		chr11:68380504-68380533;chr11:68380534-68382099	chr11:68380533-68380534;chr11:68382099-68382100		97.14	91.30	98.39	80.95	88.00	85.71	94.44	92.31	100.00	95.24	100.00	96.67	100.00	100.00	97.56	94.44	94.74	96.55	88.24	94.12	95.83	95.56	97.87	97.67	NA	97.44	98.31	97.22	97.14	94.59	96.77	95.92	84.21	98.55	94.55	100.00	91.30	96.95	5.66	0.166187	0.660713
N	alternative_donor	RNPEPL1	chr2	+	chr2:241508496-241511839;chr2:241509554-241511839	chr2:241508532-241511839		chr2:241508496-241508531;chr2:241508532-241509553	chr2:241508495-241508496;chr2:241508531-241508532		100.00	95.00	93.33	NA	100.00	NA	98.57	100.00	100.00	92.86	97.56	100.00	98.68	96.15	95.24	94.44	95.18	100.00	NA	NA	NA	NA	92.59	NA	85.71	100.00	91.67	NA	100.00	NA	NA	NA	NA	91.67	91.67	92.31	96.78	100.00	3.22	0.235654	0.607183
N	alternative_acceptor	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2796520-2799278	chr18:2796520-2800520		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		3.12	0.00	3.45	NA	0.00	NA	0.00	3.12	4.88	0.00	0.00	0.00	0.00	1.85	5.41	0.00	0.00	0.00	NA	3.95	NA	0.00	0.00	0.00	NA	2.41	0.00	0.00	0.00	0.00	0.00	3.17	0.00	0.00	NA	2.63	0.00	2.77	2.77	0.007868	0.432575
K	intron_retention	SNX5	chr20	-	chr20:17923840-17928129				chr20:17923839-17923840;chr20:17928129-17928130		4.41	4.26	4.30	6.25	3.35	1.82	0.52	3.57	1.89	1.85	4.32	1.89	2.21	0.00	2.78	1.59	0.73	2.50	2.40	4.08	5.10	0.00	3.36	4.35	1.20	6.67	5.49	2.38	2.84	0.00	8.33	5.62	3.07	3.53	4.43	4.48	2.30	4.25	1.94	0.694652	1.000000
N	alternative_acceptor	NISCH	chr3	+	chr3:52512299-52512464;chr3:52512299-52512388	chr3:52512299-52512390		chr3:52512389-52512390;chr3:52512391-52512464	chr3:52512390-52512391;chr3:52512464-52512465		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	3.12	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	5.26	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention		chr20	+	chr20:44574523-44574667				chr20:44574522-44574523;chr20:44574667-44574668		6.67	6.90	2.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	NA	NA	6.67	0.00	0.00	5.56	0.00	0.00	3.45	2.17	NA	0.00	0.00	7.89	6.82	0.00	4.35	6.67	0.00	0.00	5.06	5.06	0.759058	1.000000
K	cassette	GAK	chr4	-	chr4:891947-925830;chr4:898568-925830	chr4:891947-907394,chr4:898568-907394;chr4:907457-925830		chr4:907395-907456			80.95	100.00	88.24	NA	NA	NA	87.50	88.89	88.89	92.86	100.00	NA	93.75	88.46	84.00	90.00	100.00	NA	NA	92.86	NA	80.00	94.74	80.00	100.00	86.36	100.00	NA	91.67	NA	63.64	90.00	100.00	93.33	92.31	85.71	100.00	87.41	-12.59	0.033879	0.461895
N	alternative_donor	ITGAM	chr16	+	chr16:31338257-31339467	chr16:31338321-31339467		chr16:31338257-31338320	chr16:31338256-31338257		2.22	0.00	2.04	0.00	0.00	NA	0.33	0.00	0.00	0.49	0.32	0.00	0.00	0.00	NA	0.00	0.88	0.00	0.00	0.00	0.00	2.38	1.65	0.00	5.56	0.00	1.75	1.30	0.78	0.00	0.00	1.30	6.45	1.19	2.42	0.00	0.17	0.00	-0.17	0.245864	0.615567
N	cassette	ACD	chr16	-	chr16:67691932-67692622;chr16:67692266-67692622	chr16:67691932-67692457,chr16:67692266-67692457;chr16:67692545-67692622		chr16:67692458-67692544			100.00	100.00	100.00	NA	94.12	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	100.00	NA	94.74	100.00	100.00	NA	93.33	NA	NA	100.00	100.00	NA	100.00	NA	100.00	90.00	100.00	NA	91.67	92.86	100.00	100.00	0.00	0.373901	0.709176
K	alternative_donor	C4orf48	chr4	+	chr4:2043796-2044053	chr4:2043903-2044053		chr4:2043796-2043902	chr4:2043795-2043796		0.00	1.41	0.00	3.33	3.92	2.00	0.00	8.00	4.17	6.67	3.03	8.33	5.88	8.70	0.00	15.00	11.11	NA	3.91	0.00	4.67	NA	4.35	NA	1.98	0.00	6.67	0.00	7.50	6.25	4.35	3.57	3.33	0.00	7.69	3.23	2.66	2.17	-0.48	0.698953	0.871943
N	jcn_only_AA	RBM26	chr13	-	chr13:79889129-79896483;chr13:79894846-79896483;chr13:79889126-79896483	chr13:79895437-79896483		chr13:79889126-79889128;chr13:79889129-79894845;chr13:79894846-79895436	chr13:79889125-79889126;chr13:79889128-79889129;chr13:79894845-79894846		15.38	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	9.68	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.25	8.70	10.53	0.00	0.00	0.00	0.00	0.558964	0.790712
K	intron_retention	DDX41	chr5	-	chr5:176942071-176942186				chr5:176942070-176942071;chr5:176942186-176942187		1.75	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	3.03	6.67	0.00	0.00	0.00	0.00	0.00	0.00	4.35	4.62	10.00	0.00	0.00	0.00	0.00	0.88	0.88	0.973625	1.000000
N	cassette	SEC11A	chr15	-	chr15:85214014-85259255;chr15:85224064-85234765	chr15:85214014-85230855,chr15:85224064-85230855;chr15:85231006-85259255,chr15:85231006-85234765		chr15:85230856-85231005			95.18	100.00	98.00	95.12	99.05	86.36	98.96	99.10	97.39	100.00	99.17	99.03	98.49	100.00	96.23	97.19	99.48	97.56	100.00	96.97	96.88	98.95	98.73	96.55	100.00	95.31	97.75	97.80	98.81	98.84	92.45	97.92	100.00	97.12	100.00	94.52	100.00	96.14	-3.86	0.041980	0.509308
K	cassette	CLN3,RP11-435I10.4	chr16	-	chr16:28499063-28502802	chr16:28499063-28500610;chr16:28500708-28502802		chr16:28500611-28500707			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	92.31	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	NA	94.12	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AA	PCNA	chr20	-	chr20:5096003-5096094	chr20:5096009-5096094		chr20:5096003-5096008	chr20:5096002-5096003		97.67	99.17	100.00	95.00	99.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	98.41	98.37	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.18	100.00	93.68	97.50	94.86	97.06	100.00	100.00	99.59	99.20	-0.38	0.921369	0.973819
K	alternative_donor	TRAPPC5	chr19	+	chr19:7745936-7747127;chr19:7745765-7747127	chr19:7745913-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		7.69	8.77	3.45	7.69	7.14	0.00	8.11	11.54	5.88	0.00	3.23	5.26	4.65	5.00	4.55	0.00	3.85	0.00	3.80	3.45	10.42	0.00	3.08	0.00	6.82	5.88	12.00	10.00	4.76	10.00	0.00	0.00	3.51	0.00	10.00	11.11	5.74	5.44	-0.30	0.853964	0.960074
K	intron_retention	RGS2	chr1	+	chr1:192779562-192780110				chr1:192779561-192779562;chr1:192780110-192780111		2.99	0.00	1.95	0.00	0.00	0.00	0.00	0.00	0.00	0.63	0.00	0.61	0.00	NA	0.00	0.00	0.00	0.00	NA	11.76	0.00	0.00	0.00	2.92	NA	NA	1.78	0.00	0.00	0.00	12.12	4.94	0.00	1.79	0.00	2.25	0.00	7.38	7.38	0.249210	1.000000
N	cassette	STAB1	chr3	+	chr3:52545762-52546611	chr3:52545762-52546356;chr3:52546453-52546611		chr3:52546357-52546452			79.63	85.05	82.69	NA	73.68	81.82	93.01	92.45	86.89	85.86	88.70	89.10	88.85	84.44	77.78	89.61	86.29	87.15	78.33	73.17	NA	82.86	80.00	78.80	88.15	92.31	92.00	89.47	87.62	90.11	NA	88.89	80.00	86.36	84.29	82.07	86.60	84.44	-2.16	0.797315	0.936947
N	alternative_acceptor	NADSYN1,TMEM126B	chr11	+	chr11:85345324-85346710	chr11:85345324-85345521		chr11:85345522-85346710	chr11:85346710-85346711		7.69	3.23	6.98	0.00	3.70	NA	0.00	0.00	2.50	3.85	2.56	2.86	0.00	5.00	4.00	4.76	2.08	3.70	8.33	4.17	3.70	5.00	4.44	9.38	NA	5.26	11.11	6.67	4.17	2.94	5.26	5.88	4.00	6.67	8.33	10.00	3.23	5.13	1.90	0.458382	0.761890
K	intron_retention	ARRDC2	chr19	+	chr19:18120849-18121004				chr19:18120848-18120849;chr19:18121004-18121005		0.00	2.44	3.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.76	0.00	0.00	0.00	5.19	NA	0.00	0.00	6.45	NA	1.82	NA	7.41	3.08	2.70	4.76	0.00	0.00	1.22	0.00	-1.22	0.785415	1.000000
K	cassette	RPLP0	chr12	-	chr12:120635266-120636656	chr12:120635266-120636356;chr12:120636435-120636656		chr12:120636357-120636434			94.83	94.09	97.81	91.88	93.30	92.46	95.47	97.56	96.44	96.13	96.53	96.27	97.40	95.00	98.30	96.54	98.95	98.37	94.44	94.12	89.35	95.81	94.71	94.64	94.86	100.00	96.58	95.71	94.68	93.20	89.09	96.00	94.44	93.46	91.81	92.57	94.65	94.91	0.26	0.991905	0.997468
K	jcn_only_AA	FAM89B	chr11	+	chr11:65340432-65340833;chr11:65340432-65340823	chr11:65340432-65340872		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		5.71	0.00	12.00	NA	9.09	NA	12.77	10.71	15.38	13.79	13.51	0.00	12.82	20.69	11.11	8.00	11.63	8.33	10.53	14.29	7.69	NA	10.71	NA	0.00	8.00	7.27	15.38	23.53	9.09	0.00	14.29	12.00	14.29	5.41	6.67	11.27	9.36	-1.91	0.638721	0.838192
K	alternative_first_exon	GNAI2	chr3	+	chr3:50273867-50289531;chr3:50268431-50289531;chr3:50264626-50289531;chr3:50289176-50289531;chr3:50284508-50289531;chr3:50273886-50289531	chr3:50275849-50289531	chr3:50268208-50268430;chr3:50263724-50264625;chr3:50289052-50289175;chr3:50284326-50284507;chr3:50273384-50273885	chr3:50275544-50275848			2.82	1.32	3.89	0.00	0.00	NA	0.19	0.00	0.00	0.00	0.22	0.00	0.16	0.22	0.36	0.00	0.20	0.00	3.23	1.25	1.11	1.16	1.39	0.91	2.13	0.38	2.21	0.00	0.45	0.00	1.96	2.82	8.45	3.31	2.53	2.45	1.73	0.81	-0.91	0.313900	0.523821
K	jcn_only_AD	COX7C	chr5	+	chr5:85914148-85915169;chr5:85913948-85915169	chr5:85913871-85915169		chr5:85913871-85913947;chr5:85913948-85914147	chr5:85913870-85913871;chr5:85913947-85913948		8.81	11.64	7.90	8.80	9.84	9.16	9.82	7.50	8.93	12.97	9.38	9.24	10.09	11.71	8.59	12.07	11.98	9.80	8.97	11.67	8.06	11.78	11.33	9.57	10.34	8.36	9.87	10.37	12.17	9.27	12.16	11.38	10.55	9.41	9.18	8.40	10.21	10.24	0.03	0.831692	0.923322
N	jcn_only_AD	TUFM	chr16	-	chr16:28855423-28855595;chr16:28855423-28855550	chr16:28855423-28855634		chr16:28855551-28855595;chr16:28855596-28855634	chr16:28855595-28855596;chr16:28855634-28855635		3.17	7.48	4.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.48	2.01	5.00	0.00	0.00	6.62	0.00	4.44	0.00	0.00	0.00	17.78	14.06	7.55	0.00	0.00	0.00	3.31	1.58	-1.73	0.851200	0.928405
K	alternative_last_exon	EWSR1	chr22	+	chr22:29684776-29687553,chr22:29684776-29687550	chr22:29684776-29686401	chr22:29687554-29687588	chr22:29686402-29686673			34.43	13.04	47.56	13.04	11.36	47.62	4.88	4.08	8.11	3.77	5.17	5.88	5.45	4.44	10.64	4.21	5.06	1.67	25.00	25.00	11.11	31.15	27.71	39.76	NA	26.98	37.50	12.66	13.56	10.42	22.73	40.85	21.05	42.50	47.37	44.44	13.04	23.87	10.83	0.403059	0.567228
K	cassette	FIP1L1,RP11-231C18.3	chr4	+	chr4:54266007-54292038	chr4:54266007-54280781;chr4:54280890-54292038		chr4:54280782-54280889			52.63	27.27	47.50	50.00	47.06	NA	44.00	47.37	55.88	59.57	61.54	72.73	54.17	60.00	62.16	68.25	58.00	66.67	30.77	39.13	38.46	59.46	62.86	66.67	NA	42.86	55.88	62.50	55.17	NA	33.33	37.50	NA	57.14	57.14	48.65	37.38	45.11	7.73	0.391026	0.709410
K	intron_retention	NARS	chr18	-	chr18:55269719-55270043				chr18:55269718-55269719;chr18:55270043-55270044		0.00	0.00	6.19	NA	3.12	NA	0.00	0.00	0.97	0.00	0.00	0.00	2.11	0.00	2.02	0.00	1.92	0.00	NA	0.00	5.88	2.44	3.75	0.00	0.00	0.00	4.82	4.17	1.37	0.00	5.26	6.06	0.00	5.00	3.60	5.26	0.00	0.00	0.00	0.685725	1.000000
K	intron_retention	TMEM120A	chr7	-	chr7:75616747-75616855				chr7:75616746-75616747;chr7:75616855-75616856		1.89	2.17	6.06	0.00	5.13	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.94	0.00	0.00	0.00	0.00	3.23	3.70	18.18	11.11	NA	4.88	3.33	5.88	NA	4.35	8.70	2.78	6.67	3.12	5.00	5.00	0.00	1.08	2.33	1.25	0.747500	1.000000
K	cassette	SMARCD2	chr17	-	chr17:61910531-61910946	chr17:61910531-61910657;chr17:61910781-61910946		chr17:61910658-61910780			100.00	93.06	96.10	100.00	94.74	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	97.92	100.00	100.00	100.00	98.46	100.00	100.00	100.00	100.00	95.45	96.30	100.00	100.00	100.00	100.00	100.00	0.00	0.198573	0.709176
K	intron_retention	MALAT1	chr11	+	chr11:65270592-65271199				chr11:65270591-65270592;chr11:65271199-65271200		96.02	96.88	95.65	98.70	98.59	98.21	100.00	96.30	94.59	100.00	100.00	100.00	100.00	96.92	98.85	100.00	100.00	100.00	100.00	98.59	100.00	100.00	100.00	99.06	95.96	95.28	94.55	100.00	97.94	96.43	98.92	100.00	100.00	96.91	97.10	95.30	100.00	96.61	-3.39	0.383232	1.000000
K	intron_retention		chr9	+	chr9:130550665-130550822				chr9:130550664-130550665;chr9:130550822-130550823		9.43	5.88	10.53	5.00	11.76	6.25	2.78	1.82	8.93	1.03	1.79	0.96	4.00	7.55	5.13	5.26	2.60	0.96	6.67	15.56	4.88	10.34	13.51	6.25	NA	6.98	8.86	7.41	3.23	5.26	23.53	12.50	17.65	3.03	10.87	5.32	5.88	8.49	2.61	0.817893	1.000000
K	jcn_only_AA	MRPL52	chr14	+	chr14:23299150-23299395;chr14:23299150-23299261	chr14:23299150-23299258					51.35	44.05	58.57	52.27	48.33	46.94	64.86	58.33	70.37	55.81	62.22	70.59	63.16	66.67	65.52	76.60	65.48	86.96	56.63	49.09	63.00	52.00	53.85	56.25	55.81	37.50	52.54	70.00	58.33	66.67	59.32	48.98	47.56	62.07	54.29	50.00	56.22	54.84	-1.38	0.765545	0.896441
K	intron_retention	ALDH2	chr12	+	chr12:112229224-112229864				chr12:112229223-112229224;chr12:112229864-112229865		2.27	0.00	3.52	0.00	1.19	NA	0.00	0.00	0.51	0.00	0.00	0.00	0.69	0.00	2.61	0.00	1.22	0.00	0.00	2.78	2.17	0.00	1.27	0.00	0.00	2.56	5.31	0.00	0.88	0.00	0.00	5.80	1.92	0.00	1.64	0.68	0.00	1.14	1.14	0.687560	1.000000
N	alternative_donor	HNMT	chr2	+	chr2:138762796-138771344	chr2:138763363-138771344		chr2:138762796-138763362	chr2:138762795-138762796		2.56	6.45	1.83	NA	13.33	NA	0.00	0.39	0.00	0.00	0.00	0.00	0.27	0.66	0.00	0.00	0.00	0.00	13.33	1.27	3.70	0.00	1.67	0.00	27.27	1.21	0.95	0.00	1.39	0.00	0.00	1.22	6.67	4.00	3.95	0.00	6.56	0.94	-5.62	0.113935	0.524802
N	alternative_acceptor	TCF25	chr16	+	chr16:89960267-89961424;chr16:89960267-89961445	chr16:89960267-89961490		chr16:89961425-89961445;chr16:89961446-89961490	chr16:89961445-89961446;chr16:89961490-89961491		9.68	0.00	11.36	0.00	7.41	NA	14.89	3.12	6.67	9.38	10.20	7.14	13.33	6.90	7.50	7.32	12.50	15.00	25.00	10.00	15.79	11.76	10.26	16.00	NA	3.45	11.63	7.41	7.41	7.69	24.00	12.50	7.69	8.57	5.41	11.11	13.33	8.29	-5.04	0.622529	0.854460
N	alternative_donor	DNAJC17	chr15	-	chr15:41067795-41068387;chr15:41067795-41068393	chr15:41067795-41068265		chr15:41068266-41068387;chr15:41068388-41068393	chr15:41068387-41068388;chr15:41068393-41068394		0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	4.76	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.38	0.00	0.00	10.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.692317	0.870192
N	alternative_acceptor	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668273;chr17:79668162-79668244;chr17:79668162-79668537	chr17:79668162-79668567		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		17.65	21.74	13.85	18.33	17.57	17.54	14.29	17.39	15.38	25.86	23.08	23.81	22.73	17.24	20.59	21.15	23.81	18.18	16.67	9.80	12.50	17.24	21.43	18.87	18.75	16.28	18.97	15.69	11.86	19.12	6.94	13.39	15.62	18.75	16.36	13.33	17.71	16.76	-0.95	0.115346	0.605363
N	alternative_donor	VRK3	chr19	-	chr19:50484271-50491628;chr19:50484271-50485124	chr19:50484271-50485074		chr19:50485075-50485124;chr19:50485125-50491628	chr19:50485124-50485125;chr19:50491628-50491629		4.00	3.45	5.13	14.29	8.33	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	6.67	0.00	7.41	3.70	7.14	0.00	5.88	NA	7.69	3.57	2.38	0.00	7.14	5.56	9.09	0.00	7.69	5.56	5.88	3.85	5.43	3.85	-1.58	0.911338	0.981916
N	alternative_acceptor	SLC25A48,TGFBI	chr5	+	chr5:135385270-135388664;chr5:135385270-135386473;chr5:135385270-135388706;chr5:135385270-135388595	chr5:135385270-135386076		chr5:135386077-135386473;chr5:135386474-135388595;chr5:135388596-135388664;chr5:135388665-135388706	chr5:135386473-135386474;chr5:135388595-135388596;chr5:135388664-135388665;chr5:135388706-135388707		0.25	1.26	0.87	3.85	3.12	5.26	0.05	0.12	0.17	0.06	0.25	0.00	0.09	0.00	0.38	0.10	0.31	0.00	2.76	0.28	0.72	0.34	1.32	0.00	0.65	0.28	0.31	0.29	1.06	0.00	0.56	0.48	2.59	1.22	1.40	0.20	0.96	0.27	-0.69	0.101413	0.598353
N	jcn_only_AD	IFNAR2	chr21	+	chr21:34617380-34619022	chr21:34618788-34619022		chr21:34617380-34618787	chr21:34617379-34617380		4.08	0.00	8.14	NA	0.00	0.00	3.08	8.93	7.69	5.07	2.56	4.12	0.00	3.94	4.96	0.00	0.00	4.43	0.00	0.00	0.00	0.00	0.00	4.92	NA	13.04	4.11	6.45	6.25	0.00	0.00	1.61	0.00	1.67	1.45	5.50	0.00	4.01	4.01	0.093159	0.639657
K	cassette	ARID5A	chr2	+	chr2:97213255-97215489	chr2:97213255-97215057;chr2:97215197-97215489		chr2:97215058-97215196			61.11	66.67	48.72	52.63	60.00	76.92	63.16	66.37	56.95	65.84	54.84	74.55	47.62	64.44	59.46	62.70	45.95	68.95	NA	62.12	58.33	74.51	58.54	70.43	41.67	65.75	57.89	66.25	56.00	64.71	54.37	53.52	NA	56.52	53.85	60.22	55.39	63.28	7.89	0.301941	0.709176
K	intron_retention	CPNE1	chr20	-	chr20:34218718-34218822				chr20:34218717-34218718;chr20:34218822-34218823		2.94	5.22	4.76	0.00	4.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	1.92	3.45	8.51	5.00	0.00	0.00	0.00	4.88	1.72	9.09	6.15	4.44	2.33	3.57	5.26	3.70	1.69	0.00	1.96	4.82	1.92	5.77	8.47	3.45	1.92	3.20	1.28	0.888551	1.000000
N	cassette	HCLS1	chr3	-	chr3:121350830-121351178	chr3:121350830-121350947;chr3:121351032-121351178		chr3:121350948-121351031			99.07	100.00	100.00	100.00	98.54	100.00	99.57	99.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.02	100.00	98.59	98.34	99.15	100.00	98.74	100.00	93.88	100.00	99.57	100.00	100.00	99.24	97.62	98.47	97.42	100.00	98.40	100.00	99.08	99.20	0.12	0.457240	0.756299
N	cassette	TPM3	chr1	-	chr1:154143188-154145383;chr1:154143965-154145383	chr1:154143965-154144504,chr1:154143188-154144504;chr1:154144581-154145383		chr1:154144505-154144580			98.86	93.75	96.97	100.00	95.51	100.00	95.62	98.45	97.71	96.91	97.55	95.83	96.38	98.93	97.82	96.05	97.10	96.85	100.00	98.85	97.37	96.51	96.01	96.23	NA	93.55	98.41	94.87	95.30	96.61	98.16	98.28	100.00	96.47	94.97	96.33	96.38	98.65	2.27	0.678737	0.883836
N	alternative_donor	MYO1F	chr19	-	chr19:8616759-8616916	chr19:8616759-8616851		chr19:8616852-8616916	chr19:8616916-8616917		2.78	2.30	4.01	NA	0.00	NA	0.00	2.31	1.35	0.00	0.60	0.00	0.53	2.80	1.56	0.00	0.00	0.00	7.14	2.50	3.85	0.00	2.11	0.00	13.33	2.06	3.61	0.00	3.28	NA	4.76	2.80	5.00	2.27	1.09	1.49	3.65	2.64	-1.01	0.413325	0.675488
N	jcn_only_AD	MRPS16	chr10	-	chr10:75011782-75012289;chr10:75011782-75011877;chr10:75011782-75011981;chr10:75011782-75012016;chr10:75011782-75012475	chr10:75011782-75012227		chr10:75011878-75011981;chr10:75011982-75012016;chr10:75012017-75012227;chr10:75012228-75012289;chr10:75012290-75012475	chr10:75011981-75011982;chr10:75012016-75012017;chr10:75012227-75012228;chr10:75012289-75012290;chr10:75012475-75012476		100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	96.67	94.55	95.65	100.00	97.75	100.00	95.74	98.41	93.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	97.78	100.00	100.00	100.00	95.65	100.00	94.12	100.00	98.88	100.00	1.12	0.089798	0.632469
K	intron_retention	DNAJC4	chr11	+	chr11:64000087-64000175				chr11:64000086-64000087;chr11:64000175-64000176		5.66	5.61	5.80	2.44	1.01	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	3.03	7.14	4.29	4.35	3.70	0.00	2.74	0.00	4.35	0.00	1.92	0.00	6.45	12.70	2.56	2.63	3.03	4.26	2.65	2.83	0.18	0.954171	1.000000
K	intron_retention		chr8	-	chr8:144657071-144657155				chr8:144657070-144657071;chr8:144657155-144657156		20.00	32.48	30.43	28.00	30.77	30.11	4.17	7.69	8.33	NA	0.00	0.00	2.56	NA	NA	6.67	7.14	10.00	25.29	20.00	26.79	NA	42.31	NA	31.21	10.00	29.63	NA	28.57	21.43	27.27	26.19	30.29	25.00	26.32	30.43	27.79	20.00	-7.79	0.925703	1.000000
N	cassette	TRAPPC12	chr2	+	chr2:3464108-3481465	chr2:3464108-3469367;chr2:3469467-3481465		chr2:3469368-3469466			100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	94.44	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	TM9SF4	chr20	+	chr20:30746318-30746972;chr20:30746318-30747794	chr20:30746318-30747058		chr20:30746973-30747058;chr20:30747059-30747794	chr20:30747058-30747059;chr20:30747794-30747795		0.00	36.36	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	cassette	ADGRE5	chr19	+	chr19:14512573-14515194	chr19:14512573-14513408;chr19:14513675-14515194		chr19:14513409-14513674			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	94.12	96.67	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	CSNK1G2	chr19	+	chr19:1979618-1979750	chr19:1979643-1979750		chr19:1979618-1979642	chr19:1979617-1979618		88.10	100.00	88.37	NA	91.67	NA	100.00	97.30	95.12	91.43	93.10	95.24	95.74	94.29	90.24	88.89	92.06	100.00	100.00	88.46	100.00	NA	89.66	NA	100.00	89.66	97.44	100.00	95.45	NA	90.00	90.24	88.24	92.86	90.00	82.14	100.00	89.83	-10.17	0.035570	0.350321
K	intron_retention	LDHA	chr11	+	chr11:18425336-18428785				chr11:18425335-18425336;chr11:18428785-18428786		87.18	88.79	87.86	92.00	92.13	97.40	88.85	88.94	89.47	85.61	81.63	82.49	86.58	88.79	90.29	87.53	83.02	84.27	80.00	84.90	82.34	90.68	93.62	91.46	100.00	89.29	88.66	92.73	92.90	91.63	88.89	88.07	89.58	94.41	92.72	95.07	88.82	88.84	0.02	0.873078	1.000000
N	jcn_only_AA		chr17	+	chr17:75208284-75209512	chr17:75208284-75209395		chr17:75209396-75209512	chr17:75209512-75209513		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_last_exon	COQ2	chr4	-	chr4:84183809-84188738;chr4:84185517-84188738	chr4:84188362-84188738	chr4:84183742-84183808;chr4:84184977-84185516	chr4:84187850-84188361			0.00	7.41	10.00	NA	5.00	0.00	3.45	8.33	15.38	0.00	2.70	0.00	2.70	9.09	0.00	8.33	3.12	0.00	4.17	0.00	7.69	NA	0.00	NA	4.35	NA	7.69	NA	5.00	0.00	NA	NA	5.00	10.00	0.00	NA	4.26	4.17	-0.09	0.954914	0.972989
K	intron_retention	SLC39A13	chr11	+	chr11:47435059-47435147				chr11:47435058-47435059;chr11:47435147-47435148		3.80	0.00	4.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	5.48	4.35	0.00	1.82	2.56	8.11	3.03	0.00	2.50	3.03	0.00	2.67	4.71	2.50	0.00	2.16	2.16	0.222862	1.000000
N	alternative_donor	HNRNPH3	chr10	+	chr10:70098427-70098896;chr10:70098445-70098896	chr10:70098400-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		35.48	41.67	26.32	41.67	40.00	NA	41.82	34.15	42.03	60.53	45.56	53.25	43.28	48.89	39.29	62.77	52.04	61.02	NA	26.09	31.58	35.42	32.65	39.58	NA	24.32	27.27	46.94	32.81	42.59	12.50	21.67	33.33	35.29	36.59	25.00	41.75	30.12	-11.63	0.120445	0.533450
K	intron_retention		chr6	+	chr6:31918181-31918395				chr6:31918180-31918181;chr6:31918395-31918396		5.63	0.00	1.09	8.70	0.00	8.20	NA	0.98	0.72	NA	NA	5.93	NA	1.04	0.83	NA	NA	4.21	0.00	4.21	0.99	21.43	0.00	20.17	0.00	3.20	0.88	20.83	NA	14.84	4.03	1.43	7.69	7.41	0.00	16.28	0.00	3.62	3.62	0.899370	1.000000
K	jcn_only_AA	BABAM1,CTD-2278I10.6,NDUFA3	chr19	+	chr19:17378337-17379602;chr19:17378337-17379610	chr19:17378337-17379564		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		18.18	11.43	10.87	NA	21.05	NA	17.65	25.00	26.53	12.82	21.13	21.43	22.22	19.35	23.91	18.18	16.46	15.79	15.38	15.79	26.92	NA	26.47	16.67	18.18	35.00	16.28	22.22	22.22	33.33	5.26	14.29	9.52	13.04	11.54	8.00	16.52	18.77	2.25	0.395598	0.667722
N	alternative_acceptor		chr19	+	chr19:46025840-46025978;chr19:46025840-46025949	chr19:46025840-46025975		chr19:46025950-46025975;chr19:46025976-46025978	chr19:46025975-46025976;chr19:46025978-46025979		93.75	91.11	93.84	96.77	95.08	NA	88.51	97.50	91.89	91.76	91.61	90.75	96.05	94.79	96.97	88.97	91.81	94.62	100.00	91.74	94.74	92.11	96.23	93.48	100.00	95.00	94.85	96.00	91.30	96.88	93.62	93.75	94.74	95.35	98.02	95.24	95.39	94.27	-1.12	0.754962	0.910387
K	alternative_first_exon	ARHGEF2	chr1	-	chr1:155939092-155939759,chr1:155939092-155939943,chr1:155939092-155948011,chr1:155939092-155948703;chr1:155939092-155952897;chr1:155939092-155947857	chr1:155939092-155948155	chr1:155952898-155952991;chr1:155947858-155947951	chr1:155948156-155948318			75.00	100.00	63.16	NA	NA	NA	73.08	73.81	64.60	60.00	80.77	50.60	86.59	63.85	68.15	71.88	84.04	63.27	NA	62.79	NA	50.00	80.00	46.67	100.00	53.09	63.27	75.00	78.57	41.67	73.08	66.67	NA	67.57	63.41	49.40	93.30	68.47	-24.83	0.027417	0.118071
N	alternative_donor	SRRM2	chr16	+	chr16:2820229-2820352;chr16:2819286-2820352	chr16:2820211-2820352		chr16:2819286-2820210;chr16:2820211-2820228	chr16:2819285-2819286;chr16:2820210-2820211		1.29	0.87	3.93	8.54	2.79	6.45	3.03	4.08	0.00	1.37	1.16	3.23	6.59	1.79	6.19	4.05	3.92	3.85	0.91	7.02	1.54	10.10	5.61	14.94	5.71	2.53	3.11	10.00	7.63	4.60	2.42	2.80	1.37	11.81	2.88	3.51	2.20	2.47	0.27	0.937181	0.984606
K	jcn_only_AA	CHCHD7	chr8	+	chr8:57127227-57128991	chr8:57127227-57128947		chr8:57128948-57128991	chr8:57128991-57128992		22.58	21.05	27.40	18.75	15.15	14.81	28.89	30.51	26.87	24.36	34.15	21.05	24.07	30.77	27.91	24.18	27.08	25.00	34.78	41.67	28.95	26.83	25.58	25.58	14.81	20.59	27.45	22.45	32.14	25.35	33.33	30.19	12.82	18.52	32.26	34.33	22.56	30.64	8.08	0.151893	0.663989
K	alternative_last_exon	AK6,TAF9	chr5	-	chr5:68648081-68662329;chr5:68661582-68662329	chr5:68651781-68662329	chr5:68646811-68648080;chr5:68660570-68661581	chr5:68651722-68651780			29.55	17.53	32.26	11.11	16.22	6.71	30.28	36.17	27.27	30.43	26.98	19.75	28.83	30.61	37.84	26.95	22.99	21.74	15.28	27.08	24.39	23.53	26.63	22.69	5.71	30.56	37.93	20.47	26.01	26.03	20.75	22.06	10.26	19.15	23.90	23.11	16.41	30.05	13.65	0.041385	0.227559
K	alternative_donor	ARHGEF2,RFX5	chr1	-	chr1:155917807-155920089	chr1:155917807-155920059		chr1:155920060-155920089	chr1:155920089-155920090		18.58	8.16	18.34	14.29	22.22	NA	19.80	20.00	19.67	27.27	22.11	29.33	16.48	18.92	20.13	23.30	31.40	30.58	23.08	13.45	17.54	17.17	23.46	22.88	0.00	18.24	16.23	17.39	25.64	18.52	17.81	14.77	15.38	15.12	16.52	20.65	15.93	18.41	2.48	0.304050	0.650093
N	cassette	EIF3I	chr1	+	chr1:32690077-32692003;chr1:32690077-32694099	chr1:32690077-32691749;chr1:32691922-32694099,chr1:32691922-32692003		chr1:32691750-32691921			93.18	100.00	96.67	82.76	92.68	100.00	98.81	97.06	96.83	100.00	97.06	100.00	100.00	96.88	92.42	95.61	97.58	97.73	90.00	89.74	93.48	94.44	95.08	96.97	NA	91.67	100.00	97.83	98.04	98.25	87.10	87.27	91.30	93.65	95.31	95.24	98.81	92.43	-6.38	0.248827	0.709176
N	alternative_acceptor	ACOT9	chrX	-	chrX:23724857-23725993	chrX:23724975-23725993		chrX:23724857-23724974	chrX:23724856-23724857		13.38	12.07	8.11	11.11	6.12	13.04	0.00	3.08	2.34	2.99	2.00	2.25	1.67	4.21	5.95	1.67	3.57	3.17	0.00	9.29	5.56	3.85	10.53	13.13	NA	10.26	11.61	11.43	7.81	10.40	13.85	12.42	5.00	12.60	8.86	11.65	1.67	9.77	8.10	0.109142	0.600043
N	alternative_acceptor	GRAMD4	chr22	+	chr22:40755040-40755267	chr22:40755040-40755263		chr22:40755264-40755267	chr22:40755267-40755268		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.67	100.00	91.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention	IVNS1ABP	chr1	-	chr1:185269476-185269568				chr1:185269475-185269476;chr1:185269568-185269569		4.58	0.00	2.50	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	2.04	3.98	2.00	3.47	0.00	2.38	1.50	2.44	2.13	1.82	0.00	8.93	0.00	1.55	0.91	1.15	0.00	1.19	1.19	0.240839	1.000000
N	cassette	UBL7	chr15	-	chr15:74740942-74741966;chr15:74738569-74741966	chr15:74740942-74741526,chr15:74738569-74741526;chr15:74741695-74741966		chr15:74741527-74741694			95.45	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.29	100.00	91.76	100.00	100.00	100.00	100.00	100.00	0.00	0.958903	0.988542
K	cassette	U2SURP	chr3	+	chr3:142772637-142775153	chr3:142772637-142773784;chr3:142773962-142775153		chr3:142773785-142773961			100.00	100.00	90.00	80.00	92.59	100.00	88.24	88.89	93.55	86.67	81.08	84.62	96.30	90.91	95.00	89.66	92.11	94.44	100.00	90.48	93.94	92.00	93.75	88.89	100.00	100.00	100.00	90.48	91.43	87.50	91.30	100.00	100.00	86.21	87.88	84.62	100.00	91.10	-8.90	0.204682	0.709176
K	jcn_only_AA	GMPR2	chr14	+	chr14:24707612-24707832;chr14:24707612-24707802	chr14:24707612-24707794		chr14:24707795-24707802;chr14:24707803-24707832	chr14:24707802-24707803;chr14:24707832-24707833		97.14	100.00	96.97	NA	94.74	NA	93.15	97.67	91.43	100.00	98.11	88.24	95.24	94.55	100.00	87.50	92.86	93.33	96.00	100.00	93.18	100.00	92.31	92.86	100.00	91.11	96.30	100.00	96.36	100.00	95.65	94.87	85.71	93.33	94.29	100.00	95.62	96.40	0.78	0.698354	0.866814
K	alternative_donor	PLOD3	chr7	-	chr7:100853955-100854871	chr7:100853955-100854821		chr7:100854822-100854871	chr7:100854871-100854872		3.45	0.00	0.00	0.00	0.00	NA	1.09	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.11	0.00	6.25	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	4.35	4.55	3.57	0.00	1.01	0.00	-1.01	0.241439	0.610791
N	alternative_acceptor	PSMD6	chr3	-	chr3:64004743-64004971;chr3:64004623-64004971	chr3:64004714-64004971		chr3:64004623-64004713;chr3:64004714-64004742	chr3:64004622-64004623;chr3:64004713-64004714		97.83	100.00	100.00	100.00	94.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	98.46	95.31	100.00	100.00	100.00	0.00	0.184819	0.660713
K	cassette	APOPT1,RP11-73M18.2	chr14	+	chr14:104038158-104053610	chr14:104038158-104040443;chr14:104040508-104053610		chr14:104040444-104040507			89.47	100.00	100.00	92.31	96.43	100.00	87.10	87.50	100.00	87.88	91.11	90.00	89.29	100.00	100.00	93.33	89.58	100.00	94.12	100.00	100.00	90.00	100.00	92.31	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	90.91	93.36	100.00	6.64	0.496990	0.781227
K	intron_retention	FPGS	chr9	+	chr9:130569968-130570512				chr9:130569967-130569968;chr9:130570512-130570513		13.46	0.00	11.49	11.54	13.64	10.14	0.00	2.78	3.70	5.63	0.00	3.51	2.08	3.39	3.57	4.49	0.00	5.26	0.00	11.90	9.26	11.36	14.81	14.16	NA	10.87	16.92	6.67	14.29	6.25	3.70	13.64	10.00	18.18	3.70	11.58	0.00	7.29	7.29	0.088226	1.000000
N	alternative_donor	PPP6R2	chr22	+	chr22:50878479-50879250	chr22:50878892-50879250		chr22:50878479-50878891	chr22:50878478-50878479		6.00	2.82	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.23	0.00	3.57	0.00	0.00	NA	0.00	2.50	1.82	4.00	3.23	4.55	0.00	2.70	2.00	4.00	3.23	3.45	0.00	3.70	1.39	3.33	3.70	6.06	0.69	1.25	0.56	0.600248	0.810253
K	jcn_only_AA	NDUFV1	chr11	+	chr11:67378679-67378992;chr11:67378679-67378873	chr11:67378679-67378947		chr11:67378874-67378947;chr11:67378948-67378992	chr11:67378947-67378948;chr11:67378992-67378993		0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.32	0.00	0.00	0.00	4.89	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.691921	0.864632
K	intron_retention	PRR14	chr16	+	chr16:30666536-30666671				chr16:30666535-30666536;chr16:30666671-30666672		13.95	31.03	18.87	18.75	15.62	14.29	0.00	3.57	0.00	0.00	0.00	NA	0.00	0.00	8.11	5.00	0.00	0.00	5.26	9.09	16.67	22.22	19.44	7.14	31.25	13.64	17.78	5.26	5.56	10.53	27.59	27.91	29.41	18.75	17.86	21.88	17.34	11.37	-5.97	0.947399	1.000000
N	cassette	SNHG5	chr6	-	chr6:86387211-86387853;chr6:86387211-86387671	chr6:86387211-86387508;chr6:86387594-86387671,chr6:86387594-86387853		chr6:86387509-86387593			87.80	90.00	95.70	94.93	93.13	93.32	88.89	76.47	94.44	96.10	95.51	93.44	58.82	NA	89.47	82.61	68.75	NA	92.31	91.67	90.83	92.59	96.86	96.40	90.21	100.00	94.74	95.08	90.10	91.35	89.66	94.81	90.34	96.18	95.68	94.92	90.10	89.66	-0.44	0.551385	0.820124
N	alternative_acceptor	SERPINB1	chr6	-	chr6:2829641-2836089;chr6:2834247-2836089	chr6:2818205-2836089		chr6:2818205-2829640;chr6:2829641-2834246	chr6:2818204-2818205;chr6:2829640-2829641		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.88	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.885374	0.961240
K	alternative_acceptor	PLEKHO1	chr1	+	chr1:150123249-150128259	chr1:150123249-150124952		chr1:150124953-150128259	chr1:150128259-150128260		4.98	2.22	8.81	1.23	0.70	1.30	0.93	1.12	1.08	1.04	0.78	0.69	1.59	1.18	2.41	1.36	1.02	1.07	1.61	5.39	1.59	3.47	2.55	5.94	3.15	5.94	5.01	3.55	2.48	2.31	3.56	4.94	1.47	5.04	5.10	6.45	1.60	4.27	2.67	0.087084	0.586065
K	intron_retention	MKRN1	chr7	-	chr7:140155034-140155589				chr7:140155033-140155034;chr7:140155589-140155590		5.66	0.00	10.11	0.00	0.00	0.00	1.43	1.09	0.00	0.00	0.00	0.00	1.52	0.00	1.12	0.00	0.00	0.00	0.00	4.08	4.35	5.88	4.44	9.68	0.00	2.50	4.88	0.00	3.23	6.06	7.89	8.22	0.00	7.89	7.14	10.00	0.00	3.29	3.29	0.576883	1.000000
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12763244-12766507;chr19:12763212-12766507	chr19:12763275-12766507		chr19:12763212-12763243;chr19:12763244-12763274	chr19:12763211-12763212;chr19:12763243-12763244		98.55	97.64	95.41	97.96	98.08	97.14	97.79	97.50	98.43	98.52	98.15	97.81	98.02	100.00	96.59	97.85	97.62	98.95	95.74	96.30	93.75	92.98	97.14	96.74	97.53	98.61	98.00	97.47	95.59	98.02	98.18	92.71	93.85	96.51	94.51	98.06	97.59	98.37	0.78	0.122151	0.608355
K	alternative_acceptor	ARRDC1	chr9	+	chr9:140507459-140507874;chr9:140507459-140507911	chr9:140507459-140507864		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		13.04	27.27	50.00	NA	18.18	NA	3.12	0.00	4.35	NA	0.00	NA	6.45	3.33	4.17	NA	0.00	NA	NA	16.67	NA	NA	21.74	NA	30.77	5.26	11.76	NA	15.79	NA	NA	38.46	27.27	41.67	23.08	27.27	27.27	5.26	-22.01	0.137837	0.635210
K	cassette	LUC7L	chr16	-	chr16:243015-256002	chr16:243015-249060;chr16:249238-256002		chr16:249061-249237			94.12	100.00	94.64	96.30	98.41	92.86	100.00	100.00	95.00	96.88	95.45	100.00	100.00	100.00	93.33	97.37	100.00	95.83	97.78	100.00	96.00	97.73	98.00	100.00	100.00	100.00	94.23	100.00	100.00	96.15	93.10	100.00	92.16	96.43	98.08	94.83	100.00	100.00	0.00	0.813000	0.937478
K	cassette	YKT6	chr7	+	chr7:44250724-44251845	chr7:44250724-44251152;chr7:44251204-44251845		chr7:44251153-44251203			6.58	6.38	3.92	1.92	5.48	5.83	1.00	7.32	7.79	7.25	4.55	6.94	4.59	3.61	5.13	4.55	3.11	5.45	4.65	4.08	6.58	5.33	2.56	5.68	6.25	8.33	2.50	3.61	3.12	6.45	6.38	3.70	4.84	4.39	5.07	3.12	4.75	6.48	1.74	0.220241	0.709176
K	alternative_acceptor	MRPL27	chr17	-	chr17:48445660-48447392	chr17:48445675-48447392		chr17:48445660-48445674	chr17:48445659-48445660		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	5.88	2.04	5.00	10.17	2.78	12.90	6.67	3.92	5.88	4.55	4.17	1.56	0.00	0.00	2.27	0.78	0.00	-0.78	0.583505	0.841804
K	jcn_only_AA	AKAP8L	chr19	-	chr19:15512105-15514285	chr19:15512415-15514285		chr19:15512105-15512414	chr19:15512104-15512105		96.30	100.00	100.00	NA	100.00	NA	100.00	96.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	90.32	95.74	100.00	100.00	100.00	100.00	100.00	96.15	-3.85	0.048330	0.663989
K	jcn_only_AA	SELM	chr22	-	chr22:31502033-31503362;chr22:31502150-31503362;chr22:31502102-31503362	chr22:31501952-31503362		chr22:31501952-31502032;chr22:31502033-31502101;chr22:31502102-31502149	chr22:31501951-31501952;chr22:31502032-31502033;chr22:31502101-31502102		96.95	100.00	95.92	100.00	95.45	100.00	NA	92.86	95.28	NA	NA	NA	NA	93.33	96.23	NA	NA	NA	100.00	96.10	96.80	100.00	96.30	100.00	100.00	98.00	96.67	NA	100.00	NA	95.06	95.78	97.50	NA	95.45	85.71	100.00	95.58	-4.42	0.004872	0.450187
K	intron_retention		chr12	-	chr12:57867960-57868205				chr12:57867959-57867960;chr12:57868205-57868206		3.39	4.42	5.26	0.00	4.41	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	1.75	NA	0.00	0.00	2.99	0.00	0.00	NA	0.00	1.85	2.50	0.00	1.92	0.00	0.00	0.00	0.00	0.824850	1.000000
K	intron_retention	MGAT4B,MIR1229	chr5	-	chr5:179225278-179225346				chr5:179225277-179225278;chr5:179225346-179225347		4.00	4.13	3.57	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	5.26	1.35	2.56	1.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	9.80	6.25	0.00	0.00	0.00	1.01	2.00	0.99	0.879778	1.000000
K	jcn_only_AD	SARAF	chr8	-	chr8:29921430-29923543	chr8:29921430-29923503		chr8:29923504-29923543	chr8:29923543-29923544		83.70	83.91	86.16	88.24	93.33	89.74	98.69	97.54	100.00	100.00	99.04	97.68	98.61	98.25	97.90	97.85	98.79	98.34	91.80	91.98	91.08	92.82	91.84	92.07	100.00	96.94	93.66	95.73	97.71	95.80	87.33	90.10	93.15	90.98	95.18	91.44	95.88	94.46	-1.42	0.630883	0.817497
K	cassette	NPLOC4	chr17	-	chr17:79526443-79532530	chr17:79526443-79530946;chr17:79531006-79532530		chr17:79530947-79531005			2.78	0.00	6.52	0.00	0.00	0.00	2.38	1.45	3.51	2.22	1.72	3.28	0.00	10.00	7.23	4.59	3.85	5.45	NA	0.00	0.00	0.00	0.00	3.03	NA	0.00	0.00	2.27	3.70	2.94	0.00	1.64	0.00	0.00	0.00	2.35	0.00	0.72	0.72	0.334481	0.709176
K	intron_retention	MYBPC3	chr11	-	chr11:47353268-47353395				chr11:47353267-47353268;chr11:47353395-47353396		21.74	29.41	11.76	NA	22.22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10.53	15.00	20.69	NA	21.43	NA	12.50	6.67	25.00	NA	NA	NA	12.50	12.90	9.52	NA	18.18	NA	11.52	13.75	2.23	0.972774	1.000000
K	jcn_only_AD	RPL38	chr17	+	chr17:72199850-72200056;chr17:72199910-72200056	chr17:72199885-72200056		chr17:72199850-72199884;chr17:72199885-72199909	chr17:72199849-72199850;chr17:72199884-72199885		85.29	83.00	83.76	85.58	86.87	85.05	83.86	79.86	84.31	78.03	76.21	76.66	83.33	86.21	85.28	85.47	77.01	78.04	88.41	87.14	87.62	87.21	89.83	86.38	84.06	87.07	83.45	87.16	90.30	88.87	89.11	88.01	86.60	87.23	84.66	87.58	83.96	86.64	2.68	0.577412	0.789094
N	intron_retention		chr1	+	chr1:2493164-2494303				chr1:2493163-2493164;chr1:2494303-2494304		100.00	87.91	78.57	84.21	81.93	82.05	100.00	100.00	100.00	95.45	100.00	100.00	90.48	100.00	96.77	94.12	95.83	NA	89.55	87.10	85.11	89.58	91.76	87.80	81.36	93.75	100.00	100.00	91.57	94.23	91.18	89.47	87.93	89.06	91.38	86.46	88.74	96.88	8.13	0.250375	1.000000
N	alternative_donor	MRPL52	chr14	+	chr14:23299154-23299258;chr14:23299150-23299258	chr14:23299158-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		9.52	13.95	8.89	8.00	12.12	17.86	4.00	NA	9.52	4.00	3.45	14.29	4.00	0.00	9.52	5.13	5.17	13.04	17.54	16.67	15.19	23.53	25.64	18.18	11.11	35.71	17.50	20.00	12.00	18.18	18.60	14.29	12.24	13.64	20.83	23.08	11.68	16.67	5.00	0.411445	0.675004
N	alternative_acceptor	SNRPD1	chr18	+	chr18:19202763-19203708;chr18:19202763-19203831	chr18:19202763-19203835		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		4.76	15.79	7.41	10.48	12.15	11.57	0.00	0.00	0.00	16.82	9.46	17.65	12.50	0.00	12.50	6.92	12.22	10.00	15.79	0.00	15.87	5.71	7.69	0.00	21.57	NA	13.64	0.00	8.70	0.00	0.00	8.00	15.58	0.00	9.23	0.00	15.68	0.00	-15.68	0.006745	0.405868
K	cassette	PRKAG1	chr12	-	chr12:49397074-49397539	chr12:49397074-49397340;chr12:49397379-49397539		chr12:49397341-49397378			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	96.36	91.30	100.00	96.97	97.62	100.00	97.44	96.15	96.67	94.34	100.00	90.62	93.62	100.00	100.00	98.48	-1.52	0.089371	0.652861
N	alternative_donor	ESYT2	chr7	-	chr7:158527163-158528193	chr7:158527163-158528107		chr7:158528108-158528193	chr7:158528193-158528194		0.00	0.00	2.08	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	1.15	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	TCIRG1	chr11	+	chr11:67810331-67811037	chr11:67810331-67810412;chr11:67810499-67811037		chr11:67810413-67810498			95.24	100.00	94.94	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.02	100.00	100.00	100.00	94.55	96.43	100.00	100.00	95.24	95.74	NA	90.62	97.30	100.00	100.00	100.00	0.00	0.174688	0.709176
K	intron_retention	ELOVL1	chr1	-	chr1:43831048-43831234				chr1:43831047-43831048;chr1:43831234-43831235		2.00	0.00	4.40	NA	3.12	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00	1.39	0.00	7.14	6.52	5.56	0.00	2.50	4.71	1.75	3.90	3.45	0.00	3.80	0.00	6.49	4.65	4.55	0.00	0.69	0.69	0.329876	1.000000
K	intron_retention	SBF1	chr22	-	chr22:50893839-50893909				chr22:50893838-50893839;chr22:50893909-50893910		6.45	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.23	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.03	NA	0.00	3.03	0.00	0.00	1.61	1.61	0.413763	1.000000
K	cassette	ACAA1	chr3	-	chr3:38173497-38178082	chr3:38173497-38175442;chr3:38175501-38178082		chr3:38175443-38175500			100.00	100.00	96.77	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	94.55	100.00	100.00	100.00	98.00	95.45	96.97	100.00	93.62	96.25	100.00	100.00	94.87	100.00	100.00	100.00	0.00	0.222077	0.709176
K	cassette	RNF135	chr17	+	chr17:29315125-29324259	chr17:29315125-29320857;chr17:29320923-29324259		chr17:29320858-29320922			8.11	15.91	2.70	NA	8.77	NA	9.26	6.98	6.45	NA	10.53	NA	10.45	9.43	0.00	0.00	10.20	NA	6.67	10.64	15.38	NA	8.47	NA	0.00	9.09	6.38	13.33	7.46	NA	5.41	5.13	3.57	0.00	8.33	NA	7.96	8.60	0.63	0.800246	0.936947
N	alternative_donor	EHBP1L1	chr11	+	chr11:65348594-65348681	chr11:65348598-65348681		chr11:65348594-65348597	chr11:65348593-65348594		90.32	81.82	89.26	NA	100.00	NA	100.00	96.61	97.06	100.00	100.00	100.00	100.00	98.23	100.00	100.00	97.67	NA	NA	87.88	79.31	NA	91.43	90.91	100.00	90.14	85.57	88.24	93.10	90.91	80.00	82.28	84.62	84.21	89.74	100.00	100.00	90.23	-9.77	0.592651	0.801588
K	intron_retention	TRIM28	chr19	+	chr19:59061228-59061315				chr19:59061227-59061228;chr19:59061315-59061316		3.23	1.58	1.84	1.43	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.53	0.00	0.34	0.00	2.39	2.33	2.84	2.00	1.73	1.19	0.00	0.00	1.23	0.00	1.23	0.72	10.48	6.75	4.93	2.60	2.70	0.00	1.04	1.17	0.12	0.821913	1.000000
N	jcn_only_AD	CYSTM1	chr5	+	chr5:139568768-139574030;chr5:139554871-139574030	chr5:139554789-139574030		chr5:139554789-139554870;chr5:139554871-139568767	chr5:139554788-139554789;chr5:139554870-139554871		1.51	0.00	5.71	0.00	0.00	0.00	0.00	1.61	0.00	2.68	2.32	2.65	2.20	1.70	0.00	0.00	0.64	0.00	0.00	2.25	1.23	0.00	2.74	0.00	0.00	2.14	0.00	0.00	4.82	3.03	1.75	1.67	0.00	0.00	0.00	0.00	0.00	1.73	1.73	0.008939	0.237005
K	alternative_donor	FIBP	chr11	-	chr11:65652658-65653000	chr11:65652658-65652979		chr11:65652980-65653000	chr11:65653000-65653001		10.94	3.57	6.76	13.64	8.22	8.16	5.97	13.73	11.32	4.08	8.00	7.14	11.11	8.00	5.71	13.64	8.43	6.38	8.04	7.58	10.84	4.76	8.00	8.33	8.22	10.53	9.52	15.00	10.29	11.76	7.27	8.22	7.75	12.90	3.64	12.77	7.89	9.27	1.37	0.155833	0.563271
K	intron_retention	QSOX1	chr1	+	chr1:180166026-180166467				chr1:180166025-180166026;chr1:180166467-180166468		86.36	90.16	86.95	90.20	88.49	89.83	89.11	86.84	78.51	91.55	90.57	92.68	87.68	77.19	80.37	85.48	88.46	88.89	83.97	85.17	80.73	90.00	92.11	95.16	76.71	81.07	83.35	86.27	88.99	89.55	85.65	86.25	86.42	94.39	92.57	90.48	87.05	85.41	-1.64	0.769722	1.000000
K	alternative_acceptor	AFTPH	chr2	+	chr2:64812680-64819021	chr2:64812680-64819018		chr2:64819019-64819021	chr2:64819021-64819022		38.46	10.00	41.67	NA	43.75	30.00	39.29	51.11	40.91	30.77	48.39	40.74	45.45	43.90	56.76	42.31	34.29	40.00	20.00	41.03	46.15	38.89	38.46	52.17	16.67	47.46	31.25	63.64	41.94	40.00	40.54	30.00	40.00	35.00	44.44	36.36	29.64	42.47	12.82	0.053345	0.570243
N	cassette	PCNP	chr3	+	chr3:101293124-101309058;chr3:101293124-101304280	chr3:101293124-101298633;chr3:101298849-101304280,chr3:101298849-101309058		chr3:101298634-101298848			74.42	66.67	88.31	90.00	70.00	66.67	85.71	89.04	89.47	85.53	87.78	83.10	86.54	88.71	84.69	79.75	85.44	87.72	73.33	88.64	95.45	75.61	78.43	79.55	NA	92.16	86.15	89.29	82.50	84.62	65.62	83.05	70.59	88.24	83.82	82.61	73.33	88.67	15.34	0.298629	0.709176
K	intron_retention	HECTD3	chr1	-	chr1:45471556-45471668				chr1:45471555-45471556;chr1:45471668-45471669		5.00	11.11	13.04	NA	NA	NA	2.56	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.70	0.00	3.45	0.00	NA	6.25	NA	11.76	14.29	0.00	0.00	0.00	8.57	0.00	11.11	NA	9.09	15.79	NA	10.34	21.21	12.50	1.28	2.50	1.22	0.341381	1.000000
N	jcn_only_AA	TUBGCP2	chr10	-	chr10:135101783-135102343	chr10:135101814-135102343		chr10:135101783-135101813	chr10:135101782-135101783		100.00	100.00	95.08	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.50	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	INTS9	chr8	-	chr8:28625840-28627405;chr8:28625894-28627405	chr8:28627265-28627405		chr8:28625840-28625893;chr8:28625894-28627264	chr8:28625839-28625840;chr8:28625893-28625894		4.55	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.363217	0.663989
N	intron_retention		chr2	+	chr2:85133242-85133489				chr2:85133241-85133242;chr2:85133489-85133490		59.38	55.26	64.00	59.09	50.00	45.63	NA	54.55	42.86	NA	NA	NA	NA	66.67	54.55	NA	NA	NA	54.76	44.12	36.84	58.33	50.00	60.00	60.53	44.44	51.85	82.61	71.43	58.97	43.59	51.52	54.55	53.85	NA	42.31	55.01	49.49	-5.52	0.434849	1.000000
N	alternative_donor	MTCH1	chr6	-	chr6:36949449-36952891;chr6:36949449-36953628	chr6:36949449-36952455		chr6:36952456-36952891;chr6:36952892-36953628	chr6:36952891-36952892;chr6:36953628-36953629		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.41	0.00	0.00	0.00	0.00	0.00	0.64	0.00	0.00	0.76	0.88	9.09	0.46	0.00	1.12	0.00	1.03	0.00	0.00	0.00	0.85	0.00	0.46	0.00	0.20	0.20	0.443195	0.703566
K	intron_retention	SERPINB6	chr6	-	chr6:2959577-2971766				chr6:2959576-2959577;chr6:2971766-2971767		7.89	6.67	5.88	NA	15.38	NA	0.00	0.00	2.86	0.00	0.00	0.00	1.92	0.00	2.86	4.76	0.00	7.14	NA	4.76	7.69	0.00	6.45	14.29	0.00	5.56	8.33	11.11	4.88	8.00	0.00	20.00	0.00	9.09	6.67	10.71	0.00	2.38	2.38	0.631610	1.000000
N	alternative_donor	TRPC4AP	chr20	-	chr20:33598092-33600810	chr20:33598092-33599883		chr20:33599884-33600810	chr20:33600810-33600811		0.68	7.14	0.57	NA	0.00	NA	0.00	0.00	0.52	0.00	0.00	0.00	0.00	0.43	0.47	0.00	0.00	0.00	NA	0.57	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.74	NA	1.52	0.00	0.83	0.00	0.50	0.50	0.508620	0.761403
N	alternative_acceptor	KLC1	chr14	+	chr14:104143861-104145744;chr14:104143861-104145645	chr14:104143861-104145720		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		85.19	82.19	72.88	71.43	74.63	78.43	73.47	76.27	72.73	78.00	81.67	80.95	78.79	71.62	70.83	69.12	73.08	72.09	75.00	80.00	81.94	75.00	72.73	80.00	73.44	82.26	80.65	78.57	77.27	81.40	81.40	73.91	83.02	75.00	74.19	76.92	76.90	80.70	3.80	0.510125	0.800006
N	alternative_acceptor	SLCO3A1	chr15	+	chr15:92706229-92715009	chr15:92706229-92706525		chr15:92706526-92715009	chr15:92715009-92715010		30.43	50.00	45.45	35.29	33.33	55.88	27.27	50.00	34.78	40.00	NA	35.00	NA	40.00	29.17	40.00	33.33	36.36	38.46	50.00	29.17	50.00	50.00	54.76	33.33	29.03	25.00	40.00	30.77	30.00	25.00	30.00	36.36	42.86	60.00	41.79	36.36	35.22	-1.14	0.956559	0.990505
N	cassette	STXBP2	chr19	+	chr19:7704694-7705785	chr19:7704694-7705583;chr19:7705696-7705785		chr19:7705584-7705695			100.00	100.00	97.01	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	91.07	NA	100.00	97.56	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr19	+	chr19:41313457-41313713				chr19:41313456-41313457;chr19:41313713-41313714		5.56	8.29	7.44	2.38	3.98	2.53	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	3.63	1.61	4.35	2.22	3.94	3.67	3.18	3.15	4.62	2.30	1.57	1.75	5.26	4.31	3.06	4.23	3.88	3.72	3.12	2.38	-0.74	0.981028	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7124378-7124856				chr17:7124377-7124378;chr17:7124856-7124857		6.49	5.88	7.53	0.00	2.38	NA	0.00	0.00	0.00	1.22	0.87	0.00	0.00	1.33	3.79	0.00	1.63	0.00	4.76	5.00	0.00	8.20	8.57	4.05	3.70	6.25	4.23	0.00	2.16	1.54	2.13	1.92	0.00	6.06	3.70	3.10	1.85	3.56	1.71	0.712743	1.000000
K	cassette	USP39	chr2	+	chr2:85868242-85875052	chr2:85868242-85872070;chr2:85872207-85875052		chr2:85872071-85872206			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	95.83	100.00	100.00	100.00	100.00	100.00	0.00	0.976759	0.995133
K	cassette	SCAMP3	chr1	-	chr1:155230451-155231876	chr1:155230451-155231447;chr1:155231526-155231876		chr1:155231448-155231525			71.11	65.38	63.49	NA	81.82	NA	80.52	77.78	64.63	83.00	72.64	78.57	89.77	69.84	71.43	76.54	84.13	84.42	80.00	73.81	66.67	80.77	77.05	75.86	NA	67.65	60.87	86.96	76.92	78.57	81.25	79.37	87.50	85.71	74.14	78.69	80.52	72.46	-8.06	0.188738	0.709176
K	intron_retention	NUDC	chr1	+	chr1:27271965-27272058				chr1:27271964-27271965;chr1:27272058-27272059		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	1.96	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.04	2.50	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.425612	1.000000
N	alternative_donor	SLC26A11	chr17	+	chr17:78225197-78226423;chr17:78225201-78226423;chr17:78226261-78226423	chr17:78225845-78226423		chr17:78225197-78225200;chr17:78225201-78225844;chr17:78225845-78226260	chr17:78225196-78225197;chr17:78225200-78225201;chr17:78225844-78225845		3.12	2.94	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	5.88	0.00	2.00	2.94	0.00	0.00	1.56	1.56	0.346492	0.650093
K	alternative_donor	GET4	chr7	+	chr7:924032-925692;chr7:916438-925692	chr7:917965-925692		chr7:916438-917964;chr7:917965-924031	chr7:916437-916438;chr7:917964-917965		0.00	0.00	3.03	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	CHCHD1	chr10	+	chr10:75542200-75542831				chr10:75542199-75542200;chr10:75542831-75542832		1.85	1.61	2.53	1.96	0.78	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	1.43	0.00	1.85	5.56	2.48	8.82	4.82	4.17	0.00	5.26	2.74	2.44	1.27	0.00	5.88	5.61	2.94	4.08	1.28	5.36	1.28	3.55	2.27	0.340226	1.000000
K	jcn_only_AD	ZBTB8OS	chr1	-	chr1:33099674-33100368	chr1:33099674-33100302		chr1:33100303-33100368	chr1:33100368-33100369		0.00	7.32	2.94	0.00	6.52	4.55	8.57	20.00	14.29	9.52	6.90	12.90	5.56	20.00	21.95	3.12	4.84	0.00	0.00	12.50	13.51	0.00	5.41	6.25	0.00	0.00	0.00	5.26	7.14	11.54	6.25	11.11	0.00	0.00	3.57	0.00	2.78	9.38	6.60	0.172956	0.657607
N	alternative_acceptor	SLC16A3	chr17	+	chr17:80195770-80218774;chr17:80195770-80196686	chr17:80195770-80196577		chr17:80196578-80196686;chr17:80196687-80218774	chr17:80196686-80196687;chr17:80218774-80218775		60.64	52.88	55.05	72.50	67.29	72.97	100.00	100.00	89.19	95.83	100.00	81.82	100.00	100.00	97.30	93.33	100.00	NA	78.18	84.09	73.73	90.00	75.95	69.23	83.02	82.61	82.95	92.86	92.73	88.89	62.07	57.95	58.62	85.37	80.36	71.88	80.60	83.35	2.75	0.801893	0.926022
N	alternative_acceptor	RHOT2	chr16	+	chr16:720774-720888;chr16:720774-720924	chr16:720774-720891		chr16:720889-720891;chr16:720892-720924	chr16:720891-720892;chr16:720924-720925		76.92	60.00	70.37	NA	NA	NA	100.00	100.00	84.62	81.82	92.86	NA	94.12	100.00	86.96	100.00	100.00	NA	NA	87.50	NA	75.00	85.19	85.71	85.71	76.47	73.33	NA	80.00	NA	73.33	66.67	70.00	73.33	72.73	72.73	85.71	82.21	-3.50	0.688094	0.881898
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12769322-12772073;chr19:12769328-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769325-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		96.61	90.91	91.07	NA	97.14	NA	96.54	97.67	97.90	96.57	96.20	96.58	96.28	96.67	96.33	95.16	96.04	97.59	78.57	95.56	83.33	89.66	85.95	89.80	86.67	91.18	90.53	91.67	89.09	90.00	91.67	88.75	81.25	91.76	84.76	91.62	88.79	96.09	7.30	0.091860	0.597021
N	cassette	VPS28	chr8	-	chr8:145651156-145651562	chr8:145651156-145651304;chr8:145651447-145651562		chr8:145651305-145651446			100.00	100.00	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	96.88	100.00	96.00	91.11	95.24	100.00	100.00	96.67	100.00	100.00	0.00	0.905205	0.971243
N	alternative_donor	IRF3,PEPD	chr19	-	chr19:50164086-50165401;chr19:50164086-50165204;chr19:50164086-50165441	chr19:50164086-50164706		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		22.50	18.95	33.33	NA	7.84	NA	0.00	5.26	6.67	NA	4.35	NA	2.63	0.00	7.69	NA	7.69	NA	9.21	16.00	15.07	NA	8.70	NA	17.59	16.00	17.19	NA	8.00	NA	29.17	28.33	13.33	30.77	22.22	38.46	11.27	16.00	4.73	0.424161	0.685712
N	jcn_only_AA	KAT7	chr17	+	chr17:76167731-76167931;chr17:76167731-76167846;chr17:76167731-76167879	chr17:76167731-76167819		chr17:76167820-76167846;chr17:76167847-76167879;chr17:76167880-76167931	chr17:76167846-76167847;chr17:76167879-76167880;chr17:76167931-76167932		98.92	100.00	98.27	100.00	98.40	100.00	100.00	99.65	99.77	100.00	99.80	100.00	99.46	100.00	100.00	100.00	100.00	100.00	93.98	96.26	98.35	98.02	97.95	97.54	100.00	99.10	98.68	100.00	98.77	100.00	95.58	97.70	93.15	97.71	98.76	98.94	99.73	99.01	-0.72	0.759528	0.892526
N	cassette	NPL	chr1	+	chr1:182763575-182781290;chr1:182763575-182767206;chr1:182763575-182772832	chr1:182763575-182764864;chr1:182764976-182767206,chr1:182764976-182772832,chr1:182764976-182781290		chr1:182764865-182764975			12.57	14.16	16.54	13.04	12.64	NA	7.30	8.73	7.23	6.27	4.90	6.65	4.61	7.34	10.29	5.61	4.36	4.02	14.58	14.20	13.11	15.79	15.53	12.41	2.17	14.93	15.29	9.46	15.17	14.52	17.78	20.24	9.80	13.21	14.61	16.26	8.55	13.38	4.83	0.175593	0.709176
K	intron_retention	AP2A2	chr11	+	chr11:926001-972217				chr11:926000-926001;chr11:972217-972218		80.00	71.43	78.95	NA	NA	NA	78.21	73.08	84.62	91.67	82.26	NA	75.83	83.33	81.25	71.43	84.72	NA	NA	100.00	NA	NA	71.79	NA	73.68	76.92	81.25	NA	82.61	NA	NA	NA	NA	68.75	75.00	66.67	74.75	80.00	5.25	0.455130	1.000000
K	intron_retention		chr7	+	chr7:100465856-100466116				chr7:100465855-100465856;chr7:100466116-100466117		0.00	0.00	13.04	NA	0.00	NA	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	0.00	4.26	0.00	4.76	1.72	0.00	6.45	8.70	0.00	4.55	8.70	3.03	0.00	0.00	0.00	0.474498	1.000000
K	cassette	NOSIP	chr19	-	chr19:50060507-50062153	chr19:50060507-50061318;chr19:50061457-50062153		chr19:50061319-50061456			0.00	0.85	1.11	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.73	0.00	0.00	5.00	1.35	1.63	0.00	0.00	0.00	0.00	1.47	2.50	0.00	4.35	0.00	0.00	0.41	0.00	-0.41	0.977636	0.995133
N	cassette	C1orf162	chr1	+	chr1:112018688-112019955;chr1:112018688-112020604;chr1:112018688-112020014	chr1:112018688-112019419;chr1:112019490-112019955,chr1:112019490-112020604,chr1:112019490-112020014		chr1:112019420-112019489			100.00	94.62	100.00	83.33	100.00	NA	100.00	100.00	NA	100.00	98.88	100.00	100.00	100.00	NA	100.00	99.46	100.00	95.83	100.00	100.00	100.00	97.96	100.00	93.75	100.00	96.83	100.00	98.98	100.00	100.00	100.00	95.31	100.00	100.00	98.08	95.57	100.00	4.43	0.028173	0.421674
N	jcn_only_AA	DGAT1	chr8	-	chr8:145540885-145540995	chr8:145540916-145540995		chr8:145540885-145540915	chr8:145540884-145540885		96.88	97.06	97.87	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	96.97	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.372399	0.663989
N	jcn_only_AA		chr3	+	chr3:49060202-49060310	chr3:49060202-49060308		chr3:49060309-49060310	chr3:49060310-49060311		96.77	100.00	95.73	100.00	96.69	100.00	96.43	97.33	98.26	97.70	96.30	100.00	96.40	98.75	97.17	98.06	97.73	100.00	98.59	95.65	96.67	100.00	98.67	100.00	100.00	100.00	100.00	100.00	100.00	96.83	96.61	97.47	94.74	94.92	97.70	97.89	97.51	97.05	-0.46	0.876580	0.952764
K	intron_retention	SHKBP1	chr19	+	chr19:41094686-41094987				chr19:41094685-41094686;chr19:41094987-41094988		7.25	8.45	7.33	0.00	9.30	4.76	0.00	2.14	1.16	0.00	0.00	0.00	1.38	0.00	3.26	0.00	0.76	0.00	8.24	8.70	5.71	13.16	14.29	5.56	11.34	10.12	14.43	7.55	7.89	8.16	9.18	10.10	6.59	8.86	9.01	4.76	7.42	7.97	0.56	0.646364	1.000000
N	coord_cassette	PSAP	chr10	-	chr10:73581765-73587770	chr10:73581765-73583644;chr10:73583654-73585593;chr10:73585651-73587770		chr10:73583645-73583653;chr10:73585594-73585650			100.00	100.00	97.56	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.43	100.00	99.35	98.74	98.34	100.00	98.82	100.00	97.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.509054	0.715788
K	intron_retention	BET1L	chr11	-	chr11:205668-205951				chr11:205667-205668;chr11:205951-205952		0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	5.13	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.476956	1.000000
K	cassette	PIN1	chr19	+	chr19:9946079-9949111	chr19:9946079-9947498;chr19:9947552-9949111		chr19:9947499-9947551			0.00	0.00	0.00	0.00	0.00	0.00	2.11	2.63	1.75	3.03	3.70	4.88	1.69	0.00	0.00	2.82	2.27	5.71	0.00	0.00	2.78	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.620618	0.862352
N	cassette	TSC22D4	chr7	-	chr7:100072064-100076416	chr7:100072064-100074899;chr7:100075083-100076416		chr7:100074900-100075082			85.53	95.08	83.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	88.89	91.67	87.72	91.11	90.00	91.84	100.00	100.00	94.92	86.00	100.00	94.12	95.45	86.79	77.78	83.33	100.00	89.47	94.12	97.54	91.32	-6.22	0.527526	0.803220
K	cassette	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62458614-62459847	chr11:62458614-62458751;chr11:62458894-62459847		chr11:62458752-62458893			95.18	89.13	100.00	92.11	96.34	95.08	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.90	92.59	94.38	100.00	97.06	90.00	90.00	97.92	92.73	100.00	100.00	95.45	93.10	96.05	89.60	92.98	95.24	93.98	92.95	96.48	3.53	0.437975	0.743123
K	mutually_exclusive	RAB34	chr17	-	chr17:27042141-27042236,chr17:27042295-27042473	chr17:27042141-27042212,chr17:27042233-27042473	chr17:27042237-27042294	chr17:27042213-27042232			44.55	50.98	48.48	47.83	48.42	41.67	42.86	42.11	41.05	50.00	38.46	NA	42.11	45.16	45.71	58.33	40.74	33.33	51.22	39.22	48.26	47.62	41.67	41.67	36.73	46.43	43.57	45.45	37.14	38.46	43.14	45.60	45.24	41.67	43.18	32.00	44.05	43.84	-0.20	0.588289	0.653655
N	alternative_acceptor	TP53I3	chr2	-	chr2:24300632-24302313	chr2:24300729-24302313		chr2:24300632-24300728	chr2:24300631-24300632		0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.17	0.00	1.43	0.00	0.00	9.09	0.00	0.00	7.69	0.00	1.79	0.00	0.00	0.00	3.92	0.00	0.00	0.00	1.08	0.00	-1.08	0.086946	0.586065
N	alternative_acceptor	VSIG4	chrX	-	chrX:65242009-65242682;chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242343-65242682	chrX:65242252-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		0.00	1.62	0.00	0.00	3.40	1.27	4.75	0.00	0.00	9.64	6.25	6.25	4.09	0.00	7.50	3.93	6.97	7.98	0.28	0.00	0.00	4.27	5.50	4.30	0.53	6.73	0.00	5.82	3.63	5.60	0.00	7.46	2.56	6.51	2.70	4.60	2.09	0.00	-2.09	0.404268	0.719489
N	alternative_donor	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007595;chr22:51007511-51007604;chr22:51007511-51007764	chr22:51007511-51007641		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		9.68	10.64	5.00	7.14	0.00	15.00	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	22.50	19.05	8.33	NA	10.00	NA	17.28	26.19	26.47	NA	NA	NA	12.90	13.79	10.53	NA	NA	NA	13.96	15.98	2.02	0.725072	0.886068
N	jcn_only_AA	RMDN1	chr8	-	chr8:87487144-87489522;chr8:87487826-87489522	chr8:87487183-87489522		chr8:87487144-87487182;chr8:87487183-87487825	chr8:87487143-87487144;chr8:87487182-87487183		91.30	91.49	78.38	81.25	90.00	78.95	71.88	87.50	83.33	82.14	81.67	82.61	90.62	86.67	83.33	85.71	83.33	73.33	78.26	100.00	88.24	NA	95.83	81.82	92.50	80.00	84.21	85.71	87.50	100.00	100.00	80.95	91.89	86.96	91.67	87.50	91.06	89.40	-1.66	0.344132	0.663989
N	jcn_only_AA	AP3S2,C15orf38-AP3S2	chr15	-	chr15:90395714-90414706;chr15:90380955-90414706;chr15:90404330-90414706	chr15:90408926-90414706		chr15:90380955-90395713;chr15:90395714-90404329;chr15:90404330-90408925	chr15:90380954-90380955;chr15:90395713-90395714;chr15:90404329-90404330		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	5.26	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	MYO18A	chr17	-	chr17:27401933-27409333	chr17:27408019-27409333		chr17:27401933-27408018	chr17:27401932-27401933		4.00	3.70	5.88	NA	3.12	NA	6.25	7.14	4.55	7.14	8.33	0.00	6.98	11.76	8.00	6.25	8.57	NA	5.26	5.26	4.17	6.25	3.45	3.33	4.44	6.82	5.71	6.25	5.71	0.00	3.64	2.41	5.71	6.90	7.89	4.65	5.48	6.04	0.56	0.451275	0.756508
N	alternative_donor		chr3	-	chr3:127294894-127295027;chr3:127294894-127295451	chr3:127294894-127295459		chr3:127295028-127295451;chr3:127295452-127295459	chr3:127295451-127295452;chr3:127295459-127295460		94.44	94.55	86.05	92.86	97.92	93.33	95.83	100.00	100.00	98.69	98.82	99.37	97.14	96.63	97.96	97.23	97.71	97.58	96.00	95.45	96.00	94.07	93.52	93.07	95.24	92.86	95.12	95.24	93.33	94.95	93.59	91.43	93.75	93.75	92.55	94.44	95.53	94.94	-0.59	0.949111	0.984606
K	intron_retention	UBA7	chr3	-	chr3:49848106-49848184				chr3:49848105-49848106;chr3:49848184-49848185		21.05	0.00	23.53	NA	NA	NA	0.00	1.56	0.00	0.00	0.00	0.00	0.00	2.00	11.11	0.00	0.00	7.14	NA	16.67	NA	NA	NA	NA	27.78	7.14	10.00	NA	NA	11.76	8.33	35.71	NA	NA	25.00	22.58	0.00	7.73	7.73	0.967858	1.000000
K	intron_retention		chr11	+	chr11:67051421-67051681				chr11:67051420-67051421;chr11:67051681-67051682		8.70	9.88	11.86	NA	13.24	NA	0.00	0.00	0.00	0.00	1.60	0.00	2.08	1.69	2.54	0.00	2.03	NA	11.54	5.81	6.78	5.26	9.09	0.00	19.18	5.00	10.06	0.00	8.05	0.00	11.63	9.93	14.49	7.14	12.50	2.22	10.71	5.40	-5.31	0.520944	1.000000
K	intron_retention		chr11	-	chr11:45935490-45935681				chr11:45935489-45935490;chr11:45935681-45935682		11.43	3.66	10.00	6.98	13.89	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	4.17	8.33	7.14	11.11	11.76	7.89	0.00	0.00	8.33	10.00	11.11	6.98	8.33	7.25	16.67	17.39	11.54	5.46	2.08	-3.37	0.895403	1.000000
N	jcn_only_AA		chr11	+	chr11:47436711-47437875;chr11:47436711-47436948	chr11:47436711-47436838		chr11:47436839-47436948;chr11:47436949-47437875	chr11:47436948-47436949;chr11:47437875-47437876		100.00	100.00	98.89	93.02	95.35	91.43	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	91.67	92.59	100.00	94.29	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	97.56	93.33	98.75	100.00	98.25	100.00	100.00	0.00	0.224098	0.663989
N	alternative_acceptor	CLN5	chr13	+	chr13:77570263-77574592	chr13:77570263-77572177		chr13:77572178-77574592	chr13:77574592-77574593		5.13	10.53	6.59	NA	5.26	8.33	1.89	4.00	3.23	2.86	1.45	3.57	2.17	4.65	3.57	3.23	1.59	3.45	7.69	6.52	5.88	8.33	5.41	9.52	NA	10.00	8.33	7.69	3.45	12.50	14.29	5.95	9.09	7.14	6.06	7.14	7.69	5.82	-1.87	0.644044	0.867760
N	cassette	EDEM2	chr20	-	chr20:33703737-33711692	chr20:33703737-33706400;chr20:33706523-33711692		chr20:33706401-33706522			93.33	100.00	100.00	100.00	93.88	100.00	100.00	95.16	92.11	89.29	95.65	100.00	92.16	96.23	100.00	86.96	92.00	92.59	100.00	95.77	93.24	100.00	95.00	100.00	100.00	100.00	96.72	100.00	90.48	95.83	95.83	97.33	94.74	92.11	100.00	95.74	100.00	95.80	-4.20	0.322579	0.709176
K	intron_retention	LYL1	chr19	-	chr19:13212010-13213344				chr19:13212009-13212010;chr19:13213344-13213345		8.00	3.80	9.09	NA	4.26	NA	0.00	0.00	NA	NA	0.00	NA	2.13	0.00	NA	NA	0.00	NA	6.45	NA	NA	NA	6.82	NA	0.00	0.00	6.25	NA	3.12	NA	NA	0.00	5.26	NA	4.55	NA	2.96	0.00	-2.96	0.651164	1.000000
N	alternative_donor		chr2	-	chr2:24306023-24307600	chr2:24306023-24307058		chr2:24307059-24307600	chr2:24307600-24307601		NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	alternative_acceptor	NMRK1	chr9	-	chr9:77682586-77683911;chr9:77681788-77683911	chr9:77681757-77683911		chr9:77681757-77681787;chr9:77681788-77682585	chr9:77681756-77681757;chr9:77681787-77681788		97.62	100.00	92.75	100.00	100.00	100.00	100.00	98.04	98.08	100.00	100.00	100.00	96.15	97.87	93.94	NA	92.31	90.00	100.00	95.00	97.22	90.91	97.67	94.12	100.00	91.03	94.12	93.75	91.84	94.44	94.55	93.67	95.00	95.65	88.89	89.06	100.00	96.31	-3.69	0.081825	0.585944
N	jcn_only_AD	RNF135	chr17	+	chr17:29324350-29325679;chr17:29324617-29325679	chr17:29324681-29325679		chr17:29324350-29324616;chr17:29324617-29324680	chr17:29324349-29324350;chr17:29324616-29324617		3.12	4.35	4.35	NA	5.21	NA	1.30	7.14	15.00	0.00	2.94	NA	3.31	8.11	3.77	0.00	2.04	NA	5.36	7.69	0.00	NA	0.00	NA	0.00	15.20	5.26	9.52	0.00	NA	17.19	6.78	3.28	5.56	4.55	11.11	3.29	7.90	4.61	0.024737	0.366050
K	alternative_donor	RPL38	chr17	+	chr17:72199850-72200056;chr17:72199910-72200056	chr17:72199885-72200056		chr17:72199850-72199884;chr17:72199885-72199909	chr17:72199849-72199850;chr17:72199884-72199885		72.73	69.07	70.27	73.05	75.16	72.24	70.34	64.63	71.22	61.93	59.38	60.00	69.84	74.03	72.54	72.87	60.50	61.90	77.86	75.68	76.42	75.77	79.95	74.37	70.71	75.41	69.74	75.65	80.99	78.32	78.46	76.97	74.62	75.74	71.58	76.69	70.53	74.72	4.19	0.567812	0.797216
K	intron_retention		chr11	-	chr11:72423614-72424220				chr11:72423613-72423614;chr11:72424220-72424221		6.38	20.00	8.43	NA	NA	NA	0.00	1.32	1.02	0.00	0.00	0.00	1.23	1.31	0.81	2.60	0.00	0.00	8.33	6.67	12.50	11.76	11.32	0.00	23.08	5.81	5.22	6.06	3.23	26.67	12.00	6.52	25.00	4.62	5.10	6.25	14.16	6.09	-8.07	0.447021	1.000000
K	intron_retention		chr13	+	chr13:115024874-115027361				chr13:115024873-115024874;chr13:115027361-115027362		11.76	16.67	11.11	0.00	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	5.26	0.00	0.00	0.00	4.00	9.09	4.76	0.00	4.84	6.25	0.00	0.00	3.45	0.00	5.26	0.00	NA	0.00	4.76	6.25	6.12	0.00	3.62	0.00	-3.62	0.766466	1.000000
K	jcn_only_AA	G6PD	chrX	-	chrX:153762712-153763382	chrX:153762715-153763382		chrX:153762712-153762714	chrX:153762711-153762712		3.95	13.51	6.25	8.33	9.62	NA	10.71	8.57	10.00	7.75	10.34	10.64	8.65	13.14	13.16	10.88	11.81	7.25	0.00	3.90	5.43	7.14	6.67	4.69	0.00	7.91	8.18	6.06	10.59	6.12	8.33	6.25	5.71	6.14	5.26	8.03	7.18	8.12	0.94	0.665178	0.851733
N	jcn_only_AD	DDX23,NCOR2	chr12	-	chr12:124820179-124821298	chr12:124820179-124821184		chr12:124821185-124821298	chr12:124821298-124821299		6.06	0.00	11.54	NA	0.00	NA	2.56	0.00	0.00	6.32	8.06	8.93	4.55	4.76	0.00	5.80	3.57	8.62	NA	0.00	NA	0.00	8.11	2.17	0.00	0.00	7.14	12.50	7.55	10.00	0.00	15.38	NA	11.36	3.08	7.89	1.28	0.00	-1.28	0.987500	0.994768
N	jcn_only_AA	LIMD2	chr17	-	chr17:61776474-61776616;chr17:61767958-61776616;chr17:61776430-61776616	chr17:61776299-61776616					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	POLR2A	chr17	+	chr17:7412952-7414533				chr17:7412951-7412952;chr17:7414533-7414534		0.00	5.41	2.05	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	11.11	1.37	4.00	0.00	0.00	0.00	6.45	1.19	6.67	1.65	0.98	2.08	5.41	0.00	-5.41	0.759305	1.000000
K	alternative_donor	PSMD13	chr11	+	chr11:244706-247276	chr11:244762-247276		chr11:244706-244761	chr11:244705-244706		89.19	96.30	97.56	93.33	96.43	NA	90.00	90.00	91.67	96.15	90.32	92.86	91.43	86.67	93.75	95.45	94.29	81.25	95.45	95.35	96.55	100.00	94.64	95.65	80.00	93.18	94.12	100.00	96.88	94.44	97.37	95.35	95.65	97.62	97.62	94.59	93.44	91.59	-1.85	0.874926	0.969355
K	coord_cassette	MLEC	chr12	+	chr12:121132073-121134118	chr12:121132073-121132626;chr12:121132804-121132897;chr12:121132956-121134118		chr12:121132627-121132803;chr12:121132898-121132955			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.08	100.00	97.56	100.00	100.00	100.00	98.33	99.13	100.00	96.77	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	96.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AD	TMEM176A	chr7	+	chr7:150498310-150498623;chr7:150498162-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497917-150498623;chr7:150497246-150498623	chr7:150498057-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		27.06	NA	31.40	NA	NA	NA	53.04	57.43	58.72	51.72	47.96	52.44	34.18	34.90	44.00	34.18	30.19	28.36	33.96	23.20	49.21	28.97	32.21	31.75	31.40	31.90	38.29	44.81	44.95	45.04	25.43	23.28	16.67	41.94	39.73	33.75	33.96	29.48	-4.48	0.946935	0.970791
K	intron_retention	RP11-54O7.14	chr1	+	chr1:990596-991277				chr1:990595-990596;chr1:991277-991278		94.66	96.58	97.44	97.56	100.00	99.27	95.35	94.44	94.90	100.00	96.88	100.00	93.48	96.23	100.00	100.00	100.00	100.00	95.77	94.44	95.74	93.33	100.00	100.00	100.00	95.88	95.83	94.55	100.00	95.61	95.38	98.73	100.00	95.12	100.00	96.92	96.17	95.02	-1.16	0.864019	1.000000
K	intron_retention	SREBF1	chr17	-	chr17:17716794-17716882				chr17:17716793-17716794;chr17:17716882-17716883		4.55	0.00	2.63	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	2.22	0.00	0.00	NA	0.00	3.33	0.00	0.00	0.00	0.00	3.33	5.71	4.76	5.26	0.00	4.76	0.00	3.33	3.33	0.832220	1.000000
N	jcn_only_AA	MS4A6A	chr11	-	chr11:59943473-59945732;chr11:59943007-59945732;chr11:59943085-59945732	chr11:59944889-59945732		chr11:59943007-59943084;chr11:59943085-59943472;chr11:59943473-59944888	chr11:59943006-59943007;chr11:59943084-59943085;chr11:59943472-59943473		6.36	11.15	10.53	2.78	2.33	5.56	0.75	3.29	0.00	1.53	1.91	1.88	1.95	1.41	NA	1.41	2.48	1.79	4.46	0.00	NA	1.72	3.57	1.38	11.38	5.88	0.00	0.00	2.14	2.21	NA	0.00	5.79	2.56	2.80	1.46	5.12	3.29	-1.83	0.286195	0.663989
K	cassette	DRAM1	chr12	+	chr12:102295212-102307951	chr12:102295212-102301963;chr12:102302142-102307951		chr12:102301964-102302141			98.60	100.00	97.09	96.61	96.43	98.67	97.32	98.54	96.25	97.63	97.73	98.96	100.00	98.28	97.53	97.94	96.08	97.77	90.48	98.65	100.00	98.54	97.85	98.69	NA	99.00	97.45	98.33	100.00	98.95	97.32	100.00	100.00	97.84	97.88	97.29	100.00	98.57	-1.43	0.674761	0.882035
K	alternative_acceptor	EIF4A1	chr17	+	chr17:7477627-7477865;chr17:7477627-7477839	chr17:7477627-7477863		chr17:7477840-7477863;chr17:7477864-7477865	chr17:7477863-7477864;chr17:7477865-7477866		97.15	100.00	96.85	96.06	100.00	94.29	97.22	97.83	97.58	97.49	96.77	97.74	98.18	98.55	99.57	97.34	96.07	98.23	100.00	97.97	100.00	97.05	97.12	96.33	100.00	96.77	96.12	97.18	96.94	99.55	96.70	96.80	99.05	96.13	96.11	97.43	99.53	97.49	-2.03	0.021912	0.532838
N	jcn_only_AD	DYRK4	chr12	+	chr12:4719442-4721708	chr12:4719451-4721708		chr12:4719442-4719450	chr12:4719441-4719442		100.00	85.19	94.74	95.83	93.94	94.87	100.00	100.00	100.00	96.97	100.00	91.89	90.24	NA	100.00	100.00	92.68	92.50	92.11	NA	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	96.06	100.00	3.94	0.091035	0.635075
K	jcn_only_AD	AD000671.6,U2AF1L4	chr19	-	chr19:36234806-36234970	chr19:36234806-36234912		chr19:36234913-36234970	chr19:36234970-36234971		13.33	14.47	13.33	14.81	6.58	7.27	11.76	NA	17.39	NA	NA	27.27	11.11	14.29	9.09	NA	10.00	NA	8.77	20.00	10.00	18.18	15.00	0.00	10.53	10.00	8.33	17.65	5.56	14.29	21.74	15.79	13.04	7.41	12.00	17.24	11.43	14.29	2.86	0.125214	0.657607
K	jcn_only_AA	MAP4K4,TTLL4	chr2	+	chr2:219618393-219618953	chr2:219618393-219618856		chr2:219618857-219618953	chr2:219618953-219618954		94.12	100.00	100.00	100.00	92.86	NA	94.12	NA	NA	95.45	96.00	NA	88.24	NA	100.00	97.14	100.00	NA	100.00	100.00	92.59	100.00	92.86	NA	100.00	93.33	100.00	92.86	96.30	NA	91.67	86.96	89.66	94.59	94.83	94.44	97.06	93.72	-3.34	0.851303	0.940358
N	jcn_only_AD	TTC7A	chr2	+	chr2:47205314-47205930;chr2:47205389-47205930	chr2:47202243-47205930		chr2:47202243-47205313;chr2:47205314-47205388	chr2:47202242-47202243;chr2:47205313-47205314		84.00	100.00	100.00	NA	NA	NA	100.00	66.67	100.00	NA	96.43	NA	96.23	75.00	100.00	NA	98.28	NA	NA	84.00	NA	NA	97.30	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	100.00	90.48	100.00	100.00	84.00	-16.00	0.048267	0.500386
N	alternative_donor	ATG16L2	chr11	+	chr11:72536453-72537217	chr11:72536521-72537217		chr11:72536453-72536520	chr11:72536452-72536453		0.00	0.00	3.45	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	1.92	NA	0.00	NA	5.26	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.391002	0.657675
K	intron_retention		chr14	-	chr14:20915850-20916062				chr14:20915849-20915850;chr14:20916062-20916063		0.00	3.93	9.09	3.57	5.77	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.23	2.13	0.00	3.73	15.00	5.13	0.00	6.33	7.14	5.19	0.00	7.14	5.88	7.58	0.00	6.67	5.41	1.61	3.33	7.14	6.06	2.67	3.33	0.67	0.800529	1.000000
K	cassette	RSRC2	chr12	-	chr12:122995736-122999651	chr12:122995736-122999258;chr12:122999276-122999651		chr12:122999259-122999275			1.96	14.29	1.39	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	NA	2.13	5.88	0.00	2.38	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.50	2.33	9.09	0.00	2.56	1.18	4.54	0.98	-3.56	0.272789	0.709176
K	intron_retention		chr6	-	chr6:31655881-31656025				chr6:31655880-31655881;chr6:31656025-31656026		1.23	8.79	3.03	11.11	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	1.25	0.00	0.00	0.00	0.00	2.44	0.00	0.00	4.48	3.45	0.00	1.53	2.02	4.65	5.36	4.88	2.30	3.48	1.64	2.70	2.50	3.37	0.44	1.38	0.94	0.998125	1.000000
K	cassette	AGTRAP	chr1	+	chr1:11796293-11807496	chr1:11796293-11805859;chr1:11805895-11807496		chr1:11805860-11805894			97.37	100.00	94.06	100.00	92.59	NA	100.00	100.00	98.70	100.00	100.00	100.00	100.00	99.13	99.12	100.00	96.55	100.00	100.00	95.45	98.51	100.00	100.00	100.00	100.00	95.83	95.41	96.00	100.00	100.00	96.67	96.15	100.00	100.00	100.00	96.88	100.00	97.02	-2.98	0.017490	0.373030
K	intron_retention	PCNXL3	chr11	+	chr11:65403275-65403644				chr11:65403274-65403275;chr11:65403644-65403645		26.67	0.00	14.29	NA	20.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	8.33	NA	9.09	NA	10.00	13.33	NA	NA	15.79	NA	NA	4.35	23.81	NA	NA	NA	14.29	18.52	7.69	NA	9.09	6.67	0.00	8.84	8.84	0.311775	1.000000
N	jcn_only_AA	SUGP2	chr19	-	chr19:19104550-19105174;chr19:19101959-19105174	chr19:19104609-19105174		chr19:19101959-19104549;chr19:19104550-19104608	chr19:19101958-19101959;chr19:19104549-19104550		4.55	0.00	4.26	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.76	0.00	0.00	12.50	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.234358	0.663989
K	cassette	INF2	chr14	+	chr14:105181194-105185131	chr14:105181194-105181620;chr14:105181678-105185131		chr14:105181621-105181677			28.57	49.15	62.50	50.00	65.85	53.06	60.53	34.78	43.48	72.92	76.67	67.86	70.37	38.89	55.00	82.05	70.59	76.00	61.54	35.71	29.17	82.61	67.92	57.69	71.88	47.37	61.11	76.00	65.85	68.75	58.82	65.38	59.46	70.59	67.35	61.11	61.03	37.30	-23.73	0.003539	0.211851
N	alternative_donor	MALAT1	chr11	+	chr11:65271678-65271796	chr11:65271699-65271796		chr11:65271678-65271698	chr11:65271677-65271678		96.23	93.81	92.81	81.82	NA	70.59	NA	93.55	84.85	NA	NA	NA	86.96	91.30	79.45	73.33	75.00	NA	91.30	100.00	87.50	100.00	91.30	87.10	100.00	88.24	94.00	90.00	90.62	83.64	80.95	80.00	100.00	90.24	96.88	89.29	93.81	92.42	-1.39	0.484746	0.744342
K	intron_retention		chr22	+	chr22:40805023-40805253				chr22:40805022-40805023;chr22:40805253-40805254		53.85	43.88	46.43	58.82	40.00	30.00	0.00	NA	0.00	NA	6.67	NA	9.68	16.67	30.77	NA	15.38	NA	46.27	35.71	33.33	NA	38.46	NA	36.99	30.77	35.71	25.00	42.42	23.81	36.36	38.71	28.95	37.50	42.31	36.84	32.97	35.71	2.74	0.775239	1.000000
N	jcn_only_AA		chrX	+	chrX:15838440-15840967	chrX:15838440-15840853		chrX:15840854-15840967	chrX:15840967-15840968		100.00	86.30	90.91	NA	92.00	87.50	NA	100.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	91.30	NA	87.50	NA	82.93	100.00	100.00	NA	100.00	81.82	100.00	86.96	83.61	100.00	100.00	90.00	86.30	100.00	13.70	0.072475	0.663989
N	alternative_acceptor	CHI3L1	chr1	-	chr1:203150414-203151858	chr1:203151433-203151858		chr1:203150414-203151432	chr1:203150413-203150414		1.07	1.35	1.07	0.00	0.00	NA	0.19	0.33	0.05	0.47	0.36	0.48	1.05	0.00	0.00	2.08	0.00	0.00	0.00	0.93	0.56	1.90	0.84	6.25	4.76	1.38	0.65	1.87	0.86	1.48	0.63	0.36	0.00	1.93	1.36	3.12	0.62	0.78	0.16	0.540986	0.821220
N	alternative_acceptor	PPP1R15A	chr19	+	chr19:49375909-49376481;chr19:49375909-49377130	chr19:49375909-49376486		chr19:49376482-49376486;chr19:49376487-49377130	chr19:49376486-49376487;chr19:49377130-49377131		0.28	2.38	0.67	0.71	1.72	9.38	0.00	0.31	0.65	0.00	0.74	0.00	0.00	0.58	0.64	0.19	0.00	0.00	5.00	0.26	1.96	0.18	0.41	0.17	9.38	0.22	1.08	0.38	0.88	0.48	0.17	0.35	3.03	0.17	0.49	0.20	2.71	0.27	-2.44	0.092775	0.597021
K	intron_retention	DHPS	chr19	-	chr19:12788026-12788104				chr19:12788025-12788026;chr19:12788104-12788105		8.70	28.12	16.13	7.69	13.79	4.35	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.08	0.00	0.00	0.00	16.00	12.50	5.00	40.00	18.75	NA	13.64	0.00	3.12	13.33	20.00	12.00	21.05	21.88	17.65	NA	NA	21.05	14.82	4.35	-10.47	0.698259	1.000000
N	alternative_acceptor	CSE1L	chr20	+	chr20:47710824-47711268	chr20:47710824-47711014		chr20:47711015-47711268	chr20:47711268-47711269		0.00	3.77	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.86	0.00	0.00	0.00	0.00	8.33	2.00	2.50	0.00	0.00	0.94	0.00	-0.94	0.835453	0.940678
N	alternative_acceptor		chr19	+	chr19:17690419-17691344;chr19:17690419-17690826;chr19:17690419-17691230;chr19:17690419-17690895	chr19:17690419-17691507		chr19:17690827-17690895;chr19:17690896-17691230;chr19:17691231-17691344;chr19:17691345-17691507	chr19:17690895-17690896;chr19:17691230-17691231;chr19:17691344-17691345;chr19:17691507-17691508		93.90	91.67	87.16	NA	92.31	NA	97.50	100.00	95.77	95.76	94.90	100.00	96.56	93.15	92.31	94.40	93.60	100.00	100.00	92.86	86.67	83.33	87.94	84.00	94.29	89.19	90.12	89.13	88.54	100.00	100.00	86.54	95.45	91.36	88.80	93.85	96.00	93.53	-2.48	0.627091	0.856144
N	cassette	LACC1	chr13	+	chr13:44463119-44465584	chr13:44463119-44464249;chr13:44464411-44465584		chr13:44464250-44464410			84.09	100.00	66.10	NA	76.47	NA	83.52	85.00	84.21	78.95	85.66	100.00	89.14	85.33	86.96	88.00	90.94	100.00	NA	76.92	NA	100.00	88.76	100.00	NA	90.62	82.61	90.48	93.94	NA	77.78	58.33	75.00	82.81	86.52	70.59	86.33	84.55	-1.78	0.556002	0.821548
K	jcn_only_AD	PSMC3	chr11	-	chr11:47447502-47447667;chr11:47447502-47447755	chr11:47447502-47447683		chr11:47447668-47447683;chr11:47447684-47447755	chr11:47447683-47447684;chr11:47447755-47447756		0.00	0.00	0.00	NA	0.00	NA	1.47	1.96	3.64	3.61	0.00	0.00	2.67	1.75	1.56	0.83	1.09	0.00	0.00	3.03	0.00	0.00	3.28	0.00	0.00	0.00	2.63	5.41	0.00	2.08	3.57	0.00	0.00	0.00	0.00	2.13	0.00	1.85	1.85	0.210511	0.657607
K	jcn_only_AA	MFSD7	chr4	-	chr4:680414-682781	chr4:680480-682781		chr4:680414-680479	chr4:680413-680414		100.00	94.74	92.86	100.00	94.12	100.00	97.92	100.00	95.00	95.00	96.00	100.00	96.30	100.00	100.00	92.59	100.00	NA	96.30	90.91	90.48	87.50	100.00	85.71	100.00	100.00	100.00	100.00	100.00	90.91	93.33	94.74	96.61	92.86	95.45	100.00	96.45	100.00	3.55	0.836492	0.935389
N	jcn_only_AD	RPL15	chr3	+	chr3:23958936-23959340;chr3:23958665-23959340;chr3:23958731-23959340	chr3:23958787-23959340		chr3:23958665-23958730;chr3:23958731-23958786;chr3:23958787-23958935	chr3:23958664-23958665;chr3:23958730-23958731;chr3:23958786-23958787		3.96	0.00	4.09	2.50	1.37	3.57	3.97	7.14	5.83	3.41	1.45	2.16	3.42	4.85	6.64	5.13	2.15	3.47	4.17	5.56	3.33	4.97	2.30	3.29	0.00	7.25	5.17	5.77	2.09	2.78	1.85	3.27	2.25	4.55	7.78	4.33	2.83	5.21	2.37	0.034114	0.443150
N	jcn_only_AD	CUEDC1	chr17	-	chr17:55957100-55962589	chr17:55957100-55962532		chr17:55962533-55962589	chr17:55962589-55962590		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	2.70	0.00	8.33	7.14	0.00	NA	2.50	6.90	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	6.25	0.00	0.00	0.00	0.175082	0.657607
K	cassette	PTP4A2	chr1	-	chr1:32377428-32384570	chr1:32377428-32381495;chr1:32381589-32384570		chr1:32381496-32381588			89.86	92.13	90.00	83.78	94.68	93.75	90.71	92.24	88.83	88.04	93.25	93.75	90.65	91.30	89.30	88.04	95.16	92.59	91.07	93.58	84.18	94.55	91.59	95.00	86.84	87.38	87.29	88.00	91.67	84.00	88.57	87.63	94.74	95.06	90.41	93.75	90.89	90.58	-0.31	0.712731	0.897327
N	alternative_donor	SNN	chr16	+	chr16:11764019-11769830;chr16:11764564-11769830;chr16:11762397-11769830	chr16:11769026-11769830		chr16:11762397-11764018;chr16:11764019-11764563;chr16:11764564-11769025	chr16:11762396-11762397;chr16:11764018-11764019;chr16:11764563-11764564		5.26	0.00	5.88	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.74	0.00	0.00	0.00	3.70	0.00	1.61	0.00	1.83	0.00	1.85	NA	0.00	0.00	0.00	2.70	NA	0.00	2.56	4.17	1.32	0.00	2.28	2.28	0.045397	0.377550
N	cassette	EIF3M	chr11	+	chr11:32605476-32610139;chr11:32605476-32611092	chr11:32605476-32608591;chr11:32608691-32610139,chr11:32608691-32611092		chr11:32608592-32608690			75.00	77.42	67.39	62.50	75.86	54.55	80.00	82.35	78.57	77.50	80.65	64.44	77.27	72.22	72.73	70.00	73.21	81.08	NA	85.71	82.61	79.25	83.33	75.93	NA	71.43	78.12	71.79	76.19	62.16	76.92	79.31	78.57	77.27	83.72	83.33	78.00	75.96	-2.03	0.680652	0.883836
N	jcn_only_AA	EEF1D	chr8	-	chr8:144662928-144663223;chr8:144662803-144663223	chr8:144662898-144663223		chr8:144662803-144662897;chr8:144662898-144662927	chr8:144662802-144662803;chr8:144662897-144662898		95.65	96.24	96.72	96.49	95.75	94.40	96.94	100.00	98.12	97.34	96.75	100.00	97.47	100.00	96.07	97.23	100.00	100.00	92.85	92.61	93.82	94.76	95.36	94.03	95.59	96.43	96.34	95.85	96.01	95.36	90.88	93.06	91.41	95.75	95.76	96.64	95.91	96.04	0.13	0.653757	0.846812
N	coord_cassette	SLC27A3	chr1	+	chr1:153751030-153751818	chr1:153751030-153751321;chr1:153751362-153751589;chr1:153751688-153751818		chr1:153751322-153751361;chr1:153751590-153751687			100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	NA	93.33	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	100.00	0.00	0.373901	0.643829
K	alternative_donor	GRHPR	chr9	+	chr9:37422803-37424841	chr9:37422831-37424841		chr9:37422803-37422830	chr9:37422802-37422803		72.73	63.89	66.67	NA	66.67	NA	87.80	80.00	76.00	74.07	74.36	75.00	68.75	80.00	73.91	75.68	65.85	76.47	80.00	NA	73.33	80.00	81.82	NA	54.55	63.64	73.68	80.00	79.31	76.92	NA	63.64	81.82	70.59	60.00	83.33	74.38	76.37	1.99	0.845842	0.957804
N	alternative_acceptor	ADH5	chr4	-	chr4:99996201-99997442	chr4:99996273-99997442		chr4:99996201-99996272	chr4:99996200-99996201		0.00	2.74	1.52	0.00	1.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.92	1.28	0.00	0.92	0.00	0.00	0.00	5.45	0.00	0.00	4.00	1.92	2.82	1.37	1.72	2.41	0.00	0.69	0.00	-0.69	0.613434	0.853341
K	intron_retention	STAT6	chr12	-	chr12:57496280-57496611				chr12:57496279-57496280;chr12:57496611-57496612		0.00	4.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.72	0.00	-0.72	0.424602	1.000000
K	alternative_last_exon	RPS3	chr11	+	chr11:75115913-75132770	chr11:75115913-75116657,chr11:75115913-75116626	chr11:75132771-75133324	chr11:75116658-75116732			93.90	96.60	91.84	99.48	99.04	99.37	98.80	97.78	94.12	98.61	98.85	98.15	99.66	97.37	96.67	99.55	98.55	100.00	98.15	94.83	96.94	97.28	97.72	97.39	98.39	95.24	95.59	99.25	99.33	99.52	94.12	92.62	97.29	98.78	98.67	98.28	98.27	95.03	-3.24	0.010896	0.161746
N	alternative_donor	FMNL1	chr17	+	chr17:43309818-43310590;chr17:43309806-43310590	chr17:43309848-43310590		chr17:43309806-43309817;chr17:43309818-43309847	chr17:43309805-43309806;chr17:43309817-43309818		68.25	80.95	62.99	NA	83.33	NA	63.83	65.28	53.75	68.18	72.46	69.57	66.18	68.75	53.54	55.77	68.13	66.67	NA	66.10	58.33	53.33	60.38	60.00	77.78	68.57	66.23	52.17	60.53	NA	65.22	56.94	60.00	58.97	62.50	60.53	66.18	67.17	0.99	0.544922	0.780071
K	intron_retention	B3GAT3	chr11	-	chr11:62384820-62387968				chr11:62384819-62384820;chr11:62387968-62387969		4.00	0.00	3.57	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	1.92	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.78	NA	0.00	0.00	6.98	0.00	8.00	NA	0.00	0.00	10.00	0.00	4.55	9.52	0.00	0.00	0.00	0.805678	1.000000
N	alternative_donor	SUMF2	chr7	+	chr7:56142446-56144526;chr7:56142333-56144526	chr7:56142430-56144526		chr7:56142333-56142429;chr7:56142430-56142445	chr7:56142332-56142333;chr7:56142429-56142430		100.00	97.37	97.37	90.00	96.43	NA	96.77	91.67	96.83	91.84	96.34	89.47	96.81	100.00	94.52	98.04	98.39	92.86	100.00	95.45	100.00	90.62	91.84	97.56	92.59	93.33	97.06	91.67	92.11	93.33	95.65	93.33	88.00	92.31	90.91	95.12	96.79	95.55	-1.24	0.741099	0.891105
K	alternative_first_exon	RGS10	chr10	-	chr10:121286937-121301306;chr10:121286937-121302101	chr10:121286937-121295975	chr10:121302102-121302220	chr10:121295976-121296045			0.00	1.69	0.00	0.00	1.21	0.00	5.29	0.00	0.00	2.10	1.81	2.94	3.91	0.00	0.00	0.53	0.91	0.74	0.00	0.00	0.00	4.55	1.15	4.17	0.00	0.00	0.00	2.22	1.49	1.72	0.00	0.00	1.47	0.00	0.00	0.00	1.58	0.00	-1.58	0.064626	0.203003
K	intron_retention	ARHGAP9	chr12	-	chr12:57870747-57870938				chr12:57870746-57870747;chr12:57870938-57870939		0.00	0.00	5.26	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	18.75	0.00	0.00	0.00	0.00	NA	NA	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	NCAPH2	chr22	+	chr22:50957750-50959393				chr22:50957749-50957750;chr22:50959393-50959394		3.03	2.04	9.68	0.00	5.41	0.00	0.00	NA	NA	0.00	0.00	0.00	3.33	NA	NA	0.00	3.85	NA	3.70	15.79	15.00	0.00	7.69	NA	3.45	19.05	9.09	NA	4.76	10.00	3.33	8.00	5.56	15.79	0.00	0.00	3.39	9.56	6.17	0.525030	1.000000
K	alternative_acceptor	SNAPC1,SRSF5	chr14	+	chr14:70235969-70237183	chr14:70235969-70236227		chr14:70236228-70237183	chr14:70237183-70237184		50.44	27.91	60.40	34.48	45.10	25.00	13.75	14.50	15.38	6.54	14.41	4.21	24.71	15.74	29.92	12.61	9.40	5.05	37.50	44.12	27.42	57.30	54.63	47.27	NA	57.14	52.98	46.15	57.28	32.58	58.33	63.27	29.41	51.43	62.07	61.43	27.91	47.28	19.37	0.180971	0.660713
K	cassette	CMC1	chr3	+	chr3:28357915-28360999	chr3:28357915-28358243;chr3:28358351-28360999		chr3:28358244-28358350			1.54	1.11	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	1.23	0.00	0.00	0.00	6.67	0.00	2.86	5.26	5.00	0.00	0.00	3.95	1.52	0.00	2.56	3.03	1.31	0.00	-1.31	0.189644	0.709176
K	alternative_acceptor	TNK2	chr3	-	chr3:195597250-195599146;chr3:195597276-195599146	chr3:195597077-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		92.59	91.30	96.30	NA	NA	NA	100.00	96.23	95.56	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	94.12	NA	NA	92.00	100.00	100.00	96.49	100.00	100.00	92.31	NA	100.00	100.00	NA	93.33	NA	100.00	100.00	96.36	-3.64	0.637648	0.862563
N	intron_retention		chr5	-	chr5:176729180-176729365				chr5:176729179-176729180;chr5:176729365-176729366		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	97.06	100.00	95.83	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.31	100.00	100.00	100.00	0.00	0.629122	1.000000
K	cassette	RBM3	chrX	+	chrX:48434056-48434701	chrX:48434056-48434202;chrX:48434472-48434701		chrX:48434203-48434471			7.48	3.70	5.82	4.08	4.35	0.00	2.29	5.13	9.41	2.42	2.05	0.87	2.87	5.44	6.91	2.15	2.05	1.21	0.00	7.21	4.76	5.83	4.43	5.62	9.09	13.43	10.48	6.32	7.95	5.23	8.51	12.05	3.70	4.45	4.11	4.25	3.29	7.35	4.06	0.034308	0.463395
N	coord_cassette	SDS	chr12	-	chr12:113835198-113836916	chr12:113835198-113836319;chr12:113836412-113836511;chr12:113836652-113836916		chr12:113836320-113836411;chr12:113836512-113836651			99.49	100.00	98.25	NA	98.61	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	99.05	100.00	100.00	100.00	99.54	100.00	100.00	100.00	98.45	98.96	88.57	100.00	98.51	100.00	100.00	100.00	0.00	0.452214	0.692112
N	alternative_acceptor	MAD2L2	chr1	-	chr1:11740667-11741095	chr1:11740671-11741095		chr1:11740667-11740670	chr1:11740666-11740667		95.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.30	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
N	alternative_donor	TMEM176A	chr7	+	chr7:150498310-150498623;chr7:150498057-150498623;chr7:150498162-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497246-150498623	chr7:150497917-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		66.67	NA	60.00	NA	NA	NA	25.00	28.07	28.21	31.82	26.67	33.33	53.33	50.00	46.55	57.14	63.16	70.00	61.11	67.80	37.84	68.75	56.41	63.16	61.11	56.98	51.82	46.43	43.24	45.83	68.00	68.25	NA	NA	53.85	57.14	57.22	61.83	4.61	0.587308	0.799662
N	alternative_donor	N4BP2L1	chr13	-	chr13:32976039-32976843;chr13:32976039-32977286	chr13:32976039-32977044		chr13:32976844-32977044;chr13:32977045-32977286	chr13:32977044-32977045;chr13:32977286-32977287		46.67	33.33	33.66	11.11	10.00	2.60	37.93	37.50	54.90	42.65	NA	68.82	38.10	36.36	36.92	36.00	38.46	44.65	NA	51.19	20.59	48.68	25.00	54.97	8.33	55.06	48.61	52.17	NA	39.00	28.57	30.08	14.29	33.93	30.00	53.53	33.33	42.09	8.76	0.067913	0.445905
N	alternative_donor	DNAJB12	chr10	-	chr10:74094376-74095537;chr10:74094376-74095591;chr10:74094376-74095543	chr10:74094376-74095360		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		15.38	5.45	12.77	6.67	4.35	1.69	8.33	12.50	13.51	12.90	4.88	4.35	9.68	10.34	13.16	11.43	7.50	0.00	3.70	7.41	5.56	10.00	8.11	10.53	2.04	8.00	10.53	8.00	13.79	12.90	8.33	12.50	2.04	7.69	7.89	10.26	4.58	9.34	4.76	0.018825	0.268385
N	alternative_donor	GMFG	chr19	-	chr19:39819714-39820245;chr19:39819714-39820183	chr19:39819714-39820187		chr19:39820184-39820187;chr19:39820188-39820245	chr19:39820187-39820188;chr19:39820245-39820246		2.94	2.57	3.41	2.61	1.77	2.11	2.13	1.14	0.00	1.15	3.12	2.06	2.05	1.33	0.00	4.08	3.64	4.76	3.52	3.23	4.32	1.89	3.45	1.67	2.65	3.51	3.08	1.32	1.89	2.42	4.88	4.00	2.64	3.12	2.67	5.43	2.60	3.08	0.48	0.703029	0.872665
N	intron_retention		chr16	+	chr16:31343124-31343558				chr16:31343123-31343124;chr16:31343558-31343559		100.00	91.87	100.00	83.61	88.81	74.79	88.66	87.50	90.91	78.69	88.54	84.38	85.71	84.62	NA	86.15	85.92	85.71	82.58	100.00	84.52	96.36	93.10	96.23	75.89	82.35	91.38	86.05	93.51	86.87	91.30	92.42	78.89	92.63	91.79	92.31	84.14	89.40	5.26	0.294375	1.000000
N	alternative_donor	SLC4A2	chr7	+	chr7:150771187-150771485	chr7:150771381-150771485		chr7:150771187-150771380	chr7:150771186-150771187		96.47	89.66	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	98.70	97.40	97.73	100.00	100.00	96.67	94.52	100.00	93.22	93.33	93.44	100.00	99.35	-0.65	0.850658	0.958191
N	alternative_acceptor	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500583;chr10:35495980-35500588;chr10:35495980-35498239	chr10:35495980-35500181		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		72.96	77.78	75.70	71.64	80.61	62.16	87.04	78.48	72.00	80.39	80.95	72.86	84.00	78.04	71.88	80.00	78.79	72.73	73.91	71.21	70.67	83.87	88.46	75.00	69.35	69.14	71.33	81.52	83.81	70.89	77.30	80.13	80.00	83.85	81.48	82.01	78.89	75.13	-3.76	0.215770	0.671511
N	alternative_acceptor	EVL	chr14	+	chr14:100608131-100610044;chr14:100608131-100610037;chr14:100608131-100610350	chr14:100608131-100608344		chr14:100608345-100610037;chr14:100610038-100610044;chr14:100610045-100610350	chr14:100610037-100610038;chr14:100610044-100610045;chr14:100610350-100610351		3.85	2.33	NA	0.00	2.02	0.00	1.08	0.00	0.00	0.00	1.75	0.00	2.17	0.00	NA	0.00	2.94	NA	0.79	6.25	2.33	NA	2.35	0.00	0.67	7.14	NA	7.69	2.38	0.00	0.00	NA	0.88	7.69	3.12	0.00	0.98	1.93	0.95	0.310547	0.709013
N	jcn_only_AA	AP3D1	chr19	-	chr19:2109344-2109871;chr19:2109125-2109871	chr19:2109207-2109871		chr19:2109125-2109206;chr19:2109207-2109343	chr19:2109124-2109125;chr19:2109206-2109207		95.06	93.62	96.39	95.83	92.31	90.00	95.24	97.83	95.00	98.39	98.25	96.43	96.55	96.36	98.15	93.33	98.11	100.00	100.00	94.83	100.00	96.08	95.77	98.28	100.00	97.78	97.59	96.23	100.00	94.12	95.65	96.25	97.14	96.15	93.42	95.51	96.84	96.00	-0.84	0.495984	0.751225
N	alternative_acceptor	CALM3	chr19	+	chr19:47109115-47111461;chr19:47109115-47111453;chr19:47109115-47111455	chr19:47109115-47109372		chr19:47109373-47111453;chr19:47111454-47111455;chr19:47111456-47111461	chr19:47111453-47111454;chr19:47111455-47111456;chr19:47111461-47111462		5.63	0.91	21.24	1.25	0.60	6.21	0.41	0.00	2.08	0.00	0.00	0.00	1.01	2.13	6.52	0.00	0.60	0.00	1.02	7.46	9.57	1.43	1.59	2.27	1.49	4.88	13.73	1.32	1.17	3.82	6.33	13.79	1.20	2.70	2.33	5.69	1.02	5.25	4.24	0.030903	0.557523
N	alternative_acceptor	BAX,PTOV1	chr19	+	chr19:50363594-50363889;chr19:50363594-50363870	chr19:50363594-50363822		chr19:50363823-50363870;chr19:50363871-50363889	chr19:50363870-50363871;chr19:50363889-50363890		9.68	9.04	13.79	14.29	10.98	10.85	16.67	NA	NA	10.00	20.00	NA	15.79	NA	16.67	18.18	18.18	NA	8.19	13.64	6.06	21.43	16.22	NA	9.42	7.69	14.29	25.00	14.29	16.67	9.09	12.90	10.24	21.05	19.23	19.05	9.83	9.38	-0.45	0.459663	0.762514
K	intron_retention	MLF2	chr12	-	chr12:6857714-6857935				chr12:6857713-6857714;chr12:6857935-6857936		5.61	4.12	5.04	1.96	3.48	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	2.08	0.00	0.00	0.00	2.99	4.23	7.02	6.02	2.99	5.71	0.00	8.06	10.89	0.00	3.41	2.94	8.06	9.52	5.26	5.75	4.65	4.24	1.50	4.92	3.42	0.586043	1.000000
K	alternative_donor	ANKRD11,YPEL3	chr16	-	chr16:30106219-30106423	chr16:30106219-30106318		chr16:30106319-30106423	chr16:30106423-30106424		5.36	3.30	6.31	NA	0.00	NA	0.00	0.00	1.35	NA	0.00	NA	0.00	NA	2.50	NA	0.00	NA	3.17	5.88	3.37	NA	0.00	NA	5.13	0.00	4.85	NA	0.00	NA	8.70	5.49	5.13	NA	NA	NA	3.23	5.36	2.13	0.563309	0.794043
K	intron_retention	FUS	chr16	+	chr16:31196501-31198122				chr16:31196500-31196501;chr16:31198122-31198123		18.75	41.86	40.48	2.50	1.46	0.00	3.15	1.45	1.37	0.75	2.16	0.00	2.50	3.09	8.64	1.85	0.75	0.42	6.06	14.95	3.17	6.37	6.93	8.04	31.25	15.32	22.45	1.98	1.79	2.56	17.78	37.80	8.00	19.70	22.15	17.27	7.03	15.13	8.11	0.336796	1.000000
K	intron_retention	B2M	chr15	+	chr15:45007657-45007710				chr15:45007656-45007657;chr15:45007710-45007711		96.41	95.01	96.19	94.85	94.87	95.18	93.01	93.10	92.76	95.01	94.56	94.47	93.06	94.54	94.00	94.11	95.48	95.21	96.81	96.68	95.79	91.83	93.33	93.16	97.37	95.67	96.07	89.76	92.17	92.54	96.44	96.28	96.50	93.64	92.82	94.02	95.75	96.04	0.28	0.973166	1.000000
N	alternative_donor	DAZAP1	chr19	+	chr19:1422396-1425876	chr19:1423455-1425876		chr19:1422396-1423454	chr19:1422395-1422396		5.56	7.41	8.33	5.26	0.00	NA	2.27	1.89	2.86	1.90	2.13	1.45	3.15	3.08	7.32	4.50	1.68	1.01	NA	0.00	2.70	5.13	3.08	7.50	7.14	6.45	5.17	1.69	2.63	4.17	6.25	3.33	0.00	8.93	10.42	7.02	3.15	4.32	1.17	0.947339	0.984606
K	alternative_acceptor	SBF1	chr22	-	chr22:50906120-50906214	chr22:50906123-50906214		chr22:50906120-50906122	chr22:50906119-50906120		12.50	8.33	3.85	NA	NA	NA	9.38	18.18	4.76	13.04	7.14	8.33	13.33	12.00	14.29	13.51	11.43	8.33	NA	10.00	NA	NA	NA	NA	0.00	18.18	10.00	NA	NA	NA	NA	7.14	NA	18.18	20.00	10.53	8.86	12.50	3.64	0.106444	0.598353
N	alternative_donor	ELOVL1	chr1	-	chr1:43830132-43830228;chr1:43830132-43830212;chr1:43830132-43830285	chr1:43830132-43830289		chr1:43830213-43830228;chr1:43830229-43830285;chr1:43830286-43830289	chr1:43830228-43830229;chr1:43830285-43830286;chr1:43830289-43830290		0.00	0.00	0.00	NA	3.70	NA	17.02	0.00	11.43	0.00	17.65	NA	13.33	9.38	0.00	15.56	26.32	NA	NA	0.00	0.00	4.76	12.07	0.00	NA	0.00	0.00	9.52	0.00	0.00	0.00	13.95	38.46	5.71	0.00	0.00	15.18	0.00	-15.18	0.143286	0.560049
K	intron_retention	RPS6	chr9	-	chr9:19376387-19376491				chr9:19376386-19376387;chr9:19376491-19376492		2.26	0.26	1.08	0.28	0.08	0.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	3.11	1.23	0.29	0.19	0.39	0.09	0.00	0.37	0.15	0.07	0.10	7.74	2.32	1.37	0.51	0.33	0.35	0.17	1.13	0.95	0.391497	1.000000
K	intron_retention	GUSB	chr7	-	chr7:65439692-65439905				chr7:65439691-65439692;chr7:65439905-65439906		21.05	11.76	8.70	7.69	28.00	NA	1.33	0.00	0.00	0.00	1.67	0.00	3.57	0.00	0.00	2.17	2.94	0.00	7.69	NA	4.08	4.35	8.89	0.00	15.79	7.41	7.69	2.63	10.00	0.00	6.25	3.85	15.79	14.81	9.52	0.00	9.72	6.25	-3.47	0.630162	1.000000
N	alternative_acceptor	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2420049;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2419918		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		27.27	12.20	8.57	7.49	9.94	11.54	7.41	NA	5.88	11.25	7.41	0.00	7.41	20.00	7.14	7.97	0.00	13.04	9.60	10.00	7.29	9.90	11.11	8.77	17.59	NA	0.00	6.25	5.10	6.74	24.14	11.76	11.48	9.59	8.86	12.50	10.54	22.07	11.53	0.081116	0.585944
N	coord_cassette	STAC3	chr12	-	chr12:57638009-57638698	chr12:57638009-57638097;chr12:57638150-57638319;chr12:57638406-57638698		chr12:57638098-57638149;chr12:57638320-57638405			96.77	96.25	100.00	100.00	90.57	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.53	94.23	98.80	92.86	100.00	100.00	100.00	98.17	100.00	100.00	100.00	100.00	86.96	86.21	90.28	100.00	100.00	100.00	98.12	97.47	-0.66	0.996822	0.997566
N	alternative_acceptor	JTB	chr1	-	chr1:153949866-153950019;chr1:153949748-153950019	chr1:153949883-153950019		chr1:153949748-153949865;chr1:153949866-153949882	chr1:153949747-153949748;chr1:153949865-153949866		46.15	33.33	42.94	44.68	43.80	NA	46.09	47.37	48.04	41.03	33.75	36.36	42.97	NA	43.48	41.86	32.05	37.50	33.73	41.33	36.69	47.37	44.35	NA	31.58	43.40	43.66	47.62	39.80	46.94	39.39	40.77	32.26	40.82	45.59	45.71	33.53	43.40	9.87	0.048264	0.570243
K	intron_retention		chr2	+	chr2:113343692-113343776				chr2:113343691-113343692;chr2:113343776-113343777		12.50	3.70	7.14	9.09	4.11	7.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	8.22	0.00	5.45	0.00	0.00	NA	4.65	0.00	8.00	0.00	1.92	4.00	15.38	13.04	3.03	0.00	6.67	5.26	3.37	0.00	-3.37	0.991181	1.000000
N	alternative_acceptor		chr9	.	chr9:34613891-34614038;chr9:34613899-34614038	chr9:34613869-34614038		chr9:34613869-34613890;chr9:34613891-34613898	chr9:34613868-34613869;chr9:34613890-34613891		96.10	99.38	96.20	100.00	99.35	97.25	100.00	100.00	100.00	100.00	100.00	100.00	99.03	100.00	100.00	98.55	100.00	100.00	98.53	95.00	98.26	100.00	99.05	98.11	100.00	95.52	98.41	96.08	100.00	97.26	96.49	97.30	99.33	100.00	100.00	96.25	99.35	96.29	-3.06	0.061654	0.579641
N	alternative_acceptor	CFB,XXbac-BPG116M5.17	chr6	+	chr6:31919382-31924487;chr6:31919382-31919651;chr6:31919382-31919551	chr6:31919382-31919565		chr6:31919552-31919565;chr6:31919566-31919651;chr6:31919652-31924487	chr6:31919565-31919566;chr6:31919651-31919652;chr6:31924487-31924488		0.00	0.00	0.00	0.00	0.00	0.72	NA	0.00	0.00	NA	NA	NA	25.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.23	0.00	0.00	0.00	0.373901	0.709013
N	cassette	FLCN	chr17	-	chr17:17124943-17127235	chr17:17124943-17125814;chr17:17125976-17127235		chr17:17125815-17125975			100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.590129	0.844113
N	jcn_only_AD	FMNL1	chr17	+	chr17:43309848-43310590;chr17:43309806-43310590	chr17:43309818-43310590		chr17:43309806-43309817;chr17:43309818-43309847	chr17:43309805-43309806;chr17:43309817-43309818		25.53	11.11	29.25	NA	13.64	NA	29.09	28.75	37.99	24.72	22.22	25.53	27.56	24.46	38.91	36.84	25.62	26.53	NA	27.78	29.17	39.39	33.94	33.33	18.33	25.97	28.24	39.22	33.77	50.00	30.61	35.85	33.33	34.29	29.94	34.67	27.56	26.88	-0.68	0.465103	0.716512
N	alternative_acceptor	FERMT3	chr11	+	chr11:63979220-63986722;chr11:63979220-63986701;chr11:63979220-63979399	chr11:63979220-63986726		chr11:63979400-63986701;chr11:63986702-63986722;chr11:63986723-63986726	chr11:63986701-63986702;chr11:63986722-63986723;chr11:63986726-63986727		1.89	0.00	3.57	2.04	5.62	NA	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.86	0.00	0.33	0.65	0.00	0.00	2.46	2.82	2.42	4.15	1.33	0.00	3.85	2.19	0.00	0.55	0.00	4.94	3.23	3.64	1.84	2.56	2.48	0.00	2.17	2.17	0.105327	0.598353
K	intron_retention	CHKB	chr22	-	chr22:51019090-51019848				chr22:51019089-51019090;chr22:51019848-51019849		10.42	0.00	14.71	4.55	5.77	0.00	3.12	3.70	5.41	4.35	3.85	0.00	7.32	7.14	7.50	8.33	0.00	5.00	2.44	14.04	7.81	16.13	12.50	5.71	5.00	10.84	10.64	11.63	13.04	14.63	8.00	11.25	6.82	11.43	8.86	10.11	4.06	9.21	5.15	0.555651	1.000000
K	intron_retention		chr19	+	chr19:50188099-50188178				chr19:50188098-50188099;chr19:50188178-50188179		8.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.00	0.00	2.63	5.00	2.50	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.71	3.70	8.82	0.00	2.17	2.50	0.00	5.00	5.00	0.855808	1.000000
K	cassette	CALML4	chr15	-	chr15:68489967-68497458;chr15:68489967-68497582	chr15:68489967-68491878;chr15:68492020-68497458,chr15:68492020-68497582		chr15:68491879-68492019			31.25	41.94	50.00	NA	50.00	NA	93.94	93.33	NA	100.00	86.96	91.67	91.67	93.75	NA	100.00	88.46	NA	55.56	68.75	84.62	NA	84.21	NA	56.25	41.67	NA	NA	68.42	NA	NA	NA	50.00	70.00	85.71	75.00	55.91	68.75	12.84	0.958090	0.988542
N	alternative_acceptor	PRPF38A	chr1	+	chr1:52880320-52880433;chr1:52880320-52880412	chr1:52880320-52880403		chr1:52880404-52880412;chr1:52880413-52880433	chr1:52880412-52880413;chr1:52880433-52880434		0.00	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	6.25	6.67	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	PARP6	chr15	-	chr15:72542434-72543547	chr15:72542434-72543185;chr15:72543299-72543547		chr15:72543186-72543298			39.39	24.24	39.66	34.78	22.86	36.36	NA	66.67	69.23	69.23	75.00	100.00	80.00	71.43	76.92	75.00	73.33	NA	23.08	51.72	56.00	31.82	30.23	41.67	NA	60.00	33.33	50.00	34.48	47.62	42.86	37.93	27.27	32.50	28.12	48.84	25.75	55.86	30.11	0.323523	0.709176
N	jcn_only_AA	MAZ	chr16	+	chr16:29819615-29819890	chr16:29819615-29819751		chr16:29819752-29819890	chr16:29819890-29819891		0.00	0.00	0.00	0.00	3.08	NA	0.00	0.00	0.00	2.13	0.00	0.00	0.55	0.00	0.00	0.00	0.84	4.00	0.00	0.00	7.14	0.00	0.00	NA	0.00	0.00	2.70	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	SELPLG	chr12	-	chr12:109017664-109017693				chr12:109017663-109017664;chr12:109017693-109017694		59.09	24.56	63.83	NA	33.33	NA	66.44	80.00	63.56	74.58	76.02	75.00	73.63	82.76	75.12	57.89	70.68	60.00	75.00	80.39	25.00	71.43	75.00	70.00	67.86	80.77	82.35	73.33	75.64	NA	78.57	78.31	50.00	80.00	75.51	66.67	67.15	80.19	13.04	0.349492	1.000000
N	cassette	UTP11L	chr1	+	chr1:38484825-38488370	chr1:38484825-38484924;chr1:38485056-38488370		chr1:38484925-38485055			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	95.24	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	80.00	100.00	88.64	100.00	100.00	100.00	100.00	95.00	-5.00	0.337989	0.709176
K	cassette	NUBP1	chr16	+	chr16:10855717-10862903	chr16:10855717-10861805;chr16:10861890-10862903		chr16:10861806-10861889			85.19	96.92	90.00	87.50	93.55	83.33	93.88	96.15	100.00	97.44	96.97	95.45	97.83	100.00	92.59	92.68	95.95	90.00	89.83	96.77	97.67	93.55	89.36	92.59	100.00	95.65	87.10	90.91	97.53	93.94	90.91	94.59	87.04	93.33	94.34	90.48	95.40	95.90	0.50	0.963642	0.990507
N	cassette	MGRN1	chr16	+	chr16:4732948-4733843	chr16:4732948-4733224;chr16:4733271-4733843		chr16:4733225-4733270			88.89	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	COG4	chr16	-	chr16:70515391-70515666				chr16:70515390-70515391;chr16:70515666-70515667		3.85	8.33	12.77	20.00	7.32	NA	0.00	NA	0.00	NA	0.00	NA	5.26	0.00	7.69	NA	0.00	NA	4.17	4.35	4.00	NA	7.50	0.00	2.22	6.06	9.43	10.00	5.26	8.33	3.45	6.25	7.35	0.00	12.82	11.54	4.71	3.85	-0.86	0.901408	1.000000
K	alternative_donor	PRPSAP1	chr17	-	chr17:74309098-74309901	chr17:74309098-74309279		chr17:74309280-74309901	chr17:74309901-74309902		15.00	12.50	15.87	9.09	5.88	NA	0.00	4.35	0.00	0.00	0.00	NA	3.12	0.00	5.56	0.00	3.70	NA	7.14	10.53	6.06	5.88	8.00	NA	NA	13.04	12.96	NA	13.04	NA	6.67	13.21	5.26	9.52	13.04	9.52	5.26	8.60	3.34	0.414964	0.676806
N	jcn_only_AA	CMTM3	chr16	+	chr16:66643907-66646511	chr16:66643907-66644850		chr16:66644851-66646511	chr16:66646511-66646512		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	TDP2	chr6	-	chr6:24651320-24653210;chr6:24651298-24653210;chr6:24651318-24653210	chr6:24651143-24653210		chr6:24651143-24651297;chr6:24651298-24651317;chr6:24651318-24651319	chr6:24651142-24651143;chr6:24651297-24651298;chr6:24651317-24651318		0.00	0.00	1.35	0.00	0.00	5.88	0.00	0.00	0.00	0.59	0.48	0.00	0.00	0.79	0.00	0.97	1.18	2.60	0.00	0.85	0.00	1.16	0.38	0.62	0.00	0.00	0.81	1.74	0.42	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.175045	0.663989
K	alternative_first_exon	BCAP31	chrX	-	chrX:152988744-152989409,chrX:152988744-152989470,chrX:152988744-152989655;chrX:152988744-152989788	chrX:152988744-152988962	chrX:152989789-152990152	chrX:152988963-152989549			22.86	15.46	19.30	13.51	16.25	15.79	31.25	33.71	23.21	28.30	27.13	22.86	20.20	32.69	21.28	22.22	18.95	15.49	11.36	20.00	25.71	19.23	17.42	13.00	18.18	29.33	19.23	21.59	20.18	14.29	25.27	23.53	18.64	24.07	17.82	17.11	18.41	27.30	8.89	0.045087	0.158396
K	jcn_only_AA	C16orf62,HERPUD1	chr16	+	chr16:56969225-56969315	chr16:56969225-56969312		chr16:56969313-56969315	chr16:56969315-56969316		88.57	96.30	81.36	NA	87.50	NA	91.95	87.50	90.24	94.87	91.84	95.05	94.00	88.57	92.50	95.83	91.53	92.73	NA	100.00	90.91	82.86	83.33	85.23	NA	88.89	86.49	85.71	85.29	88.37	72.00	87.34	70.00	88.52	84.85	87.64	92.97	88.57	-4.41	0.949261	0.982785
N	jcn_only_AD	CAST	chr5	+	chr5:96093000-96093147;chr5:96093041-96093147	chr5:96090446-96093147		chr5:96090446-96092999;chr5:96093000-96093040	chr5:96090445-96090446;chr5:96092999-96093000		96.10	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.97	100.00	100.00	100.00	100.00	92.54	90.57	100.00	98.06	100.00	96.86	100.00	99.48	-0.52	0.157491	0.657607
K	jcn_only_AA	NSUN5	chr7	-	chr7:72721641-72722427	chr7:72721755-72722427		chr7:72721641-72721754	chr7:72721640-72721641		100.00	100.00	95.45	NA	100.00	NA	94.44	100.00	93.10	NA	95.00	NA	94.29	100.00	96.55	92.31	95.65	NA	85.71	94.44	92.31	NA	92.86	NA	NA	100.00	94.12	NA	93.33	NA	94.44	89.47	NA	NA	NA	90.91	94.37	100.00	5.63	0.226741	0.663989
N	jcn_only_AD	CPT2	chr1	+	chr1:53678489-53678935;chr1:53676923-53678935	chr1:53676992-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		87.50	100.00	94.12	100.00	100.00	100.00	95.74	100.00	86.96	86.67	91.94	100.00	100.00	100.00	100.00	100.00	92.00	100.00	95.24	89.74	95.65	85.71	94.87	100.00	100.00	95.35	91.67	90.91	88.57	86.36	100.00	92.31	95.65	100.00	94.00	91.84	97.87	97.67	-0.20	0.381606	0.657607
N	jcn_only_AA	TGFBI	chr5	+	chr5:135390551-135391368	chr5:135390551-135390957		chr5:135390958-135391368	chr5:135391368-135391369		1.21	7.64	0.51	26.14	4.11	70.00	0.74	0.89	1.01	0.78	0.39	1.08	0.28	0.00	1.40	1.23	0.25	0.61	16.34	1.03	2.82	1.99	0.88	1.72	12.88	0.96	0.40	0.90	0.64	4.31	2.63	0.85	21.85	1.45	1.10	1.36	10.26	0.99	-9.27	0.054379	0.663989
K	alternative_acceptor	IDH3B	chr20	-	chr20:2639169-2640170	chr20:2639484-2640170		chr20:2639169-2639483	chr20:2639168-2639169		96.77	96.92	100.00	98.55	98.59	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.81	95.83	98.11	97.06	97.03	100.00	100.00	100.00	100.00	97.73	98.17	100.00	96.88	92.59	93.41	96.08	100.00	100.00	98.46	98.44	-0.02	0.779018	0.917646
N	alternative_first_exon	EPN1	chr19	+	chr19:56187421-56189892,chr19:56188948-56189892;chr19:56186802-56189892	chr19:56188585-56189892	chr19:56186592-56186801	chr19:56187991-56188584			2.78	8.82	2.70	NA	NA	NA	2.33	3.57	7.41	4.55	6.00	0.00	5.00	0.00	4.35	10.53	7.27	7.69	NA	13.33	0.00	NA	3.12	NA	0.00	5.00	3.33	NA	8.00	NA	12.50	5.26	NA	6.67	10.00	0.00	3.67	4.29	0.62	0.481578	0.624181
N	alternative_acceptor	VPS28	chr8	-	chr8:145650424-145651065;chr8:145650435-145651065	chr8:145650384-145651065		chr8:145650384-145650423;chr8:145650424-145650434	chr8:145650383-145650384;chr8:145650423-145650424		28.85	36.89	28.99	25.81	26.51	28.57	20.45	16.67	24.49	20.93	19.70	18.18	31.34	18.18	11.76	23.91	22.22	10.53	35.37	34.38	22.54	19.05	29.69	20.00	32.26	23.40	17.57	17.78	28.26	25.40	35.48	32.14	35.71	26.47	24.49	23.91	33.81	26.12	-7.69	0.187484	0.660713
N	jcn_only_AD	PPP6R1	chr19	-	chr19:55758478-55769802;chr19:55758478-55767042	chr19:55758478-55763461		chr19:55763462-55767042;chr19:55767043-55769802	chr19:55767042-55767043;chr19:55769802-55769803		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	6.25	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	RAB34	chr17	-	chr17:27043077-27043920				chr17:27043076-27043077;chr17:27043920-27043921		4.17	0.00	9.35	NA	3.23	NA	0.00	0.00	2.86	0.00	0.00	NA	0.00	0.00	1.82	0.00	0.00	0.00	NA	3.70	3.70	NA	4.00	NA	0.00	2.63	5.65	0.00	3.57	0.00	7.41	6.41	9.09	0.00	10.53	8.33	0.00	3.17	3.17	0.687839	1.000000
N	alternative_acceptor	PLXNB2	chr22	-	chr22:50719296-50719517;chr22:50719414-50719517	chr22:50719403-50719517		chr22:50719296-50719402;chr22:50719403-50719413	chr22:50719295-50719296;chr22:50719402-50719403		97.22	97.35	98.38	NA	100.00	NA	100.00	100.00	100.00	96.49	97.71	100.00	98.32	98.61	98.08	100.00	100.00	96.43	92.86	95.41	100.00	100.00	98.43	100.00	100.00	100.00	98.10	100.00	98.92	100.00	95.65	96.33	100.00	97.85	98.57	96.05	99.16	97.91	-1.25	0.850833	0.946659
N	jcn_only_AD	FAM65A	chr16	+	chr16:67572972-67573630	chr16:67572986-67573630		chr16:67572972-67572985	chr16:67572971-67572972		0.00	0.00	7.69	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	NA	NA	0.00	0.00	0.00	4.55	0.00	NA	0.00	NA	NA	4.35	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.178439	0.657607
N	alternative_acceptor	TNK2	chr3	-	chr3:195594152-195594231;chr3:195594130-195594231	chr3:195594136-195594231		chr3:195594130-195594135;chr3:195594136-195594151	chr3:195594129-195594130;chr3:195594135-195594136		87.27	88.89	68.75	NA	76.92	NA	NA	85.00	92.31	NA	NA	NA	NA	84.21	90.91	NA	72.73	NA	73.68	85.71	81.82	NA	73.33	NA	85.71	93.88	100.00	NA	80.00	NA	88.46	72.22	70.59	NA	80.00	63.64	79.69	86.49	6.80	0.183431	0.660713
K	jcn_only_AA	HSPA4,TXNDC15	chr5	+	chr5:134229346-134231995	chr5:134229346-134231983		chr5:134231984-134231995	chr5:134231995-134231996		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_acceptor	DUS1L	chr17	-	chr17:80015968-80016216	chr17:80016131-80016216		chr17:80015968-80016130	chr17:80015967-80015968		84.62	89.23	90.91	92.86	89.90	89.16	94.23	NA	94.74	100.00	91.84	92.00	100.00	NA	93.10	94.74	100.00	95.45	83.69	100.00	91.03	90.32	91.07	90.00	90.21	100.00	100.00	92.31	90.20	87.50	100.00	88.10	85.91	84.00	96.88	93.94	89.72	100.00	10.28	0.267858	0.709013
N	jcn_only_AD	SRRM2	chr16	+	chr16:2820211-2820352;chr16:2819286-2820352	chr16:2820229-2820352		chr16:2819286-2820210;chr16:2820211-2820228	chr16:2819285-2819286;chr16:2820210-2820211		3.70	1.88	1.38	0.00	0.64	0.00	0.00	0.00	4.49	1.45	2.44	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	2.59	0.00	0.00	0.00	0.00	4.76	1.53	0.00	2.70	7.35	1.92	1.69	0.74	0.00	2.68	3.45	0.37	0.96	0.59	0.258991	0.657607
K	jcn_only_AA	MPND,PNPLA6	chr19	+	chr19:7616324-7618760	chr19:7616324-7618757		chr19:7618758-7618760	chr19:7618760-7618761		37.66	44.12	46.43	NA	53.85	NA	42.86	46.58	40.00	52.38	44.12	53.85	40.00	44.44	50.00	31.58	53.57	36.36	NA	41.33	33.33	54.55	48.15	NA	NA	42.86	34.67	56.25	40.62	NA	38.46	31.43	41.67	38.10	33.33	38.89	42.27	42.09	-0.17	0.872945	0.951276
N	coord_cassette	PHB2	chr12	-	chr12:7075664-7079358	chr12:7075664-7077054;chr12:7077185-7077573;chr12:7077751-7078669;chr12:7078741-7079358		chr12:7077055-7077184;chr12:7077574-7077750;chr12:7078670-7078740			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.67	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.978106	0.987304
K	alternative_donor	IK	chr5	+	chr5:140027510-140028055;chr5:140026895-140028055	chr5:140027748-140028055		chr5:140026895-140027509;chr5:140027510-140027747	chr5:140026894-140026895;chr5:140027509-140027510		0.00	3.12	2.38	NA	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	3.12	0.00	-3.12	0.153594	0.563271
N	alternative_acceptor	CD300C	chr17	-	chr17:72537876-72538999;chr17:72536662-72538999	chr17:72534063-72538999		chr17:72534063-72536661;chr17:72536662-72537875	chr17:72534062-72534063;chr17:72536661-72536662		0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	5.00	5.88	NA	0.00	0.00	10.34	0.00	0.00	NA	NA	0.00	22.35	0.00	0.00	NA	7.14	0.00	0.00	0.00	NA	18.75	0.00	0.00	0.00	0.373901	0.709013
N	alternative_acceptor	AP2A2	chr11	+	chr11:1008136-1009099;chr11:1008136-1009163;chr11:1008136-1009027;chr11:1008136-1008830	chr11:1008136-1008805		chr11:1008806-1008830;chr11:1008831-1009027;chr11:1009028-1009099;chr11:1009100-1009163	chr11:1008830-1008831;chr11:1009027-1009028;chr11:1009099-1009100;chr11:1009163-1009164		3.03	4.67	9.52	0.00	2.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.96	3.57	4.17	0.00	1.85	0.00	2.30	0.00	3.57	0.00	1.02	0.00	0.00	8.33	1.01	2.70	4.62	3.85	1.48	0.00	-1.48	0.590972	0.844088
K	alternative_first_exon	EIF5A	chr17	+	chr17:7212435-7212933,chr17:7211453-7212933,chr17:7212824-7212933,chr17:7210433-7212933,chr17:7210670-7212933,chr17:7212312-7212933;chr17:7211072-7212933;chr17:7210435-7212933;chr17:7211895-7212933	chr17:7211433-7212933	chr17:7210692-7211071;chr17:7210318-7210434;chr17:7211690-7211894	chr17:7211293-7211432			5.66	13.11	6.02	12.82	12.00	15.38	12.63	12.22	16.23	19.91	18.79	17.76	15.32	8.60	12.43	13.11	27.94	27.50	11.11	10.00	16.07	21.15	9.09	18.81	NA	3.92	8.62	17.02	7.89	17.60	5.08	9.33	14.71	17.20	13.40	17.14	13.11	7.13	-5.98	0.005304	0.037949
K	intron_retention		chr2	+	chr2:202000831-202005079				chr2:202000830-202000831;chr2:202005079-202005080		0.51	10.34	3.38	0.97	0.00	0.90	0.00	0.62	0.48	0.00	0.00	0.45	0.00	0.23	0.65	0.00	0.00	0.30	0.00	1.18	0.95	1.63	0.00	1.65	NA	1.87	1.06	3.16	0.00	1.39	2.48	3.39	4.35	1.90	1.05	2.12	0.00	0.90	0.90	0.940370	1.000000
N	alternative_acceptor	HNRNPLL	chr2	-	chr2:38791380-38795340	chr2:38792136-38795340		chr2:38791380-38792135	chr2:38791379-38791380		8.89	8.70	10.53	NA	2.17	4.17	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	7.14	5.13	8.33	8.51	6.67	8.33	12.96	11.43	7.14	3.23	4.35	6.25	8.57	5.26	6.90	9.09	5.88	6.08	6.70	0.62	0.710529	0.890280
K	intron_retention		chr17	+	chr17:80014643-80014715				chr17:80014642-80014643;chr17:80014715-80014716		4.17	5.88	0.00	4.00	4.41	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	0.00	1.49	7.14	3.64	0.00	6.25	8.33	0.00	0.00	5.88	0.00	18.18	10.26	5.93	0.00	0.00	2.50	5.82	2.08	-3.74	0.998072	1.000000
N	cassette	CARD19	chr9	+	chr9:95870110-95874160;chr9:95870110-95874499;chr9:95870099-95874160;chr9:95870099-95874499	chr9:95870110-95872849,chr9:95870099-95872849;chr9:95873004-95874499,chr9:95873004-95874160		chr9:95872850-95873003			97.20	100.00	100.00	94.74	94.62	96.30	100.00	98.48	100.00	98.61	96.45	100.00	100.00	98.88	100.00	97.69	97.44	98.68	100.00	100.00	100.00	96.08	96.89	100.00	100.00	100.00	100.00	98.25	95.71	100.00	98.00	99.12	95.96	97.59	95.65	98.72	100.00	98.68	-1.32	0.503353	0.786576
N	jcn_only_AA	SYMPK	chr19	-	chr19:46319832-46320055;chr19:46319873-46320055	chr19:46319836-46320055		chr19:46319832-46319835;chr19:46319836-46319872	chr19:46319831-46319832;chr19:46319835-46319836		100.00	97.75	95.56	94.44	93.65	95.31	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	100.00	100.00	98.41	100.00	95.88	100.00	97.30	100.00	100.00	95.00	98.08	100.00	100.00	100.00	100.00	97.56	95.38	94.12	100.00	100.00	98.08	100.00	1.92	0.341980	0.663989
N	alternative_donor	HELQ,HNRNPDL	chr4	-	chr4:83346821-83347189	chr4:83346821-83346905		chr4:83346906-83347189	chr4:83347189-83347190		25.00	10.20	49.09	6.25	18.18	2.63	28.57	16.67	9.09	10.71	30.00	NA	40.00	20.00	40.74	19.23	35.29	NA	4.44	21.05	4.55	33.78	37.29	37.93	4.65	28.12	44.44	27.91	30.19	15.91	9.84	22.73	3.23	34.72	45.28	27.45	7.42	20.52	13.10	0.494135	0.747948
K	mutually_exclusive	NMRAL1	chr16	-	chr16:4516404-4519504,chr16:4519700-4524093	chr16:4516404-4519227,chr16:4519467-4524093	chr16:4519505-4519699	chr16:4519228-4519466			100.00	100.00	100.00	NA	94.44	NA	100.00	100.00	100.00	100.00	100.00	NA	97.06	NA	100.00	92.31	96.15	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.510003
K	jcn_only_AA	MIEF1,NCAPH2	chr22	+	chr22:50960845-50960929	chr22:50960845-50960926		chr22:50960927-50960929	chr22:50960929-50960930		14.29	4.94	10.53	6.67	5.36	5.56	0.00	NA	NA	12.50	10.53	NA	3.57	NA	7.69	12.50	15.79	NA	7.61	11.11	5.26	4.17	9.62	0.00	6.10	0.00	3.33	15.00	15.38	12.00	6.82	5.08	5.88	0.00	9.68	16.67	5.41	8.96	3.55	0.365021	0.663989
N	jcn_only_AA	SRSF11	chr1	+	chr1:70716187-70716293;chr1:70716187-70716262	chr1:70716187-70716290		chr1:70716263-70716290;chr1:70716291-70716293	chr1:70716290-70716291;chr1:70716293-70716294		53.06	52.38	47.13	68.18	68.18	71.43	64.71	69.84	58.43	70.08	63.86	63.95	52.56	60.00	62.39	68.00	66.95	71.91	30.00	55.13	51.85	56.98	53.33	58.14	47.06	68.89	60.49	68.85	62.30	68.52	52.94	55.45	71.43	58.02	56.32	56.11	52.47	57.56	5.09	0.329818	0.663989
N	alternative_acceptor	RELT	chr11	+	chr11:73104963-73105280	chr11:73104963-73105270		chr11:73105271-73105280	chr11:73105280-73105281		0.00	8.70	2.20	NA	0.00	NA	0.00	2.17	0.00	0.00	0.00	0.00	0.00	1.52	0.00	1.56	0.00	0.00	NA	2.27	0.00	0.00	3.33	NA	0.00	0.00	2.04	0.00	9.52	NA	0.00	3.70	NA	0.00	0.00	0.00	0.00	0.76	0.76	0.628986	0.857287
N	coord_cassette	PPP1R12C	chr19	-	chr19:55614937-55628590	chr19:55614937-55623834;chr19:55623954-55624032;chr19:55624164-55628590		chr19:55623835-55623953;chr19:55624033-55624163			95.24	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	84.62	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	96.43	100.00	NA	96.77	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.43	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.180090	0.643829
N	alternative_acceptor	PDXK	chr21	+	chr21:45163689-45165959;chr21:45163689-45164351	chr21:45163689-45163819		chr21:45163820-45164351;chr21:45164352-45165959	chr21:45164351-45164352;chr21:45165959-45165960		3.10	3.40	6.38	0.74	0.89	0.00	0.49	0.49	0.99	0.41	0.56	0.00	0.56	0.49	1.39	0.33	0.28	0.00	0.78	1.68	0.54	1.59	2.91	2.35	4.96	4.00	2.44	1.20	0.87	0.92	3.77	3.85	1.29	2.65	3.06	2.82	1.04	2.39	1.35	0.738310	0.902878
N	alternative_donor	ABR	chr17	-	chr17:916405-953289	chr17:916405-936336		chr17:936337-953289	chr17:953289-953290		1.05	2.86	0.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.38	0.00	NA	0.00	NA	0.00	0.89	0.00	15.38	0.00	0.00	0.00	1.37	0.00	0.00	0.00	NA	0.76	0.83	0.38	1.43	0.00	-1.43	0.318016	0.650093
K	intron_retention	SYNGR2	chr17	+	chr17:76167136-76167819				chr17:76167135-76167136;chr17:76167819-76167820		10.00	15.15	11.67	NA	6.25	NA	0.00	2.63	3.23	0.00	2.17	0.00	0.00	4.17	5.33	3.03	2.00	0.00	14.29	14.71	12.00	8.33	7.58	7.69	NA	6.45	9.72	0.00	8.82	7.69	16.67	12.50	16.00	8.00	6.35	5.13	14.29	8.22	-6.06	0.943894	1.000000
K	intron_retention	MAN2C1	chr15	-	chr15:75650960-75651044				chr15:75650959-75650960;chr15:75651044-75651045		5.26	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	18.18	15.00	0.00	21.05	32.61	29.17	5.71	0.00	0.00	0.00	0.00	5.00	11.11	18.92	18.75	25.00	28.57	25.53	3.54	5.26	1.72	0.998900	1.000000
K	intron_retention	SREBF1	chr17	-	chr17:17717725-17717928				chr17:17717724-17717725;chr17:17717928-17717929		4.00	6.90	2.94	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	5.71	0.00	3.57	NA	0.00	6.25	1.79	0.00	6.67	0.00	0.00	5.13	3.70	0.00	0.00	9.09	0.00	2.00	2.00	0.276239	1.000000
K	cassette	IMPDH1	chr7	-	chr7:128040594-128041068	chr7:128040594-128040870;chr7:128040946-128041068		chr7:128040871-128040945			86.84	86.21	78.08	NA	82.35	NA	100.00	93.02	94.92	100.00	100.00	100.00	97.80	92.86	92.00	92.50	98.55	100.00	76.92	86.67	86.36	80.00	83.72	72.22	100.00	90.91	75.95	88.89	91.18	84.62	72.73	79.17	NA	81.48	80.49	86.67	97.80	88.88	-8.92	0.394953	0.711380
K	cassette	FLAD1	chr1	+	chr1:154962734-154965188;chr1:154962734-154965040	chr1:154962734-154962814;chr1:154963005-154965040,chr1:154963005-154965188		chr1:154962815-154963004			100.00	100.00	100.00	100.00	93.10	91.30	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.77	NA	100.00	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	97.50	NA	100.00	100.00	100.00	100.00	0.00	0.515691	0.793859
K	intron_retention	AP5Z1	chr7	+	chr7:4828583-4829462				chr7:4828582-4828583;chr7:4829462-4829463		5.26	0.00	4.55	3.33	0.00	0.00	0.00	0.00	0.00	0.00	5.26	5.88	0.00	0.00	2.78	1.85	0.00	NA	0.00	4.17	0.00	6.45	3.39	6.25	0.00	4.26	2.56	0.00	0.00	0.00	4.62	5.08	0.00	8.89	6.25	12.28	0.00	4.21	4.21	0.056951	1.000000
N	cassette	LGMN	chr14	-	chr14:93170707-93172827;chr14:93170707-93176016	chr14:93170707-93170984;chr14:93171053-93176016,chr14:93171053-93172827		chr14:93170985-93171052			96.71	97.52	96.70	97.04	98.12	97.88	98.61	98.03	99.15	98.70	98.50	98.65	97.02	95.80	93.92	96.34	96.19	95.83	95.28	93.43	96.67	94.24	95.76	94.86	97.64	96.78	96.20	98.24	98.56	98.46	96.86	96.24	96.39	97.35	97.54	97.14	97.27	96.75	-0.52	0.332801	0.709176
N	jcn_only_AA	SCYL1	chr11	+	chr11:65303806-65304056;chr11:65303806-65304154;chr11:65303806-65304188	chr11:65303806-65304061		chr11:65304057-65304061;chr11:65304062-65304154;chr11:65304155-65304188	chr11:65304061-65304062;chr11:65304154-65304155;chr11:65304188-65304189		0.00	0.00	0.00	3.45	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	4.88	0.00	0.00	0.00	4.17	0.00	0.00	5.00	3.03	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.176018	0.663989
K	cassette	CANX	chr5	+	chr5:179126104-179132679	chr5:179126104-179126575;chr5:179126772-179132679		chr5:179126576-179126771			0.00	0.00	0.00	NA	NA	NA	0.56	0.00	0.49	0.00	0.64	0.78	0.46	0.71	0.89	0.55	0.54	1.03	NA	1.89	NA	1.32	1.96	1.67	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.12	2.02	1.29	0.51	0.00	-0.51	0.409177	0.724677
N	alternative_first_exon	MDP1,NEDD8-MDP1	chr14	-	chr14:24685004-24685093;chr14:24685004-24687338;chr14:24685004-24686391	chr14:24685004-24685124	chr14:24687339-24687421;chr14:24686392-24686429	chr14:24685125-24685273			100.00	91.67	100.00	NA	92.31	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	94.74	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	93.75	NA	92.31	NA	100.00	100.00	0.00	0.183551	0.392065
N	alternative_last_exon	CIRBP	chr19	+	chr19:1272051-1273487,chr19:1272051-1273649,chr19:1272051-1274312;chr19:1272051-1277181;chr19:1272051-1273599,chr19:1272051-1273492	chr19:1272051-1272425	chr19:1277182-1277298;chr19:1273600-1273714	chr19:1272426-1273171			97.09	96.22	96.40	97.01	97.45	98.03	99.39	99.50	96.51	100.00	99.30	100.00	99.44	98.56	97.29	99.60	99.38	98.02	94.54	96.97	94.97	97.30	96.36	96.02	98.32	95.88	93.36	95.21	96.28	95.12	96.77	94.88	95.39	97.62	95.63	95.75	97.27	97.03	-0.24	0.815623	0.892387
N	alternative_acceptor	NXF1	chr11	-	chr11:62561939-62562406;chr11:62561871-62562406	chr11:62561913-62562406		chr11:62561871-62561912;chr11:62561913-62561938	chr11:62561870-62561871;chr11:62561912-62561913		78.45	73.53	82.14	77.97	80.60	89.55	100.00	86.84	88.24	85.71	87.50	80.00	90.00	83.33	90.91	84.62	84.21	83.87	84.38	88.42	85.53	83.33	83.54	85.56	82.00	84.78	82.67	89.58	91.30	85.09	84.80	83.72	83.70	82.11	77.61	78.72	84.04	84.79	0.75	0.772850	0.915715
N	jcn_only_AD	FGD2	chr6	+	chr6:36993715-36995204;chr6:36994102-36995204;chr6:36995111-36995204	chr6:36993985-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.82	NA	3.85	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.41	0.41	0.212404	0.657607
K	intron_retention		chr12	-	chr12:49494238-49494338				chr12:49494237-49494238;chr12:49494338-49494339		10.53	8.33	10.00	NA	4.88	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.72	NA	0.00	NA	11.54	6.25	10.81	NA	8.33	NA	22.58	6.56	8.00	0.00	0.00	0.00	12.50	3.57	7.89	9.09	6.67	4.17	8.11	6.40	-1.71	0.881678	1.000000
N	cassette	H2AFY	chr5	-	chr5:134681748-134688635;chr5:134681748-134686696;chr5:134681748-134696186	chr5:134681748-134686512;chr5:134686604-134686696,chr5:134686604-134696186,chr5:134686604-134688635		chr5:134686513-134686603			42.39	67.22	64.63	48.94	67.05	71.43	44.24	20.22	31.58	28.08	34.87	31.14	52.49	18.75	44.44	33.33	29.35	22.45	65.67	44.64	39.24	59.44	64.10	59.49	84.21	48.08	61.29	46.15	56.47	56.10	42.37	64.21	66.07	63.11	61.54	67.63	65.87	42.38	-23.49	0.005543	0.255099
K	jcn_only_AA	HLA-DRA	chr6	+	chr6:32410471-32411036	chr6:32410471-32410961		chr6:32410962-32411036	chr6:32411036-32411037		95.68	96.34	97.13	95.21	95.60	94.69	97.53	96.98	96.57	97.45	97.79	97.48	96.40	96.75	96.31	95.92	97.02	96.36	97.40	97.18	97.08	96.65	96.32	96.63	98.01	96.13	95.83	96.55	97.06	97.23	100.00	100.00	100.00	95.16	100.00	95.19	97.47	96.87	-0.60	0.564178	0.793185
N	alternative_donor	FBXL15	chr10	+	chr10:104181064-104181543	chr10:104181265-104181543		chr10:104181064-104181264	chr10:104181063-104181064		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	92.86	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	jcn_only_AD	ANKRD11,YPEL3	chr16	-	chr16:30106219-30106423	chr16:30106219-30106318		chr16:30106319-30106423	chr16:30106423-30106424		3.64	0.00	3.70	NA	0.00	NA	0.00	0.00	2.67	NA	0.00	NA	0.00	NA	7.14	NA	0.00	NA	1.61	0.00	2.27	NA	3.12	NA	5.93	0.00	2.00	NA	0.00	NA	0.00	0.00	5.13	NA	NA	NA	0.81	0.00	-0.81	0.328223	0.657607
K	intron_retention	VPS29	chr12	-	chr12:110934009-110939853				chr12:110934008-110934009;chr12:110939853-110939854		14.58	0.00	11.11	5.00	7.69	12.50	2.70	2.82	3.45	2.86	1.75	3.33	2.86	6.33	4.35	5.06	1.85	8.11	7.14	7.69	7.50	9.76	8.20	4.69	0.00	8.33	14.29	7.41	4.35	8.93	7.14	6.38	5.26	11.54	12.50	8.47	2.78	7.42	4.63	0.400884	1.000000
N	alternative_donor	CIRBP	chr19	+	chr19:1271365-1271549;chr19:1271389-1271549	chr19:1271467-1271549		chr19:1271365-1271388;chr19:1271389-1271466	chr19:1271364-1271365;chr19:1271388-1271389		75.00	70.83	77.27	NA	75.00	NA	72.73	75.00	66.67	73.33	62.96	72.73	64.71	82.35	77.78	76.47	74.19	NA	75.00	64.29	48.15	75.00	77.78	52.94	84.62	66.67	62.50	71.43	68.42	72.73	66.67	66.67	55.17	84.62	56.25	83.33	71.78	70.84	-0.94	0.820875	0.942369
N	jcn_only_AA	VAC14	chr16	-	chr16:70721992-70726723;chr16:70721994-70726723;chr16:70721988-70726723;chr16:70725990-70726723	chr16:70725953-70726723		chr16:70721988-70721991;chr16:70721992-70721993;chr16:70721994-70725952;chr16:70725953-70725989	chr16:70721987-70721988;chr16:70721991-70721992;chr16:70721993-70721994;chr16:70725952-70725953		0.00	0.00	0.00	0.00	0.00	1.16	7.06	8.33	2.00	14.42	9.02	12.90	5.19	0.00	0.00	6.49	8.42	8.11	0.00	3.51	0.00	0.00	0.00	0.00	0.00	1.59	1.59	0.00	0.00	2.99	4.26	0.00	0.00	4.44	0.00	9.62	0.00	2.55	2.55	0.633538	0.838192
N	jcn_only_AD		chr19	-	chr19:36232130-36233290;chr19:36232130-36233167	chr19:36232130-36233296		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		100.00	90.62	100.00	91.30	95.65	83.78	93.10	100.00	100.00	100.00	86.79	100.00	94.92	100.00	100.00	100.00	100.00	100.00	92.24	94.12	100.00	100.00	98.29	97.87	89.13	86.67	92.73	100.00	95.96	100.00	100.00	92.73	90.52	90.91	100.00	100.00	91.43	100.00	8.57	0.077151	0.627804
K	jcn_only_AA	PAF1	chr19	-	chr19:39876860-39877121	chr19:39877044-39877121		chr19:39876860-39877043	chr19:39876859-39876860		100.00	100.00	96.97	93.10	95.24	91.36	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.44	93.85	90.98	100.00	95.00	100.00	100.00	96.77	100.00	92.73	95.00	93.41	86.17	89.69	87.36	94.74	100.00	93.44	97.83	98.38	0.56	0.677135	0.855732
N	alternative_donor	PGS1	chr17	+	chr17:76415807-76420141;chr17:76416405-76420141;chr17:76415757-76420141	chr17:76419377-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		28.07	12.50	31.97	8.70	4.55	9.52	15.38	15.62	10.23	17.86	13.33	28.57	25.00	12.20	18.44	26.09	18.18	35.71	6.67	27.78	5.66	42.31	25.00	44.83	NA	26.19	26.50	28.57	16.67	22.73	13.79	18.18	4.76	41.38	42.86	47.96	12.50	20.91	8.41	0.137335	0.549706
N	cassette	TSPAN33	chr7	+	chr7:128806748-128807613	chr7:128806748-128807239;chr7:128807402-128807613		chr7:128807240-128807401			96.30	100.00	100.00	100.00	100.00	90.00	97.01	97.44	98.52	100.00	100.00	97.59	100.00	100.00	98.76	100.00	95.65	96.67	100.00	100.00	98.59	92.16	96.15	97.01	100.00	100.00	100.00	93.94	100.00	97.55	100.00	100.00	NA	100.00	100.00	97.62	100.00	100.00	0.00	0.633553	0.867338
N	alternative_acceptor	BSCL2,HNRNPUL2-BSCL2	chr11	-	chr11:62462166-62469939	chr11:62462184-62469939		chr11:62462166-62462183	chr11:62462165-62462166		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177966	0.660713
N	alternative_donor	PSMB10	chr16	-	chr16:67970007-67970117	chr16:67970007-67970093		chr16:67970094-67970117	chr16:67970117-67970118		2.14	0.81	3.75	3.92	2.17	1.44	0.00	0.42	2.29	2.44	2.53	1.12	0.00	1.11	0.87	0.89	1.14	0.00	1.96	2.31	2.80	5.88	4.11	4.29	4.65	2.19	2.35	4.00	2.06	3.59	5.00	3.95	2.15	4.65	5.17	2.63	1.39	2.17	0.78	0.546462	0.780071
K	intron_retention	SQSTM1	chr5	+	chr5:179251088-179251181				chr5:179251087-179251088;chr5:179251181-179251182		3.39	8.20	4.02	2.32	1.33	3.30	0.00	0.00	0.00	0.00	0.00	0.00	0.16	0.00	0.00	0.00	0.00	0.00	5.42	2.97	3.49	2.14	1.41	2.38	6.51	1.37	0.78	0.31	0.21	0.00	7.77	4.62	13.57	0.97	1.24	1.35	5.96	2.17	-3.79	0.419070	1.000000
K	jcn_only_AA	DBNL,ZNF655	chr7	+	chr7:44097880-44098030	chr7:44097880-44098027		chr7:44098028-44098030	chr7:44098030-44098031		23.88	16.90	34.92	23.81	27.27	28.57	23.40	28.38	29.93	28.08	28.17	31.30	22.31	28.22	27.53	26.54	29.17	26.35	18.75	31.87	26.39	22.22	25.29	38.78	23.08	25.69	22.41	24.36	28.18	30.70	21.31	34.48	22.86	26.92	25.33	23.16	22.59	26.95	4.37	0.019341	0.538650
N	jcn_only_AA		chr11	+	chr11:65403275-65403401;chr11:65403275-65403421	chr11:65403275-65403644		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		78.57	100.00	78.26	NA	NA	NA	100.00	88.24	88.89	100.00	69.23	NA	100.00	100.00	91.67	NA	76.92	NA	75.00	76.47	NA	NA	100.00	NA	NA	78.57	76.19	NA	NA	NA	80.00	78.57	100.00	NA	71.43	73.68	100.00	79.28	-20.72	0.106025	0.663989
N	alternative_acceptor	MAN2B1	chr19	-	chr19:12769322-12772073;chr19:12769325-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769328-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		0.00	0.00	0.89	NA	0.00	NA	1.54	1.16	1.40	0.98	1.14	1.28	1.24	1.67	0.92	1.61	0.88	1.20	7.14	2.22	6.67	5.17	6.61	5.10	4.44	5.88	5.26	5.56	5.45	5.00	5.56	5.00	6.25	2.35	5.71	4.79	2.99	1.95	-1.05	0.667574	0.880186
K	cassette	ATP5C1	chr10	+	chr10:7844818-7849621	chr10:7844818-7848936;chr10:7848974-7849621		chr10:7848937-7848973			95.33	88.34	96.88	96.69	94.38	96.39	97.52	100.00	96.03	98.31	98.81	100.00	98.21	100.00	98.48	97.37	98.87	100.00	89.01	94.74	93.69	96.55	94.71	95.88	87.83	92.77	96.50	97.06	95.98	94.86	87.50	84.55	84.25	92.64	91.40	93.33	88.68	95.03	6.36	0.194873	0.709176
K	intron_retention	CCDC12	chr3	-	chr3:46963630-46963725				chr3:46963629-46963630;chr3:46963725-46963726		0.00	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29	3.33	0.00	2.17	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	5.26	1.70	0.00	0.00	0.00	0.00	0.00	0.00	0.617651	1.000000
N	jcn_only_AA	MBD6	chr12	+	chr12:57922793-57922946;chr12:57922793-57922942	chr12:57922793-57924937		chr12:57922943-57922946;chr12:57922947-57924937	chr12:57922946-57922947;chr12:57924937-57924938		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.38	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.183551	0.663989
N	alternative_acceptor	SNRNP70,TRPM4	chr19	+	chr19:49605431-49607890	chr19:49605431-49606764		chr19:49606765-49607890	chr19:49607890-49607891		85.37	86.92	92.45	96.30	94.87	90.48	NA	NA	NA	NA	NA	NA	76.92	NA	80.00	70.00	80.00	NA	89.83	92.59	87.27	94.34	93.33	97.37	89.83	100.00	91.89	95.12	96.43	100.00	86.67	83.33	90.14	84.85	87.50	89.47	89.83	89.63	-0.20	0.330936	0.709013
K	intron_retention	VASP	chr19	+	chr19:46021009-46025792				chr19:46021008-46021009;chr19:46025792-46025793		85.00	74.19	86.74	77.78	81.25	NA	86.54	82.18	73.33	88.82	86.72	82.46	83.87	82.26	82.61	84.18	83.33	85.71	80.00	85.14	83.78	82.28	83.46	83.61	91.67	78.72	82.91	85.11	80.88	76.67	78.72	84.15	77.27	77.17	85.95	79.38	81.94	82.22	0.28	0.231854	1.000000
K	intron_retention	VSIG4	chrX	-	chrX:65242009-65242682				chrX:65242008-65242009;chrX:65242682-65242683		54.43	70.14	54.55	57.34	65.68	64.56	76.01	58.06	41.67	72.68	75.62	73.93	77.29	65.12	41.18	71.39	78.60	76.90	66.03	52.94	44.44	42.02	58.40	53.61	71.58	49.35	66.34	56.25	67.44	63.64	35.90	30.91	65.71	55.31	58.62	57.84	70.86	53.69	-17.17	0.133299	1.000000
N	alternative_acceptor	GAK	chr4	-	chr4:844858-845537;chr4:844890-845537;chr4:844806-845537	chr4:844873-845537		chr4:844806-844857;chr4:844858-844872;chr4:844873-844889	chr4:844805-844806;chr4:844857-844858;chr4:844872-844873		89.23	88.61	88.73	90.32	93.33	92.06	96.77	93.75	96.97	93.55	93.75	94.74	93.94	96.49	90.70	87.10	97.22	89.47	87.93	86.67	90.16	88.89	94.55	89.47	94.44	88.24	86.21	89.74	97.44	86.05	86.30	86.75	88.16	85.56	89.83	82.93	91.28	88.73	-2.54	0.521945	0.806364
K	jcn_only_AA	KAT5	chr11	+	chr11:65481320-65482130	chr11:65481320-65481965		chr11:65481966-65482130	chr11:65482130-65482131		96.08	100.00	95.35	100.00	100.00	NA	92.45	100.00	98.39	98.21	98.25	100.00	100.00	96.97	96.08	98.33	96.49	100.00	NA	100.00	100.00	100.00	97.56	93.62	100.00	95.65	100.00	96.67	91.30	100.00	96.00	95.12	NA	97.30	91.18	95.52	100.00	96.53	-3.47	0.763269	0.895110
N	alternative_acceptor		chr7	+	chr7:23313234-23316646;chr7:23313234-23313672;chr7:23313234-23314803;chr7:23313234-23314549;chr7:23313234-23313693	chr7:23313234-23313683		chr7:23313673-23313683;chr7:23313684-23313693;chr7:23313694-23314549;chr7:23314550-23314803;chr7:23314804-23316646	chr7:23313683-23313684;chr7:23313693-23313694;chr7:23314549-23314550;chr7:23314803-23314804;chr7:23316646-23316647		97.15	97.53	95.04	93.56	96.90	95.32	97.06	96.25	97.37	97.64	96.94	97.46	97.14	97.33	96.36	96.90	97.41	97.56	95.62	97.32	96.82	97.32	96.96	97.80	98.81	96.94	95.88	97.53	97.26	97.53	97.16	98.08	95.79	96.99	96.69	96.88	97.10	97.16	0.06	0.949850	0.989462
K	intron_retention	FAM134A	chr2	+	chr2:220046186-220046361				chr2:220046185-220046186;chr2:220046361-220046362		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	U2AF1,U2AF1L5	chr21	-	chr21:44514674-44514764				chr21:44514673-44514674;chr21:44514764-44514765		3.95	1.13	3.45	0.00	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	4.44	3.28	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.47	11.86	5.92	4.32	1.26	0.63	1.18	0.33	2.58	2.25	0.408479	1.000000
N	jcn_only_AD	DENND6B	chr22	-	chr22:50751055-50751427	chr22:50751055-50751412		chr22:50751413-50751427	chr22:50751427-50751428		0.00	0.00	NA	0.00	5.26	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	1.67	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.208062	0.657607
K	cassette	SRSF3	chr6	+	chr6:36566761-36568928	chr6:36566761-36567597;chr6:36568054-36568928		chr6:36567598-36568053			45.10	20.51	43.84	36.21	26.88	27.91	7.45	41.67	31.85	11.19	10.31	10.24	5.70	35.71	22.22	5.49	4.59	7.49	15.00	48.51	26.32	36.09	23.04	44.16	12.82	64.47	39.72	22.70	15.23	27.73	67.86	66.90	20.63	39.08	28.57	47.12	13.91	46.80	32.89	0.000342	0.058883
K	intron_retention	EIF2B4	chr2	-	chr2:27589804-27589940				chr2:27589803-27589804;chr2:27589940-27589941		5.88	15.15	15.62	6.90	14.04	4.55	0.00	0.00	0.00	0.00	0.00	NA	3.12	0.00	3.57	2.44	0.00	NA	11.54	5.26	7.32	9.68	17.31	18.18	33.33	0.00	9.52	3.23	14.89	6.67	9.52	15.56	9.76	14.29	11.36	13.64	10.65	2.63	-8.02	0.711879	1.000000
N	alternative_acceptor	MANBA	chr4	-	chr4:103553439-103555944;chr4:103554631-103555944	chr4:103554635-103555944		chr4:103553439-103554630;chr4:103554631-103554634	chr4:103553438-103553439;chr4:103554630-103554631		1.85	0.99	1.94	0.00	1.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	1.85	0.00	1.41	0.00	0.00	2.00	0.89	0.00	1.75	0.00	0.94	1.73	1.82	8.91	2.35	3.70	0.00	1.40	1.40	0.193497	0.660713
N	jcn_only_AD	ARSA	chr22	-	chr22:51065835-51066418;chr22:51065835-51065983	chr22:51065835-51066373		chr22:51065984-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		10.26	6.98	15.79	0.00	4.35	NA	4.05	2.53	4.23	9.43	10.29	3.70	3.70	5.00	3.51	0.00	2.22	2.63	0.00	11.43	0.00	0.00	9.52	5.41	0.00	6.94	7.35	2.94	5.77	3.85	9.38	13.73	16.67	4.00	2.78	0.00	3.88	8.16	4.29	0.438803	0.696909
N	alternative_donor	CDC16	chr13	+	chr13:115024874-115027361	chr13:115025040-115027361		chr13:115024874-115025039	chr13:115024873-115024874		0.00	7.41	5.88	0.00	0.00	NA	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	4.00	9.09	0.00	0.00	4.84	6.25	0.00	6.67	9.68	9.09	5.26	0.00	NA	6.45	4.76	3.23	4.17	0.00	2.00	0.00	-2.00	0.851446	0.958357
K	alternative_acceptor	CELF1	chr11	-	chr11:47492442-47493742;chr11:47493655-47493742	chr11:47490444-47493742		chr11:47490444-47492441;chr11:47492442-47493654	chr11:47490443-47490444;chr11:47492441-47492442		5.26	0.00	1.54	NA	0.00	0.00	0.00	20.00	2.90	0.00	0.00	0.00	2.70	27.27	3.80	2.08	0.00	0.00	0.00	10.53	0.00	0.00	0.00	4.17	0.00	7.14	0.00	0.00	0.00	5.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	8.83	8.83	0.017635	0.508745
K	intron_retention	ATF6B	chr6	-	chr6:32087735-32088547				chr6:32087734-32087735;chr6:32088547-32088548		13.33	16.13	16.22	NA	26.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	2.47	0.00	0.00	0.00	64.29	15.15	30.00	0.00	9.09	3.57	65.62	11.11	12.31	5.26	6.25	13.33	7.14	18.42	68.42	9.38	15.00	7.14	40.21	9.12	-31.09	0.208829	1.000000
K	jcn_only_AD	RPSA	chr3	+	chr3:39448326-39449111;chr3:39448574-39449111	chr3:39448256-39449111		chr3:39448256-39448325;chr3:39448326-39448573	chr3:39448255-39448256;chr3:39448325-39448326		88.24	100.00	94.57	98.41	98.25	100.00	99.06	87.80	100.00	99.41	99.52	98.57	99.29	95.45	100.00	99.39	99.45	99.26	97.62	84.62	96.77	98.00	98.37	97.37	100.00	100.00	94.44	100.00	99.55	99.18	83.33	79.17	95.74	99.05	97.87	99.62	99.18	88.02	-11.16	0.020655	0.339989
K	intron_retention	ATXN2L	chr16	+	chr16:28847498-28848048				chr16:28847497-28847498;chr16:28848048-28848049		95.92	100.00	95.83	100.00	95.24	87.50	92.59	84.21	88.57	93.75	93.75	90.91	100.00	84.21	84.78	85.19	91.43	91.67	95.00	91.67	96.23	92.86	94.44	92.00	92.50	87.50	91.89	93.10	91.84	93.94	97.78	96.74	98.08	92.68	92.73	92.73	96.54	89.59	-6.95	0.350522	1.000000
N	cassette	ARID4B,RBM34	chr1	-	chr1:235299086-235301191	chr1:235299086-235299348;chr1:235299389-235301191		chr1:235299349-235299388			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	98.51	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.799458	0.936947
K	alternative_acceptor	TRA2B	chr3	-	chr3:185636224-185637224	chr3:185636227-185637224		chr3:185636224-185636226	chr3:185636223-185636224		95.56	92.86	90.91	90.00	93.75	95.00	92.50	89.66	89.47	92.50	87.72	92.98	93.10	88.00	88.89	90.27	92.86	91.49	100.00	92.50	93.55	96.25	91.55	92.05	100.00	94.74	90.74	85.94	91.07	89.06	96.30	95.00	91.67	92.13	91.18	93.55	92.98	93.62	0.64	0.313824	0.709013
N	alternative_acceptor	TRIP10	chr19	+	chr19:6750645-6751232;chr19:6750645-6751041;chr19:6750645-6751044;chr19:6750645-6751365	chr19:6750645-6751073		chr19:6751042-6751044;chr19:6751045-6751073;chr19:6751074-6751232;chr19:6751233-6751365	chr19:6751044-6751045;chr19:6751073-6751074;chr19:6751232-6751233;chr19:6751365-6751366		98.81	98.68	97.90	97.22	100.00	97.53	100.00	96.30	99.26	96.36	96.15	96.99	NA	100.00	97.19	99.49	97.06	97.44	96.67	98.67	96.70	97.40	100.00	96.44	100.00	100.00	100.00	98.84	100.00	98.28	95.35	97.04	100.00	94.81	98.08	97.09	100.00	98.74	-1.26	0.412497	0.726722
N	alternative_acceptor		chr20	+	chr20:61912700-61913456;chr20:61912700-61914137	chr20:61912700-61914170		chr20:61913457-61914137;chr20:61914138-61914170	chr20:61914137-61914138;chr20:61914170-61914171		94.59	91.89	90.91	NA	100.00	NA	96.15	100.00	96.00	97.22	96.67	100.00	97.83	100.00	93.10	97.22	97.22	92.86	NA	96.00	100.00	94.74	93.75	85.71	84.62	95.65	96.77	95.24	94.74	100.00	95.00	96.30	95.45	89.19	93.75	93.10	95.45	95.83	0.38	0.204479	0.668672
N	jcn_only_AA	PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50362345;chr19:50361911-50363242	chr19:50361911-50363350		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		0.00	2.15	2.74	0.00	2.13	0.00	0.00	0.00	0.00	0.00	3.64	6.67	1.33	0.00	0.00	2.86	4.17	0.00	2.50	0.00	0.92	3.33	0.00	0.00	3.02	0.00	0.00	3.23	0.00	4.00	0.00	0.00	1.75	2.63	0.00	0.00	1.95	0.00	-1.95	0.008821	0.482846
K	alternative_acceptor	SELK	chr3	-	chr3:53919932-53920877	chr3:53919940-53920877		chr3:53919932-53919939	chr3:53919931-53919932		91.38	90.62	86.96	77.78	90.91	85.71	79.31	90.00	91.18	84.44	91.67	85.94	96.30	91.67	90.48	91.49	87.10	90.38	90.00	93.33	94.55	93.22	88.89	85.42	81.48	86.90	87.88	90.24	90.24	90.00	95.56	93.55	95.92	93.55	86.27	87.74	90.31	91.53	1.22	0.449377	0.755217
N	alternative_acceptor		chr7	+	chr7:150500545-150500680;chr7:150500545-150500811;chr7:150500545-150500750	chr7:150500545-150500707		chr7:150500681-150500707;chr7:150500708-150500750;chr7:150500751-150500811	chr7:150500707-150500708;chr7:150500750-150500751;chr7:150500811-150500812		100.00	94.12	100.00	NA	NA	NA	98.20	97.14	98.80	100.00	96.83	95.45	100.00	99.34	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.65	100.00	100.00	98.59	98.30	98.29	98.62	99.57	99.42	99.21	100.00	100.00	97.70	100.00	100.00	99.38	-0.62	0.743518	0.903518
N	jcn_only_AD	RND3	chr2	-	chr2:32264396-32264493	chr2:32264396-32264489		chr2:32264490-32264493	chr2:32264493-32264494		100.00	100.00	100.00	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	0.00	0.561337	0.778873
N	jcn_only_AD	NOSIP	chr19	-	chr19:50063950-50067411;chr19:50063950-50083771;chr19:50063950-50082397;chr19:50063950-50077847	chr19:50063950-50093412		chr19:50067412-50077847;chr19:50077848-50082397;chr19:50082398-50083771;chr19:50083772-50093412	chr19:50077847-50077848;chr19:50082397-50082398;chr19:50083771-50083772;chr19:50093412-50093413		0.00	0.00	0.00	0.00	0.00	6.67	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	1.59	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.178150	0.657607
K	intron_retention	KLC1	chr14	+	chr14:104145883-104151322				chr14:104145882-104145883;chr14:104151322-104151323		18.18	16.00	54.55	0.00	0.00	4.76	NA	0.00	NA	7.69	8.33	NA	14.29	9.09	NA	0.00	25.00	0.00	3.70	7.69	5.88	NA	13.33	NA	7.14	23.08	7.14	8.33	7.69	6.67	6.25	21.43	11.11	29.41	22.22	28.57	11.11	8.39	-2.72	0.734715	1.000000
K	intron_retention	DBNL	chr7	+	chr7:44097459-44097727				chr7:44097458-44097459;chr7:44097727-44097728		3.80	10.53	11.59	11.76	4.35	10.00	0.00	0.00	1.50	0.61	0.00	0.00	0.00	0.44	1.38	0.00	0.00	0.00	0.00	4.17	0.00	11.54	5.80	8.16	0.00	4.07	6.15	5.88	2.27	6.06	4.44	7.27	3.23	7.14	4.76	6.10	0.00	3.94	3.94	0.968630	1.000000
K	alternative_donor	SIRPA	chr20	+	chr20:1915401-1917965	chr20:1915413-1917965		chr20:1915401-1915412	chr20:1915400-1915401		4.23	5.19	4.12	4.00	5.26	3.85	3.07	5.44	4.85	5.01	4.04	6.20	4.76	5.12	5.11	5.85	4.69	5.85	0.00	4.44	4.79	3.30	4.04	4.60	9.09	4.67	4.43	4.72	4.33	6.45	3.03	3.31	0.00	5.59	4.76	5.24	3.92	4.55	0.64	0.602778	0.811474
K	cassette	COX7A2	chr6	-	chr6:75947705-75950891	chr6:75947705-75950016;chr6:75950102-75950891		chr6:75950017-75950101			98.08	100.00	95.95	96.33	97.22	96.83	99.55	99.38	98.84	98.35	98.54	97.89	99.21	98.16	97.44	98.26	98.24	96.81	98.19	99.38	98.90	95.91	98.06	94.87	100.00	99.43	98.04	98.62	98.66	96.77	99.10	98.79	99.32	97.20	97.89	99.00	99.44	99.24	-0.20	0.252738	0.709176
K	intron_retention	ATG2A	chr11	-	chr11:64662682-64662761				chr11:64662681-64662682;chr11:64662761-64662762		0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	4.17	0.00	0.00	NA	NA	NA	5.71	7.14	3.23	NA	0.00	NA	1.61	0.00	-1.61	0.776869	1.000000
K	alternative_donor	VAT1	chr17	-	chr17:41170817-41174156	chr17:41170817-41173952		chr17:41173953-41174156	chr17:41174156-41174157		100.00	100.00	100.00	NA	100.00	NA	97.73	100.00	100.00	98.03	98.16	97.92	98.63	100.00	100.00	96.49	98.01	96.92	NA	100.00	100.00	93.88	94.48	94.64	100.00	100.00	100.00	95.16	100.00	100.00	100.00	100.00	NA	98.82	97.14	96.00	99.31	100.00	0.69	0.200567	0.570816
N	alternative_donor		chr11	-	chr11:62446216-62446306;chr11:62446216-62446510	chr11:62446216-62446336		chr11:62446307-62446336;chr11:62446337-62446510	chr11:62446336-62446337;chr11:62446510-62446511		97.10	98.33	97.47	97.78	97.78	97.87	100.00	100.00	98.15	97.83	98.04	100.00	100.00	100.00	98.28	98.41	100.00	100.00	97.06	95.83	97.56	94.44	96.30	94.12	98.92	98.04	97.37	100.00	98.57	98.33	95.00	96.77	97.40	97.83	98.28	96.72	98.62	97.57	-1.06	0.364092	0.650093
N	alternative_donor	GADD45G	chr9	+	chr9:92220090-92220581	chr9:92220449-92220581		chr9:92220090-92220448	chr9:92220089-92220090		82.61	43.75	NA	85.00	66.67	85.19	NA	100.00	96.67	95.35	NA	100.00	NA	100.00	100.00	97.30	NA	100.00	61.54	81.82	88.89	92.86	61.54	93.55	68.75	100.00	NA	96.30	66.67	100.00	85.42	75.00	65.38	83.33	NA	95.45	63.46	92.71	29.25	0.003757	0.144201
K	alternative_last_exon	TAP2	chr6	-	chr6:32790096-32797176	chr6:32796812-32797176	chr6:32789610-32790095	chr6:32793192-32796811			98.80	95.65	98.41	100.00	92.86	98.15	96.15	98.31	99.42	96.67	100.00	100.00	100.00	97.22	98.42	100.00	100.00	97.44	100.00	97.89	98.48	100.00	94.12	98.48	92.31	98.21	100.00	100.00	100.00	100.00	100.00	99.34	100.00	100.00	100.00	99.15	98.08	98.26	0.18	0.467658	0.619765
K	alternative_acceptor	SCYL1,ZC3H12C	chr11	+	chr11:65305796-65305917	chr11:65305796-65305912		chr11:65305913-65305917	chr11:65305917-65305918		96.88	95.89	92.31	97.50	92.11	94.19	90.91	94.44	89.66	100.00	95.45	100.00	94.44	95.24	100.00	93.10	100.00	90.91	94.12	96.00	92.21	94.74	93.33	100.00	93.51	95.00	93.94	88.89	89.47	96.67	91.43	95.45	93.75	95.00	95.45	96.30	93.94	95.12	1.19	0.319794	0.709013
K	intron_retention	IKBKB	chr8	+	chr8:42178363-42179413				chr8:42178362-42178363;chr8:42179413-42179414		8.33	0.00	6.25	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	3.57	0.00	0.00	7.89	0.00	2.94	5.26	0.00	2.70	0.00	3.57	5.13	7.89	0.00	0.00	0.00	0.594508	1.000000
K	alternative_acceptor	STARD3	chr17	+	chr17:37814280-37814520;chr17:37814280-37814665	chr17:37814280-37814657		chr17:37814521-37814657;chr17:37814658-37814665	chr17:37814657-37814658;chr17:37814665-37814666		94.44	100.00	95.83	NA	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.21	96.77	93.75	95.24	100.00	100.00	90.00	96.43	93.75	100.00	97.37	100.00	100.00	96.55	95.45	100.00	93.94	NA	95.83	93.88	92.86	100.00	90.00	96.77	99.10	96.49	-2.61	0.930255	0.979440
K	intron_retention	DHX38	chr16	+	chr16:72142282-72142371				chr16:72142281-72142282;chr16:72142371-72142372		1.75	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	3.33	5.00	3.92	6.67	0.00	1.59	2.56	2.50	0.00	2.44	1.79	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.686957	1.000000
N	cassette	ARHGAP17	chr16	-	chr16:24931582-24942104;chr16:24931582-24940933	chr16:24931582-24939004;chr16:24939054-24940933,chr16:24939054-24942104		chr16:24939005-24939053			20.00	27.08	20.34	33.33	27.27	NA	27.78	25.64	24.32	33.33	34.15	35.71	38.30	28.57	36.00	32.26	40.00	22.22	27.59	18.75	30.30	33.33	37.50	37.50	31.25	16.39	18.06	20.83	39.58	30.77	15.09	14.29	21.62	22.50	27.91	23.64	27.69	19.38	-8.31	0.025673	0.412736
K	intron_retention	CD55	chr1	+	chr1:207510164-207510673				chr1:207510163-207510164;chr1:207510673-207510674		2.43	0.00	0.96	0.00	0.00	0.00	3.23	4.08	3.09	3.03	0.00	2.34	0.00	5.10	1.12	2.08	2.17	1.49	0.00	3.49	2.16	0.00	0.00	1.39	0.00	1.32	2.87	0.00	0.00	0.00	3.19	2.07	0.00	2.00	0.00	1.16	0.00	3.34	3.34	0.135786	1.000000
K	intron_retention	GMPR2	chr14	+	chr14:24705027-24705172				chr14:24705026-24705027;chr14:24705172-24705173		13.64	0.00	5.26	NA	0.00	NA	0.00	0.00	0.00	0.00	3.12	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	15.00	0.00	NA	5.26	NA	NA	9.76	7.32	NA	0.00	NA	0.00	0.00	NA	8.33	0.00	14.29	0.00	4.88	4.88	0.369877	1.000000
K	alternative_last_exon	PMF1-BGLAP	chr1	+	chr1:156206275-156212343	chr1:156206275-156209338	chr1:156212344-156212382	chr1:156209339-156209833			95.83	88.41	91.30	98.15	98.00	95.65	94.55	94.12	90.91	95.35	95.83	97.06	98.57	100.00	92.31	100.00	100.00	90.32	94.44	95.83	90.00	100.00	98.85	95.00	92.16	90.48	90.24	96.00	92.68	91.18	95.65	95.12	88.42	100.00	97.87	92.86	93.30	95.74	2.44	0.240474	0.458097
N	alternative_first_exon	AC113189.5,AKAP10	chr17	-	chr17:7485482-7486193;chr17:7485482-7487235	chr17:7485482-7486217	chr17:7487236-7487390	chr17:7486218-7486836			53.33	76.92	78.57	48.39	56.67	72.22	100.00	85.00	NA	75.00	75.00	NA	NA	66.67	NA	70.83	81.82	NA	NA	82.35	77.78	45.83	92.86	92.86	20.00	78.57	NA	85.00	71.43	NA	73.91	85.71	53.85	58.33	46.67	69.23	65.39	76.24	10.85	0.586165	0.698688
K	intron_retention	EIF4A1	chr17	+	chr17:7481235-7481437				chr17:7481234-7481235;chr17:7481437-7481438		97.53	100.00	100.00	97.00	96.09	89.53	NA	NA	NA	100.00	NA	NA	NA	NA	NA	93.75	100.00	NA	100.00	98.57	95.06	100.00	100.00	100.00	100.00	100.00	98.08	96.15	100.00	97.30	97.06	100.00	100.00	96.72	100.00	92.77	100.00	98.05	-1.95	0.152388	1.000000
N	cassette	ZBTB8OS	chr1	-	chr1:33093146-33116002;chr1:33093146-33100368;chr1:33093146-33116033;chr1:33099329-33116033	chr1:33099329-33099551,chr1:33093146-33099551;chr1:33099712-33116033,chr1:33099712-33116002,chr1:33099712-33100368		chr1:33099552-33099711			85.71	75.86	86.21	75.00	82.00	69.70	88.00	88.24	90.48	72.73	87.10	85.71	80.95	92.86	96.00	80.95	72.73	76.92	73.17	81.82	87.80	88.24	84.38	68.75	88.24	73.91	90.00	100.00	85.37	70.83	82.35	88.89	77.78	77.78	92.59	84.00	79.37	84.03	4.66	0.367046	0.709176
K	cassette	AKIP1	chr11	+	chr11:8933219-8936372	chr11:8933219-8933999;chr11:8934081-8936372		chr11:8934000-8934080			52.94	41.38	38.89	NA	50.00	NA	46.67	52.17	51.85	50.00	50.00	33.33	48.00	45.00	60.71	60.00	50.00	54.55	50.00	37.50	50.00	NA	60.87	NA	NA	33.33	44.44	NA	52.94	NA	63.64	36.84	NA	NA	61.54	NA	47.34	48.59	1.25	0.857234	0.951512
K	intron_retention	PPP6R2	chr22	+	chr22:50878287-50878389				chr22:50878286-50878287;chr22:50878389-50878390		10.20	15.25	10.00	4.00	6.67	5.26	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	6.82	1.82	6.25	7.69	8.70	11.29	8.16	10.71	0.00	7.69	10.00	13.79	8.22	13.24	9.09	5.56	6.82	10.19	7.49	-2.70	0.947940	1.000000
K	cassette	VPS26A	chr10	+	chr10:70925867-70930911	chr10:70925867-70928244;chr10:70928388-70930911		chr10:70928245-70928387			96.72	100.00	97.50	100.00	100.00	100.00	98.80	98.31	98.70	99.32	97.63	98.98	98.75	98.23	98.44	100.00	98.60	100.00	NA	94.74	96.30	94.55	100.00	98.39	NA	99.03	94.83	100.00	100.00	97.06	95.16	100.00	100.00	98.62	100.00	97.20	99.40	97.47	-1.93	0.022720	0.401090
K	intron_retention	CHMP1A	chr16	-	chr16:89713123-89713610				chr16:89713122-89713123;chr16:89713610-89713611		9.35	18.00	8.04	10.00	2.27	NA	0.00	1.95	0.00	0.77	0.71	0.00	0.80	0.66	1.75	0.70	1.67	1.28	7.69	5.68	2.17	5.66	8.54	7.25	12.50	3.42	6.60	6.67	4.11	4.17	9.30	6.90	11.54	6.90	5.56	9.38	9.62	4.55	-5.07	0.810162	1.000000
N	jcn_only_AA	CTSB	chr8	-	chr8:11701776-11702590;chr8:11701751-11702590	chr8:11702330-11702590		chr8:11701751-11701775;chr8:11701776-11702329	chr8:11701750-11701751;chr8:11701775-11701776		6.92	3.96	4.88	9.32	7.85	6.19	13.70	21.25	18.52	16.18	15.09	14.12	14.25	17.61	12.75	17.80	14.86	13.49	15.26	34.14	21.24	14.71	10.83	13.66	0.00	1.43	0.00	15.11	13.44	9.49	0.00	0.00	18.32	11.79	10.22	9.96	13.97	12.27	-1.71	0.679005	0.857124
N	coord_cassette	SEPW1	chr19	+	chr19:48282072-48287546	chr19:48282072-48283981;chr19:48284007-48284120;chr19:48284175-48284364;chr19:48284440-48287546		chr19:48283982-48284006;chr19:48284121-48284174;chr19:48284365-48284439			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.969508	0.984800
K	intron_retention		chr5	+	chr5:311518-314531				chr5:311517-311518;chr5:314531-314532		3.39	0.00	3.37	3.33	2.35	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	2.17	0.00	1.41	1.09	0.00	3.28	0.00	1.49	2.44	2.56	7.69	0.00	2.17	3.54	1.54	2.46	4.44	4.08	2.53	0.00	3.57	2.27	4.41	0.00	2.33	2.33	0.405440	1.000000
N	alternative_acceptor	INO80E	chr16	+	chr16:2011638-2011802	chr16:2011638-2011797		chr16:2011798-2011802	chr16:2011802-2011803		100.00	97.40	100.00	93.94	93.25	95.81	96.88	100.00	100.00	100.00	95.24	93.33	100.00	100.00	100.00	95.92	96.61	100.00	96.27	100.00	97.12	95.65	95.95	100.00	96.68	100.00	100.00	95.83	95.59	95.92	96.67	100.00	96.27	100.00	100.00	96.00	96.78	100.00	3.22	0.020746	0.527491
N	alternative_acceptor	S100A8	chr1	-	chr1:153363034-153363516	chr1:153363048-153363516		chr1:153363034-153363047	chr1:153363033-153363034		3.06	1.92	4.08	9.52	9.09	4.55	NA	1.24	1.25	NA	0.00	NA	0.00	1.71	3.70	0.00	0.00	0.00	2.08	4.62	4.63	9.52	9.38	0.00	0.00	2.56	3.90	5.56	6.25	11.36	1.58	5.60	6.42	6.52	5.44	7.25	1.92	2.13	0.21	0.778710	0.917646
K	intron_retention		chr1	-	chr1:52820612-52821069				chr1:52820611-52820612;chr1:52821069-52821070		7.69	11.76	12.50	0.00	12.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.72	0.00	0.00	0.00	3.70	5.19	6.25	12.77	9.23	6.15	NA	6.48	5.88	4.76	7.14	0.00	4.04	3.37	2.86	5.88	7.69	7.94	2.86	4.62	1.76	0.975495	1.000000
N	alternative_donor	LRRC25	chr19	-	chr19:18502936-18506994;chr19:18502936-18506885	chr19:18502936-18508262		chr19:18506886-18506994;chr19:18506995-18508262	chr19:18506994-18506995;chr19:18508262-18508263		0.86	2.94	0.50	0.00	3.39	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.28	0.00	10.00	2.87	0.00	0.00	2.58	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.80	3.60	0.00	0.00	0.00	0.00	0.00	0.43	0.43	0.772338	0.913984
N	alternative_acceptor	EXOSC10	chr1	-	chr1:11129788-11130956	chr1:11129880-11130956		chr1:11129788-11129879	chr1:11129787-11129788		0.00	6.02	1.72	0.00	2.25	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.67	0.00	2.53	0.00	2.04	2.08	1.79	0.00	0.00	0.00	0.00	1.64	3.12	0.00	0.00	1.35	1.02	0.00	-1.02	0.344777	0.709013
K	jcn_only_AD	KTN1	chr14	+	chr14:56146404-56150816	chr14:56147460-56150816					4.71	6.90	9.09	10.00	4.08	7.14	2.22	6.25	4.35	3.33	5.00	2.78	3.03	6.98	3.17	5.17	2.44	0.00	7.94	6.67	6.10	5.19	4.44	9.33	3.03	5.22	3.45	4.62	5.41	7.04	7.94	5.88	4.55	10.53	6.93	8.33	3.79	6.46	2.67	0.155556	0.657607
K	intron_retention		chr19	-	chr19:1108704-1108777				chr19:1108703-1108704;chr19:1108777-1108778		10.53	0.00	10.63	7.27	6.25	5.10	0.00	2.44	1.94	0.00	0.00	0.00	0.00	3.03	3.67	1.94	0.00	0.00	0.00	9.01	10.49	8.33	6.90	4.92	0.00	5.21	6.67	2.33	0.00	4.19	22.00	16.73	17.14	11.11	4.00	6.86	0.00	7.11	7.11	0.344758	1.000000
K	cassette	MINK1	chr17	+	chr17:4796363-4796728	chr17:4796363-4796580;chr17:4796605-4796728		chr17:4796581-4796604			6.06	0.00	0.00	NA	NA	NA	0.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	3.03	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.180050	0.709176
N	alternative_last_exon	PRKAA1	chr5	-	chr5:40747122-40764615	chr5:40763125-40764615	chr5:40746900-40747121	chr5:40759481-40763124			100.00	100.00	98.63	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	92.31	100.00	100.00	96.97	100.00	100.00	100.00	100.00	0.00	0.205942	0.432827
N	cassette	BECN1	chr17	-	chr17:40962947-40964248;chr17:40962947-40965965	chr17:40962947-40963672;chr17:40963816-40964248,chr17:40963816-40965965		chr17:40963673-40963815			92.65	100.00	86.32	94.44	85.71	86.67	90.79	98.04	96.67	81.82	84.21	86.67	90.24	93.48	93.06	85.45	82.56	86.00	92.86	95.00	92.00	89.47	86.08	86.36	100.00	92.98	95.77	100.00	87.72	86.36	91.07	90.00	84.38	95.24	88.89	84.72	91.83	93.23	1.41	0.766895	0.927321
N	jcn_only_AA	HYOU1	chr11	-	chr11:118917175-118917273	chr11:118917180-118917273		chr11:118917175-118917179	chr11:118917174-118917175		100.00	100.00	97.56	NA	100.00	NA	98.31	100.00	96.70	98.88	100.00	100.00	100.00	100.00	99.04	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.654965	0.846812
K	intron_retention	GTF2F1	chr19	-	chr19:6381490-6381564				chr19:6381489-6381490;chr19:6381564-6381565		3.60	3.45	3.28	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	0.00	0.00	2.50	0.94	3.03	0.00	2.78	0.00	6.25	0.74	0.00	1.61	0.00	1.12	5.71	2.02	2.50	3.28	0.00	2.15	2.50	0.84	-1.66	0.951082	1.000000
N	cassette	IFI44	chr1	+	chr1:79126340-79129449;chr1:79125169-79129449;chr1:79126377-79129449	chr1:79126340-79128388,chr1:79126377-79128388,chr1:79125169-79128388;chr1:79128564-79129449		chr1:79128389-79128563			97.73	100.00	100.00	96.83	100.00	98.33	91.67	96.85	97.02	97.14	92.31	97.20	91.67	91.99	93.66	93.16	97.22	97.19	98.15	96.86	99.21	97.92	100.00	98.38	100.00	97.87	100.00	98.23	100.00	97.83	94.92	96.00	93.18	97.32	100.00	97.24	95.67	96.85	1.19	0.894641	0.967641
K	intron_retention		chr12	+	chr12:123467086-123467166				chr12:123467085-123467086;chr12:123467166-123467167		17.74	18.34	20.25	13.19	11.61	12.50	0.53	2.63	2.33	1.60	2.25	0.00	2.19	2.94	4.95	0.00	1.58	0.00	11.33	14.58	11.45	9.26	13.46	14.58	16.43	9.68	19.75	6.80	9.29	11.86	22.92	24.69	18.12	7.59	11.58	9.43	13.88	12.13	-1.75	0.987662	1.000000
N	alternative_donor	SLC11A1	chr2	+	chr2:219259790-219260361	chr2:219260048-219260361		chr2:219259790-219260047	chr2:219259789-219259790		98.73	97.61	98.90	97.79	98.74	98.74	92.94	96.06	94.39	95.00	95.24	97.50	95.33	96.84	96.30	90.82	96.03	93.88	90.41	89.69	94.92	93.02	92.31	94.12	94.78	88.16	94.90	95.37	95.51	92.98	98.82	99.15	98.73	98.97	100.00	96.67	95.06	96.45	1.39	0.914580	0.981916
K	coord_cassette	TPRA1	chr3	-	chr3:127294109-127294782	chr3:127294109-127294245;chr3:127294349-127294591;chr3:127294653-127294782		chr3:127294246-127294348;chr3:127294592-127294652			96.77	100.00	100.00	100.00	96.67	97.06	100.00	100.00	100.00	99.38	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	94.81	100.00	100.00	100.00	100.00	98.89	100.00	100.00	100.00	96.30	100.00	97.37	100.00	100.00	100.00	100.00	0.00	0.205659	0.643829
K	intron_retention	AC008731.1	chr16	-	chr16:24930810-24930811				chr16:24930809-24930810;chr16:24930811-24930812		100.00	96.67	100.00	100.00	96.30	95.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.95	100.00	100.00	100.00	98.34	100.00	1.66	0.334871	1.000000
N	alternative_acceptor	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660742;chr9:35660645-35660767	chr9:35660645-35660770		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		17.95	22.52	16.00	10.00	7.69	0.00	8.70	10.53	0.00	10.00	14.81	NA	4.00	10.00	6.25	11.76	6.45	NA	16.67	20.00	23.21	30.00	5.36	NA	22.68	29.17	11.76	6.25	14.63	7.14	28.21	13.89	18.66	10.00	9.38	17.65	17.66	18.98	1.31	0.430925	0.740994
K	coord_cassette	MS4A7	chr11	+	chr11:60150762-60156862	chr11:60150762-60152560;chr11:60152696-60154189;chr11:60154247-60156862		chr11:60152561-60152695;chr11:60154190-60154246			93.19	100.00	83.33	90.00	91.30	100.00	95.88	98.42	93.48	100.00	96.88	99.35	98.33	100.00	100.00	98.70	99.54	100.00	83.33	96.83	100.00	100.00	97.47	100.00	NA	95.17	95.24	90.48	91.67	100.00	87.93	73.68	100.00	81.58	85.45	91.11	98.33	96.00	-2.33	0.946420	0.972993
N	cassette	NOSIP	chr19	-	chr19:50060507-50063190	chr19:50060507-50062153;chr19:50062231-50063190		chr19:50062154-50062230			100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.31	100.00	96.15	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.72	96.23	95.00	NA	83.33	100.00	100.00	100.00	0.00	0.780414	0.934744
K	intron_retention	ITGAX	chr16	+	chr16:31374075-31374255				chr16:31374074-31374075;chr16:31374255-31374256		0.00	0.00	1.49	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.71	0.00	0.00	6.25	0.00	3.12	2.04	2.88	0.00	8.82	0.00	2.04	0.00	0.98	0.00	0.00	0.00	5.00	1.48	0.00	0.00	2.50	0.00	-2.50	0.474487	1.000000
K	intron_retention		chr6	+	chr6:30620495-30620578				chr6:30620494-30620495;chr6:30620578-30620579		7.69	17.65	0.00	NA	13.64	NA	0.00	0.00	0.00	NA	0.00	NA	5.88	0.00	0.00	NA	0.00	NA	20.00	11.76	4.17	NA	11.11	NA	0.00	NA	0.00	NA	12.00	NA	7.69	11.76	23.53	NA	NA	10.00	11.76	7.69	-4.07	0.507861	1.000000
K	cassette	FLAD1	chr1	+	chr1:154961326-154962634	chr1:154961326-154962035;chr1:154962184-154962634		chr1:154962036-154962183			75.00	100.00	60.00	NA	62.50	NA	83.33	NA	89.47	NA	66.67	NA	76.92	80.00	84.21	69.23	70.00	NA	100.00	73.33	92.31	70.00	75.00	NA	NA	76.92	75.00	NA	70.59	83.33	NA	68.42	64.29	NA	87.50	72.73	83.33	75.96	-7.37	0.283516	0.709176
N	cassette	VMO1	chr17	-	chr17:4688955-4689438;chr17:4688955-4692946;chr17:4688955-4689452;chr17:4688955-4692779	chr17:4688955-4689195;chr17:4689348-4692946,chr17:4689348-4689452,chr17:4689348-4689438,chr17:4689348-4692779		chr17:4689196-4689347			99.50	100.00	97.06	100.00	97.34	99.31	100.00	99.53	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	68.42	63.31	78.76	78.57	82.81	84.44	100.00	99.77	-0.23	0.772334	0.931719
N	alternative_donor	CDK5RAP3	chr17	+	chr17:46053009-46053234;chr17:46053005-46053234	chr17:46053020-46053234		chr17:46053005-46053008;chr17:46053009-46053019	chr17:46053004-46053005;chr17:46053008-46053009		97.56	98.85	97.67	92.31	92.50	83.33	100.00	NA	NA	100.00	100.00	88.24	100.00	100.00	90.91	100.00	100.00	100.00	92.00	96.88	100.00	100.00	93.02	90.00	96.88	100.00	89.58	95.00	97.67	92.59	91.30	97.78	96.00	95.45	97.14	97.37	97.86	97.56	-0.30	0.946444	0.984606
N	cassette	PLXNB2	chr22	-	chr22:50724717-50726095	chr22:50724717-50725539;chr22:50725694-50726095		chr22:50725540-50725693			94.23	100.00	94.17	NA	NA	NA	99.23	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	NA	93.33	92.54	92.86	100.00	97.67	97.01	100.00	92.86	NA	100.00	94.67	93.75	93.48	95.08	92.86	100.00	98.84	-1.16	0.443250	0.746613
K	intron_retention	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31499183-31500556				chr6:31499182-31499183;chr6:31500556-31500557		16.18	10.23	15.74	11.30	8.14	7.50	1.96	0.00	2.86	0.00	3.94	3.28	4.48	6.67	7.61	5.32	2.03	3.77	7.73	13.42	11.43	9.28	10.22	12.00	8.33	13.51	13.16	9.89	4.44	8.33	16.45	15.15	7.72	13.30	10.13	12.08	7.72	13.46	5.74	0.483186	1.000000
K	intron_retention		chr19	-	chr19:55607547-55607629				chr19:55607546-55607547;chr19:55607629-55607630		1.52	5.00	0.00	6.67	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	4.76	0.00	2.78	4.17	4.76	0.00	0.00	0.00	0.00	3.57	2.33	0.00	0.00	0.00	0.00	2.94	1.89	2.50	0.00	0.00	0.00	0.670964	1.000000
N	cassette	ATP6V0A1	chr17	+	chr17:40665997-40673044;chr17:40665997-40668789	chr17:40665997-40666306;chr17:40666479-40668789,chr17:40666479-40673044		chr17:40666307-40666478			97.92	100.00	97.30	NA	80.00	NA	95.00	93.94	100.00	83.33	81.33	NA	98.78	100.00	92.86	93.94	84.51	NA	NA	96.55	100.00	93.33	86.79	90.00	100.00	100.00	92.11	90.00	92.11	NA	100.00	100.00	100.00	89.80	95.31	88.89	100.00	98.96	-1.04	0.634792	0.867338
K	alternative_donor	POLR2H	chr3	+	chr3:184081354-184082753	chr3:184081363-184082753		chr3:184081354-184081362	chr3:184081353-184081354		17.65	14.29	11.76	NA	6.25	NA	0.00	9.52	9.52	NA	0.00	NA	0.00	6.67	7.50	3.45	4.35	NA	4.76	6.25	5.00	0.00	21.43	NA	NA	18.18	2.78	NA	4.76	0.00	0.00	7.89	7.14	NA	15.38	9.09	4.76	8.09	3.33	0.283397	0.650093
N	coord_cassette	CD163L1	chr12	-	chr12:7510083-7521528	chr12:7510083-7519831;chr12:7519928-7520653;chr12:7520794-7521528		chr12:7519832-7519927;chr12:7520654-7520793			96.88	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	92.11	NA	NA	NA	100.00	NA	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.506475	0.715788
K	intron_retention		chr11	+	chr11:244076-244160				chr11:244075-244076;chr11:244160-244161		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.84	16.13	3.45	5.13	0.00	3.12	6.12	0.00	4.76	1.96	6.12	0.00	0.00	0.00	0.475043	1.000000
K	intron_retention	MED16	chr19	-	chr19:868947-871036				chr19:868946-868947;chr19:871036-871037		3.12	22.58	3.85	9.38	23.68	10.53	3.57	9.52	0.00	0.00	9.38	6.25	4.35	2.94	0.00	0.00	3.57	0.00	23.26	0.00	2.44	NA	20.00	33.33	40.00	11.11	4.00	10.53	28.57	10.00	5.26	4.76	23.68	18.18	7.14	11.11	22.92	4.19	-18.73	0.390943	1.000000
K	cassette	MTMR3	chr22	+	chr22:30418687-30421618	chr22:30418687-30419445;chr22:30419473-30421618		chr22:30419446-30419472			13.16	14.29	11.59	16.67	10.53	18.18	18.18	8.57	8.82	8.00	10.00	17.65	4.35	14.81	8.11	10.71	18.75	19.05	26.67	20.83	18.75	6.67	13.64	7.14	NA	13.04	13.64	8.33	10.00	NA	18.52	11.90	22.22	21.21	13.16	26.32	18.18	13.98	-4.20	0.601442	0.850526
K	jcn_only_AD	SMUG1	chr12	-	chr12:54576408-54577548	chr12:54576408-54577439		chr12:54577440-54577548	chr12:54577548-54577549		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	NA	100.00	100.00	95.35	100.00	100.00	100.00	97.92	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	95.83	100.00	100.00	96.97	97.83	100.00	100.00	95.00	100.00	100.00	0.00	0.174807	0.657607
K	intron_retention	GUSB	chr7	-	chr7:65439692-65441001				chr7:65439691-65439692;chr7:65441001-65441002		16.67	25.00	23.53	NA	16.13	NA	3.92	0.00	0.00	2.78	3.45	0.00	7.84	0.00	0.00	3.57	2.44	0.00	NA	NA	4.76	6.25	14.29	0.00	NA	16.67	16.67	5.88	13.33	0.00	0.00	6.25	14.29	15.00	16.00	0.00	11.06	0.00	-11.06	0.915094	1.000000
N	alternative_donor	MTCH1	chr6	-	chr6:36936751-36937814;chr6:36936751-36937462;chr6:36936751-36937070	chr6:36936751-36937076		chr6:36937071-36937076;chr6:36937077-36937462;chr6:36937463-36937814	chr6:36937076-36937077;chr6:36937462-36937463;chr6:36937814-36937815		6.17	4.52	6.93	5.95	4.37	1.75	1.92	0.68	2.10	2.16	1.55	1.32	2.37	1.76	4.32	3.43	2.91	1.86	2.67	3.66	3.25	6.94	6.14	7.53	3.33	1.99	3.77	13.73	6.98	8.40	3.25	5.07	2.94	5.81	6.22	5.50	2.80	2.62	-0.18	0.964456	0.988221
N	alternative_donor	IL10RA	chr11	+	chr11:117864865-117866303;chr11:117864789-117866303	chr11:117865502-117866303		chr11:117864789-117864864;chr11:117864865-117865501	chr11:117864788-117864789;chr11:117864864-117864865		3.54	14.29	4.85	NA	NA	NA	0.76	1.21	0.67	0.00	1.22	0.31	3.16	0.57	1.91	0.58	1.18	0.48	NA	2.90	0.00	3.33	2.44	3.33	40.91	3.38	4.46	1.89	3.23	0.79	3.39	4.00	NA	4.90	5.48	2.94	8.72	3.14	-5.58	0.274037	0.645608
N	cassette	IGFLR1	chr19	-	chr19:36230528-36231924;chr19:36230528-36231280	chr19:36230528-36230610;chr19:36230671-36231280,chr19:36230671-36231924		chr19:36230611-36230670			43.16	32.79	36.94	36.36	36.80	29.93	67.26	70.59	64.29	65.12	71.58	58.33	72.95	52.78	52.94	70.59	69.83	72.00	36.60	43.75	42.37	31.91	33.33	35.54	38.60	56.25	53.85	64.29	50.40	58.04	37.14	49.42	32.65	38.35	38.15	34.74	37.60	48.27	10.66	0.680446	0.883836
K	intron_retention		chr11	+	chr11:71940275-71940508				chr11:71940274-71940275;chr11:71940508-71940509		18.92	38.46	25.40	NA	NA	NA	2.74	0.00	0.00	0.00	1.49	0.00	4.35	1.59	5.36	2.78	3.61	NA	NA	12.50	NA	9.09	13.89	8.33	33.33	10.87	20.34	NA	4.76	NA	0.00	19.51	27.27	20.83	16.28	21.21	27.27	6.23	-21.04	0.291785	1.000000
N	jcn_only_AD	DAZAP1	chr19	+	chr19:1422396-1425876	chr19:1423455-1425876		chr19:1422396-1423454	chr19:1422395-1422396		5.56	0.00	0.00	0.00	0.00	NA	0.00	1.89	0.00	0.00	0.00	0.00	0.81	0.00	0.00	0.00	0.00	0.00	NA	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.94	0.94	0.160324	0.657607
N	jcn_only_AD	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001969-30002104;chr16:30001919-30002104	chr16:30001127-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		100.00	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	92.31	NA	93.75	NA	NA	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	91.67	87.50	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.848787	0.928405
N	jcn_only_AA	LIMD2	chr17	-	chr17:61776299-61776387;chr17:61767958-61776387	chr17:61776179-61776387		chr17:61767958-61776178;chr17:61776179-61776298	chr17:61767957-61767958;chr17:61776178-61776179		9.09	9.26	12.50	NA	14.71	NA	7.14	11.76	10.00	2.70	6.67	18.18	8.06	3.12	8.33	12.50	6.00	NA	8.33	NA	4.26	NA	8.57	NA	NA	15.38	17.39	14.29	5.13	NA	NA	5.00	9.38	NA	8.33	NA	8.33	10.43	2.10	0.627200	0.835767
N	jcn_only_AD	NFYC	chr1	+	chr1:41235088-41236380	chr1:41236288-41236380		chr1:41235088-41236287	chr1:41235087-41235088		0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	4.17	0.00	3.70	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	NR1H2	chr19	+	chr19:50882054-50882258;chr19:50882054-50882348;chr19:50882054-50882343	chr19:50882054-50882390		chr19:50882259-50882343;chr19:50882344-50882348;chr19:50882349-50882390	chr19:50882343-50882344;chr19:50882348-50882349;chr19:50882390-50882391		4.92	10.71	4.76	7.41	5.36	10.53	5.88	0.00	2.53	8.16	12.86	6.06	3.45	5.88	3.03	11.48	13.64	10.34	7.14	0.00	0.00	3.45	7.69	0.00	0.00	5.45	3.17	5.13	9.38	10.00	0.00	4.17	8.11	4.00	0.00	5.45	6.51	2.46	-4.05	0.137439	0.635210
N	coord_cassette	MTX2	chr2	+	chr2:177193641-177202220	chr2:177193641-177194028;chr2:177194155-177195311;chr2:177195389-177202220		chr2:177194029-177194154;chr2:177195312-177195388			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.33	100.00	95.83	NA	100.00	NA	NA	100.00	96.67	100.00	100.00	NA	NA	95.65	92.31	100.00	100.00	100.00	100.00	100.00	0.00	0.179241	0.643829
K	cassette	PREB	chr2	-	chr2:27354951-27355470	chr2:27354951-27355097;chr2:27355272-27355470		chr2:27355098-27355271			76.32	64.71	73.33	85.71	77.14	NA	98.04	91.67	100.00	93.33	94.64	100.00	100.00	91.30	90.32	97.56	94.44	93.75	76.92	70.37	88.00	80.77	65.91	83.33	NA	83.87	83.78	77.27	78.57	84.00	77.27	80.56	70.59	85.19	66.04	94.44	76.92	80.57	3.65	0.975959	0.995110
N	cassette	TM4SF19,TM4SF19-TCTEX1D2	chr3	-	chr3:196053904-196065134;chr3:196050869-196065134;chr3:196051312-196065134	chr3:196051312-196054260,chr3:196053904-196054260,chr3:196050869-196054260;chr3:196054463-196065134		chr3:196054261-196054462			100.00	88.37	NA	93.33	89.74	100.00	99.22	100.00	100.00	99.09	99.16	98.79	88.75	100.00	100.00	91.57	91.94	91.84	86.67	100.00	100.00	91.38	94.29	95.18	100.00	100.00	NA	100.00	97.65	100.00	95.65	100.00	96.15	91.86	89.81	91.18	92.45	100.00	7.55	0.054146	0.587075
N	alternative_acceptor	SOD2	chr6	-	chr6:160103618-160105885;chr6:160100331-160105885;chr6:160103671-160105885	chr6:160016237-160105885		chr6:160016237-160100330;chr6:160100331-160103617;chr6:160103618-160103670	chr6:160016236-160016237;chr6:160100330-160100331;chr6:160103617-160103618		4.92	0.00	4.21	0.00	0.00	0.00	NA	2.13	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	4.62	2.68	0.00	0.00	0.00	0.00	11.54	0.00	0.00	0.00	0.44	6.98	4.76	0.00	0.00	0.00	0.00	0.00	4.77	4.77	0.027475	0.546324
N	cassette	BRE	chr2	+	chr2:28521359-28561316;chr2:28521359-28550140	chr2:28521359-28532948;chr2:28533021-28550140,chr2:28533021-28561316		chr2:28532949-28533020			16.67	21.43	23.68	15.38	17.07	14.81	7.32	11.76	5.13	13.89	11.76	20.00	3.85	10.00	18.18	10.71	3.57	16.67	18.52	23.08	15.38	17.65	19.57	25.00	12.50	25.00	12.70	15.00	13.95	12.82	35.71	19.35	14.63	22.58	17.86	26.09	13.57	19.88	6.31	0.158468	0.709176
K	intron_retention	MYO1F	chr19	-	chr19:8619628-8620542				chr19:8619627-8619628;chr19:8620542-8620543		1.53	3.85	1.33	NA	0.00	NA	0.00	0.85	0.00	0.00	0.00	0.00	0.50	0.00	1.45	0.00	0.49	0.00	NA	0.00	3.85	0.00	0.00	0.00	6.98	2.68	1.14	0.00	1.59	0.00	2.27	1.79	0.00	2.00	0.00	0.00	0.50	1.19	0.69	0.857046	1.000000
K	intron_retention	DDX39A	chr19	-	chr19:14521147-14521800				chr19:14521146-14521147;chr19:14521800-14521801		10.00	5.71	17.07	7.69	3.33	11.11	0.00	5.88	0.00	0.00	2.78	2.63	1.52	9.52	4.00	1.98	2.41	0.00	4.17	10.00	2.94	9.80	5.49	8.20	9.52	8.33	7.14	5.88	6.35	5.56	16.67	8.16	1.92	7.35	6.67	8.06	3.04	9.76	6.71	0.114214	1.000000
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49954106-49954741	chr19:49954197-49954741		chr19:49954106-49954196	chr19:49954105-49954106		5.56	8.47	3.23	9.09	7.14	0.00	2.50	3.70	8.16	0.00	0.00	0.00	4.17	4.35	5.00	8.00	2.22	0.00	0.00	10.00	2.04	5.88	6.06	7.14	0.00	8.70	2.38	0.00	12.12	0.00	12.12	10.29	11.54	9.52	7.14	3.12	3.33	7.13	3.79	0.241201	0.663989
N	alternative_acceptor	FCGR2A	chr1	+	chr1:161479865-161480586;chr1:161479865-161480623	chr1:161479865-161480630		chr1:161480587-161480623;chr1:161480624-161480630	chr1:161480623-161480624;chr1:161480630-161480631		0.00	0.00	6.75	0.00	0.00	0.00	0.00	6.41	0.00	7.65	0.00	7.67	0.00	0.00	9.00	0.00	0.00	7.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.96	NA	0.00	4.41	0.00	0.00	0.00	0.00	0.363217	0.709013
N	alternative_acceptor	SYVN1	chr11	-	chr11:64896309-64897200;chr11:64896263-64897200	chr11:64896187-64897200		chr11:64896187-64896262;chr11:64896263-64896308	chr11:64896186-64896187;chr11:64896262-64896263		91.30	100.00	93.10	NA	100.00	NA	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	NA	95.00	100.00	100.00	90.91	86.96	NA	100.00	91.18	NA	93.33	100.00	100.00	91.89	100.00	92.86	90.00	93.10	100.00	100.00	0.00	0.193617	0.660713
K	intron_retention		chr12	-	chr12:7623994-7624441				chr12:7623993-7623994;chr12:7624441-7624442		74.07	59.09	77.78	62.50	62.86	69.23	NA	36.84	NA	NA	NA	NA	NA	35.29	NA	NA	NA	NA	65.00	62.50	65.52	NA	84.21	NA	38.24	48.28	67.61	65.71	84.38	74.58	NA	38.89	31.25	25.00	63.16	54.29	48.67	48.28	-0.39	0.472874	1.000000
N	alternative_acceptor	MARK2,RELT	chr11	+	chr11:73103514-73104881	chr11:73103514-73104857		chr11:73104858-73104881	chr11:73104881-73104882		6.17	13.64	6.96	NA	0.00	NA	2.27	3.12	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.26	0.00	0.00	3.57	0.00	20.00	4.76	3.08	0.00	4.17	NA	0.00	2.17	NA	4.88	5.88	4.55	7.96	3.69	-4.27	0.301676	0.709013
K	alternative_acceptor	EIF4A1	chr17	+	chr17:7481235-7481544;chr17:7481235-7481418;chr17:7481235-7481437	chr17:7481235-7481482		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		83.89	83.67	80.17	89.87	88.01	88.46	99.19	99.56	95.85	96.92	97.30	98.23	96.94	97.88	97.26	95.53	97.64	97.91	76.31	79.37	83.33	86.08	85.34	87.54	84.65	89.38	88.25	92.86	88.54	90.21	70.48	71.08	73.73	87.86	87.55	89.94	84.16	86.63	2.47	0.874402	0.956456
K	intron_retention	SREBF1	chr17	-	chr17:17716166-17716681				chr17:17716165-17716166;chr17:17716681-17716682		0.00	2.27	2.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	4.00	0.00	6.45	NA	7.41	14.29	3.92	0.00	6.67	NA	3.45	5.41	8.11	0.00	0.00	0.00	1.14	0.00	-1.14	0.555100	1.000000
N	jcn_only_AD	CD40	chr20	+	chr20:44756848-44756968;chr20:44756876-44756968	chr20:44756864-44756968		chr20:44756848-44756863;chr20:44756864-44756875	chr20:44756847-44756848;chr20:44756863-44756864		95.41	100.00	97.01	100.00	100.00	98.36	100.00	98.22	97.48	98.02	100.00	98.44	96.43	97.68	97.69	98.26	94.87	97.80	89.29	97.83	97.30	98.63	97.44	98.23	100.00	97.32	97.01	96.53	100.00	97.80	98.44	98.15	96.43	97.17	98.48	98.51	98.22	97.75	-0.46	0.803833	0.908253
N	alternative_donor	PGS1	chr17	+	chr17:76419377-76420141;chr17:76415807-76420141;chr17:76415757-76420141	chr17:76416405-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		5.26	4.17	13.93	0.00	0.00	9.52	0.00	9.38	7.95	10.71	6.67	14.29	0.00	9.76	9.22	13.04	0.00	14.29	6.67	13.89	5.66	15.38	8.33	17.24	NA	16.67	11.11	10.71	4.17	11.36	3.45	7.58	0.00	17.24	7.14	12.24	0.00	9.57	9.57	0.014478	0.251776
N	alternative_acceptor	CRTC2	chr1	-	chr1:153925311-153925741	chr1:153925335-153925741		chr1:153925311-153925334	chr1:153925310-153925311		1.79	0.00	6.62	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	NA	7.69	8.33	0.00	2.70	9.52	0.00	6.90	4.82	6.67	0.00	0.00	4.55	10.00	NA	6.45	6.38	10.53	0.00	3.17	3.17	0.053398	0.570243
N	cassette	P2RX4	chr12	+	chr12:121654806-121659715;chr12:121648102-121659715;chr12:121648102-121666335	chr12:121648102-121654936,chr12:121654806-121654936;chr12:121655085-121659715,chr12:121655085-121666335		chr12:121654937-121655084			90.85	100.00	95.59	100.00	92.31	90.00	96.91	97.27	96.18	92.90	94.66	93.49	94.69	96.70	95.56	94.95	94.59	90.87	100.00	94.05	96.67	93.75	94.70	89.25	NA	89.58	86.96	92.39	93.90	92.00	93.66	91.67	NA	91.60	93.81	92.54	98.45	93.85	-4.60	0.049970	0.564103
K	jcn_only_AA	BCKDHA,ZNF136	chr19	+	chr19:41929075-41930406	chr19:41929075-41930342		chr19:41930343-41930406	chr19:41930406-41930407		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	94.34	93.33	96.15	100.00	93.33	90.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	88.89	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.232179	0.663989
N	jcn_only_AA	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24680816-24680885;chr14:24680713-24680885;chr14:24680788-24680885;chr14:24680719-24680885	chr14:24680799-24680885		chr14:24680713-24680718;chr14:24680719-24680787;chr14:24680788-24680798;chr14:24680799-24680815	chr14:24680712-24680713;chr14:24680718-24680719;chr14:24680787-24680788;chr14:24680798-24680799		94.38	92.56	95.33	96.23	97.04	93.94	99.12	96.34	95.54	99.01	99.41	96.77	97.30	97.98	95.71	98.86	96.10	98.97	90.08	93.48	86.30	94.34	92.11	96.30	100.00	92.00	93.41	98.57	95.39	98.20	91.30	85.96	89.91	96.30	92.16	93.62	94.93	93.93	-1.00	0.791592	0.909279
K	cassette	GPX3	chr5	+	chr5:150400303-150404900	chr5:150400303-150400388;chr5:150400815-150404900		chr5:150400389-150400814			21.43	0.00	51.16	NA	8.33	NA	0.00	NA	NA	15.00	4.00	13.33	0.00	NA	NA	15.38	0.00	30.77	NA	40.00	18.75	23.08	4.55	30.43	NA	23.08	37.93	27.27	0.00	36.36	20.00	25.00	0.00	14.29	6.25	20.00	0.00	22.25	22.25	0.011258	0.316379
N	jcn_only_AD	SMG5	chr1	-	chr1:156233362-156234104;chr1:156233362-156235571	chr1:156233362-156236075		chr1:156234105-156235571;chr1:156235572-156236075	chr1:156235571-156235572;chr1:156236075-156236076		6.45	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	NA	0.00	NA	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
N	alternative_acceptor		chr17	+	chr17:41165900-41166129	chr17:41165900-41166124		chr17:41166125-41166129	chr17:41166129-41166130		96.33	100.00	100.00	92.73	90.91	92.80	95.12	96.48	94.94	96.67	100.00	96.06	95.56	96.39	95.83	94.67	100.00	100.00	94.83	93.80	96.99	100.00	100.00	94.93	100.00	94.81	91.30	93.68	100.00	95.17	95.73	94.17	93.88	94.64	95.00	94.46	95.34	96.03	0.69	0.442695	0.750981
K	intron_retention	TESK1	chr9	+	chr9:35606981-35607323				chr9:35606980-35606981;chr9:35607323-35607324		13.56	0.00	23.53	NA	8.33	NA	4.44	1.52	0.00	6.06	4.35	0.00	0.00	3.92	6.45	3.57	2.38	0.00	10.00	24.39	18.18	12.50	27.91	25.00	20.00	12.99	23.33	9.09	25.71	15.38	20.59	18.92	NA	13.73	17.14	10.26	4.44	13.28	8.84	0.975158	1.000000
N	jcn_only_AD	FRA10AC1	chr10	-	chr10:95430606-95435384;chr10:95430606-95431809;chr10:95430606-95431798;chr10:95430606-95431582	chr10:95430606-95436409					100.00	92.77	97.14	100.00	100.00	97.06	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	92.00	94.74	93.48	NA	92.86	NA	100.00	100.00	92.59	NA	100.00	100.00	100.00	97.14	92.13	93.33	100.00	100.00	96.38	100.00	3.62	0.276183	0.657607
N	jcn_only_AA	SLC26A11	chr17	+	chr17:78223087-78223980;chr17:78223087-78223764;chr17:78223087-78223974;chr17:78223087-78225127	chr17:78223087-78224971		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	5.00	0.00	0.00	5.56	6.67	6.82	0.00	7.14	4.35	7.14	5.08	0.00	2.22	0.00	0.00	2.82	0.00	3.53	0.00	0.00	0.00	0.541880	0.778406
N	cassette	ATG4B	chr2	+	chr2:242590751-242593960	chr2:242590751-242592926;chr2:242593026-242593960		chr2:242592927-242593025			96.67	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.43	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.91	100.00	97.50	100.00	100.00	100.00	0.00	0.985417	0.996694
K	intron_retention	YIPF3	chr6	-	chr6:43481190-43481325				chr6:43481189-43481190;chr6:43481325-43481326		3.31	2.47	3.52	6.25	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.32	0.00	4.76	3.85	1.82	4.44	1.80	3.15	0.00	3.03	0.00	4.59	4.41	3.70	2.67	2.20	2.56	1.24	2.56	1.32	0.945269	1.000000
K	alternative_donor	DNM2	chr19	+	chr19:10829080-10870413	chr19:10829323-10870413		chr19:10829080-10829322	chr19:10829079-10829080		1.04	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.43	NA	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.517624	0.768734
N	jcn_only_AA	MYL5	chr4	+	chr4:669999-672454;chr4:669999-671710	chr4:669999-672446					87.50	100.00	100.00	82.35	81.82	79.31	NA	NA	100.00	NA	NA	NA	NA	NA	85.71	NA	NA	NA	78.57	100.00	80.00	NA	NA	90.00	100.00	81.82	72.73	NA	100.00	83.33	70.59	77.78	100.00	80.00	75.00	80.00	100.00	84.66	-15.34	0.280247	0.663989
K	intron_retention	PHKG2	chr16	+	chr16:30764619-30764714				chr16:30764618-30764619;chr16:30764714-30764715		11.54	13.89	5.36	NA	5.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.76	0.00	0.00	2.78	NA	54.55	6.25	6.12	NA	6.06	NA	13.04	8.93	5.88	0.00	0.00	0.00	2.94	5.50	2.56	0.779936	1.000000
K	alternative_last_exon	C21orf33,CH507-9B2.3	chr21	+	chr21:45560225-45561045,chr21:45560225-45617053;chr21:45560225-45602117;chr21:45560225-45560823	chr21:45560225-45563086	chr21:45602118-45602168;chr21:45560824-45561299	chr21:45563087-45563243			77.27	86.30	88.89	37.50	75.00	21.43	90.80	83.33	90.00	80.95	90.00	81.82	90.11	80.00	89.19	84.21	86.76	NA	60.47	NA	65.96	80.00	90.38	NA	65.00	81.82	93.55	82.61	88.10	64.29	81.82	83.33	66.67	90.48	90.91	76.92	76.48	81.82	5.33	0.489729	0.634771
K	alternative_donor	C7orf49	chr7	-	chr7:134853813-134855027;chr7:134853813-134855150	chr7:134853813-134855403		chr7:134855028-134855150;chr7:134855151-134855403	chr7:134855150-134855151;chr7:134855403-134855404		28.57	70.00	60.00	NA	50.00	NA	63.89	42.86	48.00	75.00	68.29	NA	58.33	66.67	44.83	70.00	67.35	NA	NA	64.29	NA	NA	80.00	NA	80.00	NA	66.67	NA	78.95	NA	NA	30.77	NA	NA	71.43	27.27	66.94	53.58	-13.37	0.154756	0.563271
K	alternative_acceptor	SELM	chr22	-	chr22:31501952-31503362;chr22:31502033-31503362;chr22:31502150-31503362	chr22:31502102-31503362		chr22:31501952-31502032;chr22:31502033-31502101;chr22:31502102-31502149	chr22:31501951-31501952;chr22:31502032-31502033;chr22:31502101-31502102		1.83	0.00	2.07	0.00	0.00	0.00	NA	0.00	1.94	NA	NA	NA	NA	0.00	1.92	NA	NA	NA	0.00	2.60	2.74	0.00	0.00	0.00	0.00	1.96	2.39	NA	0.00	NA	2.50	2.97	0.00	NA	4.55	7.14	0.00	1.90	1.90	0.028066	0.546324
K	intron_retention		chr11	+	chr11:63993900-63994106				chr11:63993899-63993900;chr11:63994106-63994107		43.48	34.48	50.00	NA	42.11	NA	20.00	30.00	58.33	NA	27.27	NA	28.57	53.85	50.00	NA	23.08	NA	23.53	30.00	38.10	NA	NA	NA	60.00	NA	36.00	NA	31.25	NA	NA	40.00	NA	NA	28.57	NA	28.57	36.74	8.17	0.125613	1.000000
N	jcn_only_AA	AP1B1	chr22	-	chr22:29727875-29730253;chr22:29728044-29730253;chr22:29729534-29730253	chr22:29727906-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		94.74	100.00	100.00	100.00	97.25	NA	100.00	100.00	100.00	99.21	99.16	98.46	100.00	98.92	97.62	100.00	98.98	99.24	96.23	100.00	100.00	100.00	98.11	98.33	94.92	98.90	96.20	97.67	99.20	100.00	100.00	95.06	100.00	97.06	96.23	96.55	100.00	99.46	-0.54	0.856069	0.943751
K	intron_retention	RPL13	chr16	+	chr16:89628007-89628147				chr16:89628006-89628007;chr16:89628147-89628148		78.67	68.19	67.33	63.33	63.36	59.81	80.76	80.00	70.97	79.67	81.53	79.19	77.21	82.86	78.72	72.56	84.65	82.79	45.79	67.74	49.01	67.80	67.03	65.24	69.03	68.97	69.68	62.73	61.36	63.00	57.95	51.15	46.04	63.72	67.20	66.67	68.61	73.82	5.21	0.527900	1.000000
N	cassette	NDUFC1	chr4	-	chr4:140217115-140218538;chr4:140217115-140222117;chr4:140216301-140223569;chr4:140217115-140223569	chr4:140217115-140217485,chr4:140216301-140217485;chr4:140217522-140222117,chr4:140217522-140223569,chr4:140217522-140218538		chr4:140217486-140217521			8.82	0.00	0.00	16.67	14.29	7.27	0.00	8.89	4.00	16.00	5.88	18.10	6.67	11.54	5.26	10.34	11.76	17.20	9.09	3.57	0.00	11.11	11.76	13.64	6.67	11.43	12.00	19.23	15.38	18.63	11.11	3.85	0.00	0.00	0.00	12.00	3.33	10.00	6.67	0.028505	0.424338
N	alternative_donor	EHBP1L1	chr11	+	chr11:65341234-65346548;chr11:65345750-65346548	chr11:65343878-65346548		chr11:65341234-65343877;chr11:65343878-65345749	chr11:65341233-65341234;chr11:65343877-65343878		77.78	87.80	77.42	92.86	96.55	NA	97.06	97.56	100.00	100.00	100.00	NA	97.30	95.45	93.55	100.00	96.43	NA	93.10	78.79	96.83	NA	92.31	NA	87.50	80.56	86.00	90.91	95.00	90.00	83.33	81.40	95.12	85.71	85.71	83.33	94.11	81.94	-12.17	0.102873	0.504923
K	jcn_only_AA	RAD23A,ZNF568	chr19	+	chr19:13059974-13060091	chr19:13059974-13060088		chr19:13060089-13060091	chr19:13060091-13060092		41.27	36.11	40.00	42.42	40.00	50.00	45.54	51.39	53.33	56.92	57.03	48.48	45.71	55.88	51.43	52.10	55.13	44.30	39.29	35.06	40.00	43.94	39.71	50.94	48.39	51.67	47.50	44.44	48.54	42.42	48.53	43.01	31.88	45.36	42.72	50.00	42.41	49.96	7.55	0.165713	0.663989
N	alternative_donor	SIGLEC9	chr19	+	chr19:51629386-51630286;chr19:51630164-51630286	chr19:51630151-51630286		chr19:51629386-51630150;chr19:51630151-51630163	chr19:51629385-51629386;chr19:51630150-51630151		1.79	0.00	4.92	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.01	2.63	0.93	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	1.90	5.88	0.00	3.85	1.92	1.64	0.94	0.00	0.00	0.00	0.00	3.03	3.41	0.00	0.00	0.00	0.00	0.288709	0.650093
K	intron_retention	CTA-363E6.7	chr16	+	chr16:19513212-19513299				chr16:19513211-19513212;chr16:19513299-19513300		94.12	89.02	95.00	90.00	94.66	90.62	92.59	100.00	100.00	100.00	100.00	NA	96.15	100.00	95.45	100.00	100.00	NA	93.26	100.00	100.00	100.00	92.31	90.91	90.88	100.00	96.59	100.00	93.10	93.33	100.00	94.37	91.98	100.00	100.00	100.00	92.28	100.00	7.72	0.002601	0.935843
K	intron_retention		chr19	+	chr19:17294678-17295673				chr19:17294677-17294678;chr19:17295673-17295674		19.57	14.52	8.60	NA	NA	NA	0.66	1.05	1.02	0.56	0.39	0.00	1.62	0.00	2.52	0.00	0.72	0.00	10.53	5.33	0.00	7.35	10.07	9.80	18.92	4.04	11.48	3.77	6.49	4.17	12.90	14.04	29.41	7.75	7.25	8.23	12.52	4.69	-7.84	0.621186	1.000000
K	intron_retention	PNKP	chr19	-	chr19:50367494-50367580				chr19:50367493-50367494;chr19:50367580-50367581		15.79	17.14	16.13	NA	22.22	NA	0.00	NA	9.09	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.26	4.35	11.11	NA	20.00	NA	NA	11.76	13.64	NA	30.00	NA	13.04	20.00	16.67	11.76	21.43	10.00	5.26	12.40	7.14	0.850999	1.000000
N	alternative_donor	HNMT	chr2	+	chr2:138759914-138762701;chr2:138761703-138762701	chr2:138759765-138762701		chr2:138759765-138759913;chr2:138759914-138761702	chr2:138759764-138759765;chr2:138759913-138759914		90.00	100.00	88.89	NA	NA	NA	97.66	96.22	95.65	97.22	94.74	96.97	96.73	95.65	96.88	96.92	94.12	96.00	NA	94.92	92.86	91.67	90.32	93.33	NA	91.72	93.57	88.24	90.91	100.00	96.55	90.38	90.00	89.47	92.00	93.75	97.19	95.28	-1.91	0.464588	0.721956
N	cassette	CTD-3214H19.4,STXBP2	chr19	+	chr19:7703662-7704616	chr19:7703662-7703904;chr19:7703987-7704616		chr19:7703905-7703986			100.00	93.44	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.25	100.00	100.00	98.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.64	100.00	100.00	95.83	100.00	100.00	100.00	0.00	0.418195	0.728056
K	intron_retention	HGS	chr17	+	chr17:79663778-79663853				chr17:79663777-79663778;chr17:79663853-79663854		12.90	5.88	11.54	10.00	19.05	NA	0.00	0.00	0.00	1.08	4.62	2.27	1.82	1.54	3.61	1.00	2.47	0.00	11.76	7.46	18.00	11.59	12.50	11.76	5.56	5.45	13.75	13.56	11.25	19.61	13.16	19.81	3.23	7.07	16.00	13.74	4.39	6.46	2.06	0.999380	1.000000
N	alternative_acceptor	SUGP2	chr19	-	chr19:19101959-19104456	chr19:19102350-19104456		chr19:19101959-19102349	chr19:19101958-19101959		66.67	48.03	67.57	56.52	49.30	47.83	NA	NA	NA	NA	NA	NA	71.43	NA	NA	NA	NA	NA	52.04	68.75	50.00	66.67	52.00	46.15	59.30	61.54	48.78	66.67	62.79	61.11	52.38	45.45	44.05	48.28	51.52	43.75	52.04	64.11	12.07	0.263489	0.709013
N	cassette	CMC2	chr16	-	chr16:81031035-81040338;chr16:81031957-81040338	chr16:81031035-81034852,chr16:81031957-81034852;chr16:81034940-81040338		chr16:81034853-81034939			0.00	0.00	0.00	NA	6.06	NA	2.38	0.00	1.89	11.11	11.54	8.33	5.77	0.00	0.00	5.97	3.33	5.00	0.00	0.00	3.70	3.33	5.56	5.26	NA	0.00	0.00	5.88	6.38	5.26	0.00	0.00	0.00	3.57	6.45	8.11	0.00	0.00	0.00	0.223634	0.709176
K	intron_retention	RPS2	chr16	-	chr16:2013258-2014276				chr16:2013257-2013258;chr16:2014276-2014277		0.00	0.39	0.62	0.00	0.12	0.00	0.00	0.00	0.83	0.80	0.73	0.00	0.00	0.00	0.00	0.34	0.37	0.00	0.00	1.69	0.29	0.58	0.12	0.53	0.00	0.00	1.52	1.83	2.46	1.55	1.67	5.32	0.55	1.61	1.38	2.76	0.00	0.00	0.00	0.616180	1.000000
K	alternative_donor	DLG4	chr17	-	chr17:7107572-7111393;chr17:7107572-7111492	chr17:7107572-7108264		chr17:7108265-7111393;chr17:7111394-7111492	chr17:7111393-7111394;chr17:7111492-7111493		11.76	30.77	19.05	NA	NA	NA	4.76	0.00	0.00	NA	4.55	NA	3.23	0.00	8.33	NA	3.23	0.00	NA	NA	NA	NA	NA	NA	58.33	9.09	30.00	NA	10.00	NA	NA	7.69	NA	NA	20.00	NA	17.77	4.54	-13.22	0.239938	0.610791
N	cassette	MPP1	chrX	-	chrX:154011783-154013325	chrX:154011783-154012302;chrX:154012384-154013325		chrX:154012303-154012383			97.89	93.83	95.89	100.00	98.49	100.00	100.00	100.00	100.00	99.43	99.74	100.00	99.64	100.00	98.67	99.44	99.72	99.51	94.87	96.10	98.00	98.70	97.76	98.44	100.00	99.53	96.40	100.00	99.41	98.83	98.82	95.06	91.43	96.95	98.82	98.57	97.25	99.17	1.92	0.245981	0.709176
K	alternative_donor	BRMS1	chr11	-	chr11:66108518-66108683	chr11:66108518-66108676		chr11:66108677-66108683	chr11:66108683-66108684		94.44	100.00	97.06	100.00	100.00	95.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	98.28	100.00	94.74	100.00	100.00	100.00	100.00	0.00	0.174896	0.563271
K	cassette	STAT6	chr12	-	chr12:57501098-57504911;chr12:57501527-57504911	chr12:57501098-57501945,chr12:57501527-57501945;chr12:57502083-57504911		chr12:57501946-57502082			97.78	100.00	98.33	NA	NA	NA	100.00	100.00	100.00	94.74	100.00	94.87	100.00	100.00	97.83	98.11	96.88	100.00	NA	100.00	NA	100.00	100.00	94.74	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.88	100.00	96.49	100.00	100.00	0.00	0.232741	0.709176
K	alternative_acceptor	ATG16L2	chr11	+	chr11:72528901-72532592;chr11:72528901-72532712;chr11:72528901-72532243	chr11:72528901-72531181		chr11:72531182-72532243;chr11:72532244-72532592;chr11:72532593-72532712	chr11:72532243-72532244;chr11:72532592-72532593;chr11:72532712-72532713		52.00	28.89	44.62	NA	NA	NA	15.38	NA	NA	NA	NA	NA	38.46	NA	NA	NA	NA	NA	70.00	42.86	45.45	NA	48.00	NA	60.71	41.67	48.57	NA	42.11	NA	30.00	41.30	38.46	41.18	54.17	61.54	38.46	42.27	3.80	0.971220	0.993213
K	intron_retention	GET4,SUN1	chr7	+	chr7:933453-933535				chr7:933452-933453;chr7:933535-933536		11.36	7.25	8.57	2.50	1.03	1.79	0.00	0.00	0.00	0.00	0.00	0.00	7.14	5.13	2.38	0.00	0.00	0.00	5.75	7.69	2.70	5.56	6.98	9.09	2.44	6.90	6.52	4.26	4.05	2.00	9.84	11.54	7.84	5.77	4.08	6.38	6.45	7.29	0.85	0.718017	1.000000
K	intron_retention		chr17	+	chr17:74729460-74729602				chr17:74729459-74729460;chr17:74729602-74729603		2.78	2.97	2.17	11.11	5.17	0.00	0.00	0.00	8.33	0.00	2.63	0.00	2.56	0.00	8.00	0.00	5.26	NA	5.08	7.14	4.88	7.14	6.25	9.09	0.00	0.00	2.22	0.00	4.08	0.00	9.52	2.86	4.48	8.70	0.00	6.25	2.77	1.39	-1.38	0.963563	1.000000
N	cassette	CLN3,RP11-435I10.4	chr16	-	chr16:28493704-28493928	chr16:28493704-28493797;chr16:28493867-28493928		chr16:28493798-28493866			88.24	82.05	87.50	90.00	74.36	88.89	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.86	95.24	91.67	89.29	95.00	100.00	90.91	81.48	100.00	72.73	86.96	NA	100.00	88.46	86.36	90.91	75.00	75.00	90.91	85.00	96.97	85.67	92.95	7.28	0.235310	0.709176
N	alternative_acceptor	EIF4G2	chr11	-	chr11:10821304-10821636;chr11:10821331-10821636;chr11:10821157-10821636	chr11:10821322-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		1.71	2.63	1.51	5.26	1.69	NA	0.00	0.42	0.31	0.00	0.21	0.00	0.00	0.00	0.31	0.25	0.00	0.00	0.00	1.64	0.00	0.80	0.63	1.44	NA	1.27	1.13	0.65	0.50	1.06	3.30	2.24	8.33	0.48	1.18	1.08	0.00	1.46	1.46	0.655359	0.874938
K	intron_retention	CTSL	chr9	+	chr9:90342618-90343632				chr9:90342617-90342618;chr9:90343632-90343633		91.05	96.82	89.30	89.94	88.24	90.85	91.81	89.41	90.02	91.20	91.59	90.71	90.08	89.71	89.62	89.21	90.74	91.98	89.74	90.14	90.46	93.32	92.32	91.76	81.90	90.63	90.49	92.61	91.61	92.90	91.55	90.18	89.76	90.63	89.52	90.83	89.92	90.38	0.46	0.795135	1.000000
K	intron_retention		chr7	-	chr7:45005460-45005671				chr7:45005459-45005460;chr7:45005671-45005672		5.00	0.00	3.83	8.20	6.06	18.52	NA	0.76	0.42	0.00	0.00	0.00	0.00	0.29	2.30	3.23	0.00	2.13	7.69	7.08	3.29	7.69	7.69	9.23	7.14	5.03	5.38	6.80	3.57	4.17	5.74	7.69	5.88	9.30	6.45	10.74	5.88	5.02	-0.86	0.419912	1.000000
K	alternative_acceptor	DDB1	chr11	-	chr11:61068405-61069728	chr11:61068409-61069728		chr11:61068405-61068408	chr11:61068404-61068405		0.00	0.00	1.80	0.00	0.75	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	1.92	1.41	0.81	0.50	2.67	0.00	0.00	1.03	0.00	0.00	0.00	2.70	4.21	5.10	1.08	0.46	1.14	0.70	0.00	-0.70	0.566054	0.831954
K	alternative_last_exon	PVRL2	chr19	+	chr19:45377736-45379037,chr19:45377736-45381809,chr19:45377736-45383271;chr19:45377736-45385467	chr19:45377736-45381479	chr19:45385468-45385621	chr19:45381480-45382198			60.94	80.27	51.52	90.53	89.73	95.29	61.11	73.72	71.60	69.51	68.75	67.79	65.06	75.63	69.01	72.41	63.77	61.55	96.55	57.04	86.55	73.74	75.00	65.54	100.00	67.86	61.38	81.07	85.40	86.22	69.43	56.39	93.07	68.46	62.11	67.42	86.67	68.65	-18.02	0.079470	0.281549
K	alternative_acceptor	SNAP23	chr15	+	chr15:42822018-42823610;chr15:42822018-42837406	chr15:42822018-42837333		chr15:42823611-42837333;chr15:42837334-42837406	chr15:42837333-42837334;chr15:42837406-42837407		0.00	11.76	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	8.33	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	20.00	NA	0.00	NA	0.00	0.00	0.00	0.196435	0.661496
K	cassette	RAB35	chr12	-	chr12:120535178-120536833	chr12:120535178-120536614;chr12:120536740-120536833		chr12:120536615-120536739			82.89	67.86	78.95	NA	68.00	NA	91.49	91.06	90.54	92.86	94.83	93.15	93.26	89.76	93.67	95.68	92.11	97.30	NA	75.56	78.95	85.94	80.00	88.10	NA	81.05	71.01	89.29	84.06	94.00	85.71	77.46	75.00	88.76	80.46	88.03	83.25	84.30	1.05	0.733675	0.907179
K	intron_retention	TRMT112	chr11	-	chr11:64084441-64084529				chr11:64084440-64084441;chr11:64084529-64084530		4.37	3.27	4.05	2.55	1.84	1.10	0.94	2.21	4.08	0.72	1.67	0.00	0.00	3.54	1.82	1.32	2.53	0.85	1.58	2.81	3.27	2.63	2.36	2.33	3.53	3.40	1.83	1.43	1.35	1.06	9.05	8.23	4.52	2.31	1.72	1.47	2.42	3.47	1.04	0.382138	1.000000
N	alternative_donor	DENND2D,NADK	chr1	-	chr1:111731876-111734761	chr1:111731876-111733628		chr1:111733629-111734761	chr1:111734761-111734762		20.83	9.09	21.21	15.79	14.29	9.09	3.51	4.11	2.50	2.56	7.14	7.02	13.04	1.52	4.35	5.56	6.25	6.06	NA	15.38	7.14	19.05	17.39	32.50	NA	12.50	20.69	9.80	9.38	5.32	12.00	14.29	18.18	25.00	20.69	26.37	11.06	12.25	1.19	0.981613	0.994374
N	cassette	PSTPIP1	chr15	+	chr15:77327905-77329385	chr15:77327905-77328142;chr15:77328277-77329385		chr15:77328143-77328276			95.00	96.07	100.00	100.00	98.25	94.05	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	99.16	100.00	98.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	88.89	98.18	96.93	100.00	96.23	97.06	99.58	97.50	-2.08	0.384267	0.709410
N	cassette	GLTSCR2	chr19	+	chr19:48249041-48253434	chr19:48249041-48250223;chr19:48250289-48253434		chr19:48250224-48250288			92.73	97.31	97.86	98.04	97.93	96.59	98.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.29	100.00	100.00	95.83	95.65	94.74	94.57	96.89	96.70	100.00	100.00	100.00	100.00	100.00	100.00	84.85	94.33	90.26	100.00	97.27	93.51	98.13	97.83	-0.30	0.612654	0.855635
N	alternative_acceptor	P4HB	chr17	-	chr17:79813565-79817056;chr17:79813382-79817056	chr17:79813463-79817056		chr17:79813382-79813462;chr17:79813463-79813564	chr17:79813381-79813382;chr17:79813462-79813463		92.28	85.83	88.69	97.14	91.14	84.62	91.55	91.96	91.54	86.93	88.74	86.05	91.38	91.30	91.14	94.08	87.41	86.27	91.43	92.86	90.37	94.48	95.80	93.12	91.89	90.43	91.99	95.14	92.16	95.53	94.30	92.96	90.91	92.35	93.72	94.76	91.41	92.12	0.72	0.158944	0.660713
K	jcn_only_AD	S100A12,USF1	chr1	-	chr1:161012008-161012375	chr1:161012008-161012344		chr1:161012345-161012375	chr1:161012375-161012376		55.96	61.54	59.02	63.64	68.09	NA	65.15	57.97	62.65	66.67	58.73	56.00	65.85	60.92	62.64	62.16	59.46	58.33	72.22	64.94	51.28	70.59	64.29	57.89	37.04	65.12	66.07	76.92	62.00	66.67	55.07	54.44	62.50	64.00	66.67	54.55	63.83	59.45	-4.38	0.895967	0.947036
N	alternative_donor	PITPNM1	chr11	-	chr11:67263074-67263648	chr11:67263074-67263148		chr11:67263149-67263648	chr11:67263648-67263649		0.00	6.45	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.373901	0.650093
N	cassette	C1orf162	chr1	+	chr1:112018688-112019955;chr1:112018688-112020604	chr1:112018688-112019419;chr1:112019701-112020604,chr1:112019701-112019955		chr1:112019420-112019700			100.00	91.94	100.00	NA	100.00	NA	100.00	NA	NA	100.00	97.75	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.12	100.00	100.00	100.00	97.62	100.00	90.48	100.00	95.74	100.00	98.75	100.00	NA	100.00	94.83	100.00	100.00	97.14	94.97	100.00	5.03	0.036266	0.477876
N	alternative_donor	VRK3	chr19	-	chr19:50484271-50491628;chr19:50484271-50485074	chr19:50484271-50485124		chr19:50485075-50485124;chr19:50485125-50491628	chr19:50485124-50485125;chr19:50491628-50491629		4.00	3.45	0.00	7.14	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	3.70	3.70	3.57	0.00	5.88	NA	3.85	3.57	2.38	0.00	7.14	5.56	0.00	4.55	0.00	5.56	5.88	3.85	1.73	1.78	0.06	0.970239	0.992109
N	jcn_only_AA	CAP1,MAP7D1	chr1	+	chr1:36622065-36636571	chr1:36622065-36626964		chr1:36626965-36636571	chr1:36636571-36636572		3.28	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45479438		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		4.76	0.00	7.51	NA	NA	NA	4.44	4.41	7.65	6.37	3.61	4.39	4.64	4.75	8.47	4.63	4.88	4.62	NA	5.71	7.06	0.00	0.00	7.02	0.00	5.95	8.28	6.49	8.57	6.02	0.00	0.00	0.00	2.56	2.99	3.73	0.00	4.75	4.75	0.123366	0.663989
N	coord_cassette	EGLN2,RAB4B-EGLN2	chr19	+	chr19:41307321-41332468	chr19:41307321-41312459;chr19:41312580-41313042;chr19:41313180-41332468		chr19:41312460-41312579;chr19:41313043-41313179			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	cassette	ITGB1BP1	chr2	-	chr2:9552535-9563501;chr2:9552535-9558754	chr2:9552535-9554306;chr2:9554386-9558754,chr2:9554386-9563501		chr2:9554307-9554385			79.17	75.00	91.67	100.00	84.00	NA	95.88	88.46	94.74	88.99	94.49	93.51	95.74	95.83	100.00	93.75	93.83	100.00	NA	70.83	80.56	91.18	80.00	100.00	NA	92.31	71.43	95.83	96.30	100.00	76.47	62.50	86.36	91.89	89.58	83.72	91.05	83.81	-7.23	0.513234	0.791847
K	cassette	HDAC10,MAPK12	chr22	-	chr22:50685396-50686318	chr22:50685396-50686120;chr22:50686206-50686318		chr22:50686121-50686205			75.00	70.83	66.67	81.82	67.86	70.00	100.00	NA	NA	NA	NA	NA	94.12	NA	78.57	90.91	NA	NA	64.52	73.68	71.88	NA	68.00	70.00	62.79	91.67	79.17	81.82	84.21	86.67	47.06	50.00	57.14	66.67	66.67	72.22	67.67	74.34	6.67	0.803391	0.936947
K	intron_retention	RP4-583P15.15,ZGPAT	chr20	+	chr20:62366177-62366510				chr20:62366176-62366177;chr20:62366510-62366511		7.32	5.45	5.56	3.12	1.64	3.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	2.63	1.67	2.50	8.00	2.17	3.66	2.44	2.94	0.00	2.70	1.14	6.82	3.17	5.17	2.78	5.26	4.00	2.77	2.54	-0.24	0.893400	1.000000
N	cassette	EPB41L3	chr18	-	chr18:5393478-5395065;chr18:5393478-5395607	chr18:5393478-5394675;chr18:5394793-5395065,chr18:5394793-5395607		chr18:5394676-5394792			91.78	100.00	89.46	93.18	87.34	93.33	95.89	81.90	88.13	90.77	92.20	92.13	92.50	72.29	81.98	81.34	87.06	90.14	100.00	89.77	86.81	95.04	89.37	89.45	NA	91.79	93.05	91.15	93.59	91.89	93.06	95.94	100.00	85.17	93.89	87.57	100.00	90.78	-9.22	0.020685	0.390745
K	jcn_only_AD	LMNA	chr1	+	chr1:156107024-156108278	chr1:156107535-156108278					100.00	100.00	100.00	100.00	98.73	100.00	100.00	94.83	100.00	96.92	100.00	93.75	99.10	100.00	100.00	99.41	99.56	100.00	100.00	98.00	90.91	97.06	98.43	93.02	100.00	100.00	100.00	97.53	98.74	100.00	93.88	100.00	95.12	99.11	97.01	94.55	100.00	99.00	-1.00	0.390794	0.657607
K	jcn_only_AD	PPCS	chr1	+	chr1:42924977-42925273;chr1:42923022-42925273	chr1:42923239-42925273		chr1:42923022-42923238;chr1:42923239-42924976	chr1:42923021-42923022;chr1:42923238-42923239		0.00	0.00	3.77	NA	0.00	NA	0.00	2.08	3.28	12.50	8.57	0.00	3.95	4.76	5.08	2.50	3.23	0.00	0.00	5.71	0.00	0.00	5.13	0.00	0.00	5.00	4.88	18.18	0.00	0.00	0.00	0.00	0.00	0.00	3.57	5.56	0.00	3.42	3.42	0.103635	0.643330
N	alternative_donor	PGS1	chr17	+	chr17:76419377-76420141;chr17:76415807-76420141;chr17:76416405-76420141	chr17:76415757-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		54.39	83.33	46.72	69.57	86.36	71.43	84.62	56.25	68.18	53.57	60.00	42.86	58.33	53.66	44.68	43.48	54.55	35.71	80.00	47.22	77.36	26.92	54.17	29.31	NA	42.86	51.28	53.57	62.50	56.82	75.86	63.64	85.71	27.59	35.71	31.63	83.33	54.02	-29.30	0.008584	0.211749
N	jcn_only_AD	CCDC9	chr19	+	chr19:47761921-47763577	chr19:47761968-47763577		chr19:47761921-47761967	chr19:47761920-47761921		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10942979;chr19:10941055-10941653	chr19:10941055-10943667		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		0.00	0.00	1.76	0.00	0.00	11.11	0.00	0.00	0.00	1.79	2.68	0.00	0.00	0.00	0.00	4.00	0.00	0.00	5.48	1.58	2.44	0.00	1.95	0.00	5.00	0.00	0.00	1.41	0.00	0.00	2.33	2.30	4.49	3.74	0.87	0.00	2.25	0.00	-2.25	0.172481	0.663989
K	intron_retention	LMF2	chr22	-	chr22:50943157-50943230				chr22:50943156-50943157;chr22:50943230-50943231		4.48	0.00	1.85	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	5.17	0.00	3.33	1.92	0.00	4.17	2.30	0.00	0.00	0.00	0.00	6.78	6.06	0.00	0.00	2.38	1.49	0.00	3.39	3.39	0.758678	1.000000
K	jcn_only_AA	FCHO1,WDR18	chr19	+	chr19:17898656-17899092	chr19:17898656-17899078		chr19:17899079-17899092	chr19:17899092-17899093		0.00	3.45	5.88	NA	5.56	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	3.28	0.00	4.55	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	5.88	NA	NA	NA	3.37	0.00	-3.37	0.079559	0.663989
K	alternative_donor	TMEM208	chr16	+	chr16:67262535-67262699	chr16:67262561-67262699		chr16:67262535-67262560	chr16:67262534-67262535		1.47	1.66	6.41	3.26	2.42	3.57	1.41	3.70	2.86	2.13	1.79	3.33	1.27	0.00	4.17	3.88	1.45	0.00	1.79	2.47	2.37	1.22	3.20	3.77	0.00	5.71	0.00	3.33	2.38	6.02	3.03	4.96	1.57	1.06	2.33	2.44	1.49	2.75	1.26	0.134854	0.549706
K	jcn_only_AD	ATF6B,HMGN3	chr6	-	chr6:32095528-32095902	chr6:32095528-32095893		chr6:32095894-32095902	chr6:32095902-32095903		85.37	100.00	90.14	NA	NA	NA	81.58	90.41	89.16	82.69	80.81	80.00	85.63	83.58	90.28	81.33	87.10	80.49	NA	78.95	81.82	84.62	88.64	78.26	86.67	90.62	90.20	94.74	90.70	100.00	NA	85.19	NA	85.19	83.78	91.89	86.15	85.37	-0.78	0.583023	0.791676
N	cassette	PSME2	chr14	-	chr14:24614675-24615416	chr14:24614675-24614918;chr14:24614962-24615416		chr14:24614919-24614961			97.86	95.45	96.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.77	96.53	100.00	100.00	100.00	100.00	98.98	97.19	100.00	100.00	100.00	95.10	94.57	95.83	100.00	100.00	99.10	100.00	98.42	-1.58	0.830342	0.942757
K	intron_retention	INPP5K	chr17	-	chr17:1399174-1399353				chr17:1399173-1399174;chr17:1399353-1399354		0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	13.04	9.38	3.33	0.00	NA	NA	0.00	0.00	0.00	0.888442	1.000000
N	cassette	FIP1L1	chr4	+	chr4:54310271-54324819	chr4:54310271-54319086;chr4:54319310-54324819		chr4:54319087-54319309			100.00	94.59	94.74	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	NA	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	90.91	100.00	100.00	100.00	100.00	100.00	97.50	-2.50	0.206655	0.709176
K	intron_retention		chr16	+	chr16:722567-722702				chr16:722566-722567;chr16:722702-722703		13.64	15.62	17.14	11.76	16.67	6.25	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	5.88	0.00	0.00	NA	5.41	8.00	9.68	0.00	11.86	5.56	11.43	8.00	15.00	11.54	20.00	5.26	18.18	14.06	28.12	12.12	12.20	14.58	8.42	8.00	-0.42	0.999403	1.000000
K	alternative_acceptor	GMIP	chr19	-	chr19:19747597-19747725	chr19:19747606-19747725		chr19:19747597-19747605	chr19:19747596-19747597		56.67	68.42	61.29	NA	NA	NA	65.91	64.37	64.86	59.52	71.43	64.00	71.93	66.67	58.97	65.91	68.00	71.43	NA	58.33	NA	NA	58.33	66.67	57.14	52.38	59.26	64.29	76.92	NA	38.89	46.15	NA	54.17	57.69	64.71	67.16	57.50	-9.66	0.098067	0.598353
N	cassette	CTDP1	chr18	+	chr18:77475529-77477809	chr18:77475529-77477534;chr18:77477677-77477809		chr18:77477535-77477676			80.00	55.56	83.33	100.00	100.00	NA	94.44	100.00	90.48	100.00	89.47	100.00	100.00	100.00	100.00	100.00	94.74	100.00	NA	86.36	93.75	100.00	90.00	100.00	NA	85.71	95.00	100.00	100.00	100.00	92.00	100.00	80.00	100.00	100.00	100.00	87.22	89.18	1.96	0.481608	0.772079
K	alternative_first_exon	ZFAT,ZNF706	chr8	-	chr8:102213972-102217322;chr8:102213972-102216877,chr8:102213972-102214560;chr8:102213972-102217662	chr8:102213972-102218081	chr8:102216878-102217007;chr8:102217663-102217960	chr8:102218082-102218292			1.08	0.00	0.90	4.88	0.00	16.67	1.31	1.41	0.91	6.63	1.86	13.45	0.71	1.59	0.93	4.90	1.71	9.35	0.00	0.00	1.72	4.59	2.04	16.44	0.00	1.89	0.00	3.06	0.65	2.27	2.27	1.43	0.00	3.57	1.12	13.10	0.00	1.50	1.50	0.027006	0.118071
N	alternative_acceptor	MMP14	chr14	+	chr14:23306135-23308336;chr14:23306135-23310699	chr14:23306135-23306389		chr14:23306390-23308336;chr14:23308337-23310699	chr14:23308336-23308337;chr14:23310699-23310700		0.17	1.16	0.33	6.25	0.00	13.33	0.00	0.16	0.11	0.17	0.18	0.28	0.00	0.17	0.26	0.40	0.11	0.19	0.00	0.24	0.79	0.35	0.26	0.30	0.00	0.30	0.11	0.42	0.00	0.92	0.38	0.13	0.00	0.71	0.24	0.43	0.00	0.21	0.21	0.833794	0.940678
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100982536-100983114;chr9:100975501-100983114	chr9:100979480-100983114		chr9:100975501-100979479;chr9:100979480-100982535	chr9:100975500-100975501;chr9:100979479-100979480		2.17	4.55	4.35	NA	0.00	NA	0.00	2.38	0.00	2.44	1.00	NA	2.33	3.45	6.67	2.08	2.13	NA	NA	2.27	0.00	4.76	3.26	9.09	5.88	3.92	2.56	3.85	1.09	NA	1.39	1.96	0.00	4.26	3.57	5.88	2.33	2.33	-0.00	0.972817	0.993779
K	jcn_only_AD	RNF149,SUCLG1	chr2	-	chr2:84658784-84660475	chr2:84658784-84659441		chr2:84659442-84660475	chr2:84660475-84660476		0.00	0.00	6.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	2.78	1.16	3.57	0.00	0.00	2.04	0.00	0.00	0.00	6.90	4.92	0.00	1.49	2.15	3.08	0.00	0.00	0.00	0.224336	0.657607
N	alternative_acceptor		chr17	+	chr17:7414639-7414745	chr17:7414639-7414724		chr17:7414725-7414745	chr17:7414745-7414746		96.08	100.00	94.62	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.59	100.00	96.97	100.00	100.00	100.00	NA	100.00	93.65	NA	97.44	100.00	97.92	100.00	100.00	0.00	0.179035	0.660713
K	intron_retention	AP2A1	chr19	+	chr19:50306634-50308709				chr19:50306633-50306634;chr19:50308709-50308710		3.42	0.00	5.03	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	1.26	0.00	1.39	0.00	0.00	2.61	1.77	3.33	1.33	5.26	0.00	2.22	1.91	0.00	3.23	0.00	2.33	2.30	2.00	2.27	3.70	3.92	0.00	2.28	2.28	0.515316	1.000000
K	intron_retention	HGS	chr17	+	chr17:79668162-79668537				chr17:79668161-79668162;chr17:79668537-79668538		3.23	2.83	5.13	5.32	2.59	6.33	0.00	0.00	1.61	0.00	1.35	2.70	0.00	0.00	2.78	0.00	0.00	0.00	1.52	2.41	3.17	4.26	5.47	5.43	0.00	1.30	0.89	2.15	2.80	3.60	5.34	5.62	4.04	4.35	4.95	7.10	0.76	1.85	1.09	0.799880	1.000000
K	intron_retention	CPSF3L	chr1	-	chr1:1247882-1247972				chr1:1247881-1247882;chr1:1247972-1247973		5.00	4.08	11.36	3.57	8.62	5.36	0.00	0.00	0.00	4.55	0.00	0.00	4.17	0.00	6.45	0.00	8.00	0.00	3.96	9.38	3.66	6.90	13.21	4.17	10.14	4.76	6.82	0.00	7.69	3.45	11.76	9.59	8.04	10.34	7.14	4.35	4.12	4.88	0.75	0.993042	1.000000
K	alternative_acceptor	CPSF3L	chr1	-	chr1:1249302-1249680	chr1:1249486-1249680		chr1:1249302-1249485	chr1:1249301-1249302		5.00	8.51	17.65	14.29	16.00	7.69	3.85	0.00	4.55	0.00	0.00	0.00	4.00	NA	6.90	6.90	2.33	0.00	6.67	8.70	10.34	13.64	21.43	20.00	26.67	10.53	12.50	9.52	16.67	11.76	21.43	13.51	13.64	16.67	12.90	15.15	7.59	8.70	1.11	0.783236	0.917646
N	alternative_acceptor		chr1	+	chr1:156108399-156109167	chr1:156108399-156108870		chr1:156108871-156109167	chr1:156109167-156109168		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	97.22	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	alternative_donor	AL136419.6,MDP1,NEDD8-MDP1	chr14	-	chr14:24683358-24683515	chr14:24683358-24683467		chr14:24683468-24683515	chr14:24683515-24683516		6.67	0.00	11.11	9.09	15.38	11.11	12.50	NA	4.55	NA	NA	NA	0.00	NA	9.09	NA	8.33	NA	8.51	6.67	13.64	NA	5.56	NA	13.16	10.00	22.22	NA	16.67	NA	0.00	15.79	7.14	10.00	11.76	9.09	7.82	6.67	-1.15	0.748695	0.897355
N	alternative_acceptor	ABHD16A,XXbac-BPG32J3.20	chr6	-	chr6:31655304-31655418	chr6:31655322-31655418		chr6:31655304-31655321	chr6:31655303-31655304		100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	S100A11	chr1	-	chr1:152006277-152009628;chr1:152006277-152009388	chr1:152006277-152020297		chr1:152009389-152009628;chr1:152009629-152020297	chr1:152009628-152009629;chr1:152020297-152020298		0.00	0.00	0.00	3.45	7.89	10.81	0.00	0.00	0.00	0.00	0.00	2.67	0.00	0.00	2.33	0.00	0.00	0.00	8.33	6.82	2.44	0.00	4.55	0.00	0.00	4.76	3.23	0.00	8.11	1.89	6.52	11.43	3.57	7.32	3.45	5.97	0.00	2.38	2.38	0.610100	0.816192
N	cassette	BBC3	chr19	-	chr19:47730012-47735771;chr19:47730012-47734185;chr19:47730012-47736038	chr19:47730012-47731414;chr19:47731704-47735771,chr19:47731704-47734185,chr19:47731704-47736038		chr19:47731415-47731703			NA	59.38	57.14	NA	NA	NA	75.00	90.00	75.86	NA	NA	NA	83.33	69.23	75.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	66.67	70.00	81.82	NA	NA	NA	100.00	58.82	70.00	NA	NA	NA	70.00	80.00	10.00	0.245610	0.709176
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49950725-49951083;chr19:49950678-49951083	chr19:49950675-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		8.11	0.00	2.38	4.35	7.14	4.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	6.06	6.06	5.56	0.00	4.35	NA	7.58	0.00	0.00	0.00	0.00	0.00	9.09	10.42	8.97	0.00	10.00	7.69	3.03	3.03	0.00	0.966007	0.991031
N	jcn_only_AD	RALA	chr7	+	chr7:39663425-39726229;chr7:39684757-39726229	chr7:39664027-39726229		chr7:39663425-39664026;chr7:39664027-39684756	chr7:39663424-39663425;chr7:39664026-39664027		4.76	0.00	4.39	5.88	6.78	0.00	2.04	3.15	3.00	2.87	0.00	4.94	1.96	3.08	3.28	3.38	0.00	5.00	NA	8.06	3.64	3.85	4.26	3.85	0.00	3.53	4.40	5.05	1.92	4.05	7.50	8.62	0.00	2.59	2.27	3.74	0.00	4.14	4.14	0.004079	0.177805
K	jcn_only_AD	HTRA2	chr2	+	chr2:74758499-74758723	chr2:74758539-74758723		chr2:74758499-74758538	chr2:74758498-74758499		0.00	0.00	5.88	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	NA	3.57	NA	14.29	0.00	0.00	NA	0.00	6.67	3.45	10.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.626294	0.816300
N	jcn_only_AA	GGCX	chr2	-	chr2:85786199-85787937	chr2:85786939-85787937		chr2:85786199-85786938	chr2:85786198-85786199		0.00	0.00	11.76	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	7.69	4.76	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	10.53	0.00	NA	0.00	7.14	0.00	0.00	0.00	0.922699	0.974340
N	alternative_acceptor	PLEK	chr2	+	chr2:68615624-68620293	chr2:68615624-68615993		chr2:68615994-68620293	chr2:68620293-68620294		0.83	3.12	1.78	0.00	0.00	NA	0.15	0.17	0.00	0.06	0.13	0.05	0.31	0.19	0.00	0.09	0.24	0.00	NA	0.63	0.00	0.61	0.97	0.22	10.00	0.72	0.68	0.63	0.58	0.00	0.53	0.90	0.00	0.93	1.36	0.35	0.31	0.58	0.27	0.313062	0.709013
K	intron_retention		chr19	+	chr19:1241991-1242454				chr19:1241990-1241991;chr19:1242454-1242455		8.82	3.48	12.50	4.35	7.14	2.86	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	1.01	0.00	2.20	0.00	3.61	0.00	5.94	0.00	4.35	NA	0.00	0.00	3.53	0.00	11.76	5.56	1.64	0.00	2.78	2.13	1.92	0.00	-1.92	0.831022	1.000000
K	intron_retention	ITGAM	chr16	+	chr16:31338257-31339467				chr16:31338256-31338257;chr16:31339467-31339468		6.38	3.80	8.57	0.00	4.08	NA	0.97	0.00	0.00	0.49	0.63	0.00	0.00	0.00	NA	1.00	0.88	0.00	4.76	4.55	2.17	10.87	8.46	0.00	5.56	2.38	11.11	5.00	5.19	0.00	3.03	8.43	12.12	2.92	5.85	0.00	4.28	2.71	-1.57	0.803619	1.000000
K	intron_retention	TMEM219	chr16	+	chr16:29983462-29984270				chr16:29983461-29983462;chr16:29984270-29984271		86.96	54.55	100.00	NA	68.75	63.64	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	64.00	85.71	60.00	NA	66.67	NA	59.62	79.17	81.82	64.29	63.64	73.68	75.00	75.00	57.69	54.55	NA	88.89	58.66	82.44	23.78	0.038055	1.000000
K	alternative_last_exon	BRD4	chr19	-	chr19:15355574-15364962;chr19:15360102-15364962	chr19:15364595-15364962	chr19:15355521-15355573;chr19:15357858-15360101	chr19:15363803-15364594			7.69	11.76	8.11	6.67	5.00	8.00	0.00	2.56	2.70	2.78	2.94	3.45	3.33	3.03	4.44	2.17	6.06	3.33	20.00	5.88	8.33	6.67	8.70	9.52	14.29	4.55	4.55	5.56	4.35	4.35	11.76	4.76	7.14	6.90	6.90	7.69	9.45	5.21	-4.23	0.325597	0.523459
N	alternative_donor	RARS2	chr6	-	chr6:88226599-88227886	chr6:88226599-88227763		chr6:88227764-88227886	chr6:88227886-88227887		0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	3.33	0.00	0.00	4.76	3.23	0.00	0.00	3.33	2.08	1.47	3.23	0.00	4.35	0.00	0.00	0.00	0.271653	0.645499
K	intron_retention		chr1	-	chr1:173833443-173833621				chr1:173833442-173833443;chr1:173833621-173833622		9.52	4.65	5.26	7.56	4.61	2.38	1.52	NA	0.00	9.38	8.62	9.09	6.78	NA	4.55	6.85	9.09	NA	4.29	15.79	4.95	12.17	8.97	12.16	1.45	0.00	8.06	12.28	9.90	9.30	22.45	12.50	5.12	8.85	5.26	8.51	4.47	12.65	8.18	0.684239	1.000000
K	intron_retention	RNF123	chr3	+	chr3:49758539-49758617				chr3:49758538-49758539;chr3:49758617-49758618		8.33	13.89	8.47	6.67	7.50	0.00	22.58	NA	17.65	26.92	23.08	35.71	23.08	18.75	5.56	58.33	27.50	31.25	2.38	12.12	4.44	31.82	12.82	37.50	2.44	5.88	5.56	23.81	17.86	36.84	16.00	7.69	3.08	6.67	16.67	20.00	8.48	12.12	3.63	0.815161	1.000000
K	intron_retention	MINK1	chr17	+	chr17:4799128-4799297				chr17:4799127-4799128;chr17:4799297-4799298		16.00	12.50	11.11	NA	8.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	NA	8.33	4.35	4.00	7.14	7.32	0.00	23.53	5.26	4.55	0.00	8.11	NA	11.11	12.16	8.33	6.67	5.88	3.70	8.33	5.26	-3.07	0.738539	1.000000
N	jcn_only_AA	EIF4G2	chr11	-	chr11:10821304-10821636;chr11:10821322-10821636;chr11:10821331-10821636	chr11:10821157-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		1.43	9.38	1.15	5.00	4.35	NA	0.99	1.61	1.23	1.11	1.54	1.31	1.05	1.58	2.05	1.64	2.06	2.12	15.38	4.29	8.93	2.28	2.53	1.91	NA	2.37	2.49	2.50	3.03	4.84	7.69	4.53	9.09	1.29	1.24	1.56	9.09	1.99	-7.10	0.228223	0.663989
N	jcn_only_AA	VPS41	chr7	-	chr7:38765680-38766508	chr7:38765927-38766508		chr7:38765680-38765926	chr7:38765679-38765680		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	96.55	97.56	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_donor	PABPC4	chr1	-	chr1:40029595-40030142	chr1:40029595-40030094		chr1:40030095-40030142	chr1:40030142-40030143		28.57	41.89	26.67	38.46	46.03	NA	52.63	54.55	47.83	58.62	56.58	60.00	52.75	53.33	39.13	45.71	62.96	60.00	36.36	36.36	33.33	32.31	42.71	38.98	52.00	35.71	43.75	48.78	45.57	53.57	24.56	25.81	41.03	25.64	38.75	37.04	46.95	36.03	-10.91	0.252821	0.624542
K	intron_retention	PML	chr15	+	chr15:74326872-74335329				chr15:74326871-74326872;chr15:74335329-74335330		9.33	0.00	11.11	0.00	0.00	2.26	0.00	6.72	5.13	21.74	NA	16.28	0.00	9.17	7.56	11.36	NA	24.14	0.00	7.37	0.00	NA	NA	18.64	0.00	10.17	6.90	11.11	NA	8.82	8.25	9.23	0.00	18.42	10.00	19.44	0.00	8.71	8.71	0.076723	1.000000
K	intron_retention		chr9	+	chr9:95870099-95872849				chr9:95870098-95870099;chr9:95872849-95872850		7.89	2.44	9.09	8.00	5.17	0.00	3.03	1.96	2.63	0.00	2.33	0.00	5.97	2.90	5.77	3.00	3.01	0.00	7.69	5.19	4.84	5.13	8.00	3.23	0.00	6.94	8.00	2.38	4.46	3.45	7.69	10.81	3.64	5.88	3.66	7.81	3.33	6.07	2.73	0.652694	1.000000
K	intron_retention	NDUFAF3	chr3	+	chr3:49059655-49059778				chr3:49059654-49059655;chr3:49059778-49059779		0.00	2.90	1.85	0.00	4.23	0.00	0.00	0.00	2.11	0.86	0.00	0.00	0.00	0.00	0.00	1.06	0.74	0.00	0.00	3.70	1.06	0.00	1.10	5.56	0.00	0.00	0.00	0.00	0.00	0.00	6.78	4.41	2.22	2.63	0.00	3.23	0.00	0.00	0.00	0.487591	1.000000
K	cassette	CHD3	chr17	+	chr17:7810807-7811211	chr17:7810807-7810918;chr17:7811021-7811211		chr17:7810919-7811020			36.00	33.33	41.51	NA	NA	NA	100.00	75.00	81.25	NA	62.50	72.73	82.35	NA	68.00	NA	75.00	NA	NA	41.67	47.06	NA	33.33	NA	36.84	45.45	46.00	NA	60.00	70.00	NA	26.67	30.77	41.67	38.10	43.48	36.84	43.56	6.72	0.685862	0.885445
K	intron_retention	CLIC1	chr6	-	chr6:31704128-31704259				chr6:31704127-31704128;chr6:31704259-31704260		97.81	90.12	96.58	97.17	97.33	97.26	95.56	96.66	97.16	96.53	97.54	97.44	95.09	98.12	96.24	94.84	96.62	97.24	94.12	92.38	95.31	98.22	97.33	96.93	100.00	98.14	96.99	97.69	97.97	98.79	95.14	93.48	93.10	97.73	96.72	97.56	94.61	97.23	2.63	0.158633	1.000000
K	cassette	TMEM11	chr17	-	chr17:21102154-21117403	chr17:21102154-21114248;chr17:21114541-21117403		chr17:21114249-21114540			30.00	41.67	31.25	NA	45.00	NA	44.44	41.18	45.83	24.39	35.00	22.73	33.33	42.11	46.43	29.09	18.60	29.41	NA	28.57	45.45	35.00	32.35	23.53	NA	NA	29.41	38.46	36.00	33.33	16.67	20.00	14.29	27.78	34.78	42.11	37.50	30.00	-7.50	0.841756	0.946975
K	intron_retention	PPIF	chr10	+	chr10:81112149-81113462				chr10:81112148-81112149;chr10:81113462-81113463		8.25	0.00	4.96	2.31	3.04	0.00	0.97	1.33	1.43	1.65	1.39	1.50	1.63	2.45	1.42	1.23	1.37	3.16	3.51	7.26	2.88	2.24	2.45	3.11	0.00	2.11	2.55	1.45	2.45	1.68	8.87	4.99	6.74	3.10	2.86	3.10	1.30	4.86	3.56	0.329422	1.000000
N	cassette	TRPV2	chr17	+	chr17:16327082-16330035	chr17:16327082-16329412;chr17:16329584-16330035		chr17:16329413-16329583			94.03	100.00	94.59	NA	88.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.97	100.00	NA	95.52	97.56	100.00	93.18	100.00	NA	97.89	96.67	100.00	100.00	96.88	94.34	94.29	100.00	94.12	96.67	96.59	100.00	96.70	-3.30	0.040833	0.504725
N	jcn_only_AD	AOAH	chr7	-	chr7:36634037-36637240;chr7:36634037-36634194;chr7:36634037-36647862	chr7:36634037-36655985		chr7:36634195-36637240;chr7:36637241-36647862;chr7:36647863-36655985	chr7:36637240-36637241;chr7:36647862-36647863;chr7:36655985-36655986		100.00	100.00	96.91	100.00	100.00	NA	100.00	97.47	98.35	100.00	100.00	100.00	100.00	94.59	96.40	100.00	100.00	100.00	94.74	100.00	100.00	96.61	100.00	98.06	100.00	91.18	96.75	100.00	100.00	100.00	100.00	94.44	93.10	95.15	96.83	97.89	100.00	98.73	-1.27	0.706471	0.847650
N	jcn_only_AD		chr9	-	chr9:32984856-32985972	chr9:32984856-32985968		chr9:32985969-32985972	chr9:32985972-32985973		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	TBCB	chr19	+	chr19:36612572-36616352;chr19:36613076-36616352;chr19:36612613-36616352	chr19:36612621-36616352		chr19:36612572-36612612;chr19:36612613-36612620;chr19:36612621-36613075	chr19:36612571-36612572;chr19:36612612-36612613;chr19:36612620-36612621		100.00	99.09	95.08	98.18	97.87	97.33	100.00	94.92	97.59	97.56	95.83	98.33	98.02	100.00	97.92	96.84	98.20	97.78	98.23	93.15	95.76	97.62	100.00	100.00	100.00	98.84	97.30	96.43	98.37	96.33	93.33	96.72	96.30	100.00	100.00	96.74	98.66	96.88	-1.78	0.233751	0.657607
K	cassette	HSF1	chr8	+	chr8:145533583-145535006	chr8:145533583-145534859;chr8:145534936-145535006		chr8:145534860-145534935			100.00	100.00	96.77	NA	100.00	NA	100.00	100.00	97.96	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	NA	100.00	94.44	100.00	96.77	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	96.88	96.97	94.87	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	EIF4G2	chr11	-	chr11:10821304-10821636;chr11:10821322-10821636;chr11:10821331-10821636	chr11:10821157-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		1.71	7.89	1.51	5.26	5.08	NA	1.52	2.51	1.88	1.68	2.30	1.99	1.64	2.27	3.06	2.27	2.92	2.97	20.00	4.92	10.20	2.81	3.48	2.17	NA	3.16	3.38	3.27	3.52	6.38	7.69	4.93	8.33	1.67	1.65	1.89	7.89	2.83	-5.05	0.290256	0.709013
N	alternative_donor		chr11	-	chr11:93463879-93464324;chr11:93463879-93464311	chr11:93463879-93464315		chr11:93464312-93464315;chr11:93464316-93464324	chr11:93464315-93464316;chr11:93464324-93464325		88.24	100.00	91.30	98.08	95.92	100.00	NA	NA	NA	100.00	93.33	NA	92.31	NA	92.31	95.00	93.33	100.00	98.51	94.44	97.56	90.24	92.11	89.19	100.00	91.67	95.24	95.45	93.33	88.89	91.89	90.91	97.56	95.00	90.32	92.31	98.51	91.78	-6.73	0.014927	0.253926
N	alternative_acceptor	CLASRP	chr19	+	chr19:45572507-45573201;chr19:45572507-45572893	chr19:45572507-45573279		chr19:45572894-45573201;chr19:45573202-45573279	chr19:45573201-45573202;chr19:45573279-45573280		95.56	97.03	93.98	94.90	95.74	96.26	100.00	100.00	90.48	100.00	100.00	100.00	95.24	100.00	96.55	100.00	94.44	100.00	97.06	95.95	95.78	92.86	94.59	98.11	97.51	90.91	93.48	88.24	89.13	92.31	97.10	96.07	98.18	95.92	98.48	94.06	97.28	96.53	-0.76	0.565835	0.831954
K	cassette	SLC7A7	chr14	-	chr14:23243326-23244652	chr14:23243326-23243562;chr14:23243713-23244652		chr14:23243563-23243712			82.63	83.64	80.80	75.00	77.05	67.57	97.54	97.72	97.66	93.98	97.28	94.44	98.13	96.03	94.82	96.03	94.68	97.96	89.83	85.44	89.33	84.69	82.50	80.17	100.00	92.69	87.23	91.34	92.82	92.45	88.94	88.83	86.49	86.26	87.97	89.64	93.69	90.81	-2.87	0.596295	0.848241
N	intron_retention		chr22	-	chr22:50967040-50968332				chr22:50967039-50967040;chr22:50968332-50968333		96.88	100.00	96.43	100.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.61	100.00	100.00	100.00	93.75	93.28	96.34	100.00	93.83	100.00	100.00	98.28	97.60	100.00	100.00	100.00	95.50	98.19	100.00	100.00	100.00	98.89	100.00	97.58	-2.42	0.846745	1.000000
K	jcn_only_AA	SRRT	chr7	+	chr7:100485765-100485898	chr7:100485765-100485877		chr7:100485878-100485898	chr7:100485898-100485899		97.67	100.00	100.00	97.35	97.69	98.60	91.84	100.00	100.00	100.00	96.30	95.83	100.00	100.00	100.00	93.88	96.83	100.00	94.59	96.25	96.69	98.48	95.10	97.06	95.20	100.00	98.10	96.61	97.73	95.92	97.69	96.67	94.26	95.24	95.56	96.30	94.90	98.84	3.95	0.123990	0.663989
K	alternative_donor	DBNL	chr7	+	chr7:44084420-44089823;chr7:44084466-44089823	chr7:44084442-44089823		chr7:44084420-44084441;chr7:44084442-44084465	chr7:44084419-44084420;chr7:44084441-44084442		0.00	2.33	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.84	0.00	0.00	0.00	0.00	0.54	0.00	0.00	9.09	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	6.67	0.00	0.00	0.00	1.17	0.00	-1.17	0.154739	0.563271
K	intron_retention	UBA7	chr3	-	chr3:49846898-49846974				chr3:49846897-49846898;chr3:49846974-49846975		18.97	45.45	45.45	NA	NA	NA	2.86	1.59	5.71	0.00	0.00	0.00	3.12	8.33	15.79	0.00	0.00	0.00	NA	21.82	6.67	NA	NA	26.67	NA	20.78	25.00	25.00	8.00	17.24	29.63	41.18	20.00	NA	NA	28.95	11.56	19.88	8.31	0.968555	1.000000
N	jcn_only_AD	STARD10	chr11	-	chr11:72470427-72492106;chr11:72470427-72492019;chr11:72470427-72491133	chr11:72470427-72492157		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		4.00	4.23	4.17	0.00	5.13	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	5.13	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	4.35	3.33	0.00	9.38	0.00	1.67	0.00	-1.67	0.456286	0.710370
N	jcn_only_AD	FMNL1	chr17	+	chr17:43306855-43307970;chr17:43307659-43307970;chr17:43302973-43307970;chr17:43307517-43307970	chr17:43299621-43307970		chr17:43299621-43302972;chr17:43302973-43306854;chr17:43306855-43307516;chr17:43307517-43307658	chr17:43299620-43299621;chr17:43302972-43302973;chr17:43306854-43306855;chr17:43307516-43307517		96.67	100.00	95.41	NA	100.00	NA	100.00	100.00	98.06	83.05	100.00	87.50	100.00	98.72	97.95	91.38	99.28	93.10	100.00	95.29	100.00	93.33	97.10	84.62	100.00	100.00	97.80	93.10	100.00	NA	95.00	97.12	NA	100.00	96.00	92.45	100.00	97.69	-2.31	0.049619	0.507362
N	cassette	CMC2	chr16	-	chr16:81010077-81040338;chr16:81015483-81040338	chr16:81015483-81030918,chr16:81010077-81030918;chr16:81031035-81040338		chr16:81030919-81031034			100.00	100.00	97.06	100.00	97.14	100.00	95.35	100.00	98.44	94.44	97.37	90.32	95.74	100.00	95.83	96.43	93.18	97.14	94.44	100.00	93.33	96.00	94.29	100.00	100.00	100.00	100.00	97.06	95.35	92.86	93.10	94.59	94.12	100.00	100.00	95.56	95.54	100.00	4.46	0.189165	0.709176
N	jcn_only_AA	PNPLA6	chr19	+	chr19:7621611-7622053	chr19:7621611-7621851		chr19:7621852-7622053	chr19:7622053-7622054		3.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	1.92	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.77	0.00	0.00	8.33	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.181072	0.663989
K	intron_retention		chr1	+	chr1:161179979-161180093				chr1:161179978-161179979;chr1:161180093-161180094		8.86	4.82	12.59	4.55	6.15	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.67	0.99	1.80	1.52	0.00	0.00	0.00	9.09	3.28	8.82	11.22	19.05	0.00	5.75	8.00	7.69	6.06	5.00	8.93	9.82	5.56	10.17	13.51	15.66	0.64	7.30	6.67	0.483468	1.000000
N	alternative_acceptor	NCL	chr2	-	chr2:232319979-232320111	chr2:232320000-232320111		chr2:232319979-232319999	chr2:232319978-232319979		4.23	0.60	1.87	0.42	0.41	0.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.32	6.15	1.05	1.22	0.83	0.00	0.00	0.00	2.20	0.00	0.40	0.44	4.41	3.25	1.29	0.65	0.00	0.74	0.16	2.12	1.96	0.125466	0.613739
K	coord_cassette	LST1	chr6	+	chr6:31555096-31556294	chr6:31555096-31555417;chr6:31555511-31555592;chr6:31555744-31556294		chr6:31555418-31555510;chr6:31555593-31555743			3.03	1.37	4.35	4.67	1.09	1.65	10.71	5.26	19.23	13.58	9.65	19.28	18.12	7.14	13.33	5.71	15.38	4.48	7.71	6.25	9.00	2.63	3.47	2.38	11.58	5.88	2.99	14.81	7.41	17.82	8.70	5.88	2.45	4.60	1.46	2.45	9.21	6.06	-3.15	0.364938	0.643829
N	alternative_acceptor	SGSM2	chr17	+	chr17:2282498-2282705;chr17:2282498-2283558	chr17:2282498-2282725		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		100.00	96.97	100.00	86.67	93.55	NA	100.00	91.67	100.00	NA	100.00	NA	94.44	100.00	92.59	NA	100.00	NA	94.12	100.00	100.00	100.00	93.48	100.00	100.00	100.00	95.35	92.86	97.30	100.00	100.00	100.00	93.75	100.00	96.43	100.00	95.70	100.00	4.30	0.285064	0.709013
N	alternative_first_exon	KIF25-AS1	chr6	-	chr6:24709140-24718767	chr6:24709140-24714545	chr6:24718768-24721064	chr6:24714546-24714668			100.00	100.00	100.00	100.00	100.00	91.67	100.00	99.65	99.25	100.00	100.00	100.00	99.53	99.58	99.30	99.29	100.00	99.23	100.00	99.07	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.83	-0.17	0.512552	0.650124
K	intron_retention	PCBP2	chr12	+	chr12:53861628-53862560				chr12:53861627-53861628;chr12:53862560-53862561		3.81	1.17	6.67	3.45	3.70	1.54	0.81	0.81	0.64	0.76	0.62	0.00	1.24	0.91	1.67	1.10	1.47	0.00	3.16	5.95	2.15	5.34	2.95	4.62	0.00	5.26	7.76	4.55	2.05	3.08	2.78	4.32	2.68	7.31	6.32	5.20	1.21	3.29	2.09	0.401138	1.000000
N	alternative_acceptor	LRP1	chr12	+	chr12:57569489-57569691	chr12:57569489-57569592		chr12:57569593-57569691	chr12:57569691-57569692		0.00	0.00	0.00	NA	NA	NA	0.00	0.98	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	NA	7.14	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.98	0.98	0.220554	0.671511
N	cassette	SLC3A2	chr11	+	chr11:62653081-62655802	chr11:62653081-62655606;chr11:62655691-62655802		chr11:62655607-62655690			99.53	100.00	99.78	98.50	99.35	100.00	99.49	100.00	100.00	98.66	98.68	94.00	100.00	100.00	100.00	99.15	100.00	98.28	100.00	100.00	100.00	98.75	99.09	100.00	100.00	100.00	100.00	99.68	99.60	99.13	99.63	99.68	100.00	98.88	99.47	99.22	100.00	100.00	0.00	0.665371	0.877602
N	jcn_only_AA	TNFSF12,TNFSF12-TNFSF13	chr17	+	chr17:7452630-7452790	chr17:7452630-7452787		chr17:7452788-7452790	chr17:7452790-7452791		9.52	0.00	0.00	NA	16.67	NA	11.76	0.00	8.33	0.00	8.93	0.00	5.26	9.68	7.69	10.00	16.67	0.00	10.00	15.38	NA	NA	9.09	NA	0.00	0.00	6.67	NA	8.33	NA	NA	NA	15.38	NA	0.00	0.00	7.63	9.52	1.89	0.970691	0.989156
K	intron_retention	PAF1	chr19	-	chr19:39879656-39879732				chr19:39879655-39879656;chr19:39879732-39879733		5.88	0.00	9.80	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.45	0.00	0.00	0.00	4.35	0.00	5.66	0.00	0.00	0.00	0.00	11.54	7.46	11.76	0.00	4.00	3.85	0.00	4.55	4.55	0.768729	1.000000
K	intron_retention		chr9	-	chr9:140006683-140007196				chr9:140006682-140006683;chr9:140007196-140007197		7.37	6.54	16.07	9.82	8.19	3.86	1.02	0.00	0.72	2.18	1.18	0.83	3.75	0.00	9.32	3.16	1.20	0.00	8.68	9.86	6.89	12.10	10.00	6.04	7.52	3.70	13.53	6.14	8.72	5.56	5.33	7.27	6.06	6.60	8.12	3.06	6.30	4.52	-1.78	0.693586	1.000000
N	jcn_only_AA		chr9	+	chr9:140001900-140001993;chr9:140001900-140001989	chr9:140001900-140001982		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		83.67	100.00	86.27	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.14	92.50	93.75	100.00	97.14	100.00	95.24	88.46	86.36	100.00	97.44	100.00	81.82	85.45	93.10	96.67	100.00	95.12	97.62	90.48	-7.14	0.167085	0.663989
N	alternative_acceptor	ATXN2L,CPNE2	chr16	+	chr16:28847444-28847769	chr16:28847444-28847646		chr16:28847647-28847769	chr16:28847769-28847770		90.00	100.00	94.87	85.71	95.45	61.54	82.35	85.71	78.95	68.18	56.52	40.00	72.73	85.71	83.33	72.00	64.00	53.85	94.12	83.33	91.67	85.71	92.59	83.33	100.00	90.00	100.00	100.00	90.48	88.89	100.00	93.75	100.00	94.74	95.83	87.50	97.06	87.85	-9.21	0.661217	0.877732
N	alternative_donor	CNDP2	chr18	+	chr18:72185876-72186183	chr18:72185951-72186183		chr18:72185876-72185950	chr18:72185875-72185876		1.20	0.00	1.35	0.00	0.00	0.00	0.00	0.51	0.00	0.00	0.00	0.78	0.00	0.30	0.97	0.44	0.70	0.00	0.00	0.82	1.56	1.16	1.10	1.16	16.67	0.84	1.94	1.59	1.42	0.87	2.19	0.91	0.00	1.50	1.42	2.25	0.00	0.83	0.83	0.546623	0.780071
K	jcn_only_AA	CYB561D2,XXcos-LUCA11.5	chr3	+	chr3:50388416-50388839	chr3:50388416-50388773		chr3:50388774-50388839	chr3:50388839-50388840		15.00	26.67	26.32	NA	22.22	NA	29.33	35.71	35.19	37.14	21.74	28.57	33.33	37.50	27.45	27.78	28.33	26.32	NA	22.73	23.53	NA	22.22	NA	NA	35.48	33.33	28.57	25.00	50.00	18.75	16.67	36.36	37.50	17.65	25.00	31.33	29.10	-2.23	0.420506	0.691465
K	cassette	ADD1	chr4	+	chr4:2927840-2929897	chr4:2927840-2928365;chr4:2928403-2929897		chr4:2928366-2928402			1.54	0.00	2.38	NA	0.00	NA	1.75	2.40	2.04	3.03	2.70	5.45	2.08	5.05	2.04	2.17	2.80	4.08	NA	1.64	0.00	2.56	1.39	0.00	0.00	3.66	1.39	0.00	1.85	0.00	2.86	1.61	0.00	1.67	1.39	1.10	0.00	2.63	2.63	0.017464	0.373030
K	cassette	NQO2	chr6	+	chr6:3012909-3017117	chr6:3012909-3015763;chr6:3015878-3017117		chr6:3015764-3015877			83.70	81.59	78.51	85.00	78.12	85.15	100.00	100.00	95.12	100.00	92.00	100.00	94.87	96.88	96.77	100.00	100.00	96.43	95.60	100.00	92.86	100.00	95.93	100.00	76.54	84.72	83.33	84.29	80.74	83.87	79.17	90.00	86.96	90.41	82.61	92.98	90.91	90.80	-0.11	0.784933	0.935398
N	jcn_only_AD	TRPM2	chr21	+	chr21:45838921-45843527;chr21:45842303-45843527;chr21:45838439-45843527	chr21:45838914-45843527					0.00	0.00	0.00	NA	0.00	NA	5.08	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	1.67	1.06	0.00	0.72	0.00	-0.72	0.114941	0.646283
N	alternative_acceptor	INPPL1,SLC39A13	chr11	+	chr11:47435238-47435853;chr11:47435238-47435975	chr11:47435238-47435835		chr11:47435836-47435853;chr11:47435854-47435975	chr11:47435853-47435854;chr11:47435975-47435976		8.86	1.64	9.09	11.54	10.20	9.52	0.00	1.64	0.00	0.00	1.05	0.00	0.00	2.63	2.38	1.33	1.11	0.00	6.45	6.58	4.35	10.64	16.90	14.81	20.00	5.26	11.11	7.14	10.20	8.00	9.62	13.58	6.06	8.33	9.62	5.48	3.85	5.92	2.07	0.983221	0.994790
K	intron_retention		chr17	-	chr17:73264274-73266194				chr17:73264273-73264274;chr17:73266194-73266195		0.00	14.58	10.00	NA	15.79	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	9.09	NA	6.06	NA	54.55	0.00	6.25	NA	0.00	NA	NA	11.11	16.67	0.00	0.00	0.00	11.84	0.00	-11.84	0.241485	1.000000
N	alternative_donor	MRPL52	chr14	+	chr14:23299154-23299258;chr14:23299158-23299258	chr14:23299150-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		90.48	86.05	91.11	92.00	87.88	82.14	96.00	NA	90.48	96.00	96.55	85.71	96.00	94.12	90.48	92.31	94.83	86.96	82.46	75.00	79.75	76.47	71.79	81.82	88.89	64.29	77.50	70.00	84.00	81.82	81.40	85.71	79.59	81.82	79.17	76.92	87.47	81.40	-6.07	0.284311	0.650093
K	cassette	PSMD13	chr11	+	chr11:237145-244040	chr11:237145-238997;chr11:239077-244040		chr11:238998-239076			93.88	100.00	95.83	NA	100.00	NA	98.18	100.00	100.00	100.00	100.00	100.00	100.00	98.08	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	NA	95.08	93.88	100.00	100.00	100.00	93.75	100.00	92.86	95.65	100.00	100.00	100.00	95.10	-4.90	0.233727	0.709176
K	cassette	CPSF3L	chr1	-	chr1:1249302-1250203	chr1:1249302-1249680;chr1:1249746-1250203		chr1:1249681-1249745			100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.00	92.86	85.71	NA	NA	100.00	91.30	100.00	100.00	100.00	100.00	100.00	83.33	88.89	86.36	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AD	CHIC2	chr4	-	chr4:54880287-54915205	chr4:54880287-54915121		chr4:54915122-54915205	chr4:54915205-54915206		94.44	100.00	95.65	97.14	96.30	95.83	100.00	91.67	97.50	95.95	100.00	100.00	96.55	92.86	97.83	93.33	95.35	95.00	100.00	97.44	100.00	100.00	95.45	97.30	100.00	100.00	100.00	94.12	100.00	95.35	92.68	96.97	100.00	98.15	93.75	95.65	100.00	93.65	-6.35	0.015971	0.296167
K	cassette	LTBR	chr12	+	chr12:6494546-6495512	chr12:6494546-6495231;chr12:6495329-6495512		chr12:6495232-6495328			100.00	86.49	97.78	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	NA	100.00	97.78	100.00	100.00	100.00	93.02	96.51	100.00	100.00	100.00	98.08	100.00	100.00	0.00	0.621443	0.862437
K	intron_retention	CALM1	chr14	+	chr14:90867734-90870800				chr14:90867733-90867734;chr14:90870800-90870801		87.14	82.00	86.36	86.61	95.06	89.82	89.25	87.65	87.76	92.86	94.70	93.45	87.80	85.71	85.14	89.33	93.57	93.24	68.63	83.28	85.00	89.89	88.50	88.96	100.00	86.24	86.36	87.95	87.78	89.04	85.71	87.69	82.69	91.16	86.05	89.52	85.25	85.97	0.73	0.525716	1.000000
K	cassette	POLG	chr15	-	chr15:89860768-89861771	chr15:89860768-89861169;chr15:89861269-89861771		chr15:89861170-89861268			12.12	0.00	14.29	11.43	6.98	9.52	2.22	0.00	17.65	11.11	3.45	0.00	6.52	6.25	10.71	10.53	6.90	9.09	6.90	12.50	3.57	14.29	14.81	10.00	0.00	16.00	12.90	14.71	13.51	11.11	25.00	27.27	9.52	14.00	11.90	10.53	4.37	12.31	7.94	0.081647	0.641134
N	intron_retention		chr7	+	chr7:23313234-23313672				chr7:23313233-23313234;chr7:23313672-23313673		21.74	48.28	15.38	20.00	30.30	72.73	12.70	12.50	17.86	10.00	9.09	7.84	12.20	6.67	15.38	12.68	10.68	10.29	53.85	12.50	40.00	12.90	13.97	10.53	NA	7.14	21.43	18.92	17.81	21.21	36.36	42.86	75.00	21.50	19.44	15.38	48.28	12.50	-35.78	0.401236	1.000000
K	intron_retention	MFF	chr2	+	chr2:228205097-228220392				chr2:228205096-228205097;chr2:228220392-228220393		2.86	9.09	6.12	7.69	3.23	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.70	0.00	0.00	0.00	NA	0.00	0.00	4.76	NA	3.12	7.69	0.00	0.00	6.52	6.67	4.00	5.88	0.00	2.22	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.618433	1.000000
K	intron_retention	RUSC2	chr9	+	chr9:35560849-35560956				chr9:35560848-35560849;chr9:35560956-35560957		44.44	54.55	42.11	35.00	44.00	NA	0.00	0.00	0.00	0.00	6.25	NA	NA	0.00	0.00	0.00	0.00	NA	50.00	28.57	28.00	38.46	48.57	45.45	16.67	24.24	28.21	18.75	29.17	0.00	41.67	42.22	45.45	28.57	47.83	31.58	45.45	26.41	-19.05	0.806668	1.000000
N	cassette	ATG16L2	chr11	+	chr11:72537635-72538232;chr11:72537289-72538232;chr11:72537289-72539403;chr11:72537635-72539403	chr11:72537635-72537747,chr11:72537289-72537747;chr11:72537869-72538232,chr11:72537869-72539403		chr11:72537748-72537868			100.00	85.00	94.44	NA	83.33	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	85.37	78.95	83.33	NA	86.05	NA	77.59	100.00	93.02	NA	100.00	NA	81.25	79.10	75.00	88.24	100.00	85.71	85.19	90.62	5.44	0.703201	0.892190
N	alternative_acceptor	VAC14	chr16	-	chr16:70721992-70726723;chr16:70725953-70726723;chr16:70721994-70726723;chr16:70721988-70726723	chr16:70725990-70726723		chr16:70721988-70721991;chr16:70721992-70721993;chr16:70721994-70725952;chr16:70725953-70725989	chr16:70721987-70721988;chr16:70721991-70721992;chr16:70721993-70721994;chr16:70725952-70725953		11.90	8.05	14.29	6.38	7.87	3.77	2.33	6.67	4.00	0.00	4.29	0.00	2.38	13.04	14.29	1.96	1.85	5.26	5.66	10.81	5.88	16.22	17.28	16.13	7.69	7.89	5.41	13.56	13.16	4.65	4.17	9.09	6.00	4.76	14.52	2.22	5.83	9.35	3.52	0.058273	0.570243
N	alternative_acceptor	MBTPS1	chr16	-	chr16:84094419-84096909	chr16:84095661-84096909		chr16:84094419-84095660	chr16:84094418-84094419		11.43	15.38	14.29	NA	14.29	NA	0.00	5.00	2.44	0.00	2.70	0.00	4.08	0.00	5.56	3.23	3.12	0.00	NA	6.90	0.00	15.00	7.32	14.29	NA	10.26	11.86	10.00	8.33	6.67	11.54	11.54	0.00	21.74	21.21	17.14	2.04	8.58	6.54	0.545961	0.822846
K	intron_retention		chr4	-	chr4:174254147-174254219				chr4:174254146-174254147;chr4:174254219-174254220		8.33	25.00	19.05	NA	10.00	NA	0.00	0.00	2.04	0.00	0.00	NA	1.08	0.00	1.92	0.00	3.66	NA	7.14	0.00	7.14	NA	0.00	NA	25.00	0.00	11.11	NA	7.14	NA	14.29	5.00	4.17	0.00	9.09	0.00	5.65	0.00	-5.65	0.556326	1.000000
K	intron_retention	SLC25A5	chrX	+	chrX:118604111-118604335				chrX:118604110-118604111;chrX:118604335-118604336		4.49	2.63	7.27	1.13	0.42	2.36	0.13	0.00	0.00	0.00	0.13	0.00	0.16	0.00	1.57	0.18	0.00	0.00	1.45	1.54	1.55	4.11	1.22	2.46	1.58	2.94	2.08	0.43	1.22	0.41	11.43	4.03	2.21	2.03	2.30	1.20	1.52	2.24	0.73	0.480403	1.000000
N	alternative_donor	PARVG	chr22	+	chr22:44582522-44583655;chr22:44582597-44583655	chr22:44581753-44583655		chr22:44581753-44582521;chr22:44582522-44582596	chr22:44581752-44581753;chr22:44582521-44582522		83.87	90.48	71.05	NA	96.97	NA	95.74	90.91	91.30	100.00	97.26	100.00	93.23	94.12	85.00	95.83	95.71	100.00	92.31	85.71	96.43	95.83	84.04	92.50	80.56	78.95	67.65	91.67	90.11	100.00	NA	83.78	95.56	88.89	86.17	90.38	92.77	85.71	-7.06	0.225453	0.597397
N	cassette	TATDN3	chr1	+	chr1:212977994-212988354;chr1:212981191-212988354	chr1:212981191-212985592,chr1:212977994-212985592;chr1:212985671-212988354		chr1:212985593-212985670			78.95	100.00	100.00	NA	NA	NA	100.00	100.00	94.74	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	94.44	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	91.67	90.91	NA	NA	100.00	NA	100.00	97.22	-2.78	0.144201	0.709176
K	intron_retention	TSR3	chr16	-	chr16:1400236-1400807				chr16:1400235-1400236;chr16:1400807-1400808		0.00	6.92	3.64	4.08	3.70	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	1.89	0.00	2.22	6.67	2.47	6.45	2.56	5.26	2.91	0.00	4.44	0.00	1.85	0.00	3.70	5.36	5.00	5.26	6.25	3.57	2.57	0.00	-2.57	0.764463	1.000000
K	cassette	HNRNPA2B1	chr7	-	chr7:26237353-26240191	chr7:26237353-26237450;chr7:26237487-26240191		chr7:26237451-26237486			30.89	20.59	26.87	42.11	28.38	NA	20.66	22.42	16.20	23.52	19.38	23.64	20.41	15.90	16.29	29.89	22.99	23.72	27.27	32.74	23.96	32.26	30.19	36.75	45.00	22.05	21.54	26.64	28.46	23.15	30.26	29.31	27.59	28.48	35.08	34.73	23.96	26.34	2.38	0.803224	0.936947
K	alternative_acceptor	SLC8B1	chr12	-	chr12:113745650-113748038	chr12:113745718-113748038		chr12:113745650-113745717	chr12:113745649-113745650		2.99	8.47	2.17	0.00	2.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	0.00	0.00	0.00	2.06	0.00	32.00	0.00	1.14	0.00	2.99	0.00	0.00	1.94	9.30	1.37	3.03	1.20	7.57	0.00	-7.57	0.123937	0.610671
K	intron_retention	MKNK2	chr19	-	chr19:2046283-2046365				chr19:2046282-2046283;chr19:2046365-2046366		6.17	1.82	3.68	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	3.03	0.00	1.59	0.00	5.00	0.00	0.00	NA	0.00	NA	10.00	4.93	6.98	2.63	0.00	2.70	0.91	1.47	0.56	0.965802	1.000000
N	alternative_acceptor	IL18	chr11	-	chr11:112014541-112019325	chr11:112015532-112019325		chr11:112014541-112015531	chr11:112014540-112014541		11.76	1.01	3.70	0.00	2.50	0.00	0.00	0.56	0.00	0.00	0.00	0.00	0.97	0.96	0.00	0.00	0.00	0.00	1.34	3.77	1.30	1.92	7.45	2.78	1.01	3.57	3.26	3.33	2.04	2.56	2.17	1.74	1.04	3.03	4.44	1.72	1.01	2.87	1.86	0.145034	0.649126
K	intron_retention	AC068580.6	chr11	+	chr11:1782425-1782548				chr11:1782424-1782425;chr11:1782548-1782549		54.39	47.69	100.00	NA	100.00	NA	100.00	100.00	45.92	100.00	100.00	100.00	100.00	100.00	100.00	48.41	100.00	100.00	34.48	48.54	100.00	47.62	100.00	100.00	54.76	56.52	100.00	100.00	100.00	100.00	46.62	45.00	43.75	100.00	62.35	100.00	51.22	55.45	4.23	0.979730	1.000000
K	alternative_acceptor	STK24	chr13	-	chr13:99105464-99109421	chr13:99108815-99109421		chr13:99105464-99108814	chr13:99105463-99105464		3.37	0.00	4.92	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.64	0.00	0.00	0.00	1.41	0.00	0.94	0.00	2.70	0.00	3.45	3.00	5.56	NA	4.17	5.45	2.08	1.67	0.83	3.92	5.08	0.00	5.77	7.69	4.97	0.00	3.04	3.04	0.028488	0.546324
N	jcn_only_AA		chr2	+	chr2:138762796-138764600;chr2:138762796-138771348;chr2:138762796-138763324	chr2:138762796-138771344		chr2:138763325-138764600;chr2:138764601-138771344;chr2:138771345-138771348	chr2:138764600-138764601;chr2:138771344-138771345;chr2:138771348-138771349		100.00	100.00	100.00	NA	100.00	NA	98.51	97.73	98.53	100.00	97.98	100.00	99.47	100.00	97.67	100.00	99.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.79	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.81	100.00	100.00	100.00	0.00	0.726608	0.877626
N	alternative_donor	APOBEC3G	chr22	+	chr22:39482461-39483015	chr22:39482573-39483015		chr22:39482461-39482572	chr22:39482460-39482461		97.09	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	95.96	100.00	NA	NA	100.00	NA	100.00	97.37	100.00	NA	95.89	96.08	95.89	86.67	100.00	100.00	94.94	100.00	97.16	-2.84	0.893647	0.977754
N	jcn_only_AD	HNRNPA2B1,IGFBP3	chr7	-	chr7:26230749-26231920;chr7:26230749-26231218;chr7:26230749-26232114	chr7:26230749-26231041		chr7:26231042-26231218;chr7:26231219-26231920;chr7:26231921-26232114	chr7:26231218-26231219;chr7:26231920-26231921;chr7:26232114-26232115		2.22	7.19	1.92	7.14	6.06	0.00	0.00	0.00	0.00	5.00	0.00	0.00	12.50	0.00	0.00	2.78	7.69	0.00	3.09	4.05	2.94	2.68	6.92	2.80	0.00	2.80	0.00	3.45	6.78	2.15	2.26	3.75	5.74	5.10	10.00	2.30	4.42	2.24	-2.17	0.213562	0.657607
N	alternative_donor	TNFRSF14	chr1	+	chr1:2493112-2493215;chr1:2492154-2493215	chr1:2493114-2493215		chr1:2492154-2493111;chr1:2493112-2493113	chr1:2492153-2492154;chr1:2493111-2493112		39.29	36.11	32.14	19.05	18.75	25.00	20.00	NA	20.00	18.18	26.67	NA	38.46	NA	35.29	19.05	33.33	NA	36.84	39.29	28.57	37.50	41.07	20.51	37.14	42.11	40.91	18.52	31.25	28.57	40.00	39.39	28.57	53.06	44.44	22.22	36.48	39.64	3.17	0.055187	0.415152
K	jcn_only_AD	ACOT2	chr14	+	chr14:74040295-74041611	chr14:74041112-74041611		chr14:74040295-74041111	chr14:74040294-74040295		0.00	0.00	NA	NA	0.00	NA	2.56	7.25	5.36	3.70	3.06	0.00	2.86	8.51	6.98	0.00	0.00	NA	0.00	12.50	4.17	NA	9.38	NA	NA	4.55	0.00	NA	4.35	NA	9.52	15.38	0.00	8.70	6.90	8.33	0.00	7.88	7.88	0.018143	0.320229
N	alternative_donor	WTAP	chr6	+	chr6:160173336-160174491;chr6:160169402-160174491;chr6:160172747-160174491;chr6:160169967-160174491	chr6:160171043-160174491		chr6:160169402-160169966;chr6:160169967-160171042;chr6:160171043-160172746;chr6:160172747-160173335	chr6:160169401-160169402;chr6:160169966-160169967;chr6:160171042-160171043;chr6:160172746-160172747		26.25	34.29	23.47	37.11	34.13	43.69	11.59	15.33	21.63	40.53	22.95	21.64	13.24	13.81	43.72	12.39	20.77	17.16	40.38	28.73	28.02	11.52	12.63	11.83	NA	10.63	12.48	16.99	17.61	24.10	9.57	25.12	40.00	23.67	22.20	16.84	34.29	14.57	-19.72	0.195344	0.570816
K	intron_retention	APOBEC3G	chr22	+	chr22:39483132-39483411				chr22:39483131-39483132;chr22:39483411-39483412		2.91	0.00	0.00	NA	0.00	2.42	0.00	0.58	0.90	0.00	0.00	0.00	0.00	0.00	1.94	0.00	NA	0.00	2.56	1.34	2.63	NA	0.00	0.00	0.00	1.49	2.44	9.09	0.00	3.18	1.58	1.74	0.00	0.00	6.25	3.48	0.00	1.42	1.42	0.369990	1.000000
N	jcn_only_AA	OS9	chr12	+	chr12:58109754-58109885;chr12:58109754-58109871	chr12:58109754-58109874		chr12:58109872-58109874;chr12:58109875-58109885	chr12:58109874-58109875;chr12:58109885-58109886		60.90	52.88	63.59	62.96	58.06	65.00	72.65	68.97	68.97	68.23	72.41	68.81	68.07	72.15	73.90	73.91	73.62	70.87	51.43	61.05	60.67	65.91	62.25	62.30	43.75	61.01	60.87	69.59	66.06	61.70	63.73	59.39	55.56	56.19	58.75	59.48	54.22	62.39	8.17	0.180243	0.663989
K	intron_retention	PKMYT1	chr16	-	chr16:3023066-3023138				chr16:3023065-3023066;chr16:3023138-3023139		91.30	91.84	NA	NA	90.48	NA	81.36	100.00	NA	36.36	67.35	NA	64.36	94.74	NA	29.17	55.93	NA	98.36	100.00	86.67	NA	91.43	NA	84.15	100.00	NA	NA	77.19	NA	NA	NA	100.00	NA	72.22	NA	88.00	100.00	12.00	0.272775	1.000000
N	alternative_acceptor	AP1B1	chr22	-	chr22:29727906-29730253;chr22:29727875-29730253;chr22:29728044-29730253	chr22:29729534-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		12.00	12.84	14.29	18.18	10.13	NA	3.50	1.79	2.17	5.48	3.02	6.94	6.13	3.39	1.89	9.41	4.83	7.59	10.26	9.09	4.17	20.00	14.21	24.00	14.04	6.78	7.27	13.33	7.36	16.13	10.81	13.21	7.69	22.81	17.39	21.05	8.97	7.94	-1.04	0.469199	0.771525
N	alternative_acceptor	MAN2B2	chr4	+	chr4:6619220-6621653	chr4:6619220-6620427		chr4:6620428-6621653	chr4:6621653-6621654		13.21	10.34	15.52	NA	NA	NA	5.77	4.76	2.63	2.70	5.88	2.33	5.36	2.78	2.94	5.56	3.92	3.03	NA	14.29	NA	5.88	12.12	8.00	NA	13.04	10.17	14.29	12.50	7.69	5.41	9.43	18.18	16.00	15.15	12.50	8.05	9.22	1.17	0.793510	0.923537
N	alternative_acceptor	M6PR	chr12	-	chr12:9093298-9095011;chr12:9093500-9095011;chr12:9093466-9095011	chr12:9094537-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		97.62	98.75	98.05	76.04	83.83	70.32	100.00	100.00	100.00	99.42	99.09	97.77	99.78	99.58	98.06	96.64	98.21	97.82	90.23	98.05	96.83	98.02	96.53	98.53	98.04	98.92	98.12	98.50	98.00	97.46	96.12	99.07	89.82	97.01	98.84	97.68	98.40	98.48	0.09	0.305318	0.709013
N	alternative_acceptor	PPP6R2	chr22	+	chr22:50878287-50878389	chr22:50878287-50878359		chr22:50878360-50878389	chr22:50878389-50878390		6.38	7.41	6.25	4.00	2.33	2.70	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.66	2.38	1.82	6.25	2.70	8.70	6.78	6.25	3.85	0.00	2.70	3.57	7.41	5.63	6.35	6.25	2.86	4.65	6.00	4.55	-1.45	0.935042	0.981619
K	alternative_first_exon	FKBP2	chr11	+	chr11:64008007-64009855,chr11:64009134-64009855,chr11:64008187-64009855,chr11:64009220-64009855,chr11:64009007-64009855,chr11:64009116-64009855,chr11:64009467-64009855;chr11:64009686-64009855;chr11:64008711-64009855	chr11:64008605-64009855	chr11:64009220-64009685;chr11:64008628-64008710	chr11:64008476-64008604			77.27	71.79	78.38	72.73	60.53	72.62	77.27	94.44	73.91	86.05	83.02	92.11	72.09	83.33	82.61	80.95	80.33	89.36	76.69	86.67	73.47	76.67	77.27	80.00	67.12	83.33	66.67	73.81	71.88	80.00	89.19	83.33	73.04	63.64	72.41	75.68	72.56	85.00	12.44	0.001777	0.018720
N	alternative_acceptor	C18orf8	chr18	+	chr18:21100278-21104093	chr18:21100278-21101364		chr18:21101365-21104093	chr18:21104093-21104094		22.45	69.23	15.22	82.76	40.74	100.00	11.11	6.06	3.03	11.90	17.65	9.52	5.88	2.63	3.12	5.56	4.00	5.56	73.33	15.69	35.29	44.83	36.67	26.47	100.00	12.77	17.14	42.86	36.84	18.18	31.71	13.64	75.00	44.19	23.33	26.79	71.28	14.23	-57.05	0.047857	0.570243
K	alternative_donor	CUTA	chr6	-	chr6:33384920-33385027	chr6:33384920-33385023		chr6:33385024-33385027	chr6:33385027-33385028		0.00	0.00	0.00	0.00	0.68	0.00	0.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00	0.00	0.00	6.06	0.00	0.59	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.408705	0.673823
K	alternative_donor	AURKAIP1	chr1	-	chr1:1310171-1310533;chr1:1310171-1310454	chr1:1310171-1310376		chr1:1310377-1310454;chr1:1310455-1310533	chr1:1310454-1310455;chr1:1310533-1310534		20.51	24.66	20.41	28.57	25.49	28.57	25.58	27.27	21.05	28.95	20.93	22.73	19.72	13.79	20.00	27.69	20.83	16.67	20.51	19.15	19.79	26.92	24.32	35.71	30.43	23.53	20.00	26.32	27.27	25.00	31.91	22.22	22.06	31.58	16.67	20.59	23.36	22.02	-1.34	0.720618	0.885082
K	cassette	BANP	chr16	+	chr16:88071618-88105674	chr16:88071618-88098872;chr16:88098939-88105674		chr16:88098873-88098938			12.50	30.00	36.36	41.67	35.71	54.55	NA	50.00	66.67	51.85	42.86	64.71	36.36	42.86	NA	55.36	38.46	57.14	45.45	47.37	33.33	50.00	30.00	52.38	25.00	36.67	28.57	57.14	48.57	58.33	26.83	30.43	25.00	46.15	42.11	60.61	30.00	39.77	9.77	0.611986	0.855635
N	alternative_acceptor	EPB41L5,UGP2	chr2	+	chr2:64117320-64118224;chr2:64117320-64118253	chr2:64117320-64118217		chr2:64118218-64118224;chr2:64118225-64118253	chr2:64118224-64118225;chr2:64118253-64118254		0.00	0.00	0.40	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.61	0.22	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.397321	0.714161
N	cassette	CCM2	chr7	+	chr7:45039963-45103516;chr7:45067397-45103516;chr7:45039963-45108041;chr7:45039457-45103516	chr7:45039457-45077851,chr7:45067397-45077851,chr7:45039963-45077851;chr7:45078026-45108041,chr7:45078026-45103516		chr7:45077852-45078025			80.36	81.48	83.33	82.35	87.50	NA	82.35	91.07	88.89	89.36	86.27	91.30	89.29	90.91	88.89	85.00	87.80	86.96	90.00	85.71	85.37	89.19	88.71	84.75	NA	82.67	87.65	92.11	90.91	86.79	80.85	84.21	76.92	92.68	94.74	80.74	82.35	84.19	1.84	0.702452	0.891910
K	intron_retention		chr16	+	chr16:67916910-67917017				chr16:67916909-67916910;chr16:67917017-67917018		85.00	92.31	85.19	90.00	94.34	94.74	93.33	90.91	85.71	100.00	95.24	NA	85.71	90.00	85.71	78.95	82.61	NA	93.10	69.23	90.91	85.71	93.02	91.67	94.12	78.57	88.24	100.00	100.00	90.91	95.00	88.89	93.10	92.86	87.50	92.31	93.10	87.50	-5.60	0.280471	1.000000
N	alternative_donor		chr17	-	chr17:62964500-62967040;chr17:62964500-62968435	chr17:62964500-62968651		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		80.95	98.59	86.67	93.10	96.43	98.33	100.00	100.00	100.00	NA	90.00	NA	92.00	90.00	84.62	90.00	90.91	NA	94.64	81.82	91.30	85.71	91.89	100.00	95.95	92.31	90.91	100.00	100.00	100.00	89.29	83.67	94.34	84.09	88.24	87.50	95.30	89.65	-5.65	0.065922	0.440060
K	intron_retention	HDAC10,MAPK12	chr22	-	chr22:50684806-50685107				chr22:50684805-50684806;chr22:50685107-50685108		0.00	1.80	6.90	5.88	6.98	3.12	0.00	NA	NA	NA	0.00	0.00	0.00	NA	4.17	0.00	0.00	0.00	4.23	3.33	5.08	10.00	7.89	0.00	10.53	3.57	11.43	0.00	6.67	7.14	0.00	5.00	7.69	6.67	8.70	3.45	3.02	1.67	-1.35	0.683888	1.000000
N	cassette	TYK2	chr19	-	chr19:10461645-10463601;chr19:10461645-10463109	chr19:10461645-10461727;chr19:10461839-10463109,chr19:10461839-10463601		chr19:10461728-10461838			94.74	88.79	95.51	100.00	93.33	93.75	100.00	95.24	100.00	100.00	100.00	NA	100.00	90.48	100.00	100.00	100.00	NA	94.81	95.35	95.96	88.89	95.16	100.00	91.55	100.00	100.00	100.00	100.00	96.55	90.70	96.67	93.33	96.88	94.00	94.74	94.07	94.99	0.92	0.891620	0.967502
N	cassette	MFSD7	chr4	-	chr4:679701-680320;chr4:678646-680320;chr4:667191-680320	chr4:667191-679877,chr4:678646-679877,chr4:679701-679877;chr4:680092-680320		chr4:679878-680091			40.00	10.87	26.67	8.70	8.70	2.27	82.93	78.95	58.82	69.70	80.00	76.92	80.00	46.67	60.00	82.76	81.48	73.33	4.76	38.89	33.33	28.57	24.00	46.15	3.17	34.78	45.45	42.11	40.91	45.45	27.27	36.84	3.75	27.59	18.75	33.33	7.81	39.45	31.63	0.468761	0.766608
K	alternative_donor	LRRFIP1	chr2	+	chr2:238668849-238678585	chr2:238678462-238678585		chr2:238668849-238678461	chr2:238668848-238668849		97.92	100.00	100.00	100.00	100.00	100.00	98.11	98.70	100.00	100.00	100.00	100.00	94.55	100.00	100.00	96.15	94.20	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	100.00	100.00	100.00	0.00	0.520524	0.770747
N	alternative_acceptor	AP1B1	chr22	-	chr22:29727875-29730253;chr22:29728044-29730253;chr22:29729534-29730253	chr22:29727906-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		84.00	83.49	83.67	81.82	86.08	NA	95.80	98.21	97.83	93.15	94.97	93.06	93.10	94.92	94.34	89.41	93.96	91.14	87.18	90.91	95.83	75.00	83.61	70.00	77.19	93.22	89.09	80.00	89.57	83.87	86.49	83.02	90.38	75.44	80.87	75.79	88.78	92.06	3.28	0.353235	0.709013
K	intron_retention	ADCY7	chr16	+	chr16:50326737-50327264				chr16:50326736-50326737;chr16:50327264-50327265		16.13	14.29	46.15	NA	NA	NA	0.00	2.26	0.00	0.00	1.37	0.00	0.78	0.76	0.00	0.00	1.35	0.00	NA	17.24	NA	NA	17.39	6.25	0.00	13.04	NA	NA	7.69	0.00	NA	30.00	NA	13.33	19.23	14.71	0.39	13.04	12.65	0.454829	1.000000
K	intron_retention	CRELD1	chr3	+	chr3:9984857-9985064				chr3:9984856-9984857;chr3:9985064-9985065		18.75	21.74	29.63	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	3.57	0.00	NA	NA	8.82	NA	21.43	NA	NA	0.00	17.24	8.33	9.09	10.00	12.50	16.67	9.09	10.00	NA	NA	4.54	0.00	-4.54	0.981766	1.000000
K	intron_retention	NDUFC1	chr4	-	chr4:140217115-140223569				chr4:140217114-140217115;chr4:140223569-140223570		0.00	0.00	0.00	NA	NA	4.88	0.00	0.00	0.00	6.25	0.00	1.61	0.00	2.50	3.57	0.00	0.00	6.52	0.00	3.70	0.00	0.00	0.00	12.77	0.00	3.45	0.00	6.25	9.09	3.12	0.00	0.00	0.00	9.09	9.09	3.57	0.00	1.25	1.25	0.474652	1.000000
N	alternative_acceptor	ZNF276	chr16	+	chr16:89804314-89805599;chr16:89804314-89804414;chr16:89804314-89804383	chr16:89804314-89804405		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6.25	9.52	0.00	0.00	0.00	0.00	7.14	5.56	0.00	0.00	0.00	0.00	0.00	0.00	5.00	16.67	0.00	0.00	5.62	2.78	-2.85	0.780033	0.917646
K	alternative_acceptor	SMG7	chr1	+	chr1:183520326-183522111	chr1:183520326-183520952		chr1:183520953-183522111	chr1:183522111-183522112		96.55	100.00	100.00	90.91	NA	100.00	96.30	100.00	100.00	100.00	100.00	100.00	92.31	100.00	97.50	98.48	100.00	96.83	NA	100.00	NA	95.83	100.00	100.00	100.00	100.00	100.00	95.83	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.344324	0.709013
N	jcn_only_AA		chr6	+	chr6:160197305-160198354	chr6:160197305-160198333		chr6:160198334-160198354	chr6:160198354-160198355		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.00	97.44	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177808	0.663989
N	cassette	TMED5	chr1	-	chr1:93620446-93621856;chr1:93620446-93621973	chr1:93620446-93621592;chr1:93621642-93621856,chr1:93621642-93621973		chr1:93621593-93621641			7.53	11.86	10.46	10.00	7.14	7.69	2.65	4.05	2.55	7.93	4.81	6.57	2.22	5.29	3.33	5.76	6.61	6.29	5.26	8.41	11.86	8.82	5.00	10.91	0.00	5.34	7.89	9.52	4.44	7.41	9.91	10.66	4.26	7.38	7.08	8.89	3.46	6.44	2.98	0.247018	0.709176
K	jcn_only_AA	EMC1	chr1	-	chr1:19546164-19547257	chr1:19546193-19547257		chr1:19546164-19546192	chr1:19546163-19546164		100.00	100.00	100.00	100.00	100.00	NA	94.12	NA	100.00	96.43	93.94	100.00	91.49	NA	96.88	95.12	100.00	97.37	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	91.30	100.00	93.33	92.86	96.88	100.00	100.00	0.00	0.183487	0.663989
K	intron_retention		chr16	+	chr16:31050973-31051043				chr16:31050972-31050973;chr16:31051043-31051044		11.83	12.66	16.30	11.63	9.85	7.88	0.00	0.95	0.00	1.89	1.83	1.23	2.15	1.12	3.74	1.93	2.99	0.00	9.97	12.42	9.52	12.40	12.50	9.13	7.85	9.15	13.18	5.88	5.80	4.62	24.43	22.66	13.39	9.81	9.26	7.94	8.91	10.49	1.58	0.809785	1.000000
N	alternative_acceptor	BST2	chr19	-	chr19:17514136-17514488	chr19:17514167-17514488		chr19:17514136-17514166	chr19:17514135-17514136		0.60	0.75	1.03	0.80	0.45	0.72	4.42	4.67	5.86	4.66	6.45	4.19	0.14	0.14	0.18	0.35	0.00	0.00	0.44	0.40	0.36	1.32	0.51	1.13	0.73	0.38	0.65	1.08	0.70	0.74	0.62	0.80	0.41	0.96	0.00	0.96	0.58	0.50	-0.08	0.989309	0.995608
K	jcn_only_AA	DPP9	chr19	-	chr19:4700286-4702038	chr19:4700290-4702038		chr19:4700286-4700289	chr19:4700285-4700286		96.30	100.00	95.38	NA	90.91	NA	94.55	100.00	98.28	100.00	98.08	100.00	97.14	97.37	98.11	93.85	94.12	100.00	NA	95.83	93.75	100.00	96.00	93.33	100.00	95.65	97.50	94.12	96.77	95.45	100.00	93.94	100.00	94.87	97.92	100.00	100.00	96.84	-3.16	0.569627	0.796382
K	intron_retention	RP11-867G23.4	chr11	-	chr11:66044515-66044770				chr11:66044514-66044515;chr11:66044770-66044771		95.06	97.41	100.00	97.02	96.20	97.12	95.76	96.27	97.54	98.56	98.63	98.40	96.30	97.19	95.58	95.00	96.75	96.97	96.79	98.31	98.05	96.58	96.53	95.90	100.00	100.00	96.20	96.47	96.05	96.64	96.63	97.24	97.64	97.13	97.16	96.39	97.10	96.91	-0.19	0.879416	1.000000
K	intron_retention	PPM1M	chr3	+	chr3:52282717-52282971				chr3:52282716-52282717;chr3:52282971-52282972		10.53	0.00	13.04	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	12.12	10.00	NA	12.00	NA	18.75	0.00	8.11	6.67	5.00	NA	NA	13.04	7.69	0.00	9.09	NA	0.00	0.00	0.00	0.737956	1.000000
K	intron_retention		chr6	-	chr6:34215270-34215457				chr6:34215269-34215270;chr6:34215457-34215458		10.34	0.00	4.55	NA	3.33	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.63	NA	5.13	NA	0.00	6.90	0.00	0.00	0.00	0.00	6.90	0.00	2.70	10.00	4.17	9.09	0.00	3.45	3.45	0.307546	1.000000
N	cassette	MTIF2	chr2	-	chr2:55463957-55467146	chr2:55463957-55464423;chr2:55464565-55467146		chr2:55464424-55464564			100.00	92.31	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr6	-	chr6:33271767-33271904				chr6:33271766-33271767;chr6:33271904-33271905		8.99	0.00	7.69	0.00	13.04	0.00	0.00	0.46	0.97	1.34	0.84	0.64	0.00	1.01	3.01	1.06	0.88	0.78	0.00	8.00	3.90	4.76	7.50	10.61	0.00	3.23	4.26	3.23	3.12	4.62	9.86	9.02	5.00	11.54	11.29	12.80	0.00	5.62	5.62	0.324796	1.000000
N	alternative_donor	TMEM176A	chr7	+	chr7:150501808-150501914;chr7:150501574-150501914	chr7:150501561-150501914		chr7:150501561-150501573;chr7:150501574-150501807	chr7:150501560-150501561;chr7:150501573-150501574		93.04	87.50	93.41	100.00	95.83	95.65	95.30	95.55	94.27	90.48	96.23	94.83	96.24	95.52	93.22	94.64	95.61	94.92	95.52	93.74	94.99	93.63	95.06	95.83	96.10	94.70	95.26	96.19	96.67	95.81	94.70	95.14	95.99	95.95	94.38	96.33	95.75	94.70	-1.05	0.947450	0.984606
K	intron_retention	CYP27A1	chr2	+	chr2:219678911-219679102				chr2:219678910-219678911;chr2:219679102-219679103		4.60	9.20	5.33	4.11	3.35	0.00	0.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.68	3.76	2.46	4.20	4.32	0.00	6.31	2.78	5.21	3.16	2.98	0.00	5.22	5.47	6.52	5.37	6.09	1.40	5.99	3.27	-2.72	0.633065	1.000000
N	cassette	MLH1	chr3	+	chr3:37083823-37090007	chr3:37083823-37089009;chr3:37089175-37090007		chr3:37089010-37089174			95.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	88.24	100.00	100.00	100.00	92.00	100.00	NA	100.00	100.00	100.00	95.65	100.00	100.00	93.33	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.569342	0.829613
N	cassette	DOK2	chr8	-	chr8:21768369-21771049;chr8:21768369-21769739	chr8:21768369-21769411;chr8:21769500-21769739,chr8:21769500-21771049		chr8:21769412-21769499			62.16	67.57	62.07	NA	59.70	NA	81.25	87.50	NA	NA	83.51	NA	92.71	81.82	NA	NA	89.52	NA	67.50	77.78	NA	NA	58.77	NA	78.72	NA	74.19	NA	74.80	NA	NA	55.00	66.67	NA	73.91	NA	73.14	79.80	6.66	0.826266	0.942251
K	alternative_acceptor	SRRT	chr7	+	chr7:100485765-100485898	chr7:100485765-100485877		chr7:100485878-100485898	chr7:100485898-100485899		95.92	100.00	100.00	95.08	95.96	97.56	85.19	100.00	100.00	100.00	93.33	91.67	100.00	100.00	100.00	89.29	93.94	100.00	90.74	93.02	94.19	97.22	91.53	95.24	92.68	100.00	96.72	93.94	96.08	92.86	95.89	94.12	90.21	92.11	92.00	93.18	91.71	97.96	6.25	0.147741	0.651394
K	intron_retention	IFT43	chr14	+	chr14:76549633-76549800				chr14:76549632-76549633;chr14:76549800-76549801		4.76	0.00	0.00	0.00	3.23	3.23	NA	0.00	4.17	NA	0.00	NA	7.69	NA	0.00	NA	0.00	NA	5.77	0.00	1.85	NA	4.35	NA	0.00	0.00	8.57	NA	9.09	4.55	0.00	0.00	7.89	NA	0.00	8.33	5.77	0.00	-5.77	0.414471	1.000000
K	intron_retention	SET	chr9	+	chr9:131456322-131456919				chr9:131456321-131456322;chr9:131456919-131456920		5.00	0.00	1.69	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	1.97	0.00	0.00	0.00	0.00	0.00	0.58	0.58	0.416085	1.000000
K	alternative_last_exon	HNRNPUL2,HNRNPUL2-BSCL2	chr11	-	chr11:62482846-62482971;chr11:62474797-62482971	chr11:62482852-62482971	chr11:62474581-62474796	chr11:62480102-62482851			94.23	99.03	93.06	100.00	95.83	100.00	100.00	97.22	100.00	97.67	100.00	100.00	98.67	96.43	100.00	100.00	97.01	90.91	96.77	90.24	100.00	90.91	96.47	96.00	100.00	95.12	94.92	100.00	100.00	95.00	93.18	92.19	95.65	100.00	96.97	90.57	98.85	94.68	-4.17	0.011740	0.161746
N	cassette	EWSR1	chr22	+	chr22:29684776-29688125;chr22:29683124-29688125	chr22:29683124-29687553,chr22:29684776-29687553;chr22:29687589-29688125		chr22:29687554-29687588			87.84	100.00	89.04	100.00	98.11	100.00	100.00	93.55	93.62	98.25	94.37	100.00	100.00	94.55	92.31	98.06	97.47	94.12	92.86	96.20	92.68	100.00	95.12	96.30	100.00	91.18	100.00	100.00	97.18	95.45	89.04	83.13	86.96	95.83	96.61	94.34	100.00	92.37	-7.63	0.118697	0.709176
K	cassette	ZNF428	chr19	-	chr19:44112260-44118380	chr19:44112260-44112656;chr19:44112756-44118380		chr19:44112657-44112755			0.00	0.00	0.00	2.94	1.12	0.00	0.00	0.00	0.00	0.00	1.64	0.00	1.22	5.00	3.70	2.27	1.49	0.00	0.00	0.00	1.82	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.492300	0.776514
N	alternative_donor	ZSWIM8	chr10	+	chr10:75556773-75556870	chr10:75556778-75556870		chr10:75556773-75556777	chr10:75556772-75556773		5.00	28.57	10.00	NA	NA	NA	0.00	8.33	3.85	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	NA	NA	14.81	NA	8.33	13.04	12.50	30.00	4.35	13.89	NA	NA	NA	7.14	13.89	NA	12.50	5.56	14.81	14.29	6.07	-8.21	0.417071	0.678647
K	intron_retention		chr19	+	chr19:50363594-50363870				chr19:50363593-50363594;chr19:50363870-50363871		10.42	7.09	19.15	6.15	6.62	4.81	7.41	NA	9.09	6.67	11.11	10.00	6.25	0.00	13.04	11.76	11.76	0.00	5.05	13.51	2.52	15.79	12.07	8.33	8.05	8.70	13.56	12.50	9.52	8.33	13.89	16.00	7.22	21.43	26.32	18.75	7.15	10.42	3.27	0.975940	1.000000
K	alternative_acceptor	AD000671.6,IGFLR1	chr19	-	chr19:36230990-36231280;chr19:36230671-36231280	chr19:36230988-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		11.63	0.92	1.79	16.67	2.31	6.98	17.02	16.67	17.54	12.82	13.64	17.07	14.29	18.75	16.67	2.56	10.34	16.98	10.96	10.81	1.92	3.85	16.19	3.03	15.03	26.32	12.50	26.79	28.86	14.81	15.91	15.69	25.37	14.00	11.43	17.11	14.66	16.29	1.63	0.508125	0.798167
K	jcn_only_AA	CCAR2	chr8	+	chr8:22475078-22475211	chr8:22475078-22475208		chr8:22475209-22475211	chr8:22475211-22475212		95.00	100.00	91.89	NA	97.67	100.00	96.88	93.88	90.91	97.67	93.62	100.00	94.59	91.67	95.74	88.75	92.42	85.71	88.89	96.49	100.00	94.44	91.38	97.06	100.00	92.68	89.83	97.22	97.96	94.74	92.16	97.33	100.00	95.83	98.44	94.74	98.44	93.28	-5.16	0.161967	0.663989
K	jcn_only_AA	SF3B2	chr11	+	chr11:65824427-65824739	chr11:65824427-65824736		chr11:65824737-65824739	chr11:65824739-65824740		92.54	100.00	89.66	100.00	96.30	NA	90.91	90.74	88.89	87.50	89.55	85.42	93.67	96.61	90.32	87.32	91.58	90.20	NA	96.49	91.30	81.82	87.50	91.30	100.00	93.75	93.67	90.91	82.50	84.09	90.00	90.80	100.00	89.80	92.42	88.64	100.00	93.15	-6.85	0.160077	0.663989
N	alternative_acceptor	ROCK1	chr18	-	chr18:18529280-18533538	chr18:18531349-18533538		chr18:18529280-18531348	chr18:18529279-18529280		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	92.31	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.619342	0.854460
N	jcn_only_AA	PPM1M	chr3	+	chr3:52283339-52283660;chr3:52283339-52283671	chr3:52283339-52283685		chr3:52283661-52283671;chr3:52283672-52283685	chr3:52283671-52283672;chr3:52283685-52283686		90.00	100.00	92.86	NA	94.20	NA	91.87	94.87	97.78	90.48	91.43	100.00	95.41	91.67	100.00	100.00	94.29	NA	92.86	84.00	91.30	NA	92.86	NA	NA	100.00	100.00	94.12	89.25	NA	100.00	91.43	95.00	100.00	97.96	NA	95.00	93.27	-1.73	0.595256	0.812401
N	alternative_acceptor	EDEM2	chr20	-	chr20:33703762-33706400;chr20:33703737-33706400	chr20:33705657-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		3.45	1.23	4.88	0.00	1.43	0.00	0.00	1.54	0.00	0.00	0.00	0.00	1.89	0.00	2.56	0.00	0.00	0.00	1.89	2.27	1.00	4.00	2.27	4.55	2.27	2.15	2.47	5.88	3.33	2.56	2.08	2.94	2.41	1.89	3.77	3.23	1.89	2.12	0.23	0.621051	0.854460
K	intron_retention	MIA3	chr1	+	chr1:222835675-222837339				chr1:222835674-222835675;chr1:222837339-222837340		4.76	0.00	4.08	NA	9.09	NA	0.00	1.69	0.00	0.00	0.00	0.00	7.41	2.63	2.78	18.75	5.26	0.00	0.00	4.08	0.00	8.33	8.33	10.00	0.00	12.50	5.88	16.67	13.33	5.00	2.22	5.08	NA	18.18	0.00	8.33	0.00	3.35	3.35	0.411084	1.000000
K	jcn_only_AA	PSMA3	chr14	+	chr14:58724717-58727665;chr14:58724717-58727676	chr14:58724717-58727686		chr14:58727666-58727676;chr14:58727677-58727686	chr14:58727676-58727677;chr14:58727686-58727687		3.70	0.00	0.00	4.96	0.00	0.00	0.00	4.38	5.81	0.00	0.00	2.93	0.00	3.47	2.27	4.70	2.31	0.00	0.00	0.00	0.00	1.50	5.36	0.00	0.00	0.00	0.00	3.76	0.00	3.72	4.43	0.00	0.00	5.09	4.11	0.00	0.00	3.58	3.58	0.026506	0.636137
K	cassette	TNK2	chr3	-	chr3:195611905-195613847	chr3:195611905-195612283;chr3:195612415-195613847		chr3:195612284-195612414			6.56	0.00	0.00	NA	NA	NA	4.35	2.67	5.41	NA	0.00	NA	8.33	3.66	2.08	10.00	4.55	NA	NA	3.77	NA	NA	0.00	8.33	0.00	3.64	6.25	NA	0.00	NA	4.17	4.35	NA	NA	0.00	5.26	2.17	3.71	1.54	0.687363	0.885445
N	alternative_acceptor	ATF4	chr22	+	chr22:39916757-39917376;chr22:39916757-39917379;chr22:39916757-39917436;chr22:39916757-39917358	chr22:39916757-39917336		chr22:39917337-39917358;chr22:39917359-39917376;chr22:39917377-39917379;chr22:39917380-39917436	chr22:39917358-39917359;chr22:39917376-39917377;chr22:39917379-39917380;chr22:39917436-39917437		6.67	2.56	6.56	5.56	3.64	7.14	1.85	1.41	0.00	0.85	0.00	0.00	2.00	0.00	0.95	1.39	0.87	0.00	8.33	9.52	5.56	5.19	3.48	6.25	NA	4.26	4.55	3.12	4.35	3.28	9.43	6.76	8.33	5.43	4.88	5.10	2.56	5.46	2.90	0.794480	0.923537
K	intron_retention	EIF3G	chr19	-	chr19:10226497-10226642				chr19:10226496-10226497;chr19:10226642-10226643		0.00	1.07	0.00	0.00	1.21	0.00	7.63	3.08	0.00	0.00	9.15	0.00	1.52	0.00	0.00	0.00	4.27	0.00	0.30	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.93	0.69	0.45	1.23	2.94	0.00	0.76	0.00	-0.76	0.715171	1.000000
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4094497-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4095045-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		42.99	16.67	24.58	24.14	19.63	15.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.83	33.75	13.41	22.86	15.13	22.22	17.48	16.67	20.91	12.20	10.00	11.76	25.23	23.03	15.58	35.29	29.87	24.75	15.21	20.95	5.75	0.294781	0.709013
K	jcn_only_AA	GLTSCR2,WDR83	chr19	+	chr19:12781100-12781376;chr19:12781100-12783660	chr19:12781100-12781332					0.00	0.00	0.00	0.00	11.11	NA	0.00	NA	10.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	NA	10.00	0.00	6.25	0.00	3.23	NA	0.00	0.00	4.76	NA	0.00	NA	0.00	3.12	9.52	0.00	4.00	0.00	0.00	0.00	0.00	0.174849	0.663989
K	alternative_acceptor	KIAA0930	chr22	-	chr22:45601523-45601673	chr22:45601589-45601673		chr22:45601523-45601588	chr22:45601522-45601523		96.15	95.89	97.73	91.67	98.18	NA	95.86	93.75	95.24	97.86	98.77	97.87	96.15	97.75	96.55	96.03	98.58	96.77	89.66	97.30	96.15	96.59	96.71	100.00	100.00	97.22	94.59	93.83	97.48	100.00	97.92	94.74	100.00	96.32	94.95	94.32	96.02	97.26	1.24	0.808727	0.931261
N	jcn_only_AA	SIVA1	chr14	+	chr14:105223098-105225555;chr14:105223098-105225764	chr14:105223098-105225770		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	C5AR1	chr19	+	chr19:47813156-47823037	chr19:47813156-47819725;chr19:47819841-47823037		chr19:47819726-47819840			1.43	13.04	3.03	NA	3.45	NA	2.99	3.58	6.82	2.02	3.23	3.14	3.19	4.23	4.88	2.73	2.61	2.47	NA	0.98	0.00	1.50	2.07	0.64	NA	5.53	3.95	1.77	2.38	0.00	2.74	2.15	0.00	2.48	1.96	1.03	3.09	3.16	0.07	0.593040	0.846234
N	alternative_acceptor	LAIR1	chr19	-	chr19:54872817-54875901;chr19:54872851-54875901;chr19:54874623-54875901	chr19:54872814-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		28.66	16.13	24.56	27.27	21.88	NA	25.54	25.93	24.74	22.61	23.32	23.58	25.14	24.31	28.57	23.93	22.78	26.09	13.33	28.37	30.38	30.23	22.86	28.57	0.00	26.42	26.53	24.29	26.58	27.12	28.74	27.37	33.33	24.58	22.31	26.92	20.63	27.40	6.76	0.150126	0.653349
N	jcn_only_AA	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2420049;chr7:2419147-2419918;chr7:2419147-2419815	chr7:2419147-2419838		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		51.85	59.21	47.62	54.38	57.48	55.51	52.05	NA	50.00	42.31	48.33	50.00	58.44	60.00	65.71	62.81	52.31	47.37	54.70	50.00	54.89	62.71	52.94	56.67	50.84	80.00	75.00	55.05	50.76	59.23	47.22	57.45	49.68	55.17	66.04	57.83	53.38	51.85	-1.52	0.580337	0.804098
N	alternative_acceptor	H2AFZ	chr4	-	chr4:100870537-100870819;chr4:100870506-100870819	chr4:100870544-100870819		chr4:100870506-100870536;chr4:100870537-100870543	chr4:100870505-100870506;chr4:100870536-100870537		98.46	100.00	99.04	100.00	98.68	100.00	98.80	100.00	98.63	99.15	100.00	100.00	98.68	100.00	100.00	100.00	98.89	100.00	97.62	94.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	95.83	95.10	97.96	100.00	98.55	100.00	98.74	99.23	0.49	0.503942	0.794867
K	intron_retention	EXOC3	chr5	+	chr5:465961-466841				chr5:465960-465961;chr5:466841-466842		2.13	4.62	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.80	0.00	0.00	0.00	0.93	0.00	1.72	0.00	1.92	0.00	0.00	0.00	0.00	1.82	0.96	2.44	5.00	2.70	1.34	0.00	-1.34	0.429404	1.000000
N	alternative_acceptor	RBM6	chr3	+	chr3:50098981-50099394;chr3:50098981-50099111	chr3:50098981-50099068		chr3:50099069-50099111;chr3:50099112-50099394	chr3:50099111-50099112;chr3:50099394-50099395		18.75	37.14	23.81	28.57	23.08	NA	NA	NA	7.69	0.00	10.53	NA	15.79	15.38	22.73	20.00	7.69	NA	21.05	15.00	11.43	23.53	15.56	30.00	26.67	35.71	24.00	25.00	22.86	28.57	17.86	20.75	22.22	30.77	26.53	34.15	22.22	17.86	-4.36	0.466007	0.769277
N	alternative_acceptor	ABCF3	chr3	+	chr3:183907066-183907175	chr3:183907066-183907152		chr3:183907153-183907175	chr3:183907175-183907176		0.00	0.00	2.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.70	0.00	0.00	4.65	0.00	NA	0.00	6.06	0.00	0.00	0.00	0.00	3.85	0.00	0.00	4.76	4.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	BRD8	chr5	-	chr5:137492957-137495757	chr5:137492957-137495243;chr5:137495289-137495757		chr5:137495244-137495288			35.14	34.15	31.88	43.75	17.86	26.67	53.33	NA	58.33	NA	23.08	NA	42.31	NA	41.38	36.36	13.33	NA	31.25	34.48	35.85	NA	24.14	33.33	24.49	35.00	36.54	NA	29.41	21.43	34.00	26.04	23.08	26.32	26.92	36.00	32.70	34.74	2.04	0.981631	0.995216
K	cassette	MACF1	chr1	+	chr1:39945682-39950272	chr1:39945682-39946591;chr1:39946703-39950272		chr1:39946592-39946702			18.18	16.13	20.37	15.79	14.71	16.67	10.53	14.29	13.33	11.86	10.94	11.59	10.94	22.00	19.79	14.58	12.64	18.34	10.00	24.32	16.67	22.86	21.43	25.49	NA	23.46	22.00	15.62	12.50	19.66	18.75	19.40	18.75	21.21	22.86	23.19	10.94	20.38	9.44	0.017396	0.373030
N	cassette	PAK1	chr11	-	chr11:77034406-77043774;chr11:77034406-77047130	chr11:77034406-77036372;chr11:77036422-77047130,chr11:77036422-77043774		chr11:77036373-77036421			10.26	9.23	7.69	13.33	10.94	9.09	10.71	9.52	8.00	5.26	16.92	0.00	15.33	15.38	11.54	4.00	14.89	25.00	8.70	12.90	17.24	4.35	11.84	18.18	7.59	5.71	8.57	15.38	12.12	NA	9.09	4.44	6.35	8.20	9.01	8.06	8.96	9.89	0.93	0.668813	0.879614
N	alternative_acceptor	FBRS,PDXDC1	chr16	+	chr16:30679965-30680092	chr16:30679965-30680043		chr16:30680044-30680092	chr16:30680092-30680093		2.13	0.00	4.55	NA	0.00	NA	0.00	1.41	0.00	0.00	1.23	0.00	0.00	0.00	1.01	0.00	0.00	0.00	NA	4.44	3.70	9.30	7.69	6.06	0.00	3.45	6.42	0.00	3.45	8.33	5.71	5.84	14.29	3.80	7.14	5.00	0.00	2.79	2.79	0.999662	1.000000
N	jcn_only_AA		chr16	+	chr16:50338871-50339416	chr16:50338871-50339413		chr16:50339414-50339416	chr16:50339416-50339417		100.00	100.00	100.00	NA	92.31	100.00	100.00	99.09	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	96.30	92.86	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	C18orf8	chr18	+	chr18:21109263-21109598				chr18:21109262-21109263;chr18:21109598-21109599		13.73	0.00	14.04	6.67	5.00	0.00	23.08	19.44	3.70	38.64	34.62	15.00	4.17	12.82	0.00	23.33	27.78	5.88	0.00	15.79	8.33	36.00	15.91	17.65	NA	11.11	4.55	38.46	19.23	4.76	4.05	6.90	10.00	28.00	25.00	15.52	4.17	13.28	9.11	0.693443	1.000000
K	cassette	CRELD1	chr3	+	chr3:9985200-9986048	chr3:9985200-9985585;chr3:9985780-9986048		chr3:9985586-9985779			9.09	21.43	NA	NA	NA	NA	10.53	0.00	0.00	6.67	7.69	6.67	8.00	5.26	5.00	5.00	7.14	8.33	0.00	0.00	8.33	NA	9.09	NA	10.00	16.67	0.00	NA	7.69	0.00	9.09	5.00	0.00	NA	10.00	9.09	9.00	7.17	-1.83	0.702243	0.891910
N	jcn_only_AA	FMNL1	chr17	+	chr17:43319002-43319213;chr17:43319002-43319320;chr17:43319002-43319228;chr17:43319002-43319293;chr17:43319002-43319231	chr17:43319002-43319340		chr17:43319214-43319228;chr17:43319229-43319231;chr17:43319232-43319293;chr17:43319294-43319320;chr17:43319321-43319340	chr17:43319228-43319229;chr17:43319231-43319232;chr17:43319293-43319294;chr17:43319320-43319321;chr17:43319340-43319341		1.60	1.16	1.54	0.00	1.49	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	2.05	0.00	0.00	0.98	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	2.55	0.00	0.00	0.81	0.00	0.00	0.00	0.00	0.639523	0.838192
K	intron_retention	RSRP1	chr1	-	chr1:25568918-25569029				chr1:25568917-25568918;chr1:25569029-25569030		95.80	97.63	97.00	96.58	97.83	100.00	94.12	100.00	95.24	100.00	90.00	100.00	96.55	100.00	90.91	100.00	84.62	NA	95.45	94.83	94.95	100.00	99.37	97.03	97.62	97.86	97.64	98.53	100.00	97.92	96.81	94.61	97.28	97.71	97.52	97.83	96.91	97.34	0.42	0.496867	1.000000
N	jcn_only_AA		chr1	+	chr1:68151810-68152123;chr1:68151810-68152102	chr1:68151810-68152032		chr1:68152033-68152102;chr1:68152103-68152123	chr1:68152102-68152103;chr1:68152123-68152124		100.00	100.00	100.00	100.00	NA	100.00	100.00	98.85	98.95	100.00	NA	100.00	100.00	100.00	98.90	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	97.73	NA	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	cassette	NSMCE1	chr16	-	chr16:27236558-27238040	chr16:27236558-27237046;chr16:27237168-27238040		chr16:27237047-27237167			100.00	96.84	94.55	100.00	99.15	96.36	100.00	NA	100.00	100.00	100.00	100.00	96.72	NA	100.00	100.00	100.00	100.00	95.79	94.44	97.45	91.67	96.72	100.00	98.37	100.00	100.00	100.00	100.00	100.00	100.00	96.92	96.52	100.00	91.11	97.44	96.78	100.00	3.22	0.460535	0.758088
K	jcn_only_AA	LAIR1	chr19	-	chr19:54868576-54871628	chr19:54870233-54871628					38.81	16.30	37.11	39.47	18.92	54.17	6.23	18.23	12.54	16.67	14.41	27.75	9.71	13.25	17.70	16.48	15.48	25.00	54.29	33.59	38.33	25.76	17.34	25.53	22.22	30.14	24.70	14.29	12.27	21.11	54.78	43.33	44.07	24.65	15.66	27.68	19.26	31.87	12.61	0.562982	0.792873
N	alternative_acceptor	CTD-2547L16.1,IKBKB	chr8	+	chr8:42186733-42188431	chr8:42186733-42187733		chr8:42187734-42188431	chr8:42188431-42188432		7.14	8.57	8.70	NA	0.00	NA	0.00	0.00	0.00	0.00	3.12	NA	2.27	0.00	4.76	5.00	4.00	NA	0.00	0.00	0.00	6.67	3.33	3.70	0.00	6.67	2.94	4.55	4.17	0.00	0.00	3.33	0.00	4.00	3.12	3.70	0.00	0.00	0.00	0.811594	0.932964
K	intron_retention	AAMP	chr2	-	chr2:219131311-219131569				chr2:219131310-219131311;chr2:219131569-219131570		0.00	0.00	3.23	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	2.70	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.89	4.62	0.00	4.26	0.00	0.00	0.00	0.00	0.00	0.533149	1.000000
K	intron_retention	ANKH	chr5	-	chr5:14711420-14712982				chr5:14711419-14711420;chr5:14712982-14712983		13.79	0.74	25.00	0.00	0.39	0.00	0.83	5.88	18.18	0.00	0.44	3.23	1.78	9.09	NA	1.89	0.49	5.08	1.98	4.35	0.00	2.27	2.00	5.00	0.00	NA	18.75	0.00	0.37	0.00	NA	NA	0.00	1.45	0.00	9.68	0.78	7.48	6.70	0.357195	1.000000
N	cassette	SLC4A2	chr7	+	chr7:150771187-150771761;chr7:150771381-150771761	chr7:150771381-150771485,chr7:150771187-150771485;chr7:150771576-150771761		chr7:150771486-150771575			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	96.83	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.463188	0.759738
N	jcn_only_AD	ESRRA	chr11	+	chr11:64081521-64081710	chr11:64081540-64081710		chr11:64081521-64081539	chr11:64081520-64081521		86.67	86.36	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	91.67	100.00	100.00	100.00	NA	100.00	100.00	93.75	92.31	100.00	NA	100.00	100.00	87.50	100.00	100.00	NA	100.00	100.00	0.00	0.696019	0.845069
N	alternative_acceptor	SLC39A13	chr11	+	chr11:67816905-67817129	chr11:67816905-67817084		chr11:67817085-67817129	chr11:67817129-67817130		57.61	50.00	60.00	80.00	83.00	70.21	NA	66.67	NA	NA	NA	NA	NA	76.47	64.29	NA	NA	NA	66.67	60.00	65.79	79.31	86.15	76.92	68.89	67.80	63.46	75.00	81.36	73.33	56.52	58.11	60.56	74.29	68.42	72.41	63.62	63.34	-0.28	0.631563	0.859182
N	jcn_only_AD	CDK5RAP2	chr9	-	chr9:123165350-123165593;chr9:123165350-123165616;chr9:123165350-123166313	chr9:123165350-123165520		chr9:123165521-123165593;chr9:123165594-123165616;chr9:123165617-123166313	chr9:123165593-123165594;chr9:123165616-123165617;chr9:123166313-123166314		0.00	0.00	0.00	NA	5.00	NA	0.00	NA	0.00	8.33	0.00	NA	0.00	NA	NA	16.67	0.00	NA	0.00	0.00	9.52	NA	0.00	NA	0.00	0.00	0.00	0.00	3.23	NA	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	alternative_acceptor		chr7	+	chr7:131163437-131172441;chr7:131163437-131164911	chr7:131163437-131172365		chr7:131164912-131172365;chr7:131172366-131172441	chr7:131172365-131172366;chr7:131172441-131172442		100.00	66.67	76.47	100.00	87.50	72.73	84.21	81.48	100.00	88.89	95.24	91.67	100.00	100.00	91.67	92.31	95.00	NA	100.00	86.67	100.00	NA	85.71	NA	NA	91.30	80.00	100.00	81.25	94.12	85.19	90.91	88.24	69.57	100.00	90.48	88.24	88.98	0.75	0.685051	0.881289
N	cassette	AOAH	chr7	-	chr7:36580098-36589044	chr7:36580098-36588217;chr7:36588293-36589044		chr7:36588218-36588292			100.00	93.75	94.74	91.30	92.06	94.44	90.53	94.83	95.04	93.59	93.68	96.30	100.00	90.62	93.41	92.31	94.59	88.46	100.00	90.32	92.31	95.92	95.74	92.41	NA	89.80	93.90	100.00	91.07	94.64	84.21	84.95	83.33	90.11	89.01	92.62	93.75	90.47	-3.28	0.634352	0.867338
N	alternative_acceptor	HNRNPUL1	chr19	+	chr19:41810167-41811580;chr19:41810167-41811532;chr19:41810167-41811550	chr19:41810167-41811736		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		15.00	38.46	13.73	NA	20.83	NA	0.00	17.74	12.07	17.24	15.73	12.50	11.11	0.00	0.00	15.22	11.11	0.00	33.33	0.00	22.22	6.25	0.00	0.00	NA	15.79	0.00	0.00	16.28	7.14	14.71	16.67	41.67	0.00	0.00	11.90	33.33	14.86	-18.47	0.162234	0.660713
K	cassette	CKLF,CKLF-CMTM1	chr16	+	chr16:66586697-66597024;chr16:66586697-66599788	chr16:66586697-66592092;chr16:66592252-66597024,chr16:66592252-66599788		chr16:66592093-66592251			52.63	32.26	48.87	38.10	45.16	24.14	43.06	44.00	48.57	57.69	51.79	66.67	40.37	60.00	40.00	41.51	46.48	54.17	34.75	53.12	48.03	45.45	55.29	50.00	35.71	51.72	52.33	50.00	42.03	42.11	41.67	56.94	30.00	38.46	38.24	34.69	35.23	52.17	16.94	0.001953	0.147524
N	jcn_only_AA		chr19	+	chr19:39395761-39395860	chr19:39395761-39395841		chr19:39395842-39395860	chr19:39395860-39395861		100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.471324	0.730756
N	alternative_donor	ARHGEF1	chr19	+	chr19:42396748-42397344	chr19:42396921-42397344		chr19:42396748-42396920	chr19:42396747-42396748		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	94.74	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	cassette	NPL	chr1	+	chr1:182787825-182794669;chr1:182787825-182791249;chr1:182787825-182798737;chr1:182787825-182791177;chr1:182785942-182791249;chr1:182787825-182794915	chr1:182785942-182787947,chr1:182787825-182787947;chr1:182787995-182791249,chr1:182787995-182791177,chr1:182787995-182794915,chr1:182787995-182794669,chr1:182787995-182798737		chr1:182787948-182787994			89.96	89.60	93.33	93.24	91.52	90.41	91.50	91.45	89.53	88.89	90.00	90.37	90.98	90.74	92.98	90.75	87.59	88.33	93.00	88.83	88.74	91.67	92.27	96.15	91.96	89.13	93.63	89.00	89.84	85.45	86.01	88.76	87.86	89.89	91.67	90.87	91.24	89.54	-1.70	0.205219	0.709176
K	intron_retention	RHOT2	chr16	+	chr16:723131-723479				chr16:723130-723131;chr16:723479-723480		7.25	3.25	5.33	5.26	2.96	4.35	0.00	0.00	0.00	0.00	3.33	0.00	1.92	0.00	0.00	3.57	2.86	0.00	4.72	3.28	4.00	4.65	5.05	4.00	5.81	2.44	7.04	4.65	4.76	4.76	8.43	5.74	6.34	4.88	4.41	5.97	3.98	2.86	-1.12	0.994452	1.000000
N	cassette	CMC1	chr3	+	chr3:28283393-28357823;chr3:28295257-28357823;chr3:28283304-28357823	chr3:28283393-28304781,chr3:28295257-28304781,chr3:28283304-28304781;chr3:28304872-28357823		chr3:28304782-28304871			50.00	72.09	58.46	NA	76.32	NA	67.50	65.38	77.27	90.91	80.77	58.82	74.36	67.86	80.43	80.00	84.00	76.92	53.57	68.00	68.29	81.82	90.00	80.00	68.75	53.85	58.00	NA	80.95	76.92	56.67	57.41	56.76	68.75	81.48	76.19	68.12	61.02	-7.10	0.292091	0.709176
K	jcn_only_AA	PTOV1	chr19	+	chr19:50361040-50361165	chr19:50361040-50361160		chr19:50361161-50361165	chr19:50361165-50361166		100.00	94.78	100.00	100.00	100.00	100.00	97.92	95.83	100.00	96.77	95.83	100.00	96.30	92.31	100.00	100.00	100.00	83.33	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.96	98.08	-0.89	0.632156	0.838192
N	alternative_acceptor	MOV10	chr1	+	chr1:113242963-113243037	chr1:113242963-113243017		chr1:113243018-113243037	chr1:113243037-113243038		3.12	2.53	1.85	5.56	3.51	2.36	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.00	2.84	2.52	7.14	4.35	1.56	0.00	1.52	2.94	4.08	0.00	2.29	6.25	4.32	5.45	3.03	3.70	2.79	0.00	2.18	2.18	0.322786	0.709013
N	jcn_only_AA	TCF25	chr16	+	chr16:89960267-89961424;chr16:89960267-89961445	chr16:89960267-89961490		chr16:89961425-89961445;chr16:89961446-89961490	chr16:89961445-89961446;chr16:89961490-89961491		5.17	0.00	6.76	0.00	4.00	NA	7.69	1.52	3.23	4.55	5.32	3.64	6.82	3.57	3.95	3.80	6.33	7.14	12.50	5.13	8.57	6.67	5.88	8.51	0.00	1.92	6.76	4.76	4.88	5.00	14.29	7.25	3.70	5.26	2.99	6.98	5.26	4.35	-0.91	0.958148	0.984403
N	jcn_only_AA	KXD1	chr19	+	chr19:18668725-18671209;chr19:18668725-18671229	chr19:18668725-18672845					96.97	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.00	100.00	96.83	100.00	98.48	100.00	100.00	100.00	98.41	100.00	NA	95.65	100.00	100.00	97.56	97.37	NA	100.00	97.67	97.37	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.367767	0.663989
N	cassette	FIG4	chr6	+	chr6:110113868-110146290	chr6:110113868-110117967;chr6:110118055-110146290		chr6:110117968-110118054			100.00	100.00	97.22	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	83.33	92.31	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.77	100.00	100.00	100.00	95.24	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	RPS9	chr19	+	chr19:54710331-54711265;chr19:54705478-54711265	chr19:54710593-54711265					7.77	4.49	5.19	5.89	3.44	6.98	2.63	8.77	10.28	3.35	2.15	2.33	1.44	6.88	6.17	3.58	1.97	2.05	4.54	7.11	8.58	6.74	3.20	6.59	6.49	6.72	7.88	5.05	2.75	6.07	11.90	10.02	6.01	3.08	3.15	5.85	4.52	7.44	2.92	0.005893	0.184071
N	alternative_donor	CCDC146	chr7	+	chr7:76797142-76866263	chr7:76827635-76866263		chr7:76797142-76827634	chr7:76797141-76797142		93.33	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	NA	NA	NA	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	0.00	0.363217	0.650093
K	alternative_donor	MPP1	chrX	-	chrX:154020123-154020467	chrX:154020123-154020416		chrX:154020417-154020467	chrX:154020467-154020468		94.03	100.00	100.00	NA	100.00	NA	96.55	95.24	100.00	98.31	97.86	97.24	97.22	95.65	98.33	96.90	100.00	96.82	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.15	96.63	100.00	100.00	97.53	94.44	92.65	NA	100.00	97.65	98.02	98.61	95.44	-3.17	0.083759	0.475124
K	jcn_only_AD	RPL14	chr3	+	chr3:40499239-40499380;chr3:40498855-40499380	chr3:40498966-40499380		chr3:40498855-40498965;chr3:40498966-40499238	chr3:40498854-40498855;chr3:40498965-40498966		12.50	8.73	15.07	10.64	7.14	16.22	4.89	14.29	15.15	6.13	4.66	4.67	2.98	13.33	15.04	5.34	2.65	5.59	4.00	0.00	11.24	6.42	5.88	8.74	8.33	11.54	19.05	5.61	6.56	4.72	26.83	19.12	5.95	7.23	11.11	8.33	5.42	12.91	7.49	0.093043	0.639657
K	alternative_donor	EWSR1	chr22	+	chr22:29695271-29695588	chr22:29695322-29695588		chr22:29695271-29695321	chr22:29695270-29695271		91.01	95.48	94.89	91.95	92.12	90.00	92.68	88.33	97.87	80.88	87.88	79.37	98.48	93.55	85.71	79.35	88.16	80.00	92.89	89.05	93.43	88.30	89.92	87.16	96.30	91.07	91.77	92.08	87.50	88.39	89.76	90.64	93.19	92.25	90.07	88.26	94.34	90.39	-3.95	0.005202	0.163838
N	alternative_donor	CDK11A,RP1-283E3.8	chr1	-	chr1:1636095-1636342	chr1:1636095-1636214		chr1:1636215-1636342	chr1:1636342-1636343		39.13	34.78	40.00	NA	21.43	NA	8.33	11.76	8.33	NA	9.09	NA	NA	NA	NA	NA	16.67	NA	0.00	6.45	11.76	16.67	11.11	11.76	15.38	20.00	31.58	20.00	18.18	25.00	12.28	9.28	9.52	13.95	11.63	6.78	9.52	12.28	2.76	0.611383	0.816739
K	intron_retention	ADAM8	chr10	-	chr10:135082367-135082948				chr10:135082366-135082367;chr10:135082948-135082949		4.58	3.39	8.62	0.00	3.28	0.00	0.00	2.63	1.56	0.00	1.09	0.00	0.00	1.43	3.01	0.00	0.78	0.00	3.57	5.88	4.35	0.00	8.00	2.78	12.00	6.45	5.88	0.00	5.33	0.00	7.32	7.00	0.00	4.26	0.00	1.33	1.70	5.23	3.54	0.992718	1.000000
K	alternative_acceptor	SECTM1	chr17	-	chr17:80282660-80285022	chr17:80282767-80285022		chr17:80282660-80282766	chr17:80282659-80282660		95.00	100.00	100.00	NA	95.24	87.50	100.00	96.22	95.68	100.00	100.00	94.83	94.74	96.66	94.20	95.24	96.61	100.00	100.00	95.00	100.00	100.00	95.38	94.67	100.00	100.00	100.00	92.31	100.00	92.80	95.42	94.52	100.00	97.30	92.59	92.31	100.00	95.82	-4.18	0.041436	0.568546
N	alternative_acceptor	MFSD11	chr17	+	chr17:74772624-74774282;chr17:74772624-74774269;chr17:74772624-74774301	chr17:74772624-74777122		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	4.35	0.00	8.33	0.00	NA	0.00	0.00	0.00	0.373901	0.709013
N	alternative_acceptor	LY6E	chr8	+	chr8:144102409-144102730;chr8:144102409-144102734;chr8:144102409-144102711	chr8:144102409-144102765		chr8:144102712-144102730;chr8:144102731-144102734;chr8:144102735-144102765	chr8:144102730-144102731;chr8:144102734-144102735;chr8:144102765-144102766		4.06	0.00	3.06	5.88	0.00	12.68	6.52	3.05	4.03	6.67	5.88	6.59	0.00	3.28	3.43	4.30	5.88	5.94	NA	10.06	11.27	23.08	0.00	6.38	NA	3.20	1.94	6.38	5.56	7.26	8.72	8.06	14.29	4.00	0.00	4.85	3.26	3.67	0.41	0.960342	0.990505
N	alternative_acceptor	KIAA2013	chr1	-	chr1:11980592-11982692;chr1:11980386-11982692	chr1:11980390-11982692		chr1:11980386-11980389;chr1:11980390-11980591	chr1:11980385-11980386;chr1:11980389-11980390		94.44	96.07	94.81	95.00	96.15	94.74	98.55	100.00	100.00	95.24	97.44	100.00	100.00	100.00	96.08	96.55	97.30	100.00	95.20	95.12	96.08	94.12	94.44	78.57	96.55	95.35	95.18	96.00	97.47	100.00	91.49	92.00	93.21	97.50	92.42	92.50	96.31	95.23	-1.08	0.760025	0.910949
K	jcn_only_AD	RNF220	chr1	+	chr1:45101261-45101701	chr1:45101339-45101701		chr1:45101261-45101338	chr1:45101260-45101261		18.52	22.08	35.94	NA	28.00	NA	25.64	37.14	32.81	31.03	42.65	21.05	23.53	25.00	38.33	39.08	30.85	25.00	27.78	17.39	40.74	21.74	32.81	29.17	25.00	16.67	36.54	25.00	27.91	36.84	0.00	23.26	35.00	26.92	27.27	31.25	25.32	17.95	-7.37	0.209168	0.657607
N	alternative_acceptor	NGRN	chr15	+	chr15:90809631-90814829;chr15:90809631-90818678	chr15:90809631-90814419		chr15:90814420-90814829;chr15:90814830-90818678	chr15:90814829-90814830;chr15:90818678-90818679		100.00	97.22	100.00	93.33	96.30	85.71	100.00	100.00	100.00	94.74	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.00	100.00	100.00	100.00	96.43	90.91	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	97.09	100.00	2.91	0.057950	0.570243
K	intron_retention	STOML2	chr9	-	chr9:35101277-35101422				chr9:35101276-35101277;chr9:35101422-35101423		3.03	0.00	2.86	4.76	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	4.55	13.04	6.12	3.64	3.45	2.17	0.00	0.00	1.51	1.51	0.502861	1.000000
N	jcn_only_AD		chr19	-	chr19:648488-648885	chr19:648488-648881		chr19:648882-648885	chr19:648885-648886		100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.59	96.15	100.00	100.00	100.00	100.00	100.00	97.30	95.00	100.00	100.00	92.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	alternative_acceptor	ALYREF	chr17	-	chr17:79846460-79847057	chr17:79846866-79847057		chr17:79846460-79846865	chr17:79846459-79846460		5.80	0.56	3.41	1.01	0.93	0.96	0.00	0.00	1.41	1.12	0.00	0.00	1.23	0.00	1.20	0.75	0.33	0.00	1.59	5.56	2.70	0.57	0.53	1.37	1.04	4.55	2.56	0.00	1.73	0.63	11.63	7.77	3.11	1.71	1.33	2.37	1.14	5.05	3.92	0.120692	0.606219
N	cassette	CLEC4A	chr12	+	chr12:8276557-8288180;chr12:8276798-8288180;chr12:8276557-8281859	chr12:8276798-8278156,chr12:8276557-8278156;chr12:8278274-8288180,chr12:8278274-8281859		chr12:8278157-8278273			90.80	83.72	90.00	100.00	87.50	NA	79.12	93.33	NA	97.44	94.52	100.00	87.74	93.44	NA	85.11	93.55	100.00	NA	100.00	93.10	100.00	100.00	100.00	NA	94.87	89.09	84.09	90.70	100.00	NA	98.63	100.00	100.00	100.00	100.00	85.73	93.44	7.71	0.227190	0.709176
K	intron_retention	TAPBPL	chr12	+	chr12:6570105-6571199				chr12:6570104-6570105;chr12:6571199-6571200		7.14	5.83	6.52	4.00	2.63	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	2.04	3.80	0.00	1.41	0.00	0.00	1.23	4.35	0.00	1.82	0.00	1.92	3.61	2.83	0.00	6.67	2.99	0.67	1.57	0.90	0.709885	1.000000
N	alternative_acceptor	FAM20C	chr7	+	chr7:208977-286380;chr7:208977-218268;chr7:208977-227647	chr7:208977-209193		chr7:209194-218268;chr7:218269-227647;chr7:227648-286380	chr7:218268-218269;chr7:227647-227648;chr7:286380-286381		0.72	5.88	0.63	0.00	2.82	NA	0.00	0.00	0.00	0.00	0.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.46	0.00	NA	0.00	0.00	1.43	0.84	0.00	0.00	0.00	0.00	1.94	1.39	0.00	0.00	0.00	0.00	0.421211	0.733210
N	cassette	MICAL1	chr6	-	chr6:109768781-109769405;chr6:109768433-109769934;chr6:109768644-109769934	chr6:109768781-109768883,chr6:109768433-109768883,chr6:109768644-109768883;chr6:109768926-109769934,chr6:109768926-109769405		chr6:109768884-109768925			100.00	100.00	85.00	NA	75.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	90.00	89.47	NA	NA	96.15	100.00	NA	100.00	100.00	100.00	88.89	75.00	90.00	100.00	87.50	100.00	100.00	0.00	0.436578	0.742855
K	intron_retention	NMRK1	chr9	-	chr9:77681757-77683911				chr9:77681756-77681757;chr9:77683911-77683912		0.00	0.00	4.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	NA	0.00	NA	0.00	3.39	2.78	0.00	2.33	5.88	0.00	7.79	4.00	0.00	2.17	4.49	1.89	2.63	3.39	4.35	7.69	6.56	0.00	0.94	0.94	0.524443	1.000000
K	intron_retention		chr12	+	chr12:53689424-53691828				chr12:53689423-53689424;chr12:53691828-53691829		11.54	8.99	19.67	12.86	14.16	8.85	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5.41	10.81	8.05	14.29	16.88	13.51	16.11	26.32	12.28	33.33	30.00	35.71	6.38	13.25	5.00	12.24	16.07	13.21	7.20	11.18	3.98	0.900194	1.000000
N	cassette	GMFG	chr19	-	chr19:39823767-39826613;chr19:39825946-39826613;chr19:39820267-39826613;chr19:39825951-39826613	chr19:39825946-39826074,chr19:39820267-39826074,chr19:39825951-39826074,chr19:39823767-39826074;chr19:39826195-39826613		chr19:39826075-39826194			88.73	83.09	85.23	87.39	84.98	87.50	96.69	95.29	95.24	93.60	94.44	96.27	97.66	97.30	96.43	97.41	96.38	98.73	87.03	92.11	93.75	88.52	88.81	92.50	90.16	96.77	87.50	89.41	92.42	92.59	78.43	87.10	86.70	84.42	85.33	84.85	88.59	93.70	5.11	0.753488	0.921860
K	alternative_acceptor	UNC45A	chr15	+	chr15:91479213-91479514	chr15:91479213-91479366		chr15:91479367-91479514	chr15:91479514-91479515		6.67	0.00	4.17	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	NA	NA	20.00	NA	NA	0.00	NA	0.00	5.26	6.67	NA	0.00	NA	NA	6.25	NA	10.00	10.53	18.18	0.00	5.26	5.26	0.237171	0.692777
N	jcn_only_AA	PITRM1	chr10	-	chr10:3183930-3185580;chr10:3183005-3185580	chr10:3182958-3185580		chr10:3182958-3183004;chr10:3183005-3183929	chr10:3182957-3182958;chr10:3183004-3183005		0.00	0.00	3.45	12.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	1.75	4.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	6.67	0.00	4.08	0.00	0.00	0.00	9.68	0.00	0.00	0.00	5.62	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	IRF3	chr19	-	chr19:50164086-50165401;chr19:50164086-50164706;chr19:50164086-50165441	chr19:50164086-50165204		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		77.50	81.05	66.67	NA	92.16	NA	100.00	94.74	93.33	NA	95.65	NA	97.37	100.00	92.31	NA	92.31	NA	90.79	84.00	84.93	NA	89.13	NA	82.41	84.00	82.81	NA	92.00	NA	70.83	68.33	78.67	69.23	77.78	61.54	86.60	84.00	-2.60	0.588625	0.799662
N	alternative_acceptor	RPL36	chr19	+	chr19:5690612-5691329;chr19:5690612-5691542	chr19:5690612-5690831		chr19:5690832-5691329;chr19:5691330-5691542	chr19:5691329-5691330;chr19:5691542-5691543		2.03	0.47	1.38	0.73	0.54	0.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.27	0.22	0.00	0.93	3.54	1.06	1.90	1.58	2.05	0.21	1.41	0.39	0.44	0.87	0.93	8.67	3.77	2.01	0.75	0.71	1.28	0.34	1.72	1.38	0.196309	0.661496
N	alternative_acceptor		chr10	.	chr10:101371124-101372299	chr10:101371219-101372299		chr10:101371124-101371218	chr10:101371123-101371124		63.69	48.65	59.67	47.06	52.00	38.89	5.26	5.44	3.76	6.35	9.68	3.70	0.00	3.64	4.79	4.44	2.78	4.10	50.00	57.26	45.28	53.66	51.52	57.04	8.33	45.11	49.75	31.37	33.33	27.79	53.40	51.20	53.33	43.28	45.00	49.85	28.49	49.25	20.76	0.501616	0.793046
K	cassette	MSRB1	chr16	-	chr16:1989145-1991257	chr16:1989145-1990778;chr16:1990894-1991257		chr16:1990779-1990893			91.67	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	FCGR2A	chr1	+	chr1:161476382-161479609;chr1:161476382-161479429	chr1:161476382-161477388		chr1:161477389-161479429;chr1:161479430-161479609	chr1:161479429-161479430;chr1:161479609-161479610		0.45	2.44	0.73	5.88	0.00	34.78	0.00	0.11	0.00	0.39	0.00	0.80	0.00	0.15	0.00	0.24	0.00	0.51	8.33	0.58	2.99	0.99	0.72	0.68	10.00	0.27	0.16	0.67	0.00	0.64	0.00	0.23	5.56	0.50	0.00	0.56	4.00	0.21	-3.79	0.063605	0.580713
K	jcn_only_AA	MBD1	chr18	-	chr18:47796189-47799046;chr18:47797911-47799046	chr18:47796182-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		13.89	5.88	13.33	0.00	8.33	NA	9.09	16.13	7.50	17.65	11.11	8.33	12.12	9.30	12.12	10.00	8.33	19.05	0.00	12.90	14.29	23.53	21.21	13.04	NA	11.63	9.52	28.57	10.34	13.64	20.69	13.64	0.00	0.00	13.51	14.29	5.88	13.39	7.51	0.019853	0.544869
K	cassette	CYP27A1	chr2	+	chr2:219647161-219676944	chr2:219647161-219674299;chr2:219674491-219676944		chr2:219674300-219674490			92.86	94.12	89.83	87.50	100.00	NA	98.79	97.62	100.00	96.83	97.44	98.28	96.84	95.10	93.10	95.71	97.62	100.00	88.89	93.02	98.25	97.37	94.86	98.51	100.00	100.00	100.00	95.00	96.74	100.00	94.53	94.19	88.89	93.08	94.71	98.15	95.48	94.81	-0.67	0.693194	0.887109
K	intron_retention		chrX	+	chrX:128926453-128926602				chrX:128926452-128926453;chrX:128926602-128926603		6.67	8.82	8.33	NA	5.00	NA	0.62	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	0.00	NA	0.00	3.45	7.69	NA	6.41	NA	0.00	2.52	8.64	7.69	1.64	NA	4.35	8.70	0.00	8.33	12.20	0.00	0.31	2.99	2.68	0.977240	1.000000
K	alternative_donor	LYPLA2	chr1	+	chr1:24117741-24119146	chr1:24118508-24119146		chr1:24117741-24118507	chr1:24117740-24117741		4.35	23.08	8.51	NA	10.00	NA	0.00	0.00	0.00	0.00	2.56	NA	2.00	0.00	3.57	0.00	0.00	0.00	NA	2.33	3.45	4.76	6.15	0.00	50.00	4.44	6.98	4.35	13.21	0.00	3.12	7.14	NA	4.17	4.76	6.90	12.54	2.73	-9.81	0.253960	0.624867
N	alternative_acceptor	TDP2	chr6	-	chr6:24651320-24653210;chr6:24651298-24653210;chr6:24651318-24653210	chr6:24651143-24653210		chr6:24651143-24651297;chr6:24651298-24651317;chr6:24651318-24651319	chr6:24651142-24651143;chr6:24651297-24651298;chr6:24651317-24651318		0.00	0.00	1.49	0.00	0.00	5.00	0.00	0.00	0.00	0.72	0.54	0.00	0.00	0.95	0.00	1.23	1.45	3.51	0.00	1.03	0.00	1.38	0.43	0.75	0.00	0.00	0.95	2.10	0.48	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.175123	0.660713
K	intron_retention		chrX	+	chrX:48760073-48760204				chrX:48760072-48760073;chrX:48760204-48760205		5.77	3.68	6.35	3.80	2.87	4.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	7.32	5.59	1.75	3.30	2.27	1.53	3.03	5.80	1.82	3.53	0.00	12.16	7.84	5.38	1.45	4.71	6.35	2.60	4.40	1.79	0.688645	1.000000
K	cassette	HAX1	chr1	+	chr1:154245253-154246249	chr1:154245253-154245811;chr1:154246075-154246249		chr1:154245812-154246074			89.66	75.00	79.73	NA	88.89	NA	100.00	100.00	97.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.00	91.89	90.91	94.12	91.30	NA	100.00	93.10	100.00	97.30	100.00	94.59	84.13	100.00	100.00	92.45	90.24	100.00	97.30	-2.70	0.947847	0.987421
K	alternative_donor	KDM5C	chrX	-	chrX:53222819-53222963	chrX:53222819-53222954		chrX:53222955-53222963	chrX:53222963-53222964		26.83	36.67	28.57	15.38	26.92	36.36	30.00	24.24	27.78	23.81	28.57	20.00	34.62	34.38	23.68	29.03	23.81	25.00	8.33	33.33	25.00	35.29	18.75	20.00	36.36	31.25	23.40	25.00	28.57	25.00	17.24	22.45	26.67	27.03	31.25	30.36	32.31	29.04	-3.27	0.865417	0.966092
N	coord_cassette	HK3	chr5	-	chr5:176317732-176318388	chr5:176317732-176317822;chr5:176317943-176318037;chr5:176318193-176318388		chr5:176317823-176317942;chr5:176318038-176318192			100.00	93.75	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.647127
N	jcn_only_AD	SLC26A11	chr17	+	chr17:78225197-78226423;chr17:78225845-78226423;chr17:78226261-78226423	chr17:78225201-78226423		chr17:78225197-78225200;chr17:78225201-78225844;chr17:78225845-78226260	chr17:78225196-78225197;chr17:78225200-78225201;chr17:78225844-78225845		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	93.33	100.00	100.00	100.00	97.30	100.00	100.00	98.18	100.00	100.00	100.00	100.00	96.30	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention	AGAP3	chr7	+	chr7:150837204-150838984				chr7:150837203-150837204;chr7:150838984-150838985		2.44	7.32	4.69	0.00	1.53	0.00	0.00	2.78	1.59	0.00	0.00	0.00	3.08	4.35	1.89	0.00	0.00	0.00	0.00	0.00	0.00	1.72	3.17	8.33	0.00	2.33	3.41	2.56	3.23	0.00	0.00	1.79	0.00	3.09	3.77	1.82	0.00	2.38	2.38	0.364523	1.000000
K	jcn_only_AA	SLC25A39	chr17	-	chr17:42398100-42398425	chr17:42398118-42398425		chr17:42398100-42398117	chr17:42398099-42398100		0.00	3.03	2.78	2.44	0.00	0.00	0.87	0.00	0.00	0.00	2.35	0.00	0.00	0.00	0.00	1.01	1.85	0.00	0.00	0.00	1.11	0.00	3.12	4.76	0.00	5.88	0.00	0.00	1.56	0.00	5.88	0.00	0.00	3.77	0.00	1.32	0.00	0.00	0.00	0.361372	0.663989
N	alternative_acceptor		chr1	+	chr1:52880320-52880403;chr1:52880320-52880412	chr1:52880320-52880433		chr1:52880404-52880412;chr1:52880413-52880433	chr1:52880412-52880413;chr1:52880433-52880434		100.00	NA	91.67	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	95.12	96.97	100.00	96.88	95.56	100.00	96.77	100.00	96.00	90.48	87.50	86.67	94.12	NA	95.24	95.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	95.24	96.97	100.00	98.00	-2.00	0.230444	0.684127
N	intron_retention		chr19	+	chr19:49469174-49469540				chr19:49469173-49469174;chr19:49469540-49469541		77.08	36.72	75.00	53.33	54.46	27.91	13.21	19.30	7.14	10.34	18.67	2.63	18.18	28.95	38.46	24.00	14.04	4.35	22.61	67.74	41.67	67.54	61.76	50.82	33.77	72.13	72.13	62.64	69.53	56.16	77.57	81.82	45.14	75.84	77.69	66.96	28.19	69.94	41.75	0.084777	1.000000
K	intron_retention	MAZ	chr16	+	chr16:29819615-29819890				chr16:29819614-29819615;chr16:29819890-29819891		0.00	3.03	2.17	0.00	1.56	NA	1.19	0.00	0.00	0.00	0.38	0.00	0.00	0.00	0.00	0.93	0.42	0.00	0.00	0.00	0.00	0.00	1.59	NA	0.00	7.69	2.70	2.78	1.85	0.00	0.00	8.00	0.00	0.00	3.88	0.00	0.00	0.00	0.00	0.528801	1.000000
K	cassette	LONP1	chr19	-	chr19:5708415-5713144	chr19:5708415-5711781;chr19:5712014-5713144		chr19:5711782-5712013			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	90.48	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention		chr11	+	chr11:46400051-46400540				chr11:46400050-46400051;chr11:46400540-46400541		14.55	18.00	21.43	10.00	21.43	13.33	1.28	4.17	4.00	NA	3.45	NA	4.00	6.45	3.70	8.70	6.52	NA	14.89	19.57	11.69	13.64	23.33	5.00	23.66	12.24	19.10	23.08	18.46	NA	12.82	17.86	13.51	14.81	14.63	10.34	14.20	12.53	-1.67	0.745401	1.000000
K	intron_retention	ZNRD1	chr6	+	chr6:30029447-30029693				chr6:30029446-30029447;chr6:30029693-30029694		10.00	4.26	3.77	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.13	0.00	4.92	0.00	6.06	NA	0.00	0.00	7.27	5.88	2.33	0.00	13.64	5.36	9.52	14.29	3.70	0.00	2.13	0.00	-2.13	0.838053	1.000000
N	alternative_donor	SNX3	chr6	-	chr6:108544250-108581963;chr6:108544250-108582011	chr6:108544250-108582029		chr6:108581964-108582011;chr6:108582012-108582029	chr6:108582011-108582012;chr6:108582029-108582030		17.78	15.25	12.50	0.00	10.81	NA	9.06	7.35	8.86	5.41	6.80	6.70	10.40	6.93	8.64	6.36	7.55	8.39	17.65	11.93	10.00	10.94	10.39	15.79	NA	11.18	12.88	5.56	8.89	10.53	13.48	15.45	0.00	16.36	12.70	15.00	10.40	11.55	1.15	0.788779	0.923946
K	cassette	NTAN1	chr16	-	chr16:15141408-15149747	chr16:15141408-15141711;chr16:15141778-15149747		chr16:15141712-15141777			80.56	100.00	75.00	80.00	83.33	NA	96.92	94.59	100.00	92.59	93.98	93.62	90.57	100.00	100.00	100.00	91.55	96.55	NA	77.78	100.00	88.00	85.42	96.30	NA	90.32	77.78	92.59	90.74	100.00	77.27	80.00	75.00	88.64	91.67	88.89	93.75	85.44	-8.31	0.590609	0.844113
K	alternative_acceptor	PSMF1	chr20	+	chr20:1145121-1146870	chr20:1145121-1145672		chr20:1145673-1146870	chr20:1146870-1146871		93.10	100.00	90.62	97.44	95.12	100.00	83.75	89.22	83.16	90.48	75.26	90.74	78.57	90.67	73.63	86.44	74.04	82.35	100.00	87.76	96.88	91.43	90.00	91.43	100.00	92.86	91.67	92.50	91.38	97.10	95.45	97.01	97.56	92.16	93.22	92.75	98.78	91.77	-7.02	0.674789	0.880186
K	intron_retention	LRCH4,RP11-44M6.7	chr7	-	chr7:100175013-100175119				chr7:100175012-100175013;chr7:100175119-100175120		3.12	4.05	10.34	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	2.38	0.00	0.00	0.00	3.03	1.52	2.82	NA	0.00	0.00	3.12	2.56	6.85	0.00	0.00	0.00	4.41	6.52	5.17	0.00	5.00	5.26	3.08	2.08	-1.00	0.979589	1.000000
N	alternative_acceptor		chr20	+	chr20:20003125-20004065;chr20:20003125-20005759	chr20:20003125-20006320		chr20:20004066-20005759;chr20:20005760-20006320	chr20:20005759-20005760;chr20:20006320-20006321		96.49	95.00	94.64	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	99.25	99.12	100.00	100.00	95.83	100.00	95.83	95.29	93.88	100.00	90.91	95.83	100.00	98.33	100.00	100.00	93.33	100.00	90.91	94.12	95.12	100.00	98.25	-1.75	0.281252	0.709013
K	intron_retention	TOM1	chr22	+	chr22:35726382-35743531				chr22:35726381-35726382;chr22:35743531-35743532		100.00	100.00	100.00	87.14	88.89	86.07	100.00	100.00	100.00	100.00	88.89	83.67	87.93	100.00	100.00	100.00	87.06	100.00	87.98	92.78	89.46	92.17	89.01	89.66	95.20	90.62	100.00	89.17	90.29	86.98	90.45	91.95	87.25	85.96	88.15	87.70	91.59	96.39	4.80	0.604724	1.000000
N	jcn_only_AD	MS4A6A,TRIM5	chr11	-	chr11:59949215-59950538;chr11:59949215-59950608;chr11:59949215-59949969;chr11:59949215-59950450;chr11:59949215-59949844	chr11:59949215-59949790		chr11:59949791-59949844;chr11:59949845-59949969;chr11:59949970-59950450;chr11:59950451-59950538;chr11:59950539-59950608	chr11:59949844-59949845;chr11:59949969-59949970;chr11:59950450-59950451;chr11:59950538-59950539;chr11:59950608-59950609		0.00	0.00	0.00	0.00	2.00	5.26	1.11	0.58	0.00	0.82	0.66	0.79	1.43	0.88	0.00	0.00	0.78	0.00	0.00	0.00	NA	2.67	2.11	2.09	0.00	0.99	0.00	1.56	1.28	0.44	0.00	0.00	0.00	0.54	0.58	1.92	0.00	0.29	0.29	0.964875	0.981627
K	intron_retention	SORBS3	chr8	+	chr8:22423998-22424173				chr8:22423997-22423998;chr8:22424173-22424174		10.00	4.88	NA	NA	8.70	NA	0.00	0.00	2.44	0.00	2.44	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	18.18	NA	9.09	16.13	5.88	20.69	5.00	NA	0.00	9.52	NA	NA	0.00	NA	3.33	6.90	6.45	0.00	5.00	5.00	0.989846	1.000000
N	cassette	HAUS4	chr14	-	chr14:23419620-23421536;chr14:23416941-23421536	chr14:23416941-23420763,chr14:23419620-23420763;chr14:23420899-23421536		chr14:23420764-23420898			88.89	97.92	80.43	NA	92.59	NA	97.01	93.02	91.67	100.00	91.53	90.62	90.91	93.75	97.62	95.00	91.30	100.00	88.89	89.66	86.36	NA	82.76	69.23	100.00	93.10	86.11	NA	90.91	91.67	88.24	88.46	100.00	90.00	88.24	93.75	97.47	91.34	-6.12	0.066700	0.622875
N	jcn_only_AA	METTL17	chr14	+	chr14:21464871-21464928;chr14:21464871-21464970	chr14:21464871-21464943		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		100.00	97.75	90.48	88.24	90.20	100.00	NA	NA	NA	NA	81.82	NA	85.00	NA	NA	NA	NA	NA	87.21	100.00	86.05	NA	88.57	NA	100.00	100.00	94.12	NA	100.00	100.00	93.75	91.18	81.61	100.00	84.21	93.33	87.21	100.00	12.79	0.090707	0.663989
K	cassette	SLC38A10	chr17	-	chr17:79220862-79225292	chr17:79220862-79223869;chr17:79223894-79225292		chr17:79223870-79223893			3.85	0.00	0.00	NA	0.00	NA	0.00	10.00	0.00	0.00	2.94	NA	2.56	NA	0.00	6.67	6.45	8.33	0.00	0.00	0.00	NA	4.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.301331	0.709176
N	cassette	C17orf62	chr17	-	chr17:80405498-80408575;chr17:80403837-80408575;chr17:80404573-80408575	chr17:80403837-80407045,chr17:80404573-80407045,chr17:80405498-80407045;chr17:80407169-80408575		chr17:80407046-80407168			96.04	100.00	100.00	NA	93.75	NA	100.00	98.97	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	NA	100.00	100.00	100.00	100.00	97.80	100.00	100.00	95.00	100.00	96.88	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.255525	0.709176
N	jcn_only_AA	NGRN	chr15	+	chr15:90809631-90814829;chr15:90809631-90818678	chr15:90809631-90814419		chr15:90814420-90814829;chr15:90814830-90818678	chr15:90814829-90814830;chr15:90818678-90818679		100.00	100.00	100.00	NA	93.55	NA	100.00	100.00	100.00	92.31	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	95.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_donor	ARSA	chr22	-	chr22:51065835-51066418;chr22:51065835-51065983	chr22:51065835-51066373		chr22:51065984-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		9.09	4.65	13.46	0.00	0.00	NA	4.05	2.27	3.75	6.00	8.82	3.39	3.45	3.95	2.94	0.00	0.00	0.00	0.00	10.53	0.00	0.00	8.77	5.71	0.00	6.58	6.25	0.00	4.26	0.00	6.06	13.04	15.79	3.33	2.78	0.00	3.75	6.32	2.57	0.532574	0.776719
N	alternative_donor	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139918669-139921756	chr5:139919012-139921756		chr5:139918669-139919011	chr5:139918668-139918669		20.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	7.69	0.00	8.33	6.67	0.00	0.00	3.57	9.38	0.00	0.00	0.00	14.29	16.00	5.26	5.88	0.00	0.00	0.00	5.63	5.63	0.100730	0.504121
N	alternative_acceptor	HAUS4	chr14	-	chr14:23417223-23419522;chr14:23417175-23419522	chr14:23417243-23419522		chr14:23417175-23417222;chr14:23417223-23417242	chr14:23417174-23417175;chr14:23417222-23417223		5.88	0.00	2.94	NA	6.90	NA	3.51	0.00	0.00	0.00	1.82	0.00	0.00	0.00	2.56	0.00	1.96	0.00	0.00	3.85	0.00	NA	3.85	NA	0.00	0.00	3.12	NA	3.85	7.14	6.25	0.00	0.00	7.69	11.76	10.00	0.00	1.93	1.93	0.171802	0.660713
K	jcn_only_AD	ZSWIM8	chr10	+	chr10:75553457-75553622	chr10:75553478-75553622		chr10:75553457-75553477	chr10:75553456-75553457		93.10	100.00	90.00	NA	NA	NA	100.00	95.24	100.00	96.00	100.00	100.00	91.18	100.00	100.00	95.65	97.44	NA	NA	88.46	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	80.00	91.43	NA	95.00	93.55	90.00	100.00	94.17	-5.83	0.227838	0.657607
N	jcn_only_AA	SLC39A13	chr11	+	chr11:47436711-47436948;chr11:47436711-47436838	chr11:47436711-47437875		chr11:47436839-47436948;chr11:47436949-47437875	chr11:47436948-47436949;chr11:47437875-47437876		0.00	0.00	1.11	6.98	3.45	8.57	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.41	0.00	5.71	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	6.67	0.00	0.00	1.75	0.00	0.00	0.00	0.175424	0.663989
N	alternative_acceptor	AKNA	chr9	-	chr9:117099587-117103812	chr9:117100038-117103812		chr9:117099587-117100037	chr9:117099586-117099587		4.00	0.00	0.00	NA	3.39	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.89	0.00	5.26	0.00	0.00	NA	2.15	4.76	7.69	0.00	1.92	NA	3.12	5.26	NA	2.70	0.00	7.69	5.00	0.00	0.78	0.00	-0.78	0.331207	0.709013
K	alternative_last_exon	NFX1	chr9	+	chr9:33347116-33351613;chr9:33347116-33351557	chr9:33347116-33347660	chr9:33351558-33351788	chr9:33347661-33348721			85.00	100.00	68.00	95.24	94.12	100.00	63.64	60.00	61.54	63.33	68.75	64.71	58.33	58.82	57.58	61.29	63.33	58.82	100.00	75.00	88.89	70.83	74.36	82.86	100.00	72.73	63.16	73.68	75.00	92.00	80.00	69.23	100.00	71.43	60.00	73.17	100.00	73.87	-26.13	0.146664	0.353075
K	alternative_acceptor	DNAJC25-GNG10,GNG10	chr9	+	chr9:114429227-114431551	chr9:114429227-114431548		chr9:114431549-114431551	chr9:114431551-114431552		43.64	36.00	40.44	48.15	41.03	35.29	49.66	48.46	46.55	50.00	50.81	51.11	48.08	50.77	55.79	50.44	51.33	47.78	53.85	46.73	50.00	48.81	45.35	42.06	70.00	50.00	43.96	56.31	40.74	48.51	50.00	43.16	28.57	51.72	44.58	47.37	48.87	49.23	0.36	0.927287	0.978996
K	intron_retention	RP11-809N8.4	chr11	+	chr11:73116430-73117487				chr11:73116429-73116430;chr11:73117487-73117488		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.15	NA	93.33	100.00	92.00	NA	NA	NA	100.00	92.86	100.00	NA	100.00	NA	100.00	90.48	NA	NA	100.00	NA	100.00	100.00	0.00	0.594508	1.000000
N	cassette	RILPL2	chr12	-	chr12:123907705-123920628;chr12:123900469-123920628	chr12:123900469-123915054,chr12:123907705-123915054;chr12:123915207-123920628		chr12:123915055-123915206			85.71	92.59	86.00	88.99	91.78	84.21	89.66	90.70	91.44	88.66	93.33	89.69	84.00	92.09	90.57	89.38	88.72	90.15	85.00	89.38	87.59	84.88	88.00	85.44	82.35	88.51	87.88	85.71	87.50	83.18	90.68	89.77	88.57	91.55	90.36	91.16	86.78	90.03	3.25	0.211590	0.709176
N	jcn_only_AD	ADRM1	chr20	+	chr20:60878102-60878623	chr20:60878106-60878623		chr20:60878102-60878105	chr20:60878101-60878102		87.06	80.60	91.67	91.49	90.00	100.00	91.36	91.59	92.55	91.67	90.62	100.00	87.80	90.53	90.38	88.61	86.43	85.56	100.00	100.00	91.89	100.00	87.39	87.91	NA	92.78	92.86	89.86	95.00	94.19	88.54	87.61	82.93	88.64	89.19	85.16	87.80	91.06	3.26	0.439552	0.696909
N	alternative_acceptor	SLC39A13	chr11	+	chr11:47435238-47435835;chr11:47435238-47435975	chr11:47435238-47435853		chr11:47435836-47435853;chr11:47435854-47435975	chr11:47435853-47435854;chr11:47435975-47435976		1.27	1.64	4.55	3.85	12.24	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32	0.00	1.33	1.11	0.00	3.23	3.95	2.17	4.26	9.86	7.41	10.00	1.75	6.67	4.76	6.12	4.00	0.00	2.47	3.03	3.57	4.81	2.74	2.33	1.29	-1.04	0.360280	0.709013
N	alternative_donor	INTS4	chr11	-	chr11:77590174-77594877	chr11:77590174-77592479		chr11:77592480-77594877	chr11:77594877-77594878		5.56	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
K	alternative_donor	DLG4	chr17	-	chr17:7107572-7108264;chr17:7107572-7111393	chr17:7107572-7111492		chr17:7108265-7111393;chr17:7111394-7111492	chr17:7111393-7111394;chr17:7111492-7111493		88.24	69.23	71.43	NA	NA	NA	90.48	100.00	100.00	NA	90.91	NA	90.32	100.00	91.67	NA	96.77	100.00	NA	NA	NA	NA	NA	NA	41.67	90.91	60.00	NA	90.00	NA	NA	76.92	NA	NA	80.00	NA	79.78	95.45	15.68	0.153374	0.563271
K	intron_retention	ZBTB17	chr1	-	chr1:16268748-16268825				chr1:16268747-16268748;chr1:16268825-16268826		10.34	8.16	6.33	4.17	5.77	3.43	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	7.84	9.68	8.80	6.82	5.71	4.94	4.17	3.75	4.35	4.35	6.52	5.30	13.89	9.68	18.84	3.85	7.50	7.83	6.00	6.71	0.71	0.709167	1.000000
N	alternative_acceptor	TIMM10	chr11	-	chr11:57297708-57298130;chr11:57297767-57298130	chr11:57298012-57298130		chr11:57297708-57297766;chr11:57297767-57298011	chr11:57297707-57297708;chr11:57297766-57297767		9.09	0.00	0.00	0.00	0.00	4.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	13.33	1.25	0.00	0.00	0.00	42.11	6.06	0.00	0.00	4.55	0.00	44.44	4.76	0.00	0.00	2.94	29.41	10.00	0.00	0.00	0.00	4.35	0.00	35.76	35.76	0.030694	0.557523
K	intron_retention	SPG11	chr15	-	chr15:44858208-44858414				chr15:44858207-44858208;chr15:44858414-44858415		1.96	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	3.57	3.12	NA	0.00	NA	0.00	2.56	0.00	10.00	4.00	0.00	NA	0.00	0.00	0.00	5.88	0.00	3.12	0.00	0.00	0.00	5.13	5.88	0.00	2.26	2.26	0.418462	1.000000
K	alternative_acceptor	HMG20B,ZNF790-AS1	chr19	+	chr19:3574585-3575537	chr19:3574585-3575499		chr19:3575500-3575537	chr19:3575537-3575538		0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	3.03	1.16	0.00	1.52	0.00	4.00	0.00	1.67	0.00	0.00	0.00	3.17	2.25	11.11	0.00	0.00	1.54	2.00	0.00	-2.00	0.291513	0.709013
N	cassette	DHPS	chr19	-	chr19:12786893-12788104;chr19:12786920-12788104;chr19:12786957-12788104	chr19:12786920-12787921,chr19:12786957-12787921,chr19:12786893-12787921;chr19:12788026-12788104		chr19:12787922-12788025			69.23	60.00	77.78	62.50	54.29	61.29	86.67	76.67	80.00	92.31	85.71	90.91	85.71	87.50	72.55	84.38	82.05	92.00	62.50	75.00	61.22	NA	47.83	NA	53.33	78.95	61.11	68.75	66.67	64.00	50.00	48.39	44.44	NA	NA	66.67	61.25	75.84	14.59	0.415860	0.728056
K	jcn_only_AD	GRINA	chr8	+	chr8:145064368-145065367;chr8:145065076-145065367	chr8:145064480-145065367		chr8:145064368-145064479;chr8:145064480-145065075	chr8:145064367-145064368;chr8:145064479-145064480		18.09	23.53	20.71	26.67	28.57	NA	11.48	15.19	18.46	17.36	15.88	19.29	13.91	17.06	18.91	12.92	17.56	23.14	NA	19.76	20.14	13.98	13.12	13.38	27.78	17.42	21.40	10.61	11.76	12.16	13.92	14.88	NA	17.92	16.27	19.58	18.72	17.24	-1.48	0.603990	0.805858
N	alternative_acceptor	DHPS	chr19	-	chr19:12786920-12787921;chr19:12786893-12787921	chr19:12786957-12787921		chr19:12786893-12786919;chr19:12786920-12786956	chr19:12786892-12786893;chr19:12786919-12786920		100.00	92.59	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.363217	0.709013
K	cassette	RNF7	chr3	+	chr3:141457359-141462350	chr3:141457359-141461485;chr3:141461750-141462350		chr3:141461486-141461749			0.00	1.32	2.74	0.00	1.33	0.00	1.25	1.67	1.83	1.92	0.00	0.00	2.38	1.45	1.83	1.14	2.15	0.00	0.00	2.13	1.27	2.78	1.27	5.88	0.00	3.12	2.13	0.00	1.80	0.00	1.96	1.16	0.00	3.92	1.32	2.63	0.62	1.81	1.19	0.153418	0.709176
K	intron_retention	CCNDBP1	chr15	+	chr15:43486660-43486924				chr15:43486659-43486660;chr15:43486924-43486925		0.00	1.67	4.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.61	0.00	3.23	0.00	0.00	2.47	3.12	0.00	1.79	3.57	4.08	3.45	3.45	5.13	2.38	0.00	0.00	0.83	0.83	0.819911	1.000000
N	cassette	ST14	chr11	+	chr11:130066596-130068202	chr11:130066596-130067735;chr11:130067841-130068202		chr11:130067736-130067840			91.30	81.82	100.00	NA	89.19	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	93.33	95.65	NA	NA	100.00	100.00	93.33	93.33	NA	NA	92.31	100.00	100.00	98.15	NA	100.00	100.00	100.00	84.38	100.00	100.00	100.00	100.00	0.00	0.810893	0.936947
N	alternative_donor	MMP14	chr14	+	chr14:23306135-23310699;chr14:23308493-23310699	chr14:23306647-23310699		chr14:23306135-23306646;chr14:23306647-23308492	chr14:23306134-23306135;chr14:23306646-23306647		0.08	1.16	0.20	6.25	0.00	6.67	0.00	0.16	0.11	0.00	0.00	0.28	0.00	0.23	0.13	0.13	0.11	0.37	0.00	0.08	0.79	0.69	0.26	0.30	0.00	0.30	0.00	0.00	0.00	0.92	0.19	0.13	0.00	0.35	0.24	0.43	0.00	0.17	0.17	0.922652	0.984606
N	jcn_only_AA	OSTF1	chr9	+	chr9:77732467-77742488;chr9:77732467-77742484	chr9:77732467-77741392		chr9:77741393-77742484;chr9:77742485-77742488	chr9:77742484-77742485;chr9:77742488-77742489		0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.36	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.25	0.00	0.00	0.00	0.00	0.67	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr7	+	chr7:150771381-150771485				chr7:150771380-150771381;chr7:150771485-150771486		1.87	13.51	4.55	0.00	3.51	0.00	0.00	0.84	0.00	0.00	0.00	0.00	1.27	0.00	1.05	1.59	0.00	0.00	4.35	3.16	3.33	8.82	9.21	2.86	12.50	0.96	3.30	5.00	4.69	2.70	2.90	2.44	0.00	2.82	5.41	6.33	2.81	1.42	-1.39	0.694480	1.000000
N	jcn_only_AD	CARD16	chr11	-	chr11:104915386-104916017;chr11:104915386-104915522	chr11:104915386-104915917		chr11:104915523-104915917;chr11:104915918-104916017	chr11:104915917-104915918;chr11:104916017-104916018		25.81	7.69	15.62	33.33	8.33	21.05	0.00	13.04	7.69	14.29	12.00	14.81	0.00	15.15	NA	27.78	0.00	11.76	0.00	NA	0.00	6.67	0.00	18.75	0.00	15.00	10.26	23.40	3.12	19.12	6.90	8.86	0.00	18.18	NA	19.05	0.00	15.00	15.00	0.007170	0.214369
K	alternative_acceptor	RPS25	chr11	-	chr11:118888144-118888667;chr11:118888510-118888667	chr11:118888256-118888667		chr11:118888144-118888255;chr11:118888256-118888509	chr11:118888143-118888144;chr11:118888255-118888256		89.60	93.66	94.04	94.26	94.15	91.87	96.67	97.34	96.99	95.95	95.87	95.05	97.08	96.22	97.01	96.85	95.25	96.03	90.13	89.90	90.84	92.50	90.40	91.27	93.45	94.12	94.82	93.46	93.03	93.17	89.37	90.45	90.56	94.44	93.96	94.29	93.56	92.01	-1.55	0.669221	0.880186
N	jcn_only_AD	DNMT1	chr19	-	chr19:10246964-10247760	chr19:10246964-10247751		chr19:10247752-10247760	chr19:10247760-10247761		12.96	0.00	8.70	10.71	7.81	NA	12.33	0.00	13.04	11.63	14.04	30.77	13.22	17.95	14.29	12.86	10.48	29.41	8.70	12.90	3.70	14.75	10.66	NA	0.00	0.00	0.00	7.79	9.89	NA	0.00	9.09	4.08	15.79	11.67	18.18	6.39	6.45	0.06	0.829748	0.923322
K	jcn_only_AA	MYL6B	chr12	+	chr12:56546416-56547656	chr12:56546416-56547592		chr12:56547593-56547656	chr12:56547656-56547657		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	8.70	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	ACADVL	chr17	+	chr17:7126557-7126962				chr17:7126556-7126557;chr17:7126962-7126963		12.00	5.33	14.63	3.16	8.11	3.23	0.00	0.00	0.00	0.00	0.46	0.00	1.18	0.00	2.34	0.00	0.00	0.00	3.64	8.94	3.75	6.31	10.55	3.94	2.63	10.34	11.83	3.23	5.75	2.82	9.92	12.93	4.27	10.08	8.00	5.81	3.13	9.43	6.29	0.265193	1.000000
N	alternative_donor	MARCH5	chr10	+	chr10:94109545-94110847	chr10:94109595-94110847		chr10:94109545-94109594	chr10:94109544-94109545		78.57	62.50	76.74	NA	73.33	NA	100.00	91.67	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	NA	79.31	90.91	87.50	81.82	83.33	NA	69.77	78.95	100.00	87.50	82.61	53.12	66.67	63.64	85.00	81.08	88.37	79.32	78.94	-0.38	0.902392	0.979133
N	jcn_only_AA	COX7A2L	chr2	-	chr2:42578496-42580351;chr2:42578500-42580351	chr2:42562886-42580351		chr2:42562886-42578495;chr2:42578496-42578499	chr2:42562885-42562886;chr2:42578495-42578496		0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	3.75	0.00	2.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.81	4.44	5.36	0.00	2.33	0.00	66.67	0.00	7.23	5.00	3.12	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	-0.93	0.278947	0.663989
K	jcn_only_AA	KIN	chr10	-	chr10:7796033-7801852	chr10:7798106-7801852		chr10:7796033-7798105	chr10:7796032-7796033		100.00	100.00	100.00	90.91	94.44	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.86	100.00	85.71	100.00	NA	100.00	NA	NA	100.00	87.50	100.00	100.00	95.83	94.74	90.91	100.00	100.00	91.30	100.00	100.00	100.00	0.00	0.227201	0.663989
N	jcn_only_AD	MS4A6A	chr11	-	chr11:59945790-59946266;chr11:59945790-59949053;chr11:59945790-59946687	chr11:59945790-59947303					97.73	93.46	100.00	94.00	92.62	89.47	97.80	99.12	100.00	97.26	96.98	96.73	97.62	100.00	NA	97.84	98.30	96.40	93.75	100.00	NA	93.90	93.63	96.67	94.59	97.30	86.96	93.33	94.00	93.64	81.82	89.47	90.48	95.14	95.95	96.88	94.17	98.43	4.26	0.669681	0.830911
N	alternative_acceptor	ZMIZ2,ZNF212	chr7	+	chr7:44800193-44801047	chr7:44800193-44801020		chr7:44801021-44801047	chr7:44801047-44801048		2.04	0.00	6.87	NA	NA	NA	5.88	5.26	5.17	10.00	3.70	10.53	0.00	4.35	7.69	10.81	7.14	7.14	NA	2.13	5.26	0.00	8.57	3.70	0.00	6.76	5.04	5.26	11.76	0.00	0.00	5.06	NA	5.56	7.59	4.69	0.00	3.24	3.24	0.317402	0.709013
N	jcn_only_AD	GK	chrX	+	chrX:30739113-30742217;chrX:30725716-30742217	chrX:30739896-30742217					2.31	0.00	2.37	3.09	0.00	1.63	0.00	0.67	0.59	0.00	0.00	3.03	0.00	1.47	0.00	2.08	0.00	0.00	0.00	2.40	2.56	0.00	0.00	0.00	0.00	2.55	2.16	0.00	0.00	0.00	4.49	3.17	9.52	4.20	0.00	1.44	0.00	2.35	2.35	0.677945	0.834613
N	jcn_only_AA	ARRDC4,FES	chr15	+	chr15:91433509-91433636;chr15:91433509-91433630	chr15:91433509-91433595		chr15:91433596-91433630;chr15:91433631-91433636	chr15:91433630-91433631;chr15:91433636-91433637		39.58	41.67	40.00	NA	40.00	NA	3.64	6.67	5.88	0.00	11.43	9.09	11.76	NA	NA	NA	14.29	0.00	33.33	26.32	50.00	NA	35.29	NA	26.32	25.00	47.62	NA	40.74	NA	50.00	46.15	34.78	NA	58.82	37.50	29.82	26.32	-3.50	0.663926	0.851109
N	intron_retention		chr1	-	chr1:32095700-32096150				chr1:32095699-32095700;chr1:32096150-32096151		100.00	100.00	98.73	93.33	96.30	91.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	96.67	100.00	100.00	100.00	97.83	100.00	100.00	98.85	100.00	97.06	100.00	95.16	100.00	95.89	94.64	100.00	100.00	100.00	100.00	0.00	0.859772	1.000000
K	intron_retention	SLC4A2	chr7	+	chr7:150765142-150767033				chr7:150765141-150765142;chr7:150767033-150767034		0.00	11.76	4.11	NA	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	2.08	5.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	18.18	0.00	1.67	0.00	0.00	0.00	0.00	0.486178	1.000000
N	jcn_only_AD	SDHB	chr1	-	chr1:17371384-17380442;chr1:17371384-17380246	chr1:17371384-17371635		chr1:17371636-17380246;chr1:17380247-17380442	chr1:17380246-17380247;chr1:17380442-17380443		18.06	0.00	0.00	0.00	0.00	NA	1.16	60.09	5.88	0.00	0.46	0.00	0.00	69.73	8.33	0.00	1.04	0.00	0.00	30.38	0.00	0.00	1.80	6.38	NA	71.49	1.69	2.44	0.00	0.00	14.00	0.00	0.00	0.00	0.00	2.44	0.00	45.23	45.23	0.009471	0.237005
N	jcn_only_AA		chr2	+	chr2:112779972-112796927;chr2:112779972-112782717	chr2:112779972-112785927		chr2:112782718-112785927;chr2:112785928-112796927	chr2:112785927-112785928;chr2:112796927-112796928		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	100.00	NA	100.00	NA	100.00	100.00	98.94	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	71.43	100.00	100.00	0.00	0.363217	0.663989
N	alternative_donor	PRKCSH	chr19	+	chr19:11558434-11558507;chr19:11558323-11558507	chr19:11558413-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		72.73	47.37	53.85	NA	63.64	NA	70.00	63.64	NA	62.50	60.00	66.67	60.00	NA	NA	NA	58.33	NA	50.00	60.00	60.00	NA	46.67	NA	40.00	66.67	45.45	NA	62.50	64.29	50.00	53.33	50.00	NA	50.00	56.25	50.00	63.64	13.64	0.124359	0.540946
K	intron_retention	TSTA3	chr8	-	chr8:144695136-144695365				chr8:144695135-144695136;chr8:144695365-144695366		7.14	10.34	13.51	15.62	12.24	13.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	5.00	0.00	2.13	0.00	7.06	0.00	9.38	8.33	12.50	21.05	21.54	6.25	8.82	8.33	9.68	4.55	9.30	10.91	11.50	0.00	9.52	10.00	8.70	6.70	-2.00	0.975623	1.000000
K	cassette	NPLOC4	chr17	-	chr17:79526443-79532530	chr17:79526443-79527587;chr17:79527656-79532530		chr17:79527588-79527655			2.78	5.56	2.27	0.00	0.00	0.00	0.00	1.45	1.79	2.22	0.00	0.00	0.00	0.00	1.28	1.89	0.00	0.00	NA	2.27	0.00	0.00	0.00	3.03	NA	2.99	2.33	0.00	0.00	2.94	3.57	3.23	0.00	2.17	0.00	2.35	0.00	2.52	2.52	0.625362	0.863282
N	alternative_acceptor	TYMP	chr22	-	chr22:50968161-50968332;chr22:50968045-50968332;chr22:50968177-50968332;chr22:50968184-50968332;chr22:50966175-50968332	chr22:50968149-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		65.69	56.92	62.31	68.48	67.16	64.85	76.32	74.20	72.99	71.43	64.71	71.76	73.61	70.52	70.42	69.34	69.62	71.71	62.82	66.59	70.51	63.45	62.31	63.52	64.04	65.82	66.31	64.43	65.45	68.08	63.39	66.81	59.74	64.08	60.99	61.47	63.43	66.20	2.77	0.566150	0.831954
K	jcn_only_AD	DENND4B,TRAPPC3	chr1	-	chr1:36605768-36614860;chr1:36605768-36614937	chr1:36605768-36614692		chr1:36614693-36614860;chr1:36614861-36614937	chr1:36614860-36614861;chr1:36614937-36614938		10.94	11.48	4.76	15.15	10.00	14.63	6.67	9.84	14.29	10.11	9.17	6.38	8.33	15.38	17.54	14.29	11.36	13.16	10.00	5.48	6.17	12.50	14.14	6.25	0.00	6.58	5.00	8.89	7.69	6.56	9.33	11.58	16.98	21.05	9.52	5.80	9.16	9.59	0.42	0.806927	0.908954
N	jcn_only_AA	C14orf119,PSMA3	chr14	+	chr14:23564829-23566866;chr14:23564829-23566978	chr14:23564829-23566850		chr14:23566851-23566866;chr14:23566867-23566978	chr14:23566866-23566867;chr14:23566978-23566979		0.00	0.00	0.00	0.00	0.00	NA	0.00	1.43	0.00	2.99	0.00	0.00	1.96	0.00	0.00	1.28	0.00	0.00	0.00	0.00	4.35	0.00	3.20	8.16	0.00	0.00	0.00	4.35	1.98	0.00	3.08	0.00	0.00	1.67	4.48	1.89	0.00	0.00	0.00	0.508087	0.759046
N	cassette	NQO2	chr6	+	chr6:3000320-3006701;chr6:3000320-3003902;chr6:3000320-3004728	chr6:3000320-3002283;chr6:3002521-3006701,chr6:3002521-3004728,chr6:3002521-3003902		chr6:3002284-3002520			1.39	1.16	2.08	0.00	1.33	0.00	0.00	5.56	7.32	3.70	2.78	8.33	2.33	9.76	8.77	2.22	4.62	3.03	3.33	0.00	NA	2.44	3.74	4.44	0.00	2.00	1.27	3.03	2.73	0.00	9.09	2.70	0.00	3.77	0.00	3.57	0.58	3.78	3.20	0.097210	0.670971
K	intron_retention	MYO9B	chr19	+	chr19:17286551-17291735				chr19:17286550-17286551;chr19:17291735-17291736		0.00	0.00	1.35	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.98	0.00	0.49	0.00	0.00	0.00	NA	0.00	1.04	0.00	5.26	1.20	2.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.88	0.73	0.00	0.00	0.00	0.601311	1.000000
K	intron_retention	NADK	chr1	-	chr1:1687783-1687941				chr1:1687782-1687783;chr1:1687941-1687942		2.40	4.76	8.11	NA	NA	7.69	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.35	0.00	0.00	0.00	0.00	15.38	2.34	0.00	0.00	1.96	0.00	0.00	2.37	2.33	3.33	0.00	0.00	1.96	4.96	7.41	7.69	3.70	2.54	2.38	2.15	-0.23	0.698198	1.000000
K	jcn_only_AD	MICALL1	chr22	+	chr22:38333800-38336715	chr22:38333827-38336715		chr22:38333800-38333826	chr22:38333799-38333800		7.89	0.00	6.25	4.55	8.33	7.69	11.54	8.22	5.63	4.70	4.35	6.76	15.00	4.41	10.61	7.45	10.20	4.79	10.00	7.41	6.90	5.88	5.88	3.66	NA	5.08	3.33	7.25	6.06	2.92	2.33	4.76	NA	6.52	0.00	2.56	10.77	6.25	-4.52	0.395214	0.660946
N	jcn_only_AD	PFKL	chr21	+	chr21:45742898-45743648	chr21:45742933-45743648		chr21:45742898-45742932	chr21:45742897-45742898		97.73	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.88	100.00	100.00	97.26	100.00	100.00	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	96.23	96.43	100.00	100.00	100.00	0.00	0.226572	0.657607
N	jcn_only_AA		chr6	+	chr6:36989381-36990092	chr6:36989381-36990014		chr6:36990015-36990092	chr6:36990092-36990093		100.00	100.00	NA	NA	NA	NA	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	96.55	NA	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.211668	0.663989
K	cassette	PIH1D1	chr19	-	chr19:49951166-49952731	chr19:49951166-49951257;chr19:49951320-49952731		chr19:49951258-49951319			97.87	100.00	96.61	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	90.32	96.92	100.00	96.67	100.00	100.00	96.15	96.55	91.67	96.00	100.00	91.18	91.67	95.59	100.00	100.00	100.00	100.00	97.01	-2.99	0.150353	0.709176
N	cassette	KCNQ1	chr11	+	chr11:2797285-2799205	chr11:2797285-2798215;chr11:2798263-2799205		chr11:2798216-2798262			82.61	91.80	NA	80.00	83.33	NA	95.00	100.00	NA	92.00	93.18	96.15	94.64	100.00	NA	100.00	90.20	100.00	81.82	NA	NA	100.00	88.33	81.48	100.00	88.89	NA	100.00	86.00	100.00	100.00	82.35	91.30	83.33	93.02	89.39	93.22	100.00	6.78	0.681857	0.883836
K	jcn_only_AA	CDV3	chr3	+	chr3:133305567-133306002;chr3:133305567-133306739;chr3:133305567-133307196	chr3:133305567-133306005		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		14.29	24.07	13.04	21.28	15.73	16.49	8.72	8.57	5.39	7.82	8.22	4.17	5.32	9.94	7.69	6.19	6.99	5.04	19.61	10.94	19.70	7.76	8.93	5.85	14.44	7.95	8.43	13.25	5.88	11.68	14.52	12.33	17.58	7.41	8.82	10.62	16.01	10.44	-5.57	0.244975	0.663989
N	alternative_acceptor	COASY	chr17	+	chr17:40717066-40717244;chr17:40717066-40717247	chr17:40717066-40717250		chr17:40717245-40717247;chr17:40717248-40717250	chr17:40717247-40717248;chr17:40717250-40717251		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	TFEC	chr7	-	chr7:115580986-115581946;chr7:115580778-115581946	chr7:115580499-115581946		chr7:115580499-115580777;chr7:115580778-115580985	chr7:115580498-115580499;chr7:115580777-115580778		0.00	0.00	0.00	0.00	3.33	NA	3.23	6.27	3.43	4.00	5.17	10.28	2.13	3.85	2.65	3.92	11.11	9.20	0.00	4.35	0.00	6.06	4.26	5.71	NA	1.78	0.00	2.53	0.00	4.44	3.95	0.95	NA	0.00	0.00	0.00	1.06	3.90	2.84	0.130961	0.663989
K	cassette	VAPA	chr18	+	chr18:9937064-9950391	chr18:9937064-9944920;chr18:9945056-9950391		chr18:9944921-9945055			1.11	0.00	2.44	0.00	5.77	10.53	3.17	4.71	3.53	11.36	6.84	9.09	7.26	5.15	4.58	10.88	8.46	12.93	0.00	3.23	1.39	7.27	8.75	7.14	NA	1.61	3.45	9.52	9.58	9.73	1.67	2.63	5.56	7.07	7.81	5.68	3.17	2.45	-0.72	0.866377	0.953900
N	cassette	MEF2D	chr1	-	chr1:156437449-156438571	chr1:156437449-156437784;chr1:156438092-156438571		chr1:156437785-156438091			92.00	100.00	100.00	100.00	100.00	NA	97.56	94.87	100.00	100.00	100.00	NA	95.24	100.00	100.00	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.86	100.00	NA	100.00	95.00	91.18	93.48	93.02	100.00	98.78	97.44	-1.34	0.793708	0.936947
K	alternative_acceptor	SNRNP70	chr19	+	chr19:49610970-49611078	chr19:49610970-49611051		chr19:49611052-49611078	chr19:49611078-49611079		82.73	74.14	81.82	79.88	73.42	77.78	54.79	70.83	57.41	65.00	56.86	61.76	55.86	53.85	60.26	57.65	60.92	66.67	72.07	79.66	71.04	80.65	73.89	75.00	72.86	70.15	74.44	67.24	64.62	67.59	79.21	77.62	75.94	84.71	80.72	82.86	72.47	75.02	2.55	0.399641	0.716354
K	intron_retention	HSF1	chr8	+	chr8:145537575-145537647				chr8:145537574-145537575;chr8:145537647-145537648		6.25	13.79	13.33	5.77	6.35	2.17	0.00	0.00	0.00	0.00	2.63	0.00	0.00	2.13	1.82	0.00	0.00	0.00	4.26	9.52	6.35	6.67	6.67	0.00	15.22	9.38	2.13	0.00	0.00	3.57	10.00	9.43	12.07	3.12	5.13	13.04	8.16	7.82	-0.35	0.993430	1.000000
N	jcn_only_AA		chr2	+	chr2:241514046-241514459	chr2:241514046-241514446		chr2:241514447-241514459	chr2:241514459-241514460		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.67	92.59	100.00	93.75	93.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	86.96	97.67	94.92	93.55	100.00	100.00	0.00	0.666388	0.851814
K	jcn_only_AA	PRDX4,TCEAL4	chrX	+	chrX:102841220-102841581	chrX:102841220-102841576		chrX:102841577-102841581	chrX:102841581-102841582		91.67	86.11	90.91	85.71	94.29	NA	91.07	90.62	92.86	87.88	94.12	100.00	91.76	97.14	95.74	92.75	88.10	88.24	89.47	84.62	88.89	92.31	92.00	88.24	100.00	93.33	80.77	89.66	91.23	85.71	81.25	87.50	94.74	95.92	86.79	92.11	91.41	91.15	-0.27	0.450312	0.714089
K	alternative_acceptor	CRYZL1	chr21	-	chr21:34962112-34963467	chr21:34962228-34963467		chr21:34962112-34962227	chr21:34962111-34962112		100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	84.21	NA	100.00	NA	100.00	94.74	95.65	100.00	100.00	NA	100.00	100.00	0.00	0.373901	0.709013
K	jcn_only_AA	DCXR	chr17	-	chr17:79995418-79995506	chr17:79995424-79995506		chr17:79995418-79995423	chr17:79995417-79995418		NA	82.50	82.35	NA	82.61	92.86	83.64	100.00	90.91	85.71	94.74	80.00	96.43	85.71	95.83	95.12	88.89	90.91	85.11	100.00	90.91	86.36	92.86	93.33	93.55	100.00	90.48	91.67	100.00	87.50	92.86	84.00	90.62	90.91	84.21	88.00	87.87	100.00	12.13	0.090812	0.663989
N	alternative_donor	RPS8	chr1	+	chr1:45242387-45243285;chr1:45242412-45243285	chr1:45242447-45243285		chr1:45242387-45242411;chr1:45242412-45242446	chr1:45242386-45242387;chr1:45242411-45242412		84.85	90.71	91.22	93.43	91.54	92.59	92.40	95.56	92.00	90.42	90.95	92.44	92.87	92.00	91.76	92.31	91.41	92.67	92.73	86.25	91.39	88.43	89.39	83.87	95.44	88.24	91.22	90.83	90.10	90.97	82.95	83.12	86.35	90.08	90.37	90.83	92.56	87.25	-5.32	0.169184	0.563271
N	cassette	TMEM167A	chr5	-	chr5:82357731-82367181;chr5:82357731-82373139	chr5:82357731-82360826;chr5:82360937-82367181,chr5:82360937-82373139		chr5:82360827-82360936			90.91	72.22	94.87	NA	85.00	NA	94.44	90.32	89.66	92.16	91.55	91.49	94.74	96.77	90.00	97.30	91.89	91.89	80.00	92.50	90.24	88.00	88.57	96.30	NA	90.00	93.26	84.62	90.62	84.38	93.10	95.31	86.67	93.33	89.19	90.48	86.67	91.70	5.03	0.201316	0.709176
K	intron_retention		chrX	+	chrX:70517789-70518318				chrX:70517788-70517789;chrX:70518318-70518319		5.88	0.00	10.00	4.35	3.00	5.17	0.97	0.67	0.52	0.51	0.75	1.22	0.77	0.76	2.01	1.85	0.77	0.00	1.45	5.30	4.07	8.11	3.76	7.19	0.00	7.50	3.97	3.97	2.79	3.45	9.42	8.11	3.80	7.50	7.75	9.72	0.87	5.59	4.72	0.180253	1.000000
K	intron_retention	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31500689-31503143				chr6:31500688-31500689;chr6:31503143-31503144		25.93	23.77	31.78	37.50	20.34	28.57	5.68	14.63	12.16	13.51	9.80	8.51	8.18	16.28	17.28	13.27	7.89	11.86	17.95	28.05	15.73	38.46	34.18	53.85	30.95	28.99	25.00	28.89	31.25	20.00	36.36	34.75	21.69	46.67	29.73	48.60	19.82	26.99	7.17	0.747935	1.000000
K	jcn_only_AA	DNAJC4	chr11	+	chr11:63999437-63999865;chr11:63999437-63999981	chr11:63999437-63999901		chr11:63999866-63999901;chr11:63999902-63999981	chr11:63999901-63999902;chr11:63999981-63999982		100.00	95.08	96.00	100.00	100.00	89.47	97.73	100.00	91.67	93.75	96.77	93.75	97.14	91.67	90.00	100.00	100.00	85.71	100.00	100.00	94.59	93.75	90.70	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	97.52	100.00	2.48	0.994456	0.997956
K	intron_retention	RPL3	chr22	-	chr22:39709735-39710111				chr22:39709734-39709735;chr22:39710111-39710112		3.90	0.36	2.04	0.40	0.25	0.31	0.00	0.00	0.00	0.15	0.00	0.00	0.00	0.00	0.26	0.15	0.00	0.00	0.61	3.91	0.82	1.09	0.20	0.45	0.22	3.17	0.92	0.33	0.23	0.23	6.32	5.53	1.06	0.86	0.42	0.33	0.29	3.54	3.25	0.129076	1.000000
K	alternative_donor	IMMP2L,POLR2J	chr7	-	chr7:102116718-102119257	chr7:102116718-102119254		chr7:102119255-102119257	chr7:102119257-102119258		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	95.89	93.33	100.00	94.12	100.00	90.48	95.31	100.00	NA	100.00	96.43	100.00	94.74	100.00	100.00	97.78	100.00	100.00	92.86	93.33	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	ACTN4	chr19	+	chr19:39217744-39218585				chr19:39217743-39217744;chr19:39218585-39218586		17.88	15.38	15.88	5.88	5.08	NA	0.78	0.58	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.00	7.14	11.28	4.30	10.53	5.79	6.78	13.04	6.67	10.60	1.92	1.47	1.96	13.95	10.24	6.52	8.77	8.33	11.57	6.83	8.97	2.14	0.995166	1.000000
N	jcn_only_AA	PNKP	chr19	-	chr19:50369762-50370310;chr19:50369703-50370310	chr19:50369786-50370310		chr19:50369703-50369761;chr19:50369762-50369785	chr19:50369702-50369703;chr19:50369761-50369762		14.29	0.00	22.73	NA	NA	NA	5.88	NA	25.00	NA	0.00	NA	4.55	NA	18.18	NA	0.00	NA	NA	8.33	0.00	NA	16.67	NA	0.00	9.09	5.26	NA	NA	NA	25.00	11.76	0.00	0.00	0.00	13.33	0.00	11.69	11.69	0.045130	0.663989
N	alternative_donor	CPVL	chr7	-	chr7:29160688-29185736;chr7:29160688-29186044	chr7:29160688-29185956		chr7:29185737-29185956;chr7:29185957-29186044	chr7:29185956-29185957;chr7:29186044-29186045		2.83	3.37	3.66	4.00	3.66	NA	3.45	2.56	3.70	2.81	3.46	1.91	3.47	7.32	4.26	2.79	2.18	2.22	9.09	2.47	0.00	3.77	3.32	2.89	NA	5.36	3.77	3.09	3.45	2.82	2.67	2.73	3.57	3.52	3.08	3.76	3.47	2.75	-0.72	0.619337	0.824864
N	jcn_only_AD	GNB1	chr1	-	chr1:1718493-1718760;chr1:1718493-1718929	chr1:1718493-1718764		chr1:1718761-1718764;chr1:1718765-1718929	chr1:1718764-1718765;chr1:1718929-1718930		5.71	4.04	6.69	8.96	5.18	6.34	4.91	7.18	6.99	7.66	6.48	6.74	5.98	5.89	7.54	8.29	7.55	6.50	5.52	6.31	6.82	6.18	7.35	7.93	3.79	6.73	6.97	5.08	8.83	7.69	5.98	6.35	4.03	7.04	5.05	6.90	4.47	6.14	1.67	0.005905	0.184071
K	cassette	ISY1,ISY1-RAB43	chr3	-	chr3:128849480-128853674	chr3:128849480-128852916;chr3:128853039-128853674		chr3:128852917-128853038			100.00	100.00	100.00	93.75	100.00	100.00	100.00	97.44	97.30	91.84	94.34	93.94	100.00	100.00	97.67	94.74	96.61	93.75	100.00	100.00	97.44	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	98.28	100.00	100.00	97.30	97.62	100.00	100.00	0.00	0.174688	0.709176
N	alternative_donor	ADAM28	chr8	+	chr8:24200614-24201018	chr8:24200695-24201018		chr8:24200614-24200694	chr8:24200613-24200614		90.91	100.00	86.73	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	95.45	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	92.86	100.00	100.00	100.00	97.67	100.00	100.00	0.00	0.373901	0.650093
K	jcn_only_AA	WDR45	chrX	-	chrX:48933083-48933203;chrX:48933125-48933203	chrX:48933113-48933203		chrX:48933083-48933112;chrX:48933113-48933124	chrX:48933082-48933083;chrX:48933112-48933113		5.56	0.00	4.84	0.00	4.08	3.70	0.00	2.27	0.00	0.00	0.00	0.00	0.00	2.78	4.08	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	2.44	2.33	1.89	2.67	2.70	0.00	0.00	1.64	0.00	2.08	2.08	0.127618	0.663989
N	alternative_acceptor	PDAP1	chr7	-	chr7:98995637-98997925	chr7:98997651-98997925		chr7:98995637-98997650	chr7:98995636-98995637		3.03	3.51	4.63	0.00	0.91	0.00	0.00	0.00	1.00	0.56	0.00	0.00	0.61	0.00	0.85	0.68	0.48	0.00	3.70	2.56	1.04	2.38	2.52	3.37	6.06	1.35	1.89	1.02	0.87	0.93	1.52	2.78	3.28	1.98	3.12	2.80	3.39	1.44	-1.96	0.202912	0.668672
K	cassette	GOLGA5	chr14	+	chr14:93302010-93305710	chr14:93302010-93303730;chr14:93303795-93305710		chr14:93303731-93303794			85.71	100.00	90.70	90.00	92.59	NA	100.00	100.00	100.00	96.55	88.24	100.00	100.00	91.30	95.83	95.65	100.00	85.71	85.71	96.30	100.00	100.00	92.31	100.00	NA	94.29	97.37	88.89	94.74	95.00	92.86	93.33	100.00	100.00	92.86	94.44	100.00	93.58	-6.42	0.316325	0.709176
K	alternative_first_exon	CTD-2323K18.1	chr15	-	chr15:75819603-75890619	chr15:75819603-75871054	chr15:75890620-75891022	chr15:75871055-75871630			23.33	2.33	41.46	0.00	2.17	0.00	34.62	57.58	58.54	52.38	42.86	NA	41.67	65.52	60.61	50.00	55.32	NA	0.00	25.00	2.94	NA	19.23	NA	0.00	42.11	25.81	15.38	11.76	NA	11.76	18.18	0.00	26.92	34.29	27.78	1.17	33.55	32.39	0.064231	0.203003
K	intron_retention		chr9	-	chr9:35704172-35704328				chr9:35704171-35704172;chr9:35704328-35704329		4.26	3.50	6.61	0.00	3.57	NA	0.00	0.27	0.00	0.00	0.37	0.00	0.00	0.34	1.31	0.00	0.00	0.00	4.17	3.82	3.95	5.38	4.81	4.90	1.64	4.36	4.88	3.06	1.99	3.90	5.19	7.18	10.34	4.26	4.21	4.42	2.57	4.04	1.47	0.978668	1.000000
K	intron_retention	ARFGAP1	chr20	+	chr20:61909556-61910250				chr20:61909555-61909556;chr20:61910250-61910251		16.67	14.81	10.00	NA	0.00	NA	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	NA	8.33	0.00	15.00	12.50	12.12	0.00	0.00	0.00	0.00	0.00	0.00	14.29	15.79	NA	7.69	7.50	6.98	0.00	4.17	4.17	0.795407	1.000000
N	alternative_donor		chr19	-	chr19:58858396-58858792	chr19:58858396-58858718		chr19:58858719-58858792	chr19:58858792-58858793		100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	95.45	91.67	100.00	100.00	96.36	NA	99.11	NA	100.00	100.00	100.00	92.86	100.00	100.00	97.85	100.00	100.00	100.00	99.56	100.00	0.44	0.731351	0.890213
K	cassette	PEX16	chr11	-	chr11:45937855-45939008	chr11:45937855-45938524;chr11:45938693-45939008		chr11:45938525-45938692			3.70	0.00	8.70	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	3.45	0.00	4.55	7.69	0.00	0.00	2.78	0.00	5.00	0.00	2.94	2.44	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.178165	0.709176
K	intron_retention	WDR83	chr19	+	chr19:12783729-12783821				chr19:12783728-12783729;chr19:12783821-12783822		0.00	5.26	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	NA	0.00	13.33	3.33	NA	0.00	NA	0.00	8.33	0.00	NA	0.00	NA	0.00	6.06	5.71	0.00	4.55	0.00	0.00	4.17	4.17	0.647437	1.000000
K	intron_retention		chr10	-	chr10:102283687-102286155				chr10:102283686-102283687;chr10:102286155-102286156		4.72	3.60	7.43	2.68	1.57	2.87	0.00	0.00	1.00	0.00	0.42	0.00	0.78	0.00	0.83	0.43	0.41	0.00	2.38	2.25	2.19	2.65	2.50	4.07	8.76	2.78	4.60	3.25	2.63	0.92	2.44	4.62	2.65	3.31	3.43	2.53	2.51	2.34	-0.17	0.461863	1.000000
N	cassette	PEX16	chr11	-	chr11:45936236-45937777;chr11:45936236-45937253	chr11:45936236-45937018;chr11:45937120-45937777,chr11:45937120-45937253		chr11:45937019-45937119			100.00	89.29	100.00	92.86	89.19	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	90.00	90.70	100.00	100.00	100.00	100.00	100.00	94.12	100.00	88.46	100.00	86.05	85.71	82.93	100.00	100.00	94.44	94.73	100.00	5.27	0.559749	0.824117
K	cassette	MAPK3	chr16	-	chr16:30128325-30128990	chr16:30128325-30128474;chr16:30128607-30128990		chr16:30128475-30128606			90.24	87.76	98.08	80.00	89.47	NA	100.00	100.00	97.62	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.00	82.61	94.12	85.71	87.18	90.00	100.00	92.86	96.83	100.00	94.12	100.00	100.00	88.00	81.48	90.48	80.65	92.00	94.00	96.43	2.43	0.755860	0.923121
N	alternative_donor	DNTTIP1	chr20	+	chr20:44430695-44431971	chr20:44430697-44431971		chr20:44430695-44430696	chr20:44430694-44430695		100.00	100.00	95.45	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.12	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.650093
N	cassette	BCL2L2-PABPN1,PABPN1	chr14	+	chr14:23792693-23793346	chr14:23792693-23793173;chr14:23793262-23793346		chr14:23793174-23793261			92.31	100.00	97.14	95.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	95.74	100.00	98.25	98.13	98.00	100.00	93.10	97.10	100.00	100.00	100.00	74.19	89.23	92.98	95.65	96.15	95.31	100.00	94.42	-5.58	0.208290	0.709176
N	jcn_only_AA	MILR1	chr17	+	chr17:62463763-62464426;chr17:62463763-62492438;chr17:62463763-62488401;chr17:62463763-62471431	chr17:62463763-62469521		chr17:62464427-62469521;chr17:62469522-62471431;chr17:62471432-62488401;chr17:62488402-62492438	chr17:62469521-62469522;chr17:62471431-62471432;chr17:62488401-62488402;chr17:62492438-62492439		NA	0.00	NA	NA	0.00	0.00	2.08	2.50	3.23	0.00	0.00	0.00	8.33	3.45	0.00	0.00	11.76	0.00	0.00	0.00	5.26	NA	10.00	NA	0.00	6.25	4.35	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	2.98	2.98	0.504166	0.757893
K	intron_retention	CDK11A,RP1-283E3.8	chr1	-	chr1:1636095-1636342				chr1:1636094-1636095;chr1:1636342-1636343		44.00	44.44	43.75	NA	31.25	NA	8.33	16.67	0.00	NA	16.67	NA	NA	NA	NA	NA	23.08	NA	4.35	17.14	6.25	28.57	17.95	16.67	15.38	33.33	38.10	30.43	25.00	34.78	16.67	12.87	13.64	19.57	17.39	9.84	13.64	17.14	3.50	0.670653	1.000000
K	jcn_only_AD	USP5	chr12	+	chr12:6972473-6972993	chr12:6972542-6972993		chr12:6972473-6972541	chr12:6972472-6972473		NA	0.00	0.00	NA	4.55	NA	6.90	0.00	11.11	4.76	8.00	6.25	9.84	7.14	11.11	14.81	12.77	0.00	0.00	0.00	9.52	0.00	4.55	NA	8.33	9.09	8.00	NA	0.00	NA	NA	0.00	7.14	0.00	0.00	0.00	7.02	3.57	-3.45	0.672319	0.831179
N	coord_cassette	PPP2R3C	chr14	-	chr14:35564391-35568457	chr14:35564391-35565763;chr14:35565840-35565914;chr14:35565971-35568457		chr14:35565764-35565839;chr14:35565915-35565970			95.45	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	WBP2	chr17	-	chr17:73844012-73844650				chr17:73844011-73844012;chr17:73844650-73844651		4.00	3.45	5.63	0.00	3.33	NA	0.00	0.67	0.00	0.00	1.08	0.00	0.60	0.00	0.96	0.00	0.67	0.00	0.00	2.10	0.00	1.06	2.11	0.87	7.14	1.18	2.83	0.00	1.53	0.00	1.98	3.52	3.85	1.47	3.52	2.25	2.02	1.58	-0.44	0.863903	1.000000
N	alternative_acceptor		chr11	+	chr11:47336879-47343361;chr11:47336879-47345091	chr11:47336879-47345221		chr11:47343362-47345091;chr11:47345092-47345221	chr11:47345091-47345092;chr11:47345221-47345222		98.11	100.00	98.51	NA	100.00	NA	100.00	96.97	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.30	NA	NA	98.11	100.00	100.00	96.15	95.24	93.75	96.40	97.44	100.00	100.00	NA	98.36	98.57	100.00	97.78	97.67	96.77	100.00	98.11	-1.89	0.597063	0.846397
K	intron_retention	ARAP1	chr11	-	chr11:72407700-72408027				chr11:72407699-72407700;chr11:72408027-72408028		4.93	6.13	5.92	0.00	1.03	0.00	0.52	1.85	0.00	0.92	1.02	0.00	0.50	0.50	1.23	0.00	0.50	0.00	1.72	2.86	2.00	3.45	1.98	2.17	3.61	4.74	2.88	2.86	2.26	2.50	5.60	5.14	4.76	3.76	4.55	4.92	2.67	3.80	1.13	0.809161	1.000000
K	intron_retention	DUS1L	chr17	-	chr17:80016131-80016216				chr17:80016130-80016131;chr17:80016216-80016217		0.00	0.00	3.12	0.00	1.37	3.57	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.89	0.00	5.08	0.00	2.13	4.76	0.00	0.00	2.78	0.00	0.00	0.00	6.25	8.11	2.70	0.00	3.57	3.23	0.00	0.00	0.00	0.748326	1.000000
K	intron_retention	CLK1	chr2	-	chr2:201719419-201719726				chr2:201719418-201719419;chr2:201719726-201719727		4.32	0.00	3.91	0.00	0.75	1.43	0.00	0.00	2.56	0.00	0.00	3.33	0.00	0.00	1.85	2.50	0.00	0.00	1.52	3.42	1.12	3.77	1.28	5.76	4.00	2.60	3.25	0.00	2.86	1.89	2.73	4.35	3.66	4.05	3.30	6.01	0.76	2.67	1.91	0.894855	1.000000
N	alternative_donor	MYO18A,SLC25A35	chr17	-	chr17:27401933-27406744;chr17:27401933-27409333	chr17:27401933-27404045		chr17:27404046-27406744;chr17:27406745-27409333	chr17:27406744-27406745;chr17:27409333-27409334		4.00	3.64	3.92	NA	3.12	NA	3.12	3.57	4.55	7.14	5.56	0.00	6.82	5.88	4.00	6.25	5.71	NA	5.26	2.70	0.00	3.23	1.72	3.33	2.22	4.55	2.86	6.25	2.94	0.00	1.85	1.20	2.94	6.67	5.41	2.33	3.38	3.79	0.41	0.795669	0.925498
N	alternative_acceptor	SNX8	chr7	-	chr7:2296656-2296999	chr7:2296659-2296999		chr7:2296656-2296658	chr7:2296655-2296656		94.29	100.00	100.00	91.87	90.20	91.79	96.08	96.15	100.00	97.62	93.98	100.00	95.74	91.67	NA	94.44	93.48	88.89	94.59	92.68	96.97	92.54	96.34	91.89	100.00	100.00	100.00	93.65	91.76	90.32	100.00	88.89	93.24	94.85	91.89	90.28	95.91	95.22	-0.69	0.673200	0.880186
K	intron_retention	ATF5	chr19	+	chr19:50434286-50435678				chr19:50434285-50434286;chr19:50435678-50435679		17.60	21.62	20.51	48.00	18.18	67.13	8.82	17.67	18.70	1.99	4.23	2.50	8.20	16.88	22.33	7.27	2.92	5.21	46.67	17.42	43.90	10.42	7.48	8.94	44.83	19.05	19.51	12.20	11.84	14.98	47.37	27.27	37.93	17.02	8.41	19.30	29.77	17.64	-12.14	0.618143	1.000000
N	alternative_acceptor	DAP3,PLEKHO1	chr1	+	chr1:155706855-155707947;chr1:155706855-155707956	chr1:155706855-155707075		chr1:155707076-155707947;chr1:155707948-155707956	chr1:155707947-155707948;chr1:155707956-155707957		8.00	6.06	4.35	2.70	3.39	2.78	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	2.63	2.63	3.70	0.00	3.08	5.71	2.00	4.65	5.45	7.69	3.03	4.55	5.00	4.00	4.35	3.70	2.78	4.00	4.62	6.00	3.92	8.70	3.05	3.67	0.61	0.676200	0.880186
K	intron_retention		chr11	-	chr11:45937120-45937253				chr11:45937119-45937120;chr11:45937253-45937254		3.23	0.00	5.26	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.86	5.56	0.00	0.00	3.57	4.65	0.00	0.00	5.00	4.08	3.77	0.00	3.85	5.00	2.44	0.00	3.04	3.04	0.282691	1.000000
N	alternative_acceptor	DAZAP1	chr19	+	chr19:1418731-1421146;chr19:1418731-1419670	chr19:1418731-1421149		chr19:1419671-1421146;chr19:1421147-1421149	chr19:1421146-1421147;chr19:1421149-1421150		36.00	23.53	22.58	NA	50.00	NA	31.43	33.33	38.24	40.00	33.82	36.84	33.85	39.29	29.55	33.33	37.38	35.56	NA	14.29	30.77	25.00	26.47	20.00	NA	16.67	24.00	38.10	25.93	30.00	20.00	30.00	25.00	23.33	18.18	37.04	28.21	26.66	-1.55	0.724993	0.897400
K	intron_retention		chr12	-	chr12:51678572-51681891				chr12:51678571-51678572;chr12:51681891-51681892		4.00	3.23	5.77	0.00	6.15	NA	1.33	0.00	0.00	0.00	1.25	0.00	1.30	1.25	0.00	0.00	0.00	0.00	4.65	2.48	3.06	0.00	2.04	0.00	9.68	7.22	6.84	2.70	4.90	2.70	7.14	2.59	1.64	2.08	4.11	4.88	2.44	3.24	0.81	0.823791	1.000000
N	alternative_acceptor		chr22	+	chr22:38040968-38041408;chr22:38040968-38041338	chr22:38040968-38041371		chr22:38041339-38041371;chr22:38041372-38041408	chr22:38041371-38041372;chr22:38041408-38041409		100.00	90.48	96.08	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	98.00	NA	100.00	97.56	98.04	NA	100.00	NA	100.00	100.00	100.00	NA	97.62	NA	100.00	100.00	0.00	0.499955	0.791230
N	jcn_only_AD	UQCRC2	chr16	+	chr16:21987565-21991867	chr16:21990573-21991867		chr16:21987565-21990572	chr16:21987564-21987565		5.62	0.00	1.69	0.00	1.15	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	1.79	2.17	1.43	2.79	0.00	6.73	4.26	1.83	2.27	3.55	2.88	2.00	0.00	0.81	1.92	0.65	0.00	0.38	1.90	1.52	0.544086	0.764759
K	alternative_first_exon	PLEKHO1	chr1	+	chr1:150121977-150123101	chr1:150122478-150123101	chr1:150121373-150121976	chr1:150122170-150122477			98.10	94.74	95.95	100.00	100.00	95.45	97.96	99.35	97.03	100.00	100.00	100.00	94.12	98.16	96.25	100.00	96.00	97.73	96.15	98.70	96.67	100.00	97.44	96.67	100.00	98.04	96.15	97.37	100.00	100.00	98.48	98.67	95.65	97.22	95.00	98.18	95.90	98.32	2.42	0.072093	0.216279
N	alternative_donor	ADAM28	chr8	+	chr8:24201098-24207376;chr8:24201102-24207376	chr8:24205893-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		0.00	0.00	0.50	0.00	0.00	NA	0.00	3.70	2.78	3.85	0.00	15.56	0.00	0.00	5.26	0.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	1.69	NA	0.00	0.68	0.00	0.00	4.76	0.00	0.55	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.363217	0.650093
N	jcn_only_AA	RP11-421L21.3,RRNAD1	chr1	+	chr1:156705702-156706423	chr1:156705702-156706410		chr1:156706411-156706423	chr1:156706423-156706424		8.82	0.00	17.50	0.00	20.00	26.67	21.43	29.41	0.00	NA	NA	NA	0.00	11.11	25.00	NA	NA	NA	12.50	14.81	15.56	NA	15.79	NA	44.00	23.08	11.36	NA	35.29	NA	18.75	7.84	10.64	NA	16.67	8.33	11.57	16.78	5.21	0.707515	0.870427
N	alternative_acceptor	GUK1	chr1	+	chr1:228333326-228333736;chr1:228333326-228333713;chr1:228333326-228333587	chr1:228333326-228333726		chr1:228333588-228333713;chr1:228333714-228333726;chr1:228333727-228333736	chr1:228333713-228333714;chr1:228333726-228333727;chr1:228333736-228333737		94.57	96.34	94.38	96.39	97.33	95.08	98.56	96.39	99.05	98.80	99.50	99.14	98.69	98.80	97.09	99.16	99.10	98.90	97.58	94.74	96.85	95.00	96.49	97.10	98.36	94.38	93.33	97.22	97.46	93.55	93.55	91.45	96.91	97.03	95.04	94.96	97.97	94.66	-3.31	0.029932	0.556598
K	alternative_acceptor	GNAS	chr20	+	chr20:57474041-57478585	chr20:57474041-57478582		chr20:57478583-57478585	chr20:57478585-57478586		15.24	9.80	13.79	8.00	12.16	10.00	7.16	8.64	9.40	7.08	6.54	7.41	6.39	7.18	7.96	6.60	8.57	8.17	12.50	15.79	13.79	10.00	11.65	10.49	24.00	12.00	13.41	12.50	11.29	8.82	13.51	14.29	6.67	14.04	13.86	11.74	8.48	12.75	4.27	0.762355	0.912836
N	cassette	CRTC2	chr1	-	chr1:153925311-153926013	chr1:153925311-153925741;chr1:153925846-153926013		chr1:153925742-153925845			87.23	75.00	90.65	NA	NA	NA	95.83	93.94	95.00	92.00	100.00	88.89	91.67	93.33	95.45	90.00	100.00	93.33	NA	100.00	NA	100.00	90.00	76.47	100.00	91.89	86.36	81.82	100.00	NA	100.00	100.00	NA	89.66	85.71	90.32	93.75	93.63	-0.12	0.554767	0.821423
K	intron_retention	ACP2	chr11	-	chr11:47267124-47267232				chr11:47267123-47267124;chr11:47267232-47267233		4.00	0.00	4.09	0.00	0.00	NA	0.00	0.59	0.17	0.00	0.30	0.00	0.00	0.64	0.85	1.04	0.00	0.00	13.33	3.03	3.37	1.59	2.52	4.41	0.00	1.45	2.49	0.00	3.61	1.85	2.98	4.22	0.00	1.85	4.90	2.37	0.00	2.21	2.21	0.982922	1.000000
N	cassette	HCFC1R1	chr16	-	chr16:3073363-3073684;chr16:3073363-3073847	chr16:3073363-3073474;chr16:3073532-3073684,chr16:3073532-3073847		chr16:3073475-3073531			82.76	88.61	73.81	72.00	70.42	68.29	85.00	84.21	90.00	81.82	81.82	82.86	91.04	85.71	80.77	86.96	85.71	89.66	83.64	NA	69.61	57.14	74.47	70.00	71.79	NA	73.68	74.07	77.11	82.93	69.23	72.22	83.33	76.47	70.00	80.77	84.32	83.48	-0.83	0.491307	0.776514
K	alternative_first_exon	TSPAN4	chr11	+	chr11:844187-850287;chr11:842916-850287	chr11:847301-850287	chr11:844081-844186;chr11:842808-842915	chr11:847170-847300			80.65	90.60	89.23	96.00	91.58	95.45	97.51	97.22	94.55	95.09	97.57	97.32	96.46	96.00	94.29	97.30	97.00	96.97	91.25	85.71	92.86	93.65	92.19	92.94	96.72	89.47	90.54	94.12	94.08	96.34	93.48	91.07	87.62	92.78	91.18	95.24	93.85	91.47	-2.38	0.369528	0.548133
K	alternative_last_exon	SUMF1	chr3	-	chr3:4346287-4418013,chr3:4393316-4418013;chr3:4110430-4418013	chr3:4403939-4418013	chr3:4110253-4110429	chr3:4402830-4403938			100.00	100.00	100.00	100.00	99.07	95.83	99.32	100.00	100.00	95.52	99.27	100.00	95.29	83.33	94.59	93.33	98.51	83.33	100.00	100.00	97.06	100.00	100.00	100.00	100.00	94.44	98.00	97.14	99.03	100.00	94.12	100.00	98.70	96.59	100.00	100.00	99.66	97.22	-2.44	0.245057	0.458097
N	alternative_acceptor	PGS1	chr17	+	chr17:76415757-76419272;chr17:76415757-76420141	chr17:76415757-76416294		chr17:76416295-76419272;chr17:76419273-76420141	chr17:76419272-76419273;chr17:76420141-76420142		41.38	16.13	42.98	26.09	11.11	23.81	14.29	20.83	13.70	21.74	16.67	33.33	25.00	20.69	29.70	35.00	NA	46.15	6.67	44.12	11.67	64.00	27.59	60.00	NA	31.11	31.11	36.36	20.00	42.55	25.81	29.41	4.76	42.86	53.33	62.39	14.29	28.46	14.17	0.011959	0.475629
K	intron_retention	IRF5	chr7	+	chr7:128587361-128587390				chr7:128587360-128587361;chr7:128587390-128587391		70.97	90.91	84.62	NA	NA	NA	70.91	78.38	81.82	80.95	77.53	79.03	33.90	35.34	30.51	41.60	38.10	46.81	50.00	38.96	NA	37.50	43.28	38.79	0.00	0.00	0.00	0.00	0.00	0.00	36.59	36.36	NA	38.60	25.58	38.46	50.00	37.78	-12.22	0.968996	1.000000
K	jcn_only_AA	MRPS11	chr15	+	chr15:89011014-89011141	chr15:89011014-89011138		chr15:89011139-89011141	chr15:89011141-89011142		80.00	90.00	68.57	76.47	70.00	78.26	76.92	63.64	72.97	61.54	68.75	78.95	70.73	76.92	64.29	70.59	67.86	60.00	72.22	56.25	68.52	80.95	55.88	81.82	100.00	73.33	82.14	68.18	75.68	78.57	76.47	66.67	70.00	70.59	75.00	71.43	74.57	74.90	0.33	0.189526	0.663989
N	jcn_only_AA	AP1B1	chr22	-	chr22:29782977-29784412;chr22:29765379-29784412;chr22:29763260-29784412	chr22:29763257-29784412		chr22:29763257-29763259;chr22:29763260-29765378;chr22:29765379-29782976	chr22:29763256-29763257;chr22:29763259-29763260;chr22:29765378-29765379		0.00	3.12	1.67	NA	NA	NA	1.02	1.63	2.47	0.80	1.17	0.68	1.12	0.96	1.90	1.56	0.50	1.40	0.00	2.17	NA	7.69	2.14	4.65	0.00	2.13	0.00	0.00	1.25	6.25	0.00	3.03	0.00	4.00	0.79	1.28	0.51	1.29	0.78	0.681081	0.857722
K	cassette	RUFY1	chr5	+	chr5:179034661-179036376	chr5:179034661-179035285;chr5:179035467-179036376		chr5:179035286-179035466			0.00	1.46	2.27	0.00	0.70	1.49	1.92	0.00	2.44	0.00	2.53	0.00	1.92	3.12	0.00	0.00	1.20	0.00	0.00	4.17	1.94	2.56	2.00	5.26	2.63	6.67	1.41	2.78	2.02	1.56	3.64	3.30	1.05	2.63	2.22	2.75	1.69	3.38	1.69	0.243617	0.709176
K	intron_retention	USP19	chr3	-	chr3:49145962-49147616				chr3:49145961-49145962;chr3:49147616-49147617		7.89	7.79	6.98	0.00	4.35	13.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.03	7.14	4.88	16.67	2.70	NA	0.00	5.00	6.06	0.00	8.33	3.23	5.88	5.26	2.94	9.52	13.64	9.68	1.47	5.44	3.97	0.989563	1.000000
N	jcn_only_AD	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139918669-139921756	chr5:139919012-139921756		chr5:139918669-139919011	chr5:139918668-139918669		0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	5.56	0.00	8.70	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.175513	0.657607
K	intron_retention	CLN3,RP11-435I10.4	chr16	-	chr16:28493520-28493647				chr16:28493519-28493520;chr16:28493647-28493648		6.33	7.06	0.00	5.88	9.68	1.75	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	3.23	5.75	4.69	7.46	3.57	8.70	6.52	10.94	6.90	7.14	9.76	12.90	10.00	3.64	5.56	6.49	3.57	7.41	5.61	6.12	4.17	-1.96	0.781728	1.000000
K	cassette	SUMF2	chr7	+	chr7:56141912-56144526;chr7:56140805-56144526	chr7:56140805-56142278,chr7:56141912-56142278;chr7:56142430-56144526		chr7:56142279-56142429			100.00	91.89	98.31	100.00	97.67	NA	97.39	97.37	99.06	97.47	96.18	97.80	96.88	100.00	96.43	96.47	97.03	96.97	96.77	93.75	93.55	97.62	95.00	98.41	100.00	100.00	92.98	94.87	100.00	95.83	100.00	97.78	100.00	98.44	97.62	96.15	97.13	100.00	2.87	0.414638	0.727796
K	intron_retention	TINF2	chr14	-	chr14:24709138-24709269				chr14:24709137-24709138;chr14:24709269-24709270		84.48	85.00	92.21	85.88	90.83	81.61	92.86	92.49	93.18	94.20	92.73	92.31	91.67	92.59	92.77	90.32	86.27	90.28	91.55	92.93	87.50	92.11	89.91	93.94	86.67	92.77	95.45	95.45	90.18	90.61	92.25	95.35	90.91	94.38	87.88	92.31	91.23	92.54	1.31	0.720069	1.000000
N	jcn_only_AA	ARHGAP27	chr17	-	chr17:43473947-43474033	chr17:43473952-43474033		chr17:43473947-43473951	chr17:43473946-43473947		91.43	87.50	95.83	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	99.09	95.65	100.00	96.30	95.45	NA	100.00	NA	NA	100.00	94.12	92.86	98.36	100.00	NA	100.00	100.00	94.74	100.00	NA	NA	100.00	97.62	96.43	98.72	2.29	0.548364	0.782674
N	jcn_only_AD	COMMD1	chr2	+	chr2:62115720-62227835;chr2:62115978-62227835	chr2:62132994-62227835		chr2:62115720-62115977;chr2:62115978-62132993	chr2:62115719-62115720;chr2:62115977-62115978		100.00	93.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.183026	0.657607
K	jcn_only_AA	SRSF10	chr1	-	chr1:24298114-24298339	chr1:24298117-24298339		chr1:24298114-24298116	chr1:24298113-24298114		88.00	90.48	76.79	85.71	78.95	76.92	83.72	77.78	77.55	79.44	78.08	77.53	79.10	82.35	77.42	83.62	85.71	82.81	73.33	84.38	86.36	84.38	88.57	77.14	80.00	71.43	87.50	84.85	81.58	80.00	83.33	86.96	70.59	82.14	87.18	91.04	79.55	82.84	3.29	0.666384	0.851814
K	intron_retention	CTNNB1	chr3	+	chr3:41280846-41281150				chr3:41280845-41280846;chr3:41281150-41281151		69.92	57.14	68.15	55.56	46.94	46.43	50.52	51.00	52.87	44.37	40.91	48.61	54.62	48.91	55.94	53.28	53.85	52.66	53.12	70.00	55.56	68.67	60.17	75.25	34.62	66.41	58.12	51.39	47.25	55.66	70.87	68.00	68.42	69.05	63.75	69.90	53.87	68.16	14.29	0.451353	1.000000
N	alternative_acceptor	RPS4Y1	chrY	+	chrY:2713785-2722640	chrY:2713785-2721588		chrY:2721589-2722640	chrY:2722640-2722641		8.43	2.60	10.37	6.45	4.63	2.65	0.43	2.38	3.17	0.00	0.92	0.46	0.97	2.50	4.05	2.03	1.25	0.51	2.80	9.84	5.31	12.70	8.52	10.00	1.30	16.98	8.92	15.38	7.54	8.40	6.15	4.86	1.37	8.33	9.95	8.27	1.33	7.29	5.96	0.039686	0.560254
N	cassette	MTMR14	chr3	+	chr3:9730767-9739435;chr3:9730767-9739394;chr3:9730767-9743473	chr3:9730767-9731647;chr3:9731828-9743473,chr3:9731828-9739394,chr3:9731828-9739435		chr3:9731648-9731827			55.10	68.14	57.58	66.67	67.37	62.96	83.75	79.59	80.43	80.85	81.33	100.00	79.45	77.36	70.37	79.22	81.54	92.00	63.29	62.00	60.87	64.29	69.16	67.74	67.86	74.51	69.77	71.43	71.88	74.19	64.91	60.44	53.97	67.61	63.37	72.88	68.00	69.71	1.71	0.934787	0.983723
N	jcn_only_AD	SAE1	chr19	+	chr19:47708517-47712415;chr19:47706998-47712415	chr19:47708387-47712415		chr19:47706998-47708386;chr19:47708387-47708516	chr19:47706997-47706998;chr19:47708386-47708387		0.00	0.00	5.17	0.00	0.00	NA	0.00	4.55	0.00	0.00	0.00	0.00	3.90	0.00	0.00	0.00	6.25	0.00	0.00	8.11	0.00	9.52	4.76	11.11	NA	4.55	7.32	6.67	1.85	0.00	5.88	11.43	0.00	8.89	1.75	0.00	0.00	4.55	4.55	0.082034	0.629777
K	intron_retention	ANAPC5	chr12	-	chr12:121756228-121756303				chr12:121756227-121756228;chr12:121756303-121756304		16.13	14.00	15.56	7.14	1.64	30.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	2.86	8.11	1.54	0.00	14.63	10.53	9.30	9.09	7.23	17.65	11.11	NA	7.89	0.00	6.00	15.79	20.00	24.32	10.00	5.41	6.12	10.00	10.55	10.53	-0.03	0.734044	1.000000
K	jcn_only_AA	KIAA0368	chr9	-	chr9:114124334-114132714	chr9:114131454-114132714		chr9:114124334-114131453	chr9:114124333-114124334		100.00	80.95	100.00	83.33	85.92	66.15	100.00	100.00	100.00	97.22	100.00	95.16	100.00	100.00	100.00	100.00	100.00	100.00	88.24	100.00	86.54	90.38	93.33	93.15	69.23	100.00	92.16	93.75	100.00	89.80	90.62	92.45	72.41	100.00	100.00	95.61	84.59	100.00	15.41	0.058011	0.663989
K	jcn_only_AA	HDAC10,MAPK12	chr22	-	chr22:50687884-50688063	chr22:50687946-50688063		chr22:50687884-50687945	chr22:50687883-50687884		11.11	0.00	9.09	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	8.33	0.00	8.33	0.00	NA	0.00	7.14	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.183579	0.663989
K	intron_retention	SGSH	chr17	-	chr17:78188565-78188831				chr17:78188564-78188565;chr17:78188831-78188832		8.33	0.00	6.90	NA	NA	NA	0.00	3.57	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	NA	7.69	NA	10.00	4.35	6.67	0.00	8.70	5.56	NA	8.33	NA	4.76	11.11	NA	6.90	14.29	0.00	0.00	6.22	6.22	0.090879	1.000000
K	intron_retention	DNAJB12	chr10	-	chr10:74094376-74095537				chr10:74094375-74094376;chr10:74095537-74095538		33.33	14.29	34.78	20.00	15.25	15.05	30.43	25.71	31.43	18.42	14.71	12.90	23.08	21.62	27.66	25.58	20.00	10.00	14.06	14.71	22.03	24.00	27.03	25.00	17.31	23.33	23.40	29.63	38.89	18.18	23.33	20.41	17.31	19.44	20.45	20.93	17.31	23.33	6.02	0.240913	1.000000
K	intron_retention		chr17	+	chr17:41165680-41165792				chr17:41165679-41165680;chr17:41165792-41165793		2.94	3.53	6.38	5.88	4.26	2.68	0.00	0.34	0.42	0.00	0.00	0.79	0.00	0.97	1.31	1.55	2.44	0.99	0.00	2.24	0.85	5.13	7.89	5.45	0.00	1.85	4.17	6.15	2.27	2.46	3.35	4.76	4.62	8.05	3.23	4.31	0.00	2.04	2.04	0.893494	1.000000
N	jcn_only_AA	PDXDC1,TAOK2	chr16	+	chr16:30001127-30002104	chr16:30001127-30001863		chr16:30001864-30002104	chr16:30002104-30002105		0.00	0.00	9.09	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	11.76	NA	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	14.29	0.00	0.00	0.00	0.391002	0.663989
N	cassette	NOP56	chr20	+	chr20:2636861-2637419;chr20:2636189-2637419	chr20:2636861-2637046,chr20:2636189-2637046;chr20:2637196-2637419		chr20:2637047-2637195			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	CHRNA6	chr8	-	chr8:62546287-62550518	chr8:62546287-62550505		chr8:62550506-62550518	chr8:62550518-62550519		100.00	100.00	100.00	NA	100.00	NA	98.81	100.00	100.00	100.00	99.35	100.00	99.39	97.50	97.83	98.98	98.12	96.20	100.00	100.00	100.00	100.00	95.00	100.00	NA	97.06	100.00	95.00	100.00	NA	100.00	100.00	NA	100.00	100.00	94.34	99.69	100.00	0.31	0.500445	0.739810
N	alternative_acceptor	FCN1	chr9	-	chr9:137802828-137802978;chr9:137801847-137802978	chr9:137801892-137802978		chr9:137801847-137801891;chr9:137801892-137802827	chr9:137801846-137801847;chr9:137801891-137801892		94.44	96.27	NA	100.00	98.97	100.00	98.50	100.00	99.09	98.00	98.63	98.03	98.39	100.00	100.00	97.50	98.96	97.30	96.81	95.38	100.00	98.00	98.34	97.46	96.72	100.00	100.00	100.00	100.00	100.00	96.25	100.00	95.91	97.57	96.86	98.09	96.77	98.12	1.36	0.632241	0.859182
N	jcn_only_AA	CLASRP	chr19	+	chr19:45572507-45573201;chr19:45572507-45572893	chr19:45572507-45573279		chr19:45572894-45573201;chr19:45573202-45573279	chr19:45573201-45573202;chr19:45573279-45573280		100.00	99.39	96.30	97.89	97.83	98.36	100.00	92.31	90.48	100.00	93.75	100.00	95.24	100.00	96.55	100.00	100.00	100.00	98.02	98.61	97.55	100.00	94.59	100.00	98.06	96.15	97.73	96.77	95.35	98.36	98.53	97.16	98.85	100.00	98.48	97.94	98.45	98.57	0.11	0.646082	0.842288
K	cassette	CACNA2D4	chr12	-	chr12:1910285-1919443	chr12:1910285-1910739;chr12:1910811-1919443		chr12:1910740-1910810			15.38	50.00	37.50	NA	30.00	NA	32.56	NA	50.00	30.77	25.00	42.86	35.06	41.67	NA	37.84	23.26	33.33	23.53	35.71	38.46	NA	20.00	26.67	54.55	36.36	30.30	23.53	31.43	26.67	NA	41.67	33.33	42.11	50.00	20.83	34.20	36.03	1.84	0.459886	0.758080
K	intron_retention	H3F3B	chr17	-	chr17:73774964-73775742				chr17:73774963-73774964;chr17:73775742-73775743		91.01	88.55	89.63	92.31	94.47	94.52	84.07	84.45	84.40	74.68	100.00	74.57	85.78	84.87	84.38	84.26	100.00	100.00	89.47	82.73	86.17	76.18	73.48	69.83	100.00	88.08	89.29	74.13	73.84	75.95	86.45	85.25	92.08	81.48	87.97	87.74	89.01	85.66	-3.35	0.550712	1.000000
K	alternative_acceptor	HMG20B	chr19	+	chr19:3573799-3574380;chr19:3573799-3573900;chr19:3573799-3574367	chr19:3573799-3574338		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		5.71	3.57	2.86	5.88	3.45	NA	1.35	2.38	2.38	1.72	1.54	2.17	1.43	4.17	4.55	0.00	2.94	0.00	0.00	4.17	3.57	4.76	3.57	5.56	2.78	4.55	9.09	3.85	4.17	0.00	4.35	3.77	4.76	7.89	6.90	5.41	2.10	4.26	2.15	0.048950	0.570243
K	cassette	COMMD4	chr15	+	chr15:75630475-75630986	chr15:75630475-75630695;chr15:75630762-75630986		chr15:75630696-75630761			93.75	93.57	91.30	91.89	93.14	92.31	96.97	86.96	95.56	97.14	97.83	100.00	96.58	93.75	91.30	97.01	92.19	96.77	95.79	92.50	94.32	93.55	97.73	100.00	97.56	94.44	95.65	100.00	94.55	96.77	92.06	92.06	92.13	95.83	93.98	97.18	96.19	93.12	-3.06	0.049361	0.564065
N	coord_cassette	LAMP1	chr13	+	chr13:113951811-113973783	chr13:113951811-113960799;chr13:113960922-113963957;chr13:113964178-113973783		chr13:113960800-113960921;chr13:113963958-113964177			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	99.31	100.00	100.00	100.00	100.00	98.73	100.00	NA	98.70	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.25	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	C19orf25	chr19	-	chr19:1475258-1478772				chr19:1475257-1475258;chr19:1478772-1478773		18.18	5.00	12.50	9.09	11.76	NA	5.00	9.09	0.00	0.00	4.76	0.00	3.33	4.35	3.57	3.57	0.00	NA	NA	18.18	8.33	NA	23.53	NA	0.00	0.00	23.08	0.00	5.26	11.76	26.32	17.65	16.67	18.75	13.33	25.00	5.00	13.63	8.63	0.902202	1.000000
N	alternative_acceptor	MRPL20	chr1	-	chr1:1337982-1341188;chr1:1337806-1341188;chr1:1337631-1341188	chr1:1337637-1341188		chr1:1337631-1337636;chr1:1337637-1337805;chr1:1337806-1337981	chr1:1337630-1337631;chr1:1337636-1337637;chr1:1337805-1337806		88.89	93.49	87.32	91.21	91.56	89.63	97.83	100.00	93.94	95.56	98.33	100.00	96.49	100.00	92.50	98.36	98.68	100.00	94.96	94.87	93.75	90.48	88.00	90.00	93.33	92.86	95.08	93.18	93.75	90.91	86.00	88.16	92.97	88.52	91.89	88.89	94.22	93.87	-0.36	0.678318	0.880186
K	jcn_only_AD	FXYD5	chr19	+	chr19:35645713-35646453	chr19:35645773-35646453		chr19:35645713-35645772	chr19:35645712-35645713		7.42	4.98	8.03	5.29	6.88	6.94	6.22	4.93	5.00	5.99	6.45	4.77	6.81	4.43	5.26	8.70	7.35	4.51	6.79	5.73	5.68	8.13	6.47	6.16	8.30	7.69	8.43	9.36	10.58	6.59	4.21	6.45	6.58	9.09	8.47	5.24	6.69	5.33	-1.36	0.274186	0.657607
N	cassette	EVA1B	chr1	-	chr1:36788327-36789059	chr1:36788327-36788571;chr1:36788669-36789059		chr1:36788572-36788668			75.68	71.43	75.76	85.71	78.46	75.86	94.34	94.23	93.94	86.36	97.22	NA	91.67	93.10	88.57	100.00	100.00	100.00	78.69	75.00	90.62	NA	73.02	NA	78.26	100.00	76.67	84.62	80.60	80.95	88.24	86.67	74.63	NA	100.00	NA	78.47	90.67	12.19	0.299688	0.709176
K	cassette	APH1B	chr15	+	chr15:63578828-63594543	chr15:63578828-63579622;chr15:63579746-63594543		chr15:63579623-63579745			87.80	87.10	87.18	86.67	90.70	86.67	93.10	93.10	94.83	81.25	85.29	78.57	96.15	88.89	90.24	90.91	83.33	NA	91.30	89.66	78.85	91.67	83.78	80.00	65.22	90.91	81.82	85.71	87.88	83.33	90.32	81.54	73.08	86.96	89.29	84.62	89.20	89.99	0.79	0.306096	0.709176
K	jcn_only_AA	ACTN4	chr19	+	chr19:39191355-39220628	chr19:39191355-39191641		chr19:39191642-39220628	chr19:39220628-39220629		98.33	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.44	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	82.61	83.33	93.55	97.75	76.92	100.00	98.21	100.00	100.00	100.00	0.00	0.525279	0.766267
N	cassette	PMM1	chr22	-	chr22:41980063-41980530	chr22:41980063-41980284;chr22:41980377-41980530		chr22:41980285-41980376			84.62	100.00	80.00	NA	81.82	NA	100.00	92.86	100.00	NA	100.00	NA	100.00	100.00	88.89	NA	94.44	NA	NA	90.91	84.62	NA	NA	NA	NA	100.00	100.00	NA	100.00	NA	90.00	100.00	100.00	NA	NA	NA	100.00	91.88	-8.12	0.037161	0.487338
K	intron_retention	PLD2	chr17	+	chr17:4722878-4725087				chr17:4722877-4722878;chr17:4725087-4725088		14.29	10.53	16.67	NA	2.50	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	NA	4.76	NA	10.53	15.79	13.33	NA	8.82	10.00	0.00	20.00	11.43	NA	5.00	NA	12.50	18.60	6.25	13.04	10.87	11.76	3.12	14.29	11.16	0.453955	1.000000
K	alternative_acceptor	TKFC	chr11	+	chr11:61113419-61120331;chr11:61113419-61113766	chr11:61113419-61113822		chr11:61113767-61113822;chr11:61113823-61120331	chr11:61113822-61113823;chr11:61120331-61120332		96.61	98.45	91.76	92.23	87.29	85.39	94.74	91.30	95.08	91.18	91.07	95.45	91.49	83.82	84.48	95.00	86.49	92.86	93.02	91.94	92.00	89.86	96.15	89.66	97.92	75.00	94.74	83.64	93.75	95.83	96.26	90.48	94.81	95.33	96.35	93.86	94.78	91.62	-3.16	0.148874	0.651394
N	alternative_acceptor	PCNXL3	chr11	+	chr11:65403275-65403401;chr11:65403275-65403644	chr11:65403275-65403421		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		18.75	8.33	17.39	NA	10.00	NA	0.00	6.25	5.88	0.00	9.09	NA	0.00	0.00	8.00	NA	9.09	NA	10.00	6.67	18.18	NA	5.56	NA	NA	12.00	14.29	NA	18.18	NA	13.33	14.29	0.00	NA	15.38	16.67	0.00	9.34	9.34	0.130503	0.625081
K	intron_retention	PILRA	chr7	+	chr7:99965241-99971203				chr7:99965240-99965241;chr7:99971203-99971204		100.00	100.00	96.56	100.00	97.94	100.00	98.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	95.10	100.00	93.46	92.59	96.30	95.21	100.00	95.10	93.75	100.00	97.43	96.35	100.00	94.74	100.00	97.15	95.64	100.00	100.00	100.00	97.73	100.00	98.72	-1.28	0.741957	1.000000
N	jcn_only_AA	SETX	chr9	-	chr9:135150243-135150642;chr9:135147196-135150642	chr9:135150246-135150642		chr9:135147196-135150242;chr9:135150243-135150245	chr9:135147195-135147196;chr9:135150242-135150243		0.00	0.00	0.00	NA	0.00	NA	0.00	3.51	0.00	0.00	0.00	0.00	2.00	3.70	0.00	0.00	8.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.380084	0.663989
K	jcn_only_AA	DDX39A	chr19	-	chr19:14521949-14522317	chr19:14521985-14522317		chr19:14521949-14521984	chr19:14521948-14521949		100.00	100.00	90.32	100.00	95.24	NA	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	88.89	91.30	88.24	85.00	95.56	97.62	93.02	100.00	100.00	0.00	0.794854	0.910039
K	alternative_donor	METTL23	chr17	+	chr17:74729460-74729602	chr17:74729464-74729602		chr17:74729460-74729463	chr17:74729459-74729460		0.00	3.92	4.26	4.00	6.78	5.26	0.00	0.00	12.00	0.00	2.63	0.00	2.56	0.00	8.00	0.00	5.26	NA	3.45	13.33	0.00	3.70	3.23	9.09	0.00	0.00	2.22	0.00	4.08	0.00	9.52	2.86	3.03	8.70	0.00	11.76	2.79	0.00	-2.79	0.543869	0.780071
N	alternative_donor	PVRL2	chr19	+	chr19:45377736-45385467;chr19:45383359-45385467	chr19:45381677-45385467		chr19:45377736-45381676;chr19:45381677-45383358	chr19:45377735-45377736;chr19:45381676-45381677		6.18	4.65	6.29	9.76	7.14	6.45	2.27	4.97	4.12	3.57	3.08	4.04	5.56	5.52	5.12	6.15	2.70	2.08	11.11	5.43	5.92	11.63	6.52	5.83	NA	5.13	5.86	11.48	7.32	9.13	10.20	3.22	6.25	12.70	9.09	11.48	5.56	5.47	-0.08	0.875803	0.969355
K	jcn_only_AD	AIF1	chr6	+	chr6:31583071-31583297	chr6:31583132-31583297		chr6:31583071-31583131	chr6:31583070-31583071		83.92	87.59	80.78	87.29	87.23	88.15	87.01	87.56	80.52	89.60	86.78	87.90	87.17	87.31	82.83	87.06	84.22	87.13	78.47	80.17	77.69	82.19	81.42	87.75	85.71	85.96	84.46	86.89	84.70	85.83	79.06	75.44	79.53	88.11	85.42	85.43	86.36	84.94	-1.42	0.913701	0.958253
N	alternative_donor	DENND3	chr8	+	chr8:142202763-142204131	chr8:142203057-142204131		chr8:142202763-142203056	chr8:142202762-142202763		6.00	2.04	7.69	0.00	0.00	0.85	0.00	3.12	0.00	NA	0.00	0.00	6.67	0.00	5.00	NA	0.00	4.55	1.32	5.56	1.85	NA	0.00	5.26	1.79	4.65	6.41	10.53	NA	3.12	6.90	9.80	1.39	6.67	NA	9.09	1.59	5.11	3.52	0.148790	0.563084
N	alternative_donor	HNRNPA2B1	chr7	-	chr7:26230749-26231920;chr7:26230749-26231041;chr7:26230749-26232114	chr7:26230749-26231218		chr7:26231042-26231218;chr7:26231219-26231920;chr7:26231921-26232114	chr7:26231218-26231219;chr7:26231920-26231921;chr7:26232114-26232115		8.50	3.91	9.09	6.01	6.29	40.29	48.98	39.23	39.36	26.20	51.04	50.74	13.82	37.50	42.67	24.48	27.59	51.18	10.03	4.38	7.67	7.98	4.09	24.48	45.04	5.84	32.36	14.46	10.34	14.33	6.71	2.12	4.36	6.71	4.56	15.82	11.93	7.61	-4.32	0.718572	0.885082
K	cassette	ODF3B	chr22	-	chr22:50969725-50970397	chr22:50969725-50969998;chr22:50970203-50970397		chr22:50969999-50970202			80.00	63.64	83.33	NA	NA	NA	NA	100.00	85.00	NA	NA	NA	88.24	97.22	96.43	NA	81.82	NA	54.55	82.86	83.33	NA	80.00	NA	NA	88.46	83.78	NA	76.92	90.00	90.32	86.36	54.55	NA	NA	100.00	59.09	89.39	30.29	0.045975	0.538787
K	intron_retention		chr1	-	chr1:160651259-160654676				chr1:160651258-160651259;chr1:160654676-160654677		1.40	0.00	1.51	2.25	1.54	4.79	0.00	0.37	0.00	0.67	0.00	0.67	0.00	0.84	1.08	0.39	1.08	0.37	0.00	1.75	1.49	1.12	1.25	5.54	0.00	1.40	1.23	2.21	1.94	1.75	0.83	1.09	0.00	3.52	1.73	5.64	0.00	1.12	1.12	0.011723	1.000000
K	intron_retention	FAM134A	chr2	+	chr2:220047031-220047135				chr2:220047030-220047031;chr2:220047135-220047136		98.04	100.00	98.00	NA	100.00	NA	84.21	87.76	92.31	93.33	94.64	100.00	95.45	91.67	93.75	91.89	93.22	66.67	100.00	92.86	95.00	93.75	97.56	NA	100.00	90.48	95.24	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	93.75	100.00	92.27	-7.73	0.374273	1.000000
N	alternative_acceptor	LRP1	chr12	+	chr12:121666670-121666836	chr12:121666670-121666765		chr12:121666766-121666836	chr12:121666836-121666837		91.59	100.00	90.48	89.09	96.97	100.00	100.00	98.93	100.00	98.45	100.00	98.40	100.00	100.00	97.26	96.75	98.60	99.32	100.00	96.12	100.00	91.49	95.96	91.78	NA	99.08	100.00	95.18	97.40	98.00	95.24	92.98	100.00	89.29	93.18	93.79	100.00	97.53	-2.47	0.057385	0.570243
K	alternative_donor	PPP4C	chr16	+	chr16:30087416-30087635	chr16:30087422-30087635		chr16:30087416-30087421	chr16:30087415-30087416		10.31	7.29	13.39	11.11	7.32	3.23	8.51	13.74	11.86	12.08	12.00	12.00	7.43	13.22	11.97	11.24	9.95	9.35	7.41	13.41	12.26	12.00	8.76	9.52	3.23	9.80	10.78	8.82	8.00	11.49	17.44	17.53	11.11	8.06	12.07	12.00	7.42	13.32	5.90	0.005008	0.163838
K	intron_retention	VDAC3	chr8	+	chr8:42259534-42260828				chr8:42259533-42259534;chr8:42260828-42260829		2.04	4.30	7.69	8.00	2.53	14.29	1.56	2.86	0.00	0.00	2.38	0.00	1.99	1.92	2.99	2.68	2.82	0.00	0.00	3.45	8.20	8.33	4.55	18.92	0.00	7.14	8.33	3.51	2.97	13.64	3.12	5.95	1.43	10.53	9.26	15.48	1.50	2.99	1.50	0.636904	1.000000
N	alternative_acceptor	GPR84	chr12	-	chr12:54757024-54758176;chr12:54757058-54758176;chr12:54757061-54758176;chr12:54757644-54758176;chr12:54757143-54758176	chr12:54756919-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	3.09	0.00	0.77	0.00	0.00	0.00	2.48	NA	1.35	5.48	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.194099	0.660713
K	intron_retention	SGF29	chr16	+	chr16:28601988-28602093				chr16:28601987-28601988;chr16:28602093-28602094		4.35	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	6.67	NA	0.00	0.00	0.00	7.50	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.778614	1.000000
N	alternative_acceptor	RP11-809N8.2	chr11	-	chr11:73106803-73106928	chr11:73106837-73106928		chr11:73106803-73106836	chr11:73106802-73106803		90.57	100.00	94.03	92.31	90.48	NA	100.00	92.86	100.00	100.00	100.00	NA	88.24	97.37	97.67	100.00	100.00	NA	NA	100.00	95.83	84.62	89.66	NA	100.00	100.00	92.68	90.91	100.00	NA	100.00	90.32	100.00	100.00	100.00	100.00	100.00	98.69	-1.31	0.777411	0.917646
N	alternative_acceptor	LMAN2	chr5	-	chr5:176764771-176765488;chr5:176764766-176765488	chr5:176764787-176765488		chr5:176764766-176764770;chr5:176764771-176764786	chr5:176764765-176764766;chr5:176764770-176764771		89.16	93.26	91.43	90.62	93.15	88.57	97.65	92.86	95.83	96.88	95.35	96.00	94.57	90.91	95.16	93.75	93.48	96.83	85.90	94.44	91.25	84.75	92.31	92.75	96.97	92.86	95.24	92.86	92.31	92.86	89.00	88.76	88.10	94.03	89.86	92.24	93.91	91.88	-2.03	0.592590	0.844088
K	alternative_acceptor	DGKZ	chr11	+	chr11:46388950-46389204	chr11:46388950-46389201		chr11:46389202-46389204	chr11:46389204-46389205		84.21	100.00	94.59	NA	NA	NA	97.37	92.31	93.75	100.00	100.00	NA	90.91	88.89	94.74	90.91	93.94	NA	NA	100.00	NA	NA	100.00	80.00	100.00	100.00	95.45	NA	92.86	NA	NA	100.00	NA	87.50	100.00	92.31	98.69	92.31	-6.38	0.327068	0.709013
K	jcn_only_AD	PSMD13	chr11	+	chr11:244706-247276	chr11:244762-247276		chr11:244706-244761	chr11:244705-244706		94.94	98.36	98.92	97.06	98.41	100.00	95.35	95.38	96.23	98.28	95.52	96.77	96.05	93.75	97.18	97.98	97.44	90.62	97.96	97.92	98.46	100.00	97.60	98.00	90.48	96.91	97.37	100.00	98.61	97.50	98.84	97.92	98.00	98.96	98.96	97.59	97.00	96.14	-0.86	0.863471	0.930693
K	jcn_only_AA	SDCBP	chr8	+	chr8:59484874-59488458;chr8:59484874-59490606	chr8:59484874-59488461					24.79	26.92	24.11	21.43	18.37	NA	23.92	25.34	24.33	22.96	20.75	23.82	24.29	24.80	24.21	24.41	22.64	23.08	NA	27.97	28.57	25.49	25.33	26.23	0.00	25.15	27.99	24.89	27.51	21.59	28.68	30.83	33.33	26.33	26.22	27.07	24.29	25.24	0.95	0.480902	0.740602
K	intron_retention		chr11	+	chr11:85989034-85989440				chr11:85989033-85989034;chr11:85989440-85989441		9.68	10.34	9.76	0.00	2.50	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.00	0.00	5.00	5.88	2.70	5.88	0.00	9.09	14.29	0.00	0.00	0.00	14.29	8.62	10.53	0.00	4.17	3.12	4.00	4.54	0.54	0.717566	1.000000
N	jcn_only_AA	AGRN	chr1	+	chr1:989932-990203;chr1:989932-990445	chr1:989932-990756		chr1:990204-990445;chr1:990446-990756	chr1:990445-990446;chr1:990756-990757		10.19	25.00	9.84	17.24	9.09	14.71	0.00	0.00	0.88	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	13.33	3.70	6.67	16.67	7.50	6.25	0.00	3.61	2.63	0.00	4.17	7.89	2.27	3.08	8.33	0.00	14.29	1.94	4.17	2.94	-1.23	0.345193	0.663989
K	intron_retention	NUP107	chr12	+	chr12:69135761-69136134				chr12:69135760-69135761;chr12:69136134-69136135		10.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	8.00	0.00	4.17	2.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.608000	1.000000
N	jcn_only_AD	FGD2	chr6	+	chr6:36993985-36995204;chr6:36993715-36995204;chr6:36995111-36995204	chr6:36994102-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		10.38	0.00	NA	NA	NA	NA	2.33	0.00	0.00	NA	0.00	0.00	0.00	5.42	0.00	7.69	0.00	0.00	0.00	3.90	NA	NA	0.00	0.00	NA	7.38	NA	7.69	0.00	6.90	7.41	0.00	0.00	0.00	9.09	6.45	0.00	6.40	6.40	0.013480	0.285457
K	intron_retention	UBXN1	chr11	-	chr11:62445107-62445252				chr11:62445106-62445107;chr11:62445252-62445253		6.15	5.65	10.47	5.64	3.88	4.76	0.65	0.00	0.00	0.00	0.70	0.00	1.38	2.38	2.31	1.12	1.40	0.00	2.48	6.75	4.15	7.58	5.08	8.80	1.53	6.19	6.41	3.77	3.20	3.88	7.11	9.06	4.12	7.33	9.38	7.80	2.00	6.17	4.17	0.325405	1.000000
N	cassette	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139889767-139892947	chr5:139889767-139892412;chr5:139892509-139892947		chr5:139892413-139892508			NA	100.00	100.00	84.62	100.00	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.50	NA	85.71	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	80.00	80.00	87.10	100.00	100.00	93.33	100.00	100.00	0.00	0.784302	0.935398
K	intron_retention	LRCH4,RP11-44M6.7	chr7	-	chr7:100175882-100176021				chr7:100175881-100175882;chr7:100176021-100176022		3.19	1.33	6.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	4.55	0.00	0.00	2.94	0.00	8.33	0.00	0.00	0.00	4.04	2.25	5.26	0.00	0.00	2.44	5.10	5.71	0.00	3.03	1.96	0.00	2.69	2.69	0.516218	1.000000
K	intron_retention		chr3	-	chr3:129284861-129285369				chr3:129284860-129284861;chr3:129285369-129285370		1.22	12.14	3.30	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	11.11	2.56	2.17	2.50	5.33	3.08	11.24	0.00	2.73	0.00	2.86	0.00	0.00	1.56	3.57	0.00	1.33	0.83	7.34	0.00	-7.34	0.167477	1.000000
N	alternative_acceptor		chr1	+	chr1:79121197-79123641;chr1:79121197-79124555	chr1:79121197-79124996		chr1:79123642-79124555;chr1:79124556-79124996	chr1:79124555-79124556;chr1:79124996-79124997		87.10	90.00	75.61	94.74	100.00	97.75	96.67	93.95	95.98	94.12	95.00	97.54	95.12	96.01	91.84	94.40	97.30	96.43	NA	88.44	100.00	83.33	95.83	88.70	NA	87.29	87.04	92.93	100.00	97.02	92.93	92.08	100.00	75.47	84.21	88.82	95.90	90.69	-5.21	0.133595	0.629354
K	intron_retention	TMEM94	chr17	+	chr17:73494620-73494709				chr17:73494619-73494620;chr17:73494709-73494710		10.53	16.22	11.36	NA	17.24	NA	2.44	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.11	12.12	10.00	6.45	NA	0.00	11.76	9.43	NA	8.11	10.00	12.00	14.29	13.64	16.67	10.34	18.75	1.22	10.82	9.60	0.942580	1.000000
K	alternative_first_exon	ARF1	chr1	+	chr1:228271011-228284778,chr1:228271214-228284778,chr1:228276423-228284778,chr1:228275979-228284778,chr1:228271006-228284778,chr1:228271054-228284778;chr1:228270467-228284778,chr1:228270552-228284778;chr1:228284206-228284778	chr1:228271076-228284778	chr1:228270361-228270466;chr1:228284152-228284205	chr1:228270851-228271075			3.23	13.33	3.74	0.00	0.00	NA	1.75	2.08	2.41	1.04	2.27	0.00	2.70	2.45	0.87	0.99	1.30	0.49	NA	3.94	5.26	2.42	4.62	1.09	7.69	3.45	2.87	1.08	1.03	0.98	3.30	3.38	0.00	1.50	1.67	1.55	2.70	3.26	0.56	0.453220	0.602038
K	jcn_only_AA	SF3B2	chr11	+	chr11:65822787-65823008	chr11:65822787-65823005		chr11:65823006-65823008	chr11:65823008-65823009		88.46	82.76	86.67	NA	80.00	NA	90.48	88.37	91.34	89.66	82.26	89.58	91.82	88.75	91.23	86.36	90.79	86.36	76.92	91.18	84.00	85.71	88.89	89.80	NA	87.80	88.51	91.18	85.71	85.29	89.80	88.29	92.31	90.57	87.14	89.42	90.48	88.60	-1.88	0.510448	0.760069
K	intron_retention	GTF2F1	chr19	-	chr19:6392915-6392994				chr19:6392914-6392915;chr19:6392994-6392995		0.00	0.00	2.27	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	5.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	MYL6	chr12	+	chr12:56554455-56555170				chr12:56554454-56554455;chr12:56555170-56555171		20.73	15.19	40.23	20.92	14.66	13.14	2.99	2.73	10.42	2.08	4.81	0.00	4.39	4.29	12.20	2.28	4.17	3.33	10.50	17.07	15.06	21.51	22.93	17.78	14.08	10.62	27.27	25.40	14.21	9.90	18.57	31.13	12.18	21.21	18.97	18.97	11.34	13.84	2.50	0.810048	1.000000
K	intron_retention	GRIPAP1	chrX	-	chrX:48831722-48832429				chrX:48831721-48831722;chrX:48832429-48832430		20.73	17.24	23.81	15.00	17.86	12.50	0.00	3.90	2.94	0.00	5.00	0.00	6.06	3.23	7.46	0.00	2.27	0.00	13.89	16.39	10.53	23.53	23.53	18.75	39.13	20.00	14.29	22.58	12.24	17.74	15.09	22.89	11.11	25.58	24.14	21.79	12.50	15.74	3.24	0.583527	1.000000
N	intron_retention		chr5	+	chr5:150647042-150649710				chr5:150647041-150647042;chr5:150649710-150649711		100.00	100.00	100.00	96.30	93.55	93.10	100.00	99.42	100.00	99.22	99.36	99.69	100.00	100.00	99.00	99.54	100.00	98.50	96.00	100.00	97.30	98.37	98.93	99.01	100.00	100.00	100.00	98.40	100.00	96.72	97.22	99.06	98.29	98.88	99.34	99.12	100.00	100.00	0.00	0.590225	1.000000
K	alternative_acceptor	HSPA4,TXNDC15	chr5	+	chr5:134229346-134231995	chr5:134229346-134231983		chr5:134231984-134231995	chr5:134231995-134231996		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.33	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	90.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
N	alternative_acceptor	ANPEP	chr15	-	chr15:90345144-90346469;chr15:90345766-90346469;chr15:90344839-90346469	chr15:90345825-90346469		chr15:90344839-90345143;chr15:90345144-90345765;chr15:90345766-90345824	chr15:90344838-90344839;chr15:90345143-90345144;chr15:90345765-90345766		0.36	0.00	1.03	1.77	0.78	5.00	0.00	0.14	0.00	0.60	0.57	0.87	0.23	0.27	0.82	1.37	1.17	1.43	0.00	0.26	1.05	1.81	0.83	2.39	0.00	0.36	1.16	1.76	1.14	2.01	0.33	0.24	0.00	2.36	1.55	2.79	0.00	0.30	0.30	0.000714	0.242646
K	intron_retention	LRP1	chr12	+	chr12:57578774-57578863				chr12:57578773-57578774;chr12:57578863-57578864		0.00	8.62	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	alternative_donor	TCEAL3	chrX	+	chrX:102862987-102863531	chrX:102862999-102863531		chrX:102862987-102862998	chrX:102862986-102862987		11.43	16.67	9.38	16.67	13.33	NA	15.38	12.50	8.70	18.75	13.89	NA	15.15	16.67	16.67	13.33	9.68	18.18	13.33	13.04	15.38	15.38	13.21	10.00	0.00	11.43	7.89	14.29	19.05	10.00	8.33	12.50	13.33	10.00	8.11	9.52	14.24	11.96	-2.28	0.978559	0.994374
N	alternative_donor	EIF3K	chr19	+	chr19:39109968-39110976;chr19:39109939-39110976;chr19:39109958-39110976;chr19:39109943-39110976	chr19:39109864-39110976		chr19:39109864-39109938;chr19:39109939-39109942;chr19:39109943-39109957;chr19:39109958-39109967	chr19:39109863-39109864;chr19:39109938-39109939;chr19:39109942-39109943;chr19:39109957-39109958		0.00	0.00	0.00	0.00	1.14	0.00	0.00	6.25	0.00	1.37	2.22	3.45	0.00	0.00	0.00	1.96	1.90	3.39	0.00	0.00	0.00	2.13	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	0.373901	0.650093
N	jcn_only_AD	CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660868;chr14:95660257-95660551	chr14:95660257-95660872		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		86.67	100.00	92.11	91.67	96.00	100.00	NA	100.00	100.00	NA	100.00	NA	NA	90.91	NA	NA	NA	NA	95.65	93.33	98.28	NA	88.24	NA	100.00	83.33	91.53	NA	83.33	100.00	81.82	93.33	90.91	100.00	100.00	100.00	97.83	88.79	-9.04	0.072243	0.605417
K	jcn_only_AA	PLIN3	chr19	-	chr19:4852278-4859601	chr19:4852314-4859601		chr19:4852278-4852313	chr19:4852277-4852278		100.00	100.00	93.75	NA	100.00	NA	100.00	95.76	100.00	100.00	93.89	94.55	95.38	97.27	100.00	98.05	91.57	100.00	NA	96.74	100.00	100.00	100.00	100.00	100.00	91.28	95.89	100.00	96.10	93.02	100.00	92.16	NA	97.47	95.29	100.00	100.00	97.00	-3.00	0.286821	0.663989
K	cassette	PAPOLA	chr14	+	chr14:96991729-96994289	chr14:96991729-96993766;chr14:96993877-96994289		chr14:96993767-96993876			95.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.96	95.52	98.57	98.25	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	96.08	97.50	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	ZFAND2B	chr2	+	chr2:220072144-220072369	chr2:220072286-220072369		chr2:220072144-220072285	chr2:220072143-220072144		12.50	0.00	4.35	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.69	0.00	0.00	NA	0.00	NA	6.67	5.00	0.00	7.69	0.00	NA	0.00	3.33	3.33	0.342449	0.650093
N	alternative_acceptor	TMEM259	chr19	-	chr19:1011649-1011739;chr19:1011663-1011739	chr19:1011612-1011739		chr19:1011612-1011648;chr19:1011649-1011662	chr19:1011611-1011612;chr19:1011648-1011649		58.00	29.73	50.79	50.00	50.00	NA	40.48	50.00	51.06	57.45	56.14	57.58	49.09	48.57	51.79	40.00	53.97	53.57	46.15	56.41	52.00	45.45	44.90	45.83	41.67	53.12	50.77	45.71	57.45	54.55	68.97	52.46	55.56	45.45	48.89	49.06	43.91	54.77	10.86	0.028120	0.546324
N	alternative_acceptor		chr5	.	chr5:176943449-176943725;chr5:176943514-176943725;chr5:176943485-176943725	chr5:176943518-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		7.32	4.17	12.96	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.37	27.27	16.22	0.00	0.00	0.00	0.00	4.17	0.00	0.00	4.65	7.14	11.76	0.00	12.50	7.14	0.00	0.00	4.17	4.65	15.38	5.56	4.55	5.71	2.77	4.17	1.40	0.739368	0.902878
K	cassette	STOML2	chr9	-	chr9:35101277-35101706	chr9:35101277-35101422;chr9:35101558-35101706		chr9:35101423-35101557			100.00	100.00	91.18	94.12	96.77	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	97.50	97.37	100.00	94.12	96.77	100.00	97.62	-2.38	0.250334	0.709176
K	intron_retention	GANAB	chr11	-	chr11:62400987-62402292				chr11:62400986-62400987;chr11:62402292-62402293		3.85	0.00	5.94	NA	NA	NA	0.00	0.00	0.00	0.00	1.05	0.00	0.40	1.67	1.20	0.69	0.47	0.00	NA	0.00	NA	3.12	3.51	4.55	22.22	3.45	7.02	0.00	3.23	0.00	0.00	2.78	NA	2.00	2.53	1.89	0.20	0.83	0.64	0.903712	1.000000
K	intron_retention		chr19	+	chr19:59060278-59060354				chr19:59060277-59060278;chr19:59060354-59060355		5.26	1.38	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.00	4.08	5.88	6.49	3.51	2.02	3.23	0.00	0.00	0.83	0.00	0.00	3.08	22.00	12.61	10.61	3.28	1.09	0.00	0.69	2.63	1.94	0.734248	1.000000
K	jcn_only_AA	RFXANK,SPHK2	chr19	+	chr19:19304943-19307774	chr19:19304943-19307771		chr19:19307772-19307774	chr19:19307774-19307775		31.25	29.41	31.82	53.57	39.74	44.44	35.19	47.27	42.86	43.33	55.74	50.00	39.34	41.10	43.66	44.12	45.68	46.15	26.58	36.67	40.40	35.71	40.38	33.33	33.85	47.27	40.96	46.67	47.22	37.93	33.96	38.16	37.36	33.33	55.32	51.35	34.52	38.89	4.37	0.113019	0.663989
K	intron_retention	MAGED2	chrX	+	chrX:54842124-54842313				chrX:54842123-54842124;chrX:54842313-54842314		30.10	28.38	32.10	23.53	22.54	17.50	18.42	18.97	18.06	12.20	12.50	7.84	20.00	16.33	17.05	5.26	17.65	8.82	22.89	26.76	24.30	33.33	25.49	34.78	17.82	21.60	25.26	23.53	24.07	14.58	19.40	25.00	23.81	27.59	27.50	28.57	21.45	20.50	-0.95	0.818641	1.000000
K	intron_retention	MITD1	chr2	-	chr2:99787116-99787805				chr2:99787115-99787116;chr2:99787805-99787806		4.08	7.69	2.04	0.00	4.76	0.00	4.76	0.00	2.70	0.00	0.00	NA	0.00	0.00	2.70	0.00	4.35	NA	4.26	2.86	0.00	0.00	1.64	23.53	15.00	9.68	4.05	4.55	4.44	8.70	4.76	3.23	4.35	2.63	1.72	5.00	4.55	3.47	-1.08	0.360641	1.000000
N	jcn_only_AA		chr3	+	chr3:52512299-52512388;chr3:52512299-52512390	chr3:52512299-52512464		chr3:52512389-52512390;chr3:52512391-52512464	chr3:52512390-52512391;chr3:52512464-52512465		100.00	100.00	95.24	NA	NA	NA	93.62	100.00	100.00	NA	100.00	NA	94.25	88.24	100.00	100.00	100.00	NA	NA	100.00	NA	NA	85.29	NA	58.82	86.67	93.33	NA	86.36	NA	NA	90.00	NA	87.50	86.36	100.00	93.94	100.00	6.06	0.452200	0.715134
N	alternative_donor	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2799382-2802525;chr18:2800735-2802525	chr18:2800739-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		1.61	0.00	6.67	NA	0.00	NA	0.00	1.56	2.50	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	NA	1.35	NA	0.00	0.00	0.00	NA	1.20	0.00	0.00	0.00	0.00	0.00	1.61	0.00	4.76	NA	2.70	0.00	1.46	1.46	0.005327	0.163838
N	jcn_only_AA		chrX	+	chrX:47106621-47106733	chrX:47106621-47106702		chrX:47106703-47106733	chrX:47106733-47106734		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.197701	0.663989
N	cassette	NUDT3,RPS10-NUDT3	chr6	-	chr6:34256709-34309638	chr6:34256709-34263417;chr6:34263463-34309638		chr6:34263418-34263462			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention	ILK	chr11	+	chr11:6629442-6629623				chr11:6629441-6629442;chr11:6629623-6629624		5.43	0.00	7.50	0.00	4.65	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.64	0.00	0.95	1.20	0.00	0.00	0.00	1.27	4.08	3.03	2.31	5.00	5.26	3.77	7.48	7.69	4.90	0.00	3.17	6.19	0.00	5.56	4.76	7.87	0.00	2.22	2.22	0.802777	1.000000
N	alternative_acceptor	NAGK	chr2	+	chr2:71299882-71300592;chr2:71299882-71299955	chr2:71299882-71300611		chr2:71299956-71300592;chr2:71300593-71300611	chr2:71300592-71300593;chr2:71300611-71300612		91.95	94.38	91.30	100.00	97.25	96.36	98.43	97.75	97.67	100.00	99.08	99.22	97.08	97.56	96.27	97.52	97.67	97.93	95.17	93.56	97.18	96.39	95.92	94.12	94.02	93.43	91.23	92.97	96.25	98.71	94.48	90.00	95.53	92.79	94.51	94.82	95.35	94.02	-1.33	0.429716	0.740984
K	intron_retention	PABPN1	chr14	+	chr14:23791030-23791389				chr14:23791029-23791030;chr14:23791389-23791390		10.34	9.68	8.57	0.00	1.56	0.00	0.77	0.00	0.83	0.66	0.56	0.00	0.00	1.06	1.45	0.81	1.29	0.00	0.00	5.88	0.00	1.79	3.54	4.76	12.73	6.12	6.49	0.00	1.72	3.57	3.03	7.69	0.00	4.55	3.45	3.17	0.39	4.46	4.07	0.872816	1.000000
K	intron_retention	TYK2	chr19	-	chr19:10468595-10468678				chr19:10468594-10468595;chr19:10468678-10468679		3.70	0.00	2.78	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	2.38	6.25	0.00	0.00	4.35	NA	0.00	NA	13.64	1.64	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.984457	1.000000
K	alternative_donor	MLKL	chr16	-	chr16:74708999-74709252	chr16:74708999-74709221		chr16:74709222-74709252	chr16:74709252-74709253		5.56	0.00	6.78	NA	NA	NA	0.00	3.64	3.70	0.00	0.00	0.00	0.00	1.41	4.35	NA	NA	0.00	NA	4.84	7.14	NA	7.69	0.00	NA	9.09	7.50	0.00	0.00	4.17	8.00	4.76	0.00	5.00	0.00	7.50	0.00	5.20	5.20	0.005277	0.163838
N	alternative_first_exon	MEPCE	chr7	+	chr7:100027137-100030541;chr7:100026664-100030541	chr7:100029313-100030541	chr7:100026440-100026663	chr7:100027254-100029312			90.48	90.00	89.36	NA	100.00	NA	92.86	89.47	92.00	90.91	86.96	NA	91.67	94.44	93.10	90.00	90.48	NA	NA	89.47	NA	80.95	89.66	90.91	88.89	91.30	93.75	92.86	93.75	NA	90.00	91.67	NA	91.67	92.00	89.47	90.84	90.24	-0.59	0.996706	0.996706
N	alternative_acceptor	DYNLL1	chr12	+	chr12:120934357-120935875;chr12:120934357-120935852;chr12:120934357-120935637	chr12:120934357-120935922		chr12:120935638-120935852;chr12:120935853-120935875;chr12:120935876-120935922	chr12:120935852-120935853;chr12:120935875-120935876;chr12:120935922-120935923		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.49	6.93	8.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.61	6.59	6.17	0.00	0.00	0.00	0.00	0.00	0.00	0.871431	0.956197
K	intron_retention		chr12	-	chr12:113836412-113836511				chr12:113836411-113836412;chr12:113836511-113836512		1.81	0.00	2.27	0.00	2.68	NA	0.00	0.00	0.13	0.36	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.46	1.31	5.00	2.89	0.00	0.00	1.41	2.80	2.86	0.00	0.00	2.97	2.36	10.20	1.42	0.98	2.29	0.00	1.61	1.61	0.962424	1.000000
K	intron_retention	C20orf24	chr20	+	chr20:35236404-35238003				chr20:35236403-35236404;chr20:35238003-35238004		5.80	0.00	6.45	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	2.08	0.00	4.55	NA	NA	0.00	5.36	0.00	0.00	0.00	4.76	9.09	3.23	2.56	3.57	0.00	0.00	2.90	2.60	0.00	6.25	5.26	8.06	0.00	3.06	3.06	0.928592	1.000000
N	jcn_only_AD	SIPA1	chr11	+	chr11:65415083-65416732;chr11:65416647-65416732	chr11:65415130-65416732		chr11:65415083-65415129;chr11:65415130-65416646	chr11:65415082-65415083;chr11:65415129-65415130		97.62	97.17	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.44	100.00	94.00	97.44	93.41	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.83	96.05	100.00	NA	100.00	100.00	100.00	98.91	-1.09	0.809421	0.910055
K	cassette	ZNF385A	chr12	-	chr12:54764881-54767756	chr12:54764881-54765256;chr12:54765500-54767756		chr12:54765257-54765499			87.90	89.29	80.58	NA	69.77	NA	97.96	94.48	98.65	93.90	93.22	92.41	96.67	96.40	94.12	91.30	94.25	100.00	76.92	88.06	88.89	71.43	75.23	78.72	100.00	91.59	86.84	87.50	89.02	94.59	85.00	77.38	86.67	83.33	85.53	84.27	92.98	89.83	-3.16	0.869046	0.954868
K	cassette	EIF4A1	chr17	+	chr17:7481235-7481659	chr17:7481235-7481544;chr17:7481563-7481659		chr17:7481545-7481562			94.13	94.12	93.55	96.65	95.67	96.77	99.77	99.64	100.00	99.78	99.50	100.00	100.00	99.36	99.20	99.30	99.53	99.50	94.22	91.52	95.61	96.59	95.22	97.15	96.85	97.44	96.79	98.58	98.47	98.84	83.29	84.38	87.80	95.65	94.74	97.00	95.53	95.78	0.25	0.704351	0.892675
K	alternative_first_exon	LINC01578,RP11-437B10.1	chr15	+	chr15:93428385-93428744,chr15:93428348-93428744;chr15:93427009-93428744;chr15:93426774-93428744	chr15:93426417-93428744	chr15:93426815-93427008;chr15:93426643-93426773	chr15:93425937-93426416			45.45	48.15	49.38	41.67	29.63	NA	55.00	56.52	68.18	48.28	56.00	54.17	55.56	57.89	71.43	48.28	60.00	50.00	50.00	38.24	55.88	25.93	39.02	27.27	66.67	48.57	58.82	60.00	50.00	47.06	31.43	39.71	55.56	33.33	37.14	28.00	55.28	47.01	-8.27	0.112177	0.284861
K	jcn_only_AA	EIF4A1	chr17	+	chr17:7481235-7481544;chr17:7481235-7481418;chr17:7481235-7481437	chr17:7481235-7481482		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		96.02	95.81	94.39	97.36	96.46	96.09	99.88	100.00	98.84	98.98	99.09	99.45	98.78	99.38	99.39	98.32	99.29	99.09	89.60	92.27	93.92	96.15	95.79	96.64	94.77	97.58	97.79	97.72	96.52	96.68	89.25	89.57	89.14	96.76	97.01	97.18	95.29	96.80	1.51	0.675610	0.855556
K	intron_retention	HNRNPC	chr14	-	chr14:21679723-21679968				chr14:21679722-21679723;chr14:21679968-21679969		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.70	4.76	0.00	0.00	3.03	NA	0.00	0.00	0.00	0.00	0.00	10.34	6.52	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.489161	1.000000
K	intron_retention	POR	chr7	+	chr7:75615560-75615654				chr7:75615559-75615560;chr7:75615654-75615655		2.73	2.81	3.19	2.63	4.44	0.00	0.00	0.00	0.00	1.30	1.00	0.00	1.41	0.00	0.00	0.97	0.00	0.00	3.91	2.74	2.10	2.63	1.55	0.00	2.52	2.63	4.39	2.61	2.67	5.41	6.56	5.36	4.38	3.39	1.12	1.27	2.67	2.68	0.01	0.955391	1.000000
N	alternative_first_exon	SNU13	chr22	-	chr22:42076369-42084797;chr22:42076369-42483063	chr22:42076369-42078359	chr22:42084798-42084913;chr22:42483064-42483339	chr22:42078360-42078626			28.57	28.00	25.71	36.36	18.18	NA	22.00	27.27	27.27	34.78	21.31	33.33	15.15	NA	37.50	37.88	21.95	25.93	22.73	31.25	36.11	42.86	22.00	38.89	NA	NA	27.27	33.33	25.53	33.33	35.29	39.39	25.00	43.33	28.95	40.00	22.73	29.91	7.18	0.023210	0.110664
N	intron_retention		chr14	-	chr14:50584379-50584483				chr14:50584378-50584379;chr14:50584483-50584484		100.00	100.00	87.50	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	90.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.44	96.00	100.00	100.00	100.00	88.89	100.00	100.00	0.00	0.594508	1.000000
K	cassette	LSM14A	chr19	+	chr19:34712644-34718269	chr19:34712644-34717312;chr19:34717370-34718269		chr19:34717313-34717369			26.42	26.09	32.89	54.55	45.00	50.00	40.74	23.40	23.81	56.67	38.71	36.84	34.33	18.60	25.40	37.70	40.91	35.71	31.58	28.85	28.57	30.30	30.77	43.48	NA	37.50	38.71	36.00	41.18	31.25	21.21	37.25	42.86	45.95	39.13	28.79	34.33	24.91	-9.42	0.054505	0.588061
K	alternative_acceptor	PPP1R12C	chr19	-	chr19:55606969-55607234	chr19:55606972-55607234		chr19:55606969-55606971	chr19:55606968-55606969		35.56	36.84	41.46	40.00	34.48	NA	41.67	40.74	43.75	NA	46.15	NA	46.43	40.00	39.13	41.18	50.00	NA	41.18	40.00	36.36	41.67	42.86	50.00	50.00	35.42	40.74	35.29	40.74	50.00	32.14	43.24	50.00	26.32	48.48	48.15	44.05	37.78	-6.27	0.024717	0.546324
K	jcn_only_AD	UQCRQ	chr5	+	chr5:132202380-132202560	chr5:132202384-132202560		chr5:132202380-132202383	chr5:132202379-132202380		6.12	4.08	7.50	6.59	6.45	8.87	7.30	0.00	0.00	4.96	8.51	4.80	11.50	9.52	14.29	9.63	7.32	8.70	8.63	5.88	9.04	4.55	9.20	7.46	6.85	8.33	7.14	11.27	13.48	10.66	11.29	10.14	8.72	7.14	7.87	6.19	7.96	7.22	-0.74	0.614731	0.809875
K	intron_retention	PHRF1	chr11	+	chr11:610348-610500				chr11:610347-610348;chr11:610500-610501		0.00	8.70	5.13	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	7.69	2.04	5.00	NA	0.00	4.17	0.00	0.00	0.00	6.90	4.00	9.09	0.00	3.33	0.00	0.00	0.00	0.00	0.793677	1.000000
N	cassette	ARHGAP18	chr6	-	chr6:129901277-129920360	chr6:129901277-129905132;chr6:129905258-129920360		chr6:129905133-129905257			91.30	100.00	93.10	NA	93.94	NA	94.17	90.79	100.00	100.00	94.35	92.86	93.96	93.33	100.00	100.00	92.86	92.59	100.00	86.89	90.91	100.00	96.49	NA	100.00	92.59	87.32	85.71	93.10	NA	NA	88.46	100.00	92.31	91.80	100.00	100.00	91.30	-8.70	0.002318	0.159586
N	jcn_only_AA	GCA	chr2	+	chr2:163216063-163218409;chr2:163216063-163216726;chr2:163216063-163236413;chr2:163216063-163216702;chr2:163216063-163216735	chr2:163216063-163227815		chr2:163216703-163216726;chr2:163216727-163216735;chr2:163216736-163218409;chr2:163218410-163227815;chr2:163227816-163236413	chr2:163216726-163216727;chr2:163216735-163216736;chr2:163218409-163218410;chr2:163227815-163227816;chr2:163236413-163236414		3.33	10.17	2.84	15.38	8.70	11.76	1.56	2.75	0.00	1.37	0.00	1.67	0.00	2.42	1.30	0.00	2.38	0.00	10.53	8.74	6.98	0.00	4.76	3.61	14.29	4.55	4.00	0.00	0.00	4.85	10.64	5.83	8.00	2.50	0.00	4.95	9.09	3.94	-5.15	0.469917	0.730109
K	jcn_only_AD	RANBP3	chr19	-	chr19:5928099-5931429	chr19:5928099-5931414		chr19:5931415-5931429	chr19:5931429-5931430		46.43	40.00	47.73	NA	NA	NA	47.37	33.33	57.50	42.86	50.00	48.48	45.24	60.87	48.78	46.34	48.00	54.55	NA	60.00	53.85	50.00	51.85	60.00	43.75	33.33	55.56	53.33	36.84	60.00	42.86	52.00	NA	56.00	40.62	52.63	44.50	44.64	0.15	0.709218	0.847991
K	intron_retention		chr9	-	chr9:139836137-139836497				chr9:139836136-139836137;chr9:139836497-139836498		28.12	25.00	23.40	37.14	35.71	28.57	6.19	6.90	4.55	9.68	6.03	5.45	6.25	14.47	12.04	8.64	4.76	6.38	34.62	23.73	20.20	33.33	38.71	37.84	10.00	18.06	29.76	13.95	12.96	17.39	26.67	30.58	26.83	34.00	27.45	28.40	17.50	20.89	3.39	0.986392	1.000000
K	alternative_acceptor	PGPEP1,SCAMP4	chr19	+	chr19:1918990-1923068	chr19:1918990-1920646		chr19:1920647-1923068	chr19:1923068-1923069		13.04	7.14	10.00	NA	NA	NA	2.56	5.00	3.03	0.00	2.78	0.00	1.52	4.00	4.17	3.85	2.63	0.00	NA	11.76	NA	NA	9.30	9.09	18.18	10.34	11.11	8.33	8.00	NA	10.00	5.88	10.00	15.38	11.11	17.39	7.14	10.17	3.03	0.744913	0.903536
N	alternative_donor	TM9SF4	chr20	+	chr20:30746318-30747794	chr20:30747140-30747794		chr20:30746318-30747139	chr20:30746317-30746318		3.39	NA	2.55	0.00	0.00	0.00	0.00	1.25	0.80	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	4.17	NA	4.44	2.00	7.14	0.00	3.70	2.27	2.11	0.00	4.55	3.33	4.35	0.00	1.94	1.94	0.020471	0.274720
K	cassette	PSMD6	chr3	-	chr3:63996632-64004274	chr3:63996632-63999114;chr3:63999284-64004274		chr3:63999115-63999283			94.83	100.00	100.00	97.14	99.03	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	98.28	97.67	97.67	100.00	91.67	95.10	100.00	96.43	98.08	100.00	97.26	100.00	100.00	100.00	100.00	88.71	91.78	97.30	98.95	98.80	97.50	100.00	96.05	-3.95	0.078257	0.641134
K	intron_retention		chr17	+	chr17:40715341-40715978				chr17:40715340-40715341;chr17:40715978-40715979		10.00	3.92	13.56	NA	8.33	NA	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	11.76	3.85	12.50	4.44	15.38	NA	2.56	9.26	0.00	2.56	4.00	6.67	14.29	7.14	10.00	12.12	8.22	0.00	4.62	4.62	0.735574	1.000000
K	intron_retention	MIF4GD	chr17	-	chr17:73263983-73264163				chr17:73263982-73263983;chr17:73264163-73264164		6.25	14.71	0.00	NA	10.71	NA	2.50	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	6.67	7.14	NA	NA	8.57	NA	NA	16.67	6.67	0.00	6.00	NA	NA	8.00	4.35	0.00	4.00	0.00	4.35	6.25	1.90	0.999250	1.000000
K	intron_retention	MCRS1	chr12	-	chr12:49952513-49952625				chr12:49952512-49952513;chr12:49952625-49952626		7.69	4.23	9.38	2.78	10.91	7.69	3.23	0.00	4.17	13.33	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.13	6.67	5.00	11.11	0.00	9.09	2.94	5.26	11.36	5.41	4.76	6.45	5.45	6.25	12.50	6.67	2.66	2.38	-0.28	0.680206	1.000000
K	jcn_only_AD	ASCC2	chr22	-	chr22:30197100-30198050	chr22:30197100-30197982		chr22:30197983-30198050	chr22:30198050-30198051		96.77	100.00	100.00	NA	97.37	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	90.00	100.00	98.44	100.00	100.00	92.59	95.12	95.83	100.00	100.00	93.33	93.48	100.00	100.00	100.00	93.33	100.00	95.05	-4.95	0.037050	0.460147
K	intron_retention	OAS1	chr12	+	chr12:113355506-113357193				chr12:113355505-113355506;chr12:113357193-113357194		28.40	19.57	18.42	31.03	23.53	40.94	100.00	100.00	100.00	100.00	100.00	100.00	24.00	26.86	22.55	28.57	45.00	25.53	25.00	26.86	100.00	17.24	29.41	25.57	25.81	25.97	22.03	30.81	20.00	31.33	99.55	100.00	100.00	100.00	NA	100.00	25.41	27.63	2.22	0.848304	1.000000
K	cassette	IRF3	chr19	-	chr19:50163091-50165681;chr19:50163091-50165204	chr19:50163091-50163969;chr19:50164086-50165204,chr19:50164086-50165681		chr19:50163970-50164085			100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	99.15	100.00	97.62	NA	94.12	NA	100.00	100.00	97.87	NA	100.00	100.00	95.83	100.00	98.08	NA	100.00	100.00	100.00	100.00	0.00	0.769555	0.929541
N	jcn_only_AA	SCAF11	chr12	-	chr12:46315978-46316245;chr12:46316015-46316245	chr12:46313093-46316245		chr12:46313093-46315977;chr12:46315978-46316014	chr12:46313092-46313093;chr12:46315977-46315978		2.04	48.48	5.36	20.83	17.95	33.33	0.00	4.08	4.88	7.69	3.33	2.38	3.64	6.25	5.41	0.00	2.11	4.17	27.27	11.54	37.50	0.00	15.91	8.82	53.57	6.78	7.32	16.00	13.95	20.00	8.70	10.91	23.53	5.77	6.38	11.86	25.40	6.52	-18.88	0.083366	0.663989
N	jcn_only_AD	PSMF1	chr20	+	chr20:1145121-1145672	chr20:1145137-1145672		chr20:1145121-1145136	chr20:1145120-1145121		3.74	0.00	0.00	0.00	2.63	1.49	0.78	1.20	2.16	5.43	2.44	1.09	1.71	3.15	1.61	4.21	1.56	0.00	1.52	2.41	1.22	0.00	0.00	3.77	0.00	0.00	0.00	5.71	3.96	1.65	1.61	0.00	0.00	2.56	2.41	0.84	0.39	2.01	1.62	0.069404	0.598101
N	cassette	BRE	chr2	+	chr2:28521359-28561316;chr2:28533021-28561316;chr2:28533021-28561344	chr2:28533021-28550140,chr2:28521359-28550140;chr2:28550315-28561344,chr2:28550315-28561316		chr2:28550141-28550314			12.00	6.25	11.36	15.38	14.89	23.33	10.00	25.00	11.11	13.16	11.43	18.18	13.33	NA	11.76	20.00	6.90	12.50	10.53	18.52	10.94	20.00	10.87	24.39	8.33	12.50	11.11	10.00	11.63	21.05	11.76	18.18	7.32	12.90	10.00	24.07	9.16	12.50	3.34	0.059489	0.606785
N	alternative_acceptor	KAT7	chr17	+	chr17:76167731-76167931;chr17:76167731-76167846;chr17:76167731-76167879	chr17:76167731-76167819		chr17:76167820-76167846;chr17:76167847-76167879;chr17:76167880-76167931	chr17:76167846-76167847;chr17:76167879-76167880;chr17:76167931-76167932		98.36	100.00	97.80	97.14	97.62	100.00	100.00	99.76	99.84	100.00	99.73	100.00	99.63	100.00	100.00	100.00	100.00	100.00	92.86	95.52	97.99	98.68	97.37	96.43	100.00	98.82	98.16	100.00	98.93	100.00	93.75	97.12	91.11	97.20	98.08	98.21	99.81	98.59	-1.22	0.830940	0.940678
K	intron_retention		chr2	-	chr2:74754491-74754597				chr2:74754490-74754491;chr2:74754597-74754598		4.69	6.02	8.86	5.33	5.26	4.66	0.53	1.27	1.18	0.51	1.62	0.64	0.51	2.02	3.09	2.21	1.16	0.62	4.85	5.48	3.96	6.30	7.94	8.13	5.83	6.59	5.88	1.90	3.91	3.54	9.77	8.88	6.12	5.03	6.25	7.43	5.34	5.09	-0.25	0.884624	1.000000
N	cassette	PPM1G	chr2	-	chr2:27605473-27606818;chr2:27605096-27606818	chr2:27605473-27606232,chr2:27605096-27606232;chr2:27606468-27606818		chr2:27606233-27606467			100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	94.29	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.983860	0.995793
K	alternative_donor	RAC2	chr22	-	chr22:37637699-37640329;chr22:37637699-37640153	chr22:37637699-37640174		chr22:37640154-37640174;chr22:37640175-37640329	chr22:37640174-37640175;chr22:37640329-37640330		0.00	3.57	1.05	NA	0.00	NA	1.36	0.00	3.57	1.79	1.37	1.61	1.87	2.33	6.25	0.00	1.08	0.00	NA	1.56	2.56	0.00	0.00	0.00	NA	2.08	1.45	1.96	2.33	NA	0.00	0.00	0.00	1.92	0.00	0.00	1.62	0.78	-0.84	0.451530	0.711941
K	alternative_last_exon	C19orf70	chr19	-	chr19:5678660-5679355	chr19:5679242-5679355	chr19:5678433-5678659	chr19:5678843-5679241			4.00	3.88	0.00	3.49	4.84	2.72	0.99	0.00	2.94	1.27	2.30	0.00	1.92	0.00	4.08	0.96	0.96	1.52	2.48	7.69	2.27	8.82	3.45	9.68	2.35	NA	7.14	6.25	3.33	4.26	11.76	6.25	1.66	2.04	3.33	3.39	2.13	4.00	1.87	0.340576	0.535374
N	alternative_donor	EIF3K	chr19	+	chr19:39109864-39110976;chr19:39109939-39110976;chr19:39109958-39110976;chr19:39109943-39110976	chr19:39109968-39110976		chr19:39109864-39109938;chr19:39109939-39109942;chr19:39109943-39109957;chr19:39109958-39109967	chr19:39109863-39109864;chr19:39109938-39109939;chr19:39109942-39109943;chr19:39109957-39109958		95.24	92.73	90.00	95.24	92.05	95.56	94.44	93.75	100.00	93.15	92.22	93.10	95.92	100.00	100.00	92.16	94.29	96.61	97.37	94.44	95.92	89.36	95.24	95.74	97.22	NA	90.48	93.18	96.25	96.49	100.00	95.24	93.24	96.36	94.92	91.78	95.18	95.24	0.06	0.370485	0.650093
N	jcn_only_AD	CHMP5	chr9	+	chr9:33265168-33266007;chr9:33265825-33266007;chr9:33265794-33266007	chr9:33265146-33266007		chr9:33265146-33265167;chr9:33265168-33265793;chr9:33265794-33265824	chr9:33265145-33265146;chr9:33265167-33265168;chr9:33265793-33265794		94.98	100.00	100.00	100.00	100.00	NA	100.00	71.81	88.94	98.89	100.00	90.15	100.00	74.49	83.95	98.51	100.00	90.84	NA	89.35	100.00	100.00	100.00	94.39	NA	84.04	100.00	100.00	100.00	89.89	91.38	98.63	100.00	100.00	100.00	92.74	100.00	86.69	-13.31	0.009545	0.237005
N	jcn_only_AD	EIF2B4	chr2	-	chr2:27589804-27589940;chr2:27589804-27589951	chr2:27589804-27590036		chr2:27589941-27589951;chr2:27589952-27590036	chr2:27589951-27589952;chr2:27590036-27590037		11.11	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	10.00	8.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	5.00	9.76	0.00	2.50	2.50	0.00	0.00	0.00	0.919627	0.958585
K	intron_retention	NACA	chr12	-	chr12:57106337-57106569				chr12:57106336-57106337;chr12:57106569-57106570		1.94	1.68	2.84	1.01	0.89	0.69	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.27	0.00	0.00	1.59	5.13	2.02	3.14	1.62	1.95	0.90	1.60	1.58	0.77	1.13	1.27	9.18	4.85	2.27	1.59	1.97	1.51	1.25	1.77	0.52	0.417567	1.000000
K	intron_retention	PRMT2	chr21	+	chr21:48055676-48056350				chr21:48055675-48055676;chr21:48056350-48056351		6.25	0.00	10.34	10.00	15.38	NA	0.00	3.28	4.26	1.75	0.00	0.00	3.61	4.62	0.00	0.00	0.00	1.49	NA	0.00	15.38	0.00	0.00	8.70	0.00	7.14	4.00	4.76	0.00	3.70	0.00	0.00	NA	0.00	0.00	5.56	0.00	3.95	3.95	0.501351	1.000000
N	alternative_acceptor		chr7	.	chr7:43663488-43664116	chr7:43663488-43664104		chr7:43664105-43664116	chr7:43664116-43664117		0.00	41.18	2.24	0.00	0.00	2.33	0.00	0.00	0.70	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.55	NA	0.00	4.42	0.00	0.00	0.00	NA	1.08	1.01	0.00	0.00	0.00	1.92	0.64	6.25	0.00	0.00	1.28	3.12	0.00	-3.12	0.333912	0.709013
K	intron_retention		chr2	+	chr2:138762796-138771344				chr2:138762795-138762796;chr2:138771344-138771345		3.80	0.00	3.01	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	1.27	0.00	0.00	1.67	0.00	NA	1.61	2.35	3.57	5.33	0.00	0.00	1.22	0.00	0.00	3.95	0.00	0.00	0.64	0.64	0.633801	1.000000
N	jcn_only_AA		chr6	+	chr6:139350013-139354885;chr6:139350013-139355295	chr6:139350013-139355291		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		87.73	89.34	90.18	100.00	90.32	85.71	95.71	98.55	97.48	98.20	97.24	100.00	96.75	97.58	98.06	98.21	96.07	97.37	96.00	96.15	95.90	100.00	100.00	100.00	100.00	97.25	97.24	94.59	96.95	97.62	94.44	100.00	97.56	97.12	97.30	98.61	96.38	96.70	0.33	0.784740	0.907789
N	alternative_acceptor	MMP14	chr14	+	chr14:23306135-23308336;chr14:23306135-23306389	chr14:23306135-23310699		chr14:23306390-23308336;chr14:23308337-23310699	chr14:23308336-23308337;chr14:23310699-23310700		99.75	98.84	99.41	87.50	100.00	80.00	100.00	99.84	99.89	99.83	99.82	99.72	100.00	99.83	99.74	99.60	99.89	99.81	100.00	99.76	98.43	99.31	99.48	99.40	100.00	99.61	99.78	99.16	100.00	98.17	99.62	99.87	100.00	98.94	99.53	99.35	100.00	99.75	-0.25	0.730471	0.900154
N	alternative_donor		chr16	-	chr16:67190572-67193576;chr16:67190572-67193727	chr16:67190572-67193740		chr16:67193577-67193727;chr16:67193728-67193740	chr16:67193727-67193728;chr16:67193740-67193741		96.00	94.12	100.00	NA	NA	100.00	91.67	95.77	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	93.33	100.00	78.26	NA	95.00	100.00	96.15	100.00	96.05	100.00	100.00	NA	NA	NA	90.00	97.06	98.00	0.94	0.592270	0.801588
N	alternative_acceptor	ACAP2	chr3	-	chr3:194999698-195006524	chr3:195000158-195006524		chr3:194999698-195000157	chr3:194999697-194999698		95.24	100.00	97.56	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AD	CSNK1D	chr17	-	chr17:80203916-80206750	chr17:80203916-80204073		chr17:80204074-80206750	chr17:80206750-80206751		12.20	13.95	6.98	8.82	8.89	7.32	0.00	3.33	3.03	1.67	3.70	2.63	1.03	0.00	2.56	3.88	0.00	4.88	0.00	12.82	6.67	12.50	2.04	2.00	0.00	10.87	2.56	14.58	12.50	9.43	8.89	7.69	10.53	9.26	8.82	11.11	0.52	9.88	9.36	0.286058	0.657607
K	coord_cassette	STAT6	chr12	-	chr12:57501098-57504911	chr12:57501098-57501441;chr12:57501527-57501945;chr12:57502083-57504911		chr12:57501442-57501526;chr12:57501946-57502082			96.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	90.00	100.00	90.48	100.00	100.00	98.72	96.55	94.59	100.00	NA	100.00	NA	NA	100.00	90.48	100.00	89.47	100.00	NA	100.00	NA	NA	100.00	NA	94.12	100.00	96.55	100.00	100.00	0.00	0.230674	0.643829
N	alternative_acceptor	GMPPA	chr2	+	chr2:113343692-113343792	chr2:113343692-113343776		chr2:113343777-113343792	chr2:113343792-113343793		72.73	73.81	73.68	80.00	84.09	77.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	76.47	54.55	88.24	NA	100.00	NA	86.21	90.00	76.47	100.00	96.30	100.00	70.00	73.33	76.09	90.91	80.95	83.33	81.34	81.37	0.03	0.650320	0.872036
K	intron_retention		chr17	+	chr17:27895849-27896035				chr17:27895848-27895849;chr17:27896035-27896036		0.00	NA	0.00	NA	22.22	NA	0.00	0.00	0.00	NA	0.00	0.00	3.23	0.00	0.00	0.00	0.00	NA	21.43	0.00	0.00	NA	13.64	NA	21.74	0.00	2.78	NA	25.93	0.00	0.00	0.00	NA	NA	14.29	NA	12.33	0.00	-12.33	0.271122	1.000000
N	coord_cassette	EIF3H	chr8	-	chr8:117668245-117767904	chr8:117668245-117669453;chr8:117669554-117671051;chr8:117671220-117767904		chr8:117669454-117669553;chr8:117671052-117671219			83.33	100.00	94.12	100.00	97.06	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.29	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AA	ABTB1,KIF9-AS1	chr3	+	chr3:127391925-127393233;chr3:127391925-127393210	chr3:127391925-127393187		chr3:127393188-127393210;chr3:127393211-127393233	chr3:127393210-127393211;chr3:127393233-127393234		10.00	11.43	33.33	NA	15.79	NA	8.00	16.98	18.18	22.22	22.22	18.75	13.04	13.95	11.54	16.67	9.68	NA	10.00	14.29	NA	40.00	26.47	30.00	0.00	18.75	13.89	25.00	18.18	25.00	12.00	15.62	10.00	30.00	17.65	20.00	10.00	14.12	4.12	0.037462	0.663989
N	jcn_only_AA	TRPM2	chr21	+	chr21:45844823-45845552	chr21:45844823-45845196		chr21:45845197-45845552	chr21:45845552-45845553		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.28	0.00	0.00	15.38	0.00	11.11	0.00	0.00	0.00	0.00	0.00	4.08	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	CCDC88A	chr2	-	chr2:55518301-55518811				chr2:55518300-55518301;chr2:55518811-55518812		0.00	0.00	3.23	NA	0.00	NA	6.00	0.00	4.76	3.23	2.63	0.00	4.08	7.32	6.82	4.35	3.70	5.00	0.00	3.33	0.00	7.69	0.00	0.00	0.00	0.00	5.71	6.67	0.00	NA	0.00	0.00	0.00	9.09	6.00	0.00	0.00	0.00	0.00	0.957010	1.000000
K	intron_retention	HNRNPA2B1	chr7	-	chr7:26231959-26232114				chr7:26231958-26231959;chr7:26232114-26232115		14.12	1.18	17.68	4.14	3.39	2.86	1.15	2.39	1.99	1.23	1.35	0.62	1.81	3.36	5.00	1.66	1.54	0.83	1.36	11.16	3.66	10.28	10.31	12.82	1.89	16.51	14.81	5.03	4.58	3.17	17.29	21.01	3.77	16.86	18.31	12.29	1.58	12.64	11.05	0.039355	1.000000
N	jcn_only_AD	ZFYVE19	chr15	+	chr15:41101657-41102846;chr15:41102415-41102846	chr15:41102670-41102846					4.17	1.85	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	6.06	0.00	0.00	NA	2.70	NA	0.00	0.00	5.71	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.717825	0.853669
K	intron_retention		chr8	-	chr8:145619516-145619593				chr8:145619515-145619516;chr8:145619593-145619594		0.00	8.64	6.67	0.00	6.38	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	5.26	NA	1.56	0.00	0.00	0.00	6.25	0.00	3.92	0.00	3.12	NA	9.09	0.00	6.67	10.34	4.05	6.25	3.12	0.00	2.74	0.00	-2.74	0.827631	1.000000
N	jcn_only_AD	AGTRAP	chr1	+	chr1:11809674-11810133;chr1:11808647-11810133	chr1:11808668-11810133		chr1:11808647-11808667;chr1:11808668-11809673	chr1:11808646-11808647;chr1:11808667-11808668		74.34	65.52	77.63	82.93	77.78	65.22	80.22	76.32	81.86	79.49	74.14	87.50	68.42	76.16	73.33	73.68	76.60	81.82	84.62	78.57	73.65	80.65	71.79	79.59	80.00	77.72	79.33	76.19	77.14	79.55	78.15	80.00	76.56	75.76	78.26	77.12	78.28	77.02	-1.26	0.762030	0.877652
N	cassette	SPPL2A	chr15	-	chr15:51023237-51028297;chr15:51018575-51028297	chr15:51018575-51024799,chr15:51023237-51024799;chr15:51024882-51028297		chr15:51024800-51024881			98.69	100.00	97.82	100.00	100.00	83.33	100.00	99.56	99.20	100.00	100.00	98.79	98.99	99.23	99.60	100.00	100.00	99.27	100.00	97.66	100.00	98.04	97.30	95.15	NA	97.87	97.55	100.00	100.00	96.81	96.95	98.21	100.00	97.10	100.00	96.99	100.00	98.28	-1.72	0.013984	0.369835
K	jcn_only_AD	DNMT1	chr19	-	chr19:10244984-10246411	chr19:10244984-10246114		chr19:10246115-10246411	chr19:10246411-10246412		1.59	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.13	0.00	NA	0.00	0.00	5.00	2.08	0.00	NA	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.247945	0.657607
N	cassette	PTP4A2	chr1	-	chr1:32374562-32381495;chr1:32374562-32377296	chr1:32374562-32375638;chr1:32375714-32381495,chr1:32375714-32377296		chr1:32375639-32375713			96.43	96.72	95.07	94.59	96.48	94.38	98.37	96.08	95.69	97.73	94.44	96.72	96.30	97.30	94.95	94.51	94.51	100.00	94.84	94.53	96.30	96.36	96.72	97.44	100.00	98.15	97.83	95.65	95.04	97.01	95.96	95.74	97.84	100.00	96.55	95.31	97.28	96.25	-1.03	0.320442	0.709176
K	intron_retention	KMT2B	chr19	+	chr19:36224588-36224663				chr19:36224587-36224588;chr19:36224663-36224664		11.11	8.33	8.11	NA	14.29	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	NA	8.00	14.29	5.88	13.04	0.00	21.43	8.33	7.50	0.00	11.11	10.00	17.24	15.00	NA	5.56	14.71	6.38	4.17	8.16	4.00	0.993910	1.000000
K	cassette	NARF	chr17	+	chr17:80417949-80426639	chr17:80417949-80422162;chr17:80422307-80426639		chr17:80422163-80422306			98.48	90.00	98.72	NA	100.00	NA	100.00	96.00	100.00	100.00	100.00	100.00	97.50	100.00	98.08	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	98.59	NA	100.00	100.00	96.67	98.46	100.00	100.00	94.74	100.00	98.75	99.24	0.49	0.545908	0.816194
K	alternative_donor	GLMP	chr1	-	chr1:156264808-156265316	chr1:156264808-156265087		chr1:156265088-156265316	chr1:156265316-156265317		6.06	0.00	7.69	NA	0.00	NA	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	NA	0.00	2.63	2.17	0.00	0.00	0.00	0.183677	0.563271
K	jcn_only_AA	DCTN1	chr2	-	chr2:74588665-74596426	chr2:74596342-74596426		chr2:74588665-74596341	chr2:74588664-74588665		90.91	100.00	96.30	NA	41.18	20.00	98.65	100.00	100.00	100.00	97.06	96.08	100.00	98.39	98.28	100.00	100.00	93.18	53.85	97.30	NA	100.00	100.00	100.00	67.65	97.14	95.24	100.00	83.33	80.00	81.82	92.11	46.67	100.00	93.48	100.00	83.15	97.22	14.07	0.169727	0.663989
N	jcn_only_AA		chr20	+	chr20:30749169-30754775	chr20:30749169-30753097		chr20:30753098-30754775	chr20:30754775-30754776		100.00	100.00	99.49	100.00	100.00	100.00	98.46	98.94	100.00	100.00	100.00	92.31	100.00	100.00	98.26	95.74	100.00	100.00	100.00	98.88	96.30	100.00	100.00	100.00	100.00	100.00	98.65	100.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.763335	0.895110
K	intron_retention		chr12	+	chr12:58109754-58109871				chr12:58109753-58109754;chr12:58109871-58109872		13.82	10.09	16.36	9.09	7.14	NA	0.00	0.76	1.68	0.00	0.91	0.00	2.27	1.61	4.30	3.23	1.09	0.00	8.11	13.33	7.81	11.76	13.76	12.20	0.00	9.82	8.99	11.76	10.84	8.86	16.85	17.93	10.00	10.00	12.39	14.72	5.19	11.57	6.38	0.415500	1.000000
N	alternative_acceptor	UBL7	chr15	-	chr15:74740929-74741526;chr15:74740900-74741526	chr15:74740942-74741526		chr15:74740900-74740928;chr15:74740929-74740941	chr15:74740899-74740900;chr15:74740928-74740929		100.00	74.55	69.57	92.31	82.93	86.36	81.82	NA	80.00	69.23	77.27	83.33	72.41	NA	93.33	NA	80.00	76.92	69.23	87.50	78.38	NA	77.27	NA	76.74	86.67	81.82	NA	80.95	NA	83.33	84.62	71.43	100.00	81.25	78.95	73.48	87.09	13.61	0.017213	0.508745
K	intron_retention	MED10	chr5	-	chr5:6372715-6374436				chr5:6372714-6372715;chr5:6374436-6374437		0.00	0.00	4.55	4.00	1.52	1.92	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	2.63	4.65	1.69	2.50	5.26	0.00	2.22	2.08	0.00	0.00	0.00	0.00	0.00	5.00	0.00	4.08	4.48	0.00	1.11	1.11	0.705032	1.000000
K	intron_retention	GAS6	chr13	-	chr13:114537646-114538485				chr13:114537645-114537646;chr13:114538485-114538486		0.00	0.00	0.00	NA	0.00	NA	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.17	10.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.505308	1.000000
N	jcn_only_AA	ELL	chr19	-	chr19:18583693-18632730	chr19:18586744-18632730					2.70	0.00	0.00	NA	NA	NA	0.00	2.90	4.35	1.14	0.00	0.00	0.00	1.64	0.00	5.32	0.00	0.00	NA	3.17	NA	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	6.67	5.88	NA	0.00	5.71	1.59	0.00	2.80	2.80	0.025023	0.621886
N	alternative_acceptor	EDC4,METTL22	chr16	+	chr16:67917635-67917833;chr16:67917635-67917858	chr16:67917635-67917750		chr16:67917751-67917833;chr16:67917834-67917858	chr16:67917833-67917834;chr16:67917858-67917859		2.08	1.23	2.90	3.03	2.68	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.30	7.69	4.00	3.85	4.69	5.00	0.85	3.23	2.50	0.00	1.75	2.63	15.79	7.32	5.00	2.94	3.64	4.76	1.04	2.66	1.62	0.284684	0.709013
N	alternative_donor		chr17	-	chr17:73823527-73824910	chr17:73823527-73824037		chr17:73824038-73824910	chr17:73824910-73824911		100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	91.67	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.391002	0.657675
K	intron_retention	UBA52	chr19	+	chr19:18683418-18684102				chr19:18683417-18683418;chr19:18684102-18684103		14.81	8.57	21.05	31.25	8.00	26.32	8.33	NA	NA	0.00	13.33	0.00	0.00	NA	NA	5.00	14.29	NA	17.39	25.00	28.57	20.00	20.83	40.00	21.05	21.43	28.57	25.00	21.74	16.67	21.74	27.59	18.42	20.00	16.67	31.82	12.98	21.59	8.61	0.325609	1.000000
K	alternative_donor	PQBP1	chrX	+	chrX:48755377-48755774;chrX:48755366-48755774	chrX:48755298-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		42.86	45.45	16.67	18.52	29.09	42.86	13.51	27.27	12.12	15.38	28.00	30.77	23.68	16.67	11.11	26.87	19.05	30.77	38.24	18.52	24.44	20.00	25.00	29.03	52.00	29.17	16.67	22.22	26.67	19.51	28.57	20.00	38.24	30.56	34.78	23.08	38.24	27.92	-10.32	0.279519	0.648887
K	cassette	FMNL1	chr17	+	chr17:43322784-43323244	chr17:43322784-43322985;chr17:43323101-43323244		chr17:43322986-43323100			93.94	83.33	87.58	77.50	81.56	70.37	100.00	100.00	97.14	89.47	94.29	100.00	100.00	98.70	97.87	91.67	95.90	96.77	88.71	92.47	93.62	80.49	76.39	85.00	68.75	94.44	91.13	91.30	91.07	92.31	87.21	88.17	73.96	81.43	85.38	87.50	86.02	94.19	8.17	0.173443	0.709176
N	alternative_acceptor	LSM10	chr1	-	chr1:36859665-36863367	chr1:36859755-36863367		chr1:36859665-36859754	chr1:36859664-36859665		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	97.87	100.00	100.00	100.00	95.12	100.00	100.00	81.25	95.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.233216	0.685872
N	jcn_only_AD	RNF31,RP11-468E2.4	chr14	+	chr14:24621202-24624365	chr14:24624242-24624365		chr14:24621202-24624241	chr14:24621201-24621202		0.00	6.38	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.619962	0.813110
K	alternative_acceptor	RPLP0	chr12	-	chr12:120636797-120636920	chr12:120636804-120636920		chr12:120636797-120636803	chr12:120636796-120636797		94.00	92.79	96.06	100.00	100.00	100.00	93.83	90.00	90.42	92.99	92.99	93.97	91.78	95.65	92.64	94.65	90.39	90.88	90.17	95.12	92.50	96.21	100.00	100.00	95.74	85.71	94.17	100.00	100.00	100.00	90.00	97.35	90.76	100.00	100.00	100.00	92.28	92.00	-0.28	0.680000	0.880186
K	jcn_only_AD	CIDECP	chr3	-	chr3:10059756-10065243	chr3:10059756-10065213		chr3:10065214-10065243	chr3:10065243-10065244		15.38	0.00	8.33	0.00	0.00	NA	NA	27.27	14.29	7.14	0.00	NA	23.08	27.27	12.00	NA	20.00	NA	30.00	9.09	13.64	NA	0.00	NA	NA	14.29	18.18	10.00	25.00	NA	25.00	27.27	20.00	11.11	NA	NA	21.54	20.19	-1.35	0.849160	0.928405
N	alternative_acceptor	SRRM2	chr16	+	chr16:2819286-2820352;chr16:2819286-2820361;chr16:2819286-2819862	chr16:2819286-2819628		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		12.61	6.06	19.31	22.33	17.95	10.96	8.89	19.44	10.91	11.90	9.26	18.18	10.94	10.26	16.22	9.26	6.06	5.00	10.23	20.93	25.64	30.34	10.60	23.40	14.81	29.73	21.83	15.15	15.97	19.82	16.19	20.77	12.71	23.81	10.34	18.98	10.59	17.82	7.23	0.044470	0.570243
K	intron_retention	EIF4A1	chr17	+	chr17:7481235-7481659				chr17:7481234-7481235;chr17:7481659-7481660		69.90	65.61	72.92	64.90	63.04	54.84	NA	NA	NA	NA	70.00	NA	NA	NA	NA	55.56	72.73	NA	51.05	60.91	68.99	73.77	70.56	73.17	70.23	79.59	78.57	66.67	80.28	79.55	60.38	64.13	50.19	63.27	62.40	67.44	58.33	65.41	7.08	0.829587	1.000000
N	alternative_acceptor	RNH1	chr11	-	chr11:500000-500483;chr11:500015-500483	chr11:499924-500483		chr11:499924-499999;chr11:500000-500014	chr11:499923-499924;chr11:499999-500000		3.12	4.17	0.00	7.50	4.52	2.86	3.79	2.41	1.41	3.05	2.23	3.45	5.21	4.67	4.95	6.33	4.67	2.11	6.00	5.08	5.56	7.08	4.81	3.77	6.59	9.09	7.32	4.13	4.48	5.61	5.41	4.55	5.94	5.26	6.52	5.08	5.58	4.88	-0.70	0.770236	0.914744
N	alternative_acceptor	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45479438		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		4.17	0.00	6.67	NA	NA	NA	3.97	3.85	6.47	4.90	2.56	2.83	3.36	4.15	7.01	3.70	3.80	3.12	NA	5.26	6.25	0.00	0.00	5.26	0.00	4.79	7.07	5.63	6.45	4.92	0.00	0.00	NA	0.00	2.70	3.52	1.68	4.16	2.48	0.204626	0.668672
N	alternative_acceptor	SERPINB1	chr6	-	chr6:2836225-2836341;chr6:2833934-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2836258-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		58.73	100.00	66.67	98.53	100.00	97.64	71.43	71.50	70.00	80.72	83.78	88.44	68.42	74.82	72.83	68.12	100.00	83.33	66.67	93.22	70.59	94.29	70.27	96.84	42.42	66.87	70.59	100.00	100.00	99.26	76.24	80.00	68.09	94.51	100.00	96.24	68.25	73.16	4.91	0.657675	0.874938
N	cassette	SREK1IP1	chr5	-	chr5:64037028-64064331	chr5:64037028-64050141;chr5:64050190-64064331		chr5:64050142-64050189			100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	96.97	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	90.62	95.00	97.94	97.37	93.75	100.00	100.00	98.15	-1.85	0.131507	0.709176
K	jcn_only_AD	CMC1	chr3	+	chr3:28283304-28304781;chr3:28283393-28304781	chr3:28295257-28304781		chr3:28283304-28283392;chr3:28283393-28295256	chr3:28283303-28283304;chr3:28283392-28283393		11.11	9.09	8.51	NA	35.48	NA	13.51	0.00	2.22	14.29	28.12	9.09	12.12	19.05	11.11	21.43	20.00	23.08	0.00	5.56	5.13	30.00	26.32	NA	NA	0.00	5.88	25.00	9.52	0.00	4.17	8.11	19.05	30.00	37.50	10.00	12.12	4.87	-7.25	0.369210	0.657607
N	alternative_acceptor	CDK5RAP2	chr9	-	chr9:123151566-123152018	chr9:123151571-123152018		chr9:123151566-123151570	chr9:123151565-123151566		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	100.00	NA	NA	100.00	NA	NA	94.23	100.00	97.56	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	0.00	0.238596	0.692777
K	intron_retention		chr17	-	chr17:48216947-48217457				chr17:48216946-48216947;chr17:48217457-48217458		2.17	0.00	2.33	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	1.92	0.00	1.28	0.00	0.84	0.00	4.76	5.26	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.495619	1.000000
N	alternative_donor		chr19	-	chr19:4446918-4447555	chr19:4446918-4447546		chr19:4447547-4447555	chr19:4447555-4447556		97.50	100.00	100.00	100.00	100.00	94.74	94.37	95.24	94.44	100.00	96.61	100.00	98.46	100.00	95.00	100.00	92.00	91.30	100.00	100.00	94.34	100.00	97.73	100.00	100.00	92.11	100.00	100.00	94.34	100.00	95.74	94.64	100.00	100.00	97.22	100.00	100.00	96.62	-3.38	0.219754	0.595046
N	cassette	IGSF8	chr1	-	chr1:160061399-160062071	chr1:160061399-160061597;chr1:160061729-160062071		chr1:160061598-160061728			96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	SELO	chr22	+	chr22:50649341-50654145	chr22:50649341-50650896		chr22:50650897-50654145	chr22:50654145-50654146		0.00	0.00	0.00	5.26	5.26	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.00	0.00	7.14	0.00	8.33	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	4.88	4.35	0.00	0.00	0.00	8.16	0.00	0.00	0.00	0.747462	0.887098
K	intron_retention	ACE	chr17	+	chr17:61571832-61573754				chr17:61571831-61571832;chr17:61573754-61573755		11.11	8.70	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.69	3.23	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.601311	1.000000
K	intron_retention		chr12	+	chr12:57922793-57922942				chr12:57922792-57922793;chr12:57922942-57922943		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.477785	1.000000
N	jcn_only_AD	STK11	chr19	+	chr19:1221340-1221947	chr19:1221846-1221947		chr19:1221340-1221845	chr19:1221339-1221340		0.00	5.61	7.14	11.76	4.55	5.00	0.00	0.00	9.38	7.14	3.70	NA	0.00	15.38	4.88	3.57	6.45	NA	4.00	0.00	4.88	7.69	3.23	NA	0.00	18.75	13.51	5.00	3.45	7.14	0.00	2.00	0.00	8.70	0.00	8.70	0.00	0.00	0.00	0.321116	0.657607
N	alternative_acceptor	GPS1	chr17	+	chr17:80012852-80013037;chr17:80012852-80012967	chr17:80012852-80013040		chr17:80012968-80013037;chr17:80013038-80013040	chr17:80013037-80013038;chr17:80013040-80013041		31.25	42.86	33.33	NA	23.53	NA	28.89	10.00	35.71	21.05	18.75	41.67	31.37	10.00	31.03	22.22	30.56	19.05	25.00	38.46	26.67	NA	26.09	27.27	17.65	NA	29.17	20.00	30.77	20.00	NA	23.53	40.00	23.53	40.00	30.43	30.13	20.62	-9.51	0.352473	0.709013
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400787-46401041;chr11:46400787-46401018;chr11:46400787-46401044	chr11:46400787-46401003		chr11:46401004-46401018;chr11:46401019-46401041;chr11:46401042-46401044	chr11:46401018-46401019;chr11:46401041-46401042;chr11:46401044-46401045		4.55	7.14	3.33	0.00	5.71	NA	0.00	18.92	7.14	NA	6.25	NA	0.00	22.86	7.69	NA	0.00	NA	3.92	9.09	4.08	NA	3.23	NA	5.97	15.79	5.71	NA	7.69	NA	11.11	5.13	4.62	NA	5.26	0.00	4.27	13.45	9.18	0.012382	0.475629
K	alternative_first_exon	LST1	chr6	+	chr6:31554884-31554976;chr6:31554585-31554976;chr6:31554717-31554976	chr6:31554093-31554976	chr6:31554476-31554584;chr6:31554625-31554716	chr6:31553901-31554092			97.78	97.07	100.00	89.80	95.28	92.16	96.95	93.75	70.00	92.92	95.77	95.24	93.48	100.00	NA	94.33	94.30	90.65	94.57	100.00	93.85	97.78	94.25	92.86	97.69	100.00	100.00	92.31	95.08	90.00	100.00	96.43	96.48	95.56	96.55	94.90	96.72	100.00	3.28	0.070088	0.212652
K	cassette	ITGB1BP1	chr2	-	chr2:9554386-9560118;chr2:9554386-9563501;chr2:9552535-9563501	chr2:9554386-9558754,chr2:9552535-9558754;chr2:9558862-9563501,chr2:9558862-9560118		chr2:9558755-9558861			70.59	52.63	82.35	NA	87.50	NA	86.25	78.26	87.50	85.71	88.79	88.89	90.70	82.61	90.00	88.14	87.32	87.18	NA	68.42	76.92	76.92	84.62	100.00	NA	NA	57.14	85.71	85.71	83.33	64.29	58.82	71.43	93.10	87.18	78.95	78.84	70.59	-8.25	0.806276	0.936947
K	jcn_only_AA	HLA-F	chr6	+	chr6:29693084-29693228	chr6:29693084-29693223		chr6:29693224-29693228	chr6:29693228-29693229		97.33	95.45	96.36	95.83	96.15	94.91	96.67	97.50	97.42	98.18	96.95	96.57	97.37	97.14	97.38	97.50	96.08	95.28	92.65	95.41	94.88	100.00	100.00	95.58	93.71	97.11	97.65	96.18	94.38	95.30	94.92	94.81	95.62	96.79	97.53	96.12	95.53	97.12	1.59	0.158748	0.663989
N	alternative_acceptor	UBA7	chr3	-	chr3:49845361-49845452	chr3:49845384-49845452		chr3:49845361-49845383	chr3:49845360-49845361		9.23	0.00	14.29	NA	4.00	3.45	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.44	2.22	NA	0.00	4.35	0.00	5.32	0.00	4.55	0.00	2.94	8.20	5.88	13.33	0.00	0.00	4.08	0.00	4.88	4.88	0.370518	0.709013
N	alternative_donor	TCIRG1	chr11	+	chr11:67816905-67817129;chr11:67816899-67817129;chr11:67816922-67817129;chr11:67816758-67817129	chr11:67816762-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		63.55	68.38	64.39	64.94	65.05	71.23	92.56	89.26	92.73	95.45	89.05	97.56	85.98	85.98	76.62	90.28	91.15	100.00	75.00	64.68	73.42	64.04	67.37	73.68	75.14	63.64	60.83	64.34	65.61	68.48	69.91	64.89	78.49	65.81	64.91	71.05	76.81	67.30	-9.52	0.308452	0.650093
K	intron_retention	AD000671.6,U2AF1L4	chr19	-	chr19:36235047-36235223				chr19:36235046-36235047;chr19:36235223-36235224		14.29	34.21	21.43	25.00	35.82	20.00	12.50	NA	20.83	NA	20.00	NA	20.00	NA	25.00	16.67	10.00	NA	22.22	8.33	10.81	30.77	32.35	26.67	39.29	21.43	14.29	18.18	30.77	20.00	4.76	19.23	31.43	20.00	33.33	19.23	26.82	11.31	-15.52	0.199229	1.000000
N	cassette	SLC25A39	chr17	-	chr17:42398927-42399786	chr17:42398927-42399067;chr17:42399136-42399786		chr17:42399068-42399135			100.00	100.00	95.08	100.00	91.49	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	95.83	100.00	100.00	100.00	91.94	88.24	100.00	100.00	96.15	100.00	96.00	92.86	100.00	94.12	88.57	98.11	94.03	96.49	100.00	100.00	0.00	0.227934	0.709176
K	alternative_acceptor	ACIN1	chr14	-	chr14:23533695-23535174	chr14:23533698-23535174		chr14:23533695-23533697	chr14:23533694-23533695		65.22	82.35	64.95	NA	73.91	NA	69.57	76.67	75.86	70.00	63.04	61.54	68.42	66.67	72.73	63.33	60.42	73.33	54.55	70.00	75.00	78.26	66.20	72.22	70.59	67.21	66.67	72.00	72.22	70.00	64.71	70.45	NA	72.46	60.00	63.16	69.57	66.94	-2.63	0.891575	0.962353
N	jcn_only_AA	TAPBPL	chr12	+	chr12:6570105-6570324;chr12:6570105-6570436;chr12:6570105-6571199	chr12:6570105-6570289		chr12:6570290-6570324;chr12:6570325-6570436;chr12:6570437-6571199	chr12:6570324-6570325;chr12:6570436-6570437;chr12:6571199-6571200		0.00	0.00	0.00	0.00	2.63	0.00	5.88	0.00	9.76	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.363217	0.663989
K	alternative_last_exon	CD276,LINC01578	chr15	+	chr15:93426417-93428744	chr15:93426417-93426814	chr15:93428745-93428815	chr15:93426815-93427091			29.41	33.33	32.05	27.27	31.82	NA	20.00	20.00	16.95	29.03	19.35	22.58	22.73	19.23	15.38	25.00	23.33	29.17	18.75	28.57	20.59	38.10	30.77	47.62	NA	33.33	21.43	25.00	18.18	26.32	37.93	29.23	17.39	40.54	41.18	47.62	20.00	28.99	8.99	0.207125	0.432868
K	intron_retention	UNC13D	chr17	-	chr17:73827251-73827323				chr17:73827250-73827251;chr17:73827323-73827324		5.26	0.00	6.10	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	1.85	0.00	0.00	0.00	NA	4.35	12.50	8.77	NA	8.82	0.00	NA	6.90	9.68	9.09	15.00	NA	4.55	8.77	0.00	12.00	10.26	4.00	0.00	4.90	4.90	0.861904	1.000000
N	jcn_only_AA	H2AFY	chr5	-	chr5:134696289-134705095;chr5:134696298-134705095;chr5:134696471-134705095	chr5:134696295-134705095		chr5:134696289-134696294;chr5:134696295-134696297;chr5:134696298-134696470	chr5:134696288-134696289;chr5:134696294-134696295;chr5:134696297-134696298		62.00	49.58	54.97	47.37	62.56	50.00	56.47	53.03	56.52	57.37	55.81	57.23	57.01	57.97	53.73	51.56	55.87	57.45	58.62	52.38	50.00	58.28	56.72	53.14	51.52	54.90	56.84	57.79	56.27	59.77	62.00	60.00	62.07	58.37	57.05	61.38	56.74	56.44	-0.30	0.659502	0.848366
K	alternative_acceptor	CASP1	chr11	-	chr11:104905202-104905833;chr11:104905430-104905833	chr11:104905116-104905833		chr11:104905116-104905201;chr11:104905202-104905429	chr11:104905115-104905116;chr11:104905201-104905202		16.52	29.41	16.04	30.43	25.00	NA	11.54	10.34	12.78	9.70	17.44	17.07	13.70	11.86	8.91	12.26	9.09	10.00	NA	10.53	25.00	16.07	23.64	17.00	78.57	14.78	14.49	18.49	17.74	15.87	18.00	16.50	NA	15.07	22.22	13.61	21.55	13.32	-8.23	0.297634	0.709013
N	cassette	AP1M1	chr19	+	chr19:16344430-16345223	chr19:16344430-16345009;chr19:16345086-16345223		chr19:16345010-16345085			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	MIIP	chr1	+	chr1:12091461-12091778				chr1:12091460-12091461;chr1:12091778-12091779		6.78	4.31	4.55	4.00	1.92	2.79	3.23	1.96	2.94	0.00	0.00	0.00	0.00	0.00	2.65	0.00	3.33	2.78	2.29	2.08	0.76	5.56	4.35	7.69	0.87	0.00	4.88	0.00	3.03	2.27	0.00	6.82	1.99	0.00	4.76	8.33	2.14	0.98	-1.16	0.993898	1.000000
N	cassette	DNM2	chr19	+	chr19:10906116-10909161;chr19:10906116-10908055	chr19:10906116-10906736;chr19:10906876-10909161,chr19:10906876-10908055		chr19:10906737-10906875			78.23	100.00	84.18	NA	80.00	NA	77.27	71.29	81.69	58.33	56.10	55.26	65.91	74.00	82.05	57.75	71.43	64.71	NA	82.73	73.68	81.58	83.33	82.35	100.00	85.54	83.67	64.10	61.11	64.29	87.23	86.67	NA	84.00	87.06	83.15	88.63	80.48	-8.15	0.544595	0.816003
K	alternative_last_exon	LAMP2	chrX	-	chrX:119567898-119575584;chrX:119562482-119575584;chrX:119573149-119575584	chrX:119565318-119575584	chrX:119561682-119562481;chrX:119570349-119573148	chrX:119564681-119565317			76.62	91.42	76.54	90.37	89.33	92.96	61.31	54.47	60.53	61.90	60.78	62.29	50.83	49.10	53.04	50.72	49.30	54.58	91.81	74.77	90.38	77.12	80.42	75.13	92.39	71.59	76.76	70.00	75.57	78.18	88.59	86.49	93.71	76.55	76.85	78.33	91.62	73.18	-18.44	0.288688	0.491468
K	intron_retention	HAUS4,RP11-298I3.5	chr14	-	chr14:23416449-23416809				chr14:23416448-23416449;chr14:23416809-23416810		11.32	5.81	13.24	NA	3.70	0.00	1.03	0.00	0.00	1.92	1.05	0.00	0.00	0.00	1.75	0.00	1.33	0.00	2.27	7.14	0.00	0.00	6.82	NA	0.00	0.00	3.51	0.00	1.92	0.00	0.00	0.00	0.00	0.00	7.89	8.70	0.52	0.00	-0.52	0.790195	1.000000
N	jcn_only_AA		chr19	+	chr19:36123904-36124002;chr19:36123904-36123999	chr19:36123904-36123978		chr19:36123979-36123999;chr19:36124000-36124002	chr19:36123999-36124000;chr19:36124002-36124003		97.56	100.00	100.00	100.00	97.87	100.00	94.87	100.00	93.10	100.00	95.31	94.74	100.00	96.55	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	0.00	0.907846	0.968555
K	intron_retention		chr3	-	chr3:129288801-129289628				chr3:129288800-129288801;chr3:129289628-129289629		3.12	4.08	2.92	NA	7.69	NA	0.91	0.00	0.00	0.00	0.85	0.00	0.27	0.00	0.77	0.00	0.94	1.27	5.56	0.00	0.00	3.23	2.16	0.00	7.55	0.00	2.31	4.35	1.12	0.00	0.00	0.00	0.00	1.75	4.81	0.00	2.50	0.00	-2.50	0.289270	1.000000
N	jcn_only_AA	TLN1	chr9	-	chr9:35726532-35732071;chr9:35725725-35732071	chr9:35729397-35732071		chr9:35725725-35726531;chr9:35726532-35729396	chr9:35725724-35725725;chr9:35726531-35726532		0.00	0.00	0.00	NA	NA	NA	1.61	0.00	0.00	0.00	2.48	4.44	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	23.08	NA	16.67	0.00	0.00	0.00	0.00	0.00	14.29	NA	0.00	0.00	NA	4.76	0.00	0.00	0.00	0.00	0.00	0.193886	0.663989
K	cassette	NUCB2	chr11	+	chr11:17333668-17351673	chr11:17333668-17336932;chr11:17337023-17351673		chr11:17336933-17337022			86.67	100.00	100.00	88.89	94.44	88.64	94.74	92.31	100.00	96.43	92.86	89.74	100.00	NA	90.00	100.00	93.33	92.86	95.00	90.91	85.71	94.44	90.62	84.00	100.00	100.00	100.00	90.00	93.02	95.12	86.67	91.67	86.49	100.00	90.48	96.43	97.50	90.91	-6.59	0.183943	0.709176
K	intron_retention	ADIRF	chr10	+	chr10:88728363-88729956				chr10:88728362-88728363;chr10:88729956-88729957		NA	3.57	NA	0.00	0.00	0.33	9.09	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	16.67	0.00	0.00	5.17	1.22	2.68	13.33	0.00	0.00	2.78	0.00	18.18	7.14	0.00	0.00	11.76	5.36	2.12	13.33	11.21	0.475891	1.000000
K	intron_retention	PPCS	chr1	+	chr1:42923022-42925273				chr1:42923021-42923022;chr1:42925273-42925274		0.00	0.00	5.56	NA	0.00	NA	1.35	4.08	3.28	0.00	1.56	0.00	1.35	0.00	3.45	2.50	1.64	0.00	7.69	5.71	4.55	0.00	2.63	8.33	0.00	2.56	4.88	NA	5.00	0.00	3.33	1.79	0.00	4.00	5.26	2.86	0.68	2.95	2.27	0.951729	1.000000
N	jcn_only_AA		chr17	+	chr17:78223087-78223980;chr17:78223087-78224971;chr17:78223087-78223764;chr17:78223087-78223974	chr17:78223087-78225127		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		100.00	100.00	100.00	100.00	96.61	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	91.30	100.00	95.00	100.00	100.00	91.43	93.33	93.18	100.00	92.86	95.65	92.86	94.92	100.00	97.78	100.00	100.00	97.18	97.87	92.94	100.00	100.00	0.00	0.541880	0.778406
K	intron_retention		chr7	-	chr7:45005880-45006270				chr7:45005879-45005880;chr7:45006270-45006271		7.89	0.00	10.06	15.15	12.00	16.95	0.00	1.29	2.28	4.69	4.55	2.63	0.00	2.27	4.25	5.43	2.86	7.94	0.00	9.74	4.64	7.69	11.90	19.64	8.00	4.82	7.89	11.46	5.45	9.48	6.77	9.09	0.00	10.53	7.69	11.67	0.00	5.79	5.79	0.145953	1.000000
K	jcn_only_AD	DHRS3	chr1	-	chr1:12640695-12676563;chr1:12640695-12677158	chr1:12640695-12655998		chr1:12655999-12676563;chr1:12676564-12677158	chr1:12676563-12676564;chr1:12677158-12677159		0.00	0.00	11.11	NA	0.00	NA	1.32	2.38	20.00	0.00	2.02	6.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	9.38	NA	5.56	NA	0.00	0.00	10.20	NA	0.00	NA	8.33	12.50	0.00	NA	0.00	NA	0.00	1.19	1.19	0.169401	0.657607
K	intron_retention	NFE2L1	chr17	+	chr17:46128144-46128478				chr17:46128143-46128144;chr17:46128478-46128479		100.00	100.00	100.00	NA	NA	NA	100.00	98.02	94.89	98.31	98.20	83.87	100.00	96.69	96.60	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.345607	1.000000
K	cassette	AK2	chr1	-	chr1:33487305-33502336	chr1:33487305-33490042;chr1:33490169-33502336		chr1:33490043-33490168			93.33	100.00	100.00	NA	NA	NA	100.00	100.00	98.84	100.00	100.00	100.00	100.00	100.00	98.30	100.00	98.70	100.00	100.00	96.67	100.00	NA	100.00	100.00	NA	95.24	100.00	NA	100.00	100.00	100.00	NA	92.86	100.00	100.00	100.00	100.00	98.34	-1.66	0.592505	0.845910
N	jcn_only_AA	INPPL1	chr11	+	chr11:71941064-71941164	chr11:71941064-71941144		chr11:71941145-71941164	chr11:71941164-71941165		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	NA	NA	3.57	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	9.52	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_acceptor	CTNNB1	chr3	+	chr3:41280846-41281309	chr3:41280846-41281150		chr3:41281151-41281309	chr3:41281309-41281310		78.35	72.14	75.28	52.10	59.17	51.75	47.37	60.07	67.00	53.68	51.84	50.84	55.74	60.62	72.10	52.02	52.88	55.22	69.32	75.00	73.21	57.69	56.67	56.16	79.07	60.29	66.67	45.57	45.64	45.16	77.84	73.33	68.97	55.06	59.93	59.65	69.14	67.81	-1.33	0.603610	0.848883
N	cassette	CD44	chr11	+	chr11:35231602-35236398;chr11:35211520-35236398;chr11:35219794-35236398;chr11:35223335-35236398;chr11:35229754-35236398;chr11:35211613-35236398;chr11:35226188-35236398	chr11:35231602-35232792,chr11:35223335-35232792,chr11:35226188-35232792,chr11:35219794-35232792,chr11:35229754-35232792,chr11:35211613-35232792,chr11:35211520-35232792;chr11:35232997-35236398		chr11:35232793-35232996			4.81	4.00	7.84	26.26	11.43	28.64	3.29	3.75	5.97	23.73	6.75	23.22	4.25	7.39	10.36	27.22	10.70	30.93	2.19	4.36	8.59	17.88	10.88	23.10	3.23	6.28	11.88	25.69	12.79	29.70	3.94	8.27	4.55	17.05	11.11	21.70	3.65	4.58	0.94	0.059326	0.606785
N	cassette	MYO1F	chr19	-	chr19:8618322-8642190	chr19:8618322-8620520;chr19:8620681-8642190		chr19:8620521-8620680			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.88	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr20	+	chr20:61917066-61917717				chr20:61917065-61917066;chr20:61917717-61917718		3.57	0.00	1.89	NA	3.57	NA	3.03	0.00	0.00	0.00	2.08	0.00	0.00	0.00	2.56	5.41	0.00	0.00	0.00	3.03	4.76	5.26	5.56	2.17	0.00	6.90	5.77	9.38	2.56	6.45	8.11	7.25	0.00	6.52	3.51	10.45	0.00	3.30	3.30	0.401313	1.000000
K	jcn_only_AD	CMC1	chr3	+	chr3:28295257-28304781;chr3:28283393-28304781	chr3:28283304-28304781		chr3:28283304-28283392;chr3:28283393-28295256	chr3:28283303-28283304;chr3:28283392-28283393		85.19	90.91	89.13	NA	64.52	NA	86.49	100.00	95.56	85.71	71.88	90.91	87.88	80.95	86.67	78.57	76.67	76.92	100.00	94.44	94.87	70.00	73.68	NA	NA	100.00	91.18	75.00	90.48	100.00	95.83	91.89	80.95	70.00	62.50	90.00	87.88	95.13	7.25	0.458662	0.712187
N	jcn_only_AA	TNFRSF14	chr1	+	chr1:2489908-2491241;chr1:2489908-2491347;chr1:2489908-2491261;chr1:2489908-2490126	chr1:2489908-2490319		chr1:2490127-2490319;chr1:2490320-2491241;chr1:2491242-2491261;chr1:2491262-2491347	chr1:2490319-2490320;chr1:2491241-2491242;chr1:2491261-2491262;chr1:2491347-2491348		2.27	0.00	5.19	3.70	1.36	0.00	0.95	1.59	0.85	3.03	5.83	0.00	3.96	2.60	1.72	3.05	4.04	2.70	0.00	3.45	0.00	7.92	2.99	7.69	0.00	0.00	4.69	5.43	3.06	3.25	2.78	1.87	1.25	8.55	10.00	8.77	0.47	2.44	1.96	0.203683	0.663989
K	alternative_last_exon	SLC12A9,YAE1D1	chr7	+	chr7:100460450-100463340	chr7:100460450-100462981,chr7:100460450-100462908	chr7:100463341-100464630	chr7:100462982-100463157			0.00	1.96	0.00	14.29	3.85	8.33	2.22	0.00	0.00	0.00	0.00	0.00	6.15	0.00	4.00	0.00	0.00	10.00	3.17	0.00	1.56	NA	2.63	NA	2.13	0.00	1.79	0.00	3.57	0.00	0.00	2.94	1.59	NA	5.00	12.50	2.17	0.00	-2.17	0.008832	0.161746
N	cassette	SAP30BP	chr17	+	chr17:73667944-73689519;chr17:73667944-73687473	chr17:73667944-73686750;chr17:73686853-73687473,chr17:73686853-73689519		chr17:73686751-73686852			3.12	4.65	2.63	2.33	1.43	0.00	0.00	1.01	1.37	0.00	1.75	2.13	0.00	0.97	0.00	0.91	0.00	0.00	0.00	3.66	4.55	1.04	1.89	7.21	0.00	3.36	2.56	3.03	1.19	2.13	3.03	8.11	3.57	3.03	1.37	3.95	0.00	3.08	3.08	0.284987	0.709176
N	cassette	AIP	chr11	+	chr11:67254657-67257508;chr11:67250729-67257508	chr11:67254657-67256737,chr11:67250729-67256737;chr11:67256927-67257508		chr11:67256738-67256926			100.00	100.00	95.71	100.00	95.51	90.91	100.00	100.00	100.00	93.33	98.31	100.00	100.00	98.08	98.94	92.00	100.00	100.00	100.00	97.37	100.00	83.33	94.20	91.67	100.00	100.00	100.00	100.00	94.81	100.00	97.87	98.81	94.25	92.00	94.23	100.00	100.00	99.04	-0.96	0.890026	0.966777
N	alternative_acceptor	HLX	chr1	+	chr1:221055691-221057536	chr1:221055691-221055951		chr1:221055952-221057536	chr1:221057536-221057537		3.59	0.00	6.45	2.96	3.03	1.90	0.00	0.64	0.82	0.71	2.78	0.66	0.00	1.04	1.17	0.94	0.00	0.40	0.00	4.03	3.03	5.62	3.90	6.20	0.00	4.03	4.94	3.20	3.66	2.95	3.19	5.38	5.26	6.97	5.88	4.92	0.00	3.39	3.39	0.114518	0.605363
N	jcn_only_AA	CDK11A,RP1-283E3.8	chr1	-	chr1:1635435-1635661;chr1:1572482-1635661	chr1:1635586-1635661					75.00	58.82	65.00	58.33	65.71	63.64	87.50	100.00	82.35	NA	100.00	NA	89.47	72.22	73.68	83.33	90.00	NA	81.25	86.11	82.61	64.29	83.33	68.42	100.00	82.76	73.81	86.67	70.00	80.95	72.92	69.44	82.86	65.71	73.53	72.09	85.18	78.88	-6.30	0.803282	0.916365
K	cassette	SGSH	chr17	-	chr17:78188565-78190830	chr17:78188565-78188831;chr17:78188938-78190830		chr17:78188832-78188937			100.00	100.00	92.31	NA	NA	NA	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	97.06	100.00	NA	90.00	NA	NA	85.71	91.67	92.31	94.44	100.00	NA	NA	NA	100.00	93.75	NA	86.36	100.00	91.30	100.00	100.00	0.00	0.803101	0.936947
K	jcn_only_AA	MPDU1	chr17	+	chr17:7489116-7489268	chr17:7489116-7489263		chr17:7489264-7489268	chr17:7489268-7489269		94.29	100.00	94.44	100.00	100.00	NA	93.98	95.08	97.17	100.00	90.00	100.00	96.33	93.75	94.12	96.63	94.55	100.00	93.75	97.37	100.00	95.00	96.15	100.00	NA	100.00	91.67	92.59	100.00	95.00	93.94	95.56	92.86	90.74	95.00	95.38	93.98	94.69	0.70	0.834021	0.934708
K	cassette	TRIP4	chr15	+	chr15:64702028-64710739	chr15:64702028-64706283;chr15:64706411-64710739		chr15:64706284-64706410			90.70	100.00	100.00	NA	89.47	NA	90.48	96.00	100.00	100.00	100.00	100.00	100.00	96.59	97.44	100.00	100.00	100.00	NA	97.87	100.00	94.44	90.32	100.00	NA	93.94	100.00	83.33	100.00	93.94	89.19	90.62	66.67	100.00	88.89	95.74	95.24	94.97	-0.27	0.590941	0.844113
N	jcn_only_AA	STX8	chr17	-	chr17:9153963-9281868	chr17:9177627-9281868		chr17:9153963-9177626	chr17:9153962-9153963		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.387615	0.663989
N	alternative_acceptor	AP3S2,C15orf38-AP3S2	chr15	-	chr15:90395714-90414706;chr15:90380955-90414706;chr15:90404330-90414706	chr15:90408926-90414706		chr15:90380955-90395713;chr15:90395714-90404329;chr15:90404330-90408925	chr15:90380954-90380955;chr15:90395713-90395714;chr15:90404329-90404330		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	5.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	jcn_only_AA	DUS1L	chr17	-	chr17:80016285-80016656	chr17:80016293-80016656		chr17:80016285-80016292	chr17:80016284-80016285		75.00	83.70	75.61	94.59	83.58	92.68	79.10	90.91	84.62	88.24	90.62	82.61	85.71	70.00	86.05	87.23	88.46	88.89	79.44	85.19	83.54	77.78	91.30	78.95	78.67	NA	76.67	90.32	88.64	90.32	75.00	82.05	81.55	83.33	79.55	78.79	80.50	75.00	-5.50	0.616466	0.825909
K	cassette	ANO10	chr3	-	chr3:43616357-43621844	chr3:43616357-43618183;chr3:43618754-43621844		chr3:43618184-43618753			100.00	100.00	89.47	NA	NA	NA	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.12	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	94.44	100.00	95.45	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AD	AMZ2P1	chr17	-	chr17:62964500-62967040;chr17:62964500-62968651	chr17:62964500-62968435		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	NA	10.00	NA	0.00	NA	0.00	NA	0.00	NA	7.02	NA	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	7.50	6.25	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr5	-	chr5:6600346-6602573				chr5:6600345-6600346;chr5:6602573-6602574		6.90	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.48	3.77	1.16	NA	4.00	4.76	0.00	2.17	0.00	8.33	3.77	0.00	3.12	2.99	4.35	0.00	2.00	2.00	0.417264	1.000000
N	alternative_acceptor	CCL3	chr17	-	chr17:34416160-34416528;chr17:34416137-34416528	chr17:34416109-34416528		chr17:34416109-34416136;chr17:34416137-34416159	chr17:34416108-34416109;chr17:34416136-34416137		98.81	95.62	98.76	98.66	96.19	98.75	100.00	99.81	99.92	99.82	99.13	99.90	99.22	99.81	99.73	99.76	99.23	99.91	96.03	99.12	99.25	98.77	96.67	99.29	97.83	99.25	98.83	98.85	97.35	98.98	98.62	98.20	94.97	98.72	96.38	98.91	96.93	99.19	2.25	0.067050	0.584083
N	jcn_only_AD	SLC38A7	chr16	-	chr16:4409623-4410319	chr16:4409623-4410278		chr16:4410279-4410319	chr16:4410319-4410320		96.59	100.00	95.00	100.00	100.00	100.00	98.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	96.72	100.00	100.00	98.89	100.00	100.00	97.73	98.21	98.08	100.00	100.00	93.51	96.00	95.74	95.92	100.00	100.00	99.43	97.22	-2.21	0.623970	0.814721
K	alternative_donor	EIF4B	chr12	+	chr12:53428494-53431192	chr12:53428509-53431192		chr12:53428494-53428508	chr12:53428493-53428494		4.08	9.52	0.90	4.17	1.79	3.85	5.45	3.23	4.05	4.11	5.71	4.17	6.00	9.38	5.88	2.86	5.92	4.26	2.27	7.69	4.88	5.77	4.08	6.15	0.00	7.41	4.94	6.82	5.66	5.26	4.88	4.94	3.77	5.62	5.04	4.72	4.61	6.14	1.53	0.357736	0.650093
N	alternative_acceptor	SDF4	chr1	-	chr1:1154386-1158623;chr1:1154324-1158623;chr1:1154303-1158623	chr1:1154308-1158623		chr1:1154303-1154307;chr1:1154308-1154323;chr1:1154324-1154385	chr1:1154302-1154303;chr1:1154307-1154308;chr1:1154323-1154324		95.28	98.14	96.13	93.42	95.69	93.33	99.19	98.65	98.23	100.00	98.75	100.00	99.07	100.00	95.83	97.52	97.70	98.39	99.03	96.18	95.27	91.74	93.79	92.38	95.16	97.92	95.31	93.94	95.76	94.90	94.17	94.44	95.89	95.80	93.08	93.24	98.59	97.05	-1.53	0.551023	0.824249
K	cassette	SNX12	chrX	-	chrX:70280969-70282703	chrX:70280969-70281692;chrX:70281818-70282703		chrX:70281693-70281817			NA	91.67	100.00	NA	NA	NA	100.00	100.00	94.29	96.23	95.89	100.00	96.61	100.00	96.88	91.38	100.00	100.00	80.00	100.00	NA	92.86	100.00	100.00	NA	100.00	100.00	92.86	95.24	NA	NA	100.00	NA	91.67	93.75	100.00	94.14	100.00	5.86	0.167331	0.709176
K	intron_retention	NAGK	chr2	+	chr2:71297717-71297870				chr2:71297716-71297717;chr2:71297870-71297871		3.81	4.33	9.82	0.00	0.64	0.00	0.42	0.11	0.42	0.00	0.19	0.00	0.99	0.55	0.50	0.38	0.24	0.37	1.63	2.58	0.00	1.90	2.24	3.05	5.56	3.11	5.44	1.11	0.71	0.69	4.22	5.21	3.55	2.70	4.20	2.45	2.59	2.84	0.25	0.966047	1.000000
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7216159-7216347				chr17:7216158-7216159;chr17:7216347-7216348		2.36	2.95	4.72	3.25	1.75	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	3.37	1.73	5.88	4.12	5.88	0.66	0.93	0.96	0.00	5.43	2.80	4.51	5.11	4.04	2.82	3.53	2.63	1.13	1.65	0.51	0.960427	1.000000
K	intron_retention	TRIM28	chr19	+	chr19:59060144-59060228				chr19:59060143-59060144;chr19:59060228-59060229		8.62	4.26	8.82	3.57	8.20	5.88	0.82	0.00	0.00	0.00	0.74	0.00	0.65	1.47	0.78	0.73	0.59	0.00	5.88	10.00	8.77	9.30	5.68	8.16	10.87	5.71	3.57	2.08	5.95	3.51	28.26	13.86	18.60	5.66	5.88	9.43	5.07	7.16	2.09	0.898852	1.000000
K	intron_retention	KMT2B	chr19	+	chr19:36228844-36228962				chr19:36228843-36228844;chr19:36228962-36228963		0.00	0.00	5.56	0.00	3.12	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	3.33	4.55	0.00	2.78	1.49	0.00	0.00	0.00	0.787986	1.000000
N	alternative_acceptor		chr12	+	chr12:53432196-53433033;chr12:53432196-53433018	chr12:53432196-53433021		chr12:53433019-53433021;chr12:53433022-53433033	chr12:53433021-53433022;chr12:53433033-53433034		95.24	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	97.22	100.00	96.43	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	96.15	95.35	98.33	98.18	95.00	97.73	100.00	98.08	-1.92	0.209521	0.670733
N	jcn_only_AD		chr1	-	chr1:54405771-54411909	chr1:54405771-54411227		chr1:54411228-54411909	chr1:54411909-54411910		100.00	100.00	86.36	NA	100.00	NA	78.26	100.00	82.35	100.00	100.00	100.00	79.31	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	100.00	85.71	NA	NA	100.00	100.00	NA	88.00	100.00	100.00	100.00	NA	NA	100.00	NA	89.66	100.00	10.34	0.181885	0.657607
N	alternative_acceptor	MED25	chr19	+	chr19:50306447-50306572	chr19:50306447-50306543		chr19:50306544-50306572	chr19:50306572-50306573		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	TMEM176A	chr7	+	chr7:150498057-150498623;chr7:150498162-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497917-150498623;chr7:150497246-150498623	chr7:150498310-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		0.00	NA	0.00	NA	NA	NA	28.12	12.28	7.69	27.27	33.33	22.22	6.67	4.69	1.72	7.14	5.26	0.00	5.56	1.69	8.11	0.00	5.13	0.00	0.00	2.33	3.64	7.14	8.11	8.33	4.00	1.59	NA	NA	7.69	0.00	6.12	3.17	-2.95	0.416200	0.677967
K	cassette	CTSA	chr20	+	chr20:44520667-44521036	chr20:44520667-44520911;chr20:44520963-44521036		chr20:44520912-44520962			100.00	100.00	98.32	100.00	98.36	100.00	99.70	98.84	99.74	99.39	99.84	98.89	99.64	98.84	98.29	99.39	99.65	99.29	93.75	99.12	100.00	97.95	99.26	99.39	100.00	99.09	99.14	98.93	99.05	98.52	99.31	98.61	100.00	99.22	98.74	98.83	99.85	99.11	-0.74	0.747528	0.918239
K	intron_retention	CHTOP	chr1	+	chr1:153609130-153610770				chr1:153609129-153609130;chr1:153610770-153610771		5.88	9.09	12.16	NA	8.00	10.00	6.38	7.69	15.22	11.32	8.33	5.77	10.91	9.76	14.81	9.86	14.58	4.00	7.14	2.63	13.64	8.33	9.30	11.11	NA	6.52	13.33	8.00	10.00	3.57	0.00	6.38	9.09	4.88	11.63	6.12	9.09	6.20	-2.89	0.810845	1.000000
K	jcn_only_AD	FDXR	chr17	-	chr17:72868259-72868893;chr17:72868259-72868990	chr17:72868259-72868367		chr17:72868368-72868893;chr17:72868894-72868990	chr17:72868893-72868894;chr17:72868990-72868991		9.09	13.33	12.50	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	7.14	0.00	0.00	NA	NA	NA	NA	0.00	2.94	NA	NA	NA	0.00	4.69	14.29	20.00	20.00	NA	7.14	0.00	-7.14	0.263097	0.657607
K	intron_retention	CSF1R	chr5	-	chr5:149435905-149436849				chr5:149435904-149435905;chr5:149436849-149436850		1.64	0.00	2.45	2.50	2.13	0.00	0.15	0.00	0.00	0.60	0.47	0.00	0.57	0.63	1.11	0.62	0.44	0.72	1.43	0.74	0.84	1.43	1.84	1.55	7.38	1.24	2.02	1.44	1.08	1.05	0.00	1.52	1.47	1.84	2.58	1.42	1.00	0.69	-0.31	0.639787	1.000000
N	coord_cassette	CDK5RAP3	chr17	+	chr17:46051815-46054077	chr17:46051815-46052537;chr17:46052704-46052879;chr17:46053005-46053234;chr17:46053380-46054077		chr17:46052538-46052703;chr17:46052880-46053004;chr17:46053235-46053379			100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	86.67	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
N	cassette	PARVG	chr22	+	chr22:44594603-44602196	chr22:44594603-44601636;chr22:44601710-44602196		chr22:44601637-44601709			100.00	100.00	100.00	94.00	97.91	97.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.15	98.25	98.83	100.00	98.31	100.00	97.56	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.52	100.00	100.00	97.67	100.00	100.00	0.00	0.207419	0.709176
K	intron_retention		chr2	+	chr2:178081321-178081403				chr2:178081320-178081321;chr2:178081403-178081404		3.49	2.94	3.76	2.86	0.00	0.00	0.00	0.00	0.00	0.22	0.00	0.00	0.82	0.00	0.91	0.00	0.00	0.00	0.00	3.45	1.14	2.25	1.52	2.88	0.00	1.89	3.33	1.90	0.63	0.58	11.76	6.02	0.00	1.65	2.27	2.38	0.00	2.67	2.67	0.512760	1.000000
N	alternative_last_exon		chr1	+	chr1:22963196-22964082;chr1:22963196-22965325	chr1:22963196-22964102	chr1:22965326-22966101	chr1:22964103-22964272			84.63	93.07	98.59	98.23	93.29	98.76	89.00	91.48	97.85	98.01	97.72	93.40	85.07	84.33	99.38	91.98	88.80	98.23	87.38	87.21	90.72	96.36	98.46	97.19	90.08	94.49	88.45	94.88	92.01	98.51	98.62	93.89	85.48	96.31	88.49	98.65	88.19	89.34	1.16	0.522027	0.669635
N	cassette	NPL	chr1	+	chr1:182758941-182761366;chr1:182759040-182760610;chr1:182759040-182761366	chr1:182759040-182760382,chr1:182758941-182760382;chr1:182760466-182760610,chr1:182760466-182761366		chr1:182760383-182760465			5.00	0.00	7.79	NA	4.35	NA	3.06	1.64	5.26	7.02	3.78	7.14	2.12	2.99	5.56	4.35	6.21	4.00	0.00	3.61	0.00	5.00	3.36	7.06	NA	3.92	3.85	4.44	3.74	4.00	2.63	6.17	0.00	4.35	3.12	4.94	0.00	3.30	3.30	0.023896	0.405319
K	intron_retention	CDK5RAP3	chr17	+	chr17:46053380-46054077				chr17:46053379-46053380;chr17:46054077-46054078		3.19	3.46	3.97	1.67	3.50	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	3.68	3.80	1.80	1.64	3.97	1.75	2.11	1.54	4.96	1.64	0.00	1.30	3.75	6.06	3.91	1.33	4.55	2.97	2.79	2.37	-0.42	0.372676	1.000000
N	alternative_last_exon		chr8	+	chr8:29953045-29994787	chr8:29953045-29959413	chr8:29994788-29995864	chr8:29959414-29959489			96.15	91.89	97.83	NA	94.12	NA	100.00	96.55	97.44	100.00	98.04	95.65	97.96	100.00	96.97	100.00	100.00	100.00	64.29	95.00	92.31	NA	96.43	NA	NA	94.44	92.86	NA	100.00	NA	93.33	97.44	76.47	NA	84.21	92.31	91.89	95.58	3.69	0.226749	0.447213
K	jcn_only_AD	CDK5RAP3,RP11-6N17.9	chr17	+	chr17:46048676-46050884	chr17:46048774-46050884					100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.657607
N	cassette	MOB3A	chr19	-	chr19:2078679-2096224;chr19:2078679-2095239	chr19:2078679-2085173;chr19:2085328-2095239,chr19:2085328-2096224		chr19:2085174-2085327			100.00	100.00	90.57	NA	NA	NA	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	jcn_only_AD	CTSK	chr1	-	chr1:150779283-150779724;chr1:150779283-150779605	chr1:150779283-150780689		chr1:150779606-150779724;chr1:150779725-150780689	chr1:150779724-150779725;chr1:150780689-150780690		99.62	100.00	100.00	100.00	100.00	NA	98.94	98.88	100.00	100.00	98.65	100.00	100.00	97.92	100.00	98.33	100.00	97.78	100.00	100.00	100.00	93.88	97.67	97.47	100.00	95.74	100.00	94.87	98.21	100.00	100.00	100.00	100.00	98.28	100.00	97.78	100.00	99.25	-0.75	0.158724	0.657607
N	alternative_acceptor	PEF1	chr1	-	chr1:32096352-32098095;chr1:32096316-32098095;chr1:32096322-32098095;chr1:32096334-32098095	chr1:32096444-32098095		chr1:32096316-32096321;chr1:32096322-32096333;chr1:32096334-32096351;chr1:32096352-32096443	chr1:32096315-32096316;chr1:32096321-32096322;chr1:32096333-32096334;chr1:32096351-32096352		95.12	94.55	98.72	100.00	95.74	83.33	100.00	95.77	96.67	92.19	96.05	96.30	96.72	100.00	100.00	95.52	100.00	93.62	86.96	100.00	98.08	100.00	98.08	95.65	86.36	98.63	97.59	89.13	97.92	95.92	95.45	97.18	87.50	100.00	100.00	92.96	91.03	97.20	6.17	0.072549	0.585944
K	jcn_only_AD	EXOSC4	chr8	+	chr8:145134925-145135144	chr8:145135053-145135144		chr8:145134925-145135052	chr8:145134924-145134925		95.92	100.00	100.00	96.23	100.00	98.89	95.45	96.00	95.83	100.00	100.00	91.67	100.00	100.00	100.00	97.92	100.00	NA	97.96	96.67	98.86	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.23	98.67	100.00	96.97	100.00	99.34	98.34	-1.00	0.617758	0.811678
N	cassette	SERPINB8	chr18	+	chr18:61649073-61652326	chr18:61649073-61650812;chr18:61650956-61652326		chr18:61650813-61650955			79.55	100.00	83.02	92.86	85.42	79.31	95.71	88.46	90.91	95.76	90.00	94.94	97.59	91.23	92.75	97.64	95.14	94.19	92.86	92.00	90.91	90.91	94.94	87.65	100.00	91.18	91.67	94.44	95.40	97.96	75.41	82.00	70.00	91.14	86.84	87.06	96.65	89.82	-6.83	0.276856	0.709176
K	cassette	CIRBP	chr19	+	chr19:1271036-1271327	chr19:1271036-1271119;chr19:1271246-1271327		chr19:1271120-1271245			100.00	96.97	95.62	100.00	97.94	100.00	100.00	99.01	97.74	100.00	100.00	98.61	98.94	97.25	99.28	100.00	100.00	100.00	95.52	93.94	93.75	98.86	100.00	97.70	100.00	97.12	97.30	100.00	99.12	98.73	92.17	94.38	91.46	98.10	98.68	99.33	97.95	97.19	-0.77	0.761872	0.925284
N	alternative_last_exon	CCZ1B	chr7	-	chr7:6838911-6844568	chr7:6841155-6844568	chr7:6837992-6838910	chr7:6840996-6841154			87.10	71.67	88.46	77.78	73.58	50.00	80.00	79.31	78.95	91.30	88.24	87.23	92.86	94.44	91.43	89.47	93.75	93.75	46.67	76.00	NA	80.00	77.78	72.00	NA	88.00	87.18	85.71	82.76	81.82	52.63	58.06	31.82	52.94	52.94	55.17	71.67	83.20	11.53	0.279945	0.491468
N	alternative_last_exon	C2	chr6	+	chr6:31912807-31913134,chr6:31912807-31913238;chr6:31912807-31914149	chr6:31912807-31912954	chr6:31914150-31914383	chr6:31912955-31913449			94.30	95.27	93.21	98.32	99.05	97.89	98.73	96.23	96.04	96.40	97.93	92.94	99.19	97.25	97.87	100.00	95.56	96.30	95.73	93.48	95.60	98.88	98.99	97.27	95.46	96.09	96.51	98.90	97.75	97.94	97.18	96.86	97.60	97.94	97.83	98.46	96.66	96.16	-0.50	0.220454	0.441897
N	jcn_only_AD	DPP7	chr9	-	chr9:140006207-140006392;chr9:140006207-140006327	chr9:140006207-140006324		chr9:140006325-140006327;chr9:140006328-140006392	chr9:140006327-140006328;chr9:140006392-140006393		96.67	98.04	96.67	97.87	96.69	97.45	98.05	95.41	95.83	93.58	95.52	96.21	98.73	96.88	100.00	98.34	96.47	100.00	98.37	98.89	97.39	97.22	95.96	98.39	99.77	99.10	100.00	97.74	98.39	98.42	97.81	98.50	97.70	97.48	97.99	97.47	98.21	97.34	-0.87	0.172052	0.657607
N	alternative_acceptor	MOV10	chr1	+	chr1:113241412-113242129;chr1:113241412-113242079	chr1:113241412-113242306		chr1:113242080-113242129;chr1:113242130-113242306	chr1:113242129-113242130;chr1:113242306-113242307		88.89	96.55	84.62	NA	91.67	90.32	100.00	93.75	94.87	NA	100.00	81.48	100.00	94.26	91.43	93.75	93.75	81.82	100.00	90.10	90.91	90.00	100.00	77.61	85.71	84.65	87.76	75.00	90.48	81.40	89.07	91.45	100.00	70.37	95.00	78.32	100.00	89.58	-10.42	0.034685	0.560254
N	intron_retention		chrX	+	chrX:12993778-12994364				chrX:12993777-12993778;chrX:12994364-12994365		100.00	100.00	100.00	96.97	100.00	100.00	100.00	88.46	89.29	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	82.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	95.95	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.629122	1.000000
N	alternative_acceptor	SRRM2	chr16	+	chr16:2820467-2820610;chr16:2820467-2820604	chr16:2820467-2820607		chr16:2820605-2820607;chr16:2820608-2820610	chr16:2820607-2820608;chr16:2820610-2820611		1.54	1.75	1.49	0.00	1.35	2.38	0.00	5.88	3.23	4.00	6.25	0.00	3.12	0.00	2.56	3.70	2.44	10.00	6.00	3.03	0.00	2.78	2.41	2.94	5.88	5.56	8.45	0.00	5.36	4.00	1.96	1.32	2.94	0.00	2.08	2.90	3.03	2.50	-0.54	0.835787	0.940678
K	intron_retention		chr18	+	chr18:21110577-21111588				chr18:21110576-21110577;chr18:21111588-21111589		61.49	49.46	37.93	71.71	57.92	61.44	58.06	42.37	31.43	62.50	59.18	30.77	67.86	42.86	26.47	62.12	50.00	35.00	48.64	47.45	50.82	72.03	63.83	64.58	54.38	48.57	49.41	68.80	63.25	54.02	47.98	29.19	51.21	70.31	56.18	55.38	52.80	47.72	-5.08	0.355297	1.000000
N	alternative_acceptor	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407141-4407386;chr11:4407110-4407386;chr11:4406413-4407386	chr11:4407084-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		99.22	98.08	100.00	91.84	93.55	90.35	100.00	95.88	100.00	98.53	100.00	98.58	100.00	98.33	99.32	100.00	100.00	100.00	81.25	97.08	92.73	100.00	95.83	97.73	79.17	95.35	100.00	98.33	100.00	95.95	98.41	99.19	86.49	100.00	100.00	98.62	92.28	97.70	5.42	0.159497	0.660713
K	jcn_only_AD	FZR1	chr19	+	chr19:3534512-3534792	chr19:3534521-3534792		chr19:3534512-3534520	chr19:3534511-3534512		6.56	0.00	7.69	18.75	5.00	9.38	7.69	14.63	8.57	16.13	12.00	14.29	7.14	15.15	12.50	17.95	6.67	6.06	5.13	10.20	2.17	13.79	13.16	19.23	10.45	4.11	10.42	14.29	12.50	20.83	9.09	3.90	7.81	13.95	13.89	10.71	7.42	9.64	2.23	0.150991	0.657607
K	intron_retention	ACAA1	chr3	-	chr3:38167833-38168000				chr3:38167832-38167833;chr3:38168000-38168001		54.55	54.39	61.29	42.86	52.50	30.00	5.88	9.30	6.49	0.00	4.76	5.00	14.89	10.00	4.62	4.00	4.76	0.00	48.39	56.67	23.86	58.33	54.29	56.25	50.00	41.94	43.28	37.04	41.67	34.48	53.33	59.42	40.00	47.62	58.97	54.17	44.20	47.63	3.44	0.989831	1.000000
K	alternative_acceptor	DNAJC4	chr11	+	chr11:64000087-64000175	chr11:64000087-64000172		chr11:64000173-64000175	chr11:64000175-64000176		7.41	9.01	7.14	9.09	6.67	4.62	9.43	13.33	6.06	6.90	7.27	11.11	5.36	10.00	3.33	7.14	9.76	6.67	9.86	13.33	8.22	4.35	8.77	7.69	10.13	6.25	8.33	8.70	8.93	8.11	14.71	9.84	6.17	5.13	11.11	10.00	9.22	11.66	2.45	0.166169	0.660713
N	jcn_only_AA	LILRB1	chr19	+	chr19:55147061-55147153;chr19:55147061-55147947;chr19:55147061-55178293	chr19:55147061-55147944		chr19:55147154-55147944;chr19:55147945-55147947;chr19:55147948-55178293	chr19:55147944-55147945;chr19:55147947-55147948;chr19:55178293-55178294		39.07	55.07	37.55	37.50	38.10	30.43	41.10	40.16	46.79	43.16	47.22	37.14	51.52	40.03	40.82	36.08	35.87	44.29	36.62	37.36	38.93	40.31	38.06	36.36	40.00	40.19	43.99	39.16	44.62	36.28	41.08	40.52	47.83	37.33	35.59	38.10	44.47	40.09	-4.37	0.111942	0.663989
N	jcn_only_AD	ZBTB8OS	chr1	-	chr1:33100394-33116033;chr1:33100394-33116002;chr1:33100394-33116385;chr1:33100394-33116025;chr1:33100394-33102842	chr1:33100394-33116029		chr1:33102843-33116002;chr1:33116003-33116025;chr1:33116026-33116029;chr1:33116030-33116033;chr1:33116034-33116385	chr1:33116002-33116003;chr1:33116025-33116026;chr1:33116029-33116030;chr1:33116033-33116034;chr1:33116385-33116386		7.69	15.69	4.76	9.09	11.11	7.14	4.65	9.52	6.52	6.00	7.69	5.41	8.51	11.54	9.62	6.38	5.41	5.13	9.30	10.34	8.47	9.09	10.71	15.79	6.67	11.11	4.88	11.11	11.67	6.25	6.90	13.95	11.11	6.06	3.03	11.43	8.91	9.93	1.02	0.913774	0.958253
K	jcn_only_AA	CSE1L,MTG2	chr20	+	chr20:47711501-47712885	chr20:47711501-47712712		chr20:47712713-47712885	chr20:47712885-47712886		0.00	0.00	5.41	8.00	6.25	0.00	7.84	0.00	0.00	0.00	5.45	0.00	2.94	18.18	4.26	3.28	6.98	0.00	4.17	0.00	6.45	2.13	8.20	8.70	0.00	20.00	6.06	8.33	7.14	8.82	6.67	10.53	2.63	8.82	3.39	3.45	2.79	3.33	0.55	0.300633	0.663989
K	intron_retention	AUP1	chr2	-	chr2:74754966-74755066				chr2:74754965-74754966;chr2:74755066-74755067		11.11	18.99	20.00	13.19	16.25	14.29	0.72	0.00	2.63	0.58	2.14	0.68	1.74	1.20	3.80	3.23	1.12	0.61	18.00	15.38	12.85	24.32	22.16	15.57	14.42	14.29	12.41	12.80	11.70	11.49	23.14	22.93	23.03	19.17	15.49	17.81	16.21	12.70	-3.51	0.976351	1.000000
K	alternative_last_exon	RPL31	chr2	+	chr2:101622534-101622819,chr2:101622534-101640086;chr2:101622534-101622811;chr2:101622534-101634350,chr2:101622534-101634320	chr2:101622534-101635459	chr2:101622812-101623729;chr2:101634351-101634751	chr2:101635460-101636190			7.41	2.44	4.08	1.89	2.27	0.95	8.75	5.88	8.57	11.11	13.21	6.90	10.81	6.67	12.50	6.02	16.67	12.00	3.95	4.35	3.23	7.84	11.96	12.00	2.37	5.56	12.50	6.12	5.45	5.62	3.12	3.85	1.23	4.17	4.62	3.80	3.20	5.72	2.52	0.749260	0.839533
K	cassette	HM13	chr20	+	chr20:30137925-30147413	chr20:30137925-30142548;chr20:30142633-30147413		chr20:30142549-30142632			97.92	98.67	97.85	95.00	96.15	100.00	98.41	98.59	97.79	98.65	97.01	98.58	98.39	98.31	98.44	98.48	98.91	98.13	98.05	98.10	99.00	99.22	97.33	98.71	95.61	94.55	97.33	96.00	96.99	97.85	98.89	99.04	96.63	96.80	98.79	98.58	98.22	98.20	-0.02	0.905647	0.971243
N	alternative_donor	SEC13	chr3	-	chr3:10357121-10359733	chr3:10357121-10357363		chr3:10357364-10359733	chr3:10359733-10359734		0.00	6.25	2.04	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
K	intron_retention	PRPF40A	chr2	-	chr2:153515524-153515606				chr2:153515523-153515524;chr2:153515606-153515607		8.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	1.85	6.98	3.57	6.25	1.67	0.00	1.15	0.00	0.96	0.96	0.719040	1.000000
K	intron_retention	TGOLN2	chr2	-	chr2:85553928-85554101				chr2:85553927-85553928;chr2:85554101-85554102		86.84	93.62	90.84	81.82	80.77	80.00	88.41	83.18	89.23	82.64	86.94	85.19	82.35	88.89	84.73	84.56	86.97	90.43	76.92	88.14	70.97	95.65	91.30	87.76	100.00	88.33	92.65	84.62	84.78	86.67	82.35	86.67	70.00	90.91	91.86	90.91	85.38	87.49	2.11	0.972932	1.000000
K	intron_retention	TAPBPL	chr12	+	chr12:6566710-6566834				chr12:6566709-6566710;chr12:6566834-6566835		93.75	100.00	94.74	100.00	100.00	100.00	100.00	86.36	94.44	96.30	97.44	100.00	100.00	100.00	91.67	87.50	93.10	100.00	92.00	97.44	91.30	100.00	93.65	92.86	100.00	93.33	100.00	93.75	92.68	91.89	83.33	91.80	88.89	96.30	96.00	96.08	100.00	93.54	-6.46	0.385320	1.000000
K	alternative_acceptor	METTL5	chr2	-	chr2:170669017-170671986	chr2:170669035-170671986		chr2:170669017-170669034	chr2:170669016-170669017		5.88	2.30	0.00	0.00	1.56	2.78	0.00	0.00	0.00	0.00	0.00	0.00	4.35	NA	5.00	0.00	0.00	0.00	1.45	0.00	2.50	0.00	4.00	NA	4.55	0.00	0.00	0.00	0.00	5.88	NA	0.00	1.61	0.00	0.00	0.00	1.96	0.00	-1.96	0.606537	0.848883
N	cassette	C1QBP	chr17	-	chr17:5336736-5338192	chr17:5336736-5336988;chr17:5337088-5338192		chr17:5336989-5337087			100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	85.71	100.00	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.512254	0.791208
N	jcn_only_AD	NTAN1	chr16	-	chr16:15138265-15141274;chr16:15138265-15140213	chr16:15138265-15141298		chr16:15140214-15141274;chr16:15141275-15141298	chr16:15141274-15141275;chr16:15141298-15141299		91.14	100.00	100.00	95.24	95.33	93.33	97.30	95.77	94.59	98.02	97.66	96.70	100.00	94.52	100.00	94.81	97.78	96.92	95.65	98.08	95.00	97.83	95.16	95.16	100.00	92.75	97.37	94.34	96.43	100.00	88.89	91.18	81.48	95.10	95.00	95.54	98.65	93.63	-5.02	0.516373	0.754861
K	alternative_donor	PNRC1	chr6	+	chr6:89790693-89793471	chr6:89791154-89793471		chr6:89790693-89791153	chr6:89790692-89790693		100.00	100.00	95.63	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.26	NA	95.70	96.63	93.24	94.03	96.45	81.82	100.00	100.00	96.50	100.00	100.00	95.83	96.41	NA	100.00	100.00	96.41	100.00	100.00	0.00	0.543996	0.780071
K	intron_retention		chr1	-	chr1:173835706-173835898				chr1:173835705-173835706;chr1:173835898-173835899		0.00	0.00	1.89	1.61	1.89	0.00	0.00	0.00	0.00	3.70	0.00	0.00	1.30	0.00	0.00	3.80	7.89	NA	2.74	7.14	3.03	4.05	2.11	2.78	0.00	4.55	2.04	1.92	2.94	2.78	6.67	0.00	2.53	3.64	6.25	6.00	0.65	2.27	1.62	0.600604	1.000000
K	jcn_only_AA	DGCR14	chr22	-	chr22:19125831-19126671	chr22:19125993-19126671		chr22:19125831-19125992	chr22:19125830-19125831		11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	5.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.219446	0.663989
K	jcn_only_AA	ARRDC1	chr9	+	chr9:140507459-140507864;chr9:140507459-140507911	chr9:140507459-140507874		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	jcn_only_AA	FBRSL1,ORMDL2	chr12	+	chr12:56211897-56212874	chr12:56211897-56212782		chr12:56212783-56212874	chr12:56212874-56212875		100.00	100.00	90.32	100.00	93.33	100.00	100.00	100.00	100.00	100.00	94.12	94.00	95.65	100.00	98.65	96.00	98.28	96.72	100.00	100.00	100.00	100.00	91.89	100.00	100.00	100.00	100.00	95.56	100.00	95.00	100.00	100.00	93.75	83.33	88.89	97.73	100.00	100.00	0.00	0.183156	0.663989
K	intron_retention		chr7	-	chr7:100174401-100174524				chr7:100174400-100174401;chr7:100174524-100174525		22.61	24.31	27.64	14.29	23.53	11.54	3.03	3.77	0.00	0.00	3.85	0.00	3.77	3.23	8.89	0.00	0.00	3.45	14.12	23.75	14.29	14.29	18.31	13.64	20.91	15.15	18.52	31.82	13.46	9.52	17.11	22.56	18.56	23.53	24.49	23.81	16.34	16.13	-0.21	0.995711	1.000000
K	intron_retention	CD300C	chr17	-	chr17:72537876-72538999				chr17:72537875-72537876;chr17:72538999-72539000		3.83	3.57	3.21	6.90	7.14	8.70	2.94	1.96	0.00	6.56	5.41	4.76	1.54	0.00	2.17	1.56	2.63	7.69	7.32	3.45	3.92	7.69	4.44	0.00	0.00	2.13	3.59	4.65	2.78	0.00	1.82	1.73	5.56	4.17	4.35	2.56	3.25	2.04	-1.21	0.328567	1.000000
N	jcn_only_AD	SAT2	chr17	-	chr17:7530733-7530859;chr17:7530733-7530870	chr17:7530733-7530874					15.00	10.11	9.09	0.00	7.32	12.90	7.69	6.41	8.93	0.00	9.09	0.00	11.36	8.60	9.52	5.00	8.82	5.56	6.67	10.94	11.11	9.09	10.61	11.76	8.51	10.61	7.69	7.69	7.69	5.56	13.33	11.54	11.11	8.33	8.16	8.11	9.31	10.77	1.46	0.320342	0.657607
N	cassette	TMEM150B	chr19	-	chr19:55832462-55836639;chr19:55832413-55836639	chr19:55832413-55834015,chr19:55832462-55834015;chr19:55834112-55836639		chr19:55834016-55834111			95.77	96.30	90.00	NA	NA	NA	100.00	94.34	93.23	100.00	94.74	98.00	100.00	96.47	96.23	90.48	100.00	96.30	NA	98.28	92.86	NA	100.00	100.00	100.00	88.24	92.86	94.12	88.89	93.62	91.43	90.16	NA	100.00	100.00	88.68	100.00	95.06	-4.94	0.023053	0.404376
K	intron_retention	RAD23A	chr19	+	chr19:13059974-13060091				chr19:13059973-13059974;chr19:13060091-13060092		11.90	6.76	11.48	5.00	10.00	7.14	0.00	0.00	0.00	0.00	1.79	0.00	1.30	0.00	0.00	2.44	2.78	0.00	2.86	5.66	5.00	9.76	7.87	16.13	0.00	3.33	4.55	3.85	7.02	5.00	5.41	10.17	9.62	7.02	7.81	8.93	2.08	4.37	2.29	0.926648	1.000000
N	alternative_donor	VPS9D1	chr16	-	chr16:89775365-89775634	chr16:89775365-89775626		chr16:89775627-89775634	chr16:89775634-89775635		4.41	0.00	5.71	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	2.33	0.00	NA	0.00	0.00	0.00	2.50	2.82	0.00	0.00	4.17	0.00	1.37	0.00	NA	0.00	3.64	0.00	1.17	1.17	0.095403	0.490785
N	alternative_acceptor		chr19	+	chr19:35524644-35528066;chr19:35524644-35525948;chr19:35524644-35530101	chr19:35524644-35530020		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		92.59	94.12	82.99	92.00	100.00	87.50	100.00	87.50	97.22	100.00	100.00	81.82	100.00	91.67	94.03	93.33	92.59	91.67	100.00	86.36	91.18	77.78	93.33	65.85	100.00	83.33	88.51	89.29	94.44	82.69	86.84	90.14	100.00	83.33	91.67	71.05	100.00	87.17	-12.83	0.000140	0.177408
K	intron_retention	C1orf174	chr1	-	chr1:3806638-3807132				chr1:3806637-3806638;chr1:3807132-3807133		4.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	15.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.492555	1.000000
K	intron_retention	LRP1	chr12	+	chr12:57597305-57598192				chr12:57597304-57597305;chr12:57598192-57598193		0.95	0.93	2.83	NA	0.00	NA	0.22	0.00	0.00	0.00	0.00	0.00	0.35	0.00	0.00	0.00	0.00	0.00	11.11	2.56	0.00	0.00	0.99	0.00	5.32	0.00	3.42	0.00	0.68	0.00	4.35	3.23	4.76	0.00	1.54	0.00	2.84	0.47	-2.37	0.565223	1.000000
N	alternative_acceptor	CD83,FGD2	chr6	+	chr6:36990147-36992992;chr6:36990147-36992548;chr6:36990147-36990971;chr6:36990147-36993567	chr6:36990147-36990964		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		1.42	2.94	NA	NA	0.00	NA	0.00	2.15	0.00	0.00	0.00	3.57	1.54	2.19	1.72	4.17	0.00	1.75	10.00	1.98	NA	NA	3.57	2.27	7.14	2.08	NA	3.12	0.00	1.59	1.35	0.00	4.00	10.53	5.00	5.43	3.47	2.03	-1.44	0.172758	0.660713
N	cassette	RABGGTA	chr14	-	chr14:24737405-24738032	chr14:24737405-24737574;chr14:24737627-24738032		chr14:24737575-24737626			NA	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	NA	NA	93.33	100.00	NA	NA	NA	NA	100.00	100.00	0.00	0.391002	0.709410
K	cassette	MTMR14	chr3	+	chr3:9731828-9743473;chr3:9730767-9743473	chr3:9731828-9739394,chr3:9730767-9739394;chr3:9739551-9743473		chr3:9739395-9739550			41.82	42.96	41.43	50.88	44.55	50.00	59.74	54.00	53.49	66.67	56.72	75.00	47.30	61.82	44.23	51.25	60.71	70.00	37.11	48.00	47.22	62.22	46.60	53.57	54.29	47.17	43.14	65.91	51.56	53.12	48.33	44.19	37.59	53.52	46.30	56.90	45.13	48.16	3.04	0.448805	0.750082
K	mutually_exclusive	MTMR14	chr3	+	chr3:9730767-9739394,chr3:9739551-9743473	chr3:9730767-9731647,chr3:9731828-9743473	chr3:9739395-9739550	chr3:9731648-9731827			73.33	83.72	72.73	75.00	83.87	NA	90.00	83.33	81.25	72.73	88.24	NA	88.00	76.92	78.95	84.62	83.33	NA	84.38	66.67	70.83	53.85	84.38	70.00	70.00	87.50	83.33	53.85	82.35	75.00	70.37	69.23	69.23	68.00	76.47	70.59	84.05	75.12	-8.92	0.376853	0.510003
N	cassette	EHBP1L1	chr11	+	chr11:65348723-65351711;chr11:65348798-65351711;chr11:65348845-65351711	chr11:65348798-65349009,chr11:65348845-65349009,chr11:65348723-65349009;chr11:65349488-65351711		chr11:65349010-65349487			73.76	74.42	82.53	NA	64.29	NA	90.83	94.30	93.75	91.67	91.38	97.62	86.86	90.76	93.41	96.55	91.46	100.00	70.83	66.67	56.41	88.24	68.06	82.61	89.66	79.65	72.86	97.14	84.91	89.66	52.46	62.42	50.00	87.76	85.42	90.77	80.64	76.71	-3.93	0.928119	0.982136
N	alternative_acceptor	RPL15	chr3	+	chr3:23958665-23959437;chr3:23958665-23959327	chr3:23958665-23959340		chr3:23959328-23959340;chr3:23959341-23959437	chr3:23959340-23959341;chr3:23959437-23959438		95.56	100.00	98.68	100.00	98.59	100.00	98.26	97.62	98.89	99.65	99.68	100.00	99.51	100.00	99.05	98.70	99.32	99.49	100.00	97.30	97.56	98.81	99.33	99.15	NA	96.43	98.31	98.59	99.11	98.55	89.13	95.77	97.73	98.70	98.65	99.04	99.51	96.87	-2.64	0.097660	0.598353
N	jcn_only_AA	CD83,FGD2	chr6	+	chr6:36990147-36992992;chr6:36990147-36992548;chr6:36990147-36990971;chr6:36990147-36993567	chr6:36990147-36990964		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		0.00	0.00	NA	NA	0.00	NA	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.71	NA	0.00	0.00	0.00	2.60	0.00	0.00	5.88	0.00	2.48	0.00	0.79	0.79	0.074075	0.663989
K	alternative_first_exon	RABGAP1L	chr1	+	chr1:174927311-174938413;chr1:174926687-174938413	chr1:174934123-174938413	chr1:174927028-174927310;chr1:174926594-174926686	chr1:174933905-174934122			0.00	0.00	NA	0.00	0.00	0.00	33.33	0.83	0.00	NA	18.18	0.00	NA	0.62	0.00	0.00	10.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.389810	0.552368
K	cassette	C8orf59	chr8	-	chr8:86129732-86132534	chr8:86129732-86131464;chr8:86131590-86132534		chr8:86131465-86131589			2.50	1.67	1.72	6.06	6.67	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.66	1.54	6.98	7.27	3.33	0.00	0.00	0.00	0.830210	0.942757
N	alternative_acceptor	SYVN1	chr11	-	chr11:64895961-64896034	chr11:64895976-64896034		chr11:64895961-64895975	chr11:64895960-64895961		8.33	0.00	9.09	9.09	0.00	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	NA	5.88	8.33	0.00	NA	0.00	9.68	0.00	10.53	NA	13.33	9.30	9.09	4.17	12.90	2.78	0.00	3.33	3.33	0.471172	0.774265
K	cassette	FAAP20	chr1	-	chr1:2125350-2126126	chr1:2125350-2125436;chr1:2125573-2126126		chr1:2125437-2125572			89.19	88.03	86.11	86.67	87.93	85.00	94.44	NA	87.50	100.00	82.35	94.74	90.70	85.71	95.00	82.76	90.24	89.47	82.95	88.89	84.29	82.35	82.61	92.31	85.71	90.91	92.16	85.71	87.76	86.67	88.00	81.82	87.06	85.71	90.00	90.00	87.55	88.89	1.34	0.837491	0.945387
N	intron_retention		chr2	-	chr2:219129090-219129237				chr2:219129089-219129090;chr2:219129237-219129238		100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	jcn_only_AA	ATP5B	chr12	-	chr12:57037372-57038954;chr12:57032981-57038954	chr12:57038740-57038954					97.87	84.80	98.73	84.62	92.16	38.89	99.19	99.62	99.22	99.23	99.67	99.55	98.88	99.16	99.42	98.45	99.34	99.19	67.39	98.01	90.10	99.02	98.61	98.63	76.00	99.39	98.41	96.50	95.89	92.48	96.55	97.02	75.93	97.97	98.98	98.08	80.40	98.59	18.19	0.039846	0.663989
K	intron_retention	TUBA1B	chr12	-	chr12:49522569-49522688				chr12:49522568-49522569;chr12:49522688-49522689		85.34	92.97	78.76	100.00	79.17	100.00	92.04	90.53	90.39	95.24	94.13	95.71	90.08	86.90	87.01	90.66	91.43	92.50	91.61	95.08	100.00	87.76	88.20	90.87	93.27	92.32	91.82	91.27	90.02	92.65	92.47	90.32	96.77	88.92	87.86	90.53	92.50	91.42	-1.08	0.662007	1.000000
K	cassette	SRSF2	chr17	-	chr17:74731241-74732235	chr17:74731241-74731853;chr17:74731958-74732235		chr17:74731854-74731957			16.67	7.27	12.16	3.95	4.94	3.23	3.70	4.88	8.82	1.23	2.76	0.83	4.04	9.41	9.23	3.01	2.23	1.09	9.09	14.81	15.38	7.45	9.46	7.46	4.17	17.44	15.79	4.58	8.65	4.65	26.14	22.31	10.26	6.48	6.21	6.67	5.72	15.74	10.02	0.035453	0.472093
N	jcn_only_AA	GADD45G	chr9	+	chr9:92220449-92220560;chr9:92220449-92220581	chr9:92220449-92220672		chr9:92220561-92220581;chr9:92220582-92220672	chr9:92220581-92220582;chr9:92220672-92220673		1.59	0.00	0.00	4.96	6.45	6.90	0.00	0.00	5.22	7.69	3.45	5.50	NA	3.85	2.70	6.67	9.09	6.45	3.57	0.00	3.64	4.00	7.14	5.00	0.00	0.00	0.00	5.43	8.11	7.69	0.00	0.00	0.00	4.11	0.00	4.85	0.00	0.00	0.00	0.845781	0.938257
N	jcn_only_AD		chr5	-	chr5:176951034-176951774;chr5:176951034-176951590	chr5:176951034-176951185		chr5:176951186-176951590;chr5:176951591-176951774	chr5:176951590-176951591;chr5:176951774-176951775		78.57	100.00	84.38	100.00	87.50	86.67	NA	NA	NA	NA	NA	NA	NA	NA	88.89	NA	NA	NA	87.50	86.67	100.00	100.00	90.91	NA	94.52	100.00	95.00	NA	100.00	100.00	88.89	86.67	89.66	100.00	100.00	100.00	92.09	87.78	-4.31	0.438616	0.696909
K	alternative_acceptor	IKBKB,TNKS	chr8	+	chr8:42177165-42178252	chr8:42177165-42177990		chr8:42177991-42178252	chr8:42178252-42178253		4.76	8.70	17.07	NA	13.33	NA	4.26	0.00	0.00	3.57	2.04	0.00	6.67	0.00	7.32	3.57	3.77	0.00	5.00	8.57	6.67	6.67	8.33	13.64	0.00	21.43	17.24	10.00	10.71	11.11	6.67	7.69	4.76	5.88	9.09	9.68	4.88	5.71	0.83	0.580293	0.840046
N	cassette	LTBR	chr12	+	chr12:6497672-6499825;chr12:6495611-6499825;chr12:6497992-6499825	chr12:6495611-6499277,chr12:6497992-6499277,chr12:6497672-6499277;chr12:6499507-6499825		chr12:6499278-6499506			100.00	100.00	99.27	100.00	98.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.21	100.00	96.74	100.00	95.83	100.00	99.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	97.40	100.00	100.00	0.00	0.178340	0.709176
K	jcn_only_AA	SCYL1,ZC3H12C	chr11	+	chr11:65305796-65305917	chr11:65305796-65305912		chr11:65305913-65305917	chr11:65305917-65305918		98.21	97.71	95.65	98.57	95.16	96.69	95.12	96.88	94.23	100.00	97.56	100.00	96.97	97.30	100.00	96.30	100.00	95.24	96.64	98.00	95.56	96.97	95.83	100.00	96.09	97.37	96.43	93.55	93.55	98.08	95.24	97.26	96.45	97.14	97.37	98.15	96.55	97.34	0.79	0.260353	0.663989
K	intron_retention	MAF1	chr8	+	chr8:145160670-145160771				chr8:145160669-145160670;chr8:145160771-145160772		3.45	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.89	4.65	8.00	0.00	0.00	0.00	0.00	1.47	1.47	0.990210	1.000000
N	alternative_acceptor	ANKFY1	chr17	-	chr17:4070488-4072491;chr17:4071206-4072491	chr17:4067468-4072491		chr17:4067468-4070487;chr17:4070488-4071205	chr17:4067467-4067468;chr17:4070487-4070488		4.94	0.00	0.00	NA	0.00	0.00	1.59	3.19	4.65	0.00	5.77	0.00	0.00	2.53	0.00	7.69	3.77	4.65	0.00	1.59	19.05	0.00	2.56	2.56	0.00	3.90	0.00	6.25	0.00	5.26	2.50	0.00	10.00	2.78	2.78	5.06	0.00	2.86	2.86	0.516303	0.803032
N	jcn_only_AD	MRPL18	chr6	+	chr6:160212143-160218318	chr6:160212159-160218318		chr6:160212143-160212158	chr6:160212142-160212143		100.00	100.00	100.00	100.00	100.00	NA	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr16	-	chr16:67692983-67693131				chr16:67692982-67692983;chr16:67693131-67693132		21.05	27.78	18.18	NA	18.18	NA	0.00	0.00	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	16.67	20.00	0.00	NA	11.11	NA	NA	NA	15.38	NA	NA	NA	20.00	12.00	0.00	NA	0.00	26.67	0.00	20.00	20.00	0.679972	1.000000
K	coord_cassette	FKBP8	chr19	-	chr19:18648584-18652488	chr19:18648584-18649025;chr19:18649244-18650180;chr19:18650270-18652488		chr19:18649026-18649243;chr19:18650181-18650269			97.58	94.48	96.58	100.00	99.13	100.00	100.00	100.00	100.00	100.00	99.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.10	97.98	97.52	97.37	98.31	100.00	100.00	99.01	97.97	100.00	98.23	100.00	96.94	96.70	98.43	100.00	98.61	94.62	99.22	98.50	-0.72	0.936982	0.972993
K	cassette	ARFRP1	chr20	-	chr20:62332055-62333487	chr20:62332055-62333181;chr20:62333253-62333487		chr20:62333182-62333252			91.43	100.00	90.00	91.67	91.30	90.38	100.00	100.00	97.67	95.83	100.00	100.00	100.00	100.00	96.67	97.22	100.00	100.00	100.00	93.55	100.00	92.31	96.15	94.29	100.00	100.00	97.37	100.00	95.45	96.92	91.30	97.50	87.50	100.00	100.00	94.44	100.00	96.78	-3.22	0.512533	0.791208
N	alternative_donor	DPP7	chr9	-	chr9:140006207-140006324;chr9:140006207-140006327	chr9:140006207-140006392		chr9:140006325-140006327;chr9:140006328-140006392	chr9:140006327-140006328;chr9:140006392-140006393		6.90	4.49	7.02	4.62	7.38	6.13	4.27	10.00	9.52	14.17	10.27	8.60	2.78	6.67	0.00	3.70	8.20	0.00	3.90	2.44	6.07	5.81	8.67	3.51	0.55	2.00	0.00	5.13	3.57	3.70	4.88	3.28	5.33	5.88	4.51	5.22	4.08	5.78	1.69	0.210031	0.581601
N	alternative_donor	TBC1D2,TSC1	chr9	-	chr9:100973126-100975389	chr9:100973126-100973388		chr9:100973389-100975389	chr9:100975389-100975390		2.27	NA	2.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	0.00	NA	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.545493	0.780071
K	intron_retention	PLXNB2	chr22	-	chr22:50722180-50722261				chr22:50722179-50722180;chr22:50722261-50722262		4.35	3.17	2.63	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.45	0.00	0.00	2.56	0.00	6.90	0.00	2.83	0.00	0.00	NA	0.00	5.65	17.65	1.82	3.45	1.75	1.58	0.00	-1.58	0.529429	1.000000
K	jcn_only_AD	GABPB1,SCAMP2	chr15	-	chr15:75146991-75165539	chr15:75146991-75165264		chr15:75165265-75165539	chr15:75165539-75165540		0.00	6.35	3.70	0.00	2.38	NA	2.26	1.05	0.00	0.85	0.68	0.98	1.38	0.88	0.00	0.00	0.79	0.00	7.69	2.99	0.00	0.00	2.48	0.00	6.25	0.00	1.54	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.25	0.44	-3.81	0.058774	0.544966
N	jcn_only_AD	FBXW5	chr9	-	chr9:139836137-139837800;chr9:139836137-139836206;chr9:139836137-139836551	chr9:139836137-139836497					90.20	100.00	86.75	81.48	92.31	100.00	91.00	90.00	89.36	91.30	92.37	94.55	90.91	84.42	89.62	92.50	95.24	93.62	94.44	81.82	90.80	90.91	92.68	88.46	94.74	93.65	89.39	90.24	88.68	92.68	82.09	89.36	88.24	91.67	84.09	90.62	92.72	87.21	-5.51	0.040448	0.474054
K	alternative_acceptor	RABGGTA	chr14	-	chr14:24734962-24735635	chr14:24734970-24735635		chr14:24734962-24734969	chr14:24734961-24734962		100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	94.12	100.00	100.00	83.33	NA	100.00	100.00	96.55	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	FGR	chr1	-	chr1:27939862-27941360	chr1:27939862-27940940;chr1:27941095-27941360		chr1:27940941-27941094			100.00	100.00	100.00	91.89	91.49	100.00	97.93	100.00	100.00	97.89	96.00	97.62	100.00	98.57	100.00	96.57	100.00	98.17	NA	100.00	95.92	93.90	95.77	93.88	NA	100.00	100.00	97.18	100.00	97.64	100.00	100.00	100.00	95.65	95.76	97.42	100.00	100.00	0.00	0.648145	0.870529
N	jcn_only_AA		chr9	+	chr9:127110102-127138048;chr9:127110102-127111606	chr9:127110102-127113115		chr9:127111607-127113115;chr9:127113116-127138048	chr9:127113115-127113116;chr9:127138048-127138049		100.00	100.00	100.00	100.00	100.00	100.00	99.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	99.24	100.00	100.00	100.00	0.00	0.317032	0.663989
N	alternative_acceptor	ITGB1BP1	chr2	-	chr2:9547714-9548241;chr2:9547035-9548241	chr2:9547728-9548241		chr2:9547035-9547713;chr2:9547714-9547727	chr2:9547034-9547035;chr2:9547713-9547714		75.00	61.29	NA	57.69	72.41	40.00	42.00	60.00	NA	46.81	47.37	40.54	68.42	NA	NA	55.17	64.00	53.85	68.00	66.67	41.30	66.67	63.64	58.82	43.75	60.00	NA	70.59	68.00	65.00	66.67	80.00	48.78	64.29	75.00	53.33	55.03	66.67	11.64	0.106434	0.598353
N	alternative_acceptor	PARP14	chr3	+	chr3:48481869-48481954;chr3:48481869-48481959	chr3:48481869-48481950		chr3:48481951-48481954;chr3:48481955-48481959	chr3:48481954-48481955;chr3:48481959-48481960		93.39	93.12	96.23	93.97	93.42	92.95	93.68	94.32	94.79	95.77	94.62	96.43	94.27	95.77	93.81	95.45	94.35	95.00	93.44	95.04	93.01	94.78	95.28	95.96	93.91	94.52	95.24	95.58	95.05	95.39	96.03	94.58	94.54	90.68	94.90	95.24	93.80	94.78	0.98	0.056523	0.570243
N	alternative_acceptor	PITPNM1	chr11	-	chr11:67261024-67261158	chr11:67261065-67261158		chr11:67261024-67261064	chr11:67261023-67261024		92.86	100.00	84.44	NA	95.24	NA	100.00	90.91	100.00	NA	100.00	NA	100.00	92.86	100.00	NA	81.25	NA	84.62	90.91	96.30	NA	94.44	NA	100.00	90.48	96.88	NA	95.00	NA	95.24	92.86	89.47	100.00	92.86	NA	100.00	91.88	-8.12	0.278406	0.709013
K	jcn_only_AA	NELFE	chr6	-	chr6:31922580-31922835;chr6:31922655-31922835	chr6:31922670-31922835		chr6:31922580-31922654;chr6:31922655-31922669	chr6:31922579-31922580;chr6:31922654-31922655		82.86	82.81	86.49	79.31	89.39	80.65	91.49	70.00	66.67	90.00	81.25	82.61	81.25	81.82	80.65	81.67	80.77	75.00	88.24	86.67	82.81	70.00	86.89	86.49	86.67	83.78	86.96	87.18	85.19	90.32	80.00	85.71	90.91	88.10	86.00	81.63	87.45	82.34	-5.11	0.067077	0.663989
K	alternative_donor	C15orf39	chr15	+	chr15:75501166-75503089	chr15:75501218-75503089		chr15:75501166-75501217	chr15:75501165-75501166		24.00	47.06	21.43	NA	40.00	NA	50.00	37.50	27.27	NA	60.00	NA	35.29	23.53	33.33	NA	47.06	NA	21.43	36.36	NA	NA	37.50	NA	75.00	16.67	NA	50.00	37.50	NA	23.53	30.77	33.33	NA	NA	NA	41.17	23.77	-17.41	0.082419	0.474542
K	jcn_only_AD	PSMB7	chr9	-	chr9:127177215-127177409;chr9:127177215-127177391	chr9:127177215-127177642		chr9:127177392-127177409;chr9:127177410-127177642	chr9:127177409-127177410;chr9:127177642-127177643		98.97	100.00	97.47	100.00	97.87	100.00	100.00	100.00	97.89	98.72	100.00	100.00	100.00	98.06	99.40	99.00	100.00	100.00	100.00	94.62	100.00	98.59	100.00	100.00	100.00	96.06	98.67	98.33	100.00	100.00	94.52	98.73	100.00	95.60	100.00	97.75	100.00	97.06	-2.94	0.025675	0.367259
K	jcn_only_AD	SF1	chr11	-	chr11:64534724-64535042	chr11:64534724-64535038		chr11:64535039-64535042	chr11:64535042-64535043		16.67	13.51	14.14	5.00	10.00	9.09	8.70	7.55	8.11	9.01	14.29	14.63	6.49	4.55	9.82	12.40	10.84	12.90	18.18	8.11	2.86	15.56	9.46	15.79	NA	10.26	13.33	9.09	9.68	12.82	17.86	11.86	18.75	12.50	12.73	8.70	13.51	9.18	-4.33	0.503259	0.742275
N	jcn_only_AA	SMG9	chr19	-	chr19:44235264-44237009;chr19:44233202-44237009;chr19:44235494-44237009;chr19:44233199-44237009	chr19:44235827-44237009		chr19:44233199-44233201;chr19:44233202-44235263;chr19:44235264-44235493;chr19:44235494-44235826	chr19:44233198-44233199;chr19:44233201-44233202;chr19:44235263-44235264;chr19:44235493-44235494		100.00	97.87	100.00	94.29	100.00	95.78	100.00	100.00	96.67	100.00	100.00	93.02	100.00	100.00	94.74	96.30	100.00	95.65	98.77	96.77	100.00	94.44	96.36	97.83	100.00	100.00	100.00	98.28	98.61	95.70	100.00	96.88	96.92	96.77	100.00	100.00	99.38	100.00	0.62	0.497409	0.752872
K	intron_retention	TMEM165	chr4	+	chr4:56290811-56291542				chr4:56290810-56290811;chr4:56291542-56291543		3.76	0.00	2.48	1.82	0.00	0.00	0.00	0.63	0.00	0.00	0.00	0.00	0.77	0.00	0.45	0.00	0.00	0.00	1.61	0.88	1.27	1.79	2.56	2.30	0.00	1.82	2.15	1.15	1.04	1.23	1.96	2.44	0.00	3.52	3.95	5.41	0.00	1.35	1.35	0.321665	1.000000
N	jcn_only_AD	PRICKLE4,TOMM6	chr6	+	chr6:41757071-41757305	chr6:41757075-41757305		chr6:41757071-41757074	chr6:41757070-41757071		92.86	100.00	100.00	95.69	96.89	97.62	95.03	97.14	95.51	98.15	97.61	97.94	100.00	100.00	98.29	98.45	97.12	97.67	96.67	92.16	97.98	97.35	97.63	96.08	100.00	100.00	97.47	98.40	99.06	97.78	96.61	100.00	98.79	98.39	97.04	100.00	99.40	96.88	-2.52	0.262098	0.657607
N	alternative_acceptor	CDK5RAP3	chr17	+	chr17:46055277-46056200;chr17:46055277-46055869	chr17:46055277-46056194		chr17:46055870-46056194;chr17:46056195-46056200	chr17:46056194-46056195;chr17:46056200-46056201		100.00	99.26	96.67	100.00	97.37	100.00	95.24	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.29	98.36	100.00	92.96	100.00	100.00	96.30	98.11	100.00	100.00	100.00	97.30	98.33	98.84	100.00	100.00	100.00	99.63	96.80	-2.83	0.227314	0.681134
K	coord_cassette	OAZ1	chr19	+	chr19:2269744-2271780	chr19:2269744-2271389;chr19:2271442-2271442;chr19:2271530-2271780		chr19:2271390-2271441;chr19:2271443-2271529			95.03	96.49	94.66	96.93	96.93	95.79	99.84	99.78	99.23	99.39	98.94	99.39	99.53	99.02	98.80	98.78	98.68	99.75	96.71	95.82	97.26	98.69	96.03	98.93	94.53	97.44	95.86	99.41	97.87	99.33	95.95	95.95	95.28	97.44	97.20	98.50	96.60	96.69	0.09	0.927836	0.972993
K	intron_retention	IMPDH1	chr7	-	chr7:128033083-128034331				chr7:128033082-128033083;chr7:128034331-128034332		4.88	3.57	5.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	NA	1.25	0.00	1.15	0.00	2.67	0.00	0.00	2.78	2.73	0.00	0.00	0.00	0.00	2.70	1.23	0.00	0.00	0.00	1.24	0.00	-1.24	0.561615	1.000000
K	intron_retention	BCL2L2-PABPN1,PABPN1	chr14	+	chr14:23793499-23794455				chr14:23793498-23793499;chr14:23794455-23794456		15.25	13.51	29.73	9.33	10.00	7.48	2.82	1.92	2.78	2.86	4.63	2.22	6.17	3.45	7.04	5.97	5.88	4.55	9.42	22.73	7.14	28.57	17.54	30.56	17.44	23.33	26.87	16.67	15.38	16.36	35.00	27.12	15.45	19.40	21.74	37.93	11.46	18.99	7.53	0.549392	1.000000
N	alternative_acceptor	GLMP	chr1	-	chr1:156263145-156263808;chr1:156263221-156263808;chr1:156263502-156263808	chr1:156263368-156263808		chr1:156263145-156263220;chr1:156263221-156263367;chr1:156263368-156263501	chr1:156263144-156263145;chr1:156263220-156263221;chr1:156263367-156263368		89.17	91.85	90.41	87.88	92.44	78.26	91.63	93.20	93.15	87.12	86.64	86.96	90.77	91.46	90.91	89.47	89.60	89.17	92.19	93.59	89.33	89.83	90.12	93.24	94.94	91.53	89.77	92.94	89.15	91.38	89.89	92.86	91.78	88.07	88.79	90.73	91.81	91.50	-0.32	0.453232	0.758587
N	alternative_acceptor	DDX41	chr5	-	chr5:176939395-176939496	chr5:176939418-176939496		chr5:176939395-176939417	chr5:176939394-176939395		1.52	2.68	0.00	2.63	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	1.85	3.12	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.37	2.90	0.00	0.00	1.61	0.82	0.76	-0.06	0.848859	0.946545
N	jcn_only_AA	OGFR	chr20	+	chr20:61436383-61438888;chr20:61436383-61438033	chr20:61436383-61438893		chr20:61438034-61438888;chr20:61438889-61438893	chr20:61438888-61438889;chr20:61438893-61438894		3.18	0.00	0.00	0.00	0.00	0.00	0.00	0.84	1.71	3.20	1.54	2.58	4.00	3.62	3.79	3.16	2.25	1.51	8.70	3.05	0.00	3.70	1.64	2.48	8.00	4.33	0.00	1.68	0.00	2.25	2.45	2.33	0.00	1.79	0.00	1.51	2.00	3.12	1.12	0.768454	0.896803
N	alternative_acceptor	INPPL1	chr11	+	chr11:71939543-71939770	chr11:71939543-71939690		chr11:71939691-71939770	chr11:71939770-71939771		6.45	6.25	8.16	NA	NA	NA	3.57	2.22	2.00	0.00	1.56	0.00	1.49	0.00	0.00	0.00	2.02	NA	NA	9.52	NA	0.00	8.70	7.69	10.34	3.23	3.57	NA	7.69	NA	NA	3.03	NA	6.67	7.41	4.55	4.91	3.23	-1.68	0.670942	0.880186
K	cassette	NENF	chr1	+	chr1:212606463-212617680	chr1:212606463-212615906;chr1:212615968-212617680		chr1:212615907-212615967			92.04	96.22	94.92	96.95	92.17	98.08	96.46	98.61	95.83	97.26	97.20	96.30	98.06	98.31	100.00	97.80	96.55	97.30	93.96	90.43	94.84	93.48	92.27	92.75	93.16	94.34	88.61	91.67	95.77	96.30	95.05	90.82	95.12	94.87	95.20	94.57	95.67	94.69	-0.98	0.658947	0.874582
K	jcn_only_AA	MS4A14,MS4A7	chr11	+	chr11:60146138-60170384;chr11:60146138-60150601	chr11:60146138-60150652					6.59	20.45	7.53	NA	13.95	NA	6.42	5.94	10.00	7.94	8.42	6.17	7.91	5.69	0.00	8.05	6.99	7.37	6.25	4.23	0.00	13.73	8.00	5.75	NA	6.44	8.33	9.30	12.09	9.09	5.94	5.48	0.00	10.09	9.16	8.64	6.42	5.94	-0.48	0.514404	0.760908
K	intron_retention	SMARCD2	chr17	-	chr17:61910531-61910657				chr17:61910530-61910531;chr17:61910657-61910658		1.64	0.00	2.47	0.00	2.22	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	4.00	0.00	0.00	0.00	2.53	4.17	0.00	0.00	2.44	5.33	2.70	0.00	0.00	2.17	0.00	0.82	0.82	0.675119	1.000000
N	jcn_only_AA	AP5Z1	chr7	+	chr7:4829561-4830019;chr7:4829561-4829844	chr7:4829561-4830089		chr7:4829845-4830019;chr7:4830020-4830089	chr7:4830019-4830020;chr7:4830089-4830090		91.18	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	NA	95.24	96.88	100.00	96.00	100.00	92.00	100.00	94.44	100.00	95.83	100.00	95.12	100.00	89.74	96.88	96.97	94.44	93.02	100.00	98.44	-1.56	0.380427	0.663989
N	alternative_acceptor	RNPEPL1	chr2	+	chr2:241515028-241515984;chr2:241515028-241516016	chr2:241515028-241515951		chr2:241515952-241515984;chr2:241515985-241516016	chr2:241515984-241515985;chr2:241516016-241516017		90.91	89.80	82.35	NA	92.31	NA	92.00	88.24	93.75	91.67	88.89	NA	86.89	90.00	100.00	92.31	83.72	NA	92.31	100.00	92.86	NA	80.95	NA	93.33	87.50	100.00	NA	91.43	NA	78.57	100.00	90.48	93.75	93.33	88.24	91.24	89.12	-2.12	0.608782	0.850613
K	intron_retention	GMIP	chr19	-	chr19:19753429-19754319				chr19:19753428-19753429;chr19:19754319-19754320		3.23	0.00	2.08	NA	NA	NA	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	6.67	0.00	6.67	0.00	0.00	NA	0.00	0.00	NA	5.00	3.70	5.88	0.00	0.00	0.00	0.629979	1.000000
K	intron_retention	HLA-A	chr6	+	chr6:29912394-29912839				chr6:29912393-29912394;chr6:29912839-29912840		79.26	77.30	75.77	76.54	71.86	71.20	7.46	14.41	18.18	19.64	10.20	17.57	6.25	19.64	21.43	17.86	NA	23.81	8.00	19.05	40.00	12.50	8.16	17.24	NA	NA	NA	NA	NA	NA	64.29	65.22	NA	NA	NA	75.00	7.73	19.64	11.91	0.744944	1.000000
K	intron_retention	RAB34	chr17	-	chr17:27041919-27042049				chr17:27041918-27041919;chr17:27042049-27042050		3.06	0.00	2.35	0.00	4.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	1.49	2.30	5.88	0.00	6.67	0.00	0.00	2.78	0.00	1.56	0.00	1.49	3.33	1.41	0.00	2.22	3.57	0.00	0.74	0.74	0.945078	1.000000
K	intron_retention		chr19	+	chr19:14580330-14580563				chr19:14580329-14580330;chr19:14580563-14580564		0.59	0.00	2.01	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	1.30	0.56	0.00	1.57	0.00	1.62	0.00	2.69	5.00	2.75	1.61	1.85	2.73	1.33	2.22	1.37	1.35	0.67	0.29	-0.37	0.554966	1.000000
K	jcn_only_AA	PSENEN	chr19	+	chr19:36236602-36236773	chr19:36236602-36236735		chr19:36236736-36236773	chr19:36236773-36236774		87.27	89.13	93.62	95.24	94.23	100.00	85.37	86.49	88.89	86.05	86.84	80.95	86.67	96.30	92.31	89.13	78.05	90.91	93.55	92.98	89.39	96.97	91.80	85.29	90.91	92.73	90.38	91.89	98.73	85.96	91.07	92.98	91.89	90.57	86.67	87.23	90.02	91.90	1.88	0.452897	0.715134
N	alternative_acceptor	SARAF	chr8	-	chr8:29924427-29927157;chr8:29924435-29927157	chr8:29921414-29927157		chr8:29921414-29924426;chr8:29924427-29924434	chr8:29921413-29921414;chr8:29924426-29924427		14.52	0.00	10.96	NA	27.03	NA	18.57	12.20	0.00	23.40	15.49	24.00	18.18	0.00	12.50	16.00	7.69	10.71	42.31	32.50	48.15	0.00	23.33	25.00	0.00	20.45	22.86	18.75	0.00	0.00	34.29	28.77	44.44	21.74	22.22	0.00	18.38	17.48	-0.89	0.871747	0.956197
K	cassette	CASP1	chr11	-	chr11:104902008-104904934	chr11:104902008-104903790;chr11:104903854-104904934		chr11:104903791-104903853			86.81	100.00	90.35	80.00	82.14	100.00	88.71	89.76	91.03	83.16	88.06	88.30	85.19	90.28	91.38	76.80	92.98	85.51	NA	90.91	81.48	85.00	83.87	81.82	NA	94.62	92.50	84.82	90.32	87.90	89.47	91.67	80.00	83.33	94.59	86.90	86.95	90.02	3.07	0.699739	0.890107
K	intron_retention	PDLIM7	chr5	-	chr5:176917595-176917870				chr5:176917594-176917595;chr5:176917870-176917871		17.39	0.00	36.84	9.09	27.27	0.00	0.00	0.00	NA	NA	10.00	NA	NA	0.00	NA	NA	12.50	NA	0.00	12.00	5.71	NA	35.00	NA	0.00	20.51	29.41	NA	30.77	NA	9.76	25.00	0.00	31.25	31.82	13.33	0.00	10.88	10.88	0.080326	1.000000
N	alternative_acceptor	NELFB	chr9	+	chr9:140161799-140166532	chr9:140161799-140166335		chr9:140166336-140166532	chr9:140166532-140166533		0.00	0.00	5.26	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	3.64	0.00	7.02	0.00	2.04	0.00	4.44	0.00	0.00	2.70	3.12	3.70	2.63	4.17	0.71	0.00	-0.71	0.150510	0.653349
K	coord_cassette	THEMIS2	chr1	+	chr1:28203240-28211805	chr1:28203240-28208481;chr1:28208589-28209023;chr1:28209555-28211805		chr1:28208482-28208588;chr1:28209024-28209554			34.98	11.29	34.65	NA	30.00	NA	68.85	85.47	68.02	79.41	77.63	85.51	76.92	89.61	85.32	82.05	90.20	87.50	18.75	32.18	16.67	NA	27.59	82.14	NA	33.33	15.50	63.33	59.32	70.59	41.67	26.62	4.00	46.15	35.29	70.91	18.75	38.33	19.58	0.397917	0.653720
N	alternative_donor		chr2	-	chr2:225630555-225630816;chr2:225630555-225633588	chr2:225630555-225634927		chr2:225630817-225633588;chr2:225633589-225634927	chr2:225633588-225633589;chr2:225634927-225634928		90.85	97.70	84.38	100.00	97.78	100.00	98.73	98.53	100.00	100.00	97.90	100.00	97.22	98.46	100.00	100.00	96.69	100.00	100.00	95.00	100.00	94.12	89.52	91.67	100.00	95.49	92.11	93.10	95.40	100.00	95.74	93.48	100.00	89.47	89.60	95.08	99.37	95.61	-3.75	0.036269	0.352241
N	alternative_first_exon	LINC00493	chr20	+	chr20:18541413-18549882,chr20:18542898-18549882;chr20:18535818-18549882	chr20:18548241-18549882	chr20:18535752-18535817	chr20:18547991-18548240			100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.544826
N	jcn_only_AD	COL23A1	chr5	-	chr5:177666181-177669042	chr5:177666181-177667461		chr5:177667462-177669042	chr5:177669042-177669043		11.76	2.63	NA	NA	9.09	NA	0.00	NA	NA	6.67	0.00	0.00	5.00	NA	NA	3.70	4.26	5.88	15.79	10.00	NA	4.55	5.80	0.00	11.11	0.00	NA	0.00	6.25	7.69	9.52	7.69	3.70	16.00	2.78	7.50	4.35	9.76	5.41	0.698098	0.845069
N	jcn_only_AD		chr11	-	chr11:1501717-1502000;chr11:1501717-1502007	chr11:1501717-1501954		chr11:1501955-1502000;chr11:1502001-1502007	chr11:1502000-1502001;chr11:1502007-1502008		96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	alternative_acceptor	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500588;chr10:35495980-35500181;chr10:35495980-35498239	chr10:35495980-35500583		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		22.64	20.37	18.69	26.87	18.37	35.14	11.11	18.87	22.67	17.65	15.87	24.29	14.67	18.22	25.00	16.00	18.18	23.64	26.09	23.48	26.67	12.90	7.69	22.50	25.81	25.22	23.08	16.30	13.33	27.85	14.72	14.57	17.14	12.31	16.05	14.81	18.76	20.76	2.00	0.663264	0.878218
N	alternative_acceptor	USF2	chr19	+	chr19:35760907-35761349	chr19:35760907-35761195		chr19:35761196-35761349	chr19:35761349-35761350		3.75	5.15	4.05	6.06	1.89	0.00	0.00	0.00	0.00	0.00	0.56	0.00	1.46	0.00	0.00	0.00	0.00	0.00	5.56	4.23	1.56	3.23	0.84	0.00	7.69	0.00	4.23	0.00	0.70	0.00	4.08	6.67	1.32	2.35	3.20	4.24	3.31	1.88	-1.43	0.345418	0.709013
K	intron_retention	TYMP	chr22	-	chr22:50968184-50968332				chr22:50968183-50968184;chr22:50968332-50968333		98.12	100.00	98.55	96.88	100.00	90.00	97.87	92.86	94.19	96.00	93.33	90.38	95.45	95.06	94.59	96.15	95.59	96.18	100.00	98.39	100.00	96.61	96.67	96.63	100.00	97.95	97.65	97.18	100.00	98.54	97.44	98.01	100.00	100.00	95.35	97.67	100.00	97.69	-2.31	0.180817	1.000000
K	cassette	EIF2A	chr3	+	chr3:150293550-150300986	chr3:150293550-150299404;chr3:150299534-150300986		chr3:150299405-150299533			91.30	100.00	96.97	100.00	93.85	96.97	97.06	100.00	100.00	97.92	96.63	93.88	97.01	100.00	93.48	96.43	96.91	93.75	100.00	96.67	96.00	94.44	100.00	96.15	100.00	100.00	100.00	96.72	98.39	95.24	100.00	100.00	96.08	98.48	96.83	98.11	98.53	100.00	1.47	0.829279	0.942757
N	jcn_only_AA	ZSWIM8	chr10	+	chr10:75557364-75557538;chr10:75557364-75557693	chr10:75557364-75557587		chr10:75557539-75557587;chr10:75557588-75557693	chr10:75557587-75557588;chr10:75557693-75557694		3.33	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	5.56	4.17	0.00	0.00	0.00	0.363217	0.663989
N	cassette	MRPS5	chr2	-	chr2:95753327-95766218	chr2:95753327-95756130;chr2:95756268-95766218		chr2:95756131-95756267			100.00	100.00	100.00	92.31	100.00	93.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.95	100.00	94.44	96.55	96.83	100.00	100.00	NA	91.67	100.00	96.55	100.00	100.00	89.29	95.45	100.00	96.00	97.62	100.00	100.00	0.00	0.175411	0.709176
N	jcn_only_AA	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401382-80402322;chr17:80401503-80402322	chr17:80401699-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		5.62	2.50	2.56	0.00	4.29	0.00	2.97	2.48	3.30	4.35	5.97	0.00	4.46	3.11	2.45	0.00	1.41	0.00	0.00	2.42	5.00	0.00	5.13	0.00	0.00	3.57	3.45	2.22	3.45	2.53	2.38	2.60	4.08	0.00	1.92	0.00	2.74	2.79	0.06	0.351979	0.663989
N	jcn_only_AD		chr19	-	chr19:58858396-58858792	chr19:58858396-58858718		chr19:58858719-58858792	chr19:58858792-58858793		100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	96.85	92.86	100.00	100.00	97.01	100.00	99.52	100.00	100.00	100.00	100.00	94.12	100.00	100.00	98.50	100.00	100.00	100.00	99.76	100.00	0.24	0.721294	0.856318
N	alternative_acceptor	MOV10,UBAP2L	chr1	+	chr1:113241412-113242129;chr1:113241412-113242306	chr1:113241412-113242079		chr1:113242080-113242129;chr1:113242130-113242306	chr1:113242129-113242130;chr1:113242306-113242307		9.80	3.45	13.46	NA	4.17	9.68	0.00	5.47	5.13	NA	0.00	11.11	0.00	3.28	7.62	6.25	6.25	18.18	0.00	8.91	9.09	10.00	0.00	19.40	9.52	14.42	8.16	18.75	4.76	17.05	9.84	8.55	0.00	18.52	5.00	20.28	0.00	9.36	9.36	0.016033	0.506009
N	alternative_acceptor		chr11	+	chr11:819906-821740	chr11:819906-821627		chr11:821628-821740	chr11:821740-821741		95.83	100.00	97.89	NA	100.00	NA	93.10	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	NA	100.00	NA	100.00	96.34	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.743383	0.903518
K	intron_retention	TYK2	chr19	-	chr19:10461645-10461727				chr19:10461644-10461645;chr19:10461727-10461728		7.29	5.85	10.67	11.11	10.48	7.69	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	3.64	0.00	3.12	0.00	9.38	8.70	8.81	8.70	13.40	9.09	11.86	8.82	8.80	0.00	5.48	10.64	10.00	9.79	11.26	5.77	5.71	8.00	7.62	7.99	0.38	0.937517	1.000000
N	jcn_only_AA	TRPM2	chr21	+	chr21:45821781-45825024	chr21:45821781-45825021		chr21:45825022-45825024	chr21:45825024-45825025		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	13.64	NA	7.14	0.00	0.00	0.00	10.00	0.00	0.00	NA	NA	NA	6.25	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.184489	0.663989
N	alternative_donor	ATG4B	chr2	+	chr2:242610967-242611605;chr2:242610821-242611605;chr2:242610841-242611605	chr2:242610857-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		5.66	3.60	5.08	4.35	4.81	1.89	2.56	0.00	3.70	4.55	0.00	0.00	4.00	5.26	4.00	0.00	3.45	NA	0.93	0.00	3.80	5.26	3.12	12.50	1.94	12.50	5.97	10.00	5.08	7.41	4.84	1.56	0.87	2.78	8.33	11.48	2.25	5.05	2.80	0.268740	0.644832
N	jcn_only_AA	HNRNPUL1	chr19	+	chr19:41810167-41811736;chr19:41810167-41811532;chr19:41810167-41811550	chr19:41810167-41811580		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		79.37	61.29	82.22	NA	64.86	NA	88.99	70.64	82.69	80.18	79.04	78.69	83.12	86.15	85.71	80.25	82.86	91.38	71.43	94.92	69.57	90.32	90.00	85.71	NA	77.61	93.83	91.18	82.05	84.00	75.81	80.85	64.29	83.72	86.15	85.53	71.43	78.49	7.06	0.313448	0.663989
N	cassette	KIFC3	chr16	-	chr16:57793066-57794637	chr16:57793066-57794193;chr16:57794329-57794637		chr16:57794194-57794328			98.39	100.00	98.63	94.44	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	97.92	98.67	100.00	96.97	NA	100.00	100.00	NA	93.33	100.00	100.00	100.00	100.00	0.00	0.178989	0.709176
K	jcn_only_AA	CPSF4	chr7	+	chr7:99050064-99051666;chr7:99050064-99051588	chr7:99050064-99051663		chr7:99051589-99051663;chr7:99051664-99051666	chr7:99051663-99051664;chr7:99051666-99051667		62.50	41.18	50.00	NA	NA	NA	62.50	54.55	55.56	44.83	65.38	NA	66.67	NA	57.89	63.16	55.17	NA	NA	33.33	46.15	NA	50.00	NA	NA	58.33	37.93	NA	54.55	NA	NA	57.69	70.00	27.27	56.25	NA	64.59	56.44	-8.15	0.421733	0.691465
K	intron_retention	PIGF	chr2	-	chr2:46808731-46819613				chr2:46808730-46808731;chr2:46819613-46819614		60.53	44.62	66.67	82.14	59.62	73.81	75.34	67.86	78.87	82.76	78.05	70.97	69.01	64.71	73.33	76.32	77.45	73.33	65.38	64.71	64.38	83.33	84.21	69.23	65.71	76.32	71.93	75.00	80.00	79.07	66.67	67.86	69.23	76.92	76.60	73.81	67.36	65.69	-1.67	0.947576	1.000000
K	alternative_acceptor	HSD17B4	chr5	+	chr5:118862915-118865595	chr5:118862915-118865588		chr5:118865589-118865595	chr5:118865595-118865596		90.32	76.36	100.00	NA	92.31	NA	96.20	100.00	89.47	92.50	92.45	89.74	95.52	93.75	97.22	100.00	100.00	96.30	85.71	81.25	82.93	89.29	86.96	86.96	NA	100.00	91.67	88.46	90.20	80.49	87.50	88.57	100.00	90.24	91.30	94.74	95.52	92.03	-3.48	0.799812	0.925732
K	jcn_only_AD	PDCD6	chr5	+	chr5:306870-311407	chr5:306876-311407		chr5:306870-306875	chr5:306869-306870		83.87	87.04	75.23	90.91	83.33	87.50	82.64	76.47	80.68	81.25	80.58	83.78	85.62	87.50	76.84	79.55	76.87	82.76	73.68	76.47	84.88	77.97	76.58	75.00	93.75	86.96	85.26	89.39	77.60	89.13	87.30	84.38	82.26	85.48	80.95	85.71	84.13	85.41	1.28	0.763583	0.878499
K	jcn_only_AA	TXN2	chr22	-	chr22:36876835-36877610;chr22:36876885-36877610	chr22:36876796-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		0.00	0.00	9.09	NA	4.00	NA	2.41	0.00	0.00	3.03	2.90	2.22	3.92	5.26	13.64	4.44	1.46	0.00	0.00	6.25	8.33	0.00	0.00	NA	0.00	0.00	6.25	0.00	12.90	0.00	9.09	7.69	0.00	0.00	0.00	0.00	0.00	2.63	2.63	0.220365	0.663989
N	alternative_donor	CD36	chr7	+	chr7:80303464-80305699	chr7:80303468-80305699		chr7:80303464-80303467	chr7:80303463-80303464		21.43	41.38	18.18	66.67	44.94	86.05	7.63	7.06	0.00	7.25	8.39	6.93	20.10	13.64	NA	23.42	18.65	24.32	71.03	42.86	10.00	38.98	34.65	43.61	71.23	16.67	13.11	19.59	23.81	31.46	26.92	25.00	57.30	22.10	24.22	20.16	49.34	19.05	-30.29	0.092359	0.480075
K	intron_retention	GPAA1	chr8	+	chr8:145140647-145140784				chr8:145140646-145140647;chr8:145140784-145140785		0.00	0.44	0.00	2.22	1.97	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	2.86	0.65	2.94	1.45	0.00	2.16	0.00	1.43	0.00	2.13	2.08	0.00	5.97	0.45	0.00	0.00	0.00	0.45	0.00	-0.45	0.958866	1.000000
K	intron_retention	MR1	chr1	+	chr1:181021647-181022708				chr1:181021646-181021647;chr1:181022708-181022709		10.00	0.00	5.41	NA	0.00	0.00	0.00	1.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	3.12	8.33	4.55	4.55	0.00	3.28	0.00	0.00	0.00	4.35	0.00	2.56	0.00	0.00	9.68	4.88	0.00	2.00	2.00	0.306538	1.000000
N	alternative_acceptor		chr14	+	chr14:104167065-104168410	chr14:104167065-104167537		chr14:104167538-104168410	chr14:104168410-104168411		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	93.33	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	cassette	NARF	chr17	+	chr17:80426773-80436675;chr17:80426773-80436446	chr17:80426773-80430439;chr17:80430575-80436446,chr17:80430575-80436675		chr17:80430440-80430574			100.00	100.00	98.65	NA	100.00	NA	100.00	94.44	97.06	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	93.62	100.00	NA	91.30	100.00	NA	100.00	94.52	NA	100.00	100.00	100.00	97.33	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175944	0.709176
N	jcn_only_AA	SHARPIN	chr8	-	chr8:145154306-145154412	chr8:145154334-145154412		chr8:145154306-145154333	chr8:145154305-145154306		100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	96.43	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	96.77	100.00	94.12	100.00	100.00	96.88	100.00	100.00	0.00	0.519959	0.760908
K	jcn_only_AD	EMD	chrX	+	chrX:153607898-153608049	chrX:153607927-153608049		chrX:153607898-153607926	chrX:153607897-153607898		100.00	100.00	100.00	100.00	100.00	NA	96.43	100.00	100.00	92.45	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	95.35	94.74	100.00	100.00	100.00	NA	95.52	100.00	100.00	98.57	100.00	1.43	0.185548	0.657607
K	cassette	PHF11	chr13	+	chr13:50098353-50100522	chr13:50098353-50099908;chr13:50100074-50100522		chr13:50099909-50100073			3.45	2.86	2.99	4.88	2.63	0.00	0.00	0.83	2.27	1.33	0.00	0.71	0.00	1.94	3.16	1.39	0.00	0.00	0.00	3.12	0.00	2.13	2.50	4.40	0.00	4.35	5.66	5.75	2.22	3.43	4.94	4.65	5.26	4.84	5.26	4.29	0.00	3.29	3.29	0.147046	0.709176
N	cassette	ATP6V0B	chr1	+	chr1:44440776-44441761;chr1:44440970-44441761;chr1:44440780-44441761;chr1:44441260-44441761	chr1:44440970-44441471,chr1:44440776-44441471,chr1:44440780-44441471,chr1:44441260-44441471;chr1:44441521-44441761		chr1:44441472-44441520			72.85	66.94	67.25	68.50	73.85	79.66	95.71	94.55	94.61	95.10	93.94	96.44	96.36	94.41	89.09	94.41	95.98	97.41	71.29	73.14	82.94	71.72	70.12	78.66	72.06	82.17	76.97	87.97	90.75	90.86	78.95	67.03	71.53	76.47	75.48	77.62	71.80	80.56	8.77	0.597369	0.849174
N	jcn_only_AD	HPS1	chr10	-	chr10:100178015-100179801	chr10:100178015-100179797		chr10:100179798-100179801	chr10:100179801-100179802		0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.257267	0.657607
N	jcn_only_AA	LGMN	chr14	-	chr14:93185186-93198993;chr14:93197765-93198993;chr14:93185190-93198993	chr14:93183793-93198993					6.87	7.39	5.28	5.38	9.73	9.38	5.09	6.84	5.62	5.99	5.98	5.71	6.06	6.24	5.33	5.19	4.83	5.24	8.57	4.04	3.97	5.17	5.16	5.24	14.93	6.46	6.60	6.01	5.13	6.43	5.44	3.76	11.54	7.92	6.83	6.17	7.98	6.35	-1.63	0.111127	0.663989
K	intron_retention		chr1	-	chr1:153925311-153925741				chr1:153925310-153925311;chr1:153925741-153925742		3.51	0.00	8.63	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	NA	7.69	8.33	0.00	5.26	13.64	0.00	8.47	7.06	6.67	0.00	0.00	8.70	15.62	NA	12.12	8.33	12.82	0.00	5.60	5.60	0.142024	1.000000
K	intron_retention	CTSH	chr15	-	chr15:79237257-79237292				chr15:79237256-79237257;chr15:79237292-79237293		84.69	83.05	82.84	81.82	81.40	NA	77.39	83.64	81.90	77.18	79.72	73.55	78.82	83.00	81.56	78.57	79.09	78.18	70.97	78.09	68.47	78.69	78.34	71.76	81.82	82.57	82.47	72.55	80.77	73.47	71.15	77.37	72.73	78.41	83.08	79.56	78.10	82.78	4.68	0.400745	1.000000
N	jcn_only_AD	ANAPC13	chr3	-	chr3:134201774-134202097;chr3:134201774-134204157;chr3:134201774-134204542;chr3:134201774-134204161	chr3:134201774-134204793		chr3:134202098-134204157;chr3:134204158-134204161;chr3:134204162-134204542;chr3:134204543-134204793	chr3:134204157-134204158;chr3:134204161-134204162;chr3:134204542-134204543;chr3:134204793-134204794		21.05	50.00	37.50	NA	37.50	NA	50.00	0.00	34.38	84.62	48.94	42.11	56.76	17.65	16.67	25.00	31.43	20.00	54.55	25.00	42.86	NA	46.43	50.00	NA	25.00	45.71	43.75	48.00	56.25	0.00	38.46	81.25	26.67	43.75	16.67	54.55	19.35	-35.20	0.000370	0.060704
N	alternative_donor	COA5	chr2	-	chr2:99220655-99224540;chr2:99220655-99224725	chr2:99220655-99224769		chr2:99224541-99224725;chr2:99224726-99224769	chr2:99224725-99224726;chr2:99224769-99224770		100.00	97.50	95.45	NA	100.00	100.00	94.44	100.00	96.55	100.00	92.31	100.00	97.22	NA	95.65	100.00	100.00	NA	96.55	100.00	100.00	NA	96.00	100.00	95.45	86.67	100.00	NA	100.00	100.00	95.00	97.06	100.00	NA	100.00	100.00	96.88	100.00	3.12	0.854576	0.960074
N	alternative_acceptor	SPG7	chr16	+	chr16:89620972-89622285;chr16:89620972-89623294	chr16:89620972-89622328		chr16:89622286-89622328;chr16:89622329-89623294	chr16:89622328-89622329;chr16:89623294-89623295		0.00	2.44	2.56	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.33	0.00	4.00	0.00	2.94	0.00	0.00	10.00	0.00	2.78	0.00	3.23	0.00	3.23	0.00	0.00	0.00	0.189999	0.660713
N	jcn_only_AD	TCN2	chr22	+	chr22:31009241-31010335;chr22:31008949-31010335	chr22:31009030-31010335		chr22:31008949-31009029;chr22:31009030-31009240	chr22:31008948-31008949;chr22:31009029-31009030		86.36	100.00	100.00	NA	100.00	NA	92.05	94.01	98.77	92.19	93.90	94.51	96.00	92.86	95.38	97.14	96.88	95.24	91.67	90.24	100.00	100.00	93.94	95.31	100.00	97.25	97.78	98.11	97.06	95.38	90.91	90.24	100.00	94.87	93.33	94.79	98.00	91.88	-6.12	0.061773	0.558623
N	alternative_first_exon	COA6	chr1	+	chr1:234509587-234509975;chr1:234492837-234509975	chr1:234509425-234509975	chr1:234509429-234509586;chr1:234492752-234492836	chr1:234509202-234509424			100.00	86.36	94.64	100.00	96.00	89.47	86.79	95.24	85.00	97.83	89.80	94.74	89.36	96.67	87.18	91.23	91.11	80.00	86.96	92.00	93.85	90.48	96.55	92.86	85.71	89.74	93.75	97.78	90.57	97.22	97.10	96.25	91.11	93.75	95.00	97.14	86.88	95.95	9.08	0.002847	0.025394
N	jcn_only_AA	RBM26	chr13	-	chr13:79889129-79896483;chr13:79895437-79896483;chr13:79889126-79896483	chr13:79894846-79896483		chr13:79889126-79889128;chr13:79889129-79894845;chr13:79894846-79895436	chr13:79889125-79889126;chr13:79889128-79889129;chr13:79894845-79894846		84.62	95.24	91.30	NA	100.00	NA	88.24	81.82	100.00	100.00	96.00	NA	95.45	92.31	95.83	91.30	88.89	NA	100.00	88.24	95.24	100.00	90.32	NA	100.00	100.00	91.67	100.00	100.00	93.33	NA	91.30	93.75	82.61	89.47	100.00	95.34	88.24	-7.11	0.145451	0.663989
K	intron_retention		chr17	-	chr17:47010709-47013531				chr17:47010708-47010709;chr17:47013531-47013532		2.20	2.40	4.90	2.41	2.34	2.65	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	1.27	1.22	1.37	1.61	1.24	4.41	1.41	1.75	2.17	1.47	1.30	3.19	3.57	7.14	2.73	5.32	3.79	3.05	1.34	1.48	0.15	0.792949	1.000000
K	intron_retention		chr7	-	chr7:45002724-45003647				chr7:45002723-45002724;chr7:45003647-45003648		2.59	1.44	3.29	3.46	0.00	3.02	0.00	0.80	1.00	0.00	0.00	6.67	0.00	1.08	3.82	2.00	0.00	4.17	1.35	2.59	2.35	5.88	0.00	6.67	1.09	2.52	1.91	5.58	2.83	4.77	2.18	2.44	0.00	3.17	0.00	4.51	0.55	2.35	1.81	0.299593	1.000000
K	intron_retention	TBC1D20	chr20	-	chr20:419940-420891				chr20:419939-419940;chr20:420891-420892		0.00	0.00	4.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	NDUFA2	chr5	-	chr5:140018842-140026840;chr5:140025311-140026840	chr5:140025264-140026840		chr5:140018842-140025263;chr5:140025264-140025310	chr5:140018841-140018842;chr5:140025263-140025264		93.48	97.46	96.17	95.09	95.93	96.91	93.64	92.54	88.46	91.03	86.41	90.28	94.64	95.00	94.06	93.53	86.42	93.62	94.58	93.52	93.70	94.29	93.68	92.96	97.99	94.03	94.35	97.47	95.88	96.75	94.83	94.61	95.47	90.72	96.79	92.74	95.06	93.78	-1.28	0.064441	0.663989
N	cassette	DECR1	chr8	+	chr8:91033285-91054966;chr8:91033285-91054955	chr8:91033285-91049068;chr8:91049169-91054966,chr8:91049169-91054955		chr8:91049069-91049168			96.88	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.02	94.94	96.55	100.00	98.11	100.00	96.88	100.00	98.25	100.00	100.00	100.00	100.00	94.03	97.30	96.88	100.00	95.71	98.65	100.00	1.35	0.606304	0.853757
N	alternative_donor	STARD10,TAF1D	chr11	-	chr11:93463879-93464315;chr11:93463879-93464324	chr11:93463879-93464311		chr11:93464312-93464315;chr11:93464316-93464324	chr11:93464315-93464316;chr11:93464324-93464325		11.76	0.00	8.70	1.92	4.08	0.00	NA	NA	NA	0.00	6.67	NA	7.69	NA	7.69	5.00	6.67	0.00	1.49	5.56	2.44	9.76	5.26	10.81	0.00	8.33	4.76	4.55	6.67	5.56	5.41	6.82	1.22	5.00	9.68	7.69	1.22	6.95	5.73	0.029595	0.335630
K	intron_retention		chr14	+	chr14:23793262-23793346				chr14:23793261-23793262;chr14:23793346-23793347		4.69	0.00	5.43	0.00	0.88	0.00	0.00	0.00	0.00	0.55	0.43	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.00	1.49	0.00	4.41	2.04	1.54	0.00	2.56	1.18	1.10	0.62	1.18	11.43	6.58	0.00	4.30	3.09	2.67	0.00	2.02	2.02	0.266013	1.000000
N	alternative_acceptor	MAD2L2	chr1	-	chr1:11736167-11736904	chr1:11736198-11736904		chr1:11736167-11736197	chr1:11736166-11736167		100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	96.43	98.72	100.00	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	100.00	94.64	100.00	100.00	95.00	96.97	100.00	100.00	0.00	0.892614	0.963064
N	alternative_acceptor	MAVS	chr20	+	chr20:44576078-44576214	chr20:44576078-44576162		chr20:44576163-44576214	chr20:44576214-44576215		100.00	85.00	100.00	100.00	94.44	100.00	100.00	100.00	95.45	NA	100.00	NA	100.00	100.00	89.47	100.00	100.00	NA	85.37	100.00	91.67	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.74	93.48	90.57	95.65	92.31	100.00	95.28	100.00	4.72	0.204479	0.668672
K	cassette	ACAA1	chr3	-	chr3:38175501-38178082	chr3:38175501-38175999;chr3:38176044-38178082		chr3:38176000-38176043			0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.554774	0.821423
N	alternative_acceptor	ZDHHC12	chr9	-	chr9:131483760-131483929;chr9:131483777-131483929;chr9:131483810-131483929;chr9:131483680-131483929	chr9:131483782-131483929		chr9:131483680-131483759;chr9:131483760-131483776;chr9:131483777-131483781;chr9:131483782-131483809	chr9:131483679-131483680;chr9:131483759-131483760;chr9:131483776-131483777;chr9:131483781-131483782		89.36	78.57	90.70	100.00	94.29	NA	88.89	91.18	90.00	92.00	88.00	85.71	87.84	88.10	92.00	83.33	92.73	82.35	89.74	89.47	88.52	NA	85.29	NA	63.33	78.57	68.63	80.00	77.14	81.82	80.36	78.33	72.97	84.62	76.92	79.17	83.20	88.73	5.52	0.257750	0.709013
K	intron_retention	RNASEK,RNASEK-C17orf49	chr17	+	chr17:6916077-6916984				chr17:6916076-6916077;chr17:6916984-6916985		8.14	4.93	7.63	11.29	5.56	5.45	0.65	6.17	3.26	1.95	3.21	1.79	0.96	6.33	4.82	5.79	0.97	3.03	3.37	7.27	4.17	10.53	5.50	9.21	1.35	11.90	5.69	8.70	4.42	5.00	14.86	8.93	5.61	11.54	6.96	7.50	2.36	7.71	5.34	0.035204	1.000000
K	cassette	NUMA1	chr11	-	chr11:71721901-71723940	chr11:71721901-71723446;chr11:71723489-71723940		chr11:71723447-71723488			10.64	25.00	27.47	NA	13.33	NA	39.71	20.97	28.00	24.62	27.87	29.03	41.25	23.08	32.47	28.07	21.54	40.35	NA	25.00	25.00	20.69	18.33	22.89	42.31	36.84	35.53	20.83	23.40	26.67	25.00	52.00	NA	27.08	25.81	27.91	40.48	24.04	-16.44	0.040100	0.500342
N	alternative_acceptor	CDK16	chrX	+	chrX:47088044-47088104;chrX:47088044-47088129;chrX:47088044-47088133	chrX:47088044-47088418		chrX:47088105-47088129;chrX:47088130-47088133;chrX:47088134-47088418	chrX:47088129-47088130;chrX:47088133-47088134;chrX:47088418-47088419		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	NGDN	chr14	+	chr14:23946566-23946711				chr14:23946565-23946566;chr14:23946711-23946712		13.33	6.19	4.17	1.75	1.47	1.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.92	6.45	2.13	0.00	4.26	2.56	7.27	0.00	3.45	3.45	2.63	2.13	7.50	12.50	2.15	5.56	4.44	6.82	3.54	3.23	-0.31	0.945360	1.000000
N	alternative_donor		chr1	-	chr1:54394114-54395748	chr1:54394114-54395711		chr1:54395712-54395748	chr1:54395748-54395749		91.67	100.00	100.00	NA	92.00	100.00	100.00	89.47	100.00	93.75	91.18	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	94.12	NA	100.00	100.00	100.00	100.00	94.44	100.00	94.12	100.00	100.00	96.16	-3.84	0.273279	0.645608
K	cassette	GPI	chr19	+	chr19:34857757-34868407	chr19:34857757-34859553;chr19:34859608-34868407		chr19:34859554-34859607			100.00	100.00	100.00	NA	100.00	NA	98.84	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.518733	0.795429
K	alternative_last_exon	CTC-429P9.4,SMIM7	chr19	-	chr19:16758073-16764845	chr19:16763773-16764845	chr19:16755556-16758072	chr19:16763167-16763772			28.57	28.57	20.00	36.36	23.91	52.50	10.42	12.50	12.90	21.43	16.67	28.57	10.42	19.23	22.22	24.00	17.78	35.29	36.00	29.41	22.86	31.58	27.78	56.25	26.32	23.53	23.81	25.00	19.61	40.74	25.00	25.00	30.95	32.26	26.32	38.46	27.45	24.27	-3.18	0.888736	0.939232
K	intron_retention	HAUS4	chr14	-	chr14:23419620-23420763				chr14:23419619-23419620;chr14:23420763-23420764		0.00	3.57	4.76	NA	7.41	NA	0.00	2.78	2.27	0.00	4.08	0.00	1.49	0.00	2.70	0.00	5.00	0.00	14.29	0.00	8.70	0.00	0.00	0.00	32.00	9.09	9.09	NA	0.00	10.00	0.00	4.00	23.08	NA	0.00	0.00	8.93	0.00	-8.93	0.436516	1.000000
K	intron_retention	PSME2	chr14	-	chr14:24614982-24615416				chr14:24614981-24614982;chr14:24615416-24615417		4.21	5.74	7.18	4.95	5.81	2.66	1.12	1.87	2.35	1.58	1.14	3.08	0.54	1.87	2.32	1.88	1.66	2.17	3.09	4.15	2.39	9.57	7.55	20.10	0.00	3.53	6.12	7.31	4.24	5.35	2.99	6.55	1.61	14.56	7.92	14.67	1.37	3.26	1.89	0.600506	1.000000
K	intron_retention		chr16	-	chr16:67691757-67691888				chr16:67691756-67691757;chr16:67691888-67691889		7.69	2.38	5.00	0.00	2.63	0.00	NA	NA	7.14	NA	NA	NA	NA	NA	0.00	NA	NA	NA	2.67	10.00	8.57	NA	4.17	NA	0.00	0.00	4.35	NA	0.00	8.33	10.00	12.50	3.77	0.00	0.00	0.00	2.52	8.85	6.32	0.256182	1.000000
N	intron_retention		chr11	-	chr11:61732364-61732840				chr11:61732363-61732364;chr11:61732840-61732841		96.92	96.23	98.92	100.00	100.00	97.61	NA	100.00	100.00	100.00	100.00	100.00	NA	88.89	100.00	100.00	100.00	94.44	94.49	100.00	97.91	98.76	98.59	100.00	100.00	98.51	97.63	100.00	100.00	100.00	96.32	97.87	94.01	98.77	97.84	99.05	95.36	97.72	2.36	0.949717	1.000000
N	jcn_only_AA	TTYH3	chr7	+	chr7:2687273-2687592;chr7:2687273-2687547	chr7:2687273-2689200					0.00	12.50	8.86	NA	NA	NA	3.53	4.19	2.94	6.79	9.96	6.33	4.45	2.36	0.00	4.33	6.37	7.81	0.00	5.56	NA	3.28	10.66	5.56	0.00	3.33	0.00	5.80	8.11	6.67	3.03	6.25	NA	6.08	6.94	5.11	3.53	3.18	-0.35	0.690872	0.864632
K	intron_retention	RFXANK	chr19	+	chr19:19308061-19308329				chr19:19308060-19308061;chr19:19308329-19308330		8.11	7.14	9.09	13.64	10.42	5.26	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.38	0.00	0.00	0.00	6.06	6.45	5.41	NA	12.90	NA	17.33	2.44	7.84	0.00	5.88	10.53	13.79	7.89	5.77	11.11	8.00	13.79	5.91	4.45	-1.47	0.629935	1.000000
N	alternative_acceptor	RP11-421L21.3,RRNAD1	chr1	+	chr1:156705702-156706423	chr1:156705702-156706410		chr1:156706411-156706423	chr1:156706423-156706424		8.82	1.82	10.81	0.00	14.29	15.38	15.38	20.00	0.00	NA	NA	NA	0.00	5.88	16.00	NA	NA	NA	9.68	8.00	9.52	NA	5.88	NA	26.32	13.04	4.88	NA	21.43	NA	10.34	7.84	4.55	NA	9.09	8.33	7.12	9.58	2.46	0.767887	0.913895
K	alternative_donor	IK	chr5	+	chr5:140027748-140028055;chr5:140026895-140028055	chr5:140027510-140028055		chr5:140026895-140027509;chr5:140027510-140027747	chr5:140026894-140026895;chr5:140027509-140027510		93.33	96.88	90.48	NA	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	90.91	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.55	100.00	100.00	100.00	95.45	93.33	100.00	100.00	96.88	100.00	3.12	0.635234	0.835005
N	cassette	TNFSF12-TNFSF13,TNFSF13	chr17	+	chr17:7462615-7463365;chr17:7461693-7463162	chr17:7462615-7462940,chr17:7461693-7462940;chr17:7463020-7463162,chr17:7463020-7463365		chr17:7462941-7463019			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	98.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	CLASRP	chr19	+	chr19:45561141-45562525	chr19:45561157-45562525		chr19:45561141-45561156	chr19:45561140-45561141		84.62	75.00	91.49	NA	91.67	NA	100.00	84.21	91.30	NA	88.24	NA	88.24	84.62	82.14	92.86	100.00	100.00	83.33	70.97	85.19	NA	85.71	91.30	85.25	100.00	90.48	83.33	87.50	90.48	78.05	80.00	82.61	93.94	85.71	80.00	84.29	84.41	0.12	0.708170	0.847790
K	cassette	H2AFY	chr5	-	chr5:134705833-134734751	chr5:134705833-134724611;chr5:134724987-134734751		chr5:134724612-134724986			100.00	100.00	100.00	100.00	100.00	NA	99.49	100.00	100.00	100.00	99.27	99.34	100.00	100.00	94.12	100.00	98.94	100.00	100.00	100.00	100.00	98.68	98.85	100.00	NA	100.00	100.00	98.11	98.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_acceptor	SGSM3	chr22	+	chr22:40805530-40805691;chr22:40805530-40805685;chr22:40805530-40805694	chr22:40805530-40806135		chr22:40805686-40805691;chr22:40805692-40805694;chr22:40805695-40806135	chr22:40805691-40805692;chr22:40805694-40805695;chr22:40806135-40806136		4.55	2.34	0.00	13.64	3.64	12.24	5.56	NA	NA	NA	6.67	NA	4.35	NA	9.09	NA	0.00	NA	5.32	0.00	0.00	NA	5.41	NA	9.09	8.33	6.45	0.00	6.67	0.00	0.00	14.81	8.89	7.69	0.00	0.00	5.44	2.27	-3.16	0.292005	0.709013
K	alternative_acceptor	CTDSP2	chr12	-	chr12:58217789-58218009	chr12:58217873-58218009		chr12:58217789-58217872	chr12:58217788-58217789		87.10	79.17	92.50	NA	NA	NA	96.25	94.52	92.74	96.15	88.10	87.00	92.75	93.02	96.33	94.00	95.24	89.39	NA	100.00	100.00	NA	93.75	90.48	100.00	93.18	94.59	100.00	100.00	100.00	100.00	92.59	NA	100.00	87.50	89.29	94.50	93.85	-0.65	0.627297	0.856144
N	jcn_only_AA	SERBP1	chr1	-	chr1:67890643-67890765;chr1:67890670-67890765	chr1:67890661-67890765		chr1:67890643-67890660;chr1:67890661-67890669	chr1:67890642-67890643;chr1:67890660-67890661		44.23	57.14	46.22	48.98	48.61	43.75	59.33	54.17	53.72	57.26	56.09	51.20	59.45	54.00	60.66	56.87	56.51	60.00	57.50	55.93	58.90	48.89	57.72	50.78	35.71	55.88	58.02	49.54	58.33	53.26	46.67	56.16	47.22	51.82	53.33	46.61	57.32	54.09	-3.23	0.841006	0.937818
K	jcn_only_AA	IRF7	chr11	-	chr11:614532-614796	chr11:614535-614796		chr11:614532-614534	chr11:614531-614532		93.67	88.24	94.12	93.02	90.00	89.71	100.00	86.65	86.07	86.79	90.00	86.92	90.48	87.79	86.67	85.26	91.67	89.55	90.91	92.69	81.71	93.22	96.00	89.91	100.00	92.12	88.31	85.00	80.00	91.86	90.36	91.27	83.33	92.79	83.33	91.71	90.69	91.24	0.55	0.601545	0.814737
N	jcn_only_AA	RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479317	chr10:45478112-45479388		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		30.95	32.26	20.19	NA	NA	NA	17.65	22.97	18.14	14.65	13.41	11.40	13.91	23.10	17.76	13.76	10.98	13.85	NA	30.48	18.82	19.23	30.00	21.43	0.00	26.95	21.23	23.08	25.00	23.31	14.29	15.94	30.00	12.82	13.43	14.18	17.65	25.02	7.38	0.384361	0.663989
N	jcn_only_AA	TMEM18	chr2	-	chr2:676239-677288;chr2:675628-677288	chr2:675631-677288					100.00	100.00	95.00	100.00	100.00	100.00	91.67	92.59	94.92	98.44	97.50	93.62	86.27	93.55	92.54	93.62	93.10	95.74	100.00	92.86	100.00	95.83	100.00	100.00	NA	100.00	95.65	100.00	96.43	100.00	100.00	100.00	100.00	94.74	100.00	97.92	100.00	96.78	-3.22	0.787258	0.908316
K	jcn_only_AA	LIME1	chr20	+	chr20:62369001-62369197	chr20:62369001-62369173		chr20:62369174-62369197	chr20:62369197-62369198		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	93.33	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	RP11-343C2.11,VPS4A	chr16	+	chr16:69354673-69354953				chr16:69354672-69354673;chr16:69354953-69354954		4.17	5.26	5.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	1.39	0.00	1.61	0.00	0.00	0.00	0.00	0.00	5.88	3.70	5.00	3.28	2.88	1.82	0.00	0.00	3.45	1.61	0.00	2.04	2.44	4.62	0.00	7.69	4.84	3.26	0.81	1.22	0.41	0.991765	1.000000
K	intron_retention		chr18	+	chr18:21057051-21057142				chr18:21057050-21057051;chr18:21057142-21057143		19.57	58.82	22.64	12.50	NA	12.50	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	2.82	0.00	0.00	0.00	NA	23.33	26.92	17.65	14.29	18.75	NA	5.88	10.42	0.00	3.57	8.33	42.86	38.33	46.67	16.13	17.39	17.54	23.34	12.72	-10.61	0.806304	1.000000
N	cassette	SIKE1	chr1	-	chr1:115321906-115323057;chr1:115321906-115323069	chr1:115321906-115322730;chr1:115322837-115323057,chr1:115322837-115323069		chr1:115322731-115322836			NA	43.75	NA	NA	NA	NA	87.50	90.00	100.00	NA	93.33	NA	100.00	80.00	91.30	81.82	100.00	NA	NA	NA	80.00	NA	90.00	NA	54.55	70.59	80.00	NA	NA	NA	81.82	83.33	70.00	NA	NA	NA	70.00	80.91	10.91	0.431129	0.737930
K	alternative_first_exon	BANF1	chr11	+	chr11:65770307-65770705;chr11:65769985-65770705,chr11:65770042-65770705	chr11:65770511-65770705,chr11:65770542-65770705	chr11:65769699-65769984	chr11:65770253-65770510			5.00	3.57	8.00	0.00	1.82	0.00	4.65	5.56	2.78	0.00	3.92	0.00	1.94	0.00	0.00	1.06	1.09	0.00	0.00	5.88	2.44	5.13	2.35	0.00	9.38	8.33	10.34	8.33	12.09	3.70	6.25	18.18	9.09	3.12	7.84	2.86	4.11	5.72	1.61	0.840261	0.890276
K	intron_retention	TCIRG1	chr11	+	chr11:67816762-67817129				chr11:67816761-67816762;chr11:67817129-67817130		32.31	21.88	33.64	34.50	35.15	22.84	4.46	8.68	8.82	4.82	7.29	1.88	9.73	10.99	20.35	10.61	7.66	0.83	22.73	34.12	23.75	32.81	35.87	25.29	17.81	33.01	35.66	32.14	33.83	28.57	29.26	36.12	17.62	35.40	33.96	27.54	17.71	30.79	13.07	0.381257	1.000000
N	jcn_only_AD	STX8	chr17	-	chr17:9281971-9341113;chr17:9281971-9395145	chr17:9281971-9294467		chr17:9294468-9341113;chr17:9341114-9395145	chr17:9341113-9341114;chr17:9395145-9395146		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	MAPKAPK2	chr1	+	chr1:206905265-206905919	chr1:206905265-206905382		chr1:206905383-206905919	chr1:206905919-206905920		13.77	16.67	15.75	11.67	7.32	12.94	8.45	7.75	6.75	9.95	9.24	11.75	11.11	8.57	7.30	10.56	10.48	11.23	0.00	12.70	13.64	12.78	6.03	12.26	NA	17.76	9.80	8.53	8.75	9.05	23.36	16.77	9.09	12.02	11.22	16.03	9.09	13.23	4.14	0.206527	0.669309
N	jcn_only_AA	COMMD7	chr20	-	chr20:31319448-31331113;chr20:31315950-31331113	chr20:31315947-31331113		chr20:31315947-31315949;chr20:31315950-31319447	chr20:31315946-31315947;chr20:31315949-31315950		9.80	0.00	4.84	NA	3.33	NA	9.52	9.26	6.82	4.35	15.29	10.20	13.73	10.17	8.89	12.70	8.75	11.11	18.18	3.12	10.53	12.50	3.33	10.81	NA	11.11	6.82	5.71	9.62	5.26	10.53	3.77	8.33	15.15	4.00	8.33	9.52	9.98	0.46	0.781198	0.905101
K	intron_retention	RARS2	chr6	-	chr6:88226599-88227886				chr6:88226598-88226599;chr6:88227886-88227887		0.00	0.00	5.13	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	3.33	0.00	3.57	1.89	6.45	0.00	0.00	4.76	6.25	0.00	2.78	0.00	2.08	0.00	3.23	0.00	4.35	0.00	0.00	0.00	0.594508	1.000000
K	cassette	EIF4B	chr12	+	chr12:53416412-53421798	chr12:53416412-53421565;chr12:53421704-53421798		chr12:53421566-53421703			80.00	100.00	95.52	NA	100.00	NA	96.97	100.00	100.00	99.15	97.75	96.55	97.50	96.30	96.05	99.20	97.48	100.00	NA	91.30	100.00	100.00	95.89	95.00	NA	100.00	94.55	100.00	96.88	100.00	86.96	93.48	100.00	96.88	96.15	96.83	98.75	93.80	-4.95	0.116757	0.709176
K	intron_retention	ISYNA1	chr19	-	chr19:18546294-18546372				chr19:18546293-18546294;chr19:18546372-18546373		2.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	5.56	0.00	NA	0.00	NA	7.89	0.00	5.88	NA	NA	NA	7.69	2.86	3.33	NA	7.14	4.00	1.67	3.78	2.11	0.857371	1.000000
N	alternative_acceptor	DCAF15	chr19	+	chr19:14070708-14070795	chr19:14070708-14070769		chr19:14070770-14070795	chr19:14070795-14070796		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	8.33	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.13	0.00	0.00	2.94	4.17	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	HDAC10,MAPK12	chr22	-	chr22:50686206-50686318				chr22:50686205-50686206;chr22:50686318-50686319		7.14	10.34	16.67	0.00	6.67	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	NA	NA	6.90	8.33	6.25	NA	10.71	0.00	4.00	7.14	13.33	0.00	13.04	0.00	13.33	22.22	0.00	12.50	13.33	13.64	2.00	7.14	5.14	0.541115	1.000000
N	alternative_donor	NDUFB1	chr14	-	chr14:74756822-74757044	chr14:74756822-74756993		chr14:74756994-74757044	chr14:74757044-74757045		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	94.12	100.00	91.67	100.00	100.00	100.00	95.00	81.82	96.15	NA	NA	NA	NA	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	83.33	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
K	cassette	SNX14	chr6	-	chr6:86223614-86224223	chr6:86223614-86223787;chr6:86223953-86224223		chr6:86223788-86223952			100.00	100.00	100.00	92.86	96.43	100.00	100.00	94.74	97.62	90.00	95.92	100.00	95.74	98.28	100.00	92.31	90.91	88.24	100.00	100.00	95.00	100.00	95.38	95.24	100.00	100.00	98.65	90.32	93.85	96.77	94.44	100.00	90.24	90.91	95.56	97.06	100.00	99.14	-0.86	0.903023	0.971172
N	jcn_only_AD	ABCF1	chr6	+	chr6:30551472-30551581	chr6:30551486-30551581		chr6:30551472-30551485	chr6:30551471-30551472		100.00	100.00	94.55	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	0.00	0.363217	0.657607
N	cassette	KIFC3	chr16	-	chr16:57792822-57793639;chr16:57792822-57794637	chr16:57792822-57793036;chr16:57793066-57793639,chr16:57793066-57794637		chr16:57793037-57793065			95.41	98.04	94.53	92.98	91.41	91.67	95.00	100.00	100.00	100.00	94.29	NA	100.00	95.24	100.00	100.00	100.00	NA	94.34	94.50	92.86	92.00	84.00	100.00	100.00	93.33	95.61	90.74	92.31	94.12	96.88	94.35	100.00	93.48	89.29	100.00	99.02	95.32	-3.70	0.191904	0.709176
N	alternative_acceptor	ENTPD6	chr20	+	chr20:25204794-25205840;chr20:25204794-25205821	chr20:25204794-25205797		chr20:25205798-25205821;chr20:25205822-25205840	chr20:25205821-25205822;chr20:25205840-25205841		31.25	32.14	32.14	NA	35.00	NA	14.00	22.22	18.60	15.79	15.56	10.00	20.51	22.22	19.57	20.83	10.26	10.00	28.57	37.14	26.32	33.33	30.95	40.00	23.81	20.51	27.27	14.29	29.73	25.00	33.33	31.25	29.41	29.41	29.41	37.04	26.19	26.73	0.55	0.460704	0.762514
N	alternative_acceptor	SUCLG1	chr2	-	chr2:84660898-84668170;chr2:84663252-84668170	chr2:84660560-84668170		chr2:84660560-84660897;chr2:84660898-84663251	chr2:84660559-84660560;chr2:84660897-84660898		100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.97	100.00	99.09	100.00	98.18	98.48	98.84	100.00	100.00	97.62	100.00	97.56	99.00	97.14	100.00	97.14	98.08	100.00	100.00	100.00	100.00	98.33	100.00	97.01	97.56	98.48	100.00	100.00	0.00	0.258958	0.709013
K	intron_retention	FTSJ3	chr17	-	chr17:61897534-61897614				chr17:61897533-61897534;chr17:61897614-61897615		3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	5.33	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.752266	1.000000
N	alternative_donor	SMC5	chr9	+	chr9:72965388-72967106	chr9:72966633-72967106		chr9:72965388-72966632	chr9:72965387-72965388		8.33	0.00	8.70	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	5.88	0.00	NA	NA	0.00	0.00	0.00	6.67	5.88	5.26	0.00	0.00	0.00	0.373901	0.650093
N	alternative_donor	ALYREF	chr17	-	chr17:79846460-79846991;chr17:79846460-79846751	chr17:79846460-79847057		chr17:79846752-79846991;chr17:79846992-79847057	chr17:79846991-79846992;chr17:79847057-79847058		100.00	99.44	97.70	100.00	100.00	99.52	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.63	100.00	100.00	100.00	97.14	99.31	99.43	98.95	98.63	100.00	100.00	98.70	100.00	99.42	98.74	95.00	95.96	98.73	100.00	98.67	98.21	100.00	100.00	0.00	0.309337	0.650093
K	jcn_only_AD	SRRT	chr7	+	chr7:100483384-100483483	chr7:100483396-100483483		chr7:100483384-100483395	chr7:100483383-100483384		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	5.66	0.00	NA	0.00	5.88	0.00	5.88	0.00	3.57	3.17	0.00	5.56	4.00	4.88	0.00	0.00	0.00	0.528661	0.754861
K	alternative_donor	RPSA	chr3	+	chr3:39448326-39449111;chr3:39448574-39449111	chr3:39448256-39449111		chr3:39448256-39448325;chr3:39448326-39448573	chr3:39448255-39448256;chr3:39448325-39448326		96.77	100.00	98.86	100.00	99.41	100.00	99.76	97.30	100.00	100.00	100.00	99.52	99.82	100.00	100.00	99.80	99.81	100.00	100.00	95.65	100.00	99.32	99.59	99.33	100.00	100.00	98.55	100.00	100.00	100.00	93.75	95.00	100.00	100.00	99.46	100.00	100.00	97.03	-2.97	0.043913	0.375646
K	jcn_only_AA	SNF8	chr17	-	chr17:47009077-47010566	chr17:47009080-47010566		chr17:47009077-47009079	chr17:47009076-47009077		95.10	92.96	94.06	95.19	93.10	92.67	95.19	97.92	92.59	95.00	96.77	93.65	94.83	90.91	94.44	92.92	96.80	95.65	93.75	95.60	93.51	96.20	93.71	92.65	93.48	91.23	97.87	90.28	94.49	94.23	93.41	96.83	94.05	92.63	92.09	94.29	93.90	94.25	0.35	0.990086	0.997790
N	alternative_donor	NARF	chr17	+	chr17:80441656-80442688	chr17:80442226-80442688		chr17:80441656-80442225	chr17:80441655-80441656		11.02	7.37	12.93	21.43	6.15	8.57	2.94	5.56	9.09	4.55	2.94	7.14	4.65	12.50	15.00	7.69	2.63	10.00	4.41	8.45	8.33	18.18	9.68	21.21	5.13	9.38	16.04	14.29	10.00	16.67	10.17	9.92	5.13	12.00	15.62	25.93	4.89	9.78	4.88	0.003607	0.144201
K	intron_retention		chr17	-	chr17:26875120-26875609				chr17:26875119-26875120;chr17:26875609-26875610		7.41	0.00	8.16	NA	16.67	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.27	0.00	0.00	NA	NA	0.00	0.00	NA	10.53	NA	0.00	8.33	8.57	NA	8.33	NA	NA	3.12	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.485800	1.000000
N	jcn_only_AD	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130929817;chr9:130929444-130931330	chr9:130929444-130931354		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		14.29	17.95	7.55	19.23	15.28	9.52	16.22	7.69	9.38	19.23	9.52	6.25	7.69	0.00	10.53	7.32	9.80	8.70	17.46	18.75	15.79	11.76	10.00	14.29	12.50	9.09	11.32	7.14	13.19	5.41	0.00	18.87	17.19	15.00	14.29	13.51	16.70	8.39	-8.31	0.099602	0.639657
K	intron_retention		chr4	-	chr4:83275308-83276456				chr4:83275307-83275308;chr4:83276456-83276457		11.65	10.09	17.07	16.39	9.05	9.46	0.79	1.12	0.00	0.00	0.70	0.00	1.14	1.20	2.04	0.52	0.00	0.00	8.76	11.54	9.84	10.78	6.70	8.65	14.84	12.50	11.19	6.03	8.04	8.28	12.86	20.93	8.92	16.52	10.00	13.45	8.84	11.59	2.75	0.918304	1.000000
N	alternative_acceptor	AP2M1	chr3	+	chr3:183900657-183901269	chr3:183900657-183901255		chr3:183901256-183901269	chr3:183901269-183901270		2.72	2.16	2.70	1.59	1.71	1.53	0.55	0.82	0.60	0.00	0.47	0.00	0.24	0.00	0.79	0.30	0.18	0.00	3.53	2.30	2.46	2.69	2.72	1.57	3.33	3.55	3.76	1.65	2.79	1.76	5.34	6.78	4.30	1.13	3.18	1.79	2.75	2.51	-0.24	0.922558	0.978996
K	intron_retention		chr9	+	chr9:131389778-131390203				chr9:131389777-131389778;chr9:131390203-131390204		6.20	3.08	5.63	0.00	1.96	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	1.00	0.00	0.00	0.00	2.33	1.61	0.00	0.00	3.17	0.00	0.00	0.76	2.10	0.00	0.00	0.00	1.79	4.38	0.00	0.00	2.63	0.00	0.65	1.19	0.54	0.880254	1.000000
K	alternative_acceptor	AP5Z1	chr7	+	chr7:4826060-4827264	chr7:4826060-4827226		chr7:4827227-4827264	chr7:4827264-4827265		12.24	12.77	13.56	4.35	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.45	1.23	0.00	0.00	6.25	10.34	13.04	10.53	6.35	12.50	26.32	7.94	9.09	5.56	4.26	6.82	23.81	17.78	13.04	8.33	8.51	13.75	9.51	9.14	-0.37	0.903946	0.967448
K	cassette	CCDC90B	chr11	-	chr11:82973009-82984689	chr11:82973009-82976906;chr11:82977022-82984689		chr11:82976907-82977021			100.00	100.00	100.00	100.00	100.00	100.00	96.88	97.30	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	94.87	95.83	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	97.83	93.10	100.00	100.00	100.00	100.00	100.00	0.00	0.363262	0.709176
N	alternative_acceptor	ABTB1,KIF9-AS1	chr3	+	chr3:127391925-127393233;chr3:127391925-127393210	chr3:127391925-127393187		chr3:127393188-127393210;chr3:127393211-127393233	chr3:127393210-127393211;chr3:127393233-127393234		3.57	3.12	17.24	NA	5.88	NA	2.13	6.38	5.26	6.67	7.89	7.14	6.98	5.13	11.54	4.76	3.45	NA	NA	5.26	NA	18.18	10.71	NA	5.00	13.33	8.82	10.00	6.90	10.00	4.35	3.57	NA	NA	6.67	7.69	4.06	5.20	1.13	0.293176	0.709013
K	cassette	CHD3	chr17	+	chr17:7812657-7814164	chr17:7812657-7813756;chr17:7813910-7814164		chr17:7813757-7813909			95.83	100.00	94.64	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	93.33	100.00	91.30	NA	100.00	NA	97.22	100.00	95.24	100.00	100.00	90.91	100.00	92.86	96.08	NA	95.45	100.00	85.71	97.96	92.50	100.00	94.44	100.00	98.61	95.83	-2.78	0.474566	0.770157
N	alternative_acceptor	AC005944.2,NUCB1	chr19	+	chr19:3053334-3053584	chr19:3053334-3053404		chr19:3053405-3053584	chr19:3053584-3053585		84.65	85.11	84.91	81.67	81.63	84.71	84.46	89.44	83.33	87.31	88.57	91.18	86.59	89.43	90.28	82.26	89.62	82.61	86.29	90.91	85.93	87.14	87.56	88.46	90.15	87.45	86.47	93.51	89.52	87.90	90.85	85.71	89.80	89.36	87.27	89.63	86.44	89.44	3.00	0.239859	0.694094
K	alternative_donor	SF1	chr11	-	chr11:64534724-64535042	chr11:64534724-64535038		chr11:64535039-64535042	chr11:64535042-64535043		12.50	5.88	9.57	5.00	5.26	9.09	4.55	3.92	3.77	4.72	7.69	7.89	2.70	2.33	5.61	6.19	5.13	6.90	10.00	5.56	2.86	9.52	5.63	8.57	NA	5.41	8.24	4.76	5.08	5.56	11.54	10.34	7.14	7.55	7.69	4.55	5.88	5.48	-0.40	0.704520	0.873207
N	jcn_only_AA	GAA	chr17	+	chr17:78079694-78081355	chr17:78079694-78079876		chr17:78079877-78081355	chr17:78081355-78081356		0.00	9.09	0.00	NA	12.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	27.78	1.37	0.00	0.00	0.00	0.00	9.52	0.00	0.00	0.00	2.94	0.00	0.00	0.00	25.00	1.82	0.00	0.00	9.30	0.00	-9.30	0.063054	0.663989
N	jcn_only_AD	UBALD2	chr17	+	chr17:74261707-74261987;chr17:74261620-74261987	chr17:74261485-74261987		chr17:74261485-74261619;chr17:74261620-74261706	chr17:74261484-74261485;chr17:74261619-74261620		0.00	6.45	1.43	0.00	0.00	4.55	0.00	0.00	2.17	1.98	1.52	2.52	2.11	0.83	1.56	2.08	0.00	0.76	4.88	2.44	1.15	0.00	1.33	4.17	NA	0.00	0.00	0.00	1.06	2.74	2.63	0.00	4.17	0.00	0.00	0.00	4.17	0.41	-3.75	0.088370	0.632469
N	cassette	ADAP2	chr17	+	chr17:29276389-29283258;chr17:29276389-29281495	chr17:29276389-29280305;chr17:29280369-29283258,chr17:29280369-29281495		chr17:29280306-29280368			73.85	58.62	72.22	NA	90.00	NA	97.86	97.07	94.20	100.00	96.11	100.00	97.19	96.02	97.44	100.00	98.81	100.00	47.37	73.68	84.62	61.54	79.71	92.31	75.00	83.05	70.59	95.24	83.33	NA	63.89	74.07	58.33	90.62	76.34	88.46	66.81	78.45	11.64	0.412421	0.727434
N	cassette	SFPQ	chr1	-	chr1:35642076-35643589	chr1:35642076-35642919;chr1:35643001-35643589		chr1:35642920-35643000			100.00	98.62	93.02	100.00	98.76	98.85	NA	NA	NA	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	99.07	100.00	100.00	100.00	100.00	100.00	99.08	100.00	95.92	100.00	98.31	97.22	100.00	98.73	98.91	100.00	96.77	100.00	98.99	100.00	1.01	0.002089	0.147524
K	alternative_last_exon	DDT	chr22	-	chr22:24315375-24315956;chr22:24313813-24315956	chr22:24315533-24315956	chr22:24313554-24313812	chr22:24315293-24315532			4.00	0.00	6.45	0.00	0.89	0.59	0.93	2.94	2.13	0.00	3.23	1.54	0.93	0.00	1.64	2.38	2.53	0.00	0.00	5.26	0.67	3.12	1.72	3.23	1.36	0.00	4.17	6.25	2.78	1.72	3.57	6.45	0.69	1.89	4.00	4.17	0.81	3.25	2.44	0.076975	0.281549
N	alternative_acceptor	STAB1	chr3	+	chr3:52537557-52537787;chr3:52537557-52537895	chr3:52537557-52537724		chr3:52537725-52537787;chr3:52537788-52537895	chr3:52537787-52537788;chr3:52537895-52537896		0.00	2.00	0.00	NA	NA	0.00	0.20	0.00	0.00	0.00	0.22	0.00	0.31	0.00	0.00	0.00	0.18	0.00	7.14	4.00	NA	0.00	0.90	0.00	4.81	0.00	3.03	0.00	2.17	0.00	NA	0.00	2.63	0.00	0.85	0.00	2.31	0.00	-2.31	0.168333	0.660713
K	intron_retention	C14orf159	chr14	+	chr14:91681901-91691027				chr14:91681900-91681901;chr14:91691027-91691028		13.33	18.33	NA	NA	15.38	NA	4.35	10.00	6.67	NA	0.00	NA	9.80	NA	37.50	NA	0.00	NA	8.57	18.75	6.67	NA	9.09	NA	0.00	27.78	NA	NA	11.76	NA	7.69	15.00	9.38	18.75	15.38	25.00	8.98	13.33	4.35	0.500644	1.000000
N	alternative_donor	QSOX1	chr1	+	chr1:180135721-180144455;chr1:180137364-180144455	chr1:180135727-180144455		chr1:180135721-180135726;chr1:180135727-180137363	chr1:180135720-180135721;chr1:180135726-180135727		97.52	96.77	98.15	NA	100.00	NA	100.00	98.59	99.67	100.00	100.00	100.00	100.00	99.32	98.99	100.00	100.00	100.00	NA	99.22	97.96	100.00	98.28	100.00	93.75	98.65	98.79	100.00	100.00	100.00	96.88	96.87	90.91	96.30	95.52	98.73	96.77	98.62	1.85	0.312139	0.650093
K	cassette	USF2	chr19	+	chr19:35760603-35761349	chr19:35760603-35760705;chr19:35760907-35761349		chr19:35760706-35760906			91.03	87.30	85.54	80.00	93.48	100.00	90.50	81.97	89.47	83.70	86.82	86.60	85.52	89.23	90.00	81.88	87.29	89.06	81.03	84.72	90.32	75.00	82.38	80.82	79.37	92.86	86.30	78.46	82.74	86.36	87.50	83.82	80.82	84.44	88.03	81.43	83.28	88.37	5.09	0.149845	0.709176
K	cassette	ATP5C1	chr10	+	chr10:7830227-7839009	chr10:7830227-7838083;chr10:7838119-7839009		chr10:7838084-7838118			100.00	100.00	100.00	100.00	100.00	NA	100.00	98.10	98.24	100.00	100.00	100.00	99.02	100.00	98.25	99.56	100.00	99.41	100.00	96.72	100.00	100.00	98.55	100.00	NA	100.00	95.70	100.00	100.00	100.00	94.29	92.75	100.00	100.00	97.76	99.19	100.00	99.05	-0.95	0.152206	0.709176
K	intron_retention	YIPF3	chr6	-	chr6:43483834-43484464				chr6:43483833-43483834;chr6:43484464-43484465		1.01	2.94	3.03	10.00	0.00	NA	2.38	0.00	1.32	3.23	3.08	0.00	1.22	1.52	1.37	0.00	1.89	0.00	0.00	2.90	0.00	8.00	3.90	4.65	0.00	1.22	3.12	4.00	2.00	3.45	1.79	3.41	0.00	5.00	5.36	5.06	0.61	1.37	0.76	0.770825	1.000000
N	alternative_acceptor		chr9	+	chr9:115923979-115925614;chr9:115923979-115925310	chr9:115923979-115925028		chr9:115925029-115925310;chr9:115925311-115925614	chr9:115925310-115925311;chr9:115925614-115925615		93.78	94.00	94.40	92.31	94.87	66.67	94.50	97.82	97.34	95.77	91.45	96.60	100.00	100.00	98.58	100.00	100.00	99.13	81.82	96.28	94.62	98.85	96.18	94.74	86.67	96.50	93.31	95.31	94.87	94.23	94.76	93.78	96.00	96.00	97.37	96.91	94.25	96.39	2.14	0.178574	0.660713
K	intron_retention	GPAA1	chr8	+	chr8:145138404-145138616				chr8:145138403-145138404;chr8:145138616-145138617		11.11	8.57	18.18	NA	7.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	NA	25.00	11.11	26.67	15.15	30.00	0.00	12.50	8.82	10.53	10.00	18.18	18.75	28.57	NA	12.00	8.57	11.11	0.00	11.80	11.80	0.307154	1.000000
K	cassette	TPRKB	chr2	-	chr2:73959413-73961555	chr2:73959413-73959710;chr2:73959828-73961555		chr2:73959711-73959827			14.29	37.04	17.86	NA	13.89	NA	18.52	18.18	23.81	9.38	16.28	15.00	20.51	23.08	18.18	8.11	14.00	5.56	16.67	16.67	18.18	13.33	14.63	6.67	13.33	11.76	14.29	13.33	11.11	9.09	6.67	18.52	16.67	15.00	10.26	16.13	17.59	15.48	-2.11	0.230720	0.709176
K	alternative_last_exon	HLA-F	chr6	+	chr6:29693821-29705898;chr6:29693821-29694659	chr6:29693821-29694179	chr6:29705899-29705965;chr6:29694660-29695073	chr6:29694180-29694303			94.25	95.00	97.83	97.14	94.74	98.25	90.91	89.54	92.18	83.33	82.35	76.27	90.91	91.82	92.74	95.56	NA	77.78	94.29	92.63	95.22	95.00	95.00	88.37	97.75	92.09	95.29	94.12	96.00	95.43	94.74	93.51	95.24	88.89	89.47	90.34	94.65	92.36	-2.29	0.288083	0.491468
N	jcn_only_AA		chr1	+	chr1:12089339-12089897;chr1:12089339-12089790	chr1:12089339-12089821		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		100.00	93.18	100.00	NA	NA	94.44	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	98.78	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.197386	0.663989
K	intron_retention	DAGLB	chr7	-	chr7:6449667-6449760				chr7:6449666-6449667;chr7:6449760-6449761		0.00	3.23	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	1.82	NA	9.09	0.00	0.00	NA	3.23	6.25	4.00	0.00	4.65	NA	0.00	0.00	5.13	NA	2.78	NA	0.00	0.00	3.03	0.00	0.00	8.33	2.42	0.00	-2.42	0.654727	1.000000
N	jcn_only_AD	MRAS	chr3	+	chr3:138117411-138119375;chr3:138118639-138119375	chr3:138117415-138119375		chr3:138117411-138117414;chr3:138117415-138118638	chr3:138117410-138117411;chr3:138117414-138117415		0.00	NA	8.57	NA	13.33	NA	6.67	7.22	4.69	12.50	5.91	7.79	8.11	5.17	0.00	4.85	5.47	5.36	0.00	0.00	3.23	0.00	3.57	8.45	NA	8.00	10.34	10.00	6.67	3.45	4.26	0.00	0.00	5.62	4.94	3.95	3.33	4.71	1.38	0.878167	0.939062
N	jcn_only_AA		chr13	+	chr13:42032607-42033179;chr13:42032607-42040964	chr13:42032607-42040958		chr13:42033180-42040958;chr13:42040959-42040964	chr13:42040958-42040959;chr13:42040964-42040965		100.00	100.00	100.00	100.00	98.61	100.00	100.00	100.00	NA	98.79	99.43	100.00	100.00	100.00	NA	97.48	100.00	100.00	100.00	100.00	100.00	99.52	99.68	100.00	100.00	100.00	100.00	98.52	99.62	100.00	85.71	100.00	100.00	99.20	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	EML3	chr11	-	chr11:62373453-62374429	chr11:62373453-62373534;chr11:62373687-62374429		chr11:62373535-62373686			100.00	100.00	92.11	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.59	91.67	95.45	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	DNAJC5	chr20	+	chr20:62562376-62562817	chr20:62562376-62562461;chr20:62562536-62562817		chr20:62562462-62562535			6.25	8.00	4.85	6.67	6.67	15.62	19.23	15.65	15.58	13.83	13.50	15.00	16.15	18.18	16.05	19.08	12.79	16.28	16.67	8.64	12.50	7.41	8.11	7.50	10.00	13.92	7.58	14.81	11.63	18.75	8.33	7.81	11.11	12.07	6.38	9.72	13.63	11.28	-2.35	0.536347	0.809056
K	intron_retention		chr7	+	chr7:4827408-4827784				chr7:4827407-4827408;chr7:4827784-4827785		6.25	0.00	7.27	7.41	2.56	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	8.00	NA	0.00	7.14	6.90	0.00	7.14	8.11	0.00	4.48	3.57	3.45	2.86	0.00	10.20	7.14	0.00	6.52	5.88	8.06	0.00	5.37	5.37	0.085581	1.000000
K	jcn_only_AD	FLOT2,ORMDL3	chr17	-	chr17:38079517-38080330	chr17:38079517-38080282		chr17:38080283-38080330	chr17:38080330-38080331		100.00	100.00	94.74	NA	NA	NA	96.97	100.00	97.30	NA	100.00	NA	96.77	100.00	98.08	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	100.00	100.00	93.75	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	98.48	100.00	1.52	0.182015	0.657607
N	jcn_only_AD	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365065-62366056;chr20:62365157-62366056	chr20:62365092-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		88.68	72.92	84.78	86.36	89.74	90.77	92.86	88.57	86.49	86.79	88.89	89.66	85.00	90.91	91.18	85.11	93.55	88.46	96.30	93.94	92.50	92.00	90.91	94.12	92.86	93.55	92.31	90.70	92.59	90.16	93.33	91.49	90.62	91.43	82.76	91.89	91.74	92.12	0.38	0.427297	0.687950
K	cassette	MPPE1	chr18	-	chr18:11884627-11885674	chr18:11884627-11884877;chr18:11885043-11885674		chr18:11884878-11885042			9.68	14.49	16.33	0.00	10.42	NA	21.05	NA	20.00	NA	26.67	NA	26.32	NA	25.00	NA	20.00	NA	14.29	7.14	11.54	0.00	5.13	0.00	0.00	9.09	12.50	NA	11.11	NA	5.26	17.02	8.16	5.56	8.33	4.76	14.39	8.12	-6.28	0.164661	0.709176
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160101320-160103505;chr6:160100331-160103505;chr6:160016237-160103505;chr6:160100398-160103505;chr6:160100367-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160101368-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160100377-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		3.19	7.14	1.28	5.83	5.00	0.81	NA	3.12	2.38	1.90	0.00	3.82	NA	1.92	1.16	3.26	0.00	1.89	9.09	3.19	5.13	3.75	2.27	4.71	9.09	1.87	2.26	4.26	3.85	5.06	4.76	1.61	4.76	2.02	2.02	2.45	8.12	3.16	-4.96	0.014949	0.497484
K	intron_retention	CDK4	chr12	-	chr12:58143101-58143236				chr12:58143100-58143101;chr12:58143236-58143237		10.53	1.90	10.00	1.72	3.39	4.35	0.00	NA	0.00	0.00	1.37	4.17	0.96	0.00	0.00	0.00	1.52	0.00	0.00	11.11	4.00	0.00	0.00	0.00	0.00	0.00	14.29	3.64	2.99	3.45	15.00	13.64	0.00	1.43	3.17	2.08	0.00	10.53	10.53	0.309071	1.000000
N	jcn_only_AA	MAP3K11	chr11	-	chr11:65375920-65380488	chr11:65376020-65380488		chr11:65375920-65376019	chr11:65375919-65375920		5.26	0.00	2.86	NA	0.00	NA	0.00	3.80	3.03	0.00	3.75	0.00	3.23	3.75	5.63	0.00	1.10	0.00	0.00	4.08	0.00	0.00	1.43	0.00	0.00	2.70	1.92	2.94	0.00	6.25	0.00	2.22	0.00	4.26	1.52	3.23	0.00	3.77	3.77	0.014727	0.535072
K	intron_retention	MRPL52	chr14	+	chr14:23299150-23299258				chr14:23299149-23299150;chr14:23299258-23299259		19.15	13.95	12.77	30.30	19.44	25.81	4.00	NA	9.52	7.69	0.00	7.69	7.69	11.11	17.39	14.29	1.79	0.00	14.55	27.03	14.86	43.48	30.00	25.00	7.69	40.00	22.50	33.33	22.22	18.18	16.67	14.29	18.75	18.18	32.14	28.57	10.82	19.15	8.33	0.219842	1.000000
K	intron_retention	PSMD2	chr3	+	chr3:184021863-184022091				chr3:184021862-184021863;chr3:184022091-184022092		7.69	0.00	11.29	0.00	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	1.79	0.00	0.00	0.00	NA	5.81	0.00	8.77	8.16	9.09	NA	5.10	7.34	4.26	7.69	9.76	9.23	9.00	0.00	5.83	7.96	6.98	0.00	5.46	5.46	0.075360	1.000000
N	jcn_only_AD	MAPK13	chr6	+	chr6:36095733-36099047;chr6:36098935-36099047	chr6:36098479-36099047		chr6:36095733-36098478;chr6:36098479-36098934	chr6:36095732-36095733;chr6:36098478-36098479		76.09	73.33	87.18	86.96	91.18	NA	97.41	96.08	100.00	99.28	97.78	98.63	96.08	100.00	95.65	97.89	98.64	100.00	NA	85.71	87.50	85.11	89.83	86.67	NA	71.79	78.05	88.33	82.09	87.18	88.89	73.33	90.91	86.08	85.14	86.36	93.50	87.30	-6.20	0.687160	0.841011
N	alternative_acceptor	TRPM2	chr21	+	chr21:45810909-45811154;chr21:45810909-45811315	chr21:45810909-45811161		chr21:45811155-45811161;chr21:45811162-45811315	chr21:45811161-45811162;chr21:45811315-45811316		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	0.00	0.00	13.33	NA	0.00	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
N	alternative_acceptor	NPAS1,PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50363242;chr19:50361911-50363350	chr19:50361911-50362345		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		11.32	3.73	13.04	2.04	1.75	1.09	2.63	6.25	6.25	3.03	2.63	0.00	2.08	4.76	8.33	4.00	2.33	0.00	2.74	6.45	2.15	13.04	10.34	13.04	2.66	12.00	10.14	12.50	8.33	3.23	9.09	9.62	2.00	13.51	12.77	13.89	2.65	7.77	5.12	0.004710	0.405868
K	intron_retention		chr11	+	chr11:64031268-64031492				chr11:64031267-64031268;chr11:64031492-64031493		0.00	4.00	5.66	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.35	0.00	0.00	0.00	NA	0.00	0.00	2.44	0.00	0.00	NA	6.67	0.00	0.00	6.90	3.45	0.00	0.00	0.00	0.00	0.841574	1.000000
K	intron_retention	TMEM176A	chr7	+	chr7:150497917-150498623				chr7:150497916-150497917;chr7:150498623-150498624		7.46	NA	10.94	NA	NA	NA	26.76	26.90	30.00	16.00	15.00	11.36	7.96	13.20	15.23	10.34	5.13	4.00	4.17	7.36	18.10	7.32	12.42	6.52	10.61	12.89	12.59	11.46	13.01	14.29	6.52	8.24	4.26	7.69	6.38	10.17	7.96	10.18	2.22	0.919090	1.000000
N	cassette	COL23A1	chr5	-	chr5:177683399-177684152;chr5:177683399-177684523	chr5:177683399-177683866;chr5:177683930-177684523,chr5:177683930-177684152		chr5:177683867-177683929			46.15	57.14	NA	NA	60.00	NA	88.57	100.00	NA	88.89	83.72	82.76	82.28	NA	NA	86.67	82.72	81.25	63.64	63.64	NA	66.67	47.73	53.85	42.86	68.42	NA	68.75	56.67	50.00	NA	NA	56.25	68.75	66.67	76.67	60.39	66.03	5.64	0.750818	0.920072
K	cassette	RBCK1	chr20	+	chr20:389424-398169;chr20:389424-391055	chr20:389424-390473;chr20:390670-398169,chr20:390670-391055		chr20:390474-390669			79.49	100.00	77.27	NA	75.00	65.85	88.00	91.80	83.05	66.67	72.00	66.67	95.45	92.31	95.74	66.67	65.38	78.33	NA	86.05	85.71	NA	100.00	88.10	100.00	97.87	76.47	86.96	87.50	80.68	90.32	88.00	NA	84.62	100.00	86.54	97.72	91.06	-6.66	0.146444	0.709176
K	alternative_acceptor	C17orf62	chr17	-	chr17:80403757-80404498;chr17:80403837-80404498	chr17:80403833-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		3.90	3.12	6.02	NA	11.76	NA	2.50	5.48	5.43	8.33	3.85	5.88	6.12	3.39	5.15	0.00	4.17	0.00	8.33	8.00	3.70	NA	10.71	6.25	0.00	4.00	2.63	21.43	9.09	8.33	7.69	8.93	6.25	7.69	4.17	4.76	4.62	4.74	0.12	0.510446	0.800006
N	alternative_acceptor	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837179	chr12:53836518-53837270		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		5.41	0.00	4.03	3.57	2.67	4.55	3.66	9.22	5.00	2.33	2.61	3.75	3.66	6.78	2.52	4.05	1.79	4.05	0.00	2.75	4.49	5.41	2.41	5.88	0.00	4.20	4.59	2.08	3.49	3.17	3.48	3.57	2.44	4.69	2.60	2.56	1.22	4.80	3.58	0.014554	0.497484
K	alternative_donor	UQCRQ	chr5	+	chr5:132202380-132202560	chr5:132202384-132202560		chr5:132202380-132202383	chr5:132202379-132202380		4.17	2.08	2.63	3.41	3.33	4.24	3.51	0.00	0.00	2.54	4.44	2.46	6.35	5.00	8.70	5.06	3.80	4.55	4.35	2.04	4.47	1.56	4.52	4.62	3.55	4.35	3.70	5.97	6.87	6.03	6.78	4.62	4.56	2.99	3.53	3.19	3.95	4.26	0.31	0.768905	0.911362
N	cassette	CTDP1	chr18	+	chr18:77478017-77513651;chr18:77489070-77513651	chr18:77489070-77496354,chr18:77478017-77496354;chr18:77496522-77513651		chr18:77496355-77496521			91.18	94.12	86.49	88.24	85.29	100.00	85.71	87.50	92.31	91.89	92.00	86.36	85.71	89.47	91.30	83.33	88.57	80.00	75.00	85.19	92.00	90.48	88.37	81.25	100.00	84.00	90.32	100.00	88.46	82.61	75.68	85.71	80.00	90.91	91.67	90.32	85.71	86.34	0.64	0.780170	0.934744
N	jcn_only_AA	KMO	chr1	+	chr1:241750039-241752049;chr1:241750039-241750202;chr1:241750039-241751078	chr1:241750039-241752074		chr1:241750203-241751078;chr1:241751079-241752049;chr1:241752050-241752074	chr1:241751078-241751079;chr1:241752049-241752050;chr1:241752074-241752075		2.63	0.00	0.00	3.55	0.00	2.76	0.00	1.82	0.00	0.00	3.33	0.00	0.00	1.79	0.00	0.49	0.00	0.00	6.25	3.08	7.14	2.49	2.17	1.46	NA	0.95	0.00	0.00	0.00	0.00	3.85	4.76	0.00	1.33	0.00	1.42	0.00	2.23	2.23	0.441962	0.706378
N	cassette	UBE2B	chr5	+	chr5:133712386-133724015;chr5:133710155-133724015;chr5:133712386-133725915;chr5:133710155-133725915	chr5:133712386-133716409,chr5:133710155-133716409;chr5:133716500-133725915,chr5:133716500-133724015		chr5:133716410-133716499			90.24	100.00	96.94	100.00	100.00	100.00	94.23	100.00	95.08	98.80	96.92	98.57	100.00	97.62	96.92	97.98	100.00	97.30	90.00	94.38	100.00	98.55	98.48	100.00	NA	97.75	96.97	97.67	98.15	100.00	91.40	90.83	100.00	98.97	100.00	96.43	100.00	96.00	-4.00	0.549775	0.819307
K	intron_retention	TAPBP	chr6	-	chr6:33272416-33272765				chr6:33272415-33272416;chr6:33272765-33272766		4.08	5.36	6.71	NA	0.00	4.76	0.00	0.78	0.51	1.47	0.00	0.82	0.88	0.40	1.82	0.00	0.00	0.00	9.09	3.70	1.64	5.41	8.47	13.33	8.82	5.10	4.31	3.23	2.86	7.27	4.23	4.35	0.00	14.55	8.47	12.14	3.12	3.89	0.77	0.304993	1.000000
N	alternative_donor	C6orf48	chr6	+	chr6:31790079-31803187;chr6:31785337-31803187;chr6:31802978-31803187;chr6:31802753-31803187	chr6:31802835-31803187		chr6:31785337-31790078;chr6:31790079-31802752;chr6:31802753-31802834;chr6:31802835-31802977	chr6:31785336-31785337;chr6:31790078-31790079;chr6:31802752-31802753;chr6:31802834-31802835		2.27	9.09	0.00	12.50	5.88	2.38	9.09	6.45	0.00	9.09	NA	10.00	0.00	0.00	0.00	5.26	NA	11.76	8.33	2.94	9.52	14.29	11.11	11.76	10.53	2.94	5.26	8.33	7.69	14.29	15.79	7.14	4.55	5.00	14.29	19.44	8.71	2.94	-5.77	0.523681	0.772364
K	intron_retention	ITPA	chr20	+	chr20:3199279-3202486				chr20:3199278-3199279;chr20:3202486-3202487		0.00	4.03	4.35	4.44	4.55	4.88	1.61	7.69	0.00	0.00	0.00	0.00	0.00	0.00	2.70	1.43	0.00	0.00	1.82	0.00	2.78	4.76	2.17	3.33	2.47	0.00	4.35	5.00	1.67	2.56	0.00	0.00	2.04	0.00	4.23	1.75	1.93	0.00	-1.93	0.373287	1.000000
K	intron_retention		chr19	+	chr19:50880906-50880989				chr19:50880905-50880906;chr19:50880989-50880990		3.64	0.00	3.28	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.32	4.00	0.00	1.92	0.00	0.00	2.17	1.75	0.00	0.00	0.00	21.88	11.54	NA	0.00	0.00	2.04	0.00	2.91	2.91	0.255909	1.000000
N	alternative_acceptor	PPP1R12C	chr19	-	chr19:55606113-55606658	chr19:55606167-55606658		chr19:55606113-55606166	chr19:55606112-55606113		89.86	100.00	93.85	100.00	97.73	NA	100.00	100.00	96.15	100.00	100.00	100.00	100.00	95.65	100.00	93.75	96.23	100.00	94.44	92.00	94.74	87.50	95.65	100.00	100.00	100.00	93.65	100.00	100.00	100.00	89.74	86.89	91.18	93.33	96.23	97.56	100.00	93.83	-6.17	0.248709	0.706085
N	cassette	FIS1	chr7	-	chr7:100884188-100888240;chr7:100884188-100895175;chr7:100884188-100895408	chr7:100884188-100887287;chr7:100887421-100895175,chr7:100887421-100888240,chr7:100887421-100895408		chr7:100887288-100887420			59.38	91.67	70.00	92.31	90.85	89.47	93.89	70.83	66.67	95.24	92.39	92.78	93.38	60.00	71.21	88.55	91.67	96.05	91.62	61.76	73.68	86.79	89.13	87.04	90.08	52.17	62.79	88.89	91.67	75.81	61.36	64.15	86.84	86.08	91.67	88.35	91.65	60.68	-30.97	0.000011	0.019864
K	intron_retention	CLK3	chr15	+	chr15:74921374-74922047				chr15:74921373-74921374;chr15:74922047-74922048		25.00	15.38	28.69	16.24	15.24	11.41	3.23	12.82	13.51	17.95	11.11	12.50	14.29	23.33	20.59	11.76	16.67	9.09	13.61	16.98	17.14	24.64	15.86	14.08	10.06	16.84	20.00	6.56	17.72	7.89	20.92	23.57	12.82	25.58	18.39	18.40	13.21	18.95	5.74	0.206562	1.000000
N	alternative_acceptor	SFPQ	chr1	-	chr1:35643638-35646735	chr1:35644356-35646735		chr1:35643638-35644355	chr1:35643637-35643638		95.00	93.65	93.62	82.61	89.77	84.09	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	84.62	93.10	92.86	93.85	88.46	94.52	65.00	89.47	90.48	82.86	88.57	93.75	97.06	94.74	78.26	90.27	89.53	90.57	81.44	94.05	12.61	0.111720	0.605363
N	cassette	AATF	chr17	+	chr17:35311208-35345817;chr17:35306517-35345817	chr17:35306517-35343915,chr17:35311208-35343915;chr17:35344031-35345817		chr17:35343916-35344030			100.00	91.67	98.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr20	-	chr20:3682289-3683843				chr20:3682288-3682289;chr20:3683843-3683844		38.33	76.00	17.65	75.00	NA	100.00	9.58	12.05	4.96	14.29	10.00	17.05	7.91	8.92	6.05	16.36	7.34	11.25	90.00	23.46	78.57	36.36	20.83	26.76	60.98	15.24	18.75	53.85	26.09	52.73	54.76	28.89	100.00	52.38	27.78	43.48	68.49	19.35	-49.14	0.740259	1.000000
K	jcn_only_AD	UQCRC1	chr3	-	chr3:48646736-48646984	chr3:48646736-48646929		chr3:48646930-48646984	chr3:48646984-48646985		0.00	0.00	3.41	0.00	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.12	2.86	0.00	0.00	3.57	0.00	0.00	0.00	2.78	3.03	5.00	2.63	0.00	2.56	0.00	0.00	0.00	0.708324	0.847790
N	alternative_acceptor	CDC26	chr9	-	chr9:116034801-116035608	chr9:116034829-116035608		chr9:116034801-116034828	chr9:116034800-116034801		100.00	100.00	96.23	100.00	96.30	100.00	100.00	91.49	100.00	89.66	100.00	100.00	100.00	90.70	100.00	100.00	94.29	100.00	94.59	95.83	96.61	100.00	94.44	100.00	100.00	94.83	96.08	97.06	93.48	100.00	96.49	100.00	100.00	100.00	94.59	95.77	100.00	95.33	-4.67	0.033566	0.560254
K	cassette	IFITM2	chr11	+	chr11:308439-309012	chr11:308439-308754;chr11:308890-309012		chr11:308755-308889			1.04	0.00	0.00	0.00	0.00	9.38	0.00	4.46	2.22	NA	NA	6.67	0.00	0.97	1.14	0.91	0.00	2.68	0.00	1.64	0.00	0.00	0.00	1.75	0.00	4.17	2.70	7.14	0.00	12.12	2.04	0.00	0.00	4.76	0.00	4.92	0.00	1.84	1.84	0.012926	0.352147
N	jcn_only_AA	NISCH,SEC62	chr3	+	chr3:169701042-169703592;chr3:169701042-169706036	chr3:169701042-169702864		chr3:169702865-169703592;chr3:169703593-169706036	chr3:169703592-169703593;chr3:169706036-169706037		0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_acceptor	PRELID1	chr5	+	chr5:176731852-176732915	chr5:176731852-176732871		chr5:176732872-176732915	chr5:176732915-176732916		96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	99.40	100.00	100.00	100.00	100.00	100.00	97.25	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	WBP1	chr2	+	chr2:74685799-74686769				chr2:74685798-74685799;chr2:74686769-74686770		18.75	13.04	18.75	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	4.00	0.00	0.00	NA	0.00	14.29	15.38	10.00	6.25	10.00	21.43	14.29	19.23	5.88	6.06	5.88	14.29	23.33	0.00	13.33	25.00	22.73	1.39	14.29	12.90	0.850196	1.000000
N	alternative_donor	PIK3R5	chr17	-	chr17:8785199-8785357;chr17:8785199-8788023	chr17:8785199-8787768		chr17:8785358-8787768;chr17:8787769-8788023	chr17:8787768-8787769;chr17:8788023-8788024		2.94	11.76	3.81	NA	0.00	NA	0.76	0.72	0.00	0.72	0.77	0.00	0.54	0.54	0.89	1.18	0.72	0.85	NA	0.76	NA	2.22	1.57	1.93	6.25	1.32	3.08	3.60	1.85	0.00	1.28	0.00	NA	4.17	4.41	1.98	3.50	1.02	-2.48	0.273153	0.645608
N	cassette	PEX16	chr11	-	chr11:45931864-45935369	chr11:45931864-45932448;chr11:45932514-45935369		chr11:45932449-45932513			100.00	92.16	100.00	100.00	95.65	96.70	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.55	92.31	94.44	100.00	100.00	100.00	100.00	100.00	94.87	100.00	94.83	100.00	100.00	100.00	97.41	100.00	2.59	0.215702	0.709176
N	cassette	AKR1A1	chr1	+	chr1:46018236-46032240;chr1:46016828-46032240	chr1:46018236-46027460,chr1:46016828-46027460;chr1:46027551-46032240		chr1:46027461-46027550			100.00	96.77	97.14	94.29	95.18	100.00	98.19	98.02	100.00	98.04	97.94	98.40	99.15	97.87	100.00	97.18	97.73	98.43	98.44	97.22	97.26	97.70	98.17	100.00	100.00	100.00	100.00	97.44	98.00	100.00	100.00	100.00	100.00	100.00	97.10	98.19	98.80	99.01	0.21	0.900498	0.969496
K	alternative_first_exon	NFE2L1	chr17	+	chr17:46126523-46127968,chr17:46126210-46127968,chr17:46126193-46127968,chr17:46126240-46127968;chr17:46125825-46127968	chr17:46126227-46127968	chr17:46125721-46125824	chr17:46126135-46126226			65.71	50.00	45.90	NA	NA	NA	50.75	63.33	65.95	34.29	42.37	69.57	53.33	64.86	58.39	40.00	39.06	52.63	NA	66.67	NA	NA	44.44	NA	46.67	72.58	47.37	NA	41.67	NA	64.71	58.33	NA	63.16	57.14	73.91	50.38	65.28	14.91	0.000048	0.004820
K	intron_retention	GPS1	chr17	+	chr17:80014427-80014504				chr17:80014426-80014427;chr17:80014504-80014505		5.26	3.33	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	5.88	7.32	6.67	0.00	2.56	0.00	0.00	0.00	0.00	0.654425	1.000000
N	alternative_donor	ARSA	chr22	-	chr22:51065835-51066418;chr22:51065835-51066373	chr22:51065835-51065983		chr22:51065984-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		90.91	95.35	86.54	100.00	100.00	NA	95.95	97.73	96.25	94.00	91.18	96.61	96.55	96.05	95.59	100.00	100.00	100.00	100.00	89.47	100.00	100.00	91.23	94.29	100.00	93.42	93.75	100.00	95.74	100.00	93.94	86.96	84.21	96.67	97.22	100.00	96.25	93.68	-2.57	0.532574	0.776719
K	intron_retention	TSC2	chr16	+	chr16:2138141-2138227				chr16:2138140-2138141;chr16:2138227-2138228		0.00	5.81	0.00	5.88	0.00	12.12	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	2.56	0.00	0.00	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.858499	1.000000
N	alternative_acceptor	TNFRSF14	chr1	+	chr1:2489908-2491241;chr1:2489908-2491347;chr1:2489908-2490126;chr1:2489908-2490319	chr1:2489908-2491261		chr1:2490127-2490319;chr1:2490320-2491241;chr1:2491242-2491261;chr1:2491262-2491347	chr1:2490319-2490320;chr1:2491241-2491242;chr1:2491261-2491262;chr1:2491347-2491348		71.79	81.20	70.00	78.75	83.33	86.96	90.24	93.62	95.18	89.87	87.21	88.57	82.22	91.23	88.10	85.71	85.56	88.24	82.67	70.49	86.76	69.07	80.19	61.86	80.72	77.42	76.67	74.59	80.83	78.00	78.87	77.66	85.29	59.17	66.36	60.43	82.44	78.15	-4.30	0.483712	0.782166
K	intron_retention		chr11	+	chr11:60157070-60161259				chr11:60157069-60157070;chr11:60161259-60161260		61.54	79.17	76.92	58.33	65.52	44.44	27.27	35.48	NA	5.26	17.65	9.09	33.33	47.37	NA	27.27	19.51	NA	82.76	57.69	NA	30.00	51.72	18.18	63.33	63.64	NA	50.00	58.06	NA	58.33	NA	62.50	60.87	84.00	NA	62.91	58.01	-4.91	0.751901	1.000000
N	cassette	ASPH	chr8	-	chr8:62531579-62550518;chr8:62538840-62550505;chr8:62531579-62550505	chr8:62538840-62546241,chr8:62531579-62546241;chr8:62546287-62550505,chr8:62546287-62550518		chr8:62546242-62546286			100.00	100.00	94.92	NA	92.86	NA	93.41	95.00	89.74	96.39	95.71	94.44	96.79	93.02	95.56	95.34	96.58	100.00	100.00	92.31	100.00	94.34	100.00	100.00	NA	94.29	94.05	97.37	100.00	NA	100.00	100.00	NA	95.71	97.06	100.00	98.40	94.65	-3.75	0.424981	0.732911
K	jcn_only_AA	NOSIP	chr19	-	chr19:50059994-50060131;chr19:50059911-50060131	chr19:50059915-50060131		chr19:50059911-50059914;chr19:50059915-50059993	chr19:50059910-50059911;chr19:50059914-50059915		2.96	0.00	0.00	0.00	2.13	2.13	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.93	0.00	2.00	0.00	2.89	2.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.724479	0.877626
K	intron_retention		chr22	-	chr22:51018260-51018402				chr22:51018259-51018260;chr22:51018402-51018403		19.18	26.00	17.07	18.75	14.29	17.19	0.00	0.00	0.00	0.00	0.00	0.00	3.03	10.81	8.06	0.00	10.00	0.00	10.23	12.07	10.84	20.83	16.67	4.17	10.98	9.78	18.37	22.50	13.64	11.29	18.09	12.77	8.25	15.38	17.65	19.74	9.24	11.44	2.20	0.885814	1.000000
K	cassette	LUC7L3	chr17	+	chr17:48824064-48827861	chr17:48824064-48826584;chr17:48826706-48827861		chr17:48826585-48826705			1.28	1.30	2.73	3.57	1.59	0.00	1.23	0.00	0.00	1.09	0.00	3.23	1.22	2.78	0.00	2.15	1.67	3.33	0.97	2.67	0.97	5.56	5.33	5.26	0.97	0.00	3.33	3.28	1.23	1.61	3.12	2.56	1.45	1.59	4.00	5.77	1.23	1.98	0.75	0.473242	0.770157
K	cassette	APOPT1	chr14	+	chr14:104040508-104053610	chr14:104040508-104047905;chr14:104047994-104053610		chr14:104047906-104047993			0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.03	4.35	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	jcn_only_AA	NDUFAF1	chr15	-	chr15:41679779-41680645	chr15:41679792-41680645		chr15:41679779-41679791	chr15:41679778-41679779		80.49	86.49	85.71	88.46	87.93	85.42	85.29	82.61	84.62	100.00	85.71	77.27	88.00	81.82	75.00	100.00	71.88	75.00	85.00	86.36	84.54	81.82	81.48	88.00	88.24	90.48	89.47	85.19	95.24	92.11	80.00	88.14	85.39	86.11	91.49	87.88	85.94	82.22	-3.72	0.162154	0.663989
N	alternative_acceptor	RNPEPL1	chr2	+	chr2:241515028-241516016;chr2:241515028-241515951	chr2:241515028-241515984		chr2:241515952-241515984;chr2:241515985-241516016	chr2:241515984-241515985;chr2:241516016-241516017		9.09	10.20	17.65	NA	7.69	NA	8.00	11.76	6.25	8.33	11.11	NA	9.84	10.00	0.00	7.69	9.30	NA	7.69	0.00	7.14	NA	19.05	NA	6.67	12.50	0.00	NA	8.57	NA	21.43	0.00	9.52	6.25	6.67	11.76	8.76	10.88	2.12	0.486114	0.785046
N	jcn_only_AD	TBRG4	chr7	-	chr7:45141214-45141440;chr7:45141214-45141423	chr7:45141214-45141451		chr7:45141424-45141440;chr7:45141441-45141451	chr7:45141440-45141441;chr7:45141451-45141452		0.00	0.00	0.00	6.00	5.45	6.35	5.13	0.00	0.00	4.55	0.00	0.00	0.00	0.00	5.36	5.88	5.56	0.00	12.00	0.00	6.78	6.82	7.55	8.33	13.89	0.00	11.54	5.26	4.35	9.52	8.00	12.50	0.00	3.33	8.00	16.67	2.56	0.00	-2.56	0.228180	0.657607
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299150-23299258;chr14:23299158-23299258	chr14:23299154-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.44	0.00	0.00	0.00	10.00	7.61	0.00	2.27	0.00	0.00	0.00	7.84	5.00	6.90	0.00	0.00	0.00	10.00	7.69	0.00	0.00	0.00	0.00	0.00	0.583289	0.791676
N	alternative_donor	PCMT1	chr6	+	chr6:150123506-150131751;chr6:150131260-150131751;chr6:150123553-150131751	chr6:150123561-150131751		chr6:150123506-150123552;chr6:150123553-150123560;chr6:150123561-150131259	chr6:150123505-150123506;chr6:150123552-150123553;chr6:150123560-150123561		1.60	6.15	1.16	7.69	1.55	5.74	4.55	5.75	4.65	6.38	5.00	8.51	4.81	7.69	4.76	12.99	3.39	6.38	2.88	0.85	7.95	0.83	1.22	0.93	11.24	3.00	1.54	10.53	4.90	8.82	1.71	1.01	6.94	3.70	3.60	4.40	5.48	2.35	-3.13	0.130459	0.543255
K	cassette	NUP214	chr9	+	chr9:134106157-134108840	chr9:134106157-134107670;chr9:134107696-134108840		chr9:134107671-134107695			100.00	100.00	97.22	100.00	98.26	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	99.24	97.62	98.44	100.00	100.00	80.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	96.43	100.00	100.00	100.00	100.00	0.00	0.241881	0.709176
K	intron_retention	DNAJC4	chr11	+	chr11:63999437-63999901				chr11:63999436-63999437;chr11:63999901-63999902		5.41	0.00	2.04	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	3.23	0.00	0.00	9.09	0.00	0.00	2.50	0.00	0.00	4.35	2.27	0.00	2.38	0.00	0.00	3.45	2.70	4.55	3.12	0.00	0.00	2.17	2.17	0.332011	1.000000
N	alternative_acceptor	PCM1	chr8	+	chr8:17843597-17847367	chr8:17843597-17846460		chr8:17846461-17847367	chr8:17847367-17847368		18.18	55.56	11.76	NA	50.00	NA	5.13	9.09	3.57	7.69	3.57	NA	3.12	7.69	4.35	7.14	4.00	NA	NA	10.53	50.00	8.33	17.24	10.00	NA	NA	14.29	10.00	17.24	NA	33.33	20.00	81.82	8.82	5.71	11.11	30.35	10.53	-19.82	0.369850	0.709013
K	cassette	VDAC3	chr8	+	chr8:42252652-42256229	chr8:42252652-42254173;chr8:42254199-42256229		chr8:42254174-42254198			6.67	18.52	12.33	NA	16.00	NA	2.11	0.00	1.85	3.80	4.42	2.13	1.28	0.00	0.00	2.38	2.68	0.00	NA	8.82	3.57	19.15	18.35	11.36	NA	0.00	6.25	6.25	5.19	3.57	7.69	11.76	23.08	9.30	17.02	11.39	10.31	3.33	-6.98	0.283429	0.709176
K	intron_retention	C20orf24	chr20	+	chr20:35236222-35238003				chr20:35236221-35236222;chr20:35238003-35238004		3.01	0.00	5.42	1.82	1.45	0.00	0.00	0.77	0.73	0.85	0.00	0.00	0.00	0.69	1.16	0.40	0.00	0.00	1.06	2.17	1.28	3.06	0.46	4.35	3.57	3.38	2.08	2.67	0.62	2.33	4.83	3.40	0.65	3.45	2.45	4.87	0.33	2.59	2.26	0.606956	1.000000
K	intron_retention	MARCKS	chr6	+	chr6:114182173-114182173				chr6:114182172-114182173;chr6:114182173-114182174		23.08	32.26	27.07	14.29	14.29	14.29	24.62	20.00	17.24	9.09	7.53	7.60	22.06	18.63	20.11	24.69	5.48	5.88	NA	38.98	34.78	16.98	13.64	11.21	NA	20.69	17.60	8.33	8.57	12.41	48.15	24.44	21.43	6.06	14.14	7.19	23.34	21.88	-1.46	0.861430	1.000000
K	cassette	NUB1	chr7	+	chr7:151065974-151072933	chr7:151065974-151071182;chr7:151071288-151072933		chr7:151071183-151071287			78.57	75.00	70.89	NA	NA	91.89	96.77	98.17	97.78	97.30	100.00	100.00	100.00	98.36	98.79	97.73	100.00	100.00	NA	82.00	75.93	100.00	85.00	93.75	NA	89.54	77.27	100.00	100.00	96.97	70.43	68.28	54.55	93.75	66.67	93.57	85.88	85.77	-0.11	0.709709	0.896124
K	alternative_last_exon	TNS1	chr2	-	chr2:218744236-218745620;chr2:218713811-218745620	chr2:218724425-218745620	chr2:218712233-218713810	chr2:218723952-218724424			0.00	11.76	0.00	NA	NA	33.33	0.90	0.00	0.00	3.80	0.60	0.00	1.08	1.54	0.00	5.71	1.17	2.02	NA	5.88	NA	10.00	6.90	3.85	9.09	0.00	0.00	NA	9.09	26.67	NA	NA	NA	7.69	0.00	2.38	5.08	0.00	-5.08	0.232093	0.449786
K	intron_retention		chr11	-	chr11:93463614-93463842				chr11:93463613-93463614;chr11:93463842-93463843		5.13	9.84	12.73	6.84	8.23	6.40	0.00	NA	7.14	6.90	6.45	0.00	10.00	NA	13.33	9.52	5.00	0.00	5.56	11.76	11.51	6.67	9.45	13.33	12.50	14.81	16.28	15.25	15.05	13.89	6.73	9.02	5.08	7.62	9.20	8.13	7.70	9.25	1.55	0.847877	1.000000
K	intron_retention	MAN2C1	chr15	-	chr15:75651767-75651960				chr15:75651766-75651767;chr15:75651960-75651961		27.27	30.43	35.48	31.25	40.54	NA	2.50	NA	16.67	0.00	6.98	0.00	6.45	9.09	21.74	11.11	4.88	0.00	35.71	31.58	11.76	33.33	43.18	17.39	56.67	NA	24.00	27.78	32.14	16.67	30.77	31.03	43.75	37.21	37.50	25.93	33.07	29.02	-4.05	0.965417	1.000000
K	cassette	CD59	chr11	-	chr11:33744010-33757927;chr11:33744010-33755040	chr11:33744010-33752969;chr11:33753015-33755040,chr11:33753015-33757927		chr11:33752970-33753014			24.67	30.97	27.09	33.85	20.65	32.43	32.08	35.77	30.63	25.24	23.55	25.00	25.97	32.49	29.14	31.96	22.79	25.79	21.84	27.44	22.09	31.71	28.34	30.23	32.00	29.50	29.82	36.79	31.00	30.41	23.76	19.87	23.31	28.21	24.48	26.21	28.47	28.47	0.00	0.649904	0.870542
N	jcn_only_AD	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095537;chr10:74094376-74095543	chr10:74094376-74095591		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		18.52	30.23	33.33	31.71	22.86	18.10	25.00	20.59	30.23	13.33	32.65	14.71	24.39	15.38	18.75	13.64	19.57	16.00	28.05	18.42	15.25	24.00	28.89	19.23	13.33	21.21	24.49	35.48	28.12	10.20	25.81	23.08	38.36	13.89	24.49	26.00	26.52	19.55	-6.97	0.115895	0.646283
K	cassette	PTK2B	chr8	+	chr8:27301789-27308265	chr8:27301789-27303310;chr8:27303437-27308265		chr8:27303311-27303436			45.52	9.30	29.13	NA	22.22	NA	16.67	67.86	33.77	23.81	17.33	48.21	22.97	70.00	32.94	22.22	14.67	46.22	NA	60.24	25.00	35.71	10.81	36.11	0.00	52.63	31.33	29.41	20.00	42.86	48.08	27.69	NA	23.53	23.33	47.44	12.99	56.44	43.45	0.000254	0.050057
K	intron_retention		chr16	-	chr16:1509189-1510418				chr16:1509188-1509189;chr16:1510418-1510419		20.45	18.18	17.24	NA	7.14	NA	0.00	0.00	0.00	0.00	0.96	0.00	2.13	0.00	0.00	2.27	1.09	0.00	NA	17.24	6.67	18.75	11.11	16.67	21.62	10.71	12.96	14.29	5.26	NA	11.76	10.87	NA	7.32	8.93	14.81	10.15	11.23	1.08	0.845400	1.000000
K	intron_retention		chr11	+	chr11:47603766-47603900				chr11:47603765-47603766;chr11:47603900-47603901		1.92	0.33	2.25	2.00	3.94	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	0.00	0.00	1.64	0.00	1.37	3.57	2.82	7.14	2.68	0.00	1.91	0.00	1.06	0.00	1.01	0.00	1.89	2.73	2.67	2.22	2.22	5.00	1.04	0.94	-0.10	0.443406	1.000000
K	alternative_acceptor	SDHA	chr5	+	chr5:254622-256465	chr5:254622-256448		chr5:256449-256465	chr5:256465-256466		89.83	97.20	87.04	95.92	93.46	95.38	100.00	100.00	93.10	100.00	98.36	100.00	100.00	100.00	97.37	100.00	100.00	100.00	94.74	93.88	91.58	94.44	94.25	100.00	92.55	93.62	88.89	100.00	92.21	98.04	90.62	93.94	94.74	95.16	95.16	94.52	95.97	93.75	-2.22	0.415189	0.729683
N	alternative_donor	TCF25	chr16	+	chr16:89976760-89976998;chr16:89975516-89976998;chr16:89975492-89976998;chr16:89976765-89976998	chr16:89976334-89976998		chr16:89975492-89975515;chr16:89975516-89976333;chr16:89976334-89976759;chr16:89976760-89976764	chr16:89975491-89975492;chr16:89975515-89975516;chr16:89976333-89976334;chr16:89976759-89976760		14.29	0.00	13.33	0.00	0.00	4.35	NA	NA	NA	NA	NA	NA	NA	NA	10.00	0.00	NA	NA	0.00	9.09	5.00	NA	7.14	NA	0.00	0.00	0.00	NA	6.67	7.14	9.09	0.00	5.88	0.00	9.09	4.35	0.00	9.09	9.09	0.109145	0.520337
N	alternative_acceptor	AKAP8L	chr19	-	chr19:15510222-15511105	chr19:15510703-15511105		chr19:15510222-15510702	chr19:15510221-15510222		9.80	2.25	6.67	4.17	1.79	4.00	0.00	2.70	2.56	8.70	3.70	27.27	6.67	2.38	6.90	10.34	6.90	28.57	1.72	6.12	3.12	14.81	3.08	17.39	4.17	14.29	8.82	17.65	4.00	22.41	5.33	5.26	2.90	11.63	10.87	26.98	2.58	5.72	3.15	0.107329	0.599192
K	intron_retention		chr19	+	chr19:14037891-14037987				chr19:14037890-14037891;chr19:14037987-14037988		2.94	2.78	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	4.55	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	4.00	3.03	NA	8.33	NA	5.88	5.88	0.00	NA	0.00	NA	0.00	1.47	1.47	0.615621	1.000000
K	intron_retention	GMPR2	chr14	+	chr14:24707612-24707794				chr14:24707611-24707612;chr14:24707794-24707795		22.73	18.00	33.33	NA	10.00	NA	1.45	14.29	13.51	21.43	7.14	31.82	5.88	14.75	9.76	8.70	7.14	17.65	11.11	18.75	16.33	28.57	20.00	18.75	18.18	21.15	17.46	8.00	14.52	12.00	26.67	27.45	29.41	17.65	13.16	33.33	14.55	19.95	5.39	0.980224	1.000000
N	jcn_only_AA	ATG5	chr6	-	chr6:106634338-106649846	chr6:106634552-106649846		chr6:106634338-106634551	chr6:106634337-106634338		91.18	100.00	95.00	100.00	100.00	80.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	89.47	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	94.31	-5.69	0.036555	0.663989
N	alternative_acceptor	CSNK1A1	chr5	-	chr5:148876424-148885045;chr5:148884299-148885045	chr5:148884547-148885045		chr5:148876424-148884298;chr5:148884299-148884546	chr5:148876423-148876424;chr5:148884298-148884299		8.20	17.39	7.79	8.70	8.33	4.17	2.00	1.45	1.32	1.49	1.47	1.89	1.35	1.67	3.03	1.82	0.00	0.00	11.76	2.22	8.00	3.03	6.15	3.92	NA	5.97	3.28	3.57	1.85	5.56	11.54	12.82	12.50	2.50	1.37	5.19	11.76	4.09	-7.67	0.323515	0.709013
K	intron_retention	ABCD4	chr14	-	chr14:74755469-74756185				chr14:74755468-74755469;chr14:74756185-74756186		10.00	0.00	12.20	NA	8.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	NA	0.00	7.69	8.33	NA	6.67	NA	0.00	19.23	18.52	NA	12.00	0.00	10.00	17.14	0.00	0.00	0.00	4.76	0.00	8.85	8.85	0.223540	1.000000
N	alternative_acceptor	TRPM2	chr21	+	chr21:45821781-45825024	chr21:45821781-45825021		chr21:45825022-45825024	chr21:45825024-45825025		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	9.52	NA	7.14	0.00	0.00	0.00	10.00	0.00	0.00	NA	NA	NA	6.25	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.177980	0.660713
K	alternative_acceptor	BRMS1L,PSMA3	chr14	+	chr14:58724717-58727676;chr14:58724717-58727686	chr14:58724717-58727665		chr14:58727666-58727676;chr14:58727677-58727686	chr14:58727676-58727677;chr14:58727686-58727687		89.36	100.00	94.59	86.05	97.62	100.00	97.22	87.50	83.93	96.84	100.00	91.41	100.00	88.33	90.00	86.72	93.15	98.33	100.00	94.34	100.00	95.45	83.33	96.88	NA	94.44	94.44	87.69	100.00	89.26	83.93	96.30	96.15	85.71	86.27	97.37	100.00	88.84	-11.16	0.001748	0.302671
K	intron_retention	ABTB1	chr3	+	chr3:127395927-127396010				chr3:127395926-127395927;chr3:127396010-127396011		10.53	2.00	14.29	12.50	1.79	NA	3.70	0.00	0.00	0.00	2.50	0.00	1.92	0.00	9.52	0.00	3.45	0.00	5.00	8.33	10.00	0.00	5.08	0.00	11.11	6.56	11.11	4.55	3.17	0.00	12.24	12.50	8.33	9.68	9.09	0.00	4.35	7.45	3.10	0.974355	1.000000
K	intron_retention		chr7	+	chr7:4829561-4830089				chr7:4829560-4829561;chr7:4830089-4830090		44.64	27.78	36.96	29.73	28.30	32.26	8.00	0.00	4.17	14.29	5.26	7.69	6.45	5.71	6.06	1.96	12.50	NA	20.00	35.42	33.33	40.00	34.69	39.47	40.62	20.93	30.23	23.33	26.32	23.53	43.48	45.31	35.42	39.62	32.00	45.21	23.89	28.18	4.29	0.911917	1.000000
N	alternative_donor	COPZ1	chr12	+	chr12:54741836-54743403	chr12:54742818-54743403		chr12:54741836-54742817	chr12:54741835-54741836		7.27	6.67	13.79	4.35	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	4.00	1.33	5.88	4.48	8.11	5.00	3.33	5.45	2.94	1.72	2.13	2.56	7.02	1.85	6.12	4.23	6.90	2.24	2.95	0.71	0.916640	0.981916
N	cassette	ZBTB7B	chr1	+	chr1:154975420-154987130;chr1:154982874-154987130;chr1:154983492-154987130	chr1:154975420-154986490,chr1:154982874-154986490,chr1:154983492-154986490;chr1:154986570-154987130		chr1:154986491-154986569			24.44	23.08	23.21	NA	NA	NA	22.81	27.42	27.27	NA	11.11	NA	14.86	24.36	24.39	14.81	12.07	NA	NA	23.33	NA	NA	13.04	NA	0.00	15.56	19.51	NA	NA	NA	NA	21.74	NA	NA	22.22	NA	18.84	24.36	5.52	0.248848	0.709176
N	cassette	PSMC5	chr17	+	chr17:61906924-61907630;chr17:61907310-61907630	chr17:61907310-61907492,chr17:61906924-61907492;chr17:61907550-61907630		chr17:61907493-61907549			93.18	88.89	94.38	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.14	100.00	90.00	100.00	96.30	97.92	97.32	93.75	100.00	100.00	95.92	98.41	98.51	97.67	90.91	94.12	80.49	98.70	96.84	97.50	95.00	100.00	5.00	0.303105	0.709176
N	jcn_only_AD	CPT2	chr1	+	chr1:53676992-53678935;chr1:53678489-53678935	chr1:53676923-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		7.50	0.00	5.88	0.00	0.00	0.00	4.26	0.00	10.87	6.67	8.06	0.00	0.00	0.00	0.00	0.00	8.00	0.00	4.76	7.50	4.35	14.29	2.56	0.00	0.00	4.65	6.56	9.09	11.43	13.64	0.00	6.15	4.35	0.00	4.00	8.16	2.13	2.33	0.20	0.580541	0.790420
N	cassette	SLC11A1	chr2	+	chr2:219252679-219255920;chr2:219252679-219257703	chr2:219252679-219254592;chr2:219254752-219255920,chr2:219254752-219257703		chr2:219254593-219254751			96.31	100.00	94.27	100.00	96.72	NA	100.00	99.14	100.00	100.00	99.33	100.00	100.00	99.09	100.00	100.00	100.00	100.00	82.35	96.71	91.00	96.30	95.24	100.00	100.00	98.72	98.29	97.01	100.00	100.00	100.00	96.38	100.00	96.15	93.65	96.30	100.00	98.91	-1.09	0.688594	0.885445
N	alternative_acceptor	RAB35	chr12	-	chr12:120541750-120546220	chr12:120541754-120546220		chr12:120541750-120541753	chr12:120541749-120541750		100.00	100.00	100.00	NA	NA	NA	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	NA	97.14	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.645879	0.869308
K	intron_retention	PSMD6	chr3	-	chr3:63996632-63999114				chr3:63996631-63996632;chr3:63999114-63999115		1.75	4.46	3.41	0.00	0.72	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.75	0.00	1.11	6.06	0.00	2.30	1.90	2.63	1.03	0.00	1.49	4.55	1.68	2.54	2.06	5.81	0.00	1.52	1.52	0.616336	1.000000
N	jcn_only_AA	TRPM2	chr21	+	chr21:45833958-45837809;chr21:45833958-45837822	chr21:45833958-45837825		chr21:45837810-45837822;chr21:45837823-45837825	chr21:45837822-45837823;chr21:45837825-45837826		4.35	7.89	0.00	NA	0.00	NA	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	9.52	0.00	NA	0.00	5.80	4.17	0.00	0.00	4.88	0.00	0.00	0.00	5.88	9.09	0.00	5.26	4.76	6.49	0.91	0.00	-0.91	0.491894	0.749150
K	intron_retention		chr19	+	chr19:50016008-50017138				chr19:50016007-50016008;chr19:50017138-50017139		30.51	54.55	41.46	NA	25.00	NA	13.46	9.52	NA	5.00	8.70	0.00	23.75	24.14	NA	0.00	13.46	3.85	25.00	35.71	46.15	10.53	22.50	16.67	78.05	45.71	34.48	33.33	28.57	12.50	NA	44.00	26.67	22.22	32.26	18.52	25.84	30.51	4.68	0.773236	1.000000
K	intron_retention	RPL3	chr22	-	chr22:39712847-39713465				chr22:39712846-39712847;chr22:39713465-39713466		8.70	0.93	4.73	2.13	1.02	0.85	0.12	2.56	2.02	0.36	0.28	0.00	0.23	2.78	2.07	0.86	0.29	0.00	1.21	12.16	2.58	2.86	1.35	3.41	1.63	11.11	7.94	0.90	0.96	1.56	19.67	14.75	2.44	2.95	1.86	2.04	1.07	9.90	8.83	0.057080	1.000000
K	intron_retention		chr8	+	chr8:17143937-17152495				chr8:17143936-17143937;chr8:17152495-17152496		3.51	0.00	3.64	0.00	3.33	14.29	3.45	6.52	5.77	2.86	2.74	3.51	2.94	5.41	1.69	3.45	2.99	0.00	5.56	2.27	6.98	3.57	5.88	3.23	NA	2.27	2.08	6.06	6.25	7.32	7.84	1.61	9.09	7.14	2.17	3.64	3.45	4.46	1.01	0.987941	1.000000
K	intron_retention	DOK3	chr5	-	chr5:176932112-176935237				chr5:176932111-176932112;chr5:176935237-176935238		7.14	8.00	4.65	0.00	6.25	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.88	3.92	2.70	NA	3.85	NA	7.14	1.82	4.46	0.00	5.26	0.00	0.00	1.64	0.00	5.00	3.70	NA	2.94	0.91	-2.03	0.598525	1.000000
N	jcn_only_AA	HLA-DQA1	chr6	+	chr6:32610031-32610728;chr6:32610031-32622443	chr6:32610031-32610386		chr6:32610387-32610728;chr6:32610729-32622443	chr6:32610728-32610729;chr6:32622443-32622444		94.74	95.93	95.45	95.92	94.31	94.17	98.01	96.90	98.36	96.52	93.43	95.00	NA	NA	100.00	NA	NA	NA	NA	NA	94.74	NA	NA	NA	100.00	97.83	96.00	95.45	92.07	95.51	100.00	100.00	100.00	100.00	100.00	100.00	99.00	97.37	-1.64	0.473670	0.732365
K	cassette	ARAP1	chr11	-	chr11:72414125-72416849	chr11:72414125-72415196;chr11:72415380-72416849		chr11:72415197-72415379			73.33	81.69	76.10	NA	76.00	NA	96.07	96.58	95.41	100.00	93.40	95.24	95.93	95.18	95.80	96.12	94.34	100.00	80.00	80.88	86.67	83.72	74.58	75.76	85.29	86.24	81.07	90.32	76.47	93.75	85.48	82.40	71.43	80.95	81.03	82.98	83.49	85.86	2.37	0.823809	0.941790
N	alternative_acceptor	SLC26A11	chr17	+	chr17:78223087-78224971;chr17:78223087-78223764;chr17:78223087-78223974;chr17:78223087-78225127	chr17:78223087-78223980		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		4.35	1.82	5.00	0.00	1.54	0.00	0.00	0.00	NA	0.00	1.67	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	3.45	0.00	2.86	3.23	0.00	4.76	3.23	0.00	0.00	1.54	0.00	2.08	4.17	0.00	2.50	1.92	0.00	0.00	3.23	3.23	0.194888	0.660713
K	intron_retention	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139918669-139918943				chr5:139918668-139918669;chr5:139918943-139918944		4.44	0.00	3.39	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	2.63	4.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.825099	1.000000
K	cassette	SLC30A5	chr5	+	chr5:68419253-68425273	chr5:68419253-68423830;chr5:68423960-68425273		chr5:68423831-68423959			94.74	100.00	93.75	NA	85.71	NA	90.62	91.67	86.96	89.74	92.86	89.47	91.30	NA	87.50	95.45	92.31	100.00	NA	92.31	85.71	95.45	91.67	88.24	NA	NA	96.30	100.00	100.00	80.00	100.00	89.29	100.00	86.67	93.75	90.32	95.65	93.53	-2.12	0.813230	0.937478
K	intron_retention	MINK1	chr17	+	chr17:4800109-4800498				chr17:4800108-4800109;chr17:4800498-4800499		13.95	3.95	13.04	NA	8.47	NA	2.17	0.00	0.00	0.00	1.79	0.00	2.44	0.00	2.63	6.45	3.57	NA	9.68	7.69	10.91	0.00	5.88	NA	17.39	5.00	8.70	5.56	6.45	0.00	16.13	15.00	9.76	10.34	13.79	5.13	6.81	6.35	-0.47	0.988227	1.000000
K	intron_retention	CORO7	chr16	-	chr16:4405165-4405286				chr16:4405164-4405165;chr16:4405286-4405287		4.41	4.61	9.09	2.70	2.40	0.00	0.00	0.00	2.70	0.00	0.95	0.00	0.00	1.52	4.44	0.00	0.00	0.00	4.03	1.23	6.56	2.44	4.46	3.03	13.92	5.26	5.77	0.00	2.68	0.00	3.53	3.92	6.48	0.00	5.66	2.50	4.32	2.52	-1.80	0.644486	1.000000
N	jcn_only_AD	CLN5	chr13	+	chr13:77574131-77574592;chr13:77572221-77574592	chr13:77570263-77574592		chr13:77570263-77572220;chr13:77572221-77574130	chr13:77570262-77570263;chr13:77572220-77572221		100.00	100.00	100.00	NA	100.00	100.00	100.00	96.00	95.24	94.44	94.44	100.00	100.00	87.23	95.07	96.77	96.88	100.00	100.00	100.00	100.00	100.00	100.00	86.36	NA	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	96.88	88.64	100.00	100.00	0.00	0.240513	0.657607
N	jcn_only_AA	INTS9	chr8	-	chr8:28627265-28627405;chr8:28625894-28627405	chr8:28625840-28627405		chr8:28625840-28625893;chr8:28625894-28627264	chr8:28625839-28625840;chr8:28625893-28625894		95.45	100.00	97.78	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	HNRNPDL	chr4	-	chr4:83349600-83350400				chr4:83349599-83349600;chr4:83350400-83350401		2.27	0.00	5.32	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.98	0.00	0.33	0.00	NA	4.55	0.00	0.00	0.87	1.75	NA	0.00	1.39	0.00	2.94	0.00	3.33	9.09	7.14	2.80	4.76	4.05	0.00	1.14	1.14	0.447960	1.000000
K	cassette	PDCD4	chr10	+	chr10:112653957-112655705	chr10:112653957-112654169;chr10:112654281-112655705		chr10:112654170-112654280			100.00	88.00	100.00	NA	NA	NA	100.00	92.86	92.86	NA	100.00	NA	100.00	100.00	92.86	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.938085	0.984560
N	jcn_only_AA		chr12	+	chr12:53432196-53433033;chr12:53432196-53433018	chr12:53432196-53433021		chr12:53433019-53433021;chr12:53433022-53433033	chr12:53433021-53433022;chr12:53433033-53433034		100.00	100.00	100.00	100.00	100.00	100.00	99.51	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	99.57	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	100.00	100.00	100.00	97.59	100.00	100.00	99.07	100.00	100.00	100.00	0.00	0.518488	0.760908
N	cassette	DOK1	chr2	+	chr2:74782796-74783434;chr2:74782581-74783434	chr2:74782581-74783020,chr2:74782796-74783020;chr2:74783206-74783434		chr2:74783021-74783205			81.08	69.33	76.79	NA	76.92	NA	94.74	90.91	97.22	NA	95.00	NA	95.56	100.00	96.43	100.00	84.21	NA	70.97	77.42	83.87	NA	77.78	NA	78.26	90.24	77.59	92.31	86.79	NA	88.46	75.47	75.00	80.00	74.42	100.00	76.63	89.35	12.72	0.233552	0.709176
K	alternative_acceptor	RNF10	chr12	+	chr12:121000874-121001136;chr12:121000874-121001243;chr12:121000874-121001134	chr12:121000874-121001149		chr12:121001135-121001136;chr12:121001137-121001149;chr12:121001150-121001243	chr12:121001136-121001137;chr12:121001149-121001150;chr12:121001243-121001244		92.11	100.00	93.33	94.74	91.18	NA	94.74	93.41	94.00	89.23	89.55	94.83	94.37	92.31	93.02	93.02	92.31	89.58	100.00	94.20	94.29	90.32	93.90	92.42	92.31	94.12	95.60	94.44	95.00	94.83	91.80	91.00	93.75	92.24	88.76	90.84	94.56	92.86	-1.70	0.089478	0.592597
N	cassette	DLGAP4	chr20	+	chr20:35125470-35127990	chr20:35125470-35125849;chr20:35126006-35127990		chr20:35125850-35126005			0.00	0.00	2.13	NA	NA	NA	0.00	0.00	0.67	1.00	0.00	0.00	0.00	0.00	0.56	1.96	0.00	0.00	NA	0.00	0.00	5.26	0.00	2.78	9.09	1.82	0.00	0.00	4.76	2.08	0.00	0.00	NA	1.85	3.03	4.05	0.00	0.00	0.00	0.451556	0.752775
K	intron_retention		chr16	-	chr16:70415766-70416707				chr16:70415765-70415766;chr16:70416707-70416708		3.45	7.14	0.84	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.612201	1.000000
N	alternative_acceptor	PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50362345;chr19:50361911-50363350	chr19:50361911-50363242		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		88.68	93.79	81.16	95.92	93.86	95.65	92.11	87.50	93.75	90.91	92.11	91.67	95.83	95.24	91.67	92.00	93.02	100.00	94.52	93.55	96.77	82.61	89.66	86.96	94.15	84.00	86.96	83.33	91.67	90.32	90.91	90.38	94.67	83.78	87.23	86.11	94.34	89.80	-4.54	0.054712	0.570243
N	jcn_only_AA	CREB1,INO80B,INO80B-WBP1	chr2	+	chr2:208442380-208461637	chr2:208442380-208444244		chr2:208444245-208461637	chr2:208461637-208461638		0.00	NA	0.00	NA	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	-1.28	0.230096	0.663989
K	intron_retention	DOCK2	chr5	+	chr5:169483773-169484583				chr5:169483772-169483773;chr5:169484583-169484584		10.87	6.67	12.86	NA	3.03	NA	0.00	0.00	0.00	0.00	0.98	0.00	2.38	0.00	4.55	0.00	0.83	0.00	6.25	6.38	6.67	0.00	5.04	1.85	NA	8.16	12.50	0.00	2.11	0.00	11.76	10.64	0.00	2.74	7.14	1.69	2.38	7.27	4.89	0.712948	1.000000
K	intron_retention	AKT1	chr14	-	chr14:105237185-105238701				chr14:105237184-105237185;chr14:105238701-105238702		2.86	0.00	4.40	0.00	0.00	0.00	0.93	0.00	0.00	0.91	0.59	0.00	0.00	1.04	0.94	1.96	0.53	0.00	0.00	4.23	0.00	0.00	3.03	5.56	0.00	1.43	2.20	1.89	2.27	0.00	4.88	1.82	0.00	1.79	1.85	5.26	0.00	2.15	2.15	0.096144	1.000000
K	alternative_acceptor	MICAL1	chr6	-	chr6:109767561-109767898	chr6:109767616-109767898		chr6:109767561-109767615	chr6:109767560-109767561		100.00	89.80	93.75	85.71	100.00	NA	97.73	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	NA	88.89	100.00	94.64	100.00	94.12	84.62	100.00	95.74	96.55	91.30	92.59	93.33	97.83	90.48	100.00	92.50	100.00	91.43	98.87	98.91	0.05	0.328631	0.709013
N	cassette	PHKG2	chr16	+	chr16:30764879-30767687	chr16:30764879-30767502;chr16:30767594-30767687		chr16:30767503-30767593			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.33	NA	90.00	NA	100.00	100.00	88.89	NA	100.00	NA	87.50	90.24	100.00	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	IL18	chr11	-	chr11:112025785-112034628;chr11:112033770-112034628;chr11:112019460-112034628;chr11:112030095-112034628	chr11:112025806-112034628					0.00	0.00	5.31	0.00	3.57	NA	2.40	4.76	5.08	1.14	0.00	4.65	2.26	4.58	10.26	2.01	0.00	3.49	12.50	3.45	2.47	0.00	4.08	0.00	NA	4.69	3.67	0.00	3.57	0.00	9.09	2.99	15.00	4.08	5.38	5.13	2.40	4.63	2.23	0.565533	0.794456
N	alternative_last_exon	SEC14L1	chr17	+	chr17:30807650-30808328;chr17:30807650-30814493	chr17:30807650-30807770	chr17:30814494-30818274	chr17:30807771-30810336			93.10	97.56	91.11	100.00	97.78	100.00	96.15	100.00	96.00	95.08	97.56	100.00	96.55	95.65	96.67	96.39	97.87	100.00	100.00	92.31	97.73	97.50	95.83	89.66	100.00	93.94	94.74	97.22	100.00	100.00	90.91	86.11	97.22	98.25	95.56	97.92	97.39	93.52	-3.87	0.042763	0.227559
N	jcn_only_AA	NCAPH2,PARVG	chr22	+	chr22:44587985-44588976;chr22:44587985-44589680;chr22:44587985-44589685	chr22:44587985-44588837		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		3.12	1.02	2.08	3.12	2.17	4.44	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00	0.00	0.00	0.00	5.07	2.86	0.00	0.00	2.47	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	4.24	1.64	0.00	1.03	0.81	0.00	-0.81	0.476480	0.736198
K	intron_retention	SGK1	chr6	-	chr6:134492054-134492160				chr6:134492053-134492054;chr6:134492160-134492161		18.18	0.00	8.33	0.00	3.33	NA	2.00	0.00	NA	2.53	2.26	NA	2.33	0.00	NA	0.93	4.27	NA	0.00	15.00	NA	6.45	7.92	8.33	NA	4.76	NA	0.00	5.81	NA	6.90	7.69	NA	10.09	9.35	0.00	1.00	5.83	4.83	0.210525	1.000000
K	alternative_acceptor	TPTEP1	chr22	+	chr22:17092784-17094966	chr22:17092784-17094874		chr22:17094875-17094966	chr22:17094966-17094967		8.33	NA	23.53	NA	NA	NA	24.00	28.57	29.41	11.76	18.92	29.41	18.75	16.67	26.67	18.75	14.29	NA	0.00	33.33	NA	NA	13.33	NA	NA	NA	25.00	20.00	30.00	NA	NA	26.67	25.00	20.00	15.79	15.79	21.38	22.62	1.25	0.577066	0.839239
N	alternative_acceptor	STX4	chr16	+	chr16:31045436-31045546;chr16:31045436-31045493	chr16:31045436-31045524		chr16:31045494-31045524;chr16:31045525-31045546	chr16:31045524-31045525;chr16:31045546-31045547		6.19	5.05	7.69	9.02	6.33	14.04	2.73	4.03	5.26	6.40	5.71	5.33	5.75	4.95	8.89	5.68	4.73	6.93	6.25	4.50	7.21	5.71	6.57	6.75	0.00	6.61	4.82	5.35	4.86	6.62	8.21	7.34	8.11	5.94	5.91	6.47	5.40	5.57	0.17	0.434241	0.744748
K	jcn_only_AD	OSGEP	chr14	-	chr14:20916971-20917122	chr14:20916971-20917060		chr14:20917061-20917122	chr14:20917122-20917123		9.09	14.56	28.12	11.11	19.72	NA	2.08	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	14.49	5.88	11.76	0.00	17.28	12.50	19.51	10.00	18.75	18.75	12.70	16.67	NA	19.05	19.40	10.53	15.09	7.32	14.53	7.48	-7.04	0.228894	0.657607
K	intron_retention	NUCB1	chr19	+	chr19:49425723-49425861				chr19:49425722-49425723;chr19:49425861-49425862		96.42	100.00	100.00	94.63	96.89	100.00	100.00	100.00	100.00	92.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	92.73	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.987733	1.000000
N	jcn_only_AA	NRP1	chr10	-	chr10:33538857-33542955;chr10:33538478-33542955	chr10:33515218-33542955		chr10:33515218-33538477;chr10:33538478-33538856	chr10:33515217-33515218;chr10:33538477-33538478		100.00	100.00	100.00	90.48	100.00	81.82	99.71	97.92	100.00	99.23	99.50	99.09	99.57	100.00	100.00	98.31	99.44	98.58	100.00	98.11	86.67	100.00	100.00	96.23	100.00	100.00	100.00	95.52	97.85	91.18	100.00	100.00	88.89	96.55	100.00	100.00	99.85	100.00	0.15	0.513426	0.760908
N	alternative_acceptor		chr3	+	chr3:121836941-121850760;chr3:121836941-121838286	chr3:121836941-121838284		chr3:121838285-121838286;chr3:121838287-121850760	chr3:121838286-121838287;chr3:121850760-121850761		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	92.59	98.08	100.00	100.00	96.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor	KMT2B	chr19	+	chr19:36228165-36228536	chr19:36228165-36228489		chr19:36228490-36228536	chr19:36228536-36228537		0.00	0.00	4.08	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	4.76	0.00	2.38	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.92	3.45	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.363217	0.709013
N	alternative_donor	TLN1	chr9	-	chr9:35725725-35732071	chr9:35725725-35726372		chr9:35726373-35732071	chr9:35732071-35732072		6.25	2.50	4.84	NA	NA	NA	0.81	0.65	0.00	1.92	0.84	0.00	0.89	0.88	0.00	2.00	1.00	0.00	0.00	3.85	9.09	NA	4.76	5.26	2.94	2.17	4.17	0.00	5.26	NA	0.00	5.26	NA	4.76	4.17	4.35	0.89	1.52	0.63	0.457168	0.715132
N	cassette	MRPL33	chr2	+	chr2:27994667-28002299	chr2:27994667-27995540;chr2:27995560-28002299		chr2:27995541-27995559			94.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	SIRT6	chr19	-	chr19:4177136-4180778	chr19:4177136-4179100;chr19:4179284-4180778		chr19:4179101-4179283			88.00	100.00	90.62	90.00	100.00	NA	91.30	90.00	89.66	90.91	91.67	90.91	93.10	96.43	96.30	100.00	87.50	92.31	100.00	100.00	90.91	100.00	94.44	100.00	82.35	88.46	92.86	100.00	91.67	100.00	90.91	97.14	100.00	100.00	90.91	90.91	96.55	90.45	-6.09	0.552950	0.820483
K	intron_retention	ARL6IP4	chr12	+	chr12:123465814-123466141				chr12:123465813-123465814;chr12:123466141-123466142		39.29	36.28	55.56	31.11	35.92	29.41	20.00	26.32	27.50	18.33	21.82	16.67	28.04	35.00	34.15	26.09	21.65	17.95	34.15	40.91	36.78	43.75	39.51	32.14	28.33	29.41	48.78	20.00	23.21	26.32	50.00	60.00	29.63	29.41	26.92	32.61	28.98	37.14	8.16	0.313967	1.000000
N	alternative_acceptor	COX4I1	chr16	+	chr16:85839471-85840432;chr16:85839471-85840313;chr16:85839471-85840365;chr16:85839471-85840061	chr16:85839471-85840343		chr16:85840062-85840313;chr16:85840314-85840343;chr16:85840344-85840365;chr16:85840366-85840432	chr16:85840313-85840314;chr16:85840343-85840344;chr16:85840365-85840366;chr16:85840432-85840433		97.21	96.62	94.74	98.11	95.93	96.97	98.62	99.31	100.00	98.43	98.73	100.00	99.13	100.00	98.74	99.24	98.83	99.25	96.10	93.53	96.07	95.31	96.80	96.61	97.57	94.89	97.01	97.36	96.81	97.01	92.48	95.74	96.10	95.19	96.31	94.92	97.09	96.05	-1.05	0.441597	0.750964
K	intron_retention	CNPY2,RP11-977G19.10	chr12	-	chr12:56705199-56708634				chr12:56705198-56705199;chr12:56708634-56708635		3.28	6.62	4.26	11.43	10.98	11.36	8.51	6.90	9.52	8.47	16.36	12.12	5.95	13.64	14.74	13.64	16.36	11.76	6.50	4.00	8.03	2.44	5.26	1.85	8.11	3.45	2.02	2.70	8.00	7.84	5.17	4.60	5.74	4.84	9.72	3.06	6.56	4.58	-1.98	0.882211	1.000000
N	jcn_only_AA	BAZ2A	chr12	-	chr12:56993140-56993485	chr12:56993143-56993485		chr12:56993140-56993142	chr12:56993139-56993140		96.83	100.00	94.74	90.00	100.00	100.00	95.24	96.43	96.36	100.00	100.00	100.00	100.00	96.05	100.00	97.14	95.45	97.44	NA	94.83	93.10	100.00	100.00	94.12	NA	96.88	100.00	100.00	NA	96.23	94.12	95.56	86.67	100.00	100.00	97.59	97.62	96.24	-1.38	0.912245	0.969382
K	cassette	ARHGAP10	chr4	+	chr4:148968203-148985566	chr4:148968203-148984298;chr4:148984452-148985566		chr4:148984299-148984451			76.92	45.45	66.67	75.86	84.09	68.18	80.00	78.95	75.00	76.36	85.71	79.07	69.70	84.62	68.75	69.81	71.05	77.78	66.67	80.00	NA	82.98	79.31	83.54	NA	72.22	NA	78.69	82.54	80.85	80.95	81.25	80.00	81.63	81.82	90.00	69.70	79.47	9.77	0.172572	0.709176
N	alternative_acceptor	AP3S2,C15orf38-AP3S2	chr15	-	chr15:90395714-90414706;chr15:90380955-90414706;chr15:90408926-90414706	chr15:90404330-90414706		chr15:90380955-90395713;chr15:90395714-90404329;chr15:90404330-90408925	chr15:90380954-90380955;chr15:90395713-90395714;chr15:90404329-90404330		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	5.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
N	jcn_only_AA	EDF1	chr9	-	chr9:139743992-139757357;chr9:139756790-139757357;chr9:139757179-139757357;chr9:139756949-139757357	chr9:139756798-139757357		chr9:139743992-139756789;chr9:139756790-139756797;chr9:139756798-139756948;chr9:139756949-139757178	chr9:139743991-139743992;chr9:139756789-139756790;chr9:139756797-139756798;chr9:139756948-139756949		91.79	93.40	92.79	89.34	91.74	92.90	95.82	91.78	94.20	86.64	90.49	90.42	91.95	91.50	92.60	84.49	84.55	87.67	93.10	90.78	93.90	90.61	89.67	92.74	94.40	96.27	92.76	89.04	88.49	92.94	90.32	93.74	93.60	90.16	94.86	92.37	93.50	91.64	-1.86	0.146503	0.663989
N	jcn_only_AD	RAE1	chr20	+	chr20:55949858-55953068;chr20:55950127-55953068	chr20:55951323-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.12	0.00	0.00	0.00	9.09	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	PTPN23	chr3	+	chr3:47453689-47453772				chr3:47453688-47453689;chr3:47453772-47453773		12.50	11.11	0.00	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	9.52	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.69	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.924397	1.000000
K	cassette	MXD3,RAB24	chr5	-	chr5:176729646-176730009	chr5:176729646-176729752;chr5:176729832-176730009		chr5:176729753-176729831			98.71	95.45	97.39	100.00	100.00	100.00	100.00	98.08	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	97.83	100.00	97.98	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	98.41	96.83	95.33	94.74	100.00	100.00	100.00	98.91	99.35	0.44	0.430525	0.737355
K	alternative_last_exon	ZNF333	chr19	+	chr19:14828546-14828980;chr19:14828546-14841986	chr19:14828546-14829039	chr19:14841987-14844558	chr19:14829040-14832720			7.44	11.36	13.48	2.54	8.82	1.00	21.05	4.48	9.80	5.33	16.67	4.29	33.33	9.38	23.08	13.33	25.93	6.52	9.09	8.00	4.60	9.80	19.15	5.83	11.11	9.62	10.71	4.49	17.14	2.15	12.50	13.46	16.13	10.26	23.08	3.65	13.74	8.69	-5.05	0.072842	0.281549
N	alternative_acceptor	ATP6V0A1,TLK2	chr17	+	chr17:40666479-40673044;chr17:40666479-40668789	chr17:40666479-40666561		chr17:40666562-40668789;chr17:40668790-40673044	chr17:40668789-40668790;chr17:40673044-40673045		2.44	7.69	2.56	NA	0.00	NA	0.00	3.45	0.00	4.35	1.33	NA	1.43	0.00	NA	3.45	1.30	NA	NA	3.23	NA	0.00	8.51	NA	7.14	4.55	2.63	0.00	5.26	NA	0.00	5.00	NA	3.64	3.39	5.00	4.29	2.83	-1.45	0.444558	0.752032
K	intron_retention	CHD3	chr17	+	chr17:7812657-7813745				chr17:7812656-7812657;chr17:7813745-7813746		67.65	70.59	67.50	46.15	52.50	20.00	4.00	11.76	11.11	6.67	4.55	0.00	13.64	9.09	7.69	NA	12.90	NA	56.52	57.89	57.58	30.77	47.22	30.77	43.33	68.75	57.32	36.36	36.84	16.67	NA	63.46	53.85	42.86	46.43	28.57	48.59	57.89	9.30	0.976180	1.000000
K	cassette	WDR45	chrX	-	chrX:48934184-48935301;chrX:48934184-48935495	chrX:48934184-48934303;chrX:48934410-48935495,chrX:48934410-48935301		chrX:48934304-48934409			97.50	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.33	100.00	100.00	92.86	100.00	NA	100.00	97.37	100.00	100.00	100.00	100.00	97.62	100.00	94.44	100.00	98.04	100.00	100.00	0.00	0.225713	0.709176
K	cassette	MAP4K4	chr2	+	chr2:102476327-102481391;chr2:102476327-102480282	chr2:102476327-102477286;chr2:102477449-102481391,chr2:102477449-102480282		chr2:102477287-102477448			5.56	0.00	11.11	NA	NA	NA	13.64	6.67	15.00	15.91	12.50	12.20	9.52	16.00	22.22	10.47	15.56	16.23	NA	9.52	NA	12.00	3.70	14.29	0.00	9.52	18.18	0.00	18.18	11.32	5.00	7.69	NA	10.42	6.90	9.84	4.76	8.09	3.33	0.483772	0.773418
N	cassette	PNPLA2	chr11	+	chr11:818959-821740;chr11:818959-821627	chr11:818959-819573;chr11:819906-821740,chr11:819906-821627		chr11:819574-819905			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	95.92	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	96.43	100.00	NA	100.00	NA	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.187136	0.709176
N	alternative_acceptor	LACTB	chr15	+	chr15:63421850-63423184;chr15:63421850-63426576;chr15:63421850-63433478;chr15:63421850-63433199	chr15:63421850-63447849		chr15:63423185-63426576;chr15:63426577-63433199;chr15:63433200-63433478;chr15:63433479-63447849	chr15:63426576-63426577;chr15:63433199-63433200;chr15:63433478-63433479;chr15:63447849-63447850		0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	3.57	0.00	2.78	2.78	0.090692	0.595160
K	cassette	ITPA	chr20	+	chr20:3193873-3194630	chr20:3193873-3193964;chr20:3194030-3194630		chr20:3193965-3194029			NA	100.00	80.00	87.50	94.87	78.57	98.25	100.00	84.00	97.50	94.23	96.88	96.67	NA	87.80	97.01	100.00	91.43	93.55	85.71	88.24	94.29	98.00	95.65	100.00	91.67	94.12	96.30	95.83	91.67	76.92	NA	94.87	90.91	96.67	91.67	97.46	88.69	-8.77	0.172801	0.709176
K	alternative_acceptor	MAN1B1	chr9	+	chr9:140001262-140001726	chr9:140001262-140001701		chr9:140001702-140001726	chr9:140001726-140001727		80.00	79.17	91.67	NA	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	92.00	NA	84.38	88.24	89.29	NA	85.29	100.00	92.86	100.00	89.29	NA	85.71	NA	93.75	90.62	90.32	88.24	77.27	95.45	91.59	91.88	0.28	0.853605	0.947480
K	alternative_last_exon	TSFM	chr12	+	chr12:58186857-58195956;chr12:58186857-58201646;chr12:58186857-58189959	chr12:58186857-58196337	chr12:58195957-58196047;chr12:58201647-58201854;chr12:58189960-58191370	chr12:58196338-58196557			2.63	0.00	5.48	0.00	0.00	0.00	0.00	2.22	3.66	0.00	5.56	0.00	5.56	4.41	4.12	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	1.22	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	2.42	2.42	0.289741	0.491468
K	intron_retention	SLC4A1AP	chr2	+	chr2:27910888-27911566				chr2:27910887-27910888;chr2:27911566-27911567		0.00	0.00	7.14	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	2.04	0.00	0.00	0.00	0.00	2.27	0.00	0.00	1.92	0.00	0.00	4.08	4.23	3.45	2.44	0.00	2.44	1.56	2.27	5.56	6.06	6.25	0.00	2.35	2.35	0.380099	1.000000
K	intron_retention		chr2	+	chr2:96934397-96935005				chr2:96934396-96934397;chr2:96935005-96935006		10.00	11.11	22.86	9.09	8.00	NA	0.00	0.00	0.00	0.00	2.33	0.00	4.41	0.00	5.26	4.44	2.67	3.70	9.09	18.18	4.88	16.67	17.07	23.08	0.00	0.00	23.53	8.00	20.83	16.67	NA	18.52	6.06	17.65	20.83	21.74	5.23	0.00	-5.23	0.620115	1.000000
K	intron_retention	PER1	chr17	-	chr17:8044659-8045122				chr17:8044658-8044659;chr17:8045122-8045123		7.50	11.76	8.57	NA	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	NA	NA	7.32	11.76	9.38	0.00	4.17	NA	18.92	0.00	0.00	NA	NA	NA	6.90	9.71	10.29	0.00	5.26	0.00	8.80	3.45	-5.35	0.845158	1.000000
N	cassette	PKN1	chr19	+	chr19:14580330-14580723	chr19:14580330-14580563;chr19:14580627-14580723		chr19:14580564-14580626			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.13	97.17	97.70	98.15	97.56	94.29	82.38	90.79	100.00	83.72	84.13	91.18	100.00	100.00	100.00	100.00	100.00	100.00	89.35	88.08	79.80	92.45	91.14	86.84	99.06	98.59	-0.48	0.538614	0.810127
N	intron_retention		chr7	+	chr7:100275151-100275234				chr7:100275150-100275151;chr7:100275234-100275235		98.10	100.00	96.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.49	100.00	100.00	100.00	100.00	97.26	98.80	100.00	100.00	100.00	86.89	93.24	97.67	98.00	100.00	100.00	100.00	99.05	-0.95	0.483171	1.000000
K	intron_retention	ALDH16A1	chr19	+	chr19:49965058-49965140				chr19:49965057-49965058;chr19:49965140-49965141		NA	19.23	15.38	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	11.11	NA	0.00	NA	21.43	NA	27.27	13.64	4.55	NA	12.50	NA	0.00	15.38	6.67	NA	16.67	5.56	8.89	0.00	-8.89	0.697317	1.000000
K	intron_retention	CHD3	chr17	+	chr17:7813910-7814164				chr17:7813909-7813910;chr17:7814164-7814165		5.77	0.00	2.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.37	0.00	0.00	0.00	0.00	4.00	2.11	0.00	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.477886	1.000000
N	intron_retention		chr8	-	chr8:11701751-11703169				chr8:11701750-11701751;chr8:11703169-11703170		98.60	97.35	99.42	94.74	95.12	85.54	98.08	94.76	92.55	96.60	98.03	97.27	100.00	100.00	97.89	100.00	99.88	100.00	99.42	99.50	98.76	99.67	99.67	99.61	88.15	95.21	97.28	93.99	94.65	82.84	96.03	97.08	91.65	98.35	98.79	97.74	97.72	97.31	-0.40	0.338660	1.000000
K	alternative_donor	SHARPIN	chr8	-	chr8:145154973-145157953	chr8:145154973-145155645		chr8:145155646-145157953	chr8:145157953-145157954		6.52	8.93	7.02	18.18	9.68	30.00	1.96	3.23	4.00	2.56	1.59	0.00	2.04	3.57	6.25	5.13	2.56	0.00	12.50	8.11	6.25	5.56	7.14	15.38	14.29	10.53	9.76	4.76	5.77	4.55	9.38	10.42	15.38	8.33	7.69	11.11	10.71	7.31	-3.40	0.427862	0.688660
N	jcn_only_AA		chr22	+	chr22:50654297-50655123	chr22:50654297-50655119		chr22:50655120-50655123	chr22:50655123-50655124		96.36	100.00	100.00	100.00	98.36	100.00	100.00	98.41	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	93.33	100.00	100.00	100.00	99.20	-0.80	0.098146	0.663989
K	intron_retention	SUPT5H	chr19	+	chr19:39966817-39966895				chr19:39966816-39966817;chr19:39966895-39966896		3.70	2.70	3.67	1.43	1.56	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	4.57	3.53	2.11	1.47	2.44	1.28	1.81	2.90	0.84	0.00	1.18	9.72	7.00	3.97	2.37	1.98	1.82	1.48	2.75	1.28	0.620499	1.000000
K	alternative_acceptor	CDV3	chr3	+	chr3:133305567-133306739;chr3:133305567-133307196;chr3:133305567-133306005	chr3:133305567-133306002		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		54.84	80.00	42.40	76.92	72.22	81.08	42.86	41.73	49.72	44.38	42.46	39.30	37.43	39.53	37.14	39.38	40.23	31.89	NA	42.19	75.00	47.57	48.60	47.19	90.00	57.75	52.50	51.92	58.21	59.18	65.38	51.79	76.92	49.34	50.00	46.11	76.92	48.52	-28.41	0.237649	0.692777
N	alternative_donor	MED25	chr19	+	chr19:50338435-50338790	chr19:50338647-50338790		chr19:50338435-50338646	chr19:50338434-50338435		2.17	1.85	4.55	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	1.14	1.39	NA	0.00	6.25	1.64	3.06	2.13	0.00	0.00	3.39	3.28	3.85	2.44	4.00	4.17	4.48	0.82	1.65	0.83	0.428206	0.688660
K	intron_retention	PCM1	chr8	+	chr8:17872350-17882869				chr8:17872349-17872350;chr8:17882869-17882870		0.00	0.00	3.51	0.00	2.41	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	2.74	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	6.67	4.00	4.65	1.32	0.00	2.17	0.00	0.00	0.00	0.00	0.504574	1.000000
K	cassette	GLMP	chr1	-	chr1:156264357-156265316	chr1:156264357-156264549;chr1:156264808-156265316		chr1:156264550-156264807			49.06	38.55	41.84	53.33	45.07	NA	91.00	91.67	90.80	91.71	93.08	93.69	92.92	87.76	91.78	88.70	91.59	93.57	28.57	52.38	75.68	48.28	44.97	50.62	50.00	63.11	49.41	70.51	71.43	71.83	59.46	52.46	50.00	63.48	50.72	53.53	50.00	61.28	11.28	0.529075	0.804319
K	alternative_first_exon	ARAP1,MAP3K11	chr11	-	chr11:65375920-65380488	chr11:65375920-65378282	chr11:65380489-65381713	chr11:65378283-65378772			13.33	21.62	16.42	NA	0.00	NA	3.33	2.38	2.78	4.76	4.55	8.33	5.36	7.41	2.50	4.35	2.08	12.12	10.00	15.38	0.00	8.33	6.82	11.76	11.11	9.76	7.55	5.56	3.45	5.56	8.00	7.14	8.33	12.50	11.90	10.26	9.16	8.88	-0.29	0.860730	0.904783
N	alternative_acceptor	ABCC3	chr17	+	chr17:48755581-48756713;chr17:48755581-48756716;chr17:48755581-48755877;chr17:48755581-48757158	chr17:48755581-48757145		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		2.70	3.70	1.32	NA	3.85	NA	0.00	0.00	NA	0.00	0.00	0.00	4.55	NA	0.00	0.00	0.00	NA	7.69	4.35	3.33	0.00	5.00	0.00	5.56	3.23	0.91	0.00	1.96	0.00	4.35	1.09	0.00	3.12	3.45	0.00	4.12	3.23	-0.90	0.670374	0.880186
N	alternative_donor	NMB	chr15	-	chr15:85198641-85200406	chr15:85198641-85199877		chr15:85199878-85200406	chr15:85200406-85200407		6.67	0.00	7.69	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	10.00	0.00	8.33	0.00	7.69	NA	0.00	0.00	0.00	6.45	6.25	0.00	5.88	7.14	4.55	0.00	6.56	6.56	0.059341	0.421463
K	intron_retention	TUBA4A	chr2	-	chr2:220116046-220116286				chr2:220116045-220116046;chr2:220116286-220116287		14.29	25.00	5.56	NA	5.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	4.76	0.00	NA	4.00	NA	0.00	6.98	2.63	NA	11.76	NA	13.51	12.28	NA	8.57	5.88	NA	0.00	6.98	6.98	0.954549	1.000000
N	alternative_acceptor	AP3D1	chr19	-	chr19:2109344-2109871;chr19:2109125-2109871	chr19:2109207-2109871		chr19:2109125-2109206;chr19:2109207-2109343	chr19:2109124-2109125;chr19:2109206-2109207		89.13	87.10	91.84	83.33	87.50	71.43	91.18	91.30	91.30	97.37	97.06	94.44	94.29	93.10	96.55	88.57	96.97	100.00	100.00	87.10	96.00	87.88	90.91	96.97	100.00	92.86	89.13	92.86	100.00	83.33	89.29	90.70	94.74	89.80	88.89	89.29	94.52	90.30	-4.22	0.113748	0.605363
N	jcn_only_AA	STK11	chr19	+	chr19:1223172-1226452;chr19:1223172-1226457	chr19:1223172-1223636		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		3.23	1.72	0.00	3.33	0.00	10.26	0.00	0.00	0.00	6.45	1.89	0.00	2.99	4.55	0.00	2.38	6.06	11.11	1.27	3.70	2.47	0.00	6.67	0.00	5.56	0.00	3.39	3.85	7.89	9.52	0.00	1.67	2.02	4.55	5.13	7.69	1.87	1.61	-0.26	0.772222	0.898707
N	cassette	CDK16	chrX	+	chrX:47085427-47085981	chrX:47085427-47085677;chrX:47085802-47085981		chrX:47085678-47085801			97.30	82.35	92.50	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.14	100.00	100.00	100.00	NA	92.59	100.00	85.00	80.95	90.24	100.00	97.06	100.00	100.00	100.00	100.00	80.00	92.86	78.57	89.19	88.89	93.59	100.00	97.18	-2.82	0.699362	0.890039
N	jcn_only_AD	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298130;chr11:57297708-57298199	chr11:57297708-57298195		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		25.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	2.78	0.288202	0.657607
N	alternative_donor	MAP7D1	chr1	+	chr1:36622065-36636571;chr1:36621335-36636571	chr1:36627088-36636571		chr1:36621335-36622064;chr1:36622065-36627087	chr1:36621334-36621335;chr1:36622064-36622065		0.00	6.67	1.75	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	2.04	0.00	0.00	0.00	NA	0.00	0.00	NA	2.78	3.33	2.44	0.00	0.00	0.00	0.488200	0.745750
K	jcn_only_AA	AP5Z1	chr7	+	chr7:4826060-4827264	chr7:4826060-4827226		chr7:4827227-4827264	chr7:4827264-4827265		8.51	21.15	15.00	8.33	8.57	0.00	0.00	2.13	0.00	0.00	1.67	2.22	0.00	2.08	8.77	3.61	0.00	2.94	6.25	11.86	20.00	15.00	9.23	17.65	30.00	10.77	9.09	8.11	6.25	10.87	25.58	21.28	25.93	11.29	8.51	16.87	13.70	9.64	-4.06	0.581631	0.805192
K	jcn_only_AA	CPSF3L	chr1	-	chr1:1249302-1249680	chr1:1249486-1249680		chr1:1249302-1249485	chr1:1249301-1249302		0.00	8.51	9.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	5.00	0.00	0.00	0.00	0.00	0.00	4.76	3.57	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	ABR	chr17	-	chr17:936696-953289;chr17:916405-953289;chr17:936518-953289	chr17:948891-953289		chr17:916405-936517;chr17:936518-936695;chr17:936696-948890	chr17:916404-916405;chr17:936517-936518;chr17:936695-936696		0.00	0.00	0.00	NA	15.38	NA	0.00	0.00	0.00	0.62	1.08	0.53	1.80	0.00	0.00	0.00	0.75	0.68	NA	0.00	NA	3.77	4.31	1.21	0.00	0.00	0.00	0.00	4.00	9.30	0.00	0.00	NA	0.00	3.23	0.00	0.00	0.00	0.00	0.391002	0.663989
N	cassette	ADCK2	chr7	+	chr7:140380938-140389396;chr7:140379084-140389396	chr7:140379084-140386789,chr7:140380938-140386789;chr7:140387042-140389396		chr7:140386790-140387041			100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	95.00	97.78	NA	100.00	100.00	100.00	100.00	100.00	NA	86.96	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA		chr9	+	chr9:35660856-35660946;chr9:35660856-35660974	chr9:35660856-35660936		chr9:35660937-35660946;chr9:35660947-35660974	chr9:35660946-35660947;chr9:35660974-35660975		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	93.75	100.00	NA	100.00	NA	100.00	100.00	98.21	NA	100.00	NA	100.00	100.00	0.00	0.519102	0.760908
N	cassette	CHKB,CHKB-CPT1B	chr22	-	chr22:51018260-51018618;chr22:51018232-51018618	chr22:51018232-51018402,chr22:51018260-51018402;chr22:51018512-51018618		chr22:51018403-51018511			85.94	83.33	80.28	100.00	82.54	89.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.58	91.67	100.00	100.00	85.94	83.93	87.32	90.48	80.00	100.00	87.93	93.85	92.65	100.00	95.74	100.00	77.91	81.16	75.00	95.74	90.48	96.23	86.94	89.89	2.96	0.779328	0.934744
N	alternative_acceptor	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161962050-161967614;chr1:161966285-161967614;chr1:161948463-161967614	chr1:161954771-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		96.13	96.00	94.41	NA	91.43	NA	97.22	96.46	100.00	100.00	97.30	100.00	100.00	96.20	100.00	NA	100.00	NA	77.78	95.45	94.87	NA	95.56	100.00	84.06	95.16	96.49	100.00	95.45	NA	96.67	98.39	69.44	90.91	94.44	92.31	90.03	96.16	6.13	0.147523	0.651394
N	cassette	RBPJ	chr4	+	chr4:26426366-26432313;chr4:26430483-26432040	chr4:26426366-26431519,chr4:26430483-26431519;chr4:26431676-26432040,chr4:26431676-26432313		chr4:26431520-26431675			96.55	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.31	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.373901	0.709176
N	alternative_donor	SIGLEC1	chr20	-	chr20:3677536-3677731	chr20:3677536-3677727		chr20:3677728-3677731	chr20:3677731-3677732		3.20	18.18	2.56	NA	NA	NA	0.38	0.97	0.50	0.00	0.00	0.63	0.82	0.73	0.74	0.00	0.00	1.55	NA	6.12	0.00	7.69	2.94	7.95	12.50	2.18	2.63	10.53	2.86	2.86	4.35	3.39	NA	6.67	0.00	4.17	6.66	2.69	-3.97	0.338003	0.650093
N	alternative_donor	CARD16	chr11	-	chr11:104915386-104916017;chr11:104915386-104915522	chr11:104915386-104915917		chr11:104915523-104915917;chr11:104915918-104916017	chr11:104915917-104915918;chr11:104916017-104916018		11.11	4.00	9.68	17.65	4.35	11.76	0.00	4.76	0.00	3.85	4.35	4.00	0.00	6.67	NA	12.50	0.00	6.25	0.00	NA	0.00	0.00	0.00	10.34	0.00	8.11	5.41	9.76	1.56	8.47	3.51	3.95	0.00	10.00	NA	5.56	0.00	6.67	6.67	0.006098	0.178980
K	intron_retention		chr12	+	chr12:53861078-53862560				chr12:53861077-53861078;chr12:53862560-53862561		3.03	1.43	5.41	6.52	6.42	3.03	0.82	2.20	0.72	0.85	1.64	0.00	2.94	1.41	3.54	3.30	2.11	0.00	3.80	4.08	2.47	10.45	5.41	10.99	0.00	6.00	3.76	8.82	4.84	4.71	4.55	3.09	2.78	11.19	8.47	9.52	2.10	3.55	1.45	0.866788	1.000000
K	intron_retention	CYP27A1	chr2	+	chr2:219677473-219677646				chr2:219677472-219677473;chr2:219677646-219677647		3.75	2.00	6.33	2.38	0.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.94	2.24	1.48	1.75	1.97	0.00	2.53	2.94	3.61	0.00	0.00	0.00	4.27	3.91	5.41	2.86	4.53	1.27	1.47	2.59	1.12	0.981311	1.000000
N	cassette	RNF181	chr2	+	chr2:85823773-85824567;chr2:85823773-85824226	chr2:85823773-85823979;chr2:85824055-85824567,chr2:85824055-85824226		chr2:85823980-85824054			80.88	81.67	82.04	77.23	75.57	75.11	94.35	95.05	93.24	83.33	88.98	81.36	88.28	78.72	81.63	81.18	80.91	68.85	61.61	68.64	68.80	60.98	60.00	56.82	78.46	85.71	80.47	81.36	81.63	82.61	85.94	81.63	71.11	74.29	82.11	80.00	80.06	83.29	3.23	0.601915	0.850526
K	intron_retention	ABCC3	chr17	+	chr17:48735858-48736597				chr17:48735857-48735858;chr17:48736597-48736598		11.54	27.50	14.29	NA	5.26	NA	2.50	0.00	0.00	0.00	2.38	0.00	2.22	NA	13.33	0.00	3.12	0.00	14.29	5.26	10.00	8.33	21.43	0.00	7.69	15.38	18.75	NA	11.76	NA	NA	10.71	11.11	8.33	9.68	0.00	9.40	8.40	-1.00	0.976627	1.000000
K	intron_retention	ARSA	chr22	-	chr22:51066221-51066373				chr22:51066220-51066221;chr22:51066373-51066374		57.14	66.67	56.92	NA	52.17	NA	52.87	65.22	51.58	59.26	62.12	62.07	64.71	76.00	64.00	78.12	64.44	61.54	64.29	55.88	51.61	53.57	53.52	52.63	66.67	65.43	54.29	59.38	54.84	55.00	46.34	48.00	60.00	58.33	50.00	48.05	64.50	61.18	-3.32	0.968949	1.000000
K	intron_retention	UBA7	chr3	-	chr3:49845361-49845452				chr3:49845360-49845361;chr3:49845452-49845453		4.84	0.00	10.00	NA	0.00	3.45	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.49	0.00	NA	0.00	8.33	0.00	3.26	0.00	4.55	0.00	2.94	1.75	3.03	3.70	0.00	0.00	4.08	0.00	2.50	2.50	0.250188	1.000000
K	intron_retention		chr11	+	chr11:63987799-63987907				chr11:63987798-63987799;chr11:63987907-63987908		10.95	7.91	7.94	5.38	5.60	7.14	0.92	0.42	1.14	1.14	1.05	0.00	1.52	0.37	3.00	0.87	1.82	0.00	4.84	5.52	5.78	8.19	9.44	7.29	10.38	8.23	9.84	6.64	6.77	8.62	7.97	8.89	8.28	5.51	5.41	3.21	6.38	6.74	0.37	0.985398	1.000000
N	alternative_donor	MYL6B	chr12	+	chr12:56549386-56551251;chr12:56549278-56551251;chr12:56549814-56551251	chr12:56549377-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		89.47	89.36	84.21	100.00	96.77	100.00	100.00	100.00	95.45	91.67	85.71	100.00	95.83	90.91	90.48	100.00	94.12	NA	91.11	86.67	93.24	NA	100.00	NA	96.15	85.71	91.67	NA	100.00	93.33	76.47	84.85	86.36	NA	100.00	87.50	93.47	88.07	-5.40	0.222495	0.596749
N	cassette	ODF3B	chr22	-	chr22:50968990-50969365	chr22:50968990-50969140;chr22:50969282-50969365		chr22:50969141-50969281			100.00	100.00	100.00	100.00	94.74	96.49	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	CYTH2	chr19	+	chr19:48978207-48981322				chr19:48978206-48978207;chr19:48981322-48981323		9.52	16.13	9.30	14.29	7.14	25.00	0.00	2.50	0.00	0.00	0.00	4.55	0.00	0.00	3.45	5.56	0.00	2.78	12.50	6.25	5.56	0.00	6.45	0.00	0.00	6.98	5.13	0.00	3.85	5.88	8.00	4.88	14.81	9.52	14.29	15.38	6.25	6.62	0.37	0.783075	1.000000
N	alternative_donor	ADM	chr11	+	chr11:10327346-10327495	chr11:10327377-10327495		chr11:10327346-10327376	chr11:10327345-10327346		2.83	0.00	2.76	2.41	3.57	2.78	0.00	0.56	0.23	0.65	2.44	0.92	0.00	0.36	1.08	0.55	0.00	0.74	NA	2.36	2.23	2.56	1.78	2.44	NA	2.33	2.15	2.84	3.03	2.48	2.62	2.77	5.26	2.24	1.72	2.22	0.00	2.34	2.34	0.724342	0.885899
K	cassette	WDR45	chrX	-	chrX:48934184-48935301;chrX:48934184-48935495	chrX:48934184-48934303;chrX:48934413-48935495,chrX:48934413-48935301		chrX:48934304-48934412			96.77	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.48	100.00	NA	88.89	100.00	NA	100.00	96.30	NA	100.00	100.00	100.00	96.55	100.00	93.33	100.00	97.37	100.00	100.00	0.00	0.233925	0.709176
K	intron_retention	TRIM28	chr19	+	chr19:59059776-59059852				chr19:59059775-59059776;chr19:59059852-59059853		11.76	3.09	4.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00	11.36	7.02	0.00	1.39	2.44	0.00	3.12	1.83	0.00	0.00	0.00	20.93	14.85	10.87	0.00	2.50	4.76	0.00	7.24	7.24	0.366084	1.000000
K	alternative_donor	IDH3B	chr20	-	chr20:2640440-2640713	chr20:2640440-2640675		chr20:2640676-2640713	chr20:2640713-2640714		90.00	71.88	100.00	86.96	88.68	91.30	94.12	100.00	100.00	95.00	100.00	100.00	92.31	100.00	93.55	90.91	89.19	100.00	89.13	91.67	94.29	100.00	93.75	100.00	87.50	100.00	92.31	91.30	96.00	100.00	93.75	92.31	95.74	100.00	88.46	93.55	90.72	96.88	6.16	0.102147	0.504668
N	cassette	PPP6R1	chr19	-	chr19:55743351-55748010	chr19:55743351-55743442;chr19:55743580-55748010		chr19:55743443-55743579			96.74	84.09	96.00	100.00	95.35	NA	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.10	100.00	94.59	92.00	100.00	100.00	90.11	88.00	97.67	95.92	96.81	100.00	98.55	96.43	91.07	94.81	92.00	97.50	96.49	94.34	96.13	96.33	0.20	0.685252	0.885445
N	alternative_acceptor	MFSD11	chr17	+	chr17:74772624-74774282;chr17:74772624-74777122;chr17:74772624-74774301	chr17:74772624-74774269		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		100.00	88.24	100.00	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	87.50	100.00	94.12	NA	100.00	NA	86.67	91.30	100.00	91.67	100.00	NA	100.00	100.00	0.00	0.599234	0.847100
K	intron_retention	CALM2	chr2	-	chr2:47388920-47389670				chr2:47388919-47388920;chr2:47389670-47389671		100.00	89.61	87.50	88.24	92.12	NA	89.37	87.80	87.76	88.07	92.46	93.64	90.05	86.05	100.00	91.13	90.48	90.00	86.90	88.89	85.71	90.16	90.85	89.71	100.00	100.00	92.86	92.31	90.33	88.89	75.00	83.33	91.55	90.82	89.30	89.13	89.83	88.34	-1.48	0.993117	1.000000
N	alternative_acceptor		chr11	+	chr11:117860336-117863967;chr11:117860336-117862972;chr11:117860336-117863911	chr11:117860336-117863955		chr11:117862973-117863911;chr11:117863912-117863955;chr11:117863956-117863967	chr11:117863911-117863912;chr11:117863955-117863956;chr11:117863967-117863968		92.55	93.10	92.97	NA	NA	NA	99.07	98.64	99.17	98.90	97.70	98.96	99.01	98.99	96.93	99.31	99.12	99.07	NA	92.86	NA	95.65	93.55	94.48	90.91	94.09	93.98	97.62	94.12	97.10	89.66	92.05	NA	89.87	87.04	93.36	96.06	93.47	-2.58	0.694354	0.884684
N	jcn_only_AD		chr10	-	chr10:103868081-103868791	chr10:103868081-103868785		chr10:103868786-103868791	chr10:103868791-103868792		48.15	66.67	70.00	NA	46.15	NA	66.67	54.55	56.25	NA	64.29	NA	60.98	64.29	60.00	54.55	60.87	NA	66.67	50.00	68.75	NA	75.00	NA	NA	NA	58.82	NA	66.67	NA	45.45	64.29	66.67	NA	81.82	NA	66.67	50.00	-16.67	0.013822	0.285457
K	intron_retention	EIF3J	chr15	+	chr15:44853941-44855148				chr15:44853940-44853941;chr15:44855148-44855149		100.00	97.83	93.62	92.50	91.67	93.55	96.00	92.86	100.00	91.49	91.30	95.83	96.15	82.35	97.14	94.74	88.37	100.00	94.00	92.59	95.56	100.00	91.84	95.00	100.00	95.65	100.00	94.87	94.74	93.75	100.00	97.73	100.00	96.15	97.73	95.00	96.99	94.25	-2.74	0.586114	1.000000
N	alternative_acceptor		chr16	+	chr16:67917635-67917833;chr16:67917635-67917750	chr16:67917635-67917858		chr16:67917751-67917833;chr16:67917834-67917858	chr16:67917833-67917834;chr16:67917858-67917859		95.83	95.68	95.65	95.45	95.54	93.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.51	88.46	93.33	92.31	93.75	90.00	99.15	96.77	96.25	100.00	96.49	97.37	76.32	87.80	92.14	94.12	94.55	92.86	97.42	96.30	-1.12	0.349233	0.709013
N	jcn_only_AD	ILKAP	chr2	-	chr2:239102973-239103445;chr2:239102973-239103295	chr2:239102973-239103422		chr2:239103296-239103422;chr2:239103423-239103445	chr2:239103422-239103423;chr2:239103445-239103446		0.00	0.00	13.04	NA	10.00	NA	8.00	10.00	10.53	8.70	11.76	0.00	4.35	8.33	13.04	4.65	0.00	0.00	NA	10.00	NA	5.26	0.00	9.09	NA	NA	20.83	8.33	0.00	0.00	NA	19.05	0.00	16.67	4.00	15.38	2.17	9.16	6.99	0.243704	0.657607
K	jcn_only_AA	APOO	chrX	-	chrX:23851628-23858429	chrX:23851730-23858429		chrX:23851628-23851729	chrX:23851627-23851628		54.55	31.03	60.00	18.18	33.33	27.78	54.55	57.14	56.90	42.31	50.00	33.33	52.94	NA	61.54	40.00	40.00	NA	44.00	60.00	48.05	NA	36.84	NA	38.10	50.00	70.59	NA	56.25	38.46	58.33	63.64	41.67	45.83	50.00	42.11	42.84	57.14	14.30	0.018592	0.537091
N	jcn_only_AA	PNKP	chr19	-	chr19:50365495-50365627	chr19:50365539-50365627		chr19:50365495-50365538	chr19:50365494-50365495		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	81.25	96.77	NA	100.00	NA	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.221384	0.663989
K	intron_retention	RP11-848P1.3	chr17	-	chr17:29292175-29292331				chr17:29292174-29292175;chr17:29292331-29292332		83.87	80.99	NA	NA	88.89	NA	92.86	78.95	NA	NA	67.74	NA	81.08	86.67	75.00	NA	69.70	NA	84.21	87.50	81.25	NA	88.89	NA	87.01	69.57	72.73	NA	82.14	NA	85.71	83.33	74.68	NA	82.76	NA	82.64	84.79	2.14	0.978493	1.000000
N	cassette	ZDHHC3	chr3	-	chr3:44959636-44974609;chr3:44968340-44974609	chr3:44968340-44970797,chr3:44959636-44970797;chr3:44970929-44974609		chr3:44970798-44970928			100.00	100.00	94.87	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.74	100.00	97.62	100.00	100.00	91.67	94.74	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	C3	chr19	-	chr19:6679220-6679417	chr19:6679220-6679392		chr19:6679393-6679417	chr19:6679417-6679418		0.00	0.00	0.00	0.94	0.00	0.00	2.33	0.00	0.00	6.52	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	2.13	0.37	0.00	0.38	0.27	0.00	0.00	0.60	0.00	0.00	0.17	0.00	0.12	0.93	0.24	0.36	0.06	0.00	-0.06	0.395404	0.658590
N	alternative_last_exon	ERICH1	chr8	-	chr8:590835-618597;chr8:565285-618597	chr8:614677-618597	chr8:590583-590834;chr8:564746-565284	chr8:614200-614676			81.08	73.68	85.71	94.12	95.00	95.65	100.00	94.12	88.89	100.00	100.00	93.55	100.00	100.00	94.44	100.00	100.00	94.12	84.21	94.44	89.29	100.00	100.00	100.00	66.67	95.83	81.48	100.00	93.75	92.59	90.91	88.24	80.00	100.00	94.44	90.00	82.10	94.28	12.18	0.203540	0.432667
K	jcn_only_AA	DDX39A	chr19	-	chr19:14520686-14521027	chr19:14520794-14521027		chr19:14520686-14520793	chr19:14520685-14520686		2.78	0.00	2.38	0.00	0.00	0.00	2.70	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	2.20	0.00	0.00	4.76	0.00	5.56	0.00	0.00	0.00	0.00	0.00	3.66	0.00	0.00	0.00	0.00	0.00	0.420759	0.691465
N	jcn_only_AD	NARF	chr17	+	chr17:80443486-80445791	chr17:80443531-80445791		chr17:80443486-80443530	chr17:80443485-80443486		96.95	97.96	95.49	100.00	96.23	97.99	96.30	100.00	97.30	100.00	100.00	NA	100.00	91.67	96.72	100.00	100.00	83.33	97.99	96.67	96.90	100.00	89.47	97.56	98.38	100.00	97.30	100.00	100.00	100.00	97.18	95.28	98.12	100.00	100.00	95.89	98.06	97.06	-0.99	0.460814	0.714384
N	cassette	ITGAX	chr16	+	chr16:31366613-31367945	chr16:31366613-31367213;chr16:31367320-31367945		chr16:31367214-31367319			100.00	100.00	96.72	100.00	100.00	100.00	100.00	100.00	100.00	98.53	98.68	95.65	100.00	100.00	100.00	98.80	100.00	97.44	100.00	92.86	100.00	98.11	100.00	94.74	100.00	100.00	100.00	93.88	100.00	100.00	100.00	100.00	100.00	95.60	100.00	94.92	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	IKBKB	chr8	+	chr8:42182880-42183487;chr8:42180013-42183487	chr8:42180017-42183487		chr8:42180013-42180016;chr8:42180017-42182879	chr8:42180012-42180013;chr8:42180016-42180017		0.00	0.00	0.00	0.00	3.33	5.00	0.00	0.00	0.00	0.00	0.00	NA	2.04	0.00	0.00	0.00	0.00	0.00	3.23	0.00	5.26	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.188031	0.565751
N	alternative_donor	RASSF4	chr10	+	chr10:45465713-45467220	chr10:45465723-45467220		chr10:45465713-45465722	chr10:45465712-45465713		3.75	18.75	5.75	NA	NA	NA	1.56	1.60	2.26	2.85	1.33	3.57	4.55	3.04	4.93	3.45	4.26	7.96	0.00	4.05	3.37	3.57	3.92	10.14	0.00	3.47	5.99	16.22	6.52	9.57	2.56	1.83	7.69	5.97	5.48	9.14	3.05	3.25	0.20	0.461519	0.719680
N	jcn_only_AD	PARP10,SHARPIN	chr8	-	chr8:145158129-145159167;chr8:145158129-145158927;chr8:145158129-145159319;chr8:145158129-145158749	chr8:145158129-145158455		chr8:145158456-145158749;chr8:145158750-145158927;chr8:145158928-145159167;chr8:145159168-145159319	chr8:145158749-145158750;chr8:145158927-145158928;chr8:145159167-145159168;chr8:145159319-145159320		81.25	100.00	76.92	NA	NA	NA	100.00	100.00	100.00	100.00	84.21	NA	92.86	100.00	83.33	93.33	91.30	100.00	100.00	93.33	100.00	NA	95.24	NA	NA	100.00	85.71	100.00	94.74	NA	83.33	90.48	100.00	NA	100.00	100.00	100.00	96.66	-3.34	0.190884	0.657607
N	alternative_acceptor	VSIG4	chrX	-	chrX:65242009-65242682;chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242252-65242682	chrX:65242343-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		60.75	71.18	59.21	61.88	67.11	63.29	78.31	69.05	54.35	73.19	76.81	76.63	79.42	73.39	42.50	75.54	78.33	77.37	67.71	61.19	47.62	53.66	65.97	65.62	69.68	55.77	67.67	64.55	73.50	69.47	44.44	34.33	65.34	62.07	66.89	66.90	70.43	60.97	-9.46	0.047833	0.570243
K	intron_retention	RNF130	chr5	-	chr5:179440279-179467474				chr5:179440278-179440279;chr5:179467474-179467475		100.00	90.43	91.55	100.00	100.00	NA	96.10	84.38	96.00	93.91	92.53	95.54	92.17	100.00	100.00	95.06	95.04	100.00	81.25	86.36	100.00	91.46	92.05	89.08	100.00	100.00	98.39	100.00	100.00	89.86	92.45	100.00	100.00	92.59	92.05	92.63	94.13	96.22	2.09	0.992625	1.000000
N	jcn_only_AD	ANPEP	chr15	-	chr15:90347849-90348176;chr15:90347849-90348308	chr15:90347849-90348352		chr15:90348177-90348308;chr15:90348309-90348352	chr15:90348308-90348309;chr15:90348352-90348353		0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.07	0.00	0.00	0.00	0.78	0.00	0.00	0.00	0.77	0.00	0.00	NA	0.68	0.00	0.00	0.00	1.48	0.00	0.23	0.00	0.48	0.00	0.00	0.00	0.19	NA	0.74	0.00	1.52	0.00	0.04	0.04	0.196221	0.657607
N	alternative_acceptor	PARP4	chr13	-	chr13:25005615-25008532	chr13:25006835-25008532		chr13:25005615-25006834	chr13:25005614-25005615		5.10	2.44	8.93	0.00	3.85	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	1.37	2.67	2.78	1.92	3.23	0.00	3.75	1.64	0.00	2.53	2.56	4.35	6.06	3.33	2.78	1.54	3.08	2.94	4.41	2.08	10.00	5.26	7.84	1.04	3.34	2.30	0.102279	0.598353
K	jcn_only_AD	DHRS3	chr1	-	chr1:12640695-12676563;chr1:12640695-12655998	chr1:12640695-12677158		chr1:12655999-12676563;chr1:12676564-12677158	chr1:12676563-12676564;chr1:12677158-12677159		100.00	100.00	88.89	NA	100.00	NA	93.42	95.24	80.00	100.00	95.96	80.00	96.72	93.75	NA	84.62	98.86	93.75	93.75	96.43	87.10	NA	94.44	NA	100.00	100.00	89.80	NA	100.00	NA	91.67	87.50	100.00	NA	85.71	NA	98.36	95.84	-2.52	0.560462	0.778873
N	jcn_only_AA	C18orf21	chr18	+	chr18:33552871-33553554;chr18:33552871-33554858	chr18:33552871-33554902		chr18:33553555-33554858;chr18:33554859-33554902	chr18:33554858-33554859;chr18:33554902-33554903		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	5.00	NA	0.00	0.00	NA	0.00	0.00	0.00	8.33	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	ZMYND15	chr17	+	chr17:4647143-4647484	chr17:4647143-4647285;chr17:4647403-4647484		chr17:4647286-4647402			79.55	80.00	77.78	NA	68.57	NA	100.00	90.91	92.31	NA	100.00	NA	100.00	85.71	NA	NA	NA	NA	NA	82.61	92.00	NA	NA	NA	45.45	90.00	86.96	77.78	82.61	94.12	84.85	85.42	70.00	80.95	75.00	100.00	80.00	85.28	5.28	0.562212	0.824445
K	jcn_only_AA	NFKBIB,SIGLEC7	chr19	+	chr19:39390852-39395710	chr19:39390852-39395654		chr19:39395655-39395710	chr19:39395710-39395711		100.00	100.00	96.92	100.00	97.62	100.00	96.77	100.00	95.71	97.62	97.92	94.44	100.00	96.23	96.55	97.27	95.92	98.41	100.00	100.00	95.74	96.30	95.08	98.55	NA	100.00	95.31	94.00	94.74	96.88	98.39	96.34	100.00	96.30	100.00	98.86	100.00	100.00	0.00	0.787867	0.908316
N	coord_cassette	KRTCAP2	chr1	-	chr1:155142334-155145696	chr1:155142334-155144826;chr1:155144966-155145040;chr1:155145105-155145213;chr1:155145369-155145696		chr1:155144827-155144965;chr1:155145041-155145104;chr1:155145214-155145368			100.00	100.00	100.00	100.00	100.00	93.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	96.55	100.00	100.00	100.00	100.00	0.00	0.553467	0.748808
N	coord_cassette	TRNAU1AP	chr1	+	chr1:28893926-28904011	chr1:28893926-28897687;chr1:28897851-28898378;chr1:28898413-28904011		chr1:28897688-28897850;chr1:28898379-28898412			100.00	100.00	100.00	100.00	100.00	94.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	97.01	100.00	98.41	100.00	93.59	96.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	0.00	0.464274	0.692112
K	intron_retention	RBBP7	chrX	-	chrX:16870752-16870871				chrX:16870751-16870752;chrX:16870871-16870872		14.29	0.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	6.67	5.56	0.00	NA	0.00	0.00	0.00	5.26	0.00	NA	10.53	0.00	3.45	0.00	5.26	0.00	0.00	0.00	0.608000	1.000000
K	intron_retention	HDGF	chr1	-	chr1:156714939-156715088				chr1:156714938-156714939;chr1:156715088-156715089		0.00	0.00	3.31	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.59	0.67	0.76	0.00	0.00	1.43	0.00	3.39	1.72	1.89	7.14	0.00	1.38	0.00	2.53	0.00	7.50	3.12	5.00	2.25	2.08	2.15	0.00	0.00	0.00	0.729071	1.000000
K	intron_retention	FIBP	chr11	-	chr11:65651961-65652040				chr11:65651960-65651961;chr11:65652040-65652041		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	3.77	5.45	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.898651	1.000000
K	intron_retention	PLD2	chr17	+	chr17:4721681-4721788				chr17:4721680-4721681;chr17:4721788-4721789		11.90	50.00	14.29	NA	16.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	7.14	0.00	NA	NA	9.52	11.11	NA	18.18	NA	NA	4.17	12.00	13.33	8.33	0.00	6.25	12.70	0.00	9.68	19.44	8.33	2.17	5.21	3.04	0.816173	1.000000
K	intron_retention	RPL31	chr2	+	chr2:101622534-101622811				chr2:101622533-101622534;chr2:101622811-101622812		5.88	2.58	4.51	2.14	2.69	1.47	2.31	2.33	3.89	4.35	4.90	2.07	1.11	1.28	2.49	0.94	2.80	0.00	1.93	4.69	3.31	5.84	3.39	3.83	0.83	3.09	6.13	3.70	3.64	1.21	5.52	2.91	3.24	6.73	4.92	1.86	2.12	3.89	1.77	0.236358	1.000000
K	cassette	PTGR1	chr9	-	chr9:114325512-114332370	chr9:114325512-114326436;chr9:114326543-114332370		chr9:114326437-114326542			26.17	16.04	12.24	37.89	24.73	22.55	10.26	28.28	11.11	24.49	7.69	10.26	3.85	6.92	4.76	15.09	3.57	6.06	17.81	26.44	10.82	39.33	25.64	20.00	18.67	36.32	20.55	36.51	25.32	28.16	25.29	15.38	11.88	40.50	30.77	28.04	13.96	26.30	12.34	0.032249	0.450829
K	intron_retention	KLC1	chr14	+	chr14:104145856-104166991				chr14:104145855-104145856;chr14:104166991-104166992		66.67	67.21	54.17	57.14	63.33	33.33	70.00	72.73	46.15	73.33	64.29	80.00	35.00	60.00	69.23	55.00	62.50	69.23	56.76	60.00	50.00	54.55	60.87	NA	52.00	36.84	67.74	53.85	54.17	64.71	45.00	50.00	54.55	81.25	70.59	66.67	55.66	60.00	4.34	0.935917	1.000000
N	alternative_donor	WTAP	chr6	+	chr6:160173336-160174491;chr6:160169402-160174491;chr6:160171043-160174491;chr6:160172747-160174491	chr6:160169967-160174491		chr6:160169402-160169966;chr6:160169967-160171042;chr6:160171043-160172746;chr6:160172747-160173335	chr6:160169401-160169402;chr6:160169966-160169967;chr6:160171042-160171043;chr6:160172746-160172747		40.81	18.57	42.60	15.58	17.46	10.68	36.23	43.81	25.39	15.87	26.23	23.93	16.18	39.60	13.38	39.98	22.31	18.70	13.46	44.80	33.46	51.50	42.81	32.77	NA	50.49	43.83	32.69	31.45	16.67	56.38	52.07	13.33	44.50	44.08	41.05	16.18	44.30	28.12	0.001287	0.093044
N	alternative_last_exon	ZCCHC6	chr9	-	chr9:88913746-88916190,chr9:88914188-88916190;chr9:88889158-88916190	chr9:88903660-88916190	chr9:88889104-88889157	chr9:88902648-88903659			98.18	100.00	98.41	NA	98.57	NA	90.00	84.62	84.62	NA	100.00	NA	100.00	80.00	85.71	NA	88.89	NA	100.00	94.59	97.56	86.96	92.86	100.00	100.00	93.18	100.00	100.00	100.00	92.31	93.62	95.24	100.00	85.37	90.32	94.44	100.00	93.40	-6.60	0.047251	0.234050
K	cassette	NPEPL1,STX16-NPEPL1	chr20	+	chr20:57276215-57282178	chr20:57276215-57280553;chr20:57280626-57282178		chr20:57280554-57280625			11.76	0.00	5.00	NA	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	6.45	NA	0.00	NA	14.29	NA	3.57	NA	18.52	NA	0.00	11.11	11.54	NA	4.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.566907	0.828256
N	alternative_acceptor	BABAM1	chr19	+	chr19:17384995-17386585;chr19:17384995-17387332;chr19:17384995-17386597	chr19:17384995-17386609		chr19:17386586-17386597;chr19:17386598-17386609;chr19:17386610-17387332	chr19:17386597-17386598;chr19:17386609-17386610;chr19:17387332-17387333		100.00	100.00	100.00	NA	90.48	NA	100.00	NA	100.00	92.86	100.00	100.00	100.00	100.00	89.47	100.00	96.15	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	92.31	100.00	NA	100.00	100.00	100.00	100.00	100.00	91.67	100.00	83.33	100.00	100.00	0.00	0.373901	0.709013
N	alternative_acceptor	GUK1	chr1	+	chr1:228333769-228334561;chr1:228333769-228334503	chr1:228333769-228334542		chr1:228334504-228334542;chr1:228334543-228334561	chr1:228334542-228334543;chr1:228334561-228334562		87.27	93.17	86.41	85.59	89.29	82.76	89.68	92.13	92.86	90.13	92.89	92.52	93.33	87.36	88.89	88.64	92.16	93.02	85.29	85.56	84.57	88.35	90.86	89.41	87.67	91.76	85.00	86.67	86.39	84.62	84.47	80.57	89.12	93.02	88.00	89.16	89.40	87.31	-2.09	0.395366	0.712674
K	intron_retention	RELB	chr19	+	chr19:45513081-45515193				chr19:45513080-45513081;chr19:45515193-45515194		0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	1.39	9.09	2.94	4.17	1.25	0.00	0.00	0.00	0.601311	1.000000
K	intron_retention	DDX27	chr20	+	chr20:47855593-47855772				chr20:47855592-47855593;chr20:47855772-47855773		15.38	3.45	9.43	7.69	0.00	35.42	0.00	7.41	3.45	2.13	0.00	15.62	0.00	9.52	0.00	0.00	0.00	19.23	0.00	24.00	5.56	0.00	0.00	10.34	2.17	17.39	0.00	4.17	0.00	15.00	23.53	3.64	1.23	6.98	0.00	22.22	0.61	16.39	15.77	0.003031	1.000000
K	intron_retention	IKBKB	chr8	+	chr8:42179464-42179571				chr8:42179463-42179464;chr8:42179571-42179572		8.70	0.00	7.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.78	3.45	0.00	0.00	0.00	0.00	2.86	0.00	0.00	2.50	0.00	5.00	0.00	2.70	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AD	HCK	chr20	+	chr20:30640290-30642018	chr20:30640982-30642018		chr20:30640290-30640981	chr20:30640289-30640290		0.00	0.00	7.84	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	9.09	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	8.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AA	TMEM150B	chr19	-	chr19:55821664-55828153	chr19:55824424-55828153		chr19:55821664-55824423	chr19:55821663-55821664		100.00	100.00	96.20	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	NA	94.12	100.00	100.00	100.00	93.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr5	-	chr5:176940084-176940353				chr5:176940083-176940084;chr5:176940353-176940354		4.08	1.49	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	1.85	0.00	1.59	0.00	5.88	0.00	1.89	0.00	0.00	0.00	7.32	7.69	11.36	0.00	2.50	0.00	0.74	2.04	1.29	0.443596	1.000000
K	intron_retention	LYPLA2	chr1	+	chr1:24120816-24120916				chr1:24120815-24120816;chr1:24120916-24120917		1.54	0.00	10.00	15.38	8.82	8.33	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	2.00	0.00	1.82	NA	2.78	4.08	2.13	4.17	8.00	14.29	5.13	7.14	6.06	7.14	6.25	5.88	11.36	10.45	7.14	9.09	9.84	6.45	2.09	2.81	0.72	0.866310	1.000000
K	alternative_first_exon	DHPS	chr19	-	chr19:12791140-12792373	chr19:12791140-12791846	chr19:12792374-12792716	chr19:12791847-12792020			15.79	0.00	3.45	NA	NA	NA	0.00	25.00	5.26	0.00	0.00	0.00	0.00	16.67	10.87	0.00	0.00	0.00	NA	12.50	7.69	NA	0.00	NA	NA	16.67	4.17	0.00	0.00	10.00	7.69	0.00	0.00	NA	0.00	7.69	0.00	16.23	16.23	0.001084	0.016459
K	jcn_only_AA	OGFOD3	chr17	-	chr17:80361865-80363199	chr17:80361967-80363199		chr17:80361865-80361966	chr17:80361864-80361865		100.00	96.00	93.33	100.00	100.00	100.00	95.65	92.86	100.00	100.00	96.97	100.00	92.31	NA	92.31	93.33	100.00	NA	95.45	100.00	90.00	100.00	94.59	100.00	NA	100.00	NA	100.00	96.43	100.00	94.12	100.00	93.75	100.00	95.45	97.06	95.45	100.00	4.55	0.170612	0.663989
K	coord_cassette	SDS	chr12	-	chr12:113835198-113837360	chr12:113835198-113836319;chr12:113836412-113836511;chr12:113836652-113836916;chr12:113836957-113837360		chr12:113836320-113836411;chr12:113836512-113836651;chr12:113836917-113836956			98.36	92.31	100.00	NA	100.00	NA	100.00	99.45	100.00	100.00	99.46	100.00	100.00	98.04	100.00	100.00	97.83	100.00	100.00	98.81	99.33	100.00	100.00	100.00	100.00	99.32	100.00	100.00	100.00	100.00	98.98	99.17	82.35	100.00	100.00	100.00	100.00	98.90	-1.10	0.351462	0.643829
K	intron_retention	LAT	chr16	+	chr16:28997538-28997702				chr16:28997537-28997538;chr16:28997702-28997703		2.13	6.25	4.17	NA	13.04	NA	4.17	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	0.00	4.26	3.03	7.69	20.00	NA	NA	0.00	7.89	NA	0.00	NA	5.19	8.57	7.69	8.33	0.00	5.88	4.17	2.13	-2.04	0.433817	1.000000
N	alternative_acceptor	NCKAP1L,OS9	chr12	+	chr12:58109754-58109874;chr12:58109754-58109885	chr12:58109754-58109871		chr12:58109872-58109874;chr12:58109875-58109885	chr12:58109874-58109875;chr12:58109885-58109886		33.74	39.80	31.75	30.77	33.33	30.00	20.25	23.40	23.35	24.19	19.89	22.76	24.18	21.00	19.35	19.81	20.13	21.43	41.94	33.07	32.39	29.23	32.54	32.99	45.95	31.79	32.65	26.03	28.04	30.68	31.37	35.37	36.84	37.04	35.34	35.09	38.32	31.58	-6.74	0.261223	0.709013
K	cassette	INTS8	chr8	+	chr8:95885706-95888301	chr8:95885706-95886779;chr8:95886831-95888301		chr8:95886780-95886830			89.66	100.00	95.65	NA	97.22	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	95.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.29	NA	100.00	100.00	100.00	88.24	93.48	100.00	100.00	100.00	100.00	100.00	0.00	0.826770	0.942436
K	alternative_acceptor	ARRDC1	chr9	+	chr9:140508222-140508432;chr9:140508222-140508591	chr9:140508222-140508483		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		90.91	91.80	83.33	NA	95.45	NA	100.00	89.29	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.75	94.12	81.25	NA	84.62	NA	93.33	96.55	84.00	NA	100.00	NA	93.75	87.50	100.00	92.31	94.74	100.00	96.88	93.94	-2.94	0.313899	0.709013
N	jcn_only_AD	PHPT1	chr9	+	chr9:139744026-139744464	chr9:139744043-139744464		chr9:139744026-139744042	chr9:139744025-139744026		100.00	100.00	100.00	99.35	99.07	100.00	98.99	100.00	98.75	97.86	98.83	100.00	98.96	94.59	98.25	97.86	97.35	100.00	99.32	100.00	98.14	100.00	98.89	98.95	100.00	100.00	100.00	100.00	100.00	100.00	98.82	100.00	98.68	100.00	98.17	99.55	99.16	100.00	0.84	0.660075	0.824391
K	intron_retention		chr19	-	chr19:55603695-55603809				chr19:55603694-55603695;chr19:55603809-55603810		2.86	7.77	3.96	6.82	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	5.56	1.90	3.64	5.13	10.43	8.70	4.08	1.00	2.44	3.45	4.55	0.00	9.09	5.88	6.12	5.56	2.78	6.67	4.82	1.45	-3.37	0.899235	1.000000
N	alternative_acceptor	MYO9B	chr19	+	chr19:17322584-17322809;chr19:17322584-17325268;chr19:17322584-17322703	chr19:17322584-17322868		chr19:17322704-17322809;chr19:17322810-17322868;chr19:17322869-17325268	chr19:17322809-17322810;chr19:17322868-17322869;chr19:17325268-17325269		2.36	1.31	3.53	3.20	1.74	13.85	5.13	6.67	8.33	7.04	5.41	8.70	5.94	12.20	4.55	5.94	6.72	7.84	2.97	2.41	3.94	2.68	1.19	1.92	1.88	1.74	2.88	2.59	1.36	2.22	2.86	2.70	2.70	2.44	2.30	1.41	2.83	2.63	-0.20	0.472549	0.775521
K	intron_retention	SPNS1	chr16	+	chr16:28990793-28992790				chr16:28990792-28990793;chr16:28992790-28992791	chr16:28990726-28990792;chr16:28992791-28992936	7.14	0.00	7.14	0.00	1.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	3.57	0.98	0.00	0.00	3.57	5.26	0.00	1.43	1.61	2.04	0.00	3.23	0.00	3.23	0.00	0.00	1.85	4.92	0.00	3.85	4.35	4.17	0.00	2.54	2.54	0.413327	1.000000
K	alternative_first_exon	ZNF706	chr8	-	chr8:102213972-102217322;chr8:102213972-102218081;chr8:102213972-102217662	chr8:102213972-102216877,chr8:102213972-102214560	chr8:102218082-102218292;chr8:102217663-102217960	chr8:102216878-102217007			3.23	4.11	4.50	2.44	4.55	0.00	5.88	1.41	2.73	3.01	3.72	9.24	2.84	1.59	0.93	2.45	2.86	3.74	0.00	6.12	5.17	3.67	2.04	6.85	0.00	5.66	2.41	3.06	3.25	6.82	4.55	4.29	3.23	6.25	3.37	4.76	3.04	3.89	0.85	0.408843	0.561769
N	alternative_acceptor	LCP2	chr5	-	chr5:169697922-169701304	chr5:169700043-169701304		chr5:169697922-169700042	chr5:169697921-169697922		4.26	27.27	3.45	NA	NA	45.45	0.00	0.38	0.00	0.46	0.00	0.15	0.89	0.48	0.86	0.35	0.59	0.16	NA	3.36	25.00	1.37	1.85	0.96	33.33	2.78	2.38	1.39	2.78	2.82	8.00	5.13	NA	3.12	2.44	1.44	14.08	3.07	-11.01	0.257310	0.709013
K	jcn_only_AD	RPL10A	chr6	+	chr6:35436805-35437157	chr6:35437063-35437157		chr6:35436805-35437062	chr6:35436804-35436805		2.22	1.47	1.01	0.00	1.19	1.29	0.00	0.00	0.00	0.37	0.36	0.00	0.00	0.00	0.38	0.51	0.00	0.00	0.71	0.00	0.89	1.14	0.58	0.74	0.00	0.00	1.03	0.75	0.00	0.00	5.41	0.00	1.02	0.00	0.78	0.56	0.35	0.00	-0.35	0.462872	0.716059
K	intron_retention	MPDU1	chr17	+	chr17:7490336-7490478				chr17:7490335-7490336;chr17:7490478-7490479		10.00	7.27	15.00	16.67	10.17	9.09	2.78	1.59	2.02	3.57	4.63	2.94	1.77	3.28	4.90	2.25	2.94	1.72	14.71	17.02	13.73	16.13	18.18	10.00	23.53	7.55	12.77	7.89	10.42	7.69	25.58	20.00	10.71	10.91	11.76	11.43	8.99	8.78	-0.21	0.974547	1.000000
K	cassette	PPT1	chr1	-	chr1:40539856-40544231	chr1:40539856-40542513;chr1:40542586-40544231		chr1:40542514-40542585			96.10	89.69	91.43	100.00	89.77	100.00	91.68	91.76	96.91	92.56	93.10	95.04	93.45	91.11	92.59	91.75	91.65	93.93	93.55	97.14	89.80	96.09	94.37	93.19	76.92	92.31	92.11	91.67	91.88	91.86	95.08	88.89	100.00	92.52	93.47	94.10	92.56	93.69	1.13	0.392007	0.709492
K	intron_retention		chr19	+	chr19:36245221-36245293				chr19:36245220-36245221;chr19:36245293-36245294		9.68	17.65	6.45	12.50	10.14	11.67	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	14.29	0.00	8.54	8.70	11.39	8.33	12.90	6.25	12.86	8.70	4.76	4.35	0.00	10.00	22.64	21.15	21.98	14.29	13.64	6.67	10.70	8.70	-2.00	0.891531	1.000000
K	intron_retention	NUMA1	chr11	-	chr11:71727577-71728732				chr11:71727576-71727577;chr11:71728732-71728733		0.00	11.76	7.14	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00	NA	5.88	NA	0.00	4.76	2.86	0.00	0.00	8.11	NA	0.00	0.00	NA	3.23	NA	0.00	3.70	2.08	0.88	0.00	-0.88	0.769974	1.000000
K	intron_retention	APH1A	chr1	-	chr1:150240528-150241097				chr1:150240527-150240528;chr1:150241097-150241098		1.27	5.88	4.94	NA	0.00	NA	2.60	0.68	0.90	2.08	1.55	1.65	0.00	0.68	0.00	1.89	1.27	1.98	0.00	3.41	4.76	0.00	1.37	6.12	0.00	3.41	3.08	2.08	2.00	1.96	1.96	4.35	NA	6.41	1.33	5.52	0.00	1.61	1.61	0.801453	1.000000
N	alternative_acceptor	HEXB	chr5	+	chr5:74014189-74014584;chr5:74014189-74014621	chr5:74014189-74014733		chr5:74014585-74014621;chr5:74014622-74014733	chr5:74014621-74014622;chr5:74014733-74014734		3.89	0.00	3.94	4.35	3.30	2.39	0.00	4.06	0.00	2.82	0.00	0.00	2.76	0.00	2.67	3.86	2.93	2.56	6.23	8.14	5.27	3.64	3.78	0.00	0.00	2.24	3.64	4.13	0.00	0.00	6.53	6.34	6.64	4.63	4.05	2.82	1.38	3.97	2.59	0.401263	0.718692
K	alternative_donor	CNOT3	chr19	+	chr19:54656737-54657451	chr19:54656820-54657451		chr19:54656737-54656819	chr19:54656736-54656737		5.13	0.00	0.00	2.78	5.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	2.08	5.26	2.86	0.00	4.88	3.45	2.44	0.00	0.00	0.00	4.44	1.64	4.44	3.57	0.00	0.00	0.00	3.04	3.04	0.446271	0.706203
K	cassette	BTF3L4	chr1	+	chr1:52530611-52551783	chr1:52530611-52549011;chr1:52549214-52551783		chr1:52549012-52549213			88.89	84.09	90.57	80.95	87.50	88.89	85.07	74.29	77.50	74.07	86.57	72.00	83.53	75.00	68.09	74.07	88.61	84.62	82.14	84.62	69.70	80.00	86.84	84.00	77.27	82.76	94.87	80.95	87.50	75.00	86.67	90.32	83.87	76.74	83.02	81.25	83.70	83.69	-0.01	0.826255	0.942251
N	alternative_acceptor	LACTB	chr15	+	chr15:63421850-63426576;chr15:63421850-63447849;chr15:63421850-63433478;chr15:63421850-63433199	chr15:63421850-63423184		chr15:63423185-63426576;chr15:63426577-63433199;chr15:63433200-63433478;chr15:63433479-63447849	chr15:63426576-63426577;chr15:63433199-63433200;chr15:63433478-63433479;chr15:63447849-63447850		5.26	4.55	5.00	4.17	3.12	2.50	0.00	5.88	5.88	4.00	0.00	3.03	0.00	7.14	5.56	4.00	0.00	3.85	5.00	5.56	5.00	0.00	3.57	2.56	6.67	5.56	6.25	0.00	0.00	2.08	4.55	4.35	4.76	2.94	4.00	3.57	4.65	5.56	0.91	0.122200	0.608355
K	cassette	STK4	chr20	+	chr20:43653772-43703658	chr20:43653772-43681726;chr20:43681822-43703658		chr20:43681727-43681821			0.00	0.00	2.38	NA	0.00	0.00	0.00	1.89	0.97	0.00	3.57	5.36	1.89	2.50	2.37	4.76	6.52	5.81	NA	0.00	0.00	NA	0.00	8.33	NA	0.00	0.00	NA	NA	7.14	0.00	0.00	0.00	4.17	3.33	4.26	0.00	0.00	0.00	0.708034	0.895178
K	cassette	SEC11C	chr18	+	chr18:56823040-56825863	chr18:56823040-56824839;chr18:56824898-56825863		chr18:56824840-56824897			100.00	95.33	100.00	95.83	98.82	98.65	96.36	100.00	100.00	98.25	98.55	100.00	94.64	100.00	93.10	96.36	100.00	100.00	97.14	97.73	96.30	95.45	97.20	100.00	93.83	100.00	100.00	100.00	100.00	95.65	100.00	100.00	96.41	94.23	95.59	97.26	95.84	100.00	4.16	0.000122	0.038633
K	jcn_only_AA	CUEDC1	chr17	-	chr17:55940647-55943834	chr17:55940719-55943834		chr17:55940647-55940718	chr17:55940646-55940647		0.00	0.00	6.06	13.33	6.67	14.29	0.00	3.70	0.00	0.00	2.63	0.00	4.76	0.00	8.82	0.00	2.13	0.00	0.00	7.27	5.56	0.00	3.92	0.00	0.00	4.41	7.89	10.00	5.56	7.69	8.51	0.00	3.12	7.14	3.92	5.41	0.00	4.05	4.05	0.151782	0.663989
K	intron_retention	BRD2	chr6	+	chr6:32944714-32945218				chr6:32944713-32944714;chr6:32945218-32945219		8.82	12.07	9.17	18.75	20.00	NA	5.26	5.19	3.31	2.86	4.00	2.56	3.85	8.72	6.54	6.33	4.29	1.90	25.00	7.10	14.71	5.00	8.98	4.43	NA	8.11	8.21	11.39	10.45	10.00	5.08	5.19	34.62	5.77	7.73	4.72	12.07	7.60	-4.47	0.352924	1.000000
N	jcn_only_AD		chr16	-	chr16:1503896-1504415	chr16:1503896-1504411		chr16:1504412-1504415	chr16:1504415-1504416		97.14	100.00	96.51	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	96.67	100.00	100.00	98.31	100.00	100.00	100.00	100.00	97.73	100.00	95.74	100.00	93.65	100.00	100.00	0.00	0.174688	0.657607
N	coord_cassette	PIK3C3	chr18	+	chr18:39629570-39661086	chr18:39629570-39644703;chr18:39644795-39647351;chr18:39647478-39661086		chr18:39644704-39644794;chr18:39647352-39647477		chr18:39629256-39629569;chr18:39661087-39661148	85.71	90.24	100.00	100.00	96.88	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	93.75	100.00	NA	89.66	94.12	94.12	94.44	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.997157	0.997566
K	jcn_only_AA	COPS6,CREB5	chr7	+	chr7:99686690-99686915	chr7:99686690-99686912		chr7:99686913-99686915	chr7:99686915-99686916		100.00	100.00	100.00	NA	95.45	NA	98.15	100.00	97.50	100.00	96.23	100.00	100.00	100.00	93.94	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	0.00	0.478886	0.738379
N	jcn_only_AA	HMGA2	chr12	+	chr12:53846161-53848533	chr12:53846161-53848509		chr12:53848510-53848533	chr12:53848533-53848534		100.00	100.00	99.07	NA	100.00	NA	98.98	100.00	100.00	97.69	96.04	97.65	97.72	100.00	100.00	100.00	97.93	100.00	NA	100.00	100.00	93.75	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.18	100.00	100.00	100.00	100.00	0.00	0.932557	0.977987
K	intron_retention	SDR39U1	chr14	-	chr14:24909699-24909988				chr14:24909698-24909699;chr14:24909988-24909989		84.21	73.33	74.51	66.67	76.00	93.33	63.89	61.54	76.67	71.43	51.35	57.89	55.00	62.50	85.71	65.00	76.92	64.71	79.31	77.42	64.71	86.96	69.57	64.52	90.48	71.88	81.63	72.00	69.09	81.58	73.91	80.39	61.11	66.67	63.33	82.35	68.61	72.89	4.28	0.988167	1.000000
K	cassette	MITD1	chr2	-	chr2:99787116-99787972	chr2:99787116-99787805;chr2:99787893-99787972		chr2:99787806-99787892			94.12	88.24	95.45	NA	92.59	NA	88.24	95.00	100.00	81.82	94.44	NA	100.00	100.00	100.00	90.91	94.44	NA	93.75	92.86	100.00	86.67	97.67	100.00	100.00	84.62	96.30	88.89	91.18	100.00	90.62	95.89	91.18	100.00	93.18	90.32	92.47	93.49	1.03	0.822349	0.941649
N	jcn_only_AD	LUC7L	chr16	-	chr16:239339-239929;chr16:239339-239979;chr16:239339-239945	chr16:239339-239966		chr16:239930-239945;chr16:239946-239966;chr16:239967-239979	chr16:239945-239946;chr16:239966-239967;chr16:239979-239980		73.17	87.18	88.89	75.00	79.49	83.92	81.25	NA	80.95	77.78	80.00	77.14	85.71	NA	81.48	86.11	84.00	72.73	78.10	80.00	81.18	84.44	79.63	82.05	89.00	69.57	87.80	87.80	87.23	78.95	75.61	83.33	80.00	86.36	72.97	80.36	83.48	74.39	-9.09	0.017079	0.307491
K	intron_retention	UBA7	chr3	-	chr3:49842871-49843329				chr3:49842870-49842871;chr3:49843329-49843330		7.50	4.37	6.90	0.00	5.08	3.75	0.00	0.00	2.44	0.00	0.00	0.00	0.00	5.48	6.52	7.69	0.00	6.67	1.87	2.04	2.30	NA	0.00	5.00	0.00	0.00	0.00	9.09	0.00	3.75	4.65	3.70	2.72	5.56	0.00	4.69	0.94	3.35	2.41	0.660436	1.000000
K	jcn_only_AD	TAPBPL	chr12	+	chr12:6570105-6571199	chr12:6570557-6571199		chr12:6570105-6570556	chr12:6570104-6570105		0.00	4.24	2.27	4.00	5.13	3.74	3.03	6.25	10.26	4.17	5.00	0.00	0.00	13.04	11.76	0.00	0.00	0.00	0.00	0.00	6.17	0.00	0.00	0.00	0.00	1.23	0.00	0.00	1.82	0.00	5.56	4.76	5.50	6.06	0.00	0.00	1.51	3.39	1.88	0.365497	0.657607
N	alternative_acceptor	GRAMD1A,KMT2B	chr19	+	chr19:35514452-35514608;chr19:35514452-35517018;chr19:35514452-35516916;chr19:35514452-35516952	chr19:35514452-35514600		chr19:35514601-35514608;chr19:35514609-35516916;chr19:35516917-35516952;chr19:35516953-35517018	chr19:35514608-35514609;chr19:35516916-35516917;chr19:35516952-35516953;chr19:35517018-35517019		3.72	1.08	4.95	1.80	0.00	1.19	0.00	1.18	0.98	0.78	0.00	0.70	0.00	1.31	2.51	1.39	0.00	0.88	0.00	3.33	1.85	4.31	3.45	6.68	0.00	3.77	3.29	1.72	0.00	2.37	1.36	3.00	0.00	6.04	4.41	5.73	0.00	2.35	2.35	0.006072	0.405868
K	alternative_acceptor	ATPIF1	chr1	+	chr1:28562964-28564347	chr1:28562964-28564271		chr1:28564272-28564347	chr1:28564347-28564348		7.25	6.51	6.90	2.86	4.91	5.63	2.11	1.85	3.30	2.24	2.28	1.68	3.93	0.00	3.75	3.88	3.14	2.06	4.91	6.78	4.14	10.00	6.13	6.67	6.38	5.41	7.52	5.88	7.37	4.48	7.94	5.97	6.18	5.33	7.00	5.38	5.54	6.10	0.55	0.932021	0.980313
K	cassette	UBXN6	chr19	-	chr19:4446195-4446496	chr19:4446195-4446279;chr19:4446411-4446496		chr19:4446280-4446410			92.54	96.35	100.00	90.48	95.10	95.95	100.00	98.33	97.01	97.06	98.99	100.00	99.07	94.74	95.24	98.51	97.78	100.00	95.04	94.83	96.12	88.24	93.62	100.00	97.42	96.55	97.47	97.78	96.20	97.83	92.86	96.19	93.75	93.18	91.80	98.25	96.88	94.78	-2.10	0.168700	0.709176
K	intron_retention		chr19	+	chr19:1073590-1073672				chr19:1073589-1073590;chr19:1073672-1073673		0.00	9.68	3.39	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	NA	0.00	0.00	0.00	7.89	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.891896	1.000000
K	cassette	AGPAT2	chr9	-	chr9:139569260-139571412	chr9:139569260-139571036;chr9:139571133-139571412		chr9:139571037-139571132			77.78	88.66	75.00	63.64	73.68	71.43	89.36	81.36	91.67	84.00	82.46	66.67	91.30	87.76	78.57	84.62	75.47	80.00	89.29	78.00	74.51	66.67	78.69	NA	77.42	75.56	67.44	81.82	81.13	NA	81.82	82.00	79.69	72.73	68.42	72.73	88.97	79.68	-9.29	0.092181	0.658231
K	intron_retention		chr19	+	chr19:58905963-58906048				chr19:58905962-58905963;chr19:58906048-58906049		3.57	0.33	1.83	0.00	0.00	0.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.65	2.70	1.16	0.41	0.25	0.45	0.29	0.00	0.00	0.00	0.00	0.00	13.70	3.57	1.83	0.36	0.00	0.00	0.31	1.35	1.04	0.482633	1.000000
N	jcn_only_AA	CXorf38	chrX	-	chrX:40487829-40489865	chrX:40489415-40489865		chrX:40487829-40489414	chrX:40487828-40487829		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.30	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.78	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	cassette	MAP2K2	chr19	-	chr19:4097342-4101016	chr19:4097342-4099198;chr19:4099413-4101016		chr19:4099199-4099412			97.30	96.61	100.00	100.00	100.00	100.00	99.11	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	98.96	100.00	98.77	98.21	100.00	94.44	99.07	97.06	100.00	100.00	98.85	97.83	100.00	100.00	98.46	95.05	95.40	98.21	100.00	97.92	98.94	99.23	0.29	0.474502	0.770157
K	alternative_acceptor	CR1L,TMEM51	chr1	+	chr1:15541928-15545825	chr1:15541928-15545821		chr1:15545822-15545825	chr1:15545825-15545826		86.89	93.75	91.30	100.00	89.55	NA	86.49	79.41	91.67	83.61	83.72	84.15	87.23	100.00	100.00	84.38	84.67	87.32	66.67	100.00	85.71	83.33	88.54	84.21	NA	100.00	94.59	90.91	86.05	83.87	89.66	90.91	92.31	82.50	88.89	83.58	87.23	94.83	7.60	0.257412	0.709013
N	cassette	GAK	chr4	-	chr4:845763-858909;chr4:844873-858909	chr4:845763-853393,chr4:844873-853393;chr4:853511-858909		chr4:853394-853510			92.86	100.00	100.00	100.00	96.97	100.00	100.00	100.00	98.21	100.00	96.88	100.00	98.25	100.00	100.00	96.23	100.00	96.67	100.00	96.77	95.95	100.00	100.00	100.00	85.11	97.12	98.72	96.15	100.00	100.00	93.26	96.91	100.00	100.00	100.00	98.06	100.00	96.94	-3.06	0.844586	0.948671
K	intron_retention		chr9	-	chr9:114325512-114326436				chr9:114325511-114325512;chr9:114326436-114326437		0.00	0.00	5.26	2.04	8.11	6.12	NA	0.00	NA	2.27	NA	NA	NA	0.00	NA	0.00	NA	NA	7.14	0.00	4.35	3.92	8.82	5.88	28.57	2.91	7.50	1.30	5.88	8.51	3.28	10.81	0.00	4.51	8.89	10.00	3.57	0.00	-3.57	0.435916	1.000000
N	jcn_only_AA	ARID1A,SLC50A1	chr1	+	chr1:155110575-155110671;chr1:155110575-155110655	chr1:155110575-155110637		chr1:155110638-155110655;chr1:155110656-155110671	chr1:155110655-155110656;chr1:155110671-155110672		0.00	0.00	4.76	6.45	0.00	3.12	5.13	7.69	4.04	8.33	0.00	0.00	0.00	4.35	5.17	5.77	0.00	0.00	0.00	0.00	4.26	7.14	0.00	5.41	0.00	5.00	5.17	6.25	3.57	4.65	11.11	2.44	0.00	4.00	0.00	1.92	0.00	4.67	4.67	0.091243	0.663989
N	cassette	TPRA1	chr3	-	chr3:127294109-127294782;chr3:127294349-127294782;chr3:127294109-127295459;chr3:127294349-127295459	chr3:127294109-127294591,chr3:127294349-127294591;chr3:127294653-127295459,chr3:127294653-127294782		chr3:127294592-127294652			77.27	78.69	72.50	70.42	69.74	81.08	94.44	90.70	90.00	91.75	91.67	95.04	97.83	93.51	91.49	91.16	96.23	94.26	78.79	78.57	85.71	67.89	69.52	73.08	86.11	83.67	77.08	87.91	87.36	86.67	67.05	71.43	82.35	73.38	72.53	75.84	84.23	81.12	-3.11	0.396516	0.712028
K	intron_retention		chr1	+	chr1:112019490-112019955				chr1:112019489-112019490;chr1:112019955-112019956		21.67	22.47	35.71	18.18	26.92	NA	10.62	0.00	18.18	8.51	7.53	5.17	12.60	17.65	NA	13.04	8.82	8.82	35.29	22.50	18.75	20.00	37.50	20.00	12.00	36.84	23.88	22.22	29.75	11.76	19.05	22.03	34.48	17.54	33.03	15.38	17.54	20.36	2.82	0.604788	1.000000
N	alternative_acceptor	USP15	chr12	+	chr12:62785667-62786051	chr12:62785667-62786035		chr12:62786036-62786051	chr12:62786051-62786052		5.48	0.00	5.26	0.00	0.00	NA	0.00	1.32	3.70	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	8.33	2.67	6.45	3.57	3.33	3.92	NA	1.20	4.08	0.00	0.00	1.82	5.88	3.61	0.00	6.45	4.17	4.17	0.00	2.02	2.02	0.509003	0.799049
K	intron_retention	SH3BP2	chr4	+	chr4:2826924-2828956				chr4:2826923-2826924;chr4:2828956-2828957		3.23	9.52	12.90	25.00	12.50	NA	3.61	3.70	0.00	0.88	2.11	0.00	2.27	1.85	2.22	0.93	0.81	0.00	8.33	5.88	15.00	7.69	14.29	8.16	13.33	9.38	8.33	8.51	14.89	5.56	0.00	0.00	NA	8.00	9.76	7.02	8.33	3.46	-4.87	0.963258	1.000000
K	jcn_only_AA	THOC2	chrX	-	chrX:122744809-122745290	chrX:122744815-122745290		chrX:122744809-122744814	chrX:122744808-122744809		85.71	80.00	79.31	NA	81.82	81.82	81.82	85.71	93.33	NA	80.00	80.00	92.59	81.82	83.33	85.71	92.86	92.86	NA	94.44	90.91	92.86	79.31	88.24	NA	100.00	83.33	88.24	81.82	100.00	84.21	88.89	84.21	82.61	87.50	89.29	83.01	85.71	2.70	0.347956	0.663989
N	alternative_acceptor	RNH1	chr11	-	chr11:499129-499828;chr11:499186-499828	chr11:499601-499828		chr11:499129-499185;chr11:499186-499600	chr11:499128-499129;chr11:499185-499186		5.48	2.19	7.50	3.37	3.11	3.39	1.71	1.69	2.22	0.00	0.54	0.00	2.09	1.16	3.57	1.95	1.27	0.00	2.73	3.28	3.53	5.26	3.49	4.00	7.00	7.02	10.00	3.28	3.88	3.64	5.56	8.93	5.22	5.03	4.71	4.37	2.46	4.38	1.92	0.684837	0.881289
N	cassette	NFAM1	chr22	-	chr22:42793963-42807412	chr22:42793963-42805440;chr22:42805554-42807412		chr22:42805441-42805553			86.67	100.00	100.00	NA	NA	NA	95.59	100.00	93.22	91.30	93.85	100.00	100.00	100.00	93.02	100.00	91.07	81.82	NA	100.00	NA	NA	89.47	NA	100.00	84.62	94.44	NA	100.00	NA	NA	88.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.267872	0.709176
K	cassette	TCF25	chr16	+	chr16:89940268-89949758	chr16:89940268-89944868;chr16:89945036-89949758		chr16:89944869-89945035			7.84	21.88	7.69	0.00	6.06	NA	1.04	1.54	1.54	5.19	1.74	0.00	2.00	1.61	1.59	2.53	1.79	1.92	6.25	7.41	4.17	3.23	5.33	12.50	6.25	6.67	4.55	6.06	7.89	3.45	8.57	12.50	0.00	10.42	10.20	9.72	4.12	7.04	2.92	0.864744	0.952602
N	cassette	FAM195A	chr16	+	chr16:692250-698119;chr16:697545-698119	chr16:697545-697782,chr16:692250-697782;chr16:697885-698119		chr16:697783-697884			100.00	97.63	100.00	96.00	98.66	96.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.53	100.00	100.00	100.00	95.33	91.18	100.00	NA	100.00	97.14	96.34	98.04	88.89	100.00	93.50	95.16	96.20	100.00	98.81	100.00	1.19	0.904120	0.971172
N	jcn_only_AD	ENY2	chr8	+	chr8:110345993-110348356;chr8:110346636-110348356	chr8:110346632-110348356		chr8:110345993-110346631;chr8:110346632-110346635	chr8:110345992-110345993;chr8:110346631-110346632		100.00	100.00	96.97	100.00	100.00	100.00	91.43	100.00	100.00	100.00	93.94	91.89	91.67	96.67	94.74	95.24	95.24	97.14	100.00	94.29	93.75	90.91	100.00	95.45	100.00	100.00	100.00	91.30	100.00	100.00	96.97	100.00	100.00	90.48	100.00	100.00	100.00	98.48	-1.52	0.702612	0.845095
K	alternative_donor	ABTB1	chr3	+	chr3:127392452-127393233;chr3:127391925-127393233	chr3:127392227-127393233		chr3:127391925-127392226;chr3:127392227-127392451	chr3:127391924-127391925;chr3:127392226-127392227		0.00	0.00	7.41	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	2.44	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention		chr20	+	chr20:60881791-60882426				chr20:60881790-60881791;chr20:60882426-60882427		3.33	1.39	2.68	2.80	1.34	1.63	0.00	0.00	0.00	0.60	0.00	0.00	2.67	0.00	0.00	0.45	0.00	0.00	1.83	3.54	1.60	1.87	2.94	2.08	1.67	3.51	1.06	1.72	0.80	3.97	5.56	6.41	3.96	4.76	5.71	3.87	1.75	3.42	1.67	0.821637	1.000000
K	alternative_first_exon	EIF5A	chr17	+	chr17:7212435-7212933,chr17:7211453-7212933,chr17:7212824-7212933,chr17:7210433-7212933,chr17:7210670-7212933,chr17:7212312-7212933;chr17:7211072-7212933;chr17:7211433-7212933;chr17:7211895-7212933	chr17:7210435-7212933	chr17:7210692-7211071;chr17:7211293-7211432;chr17:7211690-7211894	chr17:7210318-7210434			3.77	6.56	10.84	2.56	4.00	7.69	4.55	2.22	3.25	2.26	4.70	1.87	4.05	2.15	5.65	1.56	2.45	3.33	5.56	2.86	3.57	3.85	6.67	3.96	NA	1.96	3.45	2.13	4.39	0.80	5.08	4.00	2.94	6.45	5.15	4.29	4.55	2.54	-2.01	0.061443	0.200066
N	alternative_acceptor	TYMP	chr22	-	chr22:50968161-50968332;chr22:50968045-50968332;chr22:50968177-50968332;chr22:50968149-50968332;chr22:50966175-50968332	chr22:50968184-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		2.75	3.08	3.02	4.35	2.99	5.45	3.95	4.80	5.47	5.88	7.06	7.63	3.47	5.58	5.99	6.13	6.33	5.37	2.56	2.82	3.85	6.21	6.53	5.15	3.37	3.27	3.81	5.53	3.64	4.23	3.57	3.17	3.90	2.45	3.85	4.00	3.42	3.42	0.00	0.451422	0.756508
K	alternative_acceptor	MGRN1	chr16	+	chr16:4733934-4738796	chr16:4733934-4736259		chr16:4736260-4738796	chr16:4738796-4738797		16.67	25.00	13.64	NA	18.18	22.22	5.26	8.57	4.44	10.53	8.16	12.90	9.30	7.32	3.92	6.82	6.25	8.00	20.00	16.67	8.33	25.00	25.49	48.00	25.00	17.24	16.00	16.67	20.00	17.39	15.79	12.82	14.29	45.16	33.33	41.94	17.14	16.23	-0.91	0.492177	0.791230
K	jcn_only_AD	NDUFB11	chrX	-	chrX:47001840-47002012	chrX:47001840-47001982		chrX:47001983-47002012	chrX:47002012-47002013		20.79	18.28	19.78	17.15	18.99	16.25	23.77	25.88	16.88	21.56	19.76	19.10	20.52	19.48	15.34	24.07	22.18	25.14	18.39	19.81	18.01	21.71	18.26	15.67	17.03	19.49	18.45	23.20	21.63	20.52	17.27	17.89	19.93	19.49	21.54	17.99	19.16	19.65	0.49	0.612625	0.809875
N	jcn_only_AA	TYMP	chr22	-	chr22:50968161-50968332;chr22:50968045-50968332;chr22:50968177-50968332;chr22:50968184-50968332;chr22:50966175-50968332	chr22:50968149-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		68.68	59.50	65.10	73.15	70.45	66.86	81.92	79.25	79.71	79.03	71.13	77.54	78.52	77.18	77.50	77.85	76.89	78.04	65.00	69.95	75.44	68.45	67.77	67.55	67.24	69.40	70.27	70.54	71.50	73.49	66.99	69.99	63.87	67.36	63.01	64.55	66.12	69.68	3.56	0.554484	0.787374
K	alternative_donor	NFKBIL1	chr6	+	chr6:31525582-31525798	chr6:31525627-31525798		chr6:31525582-31525626	chr6:31525581-31525582		40.00	59.38	54.55	NA	60.87	69.23	62.50	NA	54.55	NA	54.55	NA	53.85	72.73	NA	NA	66.67	NA	48.00	NA	57.14	NA	58.33	NA	57.89	45.45	53.85	NA	66.67	NA	66.67	50.00	66.67	50.00	72.73	63.64	58.64	56.06	-2.58	0.838554	0.953887
N	alternative_acceptor		chr11	+	chr11:1008136-1009163;chr11:1008136-1009027;chr11:1008136-1008805;chr11:1008136-1008830	chr11:1008136-1009099		chr11:1008806-1008830;chr11:1008831-1009027;chr11:1009028-1009099;chr11:1009100-1009163	chr11:1008830-1008831;chr11:1009027-1009028;chr11:1009099-1009100;chr11:1009163-1009164		93.94	90.67	85.71	100.00	93.27	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	98.63	NA	95.10	96.43	95.83	100.00	94.44	100.00	95.40	100.00	96.43	100.00	96.94	100.00	100.00	87.50	94.95	91.89	95.38	92.31	95.25	100.00	4.75	0.217829	0.671511
K	intron_retention	SLC25A11	chr17	-	chr17:4842271-4842354				chr17:4842270-4842271;chr17:4842354-4842355		8.11	9.30	7.69	8.33	8.00	NA	0.00	0.00	0.00	0.00	1.23	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	4.00	4.65	6.25	7.69	9.52	NA	13.04	2.17	0.00	5.00	0.00	15.79	6.52	6.25	4.17	6.06	4.76	1.87	6.05	4.18	0.852621	1.000000
K	intron_retention	LILRB5	chr19	-	chr19:54757929-54758227				chr19:54757928-54757929;chr19:54758227-54758228		6.90	13.64	NA	0.00	8.82	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.85	NA	0.00	0.00	0.00	0.00	4.44	NA	0.00	11.48	4.17	2.78	5.88	7.69	7.14	9.72	2.56	4.76	NA	0.00	6.90	12.00	4.17	0.00	4.60	4.60	0.806513	1.000000
N	alternative_donor	CTBS	chr1	-	chr1:85020883-85028939	chr1:85020883-85028927		chr1:85028928-85028939	chr1:85028939-85028940		0.00	3.12	1.10	0.00	0.00	0.00	0.00	2.56	5.77	0.00	3.90	3.17	0.00	3.57	1.96	0.00	1.33	2.04	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	3.03	0.00	0.00	0.00	0.00	0.00	3.23	2.00	0.00	0.00	0.00	0.665679	0.851000
K	jcn_only_AA	MRPS16	chr10	-	chr10:75011782-75012227	chr10:75011796-75012227		chr10:75011782-75011795	chr10:75011781-75011782		0.00	14.71	7.14	0.00	5.13	0.00	3.33	0.00	3.33	1.89	2.94	3.45	2.25	0.00	0.00	3.12	0.00	0.00	4.00	0.00	0.00	0.00	4.26	4.76	0.00	0.00	7.69	6.90	6.38	0.00	0.00	0.00	4.35	0.00	0.00	0.00	3.67	0.00	-3.67	0.070963	0.663989
K	intron_retention	CCDC130	chr19	+	chr19:13873252-13873403				chr19:13873251-13873252;chr19:13873403-13873404		14.58	6.82	12.28	6.45	8.93	12.00	0.00	0.00	3.85	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	13.33	16.22	6.94	13.04	8.96	11.54	0.00	7.14	11.48	3.12	4.35	9.52	11.63	10.13	7.69	8.11	8.51	10.64	3.41	9.38	5.97	0.718617	1.000000
N	jcn_only_AA		chr11	+	chr11:67058993-67059090	chr11:67058993-67059073		chr11:67059074-67059090	chr11:67059090-67059091		100.00	100.00	97.56	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	96.30	92.31	93.94	NA	97.83	NA	100.00	88.24	98.65	NA	100.00	NA	93.75	100.00	93.75	100.00	100.00	100.00	100.00	96.88	-3.12	0.293729	0.663989
N	cassette	AGAP3	chr7	+	chr7:150815720-150820880;chr7:150815720-150819811	chr7:150815720-150817073;chr7:150817233-150819811,chr7:150817233-150820880		chr7:150817074-150817232			93.44	100.00	94.29	100.00	98.57	NA	100.00	100.00	100.00	99.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	96.00	95.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.183312	0.709176
K	intron_retention		chr11	-	chr11:62446216-62446336				chr11:62446215-62446216;chr11:62446336-62446337		8.49	4.42	5.94	3.08	4.79	6.10	0.00	0.00	4.00	1.10	0.93	1.45	0.00	2.47	3.70	1.85	0.85	1.18	4.59	9.86	4.96	5.45	6.15	10.42	2.07	1.37	6.73	3.45	3.00	3.03	12.90	7.04	6.92	6.94	4.55	6.93	3.25	5.48	2.24	0.440765	1.000000
K	cassette	SAMHD1	chr20	-	chr20:35526363-35532559	chr20:35526363-35526842;chr20:35526948-35532559		chr20:35526843-35526947			96.25	94.12	97.52	NA	100.00	100.00	97.69	96.00	96.74	97.54	95.29	97.88	96.89	98.92	97.62	96.60	96.23	96.11	100.00	97.00	100.00	94.44	97.98	97.67	100.00	94.30	93.46	96.49	97.26	95.83	95.83	97.20	93.88	98.60	98.78	97.92	97.29	96.12	-1.16	0.588784	0.844083
N	jcn_only_AD	UBL5	chr19	+	chr19:9938644-9939002;chr19:9938741-9939002	chr19:9938661-9939002		chr19:9938644-9938660;chr19:9938661-9938740	chr19:9938643-9938644;chr19:9938660-9938661		92.03	93.26	92.19	89.12	91.30	93.52	90.74	90.88	87.85	89.68	92.33	91.62	91.83	90.68	88.26	89.76	90.91	91.44	91.19	92.94	88.49	92.43	93.89	92.87	91.70	90.88	89.02	90.75	92.07	92.07	91.75	91.90	91.79	91.00	90.97	91.85	91.75	91.31	-0.43	0.661861	0.825213
N	alternative_donor	C1QC	chr1	+	chr1:22970231-22970503;chr1:22970380-22970503;chr1:22965709-22970503;chr1:22965655-22970503	chr1:22970208-22970503		chr1:22965655-22965708;chr1:22965709-22970207;chr1:22970208-22970230;chr1:22970231-22970379	chr1:22965654-22965655;chr1:22965708-22965709;chr1:22970207-22970208;chr1:22970230-22970231		89.35	91.96	89.66	92.40	90.75	92.15	86.80	85.36	87.23	89.83	89.83	89.14	85.30	85.02	88.09	89.35	88.86	90.00	92.53	86.70	90.43	92.31	90.11	91.47	93.93	85.35	87.46	90.36	90.77	90.93	90.30	93.82	92.54	91.01	91.18	91.77	92.25	86.03	-6.22	0.074363	0.461916
N	jcn_only_AD	STX8	chr17	-	chr17:9281971-9341113;chr17:9281971-9294467	chr17:9281971-9395145		chr17:9294468-9341113;chr17:9341114-9395145	chr17:9341113-9341114;chr17:9395145-9395146		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	95.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	94.87	98.25	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AA	VASP	chr19	+	chr19:46025840-46025949;chr19:46025840-46025975	chr19:46025840-46025978		chr19:46025950-46025975;chr19:46025976-46025978	chr19:46025975-46025976;chr19:46025978-46025979		2.57	4.17	2.14	1.61	2.52	0.00	6.10	1.27	4.17	4.27	4.35	4.80	2.00	2.65	0.00	5.79	3.98	2.75	0.00	3.93	2.68	3.50	1.46	2.33	0.00	1.95	1.09	1.55	3.88	1.56	2.17	1.95	2.70	1.82	1.00	2.41	2.35	2.37	0.02	0.947219	0.981281
N	alternative_acceptor	CD36	chr7	+	chr7:80303464-80305699;chr7:80303464-80305044;chr7:80303464-80305423	chr7:80303464-80305455		chr7:80305045-80305423;chr7:80305424-80305455;chr7:80305456-80305699	chr7:80305423-80305424;chr7:80305455-80305456;chr7:80305699-80305700		0.00	2.70	0.00	NA	0.00	NA	0.00	0.00	0.00	0.75	0.95	0.00	1.67	0.00	NA	0.00	1.74	2.00	0.00	NA	2.15	3.37	4.39	5.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.18	1.96	1.88	0.00	0.00	0.00	0.189200	0.660713
K	intron_retention		chr5	-	chr5:176729180-176729397				chr5:176729179-176729180;chr5:176729397-176729398		40.35	44.64	42.31	51.85	47.17	33.67	4.55	9.38	4.44	NA	5.00	0.00	0.00	6.49	9.68	NA	12.50	0.00	37.65	39.09	30.00	NA	36.96	66.67	44.90	34.09	50.38	58.97	43.75	44.83	29.79	37.12	36.36	29.63	50.00	44.12	37.00	31.94	-5.06	0.919300	1.000000
K	intron_retention	RCE1	chr11	+	chr11:66613034-66613330				chr11:66613033-66613034;chr11:66613330-66613331		0.00	16.00	16.00	7.14	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.00	15.38	12.50	14.29	8.82	0.00	NA	0.00	5.00	18.75	11.11	0.00	0.00	12.00	12.50	3.12	11.11	8.33	10.00	0.00	-10.00	0.809823	1.000000
N	alternative_acceptor	CCDC28A,ZDHHC14	chr6	+	chr6:139109526-139113885	chr6:139109526-139113829		chr6:139113830-139113885	chr6:139113885-139113886		2.00	0.00	2.56	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	3.45	0.00	0.00	0.00	5.41	1.52	2.38	3.85	2.63	0.00	0.00	1.00	1.00	0.347591	0.709013
K	jcn_only_AA	TMEM219	chr16	+	chr16:29973454-29974430	chr16:29973454-29974427		chr16:29974428-29974430	chr16:29974430-29974431		40.91	32.00	46.67	52.63	38.60	38.89	48.19	54.72	55.10	41.38	48.67	56.25	48.19	56.52	58.49	41.94	52.22	51.28	27.91	40.38	37.14	50.00	39.34	41.18	51.72	44.90	34.88	59.09	51.16	45.71	38.33	37.25	37.50	37.50	33.33	36.36	42.84	42.91	0.06	0.349354	0.663989
K	intron_retention	AP003419.11,POLD4	chr11	-	chr11:67120274-67120458				chr11:67120273-67120274;chr11:67120458-67120459		5.38	1.33	6.43	5.08	3.65	5.43	1.33	3.17	3.72	3.49	3.60	2.94	2.68	2.68	3.63	2.56	1.97	0.00	2.81	1.90	2.65	4.55	5.93	4.00	3.29	3.67	5.12	2.08	4.17	4.88	4.90	6.70	3.14	4.48	5.62	8.86	2.75	3.42	0.67	0.302563	1.000000
N	alternative_acceptor	SERPINB1	chr6	-	chr6:2829641-2836089;chr6:2818205-2836089	chr6:2834247-2836089		chr6:2818205-2829640;chr6:2829641-2834246	chr6:2818204-2818205;chr6:2829640-2829641		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.12	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.885374	0.961240
K	jcn_only_AA	CTDNEP1,RP1-4G17.5	chr17	-	chr17:7150497-7150595	chr17:7150502-7150595		chr17:7150497-7150501	chr17:7150496-7150497		96.49	100.00	100.00	100.00	95.24	NA	100.00	100.00	100.00	100.00	97.91	100.00	97.76	100.00	100.00	100.00	98.84	98.25	100.00	97.67	100.00	100.00	100.00	96.77	100.00	100.00	97.73	94.74	99.05	100.00	94.74	94.83	96.67	100.00	95.24	100.00	100.00	98.84	-1.16	0.421573	0.691465
K	jcn_only_AA	TECR	chr19	+	chr19:14673388-14673952;chr19:14673388-14674017	chr19:14673388-14673985		chr19:14673953-14673985;chr19:14673986-14674017	chr19:14673985-14673986;chr19:14674017-14674018		5.41	1.22	5.56	9.09	4.84	0.00	7.03	6.25	6.25	7.07	7.52	4.24	6.60	8.70	3.03	8.33	8.96	6.82	5.13	8.33	8.11	4.05	2.69	3.23	0.00	0.00	4.00	4.12	5.99	3.76	0.00	9.76	5.41	9.52	6.67	7.97	5.27	5.83	0.56	0.788353	0.908316
K	intron_retention		chr9	-	chr9:123538505-123540628				chr9:123538504-123538505;chr9:123540628-123540629		9.09	10.00	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	NA	3.33	0.00	5.88	0.00	7.69	0.00	0.00	6.45	0.00	3.23	0.00	6.67	5.26	0.00	5.88	5.00	8.82	0.00	1.67	1.67	0.877926	1.000000
K	intron_retention	TMEM179B	chr11	+	chr11:62555000-62556494				chr11:62554999-62555000;chr11:62556494-62556495		0.00	0.00	7.35	0.00	2.78	NA	1.69	2.63	1.20	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	2.44	3.23	0.00	0.00	3.85	NA	0.00	5.56	0.00	3.33	0.00	0.00	3.51	4.00	3.45	7.41	4.55	0.00	1.22	1.22	0.559648	1.000000
K	alternative_last_exon	COA4	chr11	-	chr11:73584440-73587801	chr11:73587621-73587801	chr11:73583712-73584439	chr11:73587524-73587620			0.00	0.00	4.00	0.00	0.00	0.00	3.08	0.00	2.08	9.86	2.53	5.26	1.32	0.00	5.97	5.22	6.32	9.09	0.00	7.69	1.82	2.27	3.70	0.00	0.00	NA	0.00	9.09	1.56	2.56	0.00	3.45	0.00	3.70	1.96	0.00	0.00	0.00	0.00	0.641341	0.774457
N	jcn_only_AA	AP3S2,C15orf38-AP3S2	chr15	-	chr15:90395714-90414706;chr15:90404330-90414706;chr15:90408926-90414706	chr15:90380955-90414706		chr15:90380955-90395713;chr15:90395714-90404329;chr15:90404330-90408925	chr15:90380954-90380955;chr15:90395713-90395714;chr15:90404329-90404330		100.00	100.00	97.96	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	94.74	100.00	NA	100.00	92.86	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr2	+	chr2:135926320-135927303				chr2:135926319-135926320;chr2:135927303-135927304		92.68	100.00	90.62	91.67	90.00	70.83	100.00	100.00	100.00	83.33	93.33	90.00	100.00	100.00	96.00	85.71	88.24	100.00	86.67	92.86	93.33	84.21	96.15	75.86	100.00	100.00	96.55	100.00	94.12	82.86	100.00	95.65	100.00	92.31	96.00	93.48	100.00	100.00	0.00	0.902197	1.000000
N	cassette	CLASRP	chr19	+	chr19:45570853-45571677	chr19:45570853-45571272;chr19:45571313-45571677		chr19:45571273-45571312			100.00	95.70	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.43	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	98.21	88.46	100.00	100.00	100.00	96.43	100.00	3.57	0.454762	0.754921
N	jcn_only_AA	SBNO2	chr19	-	chr19:1147387-1149367	chr19:1147420-1149367		chr19:1147387-1147419	chr19:1147386-1147387		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.50	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	NA	100.00	100.00	98.57	100.00	100.00	0.00	0.363217	0.663989
N	coord_cassette	DAZAP1	chr19	+	chr19:1417540-1421146	chr19:1417540-1418202;chr19:1418370-1418664;chr19:1418731-1421146		chr19:1418203-1418369;chr19:1418665-1418730			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AA		chr20	+	chr20:409234-409609;chr20:409234-409571;chr20:409234-409606	chr20:409234-409594		chr20:409572-409594;chr20:409595-409606;chr20:409607-409609	chr20:409594-409595;chr20:409606-409607;chr20:409609-409610		98.65	100.00	100.00	100.00	100.00	100.00	100.00	97.44	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	83.33	100.00	100.00	89.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	0.00	0.570229	0.796382
K	cassette	ZNF385A	chr12	-	chr12:54765500-54767756	chr12:54765500-54766677;chr12:54766816-54767756		chr12:54766678-54766815			0.90	1.89	1.12	NA	0.00	NA	0.42	0.99	0.00	0.00	0.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	9.09	2.00	1.54	0.00	0.00	0.00	0.00	1.72	0.00	0.00	1.59	0.00	0.21	0.45	0.24	0.440284	0.745263
N	alternative_acceptor	PLXND1	chr3	-	chr3:129275272-129275459;chr3:129275314-129275459;chr3:129275318-129275459	chr3:129274387-129275459		chr3:129274387-129275271;chr3:129275272-129275313;chr3:129275314-129275317	chr3:129274386-129274387;chr3:129275271-129275272;chr3:129275313-129275314		5.00	7.02	5.81	8.53	8.41	15.33	0.46	0.96	1.36	0.89	0.93	0.00	0.00	0.00	1.55	0.00	0.73	0.00	8.10	5.14	5.91	8.26	6.80	6.30	7.02	1.59	2.67	3.91	2.86	2.45	9.26	7.51	17.18	7.47	6.16	7.35	7.02	3.29	-3.72	0.339578	0.709013
K	intron_retention		chr3	+	chr3:52525530-52525887				chr3:52525529-52525530;chr3:52525887-52525888		9.42	8.08	10.08	NA	5.83	NA	0.86	0.00	0.00	0.00	2.41	NA	0.85	0.00	0.00	0.00	1.87	NA	5.08	11.94	10.53	11.76	9.15	0.00	3.28	5.00	8.85	5.88	4.17	NA	15.38	12.28	11.94	5.56	10.00	0.00	4.18	7.21	3.03	0.787385	1.000000
K	alternative_acceptor	FLII	chr17	-	chr17:18155128-18155312	chr17:18155131-18155312		chr17:18155128-18155130	chr17:18155127-18155128		28.85	20.00	29.41	NA	NA	NA	38.37	40.26	35.94	39.77	35.29	39.47	36.63	34.04	38.55	42.17	36.84	43.24	NA	36.59	20.00	30.77	28.57	33.33	23.08	25.93	27.66	35.48	30.77	42.86	31.25	27.78	NA	22.39	25.00	30.00	29.86	32.64	2.79	0.552850	0.824386
K	jcn_only_AD	LENG8	chr19	+	chr19:54960489-54962466;chr19:54960923-54962466	chr19:54960485-54962466		chr19:54960485-54960488;chr19:54960489-54960922	chr19:54960484-54960485;chr19:54960488-54960489		50.00	100.00	59.62	NA	NA	NA	60.87	52.63	69.57	50.00	58.33	NA	76.92	70.59	70.45	76.19	65.52	NA	NA	56.00	NA	60.00	66.67	78.57	65.52	68.18	61.54	40.00	75.00	NA	NA	65.52	NA	71.43	60.00	70.37	71.22	56.00	-15.22	0.160657	0.657607
K	jcn_only_AA	RBCK1,SNRPB2	chr20	+	chr20:389424-390524;chr20:389424-390527	chr20:389424-390473		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		5.00	0.00	9.76	NA	0.00	0.00	0.00	2.31	4.76	7.32	6.82	5.94	6.00	1.69	3.05	11.36	4.44	7.02	0.00	4.44	6.06	6.67	4.44	8.70	0.00	1.89	0.00	2.78	0.00	3.25	5.17	0.00	0.00	0.00	0.00	4.35	0.00	3.38	3.38	0.075922	0.663989
N	alternative_acceptor	EPN1	chr19	+	chr19:56186802-56189872;chr19:56186802-56189892	chr19:56186802-56188411		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		2.70	3.33	3.03	NA	0.00	NA	3.03	2.44	0.00	0.00	1.32	0.00	2.56	0.00	3.12	3.57	1.10	0.00	NA	5.26	0.00	0.00	2.44	NA	5.88	2.44	3.23	0.00	3.33	NA	10.00	10.71	23.08	0.00	4.76	0.00	3.33	2.57	-0.76	0.406712	0.720290
K	intron_retention	NEMF	chr14	-	chr14:50251854-50251937				chr14:50251853-50251854;chr14:50251937-50251938		0.00	0.00	5.13	0.00	5.56	NA	0.00	0.00	0.00	0.00	0.00	NA	3.12	0.00	0.00	0.00	2.44	0.00	NA	8.70	0.00	8.33	3.03	0.00	NA	0.00	0.00	0.00	6.67	0.00	4.00	5.26	6.25	2.50	8.33	14.29	1.56	0.00	-1.56	0.895961	1.000000
N	jcn_only_AA	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365092-62366056;chr20:62365092-62368885	chr20:62365092-62365996					0.00	0.00	2.50	7.32	2.78	4.84	0.00	0.00	0.00	4.17	0.00	0.00	0.00	9.09	0.00	6.98	0.00	4.17	0.00	0.00	2.63	0.00	0.00	3.03	0.00	3.33	2.04	4.88	0.00	6.78	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.227594	0.663989
N	alternative_acceptor	PPP3CC,WWP1	chr8	+	chr8:22397012-22398127	chr8:22397012-22397244		chr8:22397245-22398127	chr8:22398127-22398128		14.89	10.00	21.74	5.56	9.68	3.37	0.00	2.90	1.54	2.50	0.00	2.56	NA	2.41	4.17	4.44	0.00	1.89	9.09	11.11	8.20	14.29	16.00	15.62	0.00	14.29	14.29	10.00	10.00	7.95	9.30	10.59	20.00	17.86	18.52	11.40	9.09	10.21	1.12	0.767903	0.913895
K	intron_retention	CHKB,CHKB-CPT1B	chr22	-	chr22:51019983-51020177				chr22:51019982-51019983;chr22:51020177-51020178		44.26	25.00	47.69	40.00	42.86	NA	12.00	14.29	18.18	12.00	17.24	7.69	20.00	31.03	34.09	23.53	31.82	NA	18.75	38.10	28.00	52.63	46.67	43.48	47.83	29.69	45.45	40.74	55.56	47.83	40.35	36.76	44.00	43.59	42.50	41.51	22.50	34.56	12.06	0.658437	1.000000
K	jcn_only_AA	NDUFA10	chr2	-	chr2:240946788-240957969	chr2:240954278-240957969					100.00	100.00	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	98.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	91.67	96.97	96.77	100.00	100.00	100.00	100.00	100.00	0.00	0.587378	0.809826
N	alternative_donor	PML	chr15	+	chr15:74326872-74335329;chr15:74330297-74335329;chr15:74326947-74335329	chr15:74333912-74335329		chr15:74326872-74326946;chr15:74326947-74330296;chr15:74330297-74333911	chr15:74326871-74326872;chr15:74326946-74326947;chr15:74330296-74330297		6.82	4.17	7.69	7.69	0.00	0.72	3.70	11.11	5.30	10.34	NA	18.52	4.76	8.84	10.53	10.71	7.69	39.62	0.00	8.74	2.94	NA	NA	23.94	0.00	8.09	3.23	8.93	NA	18.40	4.59	5.71	0.00	10.87	9.09	12.57	1.85	8.41	6.56	0.001084	0.090365
N	alternative_acceptor	SAMD4B	chr19	+	chr19:39873932-39874138;chr19:39873932-39874347;chr19:39873932-39875991	chr19:39873932-39875178		chr19:39874139-39874347;chr19:39874348-39875178;chr19:39875179-39875991	chr19:39874347-39874348;chr19:39875178-39875179;chr19:39875991-39875992		2.63	5.00	2.22	17.39	17.24	37.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	26.67	0.00	11.54	4.55	3.12	0.00	NA	2.22	2.63	3.57	3.33	3.33	3.70	2.78	NA	2.70	4.35	0.00	2.50	1.11	-1.39	0.383340	0.709013
N	alternative_acceptor	SCYL1	chr11	+	chr11:65305654-65305912;chr11:65305654-65305740	chr11:65305654-65305917		chr11:65305741-65305912;chr11:65305913-65305917	chr11:65305912-65305913;chr11:65305917-65305918		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	SKAP2	chr7	-	chr7:26709276-26709709;chr7:26708719-26709709;chr7:26708724-26709709	chr7:26709335-26709709		chr7:26708719-26708723;chr7:26708724-26709275;chr7:26709276-26709334	chr7:26708718-26708719;chr7:26708723-26708724;chr7:26709275-26709276		0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	RELA	chr11	-	chr11:65422112-65423158;chr11:65422472-65423158	chr11:65423067-65423158		chr11:65422112-65422471;chr11:65422472-65423066	chr11:65422111-65422112;chr11:65422471-65422472		5.81	6.25	8.94	3.23	3.12	12.00	1.37	0.71	0.66	0.49	1.11	0.31	1.41	0.56	1.22	0.50	0.92	0.30	9.09	5.26	5.88	5.81	5.06	4.19	0.00	4.15	5.16	2.13	2.00	2.37	7.23	8.13	6.67	6.54	5.81	5.19	3.83	4.71	0.88	0.926291	0.978996
N	cassette	SP100	chr2	+	chr2:231314426-231325976	chr2:231314426-231314886;chr2:231314971-231325976		chr2:231314887-231314970			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.68	95.83	94.03	97.16	100.00	96.43	98.21	95.40	97.62	95.00	100.00	100.00	97.44	100.00	95.56	98.56	100.00	100.00	96.05	92.42	100.00	93.79	100.00	98.25	100.00	100.00	97.33	98.40	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	RP11-342M1.3	chr1	-	chr1:43309122-43310181	chr1:43309122-43309930		chr1:43309931-43310181	chr1:43310181-43310182		78.95	100.00	92.31	NA	82.35	NA	83.33	50.00	69.23	NA	NA	NA	90.00	NA	NA	NA	NA	NA	NA	90.00	NA	NA	94.44	NA	NA	52.63	85.71	40.00	76.47	NA	NA	76.47	80.00	91.67	87.50	100.00	86.66	65.79	-20.87	0.128477	0.540946
K	intron_retention	RGL2	chr6	-	chr6:33263537-33263804				chr6:33263536-33263537;chr6:33263804-33263805		38.46	42.86	38.46	NA	25.00	NA	5.00	0.00	0.00	NA	7.14	NA	11.36	0.00	9.09	NA	8.33	NA	NA	29.41	NA	20.00	22.22	23.08	53.85	31.03	48.78	NA	25.93	NA	41.67	42.11	NA	26.32	34.04	33.33	27.11	30.22	3.11	0.982682	1.000000
K	cassette	TNRC18	chr7	-	chr7:5399201-5401527	chr7:5399201-5401224;chr7:5401354-5401527		chr7:5401225-5401353			80.00	73.68	75.86	NA	NA	NA	82.14	94.44	87.10	84.62	94.12	NA	88.64	90.91	92.86	NA	84.21	NA	NA	75.00	NA	NA	61.54	NA	58.33	84.62	86.67	NA	NA	NA	NA	84.62	NA	70.00	88.89	80.00	77.91	84.62	6.71	0.270096	0.709176
K	intron_retention	ZBTB48	chr1	+	chr1:6647693-6648119				chr1:6647692-6647693;chr1:6648119-6648120		0.00	2.33	3.45	4.55	3.39	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.00	1.59	0.00	2.22	NA	0.00	5.56	3.17	0.00	2.17	NA	11.11	3.12	1.96	0.00	0.00	0.00	0.00	4.00	4.00	0.466836	1.000000
K	intron_retention	COPA	chr1	-	chr1:160260007-160260281				chr1:160260006-160260007;chr1:160260281-160260282		0.95	7.81	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.00	0.00	0.00	1.43	2.52	0.00	0.69	0.72	0.52	0.00	0.00	0.00	0.780602	1.000000
K	intron_retention		chr3	-	chr3:38167373-38167652				chr3:38167372-38167373;chr3:38167652-38167653		18.60	31.96	37.50	30.00	38.46	33.33	2.06	1.96	2.78	0.00	0.00	1.92	3.03	0.00	4.23	0.00	0.00	0.00	32.56	31.25	12.88	31.82	33.33	22.22	29.79	26.32	23.53	28.57	35.85	30.56	30.77	32.47	28.89	36.11	32.61	26.98	29.34	22.46	-6.88	0.797104	1.000000
N	alternative_donor	SIPA1	chr11	+	chr11:65415083-65416732;chr11:65416647-65416732	chr11:65415130-65416732		chr11:65415083-65415129;chr11:65415130-65416646	chr11:65415082-65415083;chr11:65415129-65415130		91.94	93.75	90.00	NA	94.44	90.00	100.00	97.30	100.00	NA	95.00	NA	98.11	100.00	96.55	100.00	96.15	NA	88.24	96.30	88.71	NA	92.86	NA	96.61	95.74	94.74	90.91	87.50	NA	90.91	89.09	97.73	NA	90.00	90.91	97.17	96.02	-1.15	0.868785	0.967687
N	jcn_only_AD	HNRNPH3	chr10	+	chr10:70098400-70098896;chr10:70098445-70098896	chr10:70098427-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		0.00	0.00	4.30	0.00	0.00	0.00	2.22	5.71	0.00	0.00	2.88	3.42	0.00	0.00	0.00	2.26	1.24	0.00	0.00	2.50	0.00	0.00	1.11	0.00	0.00	0.00	0.00	0.00	1.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.366617	0.657607
N	alternative_donor	SNRPD3	chr22	+	chr22:24952026-24953624;chr22:24952197-24953624	chr22:24952040-24953624		chr22:24952026-24952039;chr22:24952040-24952196	chr22:24952025-24952026;chr22:24952039-24952040		95.00	97.94	100.00	100.00	92.00	100.00	96.39	100.00	100.00	95.12	100.00	100.00	91.38	100.00	100.00	94.69	94.96	94.74	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	96.67	91.67	100.00	100.00	100.00	100.00	94.44	100.00	98.97	100.00	1.03	0.365494	0.650093
N	jcn_only_AD	ITGB1BP1	chr2	-	chr2:9547035-9547558;chr2:9547035-9548241	chr2:9547035-9547577					93.22	93.81	94.74	91.60	95.32	89.22	80.62	91.11	88.24	78.76	80.89	73.17	92.31	97.83	97.14	86.27	88.61	86.05	94.56	91.49	82.39	92.31	90.32	88.33	90.53	91.30	96.55	93.42	92.08	90.79	90.00	94.44	89.50	89.25	93.07	85.42	91.42	91.39	-0.03	0.366784	0.657607
N	jcn_only_AA	CTBS	chr1	-	chr1:85029516-85031523	chr1:85029598-85031523		chr1:85029516-85029597	chr1:85029515-85029516		2.88	0.00	1.86	0.00	0.00	0.00	3.51	3.51	4.21	0.00	0.00	0.00	3.64	9.30	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	NA	1.96	0.00	0.00	0.00	0.00	1.04	3.01	0.00	0.00	0.00	2.22	0.00	2.42	2.42	0.322068	0.663989
K	jcn_only_AA	FKBP8	chr19	-	chr19:18649244-18650180	chr19:18649247-18650180		chr19:18649244-18649246	chr19:18649243-18649244		62.24	56.14	62.23	64.71	62.33	51.47	65.62	69.52	70.40	68.57	70.18	66.18	68.34	68.85	70.27	70.33	66.41	66.67	60.96	64.08	65.32	62.22	62.40	63.33	55.84	70.08	62.95	66.67	68.23	67.42	66.04	68.20	57.69	64.96	59.48	60.26	59.33	67.44	8.12	0.041046	0.663989
N	jcn_only_AA	HAUS4	chr14	-	chr14:23417223-23419522;chr14:23417175-23419522	chr14:23417243-23419522		chr14:23417175-23417222;chr14:23417223-23417242	chr14:23417174-23417175;chr14:23417222-23417223		4.44	0.00	2.04	NA	5.13	NA	2.27	0.00	1.43	0.00	2.38	0.00	0.91	0.00	0.00	0.00	2.53	0.00	0.00	5.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	7.41	7.69	0.00	0.00	0.00	0.363631	0.663989
N	alternative_donor	RPS8	chr1	+	chr1:45242412-45243285;chr1:45242447-45243285	chr1:45242387-45243285		chr1:45242387-45242411;chr1:45242412-45242446	chr1:45242386-45242387;chr1:45242411-45242412		15.15	9.29	8.78	6.57	8.46	7.41	7.60	4.44	8.00	9.58	9.05	7.56	7.13	8.00	8.24	7.69	8.59	7.33	7.27	13.75	8.61	11.57	10.61	16.13	4.56	11.76	8.78	9.17	9.90	9.03	17.05	16.88	13.65	9.92	9.63	9.17	7.43	12.75	5.32	0.169184	0.563271
K	intron_retention	AP1G2	chr14	-	chr14:24030641-24030720				chr14:24030640-24030641;chr14:24030720-24030721		25.81	8.82	30.30	NA	9.09	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	14.81	30.00	17.24	NA	18.75	NA	11.11	21.43	19.35	NA	22.22	8.33	18.18	20.93	18.75	36.36	26.09	21.74	9.96	19.80	9.84	0.559473	1.000000
N	jcn_only_AA		chr14	+	chr14:105223098-105225770;chr14:105223098-105225555	chr14:105223098-105225764		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	95.83	100.00	99.15	100.00	98.96	94.12	97.59	100.00	100.00	100.00	100.00	100.00	96.39	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.222107	0.663989
K	alternative_first_exon	RNF145	chr5	-	chr5:158630665-158634482;chr5:158630665-158634895	chr5:158630665-158636238	chr5:158634483-158634642;chr5:158634896-158635081	chr5:158636239-158636559			96.30	95.83	100.00	100.00	100.00	100.00	100.00	100.00	98.21	96.25	96.36	97.73	100.00	96.43	96.72	100.00	100.00	100.00	NA	92.31	94.12	93.33	100.00	100.00	100.00	96.43	100.00	90.91	100.00	92.31	100.00	96.67	100.00	100.00	100.00	97.37	100.00	96.43	-3.57	0.152742	0.348565
K	intron_retention	HNRNPA2B1	chr7	-	chr7:26230749-26232114				chr7:26230748-26230749;chr7:26232114-26232115		25.42	19.38	36.51	29.09	32.06	16.07	20.00	15.52	13.56	20.83	43.48	19.05	40.00	19.35	34.85	27.08	50.00	15.38	17.12	22.83	19.51	26.35	31.64	33.97	25.81	31.53	37.30	40.43	45.54	27.78	15.02	22.02	17.27	41.14	46.71	25.88	19.69	21.09	1.40	0.580408	1.000000
K	intron_retention	CCDC130	chr19	+	chr19:13869825-13869913				chr19:13869824-13869825;chr19:13869913-13869914		25.00	34.78	44.00	29.41	20.00	NA	NA	5.26	16.67	NA	23.08	NA	25.00	NA	21.74	15.00	15.38	NA	20.00	30.00	25.93	30.77	29.03	NA	18.75	23.08	34.78	30.77	30.00	22.22	46.67	30.43	26.32	16.67	28.12	16.13	25.00	25.00	0.00	0.741882	1.000000
N	alternative_acceptor	ABCC3	chr17	+	chr17:80014643-80014742	chr17:80014643-80014715		chr17:80014716-80014742	chr17:80014742-80014743		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	93.33	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.675162	0.880186
K	jcn_only_AD	DAB2	chr5	-	chr5:39390678-39392466	chr5:39390678-39392305		chr5:39392306-39392466	chr5:39392466-39392467		0.00	0.00	0.00	NA	0.00	NA	0.16	0.00	2.61	0.74	0.57	5.56	0.24	1.92	1.43	0.00	0.38	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.08	0.00	-0.08	0.527338	0.754861
N	alternative_donor	PCNXL3	chr11	+	chr11:65403275-65403644	chr11:65403503-65403644		chr11:65403275-65403502	chr11:65403274-65403275		47.62	16.67	28.00	NA	NA	NA	0.00	11.76	0.00	0.00	18.18	NA	0.00	0.00	12.00	NA	9.09	NA	18.18	23.53	36.36	NA	15.79	NA	NA	15.38	23.81	NA	20.00	NA	29.41	26.67	7.69	NA	28.57	26.32	7.69	19.46	11.77	0.138567	0.551111
N	jcn_only_AD	MGRN1	chr16	+	chr16:4714777-4715102	chr16:4714934-4715102		chr16:4714777-4714933	chr16:4714776-4714777		0.00	0.00	0.00	NA	NA	NA	6.38	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	2.27	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	cassette	DGKZ	chr11	+	chr11:46399780-46400443;chr11:46399780-46400752;chr11:46399780-46400540	chr11:46399780-46400006;chr11:46400051-46400752,chr11:46400051-46400540,chr11:46400051-46400443		chr11:46400007-46400050			94.34	97.79	93.85	100.00	93.33	92.31	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	92.68	97.22	100.00	100.00	97.87	100.00	100.00	100.00	98.59	100.00	100.00	NA	91.67	95.31	95.51	100.00	89.19	100.00	98.90	98.61	-0.29	0.814235	0.937502
K	intron_retention	RBM5	chr3	+	chr3:50151533-50151612				chr3:50151532-50151533;chr3:50151612-50151613		3.85	1.90	6.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.05	1.39	3.51	2.94	2.86	0.00	0.00	3.48	2.08	0.00	0.00	13.70	6.15	8.57	2.17	1.01	1.96	0.00	1.93	1.93	0.729471	1.000000
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3670350-3670608	chr20:3670384-3670608		chr20:3670350-3670383	chr20:3670349-3670350		9.29	10.42	10.00	NA	0.00	0.00	1.38	1.37	1.58	0.00	0.96	0.00	1.49	1.81	2.24	4.69	2.70	0.00	0.00	10.53	0.00	8.33	9.30	8.43	16.67	6.69	5.94	10.71	5.17	5.68	8.11	7.61	NA	13.51	13.04	11.56	1.49	7.40	5.91	0.934883	0.981619
N	jcn_only_AA	S100B	chr21	-	chr21:48022330-48024925	chr21:48022337-48024925		chr21:48022330-48022336	chr21:48022329-48022330		0.00	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	6.35	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	NA	NA	0.00	0.00	13.33	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	ABR	chr17	-	chr17:910553-912918	chr17:911420-912918		chr17:910553-911419	chr17:910552-910553		3.25	0.00	3.85	0.00	0.00	NA	0.00	0.00	1.09	0.00	0.44	0.00	0.90	0.87	1.35	0.82	0.90	0.00	NA	2.56	NA	4.88	3.36	2.33	0.00	3.23	3.66	2.44	3.12	0.00	3.77	5.00	NA	4.07	3.45	2.54	0.00	2.90	2.90	0.019026	0.517395
K	alternative_last_exon	RNF149	chr2	-	chr2:101891158-101898320,chr2:101893764-101898320,chr2:101889558-101898320,chr2:101891201-101898320;chr2:101889804-101898320	chr2:101893744-101898320	chr2:101889589-101889803	chr2:101892553-101893743			88.35	89.06	88.26	98.91	90.30	97.10	98.33	97.57	96.18	96.34	98.59	97.71	97.73	97.99	96.26	96.15	95.16	96.75	93.89	93.09	88.94	96.74	81.98	94.04	94.79	90.73	88.86	89.77	97.80	93.53	95.24	89.49	88.38	90.30	84.44	90.72	94.34	94.16	-0.18	0.955969	0.972989
K	jcn_only_AD	CCDC12	chr3	-	chr3:46982556-47007473;chr3:46982556-47017842	chr3:46982556-47018126					100.00	97.44	91.67	100.00	98.29	98.98	100.00	100.00	100.00	98.89	100.00	100.00	97.22	100.00	100.00	99.25	98.75	100.00	98.14	96.88	97.14	100.00	98.23	100.00	100.00	100.00	100.00	100.00	97.98	100.00	100.00	100.00	97.04	100.00	96.92	97.10	97.79	100.00	2.21	0.154681	0.657607
K	intron_retention		chr8	+	chr8:145151398-145151486				chr8:145151397-145151398;chr8:145151486-145151487		2.56	1.88	2.54	2.63	1.33	1.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	7.02	4.10	1.28	1.42	2.33	0.00	0.00	0.00	0.00	0.00	0.00	10.81	8.49	5.50	1.06	0.00	1.48	0.47	1.28	0.81	0.622906	1.000000
K	intron_retention	GBF1	chr10	+	chr10:104140120-104140262				chr10:104140119-104140120;chr10:104140262-104140263		7.69	4.00	9.52	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.35	0.00	6.25	6.25	11.54	NA	0.00	6.67	7.14	7.14	12.50	12.00	11.11	0.00	6.45	9.38	8.11	0.00	2.17	2.17	0.951092	1.000000
K	intron_retention	TANGO2	chr22	+	chr22:20049207-20050860				chr22:20049206-20049207;chr22:20050860-20050861		20.00	21.43	14.29	NA	NA	NA	0.00	0.00	5.26	0.00	0.00	NA	1.92	5.88	0.00	0.00	0.00	0.00	NA	10.00	NA	NA	14.29	NA	61.54	5.88	NA	NA	12.50	NA	NA	5.00	NA	16.67	5.00	NA	11.68	5.88	-5.80	0.925755	1.000000
K	intron_retention	GBA2	chr9	-	chr9:35737937-35738033				chr9:35737936-35737937;chr9:35738033-35738034		22.58	13.89	26.42	NA	24.00	NA	10.00	9.09	0.00	NA	8.33	NA	10.53	0.00	6.67	9.52	14.29	NA	7.69	9.52	20.00	18.75	21.62	20.00	0.00	13.04	18.75	12.50	14.63	8.33	18.75	27.27	12.50	17.65	16.22	20.93	10.27	11.28	1.01	0.792609	1.000000
K	alternative_acceptor	MATR3,RAD17	chr5	+	chr5:138658657-138661024;chr5:138658657-138661128	chr5:138658657-138660984		chr5:138660985-138661024;chr5:138661025-138661128	chr5:138661024-138661025;chr5:138661128-138661129		5.71	0.00	5.49	4.00	6.15	0.00	12.90	14.29	13.16	9.18	10.21	7.92	10.48	20.75	11.28	7.58	8.85	4.55	0.00	8.11	7.50	5.49	7.87	4.67	0.00	9.52	9.52	8.20	6.00	6.12	5.71	4.96	4.17	5.45	5.96	4.79	2.08	8.81	6.73	0.100100	0.598353
K	intron_retention		chr2	-	chr2:27605096-27605342				chr2:27605095-27605096;chr2:27605342-27605343		6.00	3.61	3.45	5.41	1.20	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	1.45	2.86	0.00	2.70	1.89	0.00	1.27	0.00	9.38	6.12	7.50	1.33	1.49	1.89	0.00	1.35	1.35	0.768252	1.000000
K	cassette	ATG7	chr3	+	chr3:11406209-11468277	chr3:11406209-11421445;chr3:11421527-11468277		chr3:11421446-11421526			93.75	94.37	96.08	100.00	94.55	100.00	96.30	100.00	100.00	90.91	95.56	100.00	98.44	96.30	100.00	96.55	94.44	100.00	97.33	93.33	96.23	100.00	95.45	100.00	98.51	96.55	95.45	100.00	96.30	88.89	100.00	93.94	92.86	93.75	100.00	95.12	96.81	96.42	-0.39	0.819562	0.940840
N	alternative_donor	RNF135	chr17	+	chr17:29324350-29325679;chr17:29324617-29325679	chr17:29324681-29325679		chr17:29324350-29324616;chr17:29324617-29324680	chr17:29324349-29324350;chr17:29324616-29324617		4.12	1.79	4.35	NA	2.15	NA	0.00	4.41	7.27	0.00	1.00	NA	0.85	4.23	1.92	0.00	0.00	NA	1.89	4.55	0.00	NA	1.08	NA	0.00	7.83	2.70	0.00	1.19	NA	8.77	5.17	0.00	2.86	2.78	0.00	0.42	4.48	4.06	0.001227	0.093044
K	intron_retention		chr1	-	chr1:151026798-151027491				chr1:151026797-151026798;chr1:151027491-151027492		10.00	11.76	17.43	0.00	7.41	0.00	0.60	2.53	2.17	1.57	2.25	1.38	3.59	3.57	4.81	2.06	3.30	2.02	12.50	9.38	10.00	16.67	11.11	16.04	13.64	14.77	13.79	11.76	6.98	3.37	11.90	17.44	0.00	13.00	14.05	8.81	7.67	9.69	2.02	0.834518	1.000000
N	alternative_acceptor	CTSZ	chr20	-	chr20:57569225-57571693;chr20:57570815-57571693	chr20:57571118-57571693		chr20:57569225-57570814;chr20:57570815-57571117	chr20:57569224-57569225;chr20:57570814-57570815		9.81	6.00	8.62	5.95	4.67	7.47	0.48	1.08	0.82	0.89	0.65	0.59	0.27	0.68	1.69	0.77	0.92	0.34	2.74	4.74	2.22	5.37	3.34	6.22	4.12	2.79	4.07	3.00	2.75	2.94	4.26	5.82	2.81	3.16	3.13	4.50	2.78	3.52	0.75	0.494975	0.791230
K	intron_retention	TINF2	chr14	-	chr14:24709362-24709468				chr14:24709361-24709362;chr14:24709468-24709469		89.81	92.31	91.78	87.04	83.33	75.86	92.16	85.49	89.47	84.21	79.03	88.24	87.72	90.91	91.30	85.71	84.91	85.25	88.24	83.18	77.78	85.07	89.53	93.07	71.43	89.54	93.24	90.00	87.84	87.02	88.00	86.42	85.37	92.31	89.55	92.26	87.98	88.77	0.79	0.873833	1.000000
N	alternative_donor		chr16	-	chr16:67188863-67189002	chr16:67188863-67188998		chr16:67188999-67189002	chr16:67189002-67189003		100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	100.00	100.00	92.31	96.43	95.45	100.00	NA	100.00	100.00	92.86	91.30	100.00	84.62	92.86	NA	100.00	96.30	100.00	100.00	94.00	100.00	96.00	100.00	NA	NA	91.84	100.00	100.00	0.00	0.485699	0.744342
K	cassette	EIF3F	chr11	+	chr11:8009264-8013630	chr11:8009264-8013327;chr11:8013519-8013630		chr11:8013328-8013518			100.00	97.44	92.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.67	92.31	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.506607	0.788365
K	intron_retention	TMEM55B	chr14	-	chr14:20926862-20927364				chr14:20926861-20926862;chr14:20927364-20927365		6.45	14.89	7.35	5.00	7.69	NA	1.89	0.00	0.00	0.00	0.00	0.00	0.00	1.45	2.27	0.00	1.52	0.00	0.00	9.52	5.88	10.00	9.23	7.41	NA	9.26	5.48	8.33	8.33	0.00	12.50	12.50	9.09	8.00	8.70	7.55	1.89	7.86	5.97	0.965099	1.000000
K	intron_retention		chr9	-	chr9:35738630-35738748				chr9:35738629-35738630;chr9:35738748-35738749		53.85	55.56	57.78	69.23	75.00	100.00	7.69	14.29	16.67	NA	28.57	NA	16.67	5.88	29.41	20.00	31.58	NA	76.47	47.83	82.61	38.46	50.00	50.00	54.55	46.67	52.63	50.00	40.00	50.00	72.22	61.54	83.33	43.24	58.62	55.17	55.05	47.25	-7.80	0.938880	1.000000
N	alternative_donor	CNPY2,RP11-977G19.10	chr12	-	chr12:56709027-56709604;chr12:56709027-56709661	chr12:56709027-56709690		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		7.69	16.07	9.68	0.00	0.00	15.38	2.50	0.00	7.14	7.69	6.45	3.70	4.76	NA	2.56	6.67	3.57	0.00	10.34	0.00	10.00	0.00	10.00	13.33	0.00	0.00	12.12	0.00	6.67	0.00	19.05	0.00	8.33	0.00	17.39	11.11	6.54	0.00	-6.54	0.720114	0.885082
K	alternative_acceptor	G6PD	chrX	-	chrX:153762712-153763382	chrX:153762715-153763382		chrX:153762712-153762714	chrX:153762711-153762712		2.67	5.88	3.85	8.33	4.08	NA	5.30	4.48	5.26	4.03	5.80	5.62	4.04	7.03	7.04	5.76	6.67	3.03	0.00	2.63	2.25	3.70	4.11	1.61	0.00	3.76	3.81	3.12	5.00	2.13	3.88	2.78	2.94	2.73	2.70	4.55	3.49	3.82	0.33	0.419369	0.733210
N	cassette	DNMT1	chr19	-	chr19:10244378-10246411	chr19:10244378-10244892;chr19:10244984-10246411		chr19:10244893-10244983			90.74	96.59	95.65	93.33	89.04	NA	100.00	100.00	100.00	100.00	97.67	NA	100.00	100.00	91.67	93.88	100.00	NA	90.62	97.83	100.00	90.00	89.02	NA	100.00	86.36	82.35	100.00	95.31	NA	85.71	95.65	91.94	100.00	95.35	85.71	98.30	94.28	-4.01	0.366986	0.709176
K	intron_retention		chr14	-	chr14:24806152-24806291				chr14:24806151-24806152;chr14:24806291-24806292		7.55	0.00	5.88	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	3.77	0.00	NA	4.55	NA	0.00	0.00	0.00	NA	0.00	3.23	2.27	4.17	0.00	5.26	9.09	3.70	0.00	1.14	1.14	0.344940	1.000000
K	intron_retention	HMHA1	chr19	+	chr19:1084346-1085658				chr19:1084345-1084346;chr19:1085658-1085659		13.56	7.76	9.88	5.56	6.84	6.52	0.98	1.92	2.25	7.41	6.15	4.55	0.86	0.00	0.90	4.88	2.50	5.88	9.72	8.70	13.16	6.90	4.94	8.33	13.24	3.03	7.27	10.34	5.33	5.26	17.14	16.67	8.05	4.88	10.26	3.77	7.91	5.86	-2.04	0.988387	1.000000
N	alternative_donor	SMS	chrX	+	chrX:21985164-21985313;chrX:21959486-21985313	chrX:21958992-21985313		chrX:21958992-21959485;chrX:21959486-21985163	chrX:21958991-21958992;chrX:21959485-21959486		100.00	96.15	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.221403	0.595046
K	intron_retention	SLC39A13	chr11	+	chr11:47436461-47436610				chr11:47436460-47436461;chr11:47436610-47436611		4.17	1.85	6.67	8.70	9.09	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	2.70	0.00	3.03	NA	0.00	4.35	3.39	4.65	12.50	4.76	0.00	0.00	8.33	3.23	11.90	5.00	3.70	6.25	0.00	1.89	10.94	4.08	0.00	1.85	1.85	0.336337	1.000000
N	alternative_acceptor	MICAL1	chr6	-	chr6:109767105-109767338;chr6:109767066-109767338;chr6:109767156-109767338	chr6:109767079-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		1.64	0.00	3.51	0.00	0.00	5.88	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	6.67	0.00	0.00	NA	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	3.92	2.38	1.75	2.70	2.86	0.00	0.00	0.82	0.82	0.173872	0.660713
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160100331-160103505;chr6:160016237-160103505;chr6:160100398-160103505;chr6:160100367-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160101368-160103505;chr6:160100377-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160101320-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		30.85	28.57	8.33	22.87	25.00	9.74	NA	34.38	34.52	33.33	36.36	35.88	NA	30.77	13.95	33.70	36.36	61.32	22.73	30.85	24.36	32.50	18.18	5.88	18.18	13.08	16.95	31.21	30.77	28.37	27.62	9.68	23.81	11.62	10.10	16.89	23.27	30.81	7.54	0.255966	0.709013
N	alternative_acceptor		chr12	+	chr12:53421704-53421816	chr12:53421704-53421798		chr12:53421799-53421816	chr12:53421816-53421817		100.00	100.00	94.92	NA	100.00	NA	98.96	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	99.24	100.00	NA	90.91	100.00	94.74	96.88	94.29	NA	100.00	93.48	100.00	98.18	100.00	100.00	95.12	100.00	96.08	100.00	100.00	100.00	100.00	0.00	0.449427	0.755217
K	alternative_acceptor	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99955990-99956312;chr7:99955990-99956521	chr7:99955990-99956555		chr7:99956313-99956521;chr7:99956522-99956555	chr7:99956521-99956522;chr7:99956555-99956556		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	2.56	0.00	NA	NA	0.00	4.35	8.11	6.67	3.23	0.00	0.00	0.00	3.12	0.00	2.78	0.00	10.00	9.76	15.38	11.76	11.11	0.00	0.00	0.00	0.00	0.956603	0.990505
K	alternative_acceptor	LST1,UST	chr6	+	chr6:31555744-31556294	chr6:31555744-31556273		chr6:31556274-31556294	chr6:31556294-31556295		14.29	15.92	33.33	5.88	16.16	8.06	7.21	5.41	15.38	3.74	3.45	7.69	6.88	5.88	13.79	7.36	5.24	5.77	16.47	15.38	13.33	5.26	12.16	12.50	15.76	11.11	18.75	6.25	12.61	11.30	11.76	20.00	16.81	3.45	11.54	6.59	15.84	11.43	-4.41	0.350322	0.709013
N	alternative_donor	ANPEP	chr15	-	chr15:90347849-90348352;chr15:90347849-90348308	chr15:90347849-90348176		chr15:90348177-90348308;chr15:90348309-90348352	chr15:90348308-90348309;chr15:90348352-90348353		1.21	2.38	2.87	4.76	3.33	10.00	0.00	0.22	0.20	1.11	0.71	0.75	0.75	0.45	0.79	1.79	1.50	1.57	NA	1.07	0.00	6.28	4.69	6.32	4.17	0.99	2.79	3.21	4.42	3.68	0.45	1.80	NA	6.12	4.88	5.74	1.56	0.72	-0.84	0.324670	0.650093
N	jcn_only_AD	SLC4A2	chr7	+	chr7:150771187-150771485	chr7:150771381-150771485		chr7:150771187-150771380	chr7:150771186-150771187		97.22	91.43	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	100.00	99.04	97.78	98.28	100.00	100.00	97.10	95.24	100.00	94.52	94.59	94.87	100.00	99.52	-0.48	0.840638	0.926053
K	alternative_last_exon	CFLAR	chr2	+	chr2:202025666-202027339;chr2:202025666-202028557	chr2:202025666-202027718	chr2:202028558-202041410	chr2:202027719-202028282			11.70	14.29	14.20	10.14	7.69	5.14	3.85	6.41	2.59	6.52	4.00	3.25	4.35	4.92	4.14	7.84	4.00	4.31	4.35	12.33	8.47	12.31	10.00	15.57	6.90	13.95	9.52	13.11	10.34	10.88	11.29	12.33	8.70	12.73	11.76	14.16	5.62	11.49	5.87	0.197850	0.427105
N	cassette	BBC3	chr19	-	chr19:47725176-47734185	chr19:47725176-47729820;chr19:47730012-47734185		chr19:47729821-47730011			100.00	95.35	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	83.33	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	UHRF1BP1L	chr12	-	chr12:100422389-100433373	chr12:100431534-100433373		chr12:100422389-100431533	chr12:100422388-100422389		100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	NA	100.00	93.33	100.00	92.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.656186	0.846812
K	intron_retention	HAX1	chr1	+	chr1:154246075-154246249				chr1:154246074-154246075;chr1:154246249-154246250		0.93	0.00	4.62	0.00	1.49	0.00	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	2.30	0.00	1.18	0.00	0.00	4.35	2.90	2.17	4.40	6.82	0.00	4.21	0.94	7.32	2.53	2.08	5.63	3.96	0.00	2.99	3.33	5.19	0.00	2.57	2.57	0.121536	1.000000
N	jcn_only_AA	RIN1	chr11	-	chr11:66100224-66100728	chr11:66100440-66100728		chr11:66100224-66100439	chr11:66100223-66100224		11.11	0.00	NA	NA	6.90	NA	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	13.33	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.180148	0.663989
K	intron_retention	ZFYVE27	chr10	+	chr10:99517481-99518992				chr10:99517480-99517481;chr10:99518992-99518993		5.88	0.00	4.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	5.00	0.00	0.00	5.26	0.00	NA	0.00	NA	0.00	2.70	NA	4.35	0.00	0.00	0.00	0.00	0.00	0.485603	1.000000
N	jcn_only_AD	MYO1G	chr7	-	chr7:45014827-45015082;chr7:45014827-45015078;chr7:45014827-45015159	chr7:45014827-45015074		chr7:45015075-45015078;chr7:45015079-45015082;chr7:45015083-45015159	chr7:45015078-45015079;chr7:45015082-45015083;chr7:45015159-45015160		5.36	0.00	1.99	NA	NA	NA	0.00	0.22	1.04	1.56	0.00	0.00	0.00	0.51	1.84	0.00	0.00	1.43	NA	2.38	0.00	5.00	0.00	5.17	0.00	1.31	2.30	1.43	0.00	0.00	3.39	3.94	NA	3.70	0.00	2.44	0.00	1.84	1.84	0.039931	0.474054
K	intron_retention	PIAS4	chr19	+	chr19:4028847-4028928				chr19:4028846-4028847;chr19:4028928-4028929		0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	6.25	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	3.85	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AD	MGST1	chr12	+	chr12:16507205-16510538	chr12:16507313-16510538		chr12:16507205-16507312	chr12:16507204-16507205		96.00	78.95	97.35	90.00	100.00	NA	100.00	98.15	98.52	100.00	97.96	98.55	100.00	99.39	98.42	98.15	98.72	100.00	NA	96.20	96.67	92.31	98.41	97.06	NA	100.00	98.28	98.57	98.00	93.55	94.55	98.13	100.00	98.20	97.22	97.40	100.00	97.18	-2.82	0.652492	0.819812
K	cassette	PDE4DIP	chr1	-	chr1:144952690-144994590	chr1:144952690-144955215;chr1:144955293-144994590		chr1:144955216-144955292			100.00	100.00	97.52	100.00	100.00	100.00	98.00	98.26	97.81	98.94	99.07	99.06	100.00	97.60	97.46	98.67	98.25	98.13	100.00	94.65	100.00	94.96	97.74	87.40	100.00	86.06	79.29	91.57	97.90	83.61	100.00	99.11	100.00	97.87	98.37	98.33	100.00	97.93	-2.07	0.160816	0.709176
N	alternative_donor	FERMT3	chr11	+	chr11:63978628-63978746	chr11:63978644-63978746		chr11:63978628-63978643	chr11:63978627-63978628		100.00	100.00	94.57	100.00	100.00	NA	100.00	100.00	100.00	98.83	100.00	100.00	98.96	100.00	96.49	98.94	98.94	100.00	100.00	100.00	100.00	100.00	96.27	96.23	100.00	95.12	95.83	97.78	100.00	100.00	95.35	96.10	100.00	97.76	95.88	100.00	100.00	100.00	0.00	0.220834	0.595046
K	alternative_first_exon	TMEM18	chr2	-	chr2:675631-676112;chr2:675631-677288;chr2:675631-676573	chr2:675631-675757	chr2:677289-677439;chr2:676574-676704	chr2:675758-676238			3.70	0.00	4.00	5.00	3.33	NA	7.32	11.76	5.13	2.22	5.36	3.12	14.71	15.00	9.30	13.89	15.56	6.25	0.00	9.52	0.00	11.76	10.34	4.55	NA	10.00	10.00	10.53	17.39	8.70	4.35	5.88	0.00	8.33	3.85	8.57	0.00	9.76	9.76	0.219571	0.424823
N	jcn_only_AD	ZNF598	chr16	-	chr16:28855423-28855634;chr16:28855423-28855595	chr16:28855423-28855550		chr16:28855551-28855595;chr16:28855596-28855634	chr16:28855595-28855596;chr16:28855634-28855635		96.83	92.52	93.81	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.52	97.99	95.00	100.00	100.00	93.38	96.30	95.56	100.00	100.00	100.00	82.22	85.94	92.45	100.00	100.00	100.00	96.69	96.56	-0.12	0.702152	0.845095
N	intron_retention		chr20	-	chr20:57571118-57571693				chr20:57571117-57571118;chr20:57571693-57571694		97.62	100.00	100.00	100.00	95.56	100.00	61.54	79.41	76.92	68.42	68.42	69.23	NA	72.73	100.00	80.00	68.75	NA	95.56	95.45	86.21	96.97	94.59	96.67	100.00	93.55	100.00	91.11	89.58	93.65	95.95	100.00	94.87	96.25	96.77	96.12	95.56	94.50	-1.06	0.984100	1.000000
K	alternative_last_exon	PTGIR	chr19	-	chr19:47125639-47126714,chr19:47124892-47126714,chr19:47124491-47126714,chr19:47124895-47126714,chr19:47124889-47126714,chr19:47124807-47126714,chr19:47124606-47126714,chr19:47117673-47126714;chr19:47124930-47126714	chr19:47126575-47126714	chr19:47123725-47124929	chr19:47126387-47126574			5.88	4.17	5.62	0.96	0.00	1.46	0.00	1.23	2.97	1.54	0.00	2.04	NA	1.94	2.16	2.13	3.12	2.86	4.08	6.90	6.04	7.41	6.98	10.34	2.38	3.23	4.58	3.70	3.23	3.64	5.00	5.75	14.29	9.68	8.33	8.59	4.08	4.12	0.04	0.729710	0.828356
N	coord_cassette	ILF3	chr19	+	chr19:10794647-10799854	chr19:10794647-10798021;chr19:10798385-10799225;chr19:10799355-10799854		chr19:10798022-10798384;chr19:10799226-10799354			81.82	100.00	91.67	NA	100.00	NA	100.00	NA	100.00	100.00	95.24	94.44	100.00	100.00	97.30	100.00	100.00	100.00	72.73	69.23	87.50	92.31	100.00	100.00	NA	NA	100.00	92.59	100.00	100.00	58.33	100.00	NA	100.00	100.00	84.62	100.00	75.53	-24.47	0.212124	0.643829
K	intron_retention	COPS6	chr7	+	chr7:99689144-99689271				chr7:99689143-99689144;chr7:99689271-99689272		0.00	1.38	0.00	0.00	0.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	1.69	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	5.71	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.711796	1.000000
K	intron_retention	INPP5K	chr17	-	chr17:1400098-1401229				chr17:1400097-1400098;chr17:1401229-1401230		0.00	0.00	6.25	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	11.11	NA	0.00	NA	0.00	NA	11.76	9.09	0.00	NA	NA	NA	0.00	0.00	0.00	0.958401	1.000000
N	alternative_acceptor	MGLL	chr3	-	chr3:127541688-127541926;chr3:127541198-127541926	chr3:127540682-127541926		chr3:127540682-127541197;chr3:127541198-127541687	chr3:127540681-127540682;chr3:127541197-127541198		95.45	90.00	92.00	100.00	100.00	95.65	98.58	97.70	94.59	97.58	98.37	95.89	96.03	95.61	97.62	96.97	98.04	96.06	NA	96.97	100.00	97.22	97.96	97.01	NA	96.05	93.94	99.10	99.03	97.17	97.50	100.00	100.00	97.66	97.60	96.51	97.31	96.51	-0.80	0.871151	0.956197
N	jcn_only_AA	GAK	chr4	-	chr4:860193-860743;chr4:860290-860743;chr4:860365-860743	chr4:860323-860743		chr4:860193-860289;chr4:860290-860322;chr4:860323-860364	chr4:860192-860193;chr4:860289-860290;chr4:860322-860323		67.65	57.41	73.33	56.25	40.00	33.33	70.18	55.71	60.87	43.55	51.39	42.86	66.04	53.62	60.00	54.72	46.91	40.54	78.57	49.18	62.22	52.38	54.79	51.28	76.47	71.95	63.16	55.26	62.75	48.28	61.90	63.44	56.76	52.05	47.37	47.67	68.11	58.80	-9.31	0.176073	0.663989
K	intron_retention	POLR2A	chr17	+	chr17:7417086-7417094				chr17:7417085-7417086;chr17:7417094-7417095		97.33	100.00	95.04	96.67	93.98	100.00	97.67	94.66	97.48	96.77	97.12	95.35	93.58	97.14	97.37	96.00	96.18	95.45	100.00	97.67	95.45	97.22	95.49	95.56	95.24	96.36	97.24	93.51	100.00	95.05	97.83	96.25	100.00	98.08	97.16	96.76	98.84	97.23	-1.60	0.740516	1.000000
N	alternative_acceptor	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401382-80402322	chr17:80401503-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		3.11	0.00	0.00	0.00	4.84	3.33	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	5.00	1.69	0.00	0.00	0.00	0.00	3.70	0.00	0.00	3.03	2.86	0.00	0.00	0.00	2.80	8.33	4.55	0.00	1.30	0.84	0.00	-0.84	0.338215	0.709013
N	cassette	PRPF3	chr1	+	chr1:150318968-150325308	chr1:150318968-150321632;chr1:150321695-150325308		chr1:150321633-150321694			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_first_exon	DHRS4L2	chr14	+	chr14:24456483-24459390;chr14:24439542-24459390	chr14:24458285-24459390	chr14:24456439-24456482;chr14:24439083-24439541	chr14:24458027-24458284			100.00	92.16	94.87	100.00	91.30	100.00	93.10	100.00	100.00	93.75	92.31	100.00	80.00	100.00	100.00	91.67	92.59	100.00	100.00	100.00	100.00	NA	90.91	NA	NA	100.00	100.00	NA	75.00	NA	NA	100.00	100.00	NA	NA	100.00	93.10	100.00	6.90	0.130373	0.308050
K	alternative_last_exon	KIF1B,NIT1	chr1	+	chr1:161090023-161093930	chr1:161090023-161090288	chr1:161093931-161095235	chr1:161090289-161090983			75.41	89.53	70.31	92.00	90.38	97.92	69.44	63.83	66.04	54.17	56.41	70.37	67.50	60.98	64.71	42.31	52.94	57.14	93.10	68.18	91.89	64.71	68.09	66.67	95.45	70.21	74.19	68.00	79.17	86.96	76.74	67.65	92.73	65.38	61.11	65.22	91.13	69.19	-21.94	0.030764	0.217248
N	cassette	ECM1	chr1	+	chr1:150482058-150483351;chr1:150482239-150483351	chr1:150482058-150482577,chr1:150482239-150482577;chr1:150482659-150483351		chr1:150482578-150482658			100.00	100.00	93.33	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.43	98.04	NA	100.00	100.00	100.00	100.00	100.00	95.24	96.97	100.00	98.46	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	NAA10	chrX	-	chrX:153195677-153196215				chrX:153195676-153195677;chrX:153196215-153196216		7.69	3.65	8.57	4.62	4.76	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	3.09	5.88	5.00	0.00	5.94	14.29	6.06	3.23	4.76	0.00	15.79	9.68	2.41	0.00	3.51	0.00	2.70	3.85	1.15	0.561023	1.000000
K	intron_retention		chr16	+	chr16:31371152-31371240				chr16:31371151-31371152;chr16:31371240-31371241		3.39	12.00	14.75	NA	25.00	NA	0.41	0.00	0.00	0.43	0.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.35	0.00	7.14	12.16	2.08	24.00	1.89	2.13	2.86	4.23	0.00	10.00	0.00	28.57	5.38	8.16	2.70	12.00	2.64	-9.36	0.419612	1.000000
N	alternative_last_exon	GIMAP2	chr7	+	chr7:150384176-150387246;chr7:150384176-150416129;chr7:150384176-150389402	chr7:150384176-150386576	chr7:150416130-150416178;chr7:150389403-150390729	chr7:150386577-150386790			1.12	0.00	3.28	NA	7.69	NA	0.81	0.66	0.00	0.00	0.00	0.00	1.16	0.64	0.00	0.00	0.00	0.00	12.50	2.20	5.26	NA	5.88	7.14	NA	0.67	1.64	0.00	0.00	1.79	0.00	4.23	NA	0.00	5.56	2.63	0.98	0.67	-0.32	0.425877	0.580316
N	alternative_acceptor	LTBP4	chr19	+	chr19:49375909-49377130;chr19:49375909-49376486	chr19:49375909-49376481		chr19:49376482-49376486;chr19:49376487-49377130	chr19:49376486-49376487;chr19:49377130-49377131		99.72	97.62	99.33	99.29	98.28	90.62	100.00	99.69	99.35	100.00	99.26	100.00	100.00	99.42	99.36	99.81	100.00	100.00	95.00	99.74	98.04	99.82	99.59	99.83	90.62	99.78	98.92	99.62	99.12	99.52	99.83	99.65	96.97	99.83	99.51	98.98	97.30	99.73	2.43	0.092775	0.597021
N	jcn_only_AA	MED8	chr1	-	chr1:43852664-43853173;chr1:43852638-43853173	chr1:43852670-43853173		chr1:43852638-43852663;chr1:43852664-43852669	chr1:43852637-43852638;chr1:43852663-43852664		100.00	100.00	98.21	100.00	100.00	NA	100.00	100.00	100.00	94.87	98.11	100.00	100.00	97.56	98.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	0.00	0.180978	0.663989
K	intron_retention	SH3D21	chr1	+	chr1:36786580-36786656				chr1:36786579-36786580;chr1:36786656-36786657		9.68	30.43	29.41	16.41	17.54	20.20	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	13.46	29.41	5.56	17.07	27.69	12.20	23.70	21.43	9.09	8.33	4.00	7.14	34.21	23.81	29.07	19.64	20.00	10.53	26.38	25.42	-0.96	0.999853	1.000000
K	cassette	SPP1	chr4	+	chr4:88898250-88901197	chr4:88898250-88898813;chr4:88899012-88901197		chr4:88898814-88899011			0.29	0.75	0.26	2.44	1.32	11.11	0.16	0.18	0.16	0.40	0.55	0.29	0.16	0.23	0.17	0.68	0.57	0.32	2.76	0.28	0.64	0.66	0.56	0.77	1.57	0.21	0.33	0.75	0.54	0.51	0.33	0.44	1.37	1.08	0.76	0.82	1.06	0.26	-0.81	0.083462	0.641134
N	cassette	CD163L1	chr12	-	chr12:7510083-7520682;chr12:7510083-7521528	chr12:7510083-7519831;chr12:7519928-7521528,chr12:7519928-7520682		chr12:7519832-7519927			99.09	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	73.04	81.82	NA	70.83	69.57	75.00	99.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.901004	0.969662
K	intron_retention	GPAA1	chr8	+	chr8:145139234-145139315				chr8:145139233-145139234;chr8:145139315-145139316		0.00	0.00	7.89	9.09	3.45	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	6.67	9.52	9.76	NA	0.00	7.69	3.45	8.33	4.08	0.00	0.00	4.55	5.26	8.00	8.11	6.67	0.00	0.00	0.00	0.476052	1.000000
N	alternative_acceptor	PPP6R1	chr19	-	chr19:55741896-55741980	chr19:55741900-55741980		chr19:55741896-55741899	chr19:55741895-55741896		100.00	100.00	95.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	MRPL20	chr1	-	chr1:1341267-1341605;chr1:1341267-1342215	chr1:1341267-1342288		chr1:1341606-1342215;chr1:1342216-1342288	chr1:1342215-1342216;chr1:1342288-1342289		97.98	99.30	97.81	100.00	99.23	100.00	99.00	100.00	98.59	98.80	99.17	98.08	99.10	100.00	98.57	99.20	98.55	100.00	100.00	97.37	99.49	94.74	98.36	96.72	99.23	98.08	99.17	98.97	98.85	97.52	97.03	96.95	99.61	99.07	96.88	96.52	99.27	98.03	-1.23	0.131064	0.543255
K	intron_retention		chr16	+	chr16:31193986-31195178				chr16:31193985-31193986;chr16:31195178-31195179		0.00	0.00	3.61	0.00	0.00	NA	1.06	1.28	1.59	0.00	0.72	0.00	1.68	1.01	3.12	0.45	0.62	0.00	NA	1.25	0.00	0.00	0.00	0.93	8.70	0.96	0.00	0.00	0.00	0.00	7.55	1.56	0.00	1.27	0.78	0.00	1.06	1.13	0.07	0.883069	1.000000
K	cassette	SLC35B1	chr17	-	chr17:47783259-47784326	chr17:47783259-47783565;chr17:47783697-47784326		chr17:47783566-47783696			96.00	100.00	93.02	NA	93.33	NA	97.37	100.00	100.00	100.00	98.11	97.06	97.83	92.86	100.00	95.45	98.36	97.06	86.67	85.00	100.00	96.55	90.38	90.91	NA	93.33	91.18	95.83	95.00	93.55	100.00	94.44	91.67	97.37	94.00	89.66	97.37	94.66	-2.71	0.959108	0.988542
N	alternative_acceptor	FCN1	chr9	-	chr9:137801892-137802978;chr9:137802828-137802978	chr9:137801847-137802978		chr9:137801847-137801891;chr9:137801892-137802827	chr9:137801846-137801847;chr9:137801891-137801892		5.56	2.99	NA	0.00	1.03	0.00	0.90	0.00	0.91	2.00	1.03	1.97	0.00	0.00	0.00	2.50	1.04	2.70	2.70	4.62	0.00	2.00	1.33	2.54	0.00	0.00	0.00	0.00	0.00	0.00	3.75	0.00	3.45	2.43	2.66	1.91	1.80	1.88	0.07	0.614938	0.853734
N	jcn_only_AA		chr20	+	chr20:61430402-61430784;chr20:61430402-61430822	chr20:61430402-61430807		chr20:61430785-61430807;chr20:61430808-61430822	chr20:61430807-61430808;chr20:61430822-61430823		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.30	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_donor	MYO9B	chr19	+	chr19:17313752-17313955;chr19:17313794-17313955;chr19:17313814-17313955;chr19:17313758-17313955	chr19:17313693-17313955		chr19:17313693-17313751;chr19:17313752-17313757;chr19:17313758-17313793;chr19:17313794-17313813	chr19:17313692-17313693;chr19:17313751-17313752;chr19:17313757-17313758;chr19:17313793-17313794		94.17	92.50	93.14	95.65	95.24	NA	97.37	94.67	95.65	97.44	98.21	100.00	95.27	94.55	94.95	98.00	97.60	97.98	100.00	93.83	95.83	92.98	93.75	94.61	97.14	90.08	95.29	96.88	92.41	96.92	97.01	95.18	100.00	94.31	96.98	97.00	97.25	94.36	-2.89	0.073843	0.460677
N	cassette	EIF3K	chr19	+	chr19:39123137-39125632;chr19:39123104-39125632	chr19:39123104-39123240,chr19:39123137-39123240;chr19:39123319-39125632		chr19:39123241-39123318			97.67	95.90	96.33	96.28	96.05	97.44	98.99	96.15	100.00	98.51	98.43	97.79	98.51	100.00	100.00	98.44	97.32	96.64	95.89	96.83	97.81	93.90	95.74	96.00	96.29	100.00	95.15	98.17	98.47	97.72	93.44	96.84	94.86	94.57	96.30	97.20	96.09	97.25	1.16	0.629957	0.865719
K	intron_retention		chr8	-	chr8:124232538-124238739				chr8:124232537-124232538;chr8:124238739-124238740		0.00	0.00	2.86	0.00	2.22	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.57	0.00	0.00	0.00	2.63	7.69	5.17	3.33	3.12	0.00	0.00	0.00	4.76	0.00	5.00	0.00	9.38	2.04	10.42	0.00	6.06	2.08	0.00	2.17	2.17	0.923286	1.000000
N	alternative_acceptor	CDC34	chr19	+	chr19:537148-541345;chr19:537148-541338;chr19:537148-541342	chr19:537148-538677		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		11.54	7.14	14.29	5.26	6.25	4.17	0.00	0.00	0.00	0.00	0.00	NA	5.56	0.00	5.00	4.55	4.35	NA	7.41	16.67	7.69	11.76	7.69	NA	5.26	7.14	11.54	6.25	7.14	7.69	15.79	20.00	7.14	10.00	11.76	12.00	6.35	9.34	2.99	0.372589	0.709013
K	intron_retention	MARS	chr12	+	chr12:57909120-57909702				chr12:57909119-57909120;chr12:57909702-57909703		2.99	0.00	4.88	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	4.26	0.89	5.56	3.95	3.23	0.00	5.77	2.88	0.00	0.00	0.00	4.08	5.10	0.00	5.00	3.70	4.08	0.00	3.54	3.54	0.120832	1.000000
K	intron_retention	CSNK1D	chr17	-	chr17:80209404-80210309				chr17:80209403-80209404;chr17:80210309-80210310		0.88	0.00	9.09	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	2.65	0.00	0.00	0.98	2.13	0.00	0.00	0.00	0.00	2.54	8.82	0.75	1.06	1.07	0.00	0.00	0.00	0.734014	1.000000
N	jcn_only_AA	SYVN1	chr11	-	chr11:64896309-64897200;chr11:64896263-64897200	chr11:64896187-64897200		chr11:64896187-64896262;chr11:64896263-64896308	chr11:64896186-64896187;chr11:64896262-64896263		100.00	100.00	100.00	NA	100.00	NA	96.88	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.963918	0.987074
K	intron_retention	NFKBIA	chr14	-	chr14:35871870-35871976				chr14:35871869-35871870;chr14:35871976-35871977		3.44	4.23	3.95	2.36	2.92	1.57	0.50	0.80	0.57	0.61	1.04	0.47	0.00	0.86	1.44	1.05	1.44	0.51	5.03	3.97	4.49	3.62	3.19	3.40	7.89	3.65	3.65	3.39	3.35	2.74	5.40	5.56	6.93	3.70	4.27	2.93	4.63	3.54	-1.09	0.896312	1.000000
K	alternative_acceptor	SELM	chr22	-	chr22:31501952-31503362;chr22:31502033-31503362;chr22:31502102-31503362	chr22:31502150-31503362		chr22:31501952-31502032;chr22:31502033-31502101;chr22:31502102-31502149	chr22:31501951-31501952;chr22:31502032-31502033;chr22:31502101-31502102		1.22	0.00	0.83	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	NA	NA	NA	0.00	1.30	0.46	0.00	0.00	0.00	0.00	1.96	0.48	NA	0.00	NA	1.25	0.85	0.00	NA	0.00	7.14	0.00	1.23	1.23	0.031304	0.557523
N	alternative_acceptor	FNBP1	chr9	-	chr9:132655518-132658116;chr9:132654367-132658116	chr9:132652826-132658116		chr9:132652826-132654366;chr9:132654367-132655517	chr9:132652825-132652826;chr9:132654366-132654367		45.00	17.39	70.97	NA	NA	27.27	89.39	63.64	84.78	88.89	86.36	78.05	87.67	82.76	89.33	92.50	86.21	78.79	15.38	60.00	NA	NA	66.67	68.42	NA	55.56	66.67	NA	72.73	NA	NA	50.00	NA	68.75	68.75	72.92	52.53	60.00	7.47	0.704701	0.889760
N	alternative_acceptor	TMEM150B	chr19	-	chr19:55821664-55828153	chr19:55824424-55828153		chr19:55821664-55824423	chr19:55821663-55821664		100.00	100.00	94.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	NA	92.86	NA	100.00	100.00	89.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AA	NEU1	chr6	-	chr6:31827956-31828215	chr6:31828042-31828215		chr6:31827956-31828041	chr6:31827955-31827956		95.40	94.85	97.24	97.50	97.64	100.00	97.72	96.71	97.16	97.85	98.91	100.00	98.45	97.72	96.52	96.38	98.88	98.95	100.00	96.25	96.18	98.00	98.21	100.00	100.00	96.28	97.89	97.83	98.26	98.51	95.88	94.83	94.52	97.13	96.73	97.24	98.09	96.27	-1.82	0.285990	0.663989
K	jcn_only_AD	STARD3	chr17	+	chr17:37814093-37814225	chr17:37814106-37814225		chr17:37814093-37814105	chr17:37814092-37814093		93.62	95.16	86.15	76.92	89.74	NA	95.24	96.08	93.18	88.00	95.45	96.43	94.74	91.49	89.66	93.10	95.00	94.12	87.50	91.38	88.00	85.71	88.71	93.75	100.00	94.12	89.86	90.00	93.44	84.62	90.62	93.15	88.89	83.72	85.00	86.05	94.95	92.56	-2.39	0.743922	0.866332
K	intron_retention	C17orf62	chr17	-	chr17:80404573-80405455				chr17:80404572-80404573;chr17:80405455-80405456		10.67	17.11	13.73	NA	10.71	NA	1.04	1.08	0.86	3.12	1.45	0.00	1.67	1.78	3.23	3.12	1.28	0.00	5.88	7.53	5.88	13.33	9.62	10.53	9.09	8.74	9.15	11.11	7.89	11.11	8.16	10.31	8.70	4.55	8.33	6.98	7.29	7.85	0.56	0.990588	1.000000
K	intron_retention		chr22	+	chr22:37705365-37707028				chr22:37705364-37705365;chr22:37707028-37707029		1.89	7.14	4.34	NA	0.00	NA	0.58	0.81	0.84	0.83	0.56	0.77	1.31	0.88	1.03	2.74	0.98	0.93	5.26	1.64	2.47	2.27	2.74	0.00	8.51	2.56	3.12	4.44	2.94	1.65	2.02	1.35	3.70	1.82	3.06	3.17	4.48	1.76	-2.72	0.621314	1.000000
N	alternative_acceptor	HADHA	chr2	-	chr2:26432759-26435438	chr2:26433684-26435438		chr2:26432759-26433683	chr2:26432758-26432759		4.44	0.00	4.81	0.00	2.08	NA	0.00	0.00	1.16	0.00	0.00	0.00	0.36	1.27	2.67	0.80	0.68	0.00	0.00	3.75	3.57	4.82	2.27	3.75	NA	5.56	5.49	1.45	0.82	1.85	4.35	5.97	0.00	3.73	3.30	3.14	0.00	4.05	4.05	0.014916	0.497484
K	alternative_donor	ABTB1	chr3	+	chr3:127392227-127393233;chr3:127391925-127393233	chr3:127392452-127393233		chr3:127391925-127392226;chr3:127392227-127392451	chr3:127391924-127391925;chr3:127392226-127392227		0.00	3.12	3.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.44	5.13	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	2.44	3.23	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	1.22	0.00	-1.22	0.917001	0.981916
K	cassette	STARD3	chr17	+	chr17:37814106-37814657;chr17:37814093-37814657	chr17:37814093-37814225,chr17:37814106-37814225;chr17:37814280-37814657		chr17:37814226-37814279			90.74	96.43	94.29	100.00	92.31	NA	100.00	94.23	100.00	100.00	97.22	100.00	100.00	95.83	96.15	100.00	98.31	100.00	92.86	97.96	95.83	86.21	91.94	90.62	95.24	100.00	95.59	90.91	94.74	100.00	91.43	95.83	85.00	95.65	96.61	91.67	95.84	95.03	-0.81	0.968711	0.991878
N	alternative_acceptor	PRR14	chr16	+	chr16:30664730-30665550	chr16:30664730-30665526		chr16:30665527-30665550	chr16:30665550-30665551		0.00	0.00	3.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	4.17	0.00	0.00	0.00	9.09	4.00	0.00	3.23	NA	NA	0.00	2.38	0.00	0.00	8.33	3.12	0.00	0.00	5.00	0.00	2.94	0.00	0.00	0.00	0.463499	0.765952
N	alternative_acceptor	MS4A6A	chr11	-	chr11:59943473-59945732;chr11:59943007-59945732;chr11:59943085-59945732	chr11:59944889-59945732		chr11:59943007-59943084;chr11:59943085-59943472;chr11:59943473-59944888	chr11:59943006-59943007;chr11:59943084-59943085;chr11:59943472-59943473		8.33	7.69	11.54	1.69	2.11	2.60	2.27	2.08	NA	0.00	1.01	0.64	3.10	1.92	NA	0.00	0.89	0.00	7.87	5.56	NA	0.00	3.92	0.91	11.90	4.44	4.35	1.30	3.74	0.74	NA	6.25	7.69	0.95	3.49	0.63	7.69	4.44	-3.25	0.253549	0.709013
K	alternative_acceptor	ENY2	chr8	+	chr8:110351620-110352672;chr8:110351620-110352717	chr8:110351620-110352719		chr8:110352673-110352717;chr8:110352718-110352719	chr8:110352717-110352718;chr8:110352719-110352720		23.33	26.02	21.25	18.18	19.12	19.08	28.40	19.35	20.99	23.42	22.95	23.53	21.05	22.13	22.55	18.85	21.67	18.11	18.81	15.19	15.25	15.94	13.83	21.69	35.23	20.21	16.28	15.96	16.92	12.72	20.83	17.82	16.00	21.84	23.00	12.00	23.54	20.52	-3.02	0.232618	0.685872
N	cassette	HNRNPUL2,HNRNPUL2-BSCL2	chr11	-	chr11:62483080-62484460	chr11:62483080-62483335;chr11:62483410-62484460		chr11:62483336-62483409			91.67	92.92	92.93	100.00	96.74	91.89	97.60	97.27	96.33	95.54	96.20	94.74	97.92	97.06	93.58	96.04	97.11	96.39	96.47	90.00	99.03	93.88	93.08	95.65	89.55	94.12	88.89	96.72	94.78	94.12	100.00	95.16	93.24	97.10	93.07	97.78	94.85	95.59	0.74	0.847369	0.949198
K	coord_cassette	TRAPPC3	chr1	-	chr1:36603580-36614937	chr1:36603580-36605320;chr1:36605421-36605669;chr1:36605768-36614937		chr1:36605321-36605420;chr1:36605670-36605767			96.30	100.00	97.30	96.97	98.28	97.44	98.25	97.87	100.00	95.92	100.00	100.00	98.15	100.00	95.92	100.00	97.96	100.00	97.56	100.00	96.77	100.00	100.00	94.59	100.00	100.00	98.48	100.00	100.00	100.00	96.49	98.65	95.92	100.00	100.00	96.77	98.20	98.94	0.73	0.895724	0.968725
K	intron_retention	EZR	chr6	-	chr6:159188111-159188292				chr6:159188110-159188111;chr6:159188292-159188293		2.02	0.00	6.52	0.00	0.00	0.00	0.00	0.00	1.37	0.82	0.95	0.80	0.96	0.00	1.25	0.00	0.00	0.00	0.00	1.35	0.00	0.00	5.48	1.19	0.00	0.85	0.00	0.00	1.85	1.67	0.00	2.78	NA	0.00	0.00	0.75	0.00	0.42	0.42	0.629254	1.000000
N	alternative_donor	RRBP1	chr20	-	chr20:17594866-17595381;chr20:17594866-17595414	chr20:17594866-17595384		chr20:17595382-17595384;chr20:17595385-17595414	chr20:17595384-17595385;chr20:17595414-17595415		10.67	14.93	3.57	7.14	3.70	8.16	0.00	4.62	2.44	0.00	3.12	4.55	3.33	1.32	2.86	3.33	0.00	2.70	9.26	11.48	7.02	8.33	6.90	10.71	11.27	6.49	2.86	3.70	0.00	4.88	13.33	11.11	13.33	8.70	4.76	11.59	10.27	8.58	-1.69	0.822503	0.942979
N	jcn_only_AD		chr9	-	chr9:100975501-100982432;chr9:100975501-100976364	chr9:100975501-100983114		chr9:100976365-100982432;chr9:100982433-100983114	chr9:100982432-100982433;chr9:100983114-100983115		100.00	100.00	95.56	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	95.00	98.86	NA	100.00	97.92	100.00	92.31	98.89	NA	98.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.184384	0.657607
K	intron_retention	EHBP1L1	chr11	+	chr11:65348723-65351711				chr11:65348722-65348723;chr11:65351711-65351712		48.98	35.29	68.33	NA	54.55	NA	81.25	82.76	88.89	NA	84.62	NA	69.57	92.31	91.30	NA	81.82	NA	81.82	56.36	50.00	NA	56.00	70.00	100.00	68.18	63.79	90.00	63.64	NA	37.14	41.67	45.00	61.54	61.54	66.67	75.41	62.27	-13.14	0.714760	1.000000
K	cassette	OSTC	chr4	+	chr4:109576814-109588402	chr4:109576814-109578605;chr4:109578804-109588402		chr4:109578606-109578803			97.44	96.15	100.00	100.00	98.15	100.00	98.73	100.00	97.50	98.43	97.65	98.46	97.50	100.00	96.15	98.77	96.98	98.54	91.67	93.75	98.08	97.56	94.79	97.20	NA	100.00	100.00	96.67	96.10	96.84	90.62	88.37	92.16	97.14	98.23	95.04	96.15	98.72	2.57	0.443176	0.746613
N	alternative_last_exon	TSC22D4	chr7	-	chr7:100064861-100065174;chr7:100064792-100065174;chr7:100061653-100065174	chr7:100061310-100065174	chr7:100064142-100064791;chr7:100061586-100061652	chr7:100060986-100061309			3.74	4.56	8.39	0.00	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.83	1.06	0.00	0.88	0.00	1.39	0.00	5.34	0.00	0.99	0.00	2.94	10.29	6.01	0.00	1.20	0.00	1.50	0.41	-1.08	0.429803	0.583528
K	intron_retention	HNRNPH1	chr5	-	chr5:179041961-179043126				chr5:179041960-179041961;chr5:179043126-179043127		43.75	43.75	40.74	20.00	12.00	NA	0.00	NA	4.76	2.38	4.35	0.00	6.67	0.00	6.90	0.00	0.00	0.00	16.67	21.74	20.00	16.36	11.86	12.50	NA	6.25	14.29	6.52	6.82	4.76	48.48	35.00	31.58	23.68	24.00	16.33	16.67	21.74	5.07	0.556121	1.000000
N	alternative_donor	SDS	chr12	-	chr12:113836957-113837360	chr12:113836957-113837348		chr12:113837349-113837360	chr12:113837360-113837361		1.75	20.83	1.89	NA	8.82	NA	0.00	0.32	0.15	0.40	0.66	0.00	0.00	0.00	0.00	1.43	0.00	0.00	40.00	1.14	2.65	3.70	1.42	7.14	25.00	2.14	1.47	0.00	1.30	0.00	4.53	3.08	43.48	1.36	3.45	0.93	22.91	1.44	-21.47	0.048315	0.393087
N	cassette	BIN2	chr12	-	chr12:51675313-51685374;chr12:51678572-51685374	chr12:51675313-51681891,chr12:51678572-51681891;chr12:51681973-51685374		chr12:51681892-51681972			93.04	94.25	93.00	81.82	92.16	NA	100.00	95.45	100.00	100.00	96.36	100.00	97.01	95.89	100.00	100.00	100.00	100.00	94.59	94.95	96.05	100.00	100.00	95.83	100.00	93.81	94.59	100.00	97.65	100.00	96.67	90.65	100.00	100.00	95.59	94.74	98.50	95.20	-3.30	0.068542	0.624766
N	alternative_donor	SIPA1	chr11	+	chr11:65412298-65412425;chr11:65410111-65412425	chr11:65410075-65412425		chr11:65410075-65410110;chr11:65410111-65412297	chr11:65410074-65410075;chr11:65410110-65410111		0.00	0.00	0.00	NA	NA	NA	6.82	0.00	6.06	NA	0.00	NA	0.00	4.35	0.00	0.00	0.00	NA	NA	4.00	0.00	NA	5.56	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	7.14	0.00	0.00	0.00	0.00	0.986879	0.996794
N	alternative_donor	PCMT1	chr6	+	chr6:150123561-150131751;chr6:150131260-150131751;chr6:150123553-150131751	chr6:150123506-150131751		chr6:150123506-150123552;chr6:150123553-150123560;chr6:150123561-150131259	chr6:150123505-150123506;chr6:150123552-150123553;chr6:150123560-150123561		63.20	60.00	69.77	50.55	62.02	38.52	52.27	45.98	53.49	51.06	50.00	38.30	50.96	39.42	45.24	33.77	40.68	46.81	56.73	60.17	48.86	60.00	58.54	50.47	46.07	52.00	67.69	48.68	50.98	37.25	59.83	64.65	54.86	54.63	56.12	53.46	53.56	55.91	2.35	0.991314	0.997584
N	alternative_acceptor	NISCH	chr3	+	chr3:52525530-52525892;chr3:52525530-52525887	chr3:52525530-52525646		chr3:52525647-52525887;chr3:52525888-52525892	chr3:52525887-52525888;chr3:52525892-52525893		12.35	10.26	12.66	NA	8.47	NA	0.00	NA	0.00	NA	4.55	NA	1.67	0.00	NA	0.00	1.85	NA	9.09	10.26	9.52	16.67	9.57	NA	6.06	0.00	13.43	NA	6.02	NA	17.65	14.71	7.69	10.00	13.79	6.67	6.88	10.26	3.38	0.583053	0.841804
N	cassette	UFM1	chr13	+	chr13:38928434-38934847;chr13:38932270-38934847	chr13:38932270-38933437,chr13:38928434-38933437;chr13:38933471-38934847		chr13:38933438-38933470			100.00	100.00	97.44	100.00	100.00	100.00	97.96	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	97.83	NA	100.00	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.462154	0.759410
N	alternative_acceptor		chr7	+	chr7:208977-209193;chr7:208977-218268;chr7:208977-227647	chr7:208977-286380		chr7:209194-218268;chr7:218269-227647;chr7:227648-286380	chr7:218268-218269;chr7:227647-227648;chr7:286380-286381		99.28	94.12	99.37	100.00	97.18	NA	100.00	100.00	100.00	100.00	99.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	99.54	100.00	NA	100.00	100.00	98.57	99.16	100.00	100.00	100.00	100.00	98.06	98.61	100.00	100.00	100.00	0.00	0.421211	0.733210
N	jcn_only_AD	DUS1L	chr17	-	chr17:80019230-80019493;chr17:80019230-80019517	chr17:80019230-80019432		chr17:80019433-80019493;chr17:80019494-80019517	chr17:80019493-80019494;chr17:80019517-80019518		0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	4.17	1.64	0.00	5.00	0.00	4.88	0.00	2.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.363217	0.657607
K	cassette	GOLGA4	chr3	+	chr3:37396679-37407570	chr3:37396679-37402733;chr3:37402797-37407570		chr3:37402734-37402796			17.31	12.90	9.09	7.69	4.35	10.34	4.35	17.71	10.00	6.06	12.50	9.49	9.30	21.54	9.36	10.20	3.70	11.11	0.00	16.03	6.82	10.26	7.50	15.15	NA	11.45	10.23	9.52	7.41	10.58	16.09	5.88	0.00	8.06	2.50	8.78	4.35	16.70	12.35	0.007319	0.267181
N	coord_cassette	TPRA1	chr3	-	chr3:127292632-127295459	chr3:127292632-127294027;chr3:127294109-127294591;chr3:127294653-127294782;chr3:127294894-127295459		chr3:127294028-127294108;chr3:127294592-127294652;chr3:127294783-127294893			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	88.89	NA	97.06	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	75.00	100.00	96.00	100.00	100.00	100.00	0.00	0.541388	0.740610
N	jcn_only_AD	ZNF330	chr4	+	chr4:142142209-142143519;chr4:142142241-142143519;chr4:142118096-142143519;chr4:142142232-142143519;chr4:142142171-142143519	chr4:142142263-142143519		chr4:142118096-142142170;chr4:142142171-142142208;chr4:142142209-142142231;chr4:142142232-142142240;chr4:142142241-142142262	chr4:142118095-142118096;chr4:142142170-142142171;chr4:142142208-142142209;chr4:142142231-142142232;chr4:142142240-142142241		100.00	100.00	100.00	91.67	100.00	83.33	88.51	96.30	96.00	88.75	91.00	91.67	89.00	96.00	100.00	92.00	88.54	97.14	92.31	93.75	88.89	88.46	88.68	85.71	100.00	94.44	95.65	90.00	97.06	100.00	90.91	100.00	100.00	90.32	92.86	96.77	96.16	95.22	-0.94	0.922597	0.958585
N	jcn_only_AD	ITGAX	chr16	+	chr16:31388560-31390888;chr16:31388555-31390888;chr16:31388595-31390888	chr16:31388587-31390888		chr16:31388555-31388559;chr16:31388560-31388586;chr16:31388587-31388594	chr16:31388554-31388555;chr16:31388559-31388560;chr16:31388586-31388587		98.86	100.00	90.18	95.74	95.71	95.45	99.04	100.00	100.00	98.11	100.00	100.00	98.11	100.00	100.00	97.95	98.74	98.58	93.75	94.59	97.06	92.90	94.04	93.94	100.00	100.00	98.21	98.97	95.26	95.65	96.30	98.77	100.00	94.65	92.16	95.24	99.52	99.43	-0.09	0.891708	0.944579
K	cassette	CLN3,RP11-435I10.4	chr16	-	chr16:28495440-28498776	chr16:28495440-28497898;chr16:28497972-28498776		chr16:28497899-28497971			100.00	91.67	100.00	NA	89.47	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.31	94.74	100.00	NA	91.67	100.00	NA	96.43	100.00	100.00	95.45	95.00	100.00	100.00	92.31	81.82	100.00	100.00	92.31	100.00	7.69	0.181989	0.709176
N	intron_retention		chr5	-	chr5:180257404-180257707				chr5:180257403-180257404;chr5:180257707-180257708		100.00	100.00	98.28	100.00	100.00	93.44	97.67	100.00	100.00	95.12	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	98.44	100.00	100.00	98.80	100.00	100.00	100.00	94.55	100.00	100.00	0.00	0.594508	1.000000
K	jcn_only_AA	FKBP11	chr12	-	chr12:49317636-49318005	chr12:49317758-49318005		chr12:49317636-49317757	chr12:49317635-49317636		0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	5.26	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	ITGAX	chr16	+	chr16:31383831-31383917				chr16:31383830-31383831;chr16:31383917-31383918		0.84	7.89	2.46	7.89	8.47	0.00	0.78	1.98	1.59	0.90	1.09	0.00	0.93	5.26	3.57	2.01	0.00	0.00	3.12	2.30	0.00	4.86	7.51	2.99	11.90	1.98	3.37	5.52	6.25	2.94	0.00	3.90	0.00	4.70	3.24	2.50	2.02	1.98	-0.04	0.797073	1.000000
N	alternative_acceptor	PNKP	chr19	-	chr19:50369762-50370310;chr19:50369703-50370310	chr19:50369786-50370310		chr19:50369703-50369761;chr19:50369762-50369785	chr19:50369702-50369703;chr19:50369761-50369762		10.00	0.00	15.00	NA	NA	NA	0.00	NA	10.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	NA	0.00	0.00	NA	6.67	NA	0.00	0.00	10.00	NA	NA	NA	10.00	6.25	0.00	12.50	11.11	0.00	0.00	5.00	5.00	0.181690	0.660713
K	intron_retention	PITRM1	chr10	-	chr10:3180530-3181095				chr10:3180529-3180530;chr10:3181095-3181096		7.14	12.07	15.62	6.67	5.41	4.49	0.00	0.00	4.17	6.25	10.00	0.00	2.94	0.00	0.00	4.69	5.66	4.08	4.55	0.00	3.92	7.27	7.32	12.12	16.67	5.26	15.00	2.17	7.50	3.81	13.04	8.11	9.09	9.09	9.76	8.85	6.82	2.63	-4.19	0.963629	1.000000
N	jcn_only_AD	TOMM5	chr9	-	chr9:37588930-37592408;chr9:37588930-37592249;chr9:37588930-37592412;chr9:37588930-37592287	chr9:37588930-37592306		chr9:37592250-37592287;chr9:37592288-37592306;chr9:37592307-37592408;chr9:37592409-37592412	chr9:37592287-37592288;chr9:37592306-37592307;chr9:37592408-37592409;chr9:37592412-37592413		10.34	0.00	1.72	0.00	2.04	0.00	0.00	0.00	2.25	2.91	2.03	1.75	0.60	0.00	1.52	1.59	0.98	2.84	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	1.16	1.14	0.84	0.00	0.00	0.00	0.389919	0.657607
K	alternative_donor	AKT1S1	chr19	-	chr19:50376560-50379859;chr19:50376560-50380493	chr19:50376560-50380281		chr19:50379860-50380281;chr19:50380282-50380493	chr19:50380281-50380282;chr19:50380493-50380494		34.38	12.50	15.15	31.58	17.39	NA	19.05	23.08	22.22	23.53	18.18	NA	28.57	10.53	35.14	8.33	22.22	NA	NA	11.90	19.74	NA	7.41	15.79	16.67	18.52	34.29	29.41	6.25	8.57	12.50	45.71	18.75	12.50	30.56	17.86	18.75	15.51	-3.24	0.894593	0.977754
K	jcn_only_AA	PTBP1	chr19	+	chr19:797506-803560	chr19:797506-799412					100.00	100.00	100.00	NA	NA	NA	100.00	99.13	97.58	96.43	99.31	100.00	100.00	100.00	99.33	98.51	98.70	100.00	NA	95.65	NA	100.00	98.28	95.16	100.00	94.12	96.08	100.00	95.00	NA	100.00	100.00	NA	98.11	100.00	98.39	100.00	99.56	-0.44	0.141430	0.663989
N	alternative_acceptor	VSIG4	chrX	-	chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242252-65242682;chrX:65242343-65242682	chrX:65242009-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		33.64	25.58	32.89	38.12	28.54	35.44	16.10	30.95	45.65	16.87	15.73	16.58	14.98	24.19	50.00	19.11	12.58	14.10	30.31	35.82	47.62	42.07	27.23	30.08	28.72	37.50	25.56	29.63	20.94	24.65	55.56	56.72	30.40	30.65	28.38	27.82	27.15	34.73	7.58	0.047482	0.570243
K	intron_retention	ELMO3	chr16	+	chr16:67237313-67237399				chr16:67237312-67237313;chr16:67237399-67237400		0.00	5.13	0.00	0.00	0.00	2.17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	4.76	0.00	2.50	0.00	0.00	0.00	1.25	0.00	-1.25	0.834585	1.000000
N	jcn_only_AD	AHNAK	chr11	-	chr11:62259304-62302474;chr11:62259304-62301132	chr11:62259304-62284481		chr11:62284482-62301132;chr11:62301133-62302474	chr11:62301132-62301133;chr11:62302474-62302475		0.00	0.00	NA	0.00	0.00	1.64	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	2.27	0.00	5.21	0.00	NA	0.00	1.89	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	ZSWIM8	chr10	+	chr10:75560518-75560774				chr10:75560517-75560518;chr10:75560774-75560775		14.86	25.81	19.18	17.86	18.18	26.32	0.00	0.00	0.00	0.00	0.00	9.09	3.57	0.00	6.90	3.45	5.88	NA	12.70	20.34	18.52	15.56	12.50	23.33	9.38	17.39	13.43	18.52	9.30	15.38	20.69	18.33	13.64	20.97	13.70	26.76	11.04	16.12	5.09	0.878633	1.000000
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299154-23299261;chr14:23299150-23299261	chr14:23299158-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		14.29	9.09	10.53	0.00	8.82	3.85	0.00	NA	NA	0.00	0.00	NA	0.00	NA	16.67	0.00	6.45	NA	16.28	11.43	9.76	0.00	4.00	NA	14.71	0.00	0.00	NA	21.05	NA	0.00	12.50	12.24	0.00	0.00	23.08	10.66	5.71	-4.95	0.646960	0.818639
K	cassette	BABAM1,CTD-2278I10.6	chr19	+	chr19:17382465-17387303	chr19:17382465-17384712;chr19:17384834-17387303		chr19:17384713-17384833			96.00	90.00	100.00	91.67	92.31	NA	94.29	100.00	100.00	93.33	96.55	100.00	97.73	100.00	96.30	100.00	94.34	96.55	89.47	93.33	96.00	NA	96.00	NA	NA	85.71	90.32	NA	100.00	80.00	93.33	90.00	85.00	95.00	88.89	95.65	90.00	94.66	4.66	0.294892	0.709176
N	jcn_only_AD	ABCC3	chr17	+	chr17:48755956-48757158;chr17:48755581-48757158	chr17:48756936-48757158		chr17:48755581-48755955;chr17:48755956-48756935	chr17:48755580-48755581;chr17:48755955-48755956		29.41	7.69	9.17	NA	6.25	NA	0.00	0.00	NA	0.00	5.41	0.00	0.00	NA	0.00	0.00	0.00	NA	10.00	6.67	8.33	0.00	3.28	0.00	NA	33.33	13.70	0.00	15.00	0.00	17.65	11.48	0.00	0.00	10.53	6.67	0.00	17.65	17.65	0.095917	0.639657
N	alternative_donor	TOX4	chr14	+	chr14:21963421-21964703	chr14:21963552-21964703		chr14:21963421-21963551	chr14:21963420-21963421		86.11	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	96.97	100.00	100.00	0.00	0.206088	0.577393
N	coord_cassette	MAPKAP1	chr9	-	chr9:128230389-128305337	chr9:128230389-128246721;chr9:128246863-128268588;chr9:128268697-128305337		chr9:128246722-128246862;chr9:128268589-128268696			90.48	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.56	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	NA	94.83	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_donor	ARRB2	chr17	+	chr17:4622585-4623510;chr17:4622722-4623510	chr17:4622716-4623510		chr17:4622585-4622715;chr17:4622716-4622721	chr17:4622584-4622585;chr17:4622715-4622716		97.77	98.88	97.93	100.00	99.08	100.00	98.72	99.24	99.10	98.23	99.57	97.94	99.02	99.17	97.95	98.06	98.82	98.33	98.21	96.09	98.35	97.92	98.95	100.00	100.00	100.00	99.60	98.75	99.49	100.00	96.43	94.44	96.69	98.36	97.42	98.58	98.80	98.47	-0.33	0.569813	0.798196
N	cassette	PNPLA6	chr19	+	chr19:7619962-7620492	chr19:7619962-7620134;chr19:7620254-7620492		chr19:7620135-7620253			97.92	100.00	95.56	NA	90.91	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	96.55	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD		chr14	-	chr14:103406662-103410411	chr14:103406662-103410227		chr14:103410228-103410411	chr14:103410411-103410412		100.00	100.00	93.33	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	95.24	100.00	100.00	NA	100.00	NA	100.00	87.10	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
N	cassette	CPNE2	chr16	+	chr16:57168739-57179996;chr16:57161816-57179996	chr16:57168739-57171060,chr16:57161816-57171060;chr16:57171195-57179996		chr16:57171061-57171194			94.64	80.85	90.16	90.00	90.00	NA	95.65	98.00	95.65	100.00	98.61	97.56	98.57	97.06	100.00	100.00	97.62	94.44	100.00	97.50	100.00	92.86	94.94	96.43	100.00	88.37	95.45	100.00	98.36	100.00	89.66	95.24	90.00	91.67	100.00	100.00	97.11	95.85	-1.26	0.994152	0.998139
K	jcn_only_AD	AP2A2	chr11	+	chr11:932778-959436;chr11:946964-959436;chr11:933598-959436	chr11:926089-959436		chr11:926089-932777;chr11:932778-933597;chr11:933598-946963	chr11:926088-926089;chr11:932777-932778;chr11:933597-933598		100.00	100.00	100.00	NA	NA	NA	98.50	100.00	100.00	100.00	96.03	100.00	98.16	100.00	100.00	95.65	97.33	100.00	NA	100.00	NA	NA	100.00	91.67	100.00	100.00	100.00	NA	96.67	NA	NA	92.31	NA	100.00	94.59	100.00	99.25	100.00	0.75	0.184972	0.657607
K	intron_retention	ATP6AP1	chrX	+	chrX:153657521-153660175				chrX:153657520-153657521;chrX:153660175-153660176		0.53	2.33	0.88	7.14	0.00	NA	0.47	0.00	0.32	0.55	0.42	0.00	0.51	0.00	0.84	0.37	0.48	0.00	0.00	1.32	1.33	2.56	1.20	0.68	0.00	0.97	0.35	0.79	0.53	1.20	0.00	1.06	3.70	1.90	1.39	0.70	0.49	0.27	-0.22	0.890837	1.000000
K	alternative_donor	PDCD6	chr5	+	chr5:306870-311407	chr5:306876-311407		chr5:306870-306875	chr5:306869-306870		71.43	76.67	60.87	83.33	70.83	NA	70.59	60.98	67.31	68.42	67.07	71.43	74.44	77.42	62.07	66.67	62.20	70.59	58.33	61.29	73.47	63.89	61.76	60.87	88.24	76.92	74.55	80.56	63.16	80.00	77.14	72.73	69.44	75.00	67.74	75.61	72.52	74.18	1.66	0.693053	0.870386
K	intron_retention	VAV1	chr19	+	chr19:6828499-6828632				chr19:6828498-6828499;chr19:6828632-6828633		1.26	4.81	2.30	0.00	3.33	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	4.76	0.00	0.00	1.35	2.75	0.94	6.67	0.00	1.94	1.89	3.03	1.31	0.00	0.00	2.70	1.12	0.00	1.32	3.73	0.00	-3.73	0.385436	1.000000
N	jcn_only_AA		chr2	+	chr2:114728331-114764595;chr2:114728331-114757611;chr2:114728331-114785417;chr2:114728331-114745047	chr2:114728331-114759467		chr2:114745048-114757611;chr2:114757612-114759467;chr2:114759468-114764595;chr2:114764596-114785417	chr2:114757611-114757612;chr2:114759467-114759468;chr2:114764595-114764596;chr2:114785417-114785418		9.09	0.00	8.82	13.64	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	3.23	4.76	0.00	0.00	0.00	NA	0.00	NA	8.57	10.17	3.77	10.71	13.89	16.67	0.00	4.29	4.29	0.274051	0.663989
N	cassette	PLCB3	chr11	+	chr11:64033877-64035975;chr11:64033877-64034656	chr11:64033877-64033966;chr11:64034025-64035975,chr11:64034025-64034656		chr11:64033967-64034024			94.87	100.00	96.88	100.00	92.73	100.00	100.00	100.00	100.00	100.00	97.62	NA	100.00	100.00	100.00	100.00	100.00	NA	98.48	100.00	96.88	100.00	97.26	100.00	100.00	90.00	98.46	100.00	94.74	100.00	93.55	93.94	93.75	100.00	97.92	100.00	100.00	97.44	-2.56	0.285647	0.709176
K	intron_retention		chr9	+	chr9:140136474-140136947				chr9:140136473-140136474;chr9:140136947-140136948		6.13	3.45	6.92	1.61	2.75	4.44	0.00	0.00	1.35	0.38	0.34	0.63	0.28	0.00	0.52	0.41	0.00	0.73	6.06	4.81	5.49	5.71	1.28	3.36	0.00	1.52	2.59	0.00	1.55	2.74	14.88	16.57	10.94	4.60	3.57	2.74	1.87	3.17	1.30	0.944346	1.000000
N	alternative_donor	OGFR	chr20	+	chr20:61437156-61438888;chr20:61437614-61438888	chr20:61436383-61438888		chr20:61436383-61437155;chr20:61437156-61437613	chr20:61436382-61436383;chr20:61437155-61437156		98.06	100.00	97.75	100.00	100.00	100.00	98.36	98.75	98.29	99.18	100.00	98.69	97.30	98.88	97.69	98.08	98.86	98.49	100.00	98.15	100.00	98.11	99.17	97.52	100.00	97.55	98.53	97.50	100.00	98.64	99.38	98.44	100.00	98.21	96.55	94.69	100.00	98.45	-1.55	0.176189	0.563271
K	alternative_first_exon	RHOG	chr11	-	chr11:3849437-3861378,chr11:3849437-3861991;chr11:3849437-3859033;chr11:3849437-3862123;chr11:3849437-3851757	chr11:3849437-3861797	chr11:3859034-3859097;chr11:3862124-3862213;chr11:3851758-3851881	chr11:3861798-3862072			1.26	7.79	2.27	0.00	5.48	0.00	1.62	1.27	0.53	2.81	3.02	4.78	1.26	0.72	1.34	2.41	2.34	1.55	3.23	2.38	1.19	4.69	6.00	6.03	0.00	1.98	2.38	2.17	4.93	2.14	3.12	2.52	3.85	2.70	4.04	4.19	2.42	1.62	-0.80	0.358133	0.544826
N	jcn_only_AD	MYL6B	chr12	+	chr12:56549386-56551251;chr12:56549278-56551251;chr12:56549814-56551251	chr12:56549377-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		88.46	94.67	95.74	100.00	97.83	100.00	100.00	100.00	97.14	93.75	90.62	100.00	97.06	92.31	96.55	100.00	95.24	NA	94.20	95.00	95.54	90.91	100.00	100.00	92.79	94.74	96.72	100.00	100.00	95.65	85.00	91.49	92.75	100.00	100.00	92.00	94.44	93.53	-0.91	0.310250	0.657607
N	alternative_acceptor	CUL5,PHRF1	chr11	+	chr11:610348-610596;chr11:610348-610666	chr11:610348-610500		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		100.00	94.29	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	90.00	100.00	94.74	100.00	100.00	100.00	100.00	90.91	100.00	93.33	100.00	100.00	93.75	95.24	100.00	100.00	100.00	100.00	100.00	91.30	94.12	86.67	100.00	89.29	93.75	93.81	100.00	6.19	0.104266	0.598353
N	alternative_donor	MMD,RP11-51F16.8,STRADA	chr17	-	chr17:61781943-61783994	chr17:61781943-61782179		chr17:61782180-61783994	chr17:61783994-61783995		5.41	10.00	6.78	NA	0.00	NA	0.00	2.17	0.00	0.00	3.23	NA	2.86	2.44	3.70	7.14	2.63	NA	NA	4.35	5.56	NA	6.06	NA	9.09	5.13	6.98	6.25	7.69	6.67	4.17	4.08	NA	9.52	11.54	12.90	5.97	4.26	-1.71	0.574677	0.799662
K	alternative_last_exon	PRKX	chrX	-	chrX:3526981-3530217;chrX:3526987-3530217	chrX:3529376-3530217	chrX:3522411-3526986	chrX:3529263-3529375			21.43	4.17	23.08	NA	16.67	NA	15.62	42.11	20.00	21.74	30.00	41.94	13.51	45.45	NA	26.92	20.00	26.32	10.53	27.27	NA	20.00	15.79	33.33	0.00	18.18	20.00	23.08	13.33	16.67	NA	36.36	7.69	21.88	22.73	36.11	9.11	27.27	18.16	0.011438	0.161746
K	intron_retention	PDLIM7	chr5	-	chr5:176910984-176911070				chr5:176910983-176910984;chr5:176911070-176911071		3.55	8.77	3.55	4.00	2.78	5.48	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.48	3.70	3.82	12.50	5.71	0.00	0.00	2.65	6.33	0.00	1.98	0.00	10.38	6.94	5.97	2.38	5.31	2.17	2.74	3.10	0.36	0.999082	1.000000
K	intron_retention	TRAPPC13	chr5	+	chr5:64960212-64960330				chr5:64960211-64960212;chr5:64960330-64960331		0.00	0.00	0.00	7.69	7.14	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	3.57	NA	0.00	3.85	8.00	16.67	0.00	20.00	4.35	0.00	4.17	6.67	5.88	5.00	0.00	0.00	0.00	0.475035	1.000000
K	cassette	DGKZ	chr11	+	chr11:46391101-46392862	chr11:46391101-46391490;chr11:46391560-46392862		chr11:46391491-46391559			96.15	94.29	84.85	NA	NA	NA	97.33	100.00	96.30	94.44	96.55	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	86.96	93.33	NA	87.10	83.33	100.00	100.00	94.23	NA	91.30	NA	91.67	91.89	86.67	81.48	84.85	87.50	97.33	98.08	0.75	0.967753	0.991515
K	intron_retention	STRADA	chr17	-	chr17:61781408-61781700				chr17:61781407-61781408;chr17:61781700-61781701		27.27	30.56	31.58	NA	32.26	NA	10.34	6.82	5.66	8.33	5.56	NA	8.57	4.00	8.77	15.38	10.81	NA	41.67	27.27	12.50	NA	37.93	NA	61.54	18.00	33.33	21.43	26.32	18.18	20.83	24.00	36.36	16.67	33.33	21.88	33.46	19.41	-14.05	0.276259	1.000000
N	alternative_acceptor	NR1H3	chr11	+	chr11:47289907-47290100	chr11:47289907-47290012		chr11:47290013-47290100	chr11:47290100-47290101		3.14	2.13	2.99	2.06	2.72	1.93	0.00	0.00	0.54	0.00	0.00	0.00	0.00	0.23	0.75	0.00	0.00	0.00	1.36	1.34	1.31	2.34	3.00	1.38	5.19	1.95	2.06	1.16	1.81	2.50	1.78	1.76	2.23	1.62	1.75	1.28	1.75	1.56	-0.19	0.665278	0.878584
N	alternative_donor	C6orf48	chr6	+	chr6:31790079-31803187;chr6:31785337-31803187;chr6:31802835-31803187;chr6:31802753-31803187	chr6:31802978-31803187		chr6:31785337-31790078;chr6:31790079-31802752;chr6:31802753-31802834;chr6:31802835-31802977	chr6:31785336-31785337;chr6:31790078-31790079;chr6:31802752-31802753;chr6:31802834-31802835		86.36	90.91	100.00	81.25	88.24	88.10	90.91	87.10	100.00	90.91	NA	85.00	100.00	96.30	100.00	94.74	NA	82.35	87.50	82.35	90.48	71.43	88.89	82.35	84.21	88.24	94.74	91.67	92.31	82.86	78.95	92.86	90.91	95.00	85.71	77.78	90.91	86.73	-4.18	0.223790	0.597172
K	jcn_only_AD	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139917820-139918503	chr5:139917847-139918503		chr5:139917820-139917846	chr5:139917819-139917820		73.21	86.27	78.49	66.67	72.92	73.33	85.19	84.21	88.57	80.95	92.31	91.67	80.56	91.67	77.78	80.77	76.47	76.92	76.00	62.50	70.59	77.78	69.70	69.23	100.00	80.95	71.01	82.76	74.07	80.56	52.50	66.67	77.78	71.19	77.42	70.59	82.88	77.08	-5.80	0.180765	0.657607
N	alternative_donor	QSOX1	chr1	+	chr1:180166026-180166467;chr1:180166012-180166467;chr1:180165735-180166467	chr1:180165930-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		9.38	8.56	8.78	4.44	18.44	5.41	3.15	1.90	4.62	5.56	3.76	14.81	2.26	5.73	3.76	17.95	18.24	4.71	1.80	10.14	6.94	11.94	2.29	8.57	2.50	11.85	5.69	3.77	1.75	2.67	8.25	9.55	1.43	23.90	14.87	11.61	2.38	8.82	6.44	0.031622	0.340561
K	intron_retention		chr11	+	chr11:824437-824522				chr11:824436-824437;chr11:824522-824523		7.04	10.25	6.79	6.00	3.76	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	7.28	6.85	7.94	8.82	4.46	0.00	4.88	7.81	3.90	0.00	3.28	0.00	22.48	9.48	17.67	4.88	6.90	2.08	6.08	6.95	0.87	0.989523	1.000000
N	jcn_only_AA		chr10	-	chr10:73578091-73578373;chr10:73577252-73578373;chr10:73576165-73578373;chr10:73577460-73578373	chr10:73577388-73578373					40.00	0.00	48.15	NA	0.00	0.00	45.16	31.03	26.92	48.15	31.91	12.90	26.92	25.00	26.67	34.38	27.08	0.00	7.69	30.43	31.25	30.43	20.83	25.00	0.00	23.33	17.65	18.18	24.14	25.00	25.64	29.03	10.00	40.74	23.81	28.57	8.85	28.04	19.19	0.110845	0.663989
N	alternative_acceptor	NARF	chr17	+	chr17:80441656-80442144;chr17:80441656-80442688	chr17:80441656-80442133		chr17:80442134-80442144;chr17:80442145-80442688	chr17:80442144-80442145;chr17:80442688-80442689		8.89	6.86	10.24	12.50	7.14	10.00	0.00	2.78	4.65	0.00	2.86	6.67	4.55	8.33	9.68	7.14	2.56	0.00	5.48	5.26	13.56	16.67	8.82	13.89	5.95	10.81	11.50	12.50	9.09	14.58	8.06	7.25	3.70	13.79	11.76	16.67	5.02	8.20	3.18	0.085750	0.586065
K	cassette	WDR45	chrX	-	chrX:48932572-48933022	chrX:48932572-48932794;chrX:48932941-48933022		chrX:48932795-48932940			100.00	92.86	95.74	100.00	96.67	100.00	100.00	96.97	100.00	NA	100.00	92.31	100.00	100.00	100.00	NA	100.00	NA	97.78	100.00	100.00	100.00	91.67	100.00	94.12	100.00	97.44	100.00	93.94	100.00	97.92	96.36	94.23	100.00	100.00	100.00	96.00	100.00	4.00	0.103041	0.683797
K	cassette	SYF2	chr1	-	chr1:25554727-25558594	chr1:25554727-25555488;chr1:25555615-25558594		chr1:25555489-25555614			97.47	90.91	99.04	100.00	100.00	100.00	94.37	97.85	98.06	96.30	100.00	95.77	97.26	98.46	97.83	98.59	98.68	94.52	91.67	95.60	95.00	93.18	97.14	95.56	100.00	95.83	100.00	97.56	100.00	96.43	95.10	97.04	100.00	95.83	97.30	100.00	95.81	96.65	0.84	0.577858	0.835830
K	intron_retention	RP1-130H16.18,TBC1D10A	chr22	-	chr22:30688841-30689639				chr22:30688840-30688841;chr22:30689639-30689640		15.38	0.00	8.57	9.09	4.00	NA	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	4.44	0.00	5.26	0.00	10.00	25.00	6.90	6.25	4.35	8.70	0.00	9.09	9.52	NA	7.14	NA	7.14	10.00	20.00	0.00	10.53	4.00	0.00	8.12	8.12	0.207074	1.000000
K	intron_retention		chr15	-	chr15:68486451-68489777				chr15:68486450-68486451;chr15:68489777-68489778		17.24	5.71	38.24	0.00	5.71	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	4.41	4.76	8.33	NA	9.09	NA	0.00	16.67	47.83	0.00	2.56	15.38	15.38	33.33	1.23	16.67	14.29	17.39	0.61	10.07	9.46	0.741372	1.000000
K	intron_retention	RIC8A	chr11	+	chr11:212512-212614				chr11:212511-212512;chr11:212614-212615		1.49	0.00	1.64	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	2.38	0.00	1.85	3.70	0.00	2.56	3.51	0.00	2.08	0.00	4.76	5.26	0.00	2.08	3.70	1.45	0.00	1.79	1.79	0.384749	1.000000
K	intron_retention	BCL2L12	chr19	+	chr19:50172195-50172280				chr19:50172194-50172195;chr19:50172280-50172281		10.53	7.69	7.89	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.00	18.52	8.82	NA	3.23	NA	0.00	4.55	0.00	NA	0.00	0.00	23.53	19.61	19.23	0.00	0.00	0.00	3.85	7.54	3.69	0.826071	1.000000
K	intron_retention	KMO	chr1	+	chr1:241752133-241753313				chr1:241752132-241752133;chr1:241753313-241753314		0.00	0.00	0.00	0.00	1.30	0.00	3.45	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.81	0.00	0.00	0.00	1.87	3.06	1.40	NA	0.00	2.00	1.59	1.67	0.00	1.37	2.63	9.52	1.69	1.69	0.78	0.00	0.00	0.00	0.527768	1.000000
K	jcn_only_AD	COX7C	chr5	+	chr5:85914148-85915169;chr5:85913871-85915169	chr5:85913948-85915169		chr5:85913871-85913947;chr5:85913948-85914147	chr5:85913870-85913871;chr5:85913947-85913948		90.97	88.36	92.10	91.20	90.16	90.84	90.18	92.50	91.07	87.03	90.62	90.76	89.91	88.29	91.41	87.93	88.02	90.20	91.03	88.33	91.94	88.22	88.67	90.43	89.66	91.64	90.13	89.63	87.83	90.73	87.84	88.62	89.45	90.59	90.82	91.60	89.78	89.65	-0.13	0.860693	0.930693
N	jcn_only_AA	TMEM150B	chr19	-	chr19:55831972-55834015;chr19:55832462-55834015;chr19:55833903-55834015;chr19:55832368-55834015;chr19:55832788-55834015;chr19:55832413-55834015;chr19:55833470-55834015	chr19:55832476-55834015		chr19:55831972-55832367;chr19:55832368-55832412;chr19:55832413-55832461;chr19:55832462-55832475;chr19:55832476-55832787;chr19:55832788-55833469;chr19:55833470-55833902	chr19:55831971-55831972;chr19:55832367-55832368;chr19:55832412-55832413;chr19:55832461-55832462;chr19:55832475-55832476;chr19:55832787-55832788;chr19:55833469-55833470		0.00	0.00	0.00	NA	0.00	NA	0.00	1.62	1.63	9.09	0.00	3.70	2.25	1.15	1.86	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00	0.00	0.00	0.00	0.00	2.17	NA	0.00	0.00	0.00	0.00	0.57	0.57	0.725986	0.877626
K	intron_retention	GSDMD	chr8	+	chr8:144643275-144643539				chr8:144643274-144643275;chr8:144643539-144643540		19.05	29.79	23.96	20.83	23.81	24.05	6.25	2.50	4.62	NA	0.00	13.04	5.88	10.94	12.20	16.67	0.00	4.35	38.89	35.71	28.75	NA	46.15	62.50	46.15	34.74	49.12	63.64	27.27	42.42	37.84	45.88	48.15	50.00	NA	51.22	34.34	26.90	-7.45	0.944842	1.000000
N	cassette	CLEC4A	chr12	+	chr12:8276557-8288180;chr12:8278274-8289383;chr12:8278274-8288180	chr12:8276557-8281859,chr12:8278274-8281859;chr12:8281959-8289383,chr12:8281959-8288180		chr12:8281860-8281958			93.18	92.75	91.03	100.00	96.97	NA	81.33	88.46	NA	100.00	100.00	100.00	91.67	92.31	NA	92.11	96.55	93.33	100.00	95.24	92.31	100.00	94.12	100.00	100.00	89.74	84.35	90.70	88.10	100.00	100.00	89.55	87.50	95.00	96.36	100.00	92.21	92.75	0.53	0.788182	0.936947
K	intron_retention		chr1	-	chr1:1190868-1191424				chr1:1190867-1190868;chr1:1191424-1191425		5.41	8.24	8.20	3.28	1.00	2.63	0.00	0.00	0.00	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.05	0.00	4.84	4.76	5.06	3.92	5.00	0.00	4.00	0.00	2.70	1.43	3.57	2.56	3.70	2.56	4.35	3.66	3.88	0.00	-3.88	0.635014	1.000000
K	intron_retention	CYTH2	chr19	+	chr19:48978207-48981325				chr19:48978206-48978207;chr19:48981325-48981326		10.00	16.13	9.52	14.29	8.70	36.84	0.00	2.13	0.00	0.00	0.00	3.57	0.00	0.00	4.00	5.00	0.00	2.56	12.50	3.03	8.00	0.00	6.90	0.00	NA	6.82	4.65	0.00	4.17	6.25	11.76	6.25	17.39	8.70	11.54	15.79	12.50	4.92	-7.58	0.969058	1.000000
N	jcn_only_AA	MIIP	chr1	+	chr1:12089339-12089821;chr1:12089339-12089790	chr1:12089339-12089897		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		0.00	6.82	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365065-62366056;chr20:62365092-62366056	chr20:62365157-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	1.61	0.00	0.00	3.12	0.00	0.00	1.37	0.00	0.00	0.00	0.225771	0.657607
K	cassette	PLEC	chr8	-	chr8:144996564-145000951	chr8:144996564-144996671;chr8:145000053-145000951		chr8:144996672-145000052			76.19	71.43	86.30	NA	69.23	NA	89.76	91.94	93.94	83.51	93.09	86.11	84.88	93.24	100.00	81.90	83.83	76.74	76.67	58.14	100.00	69.23	77.93	64.29	93.38	86.67	96.88	87.50	90.79	NA	57.14	79.31	71.05	66.00	75.00	65.85	80.78	81.43	0.66	0.620176	0.862352
N	alternative_acceptor	MAPK8IP3	chr16	+	chr16:31336353-31336664	chr16:31336353-31336583		chr16:31336584-31336664	chr16:31336664-31336665		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
N	cassette	DNAJC21	chr5	+	chr5:34941289-34945865	chr5:34941289-34944971;chr5:34945131-34945865		chr5:34944972-34945130			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.36	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.31	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	jcn_only_AA	ANAPC2	chr9	-	chr9:140069968-140070159;chr9:140069921-140070159	chr9:140069925-140070159		chr9:140069921-140069924;chr9:140069925-140069967	chr9:140069920-140069921;chr9:140069924-140069925		100.00	100.00	100.00	100.00	100.00	91.18	100.00	NA	100.00	100.00	77.78	NA	93.33	NA	100.00	91.67	100.00	NA	94.44	100.00	93.18	100.00	100.00	100.00	100.00	81.82	100.00	93.75	100.00	100.00	100.00	100.00	94.44	100.00	100.00	95.45	97.22	100.00	2.78	0.757619	0.891694
K	intron_retention	WBP2	chr17	-	chr17:73842116-73842416				chr17:73842115-73842116;chr17:73842416-73842417		98.02	100.00	96.23	97.67	97.73	95.44	96.91	98.14	97.70	95.59	100.00	97.32	100.00	100.00	97.75	97.54	100.00	94.12	91.90	94.66	94.40	96.53	100.00	96.38	100.00	100.00	97.26	98.09	97.51	98.51	96.62	95.93	94.94	100.00	98.43	97.97	98.45	98.08	-0.38	0.987416	1.000000
K	intron_retention		chr1	+	chr1:44432455-44432601				chr1:44432454-44432455;chr1:44432601-44432602		0.00	0.00	0.00	5.56	7.14	10.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	2.78	0.00	0.00	6.25	9.68	NA	0.00	0.00	0.00	5.00	0.00	9.09	7.14	4.17	3.45	6.67	3.70	5.26	0.00	0.00	0.00	0.794468	1.000000
N	alternative_donor	PTOV1	chr19	+	chr19:50360384-50360949	chr19:50360388-50360949		chr19:50360384-50360387	chr19:50360383-50360384		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	cassette	RHOC	chr1	-	chr1:113246429-113249699	chr1:113246429-113247674;chr1:113247791-113249699		chr1:113247675-113247790			22.86	9.52	17.86	19.05	17.78	20.41	32.86	43.48	47.69	41.51	36.54	41.56	38.75	55.05	44.44	49.00	31.67	40.91	15.79	25.32	29.51	30.59	17.24	27.27	41.67	22.92	18.18	29.63	26.32	39.34	25.00	21.43	17.39	25.00	26.53	29.91	25.12	25.16	0.04	0.428333	0.736120
K	cassette	RANGAP1	chr22	-	chr22:41654111-41660667	chr22:41654111-41657449;chr22:41657585-41660667		chr22:41657450-41657584			100.00	100.00	100.00	NA	100.00	NA	97.83	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.55	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.43	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention	TRAPPC12	chr2	+	chr2:3481567-3482616				chr2:3481566-3481567;chr2:3482616-3482617		15.79	19.05	11.11	19.05	5.56	NA	0.00	0.00	0.00	NA	3.12	NA	0.00	0.00	3.57	0.00	0.00	NA	7.41	14.29	7.89	8.33	6.25	NA	9.26	8.33	7.50	11.11	7.32	6.67	5.26	5.41	3.23	6.25	5.26	15.38	5.32	6.79	1.47	0.964916	1.000000
K	jcn_only_AA	RAD23A,TIMM50	chr19	+	chr19:13059173-13059327	chr19:13059173-13059310		chr19:13059311-13059327	chr19:13059327-13059328		95.96	100.00	98.53	92.73	93.55	90.48	99.27	100.00	95.97	97.66	98.21	99.01	99.49	100.00	96.95	97.07	98.45	100.00	100.00	94.29	100.00	94.81	96.30	94.87	100.00	100.00	96.88	93.75	95.33	100.00	100.00	93.55	94.59	94.40	95.73	94.49	99.75	100.00	0.25	0.712930	0.873712
K	alternative_acceptor	BLOC1S2	chr10	-	chr10:102045971-102046361	chr10:102046090-102046361		chr10:102045971-102046089	chr10:102045970-102045971		3.39	0.00	1.72	0.00	0.00	NA	3.53	6.59	3.67	1.75	1.71	2.50	0.91	5.71	4.72	2.35	3.60	0.00	4.55	3.75	1.89	1.41	1.47	0.00	0.00	6.49	2.63	1.54	0.94	2.86	5.71	2.96	0.00	2.06	2.80	1.54	0.46	5.71	5.25	0.004554	0.405868
K	intron_retention	CDK11A	chr1	-	chr1:1635380-1635477				chr1:1635379-1635380;chr1:1635477-1635478		17.78	8.82	11.76	18.18	16.13	23.81	0.00	5.88	7.69	NA	NA	NA	0.00	0.00	7.69	NA	16.67	NA	3.23	6.52	0.00	8.70	10.34	11.11	11.11	14.81	13.21	13.33	8.00	5.26	11.32	14.29	15.38	11.11	11.90	17.07	6.03	8.92	2.89	0.659208	1.000000
K	intron_retention	GLYR1	chr16	-	chr16:4854150-4854522				chr16:4854149-4854150;chr16:4854522-4854523		77.36	87.80	80.49	NA	85.19	NA	78.46	77.50	77.78	83.33	85.45	89.47	85.33	72.34	83.33	74.07	79.66	62.50	70.00	78.72	83.33	90.32	86.27	82.61	NA	70.59	83.08	84.62	87.18	72.73	88.00	83.82	76.92	84.09	89.09	79.59	78.46	77.43	-1.03	0.461827	1.000000
K	intron_retention	RASSF4	chr10	+	chr10:45465713-45467220				chr10:45465712-45465713;chr10:45467220-45467221		9.41	31.58	12.72	NA	NA	NA	3.08	3.60	4.15	5.21	1.99	7.80	9.13	5.05	8.35	5.62	6.25	13.33	12.50	10.69	12.24	20.59	12.50	20.51	0.00	11.17	13.97	32.61	12.24	26.76	9.52	4.46	14.29	11.27	12.66	19.29	10.82	9.46	-1.35	0.808284	1.000000
N	jcn_only_AA	AP1B1	chr22	-	chr22:29759096-29763195;chr22:29762177-29763195;chr22:29762914-29763195	chr22:29755949-29763195					0.00	0.00	0.00	NA	NA	NA	0.00	6.90	0.00	0.00	1.44	0.00	1.28	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	4.92	8.33	0.00	0.00	5.26	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.492126	0.749150
K	jcn_only_AA	MBD1	chr18	-	chr18:47796182-47799046;chr18:47797911-47799046	chr18:47796189-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		24.32	29.41	33.33	33.33	29.17	NA	21.21	25.81	30.00	29.41	33.33	45.83	25.00	26.19	12.12	25.64	36.11	47.62	0.00	16.67	23.81	18.75	21.21	25.00	NA	33.33	16.67	42.86	37.93	43.48	20.69	22.22	14.29	27.27	23.68	35.71	21.21	25.06	3.85	0.293605	0.663989
K	cassette	SMPD1	chr11	+	chr11:6413387-6414846;chr11:6413427-6414846	chr11:6413427-6414445,chr11:6413387-6414445;chr11:6414618-6414846		chr11:6414446-6414617			100.00	100.00	90.91	NA	83.33	NA	95.65	100.00	95.35	96.15	96.97	100.00	97.56	100.00	100.00	100.00	95.74	100.00	100.00	93.75	96.43	94.44	93.94	100.00	NA	90.70	92.31	100.00	90.32	100.00	94.87	97.14	80.00	97.37	85.71	93.18	97.56	97.44	-0.12	0.658402	0.874582
K	cassette	HAGH	chr16	-	chr16:1873039-1876712	chr16:1873039-1876507;chr16:1876604-1876712		chr16:1876508-1876603			26.67	14.29	12.20	NA	13.33	NA	15.91	16.00	10.87	14.29	11.11	18.18	11.11	13.64	9.80	10.71	8.16	16.67	8.33	16.67	23.08	NA	9.30	NA	26.67	29.41	14.71	18.18	12.50	NA	14.29	12.00	15.38	10.00	11.76	15.38	14.84	16.34	1.50	0.296236	0.709176
N	alternative_acceptor	SOD2	chr6	-	chr6:160103618-160105885;chr6:160100331-160105885;chr6:160016237-160105885	chr6:160103671-160105885		chr6:160016237-160100330;chr6:160100331-160103617;chr6:160103618-160103670	chr6:160016236-160016237;chr6:160100330-160100331;chr6:160103617-160103618		95.08	100.00	95.79	100.00	100.00	99.79	NA	97.87	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	95.38	97.32	100.00	100.00	100.00	100.00	88.46	100.00	100.00	100.00	99.56	93.02	95.24	100.00	100.00	100.00	100.00	100.00	95.23	-4.77	0.027475	0.546324
K	cassette	SCPEP1	chr17	+	chr17:55074417-55078215	chr17:55074417-55075734;chr17:55075860-55078215		chr17:55075735-55075859			98.00	100.00	98.85	100.00	97.60	100.00	96.95	94.93	98.14	95.42	97.06	97.30	98.31	98.06	100.00	97.09	95.33	96.49	94.03	97.22	95.71	99.02	98.97	97.45	100.00	98.65	98.92	97.73	97.59	97.08	96.50	97.79	95.50	98.48	98.11	98.15	97.63	97.61	-0.02	0.838976	0.946167
K	intron_retention	TBRG4	chr7	-	chr7:45143043-45143697				chr7:45143042-45143043;chr7:45143697-45143698		9.09	4.55	26.32	NA	15.79	NA	0.00	0.00	2.78	0.00	2.50	0.00	5.71	0.00	5.88	2.33	2.94	0.00	NA	NA	0.00	16.67	29.41	22.22	NA	NA	5.56	0.00	20.00	4.76	0.00	11.76	5.88	16.67	17.65	12.20	5.13	0.00	-5.13	0.730206	1.000000
N	cassette	STK40	chr1	-	chr1:36826942-36851323;chr1:36828258-36851323;chr1:36826963-36851323;chr1:36826942-36851754	chr1:36828258-36833452,chr1:36826963-36833452,chr1:36826942-36833452;chr1:36833686-36851754,chr1:36833686-36851323		chr1:36833453-36833685			22.58	5.26	28.21	NA	NA	NA	12.05	11.40	22.64	28.29	17.44	31.58	14.29	19.67	26.23	30.43	17.28	28.83	NA	16.13	NA	31.25	21.52	37.14	7.14	14.89	18.52	33.33	25.00	31.58	27.78	13.33	NA	29.63	22.09	32.26	9.60	17.90	8.30	0.022117	0.398111
K	alternative_first_exon	PPP2R4	chr9	+	chr9:131901929-131904723;chr9:131904362-131904723;chr9:131899972-131904723;chr9:131902431-131904723	chr9:131904198-131904723	chr9:131901661-131901928;chr9:131904233-131904361;chr9:131899871-131899971;chr9:131902287-131902430	chr9:131903925-131904197			1.08	0.00	4.84	NA	4.17	NA	1.14	0.60	1.75	2.86	3.06	0.00	1.92	0.00	0.91	0.00	3.74	0.00	NA	0.00	3.45	0.00	3.92	0.00	0.00	0.00	3.95	8.33	4.35	0.00	0.00	1.54	0.00	4.35	0.00	2.04	0.00	0.00	0.00	0.477148	0.621456
K	cassette	YIPF3	chr6	-	chr6:43481372-43483626	chr6:43481372-43483343;chr6:43483440-43483626		chr6:43483344-43483439			98.08	100.00	100.00	NA	100.00	NA	98.00	100.00	100.00	97.44	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	91.67	100.00	95.00	100.00	100.00	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	99.04	-0.96	0.889383	0.966777
K	intron_retention	METTL17	chr14	+	chr14:21464871-21464943				chr14:21464870-21464871;chr14:21464943-21464944		28.00	40.41	44.12	44.44	39.47	33.33	25.00	NA	NA	NA	30.77	NA	29.17	NA	41.67	40.00	43.75	NA	31.82	35.00	38.33	69.23	43.64	40.00	31.20	33.33	44.83	NA	48.89	37.50	40.00	32.61	31.07	23.08	46.67	36.36	31.13	34.16	3.03	0.979502	1.000000
K	alternative_last_exon	SYS1,SYS1-DBNDD2	chr20	+	chr20:43994327-44010530;chr20:43994327-44028329;chr20:43994327-44037099;chr20:43994327-44002933	chr20:43994327-43995514	chr20:44028330-44028391;chr20:44037100-44037246;chr20:44002934-44005438	chr20:43995515-43997855			93.33	91.67	93.18	95.00	96.97	97.06	97.73	96.55	93.62	97.37	97.92	96.00	96.67	96.00	97.14	97.62	96.97	95.83	95.24	94.12	97.14	93.33	96.55	100.00	95.83	100.00	92.31	94.44	96.88	100.00	95.00	96.55	87.88	96.00	96.55	96.97	95.53	95.50	-0.03	0.379203	0.544646
N	jcn_only_AD	RPL34	chr4	+	chr4:109541958-109543106;chr4:109541869-109543106;chr4:109542102-109543106	chr4:109541757-109543106		chr4:109541757-109541868;chr4:109541869-109541957;chr4:109541958-109542101	chr4:109541756-109541757;chr4:109541868-109541869;chr4:109541957-109541958		78.57	89.66	88.37	89.60	91.82	92.54	92.96	85.96	92.37	81.25	87.76	90.82	93.47	91.23	89.95	91.65	88.28	84.21	88.36	77.27	86.30	85.77	92.20	91.85	93.49	87.14	89.25	92.98	96.74	93.61	81.05	84.39	87.67	84.80	85.10	91.97	91.31	83.50	-7.81	0.019386	0.334122
N	jcn_only_AA	SH3BP1	chr22	+	chr22:38040968-38041338;chr22:38040968-38041371	chr22:38040968-38041408		chr22:38041339-38041371;chr22:38041372-38041408	chr22:38041371-38041372;chr22:38041408-38041409		0.00	6.78	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	ACP5	chr19	-	chr19:11688495-11689658;chr19:11689010-11689658	chr19:11689010-11689399,chr19:11688495-11689399;chr19:11689580-11689658		chr19:11689400-11689579			30.77	15.32	18.18	25.00	20.87	NA	41.13	23.53	35.29	30.00	36.46	32.65	39.47	NA	NA	29.17	30.53	31.58	22.86	NA	29.27	16.22	24.57	12.90	16.00	14.29	NA	25.00	31.54	18.42	23.53	34.78	17.78	17.24	18.29	19.51	20.32	23.53	3.21	0.694996	0.887764
K	intron_retention		chr17	-	chr17:7530112-7530460				chr17:7530111-7530112;chr17:7530460-7530461		28.87	29.09	38.89	25.00	14.89	16.67	41.67	24.00	NA	NA	NA	NA	21.74	11.67	17.24	8.70	10.53	NA	23.23	22.50	24.00	40.00	16.67	26.32	22.12	43.75	52.17	27.50	13.64	25.00	36.49	31.76	27.74	26.42	20.37	36.73	25.48	26.44	0.95	0.765556	1.000000
K	intron_retention	CHTOP	chr1	+	chr1:153610925-153614718				chr1:153610924-153610925;chr1:153614718-153614719		10.00	0.00	17.14	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	3.03	4.00	4.76	3.23	0.00	0.00	0.00	9.09	0.00	12.50	2.70	5.56	NA	6.90	4.00	0.00	2.94	0.00	0.00	6.67	0.00	11.11	16.67	11.76	0.00	5.45	5.45	0.206897	1.000000
N	jcn_only_AA	RBM26	chr13	-	chr13:79895437-79896483;chr13:79894846-79896483;chr13:79889126-79896483	chr13:79889129-79896483		chr13:79889126-79889128;chr13:79889129-79894845;chr13:79894846-79895436	chr13:79889125-79889126;chr13:79889128-79889129;chr13:79894845-79894846		0.00	4.76	8.70	NA	0.00	NA	11.76	18.18	0.00	0.00	4.00	NA	4.55	7.69	4.17	8.70	11.11	NA	0.00	11.76	4.76	0.00	0.00	NA	0.00	0.00	8.33	0.00	0.00	6.67	NA	8.70	0.00	4.55	0.00	0.00	2.27	7.69	5.42	0.350337	0.663989
K	intron_retention	TMEM259	chr19	-	chr19:1012188-1012461				chr19:1012187-1012188;chr19:1012461-1012462		17.39	27.78	24.17	NA	30.30	NA	3.03	1.61	4.60	8.96	3.66	0.00	11.24	8.00	10.81	12.16	8.05	4.55	21.05	11.54	27.78	23.53	29.33	22.22	26.92	11.11	22.02	31.82	30.91	33.33	14.89	20.79	37.50	24.66	18.92	20.00	23.98	11.32	-12.66	0.196211	1.000000
K	jcn_only_AA	HCK	chr20	+	chr20:30661165-30661521	chr20:30661165-30661518		chr20:30661519-30661521	chr20:30661521-30661522		78.29	79.69	76.06	78.12	81.58	NA	84.07	81.53	82.56	80.70	81.05	83.28	78.05	81.45	81.16	82.01	81.90	85.86	80.77	77.54	77.70	79.61	72.86	82.24	57.14	79.19	78.94	86.46	75.90	81.97	82.02	76.99	72.73	84.67	75.47	79.40	78.87	80.32	1.45	0.302768	0.663989
K	cassette	MARK3	chr14	+	chr14:103946828-103969218	chr14:103946828-103958113;chr14:103958372-103969218		chr14:103958114-103958371			100.00	98.08	95.51	89.80	92.54	88.10	97.37	95.92	100.00	92.31	96.30	92.31	100.00	100.00	96.36	95.16	96.23	93.62	92.68	100.00	98.31	91.84	98.77	97.83	100.00	100.00	100.00	100.00	97.14	96.10	96.67	96.74	93.48	91.43	95.00	95.18	97.72	100.00	2.28	0.260750	0.709176
K	intron_retention	ARFRP1	chr20	-	chr20:62333253-62333487				chr20:62333252-62333253;chr20:62333487-62333488		5.13	0.00	24.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	4.35	0.00	0.00	0.00	2.00	6.67	8.33	7.89	0.00	3.45	8.70	0.00	0.00	2.63	0.00	4.35	0.00	0.00	4.00	6.98	0.00	0.00	0.00	0.477330	1.000000
N	alternative_donor	SGF29	chr16	+	chr16:28601540-28601616	chr16:28601547-28601616		chr16:28601540-28601546	chr16:28601539-28601540		100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	80.00	91.67	NA	100.00	NA	NA	100.00	100.00	100.00	0.00	0.391002	0.657675
N	alternative_donor	NPEPL1,STX16-NPEPL1	chr20	+	chr20:57282257-57287534	chr20:57287347-57287534		chr20:57282257-57287346	chr20:57282256-57282257		3.85	2.04	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	3.12	0.00	3.12	0.00	0.00	5.26	0.00	0.00	2.70	0.00	1.79	4.76	2.08	6.25	2.78	0.00	0.00	3.03	0.00	8.33	11.11	9.09	0.90	1.93	1.03	0.308307	0.650093
N	alternative_donor	MICAL1	chr6	-	chr6:109767616-109767881;chr6:109767616-109767898	chr6:109767616-109767885		chr6:109767882-109767885;chr6:109767886-109767898	chr6:109767885-109767886;chr6:109767898-109767899		1.45	2.86	0.00	0.00	2.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	0.00	0.00	0.00	0.00	1.33	2.44	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.72	0.589196	0.799662
K	cassette	CCDC53	chr12	-	chr12:102439898-102455025	chr12:102439898-102443966;chr12:102444070-102455025		chr12:102443967-102444069			0.00	0.00	2.13	NA	4.35	NA	6.52	2.70	3.03	2.70	1.67	2.63	8.51	0.00	7.02	4.35	4.08	6.67	NA	2.78	0.00	0.00	3.03	4.00	NA	2.17	3.57	0.00	6.67	5.56	4.00	6.06	10.00	9.09	9.09	7.14	7.51	2.44	-5.08	0.143062	0.709176
K	cassette	MAPK3	chr16	-	chr16:30126030-30127956	chr16:30126030-30126915;chr16:30126967-30127956		chr16:30126916-30126966			4.76	12.94	10.00	11.11	6.15	5.41	12.50	13.04	8.89	9.09	18.60	10.34	9.76	8.00	8.33	15.38	7.50	0.00	8.47	3.70	10.00	0.00	5.56	6.25	11.93	4.00	5.00	0.00	4.44	7.41	0.00	20.00	6.90	11.11	7.69	10.00	10.84	4.38	-6.46	0.049112	0.563564
N	jcn_only_AA		chr14	+	chr14:23944852-23944960	chr14:23944852-23944934		chr14:23944935-23944960	chr14:23944960-23944961		100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_acceptor	CD37	chr19	+	chr19:49842671-49843672;chr19:49842671-49842914	chr19:49842671-49843507		chr19:49842915-49843507;chr19:49843508-49843672	chr19:49843507-49843508;chr19:49843672-49843673		70.73	81.71	70.73	90.41	88.21	90.34	84.62	87.14	92.31	89.58	88.73	95.45	86.36	89.41	80.00	91.89	88.33	96.55	81.92	74.55	83.33	83.33	85.94	91.89	86.09	78.00	74.47	84.21	87.65	90.62	74.51	71.74	87.22	87.23	81.67	86.52	85.36	76.28	-9.08	0.133453	0.629354
K	intron_retention	THEMIS2	chr1	+	chr1:28209555-28211805				chr1:28209554-28209555;chr1:28211805-28211806		25.45	26.19	24.80	18.18	12.82	20.00	1.22	3.68	2.49	5.13	1.19	0.00	1.43	2.03	3.38	1.89	0.00	0.00	16.67	25.23	11.11	NA	17.19	26.19	NA	15.20	19.30	13.04	9.59	11.22	11.94	19.80	36.36	32.61	21.62	20.00	16.67	13.57	-3.10	0.923998	1.000000
N	alternative_donor	CIRBP	chr19	+	chr19:1271467-1271549;chr19:1271365-1271549	chr19:1271389-1271549		chr19:1271365-1271388;chr19:1271389-1271466	chr19:1271364-1271365;chr19:1271388-1271389		5.00	4.17	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.25	0.00	5.88	0.00	4.76	6.25	0.00	0.00	0.00	1.96	2.22	3.45	7.69	0.00	3.33	0.00	0.98	0.98	0.602090	0.811276
K	intron_retention	HRAS	chr11	-	chr11:532523-532630				chr11:532522-532523;chr11:532630-532631		15.38	15.68	25.00	15.52	19.61	10.20	7.41	9.09	20.00	15.15	12.82	0.00	6.45	19.05	21.05	11.11	8.62	5.26	20.66	14.29	15.58	13.79	30.65	6.67	25.70	8.33	18.75	15.15	20.00	16.67	28.12	32.14	25.40	17.65	14.55	14.71	18.17	14.84	-3.34	0.981970	1.000000
K	intron_retention	SNHG15	chr7	-	chr7:45023646-45023955				chr7:45023645-45023646;chr7:45023955-45023956		17.14	5.26	18.07	11.02	15.15	10.84	NA	0.00	4.98	7.14	10.00	5.26	NA	10.34	4.26	7.87	8.70	6.67	5.56	20.00	11.40	24.21	29.03	25.53	0.00	18.87	13.33	11.76	23.81	18.01	17.57	12.74	16.22	17.31	26.09	24.58	5.41	17.36	11.95	0.551692	1.000000
N	cassette	ZNF638	chr2	+	chr2:71654545-71658456;chr2:71645770-71658456	chr2:71645770-71655676,chr2:71654545-71655676;chr2:71655782-71658456		chr2:71655677-71655781			88.68	100.00	100.00	100.00	94.52	100.00	100.00	98.61	96.43	92.31	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.49	93.88	92.75	95.83	98.33	100.00	95.74	98.63	95.77	92.59	100.00	92.68	91.11	94.19	89.86	91.67	100.00	90.70	98.25	96.25	-2.00	0.473273	0.770157
K	alternative_acceptor	HLA-DQA1	chr6	+	chr6:32610562-32611069	chr6:32610562-32610728		chr6:32610729-32611069	chr6:32611069-32611070		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	50.00	100.00	100.00	81.48	88.10	82.05	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	100.00	100.00	0.00	0.391002	0.709013
N	alternative_donor		chr19	-	chr19:18502936-18506885;chr19:18502936-18508262	chr19:18502936-18506994		chr19:18506886-18506994;chr19:18506995-18508262	chr19:18506994-18506995;chr19:18508262-18508263		98.71	97.06	99.00	100.00	96.61	NA	98.88	98.94	100.00	100.00	100.00	NA	99.23	99.26	97.30	98.65	97.44	100.00	90.00	97.13	100.00	100.00	97.42	NA	100.00	100.00	98.70	100.00	100.00	100.00	94.20	96.40	100.00	100.00	99.22	100.00	99.06	98.82	-0.23	0.782346	0.920010
N	jcn_only_AA	SSH3	chr11	+	chr11:64030034-64030147	chr11:64030034-64030118		chr11:64030119-64030147	chr11:64030147-64030148		100.00	100.00	98.11	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.83	100.00	100.00	NA	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AD	AP2A2	chr11	+	chr11:926089-959436;chr11:932778-959436;chr11:946964-959436	chr11:933598-959436		chr11:926089-932777;chr11:932778-933597;chr11:933598-946963	chr11:926088-926089;chr11:932777-932778;chr11:933597-933598		0.00	0.00	0.00	NA	NA	NA	1.50	0.00	0.00	0.00	3.17	0.00	1.23	0.00	0.00	4.35	2.00	0.00	NA	0.00	NA	NA	0.00	8.33	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.61	0.00	-0.61	0.184788	0.657607
N	alternative_acceptor	PHKB	chr16	+	chr16:2820467-2820610;chr16:2820467-2820607	chr16:2820467-2820604		chr16:2820605-2820607;chr16:2820608-2820610	chr16:2820607-2820608;chr16:2820610-2820611		93.85	98.25	98.51	95.74	98.65	97.62	100.00	94.12	93.55	96.00	93.75	100.00	96.88	100.00	97.44	96.30	97.56	90.00	92.00	96.97	100.00	97.22	96.39	97.06	94.12	94.44	91.55	100.00	94.64	96.00	98.04	93.42	97.06	100.00	97.92	95.65	96.97	95.70	-1.27	0.926139	0.978996
N	alternative_acceptor	PILRA	chr7	+	chr7:99997236-99999620;chr7:99997236-99997445;chr7:99997236-100014955;chr7:99997236-99997524;chr7:99997236-100001371;chr7:99997236-100006076;chr7:99997236-100001374	chr7:99997236-99997407		chr7:99997408-99997445;chr7:99997446-99997524;chr7:99997525-99999620;chr7:99999621-100001371;chr7:100001372-100001374;chr7:100001375-100006076;chr7:100006077-100014955	chr7:99997445-99997446;chr7:99997524-99997525;chr7:99999620-99999621;chr7:100001371-100001372;chr7:100001374-100001375;chr7:100006076-100006077;chr7:100014955-100014956		100.00	96.77	100.00	100.00	100.00	94.74	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	87.50	100.00	NA	NA	96.43	96.00	94.59	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	96.55	93.33	96.55	96.30	100.00	100.00	100.00	96.60	100.00	3.40	0.505529	0.796066
K	intron_retention	HGS	chr17	+	chr17:79660996-79661844				chr17:79660995-79660996;chr17:79661844-79661845		5.45	0.00	7.61	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.32	0.00	1.04	0.75	2.04	0.00	NA	5.66	13.33	2.17	2.90	3.77	0.00	0.00	8.82	7.50	4.65	0.00	2.33	5.38	0.00	3.75	3.61	8.42	0.00	1.17	1.17	0.517034	1.000000
K	alternative_acceptor	ARRDC1	chr9	+	chr9:140507459-140507864;chr9:140507459-140507911	chr9:140507459-140507874		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		4.35	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	8.33	NA	NA	0.00	NA	15.38	0.00	5.88	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.882392	0.960122
K	intron_retention		chr22	-	chr22:51065481-51065593				chr22:51065480-51065481;chr22:51065593-51065594		26.67	26.47	34.78	15.79	11.54	5.88	1.79	3.06	1.92	1.37	0.87	0.00	2.53	2.33	10.00	2.17	1.82	0.00	23.53	30.77	15.79	14.29	13.33	14.89	8.33	17.92	24.53	17.46	13.33	13.24	24.19	27.14	15.38	12.20	19.64	16.98	11.86	21.05	9.20	0.823242	1.000000
K	alternative_first_exon	RPS27L	chr15	-	chr15:63448721-63448866,chr15:63448721-63449312;chr15:63448721-63450114;chr15:63448721-63449598	chr15:63448721-63448985	chr15:63450115-63450220;chr15:63449599-63450001	chr15:63448986-63449480			5.19	2.31	7.44	2.50	1.87	3.57	2.35	4.76	2.02	2.74	2.73	4.41	1.92	5.45	3.33	3.37	2.00	1.56	1.87	4.82	1.52	3.17	3.10	4.48	2.56	8.45	3.00	5.66	1.72	4.23	7.22	6.49	0.87	8.14	5.62	7.87	2.12	5.32	3.21	0.000670	0.015511
N	jcn_only_AD	ATF7	chr12	-	chr12:7531895-7548883	chr12:7531895-7548690		chr12:7548691-7548883	chr12:7548883-7548884		92.86	100.00	93.98	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	98.73	100.00	NA	100.00	100.00	100.00	100.00	94.44	NA	100.00	100.00	97.14	100.00	94.12	93.62	100.00	100.00	100.00	100.00	88.24	NA	100.00	97.89	95.97	100.00	94.44	-5.56	0.087305	0.632469
K	intron_retention		chr16	+	chr16:722385-722488				chr16:722384-722385;chr16:722488-722489		11.11	12.73	14.00	16.67	15.00	7.69	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	2.86	6.90	4.55	NA	10.34	3.57	11.76	13.79	10.34	13.64	8.33	12.50	15.79	12.50	17.14	20.83	16.22	12.50	12.50	14.71	7.32	16.67	9.34	7.34	-2.00	0.928383	1.000000
K	intron_retention	PRRC2A	chr6	+	chr6:31604723-31604818				chr6:31604722-31604723;chr6:31604818-31604819		2.63	0.00	2.59	1.27	0.87	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	1.27	0.00	0.00	1.85	4.65	2.48	0.00	3.57	0.00	3.95	1.52	2.36	1.82	1.61	0.00	3.95	8.62	2.61	2.78	2.86	2.97	0.93	2.08	1.15	0.949779	1.000000
N	alternative_donor	N4BP2L1	chr13	-	chr13:32976039-32977044;chr13:32976039-32977286	chr13:32976039-32976843		chr13:32976844-32977044;chr13:32977045-32977286	chr13:32977044-32977045;chr13:32977286-32977287		38.89	40.00	54.46	26.67	40.00	21.35	55.17	56.82	35.29	50.74	NA	26.48	57.14	57.58	56.92	56.00	46.15	49.82	NA	35.71	41.18	39.47	43.75	32.60	25.00	32.91	41.67	39.13	NA	34.00	47.62	52.85	33.33	50.00	50.00	31.60	40.00	43.25	3.25	0.723199	0.885224
N	alternative_acceptor	ARHGEF10L	chr1	+	chr1:17965185-17966696;chr1:17965185-17965732	chr1:17965185-17966326		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		0.00	0.00	0.00	5.00	0.00	15.38	0.00	0.50	1.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.98	NA	2.63	0.00	2.04	1.54	0.80	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.25	0.25	0.133225	0.629354
K	jcn_only_AA	ANKRD13D,RIC8A	chr11	+	chr11:212512-212614	chr11:212512-212596		chr11:212597-212614	chr11:212614-212615		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.78	0.00	0.00	3.51	4.44	0.00	0.00	0.00	0.00	6.25	6.00	0.00	0.00	1.85	0.00	0.00	5.00	1.79	0.00	0.00	0.00	0.00	5.26	0.00	0.00	1.89	0.00	0.00	2.22	2.22	0.566497	0.794809
N	cassette	CD44	chr11	+	chr11:35211613-35232792;chr11:35226188-35232792;chr11:35211520-35236398;chr11:35219794-35236398;chr11:35219794-35232792;chr11:35211613-35231511;chr11:35223335-35232792;chr11:35227791-35236398;chr11:35211613-35236398;chr11:35223335-35236398;chr11:35226188-35236398;chr11:35211520-35232792	chr11:35227791-35229651,chr11:35226188-35229651,chr11:35223335-35229651,chr11:35219794-35229651,chr11:35211613-35229651,chr11:35211520-35229651;chr11:35229754-35236398,chr11:35229754-35232792,chr11:35229754-35231511		chr11:35229652-35229753			2.31	0.00	4.35	14.58	4.55	12.00	0.95	1.56	3.06	17.04	2.97	16.30	2.00	3.88	5.94	25.69	6.68	26.73	0.74	1.81	2.14	11.81	4.75	17.78	0.00	2.24	5.56	17.78	6.54	21.06	1.86	4.72	0.00	13.01	6.89	18.50	0.37	2.05	1.68	0.005491	0.255099
K	intron_retention	OGFR	chr20	+	chr20:61443908-61444849				chr20:61443907-61443908;chr20:61444849-61444850		94.30	100.00	96.30	96.30	93.18	90.57	100.00	95.45	98.98	95.18	100.00	100.00	96.00	96.26	100.00	95.65	97.73	93.26	87.50	96.15	92.50	89.80	92.31	93.18	100.00	95.29	100.00	95.00	100.00	92.27	93.68	89.34	97.47	93.55	100.00	90.60	98.73	95.37	-3.36	0.775242	1.000000
K	intron_retention	GSDMD	chr8	+	chr8:144643999-144644128				chr8:144643998-144643999;chr8:144644128-144644129		4.04	1.79	5.74	2.27	5.17	4.68	0.00	0.00	0.00	NA	0.00	3.57	0.00	0.00	1.65	5.00	0.00	0.00	6.25	3.70	2.94	10.00	0.00	5.00	5.33	3.36	1.72	7.32	6.67	4.55	5.71	4.32	1.52	4.76	0.00	5.88	1.66	3.53	1.88	0.962546	1.000000
N	alternative_acceptor	CLCN7	chr16	-	chr16:1497680-1498355;chr16:1497799-1498355	chr16:1497716-1498355		chr16:1497680-1497715;chr16:1497716-1497798	chr16:1497679-1497680;chr16:1497715-1497716		92.31	98.08	100.00	100.00	97.73	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	94.74	92.59	100.00	92.59	98.41	96.00	100.00	95.00	98.11	100.00	98.08	100.00	96.97	98.15	100.00	97.96	98.08	98.08	100.00	95.98	-4.02	0.144527	0.648066
N	jcn_only_AD	PPP6R1	chr19	-	chr19:55758478-55767042;chr19:55758478-55763461	chr19:55758478-55769802		chr19:55763462-55767042;chr19:55767043-55769802	chr19:55767042-55767043;chr19:55769802-55769803		76.00	100.00	94.44	NA	NA	NA	88.24	84.21	88.00	83.33	78.95	100.00	79.55	79.17	90.00	100.00	83.33	NA	NA	75.00	NA	NA	100.00	NA	100.00	93.10	100.00	NA	NA	NA	NA	100.00	NA	100.00	100.00	100.00	94.12	79.17	-14.95	0.136048	0.657607
K	jcn_only_AD	ORMDL1,SNRNP200	chr2	-	chr2:190636629-190640290	chr2:190636629-190638612		chr2:190638613-190640290	chr2:190640290-190640291		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	TNK2	chr3	-	chr3:195593888-195594231	chr3:195593888-195594039;chr3:195594130-195594231		chr3:195594040-195594129			90.57	84.44	81.25	NA	78.95	NA	100.00	93.33	85.00	NA	90.00	NA	91.67	92.68	95.45	NA	100.00	NA	89.29	83.72	83.33	NA	62.96	NA	65.62	95.00	81.82	NA	82.35	NA	86.49	85.00	83.33	NA	NA	89.47	86.87	91.62	4.76	0.395954	0.711787
K	alternative_first_exon	GPR108	chr19	-	chr19:6736723-6737467	chr19:6736723-6737000	chr19:6737468-6737614	chr19:6737001-6737271			6.45	0.00	2.44	NA	NA	NA	0.00	0.00	0.00	0.00	10.00	0.00	4.00	4.55	10.00	6.25	NA	NA	NA	0.00	NA	9.09	6.25	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	14.29	NA	16.67	14.29	4.17	0.00	0.00	0.00	0.605715	0.715602
N	alternative_first_exon	MKNK1	chr1	-	chr1:47059953-47060539,chr1:47059953-47062822,chr1:47059953-47069836,chr1:47059953-47075070;chr1:47059953-47069898,chr1:47059953-47069856;chr1:47059953-47078575	chr1:47059953-47082382	chr1:47069899-47069927;chr1:47078576-47082137	chr1:47082383-47082563			5.88	0.00	4.35	NA	0.00	NA	1.79	0.00	0.00	11.11	0.00	8.33	1.11	0.00	0.00	3.57	1.47	0.00	18.18	0.00	NA	NA	3.33	NA	NA	4.00	0.00	0.00	0.00	NA	NA	7.69	10.00	16.67	5.56	20.00	1.79	0.00	-1.79	0.302793	0.521457
K	intron_retention		chr8	+	chr8:22424227-22424334				chr8:22424226-22424227;chr8:22424334-22424335		18.75	25.81	NA	NA	12.50	NA	1.32	3.70	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	18.18	NA	NA	15.38	21.05	11.76	40.74	17.65	NA	0.00	6.12	20.00	NA	16.67	NA	14.29	26.92	16.67	18.18	10.67	-7.51	0.825620	1.000000
N	jcn_only_AD	MYL6B	chr12	+	chr12:56549377-56551251;chr12:56549386-56551251;chr12:56549278-56551251	chr12:56549814-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		7.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.79	0.00	0.00	0.00	7.21	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.984947	0.993847
N	cassette	EML3	chr11	-	chr11:62373246-62373534	chr11:62373246-62373326;chr11:62373453-62373534		chr11:62373327-62373452			90.48	91.18	97.14	NA	91.30	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	86.67	75.86	81.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	88.89	90.00	92.59	100.00	100.00	0.00	0.942131	0.985246
N	alternative_donor	STK11	chr19	+	chr19:1221340-1221947	chr19:1221846-1221947		chr19:1221340-1221845	chr19:1221339-1221340		5.26	1.94	4.88	0.00	2.33	0.00	0.00	0.00	3.33	7.14	0.00	NA	0.00	0.00	2.50	3.57	3.33	NA	2.04	0.00	2.50	7.69	3.23	NA	1.59	7.14	5.88	5.00	3.45	7.14	0.00	3.92	0.00	0.00	4.76	4.55	0.80	0.00	-0.80	0.445453	0.705733
N	alternative_donor		chr7	-	chr7:151254319-151255595;chr7:151254319-151254391	chr7:151254319-151257609		chr7:151254392-151255595;chr7:151255596-151257609	chr7:151255595-151255596;chr7:151257609-151257610		91.95	97.44	89.09	98.11	97.96	98.65	95.65	100.00	100.00	98.23	97.85	100.00	93.94	95.45	96.23	96.88	96.23	100.00	100.00	94.87	100.00	94.68	93.33	93.33	100.00	96.25	94.12	97.18	100.00	100.00	97.73	95.83	100.00	95.91	94.83	96.12	98.72	95.85	-2.87	0.270588	0.645499
K	intron_retention	GLS	chr2	+	chr2:191819545-191827555				chr2:191819544-191819545;chr2:191827555-191827556		27.59	0.00	5.26	0.00	0.00	2.17	0.00	7.69	0.00	0.00	0.00	0.00	0.00	6.67	3.12	0.00	NA	0.00	0.00	31.58	0.00	4.65	2.38	11.54	0.00	25.00	3.23	12.50	0.00	1.96	6.06	9.80	0.00	15.62	0.00	15.33	0.00	16.34	16.34	0.368862	1.000000
K	jcn_only_AA	POLA2	chr11	+	chr11:65063071-65063404	chr11:65063071-65063334		chr11:65063335-65063404	chr11:65063404-65063405		100.00	100.00	100.00	NA	91.67	94.74	100.00	81.82	NA	NA	92.31	100.00	100.00	94.12	94.44	91.67	100.00	100.00	NA	88.89	100.00	NA	NA	93.75	NA	87.50	NA	NA	NA	92.86	NA	92.86	92.31	NA	NA	94.12	100.00	88.89	-11.11	0.078095	0.663989
K	cassette	DDB2	chr11	+	chr11:47256964-47259387	chr11:47256964-47259169;chr11:47259264-47259387		chr11:47259170-47259263			0.00	5.56	6.90	0.00	3.12	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	5.26	0.00	4.00	0.00	0.00	0.00	NA	0.00	3.85	0.00	5.26	4.55	5.26	1.92	0.00	0.00	0.00	6.45	0.00	0.00	0.00	0.641876	0.868138
N	cassette	BCAP29	chr7	+	chr7:107253878-107262074;chr7:107253878-107256705;chr7:107253878-107258772	chr7:107253878-107254098;chr7:107254178-107262074,chr7:107254178-107256705,chr7:107254178-107258772		chr7:107254099-107254177			10.00	15.79	11.48	18.52	15.00	14.81	8.70	8.33	9.52	8.70	10.98	10.20	3.70	11.29	7.58	7.14	8.47	8.11	15.79	19.05	9.62	26.92	23.68	11.90	8.89	11.36	17.39	13.33	12.50	11.11	16.13	20.63	9.30	16.33	17.86	16.07	9.10	11.32	2.23	0.378373	0.709410
K	jcn_only_AA	RIC8A	chr11	+	chr11:213419-214287;chr11:213419-214205	chr11:213419-214229		chr11:214206-214229;chr11:214230-214287	chr11:214229-214230;chr11:214287-214288		97.73	97.14	95.45	93.10	97.62	100.00	96.05	94.55	92.31	87.80	98.46	100.00	95.89	94.00	98.46	93.55	100.00	100.00	97.78	93.83	91.94	91.07	95.24	100.00	100.00	96.05	90.91	94.00	96.63	93.75	95.00	91.01	90.00	93.33	95.95	91.67	96.59	94.78	-1.82	0.546338	0.781787
N	alternative_donor	M6PR,TNFRSF1A	chr12	-	chr12:6442314-6442532	chr12:6442314-6442526		chr12:6442527-6442532	chr12:6442532-6442533		1.93	6.58	2.13	0.00	2.04	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.00	0.51	0.00	0.00	0.00	2.09	2.86	0.00	1.09	2.38	5.41	1.89	1.31	2.11	0.68	1.35	5.56	5.14	5.88	1.96	1.91	2.15	2.71	1.91	-0.80	0.534886	0.777227
K	intron_retention	MED24	chr17	-	chr17:38175899-38176037				chr17:38175898-38175899;chr17:38176037-38176038		3.23	3.70	3.12	0.00	2.94	NA	0.00	0.00	0.00	NA	0.00	NA	4.00	4.76	0.00	11.11	7.14	9.09	6.52	0.00	4.76	0.00	8.33	NA	4.17	0.00	4.55	0.00	3.12	0.00	0.00	2.38	2.78	0.00	0.00	4.17	3.85	0.00	-3.85	0.762996	1.000000
K	alternative_acceptor	SEPW1	chr19	+	chr19:48284646-48287662	chr19:48284646-48287546		chr19:48287547-48287662	chr19:48287662-48287663		78.99	78.97	79.83	80.25	74.52	70.54	80.36	76.34	83.02	86.96	91.07	80.00	84.21	82.82	81.33	88.00	85.25	85.71	74.84	80.49	72.31	86.49	77.08	85.19	72.96	80.28	77.01	81.08	80.82	83.02	77.38	83.06	77.40	100.00	81.44	77.46	78.19	79.63	1.45	0.525241	0.808638
N	alternative_acceptor	CCS,TSPAN32	chr11	+	chr11:66368021-66372809;chr11:66368021-66372628	chr11:66368021-66372624		chr11:66372625-66372628;chr11:66372629-66372809	chr11:66372628-66372629;chr11:66372809-66372810		3.51	3.92	6.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	3.53	0.00	0.00	NA	0.77	3.23	4.23	6.67	0.00	0.00	0.00	5.08	2.61	0.00	0.00	6.90	0.39	0.00	-0.39	0.905316	0.968504
K	intron_retention	DENND4B	chr1	-	chr1:153903541-153904679				chr1:153903540-153903541;chr1:153904679-153904680		6.17	11.32	9.20	NA	8.11	NA	0.00	2.04	0.00	0.00	3.53	0.00	1.52	0.00	9.76	0.00	1.00	0.00	0.00	9.09	5.56	15.79	9.09	12.12	30.00	9.62	2.99	3.12	8.33	4.76	9.52	11.11	6.25	14.00	10.53	14.81	3.88	7.63	3.75	0.789140	1.000000
N	alternative_donor	COLGALT1	chr19	+	chr19:17691050-17691507;chr19:17690419-17691507	chr19:17691429-17691507		chr19:17690419-17691049;chr19:17691050-17691428	chr19:17690418-17690419;chr19:17691049-17691050		3.66	6.25	8.45	NA	3.85	NA	1.09	4.26	2.82	4.20	4.33	1.61	2.42	5.48	5.26	4.80	5.58	2.56	5.88	4.29	7.14	14.29	6.62	12.00	5.41	2.86	6.29	8.70	8.42	0.00	7.69	9.80	4.55	6.25	7.44	3.12	4.98	4.28	-0.71	0.695916	0.870486
N	jcn_only_AA		chr11	+	chr11:47435238-47435835;chr11:47435238-47435853	chr11:47435238-47435975		chr11:47435836-47435853;chr11:47435854-47435975	chr11:47435853-47435854;chr11:47435975-47435976		100.00	100.00	100.00	100.00	92.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	98.55	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AD	CYTH4	chr22	+	chr22:37679083-37688661;chr22:37686501-37688661;chr22:37678630-37688661;chr22:37685931-37688661;chr22:37680847-37688661;chr22:37682292-37688661;chr22:37683679-37688661	chr22:37680152-37688661		chr22:37678630-37679082;chr22:37679083-37680151;chr22:37680152-37680846;chr22:37680847-37682291;chr22:37682292-37683678;chr22:37683679-37685930;chr22:37685931-37686500	chr22:37678629-37678630;chr22:37679082-37679083;chr22:37680151-37680152;chr22:37680846-37680847;chr22:37682291-37682292;chr22:37683678-37683679;chr22:37685930-37685931		0.00	9.38	0.00	NA	0.00	NA	0.57	0.68	3.28	1.04	1.27	2.02	0.98	1.12	1.28	0.00	0.00	0.00	NA	0.57	0.00	0.00	2.53	0.00	0.00	1.30	1.46	1.89	0.00	0.00	0.00	0.69	0.00	0.00	0.00	0.00	0.57	0.62	0.06	0.434860	0.696909
N	jcn_only_AA		chr2	+	chr2:46846821-46851923	chr2:46846821-46850902		chr2:46850903-46851923	chr2:46851923-46851924		90.00	100.00	95.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.196435	0.663989
N	jcn_only_AA	ARHGEF10L	chr1	+	chr1:17965185-17966696;chr1:17965185-17965732	chr1:17965185-17966326		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		0.00	0.00	0.00	5.26	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	3.07	0.00	0.00	0.00	2.00	NA	3.19	1.12	2.04	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.50	0.471646	0.730756
N	cassette	CHMP3,RNF103-CHMP3	chr2	-	chr2:86737603-86790426	chr2:86737603-86756340;chr2:86756521-86790426		chr2:86756341-86756520			100.00	100.00	100.00	100.00	93.75	100.00	97.53	100.00	100.00	100.00	97.98	100.00	94.85	96.72	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	100.00	100.00	96.92	96.19	100.00	3.81	0.093353	0.658231
N	alternative_acceptor	HPS1	chr10	-	chr10:100183404-100183509	chr10:100183426-100183509		chr10:100183404-100183425	chr10:100183403-100183404		100.00	90.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	97.62	100.00	100.00	0.00	0.900526	0.965081
K	cassette	LGALS9	chr17	+	chr17:25969375-25972886;chr17:25969375-25972339	chr17:25969375-25970550;chr17:25970647-25972886,chr17:25970647-25972339		chr17:25970551-25970646			87.67	88.10	84.62	63.64	55.81	83.33	95.16	95.88	97.74	89.29	89.37	95.19	65.89	89.32	76.76	63.03	62.21	75.92	57.14	80.37	87.93	61.11	59.09	77.78	45.83	74.84	66.67	59.21	44.05	67.23	78.67	74.07	63.64	70.45	53.45	71.17	64.77	84.02	19.26	0.112737	0.709176
N	alternative_donor	MRPL40	chr22	+	chr22:19420329-19420787;chr22:19420131-19420787	chr22:19420383-19420787		chr22:19420131-19420328;chr22:19420329-19420382	chr22:19420130-19420131;chr22:19420328-19420329		0.00	0.00	0.00	NA	3.70	0.00	7.50	3.75	5.33	5.00	7.69	0.00	7.50	4.69	3.23	6.67	12.50	0.00	0.00	0.00	2.17	0.00	4.00	0.00	0.00	4.65	0.00	0.00	4.00	0.00	0.00	0.00	0.00	5.88	0.00	4.55	0.00	1.88	1.88	0.868382	0.967687
N	alternative_acceptor	RNF40	chr16	+	chr16:30783512-30785634;chr16:30783512-30785135	chr16:30783512-30785258		chr16:30785136-30785258;chr16:30785259-30785634	chr16:30785258-30785259;chr16:30785634-30785635		96.08	97.87	98.51	100.00	91.89	NA	97.67	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	98.04	100.00	100.00	97.56	97.06	100.00	94.34	100.00	95.24	100.00	98.39	100.00	100.00	100.00	98.04	97.47	100.00	97.56	98.18	94.74	97.90	99.02	1.12	0.626162	0.855896
K	jcn_only_AA	HNRNPA1	chr12	+	chr12:54678102-54680445	chr12:54678102-54678332		chr12:54678333-54680445	chr12:54680445-54680446		93.28	90.57	90.78	88.71	91.07	81.52	96.92	95.38	96.07	98.75	99.29	99.05	97.35	95.65	95.53	97.53	99.49	99.42	82.65	85.33	89.00	89.00	95.26	91.57	86.91	90.00	90.76	96.49	96.21	92.54	72.87	81.08	78.83	93.56	94.81	93.32	88.74	91.64	2.90	0.980109	0.993254
N	jcn_only_AD	GYPC	chr2	+	chr2:127440451-127447830;chr2:127433326-127447830	chr2:127413889-127447830		chr2:127413889-127433325;chr2:127433326-127440450	chr2:127413888-127413889;chr2:127433325-127433326		100.00	100.00	96.36	95.00	100.00	93.33	98.08	100.00	96.41	97.30	98.88	96.10	98.27	97.06	100.00	99.19	98.97	97.56	100.00	100.00	95.08	90.62	97.81	97.22	100.00	97.37	99.02	97.44	100.00	94.52	90.20	93.33	96.23	92.42	94.74	92.72	99.13	98.69	-0.45	0.455899	0.710370
N	alternative_acceptor	COLGALT1	chr19	+	chr19:17690419-17691344;chr19:17690419-17690826;chr19:17690419-17691507;chr19:17690419-17691230	chr19:17690419-17690895		chr19:17690827-17690895;chr19:17690896-17691230;chr19:17691231-17691344;chr19:17691345-17691507	chr19:17690895-17690896;chr19:17691230-17691231;chr19:17691344-17691345;chr19:17691507-17691508		1.22	2.08	6.76	NA	3.85	NA	0.71	0.00	1.41	1.69	1.57	0.00	1.03	2.74	2.56	2.40	2.00	0.00	0.00	2.86	6.67	4.76	3.55	8.00	2.86	5.41	3.09	4.35	4.17	0.00	0.00	3.85	0.00	2.47	3.20	3.08	0.87	1.98	1.11	0.368210	0.709013
N	alternative_acceptor		chr5	+	chr5:96107400-96108971;chr5:96107400-96108494	chr5:96107400-96108343		chr5:96108344-96108494;chr5:96108495-96108971	chr5:96108494-96108495;chr5:96108971-96108972		86.08	NA	78.33	90.00	87.72	83.94	73.33	86.76	NA	NA	NA	80.00	83.33	88.71	NA	85.19	NA	NA	72.73	66.67	86.79	NA	82.98	80.95	NA	81.25	NA	81.08	80.00	86.42	90.38	85.71	92.98	NA	86.27	92.78	78.33	86.42	8.09	0.664808	0.878422
K	intron_retention	HMGN2	chr1	+	chr1:26800019-26800193				chr1:26800018-26800019;chr1:26800193-26800194		5.59	1.77	6.37	1.79	1.45	0.00	0.32	1.02	1.19	0.00	0.74	0.00	0.82	1.01	2.05	0.26	0.72	0.00	1.29	4.10	2.08	2.75	2.89	2.34	2.46	6.95	6.55	1.55	2.25	0.00	3.06	5.61	1.19	2.87	5.51	1.26	1.24	3.58	2.34	0.138849	1.000000
K	intron_retention		chr17	-	chr17:66425078-66426136				chr17:66425077-66425078;chr17:66426136-66426137		0.00	0.00	1.22	40.00	21.43	NA	3.45	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	25.00	0.00	6.06	14.29	17.39	NA	NA	0.99	1.00	11.76	5.26	NA	2.86	2.73	18.18	8.51	12.12	5.41	3.45	0.00	-3.45	0.599774	1.000000
K	cassette	GOLGB1	chr3	-	chr3:121387006-121388058	chr3:121387006-121387160;chr3:121387356-121388058		chr3:121387161-121387355			6.25	0.00	11.11	0.00	0.00	NA	0.00	10.00	7.14	NA	10.00	NA	0.00	9.09	16.67	NA	0.00	NA	NA	5.26	5.00	NA	6.25	10.00	10.00	16.00	0.00	NA	0.00	8.33	10.53	6.45	0.00	9.09	9.52	6.45	0.00	9.54	9.54	0.017943	0.373030
N	alternative_acceptor	APOL2	chr22	-	chr22:36624648-36627385;chr22:36621286-36627385	chr22:36624327-36627385		chr22:36621286-36624326;chr22:36624327-36624647	chr22:36621285-36621286;chr22:36624326-36624327		98.58	97.06	97.50	96.49	90.00	98.13	100.00	100.00	100.00	100.00	100.00	99.50	100.00	100.00	99.38	100.00	100.00	99.66	92.31	98.50	98.46	97.56	95.45	98.61	NA	99.01	97.06	99.29	96.43	99.64	98.12	96.69	92.00	97.98	100.00	98.89	97.06	98.80	1.73	0.194474	0.660713
K	alternative_last_exon	PML,SNX1	chr15	+	chr15:64429132-64430117,chr15:64429132-64435453;chr15:64429132-64430240	chr15:64429132-64429766	chr15:64430241-64432074	chr15:64429767-64430205			98.64	99.68	95.54	100.00	99.63	100.00	94.74	99.24	97.96	98.00	96.43	96.15	95.10	99.21	97.80	97.78	95.89	98.36	99.52	99.06	99.50	98.46	98.28	97.06	99.48	99.15	98.04	100.00	99.11	100.00	100.00	98.85	99.61	97.67	97.28	96.83	99.50	99.18	-0.32	0.281945	0.491468
K	cassette	SUMF1	chr3	-	chr3:4403939-4452548	chr3:4403939-4418013;chr3:4418074-4452548		chr3:4418014-4418073			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	95.00	100.00	100.00	97.78	NA	100.00	96.67	94.59	NA	100.00	100.00	100.00	100.00	96.30	94.12	NA	NA	100.00	100.00	100.00	100.00	100.00	88.00	100.00	100.00	96.00	95.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_acceptor	FPR3	chr19	+	chr19:52298585-52356774;chr19:52298585-52347564;chr19:52298585-52342893;chr19:52298585-52326991;chr19:52298585-52326936	chr19:52298585-52304725		chr19:52304726-52326936;chr19:52326937-52326991;chr19:52326992-52342893;chr19:52342894-52347564;chr19:52347565-52356774	chr19:52326936-52326937;chr19:52326991-52326992;chr19:52342893-52342894;chr19:52347564-52347565;chr19:52356774-52356775		2.27	4.76	0.00	NA	3.57	NA	0.00	1.65	3.85	5.56	0.84	0.00	1.12	1.65	4.76	2.78	1.99	5.88	6.67	0.00	NA	0.00	1.02	NA	NA	1.10	0.00	0.00	1.06	NA	0.00	0.00	9.09	3.23	1.41	0.00	4.76	1.38	-3.38	0.130943	0.626004
K	cassette	RPS24	chr10	+	chr10:79797063-79800372	chr10:79797063-79799958;chr10:79799984-79800372		chr10:79799959-79799983			48.11	82.13	60.09	73.85	78.76	79.78	47.47	25.00	28.03	46.26	43.37	47.83	59.40	27.78	35.56	52.16	61.38	59.55	77.53	46.02	34.48	69.11	76.32	71.04	66.95	36.62	38.29	53.02	61.07	60.77	59.32	64.42	73.61	69.44	72.31	72.49	70.28	41.32	-28.96	0.004393	0.236885
N	jcn_only_AA	CORO7,CORO7-PAM16	chr16	-	chr16:4438633-4445289;chr16:4412133-4445289;chr16:4439278-4445289	chr16:4440448-4445289					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	TMEM259	chr19	-	chr19:1011649-1011739;chr19:1011612-1011739	chr19:1011663-1011739		chr19:1011612-1011648;chr19:1011649-1011662	chr19:1011611-1011612;chr19:1011648-1011649		63.41	86.08	72.41	68.75	72.34	NA	82.83	76.12	75.00	70.00	71.68	71.21	76.72	76.39	74.34	82.61	73.02	74.58	72.73	66.15	68.29	71.43	76.09	75.56	73.68	67.92	73.60	77.46	68.60	71.88	44.44	68.00	65.52	75.41	73.81	73.53	75.20	67.03	-8.17	0.097883	0.663989
N	alternative_acceptor	TNFSF13B	chr13	+	chr13:108922583-108922687	chr13:108922583-108922672		chr13:108922673-108922687	chr13:108922687-108922688		4.79	0.00	0.00	NA	0.00	0.00	3.23	4.08	2.96	2.04	2.47	2.51	4.71	4.30	2.56	2.70	1.75	2.09	NA	3.29	0.00	NA	4.76	4.11	0.00	6.44	4.88	0.00	0.00	2.98	5.04	4.94	NA	5.88	4.00	3.52	1.61	4.54	2.93	0.105013	0.598353
N	cassette	TBC1D9B	chr5	-	chr5:179306198-179315102	chr5:179306198-179306627;chr5:179306790-179315102		chr5:179306628-179306789			100.00	87.10	93.55	NA	NA	NA	98.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	97.35	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	94.00	100.00	99.23	100.00	0.77	0.331090	0.709176
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49949952-49950280;chr19:49950002-49950280;chr19:49950052-49950280	chr19:49949853-49950280		chr19:49949853-49949951;chr19:49949952-49950001;chr19:49950002-49950051	chr19:49949852-49949853;chr19:49949951-49949952;chr19:49950001-49950002		0.00	1.77	4.76	0.00	4.08	4.41	0.00	0.00	4.35	0.00	0.00	7.69	7.41	0.00	8.00	6.67	5.88	NA	8.16	12.50	3.95	10.00	0.00	NA	0.00	8.70	2.44	0.00	8.70	5.56	4.88	4.08	5.71	0.00	0.00	0.00	3.74	2.44	-1.30	0.853272	0.947480
N	intron_retention		chr2	-	chr2:235404258-235404371				chr2:235404257-235404258;chr2:235404371-235404372		100.00	97.06	94.74	96.49	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	97.25	100.00	NA	100.00	99.12	100.00	94.55	100.00	100.00	98.53	100.00	100.00	100.00	100.00	100.00	97.87	100.00	96.43	100.00	94.59	97.50	100.00	100.00	98.11	97.38	100.00	2.62	0.083625	1.000000
N	jcn_only_AD	COG4	chr16	-	chr16:70515391-70515666	chr16:70515391-70515661		chr16:70515662-70515666	chr16:70515666-70515667		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	4.35	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.397139	0.662555
N	alternative_donor		chr9	-	chr9:100975501-100982432;chr9:100975501-100976364	chr9:100975501-100983114		chr9:100976365-100982432;chr9:100982433-100983114	chr9:100982432-100982433;chr9:100983114-100983115		95.65	90.91	95.56	NA	100.00	NA	98.84	97.56	100.00	97.50	98.99	NA	97.62	93.10	93.33	97.87	97.83	NA	NA	95.45	100.00	95.00	96.67	90.00	93.75	95.92	97.37	96.00	97.80	NA	98.59	98.00	100.00	93.48	94.55	93.75	97.62	95.78	-1.84	0.926761	0.984606
K	cassette	ALDH3A2	chr17	+	chr17:19575270-19578870;chr17:19575270-19578808	chr17:19575270-19576512;chr17:19576589-19578808,chr17:19576589-19578870		chr17:19576513-19576588			0.00	0.00	6.25	3.23	3.53	0.00	1.82	0.00	4.35	2.08	3.08	4.35	3.45	NA	0.00	5.00	3.17	0.00	5.56	0.00	3.39	0.00	2.06	6.67	0.00	0.00	2.50	0.00	2.25	0.00	5.26	4.65	2.33	2.78	2.15	0.00	2.08	0.00	-2.08	0.426611	0.734764
K	cassette	NR1H3	chr11	+	chr11:47283001-47283469	chr11:47283001-47283097;chr11:47283278-47283469		chr11:47283098-47283277			95.54	87.65	94.56	85.71	90.98	85.71	97.26	99.09	99.42	94.52	95.83	95.29	100.00	97.59	96.99	93.43	96.97	100.00	90.91	94.84	95.22	91.67	91.24	92.31	100.00	97.77	95.56	90.38	93.62	97.27	94.72	92.06	94.87	93.23	90.91	92.80	96.06	96.56	0.50	0.521683	0.797732
N	jcn_only_AA	MAN2B1	chr19	-	chr19:12769322-12772073;chr19:12769328-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769325-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		99.02	100.00	96.99	90.62	96.72	100.00	97.06	97.14	97.89	96.79	96.53	96.77	97.42	95.77	97.58	95.00	97.16	97.68	89.47	92.72	87.10	91.15	90.03	91.07	90.45	92.70	94.46	92.55	92.27	91.27	90.48	91.27	89.13	93.73	92.50	92.24	93.75	94.25	0.49	0.767286	0.896441
N	alternative_donor	ARRDC1	chr9	+	chr9:140508117-140508483	chr9:140508222-140508483		chr9:140508117-140508221	chr9:140508116-140508117		100.00	100.00	100.00	NA	100.00	NA	96.15	95.65	95.45	100.00	95.65	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.00	NA	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	0.00	0.933132	0.984606
K	intron_retention	STAT6	chr12	-	chr12:57492686-57492797				chr12:57492685-57492686;chr12:57492797-57492798		9.09	7.94	13.71	0.00	11.76	NA	0.00	0.68	0.00	0.00	0.92	0.00	0.85	0.00	2.41	0.00	0.85	0.00	8.70	6.84	5.26	10.71	16.67	16.30	20.51	5.60	11.76	7.55	9.35	8.00	10.53	12.73	25.00	12.64	10.40	10.45	8.32	6.22	-2.10	0.600293	1.000000
N	alternative_donor	PLXND1	chr3	-	chr3:129303406-129304794	chr3:129303406-129304633		chr3:129304634-129304794	chr3:129304794-129304795		0.00	2.70	1.45	NA	NA	NA	0.80	1.52	0.00	0.80	1.32	1.33	0.00	2.04	0.85	1.00	0.77	0.00	0.00	0.00	NA	0.00	3.77	0.00	2.99	0.00	1.59	9.09	0.00	NA	NA	0.00	12.50	0.00	1.33	0.00	1.75	0.00	-1.75	0.267843	0.644832
K	jcn_only_AA	INTS1	chr7	-	chr7:1510329-1510481	chr7:1510348-1510481		chr7:1510329-1510347	chr7:1510328-1510329		5.88	5.75	0.00	2.56	5.41	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.29	0.00	6.67	0.00	3.33	0.00	2.11	0.00	4.76	0.00	0.00	0.00	8.89	14.89	7.53	4.17	4.08	5.26	3.20	0.00	-3.20	0.697736	0.866530
N	alternative_first_exon	TSTD1	chr1	-	chr1:161970129-161973545;chr1:161970129-161993046	chr1:161970129-161976086	chr1:161993047-161993644	chr1:161976087-161976263			100.00	100.00	100.00	NA	NA	NA	94.19	100.00	100.00	100.00	95.65	97.67	95.08	99.53	100.00	100.00	98.21	96.00	NA	99.59	100.00	100.00	100.00	100.00	100.00	100.00	99.34	100.00	94.74	NA	100.00	100.00	NA	100.00	100.00	100.00	97.54	100.00	2.46	0.202342	0.409282
N	jcn_only_AD	LSM6	chr4	+	chr4:147097496-147104063;chr4:147096964-147104063;chr4:147097014-147104063	chr4:147097590-147104063		chr4:147096964-147097013;chr4:147097014-147097495;chr4:147097496-147097589	chr4:147096963-147096964;chr4:147097013-147097014;chr4:147097495-147097496		0.00	0.00	4.05	0.00	0.00	NA	0.00	0.00	9.09	4.65	7.84	0.00	8.00	0.00	5.88	4.44	5.56	0.00	0.00	0.00	6.78	0.00	1.96	0.00	0.00	0.00	0.00	3.23	5.88	0.00	0.00	2.94	0.00	0.00	0.00	5.71	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	ATG4B,USP39	chr2	+	chr2:242610821-242611605	chr2:242610821-242610912		chr2:242610913-242611605	chr2:242611605-242611606		34.85	18.42	38.89	35.48	22.41	33.78	5.26	5.88	8.00	10.00	5.41	7.14	12.00	11.11	19.23	10.00	10.34	NA	16.53	36.36	32.26	27.50	25.00	45.00	21.85	53.12	36.49	40.00	28.79	55.26	33.78	36.59	18.94	42.22	30.51	47.46	17.48	34.31	16.84	0.120175	0.606219
N	jcn_only_AA	ELOF1	chr19	-	chr19:11665762-11670005;chr19:11666469-11670005	chr19:11665181-11670005					100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	93.10	98.70	100.00	NA	100.00	100.00	100.00	98.08	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4411471-4412612;chr16:4411471-4411985	chr16:4411471-4411749;chr16:4411805-4411985,chr16:4411805-4412612		chr16:4411750-4411804			2.08	0.00	0.00	0.00	4.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	2.56	6.67	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	4.76	5.41	13.33	0.00	0.00	0.00	0.00	0.00	2.32	2.32	0.054664	0.588061
N	alternative_acceptor	FUS,SNX29	chr16	+	chr16:31198158-31199645	chr16:31198158-31199202		chr16:31199203-31199645	chr16:31199645-31199646		28.48	51.32	38.57	11.03	12.44	5.63	1.73	1.10	1.01	0.96	1.81	0.69	1.92	1.50	5.74	1.27	1.51	0.68	14.00	22.99	13.25	10.34	12.27	11.28	20.83	21.56	26.25	4.69	5.45	3.79	33.60	50.00	31.11	26.01	24.03	20.55	17.41	22.27	4.86	0.843345	0.944562
N	cassette	HPCAL1	chr2	+	chr2:10537047-10559859;chr2:10546488-10559859	chr2:10546488-10548687,chr2:10537047-10548687;chr2:10548861-10559859		chr2:10548688-10548860			20.59	12.50	23.53	20.00	20.79	NA	9.36	16.67	13.64	15.11	12.28	12.22	11.89	6.25	12.50	17.33	10.58	20.34	NA	7.69	25.00	13.33	11.43	12.50	NA	0.00	3.33	18.84	18.67	20.00	NA	27.27	14.29	24.69	24.42	18.18	12.20	7.69	-4.50	0.666691	0.878382
K	alternative_acceptor	FES	chr15	+	chr15:91436425-91436520	chr15:91436425-91436501		chr15:91436502-91436520	chr15:91436520-91436521		10.20	9.09	5.00	7.69	9.68	10.53	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	5.26	7.14	3.57	10.00	6.06	NA	18.52	0.00	8.00	NA	0.00	NA	8.33	8.33	6.06	8.33	10.00	6.06	5.66	7.14	1.48	0.711255	0.890477
N	alternative_acceptor	ABRACL	chr6	+	chr6:139350013-139355291;chr6:139350013-139354885	chr6:139350013-139355295		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		5.06	9.84	0.00	0.00	8.51	0.00	8.33	2.90	5.00	3.57	5.45	0.00	6.37	4.76	3.85	3.57	7.64	5.21	7.69	7.37	7.94	0.00	0.00	0.00	0.00	5.38	5.43	10.26	5.97	4.65	10.53	0.00	4.88	5.63	5.33	2.78	7.03	5.22	-1.81	0.919413	0.978206
N	alternative_acceptor		chr9	+	chr9:140167068-140167266	chr9:140167068-140167233		chr9:140167234-140167266	chr9:140167266-140167267		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention		chr5	-	chr5:176939878-176940011				chr5:176939877-176939878;chr5:176940011-176940012		3.85	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	1.92	0.00	3.57	0.00	0.00	0.00	0.00	0.00	2.17	0.00	7.89	8.16	6.78	3.33	0.00	2.56	0.00	1.39	1.39	0.754183	1.000000
N	jcn_only_AA	NRD1	chr1	-	chr1:52260881-52263920;chr1:52260527-52263920	chr1:52260548-52263920		chr1:52260527-52260547;chr1:52260548-52260880	chr1:52260526-52260527;chr1:52260547-52260548		0.85	0.00	4.42	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	0.00	0.00	3.28	6.45	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.255815	0.663989
K	intron_retention	FMNL1	chr17	+	chr17:43309818-43310590				chr17:43309817-43309818;chr17:43310590-43310591		25.00	64.29	25.60	NA	NA	NA	15.79	19.30	11.69	31.25	30.43	25.00	17.31	19.64	13.13	14.29	21.21	18.75	NA	27.08	30.00	13.33	24.49	15.38	38.89	24.53	23.81	13.04	23.53	NA	25.00	17.39	NA	29.41	21.67	23.53	28.10	24.77	-3.34	0.625218	1.000000
N	jcn_only_AD	CIRBP	chr19	+	chr19:1271467-1271549;chr19:1271389-1271549	chr19:1271365-1271549		chr19:1271365-1271388;chr19:1271389-1271466	chr19:1271364-1271365;chr19:1271388-1271389		30.77	37.50	33.33	NA	27.78	NA	25.00	28.57	25.00	26.67	38.46	23.08	30.00	18.75	21.43	16.00	26.67	33.33	17.39	35.71	48.28	30.00	25.00	58.33	16.67	40.00	41.67	22.22	27.27	20.00	38.10	48.28	57.14	NA	43.75	17.39	27.50	33.24	5.74	0.849711	0.928405
N	alternative_acceptor	MYO9B,PVR	chr19	+	chr19:17294678-17295711;chr19:17294678-17295691;chr19:17294678-17295673	chr19:17294678-17295409		chr19:17295410-17295673;chr19:17295674-17295691;chr19:17295692-17295711	chr19:17295673-17295674;chr19:17295691-17295692;chr19:17295711-17295712		13.51	18.60	10.91	NA	NA	NA	0.00	2.13	0.00	0.00	0.00	0.00	1.06	0.00	3.23	0.00	0.62	0.00	10.00	8.11	NA	11.43	11.90	9.38	15.38	6.90	10.26	3.70	7.14	0.00	15.00	13.51	15.38	9.20	9.76	7.53	12.69	7.50	-5.19	0.556974	0.826636
K	alternative_donor	GPX4	chr19	+	chr19:1105274-1105364	chr19:1105280-1105364		chr19:1105274-1105279	chr19:1105273-1105274		94.69	95.40	92.54	95.28	96.91	98.15	93.02	91.25	91.35	93.16	95.54	97.00	94.07	95.98	92.53	93.94	94.83	96.00	97.91	98.08	95.29	97.48	96.88	97.22	95.11	92.13	91.98	98.18	97.43	98.20	95.89	96.00	98.78	97.85	95.73	96.00	95.25	95.29	0.03	0.468597	0.725428
K	cassette	SFSWAP	chr12	+	chr12:132262876-132271007	chr12:132262876-132269617;chr12:132269774-132271007		chr12:132269618-132269773			9.52	0.00	0.00	10.53	3.57	10.53	NA	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	7.14	13.33	0.00	12.50	19.23	25.00	2.44	7.69	15.00	0.00	0.00	5.56	5.56	12.00	0.00	0.00	11.11	12.50	0.00	8.61	8.61	0.015058	0.369835
K	alternative_donor	NDUFS8	chr11	+	chr11:67798618-67799618;chr11:67798429-67799618;chr11:67798345-67799618	chr11:67798201-67799618		chr11:67798201-67798344;chr11:67798345-67798428;chr11:67798429-67798617	chr11:67798200-67798201;chr11:67798344-67798345;chr11:67798428-67798429		100.00	96.25	93.48	100.00	97.96	100.00	97.26	NA	100.00	100.00	100.00	100.00	98.36	100.00	100.00	100.00	100.00	100.00	97.96	100.00	93.85	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	93.10	95.31	100.00	100.00	100.00	97.61	100.00	2.39	0.014346	0.251776
N	jcn_only_AD	PRMT2	chr21	+	chr21:48056448-48056807;chr21:48056460-48056807	chr21:48055676-48056807		chr21:48055676-48056447;chr21:48056448-48056459	chr21:48055675-48055676;chr21:48056447-48056448		46.43	20.00	26.83	15.79	23.08	19.23	20.19	15.00	17.24	17.72	19.10	17.65	18.00	14.10	25.33	12.16	9.30	12.35	33.33	34.88	50.00	32.14	25.00	10.26	45.45	22.92	16.28	26.32	12.50	16.92	55.56	30.30	35.71	21.95	23.53	16.92	26.76	28.90	2.14	0.753115	0.872874
N	alternative_acceptor	AP3D1	chr19	-	chr19:2109125-2109871;chr19:2109207-2109871	chr19:2109344-2109871		chr19:2109125-2109206;chr19:2109207-2109343	chr19:2109124-2109125;chr19:2109206-2109207		2.17	3.23	6.12	11.11	0.00	14.29	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	4.00	6.06	4.55	0.00	0.00	3.57	6.52	0.00	0.00	8.33	3.57	4.65	0.00	4.08	2.22	3.57	0.00	3.40	3.40	0.021271	0.527491
K	cassette	HNRNPDL	chr4	-	chr4:83346037-83347189	chr4:83346037-83346715;chr4:83346821-83347189		chr4:83346716-83346820			38.64	35.00	48.72	27.66	20.19	32.61	10.71	17.65	32.81	12.75	7.45	9.09	8.54	18.42	11.61	6.94	3.92	2.53	25.24	35.19	25.27	29.90	24.00	30.99	39.19	35.90	31.37	21.84	21.21	22.45	61.82	58.93	35.25	35.96	32.39	34.33	30.12	35.55	5.43	0.320257	0.709176
N	alternative_last_exon	PARL	chr3	-	chr3:183544521-183551279;chr3:183535900-183551279	chr3:183547498-183551279	chr3:183535782-183535899	chr3:183547173-183547497			100.00	100.00	95.18	100.00	100.00	100.00	96.70	NA	100.00	100.00	97.01	100.00	100.00	87.50	94.12	100.00	97.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	94.92	100.00	100.00	100.00	100.00	0.00	0.485085	0.633164
K	cassette	ARL2	chr11	+	chr11:64786206-64789192	chr11:64786206-64787890;chr11:64787972-64789192		chr11:64787891-64787971			80.95	95.96	100.00	100.00	94.23	96.30	95.71	100.00	94.29	97.56	96.30	100.00	100.00	94.12	95.35	90.00	95.38	100.00	94.59	94.12	94.55	100.00	100.00	NA	100.00	100.00	97.06	100.00	97.92	100.00	94.12	100.00	94.12	94.74	87.10	100.00	95.83	94.12	-1.71	0.382882	0.709410
K	intron_retention	HAX1	chr1	+	chr1:154247478-154247629				chr1:154247477-154247478;chr1:154247629-154247630		5.95	6.74	10.00	6.67	6.52	5.56	0.00	0.00	0.83	2.27	0.00	0.00	3.51	0.00	2.04	0.00	0.00	0.00	3.92	9.59	4.39	8.51	5.10	16.28	13.64	7.79	7.92	7.32	5.48	5.08	7.14	12.17	6.67	7.69	7.50	8.82	5.29	6.54	1.25	0.713208	1.000000
N	alternative_acceptor	ARMC9	chr2	+	chr2:232156157-232158497;chr2:232156157-232160910	chr2:232156157-232158502		chr2:232158498-232158502;chr2:232158503-232160910	chr2:232158502-232158503;chr2:232160910-232160911		8.33	2.70	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.85	NA	0.00	0.00	2.38	0.00	1.32	NA	0.00	0.00	0.00	0.00	6.25	4.55	3.33	7.14	9.09	0.00	1.58	3.12	1.54	0.403660	0.719111
K	intron_retention		chr13	-	chr13:33095587-33096318				chr13:33095586-33095587;chr13:33096318-33096319		23.08	14.71	34.29	18.75	17.24	18.75	10.53	0.00	3.23	0.00	0.00	0.00	11.54	0.00	5.41	6.25	0.00	0.00	15.38	23.81	22.73	21.43	11.11	20.00	NA	20.00	33.33	28.57	18.75	20.00	9.09	41.18	12.50	29.17	26.67	29.41	12.50	14.54	2.04	0.438010	1.000000
K	cassette	PPP2R3C	chr14	-	chr14:35557217-35564253	chr14:35557217-35560275;chr14:35560414-35564253		chr14:35560276-35560413			98.25	100.00	95.24	93.94	100.00	96.88	96.77	100.00	100.00	93.10	97.06	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	97.30	98.68	97.56	96.49	98.18	100.00	95.77	95.83	100.00	96.55	96.77	100.00	100.00	0.00	0.609512	0.853757
N	alternative_acceptor	IST1,UQCRC2	chr16	+	chr16:21987565-21991243;chr16:21987565-21991867	chr16:21987565-21990203		chr16:21990204-21991243;chr16:21991244-21991867	chr16:21991243-21991244;chr16:21991867-21991868		4.40	1.66	7.58	1.18	2.73	0.00	0.43	1.92	0.99	0.48	1.08	0.53	1.30	1.75	1.40	1.25	1.30	0.68	2.19	6.45	2.13	7.69	6.19	7.45	1.00	7.84	6.72	5.43	5.11	4.55	5.56	6.06	1.57	5.39	5.42	5.11	1.44	4.98	3.55	0.020691	0.527491
K	alternative_acceptor	SPARC	chr5	-	chr5:151046071-151047027	chr5:151046086-151047027		chr5:151046071-151046085	chr5:151046070-151046071		0.00	0.00	0.00	NA	0.00	NA	0.45	0.00	0.00	0.00	0.66	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	cassette	TMEM50A	chr1	+	chr1:25667071-25678116;chr1:25664948-25678116	chr1:25664948-25669451,chr1:25667071-25669451;chr1:25669565-25678116		chr1:25669452-25669564			99.52	98.48	98.55	98.18	96.74	100.00	98.00	99.45	98.51	97.03	97.98	97.13	98.73	98.38	98.27	96.05	98.24	96.79	100.00	99.39	98.89	97.87	99.13	98.20	86.96	99.22	98.63	94.38	99.42	98.62	99.32	98.90	100.00	99.05	98.22	97.29	98.61	99.35	0.75	0.334224	0.709176
N	cassette	SNRPD3	chr22	+	chr22:24954201-24967883;chr22:24953769-24967883	chr22:24954201-24963951,chr22:24953769-24963951;chr22:24964006-24967883		chr22:24963952-24964005			100.00	95.52	100.00	97.06	100.00	94.29	91.23	100.00	95.24	98.31	100.00	94.44	92.31	100.00	98.21	92.00	98.72	97.83	94.74	96.55	94.20	100.00	95.92	93.94	100.00	85.19	95.74	93.55	100.00	94.74	100.00	95.12	93.44	100.00	95.00	95.83	94.09	100.00	5.91	0.403411	0.718625
N	cassette	YBX1	chr1	+	chr1:43159195-43162312;chr1:43159195-43162850	chr1:43159195-43161869;chr1:43161960-43162850,chr1:43161960-43162312		chr1:43161870-43161959			98.36	100.00	98.20	97.20	98.13	100.00	99.75	100.00	98.71	99.50	99.50	99.59	99.74	99.24	99.24	99.53	99.62	99.94	98.00	95.31	97.62	98.72	99.31	99.14	100.00	99.05	98.06	99.80	99.53	99.51	94.59	91.94	96.24	98.84	98.42	99.17	99.75	98.70	-1.04	0.309838	0.709176
K	alternative_acceptor	SUPT5H	chr19	+	chr19:39936278-39936521;chr19:39936278-39936518	chr19:39936278-39936443		chr19:39936444-39936518;chr19:39936519-39936521	chr19:39936518-39936519;chr19:39936521-39936522		84.62	96.88	86.05	NA	75.00	NA	82.22	76.67	89.01	74.07	69.49	81.25	82.46	82.61	87.88	70.59	70.97	62.16	71.43	85.37	75.00	77.27	76.79	68.97	78.43	87.76	84.75	88.00	82.14	76.00	74.07	78.69	76.47	76.27	75.44	78.87	80.33	83.62	3.29	0.900497	0.965081
K	intron_retention	PCNX	chr14	+	chr14:71576549-71576699				chr14:71576548-71576549;chr14:71576699-71576700		96.15	100.00	92.86	90.91	93.33	92.31	91.67	97.50	92.11	96.77	100.00	96.08	93.33	93.00	95.88	100.00	88.89	94.59	82.14	88.57	90.62	NA	100.00	92.31	100.00	90.32	93.75	96.15	100.00	92.93	81.03	88.24	100.00	90.00	90.91	93.33	96.66	91.66	-5.00	0.822094	1.000000
K	jcn_only_AD	CES2,RP11-361L15.4	chr16	+	chr16:66976641-66977201	chr16:66976689-66977201		chr16:66976641-66976688	chr16:66976640-66976641		75.00	70.97	68.06	NA	67.65	82.35	83.87	100.00	95.24	89.29	94.00	86.96	92.86	100.00	82.76	91.67	90.00	92.86	76.19	75.00	76.92	85.71	78.79	61.54	60.00	88.89	76.19	90.00	83.33	84.62	70.83	73.33	88.00	70.97	79.31	83.33	80.03	81.94	1.91	0.407663	0.671935
N	alternative_acceptor	JDP2	chr14	+	chr14:75904825-75911792;chr14:75904825-75928128	chr14:75904825-75928132		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		0.00	0.00	1.96	0.00	7.69	0.00	3.85	2.22	2.63	0.00	2.38	2.60	0.00	3.45	0.00	0.00	4.51	0.00	11.11	0.00	0.00	NA	0.00	0.00	0.00	5.71	0.00	0.00	0.00	5.88	0.00	2.86	0.00	4.35	6.56	5.56	0.00	1.11	1.11	0.781113	0.917646
N	cassette	SIGLEC1	chr20	-	chr20:3678781-3681988;chr20:3678781-3683843	chr20:3678781-3679848;chr20:3680107-3681988,chr20:3680107-3683843		chr20:3679849-3680106			97.67	100.00	100.00	NA	NA	NA	94.51	96.98	97.07	93.90	94.97	96.95	96.83	98.96	98.92	100.00	97.14	98.54	NA	95.70	NA	100.00	100.00	100.00	100.00	98.39	94.23	100.00	100.00	97.30	100.00	97.87	NA	95.65	81.82	93.13	98.41	98.03	-0.38	0.941268	0.985246
N	jcn_only_AA	TRIM28	chr19	+	chr19:59060144-59060252;chr19:59060144-59060228;chr19:59060144-59060231	chr19:59060144-59060206		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.00	1.41	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	5.26	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.196374	0.663989
N	jcn_only_AA	GCA	chr2	+	chr2:163216063-163227815;chr2:163216063-163218409;chr2:163216063-163236413;chr2:163216063-163216702;chr2:163216063-163216735	chr2:163216063-163216726		chr2:163216703-163216726;chr2:163216727-163216735;chr2:163216736-163218409;chr2:163218410-163227815;chr2:163227816-163236413	chr2:163216726-163216727;chr2:163216735-163216736;chr2:163218409-163218410;chr2:163227815-163227816;chr2:163236413-163236414		93.33	88.14	94.92	84.62	83.33	85.29	98.44	97.25	100.00	98.63	100.00	98.32	100.00	96.00	98.70	97.30	97.62	100.00	89.47	89.22	93.02	100.00	92.86	93.98	79.59	91.82	93.60	100.00	100.00	95.15	86.96	92.23	88.00	97.50	100.00	94.06	88.81	92.57	3.77	0.615006	0.824448
K	intron_retention	GADD45G	chr9	+	chr9:92220449-92220581				chr9:92220448-92220449;chr9:92220581-92220582		7.46	0.00	11.76	6.50	6.45	7.25	0.00	0.00	0.91	0.64	0.00	1.05	NA	0.00	2.70	1.48	0.00	1.69	15.62	7.58	5.36	7.69	7.14	7.77	8.11	9.30	9.09	7.45	10.53	5.56	11.59	11.11	14.29	10.26	0.00	6.67	8.11	7.52	-0.59	0.935418	1.000000
K	cassette	SAP30L	chr5	+	chr5:153830774-153832961	chr5:153830774-153832015;chr5:153832060-153832961		chr5:153832016-153832059			11.90	12.96	15.62	5.88	12.50	11.43	6.25	14.29	14.29	6.06	3.03	0.00	2.86	21.88	9.68	11.11	5.26	3.70	6.52	11.54	13.33	0.00	7.41	13.33	8.57	24.14	7.89	6.67	8.00	9.09	14.81	14.29	7.32	8.33	11.11	7.50	6.92	14.55	7.63	0.007186	0.267181
K	intron_retention		chr14	-	chr14:24805602-24806090				chr14:24805601-24805602;chr14:24806090-24806091		13.04	4.55	14.29	NA	13.64	9.09	0.00	1.56	0.00	NA	0.00	0.00	0.00	1.56	5.88	0.00	0.00	NA	0.00	10.87	6.45	NA	9.52	8.33	0.00	9.84	11.11	9.09	5.00	0.00	13.33	11.11	0.00	NA	NA	10.00	0.00	10.36	10.36	0.078173	1.000000
K	cassette	TM2D1	chr1	-	chr1:62149219-62160368	chr1:62149219-62152463;chr1:62152594-62160368		chr1:62152464-62152593			11.11	15.79	25.81	18.75	11.11	18.18	18.42	12.50	23.33	11.11	18.87	13.89	9.80	19.05	25.58	13.51	14.29	13.33	15.79	13.04	21.43	13.64	20.45	16.13	23.53	25.00	22.81	8.33	11.11	11.11	21.05	44.12	38.89	17.14	23.68	21.95	17.11	16.05	-1.06	0.490098	0.775707
N	cassette	SERPINA1	chr14	-	chr14:94854998-94856793;chr14:94849579-94856793;chr14:94849579-94856756;chr14:94855001-94856756;chr14:94855001-94856793	chr14:94855001-94855155,chr14:94849579-94855155,chr14:94854998-94855155;chr14:94855348-94856756,chr14:94855348-94856793		chr14:94855156-94855347			2.03	2.86	2.81	12.50	0.00	NA	2.22	8.72	8.13	8.70	0.00	13.16	7.84	12.83	11.17	17.07	5.41	17.72	NA	2.44	0.00	10.00	0.00	6.78	0.00	8.23	5.12	8.57	0.00	23.71	0.00	2.00	NA	0.00	3.45	3.67	2.54	5.33	2.79	0.370974	0.709176
N	cassette	APMAP	chr20	-	chr20:24944659-24950161	chr20:24944659-24949527;chr20:24949721-24950161		chr20:24949528-24949720			79.57	89.56	78.81	90.48	91.57	100.00	93.02	93.33	86.90	93.97	91.52	100.00	88.75	92.68	84.35	95.56	81.94	100.00	84.29	82.14	84.75	93.20	86.93	96.51	86.89	90.91	74.81	96.39	93.64	93.44	79.17	74.38	85.06	91.14	84.91	90.62	87.82	86.53	-1.29	0.607977	0.853757
N	jcn_only_AA	E2F4	chr16	+	chr16:67231815-67231949;chr16:67231815-67231910;chr16:67231815-67233183	chr16:67231815-67232033		chr16:67231911-67231949;chr16:67231950-67232033;chr16:67232034-67233183	chr16:67231949-67231950;chr16:67232033-67232034;chr16:67233183-67233184		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.82	0.00	2.65	0.00	2.70	0.00	0.00	0.00	1.16	5.97	0.00	0.00	4.17	0.00	1.19	1.47	0.00	0.00	0.00	0.00	1.14	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	EPN1	chr19	+	chr19:56186802-56188411;chr19:56186802-56189892	chr19:56186802-56189872		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		2.63	0.00	0.00	NA	0.00	NA	4.05	6.67	5.13	15.00	6.10	0.00	3.45	0.00	5.41	3.45	6.19	0.00	NA	0.00	0.00	0.00	4.65	NA	0.00	0.00	6.67	0.00	3.45	NA	15.79	7.14	NA	0.00	0.00	0.00	1.73	1.31	-0.41	0.435177	0.704121
N	jcn_only_AA	SLC39A13	chr11	+	chr11:67816905-67817129	chr11:67816905-67817084		chr11:67817085-67817129	chr11:67817129-67817130		7.14	0.00	0.00	13.33	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	2.50	NA	NA	NA	0.00	0.00	9.52	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	RAF1	chr3	-	chr3:12626481-12626620				chr3:12626480-12626481;chr3:12626620-12626621		9.33	0.00	7.83	10.00	8.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	NA	4.35	0.00	4.26	7.81	1.92	NA	7.14	3.70	3.03	6.00	2.78	0.00	4.85	9.09	5.80	8.96	8.96	0.00	2.17	2.17	0.974851	1.000000
N	jcn_only_AA	SKIV2L	chr6	+	chr6:31936316-31936412;chr6:31936316-31936399	chr6:31936316-31936462		chr6:31936400-31936412;chr6:31936413-31936462	chr6:31936412-31936413;chr6:31936462-31936463		80.56	65.33	66.67	66.67	65.71	57.14	100.00	86.67	73.33	NA	NA	NA	90.91	NA	85.71	91.67	87.50	NA	82.61	73.68	87.50	NA	83.33	NA	88.89	70.97	82.35	81.82	70.59	75.00	67.50	71.70	70.00	81.25	59.09	79.31	85.75	73.68	-12.07	0.299002	0.663989
N	cassette	GPBP1	chr5	+	chr5:56545404-56557006	chr5:56545404-56546780;chr5:56546969-56557006		chr5:56546781-56546968			100.00	95.74	97.47	96.55	96.67	100.00	100.00	96.88	100.00	98.53	100.00	100.00	100.00	100.00	97.89	100.00	100.00	98.62	91.18	97.96	96.92	100.00	100.00	97.74	100.00	98.61	100.00	100.00	100.00	98.00	93.48	93.33	100.00	95.40	100.00	96.59	100.00	98.28	-1.72	0.999282	0.999873
K	intron_retention		chr9	-	chr9:130494558-130494842				chr9:130494557-130494558;chr9:130494842-130494843		12.50	4.76	12.50	14.29	18.18	NA	0.00	0.00	0.00	0.00	6.06	NA	0.00	4.35	0.00	6.06	7.89	NA	12.50	6.25	8.33	7.69	14.29	NA	0.00	18.75	23.33	0.00	10.34	0.00	7.69	9.52	14.29	6.67	9.52	0.00	2.38	6.97	4.59	0.811560	1.000000
K	alternative_donor	TCIRG1	chr11	+	chr11:67808814-67809219	chr11:67808856-67809219		chr11:67808814-67808855	chr11:67808813-67808814		91.00	100.00	93.20	NA	81.25	NA	87.50	88.20	89.09	95.12	91.36	85.42	91.43	91.07	90.91	95.31	91.53	93.33	NA	92.63	93.10	96.15	90.74	90.62	100.00	94.34	95.89	100.00	95.00	84.62	91.11	93.75	93.33	95.00	91.07	93.75	93.33	91.09	-2.24	0.291227	0.650093
N	jcn_only_AD	CFLAR	chr2	+	chr2:202000831-202005079	chr2:202003688-202005079		chr2:202000831-202003687	chr2:202000830-202000831		4.41	0.00	5.76	4.67	8.00	1.50	6.67	8.08	16.40	3.40	10.00	2.30	4.84	12.07	14.06	5.13	6.90	2.72	0.00	4.91	3.70	2.69	4.44	2.68	NA	7.77	0.00	8.91	0.00	5.13	4.45	5.00	0.00	7.19	2.08	3.33	0.00	6.34	6.34	0.038120	0.465376
N	jcn_only_AD	HSCB	chr22	+	chr22:29138320-29139869;chr22:29138369-29139869;chr22:29138717-29139869;chr22:29138521-29139869	chr22:29138926-29139869		chr22:29138320-29138368;chr22:29138369-29138520;chr22:29138521-29138716;chr22:29138717-29138925	chr22:29138319-29138320;chr22:29138368-29138369;chr22:29138520-29138521;chr22:29138716-29138717		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	15.79	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr16	-	chr16:28855423-28855550				chr16:28855422-28855423;chr16:28855550-28855551		14.08	10.41	18.75	12.86	16.15	13.10	1.09	0.00	1.45	1.19	2.65	0.00	2.89	0.00	0.00	2.00	1.69	0.00	9.55	9.86	8.18	18.57	13.85	18.97	12.41	10.34	13.13	7.69	9.76	8.57	28.85	27.63	16.00	16.05	19.35	20.45	9.98	10.10	0.12	0.918494	1.000000
N	alternative_donor	HNRNPA2B1	chr7	-	chr7:26237487-26240191	chr7:26237487-26239268		chr7:26239269-26240191	chr7:26240191-26240192		21.65	26.92	26.47	13.33	9.09	NA	0.82	2.68	2.50	1.32	0.93	0.64	1.27	5.41	7.07	2.01	1.70	0.69	NA	15.31	9.09	17.50	15.12	19.53	41.18	17.65	13.16	2.60	4.35	3.77	20.00	23.96	NA	18.87	11.41	20.11	14.10	16.48	2.38	0.739114	0.891105
N	jcn_only_AA	METTL17	chr14	+	chr14:21464871-21464928;chr14:21464871-21464943	chr14:21464871-21464970		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		0.00	2.25	9.52	0.00	9.80	0.00	NA	NA	NA	NA	9.09	NA	15.00	NA	NA	NA	NA	NA	7.06	0.00	9.30	NA	11.43	NA	0.00	0.00	5.88	NA	0.00	0.00	6.25	5.88	12.64	0.00	15.79	6.67	7.06	0.00	-7.06	0.126146	0.663989
K	intron_retention	PROSER1	chr13	-	chr13:39586371-39586827				chr13:39586370-39586371;chr13:39586827-39586828		2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	3.85	0.00	0.00	0.00	0.00	5.26	5.26	0.00	5.88	0.00	0.00	5.26	0.00	8.00	3.33	0.00	0.00	1.14	1.14	0.413967	1.000000
K	intron_retention	RFNG	chr17	-	chr17:80008432-80008537				chr17:80008431-80008432;chr17:80008537-80008538		8.00	11.54	18.75	NA	NA	NA	0.00	0.00	0.00	0.00	4.00	NA	4.35	7.69	8.33	0.00	0.00	NA	NA	16.67	4.17	NA	20.00	NA	NA	15.38	11.11	NA	4.35	NA	0.00	10.00	16.67	NA	25.00	20.00	7.94	7.85	-0.10	0.954446	1.000000
K	jcn_only_AA	SLC43A3	chr11	-	chr11:57193790-57194060;chr11:57193863-57194060	chr11:57193826-57194060		chr11:57193790-57193825;chr11:57193826-57193862	chr11:57193789-57193790;chr11:57193825-57193826		78.82	100.00	84.40	NA	71.43	NA	78.29	73.27	73.93	63.66	76.11	66.10	87.36	70.69	75.86	78.19	81.89	74.37	NA	82.14	73.33	74.56	74.29	71.27	100.00	78.76	83.50	66.32	81.08	70.83	88.64	85.07	NA	72.06	82.27	76.83	93.68	78.79	-14.89	0.090554	0.663989
N	alternative_donor	OLFML2B,SLC25A24	chr1	-	chr1:161954771-161967614	chr1:161954771-161966071		chr1:161966072-161967614	chr1:161967614-161967615		1.47	2.99	1.17	NA	5.00	NA	0.00	0.96	0.00	0.00	1.39	0.00	1.45	1.38	0.00	0.00	0.00	0.00	15.38	1.02	1.79	0.00	1.16	0.00	NA	1.46	0.69	0.00	1.59	0.00	1.75	0.00	10.00	0.00	2.70	0.00	2.99	1.42	-1.57	0.187712	0.565751
N	jcn_only_AD		chr1	-	chr1:1571844-1635262	chr1:1571844-1572043					100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.03	94.44	100.00	91.67	97.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.960912	0.978954
N	alternative_last_exon	LRRC25	chr19	-	chr19:18507637-18508262;chr19:18502936-18508262	chr19:18507783-18508262	chr19:18501954-18502935	chr19:18506995-18507782			98.48	91.27	98.60	92.31	92.41	NA	99.00	99.08	100.00	100.00	99.17	100.00	99.66	99.38	97.56	98.78	98.04	100.00	79.25	96.84	98.18	96.97	96.51	100.00	95.08	99.33	99.61	98.18	99.20	95.00	92.86	95.00	97.10	98.15	98.03	95.65	96.09	98.78	2.69	0.257723	0.472280
N	alternative_acceptor	CPSF6	chr12	+	chr12:69653978-69656152	chr12:69653978-69656149		chr12:69656150-69656152	chr12:69656152-69656153		0.00	0.00	0.00	0.00	0.00	0.00	3.23	6.25	4.17	3.77	0.00	4.35	3.12	0.00	0.00	3.12	1.64	0.00	5.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	2.44	3.23	3.12	3.03	NA	3.12	4.55	3.33	0.00	0.00	3.17	0.00	-3.17	0.389755	0.709013
N	cassette	MICAL1	chr6	-	chr6:109768938-109769405;chr6:109768926-109769405	chr6:109768926-109769077,chr6:109768938-109769077;chr6:109769167-109769405		chr6:109769078-109769166			100.00	94.12	100.00	NA	87.50	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	96.30	85.71	100.00	88.46	81.82	100.00	100.00	100.00	100.00	97.14	100.00	88.89	88.89	100.00	82.35	100.00	90.91	100.00	100.00	0.00	0.568553	0.829613
K	intron_retention	IAH1	chr2	+	chr2:9628522-9629106				chr2:9628521-9628522;chr2:9629106-9629107		100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.68	100.00	90.91	100.00	92.11	100.00	93.02	100.00	90.32	100.00	97.83	100.00	100.00	97.92	100.00	95.31	100.00	100.00	100.00	93.18	100.00	94.12	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	0.00	0.319393	1.000000
K	intron_retention		chrX	+	chrX:153609163-153609241				chrX:153609162-153609163;chrX:153609241-153609242		11.43	8.51	6.12	3.95	2.88	5.41	0.00	0.00	0.00	2.59	1.23	0.00	0.00	0.00	2.63	1.56	0.00	0.00	7.14	8.82	5.56	6.02	4.20	3.23	0.00	5.13	3.64	0.00	1.19	1.37	27.08	16.98	21.43	2.59	4.48	3.20	3.57	6.97	3.40	0.925404	1.000000
N	cassette	LINC00152	chr2	+	chr2:87755165-87779741;chr2:87769562-87820725;chr2:87755165-87772258;chr2:87769562-87779741;chr2:87755165-87820725	chr2:87755165-87769668,chr2:87769562-87769668;chr2:87769824-87820725,chr2:87769824-87772258,chr2:87769824-87779741		chr2:87769669-87769823			NA	0.00	NA	12.00	4.55	17.26	0.00	11.11	0.00	2.38	2.15	6.11	0.00	7.69	4.76	2.40	0.69	4.36	0.00	NA	2.56	9.47	6.76	18.28	0.00	18.18	0.00	1.00	0.82	5.63	15.38	0.00	0.00	8.28	4.26	20.00	0.00	13.25	13.25	0.010932	0.314700
K	intron_retention	PI4KB	chr1	-	chr1:151265510-151266493				chr1:151265509-151265510;chr1:151266493-151266494		6.25	18.18	3.92	0.00	2.70	0.00	0.00	2.63	0.00	0.00	3.45	0.00	5.13	2.27	1.39	0.00	2.78	0.00	4.17	6.67	3.45	9.09	3.45	9.09	0.00	13.95	7.55	12.50	3.39	3.57	5.26	4.65	9.09	10.00	6.25	6.82	4.65	5.75	1.10	0.919175	1.000000
K	intron_retention	SH3GL1	chr19	-	chr19:4363876-4364084				chr19:4363875-4363876;chr19:4364084-4364085		0.00	11.11	4.48	0.00	0.00	NA	1.56	0.00	0.00	0.00	1.01	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.44	9.09	0.00	3.61	0.00	11.76	0.00	3.92	0.00	0.00	0.00	0.00	2.13	16.67	2.04	1.45	2.70	11.11	0.00	-11.11	0.587315	1.000000
N	cassette	SNX17	chr2	+	chr2:27597626-27598372	chr2:27597626-27597927;chr2:27598021-27598372		chr2:27597928-27598020			100.00	100.00	98.75	100.00	100.00	NA	99.26	100.00	100.00	97.83	100.00	100.00	99.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	97.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	97.85	100.00	99.64	100.00	0.36	0.248281	0.709176
K	jcn_only_AD	RPL38	chr17	+	chr17:72199885-72200056;chr17:72199910-72200056	chr17:72199850-72200056		chr17:72199850-72199884;chr17:72199885-72199909	chr17:72199849-72199850;chr17:72199884-72199885		14.71	17.00	16.24	14.42	13.13	14.95	16.14	20.14	15.69	21.97	23.79	23.34	16.49	13.79	14.72	14.53	22.99	21.96	11.49	12.86	12.38	12.79	10.17	13.62	15.94	12.93	16.55	12.84	9.70	11.13	10.89	11.99	13.40	12.77	15.34	12.20	16.04	13.36	-2.68	0.597307	0.801001
K	jcn_only_AA	MAPKAPK2	chr1	+	chr1:206905265-206905919	chr1:206905265-206905382		chr1:206905383-206905919	chr1:206905919-206905920		14.39	0.00	13.99	8.62	7.32	10.84	14.47	9.16	6.75	10.40	10.74	14.22	8.20	4.95	6.78	11.19	12.15	12.50	0.00	12.00	9.52	9.77	6.03	9.80	NA	18.52	9.80	8.53	8.75	9.87	18.00	16.27	9.09	12.02	13.00	14.75	8.20	13.20	5.00	0.104165	0.663989
N	jcn_only_AA	TRAPPC2L	chr16	+	chr16:88926381-88927321;chr16:88926381-88927300;chr16:88926381-88927358	chr16:88926381-88927318		chr16:88927301-88927318;chr16:88927319-88927321;chr16:88927322-88927358	chr16:88927318-88927319;chr16:88927321-88927322;chr16:88927358-88927359	chr16:88926301-88926380;chr16:88927359-88927717	35.14	42.44	36.36	35.43	36.03	36.40	30.61	NA	28.12	32.73	35.42	41.67	34.86	23.08	35.71	35.00	35.45	31.71	40.74	40.74	36.65	37.50	39.01	37.25	37.77	18.18	37.29	34.69	36.75	30.77	43.59	31.34	34.76	38.75	33.33	41.67	36.31	35.14	-1.17	0.410969	0.683312
N	jcn_only_AA	VSIG4	chrX	-	chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242252-65242682;chrX:65242343-65242682	chrX:65242009-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		36.36	31.71	39.06	44.20	35.70	54.90	14.29	28.89	39.62	16.18	15.69	15.37	13.75	20.98	40.82	17.77	12.67	13.72	46.12	39.34	62.50	41.32	28.26	26.83	44.26	35.78	29.06	28.87	23.28	25.96	60.98	56.72	42.80	28.47	27.27	25.21	37.25	36.07	-1.18	0.563612	0.793185
N	alternative_acceptor	SAMD4B	chr19	+	chr19:39873932-39874347;chr19:39873932-39875178;chr19:39873932-39875991	chr19:39873932-39874138		chr19:39874139-39874347;chr19:39874348-39875178;chr19:39875179-39875991	chr19:39874347-39874348;chr19:39875178-39875179;chr19:39875991-39875992		81.58	90.00	86.67	39.13	68.97	25.93	77.27	94.87	88.64	92.45	96.97	94.87	90.91	85.71	76.00	88.37	97.22	87.88	53.33	83.87	61.54	90.91	75.00	91.30	NA	84.44	81.58	89.29	93.33	83.33	70.37	80.56	NA	94.59	91.30	87.18	83.63	84.16	0.52	0.582315	0.841528
K	intron_retention	ARRDC1	chr9	+	chr9:140507963-140508066				chr9:140507962-140507963;chr9:140508066-140508067		5.71	0.00	17.39	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.44	NA	0.00	0.00	7.14	NA	0.00	NA	12.50	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.356225	1.000000
K	jcn_only_AD	MZT2B	chr2	+	chr2:130940026-130940199;chr2:130939404-130940199	chr2:130939371-130940199		chr2:130939371-130939403;chr2:130939404-130940025	chr2:130939370-130939371;chr2:130939403-130939404		2.08	1.36	6.82	2.56	3.39	1.67	3.65	0.00	2.27	1.67	1.38	1.15	3.74	0.00	2.33	2.38	0.78	2.67	2.44	0.00	4.02	4.41	3.93	4.17	3.15	0.00	4.26	0.00	3.70	3.97	2.70	5.00	2.56	1.59	3.57	3.09	2.85	0.00	-2.85	0.010391	0.253705
N	alternative_acceptor	TMEM106A	chr17	+	chr17:41365911-41367806	chr17:41365911-41366009		chr17:41366010-41367806	chr17:41367806-41367807		4.55	41.67	8.70	NA	NA	NA	0.00	0.43	0.00	0.00	0.00	0.49	1.35	0.39	0.96	1.79	1.05	0.54	63.64	6.82	NA	9.09	NA	3.51	71.43	4.88	11.76	14.29	18.75	10.00	17.39	20.00	66.67	20.00	17.65	9.09	52.66	4.71	-47.94	0.046404	0.570243
K	intron_retention	CCDC88A	chr2	-	chr2:55522864-55523085				chr2:55522863-55522864;chr2:55523085-55523086		86.15	84.21	91.36	72.73	84.38	NA	82.98	84.51	89.58	73.68	86.07	75.00	85.71	83.52	90.91	80.85	87.39	73.08	76.92	84.48	89.66	74.29	83.61	77.78	NA	90.32	87.72	74.36	86.67	66.67	88.00	88.89	58.33	81.82	88.31	88.57	82.98	85.33	2.35	0.570562	1.000000
N	intron_retention		chr17	-	chr17:62775198-62775380				chr17:62775197-62775198;chr17:62775380-62775381		88.89	90.77	93.10	NA	84.62	81.82	NA	NA	NA	NA	NA	NA	72.73	75.00	84.62	NA	48.15	NA	81.58	78.26	76.47	NA	84.85	70.00	75.00	87.50	73.68	NA	66.67	NA	82.35	84.00	87.18	60.00	80.77	61.90	81.58	82.35	0.77	0.976392	1.000000
N	alternative_last_exon	GBGT1	chr9	-	chr9:136029495-136030564,chr9:136029551-136030564;chr9:135987540-136030564	chr9:136029630-136030564,chr9:136029649-136030564	chr9:135987429-135987539	chr9:136028340-136029629			97.98	100.00	97.50	100.00	98.39	100.00	95.52	94.55	98.18	100.00	97.06	95.45	94.25	100.00	95.56	93.22	95.88	100.00	100.00	97.30	100.00	95.00	96.36	100.00	100.00	100.00	97.71	100.00	98.68	100.00	94.29	98.65	100.00	91.43	94.23	100.00	100.00	97.64	-2.36	0.543795	0.690416
N	alternative_acceptor		chr19	+	chr19:35514452-35514600;chr19:35514452-35514608;chr19:35514452-35517018;chr19:35514452-35516916	chr19:35514452-35516952		chr19:35514601-35514608;chr19:35514609-35516916;chr19:35516917-35516952;chr19:35516953-35517018	chr19:35514608-35514609;chr19:35516916-35516917;chr19:35516952-35516953;chr19:35517018-35517019		95.04	96.77	94.10	97.00	100.00	97.81	100.00	98.82	98.69	98.45	100.00	98.77	100.00	98.43	97.26	98.26	100.00	98.42	98.04	94.76	97.08	92.82	93.10	92.67	100.00	94.78	96.11	95.26	100.00	97.09	95.37	96.12	98.48	90.60	94.12	93.66	99.24	95.21	-4.03	0.019844	0.527491
K	jcn_only_AA	FDXR	chr17	-	chr17:72863002-72868160;chr17:72863021-72868160	chr17:72862999-72868160		chr17:72862999-72863001;chr17:72863002-72863020	chr17:72862998-72862999;chr17:72863001-72863002		85.71	89.66	84.62	NA	NA	NA	88.00	NA	86.67	NA	83.33	NA	86.21	90.00	84.21	NA	NA	NA	91.67	83.33	81.25	NA	NA	NA	100.00	NA	78.95	NA	NA	NA	88.46	85.51	89.66	NA	72.22	90.00	89.66	87.08	-2.58	0.144167	0.663989
K	intron_retention	TCEAL3	chrX	+	chrX:102863602-102863965				chrX:102863601-102863602;chrX:102863965-102863966		0.00	9.09	2.44	0.00	2.44	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	ID2	chr2	+	chr2:8823037-8823814				chr2:8823036-8823037;chr2:8823814-8823815		7.52	3.45	6.10	0.95	2.55	1.49	0.00	0.93	0.73	0.17	0.52	0.30	0.00	0.00	1.20	0.59	0.26	0.30	1.92	5.61	2.33	2.58	3.30	3.52	NA	4.76	7.53	3.31	1.66	2.01	9.62	6.78	5.26	3.43	3.54	2.90	1.92	5.19	3.27	0.401348	1.000000
N	jcn_only_AA	SART1	chr11	+	chr11:65729565-65731432;chr11:65729565-65731476	chr11:65729565-65731544		chr11:65731433-65731476;chr11:65731477-65731544	chr11:65731476-65731477;chr11:65731544-65731545		88.57	100.00	89.66	NA	88.89	NA	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	90.91	NA	92.86	88.89	100.00	88.57	100.00	100.00	100.00	96.00	100.00	92.86	100.00	84.62	90.00	100.00	94.44	88.24	96.67	100.00	96.43	-3.57	0.094284	0.663989
K	jcn_only_AD	INTS1	chr7	-	chr7:1511278-1511908	chr7:1511278-1511878		chr7:1511879-1511908	chr7:1511908-1511909		0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	4.17	0.00	7.41	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	2.38	2.63	1.06	3.57	0.00	2.70	0.00	0.00	0.00	0.628170	0.817290
N	jcn_only_AD	STAT3	chr17	-	chr17:40469243-40471873;chr17:40469243-40474299	chr17:40469243-40474302		chr17:40471874-40474299;chr17:40474300-40474302	chr17:40474299-40474300;chr17:40474302-40474303		20.90	12.12	18.73	20.63	20.59	17.00	16.88	20.09	19.82	21.96	15.00	18.85	18.57	15.35	20.20	20.00	17.50	19.75	17.24	20.81	14.29	18.97	19.67	15.87	20.00	22.15	18.68	12.20	16.36	15.35	16.67	17.02	11.76	20.30	18.31	17.93	17.06	20.45	3.39	0.099317	0.639657
N	alternative_acceptor	TTYH3	chr7	+	chr7:2671913-2673737;chr7:2671913-2686486	chr7:2671913-2685405		chr7:2673738-2685405;chr7:2685406-2686486	chr7:2685405-2685406;chr7:2686486-2686487		1.89	3.45	1.10	NA	NA	NA	0.25	0.00	0.00	0.00	0.21	0.00	0.21	0.00	0.00	0.43	0.00	0.00	NA	1.92	NA	2.00	0.62	0.00	7.14	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.65	0.81	0.25	0.58	0.33	0.385227	0.709013
K	intron_retention		chr22	-	chr22:50719929-50719994				chr22:50719928-50719929;chr22:50719994-50719995		8.28	14.39	8.87	NA	7.69	NA	0.00	0.00	0.65	0.00	1.20	0.00	0.35	0.00	0.81	1.25	0.00	0.00	0.00	4.92	3.92	6.82	5.76	12.90	18.18	10.31	5.58	3.33	6.76	NA	19.18	12.08	14.29	9.18	6.52	6.67	7.32	6.60	-0.72	0.979762	1.000000
K	intron_retention		chr10	-	chr10:102035251-102039880				chr10:102035250-102035251;chr10:102039880-102039881		0.90	2.94	5.41	3.57	4.17	7.14	0.00	0.84	0.81	0.00	0.00	0.00	0.00	0.00	0.94	0.61	0.00	0.00	2.04	2.15	4.00	3.80	1.45	2.04	2.70	3.94	0.88	3.03	1.72	2.22	3.20	3.29	4.84	2.50	3.72	2.04	2.37	1.52	-0.85	0.437331	1.000000
N	jcn_only_AD	HNRNPH3	chr10	+	chr10:70098400-70098896;chr10:70098427-70098896	chr10:70098445-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		77.55	76.19	79.35	76.19	76.74	NA	72.22	73.24	70.71	60.12	67.39	61.02	73.64	69.86	76.09	53.38	67.08	59.55	78.57	83.54	81.82	79.27	80.00	75.64	50.00	86.15	84.42	69.74	80.00	73.86	93.42	87.74	80.95	77.22	75.41	85.11	74.91	80.55	5.63	0.166530	0.657607
N	cassette	STAT6	chr12	-	chr12:57492862-57493549;chr12:57492862-57493778	chr12:57492862-57493076;chr12:57493224-57493549,chr12:57493224-57493778		chr12:57493077-57493223			100.00	100.00	94.21	NA	96.67	NA	100.00	100.00	100.00	98.72	99.12	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	98.04	100.00	95.74	95.92	97.50	100.00	98.61	100.00	100.00	100.00	100.00	100.00	94.05	100.00	95.89	97.03	99.22	100.00	100.00	0.00	0.182327	0.709176
N	jcn_only_AD	VPS18	chr15	+	chr15:41191407-41194813;chr15:41193221-41194813;chr15:41193213-41194813	chr15:41191197-41194813					6.06	5.26	15.15	NA	11.43	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	6.25	0.00	10.34	4.55	12.50	12.00	20.00	50.00	9.09	15.38	0.00	5.41	0.00	10.00	15.38	9.52	5.13	6.12	9.38	2.63	7.57	4.94	0.639273	0.818639
K	intron_retention		chr16	+	chr16:28846015-28846378				chr16:28846014-28846015;chr16:28846378-28846379		0.00	0.00	0.93	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	5.71	3.61	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.476896	1.000000
K	jcn_only_AA	RBCK1	chr20	+	chr20:389424-390473;chr20:389424-390524	chr20:389424-390527		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		6.33	0.00	7.32	NA	0.00	6.52	6.00	0.00	3.97	4.88	0.00	0.00	6.00	3.95	0.00	0.00	0.00	0.00	0.00	0.00	6.06	6.67	4.44	0.00	0.00	3.77	0.00	0.00	0.00	4.10	5.17	0.00	0.00	8.70	8.33	4.35	0.00	3.86	3.86	0.486492	0.744793
N	jcn_only_AA	SLC26A6	chr3	-	chr3:48664541-48665378;chr3:48664486-48665378	chr3:48664489-48665378		chr3:48664486-48664488;chr3:48664489-48664540	chr3:48664485-48664486;chr3:48664488-48664489		32.35	25.64	34.78	NA	38.46	NA	31.25	NA	39.13	NA	42.86	NA	38.46	NA	52.17	NA	38.46	NA	26.67	25.00	40.00	NA	24.00	NA	NA	29.41	32.08	NA	42.86	NA	34.62	27.63	25.93	36.36	58.33	25.00	26.67	30.88	4.21	0.820404	0.927675
K	intron_retention	AD000671.6,U2AF1L4	chr19	-	chr19:36234806-36234970				chr19:36234805-36234806;chr19:36234970-36234971		13.33	1.52	3.70	4.17	1.39	1.92	0.00	NA	5.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	3.70	5.88	2.70	10.00	2.86	5.26	5.56	NA	0.00	6.67	2.86	0.00	0.00	0.00	2.44	3.85	4.35	0.00	1.98	2.94	0.96	0.604644	1.000000
K	intron_retention		chr19	+	chr19:1979093-1979161				chr19:1979092-1979093;chr19:1979161-1979162		22.81	41.18	21.28	NA	0.00	NA	3.23	1.92	3.17	0.00	1.56	0.00	1.75	0.00	5.36	6.67	4.55	0.00	9.09	20.00	9.09	NA	21.28	NA	NA	22.58	25.64	7.69	11.54	NA	37.50	26.53	23.08	18.18	17.86	12.50	9.09	21.29	12.20	0.991266	1.000000
N	alternative_acceptor	DUSP22	chr6	+	chr6:348842-350568;chr6:348842-350377;chr6:348842-350821	chr6:348842-350802		chr6:350378-350568;chr6:350569-350802;chr6:350803-350821	chr6:350568-350569;chr6:350802-350803;chr6:350821-350822		13.89	6.98	9.38	4.17	4.65	2.13	5.26	9.09	7.41	5.71	4.17	2.33	8.57	9.09	7.04	4.00	4.55	3.85	8.57	13.04	11.11	7.69	7.89	6.82	11.54	5.26	9.43	4.55	5.71	7.41	7.14	6.82	8.11	7.14	8.33	7.14	8.34	9.09	0.75	0.402911	0.719111
K	jcn_only_AD	UBE2L3	chr22	+	chr22:21922061-21947149	chr22:21922667-21947149		chr22:21922061-21922666	chr22:21922060-21922061		0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.74	1.57	0.00	0.00	0.00	0.00	0.00	0.67	1.42	0.00	0.00	0.00	2.15	1.41	1.39	1.06	5.10	NA	3.38	1.20	0.00	2.04	1.47	3.85	3.26	8.70	0.00	1.54	2.00	0.00	1.44	1.44	0.978326	0.993037
K	jcn_only_AD	MUTYH,TNFRSF18	chr1	-	chr1:1139349-1139434	chr1:1139349-1139413		chr1:1139414-1139434	chr1:1139434-1139435		100.00	85.00	100.00	87.11	91.51	90.91	NA	NA	NA	84.62	NA	NA	NA	NA	NA	91.43	NA	NA	88.64	100.00	75.00	87.76	88.89	85.71	82.69	85.00	NA	90.00	90.32	85.71	81.25	NA	82.86	82.35	91.11	85.37	83.93	92.50	8.57	0.266921	0.657607
K	cassette	MARK2	chr11	+	chr11:63672516-63676348;chr11:63673587-63676348	chr11:63672516-63675731,chr11:63673587-63675731;chr11:63675777-63676348		chr11:63675732-63675776			76.47	100.00	86.27	NA	NA	NA	96.15	93.62	97.14	94.87	91.67	100.00	90.32	95.45	93.75	97.22	95.24	100.00	NA	87.88	86.67	100.00	76.92	89.47	NA	84.09	83.33	92.86	83.33	100.00	85.00	81.40	86.67	100.00	87.10	91.18	93.23	86.44	-6.80	0.172375	0.709176
N	jcn_only_AA	DERL2	chr17	-	chr17:5384460-5384615;chr17:5383903-5384615	chr17:5384463-5384615					2.44	6.06	1.61	0.00	0.00	NA	4.17	0.00	0.00	3.85	0.00	0.00	4.76	3.45	4.44	0.00	5.13	0.00	10.00	0.00	0.00	3.57	2.56	0.00	NA	0.00	0.00	8.33	5.26	8.82	0.00	4.26	NA	2.38	4.88	4.17	5.41	0.00	-5.41	0.018922	0.537091
N	alternative_acceptor	SYMPK	chr19	-	chr19:46319832-46320055;chr19:46319836-46320055	chr19:46319873-46320055		chr19:46319832-46319835;chr19:46319836-46319872	chr19:46319831-46319832;chr19:46319835-46319836		0.00	6.12	0.00	5.56	6.06	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.52	0.00	2.08	NA	4.76	NA	0.00	NA	0.00	NA	0.00	6.67	0.00	2.38	2.99	NA	0.00	0.00	0.76	0.00	-0.76	0.135989	0.635210
N	jcn_only_AD	EHBP1L1	chr11	+	chr11:65348723-65349009;chr11:65348798-65349009	chr11:65348845-65349009		chr11:65348723-65348797;chr11:65348798-65348844	chr11:65348722-65348723;chr11:65348797-65348798		96.25	100.00	95.14	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.232147	0.657607
N	alternative_acceptor	FES	chr15	+	chr15:91435342-91435936	chr15:91435342-91435783		chr15:91435784-91435936	chr15:91435936-91435937		10.91	8.02	13.33	10.00	8.20	5.00	0.00	0.00	0.00	0.00	0.00	NA	2.15	NA	NA	0.00	2.63	NA	8.14	7.14	11.11	8.33	4.76	NA	17.39	0.00	6.45	7.69	6.06	0.00	5.00	9.09	6.73	11.11	8.70	8.70	7.38	5.00	-2.38	0.467584	0.769369
K	intron_retention	PIAS4	chr19	+	chr19:4037503-4037613				chr19:4037502-4037503;chr19:4037613-4037614		0.00	4.17	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	4.76	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.86	0.00	5.41	0.00	0.00	5.26	0.00	0.00	0.00	0.886163	1.000000
K	cassette	SAP30L	chr5	+	chr5:153830774-153832961	chr5:153830774-153832015;chr5:153832056-153832961		chr5:153832016-153832055			7.50	6.00	10.00	5.88	9.68	8.82	6.25	9.09	11.11	6.06	3.03	0.00	5.56	19.35	9.68	11.11	5.26	7.14	2.27	8.00	9.30	0.00	7.41	13.33	8.57	15.38	5.41	6.67	4.17	9.09	11.54	10.00	5.00	8.33	7.69	5.13	5.78	10.31	4.54	0.021491	0.393979
N	alternative_acceptor	ECH1	chr19	-	chr19:39307726-39307955	chr19:39307770-39307955		chr19:39307726-39307769	chr19:39307725-39307726		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AA	TRAPPC2L	chr16	+	chr16:88926381-88927300;chr16:88926381-88927358;chr16:88926381-88927318	chr16:88926381-88927321		chr16:88927301-88927318;chr16:88927319-88927321;chr16:88927322-88927358	chr16:88927318-88927319;chr16:88927321-88927322;chr16:88927358-88927359	chr16:88926301-88926380;chr16:88927359-88927717	64.86	56.00	63.64	64.57	63.01	61.07	69.39	NA	71.88	65.45	63.19	58.33	65.14	76.92	64.29	65.00	63.64	68.29	57.41	55.56	60.42	62.50	60.28	62.75	62.23	81.82	62.71	65.31	61.54	69.23	53.85	68.66	64.43	61.25	66.67	57.29	63.33	64.86	1.53	0.514864	0.760908
K	intron_retention	MRPL34	chr19	+	chr19:17416767-17416974				chr19:17416766-17416767;chr19:17416974-17416975		4.44	4.55	2.90	NA	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.92	5.26	1.74	10.00	10.87	NA	4.35	3.85	1.41	8.33	1.75	NA	14.71	6.17	7.59	0.00	4.65	0.00	4.45	4.15	-0.30	0.945104	1.000000
N	alternative_donor	PPP1R13L	chr19	-	chr19:54819034-54822726	chr19:54819034-54822683		chr19:54822684-54822726	chr19:54822726-54822727		98.12	100.00	100.00	95.00	100.00	96.74	100.00	97.34	92.68	96.55	100.00	96.91	NA	98.78	100.00	100.00	NA	97.98	97.37	97.69	98.57	NA	100.00	100.00	100.00	98.64	99.26	100.00	100.00	99.39	97.63	97.52	98.53	100.00	94.74	97.77	100.00	97.91	-2.09	0.101467	0.504121
K	cassette	MSRA	chr8	+	chr8:10065412-10159043	chr8:10065412-10102613;chr8:10102734-10159043		chr8:10102614-10102733			100.00	93.75	NA	100.00	100.00	90.48	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.67	NA	100.00	100.00	100.00	NA	76.92	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.367812	0.709176
N	alternative_acceptor	EDEM1	chr3	+	chr3:5252902-5255003	chr3:5252902-5253949		chr3:5253950-5255003	chr3:5255003-5255004		4.55	NA	7.50	6.67	NA	4.76	0.00	1.43	0.92	1.72	0.00	1.35	2.17	1.12	2.26	2.44	1.75	1.15	10.00	4.44	2.86	8.33	0.00	6.25	NA	4.59	2.50	4.55	0.00	2.00	4.00	4.26	0.00	7.41	5.41	5.88	1.08	4.22	3.14	0.906149	0.968985
K	alternative_donor	BSCL2	chr11	-	chr11:62470022-62472939	chr11:62470022-62472772		chr11:62472773-62472939	chr11:62472939-62472940		95.83	83.78	90.24	NA	85.00	NA	98.25	100.00	100.00	100.00	96.97	97.56	96.88	100.00	87.50	100.00	96.00	92.31	76.92	92.11	82.61	100.00	91.84	88.00	NA	94.12	94.74	100.00	94.12	100.00	89.74	87.04	76.00	92.68	90.48	93.22	83.78	94.97	11.19	0.137823	0.550188
K	intron_retention		chr20	-	chr20:33516755-33517203				chr20:33516754-33516755;chr20:33517203-33517204		18.18	11.11	19.35	11.11	16.95	8.00	5.26	3.70	6.25	5.41	5.71	8.33	11.29	12.50	12.50	12.12	7.46	7.69	4.08	20.00	6.58	20.00	11.43	8.33	9.52	5.71	8.47	11.43	9.23	6.52	3.45	15.91	6.98	15.00	12.00	9.26	8.25	9.11	0.86	0.848454	1.000000
K	jcn_only_AD	CD4	chr12	+	chr12:6923467-6923924	chr12:6923630-6923924		chr12:6923467-6923629	chr12:6923466-6923467		0.00	0.00	2.17	0.00	0.00	NA	1.12	1.38	0.00	1.02	1.61	0.72	2.21	0.00	1.35	0.37	1.45	0.43	0.00	2.44	0.00	0.00	1.65	0.00	0.00	1.77	7.29	0.00	0.85	0.00	0.00	3.51	0.00	0.90	2.17	0.56	0.00	0.69	0.69	0.530637	0.755474
N	alternative_acceptor	LSM8	chr7	+	chr7:117824309-117825707	chr7:117824309-117825022		chr7:117825023-117825707	chr7:117825707-117825708		4.88	4.00	5.08	2.17	2.22	2.70	1.27	2.44	1.52	0.00	1.11	0.00	1.11	2.08	3.03	1.15	1.03	0.00	2.44	2.22	1.54	4.65	2.86	4.00	0.00	2.27	2.63	1.49	2.70	2.74	4.35	3.12	0.00	5.56	3.85	7.69	1.19	2.35	1.17	0.081316	0.585944
N	alternative_donor	RAE1	chr20	+	chr20:55949858-55953068;chr20:55951323-55953068	chr20:55950127-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		0.00	9.68	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	1.11	0.00	-1.11	0.153576	0.563271
N	alternative_acceptor	PI4KA	chr22	-	chr22:21067284-21067568;chr22:21067086-21067568	chr22:21067260-21067568		chr22:21067086-21067259;chr22:21067260-21067283	chr22:21067085-21067086;chr22:21067259-21067260		13.33	7.69	11.76	NA	0.00	NA	0.00	0.00	NA	0.00	2.63	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	10.00	0.00	6.06	0.00	NA	0.00	11.76	0.00	0.00	0.00	18.18	10.53	7.69	7.69	6.45	0.00	3.85	0.00	-3.85	0.605752	0.848883
N	jcn_only_AA	SBF1	chr22	-	chr22:50893136-50893242;chr22:50893172-50893242	chr22:50893155-50893242		chr22:50893136-50893154;chr22:50893155-50893171	chr22:50893135-50893136;chr22:50893154-50893155		6.06	0.00	8.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	NA	0.00	0.00	0.00	0.00	0.00	13.33	7.55	NA	0.00	0.00	2.38	0.00	0.00	0.00	0.210250	0.663989
K	intron_retention		chr17	-	chr17:7530545-7530680				chr17:7530544-7530545;chr17:7530680-7530681		13.74	15.08	25.42	11.76	8.87	4.76	1.49	2.88	1.41	0.00	1.54	0.00	5.00	3.90	3.80	3.57	1.82	0.00	8.16	14.89	15.05	4.55	15.53	17.86	6.00	14.37	17.39	16.18	8.85	10.59	23.16	22.83	17.43	11.59	11.54	14.71	7.08	14.05	6.97	0.720285	1.000000
K	cassette	LCMT1	chr16	+	chr16:25180535-25186257	chr16:25180535-25182034;chr16:25182119-25186257		chr16:25182035-25182118			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	EAPP	chr14	-	chr14:35005482-35008760	chr14:35005482-35008461		chr14:35008462-35008760	chr14:35008760-35008761		0.00	0.00	5.26	NA	0.00	NA	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	ANP32A	chr15	-	chr15:69079835-69080108	chr15:69079875-69080108		chr15:69079835-69079874	chr15:69079834-69079835		98.28	87.05	96.21	93.75	92.22	100.00	93.60	92.68	96.30	94.74	95.92	97.50	92.06	92.86	95.10	94.12	94.39	95.24	92.05	95.74	90.38	93.33	90.55	93.75	100.00	93.88	94.59	93.75	93.20	90.00	96.00	93.90	89.11	92.86	93.58	94.23	92.06	94.81	2.75	0.238265	0.663989
K	intron_retention		chr19	-	chr19:51013706-51014373				chr19:51013705-51013706;chr19:51014373-51014374		4.26	10.00	10.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.33	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.583622	1.000000
K	alternative_acceptor	LRRC75A-AS1,PSMB6	chr17	+	chr17:4700865-4701011	chr17:4700865-4700976		chr17:4700977-4701011	chr17:4701011-4701012		94.85	88.89	96.58	92.59	89.50	90.12	92.06	92.59	94.00	91.96	91.08	90.00	100.00	95.59	95.24	94.44	95.43	96.08	87.94	86.67	86.86	88.89	85.94	87.04	100.00	88.75	93.64	89.71	88.70	93.75	89.80	89.55	88.82	91.80	90.00	93.75	90.47	91.19	0.72	0.577080	0.839239
K	alternative_donor	DDX56	chr7	-	chr7:44612037-44612172	chr7:44612037-44612161		chr7:44612162-44612172	chr7:44612172-44612173		9.52	7.14	2.70	NA	5.00	NA	4.00	NA	0.00	3.92	2.38	5.00	2.13	0.00	0.00	1.59	3.64	0.00	NA	12.50	0.00	9.09	6.06	5.41	NA	10.00	16.00	4.55	12.00	5.88	12.50	12.82	9.09	8.11	5.71	4.26	5.57	10.00	4.43	0.275149	0.645608
N	alternative_donor	THAP3	chr1	+	chr1:6692556-6694079	chr1:6693515-6694079		chr1:6692556-6693514	chr1:6692555-6692556		90.00	100.00	92.00	100.00	96.97	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	95.45	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.210184	0.581601
N	cassette	MIA-RAB4B,RAB4B,RAB4B-EGLN2	chr19	+	chr19:41286405-41289825;chr19:41284297-41292569;chr19:41284297-41289825	chr19:41284297-41289682,chr19:41286405-41289682;chr19:41289746-41292569,chr19:41289746-41289825		chr19:41289683-41289745			88.51	95.95	90.00	85.71	91.53	100.00	93.48	93.33	95.00	100.00	91.67	94.44	95.92	97.92	96.83	91.67	83.33	100.00	93.62	90.20	92.86	89.19	88.75	85.71	100.00	94.19	93.51	91.67	94.74	90.57	93.90	86.57	86.05	87.80	92.50	93.22	94.77	93.62	-1.16	0.628525	0.864183
N	cassette	BRD7	chr16	-	chr16:50355950-50359658	chr16:50355950-50357497;chr16:50357610-50359658		chr16:50357498-50357609			100.00	87.18	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.56	96.00	100.00	100.00	100.00	93.33	95.00	81.82	100.00	100.00	100.00	100.00	100.00	0.00	0.336698	0.709176
K	intron_retention		chr17	-	chr17:73836024-73836098				chr17:73836023-73836024;chr17:73836098-73836099		6.67	0.00	8.62	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	2.38	0.00	4.35	0.00	NA	5.45	NA	NA	13.04	0.00	0.00	6.25	9.52	NA	0.00	NA	10.00	6.82	NA	0.00	8.70	0.00	0.00	5.85	5.85	0.027244	1.000000
N	cassette	HARS	chr5	-	chr5:140056702-140057239	chr5:140056702-140056911;chr5:140057006-140057239		chr5:140056912-140057005			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SNRPB	chr20	-	chr20:2443408-2443734				chr20:2443407-2443408;chr20:2443734-2443735		0.59	0.00	1.85	0.35	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.47	2.68	0.89	1.24	0.93	0.00	0.00	0.00	0.57	0.00	0.00	0.00	6.78	3.98	1.31	0.75	1.39	0.47	0.00	0.29	0.29	0.574618	1.000000
N	coord_cassette	MBD4	chr3	-	chr3:129152091-129156562	chr3:129152091-129152692;chr3:129152828-129152904;chr3:129152980-129156562		chr3:129152693-129152827;chr3:129152905-129152979			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.12	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.643829
N	cassette	IMPDH1	chr7	-	chr7:128034654-128035184	chr7:128034654-128034942;chr7:128035088-128035184		chr7:128034943-128035087			93.62	94.74	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.895040	0.967641
K	intron_retention	PCYT1A	chr3	-	chr3:195966607-195968818				chr3:195966606-195966607;chr3:195968818-195968819		5.71	0.00	0.00	6.67	9.09	8.33	0.00	1.56	0.00	0.98	1.64	1.67	0.00	3.28	2.63	3.30	1.06	0.00	9.09	3.12	10.34	9.09	3.70	3.45	0.00	3.51	0.00	8.11	8.00	5.00	6.67	6.67	9.09	5.33	4.84	6.52	0.00	3.39	3.39	0.890785	1.000000
K	intron_retention	DOT1L	chr19	+	chr19:2227127-2229783				chr19:2227126-2227127;chr19:2229783-2229784		13.33	21.05	11.43	14.91	7.79	12.83	0.00	0.00	0.00	3.90	2.63	2.13	5.88	0.00	0.00	2.75	6.67	3.51	16.67	6.67	6.67	16.50	8.05	15.83	NA	15.79	20.00	12.96	10.53	11.29	11.54	5.26	13.33	17.39	12.82	20.71	13.33	9.11	-4.22	0.757897	1.000000
N	alternative_donor	PPP6R2	chr22	+	chr22:50878192-50878389	chr22:50878287-50878389		chr22:50878192-50878286	chr22:50878191-50878192		100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention		chr19	-	chr19:2427323-2427411				chr19:2427322-2427323;chr19:2427411-2427412		0.00	1.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00	2.31	0.00	1.28	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	17.39	0.00	3.73	0.00	0.00	0.00	0.89	0.00	-0.89	0.833242	1.000000
K	intron_retention	C17orf62	chr17	-	chr17:80404573-80407045				chr17:80404572-80404573;chr17:80407045-80407046		29.41	34.29	38.57	NA	NA	NA	18.18	16.67	12.50	NA	NA	NA	27.27	28.57	46.15	NA	NA	NA	NA	28.57	23.08	NA	NA	NA	50.00	37.93	39.58	NA	NA	NA	23.53	30.00	NA	NA	63.64	66.67	30.78	28.57	-2.21	0.982715	1.000000
N	cassette	CLPTM1L	chr5	-	chr5:1323985-1325865	chr5:1323985-1324877;chr5:1324929-1325865		chr5:1324878-1324928			96.08	90.62	95.89	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	92.50	93.88	89.66	100.00	100.00	100.00	98.28	100.00	1.72	0.429240	0.736528
N	alternative_acceptor	ADAM28	chr8	+	chr8:24199271-24200185;chr8:24199271-24200613	chr8:24199271-24200501		chr8:24200186-24200501;chr8:24200502-24200613	chr8:24200501-24200502;chr8:24200613-24200614		12.82	15.91	12.40	NA	5.56	NA	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	7.14	4.11	11.86	2.08	2.54	7.14	NA	11.11	9.68	0.00	2.13	0.00	3.92	6.36	2.78	2.20	1.25	3.03	2.78	4.02	1.24	0.966728	0.991031
K	jcn_only_AA	UBE2D2	chr5	+	chr5:138941401-138979956	chr5:138941401-138941828					0.00	0.00	0.00	12.50	0.00	7.14	0.00	0.00	5.00	7.14	4.44	12.12	8.33	3.45	9.09	9.52	12.31	5.88	0.00	3.57	4.00	6.06	0.00	3.23	0.00	3.70	0.00	0.00	0.00	0.00	0.00	3.23	0.00	5.26	0.00	4.88	0.00	1.73	1.73	0.809926	0.920671
N	jcn_only_AA	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837350		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		5.51	6.90	3.30	2.27	6.06	12.50	4.31	4.18	5.32	2.91	3.06	2.76	4.62	3.74	3.58	2.50	2.59	4.69	4.92	3.61	4.30	4.62	4.63	2.61	0.00	4.20	3.64	5.80	2.87	4.76	6.08	5.16	7.81	4.49	4.21	3.32	4.77	4.19	-0.58	0.866542	0.948413
N	jcn_only_AA	TNFRSF14	chr1	+	chr1:2489908-2491241;chr1:2489908-2491347;chr1:2489908-2490126;chr1:2489908-2490319	chr1:2489908-2491261		chr1:2490127-2490319;chr1:2490320-2491241;chr1:2491242-2491261;chr1:2491262-2491347	chr1:2490319-2490320;chr1:2491241-2491242;chr1:2491261-2491262;chr1:2491347-2491348		97.73	100.00	94.81	96.30	98.64	100.00	99.05	98.41	99.15	95.96	94.17	100.00	96.04	97.40	96.58	96.95	95.96	97.30	100.00	96.55	100.00	92.08	97.01	91.21	100.00	100.00	95.31	94.57	96.09	96.75	97.22	98.13	98.75	90.60	89.17	90.59	99.53	97.56	-1.96	0.203683	0.663989
N	alternative_acceptor	SUPT5H	chr19	+	chr19:39964162-39964586;chr19:39964162-39964602	chr19:39964162-39964717		chr19:39964587-39964602;chr19:39964603-39964717	chr19:39964602-39964603;chr19:39964717-39964718		2.86	0.00	3.61	0.00	1.45	17.65	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.39	0.00	6.90	2.60	5.71	0.00	7.41	2.56	6.67	0.00	3.33	4.82	4.55	3.85	3.39	10.53	2.99	0.00	3.12	3.12	0.105708	0.598353
N	intron_retention		chr11	-	chr11:61732585-61734783				chr11:61732584-61732585;chr11:61734783-61734784		87.43	79.55	90.45	88.95	86.49	100.00	NA	96.00	100.00	100.00	NA	100.00	NA	44.19	91.67	88.24	NA	100.00	81.67	84.38	88.02	92.16	98.61	100.00	83.33	93.70	91.72	100.00	100.00	100.00	80.78	83.57	67.27	73.99	63.91	74.88	80.61	85.91	5.30	0.835760	1.000000
N	jcn_only_AD	EIF4A2	chr3	+	chr3:186506202-186506913;chr3:186506206-186506913	chr3:186506210-186506913		chr3:186506202-186506205;chr3:186506206-186506209	chr3:186506201-186506202;chr3:186506205-186506206		62.96	38.89	66.67	68.18	67.74	69.23	66.67	62.50	36.36	57.14	56.52	50.00	54.17	55.00	45.83	53.06	50.00	50.00	NA	74.19	73.68	62.50	59.15	66.15	NA	61.54	65.79	57.14	44.12	55.56	77.97	75.00	54.55	63.74	65.57	65.85	54.36	62.73	8.37	0.126721	0.657607
N	jcn_only_AD	DNAJC19	chr3	-	chr3:180703785-180704785;chr3:180703785-180704735	chr3:180703785-180704730		chr3:180704731-180704735;chr3:180704736-180704785	chr3:180704735-180704736;chr3:180704785-180704786		95.45	81.08	95.24	NA	83.87	87.50	85.71	NA	93.55	95.65	93.33	94.74	85.71	83.33	95.83	94.74	92.11	95.00	84.62	93.33	87.88	85.71	92.00	70.00	100.00	80.00	90.32	90.00	88.57	95.00	NA	91.30	87.10	85.71	81.82	93.75	85.71	88.33	2.62	0.891267	0.944579
N	alternative_first_exon	RABGAP1L	chr1	+	chr1:174872106-174926593;chr1:174846744-174926593;chr1:174781099-174926593	chr1:174843645-174926593	chr1:174846530-174846743;chr1:174780970-174781098	chr1:174843596-174843644			43.24	0.00	NA	27.27	13.33	51.16	0.00	36.32	38.36	NA	0.00	39.34	20.00	45.85	43.53	29.41	6.25	39.06	NA	45.71	26.92	NA	8.33	35.48	NA	49.41	NA	42.11	9.09	49.68	49.33	NA	0.00	8.33	20.00	36.11	0.00	45.78	45.78	0.001823	0.018720
K	intron_retention		chr2	-	chr2:38975796-38976670				chr2:38975795-38975796;chr2:38976670-38976671		13.33	18.57	23.08	18.18	36.84	NA	9.89	9.72	4.17	4.26	14.57	2.78	13.97	10.34	7.00	3.55	13.38	0.00	23.81	20.73	19.30	26.15	32.56	25.00	65.00	30.39	23.60	23.08	41.24	20.93	19.23	38.18	22.92	28.12	35.38	22.22	20.75	16.28	-4.46	0.536324	1.000000
K	intron_retention		chr12	-	chr12:113831822-113834969				chr12:113831821-113831822;chr12:113834969-113834970		7.73	23.21	12.20	13.33	5.92	NA	0.00	0.56	0.30	0.22	0.00	0.72	0.00	0.00	1.18	0.88	0.00	0.00	17.39	7.05	3.90	4.35	2.85	12.50	20.00	4.13	5.20	1.59	1.11	3.03	7.00	6.42	20.00	2.77	4.84	8.52	18.70	5.56	-13.13	0.463501	1.000000
K	intron_retention	CTD-2561B21.7	chr17	-	chr17:78973343-78973626				chr17:78973342-78973343;chr17:78973626-78973627		100.00	100.00	100.00	96.88	94.12	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	96.00	95.65	100.00	100.00	100.00	91.53	94.74	89.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	86.21	100.00	96.23	100.00	100.00	100.00	98.12	98.00	-0.12	0.915194	1.000000
N	alternative_donor	PRMT2	chr21	+	chr21:48056448-48056807;chr21:48056460-48056807	chr21:48055676-48056807		chr21:48055676-48056447;chr21:48056448-48056459	chr21:48055675-48055676;chr21:48056447-48056448		76.47	53.85	61.11	NA	60.00	NA	61.76	52.17	50.00	58.33	60.71	57.69	54.55	45.83	63.33	45.00	40.00	47.62	NA	75.00	84.21	69.23	68.42	36.36	NA	61.11	53.85	66.67	45.45	55.00	83.33	71.43	76.92	60.00	61.54	50.00	58.16	68.06	9.90	0.645213	0.839864
K	jcn_only_AD	RP11-438J1.1,TATDN2	chr3	+	chr3:10320719-10320904	chr3:10320748-10320904		chr3:10320719-10320747	chr3:10320718-10320719		12.90	0.00	19.23	21.43	23.68	11.11	24.32	22.22	33.33	22.73	24.44	27.27	15.00	10.71	38.46	29.41	26.92	NA	9.09	30.00	41.18	13.33	27.27	30.77	14.29	20.69	34.62	NA	23.33	NA	0.00	18.18	24.14	20.83	19.44	23.08	14.64	16.80	2.15	0.783511	0.897454
N	cassette	GALM	chr2	+	chr2:38917037-38951012;chr2:38917037-38956697	chr2:38917037-38925507;chr2:38925579-38956697,chr2:38925579-38951012		chr2:38925508-38925578			4.31	3.23	NA	NA	4.55	NA	1.30	2.42	6.25	0.00	2.11	0.00	1.61	2.75	0.00	2.63	1.34	2.13	0.00	2.47	0.00	NA	3.64	NA	NA	3.60	0.00	NA	0.00	NA	0.00	0.00	0.00	3.85	1.56	0.00	1.30	2.61	1.31	0.142249	0.709176
K	cassette	JOSD2	chr19	-	chr19:51009830-51013542	chr19:51009830-51010830;chr19:51010957-51013542		chr19:51010831-51010956			59.26	64.06	53.06	50.00	48.10	65.22	90.00	94.12	81.58	78.26	70.97	62.50	91.53	85.94	78.72	82.22	81.25	78.95	66.29	49.30	59.02	44.83	60.42	35.00	68.75	64.15	70.59	76.67	67.27	64.29	60.00	52.11	57.47	56.00	62.50	57.89	67.52	62.08	-5.45	0.655399	0.873653
N	alternative_acceptor	AP2A2,RPS3	chr11	+	chr11:926089-959436	chr11:926089-946224		chr11:946225-959436	chr11:959436-959437		0.00	6.67	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	intron_retention	ARHGAP4,NAA10	chrX	-	chrX:153197569-153197768				chrX:153197568-153197569;chrX:153197768-153197769		6.25	14.29	10.81	11.11	14.08	0.00	0.00	0.00	0.00	0.00	1.03	0.00	2.44	0.00	0.00	0.00	0.87	0.00	7.77	0.00	7.27	7.69	16.67	6.67	18.06	NA	6.67	13.04	17.02	0.00	NA	13.04	7.83	10.00	9.09	0.00	7.80	0.00	-7.80	0.736931	1.000000
K	alternative_acceptor	ARHGAP4	chrX	-	chrX:153178971-153179231	chrX:153179055-153179231		chrX:153178971-153179054	chrX:153178970-153178971		93.48	95.92	100.00	100.00	100.00	NA	100.00	100.00	NA	97.44	100.00	93.75	96.64	100.00	NA	97.87	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	NA	100.00	96.43	100.00	93.10	93.33	98.32	100.00	1.68	0.765497	0.913895
K	intron_retention	CALM3	chr19	+	chr19:47112239-47112381				chr19:47112238-47112239;chr19:47112381-47112382		0.65	0.00	12.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.10	0.62	0.98	0.00	0.32	0.87	0.00	1.28	4.96	0.47	0.00	0.81	1.08	4.55	0.12	0.00	0.00	1.37	0.00	0.64	0.64	0.271512	1.000000
K	intron_retention	IDH3B	chr20	-	chr20:2641476-2641554				chr20:2641475-2641476;chr20:2641554-2641555		0.00	7.94	5.45	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	3.85	1.52	0.00	0.00	0.00	1.82	4.35	3.17	0.00	13.64	3.03	0.00	2.44	1.79	5.26	0.00	0.00	0.00	0.973586	1.000000
K	alternative_donor	NAPRT	chr8	-	chr8:144659910-144660030	chr8:144659910-144659985		chr8:144659986-144660030	chr8:144660030-144660031		100.00	96.77	100.00	NA	100.00	NA	100.00	90.00	100.00	NA	100.00	NA	94.44	NA	100.00	100.00	100.00	NA	90.91	NA	NA	NA	92.31	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	96.00	NA	100.00	NA	96.38	100.00	3.62	0.706541	0.874848
N	cassette	MCM3AP	chr21	-	chr21:47660932-47663378	chr21:47660932-47662715;chr21:47662846-47663378		chr21:47662716-47662845			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.92	100.00	93.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	93.94	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr17	+	chr17:41165212-41165283				chr17:41165211-41165212;chr17:41165283-41165284		3.62	0.00	5.36	4.08	2.56	1.78	0.00	0.42	0.20	0.00	0.00	0.00	0.00	0.48	0.88	0.00	0.00	0.61	0.00	2.43	1.99	5.41	3.03	4.65	0.00	1.68	3.61	6.00	0.00	2.98	4.37	8.54	2.70	13.24	2.94	4.42	0.00	2.06	2.06	0.269822	1.000000
K	alternative_donor	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139917820-139918503	chr5:139917847-139918503		chr5:139917820-139917846	chr5:139917819-139917820		62.50	77.42	69.23	52.94	59.38	NA	76.47	72.73	80.00	69.23	86.67	NA	70.83	84.62	65.22	70.59	61.90	NA	64.71	45.45	60.00	65.22	56.52	55.56	NA	70.37	59.18	72.22	61.11	69.57	40.62	57.14	63.64	58.54	67.44	56.52	70.83	66.44	-4.39	0.326947	0.650093
K	intron_retention	TRAPPC4	chr11	+	chr11:118890028-118890859				chr11:118890027-118890028;chr11:118890859-118890860		0.00	0.00	1.79	0.00	0.00	0.00	0.00	1.72	0.00	0.00	1.41	2.33	1.79	1.85	1.35	0.00	1.39	0.00	0.00	5.08	0.00	0.00	1.82	2.86	0.00	1.45	3.37	0.00	0.00	0.00	3.64	2.22	0.00	3.64	3.51	3.39	0.00	1.79	1.79	0.169524	1.000000
N	cassette	APEH	chr3	+	chr3:49719401-49719978	chr3:49719401-49719780;chr3:49719870-49719978		chr3:49719781-49719869			100.00	100.00	100.00	100.00	93.10	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	87.50	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	93.18	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	NME3	chr16	-	chr16:1820768-1820885;chr16:1820768-1820889	chr16:1820768-1820881		chr16:1820882-1820885;chr16:1820886-1820889	chr16:1820885-1820886;chr16:1820889-1820890		94.12	83.04	90.91	91.89	89.86	92.19	92.86	100.00	85.94	87.50	90.00	94.74	88.14	90.00	88.61	94.59	95.65	NA	88.79	100.00	88.64	100.00	86.54	87.50	94.02	NA	85.37	100.00	90.74	100.00	NA	97.06	84.48	90.00	88.46	91.30	88.47	97.06	8.59	0.048163	0.500386
K	alternative_acceptor	PRPF31	chr19	+	chr19:54628036-54629902	chr19:54628036-54629874		chr19:54629875-54629902	chr19:54629902-54629903		0.00	0.00	2.13	5.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.08	0.00	2.13	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	2.78	3.28	0.00	0.00	3.23	0.00	0.00	0.00	0.187809	0.660713
K	intron_retention	TRPM2	chr21	+	chr21:45819325-45820141				chr21:45819324-45819325;chr21:45820141-45820142		0.00	4.35	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	4.76	3.77	3.57	18.18	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.56	0.00	1.64	5.97	2.17	0.00	-2.17	0.608000	1.000000
K	cassette	TMEM176A	chr7	+	chr7:150500921-150501914	chr7:150500921-150501449;chr7:150501574-150501914		chr7:150501450-150501573			87.93	100.00	89.41	NA	90.00	NA	94.87	94.67	90.83	86.84	88.37	86.67	95.06	91.00	92.43	89.66	87.88	100.00	78.98	81.21	90.06	85.86	79.75	89.16	84.57	87.14	87.72	85.52	90.16	89.25	84.67	86.93	78.95	81.16	92.31	87.10	89.72	87.53	-2.19	0.822946	0.941649
N	cassette	SAP30BP	chr17	+	chr17:73667944-73689519;chr17:73686853-73689519	chr17:73686853-73687473,chr17:73667944-73687473;chr17:73687612-73689519		chr17:73687474-73687611			3.12	2.38	2.63	0.00	1.43	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.96	0.00	0.00	0.00	0.00	0.00	1.25	0.00	2.06	1.89	5.56	0.00	0.86	1.30	1.54	0.00	1.09	1.54	5.56	0.00	3.06	1.37	3.36	0.00	1.10	1.10	0.155334	0.709176
K	alternative_donor	CDC34	chr19	+	chr19:537148-541338	chr19:541253-541338		chr19:537148-541252	chr19:537147-537148		5.08	3.03	6.25	2.22	2.67	1.72	0.00	3.33	2.13	1.85	1.89	0.00	2.13	2.94	3.85	1.67	1.79	0.00	1.72	7.14	2.99	5.00	3.23	10.00	2.33	6.90	4.69	2.63	3.64	3.12	8.82	9.80	3.12	5.77	6.52	6.90	2.23	5.99	3.76	0.009937	0.213240
K	cassette	STAT6	chr12	-	chr12:57501098-57501945;chr12:57501098-57504911	chr12:57501098-57501387;chr12:57501527-57504911,chr12:57501527-57501945		chr12:57501388-57501526			78.18	64.29	65.15	NA	NA	NA	93.83	90.77	87.37	74.47	85.53	76.00	92.78	91.85	86.81	79.66	73.75	79.41	NA	84.78	NA	55.00	60.47	72.50	90.32	82.86	89.58	70.59	78.95	69.23	71.43	78.12	NA	71.05	73.21	69.23	91.55	83.82	-7.73	0.808289	0.936947
N	jcn_only_AD	TBCB	chr19	+	chr19:36613076-36616352;chr19:36612613-36616352;chr19:36612621-36616352	chr19:36612572-36616352		chr19:36612572-36612612;chr19:36612613-36612620;chr19:36612621-36613075	chr19:36612571-36612572;chr19:36612612-36612613;chr19:36612620-36612621		0.00	0.91	4.92	1.82	2.13	2.67	0.00	5.08	2.41	2.44	3.12	1.67	1.98	0.00	2.08	3.16	1.80	2.22	0.00	6.85	3.39	0.00	0.00	0.00	0.00	1.16	2.70	3.57	0.81	1.83	5.00	3.28	2.78	0.00	0.00	3.26	0.46	3.08	2.62	0.161535	0.657607
K	intron_retention	RPL21	chr13	+	chr13:27830472-27830572				chr13:27830471-27830472;chr13:27830572-27830573		3.73	0.59	1.18	0.42	0.33	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.11	0.00	0.00	0.60	2.35	0.95	0.85	0.22	0.55	0.21	1.06	0.51	0.00	0.28	0.25	5.71	3.07	1.02	0.57	0.67	0.22	0.40	1.71	1.31	0.288424	1.000000
N	jcn_only_AD	ASPH	chr8	-	chr8:62596748-62626827	chr8:62596748-62626501		chr8:62626502-62626827	chr8:62626827-62626828		0.00	0.00	2.33	0.00	0.00	NA	0.00	8.51	0.00	0.00	1.45	4.17	0.00	0.00	0.00	0.46	0.00	0.00	0.00	0.00	6.67	2.94	0.00	0.00	NA	0.00	0.00	2.27	0.00	0.00	16.67	0.00	0.00	6.90	5.36	2.86	0.00	0.00	0.00	0.201614	0.657607
N	alternative_donor		chr7	-	chr7:36571951-36579683;chr7:36571951-36575715;chr7:36571951-36579565;chr7:36571951-36572670	chr7:36571951-36579924		chr7:36572671-36575715;chr7:36575716-36579565;chr7:36579566-36579683;chr7:36579684-36579924	chr7:36575715-36575716;chr7:36579565-36579566;chr7:36579683-36579684;chr7:36579924-36579925		96.77	97.98	93.07	100.00	100.00	100.00	99.02	97.06	98.70	100.00	100.00	100.00	97.30	97.44	96.47	100.00	100.00	100.00	98.63	97.73	100.00	100.00	99.26	100.00	94.23	98.44	96.52	100.00	100.00	100.00	100.00	98.25	100.00	99.04	98.97	98.87	98.31	97.59	-0.72	0.961923	0.986950
K	alternative_donor	SMIM4	chr3	+	chr3:52570790-52574439	chr3:52570923-52574439		chr3:52570790-52570922	chr3:52570789-52570790		66.67	56.59	70.00	50.00	52.48	50.00	57.38	NA	NA	68.57	62.50	74.07	55.77	75.00	NA	59.74	67.05	66.67	48.21	69.23	64.81	58.33	47.57	50.00	46.53	NA	62.50	52.94	50.76	65.12	50.00	66.67	44.39	55.56	55.38	54.00	51.99	67.95	15.96	0.076154	0.465315
K	intron_retention		chr2	+	chr2:85824055-85824226				chr2:85824054-85824055;chr2:85824226-85824227		1.54	1.91	2.18	1.64	1.31	1.55	0.37	0.00	0.00	0.00	0.00	0.00	1.13	0.60	1.06	0.62	0.97	0.00	2.39	2.70	1.93	5.17	3.01	6.90	1.81	2.35	2.64	2.65	1.85	3.39	2.08	2.75	0.79	1.74	1.15	3.59	1.47	1.81	0.34	0.889974	1.000000
K	intron_retention		chr14	+	chr14:23299320-23299395				chr14:23299319-23299320;chr14:23299395-23299396		0.45	0.00	2.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	1.48	1.51	3.75	1.71	0.00	2.55	1.23	0.00	1.16	0.00	0.00	5.52	4.20	3.65	0.00	0.00	1.33	0.46	0.84	0.38	0.955706	1.000000
K	jcn_only_AA	C17orf62	chr17	-	chr17:80403757-80404498;chr17:80403837-80404498	chr17:80403833-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		2.61	2.11	5.02	8.33	8.00	9.09	2.19	4.15	4.04	5.13	2.44	6.00	4.61	3.00	3.86	2.17	3.90	0.00	8.57	7.24	3.49	9.09	7.69	5.26	2.86	3.36	2.79	19.05	6.35	6.06	5.26	6.86	4.44	8.11	4.17	5.22	3.65	3.75	0.10	0.911006	0.969303
K	cassette	ZNHIT3	chr17	+	chr17:34842630-34848656	chr17:34842630-34842778;chr17:34842811-34848656		chr17:34842779-34842810			63.33	63.16	52.83	81.82	65.22	NA	92.45	85.71	76.27	80.43	80.00	92.00	88.24	78.57	82.46	90.74	85.29	87.88	66.67	59.26	59.26	80.00	69.70	78.57	NA	58.62	63.27	81.82	62.96	90.91	68.42	62.50	71.43	65.62	72.73	81.25	71.43	65.88	-5.56	0.346958	0.709176
K	alternative_donor	ABCC3	chr17	+	chr17:48735858-48736597	chr17:48735908-48736597		chr17:48735858-48735907	chr17:48735857-48735858		4.17	19.44	8.24	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.22	NA	0.00	0.00	3.12	0.00	0.00	0.00	NA	0.00	4.35	0.00	0.00	8.33	7.14	NA	6.25	NA	NA	7.41	0.00	4.35	6.67	0.00	0.00	2.08	2.08	0.900644	0.978421
N	jcn_only_AD	BIN1	chr2	-	chr2:127821595-127822176;chr2:127821595-127826499;chr2:127821595-127825738;chr2:127821595-127822125;chr2:127821595-127824271	chr2:127821595-127822349					0.00	0.00	NA	NA	1.64	NA	0.00	10.00	NA	29.41	5.26	NA	8.00	NA	NA	22.81	3.81	14.71	6.90	0.00	0.00	15.38	3.06	19.23	0.00	6.25	0.00	15.38	3.33	6.67	4.17	16.67	9.52	21.74	4.65	28.57	3.45	4.17	0.72	0.995919	0.999368
N	alternative_donor	CECR1,PMM1	chr22	-	chr22:17684664-17687960	chr22:17684664-17684743		chr22:17684744-17687960	chr22:17687960-17687961		0.00	0.00	0.00	NA	NA	NA	0.00	0.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.406874	0.672285
K	alternative_first_exon	RHOC,RP11-426L16.10	chr1	-	chr1:113247791-113253081;chr1:113247791-113248226	chr1:113247791-113249699,chr1:113247791-113249454,chr1:113247791-113249353	chr1:113253082-113253233;chr1:113248227-113248355	None			98.41	91.67	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	99.19	98.08	98.61	NA	96.30	97.83	98.48	100.00	96.59	100.00	100.00	100.00	98.41	100.00	99.19	98.28	100.00	100.00	100.00	100.00	97.83	100.00	99.20	-0.80	0.790016	0.857457
N	jcn_only_AA	SNX4	chr3	-	chr3:125188364-125195538	chr3:125189506-125195538		chr3:125188364-125189505	chr3:125188363-125188364		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	3.45	0.00	5.56	2.08	0.00	0.00	0.00	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	jcn_only_AD	SLC39A13	chr11	+	chr11:47436457-47436610	chr11:47436461-47436610		chr11:47436457-47436460	chr11:47436456-47436457		95.83	100.00	90.91	91.30	95.24	87.50	100.00	95.92	92.86	95.65	89.47	100.00	97.92	93.42	87.80	96.49	91.43	NA	92.68	94.29	91.94	93.18	85.96	86.96	100.00	95.83	95.65	90.91	88.10	100.00	94.55	92.31	91.49	91.23	87.69	92.16	98.96	95.19	-3.77	0.266069	0.657607
K	alternative_acceptor	CTBP1	chr4	-	chr4:1209994-1219147	chr4:1215628-1219147		chr4:1209994-1215627	chr4:1209993-1209994		2.27	2.86	3.12	NA	0.00	NA	0.00	0.00	0.00	0.00	1.61	NA	0.95	0.00	1.61	0.00	1.72	0.00	0.00	2.63	0.00	3.57	1.98	0.00	7.14	4.17	1.96	0.00	1.56	0.00	0.00	2.13	0.00	2.86	3.12	3.23	0.47	1.14	0.66	0.823822	0.940125
N	cassette	RNASET2,RP11-514O12.4	chr6	-	chr6:167343280-167352382;chr6:167271748-167352382;chr6:167344607-167352382;chr6:167306510-167352382	chr6:167344607-167347578,chr6:167306510-167347578,chr6:167343280-167347578,chr6:167271748-167347578;chr6:167347625-167352382		chr6:167347579-167347624			89.69	93.47	94.96	97.64	97.37	97.44	98.58	97.50	95.35	99.60	98.65	97.95	100.00	96.59	96.64	99.50	98.72	100.00	93.88	94.59	95.26	96.61	97.47	98.87	93.26	92.96	97.31	98.22	98.55	98.20	92.00	89.84	89.79	97.96	97.84	97.07	93.67	93.78	0.10	0.640519	0.868138
K	alternative_donor	BCL2L2-PABPN1,PABPN1	chr14	+	chr14:23793499-23794455	chr14:23793538-23794455		chr14:23793499-23793537	chr14:23793498-23793499		5.66	5.88	17.46	1.45	0.85	0.00	1.43	0.00	1.41	1.45	1.90	0.00	3.80	0.00	4.35	3.08	2.04	4.55	0.79	10.53	0.85	14.29	7.84	16.67	2.07	11.54	14.04	6.78	6.38	6.12	13.33	14.00	1.06	10.00	10.00	21.74	1.75	8.09	6.34	0.136487	0.549706
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140002115-140002982;chr9:140002115-140002461;chr9:140002115-140002878	chr9:140002115-140002839		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		84.31	86.81	95.83	90.48	87.36	97.30	97.87	100.00	96.97	100.00	97.44	100.00	93.62	94.12	96.55	100.00	94.29	100.00	81.30	92.00	88.16	92.86	82.14	100.00	93.07	92.86	92.31	91.67	95.24	100.00	75.00	92.86	84.29	90.00	82.61	86.36	89.94	92.43	2.49	0.961130	0.990505
N	alternative_acceptor	CFAP36,REL	chr2	+	chr2:55771506-55772042	chr2:55771506-55771810		chr2:55771811-55772042	chr2:55772042-55772043		0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.18	NA	0.00	NA	1.52	0.00	0.00	0.00	0.00	0.00	0.00	1.18	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.242968	0.697467
N	alternative_acceptor		chr19	+	chr19:52298585-52356774;chr19:52298585-52347564;chr19:52298585-52342893;chr19:52298585-52304725;chr19:52298585-52326936	chr19:52298585-52326991		chr19:52304726-52326936;chr19:52326937-52326991;chr19:52326992-52342893;chr19:52342894-52347564;chr19:52347565-52356774	chr19:52326936-52326937;chr19:52326991-52326992;chr19:52342893-52342894;chr19:52347564-52347565;chr19:52356774-52356775		97.73	90.48	100.00	NA	91.07	NA	100.00	98.35	96.15	94.44	99.16	100.00	98.88	98.35	95.24	97.22	98.01	88.24	80.00	100.00	NA	100.00	98.98	NA	NA	98.90	100.00	100.00	98.94	NA	100.00	100.00	72.73	96.77	98.59	100.00	90.48	98.62	8.14	0.120111	0.606219
K	cassette	TRAPPC1	chr17	-	chr17:7834468-7835048	chr17:7834468-7834823;chr17:7834895-7835048		chr17:7834824-7834894			97.04	98.65	95.68	96.10	96.30	93.27	100.00	99.03	100.00	98.58	100.00	98.36	99.57	99.00	100.00	100.00	98.98	99.02	97.37	97.06	97.60	96.97	95.47	98.08	100.00	100.00	96.53	100.00	98.91	99.35	97.09	95.80	95.74	97.78	97.40	97.17	99.11	98.05	-1.06	0.696925	0.888579
N	jcn_only_AA	CCNH	chr5	-	chr5:86690298-86690860;chr5:86690302-86690860	chr5:86688722-86690860		chr5:86688722-86690297;chr5:86690298-86690301	chr5:86688721-86688722;chr5:86690297-86690298		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.00	7.14	0.00	0.00	0.00	0.00	5.88	9.09	1.72	0.00	1.41	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	ATAD1	chr10	-	chr10:89516680-89527429	chr10:89516680-89519457		chr10:89519458-89527429	chr10:89527429-89527430		0.00	0.00	0.00	NA	NA	NA	0.00	NA	4.55	0.00	0.00	0.00	0.00	10.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
N	intron_retention	AP003419.11	chr11	-	chr11:67120549-67120653				chr11:67120548-67120549;chr11:67120653-67120654		100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	87.50	100.00	90.32	NA	90.91	NA	100.00	100.00	90.00	NA	90.48	100.00	78.57	92.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.936495	1.000000
K	intron_retention	DALRD3	chr3	-	chr3:49053141-49053236				chr3:49053140-49053141;chr3:49053236-49053237		73.58	84.27	75.34	91.00	82.29	90.72	70.73	66.67	86.96	85.71	76.32	NA	89.47	72.73	90.00	86.84	89.58	NA	85.80	73.53	76.42	93.10	79.73	80.00	89.03	81.08	75.00	95.12	89.52	77.78	66.67	70.65	89.86	86.15	80.26	75.00	87.41	73.13	-14.28	0.022773	1.000000
K	intron_retention	SORBS3	chr8	+	chr8:22429960-22432179				chr8:22429959-22429960;chr8:22432179-22432180		0.00	0.00	NA	0.00	1.89	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	3.23	0.00	6.45	4.21	0.00	NA	0.00	0.00	0.00	0.00	0.00	1.72	0.00	3.92	0.00	0.00	0.00	0.00	0.893117	1.000000
N	alternative_acceptor	RPL9	chr4	-	chr4:39456600-39458025;chr4:39456550-39458025	chr4:39456565-39458025		chr4:39456550-39456564;chr4:39456565-39456599	chr4:39456549-39456550;chr4:39456564-39456565		87.74	89.70	84.46	87.41	88.33	88.69	93.07	87.78	93.10	97.13	97.00	96.38	93.36	95.89	93.28	93.85	97.35	95.75	94.70	94.96	91.99	96.15	97.72	96.41	90.96	92.11	90.94	96.52	96.76	96.34	90.09	90.56	92.47	90.67	91.30	89.22	92.77	91.10	-1.67	0.572836	0.837400
N	jcn_only_AD	ARSA	chr22	-	chr22:51065835-51066418;chr22:51065835-51066373	chr22:51065835-51065983		chr22:51065984-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		89.74	93.02	84.21	100.00	95.65	NA	95.95	97.47	95.77	90.57	89.71	96.30	96.30	95.00	94.74	100.00	97.78	97.37	100.00	88.57	100.00	100.00	90.48	94.59	100.00	93.06	92.65	97.06	94.23	96.15	90.62	86.27	83.33	96.00	97.22	100.00	96.12	91.84	-4.28	0.438803	0.696909
N	jcn_only_AD	CHKB-CPT1B	chr22	-	chr22:51007511-51007641;chr22:51007511-51007595;chr22:51007511-51007604	chr22:51007511-51007764		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		100.00	79.17	92.86	NA	91.67	93.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	83.33	88.24	75.00	NA	NA	NA	85.29	84.85	82.14	NA	NA	NA	82.14	84.00	85.71	NA	NA	NA	84.31	86.54	2.23	0.268824	0.657607
K	intron_retention		chr10	-	chr10:101993129-101995423				chr10:101993128-101993129;chr10:101995423-101995424		2.94	5.00	6.06	0.00	3.33	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.76	11.11	0.00	5.00	0.00	0.00	3.33	5.88	0.00	2.00	4.55	5.26	5.26	8.70	4.00	2.50	15.38	0.00	3.13	3.13	0.759992	1.000000
N	jcn_only_AA	NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236380;chr1:41235088-41236068	chr1:41235088-41236383		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		0.00	3.64	0.00	11.11	3.33	0.00	7.69	0.00	8.11	5.00	5.19	9.76	8.96	7.69	5.88	7.46	3.26	3.33	0.00	10.26	0.00	4.35	6.49	9.38	17.65	0.00	3.85	14.71	4.82	5.00	7.14	10.00	7.14	3.70	1.67	3.17	7.42	3.57	-3.85	0.307954	0.663989
K	intron_retention	CAPN10	chr2	+	chr2:241537815-241538067				chr2:241537814-241537815;chr2:241538067-241538068		0.00	1.96	0.00	0.00	3.45	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	NA	7.14	0.00	NA	2.86	0.00	4.17	5.00	4.35	0.00	0.00	0.00	0.00	0.00	3.03	0.00	5.26	5.88	3.77	0.00	4.00	0.00	1.96	0.00	-1.96	0.425497	1.000000
N	jcn_only_AD	ELOVL1	chr1	-	chr1:43830132-43830228;chr1:43830132-43830212;chr1:43830132-43830285	chr1:43830132-43830289		chr1:43830213-43830228;chr1:43830229-43830285;chr1:43830286-43830289	chr1:43830228-43830229;chr1:43830285-43830286;chr1:43830289-43830290		0.00	0.00	0.00	4.55	1.33	NA	6.30	0.00	3.96	0.00	6.32	0.00	5.13	3.53	0.00	5.56	9.17	11.54	0.00	0.00	0.00	1.79	4.43	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	4.35	13.16	2.02	0.00	0.00	2.56	0.00	-2.56	0.168256	0.657607
K	intron_retention	NMT1	chr17	+	chr17:43183246-43186045				chr17:43183245-43183246;chr17:43186045-43186046		100.00	100.00	100.00	86.36	100.00	100.00	100.00	86.36	93.55	94.12	93.55	92.86	100.00	95.65	100.00	100.00	93.75	NA	91.67	93.10	96.49	86.67	94.87	NA	100.00	100.00	91.67	100.00	100.00	82.61	84.21	90.48	91.89	88.00	91.18	100.00	100.00	94.38	-5.62	0.453708	1.000000
K	cassette	SNRNP70	chr19	+	chr19:49604729-49607890	chr19:49604729-49605370;chr19:49605443-49607890		chr19:49605371-49605442			5.88	9.09	15.52	4.62	4.90	2.63	2.00	2.08	1.15	1.87	1.71	0.00	1.53	2.50	4.00	3.15	2.21	1.32	3.28	9.52	4.42	19.67	18.27	17.65	6.80	4.41	6.38	16.18	9.26	5.13	11.11	14.29	4.08	20.88	18.18	16.67	3.68	5.14	1.46	0.469599	0.767522
N	cassette	RUSC1	chr1	+	chr1:155296924-155300193	chr1:155296924-155297940;chr1:155298067-155300193		chr1:155297941-155298066			100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	97.22	100.00	94.12	100.00	NA	100.00	100.00	NA	86.67	100.00	NA	100.00	NA	NA	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	UBE2M	chr19	-	chr19:59067747-59068053				chr19:59067746-59067747;chr19:59068053-59068054		2.94	2.26	3.78	0.00	2.73	1.82	0.00	0.00	1.49	0.47	0.40	0.00	0.79	0.00	0.00	0.00	0.51	0.00	0.79	1.45	1.24	3.26	1.09	0.00	4.40	1.71	2.95	0.83	1.05	2.50	5.80	3.49	1.32	1.31	2.05	1.65	1.06	1.58	0.52	0.983746	1.000000
N	coord_cassette	PLXNB2	chr22	-	chr22:50727572-50745981	chr22:50727572-50727945;chr22:50729027-50733147;chr22:50733208-50745981		chr22:50727946-50729026;chr22:50733148-50733207			100.00	100.00	100.00	NA	NA	NA	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	NA	100.00	97.62	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.210615	0.643829
K	alternative_acceptor	DBNL,ZNF655	chr7	+	chr7:44097880-44098030	chr7:44097880-44098027		chr7:44098028-44098030	chr7:44098030-44098031		13.56	9.23	21.15	15.79	16.67	16.67	13.25	16.33	17.60	16.67	16.20	18.18	12.56	16.18	16.23	15.00	16.92	15.17	10.34	19.48	14.52	12.50	14.47	23.08	11.76	14.74	11.76	13.24	15.96	17.71	12.73	20.83	12.90	15.56	13.85	13.10	12.16	15.46	3.30	0.010470	0.472842
K	cassette	BABAM1	chr19	+	chr19:17379901-17384712	chr19:17379901-17382405;chr19:17382465-17384712		chr19:17382406-17382464			100.00	100.00	96.30	100.00	100.00	100.00	100.00	96.88	97.30	97.92	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	ARHGAP30	chr1	-	chr1:161019480-161022075	chr1:161019480-161021103;chr1:161021506-161022075		chr1:161021104-161021505			95.58	100.00	93.87	NA	100.00	NA	98.67	100.00	96.63	100.00	99.04	NA	98.17	98.96	94.92	100.00	100.00	NA	100.00	99.04	93.55	100.00	98.21	NA	100.00	100.00	96.75	100.00	96.43	NA	100.00	98.80	100.00	100.00	93.68	100.00	100.00	99.52	-0.48	0.506383	0.788365
N	jcn_only_AA	ARFGAP1,RBCK1	chr20	+	chr20:409234-409609;chr20:409234-409594;chr20:409234-409606	chr20:409234-409571		chr20:409572-409594;chr20:409595-409606;chr20:409607-409609	chr20:409594-409595;chr20:409606-409607;chr20:409609-409610		0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.67	0.00	0.00	10.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.494518	0.750025
K	cassette	FIBP	chr11	-	chr11:65653135-65655070	chr11:65653135-65653792;chr11:65653894-65655070		chr11:65653793-65653893			88.24	100.00	88.00	84.62	100.00	NA	100.00	94.74	95.65	100.00	100.00	100.00	96.92	97.44	90.38	100.00	96.49	100.00	97.62	93.02	90.70	100.00	91.38	100.00	100.00	93.75	92.68	92.86	100.00	91.30	92.50	86.96	89.09	95.83	93.94	94.44	98.81	93.38	-5.43	0.092745	0.658231
K	cassette	ADD1	chr4	+	chr4:2927840-2929897	chr4:2927840-2928368;chr4:2928403-2929897		chr4:2928369-2928402			4.48	0.00	3.53	NA	0.00	NA	2.61	6.15	2.04	4.48	5.26	8.77	5.05	8.74	3.03	4.26	4.59	7.84	NA	3.23	0.00	2.56	4.05	6.25	0.00	5.95	2.74	0.00	1.85	3.12	5.56	1.61	0.00	3.28	2.74	3.23	0.00	5.75	5.75	0.011611	0.322992
K	mutually_exclusive	CNIH4	chr1	+	chr1:224544696-224551810,chr1:224552158-224553580	chr1:224544696-224548196,chr1:224548266-224553580	chr1:224551811-224552157	chr1:224548197-224548265			95.24	100.00	96.47	100.00	100.00	NA	97.50	97.50	97.10	100.00	100.00	100.00	100.00	99.21	95.71	98.67	96.88	100.00	100.00	97.78	100.00	97.14	97.62	96.55	NA	95.19	95.56	100.00	100.00	100.00	98.36	95.16	100.00	93.18	96.15	92.31	100.00	97.64	-2.36	0.024276	0.104040
K	alternative_acceptor	B3GAT3	chr11	-	chr11:62383272-62383977;chr11:62383713-62383977	chr11:62383709-62383977		chr11:62383272-62383708;chr11:62383709-62383712	chr11:62383271-62383272;chr11:62383708-62383709		0.00	1.48	0.00	2.17	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	1.59	0.00	2.91	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	3.23	2.56	9.68	0.42	0.00	-0.42	0.126161	0.614762
N	alternative_acceptor	SCN1B	chr19	+	chr19:35524644-35530020;chr19:35524644-35528066;chr19:35524644-35525948	chr19:35524644-35530101		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	4.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.178234	0.660713
N	alternative_acceptor	ADA	chr20	-	chr20:43251554-43251647;chr20:43251550-43251647	chr20:43251572-43251647		chr20:43251550-43251553;chr20:43251554-43251571	chr20:43251549-43251550;chr20:43251553-43251554		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.68	100.00	98.84	NA	100.00	100.00	100.00	100.00	100.00	94.66	100.00	100.00	96.97	100.00	99.02	100.00	100.00	0.00	0.363217	0.709013
N	cassette	TRNAU1AP	chr1	+	chr1:28891347-28897687;chr1:28891347-28904011	chr1:28891347-28893805;chr1:28893926-28904011,chr1:28893926-28897687		chr1:28893806-28893925			100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	94.44	100.00	100.00	92.31	100.00	100.00	100.00	100.00	90.00	96.15	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	98.08	100.00	1.92	0.101838	0.683336
K	alternative_last_exon	EMC2	chr8	+	chr8:109482351-109483082;chr8:109482351-109498740	chr8:109482351-109488110	chr8:109498741-109499141	chr8:109488111-109488192			95.83	92.31	97.62	NA	94.44	NA	100.00	95.00	100.00	97.06	97.73	92.00	96.67	95.65	96.23	96.30	100.00	95.83	NA	95.12	95.24	96.67	100.00	96.97	NA	100.00	97.62	100.00	100.00	94.44	94.44	98.31	80.00	100.00	96.97	100.00	94.49	95.39	0.89	0.456382	0.608509
K	alternative_acceptor	AC005943.2,MBD3	chr19	-	chr19:1578534-1581090	chr19:1578538-1581090		chr19:1578534-1578537	chr19:1578533-1578534		100.00	100.00	91.30	NA	96.88	NA	100.00	100.00	100.00	97.22	96.23	100.00	98.28	100.00	100.00	93.18	97.10	100.00	100.00	100.00	100.00	100.00	95.65	NA	100.00	100.00	96.67	91.67	100.00	83.33	95.24	100.00	96.00	95.65	91.43	100.00	100.00	100.00	0.00	0.880763	0.960122
K	cassette	AKAP8L	chr19	-	chr19:15508667-15510112	chr19:15508667-15509440;chr19:15509578-15510112		chr19:15509441-15509577			10.34	4.60	8.45	6.25	5.97	19.05	0.00	4.35	3.03	10.53	3.57	36.36	10.00	3.23	4.65	8.00	15.38	NA	9.43	10.00	6.85	16.00	10.00	32.14	1.54	11.36	7.89	13.79	10.87	22.41	10.00	9.89	5.63	18.37	13.64	22.95	5.12	10.00	4.88	0.197508	0.709176
N	cassette	ZNF688	chr16	-	chr16:30581758-30582754	chr16:30581758-30582330;chr16:30582445-30582754		chr16:30582331-30582444			80.00	100.00	83.33	NA	89.47	100.00	100.00	88.24	100.00	NA	NA	NA	84.62	82.35	92.86	NA	100.00	NA	86.21	100.00	78.26	NA	92.31	NA	100.00	88.24	85.71	NA	92.86	84.62	75.00	74.07	87.50	NA	100.00	87.50	93.75	85.29	-8.46	0.147850	0.709176
K	intron_retention	SF3B2	chr11	+	chr11:65825877-65826300				chr11:65825876-65825877;chr11:65826300-65826301		2.78	6.52	5.30	0.00	0.00	NA	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.61	0.00	0.93	0.00	0.00	3.30	2.08	4.88	3.37	3.64	0.00	2.56	2.75	0.00	1.54	0.00	5.33	4.46	4.76	2.99	3.57	4.30	0.61	2.67	2.05	0.402130	1.000000
K	cassette	C11orf73	chr11	+	chr11:86017525-86048420	chr11:86017525-86037554;chr11:86037719-86048420		chr11:86037555-86037718			0.00	0.00	2.86	0.00	2.86	0.00	0.00	12.50	7.69	0.00	6.67	0.00	0.00	7.69	2.70	0.00	0.00	0.00	3.23	0.00	2.56	0.00	10.81	6.25	0.00	8.33	2.50	7.69	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	3.85	0.119506	0.709176
K	cassette	LSM2	chr6	-	chr6:31765827-31773851	chr6:31765827-31766253;chr6:31766285-31773851		chr6:31766254-31766284			100.00	96.97	94.12	NA	96.97	NA	97.83	100.00	97.14	100.00	100.00	100.00	100.00	100.00	96.97	92.86	90.70	100.00	96.77	100.00	96.00	100.00	100.00	94.12	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	93.94	100.00	95.24	100.00	97.40	100.00	2.60	0.048749	0.561734
K	cassette	CHURC1,CHURC1-FNTB	chr14	+	chr14:65390845-65398855;chr14:65390845-65470966;chr14:65390845-65410016	chr14:65390845-65392724;chr14:65392799-65470966,chr14:65392799-65410016,chr14:65392799-65398855		chr14:65392725-65392798			78.57	92.31	91.89	87.50	82.50	83.05	77.42	75.76	79.55	83.33	74.36	76.67	87.88	81.25	80.49	72.73	83.78	75.00	90.48	72.00	73.68	71.43	91.30	74.07	81.25	85.71	74.07	71.43	76.92	80.56	72.41	82.50	83.33	81.82	84.62	84.85	85.60	77.16	-8.44	0.034458	0.463395
K	jcn_only_AD	PARK7	chr1	+	chr1:8021796-8022822	chr1:8021854-8022822		chr1:8021796-8021853	chr1:8021795-8021796		73.68	69.35	55.17	55.17	58.73	56.52	44.86	52.78	47.86	36.36	38.41	34.69	52.63	62.50	57.02	44.76	46.56	43.30	52.54	43.24	43.01	49.32	55.00	60.38	60.00	59.09	64.63	49.21	48.28	48.48	67.65	55.84	61.02	60.32	57.61	55.06	56.31	60.80	4.48	0.595474	0.799605
N	jcn_only_AA	UBAC1	chr9	-	chr9:138838218-138839643	chr9:138838902-138839643		chr9:138838218-138838901	chr9:138838217-138838218		1.89	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.75	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.251413	0.663989
K	jcn_only_AA	ACADM	chr1	+	chr1:76227056-76228977	chr1:76227056-76228376		chr1:76228377-76228977	chr1:76228977-76228978		NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	78.57	90.91	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.623797	0.833225
N	alternative_acceptor	OXA1L	chr14	+	chr14:23240558-23240656;chr14:23240558-23240642	chr14:23240558-23240692		chr14:23240643-23240656;chr14:23240657-23240692	chr14:23240656-23240657;chr14:23240692-23240693		0.00	6.11	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.51	7.14	2.90	0.00	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.04	6.17	9.29	0.00	0.00	2.04	3.06	0.00	-3.06	0.835269	0.940678
K	cassette	GLS	chr2	+	chr2:191819387-191827555	chr2:191819387-191819480;chr2:191819545-191827555		chr2:191819481-191819544			100.00	100.00	100.00	96.97	96.55	100.00	91.30	90.00	100.00	90.00	93.75	86.67	95.00	92.31	96.15	NA	NA	75.00	100.00	100.00	100.00	97.06	100.00	89.19	100.00	100.00	100.00	100.00	100.00	90.91	95.83	93.02	100.00	96.88	97.87	94.23	100.00	97.91	-2.09	0.576615	0.835263
K	intron_retention	HK3	chr5	-	chr5:176318193-176318388				chr5:176318192-176318193;chr5:176318388-176318389		3.75	17.86	8.57	NA	0.00	NA	0.55	1.10	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	4.08	0.00	NA	6.67	0.00	0.00	2.94	11.63	0.00	6.52	0.00	0.00	4.35	0.00	3.45	3.92	2.08	0.28	2.02	1.75	0.858796	1.000000
N	jcn_only_AD	MYL6	chr12	+	chr12:56554112-56555170;chr12:56554455-56555170	chr12:56554105-56555170					93.00	93.90	94.25	93.79	94.42	94.12	90.21	83.38	92.42	90.76	91.98	90.98	86.48	83.98	91.10	88.84	90.56	90.01	93.96	91.70	94.25	93.61	95.17	93.89	93.19	84.41	93.55	91.98	92.45	91.88	92.84	94.95	94.56	94.41	95.17	93.78	93.55	88.06	-5.49	0.134115	0.657607
K	alternative_last_exon	SON	chr21	+	chr21:34932082-34939462	chr21:34932082-34932182	chr21:34939463-34939573	chr21:34932183-34932973			31.34	67.86	18.29	NA	60.00	NA	25.00	29.63	20.69	24.39	24.00	36.00	22.95	32.56	22.22	26.09	24.56	23.08	100.00	30.00	60.00	15.69	19.70	15.87	NA	26.56	20.73	29.73	31.25	51.85	40.00	31.25	81.25	17.11	15.71	15.85	67.86	30.67	-37.19	0.145209	0.353058
N	jcn_only_AA	MKLN1	chr7	+	chr7:131163437-131172365;chr7:131163437-131164911	chr7:131163437-131172441		chr7:131164912-131172365;chr7:131172366-131172441	chr7:131172365-131172366;chr7:131172441-131172442		0.00	26.92	13.64	0.00	9.09	30.00	12.50	15.15	0.00	6.67	3.03	5.00	0.00	0.00	3.33	6.25	2.86	0.00	0.00	11.76	0.00	NA	13.33	NA	NA	6.90	16.67	0.00	17.65	4.76	12.12	6.45	10.53	23.08	0.00	8.33	10.53	9.33	-1.20	0.692151	0.864632
N	alternative_acceptor	MED15	chr22	+	chr22:20939303-20939387;chr22:20939303-20939395	chr22:20939303-20939417		chr22:20939388-20939395;chr22:20939396-20939417	chr22:20939395-20939396;chr22:20939417-20939418		2.78	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.519577	0.805153
N	jcn_only_AA	KIAA0196	chr8	-	chr8:126044824-126049478;chr8:126048463-126049478	chr8:126044637-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		94.29	100.00	100.00	NA	95.83	NA	100.00	100.00	95.45	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.45	NA	100.00	96.00	100.00	100.00	98.46	NA	NA	100.00	97.73	100.00	100.00	NA	95.24	100.00	100.00	94.59	96.23	100.00	100.00	98.00	-2.00	0.080049	0.663989
N	alternative_donor	SCCPDH	chr1	+	chr1:246927606-246929359;chr1:246927647-246929359	chr1:246927660-246929359		chr1:246927606-246927646;chr1:246927647-246927659	chr1:246927605-246927606;chr1:246927646-246927647		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
K	cassette	NARF	chr17	+	chr17:80436795-80438957	chr17:80436795-80438282;chr17:80438421-80438957		chr17:80438283-80438420			5.49	0.00	6.67	NA	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	NA	0.00	2.22	1.64	NA	4.35	4.55	0.00	13.33	4.23	NA	0.00	3.70	3.70	2.56	3.03	0.00	5.88	5.88	0.00	2.96	2.96	0.138809	0.709176
N	cassette	MFF	chr2	+	chr2:228205097-228217229;chr2:228207536-228220392;chr2:228207536-228217229;chr2:228205097-228220392	chr2:228205097-228211941,chr2:228207536-228211941;chr2:228212101-228220392,chr2:228212101-228217229		chr2:228211942-228212100			25.93	15.79	29.49	27.78	17.02	20.83	34.88	48.57	33.33	21.05	22.92	25.00	21.43	41.51	30.91	19.05	19.57	23.08	11.63	20.45	29.27	20.00	21.28	18.75	17.65	25.00	29.68	28.57	31.48	28.00	17.24	21.52	17.65	20.83	25.00	22.22	17.65	25.46	7.82	0.135879	0.709176
K	jcn_only_AA	BRD2	chr6	+	chr6:32944714-32945193;chr6:32944714-32945218	chr6:32944714-32945036		chr6:32945037-32945193;chr6:32945194-32945218	chr6:32945193-32945194;chr6:32945218-32945219		1.90	0.00	0.00	0.00	0.00	NA	2.70	1.54	2.65	1.73	5.51	0.87	1.96	2.86	2.70	2.63	2.19	1.90	NA	0.63	0.00	0.00	1.28	1.02	NA	0.00	0.81	0.00	3.23	0.00	0.00	0.00	0.00	0.68	0.00	0.58	0.98	1.08	0.10	0.990831	0.997790
N	alternative_acceptor	MOB2	chr11	-	chr11:1491715-1492524	chr11:1491719-1492524		chr11:1491715-1491718	chr11:1491714-1491715		62.50	64.10	89.47	80.56	90.00	87.50	88.24	100.00	86.96	90.91	100.00	84.21	100.00	100.00	100.00	100.00	81.25	100.00	84.62	76.19	78.57	85.19	100.00	86.11	100.00	73.08	78.26	86.36	77.78	85.71	76.67	82.76	81.82	80.00	75.00	85.71	86.43	76.43	-10.00	0.555802	0.826636
N	alternative_acceptor	DNAJB12	chr10	-	chr10:74098012-74100546	chr10:74098070-74100546		chr10:74098012-74098069	chr10:74098011-74098012		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	cassette	GBA	chr1	-	chr1:155208442-155209676	chr1:155208442-155209406;chr1:155209554-155209676		chr1:155209407-155209553			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.55	99.17	99.42	100.00	98.71	100.00	100.00	99.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	98.08	98.61	95.00	98.55	98.89	100.00	100.00	99.59	-0.41	0.605320	0.853149
K	intron_retention		chr1	+	chr1:151373322-151373714				chr1:151373321-151373322;chr1:151373714-151373715		10.14	5.98	14.52	9.26	8.64	7.19	0.86	1.69	1.47	0.84	1.80	0.57	1.23	1.98	2.80	1.75	1.33	1.14	7.20	12.33	7.35	12.99	11.02	14.94	5.50	9.56	10.83	6.09	7.55	7.10	17.04	17.70	7.44	11.33	10.32	11.39	5.74	9.85	4.11	0.436489	1.000000
K	intron_retention		chr1	-	chr1:173834421-173834647				chr1:173834420-173834421;chr1:173834647-173834648		0.00	4.42	9.68	5.36	7.04	2.13	1.52	0.00	0.00	9.38	2.00	0.00	9.09	NA	0.00	16.67	6.45	NA	1.43	30.00	4.35	11.11	8.06	9.09	4.00	NA	10.00	12.12	8.20	10.00	16.00	16.13	2.47	11.48	15.62	6.52	3.24	8.00	4.76	0.618688	1.000000
N	cassette	STAC3	chr12	-	chr12:57638009-57638698	chr12:57638009-57638097;chr12:57638150-57638698		chr12:57638098-57638149			94.87	95.59	100.00	100.00	88.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	86.57	92.68	98.15	91.67	100.00	100.00	100.00	96.97	100.00	NA	100.00	100.00	83.64	81.82	89.06	100.00	100.00	100.00	97.80	95.92	-1.88	0.887304	0.966627
K	intron_retention	PPP1R15A	chr19	+	chr19:49378156-49378870				chr19:49378155-49378156;chr19:49378870-49378871		7.52	14.56	7.22	3.65	2.03	2.81	0.00	0.61	0.00	0.52	0.00	1.64	2.27	1.02	1.15	1.12	1.05	0.52	8.65	7.36	7.26	3.56	5.70	3.61	7.00	5.76	5.88	2.24	1.83	2.87	13.83	13.11	17.61	5.38	7.30	6.35	7.83	6.56	-1.26	0.732043	1.000000
N	alternative_donor	NUDC	chr1	+	chr1:27272178-27272620	chr1:27272526-27272620		chr1:27272178-27272525	chr1:27272177-27272178		0.00	1.07	1.28	1.77	1.11	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.71	2.27	0.59	1.85	0.96	3.23	0.71	0.00	1.39	1.67	0.85	1.12	7.14	2.70	1.99	1.85	2.35	3.17	0.71	0.00	-0.71	0.524845	0.772559
K	intron_retention	STXBP2	chr19	+	chr19:7712398-7712610				chr19:7712397-7712398;chr19:7712610-7712611		5.69	3.49	9.04	12.17	8.99	8.33	0.00	1.48	0.00	2.60	1.77	0.00	0.95	3.08	3.23	1.25	0.72	0.00	4.88	5.50	6.92	8.43	8.17	11.69	4.92	4.81	6.82	9.09	10.46	12.61	6.06	6.15	5.53	6.42	8.03	5.88	4.19	5.15	0.97	0.605533	1.000000
K	alternative_acceptor	SARAF	chr8	-	chr8:29923584-29924292	chr8:29923656-29924292		chr8:29923584-29923655	chr8:29923583-29923584		83.28	79.65	84.73	87.50	83.94	76.47	84.85	85.77	82.06	79.80	79.42	78.85	84.21	85.08	82.67	85.80	82.86	79.19	81.54	88.41	89.52	88.49	82.27	85.64	80.00	83.55	84.66	82.80	85.92	83.87	85.54	89.51	85.39	89.47	87.79	87.21	82.88	85.31	2.44	0.066530	0.584083
K	alternative_donor	ACO2	chr22	+	chr22:41911922-41913530	chr22:41911997-41913530		chr22:41911922-41911996	chr22:41911921-41911922		0.00	0.00	0.00	0.00	4.35	NA	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.185219	0.563271
N	cassette	IL13RA1	chrX	+	chrX:117900940-117938894;chrX:117900940-117925724	chrX:117900940-117910389;chrX:117910475-117925724,chrX:117910475-117938894		chrX:117910390-117910474			98.73	100.00	99.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	97.56	100.00	100.00	100.00	97.65	100.00	100.00	100.00	100.00	97.32	100.00	100.00	95.24	100.00	100.00	100.00	0.00	0.431722	0.738486
K	cassette	CHTOP	chr1	+	chr1:153610925-153617539	chr1:153610925-153614721;chr1:153614906-153617539		chr1:153614722-153614905			93.33	81.82	86.67	100.00	100.00	86.67	100.00	95.00	95.83	95.45	96.00	90.91	100.00	100.00	100.00	95.83	100.00	100.00	91.67	89.29	92.59	88.89	100.00	89.47	NA	85.00	96.30	100.00	100.00	100.00	86.96	94.74	79.17	90.00	100.00	100.00	91.67	91.31	-0.36	0.836597	0.945387
N	jcn_only_AD		chr17	-	chr17:62964500-62967040;chr17:62964500-62968435	chr17:62964500-62968651		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	NA	90.00	NA	100.00	NA	100.00	NA	100.00	NA	92.98	NA	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.21	95.35	100.00	92.50	93.75	100.00	100.00	100.00	0.00	0.568080	0.782177
N	alternative_donor		chr7	-	chr7:128036750-128037001	chr7:128036750-128036985		chr7:128036986-128037001	chr7:128037001-128037002		100.00	100.00	94.12	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	91.67	100.00	NA	100.00	NA	100.00	100.00	95.56	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
K	alternative_acceptor	RBCK1	chr20	+	chr20:389424-390473;chr20:389424-390524	chr20:389424-390527		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		11.11	0.00	14.29	NA	0.00	11.54	10.34	0.00	7.69	9.52	0.00	0.00	10.71	7.45	0.00	0.00	0.00	0.00	NA	0.00	11.76	NA	9.09	0.00	0.00	7.14	0.00	0.00	0.00	7.46	9.09	0.00	NA	12.50	15.38	8.00	5.17	7.29	2.12	0.886987	0.961297
K	intron_retention		chr20	+	chr20:44576078-44576162				chr20:44576077-44576078;chr20:44576162-44576163		2.04	0.00	1.85	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	1.82	0.00	5.36	0.00	7.69	0.00	0.00	0.00	3.12	3.33	5.45	4.82	3.57	0.00	0.00	4.88	0.94	0.00	-0.94	0.881753	1.000000
K	cassette	CLCN7	chr16	-	chr16:1511676-1524834	chr16:1511676-1515267;chr16:1515340-1524834		chr16:1515268-1515339			92.31	100.00	97.96	NA	NA	NA	98.81	100.00	100.00	100.00	98.82	95.45	97.44	100.00	98.46	100.00	100.00	100.00	92.31	100.00	81.82	100.00	100.00	95.83	100.00	96.97	100.00	100.00	100.00	NA	88.24	100.00	100.00	100.00	95.83	100.00	99.41	98.48	-0.92	0.458131	0.757194
K	intron_retention		chr18	-	chr18:5393478-5394675				chr18:5393477-5393478;chr18:5394675-5394676		4.38	4.08	5.58	3.39	1.01	3.39	0.00	1.21	1.26	0.00	0.29	0.39	1.56	1.26	2.49	1.46	0.27	0.81	0.00	3.02	2.59	4.43	2.02	6.30	NA	3.55	5.08	3.55	2.16	2.17	1.59	3.15	0.00	5.51	5.76	4.20	0.00	2.31	2.31	0.292737	1.000000
N	alternative_acceptor	UBQLN4	chr1	-	chr1:156003106-156011275	chr1:156006922-156011275		chr1:156003106-156006921	chr1:156003105-156003106		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	U2AF2	chr19	+	chr19:56172556-56173867				chr19:56172555-56172556;chr19:56173867-56173868		1.75	4.76	0.93	0.00	0.00	NA	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.00	3.45	0.00	1.61	1.03	5.56	0.00	0.00	4.17	2.33	1.75	4.76	4.76	4.59	4.76	6.41	2.20	4.05	0.00	0.88	0.88	0.985149	1.000000
N	cassette	DNAJB2	chr2	+	chr2:220147652-220148140	chr2:220147652-220147854;chr2:220147958-220148140		chr2:220147855-220147957			100.00	100.00	93.94	100.00	100.00	NA	100.00	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	95.65	100.00	100.00	94.59	93.44	100.00	100.00	NA	88.64	100.00	85.00	97.14	100.00	100.00	100.00	100.00	0.00	0.927508	0.982136
N	jcn_only_AD	ATG7	chr3	+	chr3:11383754-11389350	chr3:11388238-11389350		chr3:11383754-11388237	chr3:11383753-11383754		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	CHD4	chr12	-	chr12:6692542-6696549	chr12:6692545-6696549		chr12:6692542-6692544	chr12:6692541-6692542		86.67	100.00	95.40	NA	NA	NA	93.98	94.03	93.33	91.76	92.13	93.10	93.90	95.74	91.89	91.76	89.40	92.42	NA	91.07	100.00	87.10	92.86	91.11	76.92	97.50	92.42	100.00	90.91	90.48	86.67	93.22	NA	92.68	92.54	93.94	93.94	92.55	-1.39	0.895250	0.963638
K	alternative_first_exon	TSPAN4	chr11	+	chr11:843046-847200,chr11:845055-847200,chr11:843670-847200;chr11:843051-847200;chr11:844588-847200;chr11:844187-847200	chr11:842916-847200	chr11:842941-843050;chr11:844446-844587;chr11:844081-844186	chr11:842808-842915			0.00	7.23	0.00	8.33	8.93	8.33	10.53	0.00	1.82	12.10	13.33	14.18	17.39	4.35	8.82	19.66	16.30	22.34	12.73	6.67	3.12	7.55	9.52	6.15	6.67	0.00	0.00	3.39	9.02	10.13	13.04	0.00	10.34	8.33	9.09	9.48	10.43	2.17	-8.26	0.030660	0.125944
K	intron_retention	DHX58	chr17	-	chr17:40254331-40255625				chr17:40254330-40254331;chr17:40255625-40255626		23.31	17.14	12.12	23.53	25.00	9.70	4.55	2.33	3.30	7.14	NA	1.07	0.00	3.67	5.60	7.50	0.00	0.84	20.00	19.11	12.77	NA	9.09	13.40	31.25	14.08	23.08	14.75	18.18	8.41	24.14	28.57	16.67	37.50	10.00	13.46	16.91	16.59	-0.31	0.659546	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7123517-7123782				chr17:7123516-7123517;chr17:7123782-7123783		2.33	0.00	4.71	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.66	0.00	0.61	3.03	1.71	0.00	0.49	0.00	7.69	3.12	0.00	5.88	3.74	0.00	0.00	0.00	2.00	0.00	1.05	0.00	0.00	5.00	0.00	3.70	3.81	1.28	0.00	1.17	1.17	0.744798	1.000000
N	jcn_only_AA	AP5Z1	chr7	+	chr7:4825316-4825880	chr7:4825316-4825631		chr7:4825632-4825880	chr7:4825880-4825881		4.76	1.64	0.00	0.00	0.00	NA	0.00	0.00	3.03	0.00	5.88	0.00	2.44	0.00	0.00	0.00	4.65	0.00	0.00	0.00	0.00	0.00	3.28	2.86	0.00	5.00	2.27	0.00	0.00	0.00	4.17	5.26	0.00	8.89	0.00	0.00	0.00	2.08	2.08	0.192560	0.663989
K	intron_retention	NEAT1	chr11	+	chr11:65190855-65191097				chr11:65190854-65190855;chr11:65191097-65191098		88.81	100.00	90.14	87.50	80.00	90.91	88.24	75.45	70.37	85.42	90.91	78.95	91.67	92.54	92.47	94.55	100.00	91.67	NA	84.44	91.67	93.65	94.74	95.54	100.00	86.78	86.15	93.55	91.84	91.55	79.69	84.51	NA	94.56	95.92	93.78	95.84	85.61	-10.23	0.066678	1.000000
N	alternative_donor	TNFRSF14	chr1	+	chr1:2493114-2493215;chr1:2492154-2493215	chr1:2493112-2493215		chr1:2492154-2493111;chr1:2493112-2493113	chr1:2492153-2492154;chr1:2493111-2493112		35.71	33.33	42.86	33.33	37.50	25.00	20.00	NA	10.00	27.27	26.67	NA	38.46	NA	29.41	19.05	33.33	NA	31.58	42.86	28.57	34.38	35.71	61.54	31.43	42.11	36.36	44.44	27.08	28.57	35.00	33.33	23.81	18.37	41.67	55.56	31.50	38.91	7.40	0.028572	0.329021
K	intron_retention	CXXC1	chr18	-	chr18:47809110-47809223				chr18:47809109-47809110;chr18:47809223-47809224		3.49	2.62	1.18	5.56	3.52	4.05	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.03	2.13	3.80	3.23	5.88	0.00	4.43	2.00	2.33	5.88	6.06	6.67	4.00	2.94	2.98	4.55	2.04	2.38	2.80	2.06	-0.73	0.510054	1.000000
N	alternative_acceptor	FAM135A,PCMT1	chr6	+	chr6:150123553-150131751	chr6:150123553-150131178		chr6:150131179-150131751	chr6:150131751-150131752		5.00	8.11	10.00	3.03	2.33	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	1.59	0.00	1.75	2.06	3.23	5.26	3.08	6.25	0.00	0.00	2.38	2.22	6.12	4.35	6.78	3.08	3.95	3.52	1.91	-1.62	0.373701	0.709013
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48664541-48665378;chr3:48664486-48665378	chr3:48664489-48665378		chr3:48664486-48664488;chr3:48664489-48664540	chr3:48664485-48664486;chr3:48664488-48664489		32.56	23.26	33.73	NA	35.48	NA	21.43	NA	22.22	NA	33.33	NA	33.33	NA	40.00	NA	20.00	NA	31.82	28.00	34.21	NA	24.14	NA	18.75	25.00	30.16	NA	37.50	NA	33.33	28.09	25.81	35.71	45.45	23.53	24.54	30.28	5.75	0.231100	0.684127
K	alternative_acceptor	ARHGAP26,PARP8	chr5	+	chr5:50129883-50130764	chr5:50129883-50130675		chr5:50130676-50130764	chr5:50130764-50130765		0.00	0.00	0.00	0.00	2.86	NA	0.00	0.00	4.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	2.38	0.00	0.00	NA	0.00	5.88	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.939174	0.984322
K	intron_retention	DMAP1	chr1	+	chr1:44684914-44685077				chr1:44684913-44684914;chr1:44685077-44685078		0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	0.00	NA	0.00	NA	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	alternative_acceptor	SFXN3	chr10	+	chr10:102797189-102798399	chr10:102797189-102797264		chr10:102797265-102798399	chr10:102798399-102798400		66.67	93.33	62.71	NA	61.54	NA	8.57	19.23	13.04	NA	10.87	NA	8.70	17.95	17.65	4.88	7.77	5.88	NA	55.56	50.00	41.67	48.57	50.00	78.57	50.00	56.00	30.00	36.73	33.33	70.00	65.62	NA	42.50	43.86	40.91	43.63	52.78	9.15	0.977709	0.994346
N	alternative_acceptor	INF2,PCNX	chr14	+	chr14:105170287-105172371	chr14:105170287-105170700		chr14:105170701-105172371	chr14:105172371-105172372		NA	18.18	5.00	NA	70.00	NA	3.33	2.94	3.03	3.90	5.97	4.00	7.14	3.33	7.69	16.18	8.20	4.65	NA	10.00	20.00	16.67	20.69	10.53	21.74	5.26	8.33	18.75	24.00	23.08	NA	0.00	NA	8.11	8.11	2.94	12.66	4.29	-8.37	0.200970	0.668038
K	alternative_acceptor	HDAC10,MAPK12	chr22	-	chr22:50687884-50688063	chr22:50687946-50688063		chr22:50687884-50687945	chr22:50687883-50687884		5.88	9.09	9.09	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	7.14	NA	0.00	0.00	0.00	4.35	3.85	0.00	5.56	NA	0.00	13.33	0.00	0.00	5.56	5.88	0.00	0.00	0.00	0.921052	0.978996
N	jcn_only_AA	LACC1	chr13	+	chr13:44463119-44464249;chr13:44463119-44464260;chr13:44463119-44464283	chr13:44463119-44464139		chr13:44464140-44464249;chr13:44464250-44464260;chr13:44464261-44464283	chr13:44464249-44464250;chr13:44464260-44464261;chr13:44464283-44464284		1.96	0.00	1.92	NA	0.00	NA	0.00	0.00	0.00	0.00	0.65	0.00	0.43	0.00	0.00	0.00	0.49	0.00	NA	4.26	NA	4.55	0.90	0.00	NA	0.00	0.00	0.00	0.00	NA	4.76	5.88	0.00	2.67	2.65	0.00	0.00	0.98	0.98	0.115671	0.663989
K	intron_retention	ELOVL1	chr1	-	chr1:43830680-43830856				chr1:43830679-43830680;chr1:43830856-43830857		3.90	0.00	4.76	NA	6.12	NA	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.78	0.00	0.00	0.00	3.23	6.45	8.57	9.38	9.38	NA	3.66	4.08	1.85	3.26	4.35	6.67	6.67	5.88	4.00	6.25	4.84	0.00	3.45	3.45	0.897198	1.000000
K	cassette	IL18	chr11	-	chr11:112020930-112025697	chr11:112020930-112024314;chr11:112024327-112025697		chr11:112024315-112024326			100.00	100.00	97.26	NA	97.22	NA	97.27	96.45	90.00	95.41	96.10	91.92	97.94	97.00	90.91	96.48	91.14	92.78	100.00	96.00	97.73	90.91	100.00	96.30	100.00	95.15	94.35	100.00	98.46	89.47	100.00	100.00	100.00	100.00	97.56	97.62	100.00	96.72	-3.28	0.111247	0.708559
N	alternative_donor	CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660872;chr14:95660257-95660551	chr14:95660257-95660868		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		0.00	5.00	2.04	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	10.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	5.88	0.00	0.00	0.00	0.846476	0.957804
K	intron_retention	TBC1D17	chr19	+	chr19:50383660-50384524				chr19:50383659-50383660;chr19:50384524-50384525		68.75	14.29	62.75	NA	33.33	NA	4.35	81.82	22.22	18.18	6.67	NA	4.00	90.32	52.17	15.38	14.29	NA	50.00	82.35	62.50	46.67	65.85	78.79	18.18	95.56	53.66	57.14	29.17	73.68	50.00	38.64	20.00	31.82	68.18	62.26	16.23	82.08	65.85	0.002362	0.920759
N	jcn_only_AA	RMDN1	chr8	-	chr8:87487826-87489522;chr8:87487183-87489522	chr8:87487144-87489522		chr8:87487144-87487182;chr8:87487183-87487825	chr8:87487143-87487144;chr8:87487182-87487183		8.70	8.51	21.62	18.75	10.00	21.05	28.12	12.50	16.67	17.86	18.33	17.39	9.38	13.33	16.67	14.29	16.67	26.67	19.57	0.00	11.76	NA	4.17	18.18	7.50	20.00	15.79	14.29	12.50	0.00	0.00	19.05	8.11	13.04	8.33	12.50	8.95	10.60	1.65	0.369880	0.663989
K	intron_retention		chrX	-	chrX:71347561-71348013				chrX:71347560-71347561;chrX:71348013-71348014		23.81	20.37	38.46	NA	15.38	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	5.71	3.57	NA	0.00	14.93	16.67	10.00	12.90	7.69	18.18	4.62	7.69	9.09	16.67	12.12	12.50	14.71	10.00	7.86	6.33	-1.53	0.902560	1.000000
K	cassette	CARS	chr11	-	chr11:3023284-3026595	chr11:3023284-3023770;chr11:3023831-3026595		chr11:3023771-3023830			100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	NA	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	94.74	100.00	100.00	100.00	99.19	100.00	0.81	0.119045	0.709176
K	intron_retention	NDUFS2	chr1	+	chr1:161180180-161180380				chr1:161180179-161180180;chr1:161180380-161180381		6.76	4.65	7.63	0.00	3.23	5.56	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.00	0.00	4.44	7.58	4.17	8.00	9.64	11.43	0.00	5.88	7.62	2.17	3.60	4.84	8.89	9.91	7.14	5.17	8.54	12.20	2.22	6.32	4.10	0.758005	1.000000
N	cassette	CTSB	chr8	-	chr8:11715450-11724762;chr8:11715450-11725478;chr8:11718989-11725478;chr8:11712424-11725509;chr8:11710989-11723665;chr8:11710989-11725478;chr8:11710989-11724762;chr8:11718989-11725509;chr8:11719988-11724762;chr8:11715450-11725509;chr8:11719988-11725509;chr8:11710989-11725509	chr8:11719988-11721884,chr8:11710989-11721884,chr8:11712424-11721884,chr8:11715450-11721884,chr8:11718989-11721884;chr8:11721973-11724762,chr8:11721973-11723665,chr8:11721973-11725478,chr8:11721973-11725509		chr8:11721885-11721972			4.40	6.23	6.26	3.45	4.32	8.93	8.00	5.69	7.49	8.00	7.80	8.77	10.92	8.20	11.53	10.57	9.88	9.83	7.66	6.17	12.75	6.29	6.41	6.58	15.94	5.49	5.40	5.63	6.75	5.43	7.40	8.10	8.30	5.65	5.48	5.89	8.15	5.93	-2.22	0.072728	0.634271
N	cassette	SLC26A11	chr17	+	chr17:78222057-78225127;chr17:78222057-78224971;chr17:78222057-78222952	chr17:78222057-78222373;chr17:78222474-78222952,chr17:78222474-78224971,chr17:78222474-78225127		chr17:78222374-78222473			92.86	73.68	76.92	100.00	85.37	90.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	71.43	94.12	87.50	96.67	81.82	94.29	100.00	100.00	100.00	100.00	100.00	100.00	71.05	100.00	80.00	96.43	89.47	97.26	90.00	94.12	4.12	0.613506	0.856028
K	alternative_donor	CORO7	chr16	-	chr16:4455569-4457562	chr16:4455569-4457501		chr16:4457502-4457562	chr16:4457562-4457563		90.32	78.57	91.67	NA	NA	NA	100.00	98.36	100.00	100.00	98.41	100.00	98.48	98.28	100.00	94.12	98.53	100.00	NA	85.71	NA	92.31	93.55	100.00	100.00	90.48	90.48	100.00	95.65	NA	85.00	93.75	NA	88.46	96.67	94.12	99.24	90.40	-8.84	0.639150	0.837834
N	jcn_only_AA	ADRBK1	chr11	+	chr11:67051421-67051744;chr11:67051421-67051681;chr11:67051421-67051747	chr11:67051421-67051735		chr11:67051682-67051735;chr11:67051736-67051744;chr11:67051745-67051747	chr11:67051735-67051736;chr11:67051744-67051745;chr11:67051747-67051748		7.69	3.31	3.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	NA	2.13	5.81	0.00	0.00	2.91	5.26	0.00	1.72	2.99	0.00	1.23	0.00	0.00	4.51	6.35	0.00	0.00	0.00	1.59	0.86	-0.73	0.820668	0.927675
N	jcn_only_AA	RIN3	chr14	+	chr14:93125815-93132835;chr14:93125815-93142877	chr14:93125815-93142819		chr14:93132836-93142819;chr14:93142820-93142877	chr14:93142819-93142820;chr14:93142877-93142878		93.48	100.00	96.81	100.00	94.74	NA	92.37	100.00	91.67	95.95	95.52	97.37	93.13	93.75	100.00	95.45	94.00	100.00	100.00	100.00	100.00	93.10	94.05	100.00	100.00	81.25	94.74	100.00	97.24	100.00	NA	100.00	100.00	93.51	94.29	100.00	100.00	93.75	-6.25	0.342791	0.663989
N	alternative_acceptor	SERBP1	chr1	-	chr1:67890661-67890765;chr1:67890670-67890765	chr1:67890643-67890765		chr1:67890643-67890660;chr1:67890661-67890669	chr1:67890642-67890643;chr1:67890660-67890661		72.50	61.22	71.11	67.57	68.52	75.00	59.03	64.71	64.37	60.92	62.35	66.30	58.86	63.89	57.14	61.33	61.65	58.23	60.71	61.90	58.82	68.00	60.47	67.02	78.26	62.50	60.71	67.90	59.78	65.15	70.59	61.54	70.37	66.25	65.12	70.79	60.97	64.30	3.33	0.739156	0.902878
N	jcn_only_AA	LACTB	chr15	+	chr15:63419889-63421683;chr15:63419889-63433199	chr15:63419889-63421687		chr15:63421684-63421687;chr15:63421688-63433199	chr15:63421687-63421688;chr15:63433199-63433200		2.75	0.00	3.06	0.00	0.00	0.00	3.60	2.94	3.88	2.65	2.15	3.20	3.80	2.65	5.13	3.24	4.35	1.76	NA	4.71	6.06	1.94	4.44	2.20	NA	1.05	4.84	2.00	0.00	1.20	5.19	3.41	0.00	2.30	2.56	1.66	1.80	2.84	1.04	0.319129	0.663989
N	intron_retention		chr22	-	chr22:50968177-50968332				chr22:50968176-50968177;chr22:50968332-50968333		96.27	100.00	96.40	96.88	100.00	100.00	93.75	93.65	92.44	93.07	91.89	94.95	90.14	91.78	92.64	90.62	92.75	94.34	100.00	93.65	100.00	100.00	100.00	97.62	100.00	95.92	97.08	97.04	93.33	95.00	95.69	96.03	100.00	94.87	100.00	96.43	100.00	94.67	-5.33	0.357849	1.000000
K	intron_retention	ATXN2L	chr16	+	chr16:28847498-28848071				chr16:28847497-28847498;chr16:28848071-28848072		93.75	92.86	90.91	87.10	91.18	91.67	84.62	80.00	83.78	82.76	90.32	75.00	91.67	83.33	84.09	85.71	87.88	90.00	92.11	84.38	95.65	95.83	93.75	95.45	86.36	100.00	97.06	89.66	95.35	85.29	93.33	93.90	93.75	92.31	95.83	92.16	91.89	88.85	-3.04	0.820125	1.000000
K	alternative_acceptor	ANKRD13D	chr11	+	chr11:67069123-67069259	chr11:67069123-67069202		chr11:67069203-67069259	chr11:67069259-67069260		100.00	94.76	98.21	NA	96.15	93.33	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	88.14	NA	100.00	100.00	95.45	NA	92.31	NA	76.47	100.00	92.47	NA	100.00	100.00	100.00	100.00	0.00	0.623022	0.854460
N	alternative_acceptor	TRADD	chr16	-	chr16:67189696-67190412;chr16:67189558-67190412	chr16:67190103-67190412		chr16:67189558-67189695;chr16:67189696-67190102	chr16:67189557-67189558;chr16:67189695-67189696		25.00	20.83	26.92	20.00	17.65	16.00	0.00	3.08	1.28	8.33	0.00	4.55	5.26	2.50	5.00	10.71	NA	12.50	20.00	21.21	13.33	21.43	21.74	33.33	25.00	12.50	18.75	17.14	14.29	15.85	18.52	17.24	NA	33.33	NA	24.39	20.00	15.51	-4.49	0.948265	0.988933
K	intron_retention	MAN1B1	chr9	+	chr9:140002115-140002839				chr9:140002114-140002115;chr9:140002839-140002840		5.88	11.19	2.94	0.00	4.55	0.00	2.86	0.00	4.76	0.00	1.54	0.00	4.11	6.67	4.76	3.57	3.64	0.00	4.58	4.65	3.92	4.76	4.29	0.00	2.70	5.00	5.71	11.76	4.92	3.45	9.43	3.80	3.75	4.55	5.17	3.23	3.93	5.44	1.51	0.862860	1.000000
K	intron_retention	DOCK10	chr2	-	chr2:225630555-225634927				chr2:225630554-225630555;chr2:225634927-225634928		3.01	3.41	6.90	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.71	0.00	0.94	1.54	0.00	0.00	1.68	0.00	0.00	1.04	3.45	0.00	3.48	0.00	0.00	2.31	5.41	0.00	1.78	0.00	2.17	2.27	2.44	1.92	1.75	0.00	0.47	1.85	1.39	0.717517	1.000000
N	cassette	NCKAP5L	chr12	-	chr12:50185835-50187134	chr12:50185835-50186228;chr12:50186372-50187134		chr12:50186229-50186371			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	93.33	100.00	NA	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
K	cassette	TCF25	chr16	+	chr16:89973731-89976998	chr16:89973731-89975373;chr16:89975492-89976998		chr16:89975374-89975491			6.45	3.74	3.45	5.19	4.02	3.93	10.98	10.42	7.27	11.36	11.11	11.11	7.32	9.43	11.43	8.43	8.16	12.50	2.92	6.41	6.32	7.35	3.47	5.08	2.78	8.33	5.50	5.95	8.33	5.94	2.94	2.04	2.06	3.23	4.35	5.26	3.33	7.39	4.06	0.218809	0.709176
N	alternative_donor	ANPEP	chr15	-	chr15:90344839-90346413;chr15:90344839-90346469;chr15:90344839-90344991	chr15:90344839-90345637		chr15:90344992-90345637;chr15:90345638-90346413;chr15:90346414-90346469	chr15:90345637-90345638;chr15:90346413-90346414;chr15:90346469-90346470		0.36	0.00	1.13	0.88	0.78	5.00	0.00	0.42	0.13	0.72	0.38	0.73	0.45	0.36	0.49	1.37	1.75	1.83	0.00	0.64	0.53	2.00	1.37	2.73	0.00	0.73	1.06	1.76	1.89	1.65	0.17	0.48	0.00	2.89	1.85	2.49	0.00	0.39	0.39	0.008030	0.211749
N	cassette	ARAP1	chr11	-	chr11:72423614-72425196	chr11:72423614-72424220;chr11:72424289-72425196		chr11:72424221-72424288			90.72	100.00	90.38	NA	NA	NA	100.00	100.00	98.86	100.00	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	93.18	100.00	100.00	96.10	94.35	96.43	100.00	NA	100.00	96.05	100.00	100.00	96.47	100.00	100.00	97.33	-2.67	0.083083	0.641134
N	alternative_acceptor	GGA1	chr22	+	chr22:38013005-38014454	chr22:38013005-38013288		chr22:38013289-38014454	chr22:38014454-38014455		11.43	26.67	15.15	NA	15.38	NA	4.55	9.09	4.35	5.00	6.82	9.09	8.47	12.50	16.67	8.11	8.33	NA	NA	10.53	15.38	13.04	18.75	15.00	30.00	23.53	20.00	22.73	27.50	NA	15.79	14.29	NA	20.69	19.12	22.22	17.57	11.96	-5.61	0.622771	0.854460
N	jcn_only_AA	PHC2	chr1	-	chr1:33790621-33794470;chr1:33793054-33794470;chr1:33791751-33794470	chr1:33793029-33794470		chr1:33790621-33791750;chr1:33791751-33793028;chr1:33793029-33793053	chr1:33790620-33790621;chr1:33791750-33791751;chr1:33793028-33793029		2.17	0.00	9.02	0.00	0.00	NA	2.99	8.43	6.06	7.14	7.45	0.00	5.13	3.12	5.88	5.80	4.07	5.26	0.00	5.43	0.00	6.45	3.59	0.00	NA	5.19	6.19	10.00	4.42	10.00	2.99	2.94	0.00	5.97	3.70	6.38	0.00	4.16	4.16	0.068670	0.663989
N	alternative_acceptor	TRADD	chr16	-	chr16:67189558-67190412;chr16:67190103-67190412	chr16:67189696-67190412		chr16:67189558-67189695;chr16:67189696-67190102	chr16:67189557-67189558;chr16:67189695-67189696		2.27	8.33	11.54	0.00	5.88	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	10.00	3.03	3.33	0.00	0.00	0.00	12.50	0.00	3.12	0.00	0.00	0.00	0.00	3.45	NA	0.00	NA	0.00	8.33	0.00	-8.33	0.112271	0.605363
N	jcn_only_AA	MAN2B1	chr19	-	chr19:12769325-12772073;chr19:12769328-12772073;chr19:12769110-12772073;chr19:12769431-12772073;chr19:12771897-12772073	chr19:12769322-12772073		chr19:12769110-12769321;chr19:12769322-12769324;chr19:12769325-12769327;chr19:12769328-12769430;chr19:12769431-12771896	chr19:12769109-12769110;chr19:12769321-12769322;chr19:12769324-12769325;chr19:12769327-12769328;chr19:12769430-12769431		0.98	0.00	1.92	6.25	3.28	0.00	1.31	1.27	0.58	1.47	1.83	1.50	1.23	0.94	1.34	2.27	1.85	0.83	5.13	2.65	5.38	3.65	3.58	2.88	1.90	1.29	0.92	1.18	2.67	3.62	3.17	3.95	6.38	2.10	3.12	2.29	1.60	1.28	-0.32	0.420824	0.691465
K	intron_retention	MRPL41	chr9	+	chr9:140446431-140446525				chr9:140446430-140446431;chr9:140446525-140446526		1.64	2.26	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	0.00	0.00	1.20	0.00	2.33	0.00	0.00	0.00	0.00	0.00	5.41	1.75	2.63	0.00	1.96	0.00	1.76	0.00	-1.76	0.997346	1.000000
K	intron_retention		chr10	-	chr10:103869801-103870285				chr10:103869800-103869801;chr10:103870285-103870286		0.00	3.03	7.14	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	33.33	0.00	0.00	NA	0.00	NA	0.00	4.76	NA	0.00	0.00	0.00	1.51	0.00	-1.51	0.577405	1.000000
K	intron_retention		chr17	-	chr17:7530112-7530260				chr17:7530111-7530112;chr17:7530260-7530261		67.07	86.76	75.00	50.00	53.49	43.33	9.30	8.25	2.70	5.88	2.63	9.52	18.18	10.45	14.29	16.00	7.69	4.55	55.74	60.47	44.64	78.57	56.10	66.67	42.50	34.31	49.02	37.84	13.89	22.81	73.13	74.00	68.67	75.86	73.08	63.64	49.12	47.39	-1.73	0.979296	1.000000
K	jcn_only_AD	PQBP1	chrX	+	chrX:48755377-48755774;chrX:48755366-48755774	chrX:48755298-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		34.29	37.04	12.28	12.82	22.86	30.00	9.43	20.69	8.51	11.43	21.21	22.22	15.79	12.20	8.47	20.45	18.18	20.00	30.95	13.51	19.64	14.29	18.82	25.00	44.83	29.17	15.00	18.52	23.88	17.39	21.28	12.86	27.66	23.91	25.40	16.98	29.30	20.98	-8.32	0.394512	0.660946
N	alternative_donor	MTCH1	chr6	-	chr6:36936751-36937814;chr6:36936751-36937076;chr6:36936751-36937462	chr6:36936751-36937070		chr6:36937071-36937076;chr6:36937077-36937462;chr6:36937463-36937814	chr6:36937076-36937077;chr6:36937462-36937463;chr6:36937814-36937815		7.10	5.65	7.79	8.33	6.01	3.51	1.92	2.40	2.10	2.16	1.55	1.32	2.37	2.46	5.04	4.00	1.94	1.86	4.00	4.76	3.90	8.33	7.58	9.68	6.67	10.96	12.55	5.39	9.30	4.80	4.33	6.08	3.92	6.98	7.11	6.28	3.96	4.54	0.58	0.437671	0.698333
K	intron_retention	HDAC10	chr22	-	chr22:50684257-50684338				chr22:50684256-50684257;chr22:50684338-50684339		21.05	29.09	34.62	18.18	17.65	16.22	0.00	NA	0.00	NA	0.00	NA	4.76	NA	15.38	0.00	0.00	NA	28.12	26.32	28.00	40.00	23.08	10.00	15.24	21.74	18.52	NA	27.27	20.00	26.92	20.00	23.68	8.33	10.00	12.00	19.46	24.03	4.57	0.819779	1.000000
K	intron_retention	HSPA4	chr5	+	chr5:132431838-132431842				chr5:132431837-132431838;chr5:132431842-132431843		71.88	76.19	68.63	100.00	83.78	NA	81.08	82.76	78.85	67.68	70.48	65.00	82.54	75.86	79.63	75.00	72.22	76.47	83.33	75.68	81.48	84.09	87.50	85.00	72.73	81.82	80.36	83.33	85.19	76.47	79.41	83.87	70.37	85.71	85.14	83.33	78.63	77.63	-1.00	0.999305	1.000000
N	cassette	EDEM2	chr20	-	chr20:33714179-33725682;chr20:33714179-33730175;chr20:33719587-33725682;chr20:33719587-33730175	chr20:33719587-33722540,chr20:33714179-33722540;chr20:33722753-33725682,chr20:33722753-33730175		chr20:33722541-33722752			100.00	100.00	90.00	NA	89.47	NA	95.45	93.42	93.33	95.65	88.68	92.86	91.55	94.52	89.74	92.31	86.05	100.00	NA	91.18	90.00	92.86	94.74	93.33	NA	92.75	92.59	100.00	100.00	100.00	92.73	86.44	84.62	90.32	78.57	90.24	93.50	93.09	-0.41	0.749806	0.919736
N	jcn_only_AD	SCCPDH	chr1	+	chr1:246927660-246929359;chr1:246927647-246929359	chr1:246927606-246929359		chr1:246927606-246927646;chr1:246927647-246927659	chr1:246927605-246927606;chr1:246927646-246927647		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.813787	0.912862
K	intron_retention	XAB2	chr19	-	chr19:7684743-7684831				chr19:7684742-7684743;chr19:7684831-7684832		3.77	2.20	1.54	0.00	1.44	0.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.10	6.52	4.15	0.00	0.00	0.00	0.40	2.04	0.00	0.00	0.00	0.00	14.84	6.03	4.82	0.00	0.00	0.00	1.25	2.91	1.66	0.481532	1.000000
N	jcn_only_AD	BRF1,CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660872;chr14:95660257-95660868	chr14:95660257-95660551		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		10.00	0.00	7.89	8.33	4.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	4.35	6.67	1.72	NA	11.76	NA	0.00	11.11	8.47	NA	16.67	0.00	18.18	6.67	9.09	0.00	0.00	0.00	2.17	8.34	6.16	0.265712	0.657607
N	cassette	ANPEP	chr15	-	chr15:90347849-90348551	chr15:90347849-90348176;chr15:90348449-90348551		chr15:90348177-90348448			99.30	100.00	97.86	100.00	100.00	NA	100.00	100.00	99.75	100.00	100.00	100.00	100.00	100.00	100.00	99.30	100.00	100.00	NA	99.25	100.00	94.68	92.96	98.30	100.00	100.00	98.53	98.98	100.00	98.10	98.80	98.80	NA	96.39	93.98	98.43	100.00	99.65	-0.35	0.089310	0.652861
N	coord_cassette	DDX1	chr2	+	chr2:15767270-15769725	chr2:15767270-15768761;chr2:15768835-15768920;chr2:15768964-15769725		chr2:15768762-15768834;chr2:15768921-15768963			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	92.68	100.00	95.45	100.00	100.00	100.00	0.00	0.782450	0.896615
K	cassette	TNIP1	chr5	-	chr5:150411945-150414562	chr5:150411945-150413168;chr5:150413361-150414562		chr5:150413169-150413360			96.69	94.44	96.70	97.83	95.00	97.16	100.00	100.00	99.59	99.08	98.98	99.74	100.00	100.00	99.40	98.56	98.01	99.68	90.24	97.30	96.09	98.93	94.26	98.46	100.00	99.22	97.79	97.73	97.12	98.89	95.76	95.40	85.71	97.03	96.69	98.37	97.22	98.26	1.04	0.277269	0.709176
K	intron_retention	COMMD3-BMI1	chr10	+	chr10:22607236-22607581				chr10:22607235-22607236;chr10:22607581-22607582		17.39	19.70	20.34	9.09	4.84	NA	0.00	5.56	0.00	0.00	1.54	0.00	2.00	4.17	12.50	0.00	0.00	0.00	3.92	15.38	6.12	6.67	7.50	25.00	0.00	30.00	18.64	7.14	6.35	8.33	31.58	16.36	6.98	13.89	13.46	8.00	2.96	16.39	13.43	0.158512	1.000000
N	jcn_only_AA	CD37	chr19	+	chr19:49842671-49843672;chr19:49842671-49842914	chr19:49842671-49843507		chr19:49842915-49843507;chr19:49843508-49843672	chr19:49843507-49843508;chr19:49843672-49843673		88.75	95.50	95.56	96.83	96.43	93.55	95.04	93.81	97.44	93.44	97.87	98.46	98.17	100.00	100.00	96.08	97.30	97.44	94.40	95.92	94.64	94.74	96.40	97.44	96.41	94.23	95.12	94.92	96.47	96.36	91.11	91.89	96.35	95.16	93.85	96.04	95.92	94.02	-1.90	0.275385	0.663989
K	intron_retention	BAX	chr19	+	chr19:49458220-49458804				chr19:49458219-49458220;chr19:49458804-49458805		7.35	4.71	12.22	3.57	10.20	6.67	3.92	5.26	4.17	0.00	2.00	0.00	4.76	2.78	9.68	2.63	4.41	0.00	7.55	17.86	5.26	6.25	8.24	14.29	3.51	5.88	8.73	1.54	6.06	4.35	17.39	19.64	16.28	13.51	19.44	16.67	4.73	6.62	1.88	0.616949	1.000000
K	intron_retention	CTD-3214H19.4,STXBP2	chr19	+	chr19:7705696-7705785				chr19:7705695-7705696;chr19:7705785-7705786		1.89	6.76	2.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.83	0.00	0.00	0.00	0.00	1.88	0.00	2.17	1.89	3.17	12.12	0.66	1.75	0.00	0.00	0.00	0.00	1.56	4.17	1.25	1.92	3.05	2.08	0.60	-1.48	0.547451	1.000000
N	jcn_only_AD	TM4SF19,TM4SF19-TCTEX1D2	chr3	-	chr3:196050869-196051141;chr3:196050869-196051311	chr3:196050869-196051145		chr3:196051142-196051145;chr3:196051146-196051311	chr3:196051145-196051146;chr3:196051311-196051312		4.76	0.00	NA	10.75	7.27	7.69	6.30	5.75	8.20	10.28	8.65	10.14	5.80	0.00	NA	10.91	10.00	13.13	7.89	11.11	8.75	10.70	6.45	11.65	13.33	18.18	23.08	8.65	8.18	7.25	4.76	12.50	11.20	11.11	10.69	7.69	7.09	5.25	-1.84	0.998389	0.999368
K	coord_cassette	RWDD1	chr6	+	chr6:116892819-116901457	chr6:116892819-116894020;chr6:116894149-116895220;chr6:116895335-116901457		chr6:116894021-116894148;chr6:116895221-116895334			0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.70	0.00	7.14	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.363217	0.643829
K	intron_retention	ARID4B,RBM34	chr1	-	chr1:235295313-235298966				chr1:235295312-235295313;chr1:235298966-235298967		2.22	2.50	4.76	5.88	3.08	2.27	0.00	0.00	2.70	0.00	3.33	0.00	0.00	6.90	2.44	16.67	4.76	NA	1.41	1.89	0.00	0.00	2.00	7.14	0.00	4.65	3.77	0.00	5.00	0.00	1.79	5.62	3.17	6.67	4.65	8.51	0.70	2.06	1.35	0.309140	1.000000
N	cassette	NOP56	chr20	+	chr20:2636393-2637046;chr20:2636189-2637046	chr20:2636393-2636579,chr20:2636189-2636579;chr20:2636681-2637046		chr20:2636580-2636680			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	C9orf69	chr9	-	chr9:139006797-139007301				chr9:139006796-139006797;chr9:139007301-139007302		90.91	97.50	96.88	80.95	94.74	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	81.82	100.00	96.15	91.30	NA	92.75	95.00	95.65	100.00	95.92	NA	87.50	NA	90.00	100.00	95.12	84.62	100.00	95.74	93.06	92.31	100.00	95.00	95.28	92.95	-2.33	0.786978	1.000000
K	intron_retention	UBA7	chr3	-	chr3:49848266-49848416				chr3:49848265-49848266;chr3:49848416-49848417		1.92	22.58	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	3.70	NA	NA	NA	0.00	0.00	3.90	0.00	NA	0.00	0.00	0.00	5.88	NA	7.69	0.00	2.94	0.00	0.96	0.96	0.818317	1.000000
N	jcn_only_AD	AMZ2P1,PELP1	chr17	-	chr17:62964500-62968651;chr17:62964500-62968435	chr17:62964500-62967040		chr17:62967041-62968435;chr17:62968436-62968651	chr17:62968435-62968436;chr17:62968651-62968652		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.79	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
N	alternative_donor	SMAP2	chr1	+	chr1:40878775-40879830	chr1:40879403-40879830		chr1:40878775-40879402	chr1:40878774-40878775		8.99	5.13	11.72	0.00	0.00	0.00	1.77	1.63	0.50	0.46	0.00	0.73	2.11	1.10	2.61	1.12	1.01	1.32	0.00	5.19	2.50	4.62	1.61	9.38	4.35	6.37	5.08	3.23	2.63	2.45	6.98	6.36	4.35	6.59	4.17	9.09	3.23	5.78	2.55	0.199530	0.570816
K	intron_retention	PIH1D1	chr19	-	chr19:49950357-49950594				chr19:49950356-49950357;chr19:49950594-49950595		7.14	5.45	7.25	4.35	6.49	4.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.22	4.88	4.07	5.00	12.50	0.00	3.85	0.00	4.48	0.00	3.23	4.17	8.22	8.05	4.35	12.90	11.63	3.33	4.10	2.44	-1.66	0.969936	1.000000
K	alternative_acceptor	HLA-DMA	chr6	-	chr6:32917565-32918295	chr6:32917667-32918295		chr6:32917565-32917666	chr6:32917564-32917565		100.00	95.37	96.61	89.23	89.49	90.67	91.76	100.00	100.00	88.17	86.25	87.80	91.75	100.00	82.35	93.14	86.59	85.86	90.87	90.20	89.29	90.30	90.84	90.44	92.67	96.70	95.06	90.83	88.89	91.88	91.67	94.39	89.77	87.70	91.48	91.01	91.75	98.35	6.59	0.063445	0.580713
N	alternative_donor		chr5	-	chr5:1330499-1331917	chr5:1330499-1331913		chr5:1331914-1331917	chr5:1331917-1331918		90.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	NA	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.199505	0.570816
K	intron_retention		chr18	+	chr18:48466011-48466657				chr18:48466010-48466011;chr18:48466657-48466658		2.56	21.43	4.84	NA	2.04	NA	0.00	0.51	0.00	0.00	0.33	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	1.00	0.00	0.00	2.34	0.00	NA	1.20	2.78	0.00	1.16	0.00	2.38	0.00	0.00	1.12	1.35	1.25	0.00	1.10	1.10	0.594775	1.000000
K	alternative_donor	HLA-DMA	chr6	-	chr6:32916646-32917050	chr6:32916646-32917047		chr6:32917048-32917050	chr6:32917050-32917051		35.05	41.18	36.11	36.98	38.71	40.20	86.58	85.71	89.29	79.57	84.71	82.80	86.62	85.71	90.00	89.86	83.33	87.88	86.34	80.43	87.50	87.07	86.33	87.36	11.60	8.45	4.92	8.88	8.51	9.28	86.96	81.65	85.28	84.62	85.76	84.08	85.81	83.07	-2.74	0.896172	0.977754
N	jcn_only_AD	C19orf38	chr19	+	chr19:10978929-10979893;chr19:10973884-10979893	chr19:10978847-10979893		chr19:10973884-10978846;chr19:10978847-10978928	chr19:10973883-10973884;chr19:10978846-10978847		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	EMC4	chr15	+	chr15:34520048-34520629				chr15:34520047-34520048;chr15:34520629-34520630		4.35	0.00	4.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.39	3.45	0.00	0.00	1.72	6.25	1.89	0.00	0.00	3.70	0.00	0.00	3.45	6.35	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	RHOT2	chr16	+	chr16:719607-720122				chr16:719606-719607;chr16:720122-720123		4.76	0.00	18.52	NA	NA	NA	0.00	0.00	0.00	0.00	4.00	0.00	2.78	0.00	0.00	4.00	4.55	0.00	NA	13.64	NA	7.14	7.41	6.25	0.00	13.04	13.33	9.09	4.35	NA	6.67	15.15	NA	5.00	9.09	8.82	0.00	5.71	5.71	0.261514	1.000000
K	alternative_first_exon	ARHGAP27	chr17	-	chr17:43483450-43506988;chr17:43483450-43487597	chr17:43483450-43502929	chr17:43506989-43507663;chr17:43487598-43487790	chr17:43502930-43502997			0.00	17.39	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.391002	0.552368
K	cassette	BABAM1	chr19	+	chr19:17387719-17389653	chr19:17387719-17388192;chr19:17388289-17389653		chr19:17388193-17388288			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.96	0.00	1.12	0.00	1.64	0.00	5.77	3.57	3.57	0.00	0.00	0.00	0.00	1.47	1.06	0.00	0.00	0.00	0.48	0.00	-0.48	0.536761	0.809056
N	alternative_acceptor	MFSD11	chr17	+	chr17:74772624-74774282;chr17:74772624-74777122;chr17:74772624-74774269	chr17:74772624-74774301		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	6.25	0.00	5.88	NA	0.00	NA	6.67	4.35	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.964482	0.991031
K	intron_retention	PABPC4	chr1	-	chr1:40027460-40027744				chr1:40027459-40027460;chr1:40027744-40027745		3.17	0.00	4.76	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.43	0.48	0.00	0.00	5.80	0.00	1.91	0.00	0.67	0.00	3.28	0.00	0.00	0.67	0.00	3.26	3.57	0.71	0.67	1.20	0.91	0.00	3.21	3.21	0.091514	1.000000
N	jcn_only_AA	BUB3	chr10	+	chr10:124922345-125072528;chr10:124922345-124923335	chr10:124922345-124924562		chr10:124923336-124924562;chr10:124924563-125072528	chr10:124924562-124924563;chr10:125072528-125072529		43.75	78.87	62.96	58.33	74.00	50.79	47.37	37.50	46.51	23.33	31.03	27.27	54.90	34.48	42.11	43.14	41.67	33.33	59.46	47.83	63.27	62.96	58.97	59.09	78.12	35.48	60.87	59.38	67.65	58.54	37.50	40.74	63.64	54.76	59.46	57.69	61.55	37.50	-24.05	0.003778	0.442962
N	cassette	AUP1	chr2	-	chr2:74755134-74756258;chr2:74755134-74755543	chr2:74755134-74755374;chr2:74755449-74755543,chr2:74755449-74756258		chr2:74755375-74755448			100.00	95.96	100.00	97.62	95.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.23	97.18	100.00	100.00	98.18	98.46	100.00	98.57	100.00	100.00	100.00	100.00	100.00	100.00	95.24	97.22	98.88	99.00	97.98	100.00	2.02	0.199714	0.709176
K	alternative_acceptor	PSMA3	chr14	+	chr14:58714551-58718841	chr14:58714551-58718836		chr14:58718837-58718841	chr14:58718841-58718842		92.86	100.00	86.67	89.29	100.00	87.50	97.92	93.15	94.67	95.93	98.91	97.58	100.00	95.18	92.86	98.31	96.55	98.62	100.00	97.18	97.22	92.96	94.83	97.20	NA	92.06	97.83	97.33	92.86	96.85	78.57	84.27	100.00	96.34	88.89	94.12	100.00	93.00	-7.00	0.029619	0.554862
N	jcn_only_AD	IRF3	chr19	-	chr19:50164086-50164706;chr19:50164086-50165204;chr19:50164086-50165441	chr19:50164086-50165401		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	1.03	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.35	8.33	NA	0.00	NA	0.00	0.00	0.00	0.304664	0.657607
K	intron_retention	DYNC1H1	chr14	+	chr14:102515920-102516050				chr14:102515919-102515920;chr14:102516050-102516051		5.44	2.68	3.23	1.53	2.08	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.18	0.00	0.00	2.21	4.32	4.17	2.86	3.47	2.29	2.54	4.08	0.00	1.50	0.64	0.56	9.18	7.41	5.52	2.46	1.79	2.48	2.38	4.20	1.83	0.627684	1.000000
K	cassette	QARS	chr3	-	chr3:49133513-49135624	chr3:49133513-49135424;chr3:49135551-49135624		chr3:49135425-49135550			91.07	99.63	98.41	95.24	97.46	98.07	96.94	96.15	100.00	91.49	100.00	97.62	97.44	88.89	100.00	95.35	92.54	100.00	97.64	94.44	97.80	100.00	96.55	96.15	97.73	92.16	100.00	100.00	97.54	98.53	94.44	96.34	97.22	94.00	98.48	95.65	97.54	93.30	-4.24	0.004811	0.240902
K	cassette	CLN3,RP11-435I10.4	chr16	-	chr16:28498863-28500610;chr16:28498863-28499911	chr16:28498863-28498982;chr16:28499063-28499911,chr16:28499063-28500610		chr16:28498983-28499062			93.44	100.00	93.10	NA	84.62	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	95.45	100.00	85.71	100.00	100.00	100.00	97.73	100.00	100.00	100.00	95.00	96.43	95.74	94.12	100.00	96.15	94.12	100.00	100.00	96.05	100.00	100.00	0.00	0.416233	0.728056
K	intron_retention	SHARPIN	chr8	-	chr8:145153898-145153983				chr8:145153897-145153898;chr8:145153983-145153984		1.64	7.69	2.70	6.06	0.00	5.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.40	6.25	2.30	10.00	4.55	0.00	2.44	0.00	2.44	0.00	4.35	0.00	2.17	6.90	6.19	3.45	2.86	0.00	3.42	0.82	-2.60	0.571340	1.000000
N	alternative_acceptor	TNIP1	chr5	-	chr5:150410309-150411847;chr5:150410107-150411847;chr5:150410481-150411847;chr5:150410875-150411847;chr5:150410333-150411847	chr5:150410235-150411847		chr5:150410107-150410234;chr5:150410235-150410308;chr5:150410309-150410332;chr5:150410333-150410480;chr5:150410481-150410874	chr5:150410106-150410107;chr5:150410234-150410235;chr5:150410308-150410309;chr5:150410332-150410333;chr5:150410480-150410481		20.37	21.43	21.51	18.44	13.33	20.90	15.22	16.62	17.19	15.53	10.77	20.27	13.95	13.33	17.52	15.31	13.64	18.10	21.74	20.28	21.36	18.43	16.20	16.75	18.18	18.98	19.51	13.46	12.40	16.97	23.93	24.43	20.39	17.96	18.97	21.14	19.29	19.63	0.35	0.832733	0.940678
N	intron_retention		chr11	+	chr11:67816905-67817129				chr11:67816904-67816905;chr11:67817129-67817130		75.93	71.14	79.37	88.70	90.91	82.50	100.00	82.61	NA	NA	100.00	NA	90.48	88.89	81.48	100.00	100.00	NA	79.82	76.00	79.47	89.09	92.50	86.36	83.33	83.33	82.41	87.30	90.27	84.62	72.22	74.59	74.31	85.94	82.09	84.91	81.57	79.31	-2.27	0.997610	1.000000
N	cassette	EAPP	chr14	-	chr14:34994014-35002649	chr14:34994014-34998563;chr14:34998682-35002649		chr14:34998564-34998681			89.66	100.00	100.00	NA	100.00	NA	91.89	91.30	100.00	100.00	96.67	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	92.86	94.44	100.00	100.00	80.00	NA	85.19	100.00	83.33	100.00	100.00	80.65	100.00	100.00	100.00	100.00	92.86	100.00	90.48	-9.52	0.058093	0.601462
K	cassette	RBM39	chr20	-	chr20:34317288-34319862	chr20:34317288-34317383;chr20:34317450-34319862		chr20:34317384-34317449			97.27	100.00	99.48	100.00	96.30	NA	96.51	96.08	100.00	96.05	93.23	97.98	94.12	100.00	98.70	96.27	96.75	98.88	100.00	98.17	93.33	98.99	96.36	99.32	NA	96.63	97.84	96.83	95.38	94.64	97.70	98.95	NA	98.68	97.79	99.51	98.25	97.48	-0.77	0.992314	0.997468
N	alternative_acceptor	LSS	chr21	-	chr21:47608736-47610989	chr21:47609597-47610989		chr21:47608736-47609596	chr21:47608735-47608736		91.18	100.00	83.33	97.31	97.30	96.59	100.00	94.68	96.92	97.78	100.00	98.08	100.00	97.03	97.59	100.00	100.00	97.62	96.15	86.75	93.81	95.00	100.00	94.12	100.00	91.50	91.67	96.88	100.00	96.89	81.93	91.67	91.18	96.19	100.00	94.29	100.00	91.34	-8.66	0.022971	0.546324
K	intron_retention		chr22	+	chr22:50654297-50655119				chr22:50654296-50654297;chr22:50655119-50655120		0.00	3.03	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.13	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	1.02	4.44	3.03	0.00	0.00	3.23	0.00	2.63	2.11	0.00	0.00	0.00	1.21	0.00	-1.21	0.842827	1.000000
K	intron_retention	PTPN23	chr3	+	chr3:47454118-47454195				chr3:47454117-47454118;chr3:47454195-47454196		31.25	33.33	30.77	11.11	15.62	NA	8.33	9.09	7.14	8.70	11.11	NA	4.17	11.76	20.00	10.81	0.00	NA	13.04	18.75	12.50	8.70	22.22	16.00	21.74	6.25	17.86	8.70	14.81	7.14	27.27	28.12	17.24	21.43	18.18	15.38	15.14	15.25	0.12	0.844938	1.000000
K	cassette	MRPL47	chr3	-	chr3:179319579-179322314	chr3:179319579-179320439;chr3:179320586-179322314		chr3:179320440-179320585			100.00	93.75	85.19	100.00	92.86	88.24	93.33	86.67	83.33	96.61	98.53	97.73	95.00	88.24	91.67	94.23	97.22	97.22	92.31	100.00	91.30	96.30	95.35	92.31	NA	85.71	100.00	92.00	96.67	89.66	85.71	78.26	85.71	91.43	94.12	88.89	93.33	87.45	-5.88	0.776902	0.934318
N	jcn_only_AD	FCGR2A,RP11-25K21.6	chr1	+	chr1:161484665-161487764;chr1:161483723-161487764	chr1:161484391-161487764		chr1:161483723-161484390;chr1:161484391-161484664	chr1:161483722-161483723;chr1:161484390-161484391		0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.34	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_donor	INPPL1	chr11	+	chr11:71946450-71946718	chr11:71946496-71946718		chr11:71946450-71946495	chr11:71946449-71946450		94.44	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	95.00	100.00	100.00	94.87	NA	NA	100.00	100.00	92.31	100.00	100.00	91.43	100.00	94.83	NA	100.00	NA	96.15	98.00	100.00	96.77	97.67	100.00	100.00	98.08	-1.92	0.745344	0.894054
N	alternative_acceptor	RIN3	chr14	+	chr14:93151496-93152957;chr14:93151496-93154030	chr14:93151496-93154270		chr14:93152958-93154030;chr14:93154031-93154270	chr14:93154030-93154031;chr14:93154270-93154271		89.47	87.50	85.53	90.00	85.90	NA	96.00	NA	87.50	89.66	90.53	94.12	95.69	NA	100.00	87.50	90.00	93.33	97.67	90.00	93.94	88.00	83.15	88.24	93.55	100.00	89.83	95.24	89.76	90.91	91.67	97.22	94.59	84.21	84.44	88.89	95.14	90.84	-4.30	0.647565	0.871112
K	intron_retention	TRAFD1	chr12	+	chr12:112589945-112590230				chr12:112589944-112589945;chr12:112590230-112590231		6.90	0.00	9.30	13.33	7.14	2.63	0.00	0.76	0.00	0.00	0.00	0.75	0.00	0.46	1.70	0.00	0.00	0.75	0.00	6.25	2.04	7.41	4.08	7.32	0.00	4.56	5.19	3.37	2.50	2.75	4.82	7.53	0.00	8.96	6.78	7.58	0.00	4.69	4.69	0.047380	1.000000
K	cassette	NFYC	chr1	+	chr1:41232376-41235027	chr1:41232376-41232589;chr1:41232647-41235027		chr1:41232590-41232646			2.78	0.00	4.08	10.53	10.42	0.00	6.38	5.26	5.71	9.80	2.78	6.67	4.55	10.00	6.82	11.11	4.23	4.17	0.00	6.06	0.00	0.00	3.28	0.00	0.00	11.11	6.98	7.14	5.00	3.70	3.45	5.26	3.33	5.00	4.08	5.00	1.67	5.66	4.00	0.048247	0.558290
K	intron_retention	ZNF687	chr1	+	chr1:151263050-151263190				chr1:151263049-151263050;chr1:151263190-151263191		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	2.63	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	TMEM256-PLSCR3	chr17	-	chr17:7293181-7293952	chr17:7293761-7293952		chr17:7293181-7293760	chr17:7293180-7293181		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	70.00	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_acceptor	S100B	chr21	-	chr21:48022330-48024925	chr21:48022337-48024925		chr21:48022330-48022336	chr21:48022329-48022330		0.00	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	3.28	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	NA	NA	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	MARCH5	chr10	+	chr10:94109595-94110847				chr10:94109594-94109595;chr10:94110847-94110848		15.25	6.67	22.41	NA	15.79	0.00	0.00	0.00	0.00	0.00	1.69	1.85	0.00	0.00	0.00	0.00	0.00	0.00	8.33	11.63	0.00	17.86	11.76	18.92	NA	14.29	18.00	6.90	8.33	3.33	18.75	19.61	0.00	20.90	9.62	18.84	0.00	12.96	12.96	0.251060	1.000000
N	jcn_only_AA	THOC7	chr3	-	chr3:63820900-63820999	chr3:63820934-63820999		chr3:63820900-63820933	chr3:63820899-63820900		0.00	5.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.507237	0.758797
K	cassette	ZNF516	chr18	-	chr18:74074513-74083421	chr18:74074513-74082482;chr18:74082551-74083421		chr18:74082483-74082550			85.71	100.00	91.67	NA	100.00	100.00	71.43	NA	NA	NA	85.00	NA	78.26	100.00	NA	NA	95.24	NA	100.00	100.00	92.31	100.00	92.31	NA	100.00	100.00	82.35	NA	91.67	NA	100.00	94.12	100.00	93.10	100.00	100.00	100.00	100.00	0.00	0.392301	0.709492
N	cassette	FAM20C	chr7	+	chr7:195733-286380	chr7:195733-208897;chr7:208977-286380		chr7:208898-208976			97.95	100.00	96.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.12	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	NA	100.00	98.11	100.00	100.00	100.00	94.12	96.34	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.231679	0.709176
K	intron_retention		chr21	+	chr21:34633033-34634865				chr21:34633032-34633033;chr21:34634865-34634866		8.70	0.00	8.70	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	4.55	3.45	0.00	4.35	0.00	0.00	0.00	0.692941	1.000000
K	cassette	RNPEP	chr1	+	chr1:201965392-201969029	chr1:201965392-201966446;chr1:201966683-201969029		chr1:201966447-201966682			100.00	100.00	96.47	NA	96.00	NA	98.39	100.00	100.00	100.00	100.00	100.00	98.73	98.78	97.70	100.00	100.00	98.31	100.00	98.44	96.67	100.00	97.62	100.00	NA	98.67	96.77	93.94	98.57	94.44	100.00	97.47	100.00	100.00	100.00	99.07	100.00	99.39	-0.61	0.823003	0.941649
K	intron_retention	SAFB2	chr19	-	chr19:5587992-5590288				chr19:5587991-5587992;chr19:5590288-5590289		4.84	0.46	6.67	2.20	1.74	2.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.26	1.61	1.68	3.51	3.23	13.51	0.00	4.44	4.05	2.70	4.35	2.27	2.52	2.67	1.85	5.08	3.70	6.82	0.23	2.06	1.83	0.464530	1.000000
N	alternative_acceptor	FAM160A2	chr11	-	chr11:6233098-6235640	chr11:6233207-6235640		chr11:6233098-6233206	chr11:6233097-6233098		3.23	3.51	2.50	0.00	3.23	7.14	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	3.03	4.17	3.12	0.00	0.00	0.00	3.45	0.00	NA	0.00	0.00	1.85	2.22	5.88	2.86	3.57	0.00	0.00	0.00	0.622279	0.854460
N	jcn_only_AA	SLC50A1	chr1	+	chr1:155110575-155110671;chr1:155110575-155110637	chr1:155110575-155110655		chr1:155110638-155110655;chr1:155110656-155110671	chr1:155110655-155110656;chr1:155110671-155110672		100.00	100.00	95.24	93.55	100.00	96.88	94.87	92.31	95.96	91.67	100.00	100.00	100.00	95.65	94.83	94.23	100.00	100.00	100.00	100.00	95.74	92.86	100.00	94.59	100.00	95.00	94.83	93.75	96.43	93.02	88.89	97.56	100.00	96.00	100.00	98.08	100.00	95.33	-4.67	0.091243	0.663989
K	cassette	BAG6	chr6	-	chr6:31608084-31608421	chr6:31608084-31608161;chr6:31608306-31608421		chr6:31608162-31608305			96.23	97.81	97.32	98.36	97.52	95.81	100.00	100.00	96.92	97.30	100.00	100.00	98.10	95.52	100.00	98.72	98.82	95.65	98.70	95.83	100.00	95.16	95.50	98.33	96.82	98.31	97.98	97.06	98.13	98.11	97.17	97.22	94.15	97.65	97.92	95.37	97.95	96.70	-1.25	0.703644	0.892190
K	intron_retention	INO80B-WBP1,WBP1	chr2	+	chr2:74687177-74687347				chr2:74687176-74687177;chr2:74687347-74687348		9.68	0.00	13.16	8.70	3.08	8.00	0.00	5.88	2.44	2.27	0.00	3.03	0.00	0.00	2.86	0.00	6.12	0.00	9.09	6.25	1.85	5.26	5.00	0.00	0.00	8.70	5.00	4.00	1.59	3.45	9.52	9.43	10.81	9.52	12.00	5.00	0.00	7.47	7.47	0.518173	1.000000
N	alternative_donor	CFLAR	chr2	+	chr2:202022786-202025154;chr2:202019131-202025154	chr2:202014559-202025154		chr2:202014559-202019130;chr2:202019131-202022785	chr2:202014558-202014559;chr2:202019130-202019131		97.22	92.86	96.97	100.00	100.00	96.30	100.00	98.80	99.10	99.35	100.00	99.47	100.00	99.07	98.69	98.50	100.00	99.43	100.00	97.85	97.56	98.89	100.00	98.71	NA	98.26	97.33	98.59	100.00	98.57	97.06	97.26	100.00	96.35	97.37	97.73	100.00	98.06	-1.94	0.735006	0.890213
K	intron_retention		chr11	+	chr11:211350-212415				chr11:211349-211350;chr11:212415-212416		5.88	0.00	3.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	4.17	4.08	0.00	NA	2.63	8.20	3.23	4.00	0.00	10.81	7.58	0.00	2.27	0.00	2.13	0.00	2.48	2.48	0.196162	1.000000
K	intron_retention	SGSM3	chr22	+	chr22:40803076-40803204				chr22:40803075-40803076;chr22:40803204-40803205		7.14	12.12	16.67	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	10.00	4.17	6.67	6.67	6.25	0.00	6.25	0.00	NA	5.00	0.00	0.00	9.09	3.33	NA	11.54	0.00	NA	4.17	0.00	13.33	12.50	0.00	0.00	7.14	7.14	0.886978	1.000000
N	jcn_only_AA		chrX	+	chrX:54841209-54842313	chrX:54841209-54841680		chrX:54841681-54842313	chrX:54842313-54842314		94.96	100.00	98.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.29	92.22	94.79	100.00	100.00	100.00	100.00	95.51	97.56	100.00	100.00	100.00	92.06	94.32	90.48	100.00	100.00	100.00	100.00	95.23	-4.77	0.469013	0.730109
K	jcn_only_AD	OS9	chr12	+	chr12:58089760-58090057	chr12:58089822-58090057		chr12:58089760-58089821	chr12:58089759-58089760		94.91	95.83	95.48	96.55	99.21	100.00	99.21	99.77	99.73	99.67	99.27	99.68	99.76	99.38	100.00	99.62	99.02	99.25	100.00	95.90	97.46	97.84	95.86	98.22	98.33	98.10	95.78	99.34	99.22	98.88	91.71	93.61	91.94	97.18	97.53	97.66	98.77	97.00	-1.77	0.632034	0.817497
K	intron_retention	HNRNPA2B1	chr7	-	chr7:26237353-26237450				chr7:26237352-26237353;chr7:26237450-26237451		2.17	0.00	4.48	0.00	0.00	NA	0.78	0.90	2.22	0.00	0.61	0.00	0.57	0.00	5.71	0.89	0.83	0.49	NA	2.46	0.00	1.14	0.97	3.47	0.00	6.94	4.71	2.06	1.12	1.64	1.64	2.56	0.00	6.45	3.01	4.76	0.00	1.90	1.90	0.227076	1.000000
N	alternative_acceptor	ADA	chr20	-	chr20:43248842-43248939;chr20:43248587-43248939	chr20:43248489-43248939		chr20:43248489-43248586;chr20:43248587-43248841	chr20:43248488-43248489;chr20:43248586-43248587		96.21	98.05	94.38	97.32	96.32	98.63	100.00	100.00	100.00	99.00	97.87	98.64	100.00	100.00	100.00	98.87	98.80	98.48	95.06	96.17	96.04	97.12	96.81	96.22	97.14	97.23	97.03	98.38	97.99	98.90	95.41	92.08	96.60	96.79	97.44	97.41	97.59	96.72	-0.88	0.795793	0.924465
N	cassette	SLC11A1	chr2	+	chr2:219247099-219251357;chr2:219247099-219249869;chr2:219247099-219248965;chr2:219247099-219249041	chr2:219247099-219247682;chr2:219247826-219251357,chr2:219247826-219249041,chr2:219247826-219249869,chr2:219247826-219248965		chr2:219247683-219247825			91.23	94.44	90.37	NA	87.88	NA	97.52	99.31	97.22	95.04	96.84	97.92	97.24	98.20	100.00	94.67	98.38	96.55	90.00	90.71	95.56	90.62	91.67	96.30	100.00	94.83	92.18	94.92	92.96	94.74	88.46	89.68	86.67	85.54	91.14	93.10	95.84	93.03	-2.81	0.852392	0.950337
K	jcn_only_AD	PRPF4B	chr6	+	chr6:4062868-4063307	chr6:4062995-4063307		chr6:4062868-4062994	chr6:4062867-4062868		0.00	0.00	0.00	0.00	0.00	3.23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5.77	0.00	7.32	8.33	0.00	0.00	0.00	0.00	2.86	0.00	4.35	0.00	15.38	10.00	1.72	0.00	3.85	0.00	0.86	0.00	-0.86	0.655606	0.822313
K	intron_retention	AKT1	chr14	-	chr14:105236758-105237081				chr14:105236757-105236758;chr14:105237081-105237082		2.27	5.43	1.20	10.00	2.70	NA	0.00	0.88	0.00	0.00	0.77	0.00	0.00	0.00	2.02	1.98	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	10.00	1.12	2.25	0.00	0.96	0.00	0.00	1.54	0.00	2.17	2.67	1.89	0.00	0.44	0.44	0.918085	1.000000
N	alternative_acceptor	HCLS1	chr3	-	chr3:121366330-121376125;chr3:121366219-121376125;chr3:121372741-121376125;chr3:121375114-121376125	chr3:121366296-121376125		chr3:121366219-121366295;chr3:121366296-121366329;chr3:121366330-121372740;chr3:121372741-121375113	chr3:121366218-121366219;chr3:121366295-121366296;chr3:121366329-121366330;chr3:121372740-121372741		99.28	97.80	99.38	95.00	98.55	NA	100.00	99.33	100.00	100.00	100.00	100.00	99.64	99.34	100.00	99.33	99.67	100.00	92.59	100.00	98.08	100.00	100.00	100.00	92.31	99.34	99.39	100.00	99.44	100.00	100.00	99.11	93.33	99.25	99.45	100.00	95.56	99.34	3.78	0.057776	0.570243
N	jcn_only_AD	FCGR2A	chr1	+	chr1:161479530-161479609;chr1:161476451-161479609;chr1:161476382-161479609	chr1:161476498-161479609		chr1:161476382-161476450;chr1:161476451-161476497;chr1:161476498-161479529	chr1:161476381-161476382;chr1:161476450-161476451;chr1:161476497-161476498		0.38	0.00	0.24	5.88	0.00	6.25	0.26	0.11	0.84	2.48	0.38	2.68	0.57	0.44	0.00	1.67	0.00	1.75	0.00	0.19	0.00	1.48	0.00	2.23	NA	0.41	0.31	0.67	0.69	2.21	0.00	0.46	0.00	0.00	0.00	2.03	0.00	0.29	0.29	0.530267	0.755474
N	jcn_only_AA	KCNQ1,TALDO1	chr11	+	chr11:2683312-2790073	chr11:2683312-2683652		chr11:2683653-2790073	chr11:2790073-2790074		0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.88	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_donor	RPL35A	chr3	+	chr3:197677171-197677806;chr3:197677093-197677806;chr3:197677631-197677806	chr3:197677474-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		1.50	0.66	2.04	2.48	5.71	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	3.51	0.84	2.94	1.47	4.51	1.85	1.96	1.03	0.96	0.55	2.34	2.70	2.19	1.69	2.27	5.43	7.93	1.00	1.73	0.73	0.334999	0.650093
N	alternative_donor	STAT3	chr17	-	chr17:40469243-40474299;chr17:40469243-40474302	chr17:40469243-40471873		chr17:40471874-40474299;chr17:40474300-40474302	chr17:40474299-40474300;chr17:40474302-40474303		14.52	21.74	15.73	5.00	4.76	3.39	0.00	0.72	0.49	0.55	0.00	0.75	2.38	0.85	1.61	1.22	1.41	1.05	5.56	11.00	4.55	17.07	10.00	18.05	14.29	6.80	8.47	4.17	3.03	3.50	9.09	14.06	6.67	17.35	10.64	18.96	6.12	7.95	1.83	0.758125	0.902356
N	cassette	U2AF2	chr19	+	chr19:56172556-56173867	chr19:56172556-56173136;chr19:56173201-56173867		chr19:56173137-56173200			3.45	0.00	1.85	0.00	2.50	NA	1.11	0.00	0.00	0.00	0.00	0.00	1.10	0.00	1.14	2.04	0.00	0.00	7.69	3.45	0.00	1.61	1.03	5.56	0.00	6.06	1.43	0.00	1.75	0.00	6.98	2.80	4.76	2.67	0.00	4.05	1.10	3.45	2.35	0.625104	0.863282
K	intron_retention	LSM14B	chr20	+	chr20:60708532-60709218				chr20:60708531-60708532;chr20:60709218-60709219		20.51	0.00	12.07	0.00	8.70	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.44	0.00	0.00	NA	10.00	11.54	0.00	3.33	8.33	0.00	0.00	6.25	5.66	3.70	6.52	NA	28.57	22.73	NA	9.09	10.91	10.26	0.00	8.89	8.89	0.161030	1.000000
K	intron_retention	POLR2A	chr17	+	chr17:7402811-7403957				chr17:7402810-7402811;chr17:7403957-7403958		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.03	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	13.33	3.57	NA	1.96	0.00	1.43	0.00	0.00	0.00	0.516311	1.000000
K	jcn_only_AA	EPN1	chr19	+	chr19:56204163-56204319	chr19:56204163-56204316		chr19:56204317-56204319	chr19:56204319-56204320		55.70	53.28	61.43	57.89	54.46	38.24	65.77	58.06	70.91	70.37	69.23	58.82	64.06	60.32	61.67	61.11	68.25	64.29	58.06	53.66	63.64	65.00	60.81	58.33	57.27	47.69	46.34	66.67	57.14	57.69	49.12	48.65	52.88	65.91	51.72	52.17	57.67	54.68	-2.99	0.166051	0.663989
N	alternative_acceptor	NXF1	chr11	-	chr11:62561913-62562406;chr11:62561939-62562406	chr11:62561871-62562406		chr11:62561871-62561912;chr11:62561913-62561938	chr11:62561870-62561871;chr11:62561912-62561913		19.83	26.47	16.67	22.03	17.91	10.45	0.00	13.16	11.76	14.29	12.50	20.00	10.00	16.67	9.09	15.38	15.79	12.90	14.06	9.47	13.16	15.28	15.19	14.44	18.00	11.96	17.33	10.42	8.70	13.16	12.00	13.95	13.04	16.84	22.39	20.57	13.55	12.58	-0.97	0.949946	0.989462
K	intron_retention		chr22	+	chr22:38021084-38021803				chr22:38021083-38021084;chr22:38021803-38021804		2.17	0.00	3.17	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	4.76	1.96	0.00	0.00	2.48	0.00	8.33	0.00	2.50	0.00	1.28	NA	4.35	0.00	0.00	0.00	0.00	2.56	0.00	0.98	0.98	0.952671	1.000000
N	cassette	CD44	chr11	+	chr11:35219794-35236398;chr11:35226188-35229651;chr11:35211613-35229651;chr11:35219794-35229651;chr11:35211613-35236398;chr11:35226188-35236398	chr11:35211613-35227661,chr11:35219794-35227661,chr11:35226188-35227661;chr11:35227791-35229651,chr11:35227791-35236398		chr11:35227662-35227790			0.53	0.00	0.79	4.50	1.18	3.74	0.25	0.41	1.64	7.12	0.64	8.04	0.23	0.85	1.77	7.96	0.83	9.03	0.00	0.59	0.79	5.29	1.78	9.52	0.00	0.77	1.91	8.21	2.22	10.30	0.32	0.84	0.00	3.32	1.57	5.93	0.00	0.56	0.56	0.000831	0.099529
N	cassette	CD53	chr1	+	chr1:111437024-111439274;chr1:111435156-111441745;chr1:111437024-111440430;chr1:111435156-111440430;chr1:111437024-111441745	chr1:111435156-111437581,chr1:111437024-111437581;chr1:111437678-111441745,chr1:111437678-111439274,chr1:111437678-111440430		chr1:111437582-111437677			96.71	100.00	97.18	93.02	94.87	NA	98.20	98.40	99.20	98.33	96.96	98.02	97.83	98.54	98.62	97.22	97.09	98.31	95.83	97.13	95.45	95.67	97.51	97.07	100.00	97.17	98.56	97.65	96.10	96.30	97.64	96.54	97.44	96.07	96.84	96.54	98.02	97.41	-0.61	0.418481	0.728056
K	intron_retention	SCN1B	chr19	+	chr19:35530163-35530538				chr19:35530162-35530163;chr19:35530538-35530539		5.06	11.86	4.55	7.35	10.34	8.96	0.00	4.55	1.89	0.00	4.00	0.00	4.17	0.00	1.11	1.61	0.00	3.57	11.11	5.56	6.02	17.39	5.13	11.11	0.00	2.35	3.94	5.00	4.76	3.30	6.58	3.79	6.52	9.09	10.53	11.00	5.34	4.80	-0.54	0.750091	1.000000
K	alternative_last_exon	AC002985.3,HOMER3	chr19	-	chr19:19023856-19042133	chr19:19040435-19042133,chr19:19040444-19042133	chr19:19023793-19023855	chr19:19040012-19040434			100.00	100.00	100.00	100.00	99.25	98.98	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	99.75	96.88	100.00	95.24	99.02	90.91	99.82	96.67	97.44	100.00	99.48	100.00	97.62	96.77	99.40	100.00	98.53	94.74	99.91	98.81	-1.10	0.110819	0.333781
K	alternative_first_exon	CTD-2574D22.6,MVP	chr16	+	chr16:29832713-29841794;chr16:29831224-29841794;chr16:29837414-29841794	chr16:29831832-29841794	chr16:29830876-29831223;chr16:29837263-29837413	chr16:29831715-29831831			77.78	18.52	76.67	NA	6.67	NA	48.48	94.74	79.31	80.65	71.79	96.55	36.36	97.06	86.21	64.00	56.41	96.30	5.26	91.67	36.36	NA	43.48	76.47	0.00	93.75	74.07	66.67	35.00	84.62	87.50	78.26	17.65	82.35	55.56	96.15	18.09	92.71	74.62	0.000093	0.004975
K	intron_retention		chr17	+	chr17:73699452-73699887				chr17:73699451-73699452;chr17:73699887-73699888		1.54	0.00	5.62	1.16	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	1.18	0.00	2.38	2.27	1.67	0.00	2.48	3.75	1.41	2.56	1.85	4.60	4.12	0.00	1.80	3.66	3.87	0.00	1.36	1.36	0.123426	1.000000
N	jcn_only_AA	GAS5	chr1	-	chr1:173833641-173833812	chr1:173833645-173833812		chr1:173833641-173833644	chr1:173833640-173833641		100.00	96.91	95.35	100.00	100.00	99.10	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	97.13	93.33	98.99	100.00	100.00	97.96	95.61	100.00	100.00	100.00	98.84	100.00	93.94	100.00	97.40	100.00	100.00	100.00	97.27	96.97	-0.30	0.632589	0.838192
K	cassette	RPS6KB2	chr11	+	chr11:67197067-67200070	chr11:67197067-67198838;chr11:67198987-67200070		chr11:67198839-67198986			90.48	82.14	97.06	NA	86.96	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	91.67	100.00	100.00	NA	100.00	90.00	NA	100.00	100.00	NA	100.00	90.91	100.00	100.00	92.86	95.45	92.86	100.00	92.86	100.00	7.14	0.254614	0.709176
K	cassette	IRF9	chr14	+	chr14:24634165-24635055	chr14:24634165-24634265;chr14:24634393-24635055		chr14:24634266-24634392			8.72	3.23	10.34	3.85	3.23	6.49	8.33	8.64	5.47	4.55	9.09	6.56	8.11	5.48	4.09	2.94	5.00	5.83	0.00	12.24	8.33	7.84	3.92	10.53	0.00	12.05	8.53	6.98	6.98	5.52	10.34	8.27	0.00	8.75	5.13	9.42	1.61	9.53	7.92	0.011045	0.314700
N	alternative_acceptor	FAM65A,METTL9	chr16	+	chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666550;chr16:21636437-21666547	chr16:21636437-21638265		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		1.49	3.08	2.04	6.67	4.26	15.38	11.27	8.70	1.35	9.76	13.64	13.79	5.66	8.33	2.27	7.14	12.00	13.33	15.79	4.08	4.88	5.88	14.55	8.33	25.00	5.88	0.00	7.41	4.26	11.11	2.38	2.74	16.67	6.38	6.82	6.00	13.53	4.98	-8.55	0.065094	0.584083
K	intron_retention		chr17	+	chr17:7126185-7126451				chr17:7126184-7126185;chr17:7126451-7126452		54.88	35.62	58.82	47.83	58.20	31.58	2.24	8.24	5.56	3.49	6.37	0.00	6.91	9.59	18.32	6.28	6.72	0.51	36.23	47.37	34.55	56.63	64.06	41.84	38.33	45.45	56.57	42.28	49.34	26.50	45.05	62.50	42.11	55.15	64.25	38.89	35.92	45.25	9.33	0.724818	1.000000
N	alternative_acceptor	ZNF143	chr11	+	chr11:64008605-64009890	chr11:64008605-64009855		chr11:64009856-64009890	chr11:64009890-64009891		100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4094497-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4095045-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		3.28	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	1.49	2.44	0.00	0.00	0.00	0.175409	0.663989
K	cassette	YWHAE	chr17	-	chr17:1268353-1303340	chr17:1268353-1273002;chr17:1273036-1303340		chr17:1273003-1273035			4.03	0.00	5.05	4.76	1.85	NA	5.45	6.12	3.74	5.10	4.45	4.82	5.53	3.52	5.32	5.65	4.25	4.90	NA	4.97	6.67	2.94	5.41	6.94	NA	5.52	7.27	4.68	3.18	5.17	5.62	3.31	9.09	4.17	5.61	3.64	5.49	5.24	-0.25	0.979116	0.995133
N	jcn_only_AD	CD37	chr19	+	chr19:49842671-49843507;chr19:49842095-49843507	chr19:49842194-49843507					4.05	6.37	12.24	1.61	3.57	3.33	0.00	3.19	0.00	0.00	2.13	0.00	0.00	4.39	0.00	0.00	0.00	2.56	3.28	6.00	3.64	5.26	4.96	0.00	8.51	4.85	9.30	1.75	2.96	0.93	8.89	15.00	8.84	9.23	10.29	4.90	4.83	4.62	-0.21	0.702347	0.845095
K	intron_retention		chr1	+	chr1:45480509-45480611				chr1:45480508-45480509;chr1:45480611-45480612		2.86	1.42	4.63	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.00	0.00	0.00	0.00	0.00	0.97	2.82	1.41	1.75	0.79	0.00	0.00	0.00	0.97	0.00	0.00	2.67	3.57	5.15	1.36	0.00	2.54	0.96	0.88	1.41	0.53	0.610676	1.000000
N	jcn_only_AA	PCNXL3	chr11	+	chr11:65403275-65403644;chr11:65403275-65403421	chr11:65403275-65403401		chr11:65403402-65403421;chr11:65403422-65403644	chr11:65403421-65403422;chr11:65403644-65403645		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	0.00	4.76	NA	NA	NA	7.14	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	STK19	chr6	+	chr6:31946776-31948227	chr6:31946776-31947190;chr6:31947331-31948227		chr6:31947191-31947330			80.00	100.00	80.95	NA	100.00	83.33	92.31	100.00	100.00	NA	NA	NA	100.00	100.00	90.00	93.33	84.62	NA	NA	100.00	82.35	80.00	100.00	91.67	100.00	90.32	88.89	90.00	90.91	94.12	73.33	88.24	NA	81.82	100.00	84.21	100.00	95.16	-4.84	0.191344	0.709176
N	jcn_only_AA	HDAC10,MAPK12	chr22	-	chr22:50684257-50684338;chr22:50684195-50684338	chr22:50684166-50684338		chr22:50684166-50684194;chr22:50684195-50684256	chr22:50684165-50684166;chr22:50684194-50684195		9.09	7.14	0.00	5.26	8.51	6.06	6.67	NA	0.00	NA	16.67	NA	0.00	NA	8.33	0.00	9.09	10.00	6.12	0.00	7.69	NA	9.09	NA	11.00	10.00	0.00	NA	5.88	0.00	0.00	3.45	7.94	15.38	10.00	8.33	6.90	4.54	-2.36	0.610522	0.820792
K	intron_retention	LGALS9	chr17	+	chr17:25974145-25974295				chr17:25974144-25974145;chr17:25974295-25974296		4.97	3.23	7.81	1.92	3.77	3.01	0.61	0.38	0.57	0.63	0.46	0.30	0.88	0.50	0.93	1.41	0.55	0.32	2.24	3.60	1.53	5.74	5.00	4.65	1.47	3.32	6.10	4.28	4.15	2.74	3.92	7.22	4.42	10.57	6.98	6.92	1.85	3.46	1.60	0.911558	1.000000
K	alternative_acceptor	GMPPA	chr2	+	chr2:220370278-220370436	chr2:220370278-220370416		chr2:220370417-220370436	chr2:220370436-220370437		5.26	0.00	3.33	4.17	4.00	11.29	0.00	0.00	5.00	0.00	0.00	11.76	0.00	0.00	5.71	5.26	0.00	0.00	4.11	4.17	3.57	9.09	5.56	13.79	4.17	0.00	3.12	4.76	8.82	7.69	6.90	8.82	5.88	6.90	3.85	7.32	2.06	2.08	0.03	0.832993	0.940678
K	intron_retention	LST1	chr6	+	chr6:31555096-31555417				chr6:31555095-31555096;chr6:31555417-31555418		16.67	17.72	27.27	5.00	9.68	3.70	2.56	0.00	0.00	1.75	2.63	0.00	3.66	3.12	0.00	1.98	3.19	1.61	10.14	16.67	11.76	0.00	8.16	0.00	8.47	7.69	29.41	6.45	8.97	10.42	NA	0.00	6.17	0.00	16.67	2.33	7.32	7.69	0.37	0.371634	1.000000
K	cassette	AFTPH	chr2	+	chr2:64800203-64812555	chr2:64800203-64806619;chr2:64806681-64812555		chr2:64806620-64806680			85.71	60.00	73.33	NA	83.33	NA	89.66	81.40	75.00	94.12	90.62	100.00	90.00	86.67	82.86	90.00	88.10	80.95	NA	64.71	73.33	70.00	69.70	72.00	NA	79.07	81.08	84.62	90.48	63.16	67.65	65.79	60.00	73.08	67.65	66.67	74.83	80.23	5.41	0.793853	0.936947
K	intron_retention	PHKG2	chr16	+	chr16:30762925-30764552				chr16:30762924-30762925;chr16:30764552-30764553		13.04	18.75	24.39	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.00	0.00	0.00	0.00	4.76	NA	8.33	20.00	11.11	NA	22.22	NA	NA	16.67	27.27	0.00	17.39	NA	0.00	15.00	NA	NA	12.50	9.09	8.16	6.52	-1.64	0.751181	1.000000
N	cassette	SLC4A2	chr7	+	chr7:150772596-150773099	chr7:150772596-150772692;chr7:150772863-150773099		chr7:150772693-150772862			97.22	96.64	96.43	95.45	95.07	97.26	100.00	97.33	95.52	100.00	100.00	100.00	100.00	96.15	96.43	100.00	97.59	100.00	100.00	97.12	96.97	100.00	94.74	100.00	100.00	100.00	97.48	100.00	98.91	95.38	97.35	93.64	91.35	100.00	100.00	100.00	100.00	97.28	-2.72	0.768868	0.929119
K	jcn_only_AA	BUD31,EPHA1-AS1	chr7	+	chr7:99006628-99007659	chr7:99006628-99007656		chr7:99007657-99007659	chr7:99007659-99007660		92.75	85.45	96.72	97.14	91.11	100.00	97.37	100.00	90.48	91.11	95.56	93.75	90.00	95.12	100.00	93.65	95.74	96.97	91.49	95.56	97.62	100.00	92.98	94.87	100.00	94.12	100.00	96.88	100.00	94.87	100.00	93.62	95.00	97.30	94.74	100.00	93.25	95.34	2.09	0.257783	0.663989
N	alternative_acceptor		chr1	+	chr1:161476382-161477388;chr1:161476382-161479429	chr1:161476382-161479609		chr1:161477389-161479429;chr1:161479430-161479609	chr1:161479429-161479430;chr1:161479609-161479610		99.55	95.12	99.27	94.12	100.00	65.22	100.00	99.89	100.00	99.61	100.00	99.09	100.00	99.85	100.00	99.76	100.00	99.49	91.67	99.42	97.01	99.01	99.28	99.32	90.00	99.73	99.84	99.33	100.00	99.36	100.00	99.77	94.44	99.50	100.00	99.25	94.78	99.79	5.01	0.043984	0.570243
K	cassette	PARP6	chr15	-	chr15:72542434-72543547	chr15:72542434-72543185;chr15:72543296-72543547		chr15:72543186-72543295			50.00	28.57	45.31	34.78	25.00	30.00	100.00	71.43	73.33	76.47	82.35	100.00	84.62	76.47	82.35	76.92	80.95	NA	28.57	53.33	60.71	42.31	30.23	50.00	NA	66.67	41.67	52.63	38.71	56.00	53.49	47.06	30.43	38.64	32.35	55.10	30.43	60.08	29.65	0.667557	0.878382
N	jcn_only_AA	LAMTOR4	chr7	+	chr7:99751141-99751472;chr7:99751141-99753198;chr7:99751141-99753225	chr7:99751141-99751489		chr7:99751473-99751489;chr7:99751490-99753198;chr7:99753199-99753225	chr7:99751489-99751490;chr7:99753198-99753199;chr7:99753225-99753226		94.90	95.21	96.39	96.55	95.25	97.73	96.70	98.89	96.00	99.48	98.17	100.00	97.87	100.00	96.25	98.12	97.73	100.00	95.36	91.84	98.15	98.94	97.52	97.33	93.19	90.74	93.53	98.98	97.01	97.88	93.48	93.67	93.63	96.43	95.21	97.95	95.28	94.19	-1.09	0.841624	0.938038
K	intron_retention	GLT8D1	chr3	-	chr3:52729319-52729436				chr3:52729318-52729319;chr3:52729436-52729437		21.05	16.67	17.14	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	9.09	0.00	NA	0.00	11.76	4.35	NA	31.58	NA	NA	NA	16.13	NA	16.67	NA	18.18	5.71	7.69	NA	16.67	10.00	0.00	14.97	14.97	0.544411	1.000000
N	jcn_only_AD	FGD2	chr6	+	chr6:36985433-36988316;chr6:36983604-36988316;chr6:36985398-36988316	chr6:36983637-36988316		chr6:36983604-36983636;chr6:36983637-36985397;chr6:36985398-36985432	chr6:36983603-36983604;chr6:36983636-36983637;chr6:36985397-36985398		97.73	100.00	NA	NA	NA	NA	100.00	98.69	96.30	NA	100.00	100.00	98.00	100.00	100.00	92.86	100.00	100.00	NA	96.10	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.87	100.00	NA	100.00	100.00	96.00	100.00	98.28	-1.72	0.200778	0.657607
N	cassette	LAMTOR2	chr1	+	chr1:156025467-156028105;chr1:156025217-156028105	chr1:156025467-156027768,chr1:156025217-156027768;chr1:156027859-156028105		chr1:156027769-156027858			89.11	85.81	88.24	90.91	87.61	91.45	98.62	100.00	100.00	98.25	100.00	100.00	97.22	98.36	97.47	94.62	96.91	97.96	88.51	87.18	92.31	93.88	90.84	92.00	90.11	91.25	94.23	98.11	96.85	95.40	93.27	87.60	82.76	92.86	90.83	93.75	89.31	92.26	2.95	0.434794	0.741898
N	cassette	HNRNPD	chr4	-	chr4:83276555-83277954;chr4:83276555-83277948	chr4:83276555-83277689;chr4:83277837-83277954,chr4:83277837-83277948		chr4:83277690-83277836			29.79	23.31	35.26	25.93	33.33	26.92	35.88	24.30	31.88	34.19	31.74	34.62	33.66	28.71	30.13	39.33	34.48	35.37	24.58	26.88	27.07	34.78	35.32	31.53	22.09	25.00	37.50	26.95	31.98	25.00	22.08	31.07	26.61	36.94	37.50	37.14	25.59	25.94	0.34	0.568779	0.829613
N	cassette	CC2D1A	chr19	+	chr19:14037891-14038705	chr19:14037891-14037987;chr19:14038079-14038705		chr19:14037988-14038078			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.74	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	93.55	100.00	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	coord_cassette	FCGRT	chr19	+	chr19:50016731-50028713	chr19:50016731-50017138;chr19:50017391-50017467;chr19:50017744-50028713		chr19:50017139-50017390;chr19:50017468-50017743			100.00	93.10	98.63	98.41	97.29	96.08	99.43	100.00	100.00	100.00	99.23	99.63	99.61	99.43	100.00	99.26	98.93	98.85	94.92	96.19	100.00	97.03	97.73	98.43	92.57	100.00	98.13	98.99	99.04	99.15	98.76	98.31	95.39	98.65	97.47	98.97	95.16	99.72	4.56	0.051190	0.643829
K	jcn_only_AA	EML3	chr11	-	chr11:62370252-62370620	chr11:62370362-62370620		chr11:62370252-62370361	chr11:62370251-62370252		96.43	97.09	95.00	94.29	98.36	97.30	95.65	93.33	100.00	NA	91.67	NA	90.00	76.92	88.24	88.24	90.00	NA	97.06	100.00	95.16	100.00	97.83	100.00	97.37	100.00	95.65	87.50	94.12	94.44	96.55	100.00	94.87	97.37	100.00	97.62	96.36	96.49	0.14	0.706752	0.870361
K	intron_retention		chr1	+	chr1:151373065-151373239				chr1:151373064-151373065;chr1:151373239-151373240		8.79	3.42	15.64	4.62	4.27	1.86	0.87	2.31	2.13	1.29	2.03	0.61	1.13	2.56	2.38	0.96	1.98	1.30	2.13	9.54	2.87	11.91	9.39	12.55	1.30	9.91	10.97	4.00	4.97	5.57	10.20	11.89	1.89	10.82	9.43	10.83	1.59	9.16	7.57	0.030655	1.000000
N	jcn_only_AA	LYL1	chr19	-	chr19:13211543-13211650	chr19:13211563-13211650		chr19:13211543-13211562	chr19:13211542-13211543		90.00	94.63	92.59	NA	92.25	NA	92.78	100.00	100.00	NA	91.14	NA	98.68	84.62	NA	NA	91.94	NA	93.04	89.66	88.00	NA	90.38	NA	91.74	87.10	92.31	81.82	89.39	NA	86.67	76.47	87.50	90.91	87.88	NA	92.91	88.38	-4.53	0.238204	0.663989
N	cassette	RP11-637O19.3,TMEM14B	chr6	+	chr6:10749502-10755374;chr6:10749502-10770309;chr6:10749502-10751365;chr6:10749502-10756699	chr6:10749502-10749854;chr6:10749932-10770309,chr6:10749932-10756699,chr6:10749932-10751365,chr6:10749932-10755374		chr6:10749855-10749931			100.00	97.06	100.00	100.00	95.12	NA	98.10	100.00	97.56	96.36	98.95	98.00	97.39	90.48	98.00	97.70	98.75	100.00	86.67	95.00	92.31	100.00	98.46	100.00	100.00	100.00	96.55	100.00	100.00	96.15	NA	96.55	100.00	100.00	98.04	100.00	97.75	100.00	2.25	0.846048	0.949198
K	intron_retention		chr19	+	chr19:48257889-48257965				chr19:48257888-48257889;chr19:48257965-48257966		8.16	1.61	4.65	1.37	2.02	4.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	5.56	1.21	1.56	1.57	3.23	1.29	2.22	1.95	2.94	1.52	2.78	10.45	3.94	2.46	3.39	4.17	3.23	1.27	3.89	2.62	0.322074	1.000000
K	cassette	ACOT8	chr20	-	chr20:44477315-44483797	chr20:44477315-44482561;chr20:44482624-44483797		chr20:44482562-44482623			10.00	0.00	20.00	NA	15.38	NA	0.00	0.00	NA	NA	5.56	NA	7.14	NA	0.00	0.00	10.00	NA	8.33	10.00	6.67	NA	0.00	NA	8.33	0.00	5.26	NA	0.00	NA	10.00	7.69	9.52	NA	7.14	0.00	7.73	10.00	2.27	0.886603	0.966627
N	alternative_donor	ZNF710	chr15	+	chr15:90617523-90622891;chr15:90619479-90622891	chr15:90617915-90622891		chr15:90617523-90617914;chr15:90617915-90619478	chr15:90617522-90617523;chr15:90617914-90617915		2.50	7.50	1.89	NA	7.69	NA	3.39	1.61	0.00	4.76	4.35	4.92	3.39	1.82	2.13	7.14	4.05	6.25	NA	2.50	NA	NA	3.45	3.85	27.27	0.00	4.44	0.00	4.76	NA	0.00	0.00	20.00	0.00	3.12	2.44	7.50	1.72	-5.79	0.086356	0.475124
K	intron_retention	CYHR1	chr8	-	chr8:145676154-145677741				chr8:145676153-145676154;chr8:145677741-145677742		20.75	24.53	12.00	NA	15.62	NA	14.29	20.83	14.81	13.33	8.00	NA	14.71	13.33	9.09	25.00	14.81	NA	11.54	11.63	9.76	NA	12.90	NA	18.18	9.80	7.32	16.67	16.67	NA	21.95	16.18	21.28	15.00	12.50	19.23	16.45	17.04	0.59	0.873679	1.000000
K	intron_retention	TYK2	chr19	-	chr19:10464323-10464717				chr19:10464322-10464323;chr19:10464717-10464718		42.11	34.00	56.67	NA	38.46	NA	3.12	9.52	8.33	NA	6.25	NA	13.51	9.09	19.57	7.69	9.68	NA	33.33	38.89	26.32	36.36	50.00	25.00	65.00	44.12	41.33	43.75	40.00	41.67	37.04	45.31	31.58	43.48	51.52	48.00	32.45	37.97	5.51	0.932201	1.000000
N	alternative_acceptor	H2AFY	chr5	-	chr5:134696289-134705095;chr5:134696471-134705095;chr5:134696295-134705095	chr5:134696298-134705095		chr5:134696289-134696294;chr5:134696295-134696297;chr5:134696298-134696470	chr5:134696288-134696289;chr5:134696294-134696295;chr5:134696297-134696298		27.94	40.82	35.38	39.13	28.72	41.18	34.08	37.04	33.33	33.12	34.39	33.58	33.33	31.03	35.71	38.33	34.36	33.33	33.33	37.21	39.13	31.88	33.72	36.99	38.46	36.36	34.15	32.31	33.85	30.56	28.57	30.23	28.00	31.91	33.33	29.25	33.70	33.70	-0.01	0.533378	0.815053
N	alternative_donor	P3H1	chr1	-	chr1:43212524-43212923;chr1:43212524-43212942	chr1:43212524-43212741		chr1:43212742-43212923;chr1:43212924-43212942	chr1:43212923-43212924;chr1:43212942-43212943		7.41	4.29	0.00	9.09	5.41	11.11	0.00	NA	6.25	0.00	0.00	NA	4.55	NA	0.00	0.00	7.69	NA	2.86	5.88	4.76	16.67	7.69	NA	2.78	0.00	7.41	0.00	7.69	14.29	4.55	4.17	3.28	0.00	4.17	5.56	3.07	5.21	2.15	0.434157	0.695860
N	cassette	JMJD6	chr17	-	chr17:74716581-74717879;chr17:74716581-74717917	chr17:74716581-74717344;chr17:74717439-74717879,chr17:74717439-74717917		chr17:74717345-74717438			15.56	25.00	16.39	25.71	10.20	26.67	6.25	22.22	3.23	6.82	0.00	11.11	7.14	17.24	12.50	6.82	3.45	0.00	21.21	17.14	13.11	21.74	10.64	21.05	33.33	16.67	12.50	12.50	10.34	10.26	24.00	22.64	20.00	14.63	19.23	23.08	20.61	17.19	-3.42	0.997168	0.999100
K	alternative_last_exon	SLIRP	chr14	+	chr14:78182223-78186858;chr14:78182223-78226995	chr14:78182223-78183844,chr14:78182223-78183838,chr14:78182223-78183822	chr14:78186859-78187450;chr14:78226996-78227447	chr14:78183845-78183937			88.89	98.10	86.36	98.18	96.55	99.00	90.91	66.67	88.10	93.75	94.55	89.74	92.73	80.95	89.47	94.29	93.42	95.65	99.20	76.00	98.80	93.75	92.86	86.67	100.00	80.00	87.50	93.94	92.31	94.12	88.24	89.19	99.14	87.18	90.20	82.61	98.62	80.47	-18.15	0.002902	0.103535
N	jcn_only_AD	HNRNPH3	chr10	+	chr10:70098427-70098896;chr10:70098445-70098896	chr10:70098400-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		22.45	23.81	16.30	23.81	23.26	NA	25.27	20.00	29.29	39.88	29.71	35.04	26.36	30.14	23.91	44.70	31.68	40.45	21.43	15.00	18.18	20.73	17.98	24.36	50.00	13.85	15.58	30.26	18.26	26.14	6.58	12.26	19.05	22.78	24.59	14.89	24.54	17.50	-7.04	0.122273	0.657607
K	alternative_acceptor	DNAJC4	chr11	+	chr11:63999437-63999865;chr11:63999437-63999901	chr11:63999437-63999981		chr11:63999866-63999901;chr11:63999902-63999981	chr11:63999901-63999902;chr11:63999981-63999982		0.00	4.76	4.76	0.00	0.00	9.09	2.94	NA	9.09	5.56	3.33	6.25	3.12	9.09	11.76	0.00	0.00	14.29	0.00	0.00	5.56	6.67	7.89	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	2.72	0.00	-2.72	0.699417	0.886757
K	cassette	ISY1	chr3	-	chr3:128853798-128859210	chr3:128853798-128855973;chr3:128856040-128859210		chr3:128855974-128856039			2.70	0.00	2.25	0.00	0.00	0.00	0.00	2.04	3.70	2.22	1.85	0.00	2.78	2.78	2.08	3.57	3.28	3.23	0.00	2.22	2.50	0.00	4.35	3.12	0.00	0.00	6.38	0.00	0.00	0.00	0.00	2.67	0.00	2.08	1.85	3.08	0.00	2.13	2.13	0.129402	0.709176
K	cassette	DERL2	chr17	-	chr17:5383465-5384420	chr17:5383465-5383706;chr17:5383864-5384420		chr17:5383707-5383863			85.37	84.85	94.34	95.24	91.18	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	85.00	93.55	89.19	85.71	93.94	91.43	100.00	97.22	92.16	100.00	100.00	94.87	89.66	81.97	60.87	88.24	87.80	92.00	92.50	95.38	2.88	0.416521	0.728056
K	jcn_only_AA	WDR45	chrX	-	chrX:48933113-48933203;chrX:48933083-48933203	chrX:48933125-48933203		chrX:48933083-48933112;chrX:48933113-48933124	chrX:48933082-48933083;chrX:48933112-48933113		94.44	98.11	95.16	100.00	95.92	96.30	100.00	97.73	100.00	100.00	100.00	100.00	100.00	97.22	95.92	95.24	100.00	100.00	100.00	100.00	97.87	94.12	95.12	100.00	100.00	100.00	96.43	100.00	97.56	97.67	98.11	97.33	97.30	100.00	96.00	98.36	100.00	97.92	-2.08	0.214095	0.663989
N	alternative_donor	CALHM2	chr10	-	chr10:105207326-105209325;chr10:105207326-105209143	chr10:105207326-105209156		chr10:105209144-105209156;chr10:105209157-105209325	chr10:105209156-105209157;chr10:105209325-105209326		21.43	21.43	22.22	NA	23.64	NA	29.73	42.86	29.41	20.00	31.82	NA	26.74	42.86	0.00	17.24	24.59	NA	26.67	23.08	18.18	NA	31.33	NA	0.00	NA	27.27	NA	26.32	NA	NA	45.45	30.00	27.27	33.96	NA	26.70	32.97	6.27	0.226336	0.597576
K	jcn_only_AA	FDXR	chr17	-	chr17:72868233-72868990	chr17:72868259-72868990		chr17:72868233-72868258	chr17:72868232-72868233		100.00	100.00	91.30	NA	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	100.00	93.33	NA	NA	NA	NA	100.00	91.67	NA	NA	NA	90.91	95.16	94.74	100.00	92.31	NA	100.00	100.00	0.00	0.649925	0.844334
N	alternative_acceptor	OGFR	chr20	+	chr20:61436383-61438888;chr20:61436383-61438033	chr20:61436383-61438893		chr20:61438034-61438888;chr20:61438889-61438893	chr20:61438888-61438889;chr20:61438893-61438894		5.75	0.00	0.00	0.00	0.00	NA	0.00	1.64	3.28	6.15	2.86	4.71	7.69	6.99	6.94	5.75	4.26	2.86	16.67	5.62	0.00	6.25	3.12	4.00	14.29	7.89	0.00	2.82	0.00	4.07	4.71	4.41	0.00	2.86	0.00	2.52	3.85	5.69	1.84	0.766819	0.913895
K	intron_retention	CHIT1	chr1	-	chr1:203186994-203188343				chr1:203186993-203186994;chr1:203188343-203188344		0.00	0.00	0.00	NA	NA	NA	1.06	0.00	0.30	1.08	0.89	0.65	1.64	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.71	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	11.11	4.55	0.00	6.67	4.76	1.06	0.00	-1.06	0.286270	1.000000
N	alternative_donor	ZRSR2	chrX	+	chrX:15838440-15840853	chrX:15840715-15840853		chrX:15838440-15840714	chrX:15838439-15838440		8.33	1.56	4.76	NA	0.00	0.00	NA	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	7.14	0.00	NA	0.00	NA	2.86	7.14	7.14	NA	5.26	0.00	0.00	4.76	0.00	9.09	9.09	10.00	0.00	7.14	7.14	0.123446	0.538772
K	intron_retention	TMEM205	chr19	-	chr19:11456092-11456195				chr19:11456091-11456092;chr19:11456195-11456196		4.69	12.84	8.29	10.00	8.94	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	2.40	0.00	1.25	0.00	6.45	4.62	7.39	2.53	4.80	1.23	13.92	7.14	10.40	1.89	5.61	5.43	8.89	8.72	8.55	4.94	7.32	3.62	7.50	4.66	-2.84	0.984690	1.000000
N	cassette	NQO2	chr6	+	chr6:3002521-3006701;chr6:3000320-3006701;chr6:3004024-3006701;chr6:3004494-3006701	chr6:3000320-3004728,chr6:3002521-3004728,chr6:3004494-3004728,chr6:3004024-3004728;chr6:3004886-3006701		chr6:3004729-3004885			6.41	11.58	15.53	8.96	10.43	10.00	11.11	14.29	20.45	9.68	4.88	8.33	10.00	16.28	27.14	9.80	5.88	7.69	12.90	17.24	23.08	11.36	10.26	9.09	14.29	16.67	8.43	6.06	7.96	7.55	42.11	23.40	13.33	18.46	16.67	17.91	12.24	16.48	4.24	0.238389	0.709176
K	alternative_last_exon	NMNAT1	chr1	+	chr1:10041229-10044004,chr1:10041229-10045193,chr1:10041229-10056669,chr1:10041229-10056768;chr1:10041229-10042358	chr1:10041229-10041313	chr1:10042359-10045556	chr1:10041314-10041824			13.33	14.29	4.00	NA	7.14	NA	5.56	NA	NA	NA	7.14	NA	5.00	NA	20.00	NA	9.09	NA	5.00	8.33	15.38	NA	5.26	NA	20.00	9.09	5.26	NA	6.67	NA	16.67	5.88	6.67	7.69	12.50	9.09	6.12	11.21	5.10	0.471012	0.619765
K	alternative_acceptor	IFFO1	chr12	-	chr12:6657992-6658641	chr12:6658016-6658641		chr12:6657992-6658015	chr12:6657991-6657992		33.33	35.14	33.33	NA	52.17	NA	29.03	NA	7.69	NA	33.33	NA	32.69	45.45	15.38	72.73	38.10	NA	38.46	25.00	NA	NA	41.82	NA	50.00	40.00	25.81	37.50	47.92	NA	NA	17.65	18.75	35.29	37.78	40.00	33.91	36.66	2.75	0.760477	0.911059
K	intron_retention	RNASEH2C	chr11	-	chr11:65487636-65487712				chr11:65487635-65487636;chr11:65487712-65487713		8.57	0.00	10.00	0.00	1.54	1.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	1.16	0.00	0.00	NA	1.75	0.00	0.00	0.00	0.00	0.00	30.77	8.89	5.63	0.00	0.00	3.03	0.00	4.29	4.29	0.406263	1.000000
N	cassette	RBM42	chr19	+	chr19:36122308-36123978;chr19:36122308-36123999;chr19:36122308-36124002	chr19:36122308-36123837;chr19:36123904-36124002,chr19:36123904-36123978,chr19:36123904-36123999		chr19:36123838-36123903			57.89	50.00	58.00	65.52	57.63	71.43	76.19	77.78	69.44	82.35	76.92	90.00	81.82	82.76	62.79	80.85	85.53	88.64	51.85	64.71	63.41	66.67	56.72	73.68	69.57	59.46	61.82	75.00	54.10	71.43	72.97	67.92	48.72	62.16	61.11	79.55	60.71	68.84	8.13	0.413111	0.727434
K	jcn_only_AD	FAM50A	chrX	+	chrX:153672694-153673980	chrX:153673258-153673980		chrX:153672694-153673257	chrX:153672693-153672694		0.00	6.25	0.00	4.00	1.89	5.88	1.61	0.00	0.00	4.17	1.25	0.00	3.03	0.00	0.00	2.67	0.00	2.04	0.00	0.00	0.00	3.28	3.94	2.04	0.00	0.00	5.36	2.78	2.17	3.57	7.32	7.46	4.49	5.32	6.59	5.21	2.32	0.00	-2.32	0.419633	0.681153
N	jcn_only_AD	SEC11C	chr18	+	chr18:56822614-56822919;chr18:56819845-56822919	chr18:56819918-56822919		chr18:56819845-56819917;chr18:56819918-56822613	chr18:56819844-56819845;chr18:56819917-56819918		95.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	97.44	98.81	98.21	100.00	98.86	100.00	97.62	98.75	98.35	98.95	96.83	98.08	98.84	97.67	98.44	97.70	100.00	100.00	98.11	97.22	100.00	100.00	95.35	100.00	97.25	95.35	100.00	99.27	99.43	99.04	-0.39	0.525502	0.754861
N	cassette	UBL5	chr19	+	chr19:9939066-9939512	chr19:9939066-9939267;chr19:9939352-9939512		chr19:9939268-9939351			98.90	98.80	98.21	97.54	97.30	97.79	99.35	99.15	98.10	98.26	97.69	99.19	99.43	98.20	95.10	99.15	98.40	98.10	93.58	95.26	95.34	94.34	96.09	96.49	97.24	98.65	97.30	97.24	97.75	96.22	97.73	96.96	95.91	97.95	97.14	97.39	98.02	98.43	0.41	0.604630	0.852612
N	jcn_only_AA	ERGIC3	chr20	+	chr20:42089239-42089348;chr20:42089239-42091983	chr20:42089239-42089342		chr20:42089343-42089348;chr20:42089349-42091983	chr20:42089348-42089349;chr20:42091983-42091984		98.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.51	100.00	100.00	100.00	100.00	100.00	99.58	98.54	99.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	98.88	96.36	96.47	87.18	98.58	100.00	98.53	100.00	100.00	0.00	0.595445	0.812401
N	cassette	IRF3	chr19	-	chr19:50164086-50165681;chr19:50164102-50165681;chr19:50163091-50165681	chr19:50164086-50165204,chr19:50164102-50165204,chr19:50163091-50165204;chr19:50165586-50165681		chr19:50165205-50165585			100.00	97.50	100.00	100.00	97.10	92.86	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.97	NA	98.98	93.55	95.60	NA	100.00	NA	96.95	96.55	96.30	100.00	95.16	100.00	100.00	98.51	95.45	100.00	94.74	100.00	98.24	100.00	1.76	0.882825	0.963803
N	jcn_only_AD	CREB1	chr2	+	chr2:208442360-208461637;chr2:208435046-208461637	chr2:208442380-208461637					100.00	NA	97.92	NA	100.00	100.00	100.00	97.62	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	cassette	STK40	chr1	-	chr1:36826942-36851323;chr1:36826942-36833448;chr1:36826942-36833452	chr1:36826942-36828159;chr1:36828258-36833448,chr1:36828258-36833452,chr1:36828258-36851323		chr1:36828160-36828257			0.00	0.00	0.00	NA	NA	NA	1.16	0.00	0.00	2.99	0.62	2.52	1.67	3.23	3.57	4.26	1.85	5.80	NA	0.00	NA	3.23	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.89	0.00	1.15	0.58	0.00	-0.58	0.810819	0.936947
N	jcn_only_AA	FAM195B	chr17	-	chr17:79782282-79782374;chr17:79782292-79782374	chr17:79782267-79782374		chr17:79782267-79782281;chr17:79782282-79782291	chr17:79782266-79782267;chr17:79782281-79782282		0.00	0.00	6.25	4.71	3.51	0.00	0.00	0.00	6.52	2.59	0.00	2.63	0.00	0.00	3.39	2.27	2.47	0.00	3.45	11.11	0.00	3.16	1.91	3.06	3.08	0.00	0.00	5.31	2.59	3.83	2.38	0.00	4.40	6.58	7.69	5.34	1.54	0.00	-1.54	0.836866	0.935389
K	alternative_last_exon	DYRK4,NDUFA9,RP11-234B24.6	chr12	+	chr12:4768344-4771361,chr12:4768344-4771677;chr12:4768344-4777622	chr12:4768344-4771698	chr12:4777623-4777690	chr12:4771699-4771809			100.00	100.00	93.18	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	95.24	NA	100.00	100.00	94.29	100.00	98.89	100.00	97.87	100.00	100.00	100.00	97.71	100.00	100.00	0.00	0.363217	0.535374
K	cassette	RP11-26J3.4	chr8	-	chr8:80831384-80915233	chr8:80831384-80870491;chr8:80870671-80915233		chr8:80870492-80870670			0.00	0.00	3.57	4.17	0.00	0.00	2.94	0.00	0.00	0.00	1.20	2.70	2.63	0.00	0.00	4.55	2.41	4.26	0.00	0.00	0.00	0.00	2.38	4.55	0.00	0.00	0.00	7.69	1.82	4.76	7.69	2.44	0.00	0.00	2.38	3.70	0.00	0.00	0.00	0.809350	0.936947
K	intron_retention	LYPLA2	chr1	+	chr1:24119707-24120194				chr1:24119706-24119707;chr1:24120194-24120195		1.85	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	NA	0.00	5.36	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	2.86	0.00	0.93	0.93	0.428744	1.000000
K	alternative_first_exon	RPL27	chr17	+	chr17:41150583-41150765;chr17:41150433-41150765	chr17:41150489-41150765	chr17:41150290-41150432	chr17:41150451-41150488			98.01	96.94	98.81	99.59	99.40	99.60	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.77	100.00	100.00	97.04	97.16	98.79	99.49	98.91	99.77	93.27	96.84	97.52	99.61	99.76	99.74	98.48	98.89	97.79	99.16	99.22	99.51	97.42	98.25	0.83	0.456256	0.603071
K	alternative_acceptor	ZNF467	chr7	-	chr7:149461768-149466178	chr7:149463329-149466178		chr7:149461768-149463328	chr7:149461767-149461768		89.19	68.12	87.50	NA	33.33	NA	85.11	92.31	NA	NA	68.75	NA	86.49	86.21	91.67	NA	78.26	NA	43.75	89.47	68.42	NA	71.43	NA	64.86	92.31	89.47	NA	NA	NA	83.33	86.36	60.61	NA	NA	NA	66.49	89.33	22.84	0.024391	0.546324
N	alternative_acceptor	CDC34	chr19	+	chr19:537148-541345;chr19:537148-538677;chr19:537148-541342	chr19:537148-541338		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		76.92	90.48	78.57	89.47	87.50	91.67	94.44	90.91	94.12	90.00	85.00	NA	83.33	100.00	80.00	90.91	82.61	NA	88.89	83.33	92.31	82.35	84.62	NA	86.84	71.43	84.62	87.50	71.43	84.62	73.68	72.00	82.14	90.00	82.35	80.00	87.87	80.12	-7.74	0.343402	0.709013
K	intron_retention	ARHGEF40	chr14	+	chr14:21555623-21556126				chr14:21555622-21555623;chr14:21556126-21556127		4.44	0.00	9.38	NA	3.33	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	3.85	0.00	NA	10.34	NA	NA	3.57	0.00	NA	8.00	NA	0.00	6.25	0.00	NA	7.69	NA	0.00	1.78	1.78	0.475148	1.000000
N	jcn_only_AD	FCGR2A	chr1	+	chr1:161479530-161479609;chr1:161476451-161479609;chr1:161476498-161479609	chr1:161476382-161479609		chr1:161476382-161476450;chr1:161476451-161476497;chr1:161476498-161479529	chr1:161476381-161476382;chr1:161476450-161476451;chr1:161476497-161476498		99.62	100.00	99.76	94.12	100.00	93.75	99.74	99.89	99.16	96.95	99.62	96.99	99.43	99.56	100.00	98.33	100.00	98.25	100.00	99.81	100.00	98.52	100.00	97.77	NA	99.59	99.69	99.33	99.31	97.79	100.00	99.54	100.00	100.00	100.00	97.78	100.00	99.72	-0.28	0.530267	0.755474
K	intron_retention	ARAP1	chr11	-	chr11:72424289-72425196				chr11:72424288-72424289;chr11:72425196-72425197		0.83	8.11	3.93	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	1.25	0.00	0.00	0.00	5.00	13.46	1.06	1.97	0.00	0.00	NA	3.45	1.15	0.00	1.43	1.96	0.00	4.05	0.95	-3.11	0.383803	1.000000
K	cassette	NASP	chr1	+	chr1:46072264-46078840	chr1:46072264-46072992;chr1:46074010-46078840		chr1:46072993-46074009			26.00	16.00	19.67	10.00	11.11	NA	21.74	38.18	19.05	14.29	12.82	18.75	29.89	39.62	33.33	25.00	17.33	23.33	NA	23.40	8.33	12.50	19.23	11.11	NA	43.14	27.69	25.00	29.63	15.38	11.11	12.24	10.00	23.08	30.00	20.00	18.87	32.09	13.22	0.136973	0.709176
K	intron_retention		chr5	-	chr5:176729498-176729577				chr5:176729497-176729498;chr5:176729577-176729578		1.55	2.09	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.26	2.62	0.00	0.00	7.32	0.00	2.54	2.27	2.22	0.00	0.00	5.10	3.63	2.52	2.70	0.00	1.85	0.00	1.90	1.90	0.530978	1.000000
K	intron_retention	AURKAIP1	chr1	-	chr1:1310171-1310533				chr1:1310170-1310171;chr1:1310533-1310534		22.50	26.67	15.22	33.33	22.92	36.67	11.43	11.11	9.09	16.13	12.82	5.56	12.50	10.71	11.43	19.64	11.90	6.25	18.67	20.83	15.56	34.48	24.32	40.00	28.89	16.13	20.00	20.00	21.31	22.86	36.00	22.22	23.19	35.00	21.05	20.59	20.93	18.48	-2.45	0.761053	1.000000
K	alternative_acceptor	INPP5D	chr2	+	chr2:233986968-233990457	chr2:233986968-233990454		chr2:233990455-233990457	chr2:233990457-233990458		46.67	56.25	NA	NA	NA	NA	35.09	48.00	16.67	NA	39.13	NA	36.36	35.71	NA	NA	38.24	NA	NA	60.00	NA	NA	NA	NA	15.79	38.46	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	35.73	46.67	10.95	0.340179	0.709013
N	alternative_acceptor	CECR1	chr22	-	chr22:17666825-17669228;chr22:17663631-17669228	chr22:17663652-17669228		chr22:17663631-17663651;chr22:17663652-17666824	chr22:17663630-17663631;chr22:17663651-17663652		97.96	89.47	100.00	NA	90.00	NA	99.06	99.52	100.00	100.00	98.44	99.62	98.82	99.32	100.00	98.90	99.50	98.84	80.00	98.51	NA	98.98	98.16	100.00	94.12	98.94	96.77	100.00	98.41	100.00	93.75	100.00	NA	100.00	99.30	99.59	94.12	98.72	4.60	0.185114	0.660713
N	alternative_donor	OS9	chr12	+	chr12:58112205-58112775;chr12:58112166-58112775	chr12:58112160-58112775		chr12:58112160-58112165;chr12:58112166-58112204	chr12:58112159-58112160;chr12:58112165-58112166		31.56	26.22	27.42	25.00	27.92	23.93	17.45	19.30	15.56	16.16	16.78	19.31	29.79	28.62	25.37	34.98	29.19	29.18	22.58	20.89	31.48	24.83	19.14	18.05	20.69	18.27	18.10	20.11	17.01	17.29	22.14	21.49	22.27	17.79	22.37	20.97	22.42	21.52	-0.91	0.918292	0.981916
K	alternative_first_exon	NADK	chr1	-	chr1:1696886-1710184;chr1:1696886-1711343	chr1:1696886-1709727	chr1:1710185-1710229;chr1:1711344-1711508	chr1:1709728-1709909			4.30	23.08	3.85	NA	NA	NA	6.90	0.00	0.00	29.41	21.88	4.17	13.70	0.00	1.65	42.86	47.62	7.14	NA	2.50	18.18	NA	24.00	8.33	9.09	0.00	2.78	23.53	15.38	3.85	0.00	1.82	NA	26.09	21.05	7.94	11.39	0.00	-11.39	0.040722	0.151012
N	jcn_only_AA	MILR1	chr17	+	chr17:62463763-62469521;chr17:62463763-62464426;chr17:62463763-62492438;chr17:62463763-62471431	chr17:62463763-62488401		chr17:62464427-62469521;chr17:62469522-62471431;chr17:62471432-62488401;chr17:62488402-62492438	chr17:62469521-62469522;chr17:62471431-62471432;chr17:62488401-62488402;chr17:62492438-62492439		NA	0.00	NA	NA	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	30.00	6.25	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	1.73	1.73	0.639930	0.838192
N	alternative_acceptor	LIPA	chr10	-	chr10:91003499-91005432;chr10:90988156-91005432;chr10:90991789-91005432;chr10:90999843-91005432	chr10:90996409-91005432		chr10:90988156-90991788;chr10:90991789-90996408;chr10:90996409-90999842;chr10:90999843-91003498	chr10:90988155-90988156;chr10:90991788-90991789;chr10:90996408-90996409;chr10:90999842-90999843		0.00	0.00	0.00	NA	0.00	NA	0.02	0.00	0.00	0.04	0.08	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.27	0.00	0.00	0.00	6.25	0.12	0.09	0.07	0.00	0.00	0.00	0.361535	0.709013
K	intron_retention	TM2D2	chr8	-	chr8:38851180-38852836				chr8:38851179-38851180;chr8:38852836-38852837		2.15	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.00	1.16	0.00	7.14	3.26	2.22	5.56	3.45	2.08	0.00	1.94	1.01	4.17	2.70	1.75	4.05	5.33	4.76	3.10	4.03	1.98	0.00	2.04	2.04	0.638412	1.000000
N	alternative_acceptor	PLXND1	chr3	-	chr3:129286649-129288685;chr3:129286626-129288685	chr3:129286879-129288685		chr3:129286626-129286648;chr3:129286649-129286878	chr3:129286625-129286626;chr3:129286648-129286649		3.33	1.47	4.58	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.16	3.45	1.52	0.00	2.08	0.00	0.00	2.94	0.00	0.00	2.94	0.00	12.50	4.76	3.28	0.00	2.56	NA	NA	6.67	NA	0.00	1.69	0.00	1.16	3.33	2.17	0.960807	0.990505
K	coord_cassette	TYK2	chr19	-	chr19:10461645-10464717	chr19:10461645-10463109;chr19:10463228-10463601;chr19:10463775-10464203;chr19:10464323-10464717		chr19:10463110-10463227;chr19:10463602-10463774;chr19:10464204-10464322			91.67	88.37	90.91	NA	90.32	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	81.82	88.46	94.29	NA	87.50	91.67	100.00	100.00	100.00	91.67	95.65	100.00	95.45	95.65	89.29	93.75	91.67	100.00	94.65	97.72	3.08	0.497851	0.715661
N	jcn_only_AD	MAP2K3	chr17	+	chr17:21205515-21206494	chr17:21205572-21206494		chr17:21205515-21205571	chr17:21205514-21205515		100.00	82.14	100.00	100.00	98.02	100.00	100.00	100.00	100.00	99.23	99.20	99.57	100.00	100.00	100.00	99.53	100.00	100.00	NA	97.73	100.00	98.55	97.33	98.17	NA	100.00	100.00	100.00	98.62	98.35	97.45	96.74	100.00	97.59	95.71	98.06	100.00	100.00	0.00	0.473470	0.721034
N	jcn_only_AA	ANAPC2	chr9	-	chr9:140078235-140079364	chr9:140078244-140079364		chr9:140078235-140078243	chr9:140078234-140078235		100.00	100.00	100.00	NA	100.00	NA	100.00	83.33	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	95.83	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.67	100.00	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention	INTS8	chr8	+	chr8:95888376-95888448				chr8:95888375-95888376;chr8:95888448-95888449		0.00	2.38	8.77	0.00	6.35	8.70	0.00	0.00	0.00	NA	3.12	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	3.39	0.00	2.56	0.00	0.00	4.17	5.00	0.00	5.13	0.00	5.88	4.08	4.55	6.25	5.56	4.00	0.00	0.00	0.00	0.873531	1.000000
N	alternative_donor	NAGK	chr2	+	chr2:71295843-71297631;chr2:71295972-71297631;chr2:71295467-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71296192-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		6.06	6.67	5.88	NA	NA	NA	1.16	0.96	0.00	0.00	1.39	0.00	1.52	3.12	0.00	0.00	0.00	0.00	0.00	4.65	0.00	0.00	0.00	11.11	11.11	6.35	4.76	0.00	0.00	0.00	0.00	5.26	0.00	8.33	5.26	4.00	1.34	3.89	2.55	0.958942	0.985822
K	jcn_only_AA	MAP7D1	chr1	+	chr1:36643803-36644019;chr1:36643803-36644046	chr1:36643803-36644071		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		5.88	0.00	13.33	0.00	8.89	NA	0.00	0.00	0.00	15.56	0.00	0.00	0.00	0.00	10.53	9.23	0.00	0.00	0.00	6.76	9.62	0.00	8.22	0.00	0.00	10.53	6.78	10.53	0.00	0.00	0.00	5.97	10.00	0.00	8.77	0.00	0.00	2.94	2.94	0.397710	0.669764
N	alternative_acceptor	FAM195B	chr17	-	chr17:79782282-79782374;chr17:79782292-79782374	chr17:79782267-79782374		chr17:79782267-79782281;chr17:79782282-79782291	chr17:79782266-79782267;chr17:79782281-79782282		0.00	0.00	10.34	8.00	5.88	0.00	0.00	0.00	11.54	5.00	0.00	5.17	0.00	0.00	6.06	4.17	4.65	0.00	6.12	17.86	0.00	5.66	3.53	5.36	4.65	0.00	0.00	9.09	4.62	6.86	4.17	0.00	7.55	11.11	11.43	8.97	2.33	0.00	-2.33	0.854056	0.947480
K	intron_retention	CTSK	chr1	-	chr1:150779283-150780689				chr1:150779282-150779283;chr1:150780689-150780690		1.12	0.00	1.67	0.00	0.00	NA	0.00	1.12	0.00	0.00	0.00	0.79	0.00	2.08	0.00	0.00	0.00	0.00	0.00	4.00	0.00	4.17	1.18	3.75	0.00	8.16	5.26	0.00	0.00	0.00	5.13	4.17	0.00	3.39	3.45	5.38	0.00	3.04	3.04	0.195275	1.000000
K	intron_retention		chr12	-	chr12:57493224-57493549				chr12:57493223-57493224;chr12:57493549-57493550		4.90	11.36	4.49	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.47	1.24	0.00	0.00	0.00	7.69	2.46	0.00	1.49	1.65	2.88	0.00	1.74	2.34	3.57	3.19	1.43	5.88	3.06	0.00	4.65	4.10	1.82	0.33	2.10	1.78	0.984695	1.000000
N	jcn_only_AA	PIP4K2A	chr10	-	chr10:22826211-22828899	chr10:22828003-22828899		chr10:22826211-22828002	chr10:22826210-22826211		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.564272	0.793185
N	alternative_donor	PSMA1,TIMM10	chr11	-	chr11:57297708-57298130;chr11:57297708-57298195;chr11:57297708-57298199	chr11:57297708-57297817		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		30.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	4.17	0.00	0.00	0.00	42.86	10.00	NA	0.00	NA	NA	66.67	NA	NA	0.00	9.09	36.36	NA	NA	NA	NA	NA	0.00	39.61	39.61	0.011884	0.225202
K	jcn_only_AD	ARL6IP4	chr12	+	chr12:123465814-123466117	chr12:123465847-123466117		chr12:123465814-123465846	chr12:123465813-123465814		68.42	76.81	64.29	76.00	64.52	65.52	63.49	76.47	66.67	82.61	85.37	100.00	79.10	80.00	68.75	70.27	79.55	81.25	51.06	46.15	75.68	64.29	70.45	61.11	67.44	NA	76.92	56.52	70.00	66.67	NA	64.71	68.75	71.43	70.00	71.43	68.09	72.44	4.35	0.998686	0.999368
N	jcn_only_AA	RP11-44M6.7,SAP25	chr7	-	chr7:100170819-100170919	chr7:100170836-100170919		chr7:100170819-100170835	chr7:100170818-100170819		100.00	100.00	100.00	NA	92.86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	90.48	100.00	86.36	NA	88.24	NA	87.91	100.00	100.00	NA	NA	NA	100.00	94.74	100.00	NA	100.00	NA	95.24	100.00	4.76	0.186160	0.663989
K	alternative_acceptor	STRN4	chr19	-	chr19:47230804-47231150;chr19:47230949-47231150	chr19:47230825-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		13.64	15.38	32.26	NA	NA	NA	19.35	13.33	9.68	9.38	12.82	4.35	14.29	7.69	23.53	15.62	13.16	18.18	NA	15.38	NA	18.18	25.00	18.75	13.33	17.86	20.00	13.33	11.76	20.00	27.27	27.27	NA	15.79	15.79	21.43	14.84	14.51	-0.32	0.929059	0.978996
N	alternative_donor	ANPEP	chr15	-	chr15:90347849-90348176;chr15:90347849-90348308	chr15:90347849-90348352		chr15:90348177-90348308;chr15:90348309-90348352	chr15:90348308-90348309;chr15:90348352-90348353		0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.11	0.00	0.00	0.00	1.24	0.00	0.00	0.00	1.19	0.00	0.00	NA	1.07	0.00	0.00	0.00	2.11	0.00	0.33	0.00	0.71	0.00	0.00	0.00	0.30	NA	1.06	0.00	2.11	0.00	0.06	0.06	0.202934	0.571503
N	jcn_only_AA	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075828-100076416	chr7:100075931-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		78.57	57.14	63.64	NA	56.52	NA	65.22	50.00	41.67	48.84	50.88	58.97	71.64	54.64	55.07	67.27	69.23	75.51	50.00	60.00	69.57	60.00	56.25	72.73	NA	75.93	74.42	61.11	62.86	94.12	68.57	65.85	53.33	81.48	84.85	77.50	57.14	64.28	7.14	0.425720	0.694751
K	intron_retention	MALAT1	chr11	+	chr11:65271678-65271796				chr11:65271677-65271678;chr11:65271796-65271797		97.14	94.92	94.62	85.71	NA	77.27	NA	95.35	88.89	72.73	80.00	50.00	90.00	93.94	84.54	78.95	78.95	NA	93.10	100.00	90.24	100.00	93.33	90.00	100.00	91.04	95.52	92.86	92.31	87.84	83.33	83.33	100.00	92.45	97.78	92.11	94.92	94.64	-0.28	0.954343	1.000000
N	alternative_acceptor	AKAP8L	chr19	-	chr19:15491219-15491327	chr19:15491242-15491327		chr19:15491219-15491241	chr19:15491218-15491219		93.10	96.91	98.18	100.00	99.12	98.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.38	88.64	96.43	100.00	98.15	100.00	100.00	100.00	98.18	100.00	100.00	100.00	89.47	96.20	89.36	97.44	97.37	100.00	98.45	96.55	-1.91	0.591956	0.844088
K	alternative_donor	EMC6	chr17	+	chr17:3572194-3572391	chr17:3572307-3572391		chr17:3572194-3572306	chr17:3572193-3572194		29.17	14.29	21.21	25.00	20.00	20.00	22.50	40.00	40.00	19.57	27.78	33.33	22.86	31.82	23.08	21.43	24.32	20.00	8.00	17.39	17.50	23.33	19.57	30.00	NA	40.00	24.14	14.81	17.65	30.30	28.00	30.77	25.00	22.73	20.00	28.21	22.50	30.50	8.00	0.026244	0.316834
N	alternative_acceptor	EIF4A1,RP11-186B7.4,SENP3-EIF4A1	chr17	+	chr17:7480484-7480665;chr17:7480484-7480661	chr17:7480484-7480751		chr17:7480662-7480665;chr17:7480666-7480751	chr17:7480665-7480666;chr17:7480751-7480752		4.44	0.00	0.00	10.54	10.31	13.75	2.95	2.63	4.26	4.70	6.62	5.42	0.00	3.85	5.60	3.85	0.00	0.00	9.84	5.11	6.04	10.49	10.28	10.07	0.00	5.50	0.00	12.76	10.96	8.18	5.31	5.92	6.49	12.43	10.70	11.46	1.48	4.78	3.30	0.499491	0.791230
K	cassette	SDHC	chr1	+	chr1:161310446-161332118	chr1:161310446-161326466;chr1:161326631-161332118		chr1:161326467-161326630			91.78	88.64	95.74	100.00	93.55	NA	95.91	95.77	94.32	96.08	97.28	94.34	97.47	93.24	91.26	97.87	93.20	94.05	90.48	96.55	92.31	96.72	91.94	92.86	NA	94.23	97.44	94.74	96.19	96.15	93.18	93.85	95.65	93.88	95.38	96.35	95.65	93.73	-1.92	0.800211	0.936947
N	jcn_only_AD	TRIM38	chr6	+	chr6:25973514-25983391;chr6:25982126-25983391;chr6:25975159-25983391	chr6:25975905-25983391		chr6:25973514-25975158;chr6:25975159-25975904;chr6:25975905-25982125	chr6:25973513-25973514;chr6:25975158-25975159;chr6:25975904-25975905		0.00	12.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	TYMP	chr22	-	chr22:50968149-50968332				chr22:50968148-50968149;chr22:50968332-50968333		18.43	27.27	28.57	28.83	25.30	25.81	16.54	15.93	18.27	25.93	27.97	22.82	13.29	20.99	23.49	24.21	26.69	24.79	20.87	18.10	17.79	30.05	31.23	30.08	31.58	17.95	22.70	27.57	25.63	23.20	18.90	21.37	20.16	30.60	22.11	31.49	20.52	18.27	-2.25	0.635748	1.000000
N	alternative_acceptor	ATRIP,TREX1	chr3	+	chr3:48507709-48508138;chr3:48507709-48508028;chr3:48507709-48508382;chr3:48507709-48508463	chr3:48507709-48508176		chr3:48508029-48508138;chr3:48508139-48508176;chr3:48508177-48508382;chr3:48508383-48508463	chr3:48508138-48508139;chr3:48508176-48508177;chr3:48508382-48508383;chr3:48508463-48508464		4.84	2.94	25.00	12.50	10.71	22.00	6.25	7.89	0.00	0.00	0.00	0.00	5.71	3.60	3.33	5.56	6.67	13.79	7.14	6.45	16.67	5.88	0.00	15.56	9.52	6.67	NA	2.22	0.00	6.56	0.00	0.00	16.67	9.68	14.29	9.72	6.70	5.64	-1.05	0.201446	0.668038
K	cassette	BCLAF1	chr6	-	chr6:136582616-136589299	chr6:136582616-136588166;chr6:136588314-136589299		chr6:136588167-136588313			76.19	61.76	73.68	47.37	65.00	38.46	68.97	55.00	69.84	41.25	61.25	43.14	66.18	68.57	63.16	50.00	55.00	48.94	66.67	63.83	64.71	65.62	71.43	57.14	80.00	81.25	63.46	51.85	68.18	50.00	55.56	65.82	59.09	54.24	63.64	54.84	66.43	66.20	-0.23	0.944538	0.985325
K	intron_retention	TIMM13	chr19	-	chr19:2427045-2427253				chr19:2427044-2427045;chr19:2427253-2427254		7.69	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	1.06	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.33	0.00	3.68	0.00	0.00	0.00	0.94	0.00	-0.94	0.841847	1.000000
K	jcn_only_AA	YIPF3	chr6	-	chr6:43483785-43484464;chr6:43483834-43484464;chr6:43483852-43484464;chr6:43483929-43484464	chr6:43483926-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.25	0.00	0.00	0.00	1.22	2.74	2.56	0.00	1.72	0.00	0.00	1.43	0.00	0.00	0.00	0.00	9.52	0.00	2.94	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.526719	0.767430
N	jcn_only_AA	BCKDK,CYLD	chr16	+	chr16:31123349-31123517;chr16:31123349-31123502	chr16:31123349-31123441		chr16:31123442-31123502;chr16:31123503-31123517	chr16:31123502-31123503;chr16:31123517-31123518		92.59	88.06	97.73	93.18	86.44	88.10	100.00	100.00	96.08	94.74	97.14	93.33	100.00	97.73	93.75	100.00	92.31	90.91	96.51	92.68	91.15	86.67	88.64	100.00	93.55	100.00	95.65	91.89	93.22	88.89	100.00	93.62	89.55	90.91	90.00	81.58	95.03	98.87	3.84	0.344600	0.663989
K	cassette	SSR4	chrX	+	chrX:153062008-153063179	chrX:153062008-153062912;chrX:153062988-153063179		chrX:153062913-153062987			95.85	97.15	93.10	97.57	97.21	96.76	100.00	99.30	100.00	100.00	100.00	99.09	100.00	100.00	100.00	98.96	100.00	100.00	96.80	93.83	97.03	95.99	97.42	97.13	100.00	98.41	97.38	98.83	99.28	99.32	96.18	96.04	96.96	98.29	98.57	98.17	98.58	97.30	-1.28	0.326824	0.709176
K	intron_retention	FBXW5	chr9	-	chr9:139837959-139838342				chr9:139837958-139837959;chr9:139838342-139838343		0.00	0.00	8.62	NA	NA	NA	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	1.16	0.00	0.00	0.00	NA	5.56	0.00	4.00	1.69	8.70	0.00	0.00	4.00	3.57	0.00	0.00	4.44	7.46	NA	3.45	5.56	4.26	0.00	0.00	0.00	0.481800	1.000000
N	alternative_acceptor	DDX3X	chrX	+	chrX:41206266-41206570;chrX:41206266-41206564	chrX:41206266-41206567		chrX:41206565-41206567;chrX:41206568-41206570	chrX:41206567-41206568;chrX:41206570-41206571		48.28	60.00	45.05	NA	NA	45.45	34.15	35.62	34.69	33.33	35.82	38.10	36.36	40.58	41.67	42.11	35.53	37.23	NA	46.51	47.62	43.24	41.94	45.21	NA	49.40	47.17	36.11	37.50	38.71	43.33	49.06	58.33	50.57	46.00	47.69	47.34	44.92	-2.42	0.678974	0.880186
K	intron_retention	SIPA1	chr11	+	chr11:65417664-65417871				chr11:65417663-65417664;chr11:65417871-65417872		4.07	2.46	4.03	7.32	4.67	2.94	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	1.75	0.00	0.00	0.00	2.99	0.00	2.95	5.56	5.00	0.00	2.44	1.98	2.41	3.23	6.00	4.44	3.60	4.96	3.07	0.00	2.13	3.45	2.45	0.99	-1.46	0.972460	1.000000
K	intron_retention	CSNK1D	chr17	-	chr17:80202708-80206750				chr17:80202707-80202708;chr17:80206750-80206751		7.04	6.17	12.90	4.26	3.23	4.76	0.00	2.50	0.00	0.00	0.00	0.00	3.03	0.00	1.82	2.38	8.82	0.00	6.82	5.45	1.59	5.56	4.00	8.33	4.26	0.00	7.69	3.85	3.77	2.78	4.35	6.25	3.39	5.45	8.20	8.00	3.83	3.42	-0.40	0.976775	1.000000
K	coord_cassette	UBE2K	chr4	+	chr4:39700011-39776453	chr4:39700011-39739039;chr4:39739134-39747371;chr4:39747431-39757276;chr4:39757360-39776453		chr4:39739040-39739133;chr4:39747372-39747430;chr4:39757277-39757359			100.00	100.00	93.22	100.00	100.00	NA	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	97.87	95.00	100.00	100.00	100.00	NA	100.00	98.08	100.00	100.00	100.00	96.77	96.36	100.00	100.00	100.00	96.30	100.00	100.00	0.00	0.185746	0.643829
K	cassette	MAPKAPK3	chr3	+	chr3:50684257-50685324	chr3:50684257-50684553;chr3:50684635-50685324		chr3:50684554-50684634			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.04	100.00	99.48	100.00	100.00	100.00	99.48	100.00	100.00	100.00	100.00	100.00	98.55	92.86	95.83	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	98.18	100.00	96.97	100.00	100.00	0.00	0.304224	0.709176
K	cassette	MTMR3	chr22	+	chr22:30416874-30418597	chr22:30416874-30418017;chr22:30418129-30418597		chr22:30418018-30418128			86.36	80.00	80.39	NA	NA	NA	76.47	85.71	86.96	83.33	82.35	80.00	70.59	91.30	88.24	66.67	66.67	69.23	NA	80.95	83.33	NA	76.92	64.29	NA	92.31	73.53	NA	NA	NA	100.00	84.38	80.00	90.48	88.89	89.29	78.23	88.83	10.59	0.006767	0.267181
N	alternative_donor	TMEM57	chr1	+	chr1:25818076-25824754	chr1:25821821-25824754		chr1:25818076-25821820	chr1:25818075-25818076		0.00	5.26	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention		chr12	-	chr12:7632510-7633756				chr12:7632509-7632510;chr12:7633756-7633757		26.35	18.78	30.59	17.60	18.84	17.82	7.12	10.15	10.05	8.21	7.05	6.11	6.78	9.91	10.84	8.51	7.71	7.16	18.47	26.69	18.39	14.71	15.13	17.05	15.91	21.67	24.38	16.14	10.74	13.97	20.45	26.93	18.61	15.53	20.97	16.55	17.19	21.06	3.87	0.327349	1.000000
N	cassette	LAT,RP11-264B17.3	chr16	+	chr16:29000911-29001253;chr16:29000911-29001509	chr16:29000911-29001094;chr16:29001161-29001253,chr16:29001161-29001509		chr16:29001095-29001160			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	95.12	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AD	CHD3	chr17	+	chr17:7812657-7813745	chr17:7812703-7813745		chr17:7812657-7812702	chr17:7812656-7812657		8.33	21.05	10.34	NA	17.39	20.00	11.11	6.25	23.81	12.50	16.00	14.29	5.00	23.08	11.11	20.00	12.90	10.00	37.50	33.33	36.36	30.77	24.00	30.77	19.05	NA	20.45	30.00	36.84	9.09	NA	17.39	33.33	25.00	16.67	31.82	20.05	15.70	-4.35	0.689269	0.842184
N	jcn_only_AA	FAM192A	chr16	-	chr16:57201139-57206162	chr16:57201143-57206162		chr16:57201139-57201142	chr16:57201138-57201139		7.27	0.00	4.94	13.33	0.00	0.00	0.00	0.00	3.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.02	0.00	0.00	9.62	10.34	0.00	5.88	3.90	0.00	0.00	3.57	6.98	11.48	8.57	5.00	1.89	10.42	0.00	6.43	6.43	0.158364	0.663989
N	cassette	ABCC3	chr17	+	chr17:48735569-48736597;chr17:48734545-48736597	chr17:48735569-48735795,chr17:48734545-48735795;chr17:48735858-48736597		chr17:48735796-48735857			100.00	96.43	97.18	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	89.47	NA	NA	100.00	100.00	94.12	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	GLS	chr2	+	chr2:191819387-191819480				chr2:191819386-191819387;chr2:191819480-191819481		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	9.09	0.00	0.00	0.00	6.06	0.00	0.00	2.94	0.00	0.00	0.00	8.00	2.08	0.00	4.41	0.00	0.88	0.00	0.00	0.00	0.494480	1.000000
K	alternative_acceptor	ZFAND2A	chr7	-	chr7:1192861-1195088;chr7:1192878-1195088	chr7:1192768-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		7.32	0.00	9.76	8.75	6.67	13.16	0.00	3.33	5.71	9.30	0.00	9.09	0.00	6.90	3.12	8.82	0.00	9.52	14.58	10.71	7.84	13.04	5.71	10.00	10.53	7.55	13.51	10.26	13.33	11.11	8.00	11.48	4.88	11.29	7.69	8.06	2.44	7.44	5.00	0.431094	0.740994
K	alternative_first_exon	RPS27L	chr15	-	chr15:63448721-63448866,chr15:63448721-63449312;chr15:63448721-63448985;chr15:63448721-63450114	chr15:63448721-63449598	chr15:63448986-63449480;chr15:63450115-63450220	chr15:63449599-63450001			94.81	97.69	91.74	97.50	97.20	96.43	97.65	95.24	97.98	93.15	95.45	95.59	98.08	94.55	96.67	96.63	98.00	95.31	98.13	95.18	98.48	96.83	96.90	94.03	97.44	91.55	97.00	92.45	98.28	91.55	89.69	92.21	97.39	91.86	94.38	91.01	97.67	94.68	-2.99	0.006359	0.040428
K	cassette	STARD3	chr17	+	chr17:37810004-37814027	chr17:37810004-37813260;chr17:37813339-37814027		chr17:37813261-37813338			100.00	100.00	100.00	NA	100.00	NA	97.67	100.00	100.00	100.00	100.00	100.00	99.05	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.224617	0.709176
K	intron_retention		chr10	+	chr10:70101438-70101515				chr10:70101437-70101438;chr10:70101515-70101516		19.28	23.00	19.33	8.91	6.56	5.95	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	11.24	22.47	14.78	14.00	11.81	11.46	8.00	9.90	11.71	6.67	3.90	4.79	51.02	32.89	38.46	12.62	13.40	13.14	9.62	14.59	4.97	0.912297	1.000000
N	alternative_acceptor	GPR84	chr12	-	chr12:54757024-54758176;chr12:54757061-54758176;chr12:54756919-54758176;chr12:54757644-54758176;chr12:54757143-54758176	chr12:54757058-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		0.81	8.33	1.20	8.57	5.00	NA	0.00	0.00	7.14	0.00	0.00	3.09	0.00	1.54	0.00	3.00	2.86	0.83	NA	2.03	13.70	1.85	1.30	1.33	NA	2.13	0.73	2.78	4.17	3.12	5.26	2.04	10.00	1.27	1.32	1.05	4.17	1.78	-2.38	0.404900	0.720107
N	alternative_acceptor	ATRIP,TREX1	chr3	+	chr3:48507709-48508176;chr3:48507709-48508028;chr3:48507709-48508382;chr3:48507709-48508463	chr3:48507709-48508138		chr3:48508029-48508138;chr3:48508139-48508176;chr3:48508177-48508382;chr3:48508383-48508463	chr3:48508138-48508139;chr3:48508176-48508177;chr3:48508382-48508383;chr3:48508463-48508464		16.13	23.53	8.33	6.25	3.57	6.00	12.50	0.00	7.14	0.00	0.00	0.00	0.00	7.21	1.67	16.67	0.00	0.00	3.57	1.61	5.56	5.88	22.22	2.22	9.52	13.33	NA	2.22	0.00	1.64	10.87	0.00	8.33	25.81	7.14	29.17	8.93	9.04	0.11	0.751581	0.908145
N	alternative_donor	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365065-62366056;chr20:62365157-62366056	chr20:62365092-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		78.38	64.10	69.70	77.78	82.61	82.50	90.91	80.95	77.27	77.42	82.35	82.35	80.00	85.00	78.26	74.19	88.89	82.35	88.89	81.82	82.76	83.33	78.26	80.00	84.21	77.27	82.86	77.42	77.27	84.21	85.00	78.95	85.71	81.82	70.83	82.00	84.96	81.38	-3.58	0.836181	0.953361
K	alternative_donor	TAPBPL	chr12	+	chr12:6570105-6571199	chr12:6570557-6571199		chr12:6570105-6570556	chr12:6570104-6570105		7.14	2.59	6.52	0.00	2.63	0.96	0.00	6.25	2.78	0.00	2.56	0.00	0.00	4.76	9.09	0.00	0.00	0.00	0.00	2.04	2.56	0.00	1.41	0.00	0.00	1.23	1.49	0.00	1.82	0.00	3.77	4.76	0.96	3.12	4.55	4.41	0.00	4.26	4.26	0.010423	0.216720
K	intron_retention		chr2	+	chr2:74758499-74758723				chr2:74758498-74758499;chr2:74758723-74758724		13.04	25.00	27.27	0.00	16.67	NA	4.76	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	7.14	NA	0.00	6.67	6.67	18.18	8.00	9.09	18.18	7.69	12.00	0.00	9.52	9.09	16.67	4.55	16.67	6.25	9.09	20.00	10.71	10.37	-0.35	0.938490	1.000000
K	alternative_acceptor	PABPC1	chr8	-	chr8:101721902-101724589	chr8:101721960-101724589		chr8:101721902-101721959	chr8:101721901-101721902		100.00	100.00	100.00	100.00	100.00	NA	100.00	96.52	97.42	95.21	95.88	100.00	97.93	100.00	100.00	100.00	95.35	94.74	100.00	97.62	93.75	100.00	95.54	94.70	100.00	98.17	97.92	98.36	100.00	94.48	100.00	93.97	100.00	96.45	97.78	97.18	100.00	99.09	-0.91	0.220147	0.671511
N	jcn_only_AA	ETV5	chr3	-	chr3:185813940-185823093;chr3:185798965-185823093;chr3:185802070-185823093;chr3:185813943-185823093;chr3:185822362-185823093	chr3:185813103-185823093					54.84	90.38	20.00	100.00	100.00	NA	15.71	29.63	17.65	21.95	35.14	26.67	22.34	38.89	10.00	41.98	35.48	61.90	100.00	57.14	92.86	NA	68.75	NA	100.00	37.50	42.31	63.16	68.75	80.00	NA	NA	100.00	58.06	51.16	51.61	95.19	38.89	-56.30	0.162902	0.663989
N	alternative_acceptor	ANPEP	chr15	-	chr15:90342786-90344341;chr15:90342915-90344341;chr15:90342820-90344341;chr15:90342772-90344341;chr15:90342810-90344341	chr15:90342791-90344341		chr15:90342772-90342785;chr15:90342786-90342790;chr15:90342791-90342809;chr15:90342810-90342819;chr15:90342820-90342914	chr15:90342771-90342772;chr15:90342785-90342786;chr15:90342790-90342791;chr15:90342809-90342810;chr15:90342819-90342820		99.33	100.00	98.64	93.18	98.67	93.33	99.34	99.69	100.00	98.94	98.85	99.15	100.00	99.12	99.29	96.58	98.72	98.06	100.00	99.52	98.59	96.42	96.32	96.00	100.00	99.64	98.54	97.55	98.66	96.46	99.47	99.77	100.00	96.68	98.51	96.89	100.00	99.50	-0.50	0.012657	0.475629
N	jcn_only_AA		chrX	+	chrX:48546486-48546707	chrX:48546486-48546688		chrX:48546689-48546707	chrX:48546707-48546708		100.00	100.00	99.35	100.00	100.00	NA	99.06	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	98.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.747743	0.887098
K	intron_retention		chr22	-	chr22:39135432-39135726				chr22:39135431-39135432;chr22:39135726-39135727		12.35	0.00	5.45	NA	NA	NA	0.00	4.41	1.61	1.37	0.00	5.56	0.81	7.94	7.14	1.64	0.00	5.71	NA	11.76	5.00	3.57	0.00	40.74	0.00	18.84	3.33	18.52	0.00	50.00	10.34	10.20	NA	7.69	0.00	37.50	0.00	11.05	11.05	0.032266	1.000000
K	intron_retention	ADCY7	chr16	+	chr16:50341059-50342237				chr16:50341058-50341059;chr16:50342237-50342238		6.00	0.00	12.50	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	NA	NA	6.06	0.00	16.67	1.79	0.00	NA	4.55	NA	0.00	0.00	0.00	5.26	2.04	0.00	0.00	0.00	0.00	0.870869	1.000000
K	jcn_only_AD	BCL3	chr19	+	chr19:45261671-45261980	chr19:45261731-45261980		chr19:45261671-45261730	chr19:45261670-45261671		2.14	0.00	1.77	1.95	1.37	1.99	3.23	2.99	1.58	1.27	0.00	0.27	0.00	1.73	1.55	3.20	2.35	1.59	0.00	1.92	1.73	3.48	2.82	1.58	0.00	3.26	1.21	2.21	0.00	2.97	1.43	1.01	9.09	2.47	4.55	0.90	0.00	2.03	2.03	0.904963	0.953792
K	intron_retention	RP11-809N8.2	chr11	-	chr11:73106803-73106928				chr11:73106802-73106803;chr11:73106928-73106929		95.28	100.00	97.37	95.83	95.00	NA	100.00	96.77	100.00	100.00	100.00	100.00	94.12	98.67	98.78	100.00	100.00	NA	95.00	100.00	97.78	92.59	94.83	100.00	100.00	100.00	96.77	96.00	100.00	100.00	100.00	95.59	100.00	100.00	100.00	100.00	100.00	99.34	-0.66	0.982999	1.000000
K	alternative_donor	SSBP1	chr7	+	chr7:141438394-141438923;chr7:141438211-141438923	chr7:141438304-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		12.50	16.67	6.25	11.11	18.00	7.69	8.51	6.25	20.00	9.52	7.41	5.41	5.08	5.26	16.22	9.90	5.88	11.90	11.54	8.70	17.14	15.15	14.06	9.62	NA	NA	10.71	10.42	12.00	15.38	16.67	12.00	12.50	15.00	19.05	10.71	11.54	8.70	-2.84	0.740582	0.891105
N	alternative_donor	SPCS3	chr4	+	chr4:177241371-177243320	chr4:177241629-177243320		chr4:177241371-177241628	chr4:177241370-177241371		0.00	0.00	3.77	0.00	0.00	0.00	0.00	2.35	1.54	1.37	0.00	1.23	2.44	1.27	1.25	0.99	1.49	2.35	0.00	3.23	0.00	3.33	0.00	6.25	0.00	4.35	0.00	2.56	0.00	1.92	0.00	0.00	3.33	0.00	2.27	3.77	0.00	1.81	1.81	0.363758	0.650093
K	intron_retention	SERPINB1	chr6	-	chr6:2833934-2836341				chr6:2833933-2833934;chr6:2836341-2836342		68.24	100.00	72.64	100.00	100.00	100.00	73.08	73.85	73.33	76.47	83.33	85.53	70.00	75.18	75.49	70.67	100.00	78.57	85.07	100.00	84.80	100.00	76.60	100.00	64.81	72.45	76.85	100.00	100.00	100.00	89.93	89.39	85.56	100.00	100.00	100.00	79.07	74.52	-4.56	0.987842	1.000000
K	jcn_only_AD	SVIP	chr11	-	chr11:22849421-22850840;chr11:22849421-22850802	chr11:22849421-22851240		chr11:22850803-22850840;chr11:22850841-22851240	chr11:22850840-22850841;chr11:22851240-22851241		100.00	100.00	100.00	NA	100.00	100.00	97.30	100.00	97.83	97.56	97.78	100.00	95.74	100.00	97.78	96.67	96.30	96.43	NA	NA	95.83	100.00	100.00	NA	100.00	100.00	100.00	92.86	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.191809	0.657607
K	alternative_donor	IK	chr5	+	chr5:140027748-140028055;chr5:140027510-140028055	chr5:140026895-140028055		chr5:140026895-140027509;chr5:140027510-140027747	chr5:140026894-140026895;chr5:140027509-140027510		6.67	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.180922	0.563271
K	jcn_only_AA	VAV1	chr19	+	chr19:6828912-6829883	chr19:6828912-6829796		chr19:6829797-6829883	chr19:6829883-6829884		96.37	96.03	97.32	97.62	95.83	100.00	95.96	100.00	95.45	97.03	100.00	96.92	95.42	95.77	94.32	95.75	95.74	95.74	100.00	93.57	93.90	94.25	94.64	95.88	100.00	94.24	97.83	100.00	97.18	95.08	89.47	94.12	89.19	100.00	96.34	96.94	96.00	95.00	-0.99	0.591033	0.811418
K	alternative_donor	DDX56	chr7	-	chr7:44609503-44609613	chr7:44609503-44609582		chr7:44609583-44609613	chr7:44609613-44609614		10.34	16.67	6.52	10.00	8.16	6.25	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.45	0.00	0.00	17.65	8.70	3.70	10.26	9.23	12.82	0.00	18.75	8.57	5.13	8.51	6.06	11.43	10.91	7.55	9.38	9.52	9.38	3.77	10.88	7.11	0.230120	0.600157
N	alternative_acceptor	SLC50A1	chr1	+	chr1:155110575-155110671;chr1:155110575-155110637	chr1:155110575-155110655		chr1:155110638-155110655;chr1:155110656-155110671	chr1:155110655-155110656;chr1:155110671-155110672		100.00	100.00	94.44	89.47	100.00	100.00	95.45	93.33	98.25	95.45	100.00	100.00	100.00	100.00	95.45	93.94	100.00	100.00	100.00	90.00	96.43	94.12	100.00	95.24	100.00	100.00	97.06	93.75	100.00	92.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.302010	0.709013
K	intron_retention	ANKRD13D	chr11	+	chr11:67069123-67069202				chr11:67069122-67069123;chr11:67069202-67069203		7.06	6.45	5.38	0.00	5.68	3.03	0.00	0.00	0.00	NA	3.85	NA	0.00	4.35	7.69	NA	0.00	NA	4.22	5.77	9.03	0.00	8.80	0.00	4.65	9.68	5.00	0.00	6.74	NA	19.44	7.62	7.02	5.00	7.89	0.00	4.44	6.41	1.98	0.457379	1.000000
K	jcn_only_AA	ELOF1	chr19	-	chr19:11664626-11664825	chr19:11664631-11664825		chr19:11664626-11664630	chr19:11664625-11664626		9.59	3.33	1.35	0.00	3.37	0.00	0.00	0.00	0.00	0.00	1.14	0.00	1.67	0.00	5.00	1.43	1.27	5.71	5.13	1.85	3.12	2.63	2.73	5.41	10.00	5.56	3.08	7.14	3.90	4.26	7.59	6.31	2.74	4.48	2.86	2.22	3.04	3.71	0.67	0.898438	0.965669
N	alternative_donor	RAD21,VPS28	chr8	-	chr8:145650384-145651065;chr8:145650384-145651043	chr8:145650384-145650492		chr8:145650493-145651043;chr8:145651044-145651065	chr8:145651043-145651044;chr8:145651065-145651066		27.27	17.65	25.81	30.77	25.00	14.29	13.64	NA	7.14	10.00	12.50	NA	15.38	NA	NA	14.29	8.33	NA	16.67	20.00	30.77	50.00	27.59	36.36	14.29	25.00	40.74	40.00	25.00	22.73	25.00	30.00	8.57	21.43	27.78	25.00	14.84	25.00	10.16	0.001843	0.112338
N	cassette	SASH3	chrX	+	chrX:128926453-128926964;chrX:128925058-128926964	chrX:128925058-128926602,chrX:128926453-128926602;chrX:128926813-128926964		chrX:128926603-128926812			100.00	100.00	94.87	NA	89.47	NA	99.18	98.77	98.77	NA	100.00	100.00	100.00	100.00	100.00	NA	98.80	NA	100.00	88.75	100.00	NA	100.00	NA	100.00	95.96	94.59	100.00	94.34	NA	90.48	89.74	100.00	NA	89.80	100.00	100.00	97.36	-2.64	0.091613	0.658231
K	cassette	POR	chr7	+	chr7:75609807-75610834	chr7:75609807-75610365;chr7:75610491-75610834		chr7:75610366-75610490			94.92	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	83.33	96.97	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	94.12	100.00	96.47	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	IL24,MAP7D1	chr1	+	chr1:36644917-36645115	chr1:36644917-36645112		chr1:36645113-36645115	chr1:36645115-36645116		6.44	6.78	8.49	8.00	7.72	7.14	6.74	5.33	5.52	8.04	4.91	4.17	5.80	4.30	6.71	5.86	6.30	7.92	6.20	5.79	5.32	8.70	9.65	10.10	5.71	7.09	7.00	8.90	6.25	8.84	8.72	7.80	8.72	8.40	9.25	8.89	6.47	6.12	-0.36	0.633614	0.860585
K	jcn_only_AA	UPP1,ZNF282	chr7	+	chr7:48143009-48146469	chr7:48143009-48143378		chr7:48143379-48146469	chr7:48146469-48146470		1.55	0.00	3.15	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.90	0.00	2.44	2.50	0.68	0.00	2.55	0.00	1.52	0.00	1.28	0.00	3.09	0.00	0.00	2.54	2.20	2.20	1.28	2.27	0.00	0.00	2.11	0.00	5.04	0.00	1.54	1.54	0.031279	0.651306
N	cassette	SOD1	chr21	+	chr21:33032155-33038761;chr21:33033022-33038761	chr21:33032155-33036102,chr21:33033022-33036102;chr21:33036200-33038761		chr21:33036103-33036199			100.00	98.44	100.00	96.32	95.65	94.69	99.03	98.39	100.00	99.23	98.77	99.01	98.75	95.76	97.59	100.00	99.25	100.00	98.45	99.01	97.51	100.00	98.81	98.70	94.08	97.92	96.83	100.00	98.28	97.65	96.75	98.43	98.45	96.57	98.56	97.72	98.45	98.16	-0.30	0.917477	0.978594
N	alternative_acceptor	TACO1	chr17	+	chr17:4799638-4799729	chr17:4799638-4799723		chr17:4799724-4799729	chr17:4799729-4799730		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.88	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	intron_retention	TBCD	chr17	+	chr17:80887377-80888397				chr17:80887376-80887377;chr17:80888397-80888398		3.45	5.32	7.14	0.00	4.26	0.00	0.00	0.00	NA	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	0.00	4.00	0.00	2.22	0.00	1.75	0.00	11.11	0.00	2.56	0.00	0.00	5.26	1.79	0.00	0.00	0.00	1.77	0.00	-1.77	0.396828	1.000000
K	intron_retention	TRIM21	chr11	-	chr11:4407488-4408197				chr11:4407487-4407488;chr11:4408197-4408198		3.41	0.00	2.38	0.00	5.88	0.00	0.00	1.49	0.00	0.00	0.00	0.00	0.00	0.76	1.01	1.41	0.00	0.00	NA	6.76	0.00	6.67	5.56	7.89	NA	3.36	10.00	5.36	11.11	5.56	1.59	7.02	0.00	5.77	3.03	3.73	0.00	2.48	2.48	0.050652	1.000000
N	cassette	ATP1B3	chr3	+	chr3:141634863-141640818	chr3:141634863-141635217;chr3:141635283-141640818		chr3:141635218-141635282			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709176
N	alternative_donor	MAD1L1	chr7	-	chr7:1976534-1979723;chr7:1976534-1979373	chr7:1976534-1997263		chr7:1979374-1979723;chr7:1979724-1997263	chr7:1979723-1979724;chr7:1997263-1997264		93.75	97.33	100.00	NA	97.44	94.12	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	97.96	NA	97.62	NA	100.00	100.00	97.50	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.686612	0.866509
K	intron_retention	TRPC4AP	chr20	-	chr20:33591087-33591212				chr20:33591086-33591087;chr20:33591212-33591213		5.00	5.88	7.27	4.44	8.99	8.57	2.20	0.80	1.49	0.00	0.00	0.00	0.00	1.12	0.88	0.00	0.00	0.00	9.26	5.50	6.36	4.84	13.04	3.49	13.64	2.46	2.61	1.30	6.33	1.00	7.59	11.18	13.16	8.14	6.76	3.75	7.57	3.73	-3.84	0.202556	1.000000
K	alternative_acceptor	POLR2E	chr19	-	chr19:1088681-1089470;chr19:1086988-1089470	chr19:1088720-1089470		chr19:1086988-1088680;chr19:1088681-1088719	chr19:1086987-1086988;chr19:1088680-1088681		100.00	92.38	96.43	94.05	91.57	95.00	94.20	95.24	97.96	94.64	95.89	95.24	95.70	95.45	98.36	94.52	95.83	97.62	92.27	100.00	96.46	93.48	92.31	97.30	90.82	100.00	96.43	100.00	93.55	95.00	90.70	95.06	93.53	94.55	94.87	95.45	92.95	97.72	4.77	0.063581	0.580713
K	alternative_donor	YBX1	chr1	+	chr1:43149037-43159160	chr1:43149138-43159160		chr1:43149037-43149137	chr1:43149036-43149037		100.00	100.00	100.00	94.59	96.81	100.00	99.18	97.22	98.97	99.26	99.43	99.47	99.37	96.55	98.04	99.00	99.24	99.46	100.00	98.08	97.37	98.60	98.25	98.91	100.00	100.00	100.00	99.49	99.16	98.66	97.44	100.00	100.00	97.03	97.86	98.46	100.00	97.76	-2.24	0.049132	0.393754
K	intron_retention	AMDHD2	chr16	+	chr16:2578150-2578236				chr16:2578149-2578150;chr16:2578236-2578237		14.29	0.00	9.09	0.00	3.03	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	11.76	0.00	NA	0.00	NA	0.00	9.09	NA	0.00	0.00	0.00	18.75	0.00	0.00	5.88	0.00	0.00	0.00	13.02	13.02	0.183162	1.000000
K	intron_retention	SMPD1	chr11	+	chr11:6414924-6415125				chr11:6414923-6414924;chr11:6415125-6415126		2.17	0.00	3.45	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	5.77	0.00	0.00	0.00	3.03	0.00	0.00	0.00	1.67	2.00	2.78	3.39	0.00	0.00	0.00	0.00	0.00	0.477307	1.000000
N	jcn_only_AA	PGS1	chr17	+	chr17:76415757-76419272;chr17:76415757-76420141	chr17:76415757-76416294		chr17:76416295-76419272;chr17:76419273-76420141	chr17:76419272-76419273;chr17:76420141-76420142		11.43	0.00	10.61	20.00	0.00	28.57	0.00	10.00	7.35	0.00	NA	NA	NA	8.33	13.16	15.38	NA	NA	0.00	19.05	0.00	41.67	0.00	15.00	NA	0.00	3.12	6.25	0.00	26.47	12.00	18.52	0.00	NA	NA	27.27	0.00	10.71	10.71	0.010115	0.482846
N	cassette	FASTK	chr7	-	chr7:150773920-150774187;chr7:150773920-150774396	chr7:150773920-150773999;chr7:150774115-150774187,chr7:150774115-150774396		chr7:150774000-150774114			100.00	90.11	88.57	93.85	84.21	93.98	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	94.44	100.00	NA	92.06	100.00	94.38	100.00	88.00	100.00	89.16	100.00	92.31	100.00	92.11	96.43	100.00	91.43	89.71	91.30	90.91	92.31	91.09	100.00	8.91	0.026725	0.412736
K	intron_retention	LMF2	chr22	-	chr22:50943764-50943831				chr22:50943763-50943764;chr22:50943831-50943832		5.36	3.03	6.98	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	1.52	0.00	0.00	0.00	NA	5.00	0.00	5.88	11.36	16.67	8.33	4.69	10.26	6.67	5.41	0.00	7.89	8.77	18.18	7.89	9.09	4.76	3.03	4.85	1.82	0.995605	1.000000
K	jcn_only_AA	CBY1,PPIL2	chr22	+	chr22:22049360-22049686	chr22:22049360-22049682		chr22:22049683-22049686	chr22:22049686-22049687		90.00	100.00	100.00	NA	90.91	NA	100.00	100.00	93.10	86.67	100.00	NA	100.00	100.00	92.86	95.45	94.87	NA	91.67	100.00	100.00	100.00	96.00	NA	NA	100.00	90.91	100.00	91.67	90.91	NA	86.67	NA	94.12	100.00	100.00	100.00	100.00	0.00	0.978029	0.992281
K	cassette	GUSB	chr7	-	chr7:65432895-65439281	chr7:65432895-65435268;chr7:65435354-65439281		chr7:65435269-65435353			93.55	94.44	100.00	97.44	94.05	100.00	100.00	98.28	99.00	100.00	97.95	100.00	98.70	100.00	100.00	100.00	99.28	100.00	96.43	95.00	97.48	97.62	96.47	100.00	100.00	100.00	91.67	97.65	96.50	100.00	100.00	98.31	97.06	95.00	97.33	98.10	97.88	99.14	1.26	0.982387	0.995298
N	alternative_acceptor	FYB	chr5	-	chr5:39137823-39138758	chr5:39138220-39138758		chr5:39137823-39138219	chr5:39137822-39137823		10.53	5.26	12.20	NA	NA	NA	2.75	0.71	1.25	0.00	4.88	0.00	3.70	2.88	4.44	7.69	0.00	0.00	8.33	11.11	NA	NA	10.00	NA	9.68	12.90	8.57	NA	NA	NA	NA	13.04	5.88	NA	11.76	10.00	5.57	10.53	4.96	0.550878	0.824249
K	intron_retention		chr19	+	chr19:49842671-49843507				chr19:49842670-49842671;chr19:49843507-49843508		18.39	16.23	17.31	3.17	8.99	4.40	12.88	6.19	7.32	1.72	6.12	0.00	10.83	6.03	18.75	3.92	6.49	2.56	17.48	21.67	8.62	5.26	8.84	2.56	14.68	11.71	17.02	9.68	6.82	4.50	18.00	22.73	10.20	9.23	10.29	5.83	13.78	14.86	1.07	0.936353	1.000000
K	intron_retention		chr12	+	chr12:6497672-6497965				chr12:6497671-6497672;chr12:6497965-6497966		0.00	0.00	1.97	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	1.49	0.00	4.05	3.12	5.88	0.00	1.47	0.00	3.51	0.00	0.00	2.10	0.00	0.00	1.45	2.50	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	MYO1F	chr19	-	chr19:8620681-8642190	chr19:8620681-8641492		chr19:8641493-8642190	chr19:8642190-8642191		2.42	6.15	1.76	NA	6.25	NA	0.00	0.66	1.11	2.08	0.74	0.00	0.43	0.68	0.00	0.00	0.79	0.00	7.14	0.86	5.56	0.00	1.33	0.00	1.82	1.04	1.80	5.00	5.00	NA	2.13	1.22	4.35	0.00	2.30	0.00	3.08	0.95	-2.13	0.165985	0.563271
N	jcn_only_AA	TAOK3	chr12	-	chr12:118588964-118590031	chr12:118589801-118590031		chr12:118588964-118589800	chr12:118588963-118588964		0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.72	3.03	0.00	0.00	0.00	0.00	0.00	8.00	0.00	3.17	2.67	2.27	0.00	0.00	5.56	3.85	0.00	3.74	0.00	4.26	0.00	0.00	0.00	0.194124	0.663989
N	alternative_acceptor	STK11	chr19	+	chr19:1223172-1223636;chr19:1223172-1226457	chr19:1223172-1226452		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		75.00	81.33	71.43	75.00	88.37	94.74	82.61	100.00	94.12	93.33	92.59	100.00	94.44	90.91	88.89	86.36	85.29	NA	76.00	75.00	82.61	NA	84.00	NA	83.02	83.33	82.86	85.71	86.36	78.57	88.89	75.00	79.37	83.33	70.83	82.35	81.97	86.11	4.14	0.579430	0.839743
K	intron_retention	TNFAIP2	chr14	+	chr14:103597488-103597975				chr14:103597487-103597488;chr14:103597975-103597976		1.81	5.38	1.76	0.00	NA	0.00	0.00	0.00	0.28	0.00	0.00	0.11	0.00	0.32	0.57	0.48	0.00	0.15	0.00	1.17	0.00	1.22	1.52	1.02	3.39	1.31	1.21	0.40	0.00	0.94	2.37	1.95	15.00	1.08	1.67	1.08	1.70	1.24	-0.46	0.562435	1.000000
N	alternative_first_exon	APOPT1,RP11-73M18.2	chr14	+	chr14:104029462-104037959	chr14:104029717-104037959,chr14:104029721-104037959	chr14:104029299-104029461	chr14:104029510-104029716			30.00	5.56	20.00	NA	18.75	NA	7.69	30.00	22.22	13.79	14.81	30.77	14.71	NA	13.64	9.68	11.43	11.11	15.38	30.00	30.00	26.67	12.50	13.33	NA	NA	27.27	13.33	12.00	13.33	30.00	45.45	16.67	28.57	26.09	29.41	14.71	30.00	15.29	0.001309	0.016643
K	intron_retention	ARHGEF40	chr14	+	chr14:21557036-21557172				chr14:21557035-21557036;chr14:21557172-21557173		19.70	17.74	20.00	NA	15.49	NA	7.69	11.54	9.52	NA	13.89	NA	6.82	11.86	5.26	NA	10.53	NA	26.32	10.34	13.64	NA	25.64	NA	14.29	11.36	22.58	NA	18.42	NA	14.29	22.22	12.50	NA	16.67	NA	13.39	11.70	-1.70	0.892139	1.000000
N	jcn_only_AD	MAPK13	chr6	+	chr6:36098479-36099047;chr6:36095733-36099047	chr6:36098935-36099047		chr6:36095733-36098478;chr6:36098479-36098934	chr6:36095732-36095733;chr6:36098478-36098479		23.91	26.67	12.82	13.04	8.82	NA	2.59	3.92	0.00	0.72	1.33	1.37	3.92	0.00	4.35	2.11	1.36	0.00	NA	14.29	12.50	14.89	10.17	13.33	NA	28.21	21.95	11.67	17.91	12.82	11.11	26.67	0.00	13.92	14.86	13.64	3.25	12.70	9.45	0.515379	0.754276
K	intron_retention		chrX	+	chrX:23802001-23803444				chrX:23802000-23802001;chrX:23803444-23803445		12.22	4.08	13.21	7.91	8.65	10.08	11.98	13.44	14.75	9.19	10.59	9.62	16.57	18.78	24.95	11.86	11.14	10.20	5.46	13.59	12.79	11.13	10.04	15.82	12.31	22.49	23.32	34.52	19.67	24.90	8.05	9.29	3.54	19.46	15.08	18.58	8.72	13.52	4.79	0.247933	1.000000
K	intron_retention	CLK2	chr1	-	chr1:155234092-155234258				chr1:155234091-155234092;chr1:155234258-155234259		5.17	0.00	4.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	2.50	0.00	12.12	9.43	4.26	0.00	2.13	1.92	0.00	8.57	2.70	8.82	6.98	0.00	6.00	0.00	3.85	0.00	2.31	2.31	0.167602	1.000000
N	jcn_only_AD	SORBS3	chr8	+	chr8:22414422-22415641;chr8:22414367-22415641	chr8:22414792-22415641		chr8:22414367-22414421;chr8:22414422-22414791	chr8:22414366-22414367;chr8:22414421-22414422		NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	jcn_only_AA	ALDH3B1	chr11	+	chr11:67790230-67793476	chr11:67790230-67791675		chr11:67791676-67793476	chr11:67793476-67793477		0.00	0.00	6.12	NA	0.00	NA	0.78	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	NA	0.00	0.00	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.575081	0.800363
K	cassette	KIAA0226L	chr13	-	chr13:46918967-46923420	chr13:46918967-46919581;chr13:46919736-46923420		chr13:46919582-46919735			98.15	90.00	98.40	96.39	93.55	98.80	83.33	98.36	100.00	97.92	84.62	100.00	100.00	100.00	100.00	98.44	100.00	100.00	NA	97.06	100.00	96.49	93.10	98.02	NA	100.00	100.00	100.00	100.00	100.00	94.12	97.06	100.00	96.55	100.00	100.00	95.00	98.25	3.25	0.343630	0.709176
N	jcn_only_AA	TLN1	chr9	-	chr9:35726532-35732071;chr9:35729397-35732071	chr9:35725725-35732071		chr9:35725725-35726531;chr9:35726532-35729396	chr9:35725724-35725725;chr9:35726531-35726532		100.00	100.00	100.00	NA	NA	NA	98.39	100.00	100.00	100.00	97.52	95.56	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	76.92	NA	83.33	94.74	100.00	100.00	100.00	100.00	85.71	NA	100.00	100.00	NA	95.24	100.00	100.00	100.00	100.00	0.00	0.193886	0.663989
N	alternative_donor	METRNL	chr17	+	chr17:81037862-81042813;chr17:81041067-81042813;chr17:81039948-81042813;chr17:81042033-81042813;chr17:81039315-81042813	chr17:81042593-81042813		chr17:81037862-81039314;chr17:81039315-81039947;chr17:81039948-81041066;chr17:81041067-81042032;chr17:81042033-81042592	chr17:81037861-81037862;chr17:81039314-81039315;chr17:81039947-81039948;chr17:81041066-81041067;chr17:81042032-81042033		1.14	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.66	0.00	1.50	0.00	0.00	0.00	0.89	0.82	1.37	0.00	1.82	0.00	1.15	0.83	2.30	0.00	1.41	1.14	1.49	1.27	2.82	1.61	1.64	0.00	6.15	1.85	5.74	0.00	1.27	1.27	0.028868	0.329885
K	intron_retention	IDH2	chr15	-	chr15:90630808-90631590				chr15:90630807-90630808;chr15:90631590-90631591		1.59	8.64	4.00	0.00	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	1.67	0.00	0.00	3.96	4.17	18.92	0.00	3.92	0.00	1.80	0.00	0.00	0.00	12.50	0.00	1.64	0.00	5.49	0.00	-5.49	0.388584	1.000000
N	jcn_only_AD	C7orf50	chr7	-	chr7:1049780-1049867;chr7:1049780-1060996;chr7:1049780-1067893	chr7:1049780-1166892		chr7:1049868-1060996;chr7:1060997-1067893;chr7:1067894-1166892	chr7:1060996-1060997;chr7:1067893-1067894;chr7:1166892-1166893		5.26	7.69	0.00	6.67	3.28	9.09	11.76	0.00	2.30	13.04	6.86	5.13	17.91	0.00	7.55	24.00	13.04	14.29	8.45	2.86	5.71	13.33	3.12	0.00	15.09	0.00	0.00	0.00	12.96	14.29	0.00	0.00	6.58	15.79	7.55	5.56	10.11	0.00	-10.11	0.001710	0.125290
N	jcn_only_AA		chr19	+	chr19:47761661-47761842;chr19:47761661-47761819	chr19:47761661-47761815		chr19:47761816-47761819;chr19:47761820-47761842	chr19:47761819-47761820;chr19:47761842-47761843		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	94.44	95.45	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	GNB2	chr7	+	chr7:100274423-100274974				chr7:100274422-100274423;chr7:100274974-100274975		2.68	3.33	2.79	3.64	0.68	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.38	0.34	0.58	0.47	0.00	0.00	1.10	2.69	3.38	2.02	2.76	5.05	4.00	3.08	4.44	1.52	1.52	2.29	4.46	5.22	0.91	3.38	3.73	3.49	1.01	2.69	1.68	0.625402	1.000000
N	alternative_acceptor		chr15	+	chr15:63421850-63423184;chr15:63421850-63426576;chr15:63421850-63447849;chr15:63421850-63433199	chr15:63421850-63433478		chr15:63423185-63426576;chr15:63426577-63433199;chr15:63433200-63433478;chr15:63433479-63447849	chr15:63426576-63426577;chr15:63433199-63433200;chr15:63433478-63433479;chr15:63447849-63447850		89.47	95.45	90.00	95.83	96.88	92.50	100.00	94.12	94.12	96.00	100.00	96.97	100.00	92.86	94.44	96.00	100.00	96.15	95.00	83.33	95.00	100.00	92.86	92.31	80.00	88.89	93.75	100.00	100.00	97.92	81.82	91.30	95.24	91.18	96.00	89.29	95.34	89.18	-6.16	0.141402	0.642022
N	cassette	EMILIN2	chr18	+	chr18:2892485-2908940	chr18:2892485-2906780;chr18:2907084-2908940		chr18:2906781-2907083			99.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	99.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	94.67	100.00	100.00	100.00	97.87	100.00	97.92	100.00	100.00	100.00	98.28	100.00	98.93	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SLC26A11	chr17	+	chr17:78223087-78225127				chr17:78223086-78223087;chr17:78225127-78225128		9.52	3.70	10.00	4.76	9.52	5.00	2.13	0.00	NA	0.00	1.69	0.00	0.00	NA	NA	4.00	4.55	0.00	0.00	0.00	0.00	3.03	12.50	2.38	20.00	3.70	4.35	3.70	11.11	0.00	2.22	8.33	7.14	6.76	6.12	3.66	2.92	2.22	-0.69	0.650795	1.000000
K	intron_retention	UPF1	chr19	+	chr19:18976976-18977329				chr19:18976975-18976976;chr19:18977329-18977330		3.70	0.00	8.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	4.76	2.86	0.00	7.69	3.03	4.76	0.00	0.00	0.00	11.11	9.84	11.76	8.00	9.38	4.08	0.00	3.37	3.37	0.868829	1.000000
N	alternative_donor		chr19	-	chr19:6730396-6730999	chr19:6730396-6730997		chr19:6730998-6730999	chr19:6730999-6731000		100.00	100.00	94.12	93.88	96.77	92.31	96.43	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.10	90.91	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	97.47	96.84	100.00	100.00	94.59	100.00	100.00	100.00	0.00	0.817444	0.942369
N	jcn_only_AD	MS4A6A	chr11	-	chr11:59945790-59946266;chr11:59945790-59947303;chr11:59945790-59946687	chr11:59945790-59949053					2.27	6.54	0.00	4.00	7.38	10.53	2.20	0.88	0.00	2.74	3.02	3.27	2.04	0.00	NA	2.16	1.70	3.60	6.25	0.00	NA	6.10	6.37	3.33	5.41	0.00	4.35	6.67	6.00	6.36	18.18	10.53	9.52	4.86	4.05	3.12	5.83	0.44	-5.39	0.594695	0.799292
N	jcn_only_AD	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130929817;chr9:130929444-130931354	chr9:130929444-130931330		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		82.86	82.05	92.45	80.77	84.72	90.48	83.78	92.31	90.62	80.77	88.10	93.75	90.57	100.00	89.47	92.68	90.20	91.30	82.54	81.25	80.70	88.24	86.89	85.71	87.50	86.36	81.13	90.24	86.81	94.59	100.00	81.13	80.00	85.00	85.71	83.78	83.16	89.34	6.18	0.149385	0.657607
N	jcn_only_AD	PLXNB2,THOC5	chr22	-	chr22:50714393-50715057	chr22:50714393-50714562		chr22:50714563-50715057	chr22:50715057-50715058		0.00	0.00	0.91	0.00	2.01	0.00	1.41	2.80	3.65	7.77	5.40	6.38	0.97	2.04	1.90	3.79	4.33	10.00	2.24	0.00	1.04	2.61	2.74	7.41	1.28	3.43	0.81	2.38	1.63	0.00	0.00	0.52	0.00	0.54	1.08	2.88	1.12	1.02	-0.10	0.605363	0.805858
N	alternative_acceptor	PPIL2	chr22	+	chr22:22049786-22051091;chr22:22049786-22051173;chr22:22049786-22050319	chr22:22049786-22051035		chr22:22050320-22051035;chr22:22051036-22051091;chr22:22051092-22051173	chr22:22051035-22051036;chr22:22051091-22051092;chr22:22051173-22051174		20.00	25.00	23.53	NA	28.57	NA	34.62	33.33	40.00	26.32	35.48	NA	33.33	40.00	37.50	21.05	25.58	NA	18.18	25.00	18.18	NA	22.73	NA	NA	45.45	33.33	33.33	29.17	27.27	NA	28.57	NA	30.77	31.58	27.27	29.16	33.33	4.16	0.438372	0.747568
N	alternative_acceptor	RNH1	chr11	-	chr11:502250-504426;chr11:503613-504426	chr11:502182-504426		chr11:502182-502249;chr11:502250-503612	chr11:502181-502182;chr11:502249-502250		9.09	0.00	NA	0.00	21.57	NA	5.17	8.70	NA	28.57	16.33	23.53	20.69	14.00	6.25	16.67	28.57	16.98	37.50	NA	53.85	31.82	35.56	56.25	21.74	12.50	0.00	20.00	14.71	25.71	22.22	NA	30.77	16.00	16.42	18.18	21.21	12.50	-8.71	0.379491	0.709013
K	alternative_last_exon	CFH,TOR3A	chr1	+	chr1:179063353-179066962	chr1:179063353-179064102	chr1:179066963-179067158	chr1:179064103-179065131			100.00	98.15	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.84	100.00	100.00	100.00	100.00	98.85	100.00	100.00	98.95	96.67	97.62	96.00	98.84	91.30	99.00	95.12	96.67	100.00	100.00	100.00	100.00	96.97	99.10	96.92	99.02	94.37	99.05	100.00	0.95	0.564971	0.705266
N	jcn_only_AD	DTX2P1,DTX2P1-UPK3BP1-PMS2P11	chr7	+	chr7:76631664-76633534;chr7:76632767-76633534	chr7:76631639-76633534					NA	NA	NA	NA	NA	NA	10.00	3.92	1.87	0.00	5.00	0.00	9.09	5.00	5.56	0.00	0.00	0.00	0.00	8.00	NA	0.00	3.70	7.14	NA	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	6.12	4.54	3.92	-0.62	0.679411	0.835715
K	intron_retention	GGA1	chr22	+	chr22:38028523-38028607				chr22:38028522-38028523;chr22:38028607-38028608		4.76	2.05	1.42	1.79	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.85	0.00	2.84	0.00	0.00	1.23	1.39	0.00	0.00	0.00	8.40	4.14	4.48	1.64	1.82	0.00	0.00	3.00	3.00	0.361407	1.000000
K	jcn_only_AA	MRPL52	chr14	+	chr14:23299150-23299258;chr14:23299150-23299395	chr14:23299150-23299261					48.65	55.95	41.43	47.73	51.67	51.02	35.14	41.67	29.63	44.19	37.78	29.41	36.84	33.33	34.48	23.40	34.52	13.04	43.37	50.91	37.00	48.00	46.15	43.75	44.19	62.50	47.46	30.00	41.67	33.33	40.68	51.02	52.44	37.93	45.71	50.00	43.78	45.16	1.38	0.765545	0.896441
K	cassette	SCFD1	chr14	+	chr14:31175092-31185129	chr14:31175092-31177195;chr14:31177272-31185129		chr14:31177196-31177271			100.00	100.00	97.67	95.00	97.67	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	96.97	92.50	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	EPN1	chr19	+	chr19:56201317-56204051	chr19:56201317-56203119;chr19:56203424-56204051		chr19:56203120-56203423			95.16	100.00	92.73	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	100.00	100.00	100.00	100.00	89.19	100.00	100.00	100.00	100.00	100.00	88.24	88.31	88.73	94.29	100.00	94.87	96.00	100.00	4.00	0.473831	0.770157
N	jcn_only_AA		chr14	+	chr14:23240558-23240656;chr14:23240558-23240692	chr14:23240558-23240642		chr14:23240643-23240656;chr14:23240657-23240692	chr14:23240656-23240657;chr14:23240692-23240693		100.00	97.24	100.00	100.00	99.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.19	96.08	98.77	100.00	98.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.55	96.09	93.48	100.00	100.00	98.86	98.62	100.00	1.38	0.898488	0.965669
K	jcn_only_AD	RPL10	chrX	+	chrX:153626736-153626837	chrX:153626740-153626837		chrX:153626736-153626739	chrX:153626735-153626736		0.00	0.00	0.00	2.27	2.74	0.00	0.00	0.00	0.00	2.47	4.48	1.72	3.20	0.00	0.00	1.43	0.00	0.00	5.49	0.00	3.03	1.77	3.21	3.08	0.00	0.00	0.00	1.71	0.00	0.00	0.00	0.00	2.40	0.00	0.00	0.00	1.20	0.00	-1.20	0.102039	0.643330
N	jcn_only_AA	SF3A3	chr1	-	chr1:38445202-38446257	chr1:38445206-38446257		chr1:38445202-38445205	chr1:38445201-38445202		100.00	94.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_donor	FDXR	chr17	-	chr17:72861054-72861840	chr17:72861054-72861833		chr17:72861834-72861840	chr17:72861840-72861841		0.00	0.00	4.76	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	8.33	NA	0.00	0.00	0.00	NA	NA	NA	0.00	1.05	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	CD163	chr12	-	chr12:7632593-7635238				chr12:7632592-7632593;chr12:7635238-7635239		35.16	23.12	51.67	31.25	45.90	32.65	9.09	12.87	9.09	1.89	5.56	3.28	12.86	14.29	17.86	16.67	5.56	7.41	36.84	39.24	38.10	38.46	46.88	34.38	26.85	41.51	46.67	50.00	45.95	52.00	23.08	53.85	31.17	22.58	40.68	42.86	24.98	29.12	4.13	0.914424	1.000000
N	jcn_only_AA	PRR34-AS1	chr22	+	chr22:40805530-40805691;chr22:40805530-40805694;chr22:40805530-40806135	chr22:40805530-40805685		chr22:40805686-40805691;chr22:40805692-40805694;chr22:40805695-40806135	chr22:40805691-40805692;chr22:40805694-40805695;chr22:40806135-40806136		92.31	97.34	100.00	87.50	96.92	82.86	94.29	NA	100.00	100.00	96.15	NA	97.37	100.00	93.33	100.00	100.00	NA	95.76	100.00	100.00	100.00	94.87	100.00	92.98	94.12	95.12	100.00	95.00	100.00	100.00	89.74	93.16	95.00	100.00	100.00	95.03	100.00	4.97	0.298170	0.663989
N	intron_retention		chr12	-	chr12:133303170-133303808				chr12:133303169-133303170;chr12:133303808-133303809		100.00	100.00	100.00	89.66	93.33	89.74	100.00	100.00	93.33	93.10	96.88	93.15	100.00	100.00	92.31	90.77	96.15	91.38	100.00	91.67	100.00	96.08	97.78	94.32	100.00	100.00	93.33	92.11	100.00	91.95	92.00	93.33	100.00	94.34	100.00	94.12	100.00	100.00	0.00	0.319998	1.000000
N	jcn_only_AA	SDF4	chr1	-	chr1:1153185-1153837;chr1:1153161-1153837	chr1:1153069-1153837		chr1:1153069-1153160;chr1:1153161-1153184	chr1:1153068-1153069;chr1:1153160-1153161		99.63	98.84	98.71	98.09	97.65	97.84	98.57	98.40	93.70	94.07	98.30	97.86	97.55	98.68	93.52	91.28	95.66	96.58	98.65	97.64	98.90	97.11	97.21	97.78	100.00	99.50	97.85	96.57	96.39	95.67	99.51	98.89	99.35	98.88	98.86	97.52	98.75	99.09	0.34	0.889203	0.960322
K	intron_retention	RNF40	chr16	+	chr16:30778198-30779214				chr16:30778197-30778198;chr16:30779214-30779215		5.56	0.00	5.26	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.03	0.00	0.00	NA	3.23	1.79	NA	5.00	0.00	3.33	0.00	0.00	0.00	0.475035	1.000000
K	intron_retention	CDYL	chr6	+	chr6:4952644-4954131				chr6:4952643-4952644;chr6:4954131-4954132		0.00	0.00	3.57	3.51	2.56	2.04	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	3.57	3.23	3.45	0.00	5.41	4.65	0.00	4.55	1.20	3.70	3.12	4.00	7.69	0.00	7.35	0.00	0.00	0.00	0.721513	1.000000
N	alternative_acceptor	TRPM2	chr21	+	chr21:45838439-45843527	chr21:45838439-45838830		chr21:45838831-45843527	chr21:45843527-45843528		2.70	3.55	6.25	NA	3.45	NA	1.79	4.35	0.00	NA	4.00	NA	1.39	0.00	NA	5.26	3.85	NA	4.76	2.56	0.00	3.57	3.57	4.17	11.11	5.26	5.26	14.29	3.23	14.29	4.00	4.76	2.86	5.08	5.26	3.33	3.21	3.35	0.15	0.524064	0.808638
K	jcn_only_AA	DNAJC25-GNG10,GNG10	chr9	+	chr9:114429227-114431551	chr9:114429227-114431548		chr9:114431549-114431551	chr9:114431551-114431552		61.01	52.94	56.57	65.00	58.18	50.00	66.51	65.46	63.53	66.67	67.72	67.65	65.24	67.68	71.62	67.06	68.21	64.93	70.00	63.92	67.01	65.32	62.10	58.94	76.92	66.67	60.94	71.88	58.26	65.56	67.16	59.09	47.37	67.44	61.34	63.73	65.88	66.06	0.19	0.658110	0.847477
N	alternative_acceptor	TDP2	chr6	-	chr6:24651320-24653210;chr6:24651318-24653210;chr6:24651143-24653210	chr6:24651298-24653210		chr6:24651143-24651297;chr6:24651298-24651317;chr6:24651318-24651319	chr6:24651142-24651143;chr6:24651297-24651298;chr6:24651317-24651318		98.81	100.00	98.51	100.00	98.70	95.00	100.00	100.00	100.00	99.28	99.46	100.00	100.00	99.05	100.00	98.77	98.55	96.49	100.00	98.62	100.00	98.28	99.14	99.25	100.00	100.00	99.05	97.90	99.05	97.04	99.29	100.00	100.00	99.80	99.74	100.00	100.00	99.17	-0.83	0.032891	0.560254
K	alternative_acceptor	CMTR1	chr6	+	chr6:37447032-37450267	chr6:37447032-37447788		chr6:37447789-37450267	chr6:37450267-37450268		98.82	100.00	100.00	100.00	100.00	93.59	100.00	98.68	100.00	100.00	93.33	100.00	100.00	94.74	100.00	100.00	93.33	93.10	100.00	95.77	100.00	100.00	95.24	98.21	100.00	96.74	100.00	100.00	100.00	98.10	95.59	96.00	90.00	100.00	94.74	98.11	100.00	96.25	-3.75	0.403301	0.719111
K	alternative_last_exon	SEC22C	chr3	-	chr3:42590150-42597421	chr3:42594941-42597421	chr3:42589461-42590149	chr3:42594416-42594940			8.33	6.10	8.22	19.23	10.77	23.81	26.32	25.00	20.83	23.81	22.41	25.93	26.56	34.21	29.63	38.33	23.08	30.00	4.62	13.33	14.06	14.89	9.72	22.50	9.26	6.90	6.15	18.92	13.11	25.58	10.34	7.25	7.81	21.43	14.49	25.00	8.54	11.84	3.30	0.643299	0.774457
N	alternative_acceptor	TRIM38	chr6	+	chr6:25973514-25975017;chr6:25973514-25982028;chr6:25973514-25982025;chr6:25973514-25975032;chr6:25973514-25975130;chr6:25973514-25983391	chr6:25973514-25983395		chr6:25975018-25975032;chr6:25975033-25975130;chr6:25975131-25982025;chr6:25982026-25982028;chr6:25982029-25983391;chr6:25983392-25983395	chr6:25975032-25975033;chr6:25975130-25975131;chr6:25982025-25982026;chr6:25982028-25982029;chr6:25983391-25983392;chr6:25983395-25983396		2.70	0.00	0.00	NA	NA	NA	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.33	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.723519	0.896493
N	alternative_last_exon	EMC3	chr3	-	chr3:10005878-10011402;chr3:9991857-10011402	chr3:10005882-10011402	chr3:9990785-9991856	chr3:10004221-10005881			100.00	95.74	93.02	96.08	100.00	96.63	91.67	100.00	96.15	96.97	100.00	100.00	97.37	100.00	95.83	100.00	95.35	100.00	96.23	100.00	98.90	93.33	96.08	100.00	100.00	95.65	97.67	100.00	100.00	100.00	100.00	96.23	96.85	97.62	97.50	96.97	96.54	100.00	3.46	0.053303	0.242424
K	intron_retention	ENTPD6	chr20	+	chr20:25204794-25205797				chr20:25204793-25204794;chr20:25205797-25205798		3.57	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	12.50	0.00	0.00	0.00	NA	NA	NA	4.76	NA	8.33	4.55	NA	0.00	0.00	10.00	NA	5.88	NA	0.00	5.88	NA	0.00	9.52	0.00	0.00	0.00	0.00	0.940605	1.000000
N	cassette	FAM193B	chr5	-	chr5:176949073-176951185;chr5:176949073-176951774	chr5:176949073-176950957;chr5:176951034-176951774,chr5:176951034-176951185		chr5:176950958-176951033			100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.10	93.10	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	OGFR	chr20	+	chr20:61436383-61438888;chr20:61436383-61438893	chr20:61436383-61438033		chr20:61438034-61438888;chr20:61438889-61438893	chr20:61438888-61438889;chr20:61438893-61438894		5.75	4.17	6.52	9.09	0.00	NA	0.00	2.46	3.28	1.54	2.86	4.71	2.56	1.40	5.56	4.60	2.13	3.81	0.00	4.49	5.26	9.38	3.12	14.67	3.57	5.26	5.71	11.27	3.03	6.50	3.53	2.94	0.00	17.14	3.45	12.61	1.28	4.01	2.73	0.074108	0.585944
K	alternative_acceptor	TXN2	chr22	-	chr22:36876835-36877610;chr22:36876885-36877610	chr22:36876796-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		0.00	0.00	9.09	NA	3.57	NA	2.67	0.00	0.00	3.39	3.74	2.63	4.40	5.88	10.71	6.06	1.77	0.00	0.00	7.14	7.41	0.00	0.00	NA	0.00	0.00	5.26	0.00	11.76	0.00	8.33	5.26	0.00	0.00	0.00	0.00	0.00	2.94	2.94	0.226488	0.679463
N	alternative_acceptor	IRF7	chr11	-	chr11:613116-613205;chr11:613118-613205	chr11:613133-613205		chr11:613116-613117;chr11:613118-613132	chr11:613115-613116;chr11:613117-613118		8.53	13.33	7.89	10.26	11.11	9.97	10.00	1.41	1.16	4.35	NA	2.35	5.56	1.71	2.66	4.62	9.09	2.33	15.38	9.81	13.14	15.52	10.00	9.71	9.09	5.24	10.11	10.26	7.14	8.08	14.23	15.00	17.74	11.50	17.65	9.72	11.66	6.88	-4.78	0.096315	0.598353
K	cassette	MINOS1,MINOS1-NBL1	chr1	+	chr1:19923604-19948593	chr1:19923604-19943751;chr1:19943831-19948593		chr1:19943752-19943830			0.92	1.44	2.84	3.64	3.15	3.17	1.37	0.00	2.33	2.13	1.55	1.30	1.63	3.03	1.80	3.31	2.59	5.13	2.82	3.30	2.40	3.28	3.11	5.97	0.34	0.00	2.26	2.46	1.06	3.21	2.08	2.27	1.68	2.94	2.52	3.94	1.53	1.50	-0.03	0.990537	0.997468
K	intron_retention		chr17	-	chr17:27041729-27041810				chr17:27041728-27041729;chr17:27041810-27041811		2.00	5.94	4.78	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.85	2.40	0.00	3.85	0.00	2.27	0.00	2.74	0.00	3.23	0.00	7.14	4.35	5.71	0.00	0.00	0.00	1.14	1.00	-0.14	0.997078	1.000000
K	cassette	TRNAU1AP	chr1	+	chr1:28887245-28887857	chr1:28887245-28887624;chr1:28887773-28887857		chr1:28887625-28887772			5.00	0.00	11.76	NA	11.76	NA	0.00	4.55	5.26	2.04	0.00	0.00	3.70	0.00	8.33	0.00	0.00	0.00	NA	6.25	7.69	18.18	12.00	16.67	NA	16.67	12.50	8.33	5.88	7.14	14.29	16.00	16.67	8.70	11.11	7.41	1.85	5.62	3.77	0.590669	0.844113
K	alternative_acceptor	ARL6IP4	chr12	+	chr12:123465847-123466202;chr12:123465847-123466117	chr12:123465847-123466141		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		55.56	64.15	52.38	61.36	64.60	68.97	70.51	61.11	59.57	75.00	67.16	75.00	69.07	54.55	65.91	68.75	68.83	70.97	73.96	56.25	69.14	63.64	61.76	52.38	73.28	75.00	48.84	73.53	74.49	76.74	75.00	58.06	69.57	71.88	65.71	55.26	70.04	58.68	-11.36	0.134777	0.631204
K	intron_retention	RP11-746M1.1	chr17	+	chr17:20903351-20903423				chr17:20903350-20903351;chr17:20903423-20903424		100.00	100.00	96.36	92.08	94.17	96.27	94.52	100.00	96.77	91.18	93.88	100.00	96.15	100.00	100.00	96.30	93.75	66.67	93.16	92.19	93.51	100.00	92.06	90.00	100.00	98.28	95.28	93.62	89.06	95.83	93.27	92.86	90.75	91.30	93.51	92.75	95.34	99.14	3.80	0.741749	1.000000
N	cassette	PIGF	chr2	-	chr2:46808731-46818941;chr2:46808731-46819613	chr2:46808731-46815213;chr2:46815319-46818941,chr2:46815319-46819613		chr2:46815214-46815318			11.76	0.00	8.33	NA	12.50	8.33	9.52	5.26	11.76	11.76	5.00	13.64	8.33	5.26	11.11	0.00	14.81	7.69	17.39	7.69	7.14	NA	25.00	NA	0.00	0.00	10.00	NA	21.43	18.18	9.09	10.00	5.56	8.33	7.69	8.33	6.95	6.47	-0.47	0.928755	0.982136
K	jcn_only_AD	NDUFS8	chr11	+	chr11:67798201-67799618;chr11:67798618-67799618;chr11:67798345-67799618	chr11:67798429-67799618		chr11:67798201-67798344;chr11:67798345-67798428;chr11:67798429-67798617	chr11:67798200-67798201;chr11:67798344-67798345;chr11:67798428-67798429		0.00	7.23	4.08	0.00	3.77	0.00	3.95	NA	3.23	0.00	3.17	0.00	3.17	0.00	0.00	2.13	0.00	0.00	3.77	0.00	2.82	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	1.59	0.00	0.00	6.67	3.47	0.00	-3.47	0.021725	0.345954
K	intron_retention	MKNK2	chr19	-	chr19:2042662-2042764				chr19:2042661-2042662;chr19:2042764-2042765		3.09	0.00	3.23	NA	0.00	NA	0.00	0.00	2.44	0.00	0.00	0.00	1.05	2.56	1.89	0.00	0.00	NA	5.88	1.56	2.86	5.00	2.44	0.00	7.14	4.00	2.08	NA	0.00	0.00	3.85	5.71	7.55	2.33	3.64	4.44	3.46	2.83	-0.64	0.529051	1.000000
N	jcn_only_AA		chr5	+	chr5:139574238-139608314;chr5:139574238-139661081	chr5:139574238-139622889		chr5:139608315-139622889;chr5:139622890-139661081	chr5:139622889-139622890;chr5:139661081-139661082		98.85	100.00	100.00	83.61	93.44	88.37	98.37	100.00	98.94	96.26	98.21	97.73	97.01	99.17	100.00	95.50	96.10	97.01	100.00	98.90	95.88	98.33	97.44	100.00	100.00	98.65	100.00	95.12	100.00	95.06	98.15	100.00	100.00	95.35	100.00	95.45	100.00	98.88	-1.12	0.644855	0.841673
K	intron_retention		chr22	-	chr22:51065189-51065261				chr22:51065188-51065189;chr22:51065261-51065262		21.92	12.77	25.42	16.22	12.68	10.34	0.00	2.88	2.30	1.61	4.48	0.00	1.49	4.76	5.41	2.94	3.64	0.00	11.90	18.75	15.15	9.68	21.74	16.22	13.04	13.83	21.43	15.38	12.50	8.20	20.00	33.82	12.28	16.67	16.67	10.34	12.09	16.29	4.20	0.763391	1.000000
K	intron_retention		chr20	-	chr20:17596655-17597376				chr20:17596654-17596655;chr20:17597376-17597377		2.67	0.00	2.99	0.00	2.00	1.41	0.00	0.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.18	1.42	0.83	0.00	4.11	5.56	1.85	1.50	1.98	0.00	0.00	1.33	2.99	4.29	0.00	7.41	0.00	2.33	0.00	1.46	1.46	0.274513	1.000000
K	intron_retention	SNRNP70	chr19	+	chr19:49604729-49607890				chr19:49604728-49604729;chr19:49607890-49607891		25.93	33.59	27.94	44.14	42.26	37.82	4.85	6.00	3.37	4.55	4.96	4.76	5.84	4.88	8.57	4.65	2.92	1.32	34.81	29.63	30.32	41.67	37.96	33.33	33.82	15.58	16.98	35.96	28.47	30.19	41.46	35.14	35.02	40.00	37.39	38.71	33.70	20.75	-12.95	0.668623	1.000000
N	alternative_acceptor	MRPL44	chr2	+	chr2:224828652-224831579	chr2:224828652-224831556		chr2:224831557-224831579	chr2:224831579-224831580		2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	1.89	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.662036	0.877732
N	jcn_only_AA	JDP2	chr14	+	chr14:75904825-75928128;chr14:75904825-75928132	chr14:75904825-75911792		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		2.70	0.00	1.98	19.23	1.33	42.31	2.88	3.30	4.94	21.32	6.84	18.18	8.48	3.45	4.41	40.38	4.10	18.12	2.78	0.00	5.77	23.53	3.37	39.02	0.00	2.82	0.00	33.33	5.71	57.14	3.92	0.00	4.88	23.53	4.96	32.94	2.83	3.06	0.23	0.751072	0.887739
N	alternative_acceptor	RHOT1,SLC26A11	chr17	+	chr17:78223087-78223980;chr17:78223087-78224971;chr17:78223087-78223974;chr17:78223087-78225127	chr17:78223087-78223764		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		6.52	1.82	5.00	0.00	1.54	0.00	0.00	0.00	NA	0.00	1.67	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	3.45	0.00	0.00	5.38	0.00	4.76	3.23	0.00	0.00	1.54	0.00	2.08	4.17	0.00	3.75	3.85	1.19	0.00	3.23	3.23	0.177856	0.660713
K	intron_retention		chr16	+	chr16:2011638-2011797				chr16:2011637-2011638;chr16:2011797-2011798		27.14	34.86	32.35	18.02	20.83	15.90	11.97	20.00	13.85	9.23	11.40	10.71	11.20	16.67	13.46	10.00	7.21	8.33	18.29	23.40	16.19	11.63	21.21	15.38	28.87	18.75	22.22	15.00	17.89	11.24	25.93	21.43	23.55	19.67	16.67	17.05	20.92	21.70	0.78	0.959902	1.000000
K	alternative_first_exon	NTMT1	chr9	+	chr9:132388575-132396332,chr9:132388601-132396332	chr9:132395081-132396332,chr9:132395145-132396332	chr9:132388452-132388574	chr9:132394929-132395080			100.00	92.50	91.18	85.00	90.91	85.71	94.29	NA	96.55	95.83	94.59	NA	95.45	80.00	93.55	94.29	97.78	91.67	94.29	83.33	91.89	100.00	84.85	NA	95.45	NA	91.67	92.86	91.89	100.00	91.67	92.31	91.43	100.00	88.46	NA	94.29	87.50	-6.79	0.334947	0.536334
N	alternative_acceptor	E2F3,ORC3	chr6	+	chr6:88375552-88376735	chr6:88375552-88376728		chr6:88376729-88376735	chr6:88376735-88376736		9.09	0.00	9.09	NA	6.25	NA	NA	NA	11.11	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	13.33	10.53	5.88	NA	13.33	NA	NA	10.00	11.11	NA	0.00	NA	15.38	15.79	14.29	15.38	NA	NA	6.67	10.27	3.60	0.366446	0.709013
N	jcn_only_AA	PIK3C3	chr18	+	chr18:39623782-39629494	chr18:39623782-39627551		chr18:39627552-39629494	chr18:39629494-39629495	chr18:39629495-39629569	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	ELMO3	chr16	+	chr16:30666742-30666848;chr16:30666742-30666834	chr16:30666742-30666822		chr16:30666823-30666834;chr16:30666835-30666848	chr16:30666834-30666835;chr16:30666848-30666849		57.69	51.72	78.12	NA	100.00	80.00	NA	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	62.96	64.00	83.33	83.33	100.00	NA	93.33	78.57	80.00	100.00	86.36	91.67	64.52	70.45	80.00	65.00	87.50	78.95	80.00	64.52	-15.48	0.704459	0.889760
K	intron_retention	USF2	chr19	+	chr19:35769696-35769872				chr19:35769695-35769696;chr19:35769872-35769873		85.29	79.41	83.87	84.85	89.80	78.95	80.30	67.86	84.00	78.57	79.22	81.58	77.55	69.23	68.18	77.05	78.57	85.71	81.36	88.46	81.40	85.71	93.33	83.78	86.05	76.67	86.49	84.62	82.35	85.71	85.71	79.17	87.76	91.84	90.14	87.14	80.83	80.98	0.15	0.994044	1.000000
K	alternative_acceptor	SZT2,TARDBP	chr1	+	chr1:11082308-11083319	chr1:11082308-11083249		chr1:11083250-11083319	chr1:11083319-11083320		90.00	100.00	88.00	100.00	92.59	NA	83.33	100.00	100.00	86.67	100.00	NA	88.00	NA	100.00	87.50	100.00	NA	81.82	100.00	100.00	100.00	100.00	100.00	NA	83.33	78.95	100.00	90.32	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.00	100.00	12.00	0.463690	0.765952
K	alternative_acceptor	APRT	chr16	-	chr16:88876249-88876477;chr16:88876316-88876477	chr16:88876115-88876477		chr16:88876115-88876248;chr16:88876249-88876315	chr16:88876114-88876115;chr16:88876248-88876249		18.75	27.96	14.29	36.00	27.94	25.41	19.89	0.00	11.32	29.73	34.00	29.21	26.19	15.38	15.94	31.33	35.26	30.26	31.72	25.00	25.00	31.15	28.89	30.19	31.88	27.27	20.51	28.17	25.50	28.00	21.43	13.33	29.67	37.50	25.71	23.42	28.82	20.09	-8.73	0.058509	0.570243
K	alternative_acceptor	PAF1	chr19	-	chr19:39876860-39877121	chr19:39877044-39877121		chr19:39876860-39877043	chr19:39876859-39876860		100.00	100.00	96.92	93.85	96.26	93.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.27	93.55	91.73	100.00	95.59	100.00	100.00	97.01	100.00	92.45	95.40	93.88	88.50	90.48	90.76	94.34	100.00	94.03	97.72	98.50	0.78	0.759009	0.910949
N	jcn_only_AD	CNPY2	chr12	-	chr12:56709027-56709690;chr12:56709027-56709661	chr12:56709027-56709604		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		92.86	82.52	92.86	100.00	100.00	88.00	98.46	100.00	91.67	94.74	95.83	92.11	93.75	100.00	98.53	92.86	97.87	93.10	93.88	97.06	91.18	100.00	89.06	88.00	100.00	100.00	90.74	100.00	91.67	100.00	87.80	95.65	94.83	100.00	87.50	84.62	94.35	98.53	4.18	0.479584	0.726209
N	alternative_donor	ABCC3	chr17	+	chr17:48755956-48757158;chr17:48755581-48757158	chr17:48756936-48757158		chr17:48755581-48755955;chr17:48755956-48756935	chr17:48755580-48755581;chr17:48755955-48755956		25.00	18.18	28.06	NA	16.67	NA	2.78	8.33	NA	0.00	7.89	0.00	4.55	NA	7.14	0.00	10.53	NA	18.18	21.05	12.00	4.55	14.29	4.17	26.67	36.00	28.89	7.14	22.73	0.00	22.22	28.57	6.67	13.79	24.44	3.45	12.43	22.22	9.79	0.137003	0.549706
K	intron_retention	GGNBP2	chr17	+	chr17:34942629-34943426				chr17:34942628-34942629;chr17:34943426-34943427		6.25	0.00	3.92	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	2.27	0.00	7.69	0.00	5.00	0.00	14.29	0.00	3.70	2.44	0.00	0.00	3.33	0.00	1.69	1.85	5.08	0.00	2.56	2.56	0.198200	1.000000
K	jcn_only_AD	STX4	chr16	+	chr16:31044844-31045333	chr16:31045157-31045333		chr16:31044844-31045156	chr16:31044843-31044844		97.52	95.41	96.94	68.04	80.58	66.04	82.98	98.11	97.78	83.78	86.54	82.03	90.32	100.00	96.25	91.61	93.27	79.80	92.86	96.23	90.32	80.34	90.67	78.95	91.55	97.71	100.00	80.00	83.33	82.55	92.80	95.10	90.16	59.57	73.33	70.83	90.94	97.61	6.68	0.010793	0.256953
K	mutually_exclusive	TMEM259	chr19	-	chr19:1010895-1011094,chr19:1011195-1011365	chr19:1010895-1010989,chr19:1011095-1011365	chr19:1011095-1011194	chr19:1010990-1011094			3.61	3.23	4.10	3.12	3.03	5.56	3.12	4.17	8.00	1.33	2.06	1.89	3.49	3.51	5.81	4.11	1.74	0.00	2.86	5.26	3.28	2.27	2.00	0.00	4.00	5.17	2.91	4.76	3.70	3.57	5.26	1.92	2.70	1.54	1.59	5.56	3.17	4.67	1.50	0.012278	0.078591
K	intron_retention	FKBP1A	chr20	-	chr20:1350717-1352719				chr20:1350716-1350717;chr20:1352719-1352720		3.26	1.43	6.25	0.00	1.92	NA	0.55	1.87	1.45	2.04	1.03	0.72	0.28	3.45	2.26	0.89	1.00	1.02	0.00	2.86	2.99	4.41	2.99	2.27	0.00	1.59	3.79	1.54	1.75	1.72	0.00	5.56	7.14	1.99	1.92	1.51	0.42	2.37	1.95	0.998362	1.000000
N	cassette	DENND1C	chr19	-	chr19:6470378-6471416	chr19:6470378-6471275;chr19:6471317-6471416		chr19:6471276-6471316			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	jcn_only_AA	RNH1	chr11	-	chr11:503613-504426;chr11:502182-504426	chr11:502250-504426		chr11:502182-502249;chr11:502250-503612	chr11:502181-502182;chr11:502249-502250		NA	100.00	NA	NA	50.00	NA	90.00	86.67	NA	NA	75.00	NA	62.50	75.86	NA	58.82	0.00	67.86	68.42	NA	NA	61.11	60.98	NA	61.54	76.92	NA	65.38	68.75	57.14	68.18	NA	NA	61.90	59.26	62.16	68.42	76.39	7.97	0.963462	0.987074
N	jcn_only_AA	CHI3L1	chr1	-	chr1:203148305-203148888;chr1:203148554-203148888;chr1:203148627-203148888;chr1:203148708-203148888	chr1:203148714-203148888		chr1:203148305-203148553;chr1:203148554-203148626;chr1:203148627-203148707;chr1:203148708-203148713	chr1:203148304-203148305;chr1:203148553-203148554;chr1:203148626-203148627;chr1:203148707-203148708		98.70	100.00	100.00	100.00	98.68	100.00	99.10	99.31	98.72	99.11	98.67	98.61	100.00	100.00	97.87	100.00	100.00	100.00	100.00	100.00	94.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.88	99.55	97.56	100.00	99.66	98.68	100.00	99.66	-0.34	0.937345	0.979703
K	coord_cassette	APOPT1,RP11-73M18.2	chr14	+	chr14:104029462-104053610	chr14:104029462-104037959;chr14:104038158-104040443;chr14:104040508-104053610		chr14:104037960-104038157;chr14:104040444-104040507			80.00	78.57	100.00	80.00	90.48	92.31	87.10	84.62	72.73	83.33	91.18	86.36	85.29	92.31	83.33	74.36	89.74	90.91	60.87	75.00	78.95	87.50	89.29	84.62	84.62	80.00	73.33	80.00	91.67	90.00	NA	90.91	75.00	87.50	91.67	83.33	81.59	80.00	-1.59	0.461728	0.692112
K	jcn_only_AA	RNF25	chr2	-	chr2:219530783-219530881	chr2:219530808-219530881		chr2:219530783-219530807	chr2:219530782-219530783		6.25	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	4.76	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160101320-160103505;chr6:160016237-160103505;chr6:160100398-160103505;chr6:160100367-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160101368-160103505;chr6:160100377-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160100331-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		20.21	28.57	17.95	35.43	30.00	45.23	NA	14.06	13.10	10.48	9.09	12.21	NA	23.08	16.28	16.30	9.09	13.21	31.82	21.28	28.21	18.12	18.18	19.22	45.45	21.50	19.21	19.15	19.23	24.72	27.62	23.39	33.33	18.18	16.16	18.26	32.58	21.39	-11.19	0.025858	0.546324
N	jcn_only_AA	PPP1R21,SLC4A1AP	chr2	+	chr2:48732736-48734407	chr2:48732736-48732856		chr2:48732857-48734407	chr2:48734407-48734408		3.12	0.00	0.00	NA	0.00	NA	0.00	0.00	4.55	NA	0.00	NA	0.00	0.00	3.70	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.17	NA	3.85	NA	11.11	5.26	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.249410	0.663989
K	jcn_only_AA	CERS2	chr1	-	chr1:150941568-150947094;chr1:150940989-150947094	chr1:150941608-150947094					4.92	0.00	4.92	NA	NA	NA	3.70	8.91	6.51	4.20	3.93	4.76	2.93	5.26	5.43	2.76	4.27	2.47	NA	4.35	NA	4.17	4.08	2.63	0.00	4.00	7.23	2.78	6.12	10.53	9.09	6.15	NA	5.56	4.17	6.76	1.47	5.09	3.62	0.012475	0.486024
K	intron_retention	PPM1M	chr3	+	chr3:52283339-52283685				chr3:52283338-52283339;chr3:52283685-52283686		26.53	18.84	29.09	NA	15.58	NA	2.59	5.13	4.35	0.00	4.95	0.00	4.59	8.33	13.04	11.76	5.71	NA	23.53	25.00	19.23	25.00	26.14	NA	20.00	19.23	23.08	11.11	20.19	NA	16.67	25.58	20.83	8.33	22.58	NA	19.42	17.95	-1.47	0.906259	1.000000
N	jcn_only_AA	UBC	chr12	-	chr12:125391808-125399132;chr12:125398321-125399132;chr12:125398312-125399132	chr12:125375350-125399132		chr12:125375350-125391807;chr12:125391808-125398311;chr12:125398312-125398320	chr12:125375349-125375350;chr12:125391807-125391808;chr12:125398311-125398312		0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.30	0.22	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.217821	0.663989
N	alternative_acceptor	MTCH1	chr6	-	chr6:36937560-36937814;chr6:36936751-36937814	chr6:36937292-36937814		chr6:36936751-36937291;chr6:36937292-36937559	chr6:36936750-36936751;chr6:36937291-36937292		7.53	6.52	13.64	10.11	8.50	3.33	1.91	1.02	2.08	2.86	2.54	1.97	3.26	3.11	2.84	4.44	3.37	1.88	6.33	5.73	5.56	9.74	9.86	10.77	13.89	7.62	9.84	10.65	10.13	8.05	5.88	7.44	5.61	8.52	8.55	7.34	5.97	5.80	-0.17	0.595748	0.845481
N	coord_cassette	PLXND1	chr3	-	chr3:129290688-129292436	chr3:129290688-129291451;chr3:129291592-129291684;chr3:129291785-129292436		chr3:129291452-129291591;chr3:129291685-129291784			100.00	100.00	95.07	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.11	NA	73.33	87.27	86.21	100.00	100.00	100.00	100.00	94.59	NA	NA	86.67	91.67	100.00	93.42	92.06	100.00	100.00	0.00	0.930184	0.972993
K	jcn_only_AA	PHF23	chr17	-	chr17:7140082-7140703;chr17:7140087-7140703	chr17:7139886-7140703		chr17:7139886-7140081;chr17:7140082-7140086	chr17:7139885-7139886;chr17:7140081-7140082		9.43	0.00	4.55	NA	14.29	NA	7.69	4.41	8.00	14.75	15.87	14.29	9.68	1.52	6.98	5.97	12.00	14.29	0.00	8.16	14.81	17.65	11.11	NA	0.00	6.85	8.00	9.09	14.29	NA	5.13	8.57	18.18	4.65	12.24	6.90	3.85	5.99	2.15	0.998020	0.999366
K	intron_retention	AC005944.2	chr19	+	chr19:3053334-3053584				chr19:3053333-3053334;chr19:3053584-3053585		91.73	92.61	91.88	91.60	91.40	94.29	92.31	94.69	92.00	93.06	93.92	95.26	93.35	94.87	95.36	89.72	94.50	90.99	94.13	95.22	93.61	92.04	92.02	92.37	96.01	92.44	92.41	96.60	92.83	92.91	95.27	92.26	95.83	93.24	92.31	93.77	93.74	94.78	1.04	0.595790	1.000000
K	coord_cassette	TMEM14C	chr6	+	chr6:10723475-10726139	chr6:10723475-10724788;chr6:10724867-10725193;chr6:10725271-10726139		chr6:10724789-10724866;chr6:10725194-10725270			89.66	100.00	91.67	93.75	95.12	NA	100.00	100.00	100.00	100.00	97.10	100.00	97.66	100.00	100.00	100.00	100.00	100.00	100.00	92.86	96.43	97.44	95.24	97.73	NA	100.00	93.75	100.00	95.38	100.00	100.00	89.36	100.00	100.00	96.55	100.00	100.00	100.00	0.00	0.258591	0.643829
K	intron_retention		chr19	-	chr19:36398483-36399069				chr19:36398482-36398483;chr19:36399069-36399070		12.39	8.15	17.89	9.42	14.32	5.00	12.45	12.80	15.67	11.29	18.09	9.17	17.74	21.38	20.42	10.61	27.53	12.30	4.11	7.89	10.76	4.37	10.96	1.95	13.41	11.70	13.65	19.23	20.41	8.92	7.07	16.89	6.60	9.94	11.69	3.05	10.30	12.04	1.74	0.701882	1.000000
K	intron_retention	RPL10A	chr6	+	chr6:35437307-35437955				chr6:35437306-35437307;chr6:35437955-35437956		2.56	0.76	4.88	2.34	2.20	2.17	0.19	0.00	0.00	0.31	0.15	0.00	0.00	0.00	0.00	0.73	0.29	0.00	1.27	9.62	1.00	5.54	3.75	4.55	2.11	6.25	2.80	1.31	2.56	2.27	12.96	6.45	2.08	2.24	3.31	1.63	1.02	4.41	3.39	0.299487	1.000000
K	alternative_first_exon	RABGAP1L	chr1	+	chr1:174934123-174938413;chr1:174926687-174938413	chr1:174927311-174938413	chr1:174933905-174934122;chr1:174926594-174926686	chr1:174927028-174927310			97.56	100.00	NA	100.00	100.00	100.00	60.00	85.95	80.43	NA	72.73	71.05	NA	91.93	84.09	100.00	80.00	69.23	100.00	93.62	100.00	NA	NA	81.82	100.00	94.34	NA	100.00	100.00	99.24	96.36	NA	100.00	NA	NA	89.58	100.00	93.98	-6.02	0.881356	0.919227
K	cassette	HDAC5	chr17	-	chr17:42169653-42170043	chr17:42169653-42169748;chr17:42169896-42170043		chr17:42169749-42169895			100.00	100.00	100.00	NA	NA	NA	100.00	93.33	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	0.00	0.179241	0.709176
K	alternative_last_exon	C15orf57	chr15	-	chr15:40831555-40849414;chr15:40846327-40849414	chr15:40824502-40849414	chr15:40831428-40831554;chr15:40845298-40846326	chr15:40823540-40824501			6.00	2.70	10.81	0.00	0.00	0.00	5.88	4.92	8.70	3.85	2.94	4.00	3.12	4.69	3.70	2.00	7.14	3.03	3.33	8.16	2.94	5.26	2.56	0.00	4.00	10.81	13.16	3.23	2.70	3.33	8.57	8.82	3.70	2.78	0.00	2.17	3.52	7.08	3.56	0.015932	0.184325
N	jcn_only_AD	SORBS3	chr8	+	chr8:22414792-22415641;chr8:22414367-22415641	chr8:22414422-22415641		chr8:22414367-22414421;chr8:22414422-22414791	chr8:22414366-22414367;chr8:22414421-22414422		NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	NA	100.00	97.67	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
N	coord_cassette	RRP36	chr6	+	chr6:42989523-42993774	chr6:42989523-42992722;chr6:42992871-42993000;chr6:42993068-42993774		chr6:42992723-42992870;chr6:42993001-42993067			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	92.86	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AD	COPS6	chr7	+	chr7:99688931-99689042	chr7:99688954-99689042		chr7:99688931-99688953	chr7:99688930-99688931		93.48	97.39	95.38	97.06	97.75	94.23	92.21	95.65	95.00	97.14	96.30	100.00	90.67	90.00	93.62	94.23	97.06	94.74	87.93	92.31	91.26	95.45	98.63	100.00	89.77	81.25	95.52	100.00	96.92	93.18	90.91	91.03	92.91	97.44	96.61	96.55	91.44	91.61	0.17	0.630528	0.817497
N	jcn_only_AD	PPID,RWDD4	chr4	-	chr4:184570722-184572136	chr4:184570722-184572132		chr4:184572133-184572136	chr4:184572136-184572137		0.00	0.00	0.00	0.00	7.41	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	1.39	0.00	0.00	5.56	0.00	7.69	3.70	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.33	3.45	3.70	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor		chr21	+	chr21:42824797-42826136;chr21:42824797-42826601;chr21:42824797-42830499;chr21:42824797-42830457	chr21:42824797-42830454		chr21:42826137-42826601;chr21:42826602-42830454;chr21:42830455-42830457;chr21:42830458-42830499	chr21:42826601-42826602;chr21:42830454-42830455;chr21:42830457-42830458;chr21:42830499-42830500		98.03	100.00	96.08	100.00	100.00	99.57	100.00	99.29	99.49	100.00	NA	99.30	100.00	99.35	98.74	98.28	100.00	99.45	100.00	98.50	100.00	97.67	100.00	97.85	NA	98.57	100.00	97.92	NA	99.13	99.19	98.87	NA	93.16	NA	97.57	100.00	98.88	-1.12	0.002939	0.353909
K	intron_retention	PDLIM7	chr5	-	chr5:176918927-176919405				chr5:176918926-176918927;chr5:176919405-176919406		2.53	0.00	8.70	NA	3.23	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	2.00	0.00	0.00	4.35	4.88	NA	14.63	NA	NA	7.41	12.50	NA	7.50	NA	4.76	6.25	0.00	0.00	4.69	12.50	0.00	3.44	3.44	0.229828	1.000000
K	alternative_acceptor	UNC50	chr2	+	chr2:99232997-99234630	chr2:99232997-99234608		chr2:99234609-99234630	chr2:99234630-99234631		2.00	5.77	5.48	3.03	4.11	3.12	2.08	2.78	4.44	0.00	2.70	4.17	1.79	2.86	2.63	0.00	1.56	0.00	7.14	2.08	3.23	3.33	3.28	0.00	NA	4.35	7.46	3.57	2.70	3.92	0.00	2.86	6.38	2.94	0.00	5.56	5.77	2.43	-3.34	0.119936	0.606219
K	jcn_only_AA	GTF2A2	chr15	-	chr15:59942964-59944404	chr15:59942973-59944404		chr15:59942964-59942972	chr15:59942963-59942964		96.92	100.00	97.62	96.77	97.56	100.00	100.00	100.00	96.43	96.19	98.47	100.00	98.25	100.00	100.00	96.81	100.00	94.44	100.00	90.70	100.00	96.08	95.88	98.08	100.00	100.00	95.18	95.24	97.00	97.56	93.48	100.00	100.00	95.52	97.53	100.00	100.00	98.46	-1.54	0.139859	0.663989
K	intron_retention	KMT2B	chr19	+	chr19:36228165-36228536				chr19:36228164-36228165;chr19:36228536-36228537		2.38	0.00	6.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.70	0.00	0.00	0.00	0.00	2.70	4.76	0.00	6.82	0.00	0.00	0.00	3.70	0.00	5.26	0.00	1.92	6.67	0.00	0.00	5.26	1.92	0.00	0.96	0.96	0.475098	1.000000
K	intron_retention		chr7	-	chr7:938587-938669				chr7:938586-938587;chr7:938669-938670		5.41	2.04	4.35	5.71	0.00	0.00	0.00	0.00	NA	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	2.56	0.00	3.70	6.19	2.70	0.00	0.00	6.67	1.09	2.41	0.00	3.45	NA	2.44	7.69	5.77	11.76	1.02	1.28	0.26	0.921771	1.000000
N	jcn_only_AD	ADA	chr20	-	chr20:43264930-43279463;chr20:43264930-43279758;chr20:43264930-43269710;chr20:43264930-43268764;chr20:43264930-43280542	chr20:43264930-43280215		chr20:43268765-43269710;chr20:43269711-43279463;chr20:43279464-43279758;chr20:43279759-43280215;chr20:43280216-43280542	chr20:43269710-43269711;chr20:43279463-43279464;chr20:43279758-43279759;chr20:43280215-43280216;chr20:43280542-43280543		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	99.57	98.25	100.00	100.00	100.00	100.00	98.97	100.00	99.42	NA	97.96	100.00	100.00	98.57	99.07	NA	99.10	100.00	100.00	97.22	99.02	100.00	97.56	100.00	100.00	100.00	99.78	100.00	100.00	0.00	0.212583	0.657607
N	alternative_acceptor	PPM1G	chr2	-	chr2:27604589-27604992	chr2:27604673-27604992		chr2:27604589-27604672	chr2:27604588-27604589		100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	94.23	100.00	95.45	100.00	100.00	95.35	97.33	96.77	100.00	100.00	100.00	100.00	97.92	95.52	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	98.28	95.92	100.00	95.83	100.00	100.00	0.00	0.363217	0.709013
K	cassette	PLK3	chr1	+	chr1:45270174-45270937	chr1:45270174-45270321;chr1:45270452-45270937		chr1:45270322-45270451			81.67	85.00	82.56	81.43	62.16	86.15	80.00	96.30	94.44	94.12	94.12	97.22	NA	94.03	91.43	87.91	89.19	97.47	52.94	86.46	82.54	70.54	61.18	80.13	NA	90.32	82.89	87.50	71.05	85.51	81.25	78.70	51.28	71.62	61.76	79.58	66.47	88.39	21.92	0.093509	0.658231
N	alternative_donor	ANKRD13D	chr11	+	chr11:67067971-67068460;chr11:67068367-67068460	chr11:67067595-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		89.22	87.29	86.67	92.86	90.40	NA	90.62	100.00	100.00	NA	90.91	NA	91.67	100.00	93.33	NA	95.00	NA	90.08	90.77	89.33	100.00	91.30	93.33	93.55	92.86	87.39	90.00	86.15	NA	92.11	86.96	91.74	96.77	87.65	93.94	91.15	92.48	1.34	0.156416	0.563271
K	intron_retention	SEC14L1	chr17	+	chr17:75209575-75209999				chr17:75209574-75209575;chr17:75209999-75210000		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.872776	1.000000
K	jcn_only_AA	STX10	chr19	-	chr19:13255218-13255390	chr19:13255301-13255390		chr19:13255218-13255300	chr19:13255217-13255218		100.00	90.44	100.00	100.00	93.24	100.00	95.38	100.00	85.71	100.00	100.00	100.00	98.48	100.00	NA	96.30	98.57	100.00	96.94	100.00	96.67	NA	95.16	81.82	91.11	NA	100.00	NA	93.67	93.33	100.00	96.30	96.70	100.00	88.89	100.00	96.04	100.00	3.96	0.012365	0.486024
K	intron_retention	ADPRHL2	chr1	+	chr1:36557427-36557510				chr1:36557426-36557427;chr1:36557510-36557511		3.03	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	11.11	0.00	0.00	0.00	1.16	NA	2.90	0.00	2.82	0.00	1.79	2.70	0.00	0.00	2.13	8.11	0.85	0.00	2.80	2.80	0.292180	1.000000
K	intron_retention		chr17	-	chr17:26944337-26945808				chr17:26944336-26944337;chr17:26945808-26945809		13.64	0.00	3.28	NA	0.00	NA	0.00	0.00	0.00	0.00	1.49	0.00	1.30	0.00	3.12	0.00	3.39	0.00	NA	6.25	0.00	8.33	4.65	0.00	NA	0.00	2.13	0.00	0.00	NA	9.09	3.03	0.00	5.71	2.63	3.85	0.00	3.12	3.12	0.392801	1.000000
K	alternative_last_exon	COQ2	chr4	-	chr4:84183809-84188738;chr4:84188362-84188738	chr4:84185517-84188738	chr4:84183742-84183808;chr4:84187850-84188361	chr4:84184977-84185516			100.00	92.59	90.00	NA	95.00	100.00	96.55	91.67	76.92	100.00	97.30	100.00	97.30	90.91	90.00	91.67	96.88	100.00	95.83	100.00	92.31	NA	100.00	NA	95.65	NA	92.31	NA	95.00	100.00	NA	NA	90.00	90.00	100.00	NA	95.74	95.84	0.09	0.736945	0.830738
K	intron_retention		chr7	-	chr7:100175536-100175781				chr7:100175535-100175536;chr7:100175781-100175782		7.84	1.03	7.59	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.16	1.02	4.55	0.00	0.00	0.00	0.00	5.33	0.00	7.14	4.35	5.00	0.00	3.15	5.22	0.00	6.67	0.00	3.17	8.49	2.17	0.00	3.85	6.15	0.52	3.16	2.65	0.342467	1.000000
N	alternative_acceptor	ERGIC3	chr20	+	chr20:34144043-34144775;chr20:34144043-34144647;chr20:34144043-34144335;chr20:34144043-34144725;chr20:34144043-34144761	chr20:34144043-34144743		chr20:34144336-34144647;chr20:34144648-34144725;chr20:34144726-34144743;chr20:34144744-34144761;chr20:34144762-34144775	chr20:34144647-34144648;chr20:34144725-34144726;chr20:34144743-34144744;chr20:34144761-34144762;chr20:34144775-34144776		95.29	98.41	94.52	97.78	97.87	98.79	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	97.58	98.15	95.80	97.67	96.61	100.00	96.72	98.28	92.42	100.00	97.32	98.84	95.45	95.95	97.80	95.89	98.68	97.44	98.10	98.22	0.11	0.596880	0.846397
N	jcn_only_AA	TRIP10	chr19	+	chr19:6750645-6751232;chr19:6750645-6751041;chr19:6750645-6751044;chr19:6750645-6751365	chr19:6750645-6751073		chr19:6751042-6751044;chr19:6751045-6751073;chr19:6751074-6751232;chr19:6751233-6751365	chr19:6751044-6751045;chr19:6751073-6751074;chr19:6751232-6751233;chr19:6751365-6751366		98.25	100.00	97.61	97.05	100.00	97.50	100.00	96.39	98.52	96.08	92.31	96.77	100.00	100.00	97.63	98.88	94.12	96.56	95.95	98.33	97.00	98.21	100.00	97.21	100.00	100.00	98.97	97.54	100.00	97.97	96.99	96.57	100.00	92.71	97.18	97.34	100.00	98.29	-1.71	0.298300	0.663989
K	alternative_last_exon	RPL31	chr2	+	chr2:101622534-101622819,chr2:101622534-101640086;chr2:101622534-101635459;chr2:101622534-101634350,chr2:101622534-101634320	chr2:101622534-101622811	chr2:101635460-101636190;chr2:101634351-101634751	chr2:101622812-101623729			92.59	95.12	91.84	97.17	97.16	99.05	90.00	94.12	91.43	86.11	84.91	93.10	87.84	93.33	87.50	93.98	80.56	84.00	94.92	95.65	94.62	90.20	86.96	88.00	97.63	94.44	85.71	91.84	93.64	94.38	96.88	92.31	98.16	94.44	92.31	94.94	95.02	94.28	-0.74	0.768653	0.856104
K	intron_retention		chr11	+	chr11:46398763-46399747				chr11:46398762-46398763;chr11:46399747-46399748		19.40	8.08	20.99	16.67	20.00	0.00	8.43	12.12	17.95	33.33	19.72	30.00	9.41	13.16	13.95	24.00	20.63	NA	8.05	16.22	4.05	38.46	22.73	15.38	12.68	21.95	16.67	15.38	20.45	NA	11.90	11.59	7.69	25.81	26.42	17.65	8.25	14.69	6.44	0.512398	1.000000
N	alternative_acceptor	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083141;chr19:1083066-1083151	chr19:1083066-1083274		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		24.14	0.00	13.89	NA	12.82	16.67	0.00	0.00	15.38	31.25	31.58	NA	14.81	20.00	15.52	0.00	27.03	NA	18.42	0.00	16.00	8.33	12.73	23.08	0.00	21.43	0.00	NA	17.86	7.69	13.33	0.00	26.09	7.14	0.00	0.00	7.41	16.66	9.26	0.622088	0.854460
K	intron_retention	SIGLEC1	chr20	-	chr20:3669875-3670246				chr20:3669874-3669875;chr20:3670246-3670247		15.45	12.73	14.29	NA	12.50	0.00	3.63	5.25	6.87	3.95	4.80	2.44	3.14	3.78	6.96	3.85	3.08	1.09	0.00	12.27	4.35	23.08	15.38	11.00	16.28	8.88	17.54	13.25	11.94	7.34	8.77	10.34	10.00	17.31	25.00	14.36	6.81	8.82	2.01	0.986565	1.000000
N	alternative_donor		chr20	-	chr20:33592374-33593510	chr20:33592374-33593497		chr20:33593498-33593510	chr20:33593510-33593511		100.00	100.00	100.00	91.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.85	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention		chr11	-	chr11:72408695-72408955				chr11:72408694-72408695;chr11:72408955-72408956		2.46	6.87	3.83	0.00	2.13	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.94	1.66	1.91	0.00	1.03	0.00	6.67	4.17	8.33	6.52	10.48	6.25	26.92	5.26	8.10	4.41	9.52	6.98	16.67	14.20	21.62	14.12	14.16	16.67	6.77	3.31	-3.45	0.664059	1.000000
N	cassette	COX5A	chr15	-	chr15:75216112-75230255;chr15:75219229-75230255	chr15:75216112-75221456,chr15:75219229-75221456;chr15:75221574-75230255		chr15:75221457-75221573			96.55	96.54	96.19	98.63	95.19	86.15	96.89	96.34	98.29	98.10	98.88	97.24	97.07	97.33	97.97	98.16	98.99	98.40	96.63	93.10	97.08	96.12	97.64	100.00	95.87	100.00	100.00	96.04	98.32	98.70	96.08	96.15	96.06	98.47	96.57	98.18	96.59	96.44	-0.14	0.953424	0.987421
K	cassette	VAV1	chr19	+	chr19:6822341-6825063	chr19:6822341-6822429;chr19:6822526-6825063		chr19:6822430-6822525			94.12	80.95	96.13	100.00	100.00	NA	92.68	96.88	96.10	96.38	97.10	97.17	95.40	93.33	94.34	95.65	93.42	95.83	100.00	95.37	96.67	95.65	93.75	96.39	100.00	98.97	94.67	96.83	90.24	96.47	100.00	99.05	100.00	100.00	94.44	99.00	97.70	96.12	-1.58	0.636033	0.867575
N	jcn_only_AA	MFSD10	chr4	-	chr4:2935367-2935479	chr4:2935391-2935479		chr4:2935367-2935390	chr4:2935366-2935367		100.00	78.57	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	PSMD7	chr16	+	chr16:74338293-74339186				chr16:74338292-74338293;chr16:74339186-74339187		7.04	15.38	7.08	2.75	3.33	2.25	0.97	0.00	0.00	0.00	0.00	0.00	0.00	1.25	1.69	0.83	0.00	0.00	10.96	6.32	6.84	1.48	3.59	3.28	25.00	2.04	3.81	2.52	2.60	0.00	5.43	6.56	9.33	3.70	1.66	2.55	10.14	3.73	-6.41	0.257346	1.000000
K	intron_retention	ZBTB17	chr1	-	chr1:16269234-16269558				chr1:16269233-16269234;chr1:16269558-16269559		4.48	0.00	5.88	5.00	5.88	3.70	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	1.18	0.00	0.00	0.00	3.85	5.26	4.00	5.26	5.71	1.79	0.00	4.00	6.67	3.64	0.00	2.00	7.59	5.81	6.25	2.63	5.88	6.98	0.00	4.24	4.24	0.448000	1.000000
K	intron_retention	SLC4A2	chr7	+	chr7:150771929-150772341				chr7:150771928-150771929;chr7:150772341-150772342		2.02	0.00	1.96	0.00	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.41	0.00	0.00	5.26	2.78	0.00	1.05	1.80	0.00	1.39	0.00	1.30	2.15	4.17	1.30	1.61	3.03	0.00	1.18	1.18	0.725747	1.000000
N	alternative_acceptor	SYMPK	chr19	-	chr19:46321405-46324641	chr19:46321482-46324641		chr19:46321405-46321481	chr19:46321404-46321405		0.00	8.06	0.00	0.00	3.03	0.00	0.00	0.00	2.70	0.00	0.00	NA	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	9.09	0.00	0.00	0.00	6.25	0.00	4.55	3.85	3.92	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.502168	0.793046
N	cassette	CC2D1B	chr1	-	chr1:52822115-52823197	chr1:52822115-52822672;chr1:52822799-52823197		chr1:52822673-52822798			94.44	84.00	88.10	NA	91.30	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	88.24	96.43	96.30	100.00	92.31	94.74	100.00	95.00	100.00	92.31	93.33	100.00	93.55	94.29	96.61	100.00	97.22	-2.78	0.938004	0.984560
K	alternative_first_exon	LRCH4	chr7	-	chr7:100180083-100183503	chr7:100180083-100182605	chr7:100183504-100183776	chr7:100182606-100182743			3.39	5.88	2.20	NA	0.00	NA	1.79	2.94	1.92	0.00	0.00	0.00	1.47	2.44	1.89	0.00	0.00	0.00	0.00	11.11	7.14	8.33	4.55	0.00	2.22	7.69	2.90	0.00	0.00	NA	0.00	1.82	6.25	0.00	0.00	3.23	2.00	3.17	1.16	0.418481	0.568167
N	jcn_only_AD	RNF31,RP11-468E2.4	chr14	+	chr14:24620880-24620994	chr14:24620893-24620994		chr14:24620880-24620892	chr14:24620879-24620880		0.00	0.00	1.82	NA	0.00	NA	4.76	0.00	0.00	0.00	0.00	3.57	0.00	0.00	1.49	0.00	0.00	0.00	NA	3.64	0.00	0.00	0.00	8.33	13.04	1.89	0.00	0.00	NA	0.00	6.82	5.00	0.00	5.41	4.35	0.00	0.00	0.94	0.94	0.610106	0.809875
K	intron_retention		chr18	+	chr18:21110262-21110350				chr18:21110261-21110262;chr18:21110350-21110351		12.05	6.85	12.50	0.00	3.28	0.00	20.83	4.76	0.00	20.51	25.00	6.90	13.04	6.06	5.56	10.53	14.29	3.70	1.61	12.00	6.25	14.58	8.06	13.04	10.00	6.67	8.45	9.38	14.71	7.27	12.21	10.83	8.00	13.64	11.11	10.26	9.00	9.34	0.34	0.894268	1.000000
K	jcn_only_AA	SLC25A3	chr12	+	chr12:98987519-98987756	chr12:98987519-98987752		chr12:98987753-98987756	chr12:98987756-98987757		100.00	100.00	100.00	93.33	95.65	NA	95.81	98.25	96.39	95.75	95.44	95.48	96.50	95.08	95.45	95.95	94.85	96.51	100.00	98.04	100.00	95.95	96.30	97.70	NA	100.00	98.41	96.49	96.97	100.00	89.19	96.34	95.45	96.91	98.91	99.02	96.50	98.15	1.65	0.697454	0.866530
N	cassette	VMO1	chr17	-	chr17:4688955-4689438;chr17:4688955-4692946;chr17:4688955-4689452;chr17:4688955-4692779	chr17:4688955-4689231;chr17:4689348-4692946,chr17:4689348-4689452,chr17:4689348-4689438,chr17:4689348-4692779		chr17:4689232-4689347			99.63	100.00	97.94	100.00	98.19	99.59	100.00	99.60	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	76.39	70.48	85.25	85.00	88.04	90.00	100.00	99.81	-0.19	0.736743	0.909046
K	jcn_only_AA	GPR108	chr19	-	chr19:6731066-6731209	chr19:6731123-6731209		chr19:6731066-6731122	chr19:6731065-6731066		89.05	96.95	94.34	91.55	93.75	90.79	92.98	92.21	91.04	90.00	88.41	91.30	96.00	88.52	94.74	92.42	94.37	88.57	94.06	95.74	94.69	97.01	93.98	96.49	97.50	89.47	95.42	93.10	91.18	95.00	95.21	95.39	93.52	96.97	94.52	96.81	95.03	90.84	-4.19	0.051016	0.663989
N	jcn_only_AD	AHNAK	chr11	-	chr11:62304040-62312388;chr11:62304040-62323659;chr11:62304040-62313037;chr11:62304040-62314131;chr11:62304040-62313016	chr11:62304040-62313215		chr11:62312389-62313016;chr11:62313017-62313037;chr11:62313038-62313215;chr11:62313216-62314131;chr11:62314132-62323659	chr11:62313016-62313017;chr11:62313037-62313038;chr11:62313215-62313216;chr11:62314131-62314132;chr11:62323659-62323660		0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	1.61	0.00	0.00	4.17	NA	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.659227	0.824391
N	cassette	RBM4	chr11	+	chr11:66407595-66413497;chr11:66384529-66413497	chr11:66384529-66410920,chr11:66407595-66410920;chr11:66411000-66413497		chr11:66410921-66410999			52.00	23.68	58.33	22.86	25.00	6.38	60.00	64.00	56.52	82.09	78.43	79.17	64.71	75.76	54.90	63.64	66.04	75.00	13.04	52.00	27.78	51.11	46.00	54.90	0.00	48.39	37.50	56.76	50.00	26.25	38.10	31.25	15.00	64.29	46.67	50.00	19.34	52.00	32.66	0.070893	0.628418
N	alternative_acceptor	KCNN4	chr19	-	chr19:44271242-44271691	chr19:44271259-44271691		chr19:44271242-44271258	chr19:44271241-44271242		8.13	5.88	9.29	3.39	3.50	3.34	2.25	1.64	3.57	1.85	2.90	2.06	2.63	1.45	5.26	1.27	1.20	1.29	6.35	3.85	2.34	4.76	3.87	4.01	6.82	7.81	6.17	3.16	3.53	2.24	8.33	4.35	6.03	3.12	3.85	3.29	5.96	5.83	-0.12	0.897568	0.963476
N	alternative_donor	EIF6,RRBP1	chr20	-	chr20:17594866-17595384;chr20:17594866-17595414	chr20:17594866-17595381		chr20:17595382-17595384;chr20:17595385-17595414	chr20:17595384-17595385;chr20:17595414-17595415		89.33	85.07	96.43	92.86	96.30	87.76	100.00	93.85	97.56	100.00	96.88	95.45	96.67	98.68	97.14	96.67	100.00	97.30	90.74	86.89	92.98	91.67	93.10	89.29	88.73	93.51	97.14	96.30	100.00	95.12	86.67	88.89	86.67	91.30	95.24	85.51	89.73	91.42	1.69	0.955667	0.984606
N	alternative_acceptor	COPS7A	chr12	+	chr12:57922793-57924937;chr12:57922793-57922946	chr12:57922793-57922942		chr12:57922943-57922946;chr12:57922947-57924937	chr12:57922946-57922947;chr12:57924937-57924938		98.11	97.25	98.31	93.75	96.10	NA	97.14	96.15	95.65	95.24	96.67	92.86	97.30	96.30	96.55	96.67	96.55	91.67	94.85	97.67	96.34	96.15	98.28	95.83	96.23	97.62	98.39	96.00	96.30	90.48	98.33	98.61	96.15	95.24	97.83	98.04	96.69	97.65	0.96	0.136296	0.635210
K	intron_retention	HPS1	chr10	-	chr10:100189647-100190327				chr10:100189646-100189647;chr10:100190327-100190328		2.78	0.00	8.57	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.17	0.00	3.30	0.00	1.96	0.00	0.87	0.00	0.00	2.94	0.00	0.00	3.45	9.09	NA	2.13	4.76	0.00	3.51	3.70	4.76	5.66	5.00	4.29	5.00	3.57	0.00	2.46	2.46	0.986607	1.000000
N	cassette	ETHE1	chr19	-	chr19:44013017-44030666	chr19:44013017-44015588;chr19:44015719-44030666		chr19:44015589-44015718			100.00	91.95	100.00	100.00	94.92	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	97.06	97.73	97.62	95.08	98.53	100.00	1.47	0.120460	0.709176
N	alternative_donor	HMGN3	chr6	-	chr6:79911444-79911992;chr6:79911444-79911785;chr6:79911444-79911810;chr6:79911444-79912033	chr6:79911444-79911772		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		7.14	1.48	5.56	0.00	2.97	0.00	0.00	0.00	0.00	0.00	1.44	0.85	0.93	0.00	2.13	0.00	0.00	0.00	2.15	0.00	3.23	2.22	2.08	1.79	1.12	0.00	5.77	1.67	2.54	0.92	0.00	2.13	1.25	1.89	3.12	1.27	1.19	0.00	-1.19	0.978189	0.994374
K	intron_retention	STAB1	chr3	+	chr3:52544252-52544364				chr3:52544251-52544252;chr3:52544364-52544365		1.94	7.64	3.92	NA	2.56	0.00	0.73	0.00	0.00	0.00	0.41	0.00	1.05	0.94	0.00	0.00	0.86	0.15	4.90	0.00	NA	0.00	1.71	0.75	5.84	0.00	1.09	0.87	2.92	0.53	0.00	0.00	8.05	0.76	2.37	0.36	5.37	0.00	-5.37	0.040288	1.000000
K	cassette	MR1	chr1	+	chr1:181019423-181024360	chr1:181019423-181022708;chr1:181022814-181024360		chr1:181022709-181022813			100.00	100.00	95.52	NA	100.00	100.00	100.00	100.00	100.00	95.00	96.00	100.00	100.00	100.00	99.18	100.00	100.00	100.00	100.00	97.73	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.36	97.44	96.15	100.00	100.00	98.33	100.00	100.00	0.00	0.989894	0.997468
K	intron_retention	DHPS	chr19	-	chr19:12790534-12790614				chr19:12790533-12790534;chr19:12790614-12790615		0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.79	11.11	9.76	0.00	0.00	0.00	0.00	0.00	0.00	0.975270	1.000000
K	intron_retention		chr19	+	chr19:36128255-36128343				chr19:36128254-36128255;chr19:36128343-36128344		0.96	0.00	5.06	0.00	0.00	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	1.12	1.83	0.00	1.40	2.56	0.55	0.00	0.00	0.00	0.85	0.00	3.70	4.17	2.42	0.00	2.00	1.25	0.28	0.48	0.20	0.986191	1.000000
K	jcn_only_AD	RPL14	chr3	+	chr3:40499239-40499380;chr3:40498966-40499380	chr3:40498855-40499380		chr3:40498855-40498965;chr3:40498966-40499238	chr3:40498854-40498855;chr3:40498965-40498966		87.50	91.27	83.33	89.36	92.86	83.78	95.11	85.71	84.85	92.45	94.27	95.33	96.60	86.67	84.21	93.24	96.04	94.41	96.00	96.55	88.76	90.74	94.12	91.26	91.67	88.46	80.95	93.46	93.44	95.28	70.73	79.41	92.86	89.29	87.65	91.67	93.98	87.09	-6.90	0.067981	0.592814
N	cassette	TNFRSF1B	chr1	+	chr1:12253156-12266796;chr1:12253156-12262023	chr1:12253156-12254640;chr1:12254676-12266796,chr1:12254676-12262023		chr1:12254641-12254675			97.71	100.00	99.08	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.24	99.48	100.00	100.00	100.00	99.19	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.54	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.49	100.00	100.00	0.00	0.230486	0.709176
N	alternative_acceptor	DGKZ,TSPAN32	chr11	+	chr11:46400051-46400546;chr11:46400051-46400443;chr11:46400051-46400540	chr11:46400051-46400224		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		11.76	6.92	15.56	0.00	12.20	NA	2.56	7.69	0.00	NA	3.23	NA	4.88	11.11	12.50	8.33	3.70	NA	6.67	9.68	8.00	13.33	9.52	0.00	11.94	3.33	8.77	NA	9.76	NA	8.70	14.81	7.25	11.11	11.54	6.25	6.79	9.19	2.39	0.283635	0.709013
K	jcn_only_AD	VCP	chr9	-	chr9:35068360-35071753;chr9:35068360-35072273	chr9:35068360-35072333		chr9:35071754-35072273;chr9:35072274-35072333	chr9:35072273-35072274;chr9:35072333-35072334		98.15	100.00	96.39	NA	100.00	NA	97.18	98.72	96.18	96.22	96.63	97.67	98.78	99.42	97.50	96.97	97.44	98.29	NA	100.00	100.00	100.00	100.00	95.65	100.00	100.00	98.44	100.00	98.44	100.00	95.24	97.37	NA	100.00	92.24	97.24	99.39	99.07	-0.32	0.696325	0.845069
N	alternative_acceptor	SCAMP2	chr15	-	chr15:75137935-75140940	chr15:75139265-75140940		chr15:75137935-75139264	chr15:75137934-75137935		3.51	4.46	3.66	0.00	1.02	0.00	0.42	0.00	0.00	0.00	1.40	0.00	1.12	0.00	1.96	0.93	0.42	0.00	1.75	1.43	0.00	2.13	2.38	2.17	5.13	1.47	3.51	1.89	2.47	1.75	1.64	2.44	2.53	3.12	4.20	2.42	2.14	1.45	-0.69	0.220030	0.671511
N	jcn_only_AA	PLEKHM2	chr1	+	chr1:16057753-16058393;chr1:16057753-16058383	chr1:16057753-16058444		chr1:16058384-16058393;chr1:16058394-16058444	chr1:16058393-16058394;chr1:16058444-16058445		7.14	12.16	12.77	9.84	10.53	6.90	1.64	4.27	4.30	2.36	3.17	1.19	4.81	3.31	3.53	4.40	4.46	2.83	12.50	13.33	7.59	12.07	11.67	10.95	0.00	5.33	6.31	5.83	7.55	4.90	16.28	16.13	17.81	12.36	10.88	9.96	8.48	6.23	-2.25	0.973388	0.990277
N	jcn_only_AA	DCAF15	chr19	+	chr19:14070708-14070795	chr19:14070708-14070769		chr19:14070770-14070795	chr19:14070795-14070796		2.50	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	5.71	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	LGALS9	chr17	+	chr17:25965381-25967570;chr17:25965381-25967668	chr17:25965381-25967597		chr17:25967571-25967597;chr17:25967598-25967668	chr17:25967597-25967598;chr17:25967668-25967669		94.40	94.85	100.00	90.48	92.41	94.74	92.60	94.11	92.20	93.58	93.95	94.54	93.98	94.73	94.44	95.36	93.06	96.03	93.62	94.78	90.91	93.44	93.75	95.95	94.59	94.06	93.88	94.81	95.24	96.74	89.34	92.31	88.68	92.54	95.10	94.47	93.80	94.25	0.45	0.691681	0.883019
K	alternative_last_exon	COX15	chr10	-	chr10:101456299-101476104;chr10:101473237-101476104	chr10:101474476-101476104	chr10:101471601-101473236	chr10:101473272-101474475			50.00	32.00	51.56	42.86	30.43	42.11	53.33	63.64	54.55	57.89	44.00	46.15	53.73	61.90	61.54	50.00	48.08	46.15	35.29	60.00	47.62	45.45	35.00	50.00	33.93	67.74	48.89	38.46	34.21	47.06	70.83	61.90	46.94	50.00	48.89	51.72	41.11	62.77	21.66	0.003340	0.103535
N	jcn_only_AD	FARSA	chr19	-	chr19:13035080-13035262	chr19:13035080-13035256		chr19:13035257-13035262	chr19:13035262-13035263		8.33	0.00	5.45	0.00	1.82	0.00	0.00	0.00	0.00	1.54	2.27	6.67	0.00	0.00	0.00	2.47	0.00	NA	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	9.68	0.00	0.00	0.00	0.511656	0.750327
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4094497-4095385;chr19:4095045-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4094608-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		2.80	1.98	5.08	6.90	4.29	6.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.35	2.50	4.47	5.71	3.36	5.56	5.83	2.78	5.45	2.44	2.86	2.94	6.54	2.63	3.90	3.92	3.90	0.99	2.67	2.64	-0.03	0.958069	0.990505
K	cassette	UBE2F	chr2	+	chr2:238925276-238939196;chr2:238903452-238939196;chr2:238925276-238944518	chr2:238925276-238933982,chr2:238903452-238933982;chr2:238934054-238939196,chr2:238934054-238944518		chr2:238933983-238934053			100.00	100.00	96.55	92.59	96.23	97.30	98.73	98.74	100.00	98.97	100.00	97.41	100.00	98.23	100.00	100.00	100.00	100.00	96.08	98.44	98.39	100.00	100.00	100.00	100.00	98.68	98.55	96.88	98.21	100.00	98.25	100.00	95.92	98.33	100.00	98.47	99.37	98.56	-0.81	0.761722	0.925284
N	jcn_only_AA		chr10	-	chr10:73577388-73578373;chr10:73578091-73578373;chr10:73576165-73578373;chr10:73577460-73578373	chr10:73577252-73578373					0.00	25.00	11.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	3.85	6.25	6.67	9.38	4.17	0.00	0.00	4.17	6.25	0.00	0.00	0.00	0.00	0.00	6.25	0.00	16.67	0.00	5.00	6.45	10.00	3.70	9.52	4.76	1.93	2.08	0.16	0.389621	0.663989
N	cassette	COMMD4	chr15	+	chr15:75631446-75632305;chr15:75631446-75632042;chr15:75631027-75632305	chr15:75631027-75631604,chr15:75631446-75631604;chr15:75631686-75632042,chr15:75631686-75632305		chr15:75631605-75631685			100.00	100.00	100.00	100.00	94.68	97.18	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.13	100.00	97.22	100.00	95.59	100.00	100.00	100.00	95.24	100.00	100.00	100.00	97.87	100.00	93.94	100.00	96.23	100.00	100.00	100.00	0.00	0.731748	0.906297
N	alternative_donor		chr16	-	chr16:1504467-1505147	chr16:1504467-1505134		chr16:1505135-1505147	chr16:1505147-1505148		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.75	100.00	NA	100.00	97.37	100.00	100.00	100.00	0.00	0.363217	0.650093
K	jcn_only_AA	GPAA1	chr8	+	chr8:145138944-145139188;chr8:145138944-145139013	chr8:145138944-145139036		chr8:145139014-145139036;chr8:145139037-145139188	chr8:145139036-145139037;chr8:145139188-145139189		100.00	100.00	100.00	100.00	100.00	NA	99.28	100.00	100.00	100.00	100.00	100.00	99.26	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	97.92	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	98.11	100.00	100.00	99.64	100.00	0.36	0.734889	0.881383
N	alternative_acceptor	JDP2	chr14	+	chr14:75904825-75928128;chr14:75904825-75928132	chr14:75904825-75911792		chr14:75911793-75928128;chr14:75928129-75928132	chr14:75928128-75928129;chr14:75928132-75928133		0.00	1.45	1.96	15.38	2.56	30.00	1.92	2.22	0.00	11.67	3.17	11.69	1.32	3.45	3.03	18.42	2.26	10.29	0.00	0.00	4.00	NA	2.33	14.29	0.00	0.00	0.00	26.67	5.77	47.06	0.00	0.00	0.00	13.04	3.28	16.67	0.66	0.00	-0.66	0.825026	0.940668
N	intron_retention		chr7	-	chr7:1037070-1037281				chr7:1037069-1037070;chr7:1037281-1037282		87.10	95.30	100.00	90.91	94.19	94.44	91.23	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	92.00	94.12	NA	95.08	94.12	100.00	100.00	95.79	100.00	90.52	96.77	89.58	90.91	100.00	100.00	92.50	93.02	93.28	95.45	97.83	100.00	94.18	95.44	1.26	0.837453	1.000000
K	alternative_acceptor	GPSM3	chr6	-	chr6:32159648-32159924	chr6:32159686-32159924		chr6:32159648-32159685	chr6:32159647-32159648		66.90	64.15	61.27	58.06	66.22	70.00	81.94	78.61	79.29	72.09	77.62	72.90	79.38	78.60	75.48	75.64	72.16	66.67	61.54	56.84	66.67	58.82	66.67	60.98	69.64	63.74	66.46	62.96	67.46	62.50	62.86	59.00	70.73	60.47	64.63	57.33	70.19	65.32	-4.86	0.516229	0.803032
N	cassette	RAPGEF1	chr9	-	chr9:134477537-134480317;chr9:134477537-134497182	chr9:134477537-134479347;chr9:134479441-134480317,chr9:134479441-134497182		chr9:134479348-134479440			0.00	0.00	1.56	NA	NA	NA	0.00	1.37	1.06	1.11	1.57	3.08	0.95	1.23	0.93	2.38	1.55	4.41	NA	3.23	NA	0.00	0.00	3.33	0.00	4.88	2.50	0.00	0.00	NA	5.56	3.33	NA	2.38	1.37	4.62	0.00	2.30	2.30	0.040072	0.500342
N	jcn_only_AD	NDUFS3,PTPMT1	chr11	+	chr11:47573986-47587457;chr11:47587349-47587457	chr11:47574259-47587457		chr11:47573986-47574258;chr11:47574259-47587348	chr11:47573985-47573986;chr11:47574258-47574259		0.00	0.00	5.56	13.64	0.00	0.00	0.00	2.78	5.19	0.00	0.00	0.00	0.00	0.00	4.30	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.55	7.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.227174	0.657607
K	intron_retention	EIF4A2	chr3	+	chr3:186505672-186506913				chr3:186505671-186505672;chr3:186506913-186506914		20.81	13.22	19.06	38.10	31.88	NA	4.88	5.00	2.50	6.67	12.22	6.15	7.50	8.96	7.73	21.33	14.77	11.11	14.63	21.66	19.19	45.45	29.71	42.00	20.59	19.46	18.65	50.00	35.29	43.64	23.50	16.48	18.84	42.95	35.62	40.56	13.93	20.13	6.21	0.796482	1.000000
N	jcn_only_AA		chr17	+	chr17:48762237-48764964	chr17:48762237-48764896		chr17:48764897-48764964	chr17:48764964-48764965		100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	jcn_only_AD		chr17	-	chr17:7495918-7496017	chr17:7495918-7496011		chr17:7496012-7496017	chr17:7496017-7496018		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.191268	0.657607
K	jcn_only_AD	TCIRG1	chr11	+	chr11:67808814-67809219	chr11:67808856-67809219		chr11:67808814-67808855	chr11:67808813-67808814		94.74	100.00	96.02	100.00	88.00	NA	92.65	92.91	93.26	97.30	95.27	91.67	94.77	94.40	94.69	97.39	95.37	96.43	100.00	95.78	96.08	97.62	94.68	94.12	100.00	96.79	97.66	100.00	97.06	88.89	94.29	96.46	96.77	97.18	94.79	96.33	98.38	94.57	-3.81	0.114138	0.646283
K	jcn_only_AA	WDR45	chrX	-	chrX:48933113-48933203;chrX:48933125-48933203	chrX:48933083-48933203		chrX:48933083-48933112;chrX:48933113-48933124	chrX:48933082-48933083;chrX:48933112-48933113		0.00	1.89	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	5.88	4.88	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor		chr16	+	chr16:28847807-28848071	chr16:28847812-28848071		chr16:28847807-28847811	chr16:28847806-28847807		93.55	100.00	95.35	90.91	100.00	NA	76.92	NA	100.00	61.54	70.00	NA	90.91	NA	89.47	75.00	73.33	NA	100.00	80.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	92.31	89.47	100.00	84.00	92.31	100.00	100.00	100.00	92.86	100.00	88.78	-11.22	0.407487	0.672556
K	intron_retention	VAT1	chr17	-	chr17:41166891-41167957				chr17:41166890-41166891;chr17:41167957-41167958		100.00	100.00	100.00	89.60	89.42	84.46	92.68	96.30	87.23	92.86	94.04	96.67	93.33	100.00	100.00	91.87	94.78	95.15	90.49	92.11	90.81	91.67	91.41	95.00	86.31	89.74	90.00	90.36	90.97	90.48	91.89	96.67	90.94	88.74	87.77	90.80	91.81	94.20	2.39	0.532696	1.000000
N	jcn_only_AA	PRR13,RP11-793H13.8	chr12	+	chr12:53836518-53837312;chr12:53836518-53837174;chr12:53836518-53837350;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837324		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		1.83	2.27	3.30	13.64	3.61	6.67	2.39	4.72	4.48	1.82	2.51	2.36	5.04	3.12	4.48	2.92	2.59	3.77	3.23	3.61	4.84	3.05	0.71	2.61	0.00	3.66	2.98	3.60	3.69	4.23	2.28	2.86	1.56	4.49	2.34	3.30	2.33	3.37	1.04	0.356366	0.663989
N	alternative_acceptor	TRIP10	chr19	+	chr19:6750645-6751232;chr19:6750645-6751041;chr19:6750645-6751365;chr19:6750645-6751073	chr19:6750645-6751044		chr19:6751042-6751044;chr19:6751045-6751073;chr19:6751074-6751232;chr19:6751233-6751365	chr19:6751044-6751045;chr19:6751073-6751074;chr19:6751232-6751233;chr19:6751365-6751366		1.19	0.00	2.10	2.78	0.00	2.18	0.00	3.70	0.74	3.64	3.85	3.01	NA	0.00	2.25	0.51	2.94	2.56	3.33	1.33	2.83	2.60	0.00	2.37	0.00	0.00	0.00	1.16	0.00	1.55	3.88	2.96	0.00	5.19	1.92	2.70	0.00	1.26	1.26	0.321756	0.709013
K	alternative_acceptor	RP11-51F16.8,STRADA	chr17	-	chr17:61781943-61783994	chr17:61782269-61783994		chr17:61781943-61782268	chr17:61781942-61781943		5.41	5.26	8.33	NA	5.56	NA	0.00	2.17	0.00	0.00	0.00	NA	2.86	4.76	1.89	0.00	0.00	NA	NA	4.35	0.00	NA	6.06	NA	0.00	2.63	4.76	6.25	7.69	0.00	4.17	2.08	NA	5.00	8.00	10.00	1.43	4.26	2.83	0.240948	0.695615
K	alternative_last_exon	C15orf57	chr15	-	chr15:40831555-40849414;chr15:40824502-40849414	chr15:40846327-40849414	chr15:40831428-40831554;chr15:40823540-40824501	chr15:40845298-40846326			90.00	97.30	89.19	100.00	100.00	100.00	91.18	95.08	91.30	96.15	94.12	96.00	93.75	93.75	96.30	98.00	92.86	96.97	96.67	89.80	97.06	94.74	97.44	100.00	84.00	86.49	84.21	96.77	94.59	96.67	91.43	91.18	96.30	97.22	97.14	95.65	95.03	90.72	-4.31	0.406878	0.567228
K	intron_retention	ABCC10	chr6	+	chr6:43414185-43414985				chr6:43414184-43414185;chr6:43414985-43414986		NA	14.29	20.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	8.33	0.00	NA	22.22	NA	21.43	6.25	4.76	NA	NA	NA	18.18	13.33	NA	12.50	18.75	16.67	7.14	7.29	0.15	0.823370	1.000000
K	alternative_acceptor	DYRK4	chr12	+	chr12:4721885-4722680	chr12:4721885-4722677		chr12:4722678-4722680	chr12:4722680-4722681		58.33	60.00	42.86	55.56	51.61	52.24	63.16	NA	50.00	52.00	46.67	52.00	64.00	NA	45.45	53.85	55.88	56.00	58.93	50.00	59.09	60.00	51.72	43.59	46.30	65.38	59.09	60.00	68.00	57.41	40.00	47.06	48.94	45.83	57.14	50.00	59.47	54.16	-5.30	0.604882	0.848883
K	intron_retention	SEC62	chr3	+	chr3:169710890-169711442				chr3:169710889-169710890;chr3:169711442-169711443		95.69	87.67	95.48	79.27	85.15	75.41	95.35	96.34	91.74	94.21	89.92	92.45	91.67	91.94	93.48	90.32	87.25	91.43	89.71	89.81	90.00	92.39	90.48	90.28	77.42	89.81	93.92	87.36	90.72	82.46	89.31	90.32	83.56	93.64	94.29	92.17	88.69	90.88	2.19	0.405511	1.000000
N	alternative_donor	SRSF9,STAC3	chr12	-	chr12:57642587-57642827;chr12:57642587-57642823	chr12:57642587-57642797		chr12:57642798-57642823;chr12:57642824-57642827	chr12:57642823-57642824;chr12:57642827-57642828		5.66	3.70	7.69	NA	0.00	NA	0.00	2.42	2.38	0.00	0.00	0.00	0.00	3.23	5.41	0.00	0.00	0.00	4.17	5.00	3.23	NA	0.00	NA	NA	5.62	6.67	0.00	2.86	0.00	2.44	3.85	5.88	10.00	4.76	0.00	3.70	4.12	0.42	0.363354	0.650093
K	intron_retention	MAN2C1	chr15	-	chr15:75649027-75649133				chr15:75649026-75649027;chr15:75649133-75649134		7.41	14.71	13.89	12.20	20.21	15.22	6.06	0.00	0.00	0.00	0.00	0.00	2.50	NA	22.22	0.00	3.03	0.00	6.25	10.53	11.32	9.38	18.57	5.13	10.61	8.33	14.71	21.05	15.09	11.54	10.34	11.63	14.81	11.90	17.24	7.25	8.43	8.33	-0.10	0.782286	1.000000
N	cassette	SUSD1	chr9	-	chr9:114814719-114840817;chr9:114814719-114825216;chr9:114804241-114825216	chr9:114814719-114820707,chr9:114804241-114820707;chr9:114820967-114840817,chr9:114820967-114825216		chr9:114820708-114820966			100.00	100.00	100.00	100.00	100.00	NA	98.39	100.00	97.30	100.00	100.00	100.00	100.00	100.00	91.89	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.299187	0.709176
N	alternative_donor	ARPC2	chr2	+	chr2:219082268-219090642;chr2:219085422-219090642	chr2:219081978-219090642		chr2:219081978-219082267;chr2:219082268-219085421	chr2:219081977-219081978;chr2:219082267-219082268		1.68	0.00	1.42	4.55	0.00	NA	1.49	0.88	0.00	1.92	0.29	0.00	0.79	0.57	1.41	0.33	0.23	1.28	4.17	0.99	5.63	1.61	1.61	1.32	0.00	0.98	1.67	2.54	2.63	3.53	1.06	2.21	0.00	2.21	2.51	1.00	0.40	0.98	0.59	0.946023	0.984606
N	jcn_only_AA	SIRT7	chr17	-	chr17:79872407-79872479;chr17:79872381-79872479	chr17:79872333-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		0.00	2.67	8.06	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.33	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	11.54	0.00	10.00	4.00	0.00	0.00	0.00	0.00	7.37	5.66	2.56	0.00	0.00	0.00	0.00	0.00	0.888501	0.960308
N	cassette	FBXO18	chr10	+	chr10:5963533-5966273	chr10:5963533-5965583;chr10:5965660-5966273		chr10:5965584-5965659			100.00	100.00	97.83	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	95.00	88.89	100.00	100.00	NA	100.00	92.86	93.33	100.00	100.00	100.00	95.35	81.82	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	C14orf119	chr14	+	chr14:23564829-23566850;chr14:23564829-23566978	chr14:23564829-23566866		chr14:23566851-23566866;chr14:23566867-23566978	chr14:23566866-23566867;chr14:23566978-23566979		98.41	100.00	97.70	95.45	96.23	NA	100.00	98.33	100.00	98.11	98.57	100.00	97.70	98.36	98.39	98.51	98.51	95.65	100.00	93.85	92.68	97.67	95.50	91.89	100.00	96.97	98.57	97.44	96.84	96.67	92.73	96.25	96.00	96.67	94.29	96.00	100.00	97.65	-2.35	0.075657	0.585944
N	alternative_donor	GGA1	chr22	+	chr22:38013056-38014454;chr22:38013375-38014454	chr22:38013005-38014454		chr22:38013005-38013055;chr22:38013056-38013374	chr22:38013004-38013005;chr22:38013055-38013056		93.94	84.62	88.89	NA	91.67	NA	95.45	90.91	95.65	95.00	91.11	100.00	91.53	87.50	83.33	97.14	88.00	NA	NA	94.44	91.67	90.91	86.67	89.47	77.78	83.87	86.96	85.00	85.29	NA	88.89	89.36	NA	86.79	83.33	80.77	88.08	89.90	1.83	0.574067	0.799662
N	alternative_donor	GAA	chr17	+	chr17:78075690-78078353;chr17:78075679-78078353	chr17:78075725-78078353		chr17:78075679-78075689;chr17:78075690-78075724	chr17:78075678-78075679;chr17:78075689-78075690		6.25	6.67	0.00	NA	NA	NA	4.44	4.76	5.00	5.71	5.56	3.57	5.00	0.00	0.00	4.35	2.70	4.76	NA	5.88	NA	7.14	2.86	4.00	0.00	4.55	5.26	0.00	5.56	0.00	NA	0.00	NA	0.00	4.76	3.45	4.72	4.76	0.04	0.890255	0.977754
N	jcn_only_AA	PFKL	chr21	+	chr21:45739299-45739966	chr21:45739299-45739933		chr21:45739934-45739966	chr21:45739966-45739967		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	HMGB2	chr4	-	chr4:174254821-174255396;chr4:174254821-174255007	chr4:174254821-174255422		chr4:174255008-174255396;chr4:174255397-174255422	chr4:174255396-174255397;chr4:174255422-174255423		100.00	100.00	83.33	NA	NA	NA	91.67	86.36	90.00	86.67	92.98	NA	88.61	90.48	86.05	82.61	91.30	NA	NA	84.62	NA	NA	NA	NA	100.00	68.75	94.74	NA	100.00	NA	83.33	100.00	NA	NA	100.00	NA	95.84	85.49	-10.34	0.099770	0.639657
K	cassette	NAP1L4	chr11	-	chr11:2966877-2972488	chr11:2966877-2970456;chr11:2970495-2972488		chr11:2970457-2970494			18.18	22.22	36.36	NA	33.33	NA	32.08	18.52	29.27	52.78	45.76	36.84	40.85	28.57	26.79	36.84	34.25	NA	36.36	30.43	28.57	27.78	42.37	35.29	33.33	34.62	30.95	40.62	44.44	31.58	11.76	24.32	41.18	18.18	30.43	19.23	34.84	23.55	-11.30	0.044180	0.526718
N	alternative_donor	IKBKB	chr8	+	chr8:42186733-42188431	chr8:42186745-42188431		chr8:42186733-42186744	chr8:42186732-42186733		7.14	8.57	2.33	27.27	8.70	54.55	2.86	6.25	4.17	0.00	0.00	NA	2.27	0.00	0.00	0.00	4.00	NA	23.53	4.00	13.33	0.00	3.33	0.00	29.63	6.67	2.94	0.00	8.00	0.00	10.00	6.45	17.39	4.00	6.06	3.70	12.98	6.46	-6.52	0.133808	0.548797
K	jcn_only_AA	RNF167	chr17	+	chr17:4846237-4847852	chr17:4846237-4846473					93.33	96.92	100.00	91.67	100.00	100.00	100.00	100.00	96.88	97.14	97.83	100.00	98.88	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	80.77	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	97.50	99.44	100.00	0.56	0.621595	0.831281
K	intron_retention		chr11	+	chr11:47256486-47256820				chr11:47256485-47256486;chr11:47256820-47256821		47.62	55.88	44.19	50.00	41.67	33.33	11.11	15.38	0.00	15.00	0.00	NA	9.76	0.00	19.44	8.70	6.45	9.09	36.84	42.11	45.83	38.46	36.00	27.78	53.85	23.33	51.35	NA	17.65	16.67	53.57	34.04	45.45	42.11	43.75	33.33	41.15	32.72	-8.43	0.990421	1.000000
K	intron_retention	TMEM259	chr19	-	chr19:1011992-1012064				chr19:1011991-1011992;chr19:1012064-1012065		5.94	0.00	5.36	0.00	2.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	4.17	6.38	3.88	4.35	0.00	4.17	1.79	3.08	0.00	1.85	12.90	6.57	7.14	1.33	1.12	3.39	0.00	5.05	5.05	0.587038	1.000000
K	intron_retention	C20orf24	chr20	+	chr20:35236222-35236292				chr20:35236221-35236222;chr20:35236292-35236293		51.16	NA	54.55	50.00	25.00	NA	0.00	17.07	13.04	NA	0.00	NA	9.09	22.50	20.59	16.67	NA	NA	36.36	45.24	34.78	46.67	33.33	NA	NA	46.15	50.00	53.85	NA	47.06	66.67	47.27	33.33	48.15	40.91	38.64	21.21	45.70	24.48	0.236075	1.000000
N	alternative_acceptor	C12orf45	chr12	+	chr12:105385627-105388255	chr12:105385627-105386109		chr12:105386110-105388255	chr12:105388255-105388256		10.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.26	4.76	0.00	0.00	0.00	0.00	0.00	2.63	2.63	0.210970	0.671156
N	jcn_only_AD	LGALS3	chr14	+	chr14:55596835-55604087;chr14:55590821-55604087;chr14:55597645-55604087;chr14:55596366-55604087;chr14:55596019-55604087;chr14:55590877-55604087	chr14:55600111-55604087		chr14:55590821-55590876;chr14:55590877-55596018;chr14:55596019-55596365;chr14:55596366-55596834;chr14:55596835-55597644;chr14:55597645-55600110	chr14:55590820-55590821;chr14:55590876-55590877;chr14:55596018-55596019;chr14:55596365-55596366;chr14:55596834-55596835;chr14:55597644-55597645		0.00	0.00	0.00	4.38	3.46	0.00	1.41	0.00	0.00	7.23	7.08	6.40	1.31	0.00	0.00	1.11	3.47	4.84	0.00	0.93	0.00	2.79	2.50	3.30	0.00	0.00	2.04	3.33	2.08	3.77	0.00	0.00	0.00	2.09	1.74	2.26	0.00	0.00	0.00	0.388178	0.657607
K	jcn_only_AA	KHSRP	chr19	-	chr19:6413561-6415390	chr19:6415313-6415390		chr19:6413561-6415312	chr19:6413560-6413561		100.00	100.00	98.33	82.35	82.86	100.00	98.98	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.31	100.00	100.00	56.67	100.00	82.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	100.00	100.00	94.74	63.33	94.83	100.00	100.00	99.49	100.00	0.51	0.183739	0.663989
K	jcn_only_AA	MRPL52	chr14	+	chr14:23299158-23299261	chr14:23299158-23299258		chr14:23299259-23299261	chr14:23299261-23299262		68.42	76.19	75.00	NA	70.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	80.00	NA	78.12	69.23	84.62	NA	93.75	NA	66.67	100.00	100.00	NA	60.00	NA	100.00	60.00	71.43	NA	NA	NA	73.81	84.62	10.81	0.302453	0.663989
K	intron_retention		chr3	-	chr3:49843431-49843505				chr3:49843430-49843431;chr3:49843505-49843506		4.76	2.88	0.00	0.00	0.00	2.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	2.38	0.00	0.00	NA	1.37	3.49	1.32	NA	0.00	9.09	0.00	0.97	0.00	10.00	0.00	3.91	3.66	4.65	0.00	0.00	0.00	0.00	0.00	2.71	2.71	0.251272	1.000000
N	jcn_only_AD	DNAJC19	chr3	-	chr3:180703785-180704730;chr3:180703785-180704735	chr3:180703785-180704785		chr3:180704731-180704735;chr3:180704736-180704785	chr3:180704735-180704736;chr3:180704785-180704786		4.55	18.92	4.76	NA	16.13	12.50	11.11	NA	6.45	4.35	6.67	5.26	14.29	16.67	4.17	5.26	7.89	5.00	15.38	6.67	12.12	14.29	8.00	30.00	0.00	20.00	9.68	10.00	11.43	5.00	NA	8.70	12.90	14.29	18.18	6.25	13.59	11.67	-1.92	0.978803	0.993037
K	intron_retention	NUP85	chr17	+	chr17:73231297-73231672				chr17:73231296-73231297;chr17:73231672-73231673		0.00	4.85	7.32	2.44	3.97	1.41	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	3.37	0.00	1.33	0.00	2.56	6.67	6.97	0.00	9.09	0.00	6.76	8.33	13.33	6.98	4.02	7.14	1.64	0.00	3.69	0.00	-3.69	0.875435	1.000000
K	cassette	LILRB1	chr19	+	chr19:55144770-55145421	chr19:55144770-55145088;chr19:55145140-55145421		chr19:55145089-55145139			98.94	100.00	98.57	NA	NA	NA	100.00	99.13	98.68	100.00	100.00	100.00	100.00	99.32	100.00	100.00	100.00	100.00	100.00	98.73	100.00	100.00	94.59	97.67	100.00	99.43	100.00	100.00	95.00	100.00	99.47	100.00	NA	100.00	100.00	100.00	100.00	99.22	-0.78	0.000949	0.108918
N	jcn_only_AD	TMEM256	chr17	-	chr17:7306710-7306945;chr17:7306710-7306931;chr17:7306710-7306924	chr17:7306710-7306976		chr17:7306925-7306931;chr17:7306932-7306945;chr17:7306946-7306976	chr17:7306931-7306932;chr17:7306945-7306946;chr17:7306976-7306977		100.00	100.00	97.14	94.12	100.00	95.65	98.88	100.00	100.00	98.72	99.02	98.63	100.00	100.00	90.62	100.00	96.77	100.00	96.55	100.00	95.45	100.00	100.00	93.75	100.00	NA	100.00	92.59	97.96	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.237569	0.657607
K	jcn_only_AA	C17orf62	chr17	-	chr17:80403833-80404498;chr17:80403757-80404498	chr17:80403837-80404498		chr17:80403757-80403832;chr17:80403833-80403836	chr17:80403756-80403757;chr17:80403832-80403833		96.96	97.89	94.58	83.33	90.00	90.91	97.81	95.44	95.30	94.87	96.34	92.16	93.42	96.50	94.87	97.83	96.10	100.00	91.43	92.11	96.47	86.96	89.74	89.47	94.12	95.97	94.88	80.95	91.94	92.31	90.79	92.57	90.91	89.19	95.83	93.86	93.77	95.70	1.93	0.825837	0.929528
N	alternative_acceptor	HCLS1	chr3	-	chr3:121366296-121376125;chr3:121366330-121376125;chr3:121366219-121376125;chr3:121372741-121376125	chr3:121375114-121376125		chr3:121366219-121366295;chr3:121366296-121366329;chr3:121366330-121372740;chr3:121372741-121375113	chr3:121366218-121366219;chr3:121366295-121366296;chr3:121366329-121366330;chr3:121372740-121372741		0.72	2.20	0.62	5.00	1.45	NA	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.67	0.33	0.00	7.41	0.00	1.92	0.00	0.00	0.00	7.69	0.00	0.61	0.00	0.56	0.00	0.00	0.89	6.67	0.75	0.55	0.00	4.44	0.33	-4.11	0.059028	0.571964
K	intron_retention	LILRB5	chr19	-	chr19:54757932-54758227				chr19:54757931-54757932;chr19:54758227-54758228		6.90	25.00	NA	NA	12.50	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.26	NA	0.00	0.00	0.00	0.00	6.06	NA	0.00	13.46	6.25	11.11	5.74	7.69	7.14	10.13	2.38	3.45	NA	0.00	9.52	13.64	5.56	0.00	5.50	5.50	0.982208	1.000000
K	jcn_only_AD	HM13	chr20	+	chr20:30156028-30156922	chr20:30156084-30156922		chr20:30156028-30156083	chr20:30156027-30156028		63.89	62.26	60.00	52.17	61.11	70.73	70.00	60.00	76.00	60.00	48.15	55.56	71.43	75.00	60.00	54.55	52.00	50.00	77.42	68.75	75.47	54.55	56.52	78.57	72.34	65.00	67.86	50.00	71.43	70.83	61.54	66.67	71.43	56.25	59.09	66.67	71.43	64.44	-6.99	0.119198	0.657607
K	intron_retention		chr1	-	chr1:183536124-183536338				chr1:183536123-183536124;chr1:183536338-183536339		2.68	2.78	1.72	0.00	2.08	0.00	0.30	0.00	0.00	0.00	0.00	0.00	0.50	0.41	0.00	0.48	0.27	0.00	0.00	1.91	2.08	2.72	2.99	0.42	5.56	2.38	3.23	2.16	1.67	0.18	0.90	3.80	0.00	2.99	3.30	0.22	0.40	1.41	1.00	0.911089	1.000000
K	intron_retention	MFSD12	chr19	-	chr19:3546167-3547269				chr19:3546166-3546167;chr19:3547269-3547270		0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	16.67	NA	NA	0.00	0.00	8.33	NA	0.00	0.00	0.00	4.55	0.00	4.17	4.17	0.501965	1.000000
N	cassette	GPATCH3	chr1	-	chr1:27217718-27219160	chr1:27217718-27218901;chr1:27219030-27219160		chr1:27218902-27219029			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.952073	0.987421
N	alternative_acceptor	ITPA,RTEL1,RTEL1-TNFRSF6B	chr20	+	chr20:3199279-3202486	chr20:3199279-3202065		chr20:3202066-3202486	chr20:3202486-3202487		6.67	6.30	8.33	4.44	5.97	9.30	1.61	7.69	0.00	0.00	1.69	3.23	1.20	0.00	5.26	1.43	1.33	4.65	1.82	5.56	7.89	9.09	4.26	6.45	3.66	14.29	8.33	9.52	9.23	9.52	5.26	5.56	3.03	3.64	4.23	1.75	2.42	6.12	3.69	0.119533	0.606219
N	alternative_acceptor	TFEC	chr7	-	chr7:115580986-115581946;chr7:115580499-115581946	chr7:115580778-115581946		chr7:115580499-115580777;chr7:115580778-115580985	chr7:115580498-115580499;chr7:115580777-115580778		0.00	2.78	0.00	3.03	1.72	4.88	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.37	0.00	0.00	0.00	0.00	5.56	0.00	1.72	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	1.82	0.00	2.78	0.00	-2.78	0.092369	0.597021
K	intron_retention	SNX14	chr6	-	chr6:86217778-86223517				chr6:86217777-86217778;chr6:86223517-86223518		2.99	0.00	5.26	0.00	3.39	2.99	0.00	0.00	2.27	0.00	0.00	0.00	0.00	1.75	6.98	0.00	0.00	NA	1.89	4.35	3.53	7.14	2.50	0.00	0.00	3.03	2.33	0.00	3.26	5.26	0.00	1.79	2.06	3.64	1.52	4.44	0.00	2.37	2.37	0.620039	1.000000
N	cassette	THEMIS2	chr1	+	chr1:28203240-28209023;chr1:28203240-28211805;chr1:28206684-28211805;chr1:28206566-28211805	chr1:28206684-28208481,chr1:28206566-28208481,chr1:28203240-28208481;chr1:28208589-28209023,chr1:28208589-28211805		chr1:28208482-28208588			21.73	7.41	17.06	NA	14.81	NA	61.64	68.97	52.76	69.70	69.57	72.58	67.69	83.68	74.55	77.27	83.33	91.67	5.88	22.32	10.13	25.00	21.84	40.91	30.00	28.33	15.87	55.00	32.20	47.37	21.65	21.62	3.70	37.84	36.17	50.72	18.70	25.32	6.62	0.490796	0.776366
K	intron_retention		chr12	-	chr12:48177670-48177861				chr12:48177669-48177670;chr12:48177861-48177862		6.90	15.62	7.25	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.33	0.00	NA	5.00	0.00	0.00	0.00	7.69	0.00	11.11	3.51	0.00	8.11	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.974279	1.000000
K	intron_retention	MED25	chr19	+	chr19:50331805-50332226				chr19:50331804-50331805;chr19:50332226-50332227		3.39	0.00	10.64	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	2.35	3.92	0.00	0.00	3.03	2.94	2.86	NA	9.09	0.00	7.32	0.00	1.18	1.18	0.416515	1.000000
K	intron_retention	CSK	chr15	+	chr15:75092847-75093021				chr15:75092846-75092847;chr15:75093021-75093022		2.84	6.96	5.38	0.00	2.86	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	3.12	3.43	0.00	0.00	3.14	0.00	4.00	3.11	5.38	0.00	2.25	0.00	2.59	6.59	4.35	4.35	4.96	3.57	3.56	2.71	-0.85	0.728273	1.000000
N	jcn_only_AA	ANKRD13D,IL18BP	chr11	+	chr11:67057685-67057792;chr11:67057685-67057800	chr11:67057685-67057778		chr11:67057779-67057792;chr11:67057793-67057800	chr11:67057792-67057793;chr11:67057800-67057801		3.92	11.76	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.88	NA	0.00	0.00	5.88	NA	0.00	NA	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.550055	0.783383
N	mutually_exclusive	AD000671.6,IGFLR1	chr19	-	chr19:36230528-36231280,chr19:36231466-36231924	chr19:36230528-36230610,chr19:36230990-36231924	chr19:36231281-36231465	chr19:36230611-36230989			96.97	100.00	96.15	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.88	100.00	100.00	100.00	98.05	86.96	95.24	100.00	97.46	100.00	95.72	100.00	100.00	100.00	100.00	96.83	91.89	96.94	96.82	100.00	96.39	97.22	99.03	98.48	-0.54	0.333285	0.510003
N	alternative_acceptor	UBL7	chr15	-	chr15:74740929-74741526;chr15:74740942-74741526	chr15:74740900-74741526		chr15:74740900-74740928;chr15:74740929-74740941	chr15:74740899-74740900;chr15:74740928-74740929		0.00	25.45	26.09	7.69	17.07	13.64	18.18	NA	20.00	30.77	22.73	16.67	27.59	NA	6.67	NA	16.00	23.08	30.77	12.50	21.62	NA	22.73	NA	23.26	13.33	18.18	NA	19.05	NA	11.11	15.38	26.79	0.00	18.75	21.05	26.12	11.80	-14.31	0.006633	0.405868
K	intron_retention	MDM2	chr12	+	chr12:69237045-69237520				chr12:69237044-69237045;chr12:69237520-69237521		72.50	76.00	81.11	76.47	73.86	70.00	83.33	84.62	74.51	90.70	87.18	85.71	80.65	67.74	80.70	77.27	83.33	100.00	82.98	89.19	85.42	87.69	84.91	84.21	87.23	75.00	75.00	86.11	87.50	75.00	80.00	81.82	82.05	68.84	72.30	69.92	82.52	77.50	-5.02	0.884325	1.000000
K	intron_retention	STAT6	chr12	-	chr12:57493687-57493778				chr12:57493686-57493687;chr12:57493778-57493779		2.38	8.33	6.52	NA	4.00	NA	0.00	0.56	0.00	0.00	0.00	0.00	0.90	0.59	1.55	0.00	1.06	0.00	17.65	1.92	12.50	2.70	2.63	2.60	11.11	2.75	4.12	2.22	1.45	4.44	4.88	3.26	12.50	3.23	4.00	2.99	9.72	2.15	-7.57	0.758237	1.000000
N	coord_cassette	MICAL1	chr6	-	chr6:109768926-109769934	chr6:109768926-109769077;chr6:109769167-109769405;chr6:109769597-109769934		chr6:109769078-109769166;chr6:109769406-109769596			97.50	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	90.91	100.00	96.15	100.00	100.00	100.00	0.00	0.490479	0.708225
K	intron_retention	PPP4C	chr16	+	chr16:30096177-30096253				chr16:30096176-30096177;chr16:30096253-30096254		3.26	0.77	2.92	4.06	2.69	2.71	0.00	1.74	1.77	4.24	0.68	1.33	0.00	1.71	0.96	3.27	1.53	0.00	1.53	3.49	2.51	4.35	4.74	3.51	2.87	2.82	1.68	2.94	2.51	1.80	7.17	3.88	3.70	3.79	0.61	3.74	1.15	3.04	1.89	0.338759	1.000000
K	coord_cassette	TRIM28	chr19	+	chr19:59056465-59058742	chr19:59056465-59056791;chr19:59056905-59057130;chr19:59057264-59058742		chr19:59056792-59056904;chr19:59057131-59057263			95.65	100.00	98.39	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.68	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	97.73	NA	100.00	100.00	96.97	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	IFFO1	chr12	-	chr12:6657712-6657833				chr12:6657711-6657712;chr12:6657833-6657834		3.85	5.19	10.00	NA	2.08	NA	4.08	4.76	0.00	0.00	2.53	NA	3.85	9.68	0.00	0.00	1.85	NA	4.00	4.55	0.00	0.00	7.14	7.69	13.43	0.00	0.00	0.00	2.48	0.00	7.69	6.52	15.62	6.67	6.94	4.35	4.63	4.65	0.02	0.748893	1.000000
K	intron_retention		chr16	+	chr16:697545-697782				chr16:697544-697545;chr16:697782-697783		11.11	3.23	20.00	4.02	3.28	2.48	0.00	0.00	0.00	1.33	1.33	0.00	0.00	0.00	0.00	1.63	0.00	0.00	3.33	9.09	3.97	2.47	3.90	2.04	3.26	NA	7.14	2.08	4.46	0.00	14.29	14.29	5.93	3.61	2.17	2.63	3.25	9.09	5.84	0.579419	1.000000
K	cassette	TMEM222	chr1	+	chr1:27657296-27658560	chr1:27657296-27657475;chr1:27657629-27658560		chr1:27657476-27657628			8.33	4.76	8.51	NA	0.00	NA	0.00	NA	10.00	6.25	7.69	NA	2.94	0.00	9.38	3.33	11.11	NA	NA	3.70	0.00	5.00	3.03	7.14	8.33	NA	2.56	15.38	3.45	14.29	0.00	0.00	NA	0.00	3.03	8.33	3.85	1.85	-2.00	0.717627	0.899501
K	jcn_only_AA	TUBGCP2	chr10	-	chr10:135096689-135097385	chr10:135096726-135097385		chr10:135096689-135096725	chr10:135096688-135096689		97.30	100.00	96.34	92.31	94.74	90.91	100.00	100.00	100.00	100.00	97.75	100.00	96.91	100.00	91.43	98.25	98.86	100.00	96.59	95.24	97.92	100.00	93.41	100.00	100.00	100.00	95.40	93.55	95.18	94.12	98.04	94.59	92.77	93.75	98.08	96.08	98.45	99.02	0.57	0.626948	0.835767
N	jcn_only_AA	FDFT1	chr8	+	chr8:11689180-11695896	chr8:11689180-11690554		chr8:11690555-11695896	chr8:11695896-11695897		0.00	0.00	0.00	NA	0.00	NA	1.75	9.09	0.00	2.22	1.54	0.00	0.00	15.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.54	4.54	0.095606	0.663989
K	intron_retention	CLCN7	chr16	-	chr16:1498486-1498681				chr16:1498485-1498486;chr16:1498681-1498682		4.00	2.86	3.36	0.00	2.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	1.37	0.00	0.00	5.26	2.99	2.50	5.56	2.84	4.26	7.55	2.63	2.56	1.85	1.01	0.00	5.41	3.94	9.09	5.05	4.59	4.65	4.06	2.81	-1.25	0.687512	1.000000
K	jcn_only_AA	REXO1	chr19	-	chr19:1817329-1817705	chr19:1817458-1817705		chr19:1817329-1817457	chr19:1817328-1817329		0.00	14.29	0.00	NA	NA	NA	0.00	15.79	4.76	4.55	13.33	7.14	0.00	0.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.56	0.00	NA	0.00	0.00	17.65	NA	0.00	13.64	3.85	0.00	9.52	0.00	6.06	0.00	0.00	0.00	0.786842	0.908316
K	jcn_only_AD	RIC8A	chr11	+	chr11:213419-214229	chr11:213498-214229		chr11:213419-213497	chr11:213418-213419		0.00	5.56	2.33	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	1.30	0.00	1.92	0.00	0.00	0.00	0.00	4.11	0.00	0.00	0.00	0.00	3.57	0.00	1.75	1.39	0.00	0.00	0.00	0.00	0.486038	0.731805
N	alternative_donor	CREM	chr10	+	chr10:35495980-35500583	chr10:35500318-35500583		chr10:35495980-35500317	chr10:35495979-35495980		16.33	16.67	25.00	10.53	11.11	4.35	10.00	12.35	12.50	9.09	8.33	5.13	14.29	12.50	13.04	NA	NA	6.25	NA	16.67	11.54	NA	NA	16.67	8.33	13.91	16.67	20.00	16.67	7.14	26.32	28.95	NA	28.89	15.79	22.73	12.14	15.12	2.97	0.198810	0.570816
N	coord_cassette	AHSA1	chr14	+	chr14:77929103-77935419	chr14:77929103-77930940;chr14:77931030-77931881;chr14:77932011-77935419		chr14:77930941-77931029;chr14:77931882-77932010			100.00	72.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.647127
K	intron_retention		chr22	-	chr22:39710852-39711373				chr22:39710851-39710852;chr22:39711373-39711374		3.88	0.31	2.22	0.89	0.28	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.00	0.16	0.00	0.18	0.50	3.26	0.64	1.56	0.64	1.59	0.48	1.89	1.23	0.40	0.33	0.31	7.87	6.35	0.65	0.63	0.59	0.64	0.40	2.57	2.18	0.212744	1.000000
K	alternative_donor	PRR13,RP11-793H13.8	chr12	+	chr12:53835585-53836478;chr12:53835602-53836478	chr12:53835577-53836478		chr12:53835577-53835584;chr12:53835585-53835601	chr12:53835576-53835577;chr12:53835584-53835585		95.38	91.11	90.38	95.45	93.33	NA	90.12	94.81	91.03	94.40	92.17	94.44	89.62	94.03	92.91	93.46	93.21	95.19	93.33	94.29	94.05	90.77	91.94	89.09	81.25	92.68	93.24	90.74	94.00	90.00	94.62	93.02	96.55	92.75	94.19	92.59	90.62	94.46	3.84	0.117098	0.529698
K	intron_retention	USP11	chrX	+	chrX:47106819-47107009				chrX:47106818-47106819;chrX:47107009-47107010		2.50	0.00	7.84	4.00	7.14	5.13	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.50	0.00	0.00	0.00	0.00	14.29	7.69	8.70	8.33	8.00	NA	4.84	7.25	0.00	8.00	5.88	6.00	11.48	7.14	9.09	11.11	7.32	0.00	3.67	3.67	0.944668	1.000000
N	alternative_acceptor	RBM42	chr19	+	chr19:36123904-36123978;chr19:36123904-36124002	chr19:36123904-36123999		chr19:36123979-36123999;chr19:36124000-36124002	chr19:36123999-36124000;chr19:36124002-36124003		0.00	0.00	0.00	0.00	0.00	NA	6.67	NA	10.00	0.00	3.12	5.88	0.00	9.09	0.00	0.00	0.00	14.29	NA	0.00	0.00	NA	0.00	NA	NA	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.953064	0.990505
K	coord_cassette	PSMD13	chr11	+	chr11:250866-252504	chr11:250866-251545;chr11:251627-251819;chr11:251937-252504		chr11:251546-251626;chr11:251820-251936			94.69	87.92	92.24	87.83	86.21	85.19	96.34	96.77	96.83	88.31	94.25	91.49	95.56	98.59	94.05	89.52	91.26	94.23	94.38	98.17	94.41	86.90	88.34	87.10	98.65	97.74	96.26	92.00	93.39	95.18	95.27	91.39	88.64	87.30	86.47	87.93	94.97	97.25	2.28	0.129657	0.643829
K	intron_retention	GAA	chr17	+	chr17:78086511-78086674				chr17:78086510-78086511;chr17:78086674-78086675		1.37	1.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	4.88	0.00	1.30	0.00	6.52	1.15	2.41	0.00	0.72	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.52	0.00	-0.52	0.696244	1.000000
N	alternative_acceptor	CNPY3	chr6	+	chr6:42902337-42903311	chr6:42902337-42903149		chr6:42903150-42903311	chr6:42903311-42903312		9.33	6.64	10.28	3.85	5.11	1.67	7.95	8.33	8.06	5.71	5.88	4.95	8.62	8.89	12.20	6.58	5.77	2.67	5.97	5.26	8.86	6.58	4.48	3.37	6.06	6.25	10.00	6.25	4.81	4.12	5.56	11.86	4.62	5.93	4.86	4.92	6.35	7.29	0.94	0.520630	0.805797
N	jcn_only_AD	ASCC2	chr22	-	chr22:30186538-30188421	chr22:30186538-30188406		chr22:30188407-30188421	chr22:30188421-30188422		0.00	0.00	0.00	5.26	3.37	0.00	0.00	0.00	5.13	0.00	3.12	0.00	3.23	0.00	3.85	5.26	6.49	0.00	2.06	4.17	5.26	2.38	3.16	3.45	8.11	0.00	0.00	0.00	3.70	0.00	0.00	4.11	1.96	0.00	0.00	0.00	2.01	0.00	-2.01	0.222208	0.657607
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28846721-28846866;chr16:28846721-28846875;chr16:28846721-28846933	chr16:28846721-28846869		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		86.67	100.00	82.86	81.82	84.62	NA	88.00	90.91	91.11	87.50	87.80	88.00	80.65	79.31	74.00	85.29	80.77	84.21	NA	78.57	88.24	82.35	80.43	81.25	100.00	86.96	88.37	85.71	92.59	83.33	78.26	70.83	58.33	61.29	68.00	70.73	88.00	82.99	-5.01	0.818262	0.937646
K	intron_retention	NUPR1	chr16	-	chr16:28548991-28549326				chr16:28548990-28548991;chr16:28549326-28549327		0.44	5.26	NA	0.00	0.00	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.31	0.00	0.00	0.00	0.00	0.00	0.40	NA	0.00	0.00	0.36	0.27	0.00	0.00	0.00	0.00	0.47	0.00	0.29	0.29	0.757296	1.000000
N	jcn_only_AD	TTC7A	chr2	+	chr2:47205314-47205930;chr2:47202243-47205930	chr2:47205389-47205930		chr2:47202243-47205313;chr2:47205314-47205388	chr2:47202242-47202243;chr2:47205313-47205314		16.00	0.00	0.00	NA	NA	NA	0.00	24.24	0.00	NA	3.57	NA	3.77	25.00	0.00	NA	1.72	NA	NA	16.00	NA	NA	2.70	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	9.52	0.00	0.00	16.00	16.00	0.039211	0.474054
K	intron_retention	C17orf62	chr17	-	chr17:80407169-80408575				chr17:80407168-80407169;chr17:80408575-80408576		8.45	3.70	12.82	NA	NA	NA	1.85	4.29	0.00	0.00	6.90	0.00	4.62	4.62	5.32	6.67	9.68	NA	NA	4.76	4.76	NA	3.57	23.08	0.00	8.33	7.58	0.00	0.00	8.33	0.00	6.78	NA	9.09	13.04	27.59	2.78	4.69	1.91	0.686121	1.000000
K	intron_retention	TAOK2	chr16	+	chr16:30001127-30002104				chr16:30001126-30001127;chr16:30002104-30002105		5.26	12.00	16.67	NA	NA	NA	0.00	NA	NA	NA	7.69	NA	11.76	NA	NA	NA	0.00	NA	10.00	12.50	10.00	NA	23.81	NA	0.00	8.33	12.50	NA	0.00	NA	9.09	14.29	NA	7.69	8.70	20.00	10.00	8.71	-1.29	0.844938	1.000000
K	intron_retention		chr17	-	chr17:72539127-72540747				chr17:72539126-72539127;chr17:72540747-72540748		4.20	9.52	4.64	14.58	10.53	20.00	2.44	4.69	4.17	5.31	4.11	4.65	3.66	0.00	5.36	9.80	2.78	6.90	9.30	3.88	3.39	7.02	5.45	7.69	16.13	6.25	3.22	4.11	11.48	11.11	6.56	4.55	10.00	3.28	10.00	4.05	9.41	4.45	-4.96	0.294866	1.000000
N	jcn_only_AA	GAK	chr4	-	chr4:860193-860743;chr4:860323-860743;chr4:860365-860743	chr4:860290-860743		chr4:860193-860289;chr4:860290-860322;chr4:860323-860364	chr4:860192-860193;chr4:860289-860290;chr4:860322-860323		32.35	42.59	26.67	43.75	58.82	66.67	29.82	44.29	35.56	56.45	48.61	57.14	33.96	46.38	39.06	45.28	53.09	59.46	21.43	50.82	37.78	47.62	45.21	48.72	23.53	28.05	36.84	44.74	37.25	51.72	38.10	36.56	43.24	47.95	52.63	52.33	31.89	41.20	9.30	0.176073	0.663989
N	cassette	DNAJC8	chr1	-	chr1:28534925-28537081	chr1:28534925-28536482;chr1:28536578-28537081		chr1:28536483-28536577			95.95	100.00	95.79	91.89	95.65	100.00	100.00	100.00	93.59	95.42	99.37	100.00	100.00	100.00	97.18	97.56	100.00	100.00	96.00	96.05	95.12	97.09	98.25	98.15	100.00	94.83	97.37	100.00	98.13	100.00	93.55	93.10	100.00	97.37	98.50	96.27	100.00	96.00	-4.00	0.076233	0.640086
N	alternative_acceptor	GPNMB,MAGI2-AS3	chr7	+	chr7:23313234-23316646;chr7:23313234-23314803;chr7:23313234-23313683;chr7:23313234-23314549;chr7:23313234-23313693	chr7:23313234-23313672		chr7:23313673-23313683;chr7:23313684-23313693;chr7:23313694-23314549;chr7:23314550-23314803;chr7:23314804-23316646	chr7:23313683-23313684;chr7:23313693-23313694;chr7:23314549-23314550;chr7:23314803-23314804;chr7:23316646-23316647		2.85	2.38	4.96	6.24	3.01	3.67	2.86	3.44	2.63	2.36	2.92	2.54	2.86	2.67	3.64	3.10	2.59	2.44	4.10	2.68	2.89	2.59	3.00	2.13	0.46	3.06	4.12	2.47	2.74	2.47	2.84	1.92	3.92	3.01	3.16	3.05	2.86	2.84	-0.02	0.781117	0.917646
N	alternative_donor	EHBP1L1	chr11	+	chr11:65356041-65357221;chr11:65355019-65357221;chr11:65353075-65357221	chr11:65353063-65357221		chr11:65353063-65353074;chr11:65353075-65355018;chr11:65355019-65356040	chr11:65353062-65353063;chr11:65353074-65353075;chr11:65355018-65355019		97.85	98.70	95.43	100.00	100.00	100.00	100.00	98.82	100.00	100.00	100.00	100.00	97.92	99.07	98.56	100.00	100.00	100.00	100.00	97.37	99.24	96.97	99.23	91.67	97.30	97.75	97.57	96.97	98.81	98.55	98.15	97.65	100.00	96.08	96.63	97.10	99.35	98.00	-1.35	0.180899	0.563271
N	cassette	CD33	chr19	+	chr19:51729338-51742772;chr19:51729338-51738411	chr19:51729338-51729564;chr19:51729613-51742772,chr19:51729613-51738411		chr19:51729565-51729612			87.10	93.00	89.66	NA	87.10	NA	92.22	86.67	91.67	96.15	94.83	93.55	93.83	NA	NA	88.00	93.02	90.00	86.05	89.47	86.67	84.62	90.91	93.33	100.00	85.71	88.33	86.67	92.68	92.31	78.57	91.89	93.75	91.67	91.67	96.61	93.38	86.67	-6.70	0.016409	0.372211
N	jcn_only_AA	LRRCC1	chr8	+	chr8:408552-413075	chr8:408552-413006		chr8:413007-413075	chr8:413075-413076		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	92.00	100.00	NA	NA	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AD	DNAJC17	chr15	-	chr15:41067795-41068387;chr15:41067795-41068393	chr15:41067795-41068265		chr15:41068266-41068387;chr15:41068388-41068393	chr15:41068387-41068388;chr15:41068393-41068394		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	3.03	0.00	3.45	0.00	0.00	0.00	0.00	0.535927	0.757311
N	jcn_only_AD	EIF2B4	chr2	-	chr2:27589804-27590036;chr2:27589804-27589951	chr2:27589804-27589940		chr2:27589941-27589951;chr2:27589952-27590036	chr2:27589951-27589952;chr2:27590036-27590037		88.89	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.00	92.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	95.00	90.24	100.00	97.50	95.00	100.00	100.00	0.00	0.919627	0.958585
K	intron_retention	STAC3	chr12	-	chr12:57638406-57638698				chr12:57638405-57638406;chr12:57638698-57638699		8.14	10.10	14.29	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	1.67	0.00	0.00	0.00	5.15	5.56	2.78	0.00	8.70	0.00	8.75	5.41	3.70	2.86	2.56	2.27	6.67	9.30	6.41	0.00	6.98	2.08	5.78	5.48	-0.30	0.945667	1.000000
K	intron_retention	MPV17	chr2	-	chr2:27535640-27535860				chr2:27535639-27535640;chr2:27535860-27535861		3.57	0.00	7.25	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.31	0.00	1.12	0.00	0.00	0.00	0.00	0.00	2.27	0.00	7.46	0.00	NA	3.85	7.58	0.00	3.41	0.00	0.00	0.00	0.00	4.44	2.74	1.43	0.00	0.00	0.00	0.672805	1.000000
N	alternative_acceptor	SERTAD3	chr19	-	chr19:40947994-40950121;chr19:40948509-40950121	chr19:40948396-40950121		chr19:40947994-40948395;chr19:40948396-40948508	chr19:40947993-40947994;chr19:40948395-40948396		4.08	5.00	5.88	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	3.23	7.14	0.00	2.13	3.12	0.00	0.00	0.00	10.34	15.38	10.00	5.56	4.76	0.00	0.00	3.10	3.10	0.678535	0.880186
K	alternative_last_exon	PTS	chr11	+	chr11:112103957-112106571	chr11:112103957-112104154	chr11:112106572-112106757	chr11:112104155-112104696			100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	92.31	100.00	NA	90.00	100.00	NA	95.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	NA	NA	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.557291
N	jcn_only_AA	CNOT10	chr3	+	chr3:32806302-32809497;chr3:32806302-32811378	chr3:32806302-32806541					0.00	0.00	9.52	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	4.55	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	GSDMD	chr8	+	chr8:144644302-144644378				chr8:144644301-144644302;chr8:144644378-144644379		10.64	3.39	12.70	8.00	16.67	12.10	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	1.64	0.00	NA	0.00	12.50	9.68	8.25	NA	9.09	21.43	7.04	6.49	9.84	20.00	13.33	13.95	17.89	16.98	13.04	NA	0.00	12.50	5.21	8.09	2.87	0.962105	1.000000
K	intron_retention	LRSAM1	chr9	+	chr9:130259614-130263288				chr9:130259613-130259614;chr9:130263288-130263289		12.50	0.00	30.00	NA	0.00	10.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	3.85	9.52	6.67	NA	0.00	7.14	14.81	0.00	0.00	NA	9.09	5.26	4.17	5.26	10.00	9.09	6.67	9.09	1.93	2.08	0.16	0.763856	1.000000
N	jcn_only_AA	TRMT5	chr14	-	chr14:61441933-61442192;chr14:61441901-61442192	chr14:61441913-61442192		chr14:61441901-61441912;chr14:61441913-61441932	chr14:61441900-61441901;chr14:61441912-61441913		94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	NDUFV1	chr11	+	chr11:67379041-67379367				chr11:67379040-67379041;chr11:67379367-67379368		5.41	3.86	5.00	3.85	2.74	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.75	2.94	0.99	1.89	2.41	1.72	0.67	0.00	4.11	0.00	1.28	1.18	2.78	8.00	2.58	0.00	4.00	1.09	1.62	1.39	-0.24	0.963504	1.000000
K	intron_retention		chr1	+	chr1:2494336-2494586				chr1:2494335-2494336;chr1:2494586-2494587		35.78	36.33	40.66	30.40	29.23	24.69	5.32	5.08	4.85	5.56	7.32	4.88	8.11	9.38	14.14	2.52	5.43	7.32	31.27	34.09	24.12	28.30	25.25	23.97	38.33	25.00	36.36	14.52	19.03	18.31	32.85	35.80	34.38	27.46	28.93	27.56	32.83	28.93	-3.90	0.918103	1.000000
K	alternative_first_exon	PSMA5	chr1	-	chr1:109964549-109968518,chr1:109964549-109969041;chr1:109964549-109968923	chr1:109964549-109967947	chr1:109968924-109968973	chr1:109967948-109968754			2.02	0.00	3.45	1.92	1.69	3.03	0.00	0.89	0.98	1.61	2.38	2.17	1.52	0.92	1.57	1.23	2.17	2.63	3.03	3.06	1.43	1.11	1.45	1.02	9.09	0.76	1.18	0.83	1.15	0.56	7.45	5.45	9.38	1.85	1.39	1.36	2.27	1.47	-0.80	0.538712	0.672132
K	intron_retention	RNASEK	chr17	+	chr17:6916855-6916984				chr17:6916854-6916855;chr17:6916984-6916985		57.89	54.55	60.00	47.83	47.83	41.18	20.00	40.00	NA	26.92	30.00	18.18	41.67	47.06	NA	41.38	21.05	30.77	53.85	50.00	68.75	58.82	54.55	54.17	NA	66.67	70.59	62.50	51.72	53.85	67.86	58.62	72.22	55.26	48.15	50.00	53.85	53.95	0.09	0.967201	1.000000
N	cassette	SURF1	chr9	-	chr9:136218998-136221513;chr9:136219622-136221513	chr9:136219622-136220603,chr9:136218998-136220603;chr9:136220796-136221513		chr9:136220604-136220795			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	98.57	100.00	98.68	95.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	96.00	100.00	98.51	95.06	100.00	97.83	93.75	99.28	100.00	0.72	0.152300	0.709176
N	jcn_only_AA	TMEM14C	chr6	+	chr6:10723475-10724808;chr6:10723475-10724802	chr6:10723475-10724788		chr6:10724789-10724802;chr6:10724803-10724808	chr6:10724802-10724803;chr6:10724808-10724809		2.13	0.00	2.86	0.00	4.62	NA	4.84	12.12	2.82	1.92	4.14	8.05	3.93	8.16	7.32	6.08	4.14	1.23	10.71	7.14	0.00	3.12	3.20	2.82	0.00	6.25	2.44	5.66	4.65	5.56	10.00	7.69	5.26	8.33	6.25	5.51	4.38	7.65	3.27	0.133067	0.663989
N	alternative_donor	BTBD2,TMEM259	chr19	-	chr19:1014473-1020770	chr19:1014473-1020393		chr19:1020394-1020770	chr19:1020770-1020771		3.49	0.00	2.88	8.33	0.00	NA	0.86	2.30	2.52	3.42	1.50	2.15	1.30	1.92	1.40	2.75	1.09	1.33	NA	1.25	0.00	2.27	1.20	6.56	0.00	1.43	0.81	1.72	1.82	0.00	4.35	1.69	0.00	3.85	3.26	4.55	0.00	2.11	2.11	0.008087	0.211749
K	alternative_acceptor	HLA-F	chr6	+	chr6:29693084-29693228	chr6:29693084-29693223		chr6:29693224-29693228	chr6:29693228-29693229		94.74	91.23	92.90	91.86	92.50	90.20	93.42	95.06	94.90	96.39	93.94	93.30	94.87	94.37	94.84	95.06	92.31	90.91	86.11	91.14	90.16	100.00	100.00	91.44	88.10	94.32	95.35	92.52	89.29	90.91	90.22	90.00	91.55	93.67	95.12	92.42	91.39	94.34	2.95	0.160909	0.660713
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648791-75648946;chr15:75648780-75648946;chr15:75648815-75648946	chr15:75648722-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		35.71	27.27	23.81	16.00	17.24	31.91	21.05	NA	NA	27.27	15.79	18.18	21.05	NA	10.00	NA	15.00	NA	33.33	33.33	16.13	20.00	22.73	20.00	19.61	27.27	15.79	23.53	27.59	23.53	27.78	25.00	28.07	25.00	32.26	31.43	24.16	30.55	6.39	0.085565	0.586065
N	alternative_acceptor	PRPF38A	chr1	+	chr1:52880320-52880433;chr1:52880320-52880403	chr1:52880320-52880412		chr1:52880404-52880412;chr1:52880413-52880433	chr1:52880412-52880413;chr1:52880433-52880434		0.00	NA	4.17	NA	0.00	7.69	0.00	0.00	0.00	0.00	0.00	4.88	3.03	0.00	3.12	4.44	0.00	3.23	0.00	4.00	4.76	6.25	6.67	5.88	NA	4.76	5.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	4.76	3.03	0.00	2.00	2.00	0.265342	0.709013
N	cassette	NDUFS2	chr1	+	chr1:161179722-161180093;chr1:161179722-161180380	chr1:161179722-161179900;chr1:161179979-161180380,chr1:161179979-161180093		chr1:161179901-161179978			96.67	100.00	94.12	100.00	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	97.62	96.15	100.00	100.00	100.00	96.10	100.00	100.00	98.55	97.98	100.00	98.59	100.00	100.00	87.25	100.00	100.00	95.00	100.00	100.00	100.00	0.00	0.859210	0.951512
K	alternative_acceptor	NAP1L1	chr12	-	chr12:76443031-76443535	chr12:76443306-76443535		chr12:76443031-76443305	chr12:76443030-76443031		6.49	1.32	4.55	1.59	1.28	1.30	0.52	1.39	0.86	0.00	0.72	0.00	0.00	1.92	0.00	0.75	0.33	0.00	1.58	0.86	0.65	3.51	2.11	2.58	1.28	3.57	2.81	1.20	1.07	0.61	3.12	3.11	1.27	3.59	2.91	1.79	1.27	2.52	1.25	0.072584	0.585944
K	jcn_only_AA	IDH3B	chr20	-	chr20:2639169-2640170	chr20:2639484-2640170		chr20:2639169-2639483	chr20:2639168-2639169		97.44	96.61	100.00	98.41	98.48	97.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.95	95.24	97.70	97.06	97.20	100.00	100.00	100.00	100.00	97.83	97.83	100.00	96.88	93.10	92.09	96.36	100.00	100.00	98.31	98.72	0.41	0.610805	0.820792
N	alternative_donor	COLGALT1	chr19	+	chr19:17690419-17691507;chr19:17691429-17691507	chr19:17691050-17691507		chr19:17690419-17691049;chr19:17691050-17691428	chr19:17690418-17690419;chr19:17691049-17691050		2.44	2.08	0.70	NA	3.85	NA	0.00	0.00	1.41	0.84	0.39	0.00	0.35	1.37	0.00	0.80	1.20	0.00	0.00	2.86	0.00	2.38	2.21	4.00	5.41	2.86	1.89	2.17	2.11	0.00	0.00	1.96	0.00	1.25	0.83	1.56	0.17	1.91	1.73	0.793329	0.924933
K	intron_retention	LIN37	chr19	+	chr19:36239660-36243076				chr19:36239659-36239660;chr19:36243076-36243077		3.03	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.70	3.12	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	4.26	0.00	0.00	3.33	0.00	0.00	1.51	1.51	0.655993	1.000000
N	jcn_only_AA	TMEM176A	chr7	+	chr7:150501561-150501914;chr7:150501561-150501919	chr7:150501561-150501703		chr7:150501704-150501914;chr7:150501915-150501919	chr7:150501914-150501915;chr7:150501919-150501920		0.93	0.00	0.00	0.00	0.00	0.00	1.39	2.13	3.60	6.56	0.00	3.51	0.00	1.46	2.65	1.85	2.68	0.00	0.00	1.10	1.09	0.00	0.00	0.54	0.00	1.41	0.92	0.00	0.00	0.00	0.74	0.89	0.49	1.39	0.00	0.00	0.00	1.25	1.25	0.009480	0.482846
N	alternative_acceptor	NFKBIA	chr14	-	chr14:35871867-35871976;chr14:35871870-35871976;chr14:35871895-35871976	chr14:35871741-35871976		chr14:35871741-35871866;chr14:35871867-35871869;chr14:35871870-35871894	chr14:35871740-35871741;chr14:35871866-35871867;chr14:35871869-35871870		5.56	7.55	5.65	7.53	6.22	8.82	9.35	6.13	7.01	6.32	5.97	8.08	8.75	7.28	7.45	6.06	8.06	7.45	10.57	7.78	10.64	6.60	6.94	6.43	0.00	5.66	7.18	7.92	7.00	7.55	8.28	8.61	9.18	5.48	5.67	6.30	8.96	6.71	-2.26	0.648274	0.871140
K	jcn_only_AA	VNN2	chr6	-	chr6:133072654-133073599	chr6:133072658-133073599		chr6:133072654-133072657	chr6:133072653-133072654		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	NA	95.83	NA	NA	100.00	100.00	NA	NA	NA	NA	NA	NA	100.00	100.00	91.67	100.00	100.00	94.92	100.00	100.00	0.00	0.676227	0.855556
N	jcn_only_AD	MRPS7	chr17	+	chr17:73259536-73261782	chr17:73259589-73261782		chr17:73259536-73259588	chr17:73259535-73259536		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AA	GBA	chr1	-	chr1:155209754-155210420	chr1:155209869-155210420		chr1:155209754-155209868	chr1:155209753-155209754		95.87	93.02	95.77	NA	92.31	NA	96.55	95.62	96.34	95.88	96.97	98.85	95.20	96.67	97.02	95.45	96.18	93.65	90.00	94.74	96.30	87.50	87.14	93.33	NA	97.54	96.67	90.32	91.84	93.94	95.56	92.25	100.00	97.65	97.20	96.55	95.20	95.75	0.55	0.573884	0.799750
N	jcn_only_AA	SIGLEC1	chr20	-	chr20:3672850-3673508	chr20:3673420-3673508					100.00	100.00	100.00	NA	100.00	80.00	100.00	100.00	98.85	100.00	100.00	98.69	100.00	99.34	99.23	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	95.92	98.02	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	NADK	chr1	-	chr1:1685648-1685722				chr1:1685647-1685648;chr1:1685722-1685723		5.92	12.07	9.86	0.00	5.26	6.67	0.00	0.78	0.00	0.00	0.00	2.17	1.09	2.91	1.76	1.96	0.00	0.00	0.00	7.04	0.00	8.00	8.51	9.76	19.23	5.47	6.98	7.69	6.25	3.33	6.74	7.63	8.33	8.33	4.17	2.52	4.71	5.70	0.99	0.858735	1.000000
N	alternative_donor	C1QC	chr1	+	chr1:22970208-22970503;chr1:22970380-22970503;chr1:22965709-22970503;chr1:22965655-22970503	chr1:22970231-22970503		chr1:22965655-22965708;chr1:22965709-22970207;chr1:22970208-22970230;chr1:22970231-22970379	chr1:22965654-22965655;chr1:22965708-22965709;chr1:22970207-22970208;chr1:22970230-22970231		6.71	6.96	7.66	7.09	8.51	7.39	9.20	9.68	10.95	10.17	8.98	9.47	10.09	11.23	10.21	8.60	9.17	9.38	7.00	9.36	8.51	6.84	8.42	7.46	4.71	8.25	7.84	8.81	8.64	8.00	8.68	5.38	6.80	7.99	7.06	6.93	6.98	9.02	2.04	0.159098	0.563271
K	alternative_donor	C7orf49	chr7	-	chr7:134853813-134855027;chr7:134853813-134855403	chr7:134853813-134855150		chr7:134855028-134855150;chr7:134855151-134855403	chr7:134855150-134855151;chr7:134855403-134855404		57.14	20.00	36.00	NA	50.00	NA	36.11	42.86	48.00	25.00	21.95	NA	33.33	20.00	55.17	25.00	28.57	NA	NA	28.57	NA	NA	13.33	NA	13.33	NA	33.33	NA	21.05	NA	NA	53.85	NA	NA	21.43	54.55	26.66	35.72	9.05	0.293222	0.650093
K	intron_retention		chr14	+	chr14:103596192-103596338				chr14:103596191-103596192;chr14:103596338-103596339		0.69	1.96	1.81	4.55	NA	5.26	0.00	0.00	0.10	0.00	0.00	0.00	0.67	0.00	0.41	0.10	0.00	0.21	17.65	2.28	0.00	1.07	1.29	1.18	5.32	0.71	0.00	0.00	0.00	0.75	1.96	1.43	14.29	1.08	0.79	0.97	3.64	0.70	-2.94	0.269762	1.000000
K	jcn_only_AA	NFKB2	chr10	+	chr10:104161917-104162011	chr10:104161917-104162008		chr10:104162009-104162011	chr10:104162011-104162012		28.68	38.30	35.60	39.15	35.49	37.69	38.33	43.72	41.61	43.67	42.35	45.45	53.85	40.21	44.75	48.43	45.05	45.15	31.34	33.61	33.08	43.44	33.47	38.60	27.27	37.07	37.58	40.88	43.65	42.57	37.24	34.60	27.92	36.05	38.30	39.82	34.82	37.16	2.34	0.901335	0.966004
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7216444-7216530				chr17:7216443-7216444;chr17:7216530-7216531		3.67	2.19	5.05	4.65	3.35	1.28	3.23	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	1.06	0.00	2.93	4.76	4.10	5.88	7.22	6.78	1.91	4.08	3.67	4.26	6.32	2.86	7.44	4.84	4.40	5.00	2.94	6.42	2.56	3.88	1.31	0.845526	1.000000
K	alternative_acceptor	RPL19	chr17	+	chr17:37356603-37357474	chr17:37356603-37357465		chr17:37357466-37357474	chr17:37357474-37357475		100.00	100.00	100.00	100.00	81.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	78.00	100.00	88.54	100.00	79.69	90.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.67	100.00	90.59	75.21	100.00	100.00	100.00	100.00	0.00	0.624153	0.854752
K	intron_retention	UROD	chr1	+	chr1:45478888-45478963				chr1:45478887-45478888;chr1:45478963-45478964		7.50	2.82	12.96	3.85	2.22	0.00	0.00	7.69	5.45	0.00	1.47	0.00	4.23	2.78	5.56	2.27	1.10	0.00	2.50	12.50	3.57	7.69	6.10	5.41	0.00	4.55	8.20	0.00	7.69	0.00	17.86	8.11	0.00	7.27	9.33	7.69	1.25	7.60	6.35	0.064826	1.000000
K	intron_retention		chr1	+	chr1:36766686-36767153				chr1:36766685-36766686;chr1:36767153-36767154		7.14	0.00	4.23	0.00	6.67	NA	0.00	0.00	0.00	1.19	1.82	0.00	0.00	0.00	1.59	0.00	1.20	0.00	0.00	3.12	0.00	4.76	5.13	1.89	0.00	0.00	3.70	3.23	0.00	0.00	4.17	5.17	0.00	4.48	4.41	4.08	0.00	1.56	1.56	0.413054	1.000000
N	alternative_donor	PPP6R2	chr22	+	chr22:50879456-50882294;chr22:50879385-50882294	chr22:50881753-50882294		chr22:50879385-50879455;chr22:50879456-50881752	chr22:50879384-50879385;chr22:50879455-50879456		25.00	11.11	26.53	8.00	7.89	3.85	5.00	10.00	5.26	10.00	7.69	NA	15.00	10.53	13.64	15.38	NA	NA	5.26	21.88	5.56	21.74	18.92	27.78	9.09	25.00	23.68	20.00	16.67	15.00	10.64	20.41	3.08	43.75	30.43	38.71	7.17	16.26	9.08	0.034135	0.349791
N	alternative_donor	MYL6B	chr12	+	chr12:56549377-56551251;chr12:56549386-56551251;chr12:56549814-56551251	chr12:56549278-56551251		chr12:56549278-56549376;chr12:56549377-56549385;chr12:56549386-56549813	chr12:56549277-56549278;chr12:56549376-56549377;chr12:56549385-56549386		10.53	8.51	5.26	0.00	3.23	0.00	0.00	0.00	4.55	8.33	14.29	0.00	4.17	9.09	4.76	0.00	5.88	NA	4.44	6.67	4.05	NA	0.00	NA	0.00	7.14	4.17	NA	0.00	6.67	17.65	9.09	11.36	NA	0.00	12.50	4.30	8.12	3.81	0.238518	0.610360
K	cassette	MVB12A	chr19	+	chr19:17531444-17534306	chr19:17531444-17533140;chr19:17533268-17534306		chr19:17533141-17533267			93.55	100.00	96.43	NA	90.48	NA	95.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.55	NA	100.00	100.00	95.24	100.00	100.00	NA	100.00	93.75	100.00	100.00	0.00	0.446203	0.749388
K	jcn_only_AA	PISD	chr22	-	chr22:32016586-32016981	chr22:32016700-32016981		chr22:32016586-32016699	chr22:32016585-32016586		100.00	89.47	96.55	100.00	100.00	NA	97.37	94.12	96.55	92.11	92.68	NA	98.48	100.00	95.00	98.08	100.00	100.00	NA	100.00	94.12	95.24	96.15	94.12	100.00	96.00	94.12	90.00	96.00	NA	95.00	91.30	90.00	100.00	95.83	93.33	97.37	98.00	0.63	0.361926	0.663989
K	alternative_last_exon	TFPI	chr2	-	chr2:188333778-188348850;chr2:188332660-188348850	chr2:188343531-188348850	chr2:188332480-188332659	chr2:188343305-188343530			7.02	10.81	3.17	22.22	18.18	25.00	0.00	9.09	2.86	5.13	4.17	5.00	5.56	8.33	3.33	11.90	4.55	8.33	7.14	6.06	6.67	16.67	5.26	11.90	16.67	3.45	3.65	15.62	8.82	19.61	7.14	6.14	12.50	5.88	14.29	12.12	8.97	7.08	-1.89	0.471113	0.619765
N	alternative_acceptor	PDXDC1,TAOK2	chr16	+	chr16:30001127-30002104	chr16:30001127-30001863		chr16:30001864-30002104	chr16:30002104-30002105		10.00	15.38	20.00	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	NA	12.50	18.18	NA	20.00	NA	0.00	15.38	16.00	NA	7.69	NA	9.09	17.24	NA	7.69	8.70	14.29	0.00	11.25	11.25	0.129931	0.623599
N	alternative_donor	ZNF32	chr10	-	chr10:75138782-75139886;chr10:75138782-75139678	chr10:75138782-75139636		chr10:75139637-75139678;chr10:75139679-75139886	chr10:75139678-75139679;chr10:75139886-75139887		100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	98.82	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	RNF40	chr16	+	chr16:30777604-30777699				chr16:30777603-30777604;chr16:30777699-30777700		0.00	0.00	2.56	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	NA	6.25	6.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AD		chr6	-	chr6:109767616-109767881;chr6:109767616-109767885	chr6:109767616-109767898		chr6:109767882-109767885;chr6:109767886-109767898	chr6:109767885-109767886;chr6:109767898-109767899		100.00	100.00	93.62	89.47	86.79	NA	100.00	95.38	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.78	96.34	100.00	97.26	90.48	100.00	100.00	100.00	91.43	95.51	95.45	95.59	94.64	92.45	94.83	93.22	90.57	100.00	97.80	-2.20	0.410696	0.673762
K	alternative_acceptor	GLRX	chr5	-	chr5:95150512-95152210;chr5:95150662-95152210	chr5:95150094-95152210		chr5:95150094-95150511;chr5:95150512-95150661	chr5:95150093-95150094;chr5:95150511-95150512		91.45	95.50	91.29	96.55	95.80	100.00	97.95	94.29	94.76	93.59	97.83	92.12	98.11	95.58	93.92	96.99	97.27	94.09	97.20	92.95	96.56	95.24	95.42	94.42	95.24	92.00	93.14	94.37	96.80	96.67	90.37	93.50	96.58	95.00	95.04	94.26	96.89	92.47	-4.42	0.002263	0.316050
N	jcn_only_AA	PRICKLE4,TOMM6	chr6	+	chr6:41757075-41757268;chr6:41757075-41757246	chr6:41757075-41757305		chr6:41757247-41757268;chr6:41757269-41757305	chr6:41757268-41757269;chr6:41757305-41757306		53.42	55.68	56.46	71.15	66.79	70.29	66.41	62.96	61.59	69.43	70.59	71.97	64.31	70.59	57.21	70.17	69.62	79.75	68.68	61.04	64.80	67.90	68.18	70.50	70.90	61.54	56.20	73.65	73.26	74.16	66.28	58.68	68.54	68.16	64.22	69.00	67.47	62.25	-5.22	0.357043	0.663989
K	jcn_only_AA	ACD	chr16	-	chr16:67691718-67691888	chr16:67691757-67691888		chr16:67691718-67691756	chr16:67691717-67691718		100.00	100.00	100.00	100.00	97.37	100.00	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	94.81	100.00	96.97	NA	100.00	NA	100.00	100.00	100.00	NA	92.86	100.00	100.00	100.00	96.23	100.00	100.00	100.00	98.12	100.00	1.88	0.189585	0.663989
K	jcn_only_AD	ATP6AP1	chrX	+	chrX:153660004-153660175;chrX:153657750-153660175	chrX:153657521-153660175		chrX:153657521-153657749;chrX:153657750-153660003	chrX:153657520-153657521;chrX:153657749-153657750		98.94	100.00	98.55	86.67	100.00	NA	99.06	98.78	99.05	97.56	99.16	99.02	98.73	97.60	99.16	98.16	99.05	99.59	94.44	95.51	100.00	95.00	97.63	97.97	100.00	98.55	98.97	98.44	95.90	100.00	100.00	97.38	100.00	97.17	97.26	97.58	99.53	98.66	-0.87	0.671250	0.831179
K	intron_retention	ITGAX	chr16	+	chr16:31390968-31391077				chr16:31390967-31390968;chr16:31391077-31391078		3.39	0.00	5.26	4.00	1.37	0.00	0.49	0.00	0.00	0.55	0.47	0.00	1.97	0.00	0.00	1.40	1.97	0.00	5.88	6.25	4.76	3.16	5.29	0.58	NA	2.68	4.67	1.46	1.40	0.00	1.85	4.26	6.82	2.50	3.51	0.90	1.97	2.27	0.30	0.765485	1.000000
N	jcn_only_AA	GPS1	chr17	+	chr17:80012852-80013037;chr17:80012852-80012967	chr17:80012852-80013040		chr17:80012968-80013037;chr17:80013038-80013040	chr17:80013037-80013038;chr17:80013040-80013041		18.52	26.67	19.51	NA	13.33	NA	16.67	5.26	21.74	11.76	10.17	25.00	18.60	5.26	18.00	12.24	18.03	10.53	13.64	23.81	14.81	14.29	14.63	16.67	9.68	11.76	16.67	11.11	17.78	10.53	20.00	12.90	23.53	12.90	24.39	18.42	17.64	15.14	-2.50	0.350933	0.663989
N	jcn_only_AD	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295972-71297631;chr2:71295467-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71295843-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		94.39	100.00	100.00	100.00	100.00	100.00	96.51	97.08	98.04	97.65	98.03	99.48	96.30	97.23	99.03	98.67	98.15	97.45	97.47	97.11	100.00	97.06	98.35	95.38	94.34	93.80	98.44	98.39	97.19	98.50	96.12	94.34	100.00	92.68	100.00	94.44	96.99	96.60	-0.39	0.211330	0.657607
K	mutually_exclusive	POLR2G	chr11	+	chr11:62529377-62530338,chr11:62530499-62532653	chr11:62529377-62530013,chr11:62530339-62532653	chr11:62530339-62530498	chr11:62530014-62530338			6.67	4.88	9.63	5.56	7.34	6.06	3.61	8.70	5.19	3.39	5.38	2.70	3.96	7.27	5.56	4.82	3.85	2.27	3.66	9.09	3.77	2.78	6.19	3.12	5.45	10.00	5.79	5.26	4.63	4.35	11.11	10.43	6.58	8.62	9.09	8.57	4.42	8.89	4.47	0.000778	0.023331
K	intron_retention	INPPL1	chr11	+	chr11:71944567-71944698				chr11:71944566-71944567;chr11:71944698-71944699		9.72	28.85	15.74	NA	17.65	NA	1.19	1.96	0.00	0.00	1.15	0.00	5.21	2.63	7.69	0.00	3.09	7.14	NA	8.93	11.76	11.76	8.45	10.00	19.57	9.09	15.56	8.33	12.50	NA	3.85	16.92	45.45	8.33	13.70	9.84	19.57	6.39	-13.18	0.578530	1.000000
N	jcn_only_AD	PLGRKT	chr9	-	chr9:5436695-5438212;chr9:5436695-5437922;chr9:5436695-5437631	chr9:5436695-5437788		chr9:5437632-5437788;chr9:5437789-5437922;chr9:5437923-5438212	chr9:5437788-5437789;chr9:5437922-5437923;chr9:5438212-5438213		89.74	90.00	86.75	76.00	100.00	75.00	100.00	90.27	83.43	94.25	95.29	89.81	100.00	87.80	82.35	100.00	100.00	93.85	100.00	87.84	79.07	80.85	100.00	76.00	NA	92.00	88.54	96.15	100.00	96.83	86.14	86.39	100.00	84.62	88.46	84.25	100.00	88.79	-11.21	0.007360	0.215641
N	alternative_acceptor		chr6	+	chr6:151785754-151795569	chr6:151785754-151789477		chr6:151789478-151795569	chr6:151795569-151795570		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.12	NA	100.00	NA	100.00	98.08	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.67	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.193413	0.660713
N	jcn_only_AD	UFD1L	chr22	-	chr22:19462624-19463018;chr22:19462624-19466620	chr22:19462624-19462992		chr22:19462993-19463018;chr22:19463019-19466620	chr22:19463018-19463019;chr22:19466620-19466621		88.89	58.33	75.00	93.33	92.59	NA	93.75	91.18	88.24	95.45	92.42	98.00	93.33	91.49	86.67	95.29	95.00	97.96	91.67	91.89	93.10	84.85	88.89	86.21	NA	86.27	82.93	94.59	92.11	91.30	81.48	73.53	81.82	88.10	87.50	87.93	91.67	90.03	-1.64	0.526306	0.754861
K	jcn_only_AA	STAT3	chr17	-	chr17:40468870-40469199	chr17:40468920-40469199		chr17:40468870-40468919	chr17:40468869-40468870		91.35	89.80	88.89	90.70	89.74	81.39	84.81	92.27	90.76	92.08	95.00	94.79	91.67	89.39	91.35	88.89	93.27	93.23	87.80	92.68	83.21	88.31	90.62	92.86	79.31	87.63	88.17	86.90	83.93	89.84	86.90	87.45	76.19	87.58	86.67	88.00	86.31	90.37	4.06	0.100954	0.663989
K	jcn_only_AD	SNHG5	chr6	-	chr6:86387211-86387512	chr6:86387211-86387508		chr6:86387509-86387512	chr6:86387512-86387513		0.00	0.35	0.97	0.50	0.85	0.47	0.58	0.00	0.71	0.62	0.00	0.00	0.00	6.25	0.00	0.00	0.00	NA	0.64	1.37	1.63	0.00	0.60	0.00	0.33	0.00	0.00	0.82	0.00	1.49	0.50	1.27	0.42	0.94	0.00	0.81	0.39	0.25	-0.14	0.380728	0.657607
K	intron_retention	SLC38A10	chr17	-	chr17:79225413-79225994				chr17:79225412-79225413;chr17:79225994-79225995		15.38	17.24	13.46	16.67	12.00	NA	6.25	5.26	2.00	4.55	4.84	7.41	6.41	3.03	1.92	8.70	3.92	12.50	8.51	10.81	6.98	7.14	11.11	15.38	16.13	11.11	2.33	13.33	3.33	0.00	15.79	4.88	23.08	9.52	12.00	16.22	12.32	10.96	-1.36	0.947617	1.000000
N	alternative_acceptor	OS9	chr12	+	chr12:58109754-58109885;chr12:58109754-58109871	chr12:58109754-58109874		chr12:58109872-58109874;chr12:58109875-58109885	chr12:58109874-58109875;chr12:58109885-58109886		66.26	60.20	68.25	69.23	66.67	70.00	79.75	76.60	76.65	75.81	80.11	76.55	75.82	79.00	80.65	80.19	79.87	78.57	58.06	66.93	67.61	70.77	67.46	67.01	54.05	68.21	67.35	73.97	71.96	69.32	68.63	64.63	63.16	62.96	64.66	64.91	61.68	68.42	6.74	0.261223	0.709013
K	intron_retention	SRSF7	chr2	-	chr2:38976489-38976670				chr2:38976488-38976489;chr2:38976670-38976671		32.43	9.52	33.33	NA	11.90	NA	46.67	24.14	25.00	15.79	42.86	NA	42.00	20.59	20.69	35.00	32.20	NA	0.00	20.00	25.00	33.33	25.23	27.27	NA	23.08	40.00	28.57	29.63	22.22	6.90	14.93	0.00	16.13	20.29	17.95	9.52	21.84	12.32	0.994113	1.000000
K	alternative_donor	GADD45B	chr19	+	chr19:2476627-2477026	chr19:2476629-2477026		chr19:2476627-2476628	chr19:2476626-2476627		96.51	NA	95.31	96.06	93.75	96.88	100.00	98.04	91.79	94.79	86.36	93.42	100.00	100.00	96.67	97.18	100.00	91.52	100.00	96.77	97.50	94.88	92.31	96.25	NA	100.00	93.62	95.08	90.91	95.21	94.55	94.44	100.00	95.14	100.00	94.32	100.00	97.41	-2.59	0.042959	0.375646
N	alternative_acceptor	SLC39A13	chr11	+	chr11:47436711-47437875;chr11:47436711-47436838	chr11:47436711-47436948		chr11:47436839-47436948;chr11:47436949-47437875	chr11:47436948-47436949;chr11:47437875-47437876		0.81	0.66	0.79	0.88	2.27	1.20	1.75	1.49	2.08	1.79	1.27	5.88	1.52	1.08	1.82	1.15	1.18	11.11	0.76	0.94	0.63	1.16	0.75	2.22	1.25	1.23	1.30	1.32	1.06	2.22	2.04	0.77	0.79	1.87	0.70	1.11	1.02	1.16	0.14	0.593117	0.844088
N	alternative_acceptor	ACP2	chr11	-	chr11:47261718-47264273;chr11:47261435-47264273;chr11:47261750-47264273;chr11:47263622-47264273	chr11:47261801-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		91.24	92.56	91.71	96.43	83.87	81.97	92.86	95.05	92.90	89.68	90.50	95.45	89.81	92.24	92.34	91.30	88.16	91.04	93.02	92.97	91.27	93.44	88.81	92.31	80.90	93.95	93.84	94.03	90.76	92.71	95.41	90.48	84.71	92.05	87.93	92.97	91.19	93.46	2.28	0.083611	0.585944
K	alternative_last_exon	NRP1	chr10	-	chr10:33491915-33496499;chr10:33491924-33496499;chr10:33486638-33496499	chr10:33495282-33496499	chr10:33489946-33491923;chr10:33486549-33486637	chr10:33494377-33495281			7.14	5.41	0.00	16.67	16.67	7.69	2.13	8.33	NA	4.55	6.52	8.33	3.39	9.09	NA	4.00	4.92	12.00	8.11	16.67	8.33	10.00	15.38	9.09	10.00	NA	0.00	23.53	23.81	35.71	NA	NA	3.70	7.69	14.29	18.18	4.55	8.71	4.16	0.109063	0.333781
K	alternative_acceptor	CTB-50L17.10	chr19	+	chr19:4501330-4501925	chr19:4501330-4501922		chr19:4501923-4501925	chr19:4501925-4501926		62.50	51.61	61.11	57.14	59.38	51.11	53.85	68.75	72.73	60.00	63.64	NA	58.33	66.67	59.09	58.33	50.00	NA	55.17	44.44	59.57	NA	61.54	NA	60.40	53.85	61.90	53.85	54.29	70.00	52.38	53.23	56.25	47.06	50.00	65.00	55.71	58.17	2.46	0.612462	0.853341
K	intron_retention	IKBKB	chr8	+	chr8:42186733-42188431				chr8:42186732-42186733;chr8:42188431-42188432		7.14	13.51	2.33	27.27	8.70	54.55	2.86	6.25	4.17	0.00	0.00	NA	4.44	0.00	0.00	0.00	0.00	NA	31.58	4.00	13.33	0.00	6.45	0.00	29.63	6.67	5.71	0.00	8.00	0.00	10.00	9.38	17.39	7.69	6.06	7.14	15.45	6.46	-8.99	0.274432	1.000000
K	jcn_only_AA	PCK2	chr14	+	chr14:24572465-24573050	chr14:24572465-24572718		chr14:24572719-24573050	chr14:24573050-24573051		85.54	86.30	82.61	81.82	74.29	70.00	85.53	91.23	88.30	87.50	91.38	92.31	94.35	90.84	89.09	90.32	89.83	93.33	72.73	82.57	83.81	NA	84.38	NA	63.64	85.11	92.50	NA	78.85	86.67	82.50	84.31	75.00	85.19	88.57	82.76	80.27	85.33	5.06	0.211717	0.663989
N	jcn_only_AA	AP3B1	chr5	-	chr5:77298902-77311233;chr5:77299319-77311233	chr5:77298880-77311233		chr5:77298880-77298901;chr5:77298902-77299318	chr5:77298879-77298880;chr5:77298901-77298902		98.04	92.00	98.44	100.00	93.02	NA	100.00	95.65	95.74	91.94	100.00	90.48	98.46	90.32	93.62	91.67	100.00	100.00	100.00	100.00	97.14	95.65	95.65	93.44	NA	100.00	93.75	95.35	96.23	97.73	96.15	92.86	100.00	91.36	95.00	90.59	100.00	97.09	-2.91	0.530933	0.770130
N	cassette	THEMIS2	chr1	+	chr1:28203240-28211805;chr1:28203245-28211805;chr1:28199177-28211805;chr1:28203240-28208481	chr1:28203240-28206154,chr1:28199177-28206154,chr1:28203245-28206154;chr1:28206566-28211805,chr1:28206566-28208481		chr1:28206155-28206565			59.65	33.71	55.69	NA	58.21	NA	85.54	89.95	78.47	87.50	86.90	91.16	88.89	94.23	90.26	90.40	95.00	95.56	38.10	59.88	37.36	73.68	64.62	91.23	61.54	67.01	45.85	86.36	74.76	86.08	59.15	54.65	17.14	77.14	70.11	86.23	49.82	63.45	13.63	0.237174	0.709176
K	intron_retention	C21orf33,CH507-9B2.3,CH507-9B2.4	chr21	+	chr21:45563244-45564702				chr21:45563243-45563244;chr21:45564702-45564703		17.39	1.82	8.57	5.88	3.51	NA	0.00	0.00	0.00	2.86	1.00	0.00	0.83	0.00	2.04	0.00	0.00	0.00	3.08	15.38	4.17	23.81	2.82	NA	0.00	0.00	7.84	8.00	4.41	0.00	23.08	8.16	6.85	12.20	6.25	17.24	1.32	7.69	6.37	0.545812	1.000000
N	alternative_acceptor	MYO15B,NMT1	chr17	+	chr17:43181245-43182226	chr17:43181245-43181488		chr17:43181489-43182226	chr17:43182226-43182227		8.33	7.81	7.69	8.00	5.13	5.88	1.15	1.27	1.43	2.38	1.32	3.23	1.12	1.22	1.82	1.59	1.37	0.00	5.56	6.15	3.95	10.34	10.53	13.64	4.35	4.44	4.69	6.25	6.38	7.41	7.32	7.25	3.08	11.54	9.43	13.89	3.71	5.29	1.58	0.577075	0.839239
K	alternative_acceptor	FGD3	chr9	+	chr9:95795156-95796825	chr9:95795156-95796822		chr9:95796823-95796825	chr9:95796825-95796826		70.00	70.93	68.29	NA	62.07	NA	80.95	89.47	54.55	NA	76.92	NA	69.57	71.43	66.67	NA	82.35	NA	74.51	70.00	88.89	NA	68.97	NA	83.02	75.61	72.50	NA	80.00	NA	75.56	71.11	70.00	63.64	66.67	NA	72.72	73.50	0.78	0.896176	0.963205
K	jcn_only_AD	ANP32A	chr15	-	chr15:69080259-69109888;chr15:69080259-69109723;chr15:69080259-69081581	chr15:69080259-69113036		chr15:69081582-69109723;chr15:69109724-69109888;chr15:69109889-69113036	chr15:69109723-69109724;chr15:69109888-69109889;chr15:69113036-69113037		100.00	96.40	96.08	NA	89.47	NA	97.32	93.18	96.91	100.00	92.75	100.00	98.45	94.44	98.80	97.30	97.62	100.00	89.23	100.00	96.08	90.62	92.68	92.59	100.00	100.00	100.00	100.00	97.62	100.00	94.44	95.60	94.29	97.50	92.47	95.12	96.86	97.22	0.36	0.617762	0.811678
K	cassette	RPS6KA1	chr1	+	chr1:26885429-26887535	chr1:26885429-26887216;chr1:26887343-26887535		chr1:26887217-26887342			98.98	100.00	98.03	NA	100.00	NA	100.00	100.00	100.00	100.00	99.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	90.48	98.59	95.24	100.00	100.00	100.00	100.00	100.00	100.00	95.74	100.00	100.00	100.00	97.44	98.63	100.00	99.49	-0.51	0.126942	0.709176
K	cassette	C20orf24	chr20	+	chr20:35236222-35238003;chr20:35236222-35240412	chr20:35236222-35236292;chr20:35236404-35238003,chr20:35236404-35240412		chr20:35236293-35236403			8.25	8.38	12.42	14.49	8.81	10.00	4.30	5.89	6.08	3.97	5.68	6.00	3.75	5.45	7.77	4.83	3.73	4.05	11.21	7.57	7.23	10.00	5.91	12.66	15.62	7.95	7.57	9.15	4.57	10.07	10.53	11.01	4.76	10.47	7.81	14.29	6.57	7.76	1.19	0.853282	0.950337
K	intron_retention	ZBTB48	chr1	+	chr1:6648503-6648815				chr1:6648502-6648503;chr1:6648815-6648816		3.23	3.16	3.39	4.17	3.37	3.70	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	2.00	0.00	2.78	10.00	2.27	NA	3.95	6.67	7.14	0.00	3.12	NA	0.00	3.64	6.52	4.76	2.78	10.00	2.58	1.61	-0.97	0.995253	1.000000
K	intron_retention	CPSF3L	chr1	-	chr1:1249746-1250203				chr1:1249745-1249746;chr1:1250203-1250204		11.54	7.69	17.24	NA	13.33	NA	4.17	9.09	6.25	0.00	12.00	0.00	4.17	9.09	5.26	7.41	9.09	0.00	8.33	9.52	9.52	14.29	23.08	NA	NA	9.09	8.33	6.67	16.67	0.00	10.53	20.59	0.00	13.64	20.00	12.50	4.17	9.30	5.13	0.890694	1.000000
K	coord_cassette	SLCO2B1	chr11	+	chr11:74876995-74883423	chr11:74876995-74880217;chr11:74880452-74880710;chr11:74880810-74883423		chr11:74880218-74880451;chr11:74880711-74880809			100.00	100.00	100.00	NA	NA	NA	99.46	100.00	95.83	98.81	99.18	100.00	98.86	100.00	100.00	98.88	98.85	100.00	NA	98.33	NA	94.44	97.06	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	99.73	100.00	0.27	0.847373	0.949148
N	cassette	ARHGEF11	chr1	-	chr1:156907289-156909339	chr1:156907289-156908209;chr1:156908306-156909339		chr1:156908210-156908305			90.00	90.91	91.14	NA	100.00	NA	100.00	98.92	97.52	94.44	95.65	94.93	95.92	97.83	92.55	94.23	92.00	92.97	NA	93.75	100.00	100.00	94.44	96.61	100.00	96.69	93.85	100.00	91.67	95.65	94.74	90.48	NA	95.12	95.83	92.06	97.96	95.72	-2.25	0.606438	0.853757
N	alternative_acceptor	MYO1F	chr19	-	chr19:8601281-8601382	chr19:8601295-8601382		chr19:8601281-8601294	chr19:8601280-8601281		0.00	0.00	0.54	0.00	0.00	NA	0.59	0.77	0.00	0.00	0.00	0.00	0.00	0.75	0.00	0.00	0.53	0.00	0.00	1.27	0.00	0.00	0.00	0.00	7.35	0.00	1.01	2.78	0.68	0.00	1.04	0.34	0.00	1.67	0.00	0.00	0.00	0.76	0.76	0.599744	0.847140
N	coord_cassette	TPRA1	chr3	-	chr3:127294109-127295459	chr3:127294109-127294591;chr3:127294653-127294782;chr3:127294894-127295459		chr3:127294592-127294652;chr3:127294783-127294893			100.00	100.00	100.00	95.45	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	95.59	91.43	100.00	100.00	100.00	0.00	0.363217	0.643829
K	cassette	TMEM173	chr5	-	chr5:138856040-138857854	chr5:138856040-138856913;chr5:138857101-138857854		chr5:138856914-138857100			52.50	62.86	62.12	NA	69.23	50.00	93.06	94.87	89.89	89.47	89.66	100.00	98.33	92.00	90.54	86.67	89.66	NA	76.92	86.36	80.00	NA	84.21	NA	58.62	91.67	84.48	83.33	93.55	86.67	NA	80.00	64.29	NA	90.00	83.33	70.61	91.67	21.06	0.474455	0.770157
N	alternative_donor	COL23A1	chr5	-	chr5:177666181-177669042	chr5:177666181-177667461		chr5:177667462-177669042	chr5:177669042-177669043		6.25	0.00	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	3.03	0.00	NA	0.00	1.52	0.00	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.914936	0.981916
K	cassette	EIF4A2	chr3	+	chr3:186505672-186506913	chr3:186505672-186506098;chr3:186506206-186506913		chr3:186506099-186506205			9.30	5.41	8.91	29.73	22.95	NA	4.88	9.52	8.45	22.94	20.20	16.44	12.60	18.67	10.50	35.87	25.00	18.37	10.26	13.99	8.05	39.53	25.90	35.56	6.90	14.37	9.29	38.00	32.10	32.61	14.63	12.57	11.11	40.67	28.47	34.36	8.58	14.18	5.60	0.031478	0.448471
K	intron_retention		chr19	+	chr19:6828720-6828825				chr19:6828719-6828720;chr19:6828825-6828826		0.55	2.94	1.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	2.83	1.87	14.71	0.00	0.61	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.58	0.62	1.47	0.00	-1.47	0.476606	1.000000
K	intron_retention	GSDMD	chr8	+	chr8:144644521-144644617				chr8:144644520-144644521;chr8:144644617-144644618		1.12	1.20	0.87	2.38	5.08	2.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	2.82	0.98	2.15	0.00	0.00	2.78	0.67	0.72	1.89	0.00	0.00	3.57	3.79	4.02	3.66	6.25	0.00	4.50	0.94	0.85	-0.09	0.912654	1.000000
K	jcn_only_AD	THOC5	chr22	-	chr22:29924167-29924414	chr22:29924167-29924262		chr22:29924263-29924414	chr22:29924414-29924415		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.69	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	cassette	AP2S1	chr19	-	chr19:47342057-47349249	chr19:47342057-47342721;chr19:47342878-47349249		chr19:47342722-47342877			94.35	93.89	93.75	97.25	92.15	94.15	94.57	97.03	96.67	93.57	96.00	94.55	98.08	98.31	96.15	96.85	97.87	100.00	96.20	97.75	93.19	94.37	95.45	95.52	96.68	98.17	97.81	95.45	96.48	96.88	92.78	96.91	96.21	97.14	97.61	98.20	96.20	97.39	1.19	0.691370	0.886422
K	intron_retention	PRRC2A	chr6	+	chr6:31601767-31602012				chr6:31601766-31601767;chr6:31602012-31602013		5.36	0.00	2.53	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	NA	0.00	0.00	4.35	6.12	5.13	0.00	4.26	3.90	4.35	0.00	0.00	15.00	5.26	NA	1.75	4.41	7.59	0.00	2.13	2.13	0.430671	1.000000
K	cassette	CTBP1	chr4	-	chr4:1209994-1221986	chr4:1209994-1219147;chr4:1219355-1221986		chr4:1219148-1219354			100.00	100.00	96.92	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	98.18	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	96.30	100.00	98.21	100.00	92.59	100.00	100.00	100.00	100.00	97.14	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	PLEKHM1	chr17	-	chr17:43516944-43517528	chr17:43517001-43517528		chr17:43516944-43517000	chr17:43516943-43516944		90.32	100.00	92.31	NA	90.91	NA	100.00	100.00	100.00	96.30	94.29	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.00	95.00	100.00	100.00	100.00	94.44	100.00	NA	100.00	100.00	NA	100.00	95.12	90.62	100.00	100.00	0.00	0.363217	0.709013
K	cassette	FAM32A	chr19	+	chr19:16296577-16301697	chr19:16296577-16301330;chr19:16301385-16301697		chr19:16301331-16301384			93.18	96.61	97.80	100.00	92.98	97.62	97.50	100.00	97.85	97.33	97.53	98.37	97.58	99.03	100.00	97.66	97.75	100.00	100.00	97.70	98.46	96.15	95.28	97.18	90.62	98.70	97.37	96.61	100.00	98.80	100.00	100.00	100.00	97.70	98.02	98.28	97.54	98.87	1.33	0.563698	0.824881
N	jcn_only_AA	SMARCAL1	chr2	+	chr2:217332770-217339991	chr2:217332770-217335902		chr2:217335903-217339991	chr2:217339991-217339992		0.00	0.00	0.00	NA	0.00	NA	6.67	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.363217	0.663989
N	cassette	CAPG	chr2	-	chr2:85625276-85626258	chr2:85625276-85625842;chr2:85625906-85626258		chr2:85625843-85625905			96.64	93.03	91.85	89.34	94.79	88.82	98.78	99.61	100.00	98.42	98.64	98.72	98.82	98.80	100.00	97.92	97.91	98.17	96.33	96.47	97.12	95.39	95.37	94.13	96.50	96.70	96.30	95.92	97.24	96.35	94.83	95.62	94.49	96.28	96.82	94.74	96.41	96.67	0.26	0.488078	0.774715
N	jcn_only_AD		chr16	-	chr16:70516079-70516682	chr16:70516079-70516631		chr16:70516632-70516682	chr16:70516682-70516683		92.31	100.00	100.00	100.00	100.00	NA	93.55	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.772354	0.886755
K	intron_retention		chr1	+	chr1:22970231-22970503				chr1:22970230-22970231;chr1:22970503-22970504		18.42	10.45	6.45	2.70	3.31	3.85	6.09	12.00	3.60	2.94	5.60	2.80	7.88	10.15	4.86	8.11	10.00	4.76	6.00	8.57	7.14	4.17	5.10	4.90	42.50	11.76	11.86	6.73	6.92	5.76	2.11	13.33	6.25	2.38	6.52	2.08	7.06	10.96	3.89	0.864764	1.000000
N	alternative_acceptor	SERTAD3	chr19	-	chr19:40948396-40950121;chr19:40948509-40950121	chr19:40947994-40950121		chr19:40947994-40948395;chr19:40948396-40948508	chr19:40947993-40947994;chr19:40948395-40948396		91.84	95.00	88.24	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	83.33	100.00	100.00	96.77	92.86	100.00	93.62	93.75	100.00	100.00	100.00	75.86	69.23	90.00	83.33	90.48	100.00	100.00	92.73	-7.27	0.196944	0.662330
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145013517;chr8:145012861-145016559;chr8:145012861-145047570;chr8:145012861-145027893;chr8:145012861-145024351	chr8:145012861-145017946	chr8:145049345-145049543;chr8:145013518-145013758;chr8:145016560-145016692;chr8:145047571-145047697;chr8:145027894-145028088;chr8:145024352-145025044	chr8:145017947-145018126			7.14	3.70	3.85	NA	NA	NA	3.45	3.23	5.88	2.17	5.77	0.00	4.90	2.33	5.56	1.56	3.53	8.00	0.00	8.33	NA	NA	3.45	7.69	4.08	7.69	0.00	NA	5.56	NA	NA	NA	7.14	0.00	2.86	0.00	3.89	7.14	3.25	0.265007	0.480956
N	alternative_acceptor	CHD3	chr17	+	chr17:7812657-7813745;chr17:7812657-7813756	chr17:7812657-7813403		chr17:7813404-7813745;chr17:7813746-7813756	chr17:7813745-7813746;chr17:7813756-7813757		55.10	42.86	58.87	47.37	47.17	NA	22.22	25.00	28.57	10.00	8.33	NA	26.67	NA	32.00	NA	20.00	NA	45.16	66.67	51.06	52.94	51.11	46.67	42.86	55.56	50.94	NA	52.17	NA	64.29	57.65	44.12	48.00	51.35	56.00	42.86	55.56	12.70	0.106325	0.598353
K	intron_retention		chr19	-	chr19:1578158-1578333				chr19:1578157-1578158;chr19:1578333-1578334		10.00	15.00	13.04	14.81	13.64	0.00	5.56	7.50	6.06	9.30	5.77	0.00	5.00	4.08	2.82	6.85	1.92	NA	8.16	8.82	11.48	12.24	11.00	8.33	10.91	8.70	8.06	13.33	7.14	8.70	12.82	11.48	11.90	14.71	10.34	8.47	9.54	8.76	-0.78	0.878002	1.000000
K	intron_retention		chr19	+	chr19:47884250-47884442				chr19:47884249-47884250;chr19:47884442-47884443		11.36	12.73	17.02	4.76	4.41	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	1.82	7.89	3.28	11.76	9.84	15.79	5.88	11.11	9.76	4.17	2.00	0.00	5.56	11.86	3.70	11.43	2.56	10.00	3.70	7.89	4.19	0.701878	1.000000
K	cassette	TRAPPC12	chr2	+	chr2:3469467-3482616	chr2:3469467-3481465;chr2:3481567-3482616		chr2:3481466-3481566			76.47	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.77	92.86	85.19	NA	100.00	NA	100.00	100.00	96.67	100.00	100.00	NA	100.00	100.00	100.00	92.31	100.00	NA	100.00	100.00	0.00	0.288561	0.709176
K	intron_retention	RNASEH2C	chr11	-	chr11:65487889-65488057				chr11:65487888-65487889;chr11:65488057-65488058		30.43	22.73	17.39	27.78	24.14	23.81	19.57	7.14	12.50	20.00	20.83	27.27	14.04	16.67	15.00	22.22	18.37	12.50	15.91	26.32	11.67	NA	18.52	NA	35.48	16.67	21.43	12.50	20.00	20.00	36.84	36.00	25.00	30.00	25.00	22.22	21.15	21.50	0.35	0.996721	1.000000
N	alternative_acceptor	NISCH	chr3	+	chr3:52525530-52525646;chr3:52525530-52525887	chr3:52525530-52525892		chr3:52525647-52525887;chr3:52525888-52525892	chr3:52525887-52525888;chr3:52525892-52525893		0.00	4.27	5.06	NA	5.08	NA	0.00	NA	10.00	NA	0.00	NA	2.50	0.00	NA	0.00	0.00	NA	0.00	5.13	0.00	0.00	4.26	NA	0.00	0.00	0.00	NA	7.23	NA	0.00	0.00	5.13	0.00	6.90	0.00	1.25	0.00	-1.25	0.511827	0.800006
N	jcn_only_AA	LILRB4	chr19	+	chr19:55177888-55178161;chr19:55177888-55178147;chr19:55177888-55177991	chr19:55177888-55178144		chr19:55177992-55178144;chr19:55178145-55178147;chr19:55178148-55178161	chr19:55178144-55178145;chr19:55178147-55178148;chr19:55178161-55178162		15.11	9.69	12.12	17.63	17.26	16.88	18.59	19.57	18.43	20.96	19.05	18.79	25.83	26.92	28.42	28.19	25.59	27.84	14.77	16.00	15.46	15.50	15.58	17.34	9.09	16.66	14.39	16.09	17.00	17.26	12.95	13.06	12.92	17.74	17.52	16.42	13.84	16.33	2.48	0.424849	0.694751
K	alternative_first_exon	FIS1	chr7	-	chr7:100887421-100895408;chr7:100887421-100895175	chr7:100887421-100888240	chr7:100895176-100895597	chr7:100888241-100888366			94.44	100.00	88.24	95.83	98.94	97.67	100.00	83.33	89.29	100.00	99.13	98.25	100.00	83.33	92.31	98.85	99.01	100.00	98.53	78.95	100.00	94.74	98.04	100.00	100.00	66.67	81.82	97.37	100.00	96.97	88.24	76.92	97.54	100.00	95.45	92.06	100.00	83.33	-16.67	0.006799	0.040950
N	coord_cassette	TMEM14C	chr6	+	chr6:10723475-10728872	chr6:10723475-10724788;chr6:10724867-10725193;chr6:10725271-10726139;chr6:10726242-10728872		chr6:10724789-10724866;chr6:10725194-10725270;chr6:10726140-10726241			96.67	100.00	92.86	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	98.15	97.74	100.00	100.00	95.65	98.53	100.00	100.00	100.00	91.18	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.22	97.22	95.83	95.65	100.00	96.88	100.00	100.00	100.00	100.00	0.00	0.410434	0.661940
K	alternative_last_exon	CARD6	chr5	+	chr5:40843812-40860099	chr5:40843812-40852275	chr5:40860100-40860277	chr5:40852276-40855456			97.56	100.00	100.00	NA	100.00	NA	98.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	94.44	NA	100.00	100.00	88.24	97.73	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	99.09	100.00	0.91	0.261724	0.474933
N	cassette	CD40	chr20	+	chr20:44751396-44755278;chr20:44751396-44756776	chr20:44751396-44751764;chr20:44751859-44755278,chr20:44751859-44756776		chr20:44751765-44751858			89.33	100.00	82.52	97.75	100.00	98.47	100.00	98.30	93.43	98.58	100.00	98.89	100.00	98.89	92.32	99.13	94.87	98.40	85.71	91.63	88.28	96.45	91.18	95.99	NA	93.35	86.61	96.63	100.00	98.58	90.06	82.10	100.00	94.59	100.00	94.48	100.00	92.49	-7.51	0.322007	0.709176
K	jcn_only_AD	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6917597-6918380	chr17:6918198-6918380		chr17:6917597-6918197	chr17:6917596-6917597		86.67	100.00	92.05	76.09	100.00	78.43	100.00	100.00	100.00	80.36	100.00	86.00	100.00	100.00	91.23	100.00	100.00	91.11	64.08	70.18	70.44	100.00	89.15	85.71	93.10	82.54	89.68	83.08	80.49	79.73	60.91	74.05	58.47	80.85	90.74	87.78	96.55	84.61	-11.94	0.807200	0.908954
K	jcn_only_AD	ASCC2	chr22	-	chr22:30189666-30196979	chr22:30189666-30195183		chr22:30195184-30196979	chr22:30196979-30196980		2.70	0.00	3.51	0.00	7.14	0.00	6.52	8.70	0.00	0.00	2.86	0.00	4.84	0.00	0.00	0.00	4.76	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.02	0.00	0.00	5.80	2.13	3.70	4.76	0.00	1.06	0.00	-1.06	0.853723	0.929892
K	cassette	RALY	chr20	+	chr20:32619411-32659871	chr20:32619411-32652849;chr20:32652967-32659871		chr20:32652850-32652966			0.82	0.00	0.75	6.06	2.00	0.00	1.87	1.99	2.00	1.76	2.75	1.60	2.01	2.45	2.75	2.89	1.94	2.15	3.23	0.77	1.79	2.04	1.61	2.54	0.00	2.17	0.81	1.02	2.26	2.25	2.41	0.00	0.00	1.52	0.69	3.09	0.94	2.08	1.15	0.393547	0.710242
N	jcn_only_AD	VPS8	chr3	+	chr3:184717650-184742123	chr3:184718283-184742123		chr3:184717650-184718282	chr3:184717649-184717650		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	8.00	6.90	0.00	2.94	0.00	NA	0.00	2.86	NA	0.00	NA	0.00	5.95	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.373901	0.657607
N	jcn_only_AA	TATDN3	chr1	+	chr1:212981191-212985592;chr1:212981191-212985635;chr1:212981191-212985589	chr1:212981191-212985568		chr1:212985569-212985589;chr1:212985590-212985592;chr1:212985593-212985635	chr1:212985589-212985590;chr1:212985592-212985593;chr1:212985635-212985636		40.00	0.00	29.41	NA	NA	NA	6.25	20.83	16.67	NA	14.29	NA	5.26	18.92	13.64	NA	10.00	NA	26.67	23.33	30.43	NA	NA	NA	0.00	19.35	30.00	NA	NA	NA	18.18	26.92	15.38	NA	20.00	NA	5.75	20.09	14.34	0.024166	0.618872
K	intron_retention		chr15	+	chr15:41105616-41105910				chr15:41105615-41105616;chr15:41105910-41105911		0.00	4.44	0.00	0.00	3.88	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	2.56	0.00	1.89	0.00	8.89	NA	3.30	0.00	4.00	NA	2.44	NA	5.00	3.03	6.15	0.00	5.88	0.00	2.93	0.00	-2.93	0.671691	1.000000
K	alternative_donor	ROMO1	chr20	+	chr20:34287417-34287554;chr20:34287374-34287554	chr20:34287379-34287554		chr20:34287374-34287378;chr20:34287379-34287416	chr20:34287373-34287374;chr20:34287378-34287379		43.24	52.58	48.28	46.67	50.00	56.56	54.24	51.22	52.94	56.25	52.63	45.28	56.41	54.84	45.24	52.50	58.57	60.00	50.30	48.65	51.85	45.45	45.07	62.07	47.27	50.00	51.85	51.72	52.08	56.86	42.59	44.68	52.70	54.17	60.00	56.41	52.64	49.33	-3.31	0.135736	0.549706
N	cassette	SAT1	chrX	+	chrX:23802001-23803444;chrX:23802001-23803451	chrX:23802001-23802410;chrX:23802521-23803451,chrX:23802521-23803444		chrX:23802411-23802520			2.77	1.07	2.75	1.77	1.66	2.01	2.92	4.90	12.07	3.04	3.83	2.87	3.66	6.78	10.94	4.37	4.76	2.98	0.93	3.51	2.24	2.42	2.17	3.14	1.20	5.20	5.53	8.91	4.17	5.68	2.24	2.27	0.96	4.05	3.71	3.49	1.14	4.21	3.07	0.018262	0.373030
N	alternative_donor	PARVG	chr22	+	chr22:44581753-44583655;chr22:44582522-44583655	chr22:44582597-44583655		chr22:44581753-44582521;chr22:44582522-44582596	chr22:44581752-44581753;chr22:44582521-44582522		9.68	2.38	10.53	NA	1.52	NA	3.55	4.55	4.35	0.00	1.37	0.00	3.76	0.00	10.00	2.08	2.14	0.00	5.13	7.14	0.00	0.00	8.51	5.00	8.33	10.53	17.65	4.17	5.49	0.00	NA	8.11	2.22	6.67	7.45	3.85	3.65	7.14	3.48	0.350332	0.650093
K	intron_retention		chr17	+	chr17:46051815-46052524				chr17:46051814-46051815;chr17:46052524-46052525		58.33	62.67	72.58	44.44	53.33	36.36	12.12	18.75	3.45	0.00	4.44	0.00	14.29	13.33	20.00	2.86	10.81	0.00	40.91	60.00	50.00	40.00	50.77	45.24	81.48	60.61	57.97	40.00	44.62	24.32	65.00	70.00	46.15	45.00	67.35	48.33	43.53	59.16	15.63	0.928917	1.000000
N	alternative_donor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24681036-24681971;chr14:24681036-24682229;chr14:24681036-24682614;chr14:24681036-24683199	chr14:24681036-24681756		chr14:24681757-24681971;chr14:24681972-24682229;chr14:24682230-24682614;chr14:24682615-24683199	chr14:24681971-24681972;chr14:24682229-24682230;chr14:24682614-24682615;chr14:24683199-24683200		9.09	5.00	15.79	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	NA	0.00	0.00	7.14	9.09	5.88	NA	8.70	NA	NA	7.69	5.88	9.09	4.55	8.33	10.00	5.56	9.09	NA	8.33	8.33	5.00	8.39	3.39	0.531612	0.776719
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075828-100076416	chr7:100075931-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		78.08	71.15	64.06	NA	55.88	20.00	62.12	47.37	40.51	45.00	49.12	51.43	70.77	51.46	53.75	61.54	65.45	71.43	53.57	64.06	65.79	58.33	53.33	72.73	61.90	73.91	74.55	55.00	60.53	89.47	69.81	66.07	53.33	80.77	82.05	74.36	62.01	66.94	4.93	0.748995	0.906320
N	jcn_only_AA		chr22	+	chr22:50636018-50636255	chr22:50636018-50636251		chr22:50636252-50636255	chr22:50636255-50636256		95.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.24	100.00	100.00	92.31	100.00	100.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.972953	0.990277
N	jcn_only_AA	CTSL	chr9	+	chr9:90341169-90342948;chr9:90341169-90342275;chr9:90341169-90342589;chr9:90341169-90342941	chr9:90341169-90342508					98.27	100.00	99.61	100.00	96.35	82.61	98.23	97.89	97.40	95.29	99.29	98.69	96.97	98.06	97.75	99.08	96.76	99.08	100.00	95.86	99.64	99.45	100.00	95.60	100.00	98.17	98.15	95.45	94.40	92.67	99.42	99.52	100.00	96.05	96.43	95.41	100.00	98.12	-1.88	0.108455	0.663989
K	jcn_only_AA	MCTP1	chr5	-	chr5:94040909-94044216	chr5:94043273-94044216		chr5:94040909-94043272	chr5:94040908-94040909		92.31	NA	96.67	83.33	84.21	78.57	84.62	81.82	83.33	85.51	85.71	88.61	83.33	79.59	88.00	76.92	83.72	84.09	83.33	100.00	78.95	95.65	92.59	93.55	NA	92.19	83.93	70.59	75.00	59.09	94.74	100.00	100.00	90.91	97.73	95.95	83.97	92.25	8.28	0.673235	0.854354
N	cassette	TCF25	chr16	+	chr16:89958684-89961445;chr16:89958684-89961490	chr16:89958684-89960135;chr16:89960267-89961490,chr16:89960267-89961445		chr16:89960136-89960266			85.71	88.33	85.19	88.24	88.64	NA	98.67	100.00	98.18	96.49	97.59	100.00	100.00	100.00	98.41	98.51	98.57	100.00	87.50	79.55	91.89	90.62	88.71	94.44	82.61	87.76	87.14	94.29	92.86	100.00	75.00	81.82	84.00	86.15	89.83	86.59	87.91	86.73	-1.18	0.684052	0.885060
N	jcn_only_AA	CPQ	chr8	+	chr8:98041723-98078236	chr8:98041723-98067756		chr8:98067757-98078236	chr8:98078236-98078237		7.14	0.00	0.00	0.00	0.00	NA	0.00	4.88	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	3.33	0.00	0.00	3.03	0.00	0.00	0.00	0.00	3.45	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.67	0.095348	0.663989
K	intron_retention		chr17	+	chr17:43311568-43312198				chr17:43311567-43311568;chr17:43312198-43312199		43.75	100.00	48.08	100.00	95.00	100.00	NA	5.26	10.53	5.56	5.26	0.00	9.09	14.29	29.17	0.00	3.03	0.00	97.62	29.17	96.55	NA	65.38	NA	100.00	47.83	54.29	NA	81.25	NA	64.71	63.64	100.00	50.00	44.00	30.00	100.00	36.46	-63.54	0.105662	1.000000
N	jcn_only_AD	MLX	chr17	+	chr17:40722191-40723564	chr17:40722202-40723564		chr17:40722191-40722201	chr17:40722190-40722191		100.00	100.00	97.85	100.00	100.00	100.00	96.67	97.44	98.46	100.00	100.00	100.00	97.78	98.75	94.81	100.00	95.80	100.00	100.00	100.00	100.00	100.00	96.10	100.00	82.76	93.98	97.18	97.73	100.00	93.10	100.00	94.59	100.00	97.40	97.22	100.00	98.89	99.38	0.48	0.485695	0.731805
N	jcn_only_AA	STUB1	chr16	+	chr16:730685-731298;chr16:730685-731437;chr16:730685-731151;chr16:730685-732019;chr16:730685-731062;chr16:730685-731066	chr16:730685-731208					0.00	4.30	0.00	0.00	3.33	0.00	0.00	0.00	0.00	5.13	0.00	0.00	1.33	0.00	4.35	1.82	6.38	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	3.64	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.825615	0.929528
K	intron_retention	HNRNPA3	chr2	+	chr2:178080390-178080477				chr2:178080389-178080390;chr2:178080477-178080478		1.72	0.00	2.04	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	0.00	1.41	0.90	1.94	NA	0.00	0.00	0.00	0.00	0.00	20.00	3.92	NA	0.93	0.00	0.62	0.00	0.86	0.86	0.448824	1.000000
N	jcn_only_AA	SNRPC	chr6	+	chr6:34725329-34725688;chr6:34725329-34725625	chr6:34725329-34730371					0.00	23.26	3.33	10.00	5.13	0.00	3.70	0.00	5.71	8.00	5.71	6.00	3.95	0.00	5.80	2.99	3.45	7.14	14.29	2.13	5.08	5.00	10.81	5.00	0.00	7.69	7.55	14.29	7.23	4.88	18.75	20.41	42.86	10.42	18.00	12.24	9.12	1.06	-8.05	0.216338	0.663989
K	intron_retention	KPNB1	chr17	+	chr17:45760157-45761678				chr17:45760156-45760157;chr17:45761678-45761679		93.67	100.00	90.54	96.15	93.33	93.10	89.80	91.23	89.25	91.38	90.38	90.32	94.74	91.96	93.68	96.49	100.00	91.67	87.88	92.63	90.57	85.29	89.36	90.24	100.00	90.43	95.38	100.00	97.73	100.00	88.24	88.46	91.43	100.00	90.74	90.80	93.09	91.59	-1.49	0.651969	1.000000
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145049344;chr8:145012861-145016559;chr8:145012861-145047570;chr8:145012861-145027893;chr8:145012861-145017946;chr8:145012861-145024351	chr8:145012861-145013517	chr8:145049345-145049543;chr8:145016560-145016692;chr8:145047571-145047697;chr8:145027894-145028088;chr8:145017947-145018126;chr8:145024352-145025044	chr8:145013518-145013758			35.71	18.52	30.77	NA	NA	NA	31.03	61.29	23.53	67.39	43.27	57.89	40.20	72.09	27.78	60.94	51.18	72.00	46.15	50.00	NA	NA	48.28	69.23	32.65	46.15	28.57	NA	38.89	NA	NA	NA	28.57	56.25	37.14	64.29	31.84	50.00	18.16	0.029801	0.124575
N	alternative_acceptor		chr14	+	chr14:23789040-23791389	chr14:23789040-23790040		chr14:23790041-23791389	chr14:23791389-23791390		73.33	100.00	63.33	NA	70.00	NA	100.00	70.00	100.00	100.00	84.21	NA	100.00	72.73	81.25	100.00	78.95	NA	60.00	58.33	53.85	NA	83.33	NA	66.67	NA	100.00	80.00	86.67	NA	NA	58.82	NA	81.82	66.67	NA	100.00	71.37	-28.63	0.143382	0.645221
N	jcn_only_AA	ABCC3	chr17	+	chr17:80014643-80014742	chr17:80014643-80014715		chr17:80014716-80014742	chr17:80014742-80014743		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	96.52	100.00	100.00	100.00	100.00	100.00	0.00	0.784388	0.907789
N	alternative_acceptor	GGT1,SNRPD3	chr22	+	chr22:50960039-50960173	chr22:50960039-50960169		chr22:50960170-50960173	chr22:50960173-50960174		85.00	88.37	100.00	92.86	96.00	100.00	NA	NA	NA	NA	100.00	NA	100.00	NA	NA	100.00	NA	NA	90.00	92.86	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	86.67	95.83	89.29	93.75	90.00	100.00	90.00	89.77	-0.23	0.598181	0.846631
N	cassette	IDH3B	chr20	-	chr20:2640440-2640908	chr20:2640440-2640675;chr20:2640823-2640908		chr20:2640676-2640822			100.00	100.00	100.00	100.00	98.51	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	97.06	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144853280-144854164;chr1:144852444-144854164;chr1:144853271-144854164	chr1:144852500-144854164		chr1:144852444-144852499;chr1:144852500-144853270;chr1:144853271-144853279	chr1:144852443-144852444;chr1:144852499-144852500;chr1:144853270-144853271		95.00	100.00	90.64	93.62	100.00	92.86	92.31	95.38	94.00	94.38	95.83	91.00	100.00	90.28	88.29	91.67	90.00	93.27	100.00	94.40	94.69	96.83	94.67	94.76	NA	93.08	90.65	91.94	94.59	92.97	92.47	92.66	76.00	90.05	93.01	90.78	100.00	93.74	-6.26	0.963865	0.987074
N	alternative_first_exon	ELL	chr19	-	chr19:18583693-18583832,chr19:18583693-18588152,chr19:18583693-18588281,chr19:18583693-18592443,chr19:18583693-18612419,chr19:18583693-18626095,chr19:18583693-18627694;chr19:18583693-18643473;chr19:18583693-18632730	chr19:18583693-18586623	chr19:18643474-18643624;chr19:18632731-18632937	chr19:18586624-18586743			0.00	0.00	0.00	NA	NA	NA	4.55	0.00	3.33	1.72	4.55	1.96	0.00	2.50	0.00	1.69	3.33	2.56	NA	2.38	NA	0.00	5.00	3.33	0.00	2.04	4.55	0.00	0.00	0.00	4.76	4.35	NA	7.14	4.55	3.49	0.00	2.21	2.21	0.573529	0.692907
N	alternative_donor	DOCK10	chr2	-	chr2:225630555-225630816;chr2:225630555-225634927	chr2:225630555-225633588		chr2:225630817-225633588;chr2:225633589-225634927	chr2:225633588-225633589;chr2:225634927-225634928		3.52	1.15	6.25	0.00	1.11	0.00	0.00	1.47	0.00	0.00	0.70	0.00	0.93	0.00	0.00	0.00	0.83	0.00	0.00	1.00	0.00	2.94	4.03	3.33	0.00	0.75	2.63	3.45	1.15	0.00	2.13	2.17	0.00	1.75	4.00	1.64	0.00	1.23	1.23	0.078446	0.470724
N	alternative_acceptor		chr6	+	chr6:36990147-36992992;chr6:36990147-36992548;chr6:36990147-36990971;chr6:36990147-36990964	chr6:36990147-36993567		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		90.07	94.12	NA	NA	100.00	NA	97.44	94.62	100.00	100.00	100.00	85.71	95.38	94.30	93.10	87.50	100.00	92.98	80.00	88.12	NA	NA	92.86	90.91	85.71	90.97	NA	87.50	100.00	93.65	95.95	100.00	92.00	84.21	90.00	89.15	93.06	92.63	-0.43	0.616337	0.854460
N	alternative_acceptor		chr20	+	chr20:60859226-60860542;chr20:60859226-60860591	chr20:60859226-60861638		chr20:60860543-60860591;chr20:60860592-60861638	chr20:60860591-60860592;chr20:60861638-60861639		95.24	83.33	90.91	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	91.67	NA	NA	100.00	NA	100.00	92.86	92.00	NA	100.00	NA	90.00	94.12	NA	90.91	100.00	88.24	100.00	94.05	-5.95	0.856341	0.948614
K	cassette	COPZ1	chr12	+	chr12:54736072-54739243	chr12:54736072-54737008;chr12:54737101-54739243		chr12:54737009-54737100			97.83	100.00	96.10	100.00	100.00	NA	98.28	100.00	100.00	95.59	99.01	100.00	98.26	100.00	96.43	97.78	97.89	97.92	100.00	95.45	95.35	100.00	98.51	100.00	NA	100.00	94.64	96.88	96.77	97.14	90.00	97.96	90.91	96.23	100.00	100.00	98.28	98.91	0.63	0.908601	0.973273
K	intron_retention	PEX16	chr11	-	chr11:45936020-45936154				chr11:45936019-45936020;chr11:45936154-45936155		0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	3.03	3.03	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	4.65	0.00	0.00	0.00	0.614952	1.000000
K	intron_retention		chr22	-	chr22:51018232-51018402				chr22:51018231-51018232;chr22:51018402-51018403		50.00	56.36	48.39	52.63	37.84	48.15	NA	NA	NA	NA	NA	NA	NA	NA	54.55	NA	NA	NA	33.33	25.93	29.03	NA	38.46	NA	37.78	40.74	57.14	45.00	47.37	31.82	38.89	26.98	28.21	35.71	44.00	60.87	35.55	39.81	4.26	0.728725	1.000000
N	jcn_only_AA	SKIV2L,VARS2	chr6	+	chr6:31936316-31936412;chr6:31936316-31936462	chr6:31936316-31936399		chr6:31936400-31936412;chr6:31936413-31936462	chr6:31936412-31936413;chr6:31936462-31936463		19.44	34.67	33.33	33.33	34.29	42.86	0.00	13.33	26.67	NA	NA	NA	9.09	NA	14.29	8.33	12.50	NA	17.39	26.32	12.50	NA	16.67	NA	11.11	29.03	14.71	18.18	29.41	25.00	32.50	28.30	30.00	18.75	40.91	20.69	14.25	26.32	12.07	0.299002	0.663989
K	intron_retention		chr11	+	chr11:248856-248931				chr11:248855-248856;chr11:248931-248932		6.31	5.53	5.84	2.25	3.11	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	1.82	0.00	0.00	0.00	4.73	5.13	4.55	3.90	2.47	2.94	3.06	8.72	7.62	2.56	4.84	4.35	4.23	4.61	4.29	6.03	4.76	4.55	3.67	4.68	1.00	0.931403	1.000000
N	cassette	UFD1L	chr22	-	chr22:19462624-19466347;chr22:19462624-19466605	chr22:19462624-19463018;chr22:19463126-19466605,chr22:19463126-19466347		chr22:19463019-19463125			70.00	92.31	76.92	NA	77.78	NA	70.83	88.89	72.00	75.00	72.73	78.95	73.53	86.36	100.00	73.33	80.00	73.08	50.00	77.78	73.68	76.00	64.29	68.00	NA	84.38	64.52	66.67	78.79	85.00	100.00	80.00	45.45	80.77	67.57	77.14	70.83	85.37	14.54	0.105061	0.688901
N	alternative_acceptor	AGAP3	chr7	+	chr7:150825772-150827290;chr7:150825772-150828158	chr7:150825772-150831486		chr7:150827291-150828158;chr7:150828159-150831486	chr7:150828158-150828159;chr7:150831486-150831487		98.25	94.74	98.29	84.62	93.75	NA	98.04	97.14	98.00	96.36	97.18	100.00	98.11	96.00	97.44	96.55	97.47	91.67	90.91	97.37	98.08	95.83	97.90	96.67	90.48	96.55	98.63	96.77	97.85	94.12	96.88	97.67	97.06	95.45	96.67	96.36	95.90	97.01	1.11	0.195157	0.660713
N	jcn_only_AA	CYSTM1	chr5	+	chr5:139574238-139622889;chr5:139574238-139661081	chr5:139574238-139608314		chr5:139608315-139622889;chr5:139622890-139661081	chr5:139622889-139622890;chr5:139661081-139661082		1.15	0.00	0.00	16.39	6.56	11.63	1.63	0.00	1.06	3.74	1.79	2.27	2.99	0.83	0.00	4.50	2.60	2.99	0.00	1.10	4.12	1.67	2.56	0.00	0.00	1.35	0.00	4.88	0.00	4.94	1.85	0.00	0.00	4.65	0.00	4.55	0.00	1.12	1.12	0.644855	0.841673
K	alternative_acceptor	JOSD2	chr19	-	chr19:51013703-51014373	chr19:51013706-51014373		chr19:51013703-51013705	chr19:51013702-51013703		70.97	72.73	60.87	69.23	69.57	72.73	60.87	70.83	80.95	100.00	84.21	63.64	80.77	75.86	88.89	88.24	68.18	81.82	71.88	60.00	78.05	64.29	54.55	54.55	55.56	61.11	75.00	84.62	64.00	70.00	62.86	68.75	54.84	NA	58.33	72.73	66.38	66.84	0.47	0.873587	0.956197
K	intron_retention	CSNK1D	chr17	-	chr17:80223673-80231181				chr17:80223672-80223673;chr17:80231181-80231182		0.00	0.00	1.41	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	4.44	3.17	NA	0.00	3.39	2.00	0.00	0.00	0.00	0.612201	1.000000
N	alternative_donor	SEC11C	chr18	+	chr18:56822614-56822919;chr18:56819845-56822919	chr18:56819918-56822919		chr18:56819845-56819917;chr18:56819918-56822613	chr18:56819844-56819845;chr18:56819917-56819918		91.89	100.00	96.55	100.00	97.14	100.00	100.00	100.00	96.15	98.11	97.50	100.00	98.04	100.00	93.75	98.08	97.27	98.28	94.20	96.88	98.08	92.00	94.87	92.59	100.00	100.00	96.97	91.30	97.14	100.00	92.00	96.88	95.08	92.59	98.31	96.25	99.02	98.44	-0.58	0.587552	0.799662
K	intron_retention	STK25	chr2	-	chr2:242437765-242438053				chr2:242437764-242437765;chr2:242438053-242438054		0.00	0.00	5.88	0.00	5.56	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	2.17	0.00	1.89	0.00	0.00	0.00	2.78	5.00	3.92	5.88	3.70	0.00	7.14	5.56	5.56	0.00	5.26	5.26	3.85	6.45	4.76	5.13	0.00	0.00	0.00	0.474514	1.000000
N	jcn_only_AA	C1orf162	chr1	+	chr1:112020051-112020272;chr1:112020051-112020856	chr1:112020051-112020347		chr1:112020273-112020347;chr1:112020348-112020856	chr1:112020347-112020348;chr1:112020856-112020857		90.28	79.25	80.00	86.67	83.33	81.25	82.14	89.47	81.82	90.54	92.43	90.00	85.71	73.33	NA	86.11	89.00	86.05	85.71	88.89	79.31	83.33	74.74	86.36	81.08	68.42	84.13	81.82	82.74	79.31	NA	81.58	78.38	75.00	70.51	77.36	81.61	88.89	7.28	0.994821	0.997956
K	coord_cassette	EMP3	chr19	+	chr19:48828868-48832608	chr19:48828868-48830086;chr19:48830180-48830777;chr19:48830922-48832608		chr19:48830087-48830179;chr19:48830778-48830921			98.05	95.06	99.39	98.63	97.83	96.64	99.55	99.58	100.00	99.47	98.91	99.13	99.04	100.00	100.00	99.67	99.13	99.62	95.88	98.71	97.77	98.58	99.38	99.18	91.92	97.85	96.43	99.01	99.35	98.73	98.23	95.09	90.74	98.61	98.47	98.79	95.47	98.47	3.00	0.070341	0.643829
N	alternative_acceptor	ENTPD6	chr20	+	chr20:25204794-25205797;chr20:25204794-25205821	chr20:25204794-25205840		chr20:25205798-25205821;chr20:25205822-25205840	chr20:25205821-25205822;chr20:25205840-25205841		68.75	67.86	67.86	NA	65.00	NA	86.00	77.78	81.40	84.21	84.44	90.00	79.49	77.78	80.43	79.17	89.74	90.00	71.43	62.86	73.68	66.67	69.05	60.00	76.19	79.49	72.73	85.71	70.27	75.00	66.67	68.75	70.59	70.59	70.59	62.96	73.81	73.27	-0.55	0.460704	0.762514
K	jcn_only_AA	RAD23A,TPM4	chr19	+	chr19:16204564-16212073	chr19:16204564-16206073		chr19:16206074-16212073	chr19:16212073-16212074		0.59	5.80	0.00	3.05	3.42	7.12	0.00	0.33	0.00	0.11	0.00	0.31	0.00	0.88	0.30	0.29	0.00	0.38	3.77	1.03	2.60	0.45	0.29	0.52	0.00	0.38	0.00	0.22	0.00	1.47	1.40	0.00	2.90	0.41	0.00	0.00	1.45	0.73	-0.71	0.252408	0.663989
N	alternative_donor	UNC50	chr2	+	chr2:99226503-99227237	chr2:99227098-99227237		chr2:99226503-99227097	chr2:99226502-99226503		4.44	0.00	8.97	NA	0.00	NA	1.39	0.00	0.00	2.78	0.00	0.00	0.00	1.89	1.35	1.96	1.61	0.00	0.00	0.00	0.00	0.00	3.64	9.52	NA	2.08	3.28	0.00	2.08	0.00	4.17	4.88	0.00	9.09	7.50	12.12	0.00	1.98	1.98	0.070923	0.453728
N	cassette	C1orf54	chr1	+	chr1:150245267-150248149	chr1:150245267-150246489;chr1:150246574-150248149		chr1:150246490-150246573			100.00	90.00	96.20	94.83	96.52	95.50	96.38	97.60	95.24	97.09	100.00	97.14	95.54	97.76	100.00	96.18	99.25	97.30	100.00	100.00	98.60	100.00	97.17	100.00	86.75	97.55	96.33	100.00	97.59	98.25	100.00	100.00	100.00	95.38	97.70	97.20	95.96	98.88	2.92	0.127930	0.709176
K	alternative_donor	ARAP1	chr11	-	chr11:72421022-72421478	chr11:72421022-72421429		chr11:72421430-72421478	chr11:72421478-72421479		88.78	72.73	83.68	NA	83.33	NA	100.00	96.12	94.32	96.25	96.77	96.30	96.62	92.52	90.65	97.73	98.45	95.00	NA	87.21	77.78	84.62	84.21	92.00	82.76	87.50	89.15	92.68	94.29	90.91	72.97	80.95	71.43	84.38	84.52	82.54	82.76	88.14	5.38	0.690573	0.868729
K	cassette	TBC1D10A	chr22	-	chr22:30688841-30689639	chr22:30688841-30689147;chr22:30689309-30689639		chr22:30689148-30689308			0.00	0.00	3.03	9.09	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	10.53	0.00	0.00	NA	NA	3.57	6.25	4.35	4.55	0.00	0.00	5.00	NA	0.00	NA	3.70	5.26	NA	5.00	5.56	0.00	0.00	0.00	0.00	0.373901	0.709176
K	jcn_only_AA	LINC00493	chr20	+	chr20:18548241-18549882	chr20:18548241-18549879		chr20:18549880-18549882	chr20:18549882-18549883		30.19	35.58	36.25	24.39	29.76	28.57	29.11	26.87	32.18	28.57	30.34	28.21	24.05	32.20	25.81	26.39	30.14	39.47	22.95	40.38	30.00	35.48	36.92	31.82	40.91	36.00	30.99	27.50	35.71	25.00	33.85	23.71	31.43	32.43	27.78	30.95	30.27	33.03	2.76	0.467362	0.728679
K	intron_retention		chr22	-	chr22:50962854-50964674				chr22:50962853-50962854;chr22:50964674-50964675		93.66	80.00	86.60	100.00	82.05	97.85	NA	76.67	69.57	72.73	60.00	NA	58.33	72.09	80.49	88.24	63.64	NA	93.94	94.38	94.83	100.00	84.62	89.29	100.00	96.08	91.72	97.06	93.10	93.67	89.58	92.26	87.27	93.02	89.66	91.94	87.27	91.62	4.35	0.820429	1.000000
K	intron_retention		chr1	-	chr1:151027603-151028152				chr1:151027602-151027603;chr1:151028152-151028153		25.64	11.36	32.11	0.00	0.00	NA	1.67	3.30	4.42	1.74	4.18	1.37	5.19	3.92	9.39	3.06	3.27	2.72	NA	19.54	11.54	16.00	15.46	21.37	NA	24.14	23.28	11.76	8.82	9.18	22.58	27.84	0.00	20.51	21.93	18.88	3.43	21.06	17.63	0.165876	1.000000
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3686593-3686993	chr20:3686688-3686993		chr20:3686593-3686687	chr20:3686592-3686593		91.89	100.00	100.00	NA	NA	100.00	98.24	98.16	99.47	98.51	97.69	97.12	98.77	97.94	98.22	100.00	100.00	95.05	NA	91.53	100.00	NA	100.00	91.07	100.00	96.38	100.00	94.74	94.12	95.35	100.00	97.06	NA	100.00	100.00	90.70	99.38	97.16	-2.22	0.072531	0.585944
K	intron_retention		chr20	+	chr20:2845964-2846044				chr20:2845963-2845964;chr20:2846044-2846045		2.13	3.12	3.51	0.00	3.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	2.86	1.41	4.55	9.52	0.00	0.00	0.00	2.60	0.00	2.04	5.56	4.08	1.59	2.41	6.45	4.17	7.14	0.65	1.06	0.41	0.337016	1.000000
N	jcn_only_AA	SNRPD1	chr18	+	chr18:19202763-19203835;chr18:19202763-19203708	chr18:19202763-19203831		chr18:19203709-19203831;chr18:19203832-19203835	chr18:19203831-19203832;chr18:19203835-19203836		0.00	3.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.201473	0.663989
N	alternative_donor	C14orf119	chr14	+	chr14:23565160-23566866;chr14:23564829-23566866	chr14:23565231-23566866		chr14:23564829-23565159;chr14:23565160-23565230	chr14:23564828-23564829;chr14:23565159-23565160		3.03	0.00	3.33	0.00	0.00	NA	0.00	2.78	0.00	1.47	2.25	0.00	0.98	2.94	2.74	2.50	1.12	0.00	3.70	1.20	2.17	0.00	1.61	4.17	7.14	2.90	1.28	0.00	0.99	0.00	3.03	3.03	0.00	3.23	2.94	5.17	0.49	2.92	2.43	0.601542	0.811269
N	alternative_last_exon		chr12	+	chr12:108959208-108962606	chr12:108959208-108960965	chr12:108962607-108963160	chr12:108960966-108961684			97.92	98.78	100.00	93.33	98.31	93.33	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	90.32	NA	98.53	100.00	95.70	100.00	100.00	100.00	97.06	100.00	98.86	100.00	96.67	90.91	98.11	99.30	91.89	96.97	98.59	100.00	98.66	100.00	1.34	0.261001	0.474933
N	alternative_acceptor		chr11	+	chr11:610762-610962	chr11:610762-610953		chr11:610954-610962	chr11:610962-610963		87.50	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AA	AOAH	chr7	-	chr7:36568121-36570023;chr7:36561722-36570023;chr7:36564906-36570023;chr7:36568829-36570023	chr7:36567958-36570023		chr7:36561722-36564905;chr7:36564906-36567957;chr7:36567958-36568120;chr7:36568121-36568828	chr7:36561721-36561722;chr7:36564905-36564906;chr7:36567957-36567958;chr7:36568120-36568121		0.00	6.22	4.00	4.65	4.23	4.79	0.00	0.00	1.29	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.08	9.76	4.67	0.00	2.84	4.48	0.00	1.64	3.68	0.00	0.00	2.38	2.44	5.43	10.83	6.14	6.42	1.49	3.04	0.82	-2.22	0.537211	0.775199
K	alternative_acceptor	MED19	chr11	-	chr11:57471869-57472190	chr11:57472108-57472190		chr11:57471869-57472107	chr11:57471868-57471869		0.00	0.00	4.17	13.33	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	4.55	0.00	0.00	0.00	NA	5.26	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.174822	0.660713
K	intron_retention	EEF2	chr19	-	chr19:3980065-3980511				chr19:3980064-3980065;chr19:3980511-3980512		3.45	0.00	1.63	0.00	0.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.13	0.00	0.00	0.00	4.76	1.10	2.17	1.15	1.27	0.00	1.27	0.67	0.69	0.00	0.00	10.24	4.18	0.00	1.19	0.71	0.78	0.00	2.36	2.36	0.182040	1.000000
N	cassette	DAP3	chr1	+	chr1:155701207-155707947;chr1:155701207-155706736	chr1:155701207-155701734;chr1:155701825-155707947,chr1:155701825-155706736		chr1:155701735-155701824			100.00	100.00	100.00	98.15	98.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	97.14	98.57	100.00	98.53	98.88	100.00	95.92	100.00	100.00	100.00	98.67	100.00	100.00	100.00	93.98	97.50	95.56	100.00	98.57	100.00	1.43	0.229174	0.709176
N	alternative_last_exon		chr7	+	chr7:99957161-99971203	chr7:99957161-99964971	chr7:99971204-99971343	chr7:99964972-99965454			61.90	92.48	78.46	86.11	92.19	95.35	20.00	4.76	8.33	NA	14.29	NA	26.32	8.33	68.18	NA	15.79	NA	98.81	86.21	95.77	72.22	91.18	84.62	95.90	81.25	92.31	77.78	88.46	78.57	92.73	99.03	95.00	82.76	82.86	89.19	93.74	71.58	-22.17	0.500572	0.646572
N	alternative_acceptor	ITGB1BP1	chr2	-	chr2:9547728-9548241;chr2:9547714-9548241	chr2:9547035-9548241		chr2:9547035-9547713;chr2:9547714-9547727	chr2:9547034-9547035;chr2:9547713-9547714		25.00	38.71	NA	42.31	27.59	60.00	58.00	40.00	NA	51.06	52.63	59.46	31.58	NA	NA	44.83	36.00	46.15	32.00	33.33	58.70	33.33	36.36	41.18	56.25	40.00	NA	29.41	32.00	35.00	33.33	20.00	51.22	35.71	25.00	46.67	44.97	33.33	-11.64	0.106434	0.598353
N	alternative_acceptor	LRP1,PRR13	chr12	+	chr12:53836518-53837312;chr12:53836518-53837350;chr12:53836518-53837324;chr12:53836518-53837462;chr12:53836518-53837270;chr12:53836518-53837179	chr12:53836518-53837174		chr12:53837175-53837179;chr12:53837180-53837270;chr12:53837271-53837312;chr12:53837313-53837324;chr12:53837325-53837350;chr12:53837351-53837462	chr12:53837179-53837180;chr12:53837270-53837271;chr12:53837312-53837313;chr12:53837324-53837325;chr12:53837350-53837351;chr12:53837462-53837463		66.67	71.88	69.35	64.29	65.33	50.00	65.85	63.83	63.57	70.93	69.57	68.75	65.85	69.49	71.43	67.57	73.21	68.92	68.42	73.39	64.04	75.68	81.93	79.41	87.50	69.23	73.39	66.67	69.77	63.49	66.96	75.00	63.41	64.06	72.73	67.95	67.13	68.09	0.96	0.582179	0.841528
K	cassette	SUPT20H	chr13	-	chr13:37583947-37586328	chr13:37583947-37584688;chr13:37584793-37586328		chr13:37584689-37584792			40.74	22.73	31.11	9.52	9.30	17.39	9.09	18.18	12.12	8.70	8.11	16.67	12.50	31.58	9.09	7.14	10.00	11.76	8.11	32.26	12.77	6.25	10.87	26.67	18.75	31.25	16.33	5.88	9.09	12.00	33.33	22.50	9.38	16.13	10.26	14.81	10.94	31.92	20.98	0.001052	0.112365
K	intron_retention	WDR45	chrX	-	chrX:48932941-48933022				chrX:48932940-48932941;chrX:48933022-48933023		17.02	10.00	11.11	28.57	8.51	4.65	0.00	0.00	3.33	NA	NA	NA	0.00	0.00	6.67	NA	NA	NA	5.56	12.50	7.32	15.38	10.53	16.67	6.82	11.11	12.77	18.75	3.33	11.11	15.91	12.96	8.11	18.18	0.00	12.50	6.19	11.80	5.62	0.493108	1.000000
N	cassette	CIB1	chr15	-	chr15:90774740-90776900	chr15:90774740-90775450;chr15:90775680-90776900		chr15:90775451-90775679			100.00	100.00	94.83	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	93.75	100.00	95.52	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	89.29	88.71	94.12	100.00	97.67	100.00	100.00	0.00	0.274845	0.709176
K	cassette	ZFAND2B	chr2	+	chr2:220073362-220073983	chr2:220073362-220073698;chr2:220073772-220073983		chr2:220073699-220073771			97.14	100.00	93.33	100.00	98.21	96.67	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.06	95.00	96.15	100.00	97.06	NA	97.50	100.00	100.00	100.00	100.00	100.00	100.00	92.86	95.70	94.12	100.00	100.00	98.75	100.00	1.25	0.792875	0.936947
K	intron_retention		chr7	-	chr7:100279395-100279486				chr7:100279394-100279395;chr7:100279486-100279487		8.82	13.79	4.26	NA	NA	NA	7.14	NA	11.11	NA	9.09	NA	7.69	NA	16.00	NA	0.00	NA	NA	20.00	NA	16.67	14.29	NA	0.00	13.33	8.57	NA	NA	NA	20.00	13.51	NA	11.76	13.04	9.09	7.42	16.66	9.25	0.615100	1.000000
K	jcn_only_AA	PITRM1	chr10	-	chr10:3185968-3186483;chr10:3185694-3186483	chr10:3185924-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		12.50	16.67	14.81	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.90	1.75	0.00	NA	7.14	0.00	2.04	6.45	0.00	NA	5.26	11.11	0.00	0.00	4.41	5.88	11.11	0.00	0.00	0.00	2.13	0.00	5.57	5.57	0.843531	0.938257
N	cassette	TATDN3	chr1	+	chr1:212977994-212988354;chr1:212981191-212988354	chr1:212977994-212985589,chr1:212981191-212985589;chr1:212985671-212988354		chr1:212985590-212985670			80.00	100.00	100.00	NA	NA	NA	100.00	100.00	94.74	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.74	100.00	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	91.67	90.00	NA	NA	NA	NA	100.00	97.37	-2.63	0.141549	0.709176
N	jcn_only_AA	ATF6B	chr6	-	chr6:32084882-32085099;chr6:32084908-32085099	chr6:32084885-32085099		chr6:32084882-32084884;chr6:32084885-32084907	chr6:32084881-32084882;chr6:32084884-32084885		91.80	100.00	90.77	NA	96.43	NA	95.45	92.42	90.77	95.45	95.15	97.47	92.80	91.07	91.03	95.00	95.41	97.56	92.31	91.30	91.18	86.96	93.88	91.30	100.00	100.00	88.24	88.89	93.44	86.67	100.00	89.13	100.00	94.12	95.56	100.00	97.72	92.11	-5.61	0.341667	0.663989
N	jcn_only_AA	ADAM10	chr15	-	chr15:58889718-58891796	chr15:58889841-58891796		chr15:58889718-58889840	chr15:58889717-58889718		100.00	100.00	98.23	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.92	98.33	97.78	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	98.61	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	0.00	0.944004	0.981281
K	jcn_only_AA	TFPT	chr19	-	chr19:54611515-54611632	chr19:54611552-54611632		chr19:54611515-54611551	chr19:54611514-54611515		96.47	97.82	100.00	100.00	98.08	98.29	98.61	100.00	100.00	100.00	100.00	100.00	98.51	100.00	95.12	98.36	97.53	93.75	97.55	98.48	98.70	100.00	100.00	100.00	99.09	100.00	100.00	100.00	100.00	98.04	98.21	100.00	96.43	100.00	98.59	100.00	98.16	99.24	1.08	0.252213	0.663989
K	intron_retention	NCF2	chr1	-	chr1:183536481-183538276				chr1:183536480-183536481;chr1:183538276-183538277		2.68	0.00	5.36	0.00	0.83	0.00	0.62	1.18	0.00	0.00	0.65	0.00	0.94	0.38	0.00	0.50	1.06	0.14	5.26	2.17	0.00	1.40	3.68	0.28	0.00	2.33	1.75	0.00	1.88	0.19	0.79	1.16	0.00	2.05	2.89	0.45	0.31	1.67	1.36	0.924189	1.000000
K	alternative_acceptor	RABL6	chr9	+	chr9:139733574-139733765	chr9:139733574-139733673		chr9:139733674-139733765	chr9:139733765-139733766		93.94	90.20	97.44	91.67	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.71	100.00	93.22	89.47	90.77	100.00	96.55	100.00	95.71	88.46	93.22	100.00	100.00	100.00	90.00	88.10	92.31	100.00	90.24	87.50	94.47	91.97	-2.50	0.571479	0.835900
K	jcn_only_AA	MYO18A	chr17	-	chr17:27409457-27413455	chr17:27412667-27413455					0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr17	-	chr17:7497323-7497555				chr17:7497322-7497323;chr17:7497555-7497556		3.33	13.33	3.08	NA	21.43	NA	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	NA	2.27	31.82	0.00	5.13	0.00	NA	0.00	4.76	0.00	0.00	6.25	6.98	2.25	20.00	0.00	0.00	3.12	6.67	1.14	-5.53	0.798879	1.000000
K	intron_retention		chr2	-	chr2:74760807-74761008				chr2:74760806-74760807;chr2:74761008-74761009		15.38	15.00	21.05	NA	22.22	NA	0.00	0.00	NA	0.00	6.45	0.00	3.57	NA	NA	0.00	3.33	0.00	10.00	0.00	5.56	10.00	10.00	NA	16.67	7.14	3.33	NA	8.51	0.00	20.00	5.88	5.88	0.00	20.00	18.18	7.94	7.14	-0.80	0.590255	1.000000
N	cassette	DHRS3	chr1	-	chr1:12628454-12640550;chr1:12632882-12640550	chr1:12628454-12638745,chr1:12632882-12638745;chr1:12638985-12640550		chr1:12638746-12638984			89.47	93.10	92.31	NA	90.00	NA	95.89	100.00	88.89	NA	96.83	NA	94.44	100.00	NA	90.00	88.14	NA	93.75	100.00	94.87	NA	90.00	NA	100.00	100.00	95.24	NA	100.00	NA	84.62	90.48	88.57	NA	NA	NA	94.09	100.00	5.91	0.674891	0.882035
K	intron_retention	DLG4	chr17	-	chr17:7094678-7095211				chr17:7094677-7094678;chr17:7095211-7095212		25.81	32.14	25.93	NA	36.36	NA	0.00	NA	NA	NA	NA	NA	9.52	0.00	NA	NA	0.00	NA	NA	30.77	16.67	NA	36.84	NA	40.00	33.33	29.63	NA	30.00	NA	NA	21.05	36.36	NA	31.58	NA	32.14	28.29	-3.85	0.997591	1.000000
K	intron_retention		chr16	-	chr16:15138265-15141298				chr16:15138264-15138265;chr16:15141298-15141299		0.00	0.00	2.44	0.00	2.86	0.00	0.69	1.45	0.00	0.00	0.00	1.12	0.00	1.43	0.00	1.35	0.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.25	0.00	0.00	2.17	0.00	2.04	6.06	0.00	2.02	3.80	1.83	0.00	1.44	1.44	0.329410	1.000000
K	jcn_only_AD	UPF3A	chr13	+	chr13:115067343-115070263	chr13:115067501-115070263		chr13:115067343-115067500	chr13:115067342-115067343		100.00	100.00	92.31	NA	100.00	NA	96.67	100.00	100.00	100.00	90.32	NA	100.00	100.00	100.00	95.24	96.43	NA	93.75	93.75	100.00	100.00	97.30	100.00	100.00	100.00	100.00	87.50	100.00	NA	NA	100.00	NA	100.00	90.91	100.00	100.00	100.00	0.00	0.717328	0.853669
K	alternative_acceptor	SIPA1L1	chr14	+	chr14:72202109-72204960	chr14:72202109-72204957		chr14:72204958-72204960	chr14:72204960-72204961		43.37	36.51	48.33	46.67	45.83	41.27	NA	34.62	51.61	41.67	NA	27.78	36.36	54.55	50.00	NA	NA	45.45	50.00	29.73	48.08	35.71	39.13	41.18	34.48	46.51	40.35	39.39	43.48	42.00	43.94	45.95	50.00	48.57	45.83	48.65	36.51	43.66	7.15	0.899847	0.965081
K	alternative_donor	PPCS	chr1	+	chr1:42924977-42925273;chr1:42923239-42925273	chr1:42923022-42925273		chr1:42923022-42923238;chr1:42923239-42924976	chr1:42923021-42923022;chr1:42923238-42923239		94.12	97.14	89.47	NA	96.88	NA	98.65	95.92	93.65	91.30	92.65	100.00	96.05	93.02	91.80	97.50	93.75	100.00	100.00	94.29	95.45	78.57	86.05	78.57	100.00	90.48	88.64	81.82	88.37	94.12	96.67	94.83	100.00	88.89	88.52	85.00	99.33	94.21	-5.12	0.002800	0.127001
N	jcn_only_AA	C7orf50	chr7	-	chr7:1049937-1067893;chr7:1061228-1067893;chr7:1049780-1067893;chr7:1049942-1067893	chr7:1066664-1067893		chr7:1049780-1049936;chr7:1049937-1049941;chr7:1049942-1061227;chr7:1061228-1066663	chr7:1049779-1049780;chr7:1049936-1049937;chr7:1049941-1049942;chr7:1061227-1061228		0.00	0.00	3.33	6.67	0.00	0.00	7.69	10.26	7.69	0.00	6.80	0.00	5.17	4.00	12.50	0.00	3.85	0.00	0.00	5.56	2.94	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	1.08	2.00	0.92	0.719512	0.875250
K	intron_retention	RPS15	chr19	+	chr19:1440253-1440347				chr19:1440252-1440253;chr19:1440347-1440348		1.25	0.60	1.11	0.40	0.16	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.08	0.00	0.00	0.70	1.98	0.82	0.34	0.33	0.56	0.20	0.00	0.00	0.34	0.00	0.21	6.73	3.10	2.34	0.33	0.44	0.22	0.40	0.62	0.22	0.690154	1.000000
N	alternative_acceptor	YIPF3	chr6	-	chr6:43480298-43480498	chr6:43480302-43480498		chr6:43480298-43480301	chr6:43480297-43480298		100.00	100.00	97.18	100.00	98.11	93.33	95.74	100.00	95.65	100.00	100.00	100.00	96.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	95.65	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	97.01	100.00	100.00	100.00	98.11	100.00	100.00	0.00	0.543439	0.821984
N	jcn_only_AA	EML3	chr11	-	chr11:62371462-62371584	chr11:62371514-62371584		chr11:62371462-62371513	chr11:62371461-62371462		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	94.87	95.45	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.174822	0.663989
N	alternative_acceptor	CHMP1A	chr16	-	chr16:89713123-89713610	chr16:89713142-89713610		chr16:89713123-89713141	chr16:89713122-89713123		5.83	10.87	4.63	5.26	0.00	NA	0.00	0.66	0.00	0.77	0.71	0.00	0.00	0.66	1.75	0.70	0.84	2.53	7.69	3.49	0.00	5.66	6.25	5.88	12.50	1.74	2.94	5.08	2.78	2.13	3.70	4.42	4.17	3.57	4.49	5.69	5.93	2.62	-3.31	0.219146	0.671511
K	intron_retention	GLT8D1	chr3	-	chr3:52729052-52729205				chr3:52729051-52729052;chr3:52729205-52729206		26.09	15.91	12.20	NA	14.29	NA	4.65	0.00	0.00	NA	6.90	NA	4.88	0.00	0.00	14.29	18.18	NA	7.14	12.50	15.15	NA	22.22	NA	31.82	9.52	13.64	NA	16.67	30.00	NA	13.64	11.11	22.22	28.57	35.71	9.12	9.52	0.39	0.670379	1.000000
N	jcn_only_AA	TTYH3	chr7	+	chr7:2687273-2689200;chr7:2687273-2687547	chr7:2687273-2687592					100.00	87.50	91.14	NA	NA	NA	95.88	94.64	97.06	91.98	88.80	91.14	95.32	97.64	100.00	93.94	93.63	90.62	100.00	94.44	NA	95.08	89.34	92.59	100.00	96.67	100.00	94.20	91.89	93.33	96.97	93.75	NA	93.92	92.31	94.89	95.88	96.82	0.94	0.701747	0.867936
N	jcn_only_AD	ZFYVE19	chr15	+	chr15:41101657-41102846;chr15:41102670-41102846	chr15:41102415-41102846					95.83	98.15	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	93.94	100.00	100.00	NA	97.30	NA	97.22	100.00	94.29	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.08	100.00	0.92	0.480339	0.726209
N	jcn_only_AA	EPN1	chr19	+	chr19:56186802-56189872;chr19:56186802-56189892	chr19:56186802-56188411		chr19:56188412-56189872;chr19:56189873-56189892	chr19:56189872-56189873;chr19:56189892-56189893		5.26	0.00	0.00	NA	0.00	NA	12.16	8.89	2.56	2.56	6.10	0.00	11.36	7.14	13.51	6.90	4.12	4.76	NA	0.00	0.00	0.00	4.65	NA	0.00	6.98	0.00	0.00	0.00	NA	0.00	10.71	NA	4.17	4.76	6.67	5.68	6.12	0.44	0.769389	0.896803
N	alternative_acceptor	TRAPPC10,TRPM2	chr21	+	chr21:45799081-45802600	chr21:45799081-45800716		chr21:45800717-45802600	chr21:45802600-45802601		0.00	8.57	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.00	0.00	NA	0.00	2.13	0.00	6.45	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	1.89	1.43	6.45	0.00	-6.45	0.077586	0.585944
K	alternative_donor	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31500689-31503143	chr6:31500689-31502262		chr6:31502263-31503143	chr6:31503143-31503144		48.28	25.00	58.10	25.00	22.95	16.67	14.43	30.00	22.62	22.89	17.86	21.82	19.20	35.71	35.58	23.42	22.22	17.46	13.51	42.72	15.73	63.08	57.02	71.76	46.30	49.48	46.15	46.67	45.68	36.84	43.55	46.90	14.47	67.21	52.15	66.05	16.84	43.13	26.30	0.011349	0.225202
K	intron_retention	LGALS9	chr17	+	chr17:25974459-25975861				chr17:25974458-25974459;chr17:25975861-25975862		3.70	4.12	10.00	1.54	2.37	2.33	0.00	0.26	0.00	0.00	0.16	0.00	0.23	0.27	0.00	0.90	0.19	0.00	3.12	1.71	1.75	4.90	5.40	3.11	3.42	1.27	5.38	3.11	3.69	3.17	2.15	4.46	2.71	6.42	3.52	3.54	2.92	1.49	-1.43	0.315800	1.000000
N	intron_retention		chr1	-	chr1:11983173-11983247				chr1:11983172-11983173;chr1:11983247-11983248		100.00	100.00	97.96	100.00	100.00	NA	94.44	93.75	97.92	100.00	94.83	100.00	100.00	100.00	100.00	96.97	98.11	100.00	100.00	96.55	93.55	100.00	98.21	100.00	100.00	96.00	96.30	100.00	91.89	92.86	100.00	100.00	100.00	88.46	100.00	100.00	100.00	98.28	-1.72	0.597477	1.000000
N	jcn_only_AD	BUD13	chr11	-	chr11:116619292-116627861	chr11:116619292-116626943		chr11:116626944-116627861	chr11:116627861-116627862		0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.177177	0.657607
K	alternative_acceptor	TUBGCP2	chr10	-	chr10:135096689-135097385	chr10:135096726-135097385		chr10:135096689-135096725	chr10:135096688-135096689		96.00	100.00	94.00	88.46	91.80	86.21	100.00	100.00	100.00	100.00	95.92	100.00	95.16	100.00	86.96	97.22	98.00	100.00	94.64	92.86	96.77	100.00	89.09	100.00	100.00	100.00	92.86	90.00	92.45	91.30	96.67	92.00	89.29	90.00	96.77	93.94	97.58	98.34	0.76	0.628013	0.856659
K	cassette	PQLC1	chr18	-	chr18:77679401-77703328;chr18:77679401-77693968	chr18:77679401-77690227;chr18:77690312-77693968,chr18:77690312-77703328		chr18:77690228-77690311			0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	4.35	2.50	2.25	3.85	2.17	0.00	3.12	4.41	2.11	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	6.82	2.56	3.77	0.00	0.00	3.33	0.00	1.82	2.13	1.32	0.00	0.00	0.00	0.811724	0.936947
K	alternative_donor	RNF149,SUCLG1	chr2	-	chr2:84658784-84660475	chr2:84658784-84659441		chr2:84659442-84660475	chr2:84660475-84660476		2.70	0.00	9.62	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	2.04	1.59	0.00	0.00	0.00	2.63	0.00	2.78	2.30	6.90	0.00	5.41	4.00	3.12	1.22	2.78	3.57	1.69	0.00	2.94	1.09	4.55	0.00	2.67	2.67	0.048722	0.393754
N	alternative_acceptor	OGDH	chr7	+	chr7:44714157-44714776	chr7:44714157-44714743		chr7:44714744-44714776	chr7:44714776-44714777		0.00	20.00	3.08	NA	NA	NA	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.22	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.437209	0.747010
K	intron_retention	CHKB	chr22	-	chr22:51020292-51020677				chr22:51020291-51020292;chr22:51020677-51020678		62.50	33.33	66.07	NA	73.33	NA	4.76	6.25	13.04	18.75	13.33	NA	26.47	21.88	30.61	25.00	6.67	NA	53.85	54.29	47.62	69.23	63.33	50.00	61.54	53.19	59.09	52.38	55.00	66.67	50.00	57.50	43.75	68.97	71.05	71.43	38.54	51.59	13.05	0.722059	1.000000
K	cassette	GTF3C5	chr9	+	chr9:135930197-135931398	chr9:135930197-135930330;chr9:135930352-135931398		chr9:135930331-135930351			12.90	12.24	17.07	18.18	14.29	5.00	13.89	8.70	7.69	5.56	15.38	0.00	11.43	11.11	15.79	11.54	9.38	7.14	10.71	17.24	10.00	15.79	11.90	6.25	18.18	17.24	24.32	20.00	12.50	0.00	13.89	16.00	10.00	20.83	8.57	13.64	11.84	13.39	1.56	0.684202	0.885060
K	intron_retention	RNF220	chr1	+	chr1:45101835-45110369				chr1:45101834-45101835;chr1:45110369-45110370		8.82	1.39	3.37	10.00	7.69	NA	5.05	6.90	1.39	1.85	3.53	11.54	3.16	0.00	0.00	5.19	3.03	3.45	10.00	4.17	23.33	5.71	7.14	10.00	8.51	0.00	3.12	3.85	5.77	4.17	7.69	2.13	17.65	6.98	6.38	7.50	6.78	5.54	-1.24	0.464359	1.000000
N	coord_cassette	SMAP2	chr1	+	chr1:40839896-40878687	chr1:40839896-40874324;chr1:40874411-40875428;chr1:40875508-40878687		chr1:40874325-40874410;chr1:40875429-40875507			95.45	100.00	97.94	NA	NA	100.00	97.59	100.00	100.00	98.28	100.00	98.27	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.40	90.48	100.00	100.00	100.00	100.00	96.94	100.00	100.00	100.00	98.29	100.00	97.94	100.00	96.55	95.35	98.94	100.00	98.70	-1.30	0.230147	0.643829
N	alternative_acceptor	COASY	chr17	+	chr17:40717330-40717488;chr17:40717330-40717493	chr17:40717330-40717623		chr17:40717489-40717493;chr17:40717494-40717623	chr17:40717493-40717494;chr17:40717623-40717624		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	2.86	NA	5.26	0.00	0.00	0.00	0.00	6.67	8.33	2.44	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	PIK3C3	chr18	+	chr18:39629570-39644703	chr18:39629570-39637846;chr18:39638016-39644703		chr18:39637847-39638015		chr18:39629256-39629569;chr18:39644704-39644794	100.00	100.00	87.88	94.12	95.65	84.62	100.00	100.00	100.00	94.74	100.00	NA	100.00	100.00	93.75	86.36	100.00	NA	87.50	82.35	90.91	87.50	92.86	100.00	91.67	90.00	100.00	94.12	100.00	100.00	80.00	82.76	76.19	96.30	100.00	92.86	95.84	95.00	-0.84	0.928577	0.982136
N	cassette	RPS6KA1	chr1	+	chr1:26863461-26873679;chr1:26872527-26873679;chr1:26869713-26873679	chr1:26872527-26873357,chr1:26863461-26873357,chr1:26869713-26873357;chr1:26873475-26873679		chr1:26873358-26873474			95.83	100.00	94.81	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	NA	95.12	100.00	100.00	100.00	96.00	100.00	92.86	94.38	100.00	100.00	NA	92.86	92.75	NA	100.00	93.62	93.75	100.00	95.47	-4.53	0.032228	0.450829
K	intron_retention	ARFGAP1	chr20	+	chr20:61912700-61914170				chr20:61912699-61912700;chr20:61914170-61914171		2.78	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	6.90	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.17	5.26	0.00	0.00	3.23	0.00	0.00	0.00	0.00	3.70	0.00	2.94	0.00	3.57	0.00	0.00	0.00	0.601311	1.000000
N	coord_cassette	RHOA	chr3	-	chr3:49397816-49412866	chr3:49397816-49398360;chr3:49398500-49399928;chr3:49400060-49405860;chr3:49405982-49412866		chr3:49398361-49398499;chr3:49399929-49400059;chr3:49405861-49405981			100.00	100.00	98.41	100.00	97.78	NA	99.05	99.21	98.98	99.03	100.00	100.00	99.57	100.00	100.00	99.53	99.30	100.00	92.31	100.00	100.00	99.00	100.00	100.00	100.00	100.00	98.47	99.33	100.00	100.00	97.97	100.00	100.00	100.00	99.37	98.85	99.78	100.00	0.22	0.451624	0.692112
K	coord_cassette	SDHAF2	chr11	+	chr11:61197655-61213412	chr11:61197655-61204232;chr11:61204433-61205096;chr11:61205321-61213412		chr11:61204233-61204432;chr11:61205097-61205320			0.00	0.00	0.00	0.00	7.14	NA	10.00	NA	NA	18.18	7.14	NA	8.33	20.00	NA	10.00	15.38	NA	NA	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	-4.17	0.944380	0.972993
N	cassette	UNC13D	chr17	-	chr17:73824168-73826108	chr17:73824168-73824867;chr17:73825065-73826108		chr17:73824868-73825064			97.14	100.00	100.00	84.62	90.62	100.00	100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	100.00	100.00	100.00	NA	96.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.943564	0.985246
K	alternative_donor	YBX3	chr12	-	chr12:10854734-10854857;chr12:10854734-10855010;chr12:10854734-10856658	chr12:10854734-10856649		chr12:10854858-10855010;chr12:10855011-10856649;chr12:10856650-10856658	chr12:10855010-10855011;chr12:10856649-10856650;chr12:10856658-10856659		95.00	100.00	85.14	88.46	88.00	80.00	90.91	89.29	88.83	87.10	92.96	85.05	89.09	85.71	87.17	89.15	90.14	90.59	91.67	84.21	83.33	85.42	88.10	83.33	NA	94.44	85.53	85.94	94.87	85.71	78.95	87.14	92.31	80.39	85.71	84.71	91.67	87.50	-4.17	0.159403	0.563271
K	cassette	COPS7A	chr12	+	chr12:6839674-6840165	chr12:6839674-6839834;chr12:6839987-6840165		chr12:6839835-6839986			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	92.31	96.67	100.00	NA	100.00	95.65	100.00	96.15	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	cassette	EPB41L3	chr18	-	chr18:5393478-5395607;chr18:5394793-5395607	chr18:5393478-5395065,chr18:5394793-5395065;chr18:5395147-5395607		chr18:5395066-5395146			92.72	83.78	94.76	100.00	91.30	90.91	90.32	92.91	92.11	93.62	92.95	94.81	88.08	93.89	91.55	91.00	92.77	94.83	100.00	93.65	89.74	98.13	93.91	94.92	100.00	96.19	93.99	94.90	90.21	96.77	94.57	92.83	88.24	93.60	94.53	93.67	89.28	93.77	4.49	0.455832	0.755786
K	intron_retention		chr17	-	chr17:47007975-47009004				chr17:47007974-47007975;chr17:47009004-47009005		5.00	0.00	6.15	0.00	0.00	0.45	0.00	6.45	4.44	2.17	1.16	2.08	1.01	0.00	9.52	0.00	0.00	2.00	0.00	1.30	1.05	3.39	0.66	0.00	0.00	8.16	5.26	1.45	0.00	1.06	2.97	4.17	0.35	2.17	2.54	4.13	0.00	3.99	3.99	0.212147	1.000000
N	cassette	PLD3	chr19	+	chr19:40854676-40872285;chr19:40854676-40872325;chr19:40854676-40872290	chr19:40854676-40871568;chr19:40871838-40872290,chr19:40871838-40872325,chr19:40871838-40872285		chr19:40871569-40871837			87.15	78.33	79.17	95.45	89.02	100.00	98.81	99.26	97.95	98.80	98.91	98.75	98.84	99.72	97.92	99.07	98.30	98.08	80.85	86.81	93.22	86.83	88.06	87.57	86.36	94.55	91.77	96.05	95.04	93.37	90.62	88.42	82.05	89.32	89.91	88.39	84.20	92.59	8.38	0.246597	0.709176
N	jcn_only_AA	ATXN2L	chr16	+	chr16:28846721-28846866;chr16:28846721-28846869;chr16:28846721-28846933	chr16:28846721-28846875		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		0.00	0.00	3.95	0.00	0.00	NA	0.00	0.00	0.00	2.56	0.00	0.00	0.00	1.35	2.59	0.00	0.00	0.00	0.00	0.00	0.00	5.13	4.12	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.85	5.26	3.12	1.85	0.00	0.00	0.00	0.00	0.500175	0.754496
K	intron_retention	STX4	chr16	+	chr16:31045436-31045546				chr16:31045435-31045436;chr16:31045546-31045547		2.78	2.13	4.50	2.44	2.37	3.92	0.00	0.83	1.10	1.04	0.00	1.39	1.20	1.03	0.00	1.79	2.08	3.09	4.84	1.85	2.86	2.38	2.19	2.58	3.23	1.74	1.25	1.67	1.27	2.08	7.75	2.91	2.90	1.47	2.79	2.37	2.51	1.79	-0.72	0.952616	1.000000
K	intron_retention	H3F3B	chr17	-	chr17:73775045-73775127				chr17:73775044-73775045;chr17:73775127-73775128		9.67	13.70	10.94	2.93	2.54	2.92	0.00	0.22	0.32	0.00	0.00	0.06	0.15	0.20	0.40	0.31	0.17	0.00	11.75	9.98	15.24	5.75	4.90	4.61	6.50	5.78	4.69	1.21	0.92	1.03	32.32	25.57	27.74	4.48	5.04	3.29	9.12	7.72	-1.40	0.999416	1.000000
K	intron_retention	UBE2J2	chr1	-	chr1:1192511-1192587				chr1:1192510-1192511;chr1:1192587-1192588		0.00	0.00	5.26	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	4.00	2.50	0.00	0.00	0.00	5.56	1.96	0.00	0.00	2.22	1.27	0.00	0.00	0.00	0.478803	1.000000
K	intron_retention	CSF1R	chr5	-	chr5:149441159-149441285				chr5:149441158-149441159;chr5:149441285-149441286		0.58	1.72	1.09	0.00	0.72	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.29	0.00	0.00	6.52	0.69	0.00	0.74	1.36	0.00	3.08	0.00	0.50	0.00	0.00	0.00	0.00	0.00	2.00	0.60	0.62	0.00	1.86	0.00	-1.86	0.342078	1.000000
K	intron_retention		chr16	+	chr16:30780720-30780795				chr16:30780719-30780720;chr16:30780795-30780796		3.39	0.00	1.27	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.69	8.33	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	9.33	7.07	4.17	2.27	2.67	4.08	0.00	1.70	1.70	0.580274	1.000000
N	jcn_only_AA	UBE2E3	chr2	+	chr2:15769822-15770158	chr2:15769822-15770113		chr2:15770114-15770158	chr2:15770158-15770159		100.00	93.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	CALHM2	chr10	-	chr10:105207326-105209143	chr10:105207793-105209143		chr10:105207326-105207792	chr10:105207325-105207326		6.67	12.50	21.21	NA	20.00	NA	5.41	10.00	0.00	NA	10.00	NA	7.45	0.00	9.09	6.25	9.73	NA	19.23	16.67	15.00	NA	26.61	NA	19.23	18.18	26.32	18.18	26.92	NA	NA	23.08	13.33	13.33	18.97	NA	12.91	10.00	-2.91	0.549826	0.824249
K	cassette	ARPC1B	chr7	+	chr7:98972405-98983324	chr7:98972405-98974980;chr7:98975063-98983324		chr7:98974981-98975062			4.01	7.12	5.23	2.99	7.51	0.00	4.21	4.37	5.43	3.97	4.46	3.67	4.21	3.26	5.77	3.97	4.20	4.48	3.60	3.21	3.94	3.83	2.42	3.38	6.45	4.55	3.44	3.46	3.70	6.11	3.81	3.76	3.89	4.29	2.76	4.36	4.21	3.91	-0.30	0.154163	0.709176
K	intron_retention	TRAPPC5	chr19	+	chr19:7747209-7747409				chr19:7747208-7747209;chr19:7747409-7747410		96.15	96.88	95.59	100.00	95.87	95.38	95.41	95.45	91.11	92.45	93.00	90.38	94.78	97.18	89.74	92.68	92.92	93.75	95.00	96.92	96.95	97.06	98.53	95.83	96.76	93.75	93.85	95.83	94.96	100.00	100.00	95.16	94.01	96.77	92.86	94.59	95.20	96.53	1.33	0.503733	1.000000
K	intron_retention		chr10	-	chr10:75563118-75563331				chr10:75563117-75563118;chr10:75563331-75563332		5.00	0.00	4.91	0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	2.17	0.00	0.00	0.00	1.79	8.82	3.57	2.38	1.85	NA	0.00	4.65	4.35	1.89	1.56	0.00	7.58	NA	10.00	8.70	6.64	0.00	0.00	0.00	0.698657	1.000000
N	cassette	NDUFA8	chr9	-	chr9:124910557-124921905	chr9:124910557-124914523;chr9:124914688-124921905		chr9:124914524-124914687			100.00	95.52	95.45	100.00	94.12	91.67	96.30	100.00	100.00	90.38	90.00	94.12	91.95	94.29	100.00	89.74	92.00	88.89	92.45	100.00	97.56	92.11	93.75	87.88	100.00	100.00	95.24	89.47	93.75	100.00	100.00	100.00	93.62	92.73	95.38	95.52	94.57	100.00	5.43	0.026178	0.412736
K	intron_retention	SPNS1	chr16	+	chr16:28986422-28986504				chr16:28986421-28986422;chr16:28986504-28986505	chr16:28986115-28986421	91.30	100.00	96.43	NA	100.00	NA	94.29	92.00	100.00	91.30	94.00	100.00	90.67	95.83	88.24	93.51	97.87	94.44	100.00	100.00	100.00	94.12	97.37	91.67	100.00	95.24	95.24	92.86	95.56	100.00	100.00	96.15	100.00	92.31	89.58	97.30	100.00	95.53	-4.47	0.861733	1.000000
K	intron_retention	APBA3	chr19	-	chr19:3751096-3751186				chr19:3751095-3751096;chr19:3751186-3751187		0.00	5.48	4.00	0.00	0.00	4.55	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	2.08	3.45	4.11	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	3.45	1.96	0.00	0.00	0.00	2.02	0.00	-2.02	0.967360	1.000000
K	intron_retention	AP2A2	chr11	+	chr11:1000599-1003721				chr11:1000598-1000599;chr11:1003721-1003722		0.00	2.97	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.33	NA	4.65	6.06	3.57	0.00	1.72	0.00	0.00	0.00	4.88	0.00	1.64	0.00	1.49	0.00	-1.49	0.807058	1.000000
N	jcn_only_AD	CNPY2,RP11-977G19.10	chr12	-	chr12:56709027-56709690;chr12:56709027-56709604	chr12:56709027-56709661		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		4.65	9.71	1.82	0.00	0.00	4.00	0.00	0.00	4.17	0.00	0.00	5.26	3.12	0.00	0.00	3.57	0.00	6.90	0.00	2.94	4.35	0.00	4.69	4.00	0.00	0.00	3.64	0.00	4.17	0.00	2.44	4.35	0.00	0.00	0.00	7.69	0.00	1.22	1.22	0.801351	0.908253
K	intron_retention	ARFRP1	chr20	-	chr20:62332055-62333181				chr20:62332054-62332055;chr20:62333181-62333182		7.14	0.00	14.29	4.17	6.67	4.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.98	4.55	0.00	0.00	0.00	0.00	3.12	6.45	2.70	14.00	0.00	0.00	10.00	2.08	3.23	3.80	3.12	2.04	0.00	6.25	0.00	5.75	0.00	0.00	0.00	0.481888	1.000000
N	jcn_only_AA	HSF1	chr8	+	chr8:145537718-145537792;chr8:145537718-145537787;chr8:145537718-145537811	chr8:145537718-145537795		chr8:145537788-145537792;chr8:145537793-145537795;chr8:145537796-145537811	chr8:145537792-145537793;chr8:145537795-145537796;chr8:145537811-145537812		8.57	3.70	6.06	12.00	9.84	11.11	7.14	2.70	6.52	5.26	5.56	14.29	5.66	2.38	3.64	7.84	6.25	16.67	16.07	11.76	12.90	13.33	7.55	0.00	3.17	9.38	8.89	0.00	9.09	9.09	6.90	12.96	14.93	15.15	7.69	10.42	6.40	7.74	1.33	0.602873	0.815545
N	alternative_donor	SNX3	chr6	-	chr6:108544250-108582011;chr6:108544250-108582029	chr6:108544250-108581963		chr6:108581964-108582011;chr6:108582012-108582029	chr6:108582011-108582012;chr6:108582029-108582030		82.22	84.75	87.50	100.00	89.19	NA	90.94	92.65	91.14	94.59	93.20	93.30	89.60	93.07	91.36	93.64	92.45	91.61	76.47	88.07	90.00	89.06	89.61	84.21	NA	88.82	87.12	94.44	91.11	89.47	86.52	84.55	100.00	83.64	85.71	85.00	89.60	88.44	-1.16	0.962556	0.986950
K	alternative_acceptor	DNAJC21,GALNT10	chr5	+	chr5:34950448-34954030	chr5:34950448-34950548		chr5:34950549-34954030	chr5:34954030-34954031		7.14	5.26	15.79	0.00	5.00	0.00	14.29	9.09	12.24	7.14	12.50	6.25	14.81	14.29	11.94	10.42	7.89	5.00	7.14	6.67	3.70	3.70	7.89	10.00	NA	9.09	11.76	NA	8.33	NA	4.76	4.17	4.00	5.56	5.41	5.88	7.14	8.12	0.98	0.829197	0.940678
N	jcn_only_AA		chr3	+	chr3:47891045-47891166	chr3:47891045-47891119		chr3:47891120-47891166	chr3:47891166-47891167		100.00	100.00	100.00	97.44	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.64	88.89	96.83	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	83.33	90.91	100.00	100.00	100.00	100.00	100.00	94.44	-5.56	0.243351	0.663989
K	alternative_last_exon	AK6,TAF9	chr5	-	chr5:68648081-68662329;chr5:68651781-68662329	chr5:68661582-68662329	chr5:68646811-68648080;chr5:68651722-68651780	chr5:68660570-68661581			70.45	81.44	67.74	88.89	83.78	92.62	69.72	63.83	72.73	69.57	73.02	80.25	71.17	69.39	62.16	73.05	77.01	78.26	83.33	72.92	74.39	76.47	73.37	77.31	91.43	69.44	62.07	79.53	73.99	73.97	79.25	77.94	89.74	80.85	76.10	76.89	82.38	69.94	-12.44	0.043077	0.227559
K	alternative_last_exon	SLC44A1,TRMT10B	chr9	+	chr9:108147784-108147900,chr9:108147784-108200525,chr9:108147784-108200530;chr9:108147784-108200561	chr9:108147784-108152184,chr9:108147784-108151313	chr9:108200562-108201452	chr9:108152185-108159627			37.93	12.28	44.19	14.29	13.79	7.14	39.13	41.67	40.62	66.67	60.87	64.29	56.25	NA	45.45	70.00	68.75	NA	9.09	42.86	16.98	33.33	28.00	33.33	3.19	35.29	23.53	33.33	23.81	22.58	36.36	26.79	8.89	46.15	41.18	46.15	10.68	37.93	27.25	0.102222	0.323770
K	alternative_acceptor	TMBIM4	chr12	-	chr12:66531946-66532503	chr12:66531947-66532503		chr12:66531946-66531946	chr12:66531945-66531946		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	97.14	100.00	100.00	100.00	96.97	97.30	100.00	98.18	100.00	100.00	95.56	97.62	100.00	100.00	100.00	100.00	92.31	98.04	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	-1.52	0.106942	0.598353
K	intron_retention		chr1	+	chr1:16059025-16059106				chr1:16059024-16059025;chr1:16059106-16059107		13.93	23.38	18.25	11.38	10.68	6.06	3.20	4.07	5.74	1.49	2.71	2.68	3.33	5.56	6.98	4.97	3.70	2.14	15.93	18.87	13.01	14.71	13.62	10.95	11.82	10.94	11.11	8.33	9.09	7.18	24.91	18.10	21.43	12.55	13.17	8.88	13.88	12.43	-1.44	0.955065	1.000000
K	intron_retention		chr2	-	chr2:74699598-74699695				chr2:74699597-74699598;chr2:74699695-74699696		4.00	7.10	5.62	4.94	5.16	3.45	0.00	0.00	0.00	0.00	1.09	0.00	0.77	0.00	0.96	0.00	0.00	0.00	6.82	6.52	4.64	6.12	6.48	4.65	2.86	1.79	3.96	1.96	1.55	2.46	9.84	7.84	4.29	4.48	4.55	2.11	3.58	2.90	-0.68	0.998014	1.000000
K	alternative_last_exon	ASPH	chr8	-	chr8:62496589-62531536	chr8:62519882-62531536	chr8:62496503-62496588	chr8:62519020-62519881			NA	78.57	25.00	NA	100.00	NA	8.00	17.65	7.14	18.75	12.50	21.43	10.00	21.05	7.69	28.57	14.29	31.25	90.00	50.00	81.82	73.33	72.22	NA	NA	46.15	43.59	76.92	80.00	NA	NA	43.75	83.33	50.00	40.74	50.00	78.57	33.60	-44.97	0.359079	0.535374
N	alternative_acceptor	SMPD1	chr11	+	chr11:6415272-6415448;chr11:6415272-6415407	chr11:6415272-6415427		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		100.00	96.88	100.00	NA	95.83	NA	89.47	92.86	90.48	93.94	89.36	95.83	100.00	91.67	94.44	91.67	97.44	100.00	94.74	94.74	100.00	100.00	89.29	100.00	100.00	100.00	100.00	100.00	87.50	100.00	90.62	90.32	91.30	96.55	92.59	96.15	95.81	93.80	-2.01	0.868996	0.956197
N	cassette	CD72	chr9	-	chr9:35610298-35611800	chr9:35610298-35610598;chr9:35610751-35611800		chr9:35610599-35610750			77.78	44.44	NA	NA	69.23	NA	NA	85.19	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	76.47	61.54	100.00	NA	58.33	NA	68.97	63.16	NA	NA	70.00	NA	45.45	50.00	43.75	NA	NA	NA	56.70	70.47	13.77	0.270442	0.709176
K	cassette	ITGAE	chr17	-	chr17:3623697-3626981	chr17:3623697-3626581;chr17:3626678-3626981		chr17:3626582-3626677			5.88	8.82	4.76	NA	17.65	15.38	25.00	NA	36.84	33.33	41.38	50.00	10.34	NA	15.38	15.00	12.90	NA	21.43	18.18	20.69	NA	30.30	60.00	20.00	30.00	14.29	NA	11.54	NA	15.79	14.81	24.00	22.22	18.18	15.79	20.71	16.98	-3.73	0.893833	0.967641
N	jcn_only_AA	SUGP1	chr19	-	chr19:19390200-19390993	chr19:19390328-19390993		chr19:19390200-19390327	chr19:19390199-19390200		0.00	0.00	0.00	0.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	3.19	3.08	0.00	3.45	0.00	0.00	0.00	0.00	0.176535	0.663989
K	cassette	COG1	chr17	+	chr17:71203396-71204452	chr17:71203396-71203840;chr17:71203879-71204452		chr17:71203841-71203878			6.67	2.50	0.00	0.00	4.00	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	NA	8.11	0.00	7.41	0.00	0.00	0.00	3.70	0.00	0.00	0.00	10.00	0.00	16.67	4.55	2.70	0.00	0.00	4.76	2.60	3.33	0.73	0.511604	0.791208
N	alternative_acceptor		chr1	+	chr1:26607424-26607497;chr1:26607424-26607519	chr1:26607424-26607548		chr1:26607498-26607519;chr1:26607520-26607548	chr1:26607519-26607520;chr1:26607548-26607549		94.00	97.12	91.44	95.95	94.49	98.69	99.38	98.54	98.48	99.53	99.06	99.44	99.05	97.33	95.86	98.46	98.53	99.16	97.67	96.36	97.85	95.49	95.47	98.42	98.90	96.76	94.25	97.03	97.37	99.08	94.38	92.81	97.97	95.79	95.90	98.25	98.44	96.56	-1.88	0.031218	0.557523
N	jcn_only_AA	FBXW5	chr9	-	chr9:139835564-139835702	chr9:139835624-139835702		chr9:139835564-139835623	chr9:139835563-139835564		100.00	100.00	100.00	100.00	100.00	97.37	95.19	96.55	100.00	97.00	100.00	93.18	98.13	97.47	100.00	96.47	96.58	96.23	97.14	100.00	96.75	98.00	98.90	97.73	100.00	96.83	97.85	100.00	98.85	97.18	97.83	98.46	97.50	100.00	100.00	97.50	97.81	97.65	-0.16	0.904710	0.968067
K	intron_retention	TRIM22	chr11	+	chr11:5719648-5719709				chr11:5719647-5719648;chr11:5719709-5719710		92.90	96.15	100.00	92.31	95.24	92.46	100.00	94.65	95.85	100.00	100.00	100.00	90.24	96.55	94.92	95.00	100.00	94.41	100.00	95.68	100.00	100.00	100.00	94.91	95.31	93.36	100.00	95.18	95.00	95.52	94.74	91.67	100.00	94.59	100.00	94.99	98.08	94.69	-3.38	0.405842	1.000000
K	alternative_last_exon	CCNL1	chr3	-	chr3:156866367-156867075;chr3:156864397-156867075	chr3:156866379-156867075	chr3:156864297-156864396	chr3:156865342-156866378			98.04	94.08	97.97	92.48	93.66	83.57	94.12	90.00	92.86	87.50	85.71	87.50	88.00	91.67	98.11	93.88	92.59	92.50	92.13	96.02	95.45	95.78	96.99	95.04	85.86	94.05	95.68	92.62	90.59	83.33	96.76	97.37	95.94	93.49	96.67	93.35	93.10	95.03	1.93	0.212908	0.435965
N	jcn_only_AA	MGAT4B	chr5	-	chr5:179226176-179226505;chr5:179226251-179226505;chr5:179226311-179226505	chr5:179226308-179226505					1.39	0.00	5.45	8.70	4.55	NA	0.00	0.00	5.00	4.55	4.04	0.00	4.46	0.00	0.00	8.43	3.94	3.57	0.00	0.00	2.27	2.56	3.57	0.00	0.00	2.38	4.26	5.26	2.78	8.70	0.00	5.56	0.00	2.99	2.53	4.62	0.00	0.00	0.00	0.896083	0.964014
K	alternative_donor	WDR13	chrX	+	chrX:48459015-48460171	chrX:48459045-48460171		chrX:48459015-48459044	chrX:48459014-48459015		4.17	0.00	4.76	1.49	2.86	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	2.70	0.00	2.17	0.00	0.00	0.00	4.35	2.00	0.00	4.76	8.11	0.00	3.57	2.04	2.94	3.57	1.92	5.00	3.33	0.00	2.50	2.86	5.26	0.00	3.87	3.87	0.006363	0.183174
K	intron_retention		chr19	+	chr19:18679490-18679639				chr19:18679489-18679490;chr19:18679639-18679640		95.35	95.24	95.96	89.80	91.89	89.13	92.21	95.24	93.55	87.04	94.03	92.11	91.14	90.00	95.38	87.32	91.43	92.31	90.14	94.92	95.83	100.00	93.58	97.78	100.00	93.44	96.04	94.23	92.39	90.62	93.83	97.20	91.14	88.24	95.35	92.94	91.67	94.38	2.70	0.963561	1.000000
K	intron_retention		chr3	-	chr3:129286649-129288685				chr3:129286648-129286649;chr3:129288685-129288686		5.26	7.38	5.98	NA	25.00	NA	0.75	1.37	1.56	2.17	3.33	1.92	1.57	1.89	2.61	3.00	2.96	5.26	9.52	1.75	12.50	8.00	3.91	0.00	16.18	14.63	6.03	3.57	8.11	5.88	NA	3.77	7.14	4.00	2.88	0.93	7.26	1.89	-5.37	0.854191	1.000000
K	intron_retention		chr16	+	chr16:31368686-31371020				chr16:31368685-31368686;chr16:31371020-31371021		25.81	54.72	33.33	60.00	92.31	100.00	4.76	9.09	11.32	16.87	8.04	6.94	2.50	15.00	20.83	23.81	12.86	4.17	66.67	27.78	30.00	40.82	40.98	24.10	42.86	26.32	30.00	19.35	32.61	12.00	53.33	20.00	66.67	40.40	36.11	19.70	48.79	26.06	-22.73	0.618841	1.000000
K	alternative_donor	NACA	chr12	-	chr12:57118334-57119046	chr12:57118334-57118745		chr12:57118746-57119046	chr12:57119046-57119047		45.00	56.25	46.43	NA	41.67	NA	56.41	57.14	68.75	50.00	54.05	37.50	52.38	64.29	60.71	45.45	50.00	41.67	81.82	54.55	57.14	47.06	53.12	54.55	NA	NA	48.28	42.11	50.00	NA	41.67	59.09	40.00	58.82	59.26	52.94	56.25	54.55	-1.70	0.563045	0.794043
K	intron_retention	AKR1A1	chr1	+	chr1:46034902-46035562				chr1:46034901-46034902;chr1:46035562-46035563		3.75	2.28	2.70	1.04	3.74	0.57	0.00	0.00	0.00	0.00	0.35	0.00	0.32	0.00	0.00	0.00	0.00	0.00	2.56	1.12	2.05	1.85	2.43	0.77	5.00	2.56	1.52	0.67	2.54	0.00	2.94	4.71	4.56	1.63	3.48	1.76	2.42	1.84	-0.58	0.432051	1.000000
N	alternative_acceptor	NISCH	chr3	+	chr3:52512299-52512464;chr3:52512299-52512390	chr3:52512299-52512388		chr3:52512389-52512390;chr3:52512391-52512464	chr3:52512390-52512391;chr3:52512464-52512465		0.00	0.00	2.44	NA	NA	NA	2.22	0.00	0.00	NA	0.00	NA	2.38	6.25	0.00	0.00	0.00	NA	NA	0.00	NA	NA	3.33	NA	16.67	0.00	6.67	NA	9.52	NA	NA	0.00	NA	0.00	5.00	0.00	2.30	0.00	-2.30	0.374231	0.709013
K	intron_retention		chr3	-	chr3:49159804-49160136				chr3:49159803-49159804;chr3:49160136-49160137		45.00	40.43	64.29	30.77	23.68	10.00	0.00	0.00	0.00	NA	0.00	0.00	6.45	6.25	4.55	0.00	4.17	0.00	35.29	50.00	18.75	12.50	30.30	10.00	23.53	21.95	35.90	8.00	18.97	5.77	30.77	57.89	39.13	37.50	52.63	32.00	29.41	26.36	-3.05	0.965353	1.000000
N	cassette	ARHGEF40	chr14	+	chr14:21555265-21556126;chr14:21555265-21556114	chr14:21555265-21555478;chr14:21555623-21556114,chr14:21555623-21556126		chr14:21555479-21555622			92.50	100.00	89.66	NA	89.66	NA	100.00	95.00	100.00	NA	86.67	NA	100.00	100.00	NA	NA	96.15	NA	100.00	88.00	100.00	NA	93.55	NA	NA	92.59	100.00	NA	88.89	NA	83.33	100.00	100.00	NA	100.00	NA	100.00	92.55	-7.45	0.018131	0.373030
N	alternative_donor	TBCB	chr19	+	chr19:36612572-36616352;chr19:36613076-36616352;chr19:36612613-36616352	chr19:36612621-36616352		chr19:36612572-36612612;chr19:36612613-36612620;chr19:36612621-36613075	chr19:36612571-36612572;chr19:36612612-36612613;chr19:36612620-36612621		100.00	97.73	88.89	95.65	92.31	93.75	100.00	89.29	94.12	94.29	92.86	96.15	95.45	100.00	95.24	93.02	95.45	94.59	100.00	83.87	90.38	100.00	100.00	100.00	97.56	97.22	91.84	91.67	96.00	93.18	87.50	92.59	93.02	100.00	100.00	92.68	97.65	93.25	-4.39	0.204046	0.573090
K	intron_retention		chr19	+	chr19:18699888-18700288				chr19:18699887-18699888;chr19:18700288-18700289		38.46	48.55	62.50	48.78	62.22	43.42	39.39	40.00	38.89	48.84	47.17	43.24	40.58	35.71	61.90	52.94	55.32	42.31	52.84	57.89	50.00	45.45	54.74	35.00	41.59	45.83	55.56	44.74	59.30	52.63	37.50	52.00	49.36	48.28	53.12	43.48	45.07	39.23	-5.84	0.605616	1.000000
N	coord_cassette	BCAP29	chr7	+	chr7:107253878-107258772	chr7:107253878-107254098;chr7:107254178-107256705;chr7:107256835-107258772		chr7:107254099-107254177;chr7:107256706-107256834			0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	3.23	0.00	0.00	0.00	2.22	0.00	0.00	2.56	0.00	0.00	3.70	0.00	0.00	5.26	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.190972	0.643829
N	jcn_only_AD	RPL34	chr4	+	chr4:109541958-109543106;chr4:109542102-109543106;chr4:109541757-109543106	chr4:109541869-109543106		chr4:109541757-109541868;chr4:109541869-109541957;chr4:109541958-109542101	chr4:109541756-109541757;chr4:109541868-109541869;chr4:109541957-109541958		21.43	10.34	11.63	10.07	8.18	7.46	7.04	14.04	7.63	18.75	12.24	9.18	6.53	8.77	10.05	8.11	11.72	15.79	11.64	22.73	13.70	14.23	7.80	8.15	6.19	12.86	10.22	7.02	3.26	6.39	18.95	15.61	12.33	15.20	14.90	8.03	8.69	16.49	7.80	0.018883	0.329321
K	intron_retention	FES	chr15	+	chr15:91435342-91435936				chr15:91435341-91435342;chr15:91435936-91435937		12.50	10.24	10.34	5.26	11.11	5.00	0.00	0.00	0.00	0.00	3.57	NA	3.19	NA	NA	0.00	5.13	NA	8.14	13.33	7.69	8.33	6.98	NA	15.56	0.00	3.33	7.69	6.06	0.00	5.00	11.76	7.62	5.88	8.70	12.50	7.88	5.00	-2.88	0.870819	1.000000
K	alternative_first_exon	PTPN6	chr12	+	chr12:7060679-7060771;chr12:7055903-7060771	chr12:7060684-7060771	chr12:7055740-7055902	chr12:7060432-7060683			92.45	86.21	93.02	NA	87.50	NA	94.89	91.67	95.83	100.00	92.19	NA	93.33	90.20	94.12	92.04	93.46	NA	NA	94.59	100.00	93.33	93.83	NA	100.00	92.65	90.28	96.30	94.83	NA	96.15	94.12	NA	94.92	95.40	100.00	94.11	92.55	-1.56	0.837638	0.890276
N	cassette	UBE2J2	chr1	-	chr1:1192691-1209045	chr1:1192691-1198725;chr1:1198767-1209045		chr1:1198726-1198766			94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	MYO18A	chr17	-	chr17:27417945-27419872	chr17:27417945-27419360;chr17:27419475-27419872		chr17:27419361-27419474			100.00	100.00	100.00	NA	100.00	NA	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	96.88	100.00	NA	100.00	NA	100.00	93.48	90.00	100.00	96.67	100.00	100.00	100.00	0.00	0.350589	0.709176
K	intron_retention	ELL2	chr5	-	chr5:95224835-95226806				chr5:95224834-95224835;chr5:95226806-95226807		3.01	11.76	7.46	1.89	0.00	1.59	0.00	0.84	0.45	0.59	1.68	0.62	2.33	0.50	1.33	0.88	1.53	0.00	NA	3.36	0.00	4.40	7.87	6.80	0.00	3.16	4.15	0.78	1.10	1.28	0.00	5.96	0.00	6.57	7.63	6.52	0.00	1.92	1.92	0.681072	1.000000
N	alternative_donor	TTYH3	chr7	+	chr7:2689623-2691820	chr7:2691226-2691820		chr7:2689623-2691225	chr7:2689622-2689623		3.33	15.38	3.97	NA	0.00	NA	0.21	0.44	0.00	0.00	0.15	0.00	0.31	0.56	1.56	0.30	0.16	0.00	7.69	2.17	0.00	1.14	1.72	1.05	12.82	3.70	2.63	0.80	1.74	0.00	3.51	4.11	14.29	3.07	2.54	1.95	10.26	2.75	-7.51	0.079708	0.470724
K	intron_retention	HDAC10,MAPK12	chr22	-	chr22:50686575-50686653				chr22:50686574-50686575;chr22:50686653-50686654		5.00	1.89	11.11	0.00	8.70	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	14.29	0.00	5.26	0.00	8.33	6.25	3.45	NA	9.09	0.00	4.84	10.53	17.86	10.00	12.90	6.25	10.00	10.26	7.69	0.00	11.76	6.90	3.36	5.62	2.26	0.935476	1.000000
N	cassette	UQCRH	chr1	+	chr1:46769493-46775826	chr1:46769493-46774772;chr1:46774800-46775826		chr1:46774773-46774799			98.68	97.43	98.02	98.66	99.13	98.43	98.29	100.00	98.00	98.90	99.20	99.16	98.93	98.08	98.11	98.78	99.23	98.81	98.92	98.61	98.86	99.22	98.71	99.30	91.75	84.21	88.13	94.95	93.63	94.31	98.69	98.63	99.21	99.24	99.08	99.22	98.61	98.65	0.04	0.711448	0.896308
K	alternative_first_exon	LAMTOR4	chr7	+	chr7:99746657-99747121;chr7:99746599-99747121	chr7:99746677-99747121	chr7:99746530-99746598	chr7:99746601-99746676			0.00	2.29	7.14	0.00	1.68	1.28	1.33	5.71	11.76	1.89	1.40	0.00	2.67	12.50	12.12	1.22	2.36	0.00	4.22	12.50	8.13	0.00	2.08	0.00	4.98	15.79	12.00	1.56	3.27	0.89	17.65	7.69	3.95	1.89	0.00	0.00	3.31	12.50	9.19	0.039633	0.151012
K	intron_retention	SYVN1	chr11	-	chr11:64895961-64896034				chr11:64895960-64895961;chr11:64896034-64896035		18.52	9.52	14.29	9.09	4.76	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	30.00	11.11	15.38	0.00	NA	0.00	15.15	5.56	15.00	NA	23.53	20.41	16.67	11.54	15.62	7.89	4.76	3.33	-1.42	0.897945	1.000000
K	intron_retention	RPL28	chr19	+	chr19:55898043-55899297				chr19:55898042-55898043;chr19:55899297-55899298		100.00	100.00	95.92	100.00	100.00	100.00	90.08	100.00	100.00	89.90	94.12	92.66	91.97	93.04	93.37	88.24	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	95.58	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.79	100.00	2.21	0.663486	1.000000
K	intron_retention	FLII	chr17	-	chr17:18148975-18149057				chr17:18148974-18148975;chr17:18149057-18149058		3.97	11.96	6.57	7.03	11.17	6.25	0.61	0.00	0.00	0.80	0.00	0.00	1.65	0.73	2.38	1.06	0.76	1.01	7.35	6.80	4.60	7.84	11.11	8.84	11.88	3.43	7.89	6.10	8.13	5.98	6.29	7.38	5.49	4.43	6.45	5.51	6.42	3.70	-2.72	0.585485	1.000000
K	alternative_acceptor	TBC1D2	chr9	-	chr9:100962624-100963760	chr9:100962657-100963760		chr9:100962624-100962656	chr9:100962623-100962624		91.67	88.89	95.65	92.00	98.33	NA	100.00	96.30	92.31	100.00	100.00	NA	100.00	100.00	NA	96.15	100.00	NA	96.30	96.97	95.12	100.00	96.81	NA	100.00	100.00	97.22	96.88	99.00	100.00	94.67	92.50	95.74	97.62	95.56	100.00	98.15	96.63	-1.52	0.922713	0.978996
K	coord_cassette	KLC1	chr14	+	chr14:104145856-104166991	chr14:104145856-104153417;chr14:104153549-104158695;chr14:104158763-104166991		chr14:104153418-104153548;chr14:104158696-104158762			56.25	31.03	45.00	35.71	38.89	13.04	NA	NA	36.36	NA	NA	NA	27.78	45.45	NA	40.00	35.71	NA	36.00	60.00	25.00	NA	35.71	54.55	11.11	40.00	44.44	40.00	31.25	40.00	47.62	36.84	31.03	72.73	61.54	53.33	31.03	47.62	16.59	0.004153	0.445775
K	alternative_first_exon	RPS10-NUDT3	chr6	-	chr6:34309750-34310740,chr6:34309750-34338037,chr6:34309750-34359583,chr6:34309750-34359587;chr6:34309750-34386145	chr6:34309750-34360040	chr6:34386146-34386201	chr6:34360041-34360451			90.48	100.00	96.43	NA	100.00	NA	96.77	84.71	100.00	100.00	100.00	100.00	98.55	87.10	100.00	100.00	97.26	100.00	100.00	91.18	100.00	100.00	94.44	100.00	100.00	77.78	84.62	100.00	100.00	100.00	86.96	91.30	100.00	100.00	90.00	100.00	100.00	87.03	-12.97	0.000904	0.016459
K	jcn_only_AD	YBX3	chr12	-	chr12:10854734-10854857;chr12:10854734-10855010;chr12:10854734-10856649	chr12:10854734-10856658		chr12:10854858-10855010;chr12:10855011-10856649;chr12:10856650-10856658	chr12:10855010-10855011;chr12:10856649-10856650;chr12:10856658-10856659		0.00	0.00	6.77	6.00	6.25	11.76	4.65	5.45	5.48	6.76	3.57	7.88	5.66	7.58	6.21	5.60	5.11	4.85	4.35	8.33	8.85	5.68	6.17	7.56	0.00	2.70	6.29	7.38	2.60	7.52	11.76	5.43	4.00	8.79	7.55	6.29	4.17	6.52	2.34	0.188251	0.657607
N	alternative_acceptor	LYL1	chr19	-	chr19:13212010-13213344;chr19:13211863-13213344	chr19:13213253-13213344		chr19:13211863-13212009;chr19:13212010-13213252	chr19:13211862-13211863;chr19:13212009-13212010		9.09	10.67	13.33	NA	6.38	NA	2.27	NA	NA	NA	2.86	NA	2.44	0.00	NA	NA	2.86	NA	8.57	15.38	9.09	NA	9.80	NA	6.98	10.00	7.14	NA	4.88	NA	NA	6.67	8.89	NA	9.09	NA	7.78	9.54	1.77	0.599932	0.847140
N	alternative_donor	MYO1F	chr19	-	chr19:1578158-1578337	chr19:1578158-1578333		chr19:1578334-1578337	chr19:1578337-1578338		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	94.29	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.15	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	jcn_only_AD	VMO1	chr17	-	chr17:4688955-4689251;chr17:4688955-4689265;chr17:4688955-4710221;chr17:4688955-4689231	chr17:4688955-4689195		chr17:4689196-4689231;chr17:4689232-4689251;chr17:4689252-4689265;chr17:4689266-4710221	chr17:4689231-4689232;chr17:4689251-4689252;chr17:4689265-4689266;chr17:4710221-4710222		11.27	4.77	7.14	2.72	6.50	4.69	18.82	23.53	14.29	20.00	30.95	17.95	10.81	11.54	NA	30.00	26.67	30.00	30.19	35.63	36.11	NA	26.67	NA	46.70	39.29	43.75	20.00	45.95	27.27	1.51	1.49	0.67	0.00	0.98	0.00	14.82	17.54	2.72	0.850913	0.928405
N	cassette	DNM2	chr19	+	chr19:10906116-10909161;chr19:10906876-10909161	chr19:10906116-10908055,chr19:10906876-10908055;chr19:10908195-10909161		chr19:10908056-10908194			19.76	10.81	16.67	NA	27.78	NA	25.40	24.63	20.48	35.62	37.86	36.36	29.86	25.89	14.13	37.97	26.00	33.33	NA	17.89	21.74	22.00	18.27	13.24	29.41	15.89	14.29	30.23	31.67	25.00	11.11	12.15	12.50	14.56	14.66	17.17	25.40	18.83	-6.57	0.627999	0.864183
N	alternative_acceptor	STAB1	chr3	+	chr3:52553581-52553928;chr3:52553581-52553793;chr3:52553581-52554026;chr3:52553581-52553959	chr3:52553581-52553796		chr3:52553794-52553796;chr3:52553797-52553928;chr3:52553929-52553959;chr3:52553960-52554026	chr3:52553796-52553797;chr3:52553928-52553929;chr3:52553959-52553960;chr3:52554026-52554027		1.20	0.66	1.01	0.00	0.79	0.00	0.26	0.00	0.00	0.00	0.22	0.00	0.47	0.00	0.00	0.00	0.26	0.00	0.93	3.16	5.26	0.00	0.81	0.00	0.71	0.00	1.95	0.00	0.56	0.00	0.00	0.00	1.04	0.30	0.78	0.00	0.69	0.00	-0.69	0.931549	0.980313
N	alternative_donor	IFI16	chr1	+	chr1:159021880-159024610;chr1:159023417-159024610;chr1:159023515-159024610;chr1:159023494-159024610	chr1:159023988-159024610		chr1:159021880-159023416;chr1:159023417-159023493;chr1:159023494-159023514;chr1:159023515-159023987	chr1:159021879-159021880;chr1:159023416-159023417;chr1:159023493-159023494;chr1:159023514-159023515		5.36	2.50	4.88	0.00	0.00	8.00	0.00	5.88	5.00	0.00	0.00	NA	0.00	6.67	6.25	0.00	0.00	NA	0.00	5.26	5.13	5.26	5.26	3.23	0.00	6.35	4.41	2.27	0.00	1.79	6.90	4.44	0.00	6.67	0.00	6.25	0.00	6.12	6.12	0.000002	0.001267
K	jcn_only_AD	SH3BP2	chr4	+	chr4:2826458-2826852	chr4:2826487-2826852		chr4:2826458-2826486	chr4:2826457-2826458		0.00	0.00	0.00	NA	0.00	NA	1.20	0.00	0.00	2.13	1.52	2.50	2.50	0.00	0.00	1.05	1.87	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.27	0.00	0.00	0.00	0.211181	0.657607
N	coord_cassette	MRPL33	chr2	+	chr2:27994667-28002299	chr2:27994667-27995540;chr2:27995560-27997290;chr2:27997398-28002299		chr2:27995541-27995559;chr2:27997291-27997397			89.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention		chr14	-	chr14:24683602-24683697				chr14:24683601-24683602;chr14:24683697-24683698		0.00	3.03	5.41	6.25	2.17	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.77	6.67	2.50	NA	6.45	NA	14.29	0.00	4.88	0.00	3.70	NA	5.88	12.00	4.26	0.00	5.56	0.00	3.40	0.00	-3.40	0.649511	1.000000
K	intron_retention	MED25	chr19	+	chr19:50335415-50335564				chr19:50335414-50335415;chr19:50335564-50335565		3.70	13.51	12.00	NA	14.29	8.33	0.00	0.90	0.00	0.00	0.00	0.00	1.85	1.69	0.00	0.00	1.92	1.85	9.09	10.00	4.88	NA	8.70	0.00	17.65	6.17	10.87	14.29	3.70	5.77	4.26	8.33	15.79	7.14	9.09	6.06	11.30	3.98	-7.32	0.765421	1.000000
K	intron_retention	SSB	chr2	+	chr2:170663403-170663480				chr2:170663402-170663403;chr2:170663480-170663481		4.89	0.00	7.14	0.00	0.00	NA	0.00	0.00	0.74	0.00	0.00	0.53	0.00	0.37	2.10	0.81	0.00	0.41	NA	1.85	0.00	5.45	5.26	5.49	NA	1.94	3.08	3.41	2.90	2.82	3.23	5.88	0.00	7.14	1.12	3.92	0.00	1.90	1.90	0.083444	1.000000
N	jcn_only_AA	CTSL	chr9	+	chr9:90341169-90342275;chr9:90341169-90342508;chr9:90341169-90342589;chr9:90341169-90342941	chr9:90341169-90342948					1.07	0.00	0.00	0.00	2.92	17.39	0.00	1.29	1.85	3.24	0.00	0.00	2.63	1.27	1.35	0.00	2.28	0.00	0.00	3.61	0.00	0.00	0.00	3.81	0.00	1.50	1.48	3.77	4.15	5.20	0.00	0.00	0.00	3.16	2.39	3.45	0.00	1.28	1.28	0.149424	0.663989
N	cassette	SUSD1	chr9	-	chr9:114804241-114820707;chr9:114804446-114820707;chr9:114804241-114825216	chr9:114804241-114814678,chr9:114804446-114814678;chr9:114814719-114820707,chr9:114814719-114825216		chr9:114814679-114814718			84.38	87.88	100.00	NA	88.00	90.00	87.80	90.00	95.65	100.00	90.00	90.48	93.48	93.88	91.30	92.86	93.94	100.00	90.32	85.71	89.47	100.00	89.83	95.24	93.33	93.44	91.18	96.67	92.86	93.33	96.15	92.00	100.00	84.62	92.00	95.00	91.82	91.72	-0.10	0.579921	0.837494
K	jcn_only_AD	ARHGDIB	chr12	-	chr12:15100884-15102735	chr12:15100884-15101733		chr12:15101734-15102735	chr12:15102735-15102736		1.47	0.00	1.65	0.00	0.91	1.56	0.25	2.13	8.70	0.41	0.38	0.41	0.13	2.43	7.14	0.31	0.21	0.22	0.00	1.61	1.30	0.84	0.84	0.65	0.00	4.83	2.48	1.17	0.55	0.00	4.17	1.63	0.34	0.55	1.39	0.37	0.07	2.28	2.22	0.005403	0.182851
N	cassette	DGKZ	chr11	+	chr11:46400787-46401380	chr11:46400787-46401003;chr11:46401119-46401380		chr11:46401004-46401118			100.00	98.89	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	97.56	97.70	100.00	94.74	100.00	100.00	100.00	0.00	0.205715	0.709176
N	jcn_only_AD		chr14	-	chr14:23547476-23547573;chr14:23547476-23548142	chr14:23547476-23548028		chr14:23547574-23548028;chr14:23548029-23548142	chr14:23548028-23548029;chr14:23548142-23548143		100.00	100.00	96.70	NA	NA	NA	100.00	97.73	97.44	100.00	100.00	NA	96.61	100.00	100.00	100.00	100.00	100.00	NA	93.18	NA	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.87	100.00	95.65	100.00	100.00	0.00	0.648035	0.818639
K	intron_retention	SLC38A10	chr17	-	chr17:79220862-79225292				chr17:79220861-79220862;chr17:79225292-79225293		26.47	31.58	24.14	NA	33.33	NA	8.11	18.18	3.70	15.79	8.33	18.18	9.52	18.18	12.12	26.32	9.38	21.43	41.67	20.00	25.00	NA	22.58	NA	25.00	20.00	22.73	NA	36.84	NA	15.38	10.34	35.29	21.43	27.27	43.75	28.29	19.09	-9.20	0.766235	1.000000
K	intron_retention	SPAG7	chr17	-	chr17:4862939-4863054				chr17:4862938-4862939;chr17:4863054-4863055		6.35	7.52	7.22	8.43	6.25	6.36	1.30	1.82	2.56	3.12	3.70	1.85	4.88	2.99	4.20	1.90	3.06	0.00	11.11	6.12	4.41	5.48	7.75	8.45	4.11	0.00	7.59	7.25	6.03	6.41	4.26	9.59	6.45	5.33	7.14	5.56	5.67	3.62	-2.04	0.995964	1.000000
N	alternative_donor	CLMN	chr14	-	chr14:95660257-95660568;chr14:95660257-95660868;chr14:95660257-95660551	chr14:95660257-95660872		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		78.79	75.00	71.43	100.00	92.31	100.00	NA	100.00	100.00	NA	100.00	NA	NA	100.00	NA	NA	NA	NA	97.78	87.50	93.44	NA	88.24	NA	100.00	75.00	84.38	NA	90.91	100.00	75.00	85.71	90.91	78.57	81.25	76.47	94.34	83.15	-11.20	0.532212	0.776719
N	alternative_acceptor	FNBP1	chr9	-	chr9:132652826-132658116;chr9:132654367-132658116	chr9:132655518-132658116		chr9:132652826-132654366;chr9:132654367-132655517	chr9:132652825-132652826;chr9:132654366-132654367		45.00	65.22	22.58	NA	NA	54.55	9.09	31.82	13.04	11.11	13.64	19.51	10.96	17.24	9.33	7.50	13.79	18.18	61.54	33.33	NA	NA	26.67	21.05	NA	38.89	25.93	NA	27.27	NA	NA	40.00	NA	25.00	25.00	20.83	36.25	33.33	-2.92	0.842281	0.943976
N	alternative_acceptor	AP1B1	chr22	-	chr22:29727906-29730253;chr22:29728044-29730253;chr22:29729534-29730253	chr22:29727875-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		4.00	0.00	0.00	0.00	2.53	NA	0.00	0.00	0.00	0.00	1.51	0.00	0.00	1.69	3.77	0.00	0.91	0.00	2.56	0.00	0.00	0.00	1.64	2.00	5.26	0.00	3.64	3.33	1.23	0.00	0.00	3.77	0.00	0.00	1.74	2.11	0.00	0.00	0.00	0.757855	0.910949
K	intron_retention	FES	chr15	+	chr15:91437042-91437165				chr15:91437041-91437042;chr15:91437165-91437166		1.33	3.12	5.41	0.00	3.76	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.46	0.00	1.89	0.00	1.52	0.00	2.14	0.00	0.00	0.00	0.00	0.00	3.45	4.08	2.41	0.00	0.00	0.00	2.28	0.00	-2.28	0.974369	1.000000
K	cassette	NFKBID	chr19	-	chr19:36381393-36386881	chr19:36381393-36381479;chr19:36381599-36386881		chr19:36381480-36381598			2.90	0.00	1.33	4.17	1.41	NA	NA	NA	NA	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	3.51	7.14	1.92	1.49	0.00	5.26	6.82	5.88	0.00	0.00	NA	6.52	3.57	0.00	3.88	1.63	4.17	0.00	5.01	5.01	0.074584	0.640086
K	intron_retention	WDR83	chr19	+	chr19:12783931-12784015				chr19:12783930-12783931;chr19:12784015-12784016		0.00	6.67	2.56	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	5.26	7.14	2.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	9.09	5.26	5.17	5.00	0.00	0.00	2.58	3.57	0.98	0.971322	1.000000
K	cassette	SNAPIN	chr1	+	chr1:153631363-153631923	chr1:153631363-153631613;chr1:153631661-153631923		chr1:153631614-153631660			84.21	66.67	77.50	NA	100.00	NA	94.29	100.00	96.08	95.45	94.20	100.00	98.28	98.11	93.44	100.00	97.37	100.00	NA	86.21	100.00	95.65	77.27	95.83	NA	91.43	86.36	90.00	92.86	100.00	76.19	82.76	81.82	100.00	93.10	93.75	88.06	88.82	0.76	0.632879	0.867338
K	intron_retention		chr14	-	chr14:24029060-24029146				chr14:24029059-24029060;chr14:24029146-24029147		5.41	3.75	20.45	11.11	0.00	3.70	0.00	6.25	0.00	0.00	9.09	0.00	9.52	3.33	1.82	NA	6.67	NA	2.13	6.45	1.49	NA	13.79	NA	4.60	2.33	4.26	0.00	12.90	5.26	2.56	8.20	4.55	18.75	14.81	26.32	4.15	4.37	0.22	0.860951	1.000000
K	intron_retention	NSUN5	chr7	-	chr7:72721755-72722427				chr7:72721754-72721755;chr7:72722427-72722428		7.14	26.67	16.00	NA	16.67	NA	0.00	0.00	0.00	NA	9.52	NA	2.94	0.00	0.00	0.00	0.00	NA	0.00	15.00	7.69	NA	23.53	NA	NA	0.00	20.00	NA	0.00	NA	15.00	26.09	NA	NA	NA	28.57	1.47	3.57	2.10	0.865067	1.000000
N	jcn_only_AA	ARHGEF2	chr1	-	chr1:155921322-155921531;chr1:155921374-155921531	chr1:155921325-155921531		chr1:155921322-155921324;chr1:155921325-155921373	chr1:155921321-155921322;chr1:155921324-155921325		100.00	88.89	100.00	100.00	100.00	NA	98.65	99.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.48	100.00	98.95	98.95	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.70	98.19	100.00	98.31	100.00	99.49	99.33	99.73	0.40	0.441027	0.706196
K	intron_retention	DDX56	chr7	-	chr7:44609503-44609613				chr7:44609502-44609503;chr7:44609613-44609614		10.34	7.89	6.52	10.00	11.76	6.25	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.45	0.00	0.00	12.50	4.55	5.45	12.50	7.81	15.00	0.00	7.14	5.88	5.13	10.42	6.06	8.82	12.50	9.26	14.71	7.32	10.77	3.94	7.98	4.04	0.452363	1.000000
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48664489-48665378;chr3:48664486-48665378	chr3:48664541-48665378		chr3:48664486-48664488;chr3:48664489-48664540	chr3:48664485-48664486;chr3:48664488-48664489		13.95	9.30	12.05	NA	12.90	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	5.00	NA	0.00	NA	18.18	12.00	10.53	NA	10.34	NA	31.25	15.00	15.87	NA	12.50	NA	15.15	14.61	9.68	14.29	9.09	5.88	9.49	14.47	4.98	0.615067	0.853734
K	intron_retention	TMEM198B	chr12	+	chr12:56229400-56229909				chr12:56229399-56229400;chr12:56229909-56229910		94.74	87.50	100.00	96.81	82.76	96.00	90.00	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	85.00	100.00	95.00	100.00	93.02	96.30	90.77	100.00	90.91	100.00	95.35	93.94	93.94	100.00	76.92	98.18	100.00	93.33	87.50	97.37	9.87	0.051952	1.000000
N	cassette	STAB1	chr3	+	chr3:52546975-52547732;chr3:52546660-52547732	chr3:52546975-52547145,chr3:52546660-52547145;chr3:52547258-52547732		chr3:52547146-52547257			100.00	93.75	100.00	NA	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	98.41	NA	95.35	95.81	95.85	95.14	100.00	97.78	100.00	99.37	100.00	100.00	100.00	98.31	94.23	96.63	96.73	98.38	100.00	1.62	0.102723	0.683336
K	intron_retention	IRF9,RP11-468E2.4	chr14	+	chr14:24634165-24635055				chr14:24634164-24634165;chr14:24635055-24635056		16.56	15.49	22.96	12.28	14.29	7.69	0.00	2.63	1.55	4.55	3.23	3.39	5.56	1.43	4.09	3.65	5.00	3.00	6.67	21.10	14.29	18.97	9.26	19.81	12.90	13.61	14.49	11.11	13.04	9.52	17.89	17.01	14.29	22.34	21.28	18.40	9.79	15.08	5.30	0.996178	1.000000
K	jcn_only_AA	SRSF5	chr14	+	chr14:70237823-70237913	chr14:70237823-70237910		chr14:70237911-70237913	chr14:70237913-70237914		88.42	77.38	86.55	91.30	89.22	86.96	87.69	88.06	86.54	88.41	91.26	88.37	86.52	85.71	87.50	90.37	89.73	89.69	89.39	84.31	79.27	86.46	85.16	88.00	67.86	89.00	89.15	87.07	92.62	89.58	80.91	86.22	83.33	91.51	90.00	90.30	84.92	86.88	1.96	0.295970	0.663989
N	alternative_acceptor	TAPBP	chr6	-	chr6:33271767-33271904	chr6:33271798-33271904		chr6:33271767-33271797	chr6:33271766-33271767		5.81	0.00	6.25	0.00	4.76	0.00	0.00	0.46	0.33	0.68	0.84	0.64	0.00	0.51	1.69	0.00	0.88	0.00	0.00	4.17	1.33	4.76	5.13	4.84	0.00	1.64	2.17	3.23	3.12	1.59	7.25	5.93	0.00	6.12	5.17	8.40	0.00	2.90	2.90	0.037133	0.560254
K	intron_retention		chr17	+	chr17:4618339-4619267				chr17:4618338-4618339;chr17:4619267-4619268		13.51	44.44	24.77	NA	15.62	NA	1.92	1.71	1.03	0.00	1.82	0.00	3.96	2.08	5.07	0.00	2.73	0.00	NA	8.82	6.25	NA	16.67	NA	33.33	9.00	16.83	13.04	10.00	0.00	3.45	19.35	18.18	31.82	26.92	17.65	18.18	6.13	-12.04	0.285266	1.000000
K	alternative_acceptor	BABAM1,CTD-2278I10.6	chr19	+	chr19:17378337-17379602;chr19:17378337-17379564	chr19:17378337-17379610		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		0.00	0.00	0.00	NA	9.09	NA	2.27	0.00	7.69	0.00	2.56	0.00	0.00	0.00	0.00	4.00	4.35	0.00	NA	7.69	0.00	NA	9.09	NA	NA	0.00	4.17	0.00	0.00	0.00	10.00	8.33	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.273699	0.709013
N	alternative_donor	TM4SF19,TM4SF19-TCTEX1D2	chr3	-	chr3:196050869-196051141;chr3:196050869-196051311	chr3:196050869-196051145		chr3:196051142-196051145;chr3:196051146-196051311	chr3:196051145-196051146;chr3:196051311-196051312		9.09	0.00	NA	16.28	8.00	14.29	8.28	7.50	11.54	13.29	11.18	13.37	6.67	NA	NA	14.02	13.16	18.42	12.50	16.67	11.62	13.68	9.09	15.22	14.29	23.53	NA	12.09	10.53	12.12	7.41	20.00	14.89	14.16	14.06	10.17	10.39	9.09	-1.30	0.412479	0.675004
K	alternative_acceptor	SRA1	chr5	-	chr5:139936858-139937012	chr5:139936918-139937012		chr5:139936858-139936917	chr5:139936857-139936858		8.33	5.62	7.58	5.88	5.10	10.00	10.00	9.52	21.43	4.55	7.89	0.00	6.25	9.09	14.29	4.55	10.00	0.00	2.63	6.45	5.45	5.56	3.92	4.55	6.25	11.54	8.33	7.69	3.70	0.00	6.98	10.94	6.00	10.00	3.61	4.55	6.12	8.71	2.59	0.066488	0.584083
N	jcn_only_AA		chr19	+	chr19:4491833-4493702	chr19:4491833-4493699		chr19:4493700-4493702	chr19:4493702-4493703		96.30	100.00	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.48	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	83.33	100.00	100.00	100.00	100.00	100.00	0.00	0.478841	0.738379
N	cassette	RAB34	chr17	-	chr17:27042920-27043920;chr17:27042920-27044230	chr17:27042920-27043010;chr17:27043080-27043920,chr17:27043080-27044230		chr17:27043011-27043079			76.92	66.67	82.22	NA	80.00	NA	100.00	90.48	95.00	NA	94.44	NA	88.89	100.00	94.12	100.00	86.67	NA	63.64	80.00	88.00	NA	80.77	NA	100.00	100.00	90.11	NA	88.89	NA	78.26	80.88	63.64	NA	86.67	85.71	77.78	85.24	7.46	0.424738	0.732911
N	alternative_acceptor	LRCH4,RP11-44M6.7	chr7	-	chr7:100176089-100176272	chr7:100176135-100176272		chr7:100176089-100176134	chr7:100176088-100176089		78.43	92.50	90.38	NA	91.67	NA	100.00	97.44	100.00	90.00	93.75	100.00	90.48	93.18	91.67	100.00	93.33	NA	NA	81.82	100.00	NA	92.31	NA	100.00	92.45	90.24	72.73	92.86	NA	73.08	90.48	88.89	100.00	100.00	91.30	92.50	87.13	-5.37	0.108493	0.600043
K	intron_retention		chr1	-	chr1:203149781-203150289				chr1:203149780-203149781;chr1:203150289-203150290		6.70	2.63	1.75	3.33	0.00	NA	0.33	0.46	0.08	1.16	0.88	0.79	0.00	0.00	0.00	2.08	0.00	0.00	0.00	4.17	2.08	8.62	2.82	13.98	0.00	2.60	2.54	5.97	5.63	8.43	2.93	1.64	0.94	3.70	4.23	8.52	0.17	2.77	2.60	0.700224	1.000000
N	alternative_donor	CAMKK2,NCOR2	chr12	-	chr12:124821727-124824551	chr12:124821727-124824542		chr12:124824543-124824551	chr12:124824551-124824552		3.70	0.00	6.67	NA	6.67	NA	1.79	0.00	0.00	3.42	1.64	4.55	4.48	0.00	0.00	2.91	3.08	1.59	NA	0.00	NA	0.00	3.08	0.00	0.00	6.67	3.33	4.55	3.17	5.00	NA	10.00	NA	6.06	4.55	2.63	0.90	0.00	-0.90	0.776860	0.917161
K	jcn_only_AA	TEP1	chr14	-	chr14:20837714-20837832	chr14:20837736-20837832		chr14:20837714-20837735	chr14:20837713-20837714		90.70	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	90.32	93.94	100.00	93.10	88.89	100.00	93.62	96.77	100.00	100.00	100.00	95.92	95.74	93.55	96.55	94.74	94.44	100.00	94.77	-5.23	0.213603	0.663989
K	intron_retention		chr8	-	chr8:22884802-22885234				chr8:22884801-22884802;chr8:22885234-22885235		13.33	10.00	3.37	NA	NA	0.00	2.56	0.00	0.00	1.79	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	NA	7.41	0.00	12.00	3.57	5.26	0.00	0.00	4.00	0.00	10.00	0.00	15.79	8.16	7.69	4.62	9.43	3.70	2.56	3.71	1.15	0.626825	1.000000
N	alternative_acceptor	NUDT3,RPS10-NUDT3	chr6	-	chr6:34256709-34261227	chr6:34260312-34261227		chr6:34256709-34260311	chr6:34256708-34256709		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	intron_retention		chr16	+	chr16:31368686-31368816				chr16:31368685-31368686;chr16:31368816-31368817		94.44	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	91.94	95.74	90.91	91.67	83.33	NA	88.71	90.91	77.78	100.00	93.75	100.00	96.97	100.00	89.29	100.00	100.00	NA	86.36	91.30	75.00	100.00	NA	100.00	93.88	100.00	91.43	100.00	97.22	-2.78	0.261504	1.000000
K	intron_retention	YWHAZ	chr8	-	chr8:101931458-101932817				chr8:101931457-101931458;chr8:101932817-101932818		93.56	85.25	93.47	88.89	89.18	92.59	92.49	91.69	88.72	90.10	88.63	87.50	89.22	92.41	91.57	92.05	91.01	89.82	76.09	79.53	77.34	86.75	87.66	83.86	100.00	90.65	91.75	87.99	87.46	87.14	83.26	81.93	89.74	92.75	89.50	91.35	89.48	91.17	1.69	0.724975	1.000000
K	alternative_last_exon	SRSF10	chr1	-	chr1:24294214-24298062,chr1:24294447-24298062	chr1:24297930-24298062	chr1:24293797-24294213	chr1:24295573-24297929			60.53	48.28	52.17	56.00	58.62	41.67	42.31	35.48	43.14	43.01	42.03	42.86	40.85	35.71	41.79	44.95	47.30	43.75	45.83	47.22	50.00	42.86	42.31	43.59	50.00	43.33	44.44	40.00	45.24	50.00	53.85	48.15	50.00	47.89	43.28	49.28	47.05	45.27	-1.78	0.966392	0.976896
K	intron_retention		chr15	-	chr15:89862582-89863996				chr15:89862581-89862582;chr15:89863996-89863997		11.11	18.92	10.00	0.00	13.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	3.03	0.00	0.00	0.00	NA	12.50	0.00	14.29	15.15	16.13	0.00	11.11	3.33	9.09	5.26	10.53	0.00	23.08	NA	16.13	14.81	4.17	0.94	5.55	4.61	0.958394	1.000000
K	intron_retention	PLCB3	chr11	+	chr11:64029549-64029878				chr11:64029548-64029549;chr11:64029878-64029879		11.76	8.00	13.56	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	15.00	0.00	9.09	5.56	NA	11.76	11.76	8.51	0.00	0.00	NA	8.33	18.92	NA	4.00	5.56	6.25	4.00	10.04	6.04	0.614557	1.000000
K	intron_retention	ATP13A1	chr19	-	chr19:19764704-19764777				chr19:19764703-19764704;chr19:19764777-19764778		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	NA	5.13	0.00	9.09	5.88	3.70	0.00	0.00	0.00	0.00	0.00	0.00	10.34	10.00	0.00	4.55	0.00	4.55	0.00	0.00	0.00	0.341309	1.000000
N	alternative_acceptor	C17orf62	chr17	-	chr17:80402001-80402322;chr17:80401843-80402322;chr17:80401382-80402322;chr17:80401503-80402322	chr17:80401699-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		6.83	3.37	2.67	0.00	6.45	6.67	4.17	2.68	3.29	4.17	6.52	0.00	5.13	3.51	2.50	0.00	0.00	0.00	1.69	3.30	6.93	0.00	6.25	0.00	0.00	4.00	3.64	2.86	4.08	3.39	2.99	2.80	5.00	0.00	2.50	0.00	3.77	3.40	-0.37	0.538497	0.819904
K	intron_retention		chr1	-	chr1:1684500-1685005				chr1:1684499-1684500;chr1:1685005-1685006		5.71	11.63	10.98	8.00	6.45	4.85	0.00	0.58	0.94	0.00	0.00	0.00	0.74	1.40	2.37	0.00	0.00	0.00	4.17	4.98	3.03	12.12	10.71	7.79	10.14	4.53	10.53	5.45	6.06	4.41	5.58	6.47	7.41	7.84	8.70	4.12	5.79	4.76	-1.03	0.954105	1.000000
K	intron_retention	ZNF335	chr20	-	chr20:44578038-44578123				chr20:44578037-44578038;chr20:44578123-44578124		3.33	11.90	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	2.70	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	2.38	7.14	0.00	2.86	1.19	0.00	-1.19	0.474273	1.000000
K	intron_retention	HMHA1	chr19	+	chr19:1067495-1068412				chr19:1067494-1067495;chr19:1068412-1068413		0.00	13.33	7.14	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	3.70	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.70	0.00	-0.70	0.629122	1.000000
K	intron_retention	GAK	chr4	-	chr4:887798-890247				chr4:887797-887798;chr4:890247-890248		0.00	9.09	5.45	NA	NA	NA	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	3.23	6.45	13.33	5.45	4.65	9.52	6.25	NA	0.00	5.41	NA	7.46	5.56	10.53	4.54	0.00	-4.54	0.511264	1.000000
K	intron_retention	COA5	chr2	-	chr2:99220655-99224769				chr2:99220654-99220655;chr2:99224769-99224770		0.00	13.33	12.50	NA	0.00	0.00	2.86	0.00	0.00	0.00	7.69	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	11.76	0.00	NA	7.69	9.09	12.50	13.33	6.90	NA	5.26	0.00	0.00	2.94	5.26	18.18	5.26	0.00	4.06	0.00	-4.06	0.805414	1.000000
K	jcn_only_AD	PPP1R7	chr2	+	chr2:242097947-242098627	chr2:242097965-242098627		chr2:242097947-242097964	chr2:242097946-242097947		100.00	93.65	91.36	100.00	98.18	100.00	97.73	97.14	96.00	90.91	96.61	90.62	95.83	97.14	97.44	94.44	90.70	94.12	100.00	95.83	93.85	85.71	96.00	94.12	100.00	95.00	96.49	95.24	96.97	96.30	96.77	92.86	89.74	95.35	98.44	95.56	96.78	96.95	0.17	0.657161	0.823559
K	alternative_donor	DNMT1	chr19	-	chr19:10244984-10246411	chr19:10244984-10246114		chr19:10246115-10246411	chr19:10246411-10246412		1.59	0.94	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.63	1.22	NA	6.25	0.00	5.00	0.00	0.00	NA	0.00	3.70	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.412577	0.675004
K	intron_retention		chr14	-	chr14:74756822-74756993				chr14:74756821-74756822;chr14:74756993-74756994		12.50	0.00	12.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	NA	0.00	8.33	8.57	NA	5.88	NA	0.00	10.71	0.00	7.14	5.00	7.14	0.00	0.00	0.00	0.517295	1.000000
K	jcn_only_AA	EXOSC10	chr1	-	chr1:11131031-11132143	chr1:11131046-11132143		chr1:11131031-11131045	chr1:11131030-11131031		0.00	3.57	4.08	0.00	7.50	6.25	12.50	4.55	8.00	0.00	7.89	12.50	8.82	6.90	5.00	0.00	9.43	4.17	5.88	2.27	4.84	6.90	3.03	5.26	0.00	5.56	3.70	11.36	7.02	6.00	8.82	5.56	2.38	7.14	6.35	8.06	4.72	5.05	0.33	0.719315	0.875250
N	alternative_donor	RPL15	chr3	+	chr3:23958936-23959340;chr3:23958665-23959340;chr3:23958787-23959340	chr3:23958731-23959340		chr3:23958665-23958730;chr3:23958731-23958786;chr3:23958787-23958935	chr3:23958664-23958665;chr3:23958730-23958731;chr3:23958786-23958787		8.99	3.95	8.72	4.05	4.38	0.00	7.37	6.90	9.60	3.63	3.81	4.40	5.72	10.23	7.54	5.21	3.41	4.50	4.55	7.41	4.76	4.85	3.83	4.91	0.00	10.17	6.86	3.50	4.48	4.48	9.00	5.71	2.38	6.38	7.64	5.32	4.25	9.00	4.75	0.004270	0.155905
K	jcn_only_AA	TBC1D17	chr19	+	chr19:50388016-50390732	chr19:50388016-50388428		chr19:50388429-50390732	chr19:50390732-50390733		13.33	3.19	2.56	0.00	5.88	16.67	5.88	NA	18.75	NA	NA	NA	13.04	NA	31.58	12.50	NA	NA	6.06	0.00	6.45	NA	16.00	NA	8.06	15.38	8.57	8.33	6.25	9.09	7.41	3.92	2.22	17.65	9.09	15.79	5.97	10.37	4.40	0.525519	0.766267
N	jcn_only_AA	CDC34	chr19	+	chr19:537148-541345;chr19:537148-538677;chr19:537148-541342	chr19:537148-541338		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		93.33	96.97	90.91	88.00	87.95	93.44	92.86	87.88	97.87	94.64	91.23	86.36	88.46	97.06	89.29	96.72	90.16	93.33	90.48	100.00	97.01	95.00	95.24	94.74	94.38	90.00	96.83	97.37	85.48	96.88	88.57	95.83	95.38	100.00	95.56	91.53	93.62	91.66	-1.96	0.908667	0.968555
K	alternative_acceptor	C14orf166	chr14	+	chr14:52468585-52470957	chr14:52468585-52470911		chr14:52470912-52470957	chr14:52470957-52470958		100.00	85.71	93.62	100.00	81.25	72.73	90.74	100.00	100.00	100.00	89.83	100.00	100.00	85.71	91.49	89.09	84.21	87.50	78.69	85.71	80.00	100.00	78.69	76.92	100.00	88.46	85.71	89.19	85.71	80.43	75.68	79.66	74.36	86.84	81.25	90.91	88.22	87.08	-1.14	0.865610	0.954648
K	alternative_acceptor	PTOV1	chr19	+	chr19:50361040-50361165	chr19:50361040-50361160		chr19:50361161-50361165	chr19:50361165-50361166		100.00	90.28	100.00	100.00	100.00	100.00	96.00	91.67	NA	93.75	92.31	100.00	93.33	85.71	100.00	100.00	100.00	72.73	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	97.50	-0.50	0.690263	0.883019
N	cassette	SMARCA4	chr19	+	chr19:11169040-11170428	chr19:11169040-11169463;chr19:11169566-11170428		chr19:11169464-11169565			100.00	91.03	94.83	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.34	100.00	95.59	100.00	93.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	94.87	97.17	100.00	2.83	0.084155	0.641134
N	jcn_only_AA	SCAF11	chr12	-	chr12:46313093-46316245;chr12:46316015-46316245	chr12:46315978-46316245		chr12:46313093-46315977;chr12:46315978-46316014	chr12:46313092-46313093;chr12:46315977-46315978		97.96	51.52	94.64	79.17	82.05	66.67	100.00	95.92	95.12	92.31	96.67	97.62	96.36	93.75	94.59	100.00	97.89	95.83	72.73	88.46	62.50	100.00	84.09	91.18	46.43	93.22	92.68	84.00	86.05	80.00	91.30	89.09	76.47	94.23	91.49	88.14	74.60	93.48	18.89	0.083366	0.663989
N	jcn_only_AD		chr22	-	chr22:21064286-21064976;chr22:21064286-21064889	chr22:21064286-21064986		chr22:21064890-21064976;chr22:21064977-21064986	chr22:21064976-21064977;chr22:21064986-21064987		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	98.86	100.00	100.00	100.00	100.00	100.00	0.00	0.482498	0.728721
K	jcn_only_AA	ING4	chr12	-	chr12:6761934-6762101	chr12:6761937-6762101		chr12:6761934-6761936	chr12:6761933-6761934		40.91	35.29	50.00	NA	46.15	NA	36.67	41.94	35.71	NA	33.33	NA	36.67	41.18	39.29	NA	45.00	NA	50.00	56.25	37.50	NA	37.50	NA	30.43	46.43	32.14	NA	50.00	NA	35.29	45.16	50.00	NA	41.18	NA	36.67	41.56	4.89	0.408706	0.681584
N	alternative_donor	TNFAIP2	chr14	+	chr14:103590289-103590711;chr14:103590251-103590711	chr14:103589821-103590711		chr14:103589821-103590250;chr14:103590251-103590288	chr14:103589820-103589821;chr14:103590250-103590251		0.00	0.00	9.09	NA	NA	NA	4.55	2.86	3.37	5.50	10.53	10.45	6.06	0.00	2.42	4.97	8.70	9.28	NA	6.90	NA	4.08	3.12	2.50	0.00	11.11	4.00	9.26	4.55	6.67	12.50	7.14	NA	0.00	11.54	4.02	2.27	4.88	2.60	0.317466	0.650093
N	alternative_acceptor		chr16	+	chr16:69355174-69356433;chr16:69355174-69356446	chr16:69355174-69356462		chr16:69356434-69356446;chr16:69356447-69356462	chr16:69356446-69356447;chr16:69356462-69356463		93.83	81.25	94.52	100.00	91.14	100.00	97.75	100.00	96.55	100.00	97.17	100.00	96.67	98.67	97.37	97.78	98.13	100.00	80.00	95.89	89.47	97.30	96.26	96.83	72.97	100.00	91.57	95.08	92.68	100.00	94.64	94.05	79.31	100.00	95.45	97.50	80.62	97.28	16.66	0.028198	0.546324
N	alternative_first_exon	LINC00511	chr17	-	chr17:62969046-62969349,chr17:62969046-62969694,chr17:62969046-62971677;chr17:62969046-62970672	chr17:62969046-62969359	chr17:62970673-62971694	chr17:62969360-62969635			81.25	94.12	94.12	70.00	82.14	NA	70.00	91.67	NA	NA	93.75	NA	71.43	NA	84.62	NA	71.43	NA	81.82	90.00	NA	76.92	80.00	80.00	NA	100.00	82.35	NA	69.57	NA	72.73	71.05	NA	77.27	75.00	100.00	76.62	90.00	13.38	0.323880	0.530527
K	intron_retention	COTL1	chr16	-	chr16:84651190-84651443				chr16:84651189-84651190;chr16:84651443-84651444		11.32	2.10	11.54	0.00	3.96	NA	1.64	7.89	7.14	1.39	2.06	1.19	1.47	3.57	NA	1.16	1.67	0.96	0.00	4.35	5.26	0.00	3.39	0.83	0.00	0.00	14.29	0.00	3.32	0.00	0.00	9.52	2.63	2.84	3.36	1.57	1.55	3.96	2.41	0.303372	1.000000
K	intron_retention		chr11	+	chr11:67068870-67068958				chr11:67068869-67068870;chr11:67068958-67068959		2.20	3.88	4.51	0.00	11.54	0.00	0.00	0.00	0.00	NA	6.67	NA	0.00	4.17	0.00	NA	0.00	NA	4.63	5.36	4.41	NA	10.64	0.00	4.47	5.88	4.17	NA	7.04	NA	0.00	4.39	4.18	0.00	7.69	0.00	4.03	3.19	-0.84	0.978684	1.000000
K	cassette	CNOT10	chr3	+	chr3:32804356-32806173	chr3:32804356-32805946;chr3:32805983-32806173		chr3:32805947-32805982			60.00	67.86	73.08	NA	73.91	NA	100.00	NA	100.00	NA	94.44	NA	85.71	NA	84.62	NA	90.00	NA	71.43	57.14	76.19	NA	81.25	NA	75.00	100.00	68.42	NA	81.25	80.00	80.00	61.11	68.18	72.73	100.00	72.73	73.22	70.00	-3.22	0.753106	0.921802
K	cassette	PSMD13	chr11	+	chr11:250866-252504	chr11:250866-251819;chr11:251937-252504		chr11:251820-251936			91.18	82.22	86.57	82.93	80.69	82.22	93.75	95.12	95.00	81.63	89.80	86.67	93.10	97.73	89.58	84.51	84.21	90.00	92.63	97.18	92.13	83.08	83.04	81.40	98.35	96.30	93.55	89.66	90.24	92.86	93.07	87.74	85.71	79.49	80.85	82.05	92.86	95.71	2.85	0.159647	0.709176
K	intron_retention		chr1	+	chr1:45101261-45101701				chr1:45101260-45101261;chr1:45101701-45101702		8.33	10.45	14.58	NA	14.29	NA	13.43	0.00	8.51	9.09	17.02	21.05	4.41	10.00	11.90	8.62	5.80	10.00	13.33	5.00	30.43	10.00	10.42	5.56	28.57	0.00	19.51	5.26	6.06	14.29	15.38	13.16	23.53	9.52	11.11	15.38	13.38	6.67	-6.71	0.347492	1.000000
N	jcn_only_AD	TRIM38	chr6	+	chr6:25975905-25983391;chr6:25982126-25983391;chr6:25975159-25983391	chr6:25973514-25983391		chr6:25973514-25975158;chr6:25975159-25975904;chr6:25975905-25982125	chr6:25973513-25973514;chr6:25975158-25975159;chr6:25975904-25975905		97.84	88.00	97.18	100.00	100.00	100.00	100.00	99.28	98.38	88.89	93.94	96.49	97.87	98.83	98.69	100.00	100.00	93.10	100.00	96.71	97.22	100.00	97.37	96.67	100.00	97.69	97.78	95.35	100.00	98.59	98.17	100.00	100.00	98.51	94.92	97.83	100.00	98.00	-2.00	0.832959	0.923758
N	jcn_only_AA	TBC1D2	chr9	-	chr9:100961819-100962534;chr9:100961871-100962534	chr9:100961867-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		3.12	0.00	5.36	5.36	6.99	8.33	6.82	4.08	6.25	4.35	2.73	NA	10.42	5.41	0.00	8.89	4.76	NA	10.00	4.84	9.68	6.82	4.00	0.00	0.00	5.97	7.69	10.00	10.84	9.09	7.75	10.75	6.57	6.33	5.32	8.33	6.70	5.12	-1.57	0.833361	0.934512
N	cassette	EIF2S2	chr20	-	chr20:32678409-32684462	chr20:32678409-32681480;chr20:32681538-32684462		chr20:32681481-32681537			94.96	90.62	95.42	95.71	92.31	92.65	95.51	96.25	97.09	100.00	93.42	94.20	100.00	96.05	97.27	98.26	94.25	100.00	93.55	95.33	95.05	95.79	94.17	94.34	88.46	97.67	95.93	100.00	100.00	100.00	95.50	92.68	95.77	100.00	96.19	95.00	94.53	95.78	1.25	0.296952	0.709176
N	cassette	UBE2F,UBE2F-SCLY	chr2	+	chr2:238903452-238939196;chr2:238896635-238933982;chr2:238881868-238933982;chr2:238903452-238933982	chr2:238881868-238925207,chr2:238903452-238925207,chr2:238896635-238925207;chr2:238925276-238939196,chr2:238925276-238933982		chr2:238925208-238925275			84.76	87.69	86.21	92.00	91.30	91.67	95.83	92.62	92.22	96.81	92.39	95.73	93.67	90.52	92.47	89.66	96.59	92.65	100.00	86.36	93.33	86.96	88.00	86.49	100.00	88.89	83.87	90.91	94.83	96.00	80.70	87.23	85.00	94.29	90.91	92.14	94.75	87.62	-7.12	0.069660	0.624766
K	intron_retention		chr11	+	chr11:74911433-74913945				chr11:74911432-74911433;chr11:74913945-74913946		11.20	7.21	16.28	0.00	3.92	0.00	0.48	0.00	0.00	0.00	2.52	0.00	2.01	1.82	0.00	1.10	2.58	0.00	1.85	8.24	0.00	7.69	14.06	0.00	4.50	7.27	10.39	10.64	10.96	0.00	NA	9.52	0.00	8.33	10.99	0.00	1.93	7.27	5.34	0.739098	1.000000
N	cassette	UBE2K	chr4	+	chr4:39700011-39776453;chr4:39700011-39757276	chr4:39700011-39747371;chr4:39747431-39776453,chr4:39747431-39757276		chr4:39747372-39747430			90.48	100.00	81.58	100.00	100.00	NA	96.15	93.10	88.89	100.00	100.00	100.00	100.00	94.12	87.80	95.65	100.00	100.00	NA	77.78	86.96	89.47	86.36	87.50	NA	80.65	90.00	100.00	95.00	87.50	65.38	67.65	100.00	94.44	100.00	83.87	100.00	85.56	-14.44	0.018564	0.373030
N	jcn_only_AD	CDYL	chr6	+	chr6:4952608-4954131;chr6:4952644-4954131	chr6:4952877-4954131		chr6:4952608-4952643;chr6:4952644-4952876	chr6:4952607-4952608;chr6:4952643-4952644		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AD	FIP1L1	chr4	+	chr4:54319301-54324819	chr4:54319310-54324819		chr4:54319301-54319309	chr4:54319300-54319301		0.00	0.00	0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	2.00	1.28	0.00	1.85	0.00	3.51	1.11	2.44	0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	3.03	1.72	0.00	0.00	0.00	0.788663	0.901241
K	intron_retention		chr2	+	chr2:232576130-232576596				chr2:232576129-232576130;chr2:232576596-232576597		10.17	3.39	7.81	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.45	0.00	0.42	0.00	0.00	0.00	0.53	0.00	2.53	5.97	6.90	3.26	2.37	2.88	0.00	0.00	2.50	1.22	2.44	0.00	15.22	13.04	3.66	3.67	2.45	0.90	1.47	2.98	1.51	0.489399	1.000000
K	alternative_acceptor	PRPF3	chr1	+	chr1:150316738-150316909	chr1:150316738-150316851		chr1:150316852-150316909	chr1:150316909-150316910		5.56	0.00	7.84	5.88	4.35	0.00	0.00	0.00	1.85	0.00	0.00	1.04	0.00	0.00	1.30	0.00	0.00	0.00	14.29	7.14	5.26	0.00	0.00	6.49	NA	3.51	3.12	4.17	0.00	2.78	10.42	7.69	5.26	4.65	5.41	6.82	0.00	4.54	4.54	0.875809	0.956769
K	jcn_only_AA	ACD	chr16	-	chr16:67691932-67692457	chr16:67692266-67692457		chr16:67691932-67692265	chr16:67691931-67691932		87.50	100.00	86.67	90.00	90.00	92.31	100.00	NA	100.00	100.00	NA	NA	100.00	90.00	100.00	NA	100.00	NA	69.57	86.67	90.00	NA	91.67	NA	90.00	100.00	100.00	NA	93.33	NA	100.00	95.24	88.00	92.31	91.67	94.44	95.00	90.00	-5.00	0.789934	0.908919
N	jcn_only_AA	TRIM28	chr19	+	chr19:59060144-59060252;chr19:59060144-59060206;chr19:59060144-59060231	chr19:59060144-59060228		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		100.00	100.00	95.88	100.00	91.80	100.00	98.37	100.00	96.40	97.44	96.43	98.44	98.09	94.37	98.45	97.14	100.00	97.13	100.00	92.31	98.11	97.50	96.51	95.74	100.00	94.29	91.01	100.00	96.34	94.83	94.29	91.58	87.50	100.00	92.75	100.00	99.19	94.33	-4.85	0.562069	0.792395
N	alternative_acceptor	LEMD2	chr6	-	chr6:33752205-33754510	chr6:33752297-33754510		chr6:33752205-33752296	chr6:33752204-33752205		0.00	0.00	3.23	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.25	3.45	NA	3.85	0.00	4.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	KCNN4	chr19	-	chr19:44276256-44278343;chr19:44276284-44278343	chr19:44276288-44278343		chr19:44276256-44276283;chr19:44276284-44276287	chr19:44276255-44276256;chr19:44276283-44276284		97.01	100.00	92.47	98.28	96.77	94.74	96.00	98.00	100.00	99.12	97.33	99.35	100.00	100.00	100.00	97.59	99.47	97.45	100.00	94.87	91.14	95.00	97.28	94.27	NA	100.00	94.64	95.60	98.37	97.21	100.00	95.45	100.00	95.89	98.21	93.58	100.00	99.00	-1.00	0.469636	0.730109
N	jcn_only_AA	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083274;chr19:1083066-1083151	chr19:1083066-1083141		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		79.55	92.31	85.71	92.31	89.39	88.24	100.00	100.00	91.55	82.14	81.54	100.00	92.08	90.16	91.51	100.00	86.11	78.57	87.72	90.48	85.00	92.86	89.19	86.36	100.00	78.57	93.75	84.21	91.38	95.83	90.00	97.62	78.46	96.30	100.00	91.43	92.19	90.08	-2.11	0.452421	0.715134
K	alternative_acceptor	RHBDD3	chr22	-	chr22:29656854-29659823	chr22:29656858-29659823		chr22:29656854-29656857	chr22:29656853-29656854		NA	36.36	38.46	NA	20.83	21.43	5.00	12.50	5.26	NA	NA	NA	9.52	18.18	9.09	6.25	13.33	NA	27.27	NA	17.86	NA	23.08	NA	21.05	16.67	11.76	NA	18.18	NA	28.57	16.00	20.00	18.75	18.75	24.00	20.52	17.43	-3.10	0.882119	0.960122
K	alternative_donor	PBXIP1	chr1	-	chr1:154920482-154920701	chr1:154920482-154920608		chr1:154920609-154920701	chr1:154920701-154920702		93.10	100.00	100.00	NA	NA	NA	97.73	95.24	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	92.59	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.56	NA	100.00	100.00	100.00	98.87	100.00	1.13	0.700190	0.872310
N	alternative_acceptor	ATG5	chr6	-	chr6:106634338-106649846	chr6:106634552-106649846		chr6:106634338-106634551	chr6:106634337-106634338		92.31	100.00	95.65	100.00	100.00	88.24	100.00	93.10	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	94.94	-5.06	0.039750	0.560254
N	alternative_acceptor	KLC1,RP11-73M18.2	chr14	+	chr14:104143861-104145720;chr14:104143861-104145645	chr14:104143861-104145744		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		14.81	17.81	23.73	21.43	23.88	17.65	20.41	20.34	25.45	18.00	15.00	19.05	18.18	20.27	26.39	26.47	24.36	25.58	22.92	17.78	15.28	25.00	23.64	20.00	26.56	14.52	17.74	16.67	18.18	13.95	18.60	23.19	16.98	23.68	19.35	20.51	19.30	18.19	-1.11	0.166454	0.660713
N	cassette	TMEM147	chr19	+	chr19:36036860-36037573	chr19:36036860-36037427;chr19:36037488-36037573		chr19:36037428-36037487			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	CIRBP	chr19	+	chr19:1273715-1274305				chr19:1273714-1273715;chr19:1274305-1274306		91.84	91.16	90.22	79.63	87.04	86.18	85.71	NA	75.00	NA	80.00	NA	90.00	90.91	81.58	84.62	77.78	NA	90.96	81.63	87.16	86.67	91.43	90.74	91.70	88.61	87.62	87.80	86.84	90.00	81.82	87.25	85.22	85.19	87.72	89.29	90.48	88.61	-1.87	0.362720	1.000000
N	jcn_only_AA	ATXN2L,SH2B1	chr16	+	chr16:28842394-28843594;chr16:28842394-28843525	chr16:28842394-28843507		chr16:28843508-28843525;chr16:28843526-28843594	chr16:28843525-28843526;chr16:28843594-28843595		10.00	36.36	13.33	NA	NA	NA	7.58	11.86	12.17	6.32	7.27	11.36	8.75	5.13	9.52	7.29	6.90	3.64	NA	8.82	NA	11.11	15.56	17.24	0.00	12.12	7.41	0.00	10.34	6.25	12.50	9.80	NA	5.08	10.17	6.06	8.16	10.93	2.77	0.724844	0.877626
K	coord_cassette	FNBP1	chr9	-	chr9:132671279-132687238	chr9:132671279-132678244;chr9:132678260-132686122;chr9:132686306-132687238		chr9:132678245-132678259;chr9:132686123-132686305			4.76	6.67	5.13	NA	0.00	NA	3.09	10.26	1.19	1.08	0.00	5.44	3.51	10.71	0.74	1.69	1.22	2.36	0.00	0.00	7.14	0.00	4.17	2.86	NA	0.00	0.00	10.00	7.14	6.25	0.00	2.56	9.09	0.00	2.78	3.66	3.51	2.38	-1.13	0.945672	0.972993
N	jcn_only_AD	TCIRG1	chr11	+	chr11:67816762-67817129;chr11:67816899-67817129;chr11:67816922-67817129;chr11:67816758-67817129	chr11:67816905-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		12.87	12.29	10.61	7.14	5.59	7.14	0.00	1.63	0.00	0.00	0.00	0.00	1.18	1.57	5.26	0.00	0.00	0.00	6.93	13.10	7.60	6.52	4.09	4.35	5.51	8.26	10.16	6.50	5.82	7.41	12.00	13.96	7.45	7.96	10.26	6.20	6.22	10.13	3.91	0.374472	0.657607
K	cassette	PABPC4	chr1	-	chr1:40030215-40030777	chr1:40030215-40030357;chr1:40030446-40030777		chr1:40030358-40030445			89.29	97.10	94.44	93.10	100.00	NA	98.45	100.00	95.65	99.00	97.58	100.00	100.00	85.71	92.31	97.62	97.09	100.00	100.00	92.59	100.00	92.68	94.89	96.30	100.00	100.00	90.48	100.00	97.94	97.37	90.00	93.33	91.30	94.07	96.74	96.95	99.22	91.30	-7.93	0.117463	0.709176
K	intron_retention	SLC25A39	chr17	-	chr17:42398600-42398801				chr17:42398599-42398600;chr17:42398801-42398802		15.00	11.82	23.08	12.00	22.22	15.38	0.00	0.00	6.45	3.12	2.04	0.00	0.00	0.00	2.94	3.53	2.86	0.00	6.25	13.64	13.85	12.50	17.50	17.39	0.00	11.76	13.89	5.56	14.93	6.45	21.43	30.00	17.24	15.56	18.75	14.75	3.12	12.70	9.57	0.684574	1.000000
N	jcn_only_AA	PSMD1	chr2	+	chr2:232011071-232018277	chr2:232011071-232017430		chr2:232017431-232018277	chr2:232018277-232018278		7.89	0.00	5.63	0.00	6.90	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.45	3.51	0.00	0.00	0.00	2.63	5.77	0.00	3.45	5.41	2.53	0.00	1.31	1.31	0.107944	0.663989
N	jcn_only_AD	KAT5	chr11	+	chr11:65484454-65486060	chr11:65484458-65486060		chr11:65484454-65484457	chr11:65484453-65484454		6.25	0.00	6.25	0.00	2.44	8.11	0.00	3.45	0.00	0.00	0.00	0.00	0.00	4.26	5.17	0.00	0.00	0.00	13.64	6.25	7.89	8.33	8.33	17.50	0.00	10.20	9.76	0.00	6.06	5.56	13.79	13.33	0.00	7.50	3.12	10.17	0.00	6.25	6.25	0.100218	0.639657
N	jcn_only_AD	CDYL	chr6	+	chr6:4952608-4954131;chr6:4952877-4954131	chr6:4952644-4954131		chr6:4952608-4952643;chr6:4952644-4952876	chr6:4952607-4952608;chr6:4952643-4952644		100.00	100.00	96.43	96.49	100.00	96.64	100.00	100.00	100.00	100.00	100.00	97.22	100.00	96.15	100.00	100.00	100.00	96.67	93.33	100.00	97.44	100.00	100.00	93.33	100.00	94.59	100.00	100.00	100.00	98.80	100.00	100.00	92.31	100.00	96.43	100.00	100.00	100.00	0.00	0.651530	0.819306
N	jcn_only_AA	SLC26A6	chr3	-	chr3:48664489-48665378;chr3:48664541-48665378	chr3:48664486-48665378		chr3:48664486-48664488;chr3:48664489-48664540	chr3:48664485-48664486;chr3:48664488-48664489		67.65	74.36	65.22	NA	61.54	NA	68.75	NA	60.87	NA	57.14	NA	61.54	NA	47.83	NA	61.54	NA	73.33	75.00	60.00	NA	76.00	NA	NA	70.59	62.96	NA	57.14	NA	65.38	66.23	74.07	63.64	41.67	75.00	73.33	69.12	-4.21	0.820404	0.927675
K	intron_retention		chr17	-	chr17:42397805-42397989				chr17:42397804-42397805;chr17:42397989-42397990		4.35	3.40	6.50	3.33	5.48	1.89	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.69	0.00	2.78	9.38	3.94	2.50	5.93	3.12	5.56	3.33	2.04	0.00	0.74	2.13	14.71	8.14	4.23	2.27	4.11	0.92	3.09	3.84	0.75	0.638113	1.000000
N	jcn_only_AA	MGEA5	chr10	-	chr10:103547267-103550652	chr10:103547281-103550652		chr10:103547267-103547280	chr10:103547266-103547267		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
N	alternative_donor	PRKCSH	chr19	+	chr19:11560244-11561460	chr19:11560256-11561460		chr19:11560244-11560255	chr19:11560243-11560244		12.50	4.80	15.62	1.75	2.07	0.60	17.05	14.55	20.00	11.84	9.09	6.06	15.22	15.91	12.20	13.79	11.34	9.62	0.86	12.82	2.86	7.84	11.93	11.63	2.79	16.00	16.48	7.58	9.32	3.67	6.61	11.01	1.68	10.81	11.11	9.84	3.79	13.69	9.89	0.106571	0.516298
K	intron_retention	MRPL43	chr10	-	chr10:102746330-102746443				chr10:102746329-102746330;chr10:102746443-102746444		100.00	93.02	91.89	100.00	92.96	92.00	90.70	84.62	90.00	88.46	96.77	91.67	87.50	83.33	92.59	97.06	94.12	80.00	92.50	90.91	97.14	100.00	93.94	NA	100.00	85.71	93.75	100.00	94.12	100.00	100.00	92.59	93.75	100.00	96.15	100.00	92.76	88.31	-4.45	0.893302	1.000000
K	jcn_only_AD	C4orf48	chr4	+	chr4:2043796-2044053	chr4:2043903-2044053		chr4:2043796-2043902	chr4:2043795-2043796		0.00	1.87	4.76	6.45	3.92	5.77	0.00	8.00	11.54	12.50	3.03	8.33	5.88	8.70	6.67	15.00	11.11	30.00	6.82	0.00	6.42	NA	8.33	NA	3.88	0.00	0.00	0.00	9.76	11.76	0.00	0.00	4.13	0.00	11.11	6.25	4.00	0.00	-4.00	0.643836	0.818639
K	alternative_acceptor	GPX4	chr19	+	chr19:1105510-1105663	chr19:1105510-1105656		chr19:1105657-1105663	chr19:1105663-1105664		100.00	100.00	100.00	93.75	92.55	92.12	100.00	97.28	100.00	100.00	100.00	100.00	100.00	96.03	100.00	100.00	100.00	100.00	89.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.11	87.50	100.00	100.00	100.00	91.37	92.11	89.21	100.00	100.00	100.00	0.00	0.372626	0.709013
K	intron_retention	AC005253.4	chr19	-	chr19:18679602-18680039				chr19:18679601-18679602;chr19:18680039-18680040		92.47	100.00	95.74	92.77	96.73	97.08	93.33	92.86	100.00	94.00	96.92	100.00	94.44	100.00	100.00	92.31	92.73	100.00	100.00	100.00	95.77	100.00	95.56	84.09	100.00	100.00	95.19	100.00	100.00	100.00	100.00	100.00	93.41	100.00	94.87	87.01	97.22	100.00	2.78	0.995055	1.000000
N	alternative_acceptor	SELPLG	chr12	-	chr12:109017664-109017693;chr12:109017514-109017693	chr12:109017574-109017693		chr12:109017514-109017573;chr12:109017574-109017663	chr12:109017513-109017514;chr12:109017573-109017574		2.50	0.00	1.54	NA	0.00	NA	0.80	8.33	1.02	2.70	0.98	4.35	2.14	6.67	4.27	3.23	0.78	8.70	NA	3.57	0.00	NA	2.78	NA	5.26	7.69	1.69	9.09	2.13	NA	NA	2.04	NA	7.14	4.17	4.55	1.47	6.67	5.20	0.058625	0.570243
N	jcn_only_AA	ABHD12	chr20	-	chr20:25281425-25282854;chr20:25270866-25282854;chr20:25275667-25282854;chr20:25282270-25282854	chr20:25282015-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		0.00	0.00	NA	0.00	0.65	0.00	6.67	18.18	NA	5.00	10.64	0.00	0.00	0.00	NA	2.70	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	NA	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.258171	0.663989
N	jcn_only_AD	FDXR	chr17	-	chr17:72861054-72861840	chr17:72861054-72861833		chr17:72861834-72861840	chr17:72861840-72861841		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	8.33	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	SEC24C	chr10	+	chr10:75530557-75530712				chr10:75530556-75530557;chr10:75530712-75530713		3.17	0.00	5.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.78	0.00	0.00	3.85	0.00	2.44	3.53	0.00	0.00	0.00	3.95	0.00	1.12	0.00	8.33	1.54	0.00	3.45	3.09	2.67	0.00	1.58	1.58	0.290693	1.000000
K	jcn_only_AD	ING4	chr12	-	chr12:6761934-6762110	chr12:6761934-6762101		chr12:6762102-6762110	chr12:6762110-6762111		76.47	84.62	63.64	NA	NA	NA	70.37	66.67	69.23	NA	71.43	NA	76.00	58.82	70.83	NA	64.71	NA	64.29	70.00	76.92	NA	83.33	NA	100.00	78.95	79.17	NA	63.64	NA	78.57	77.27	NA	NA	100.00	NA	76.00	73.23	-2.77	0.326615	0.657607
K	cassette	TXNRD1	chr12	+	chr12:104683321-104705067;chr12:104682819-104705067	chr12:104682819-104684770,chr12:104683321-104684770;chr12:104684883-104705067		chr12:104684771-104684882			0.00	0.00	3.28	NA	NA	NA	3.16	9.18	9.17	7.75	5.02	7.05	4.17	12.50	11.61	5.57	4.44	9.02	NA	0.00	NA	0.00	0.00	0.95	0.00	2.13	0.00	0.79	0.00	0.00	0.00	0.00	NA	0.26	0.65	0.62	1.58	1.06	-0.52	0.418888	0.728068
N	jcn_only_AD	DHPS	chr19	-	chr19:12790737-12791009;chr19:12790737-12790963;chr19:12790737-12791015	chr19:12790737-12790974		chr19:12790964-12790974;chr19:12790975-12791009;chr19:12791010-12791015	chr19:12790974-12790975;chr19:12791009-12791010;chr19:12791015-12791016		82.14	100.00	91.43	NA	88.24	NA	93.94	87.50	100.00	93.33	91.43	95.83	100.00	90.00	96.30	100.00	100.00	100.00	100.00	92.86	91.67	NA	84.62	NA	NA	87.50	87.88	NA	92.86	100.00	88.89	80.00	83.33	NA	81.25	91.67	100.00	88.19	-11.81	0.089513	0.632469
N	cassette	JMJD6	chr17	-	chr17:74716581-74717879;chr17:74716581-74717917	chr17:74716581-74717344;chr17:74717434-74717879,chr17:74717434-74717917		chr17:74717345-74717433			17.39	25.00	15.00	21.21	8.33	25.00	6.25	6.67	0.00	4.65	0.00	0.00	0.00	11.11	12.50	4.65	3.45	0.00	21.21	14.71	14.52	21.74	8.70	21.05	16.67	16.67	7.55	12.50	10.34	7.89	25.49	21.15	20.00	10.26	16.00	20.00	18.34	15.69	-2.64	0.920614	0.979285
N	jcn_only_AA		chr3	+	chr3:9969905-9970005	chr3:9969905-9969988		chr3:9969989-9970005	chr3:9970005-9970006		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	90.91	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	90.00	NA	NA	NA	100.00	100.00	0.00	0.391002	0.663989
N	cassette	RASSF4	chr10	+	chr10:45478112-45480260;chr10:45467297-45480260	chr10:45467297-45479469,chr10:45478112-45479469;chr10:45479562-45480260		chr10:45479470-45479561			97.22	100.00	95.68	NA	NA	NA	100.00	100.00	99.80	99.27	95.83	100.00	100.00	99.60	100.00	100.00	96.20	100.00	NA	97.73	95.59	95.24	100.00	95.45	100.00	100.00	98.67	100.00	100.00	99.00	100.00	92.19	NA	96.97	97.92	99.09	100.00	99.80	-0.20	0.140690	0.709176
K	alternative_donor	TP53I3	chr2	-	chr2:24303902-24305870	chr2:24303902-24305754		chr2:24305755-24305870	chr2:24305870-24305871		NA	100.00	100.00	81.82	96.43	90.00	90.24	95.65	89.47	94.12	93.33	86.67	86.96	88.89	83.33	NA	92.31	NA	86.49	93.33	86.67	NA	100.00	83.33	94.12	100.00	100.00	100.00	89.29	100.00	100.00	90.91	86.11	90.00	96.15	90.91	88.60	95.65	7.05	0.144620	0.560769
N	alternative_acceptor	PLXND1	chr3	-	chr3:129284861-129285369	chr3:129284873-129285369		chr3:129284861-129284872	chr3:129284860-129284861		1.22	5.38	2.01	NA	4.76	NA	0.00	0.00	0.97	0.00	0.34	0.00	0.28	0.00	0.62	0.84	0.00	0.00	4.00	1.30	2.17	2.50	3.03	1.56	5.95	0.00	1.66	0.00	2.86	0.00	0.00	0.00	0.00	0.00	1.99	0.00	2.14	0.00	-2.14	0.118683	0.606219
N	cassette	USP4	chr3	-	chr3:49318281-49321898	chr3:49318281-49321419;chr3:49321570-49321898		chr3:49321420-49321569			100.00	100.00	100.00	100.00	97.87	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.67	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.48	96.92	100.00	96.43	97.89	100.00	100.00	100.00	0.00	0.201581	0.709176
N	cassette	PI4KA	chr22	-	chr22:21063668-21064986	chr22:21063668-21064195;chr22:21064286-21064986		chr22:21064196-21064285			100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	95.00	96.23	100.00	100.00	100.00	96.67	100.00	97.92	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	CHKB-CPT1B	chr22	-	chr22:51007511-51007641;chr22:51007511-51007595;chr22:51007511-51007604	chr22:51007511-51007764		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		67.74	80.85	65.00	64.29	78.57	70.00	NA	NA	NA	NA	NA	NA	NA	NA	70.00	NA	NA	NA	62.50	71.43	68.75	NA	70.00	NA	71.60	66.67	67.65	NA	NA	NA	74.19	72.41	78.95	NA	NA	NA	75.28	69.59	-5.69	0.484892	0.744342
K	alternative_acceptor	RAD23A,TIMM50	chr19	+	chr19:13059173-13059327	chr19:13059173-13059310		chr19:13059311-13059327	chr19:13059327-13059328		92.00	100.00	96.97	85.71	87.23	81.82	98.48	100.00	91.89	95.24	96.33	97.96	98.94	100.00	93.88	94.06	96.83	100.00	100.00	88.89	100.00	89.74	92.73	90.24	100.00	100.00	93.65	87.72	90.74	100.00	100.00	87.23	89.47	88.89	91.38	89.06	99.47	100.00	0.53	0.715080	0.892080
K	intron_retention	FES	chr15	+	chr15:91437289-91438645				chr15:91437288-91437289;chr15:91438645-91438646		6.56	3.77	4.00	0.00	1.90	1.33	0.00	0.00	0.00	0.00	0.00	NA	1.25	NA	0.00	0.00	0.00	NA	2.05	0.00	4.26	0.00	1.89	0.00	0.83	0.00	9.09	0.00	3.33	0.00	0.00	0.00	2.79	0.00	9.09	6.12	1.65	0.00	-1.65	0.590367	1.000000
K	cassette	BCL2L12	chr19	+	chr19:50170057-50172107	chr19:50170057-50170278;chr19:50170419-50172107		chr19:50170279-50170418			63.64	28.00	65.62	NA	50.00	NA	90.91	NA	100.00	NA	NA	NA	85.71	NA	100.00	81.82	83.33	NA	45.45	66.67	52.94	NA	54.55	NA	NA	81.82	60.00	NA	60.00	NA	43.75	48.39	31.82	NA	56.25	58.33	45.45	65.16	19.70	0.641050	0.868138
K	cassette	CSNK1D	chr17	-	chr17:80202708-80206750	chr17:80202708-80203851;chr17:80203916-80206750		chr17:80203852-80203915			35.29	33.33	40.66	45.12	40.00	54.02	62.35	64.22	53.06	67.50	66.20	63.83	71.68	58.54	53.45	66.94	63.53	59.26	37.88	39.53	37.37	46.03	44.19	56.58	25.00	39.58	34.78	61.54	47.96	58.82	31.25	33.33	25.97	49.51	38.46	51.41	35.61	39.55	3.95	0.838795	0.946167
K	cassette	BCL2A1	chr15	-	chr15:80253517-80263041	chr15:80253517-80259978;chr15:80260035-80263041		chr15:80259979-80260034			7.80	33.33	7.98	13.57	8.33	13.81	6.82	7.87	6.70	9.08	7.27	9.91	13.33	6.52	8.37	8.44	8.82	8.66	5.77	4.68	11.70	5.82	5.45	6.36	3.45	3.41	3.13	5.90	6.25	9.14	14.29	5.85	9.17	10.53	13.24	12.11	8.00	7.16	-0.83	0.373624	0.709176
K	intron_retention		chr22	-	chr22:50687598-50687756				chr22:50687597-50687598;chr22:50687756-50687757		8.00	0.00	17.65	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	7.69	0.00	0.00	0.00	NA	14.29	0.00	NA	6.67	0.00	8.33	0.00	4.35	8.33	10.00	0.00	NA	4.35	NA	0.00	6.25	4.35	0.00	4.00	4.00	0.801520	1.000000
N	alternative_acceptor	NMRK1	chr9	-	chr9:77692120-77692405	chr9:77692124-77692405		chr9:77692120-77692123	chr9:77692119-77692120		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	94.12	100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	0.00	0.391002	0.709013
K	cassette	SAT2	chr17	-	chr17:7530112-7530460	chr17:7530112-7530260;chr17:7530363-7530460		chr17:7530261-7530362			31.68	24.27	36.54	30.00	20.00	23.08	84.78	81.73	79.55	90.48	80.85	86.36	60.00	50.47	48.94	48.78	58.54	74.07	20.83	23.46	32.94	25.00	22.62	30.00	30.77	65.71	57.69	44.23	46.23	53.12	27.69	23.68	18.85	26.42	21.82	35.42	27.52	41.08	13.56	0.645183	0.869719
N	jcn_only_AA	TBC1D2	chr9	-	chr9:100979480-100983114;chr9:100975501-100983114	chr9:100982536-100983114		chr9:100975501-100979479;chr9:100979480-100982535	chr9:100975500-100975501;chr9:100979479-100979480		0.00	0.00	0.00	NA	0.00	NA	1.16	0.00	0.00	0.00	0.00	NA	0.00	6.67	0.00	0.00	0.00	NA	NA	2.27	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.310208	0.663989
K	intron_retention	CCDC88A	chr2	-	chr2:55515492-55518811				chr2:55515491-55515492;chr2:55518811-55518812		39.29	44.26	46.67	38.46	52.17	41.18	62.86	32.14	44.44	27.78	41.30	41.67	43.90	33.33	45.83	38.10	47.37	29.41	45.65	47.37	37.25	46.88	50.00	41.18	60.00	42.55	41.94	44.44	55.56	47.06	46.15	48.65	70.97	54.55	48.33	45.83	52.83	40.92	-11.91	0.963221	1.000000
K	mutually_exclusive	FLAD1	chr1	+	chr1:154963005-154965188,chr1:154965263-154965377	chr1:154963005-154965040,chr1:154965150-154965377	chr1:154965189-154965262	chr1:154965041-154965149			0.00	0.00	0.00	0.00	3.03	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.51	NA	6.25	NA	0.00	0.00	0.00	0.373901	0.510003
K	cassette	HPS1	chr10	-	chr10:100193849-100195391	chr10:100193849-100195028;chr10:100195172-100195391		chr10:100195029-100195171			50.00	70.59	63.04	NA	52.17	NA	92.41	95.00	89.47	93.94	93.22	88.24	80.33	86.96	80.00	81.82	74.03	82.35	NA	69.23	64.29	70.27	65.91	76.74	58.33	73.81	64.44	69.70	71.64	95.00	60.61	60.78	50.00	58.82	54.76	67.44	70.59	71.52	0.93	0.828350	0.942757
K	intron_retention	TRPC4AP	chr20	-	chr20:33593607-33594237				chr20:33593606-33593607;chr20:33594237-33594238		5.13	8.89	5.56	0.00	3.70	NA	0.00	0.00	0.86	0.00	0.00	0.00	1.96	1.40	1.30	0.00	0.00	0.00	0.00	3.73	4.65	7.69	3.23	6.56	NA	3.62	6.10	2.70	4.26	3.77	3.90	6.06	0.00	6.90	4.35	5.77	0.00	3.67	3.67	0.952648	1.000000
K	intron_retention	NDUFV1	chr11	+	chr11:67374548-67375866				chr11:67374547-67374548;chr11:67375866-67375867		3.45	3.57	11.67	5.26	3.77	NA	0.00	0.00	0.00	0.00	1.92	0.00	1.53	0.00	6.52	0.00	2.83	0.00	6.67	15.38	5.56	3.45	7.69	0.00	14.29	23.08	19.51	6.90	9.68	2.86	11.76	17.78	5.56	6.52	14.29	3.70	4.56	7.61	3.04	0.747021	1.000000
N	alternative_acceptor	KIAA0368	chr9	-	chr9:114125579-114125867;chr9:114124413-114125867	chr9:114124450-114125867		chr9:114124413-114124449;chr9:114124450-114125578	chr9:114124412-114124413;chr9:114124449-114124450		64.44	92.59	62.50	88.39	85.34	93.42	90.32	85.00	83.33	90.24	88.57	87.88	86.36	76.19	81.08	82.98	88.24	87.18	94.06	70.59	87.65	65.22	71.26	60.92	97.66	69.39	72.22	70.91	74.65	77.54	70.45	67.27	92.63	67.90	66.67	67.89	92.61	70.52	-22.09	0.000406	0.242646
K	intron_retention		chr16	-	chr16:28917200-28917339				chr16:28917199-28917200;chr16:28917339-28917340		0.00	2.38	0.00	0.00	5.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.56	0.00	3.03	0.00	3.57	NA	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.856396	1.000000
K	alternative_acceptor	YIPF3	chr6	-	chr6:43483834-43484464;chr6:43483852-43484464;chr6:43483926-43484464;chr6:43483929-43484464	chr6:43483785-43484464		chr6:43483785-43483833;chr6:43483834-43483851;chr6:43483852-43483925;chr6:43483926-43483928	chr6:43483784-43483785;chr6:43483833-43483834;chr6:43483851-43483852;chr6:43483925-43483926		0.00	3.77	5.77	NA	0.00	NA	0.00	0.00	6.78	9.68	0.00	0.00	0.00	8.77	5.17	4.35	9.30	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	6.45	6.49	19.05	5.13	0.00	4.17	1.49	0.00	0.00	0.00	5.88	0.00	3.94	3.94	0.077902	0.585944
N	alternative_acceptor	MRPS11	chr15	+	chr15:89015957-89018340;chr15:89015957-89018260	chr15:89015957-89018402		chr15:89018261-89018340;chr15:89018341-89018402	chr15:89018340-89018341;chr15:89018402-89018403		0.00	0.00	9.38	10.00	9.76	0.00	6.67	11.76	3.03	2.94	5.26	10.00	5.41	0.00	3.92	5.13	6.67	0.00	12.50	0.00	3.85	15.00	5.26	4.35	0.00	0.00	5.71	4.35	2.70	5.13	0.00	5.13	7.41	10.00	3.70	5.13	6.04	0.00	-6.04	0.250908	0.707267
K	intron_retention	EEF1D	chr8	-	chr8:144669020-144679517				chr8:144669019-144669020;chr8:144679517-144679518		4.00	4.29	9.52	10.71	11.76	9.09	0.00	7.69	3.70	2.38	0.00	0.00	0.00	0.00	16.67	0.00	4.35	0.00	6.25	7.69	5.13	9.38	7.84	6.67	5.08	13.64	0.00	11.54	10.53	17.24	7.14	10.91	5.56	9.09	10.71	12.00	4.69	7.42	2.73	0.478635	1.000000
N	alternative_donor	CARD16	chr11	-	chr11:104915386-104916017;chr11:104915386-104915917	chr11:104915386-104915522		chr11:104915523-104915917;chr11:104915918-104916017	chr11:104915917-104915918;chr11:104916017-104916018		3.70	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	4.00	0.00	0.00	NA	6.25	4.35	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	1.56	0.00	1.75	1.32	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.212352	0.584014
N	jcn_only_AD	TMEM126B	chr11	+	chr11:85345324-85346710;chr11:85345652-85346710	chr11:85345221-85346710		chr11:85345221-85345323;chr11:85345324-85345651	chr11:85345220-85345221;chr11:85345323-85345324		4.00	0.00	0.00	0.00	7.14	NA	0.00	0.00	0.00	3.85	0.00	2.86	3.23	0.00	4.00	0.00	4.08	7.14	0.00	4.17	3.70	0.00	0.00	3.33	NA	0.00	0.00	0.00	0.00	8.33	0.00	2.94	0.00	6.67	2.94	2.17	0.00	0.00	0.00	0.523416	0.754861
K	jcn_only_AD	TTC7A	chr2	+	chr2:47256524-47273453	chr2:47261509-47273453		chr2:47256524-47261508	chr2:47256523-47256524		0.00	0.00	0.00	NA	18.75	NA	3.33	0.00	0.00	NA	25.00	NA	6.00	0.00	0.00	NA	11.76	NA	10.00	0.00	NA	NA	6.52	NA	0.00	0.00	0.00	NA	11.76	NA	0.00	0.00	8.70	0.00	5.56	0.00	4.67	0.00	-4.67	0.044341	0.497155
N	alternative_donor	CSNK1A1	chr5	-	chr5:148876424-148885009;chr5:148876424-148884243;chr5:148876424-148885045	chr5:148876424-148878532		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		8.89	17.65	12.40	11.76	7.14	12.12	1.25	1.77	1.55	1.60	1.56	1.12	1.75	1.96	2.78	1.80	1.63	1.39	18.18	8.33	7.89	8.62	6.19	9.33	40.00	5.94	7.37	5.66	4.55	5.36	8.89	12.12	11.76	8.87	8.11	9.40	14.70	7.13	-7.57	0.181521	0.563271
K	jcn_only_AA	WDFY2	chr13	+	chr13:52325552-52329493	chr13:52325552-52326998		chr13:52326999-52329493	chr13:52329493-52329494		0.00	0.00	4.00	NA	NA	NA	0.00	0.00	0.00	NA	9.09	NA	0.00	11.43	13.04	NA	0.00	NA	NA	8.33	0.00	NA	NA	NA	0.00	8.82	0.00	NA	NA	NA	0.00	12.50	NA	NA	NA	NA	0.00	4.17	4.17	0.079915	0.663989
N	alternative_acceptor	NRP1	chr10	-	chr10:33486614-33491818;chr10:33486638-33491818	chr10:33488092-33491818		chr10:33486614-33486637;chr10:33486638-33488091	chr10:33486613-33486614;chr10:33486637-33486638		2.56	6.15	3.45	5.26	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.28	4.76	4.17	0.00	3.85	0.00	2.27	0.00	2.86	2.63	3.51	0.00	NA	0.00	3.64	0.00	3.70	0.00	2.77	0.00	-2.77	0.442749	0.750981
N	cassette	TYMP	chr22	-	chr22:50967768-50968332;chr22:50962854-50968332;chr22:50965979-50968332;chr22:50965168-50968332;chr22:50965713-50968332;chr22:50966147-50968332;chr22:50967040-50968332	chr22:50967768-50967924,chr22:50966147-50967924,chr22:50967040-50967924,chr22:50965168-50967924,chr22:50965979-50967924,chr22:50965713-50967924,chr22:50962854-50967924;chr22:50968161-50968332		chr22:50967925-50968160			85.80	47.72	73.50	49.29	43.43	40.43	100.00	98.37	98.76	99.05	97.82	98.52	99.35	96.19	96.52	97.38	96.35	98.40	68.71	91.23	83.02	80.16	69.27	87.43	62.67	95.04	88.67	92.57	83.92	92.01	84.71	86.92	52.51	76.88	80.98	85.14	65.69	93.14	27.45	0.084559	0.641134
K	coord_cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4455569-4462356	chr16:4455569-4457562;chr16:4457686-4458181;chr16:4458253-4462356		chr16:4457563-4457685;chr16:4458182-4458252			96.00	100.00	91.67	NA	NA	NA	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	94.29	100.00	92.86	100.00	NA	94.12	92.31	NA	95.65	100.00	96.55	100.00	96.96	-3.04	0.042350	0.643829
K	intron_retention	CUTA	chr6	-	chr6:33384554-33384696				chr6:33384553-33384554;chr6:33384696-33384697		3.03	2.67	4.00	0.00	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	4.76	0.49	2.04	0.82	0.00	0.66	0.00	2.63	0.00	0.45	0.00	8.33	6.45	2.92	0.00	2.22	0.00	1.03	1.51	0.48	0.335534	1.000000
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100979480-100983114;chr9:100975501-100983114	chr9:100982536-100983114		chr9:100975501-100979479;chr9:100979480-100982535	chr9:100975500-100975501;chr9:100979479-100979480		2.17	4.55	2.17	NA	0.00	NA	1.16	2.38	0.00	2.44	1.00	NA	2.33	3.45	0.00	2.08	2.13	NA	NA	2.27	0.00	4.76	2.17	9.09	5.88	3.92	2.56	3.85	2.17	NA	1.39	1.96	0.00	4.26	3.57	5.88	2.33	2.33	-0.00	0.876298	0.956890
N	cassette	DGKZ	chr11	+	chr11:46399780-46400752;chr11:46400051-46400752	chr11:46399780-46400443,chr11:46400051-46400443;chr11:46400662-46400752		chr11:46400444-46400661			100.00	94.32	97.06	90.91	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	95.56	NA	100.00	NA	91.53	100.00	100.00	NA	95.83	NA	100.00	100.00	96.43	100.00	100.00	100.00	98.22	100.00	1.78	0.244304	0.709176
K	jcn_only_AA	ZBTB8OS	chr1	-	chr1:33099674-33100368	chr1:33099712-33100368		chr1:33099674-33099711	chr1:33099673-33099674		13.04	0.00	17.50	25.00	20.37	16.00	15.79	20.00	20.00	19.15	18.18	10.00	17.07	20.00	21.95	8.82	14.49	12.50	19.44	36.36	21.95	29.41	23.91	11.76	12.50	40.00	25.81	14.29	23.53	14.81	37.50	22.58	37.93	25.00	18.18	14.29	16.43	28.18	11.75	0.150014	0.663989
K	intron_retention	USF2	chr19	+	chr19:35769696-35769848				chr19:35769695-35769696;chr19:35769848-35769849		4.79	6.48	6.36	10.16	10.76	5.38	1.44	1.94	1.42	2.33	1.44	1.73	1.15	1.27	1.49	2.07	2.14	0.71	6.50	4.07	5.26	7.41	10.42	5.85	3.74	2.72	5.65	4.66	5.19	4.58	4.62	3.82	5.19	5.56	6.62	6.64	4.46	3.40	-1.07	0.742789	1.000000
N	jcn_only_AD		chr19	-	chr19:55604602-55605722	chr19:55604602-55605712		chr19:55605713-55605722	chr19:55605722-55605723		100.00	100.00	98.91	100.00	100.00	85.71	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.70	100.00	100.00	100.00	100.00	100.00	100.00	99.30	100.00	100.00	100.00	100.00	95.97	100.00	100.00	94.67	100.00	100.00	100.00	0.00	0.208244	0.657607
K	alternative_donor	RPS15	chr19	+	chr19:1438428-1438805	chr19:1438580-1438805		chr19:1438428-1438579	chr19:1438427-1438428		9.23	0.29	3.70	1.17	0.34	0.65	0.64	1.45	1.38	0.43	0.35	1.06	0.28	3.03	3.18	0.79	1.28	1.27	0.42	1.80	0.98	1.23	0.99	0.44	1.08	1.96	1.00	0.90	0.26	0.67	5.99	2.70	1.09	1.59	2.04	1.03	0.53	2.50	1.97	0.048137	0.393087
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67811121-67811280;chr11:67811121-67811311	chr11:67811121-67811264		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		7.59	2.08	7.59	9.09	3.57	NA	0.00	1.40	1.67	1.11	0.73	0.00	0.00	2.61	3.45	0.00	0.94	2.00	0.00	2.52	4.65	2.50	1.27	0.00	7.69	6.57	6.42	6.82	5.88	4.35	4.55	3.53	4.35	5.33	0.00	5.06	1.04	3.58	2.54	0.283103	0.709013
K	alternative_last_exon	POLR1D	chr13	+	chr13:28222591-28239822	chr13:28222591-28224178	chr13:28239823-28241552	chr13:28224179-28225686			8.33	4.23	9.52	7.41	5.66	5.56	2.38	7.14	6.45	7.14	6.67	10.53	4.35	7.69	5.00	7.32	6.00	8.70	3.39	4.17	5.00	5.71	5.36	10.34	1.92	4.76	4.65	4.35	4.44	7.41	7.69	6.98	3.33	10.00	6.67	6.52	3.36	7.42	4.05	0.003306	0.103535
K	jcn_only_AA	MCRS1	chr12	-	chr12:49954149-49956783	chr12:49954154-49956783		chr12:49954149-49954153	chr12:49954148-49954149		92.68	100.00	96.43	93.33	97.30	100.00	100.00	92.00	97.50	96.30	97.96	100.00	100.00	100.00	94.59	100.00	98.25	96.43	95.00	93.10	91.18	93.33	95.92	85.00	100.00	92.86	96.88	100.00	95.00	93.10	91.30	91.67	100.00	92.31	95.56	88.10	100.00	92.77	-7.23	0.006522	0.450187
K	intron_retention		chr6	+	chr6:3017220-3019712				chr6:3017219-3017220;chr6:3019712-3019713		5.99	2.02	7.94	2.61	2.52	2.38	34.78	11.76	11.27	21.05	34.29	14.29	2.99	0.00	4.81	1.61	6.02	2.22	5.41	10.45	20.73	6.45	8.65	7.59	3.77	10.83	7.54	2.68	7.28	4.37	14.15	17.19	11.11	15.70	28.44	14.81	4.59	10.64	6.05	0.831376	1.000000
K	intron_retention	CASP1	chr11	-	chr11:104901231-104901891				chr11:104901230-104901231;chr11:104901891-104901892		3.33	0.00	7.02	0.00	0.00	0.00	0.00	0.43	0.69	1.22	0.00	2.78	1.30	0.42	1.79	2.40	2.00	1.85	0.00	4.11	2.70	4.29	1.28	7.77	NA	4.58	3.37	5.88	1.39	1.35	1.33	2.63	0.00	3.96	4.35	5.21	0.00	2.33	2.33	0.088056	1.000000
N	alternative_acceptor	NDUFAF1	chr15	-	chr15:41679779-41680645	chr15:41679792-41680645		chr15:41679779-41679791	chr15:41679778-41679779		69.23	75.61	76.92	80.00	79.41	78.12	76.19	69.23	73.33	NA	75.00	61.54	80.00	66.67	64.71	100.00	55.00	60.00	73.33	76.00	73.21	69.23	69.70	80.00	78.57	83.33	80.95	73.33	91.30	85.00	66.67	78.12	75.47	77.27	85.71	78.95	75.90	69.23	-6.67	0.150725	0.653349
N	alternative_acceptor	RNF213	chr17	+	chr17:78362490-78362972	chr17:78362490-78362943		chr17:78362944-78362972	chr17:78362972-78362973		3.47	13.64	2.59	0.00	0.00	1.96	1.56	1.38	0.00	0.00	0.00	0.71	1.14	0.97	1.23	1.50	2.50	0.41	NA	1.39	3.23	0.00	0.00	2.47	0.00	2.61	1.06	3.30	0.00	2.21	1.34	1.18	0.00	3.93	1.96	2.78	1.14	1.38	0.24	0.621013	0.854460
K	cassette	LILRA2	chr19	+	chr19:55087577-55098667	chr19:55087577-55088931;chr19:55089191-55098667		chr19:55088932-55089190			4.09	2.37	4.08	0.00	1.32	2.38	5.88	NA	8.33	8.33	9.52	0.00	NA	NA	NA	NA	NA	NA	1.46	2.67	7.69	0.00	1.85	0.00	2.53	3.17	2.44	0.00	5.26	0.00	10.00	6.25	9.66	11.54	8.51	7.27	2.53	3.63	1.10	0.799518	0.936947
N	intron_retention		chr22	-	chr22:50966162-50966940				chr22:50966161-50966162;chr22:50966940-50966941		95.19	100.00	99.19	100.00	100.00	100.00	NA	72.73	100.00	NA	NA	NA	NA	84.21	100.00	100.00	NA	NA	100.00	93.88	96.30	100.00	96.83	100.00	100.00	96.36	98.45	93.02	96.00	93.44	96.05	97.76	94.44	100.00	100.00	97.79	100.00	94.53	-5.47	0.149619	1.000000
K	cassette	FLNA	chrX	-	chrX:153583441-153585801	chrX:153583441-153585618;chrX:153585643-153585801		chrX:153585619-153585642			19.80	16.67	14.69	21.43	13.16	NA	14.86	12.95	12.41	27.44	21.29	26.41	19.10	16.91	16.83	27.43	22.68	33.51	18.75	20.22	12.12	22.65	20.57	26.21	15.56	21.56	19.47	29.49	28.57	35.09	20.65	21.59	17.65	22.07	21.67	25.04	17.16	20.01	2.85	0.319684	0.709176
K	intron_retention		chr1	+	chr1:155288083-155288455				chr1:155288082-155288083;chr1:155288455-155288456		19.57	9.26	20.78	5.26	12.73	7.69	0.00	0.00	2.00	0.00	0.00	2.56	1.69	13.33	5.81	1.59	3.51	0.00	8.70	21.43	7.04	17.65	19.15	17.65	2.94	15.79	13.64	3.85	8.33	6.90	26.32	22.00	15.62	7.69	13.95	12.50	5.82	17.68	11.86	0.196294	1.000000
K	jcn_only_AA	FLII	chr17	-	chr17:18155128-18155312	chr17:18155131-18155312		chr17:18155128-18155130	chr17:18155127-18155128		42.19	35.48	43.75	NA	NA	NA	55.46	57.80	52.87	57.26	51.47	56.60	53.62	50.00	56.03	59.66	54.14	60.38	NA	53.57	33.33	47.06	42.31	46.67	41.18	41.18	42.37	51.22	47.06	61.90	50.00	38.10	NA	35.00	38.24	44.94	47.40	50.00	2.60	0.646911	0.842418
K	intron_retention		chrX	+	chrX:23802521-23803444				chrX:23802520-23802521;chrX:23803444-23803445		81.71	69.00	85.24	77.92	80.04	76.81	78.49	72.12	49.02	72.44	70.06	76.53	83.33	72.32	68.92	74.12	65.90	74.82	86.00	78.83	80.18	81.64	80.94	86.71	93.02	83.35	83.60	83.46	82.96	83.04	73.97	77.86	69.23	88.94	86.18	89.44	80.91	76.40	-4.51	0.256304	1.000000
N	jcn_only_AA	ACTR10,PSME1	chr14	+	chr14:58686448-58690339	chr14:58686448-58690318		chr14:58690319-58690339	chr14:58690339-58690340		5.36	0.00	0.00	0.00	2.86	NA	0.00	0.00	1.85	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.56	0.00	5.41	0.00	0.00	0.00	1.30	1.49	0.00	0.00	0.00	0.00	0.250229	0.663989
N	alternative_donor	PARVG	chr22	+	chr22:44581753-44583655;chr22:44582597-44583655	chr22:44582522-44583655		chr22:44581753-44582521;chr22:44582522-44582596	chr22:44581752-44581753;chr22:44582521-44582522		6.45	7.14	18.42	NA	1.52	NA	0.71	4.55	4.35	0.00	1.37	0.00	3.01	5.88	5.00	2.08	2.14	0.00	2.56	7.14	3.57	4.17	7.45	2.50	11.11	10.53	14.71	4.17	4.40	0.00	NA	8.11	2.22	4.44	6.38	5.77	2.79	6.45	3.67	0.228220	0.597907
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400051-46400224;chr11:46400051-46400546;chr11:46400051-46400443	chr11:46400051-46400540		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		82.35	86.15	77.78	91.67	73.17	NA	97.44	92.31	100.00	NA	93.55	NA	92.68	88.89	87.50	91.67	88.89	NA	83.33	80.65	84.00	80.00	78.57	100.00	79.10	83.33	82.46	NA	82.93	NA	86.96	79.63	86.96	77.78	80.77	93.75	86.56	85.14	-1.41	0.579122	0.839743
K	intron_retention		chr18	-	chr18:74729225-74778253				chr18:74729224-74729225;chr18:74778253-74778254		0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	3.12	NA	0.00	7.69	NA	NA	0.00	NA	16.67	NA	NA	3.45	0.00	NA	0.00	0.00	0.00	0.608000	1.000000
N	cassette	NAPRT	chr8	-	chr8:144657696-144658601;chr8:144657696-144658247	chr8:144657696-144657791;chr8:144657873-144658601,chr8:144657873-144658247		chr8:144657792-144657872			100.00	100.00	100.00	100.00	95.56	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	97.30	100.00	95.56	100.00	97.22	NA	95.31	100.00	100.00	NA	100.00	100.00	94.87	97.50	94.61	100.00	100.00	100.00	98.65	100.00	1.35	0.360916	0.709176
K	cassette	FAM193B	chr5	-	chr5:176949073-176950957	chr5:176949073-176950163;chr5:176950267-176950957		chr5:176950164-176950266			0.00	0.00	5.71	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	6.25	2.70	NA	4.35	NA	0.00	10.00	2.17	NA	0.00	0.00	0.00	2.70	2.78	0.00	0.00	5.26	0.00	3.12	3.12	0.268974	0.709176
N	cassette	SUSD1	chr9	-	chr9:114804241-114814678;chr9:114804241-114814434;chr9:114804241-114820707	chr9:114804241-114804380;chr9:114804446-114814678,chr9:114804446-114820707,chr9:114804446-114814434		chr9:114804381-114804445			5.41	0.00	3.57	8.33	6.45	0.00	4.00	9.80	13.33	16.67	9.09	6.90	3.77	12.96	8.00	13.33	7.14	7.69	5.41	10.26	8.00	6.25	4.35	4.55	0.00	3.08	4.76	5.56	4.76	13.51	10.34	7.14	0.00	6.45	6.45	4.08	1.89	10.03	8.15	0.006205	0.262483
N	jcn_only_AD	NISCH	chr3	+	chr3:52514320-52518528;chr3:52515054-52518528;chr3:52515126-52518528	chr3:52514312-52518528					96.55	90.48	92.86	NA	NA	NA	96.61	100.00	100.00	NA	94.12	NA	96.15	100.00	90.91	100.00	98.88	NA	NA	95.65	NA	NA	100.00	NA	100.00	NA	97.06	NA	100.00	NA	NA	100.00	NA	NA	100.00	100.00	96.38	98.28	1.90	0.372572	0.657607
K	intron_retention	IRF3	chr19	-	chr19:50164086-50165204				chr19:50164085-50164086;chr19:50165204-50165205		32.14	28.16	43.18	13.33	12.07	11.11	0.00	0.00	0.00	NA	0.00	NA	6.25	5.88	11.11	NA	4.76	NA	13.73	36.36	16.67	NA	11.90	NA	23.70	38.89	21.82	NA	10.20	20.00	33.33	33.33	17.14	40.00	25.00	45.45	15.44	32.73	17.30	0.727090	1.000000
K	jcn_only_AA	RP11-51F16.8,STRADA	chr17	-	chr17:61784091-61784606	chr17:61784100-61784606		chr17:61784091-61784099	chr17:61784090-61784091		92.86	100.00	94.87	NA	NA	NA	96.97	95.35	93.48	NA	95.45	NA	96.97	97.30	95.24	92.86	93.75	NA	NA	100.00	92.86	NA	95.00	NA	100.00	96.97	91.43	93.33	93.75	100.00	100.00	100.00	NA	88.89	91.30	92.31	98.48	97.13	-1.35	0.352834	0.663989
N	alternative_acceptor	IL10RA	chr11	+	chr11:117860336-117863967;chr11:117860336-117863955;chr11:117860336-117863911	chr11:117860336-117862972		chr11:117862973-117863911;chr11:117863912-117863955;chr11:117863956-117863967	chr11:117863911-117863912;chr11:117863955-117863956;chr11:117863967-117863968		6.38	3.45	6.25	NA	NA	NA	0.93	1.36	0.83	1.10	2.30	0.59	0.99	1.01	1.71	0.69	0.88	0.40	NA	5.10	NA	4.35	6.45	4.91	9.09	5.00	4.82	2.38	5.88	2.90	6.90	6.82	NA	8.86	11.11	5.75	2.22	5.05	2.83	0.768954	0.914285
N	jcn_only_AD	PNISR	chr6	-	chr6:99848188-99848462;chr6:99848188-99850415	chr6:99848188-99848419		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		100.00	100.00	97.06	100.00	100.00	90.91	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	88.24	81.25	NA	100.00	83.33	100.00	100.00	93.18	91.67	100.00	72.22	77.78	83.87	82.35	88.00	100.00	100.00	100.00	94.12	-5.88	0.470995	0.721034
N	jcn_only_AD	SHARPIN	chr8	-	chr8:145158129-145159167;chr8:145158129-145159319;chr8:145158129-145158749;chr8:145158129-145158455	chr8:145158129-145158927		chr8:145158456-145158749;chr8:145158750-145158927;chr8:145158928-145159167;chr8:145159168-145159319	chr8:145158749-145158750;chr8:145158927-145158928;chr8:145159167-145159168;chr8:145159319-145159320		6.25	0.00	11.54	NA	NA	NA	0.00	0.00	0.00	0.00	10.00	NA	7.14	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	5.00	0.00	0.00	NA	8.33	9.52	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.646960	0.818639
K	intron_retention	SHISA5	chr3	-	chr3:48510586-48510759				chr3:48510585-48510586;chr3:48510759-48510760		0.85	0.00	1.66	0.00	0.00	NA	0.00	0.00	0.48	0.00	0.61	1.28	0.58	0.00	1.29	0.00	0.50	2.86	NA	0.00	0.00	3.23	0.00	0.00	0.00	0.00	1.15	0.00	0.00	2.08	1.74	1.27	7.69	0.00	0.00	2.41	0.00	0.00	0.00	0.793239	1.000000
K	alternative_first_exon	MAF1	chr8	+	chr8:145159762-145160542	chr8:145160053-145160542	chr8:145159402-145159761	chr8:145159878-145160052			2.70	0.00	0.00	NA	0.00	NA	0.00	2.78	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	4.55	NA	0.00	4.76	0.00	0.00	5.88	NA	0.00	0.00	0.00	0.00	0.00	4.00	1.85	0.00	0.00	0.00	0.00	0.00	1.35	1.35	0.083102	0.238584
N	cassette	H2AFV	chr7	-	chr7:44875258-44887567;chr7:44875258-44882875	chr7:44875258-44880497;chr7:44880612-44887567,chr7:44880612-44882875		chr7:44880498-44880611			91.94	94.65	97.40	93.10	97.08	95.92	95.65	95.74	97.52	98.75	97.90	100.00	97.72	100.00	95.38	94.29	93.55	95.92	96.67	100.00	96.08	94.34	96.83	95.45	95.16	100.00	96.55	94.44	95.07	94.44	93.33	95.65	96.64	96.20	99.06	93.14	96.15	97.87	1.72	0.648445	0.870529
N	cassette	PCIF1	chr20	+	chr20:44575024-44575901	chr20:44575024-44575711;chr20:44575806-44575901		chr20:44575712-44575805			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_first_exon	ZNF706	chr8	-	chr8:102213972-102217322;chr8:102213972-102218081;chr8:102213972-102216877,chr8:102213972-102214560	chr8:102213972-102217662	chr8:102218082-102218292;chr8:102216878-102217007	chr8:102217663-102217960			95.70	95.89	94.59	92.68	95.45	83.33	91.50	97.18	96.36	90.36	94.42	77.31	96.45	96.83	98.13	92.65	95.43	86.92	100.00	93.88	93.10	91.74	95.92	76.71	100.00	92.45	97.59	93.88	95.45	90.91	93.18	94.29	96.77	90.18	95.51	82.14	96.61	94.79	-1.82	0.244571	0.453476
N	jcn_only_AD	SERPINB1	chr6	-	chr6:2838921-2840652;chr6:2838921-2840678	chr6:2838921-2839568		chr6:2839569-2840652;chr6:2840653-2840678	chr6:2840652-2840653;chr6:2840678-2840679		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.77	0.00	5.97	0.00	1.00	0.19	0.57	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.00	0.62	NA	0.00	1.46	0.00	0.00	0.69	0.00	0.51	0.00	0.00	0.00	0.27	0.00	0.10	0.10	0.988574	0.994768
K	cassette	ATP6V1H	chr8	-	chr8:54714457-54727221	chr8:54714457-54723723;chr8:54723778-54727221		chr8:54723724-54723777			92.65	100.00	96.20	100.00	97.06	NA	97.50	96.53	94.87	98.73	99.39	100.00	96.67	97.01	97.44	100.00	99.09	100.00	70.00	94.00	92.31	98.11	95.96	99.06	NA	95.62	96.88	100.00	100.00	97.14	91.15	96.51	100.00	99.32	98.97	97.60	97.50	94.81	-2.69	0.789153	0.936947
K	cassette	FLII	chr17	-	chr17:18156773-18157392	chr17:18156773-18156857;chr17:18157034-18157392		chr17:18156858-18157033			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	NA	98.36	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	MED13L	chr12	-	chr12:116399204-116401211	chr12:116400311-116401211		chr12:116399204-116400310	chr12:116399203-116399204		0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.12	5.88	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	intron_retention	ZMYND15	chr17	+	chr17:4647403-4647484				chr17:4647402-4647403;chr17:4647484-4647485		1.82	0.00	9.09	NA	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	8.82	2.63	NA	10.00	NA	0.00	1.69	3.57	5.26	7.14	0.00	2.13	4.48	0.00	9.38	5.26	3.45	0.00	1.75	1.75	0.311893	1.000000
K	intron_retention	SEC14L1	chr17	+	chr17:75210102-75212630				chr17:75210101-75210102;chr17:75212630-75212631		85.33	96.20	91.07	92.59	87.80	100.00	92.65	92.86	93.75	86.27	87.69	90.91	95.52	91.23	87.23	86.27	83.54	83.78	100.00	84.09	82.35	91.30	88.89	88.46	100.00	89.29	100.00	83.33	93.18	88.24	87.50	85.00	88.89	93.48	86.36	93.15	95.86	88.40	-7.46	0.041428	1.000000
N	jcn_only_AA	PPP4R1	chr18	-	chr18:9548277-9549194;chr18:9547951-9549194	chr18:9547929-9549194		chr18:9547929-9547950;chr18:9547951-9548276	chr18:9547928-9547929;chr18:9547950-9547951		3.08	0.00	1.72	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.67	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.197425	0.663989
N	jcn_only_AA	CD36	chr7	+	chr7:80303464-80305455;chr7:80303464-80305044;chr7:80303464-80305423	chr7:80303464-80305699		chr7:80305045-80305423;chr7:80305424-80305455;chr7:80305456-80305699	chr7:80305423-80305424;chr7:80305455-80305456;chr7:80305699-80305700		91.67	100.00	75.00	NA	94.23	NA	96.54	96.34	95.83	94.46	95.39	94.80	86.70	100.00	NA	91.67	89.91	93.33	91.18	72.73	98.90	76.60	72.17	72.12	100.00	92.11	80.30	92.25	93.43	95.31	95.00	90.00	90.48	88.68	84.50	87.78	93.86	93.56	-0.31	0.546958	0.782171
N	intron_retention		chr11	-	chr11:117067838-117067945				chr11:117067837-117067838;chr11:117067945-117067946		97.67	100.00	NA	100.00	90.48	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	86.96	NA	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	91.67	88.89	91.30	100.00	86.67	90.48	100.00	100.00	0.00	0.999569	1.000000
N	alternative_donor	RBM26	chr13	-	chr13:79894846-79896483	chr13:79894846-79895368		chr13:79895369-79896483	chr13:79896483-79896484		8.33	4.76	8.70	NA	0.00	NA	0.00	NA	5.88	0.00	0.00	NA	4.55	7.69	4.17	4.55	5.88	NA	0.00	6.25	0.00	9.09	3.45	NA	6.67	7.14	4.35	0.00	4.55	0.00	NA	4.55	0.00	5.00	5.56	0.00	2.27	7.42	5.14	0.010853	0.222554
K	intron_retention	AP1G2	chr14	-	chr14:24029628-24030504				chr14:24029627-24029628;chr14:24030504-24030505		16.67	15.94	25.64	NA	27.27	16.67	0.00	7.69	0.00	NA	0.00	NA	0.00	0.00	8.33	0.00	0.00	0.00	17.65	8.00	9.38	NA	14.29	25.00	22.22	12.50	15.00	18.18	18.18	28.57	7.14	15.91	16.67	29.41	25.00	25.00	16.30	7.85	-8.46	0.840695	1.000000
N	jcn_only_AD	SH3BP5-AS1	chr3	+	chr3:15302392-15305802;chr3:15301826-15305802;chr3:15302094-15305802	chr3:15302090-15305802		chr3:15301826-15302089;chr3:15302090-15302093;chr3:15302094-15302391	chr3:15301825-15301826;chr3:15302089-15302090;chr3:15302093-15302094		100.00	98.85	100.00	96.55	94.64	95.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	98.94	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	94.44	NA	100.00	100.00	98.67	100.00	100.00	100.00	98.89	100.00	1.11	0.060163	0.547879
K	alternative_donor	DBNL	chr7	+	chr7:44092541-44096355	chr7:44092551-44096355		chr7:44092541-44092550	chr7:44092540-44092541		1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	0.00	5.88	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	2.63	0.00	0.00	0.00	1.72	1.43	0.00	0.31	0.31	0.878996	0.969920
N	jcn_only_AA	EDF1	chr9	-	chr9:139743992-139757357;chr9:139756790-139757357;chr9:139757179-139757357;chr9:139756798-139757357	chr9:139756949-139757357		chr9:139743992-139756789;chr9:139756790-139756797;chr9:139756798-139756948;chr9:139756949-139757178	chr9:139743991-139743992;chr9:139756789-139756790;chr9:139756797-139756798;chr9:139756948-139756949		7.84	5.63	6.31	10.33	7.44	6.89	4.18	8.22	5.80	13.36	9.51	9.58	8.05	8.50	7.14	15.51	15.45	12.33	5.86	6.42	5.03	8.92	10.05	7.26	4.72	3.73	5.94	10.96	11.25	7.06	7.42	4.10	3.95	9.84	4.55	7.08	5.17	7.63	2.46	0.118538	0.663989
K	intron_retention	AC006547.15	chr22	-	chr22:20052448-20053018				chr22:20052447-20052448;chr22:20053018-20053019		90.48	84.13	100.00	92.31	88.37	100.00	92.98	95.24	89.29	100.00	100.00	100.00	95.31	94.12	89.29	100.00	98.33	100.00	100.00	88.24	92.59	100.00	96.08	92.31	100.00	100.00	100.00	100.00	100.00	92.86	100.00	91.67	81.82	100.00	100.00	94.12	94.15	94.68	0.53	0.853524	1.000000
K	intron_retention		chrX	+	chrX:23802001-23802410				chrX:23802000-23802001;chrX:23802410-23802411		72.27	48.00	79.08	23.21	39.13	10.17	80.00	71.57	48.88	69.92	65.62	71.96	85.07	72.58	69.35	70.48	62.64	71.72	NA	70.60	42.06	76.07	73.61	80.98	50.00	79.22	77.44	75.14	73.94	63.78	54.98	68.62	NA	80.06	74.20	80.29	65.00	71.92	6.92	0.900183	1.000000
N	jcn_only_AA	RASSF4	chr10	+	chr10:45467297-45477968;chr10:45467297-45477945;chr10:45467297-45472749;chr10:45467297-45471759	chr10:45467297-45477972		chr10:45471760-45472749;chr10:45472750-45477945;chr10:45477946-45477968;chr10:45477969-45477972	chr10:45472749-45472750;chr10:45477945-45477946;chr10:45477968-45477969;chr10:45477972-45477973		4.14	0.00	4.81	NA	NA	NA	4.41	3.54	5.02	4.88	3.95	0.00	2.38	3.88	4.07	5.38	5.75	5.33	NA	3.36	7.32	0.00	5.71	5.26	NA	2.94	4.97	4.35	3.23	2.31	3.57	2.33	0.00	5.26	0.00	2.76	1.19	3.55	2.36	0.175878	0.663989
N	jcn_only_AD	WDFY2	chr13	+	chr13:52327056-52329493;chr13:52328534-52329493	chr13:52325552-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		93.75	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	95.65	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	93.33	87.50	NA	90.00	NA	NA	100.00	97.83	-2.17	0.082107	0.629777
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28847807-28848048;chr16:28847807-28848170;chr16:28847807-28847918;chr16:28847807-28848071	chr16:28847807-28848068		chr16:28847919-28848048;chr16:28848049-28848068;chr16:28848069-28848071;chr16:28848072-28848170	chr16:28848048-28848049;chr16:28848068-28848069;chr16:28848071-28848072;chr16:28848170-28848171		6.78	5.62	4.44	6.00	20.56	10.20	2.70	4.55	13.46	11.54	11.54	16.67	21.28	3.23	12.07	11.76	10.17	11.11	7.69	15.69	12.00	7.69	17.46	21.62	NA	2.63	21.11	2.50	4.92	18.37	4.55	12.07	28.05	7.27	8.82	10.53	7.69	4.55	-3.14	0.251121	0.707267
N	jcn_only_AD	IWS1	chr2	-	chr2:128246812-128247407	chr2:128246812-128247393		chr2:128247394-128247407	chr2:128247407-128247408		8.11	0.00	7.27	3.85	6.25	5.88	0.00	3.12	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	8.11	3.23	11.90	0.00	0.00	4.26	3.03	2.04	0.00	3.45	3.45	2.00	2.74	2.27	0.00	9.38	0.00	4.17	5.66	3.92	0.00	1.56	1.56	0.849944	0.928405
K	alternative_donor	AP2A2	chr11	+	chr11:926089-959436;chr11:932778-959436;chr11:933598-959436	chr11:946964-959436		chr11:926089-932777;chr11:932778-933597;chr11:933598-946963	chr11:926088-926089;chr11:932777-932778;chr11:933597-933598		0.00	6.67	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	6.67	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	3.33	0.00	-3.33	0.181690	0.563271
N	cassette	SLC11A1	chr2	+	chr2:219247826-219251357;chr2:219247099-219251357;chr2:219247099-219249869;chr2:219247794-219249869;chr2:219247826-219249869	chr2:219247826-219249041,chr2:219247794-219249041,chr2:219247099-219249041;chr2:219249089-219249869,chr2:219249089-219251357		chr2:219249042-219249088			73.10	73.08	68.06	NA	75.00	NA	94.37	95.00	91.43	86.27	86.11	81.25	94.51	93.06	91.43	92.06	90.22	86.84	90.00	73.81	80.00	76.47	72.97	75.00	100.00	85.98	80.25	93.10	80.56	91.67	71.43	65.56	69.23	75.51	64.81	73.68	92.19	79.90	-12.29	0.493034	0.776782
K	intron_retention	SLC38A10	chr17	-	chr17:79220474-79220684				chr17:79220473-79220474;chr17:79220684-79220685		12.00	3.77	12.82	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	NA	6.90	7.14	8.70	NA	6.67	0.00	19.05	4.35	3.57	NA	13.33	0.00	0.00	3.33	9.52	10.00	0.00	10.00	5.33	2.17	-3.16	0.563144	1.000000
N	alternative_acceptor	RNH1	chr11	-	chr11:499129-499828;chr11:499601-499828	chr11:499186-499828		chr11:499129-499185;chr11:499186-499600	chr11:499128-499129;chr11:499185-499186		94.52	97.81	92.50	96.63	96.89	96.61	98.29	98.31	97.78	98.43	98.38	100.00	97.91	97.67	96.43	98.05	97.46	100.00	97.27	96.72	96.47	94.74	96.51	96.00	93.00	92.98	90.00	96.72	96.12	96.36	94.44	91.07	94.78	94.97	95.29	95.63	97.54	95.62	-1.92	0.559999	0.828694
K	alternative_acceptor	LIMD2	chr17	-	chr17:61776709-61777391	chr17:61776756-61777391		chr17:61776709-61776755	chr17:61776708-61776709		16.67	14.29	9.68	NA	15.38	NA	7.55	7.41	7.14	6.67	9.88	NA	9.09	8.33	6.25	5.88	10.00	NA	6.25	10.00	10.00	NA	15.62	NA	NA	NA	10.53	0.00	16.67	NA	NA	0.00	14.29	NA	14.29	NA	9.09	9.16	0.07	0.912343	0.973140
K	coord_cassette	N4BP2L2	chr13	-	chr13:33092141-33101544	chr13:33092141-33095509;chr13:33095587-33096318;chr13:33096408-33101544		chr13:33095510-33095586;chr13:33096319-33096407			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.31	100.00	NA	100.00	100.00	94.12	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	90.00	92.86	91.67	100.00	NA	100.00	100.00	0.00	0.373901	0.643829
N	cassette	AKAP8L	chr19	-	chr19:15510222-15511604	chr19:15510222-15511105;chr19:15511170-15511604		chr19:15511106-15511169			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	97.44	98.25	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.23	94.67	90.48	94.59	100.00	100.00	100.00	100.00	0.00	0.794224	0.936947
N	cassette	EIF3I	chr1	+	chr1:32690077-32692003;chr1:32690077-32694099	chr1:32690077-32691771;chr1:32691922-32694099,chr1:32691922-32692003		chr1:32691772-32691921			96.20	100.00	98.00	88.37	95.77	100.00	99.32	98.31	98.15	100.00	98.10	100.00	100.00	98.33	95.61	97.56	98.44	98.53	93.75	93.85	95.83	96.97	97.22	98.26	100.00	94.74	100.00	98.85	98.85	99.03	92.45	92.39	94.44	96.43	97.35	97.42	99.66	95.47	-4.19	0.178158	0.709176
N	cassette	HNRNPA2B1	chr7	-	chr7:26232994-26235466	chr7:26232994-26233194;chr7:26233315-26235466		chr7:26233195-26233314			98.33	100.00	99.37	100.00	99.36	100.00	100.00	100.00	99.67	99.08	98.58	99.06	100.00	100.00	100.00	98.83	99.28	98.80	100.00	96.21	99.24	98.48	99.34	99.36	100.00	100.00	100.00	99.39	100.00	99.52	92.48	95.62	97.87	99.26	100.00	98.97	100.00	99.16	-0.84	0.209890	0.709176
N	alternative_donor	NCAPH2	chr22	+	chr22:50958067-50959393;chr22:50957750-50959393	chr22:50957840-50959393		chr22:50957750-50957839;chr22:50957840-50958066	chr22:50957749-50957750;chr22:50957839-50957840		0.00	0.00	3.33	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	3.70	NA	0.00	5.26	5.00	0.00	7.41	NA	0.00	5.00	4.35	NA	0.00	NA	0.00	3.85	0.00	5.26	0.00	0.00	0.00	2.50	2.50	0.181894	0.563271
N	jcn_only_AD	DNAJC19	chr3	-	chr3:180703785-180704785;chr3:180703785-180704730	chr3:180703785-180704735		chr3:180704731-180704735;chr3:180704736-180704785	chr3:180704735-180704736;chr3:180704785-180704786		0.00	0.00	0.00	NA	0.00	0.00	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AD	NAA60	chr16	+	chr16:3535062-3535466	chr16:3535084-3535466		chr16:3535062-3535083	chr16:3535061-3535062		15.56	16.98	16.13	36.36	22.22	NA	21.05	31.82	31.03	44.12	32.86	18.75	29.41	38.10	40.74	36.73	34.67	32.14	0.00	13.33	21.05	20.00	21.43	40.00	0.00	25.00	25.53	28.57	32.43	26.32	12.20	12.50	13.33	30.43	21.28	32.81	15.16	20.28	5.12	0.186307	0.657607
N	cassette	HNRNPA2B1	chr7	-	chr7:26230081-26232114	chr7:26230081-26230612;chr7:26230749-26232114		chr7:26230613-26230748			91.77	97.53	93.45	94.24	95.04	92.93	100.00	61.54	69.49	55.56	65.00	56.52	73.33	70.97	60.00	69.39	60.87	50.00	95.95	92.36	87.28	92.56	93.08	95.00	95.50	82.42	91.88	95.18	92.31	87.83	90.41	92.33	94.05	92.47	95.52	91.39	95.72	86.41	-9.31	0.121446	0.709176
K	cassette	MTX1	chr1	+	chr1:155180419-155182175	chr1:155180419-155181917;chr1:155182011-155182175		chr1:155181918-155182010			77.78	67.86	75.00	63.64	71.88	69.23	100.00	90.48	94.29	89.47	90.00	NA	96.97	91.67	100.00	100.00	93.33	100.00	83.33	80.00	85.71	NA	90.91	70.00	50.00	87.50	80.00	100.00	79.17	100.00	70.00	84.38	90.00	73.33	84.21	91.30	86.66	83.75	-2.91	0.861779	0.951806
N	cassette	MFSD7	chr4	-	chr4:679701-680320;chr4:678646-680320;chr4:667191-680320	chr4:667191-679877,chr4:678646-679877,chr4:679701-679877;chr4:679944-680320		chr4:679878-679943			20.00	2.38	0.00	8.70	4.55	0.00	68.18	60.00	30.00	54.55	66.67	64.71	61.54	20.00	NA	66.67	66.67	60.00	0.00	21.43	10.00	9.09	9.52	NA	0.00	16.67	NA	21.43	23.53	NA	11.11	20.00	1.28	16.00	7.14	8.33	1.83	20.00	18.17	0.867632	0.954638
N	jcn_only_AD	PSMD1	chr2	+	chr2:232011071-232018277	chr2:232017526-232018277		chr2:232011071-232017525	chr2:232011070-232011071		0.00	0.00	4.29	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.35	4.76	NA	0.00	0.00	0.00	3.33	0.00	0.00	7.55	0.00	2.33	4.11	4.94	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	GUCD1	chr22	-	chr22:24936942-24943875	chr22:24942974-24943875		chr22:24936942-24942973	chr22:24936941-24936942		100.00	100.00	88.89	NA	83.33	NA	100.00	96.55	100.00	95.92	100.00	100.00	100.00	100.00	88.57	92.16	100.00	97.06	50.00	100.00	100.00	80.00	92.00	89.66	NA	78.57	89.66	87.50	100.00	83.33	76.19	80.00	NA	92.31	95.65	100.00	100.00	98.28	-1.72	0.759354	0.910949
K	alternative_acceptor	MAP7D1	chr1	+	chr1:36643803-36644019;chr1:36643803-36644046	chr1:36643803-36644071		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		4.92	0.00	13.11	0.00	9.76	NA	0.00	0.00	0.00	17.50	0.00	0.00	0.00	0.00	10.53	10.34	0.00	0.00	0.00	9.43	11.90	0.00	11.11	0.00	0.00	10.00	6.56	11.11	0.00	0.00	0.00	7.02	11.11	0.00	10.20	0.00	0.00	2.46	2.46	0.431294	0.740994
K	cassette	UBE2B	chr5	+	chr5:133724105-133725915	chr5:133724105-133724667;chr5:133724744-133725915		chr5:133724668-133724743			2.55	5.88	1.69	1.64	0.00	0.00	0.89	1.07	2.19	0.78	1.06	1.17	0.95	1.27	1.39	0.00	0.00	0.45	0.00	1.80	2.94	0.00	0.87	0.78	0.00	2.81	3.21	2.30	1.10	2.56	4.26	2.27	0.00	1.01	2.40	0.90	0.45	2.17	1.73	0.369352	0.709176
N	jcn_only_AA	APBA3	chr19	-	chr19:3751084-3751186	chr19:3751096-3751186		chr19:3751084-3751095	chr19:3751083-3751084		92.86	100.00	96.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	98.25	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.691784	0.864632
N	cassette	METTL5	chr2	-	chr2:170669017-170676070	chr2:170669017-170671986;chr2:170672039-170676070		chr2:170671987-170672038			100.00	100.00	89.47	94.74	96.61	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	96.83	100.00	100.00	100.00	100.00	NA	85.00	100.00	100.00	100.00	97.22	87.50	NA	88.89	89.29	95.00	97.22	100.00	96.41	100.00	3.59	0.078759	0.641134
N	cassette	CD44	chr11	+	chr11:35219794-35223217;chr11:35219794-35223214;chr11:35211613-35226058;chr11:35219794-35236398;chr11:35211613-35223214;chr11:35211613-35223217;chr11:35211613-35236398;chr11:35219794-35226058	chr11:35219794-35222628,chr11:35211613-35222628;chr11:35222743-35236398,chr11:35222743-35226058,chr11:35222743-35223214,chr11:35222743-35223217		chr11:35222629-35222742			0.12	0.00	0.00	0.51	0.00	1.48	0.00	0.40	1.02	4.80	0.48	7.13	0.00	0.32	0.47	2.23	0.24	4.88	0.00	0.05	0.00	1.28	0.26	4.82	0.00	0.08	0.11	1.07	0.00	2.39	0.26	0.17	0.00	0.86	0.00	1.88	0.00	0.19	0.19	0.016732	0.373030
K	intron_retention	EMILIN1	chr2	+	chr2:27308166-27308545				chr2:27308165-27308166;chr2:27308545-27308546		0.00	6.67	3.03	7.69	11.11	NA	3.33	4.00	7.69	0.00	7.41	0.00	NA	NA	NA	NA	NA	NA	4.76	0.00	0.85	10.00	20.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	0.00	3.03	0.00	NA	NA	4.04	0.00	-4.04	0.885913	1.000000
K	intron_retention	CSK	chr15	+	chr15:75093088-75093163				chr15:75093087-75093088;chr15:75093163-75093164		2.95	6.25	3.50	0.00	3.57	NA	0.52	0.53	0.00	0.00	0.59	0.00	0.00	0.00	0.00	0.91	0.70	0.00	2.17	3.21	2.82	4.26	2.38	6.90	1.85	4.70	4.72	0.00	2.63	2.86	6.25	3.70	3.54	4.44	3.82	1.59	2.01	3.08	1.07	0.999376	1.000000
N	cassette	HAUS4,RP11-298I3.5	chr14	-	chr14:23416941-23424308;chr14:23416941-23419522	chr14:23416941-23417076;chr14:23417223-23424308,chr14:23417223-23419522		chr14:23417077-23417222			95.92	94.59	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	NA	94.74	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.869532	0.954868
N	cassette	CD44	chr11	+	chr11:35219794-35236398;chr11:35226188-35229651;chr11:35211613-35229651;chr11:35219794-35229651;chr11:35211613-35236398;chr11:35226188-35236398	chr11:35219794-35227658,chr11:35211613-35227658,chr11:35226188-35227658;chr11:35227791-35229651,chr11:35227791-35236398		chr11:35227659-35227790			0.76	0.00	1.32	6.68	1.57	4.99	0.25	0.65	2.55	11.26	1.12	12.76	0.47	1.41	2.90	12.25	1.64	14.39	0.00	0.80	1.06	7.96	2.53	14.15	0.00	1.32	2.76	12.21	3.29	15.65	0.45	1.33	0.00	4.90	2.08	8.80	0.00	0.78	0.78	0.002578	0.169831
N	alternative_donor	SNHG5	chr6	-	chr6:86387907-86388120;chr6:86387907-86388415	chr6:86387907-86388411		chr6:86388121-86388411;chr6:86388412-86388415	chr6:86388411-86388412;chr6:86388415-86388416		84.21	93.67	91.49	94.44	91.95	97.98	93.18	72.73	76.32	91.49	92.00	97.30	71.43	NA	63.64	73.68	66.67	NA	97.14	85.00	91.49	88.68	92.06	90.74	93.02	60.00	75.00	87.10	88.89	90.91	82.00	86.49	96.77	87.50	86.00	88.89	93.43	82.00	-11.43	0.050732	0.397730
N	alternative_acceptor	DALRD3	chr3	-	chr3:49053306-49053405	chr3:49053319-49053405		chr3:49053306-49053318	chr3:49053305-49053306		41.94	72.15	41.46	66.67	70.97	69.44	36.84	NA	54.55	NA	35.71	NA	50.00	30.00	71.43	62.50	57.14	NA	70.00	47.06	53.85	70.00	64.29	NA	87.28	50.00	58.62	71.43	66.67	66.67	46.43	50.00	76.92	72.00	57.69	47.06	71.08	46.43	-24.65	0.031583	0.558559
K	cassette	TMEM176B	chr7	-	chr7:150490689-150493453	chr7:150490689-150491048;chr7:150491160-150493453		chr7:150491049-150491159			96.20	100.00	96.49	NA	NA	NA	94.97	93.49	94.49	89.67	89.03	93.60	96.13	93.63	93.84	89.32	87.65	90.18	98.83	98.88	92.24	98.63	97.46	98.82	87.54	90.72	89.83	91.55	91.98	91.95	98.86	97.13	98.21	97.83	98.22	97.90	97.17	94.91	-2.25	0.781207	0.934744
K	alternative_last_exon	RP11-216L13.17	chr9	+	chr9:139686811-139693553	chr9:139686811-139687270	chr9:139693554-139693675	chr9:139687271-139687709			93.75	96.70	95.00	100.00	100.00	100.00	98.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	99.04	93.75	98.67	100.00	95.00	100.00	100.00	100.00	96.97	100.00	98.11	100.00	91.67	92.00	95.65	100.00	93.75	96.43	98.93	96.88	-2.06	0.326458	0.523459
N	alternative_acceptor	AKT1	chr14	-	chr14:105241545-105241988	chr14:105241577-105241988		chr14:105241545-105241576	chr14:105241544-105241545		1.49	3.12	1.79	NA	7.69	NA	0.83	0.00	0.00	0.00	0.00	0.00	0.78	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.12	0.00	0.00	2.00	0.00	0.00	2.04	3.57	0.00	3.03	NA	2.63	0.00	2.60	0.80	0.00	-0.80	0.471498	0.774297
K	jcn_only_AA	ANAPC5	chr12	-	chr12:121756155-121756303;chr12:121756228-121756303	chr12:121756208-121756303		chr12:121756155-121756207;chr12:121756208-121756227	chr12:121756154-121756155;chr12:121756207-121756208		6.90	7.84	11.11	12.50	0.00	NA	8.00	0.00	0.00	0.00	1.79	5.56	8.57	0.00	12.20	0.00	0.00	0.00	13.64	0.00	18.37	8.70	7.14	0.00	0.00	NA	0.00	0.00	2.00	0.00	0.00	18.92	13.21	7.69	3.92	12.50	8.29	0.00	-8.29	0.017723	0.537091
K	jcn_only_AA	UFSP2	chr4	-	chr4:186321633-186324647	chr4:186323499-186324647		chr4:186321633-186323498	chr4:186321632-186321633		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.25	0.00	6.25	NA	2.04	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	LPAR6	chr13	-	chr13:48986342-48986556				chr13:48986341-48986342;chr13:48986556-48986557		95.70	89.25	100.00	100.00	87.62	NA	87.50	90.70	86.67	91.67	87.96	NA	91.72	87.29	93.55	91.18	91.30	83.33	100.00	94.92	NA	88.89	87.72	89.66	82.35	92.31	88.89	90.16	86.90	90.00	92.31	90.16	88.00	91.43	92.39	89.58	88.62	92.31	3.69	0.732861	1.000000
N	alternative_acceptor	GPR84	chr12	-	chr12:54757058-54758176;chr12:54757061-54758176;chr12:54756919-54758176;chr12:54757644-54758176;chr12:54757143-54758176	chr12:54757024-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		0.00	8.33	0.90	5.71	5.00	NA	3.85	0.00	0.00	2.78	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.37	0.00	0.00	0.00	NA	0.00	2.19	0.00	0.00	3.12	5.26	2.04	10.00	0.00	0.00	0.00	6.09	0.00	-6.09	0.127764	0.618995
N	alternative_donor	DOCK10	chr2	-	chr2:225630555-225633588;chr2:225630555-225634927	chr2:225630555-225630816		chr2:225630817-225633588;chr2:225633589-225634927	chr2:225633588-225633589;chr2:225634927-225634928		5.63	1.15	9.38	0.00	1.11	0.00	1.27	0.00	0.00	0.00	1.40	0.00	1.85	1.54	0.00	0.00	2.48	0.00	0.00	4.00	0.00	2.94	6.45	5.00	0.00	3.76	5.26	3.45	3.45	0.00	2.13	4.35	0.00	8.77	6.40	3.28	0.57	2.94	2.37	0.049186	0.393754
K	cassette	LUC7L	chr16	-	chr16:258188-270647	chr16:258188-258599;chr16:258664-270647		chr16:258600-258663			0.00	12.50	9.76	8.70	9.09	5.88	8.33	0.00	0.00	0.00	0.00	0.00	8.70	NA	3.57	0.00	0.00	0.00	23.08	4.76	23.81	10.34	10.00	7.69	6.67	12.00	6.82	9.68	13.04	6.67	0.00	9.30	16.67	4.65	7.89	6.67	10.60	0.00	-10.60	0.025066	0.412736
N	jcn_only_AA	PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50362345;chr19:50361911-50363350	chr19:50361911-50363242		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		97.10	96.24	93.15	98.31	96.45	97.83	96.23	95.00	100.00	95.00	94.55	93.33	98.67	100.00	100.00	97.14	95.83	100.00	96.25	97.78	99.08	93.33	100.00	100.00	96.98	93.33	97.40	96.77	98.48	94.00	100.00	100.00	97.06	92.11	98.33	100.00	96.62	97.44	0.82	0.806260	0.918378
K	intron_retention		chr7	+	chr7:99688278-99688524				chr7:99688277-99688278;chr7:99688524-99688525		7.50	1.00	3.17	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	1.49	6.90	0.00	0.00	0.00	0.00	1.61	0.00	0.00	4.35	0.00	3.23	1.85	1.92	0.00	0.00	0.00	0.886781	1.000000
K	intron_retention	SLC26A6	chr3	-	chr3:48664486-48665378				chr3:48664485-48664486;chr3:48665378-48665379		42.50	17.14	37.50	NA	38.46	NA	0.00	NA	6.67	NA	NA	NA	NA	NA	21.43	NA	NA	NA	31.25	37.50	25.00	NA	24.00	NA	55.56	45.45	40.35	NA	36.84	NA	43.33	35.44	25.93	41.67	50.00	29.41	25.93	42.91	16.98	0.495457	1.000000
N	alternative_last_exon	LRCH4	chr7	-	chr7:100171980-100173327,chr7:100172033-100173327;chr7:100171024-100173327	chr7:100172928-100173327	chr7:100170920-100171023	chr7:100172283-100172927			70.67	22.41	61.54	39.13	32.03	27.59	18.75	74.67	32.69	25.00	22.22	41.46	25.00	68.24	46.15	22.22	33.33	63.16	12.90	67.74	30.17	45.83	46.75	52.17	12.24	69.33	48.09	58.62	31.75	45.24	60.54	43.83	11.86	62.50	45.16	66.67	15.82	68.78	52.96	0.000000	0.000006
K	intron_retention	TMEM18	chr2	-	chr2:675631-677288				chr2:675630-675631;chr2:677288-677289		0.00	0.00	0.00	0.00	2.27	0.00	1.79	3.85	1.75	0.00	0.00	0.00	2.22	3.33	3.12	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.70	2.22	8.33	0.00	0.00	3.33	2.17	0.00	0.00	0.00	2.08	0.00	3.33	3.33	0.611652	1.000000
K	jcn_only_AA	CHKB,CHKB-CPT1B	chr22	-	chr22:51018232-51018402	chr22:51018260-51018402		chr22:51018232-51018259	chr22:51018231-51018232		78.67	75.51	80.95	81.25	74.16	79.10	93.55	90.48	89.66	93.75	90.91	100.00	86.49	94.29	91.94	87.50	85.71	100.00	81.44	71.83	77.08	82.61	78.95	82.14	72.28	83.84	84.21	73.81	85.07	78.57	77.78	72.78	76.07	75.34	75.00	87.14	78.75	81.25	2.50	0.692999	0.864632
N	alternative_donor	HMGN3	chr6	-	chr6:79911444-79911992;chr6:79911444-79911785;chr6:79911444-79911810;chr6:79911444-79911772	chr6:79911444-79912033		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		71.43	74.81	52.78	65.85	70.30	70.59	76.77	68.18	55.77	63.21	63.31	59.83	70.37	52.94	59.57	67.14	64.37	68.57	75.27	63.64	69.89	73.33	72.92	73.21	69.66	56.25	51.92	75.00	67.80	69.72	53.85	61.70	77.50	67.92	64.06	70.89	75.04	59.95	-15.09	0.007667	0.211749
K	intron_retention	TNFAIP2	chr14	+	chr14:103590289-103592646				chr14:103590288-103590289;chr14:103592646-103592647		38.46	21.95	20.20	NA	NA	6.67	4.17	2.94	2.08	1.47	0.00	3.11	6.94	4.55	3.45	2.50	2.08	2.62	NA	27.27	25.00	18.97	6.67	20.62	17.31	32.31	16.98	17.02	6.25	14.95	21.21	22.39	NA	19.35	19.12	19.35	12.12	24.24	12.12	0.443332	1.000000
K	intron_retention		chr7	-	chr7:150774489-150774707				chr7:150774488-150774489;chr7:150774707-150774708		16.22	18.97	16.67	31.71	19.44	27.42	0.00	0.00	6.67	4.00	4.44	0.00	5.88	0.00	4.55	5.00	5.00	0.00	19.15	15.79	9.59	40.00	16.36	23.81	17.44	20.00	16.22	20.83	21.28	26.92	25.00	23.68	13.83	25.00	20.00	22.22	15.64	16.00	0.37	0.780005	1.000000
K	cassette	POLR2G	chr11	+	chr11:62529377-62530338	chr11:62529377-62530013;chr11:62530215-62530338		chr11:62530014-62530214			3.37	0.93	5.56	3.45	4.21	0.00	2.80	4.08	2.41	0.00	3.53	0.00	2.78	3.45	3.12	2.06	1.89	2.08	1.79	3.57	1.18	5.88	3.67	0.00	6.25	3.33	3.51	3.33	3.09	2.27	4.55	6.38	3.39	3.70	6.67	4.69	2.79	3.51	0.72	0.377833	0.709410
K	cassette	HSD17B14	chr19	-	chr19:49316606-49316919	chr19:49316606-49316712;chr19:49316810-49316919		chr19:49316713-49316809			74.19	76.24	58.33	73.08	69.30	78.72	83.33	84.21	85.71	85.71	87.50	81.82	87.10	80.00	NA	89.47	78.95	94.74	80.00	76.00	76.06	81.40	68.32	90.91	70.30	68.18	86.21	76.60	78.89	81.25	59.32	70.00	71.84	81.63	79.31	84.75	78.12	75.09	-3.03	0.344700	0.709176
K	alternative_acceptor	SNAP47	chr1	+	chr1:227954785-227963489;chr1:227954785-227958271	chr1:227954785-227968227		chr1:227958272-227963489;chr1:227963490-227968227	chr1:227963489-227963490;chr1:227968227-227968228		94.12	96.30	93.33	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	95.24	NA	100.00	NA	96.43	NA	100.00	100.00	100.00	95.65	100.00	90.00	96.15	85.71	100.00	100.00	0.00	0.620332	0.854460
K	alternative_donor	DNAJC17	chr15	-	chr15:41060261-41065924	chr15:41060261-41062130		chr15:41062131-41065924	chr15:41065924-41065925		7.69	2.82	20.00	0.00	5.88	0.00	6.67	0.00	0.00	0.00	5.00	NA	5.26	NA	9.09	0.00	4.55	NA	1.27	6.25	2.78	0.00	11.36	NA	2.97	4.76	10.00	5.88	7.41	0.00	6.67	15.79	1.47	7.69	12.50	9.09	2.90	6.25	3.35	0.335764	0.650093
K	alternative_donor	DBNDD2,SYS1-DBNDD2	chr20	+	chr20:44037579-44038571	chr20:44037677-44038571		chr20:44037579-44037676	chr20:44037578-44037579		0.00	3.90	1.40	0.00	1.33	NA	1.72	0.00	0.00	8.00	1.37	5.00	1.92	1.39	4.08	5.00	2.04	0.00	0.00	2.00	1.25	NA	3.92	NA	0.00	0.00	1.27	4.35	0.00	0.00	0.00	1.45	0.00	0.00	2.56	0.00	0.86	0.00	-0.86	0.377078	0.654097
K	cassette	POLR2H	chr3	+	chr3:184083015-184085964	chr3:184083015-184084504;chr3:184084589-184085964		chr3:184084505-184084588			100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.33	100.00	100.00	93.33	93.75	NA	100.00	100.00	96.88	100.00	100.00	100.00	96.43	100.00	97.44	100.00	100.00	100.00	100.00	100.00	0.00	0.740176	0.912464
K	intron_retention		chr14	+	chr14:103596753-103597388				chr14:103596752-103596753;chr14:103597388-103597389		0.00	3.45	0.35	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.11	0.00	0.00	0.05	8.33	0.00	0.00	0.00	0.00	0.42	6.25	0.98	0.00	0.00	0.00	0.41	0.00	1.35	18.75	0.80	1.37	0.43	4.85	0.00	-4.85	0.292200	1.000000
N	jcn_only_AD	PCK2	chr14	+	chr14:24568930-24571961	chr14:24569423-24571961					100.00	100.00	100.00	NA	100.00	NA	97.14	100.00	100.00	90.48	89.66	100.00	100.00	96.94	98.36	100.00	89.66	83.33	96.30	98.95	97.01	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	0.00	0.647288	0.818639
N	alternative_acceptor	TLN1	chr9	-	chr9:35717784-35718808	chr9:35718404-35718808		chr9:35717784-35718403	chr9:35717783-35717784		2.44	6.67	4.13	NA	NA	NA	0.47	0.41	0.00	0.00	0.46	0.00	0.00	0.00	1.15	0.00	0.56	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.50	2.35	1.35	0.00	0.00	NA	0.00	2.44	0.00	1.72	2.67	1.49	0.23	0.20	-0.03	0.554501	0.826359
N	cassette	DERL1	chr8	-	chr8:124031486-124034923;chr8:124027826-124054209	chr8:124027826-124033686,chr8:124031486-124033686;chr8:124033740-124054209,chr8:124033740-124034923		chr8:124033687-124033739			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	97.44	100.00	NA	100.00	100.00	100.00	100.00	100.00	90.70	93.62	100.00	100.00	96.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_last_exon	MVB12A	chr19	+	chr19:17534877-17540446;chr19:17534877-17544208;chr19:17534877-17535429	chr19:17534877-17535739	chr19:17544209-17544533;chr19:17535430-17535486	chr19:17535740-17536148			20.51	14.49	16.13	18.18	21.43	40.91	0.00	0.00	5.56	0.00	3.45	0.00	0.00	0.00	0.00	6.67	0.00	0.00	15.22	14.29	13.33	NA	6.25	NA	23.19	9.09	8.33	NA	5.26	18.75	21.74	23.08	27.08	15.38	11.76	21.43	14.86	11.69	-3.17	0.702507	0.811592
N	jcn_only_AA	HDAC10,MAPK12	chr22	-	chr22:50684195-50684338;chr22:50684166-50684338	chr22:50684257-50684338		chr22:50684166-50684194;chr22:50684195-50684256	chr22:50684165-50684166;chr22:50684194-50684195		90.91	92.86	100.00	94.74	89.36	93.94	93.33	NA	100.00	NA	83.33	NA	100.00	NA	91.67	100.00	90.91	90.00	93.88	100.00	92.31	NA	90.91	NA	89.00	90.00	100.00	NA	94.12	100.00	100.00	96.55	92.06	84.62	90.00	91.67	93.09	95.45	2.36	0.610522	0.820792
N	jcn_only_AA	CDC16	chr13	+	chr13:115030716-115037658;chr13:115030716-115035037;chr13:115030716-115037645	chr13:115030716-115037752		chr13:115035038-115037645;chr13:115037646-115037658;chr13:115037659-115037752	chr13:115037645-115037646;chr13:115037658-115037659;chr13:115037752-115037753		12.12	1.02	0.00	5.41	4.76	0.00	0.00	0.00	0.00	0.00	6.12	0.00	0.00	4.55	0.00	5.56	6.12	0.00	13.89	5.26	7.27	0.00	4.17	11.11	0.00	11.11	2.17	0.00	5.56	4.00	0.00	10.00	10.17	3.85	7.69	2.78	0.51	4.90	4.39	0.697509	0.866530
N	intron_retention		chr7	+	chr7:44808824-44809053				chr7:44808823-44808824;chr7:44809053-44809054		83.33	90.24	91.04	77.27	82.14	59.09	NA	68.75	75.00	NA	NA	NA	NA	71.43	71.43	60.00	NA	NA	69.23	73.08	70.15	81.25	91.67	84.62	91.18	74.19	81.82	76.47	80.00	61.54	85.37	85.85	79.07	84.00	83.33	81.82	84.66	73.63	-11.02	0.966127	1.000000
K	intron_retention	RP11-758P17.2	chr7	+	chr7:100033085-100034005				chr7:100033084-100033085;chr7:100034005-100034006		100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	91.67	NA	100.00	NA	100.00	92.86	93.75	100.00	100.00	NA	100.00	100.00	94.29	NA	90.91	NA	100.00	100.00	100.00	100.00	92.00	NA	96.43	100.00	100.00	100.00	100.00	91.67	100.00	100.00	0.00	0.363774	1.000000
N	alternative_acceptor	PARVB	chr22	+	chr22:44532399-44533640;chr22:44532399-44535877;chr22:44532399-44534863	chr22:44532399-44536003		chr22:44533641-44534863;chr22:44534864-44535877;chr22:44535878-44536003	chr22:44534863-44534864;chr22:44535877-44535878;chr22:44536003-44536004		100.00	99.34	97.01	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.00	100.00	100.00	100.00	100.00	100.00	100.00	96.23	98.88	93.48	100.00	100.00	96.49	97.83	100.00	100.00	100.00	100.00	100.00	96.49	98.77	98.88	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	SNAPIN	chr1	+	chr1:153631661-153631923				chr1:153631660-153631661;chr1:153631923-153631924		13.33	0.00	7.69	NA	7.14	0.00	0.00	1.64	1.82	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	NA	3.03	6.25	11.11	6.82	11.43	NA	6.38	7.84	4.76	5.88	4.00	4.55	8.57	0.00	9.09	5.56	10.26	0.00	3.79	3.79	0.177974	1.000000
K	intron_retention		chr14	-	chr14:24737627-24737719				chr14:24737626-24737627;chr14:24737719-24737720		4.76	0.00	6.25	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	12.50	4.35	NA	12.50	NA	0.00	3.70	7.14	0.00	0.00	0.00	5.00	10.00	7.69	NA	NA	10.53	0.00	4.23	4.23	0.480360	1.000000
K	jcn_only_AA	CDV3	chr3	+	chr3:133305567-133306002;chr3:133305567-133307196;chr3:133305567-133306005	chr3:133305567-133306739		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		19.35	0.00	31.30	0.00	2.22	0.00	29.07	25.14	23.65	32.12	34.93	36.93	36.70	27.49	36.48	28.32	43.38	47.84	0.00	24.62	4.55	26.72	24.11	27.66	0.00	18.18	21.69	15.66	16.67	7.97	4.92	17.57	0.00	29.63	28.43	25.62	0.00	21.98	21.98	0.283826	0.663989
N	alternative_acceptor	SCN1B	chr19	+	chr19:35524644-35530020;chr19:35524644-35528066;chr19:35524644-35530101	chr19:35524644-35525948		chr19:35525949-35528066;chr19:35528067-35530020;chr19:35530021-35530101	chr19:35528066-35528067;chr19:35530020-35530021;chr19:35530101-35530102		7.41	0.00	14.95	8.00	0.00	8.33	0.00	6.25	2.78	0.00	0.00	9.09	0.00	4.17	2.99	2.22	3.70	8.33	0.00	13.64	5.88	11.11	3.33	19.51	0.00	12.50	8.05	7.14	2.78	11.54	7.89	9.86	0.00	12.50	4.17	19.74	0.00	7.65	7.65	0.002223	0.316050
K	alternative_donor	GABARAP	chr17	-	chr17:7144780-7145559	chr17:7144780-7144919		chr17:7144920-7145559	chr17:7145559-7145560		96.10	95.93	96.08	96.43	96.00	97.14	96.86	98.21	98.81	96.77	95.05	98.08	99.44	97.41	97.26	96.97	96.47	100.00	98.05	98.40	96.36	98.13	96.84	98.17	100.00	97.28	95.95	99.02	97.64	96.88	96.80	96.50	94.34	96.88	96.43	96.73	97.45	97.34	-0.11	0.943237	0.984606
K	intron_retention	TTLL4	chr2	+	chr2:219617697-219617837				chr2:219617696-219617697;chr2:219617837-219617838		25.00	33.33	13.33	NA	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	NA	0.00	21.43	NA	0.00	6.90	NA	NA	0.00	0.00	NA	7.69	NA	7.69	14.29	7.14	4.35	15.22	NA	0.00	14.56	14.56	0.936023	1.000000
N	jcn_only_AA	CIB1	chr15	-	chr15:90775680-90776900;chr15:90776441-90776900;chr15:90775578-90776900;chr15:90775660-90776900	chr15:90775560-90776900		chr15:90775560-90775577;chr15:90775578-90775659;chr15:90775660-90775679;chr15:90775680-90776440	chr15:90775559-90775560;chr15:90775577-90775578;chr15:90775659-90775660;chr15:90775679-90775680		95.17	98.23	92.41	100.00	96.45	98.55	100.00	98.08	98.46	100.00	100.00	100.00	99.38	100.00	99.03	99.16	100.00	100.00	97.22	100.00	98.06	97.10	95.86	95.08	100.00	96.34	93.85	98.72	97.44	98.73	95.60	95.86	95.54	94.52	96.15	94.02	98.81	97.21	-1.59	0.466463	0.727786
N	jcn_only_AA	CCNH	chr5	-	chr5:86688722-86690860;chr5:86690302-86690860	chr5:86690298-86690860		chr5:86688722-86690297;chr5:86690298-86690301	chr5:86688721-86688722;chr5:86690297-86690298		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.54	0.00	6.67	2.22	0.00	0.00	4.17	1.39	2.00	2.00	0.00	0.00	0.00	0.00	0.421413	0.691465
K	jcn_only_AD	HSD17B11,NFXL1	chr4	-	chr4:88278569-88293860	chr4:88278569-88287084		chr4:88287085-88293860	chr4:88293860-88293861		2.46	30.43	0.00	NA	0.00	NA	1.94	0.82	4.65	0.00	0.00	0.00	0.99	0.00	1.45	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	1.92	0.00	1.14	0.99	0.00	-0.99	0.361963	0.657607
N	alternative_donor	ANPEP	chr15	-	chr15:90344839-90346413;chr15:90344839-90346469;chr15:90344839-90345637	chr15:90344839-90344991		chr15:90344992-90345637;chr15:90345638-90346413;chr15:90346414-90346469	chr15:90345637-90345638;chr15:90346413-90346414;chr15:90346469-90346470		0.18	0.00	0.75	1.77	0.78	7.50	0.00	0.07	0.13	0.36	0.38	0.44	0.23	0.18	0.65	1.37	0.58	2.03	0.00	0.13	0.53	0.80	0.55	1.42	0.00	0.37	0.77	1.41	1.13	1.83	0.17	0.24	0.00	1.65	0.92	2.61	0.00	0.17	0.17	0.027554	0.322430
K	jcn_only_AA	DYRK4	chr12	+	chr12:4721885-4722680	chr12:4721885-4722677		chr12:4722678-4722680	chr12:4722680-4722681		75.00	75.00	60.00	70.73	68.09	67.35	76.67	61.54	65.00	68.42	63.64	68.42	78.05	80.00	62.50	70.00	71.70	71.79	73.86	66.67	74.29	76.00	68.18	61.40	62.82	78.05	72.73	75.00	80.95	72.94	55.88	64.00	66.20	63.89	72.73	66.67	74.43	70.84	-3.59	0.596754	0.812695
K	coord_cassette	ANXA2	chr15	-	chr15:60678286-60689456	chr15:60678286-60685236;chr15:60685640-60688349;chr15:60688627-60689456		chr15:60685237-60685639;chr15:60688350-60688626			0.00	0.00	0.00	4.17	0.00	10.00	0.00	0.00	0.00	0.40	1.51	0.47	0.00	0.00	0.00	0.37	0.00	0.00	0.00	0.00	0.00	0.46	0.00	0.36	NA	0.53	0.00	0.43	0.86	0.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.643829
N	intron_retention		chr20	-	chr20:23352041-23352134				chr20:23352040-23352041;chr20:23352134-23352135		100.00	83.64	100.00	NA	96.83	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	90.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	96.77	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.343430	1.000000
K	intron_retention		chr8	+	chr8:24209566-24211282				chr8:24209565-24209566;chr8:24211282-24211283		1.04	0.00	3.15	0.00	1.20	0.00	1.92	5.41	0.00	0.00	0.00	2.13	2.27	0.00	3.70	0.00	0.00	0.00	0.83	1.04	1.37	1.56	0.71	1.06	0.00	2.13	3.10	8.33	1.92	2.44	1.83	1.98	0.00	3.37	1.11	1.36	0.41	1.44	1.02	0.885654	1.000000
N	alternative_acceptor	MMP14	chr14	+	chr14:23306135-23310699;chr14:23306135-23306389	chr14:23306135-23308336		chr14:23306390-23308336;chr14:23308337-23310699	chr14:23308336-23308337;chr14:23310699-23310700		0.08	0.00	0.26	6.25	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.35	0.26	0.30	0.00	0.10	0.11	0.42	0.00	0.92	0.00	0.00	0.00	0.35	0.24	0.22	0.00	0.00	0.00	0.177966	0.660713
N	jcn_only_AD	ARHGAP4,NAA10	chrX	-	chrX:153198038-153199395;chrX:153198038-153199355	chrX:153198038-153199413		chrX:153199356-153199395;chrX:153199396-153199413	chrX:153199395-153199396;chrX:153199413-153199414		0.00	0.00	0.00	0.00	1.92	0.00	4.35	0.00	0.00	0.00	4.62	6.90	1.35	7.69	0.00	1.49	0.00	2.86	5.06	0.00	2.33	0.00	1.72	0.00	0.00	NA	0.00	0.00	1.96	5.88	NA	20.00	5.97	5.00	3.12	8.00	2.85	0.00	-2.85	0.711342	0.849321
K	jcn_only_AA	RMDN1	chr8	-	chr8:87484709-87487048	chr8:87486588-87487048		chr8:87484709-87486587	chr8:87484708-87484709		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	79.03	100.00	100.00	NA	76.19	NA	69.70	100.00	97.14	78.57	84.62	82.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.183412	0.663989
K	intron_retention	GUK1	chr1	+	chr1:228335246-228335315				chr1:228335245-228335246;chr1:228335315-228335316		2.17	2.26	3.68	1.67	1.08	2.12	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.55	0.45	0.40	0.25	0.00	2.23	4.40	2.13	2.40	1.30	3.90	1.67	1.50	1.30	1.49	0.37	1.11	7.57	6.40	3.52	1.64	1.91	2.06	1.95	1.83	-0.11	0.650088	1.000000
K	cassette	RBCK1	chr20	+	chr20:389424-398169;chr20:389424-391055	chr20:389424-390524;chr20:390670-398169,chr20:390670-391055		chr20:390525-390669			90.12	100.00	88.64	93.75	87.10	80.28	94.23	96.53	91.87	82.86	84.09	82.35	97.87	97.04	98.35	81.48	81.25	88.89	94.12	93.68	93.55	88.89	100.00	93.83	100.00	99.06	90.24	93.75	93.94	89.57	95.08	94.34	100.00	92.59	100.00	93.58	98.94	95.81	-3.13	0.185100	0.709176
K	cassette	PHC2	chr1	-	chr1:33797064-33797875	chr1:33797064-33797225;chr1:33797301-33797875		chr1:33797226-33797300			1.45	0.00	3.21	NA	0.00	NA	0.00	1.19	1.83	2.44	4.12	9.09	0.00	2.22	1.56	2.53	1.80	NA	NA	2.78	4.17	0.00	1.89	6.25	0.00	1.64	1.66	0.00	1.23	0.00	5.26	6.25	NA	6.38	1.27	2.04	0.00	1.93	1.93	0.010862	0.314700
K	cassette	APP	chr21	-	chr21:27269986-27284052	chr21:27269986-27277335;chr21:27277390-27284052		chr21:27277336-27277389			84.24	69.23	76.34	69.23	71.05	NA	75.18	84.21	76.68	72.04	67.76	76.53	79.90	86.52	78.50	74.67	72.16	70.77	NA	79.22	81.13	73.81	75.00	74.78	100.00	80.60	73.09	74.14	69.72	69.23	77.63	67.02	NA	73.77	71.11	68.53	77.54	82.41	4.86	0.892823	0.967641
N	alternative_donor	SP100	chr2	+	chr2:231328627-231328781;chr2:231327924-231328781	chr2:231327234-231328781		chr2:231327234-231327923;chr2:231327924-231328626	chr2:231327233-231327234;chr2:231327923-231327924		97.10	98.08	95.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.83	98.54	99.16	99.22	100.00	100.00	100.00	98.65	100.00	100.00	99.37	100.00	96.55	94.92	96.63	96.88	99.55	98.37	97.97	100.00	96.36	96.43	98.41	100.00	98.60	-1.40	0.111041	0.520337
K	intron_retention	DOK3	chr5	-	chr5:176931917-176932011				chr5:176931916-176931917;chr5:176932011-176932012		4.92	0.00	6.90	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.64	NA	8.33	1.92	5.13	NA	8.93	NA	5.56	4.84	4.13	0.00	2.33	NA	5.88	4.48	0.00	0.00	8.77	NA	0.00	3.38	3.38	0.637398	1.000000
N	cassette	LILRB5	chr19	-	chr19:54756392-54757880;chr19:54756267-54757880	chr19:54756392-54756733,chr19:54756267-54756733;chr19:54756851-54757880		chr19:54756734-54756850			100.00	97.50	NA	100.00	97.14	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.77	100.00	96.77	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.55	98.75	100.00	91.67	NA	100.00	100.00	97.50	100.00	100.00	100.00	0.00	0.783561	0.935383
N	alternative_acceptor	PPP1R12C	chr19	-	chr19:55607523-55607629	chr19:55607547-55607629		chr19:55607523-55607546	chr19:55607522-55607523		100.00	100.00	94.29	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	95.35	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.177322	0.660713
N	alternative_donor	STAB1	chr3	+	chr3:52548513-52548716	chr3:52548593-52548716		chr3:52548513-52548592	chr3:52548512-52548513		1.98	7.27	2.35	NA	3.85	4.00	0.52	0.00	0.00	0.00	0.34	0.00	0.84	0.00	0.00	0.00	0.30	0.00	3.75	1.45	NA	0.00	2.32	0.69	3.52	0.00	2.15	0.50	2.50	0.00	0.00	0.00	5.08	0.61	1.29	0.44	3.63	0.00	-3.63	0.037177	0.352241
K	intron_retention		chr19	+	chr19:45515535-45525310				chr19:45515534-45515535;chr19:45525310-45525311		7.27	7.69	2.00	17.86	10.00	57.89	0.00	0.00	0.00	2.41	0.00	3.19	5.00	0.78	0.30	2.04	1.52	2.78	25.00	3.33	7.84	7.89	3.64	1.96	NA	0.00	1.94	2.50	0.00	5.88	3.28	1.75	15.38	5.56	2.00	5.66	7.69	2.03	-5.66	0.481762	1.000000
N	jcn_only_AD	CLASRP	chr19	+	chr19:45571313-45571677;chr19:45571379-45571677	chr19:45571317-45571677		chr19:45571313-45571316;chr19:45571317-45571378	chr19:45571312-45571313;chr19:45571316-45571317		79.25	83.72	79.59	79.55	83.56	81.82	50.00	60.00	50.00	33.33	30.77	NA	54.17	70.59	56.52	38.89	28.57	NA	80.91	76.92	67.21	61.11	68.09	82.14	83.33	74.07	70.45	72.22	52.63	69.57	85.42	76.34	86.27	71.05	80.56	75.00	82.12	75.50	-6.62	0.867233	0.931449
K	intron_retention		chr1	+	chr1:155289480-155289584				chr1:155289479-155289480;chr1:155289584-155289585		4.76	1.18	0.84	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	3.29	0.00	1.14	0.00	0.00	0.00	1.75	0.00	0.00	0.00	7.89	2.74	0.00	0.00	0.00	1.39	0.00	3.54	3.54	0.202921	1.000000
K	alternative_last_exon	RNASE1	chr14	-	chr14:21270156-21270955,chr14:21270253-21270955	chr14:21270479-21270955,chr14:21270491-21270955	chr14:21269553-21270155	chr14:21270408-21270478			1.56	1.00	1.38	0.69	0.94	0.34	6.17	4.92	4.02	3.26	3.33	3.50	5.02	3.41	2.45	4.63	2.61	2.94	0.48	1.23	1.41	1.69	1.50	1.66	0.84	3.68	1.95	3.38	3.34	2.75	1.23	1.15	0.57	1.82	1.69	1.59	0.92	2.49	1.57	0.796131	0.878815
K	intron_retention	CARD8	chr19	-	chr19:48744321-48753007				chr19:48744320-48744321;chr19:48753007-48753008		0.00	0.00	13.64	NA	12.50	NA	0.00	0.00	NA	NA	5.88	NA	6.25	0.00	9.09	NA	0.00	NA	6.67	8.33	NA	NA	NA	NA	NA	0.00	9.09	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.825652	1.000000
K	jcn_only_AD	CLDND1,DALRD3	chr3	-	chr3:49053141-49053251	chr3:49053141-49053236		chr3:49053237-49053251	chr3:49053251-49053252		73.68	84.78	64.29	64.29	82.93	56.25	92.31	NA	NA	NA	75.00	NA	NA	NA	NA	NA	NA	NA	64.86	90.00	69.44	NA	83.33	NA	73.68	58.33	67.74	NA	73.33	54.55	80.00	81.82	70.00	75.00	71.43	92.31	73.68	76.84	3.16	0.851725	0.928405
K	intron_retention		chr19	+	chr19:1274440-1274647				chr19:1274439-1274440;chr19:1274647-1274648		35.53	18.09	31.43	19.69	20.82	17.50	15.79	16.67	14.29	NA	21.43	NA	16.00	30.77	24.24	31.25	18.75	NA	18.27	22.64	21.10	32.00	28.70	30.30	15.83	19.23	22.56	20.83	30.11	20.00	19.66	21.53	20.24	15.56	25.40	17.24	17.05	21.15	4.10	0.144000	1.000000
K	jcn_only_AD	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31500689-31503143	chr6:31500689-31502262		chr6:31502263-31503143	chr6:31503143-31503144		4.76	5.10	5.38	0.00	7.84	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	5.26	2.90	0.00	0.00	0.00	3.03	4.84	5.06	14.29	7.14	11.11	0.00	3.92	3.45	8.57	6.38	7.69	5.41	0.00	5.80	6.98	3.70	0.00	1.51	4.80	3.29	0.246463	0.657607
N	coord_cassette	UFD1L	chr22	-	chr22:19455527-19466605	chr22:19455527-19459209;chr22:19459332-19462590;chr22:19462624-19466605		chr22:19459210-19459331;chr22:19462591-19462623			80.95	100.00	100.00	83.33	95.24	NA	88.24	84.62	88.24	90.00	100.00	88.89	100.00	100.00	100.00	96.88	93.75	94.74	100.00	90.00	88.89	100.00	100.00	100.00	NA	95.00	91.30	100.00	90.00	84.62	83.33	94.44	100.00	100.00	92.00	95.45	100.00	87.31	-12.69	0.050510	0.643829
N	jcn_only_AA	EIF4A1,RP11-186B7.4,SENP3-EIF4A1	chr17	+	chr17:7478577-7479841;chr17:7478577-7479628	chr17:7478577-7479847		chr17:7479629-7479841;chr17:7479842-7479847	chr17:7479841-7479842;chr17:7479847-7479848		7.51	9.04	7.20	4.59	3.79	5.73	8.30	8.66	6.11	6.45	6.70	7.65	8.03	8.69	8.42	5.82	8.07	6.34	5.00	6.17	6.71	3.23	4.21	4.41	2.56	8.39	7.40	3.53	4.50	4.91	5.62	6.81	6.47	3.91	3.95	3.53	7.25	7.95	0.70	0.432324	0.701542
K	alternative_last_exon	ZFAND6	chr15	+	chr15:80415143-80423527;chr15:80415143-80429821	chr15:80415143-80423521	chr15:80429822-80430735	chr15:80423522-80423859			98.04	94.44	98.59	85.71	92.59	NA	98.18	100.00	100.00	98.77	98.98	98.08	96.55	97.67	100.00	97.18	98.84	98.18	60.00	97.83	95.65	97.44	97.67	96.67	NA	97.92	98.28	96.77	97.37	95.00	90.91	98.18	NA	98.48	98.15	98.28	95.50	97.88	2.38	0.364376	0.535374
K	intron_retention	PTBP1	chr19	+	chr19:804209-804291				chr19:804208-804209;chr19:804291-804292		6.45	13.33	7.55	NA	NA	NA	1.10	1.64	1.49	2.97	0.88	0.00	0.00	0.00	2.56	1.41	0.73	0.00	NA	9.38	NA	3.23	4.35	5.45	0.00	0.00	0.00	0.00	0.00	NA	12.50	12.12	NA	5.26	4.55	0.00	0.55	4.04	3.50	0.976026	1.000000
N	cassette	THAP4	chr2	-	chr2:242524141-242542384	chr2:242524141-242541310;chr2:242541415-242542384		chr2:242541311-242541414			100.00	100.00	90.91	100.00	93.88	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SGSM2	chr17	+	chr17:2282498-2282725;chr17:2282498-2283558	chr17:2282498-2282705		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		0.00	3.03	0.00	6.67	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.56	0.00	7.41	NA	0.00	NA	5.88	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	6.25	0.00	0.00	0.00	4.29	0.00	-4.29	0.033306	0.560254
K	intron_retention	NAPRT	chr8	-	chr8:144659348-144659438				chr8:144659347-144659348;chr8:144659438-144659439		7.32	7.27	4.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.70	NA	4.55	0.00	0.00	0.00	3.70	11.76	0.00	NA	8.00	NA	8.57	6.67	4.00	NA	10.00	NA	8.82	12.00	0.00	NA	12.50	7.14	3.70	7.32	3.62	0.714229	1.000000
N	jcn_only_AA	ZMIZ2,ZNF212	chr7	+	chr7:44800193-44801047	chr7:44800193-44801020		chr7:44801021-44801047	chr7:44801047-44801048		5.88	0.00	11.59	NA	NA	NA	13.51	10.00	9.09	21.74	10.34	19.05	0.00	8.33	14.29	21.43	7.14	18.75	NA	6.12	10.00	5.00	13.51	7.14	0.00	13.75	8.13	14.29	21.05	0.00	0.00	8.54	NA	5.56	10.98	6.15	0.00	7.22	7.22	0.353007	0.663989
N	jcn_only_AD	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341224-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341165-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		8.15	7.06	7.91	6.72	4.73	5.88	6.57	7.06	5.92	7.43	8.21	9.48	6.16	6.77	6.75	6.22	7.76	7.05	3.28	6.77	6.18	6.12	7.06	6.63	9.68	7.79	6.78	6.44	5.73	5.83	8.77	7.03	0.00	6.28	5.59	5.87	6.37	7.42	1.06	0.192889	0.657607
K	alternative_acceptor	CIC	chr19	+	chr19:42797989-42798089	chr19:42797989-42798086		chr19:42798087-42798089	chr19:42798089-42798090		36.59	28.57	47.83	NA	42.86	NA	40.00	44.83	46.15	44.44	50.00	NA	41.67	47.83	44.12	54.55	48.39	NA	NA	33.33	31.58	36.36	40.00	NA	27.27	35.14	41.46	40.00	47.83	60.00	44.44	34.88	45.45	38.10	39.13	47.06	40.00	40.52	0.52	0.420308	0.733210
K	intron_retention	IRF9	chr14	+	chr14:24633344-24633822				chr14:24633343-24633344;chr14:24633822-24633823		10.00	0.00	13.76	6.90	5.00	4.76	1.82	3.45	1.91	1.28	2.04	2.94	6.06	3.78	4.93	3.17	1.54	3.36	11.11	11.30	5.77	20.00	13.95	13.76	0.00	9.15	7.89	15.49	7.89	12.10	9.09	10.08	0.00	22.39	15.00	14.94	0.91	9.12	8.21	0.139205	1.000000
K	intron_retention	PTK2B	chr8	+	chr8:27301789-27308265				chr8:27301788-27301789;chr8:27308265-27308266		7.59	0.00	8.75	NA	6.67	NA	1.79	10.00	3.77	0.00	4.62	0.00	5.00	0.00	5.00	0.00	1.54	1.54	NA	8.33	0.00	10.00	8.33	4.17	0.00	19.40	14.93	20.00	11.11	11.11	3.57	7.84	NA	3.70	11.54	6.82	0.90	7.96	7.06	0.275877	1.000000
N	jcn_only_AA	PPM1M	chr3	+	chr3:52283339-52283685;chr3:52283339-52283671	chr3:52283339-52283660		chr3:52283661-52283671;chr3:52283672-52283685	chr3:52283671-52283672;chr3:52283685-52283686		10.00	0.00	7.14	NA	5.80	NA	8.13	2.56	0.00	9.52	7.62	0.00	4.59	8.33	0.00	0.00	5.71	NA	7.14	16.00	8.70	NA	5.71	NA	NA	0.00	0.00	5.88	10.75	NA	0.00	8.57	5.00	0.00	0.00	NA	5.00	5.45	0.45	0.702948	0.867936
N	jcn_only_AA	STK11	chr19	+	chr19:1223172-1223636;chr19:1223172-1226457	chr19:1223172-1226452		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		93.55	91.45	92.31	86.67	97.26	89.74	92.86	100.00	100.00	93.55	96.23	100.00	97.01	95.45	97.78	92.86	90.91	88.89	87.34	88.89	91.36	100.00	93.33	100.00	90.00	100.00	93.22	96.15	92.11	85.71	100.00	91.53	89.90	95.45	84.62	92.31	90.72	97.72	7.00	0.062074	0.663989
N	alternative_last_exon		chr17	+	chr17:7253557-7254613	chr17:7253557-7254268	chr17:7254614-7254797	chr17:7254269-7254318			100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	91.67	100.00	96.77	NA	NA	NA	100.00	100.00	0.00	0.660086	0.787026
K	intron_retention		chr11	+	chr11:65417144-65417227				chr11:65417143-65417144;chr11:65417227-65417228		1.04	1.69	1.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	1.94	1.51	6.67	1.67	5.26	0.33	1.42	1.42	2.78	0.00	0.00	5.31	5.77	1.96	0.00	0.00	1.33	0.44	1.23	0.79	0.587383	1.000000
N	cassette	LSP1	chr11	+	chr11:1905255-1907961;chr11:1905255-1905729	chr11:1905255-1905509;chr11:1905554-1907961,chr11:1905554-1905729		chr11:1905510-1905553			100.00	97.25	100.00	100.00	98.71	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.67	100.00	100.00	98.05	100.00	100.00	98.77	98.39	99.29	100.00	100.00	100.00	100.00	99.63	100.00	100.00	100.00	94.24	99.09	97.99	98.14	99.03	100.00	0.97	0.121709	0.709176
K	alternative_last_exon	DHX8	chr17	+	chr17:41599595-41603754;chr17:41599595-41613779;chr17:41599595-41600995	chr17:41599595-41603863	chr17:41613780-41613866;chr17:41600996-41603038	chr17:41603864-41604154			28.57	42.47	24.62	35.14	44.83	24.62	18.52	11.54	12.00	17.86	15.38	6.67	18.75	16.00	14.29	21.21	23.33	22.22	41.82	26.32	38.60	26.09	27.91	28.57	38.46	21.05	28.30	30.77	31.43	28.57	22.22	28.17	44.16	25.58	26.09	20.00	40.14	21.63	-18.51	0.048455	0.234050
N	alternative_donor	FAM65A	chr16	+	chr16:67572972-67573630	chr16:67572986-67573630		chr16:67572972-67572985	chr16:67572971-67572972		0.00	0.00	2.70	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	NA	NA	0.00	0.00	0.00	4.55	0.00	NA	0.00	NA	NA	4.35	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.178439	0.563271
N	cassette	SNHG6	chr8	-	chr8:67834350-67837671;chr8:67834621-67837671;chr8:67834628-67837671	chr8:67834621-67834848,chr8:67834350-67834848,chr8:67834628-67834848;chr8:67834961-67837671		chr8:67834849-67834960			65.71	81.82	76.92	77.42	82.24	80.00	78.21	70.00	86.27	83.58	79.79	80.00	74.71	78.95	85.92	76.77	76.25	67.39	75.69	83.87	77.78	75.86	81.82	82.35	92.21	89.66	84.72	78.79	80.17	81.40	75.51	78.72	76.92	78.69	78.57	72.16	77.56	77.23	-0.33	0.569064	0.829613
K	intron_retention	CLASRP	chr19	+	chr19:45567486-45567600				chr19:45567485-45567486;chr19:45567600-45567601		12.12	10.53	17.07	25.00	18.92	NA	NA	NA	20.00	NA	NA	NA	6.67	NA	5.88	9.09	13.33	NA	19.23	7.69	14.81	27.78	19.44	18.75	8.11	12.50	21.21	28.57	18.52	10.00	12.77	13.79	12.20	14.29	25.00	18.52	10.53	12.31	1.78	0.302694	1.000000
N	alternative_acceptor	TCF25	chr16	+	chr16:89960267-89961424;chr16:89960267-89961490	chr16:89960267-89961445		chr16:89961425-89961445;chr16:89961446-89961490	chr16:89961445-89961446;chr16:89961490-89961491		83.87	92.31	79.55	80.00	85.19	NA	82.98	93.75	93.33	90.62	85.71	89.29	84.44	86.21	87.50	87.80	85.00	85.00	75.00	85.00	78.95	76.47	82.05	80.00	NA	89.66	81.40	77.78	77.78	76.92	68.00	80.00	92.31	80.00	86.49	75.93	84.44	85.60	1.16	0.842102	0.943976
N	alternative_acceptor	MED27	chr9	-	chr9:134738528-134759444	chr9:134744772-134759444		chr9:134738528-134744771	chr9:134738527-134738528		8.33	4.76	11.11	0.00	3.85	7.14	7.14	NA	8.33	3.33	3.45	4.35	5.26	NA	0.00	2.86	2.86	0.00	NA	10.00	6.25	4.17	7.41	8.33	10.00	8.33	4.55	5.56	3.57	2.70	5.00	9.09	0.00	8.33	8.70	8.82	5.26	8.33	3.07	0.245763	0.701506
K	intron_retention	ACAD9	chr3	+	chr3:128627108-128627815				chr3:128627107-128627108;chr3:128627815-128627816		7.14	17.65	9.52	0.00	10.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	8.82	14.29	NA	NA	9.09	6.67	10.71	0.00	0.00	9.52	0.00	8.70	11.11	8.33	0.00	0.00	0.00	0.618707	1.000000
K	intron_retention	SAT1	chrX	+	chrX:23801796-23802454				chrX:23801795-23801796;chrX:23802454-23802455		29.37	6.14	32.08	7.83	11.38	6.79	23.19	31.31	33.64	19.18	21.26	21.97	32.43	33.17	41.73	32.81	20.57	19.42	3.28	23.02	10.20	21.04	14.81	28.42	17.86	42.62	45.33	40.64	26.54	34.20	12.61	15.19	3.70	39.33	33.07	35.08	12.00	30.34	18.34	0.154564	1.000000
N	alternative_acceptor	CYB561A3	chr11	-	chr11:61120640-61121255;chr11:61120612-61121255	chr11:61121035-61121255		chr11:61120612-61120639;chr11:61120640-61121034	chr11:61120611-61120612;chr11:61120639-61120640		1.61	0.00	1.06	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.86	4.17	0.88	0.81	0.00	11.54	0.81	0.93	1.22	0.00	0.00	1.58	0.96	14.29	0.93	1.08	0.79	0.00	0.83	0.83	0.244785	0.699506
N	jcn_only_AA		chr20	+	chr20:61912700-61913456;chr20:61912700-61914137	chr20:61912700-61914170		chr20:61913457-61914137;chr20:61914138-61914170	chr20:61914137-61914138;chr20:61914170-61914171		94.59	100.00	95.24	NA	93.33	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	96.77	98.18	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31500689-31503143	chr6:31502283-31503143		chr6:31500689-31502282	chr6:31500688-31500689		58.33	37.16	63.79	57.14	48.35	34.78	12.63	23.91	15.58	15.79	14.81	12.24	16.53	25.00	30.21	22.02	15.32	11.86	21.95	50.00	26.47	72.73	67.70	77.36	42.00	57.39	54.10	58.97	57.69	55.56	57.83	60.10	22.62	75.46	61.95	74.30	22.29	53.70	31.41	0.038886	0.560254
K	cassette	SEP15	chr1	-	chr1:87346409-87368963	chr1:87346409-87352838;chr1:87352880-87368963		chr1:87352839-87352879			1.30	6.32	1.67	2.56	1.16	0.00	0.28	1.04	0.00	2.48	1.72	2.99	0.60	1.01	0.96	0.58	1.75	0.95	0.00	1.91	0.00	2.21	1.78	2.28	0.00	0.54	0.44	0.81	2.03	0.82	0.82	1.07	0.00	1.80	1.19	2.03	0.14	1.02	0.88	0.929750	0.982136
K	cassette	GSTK1	chr7	+	chr7:142962186-142964709	chr7:142962186-142962353;chr7:142962390-142964709		chr7:142962354-142962389			97.44	96.89	100.00	100.00	98.51	97.10	98.84	98.53	96.09	99.44	100.00	100.00	98.35	100.00	99.24	100.00	99.40	100.00	95.28	100.00	98.14	97.26	97.01	98.04	99.10	98.46	94.23	98.68	98.28	98.46	100.00	96.46	96.88	97.09	97.78	95.54	97.62	99.27	1.64	0.071812	0.631856
K	intron_retention	ATXN2L	chr16	+	chr16:28847444-28848048				chr16:28847443-28847444;chr16:28848048-28848049		88.52	84.62	95.06	83.78	78.57	75.86	76.92	63.64	61.82	72.09	61.54	66.67	80.00	67.74	63.38	80.56	64.00	60.00	92.86	92.86	84.21	85.29	81.54	83.87	90.48	86.84	87.21	83.33	75.81	76.32	90.38	93.20	86.21	78.00	91.38	90.16	85.41	87.68	2.27	0.658034	1.000000
N	cassette	C16orf62	chr16	+	chr16:19702794-19711699	chr16:19702794-19710823;chr16:19710971-19711699		chr16:19710824-19710970			100.00	100.00	100.00	100.00	97.01	100.00	100.00	100.00	100.00	100.00	96.36	100.00	98.15	100.00	100.00	100.00	98.11	100.00	95.35	100.00	95.24	100.00	98.77	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	96.34	100.00	100.00	100.00	99.08	100.00	0.92	0.100309	0.680881
K	intron_retention		chr11	+	chr11:63995139-63996718				chr11:63995138-63995139;chr11:63996718-63996719		36.84	9.86	40.00	9.09	25.00	7.41	0.00	NA	0.00	NA	6.25	NA	3.45	0.00	0.00	8.33	0.00	NA	16.39	28.57	12.77	NA	16.67	NA	16.95	NA	22.58	NA	33.33	NA	23.08	22.22	8.77	NA	29.41	30.00	9.31	25.82	16.51	0.386746	1.000000
K	cassette	ARHGAP9	chr12	-	chr12:57870435-57870938	chr12:57870435-57870653;chr12:57870747-57870938		chr12:57870654-57870746			92.00	100.00	83.33	NA	84.62	NA	95.35	NA	NA	80.00	93.75	NA	94.87	90.00	NA	NA	88.89	NA	NA	100.00	90.00	NA	87.50	NA	NA	90.00	82.61	NA	85.71	NA	NA	86.36	80.00	NA	95.00	100.00	95.11	91.00	-4.11	0.932129	0.982804
K	intron_retention	XPC	chr3	-	chr3:14187660-14188789				chr3:14187659-14187660;chr3:14188789-14188790		7.41	7.14	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	6.45	2.86	10.00	13.04	0.00	0.00	0.00	6.25	NA	7.69	NA	7.14	6.42	7.69	9.09	2.50	13.64	0.00	6.45	6.45	0.588833	1.000000
N	jcn_only_AA	ITGB1BP1	chr2	-	chr2:9547728-9548241;chr2:9547035-9548241	chr2:9547714-9548241		chr2:9547035-9547713;chr2:9547714-9547727	chr2:9547034-9547035;chr2:9547713-9547714		0.00	0.00	0.00	0.00	2.53	1.89	0.95	0.00	3.70	2.44	0.71	0.00	1.92	3.45	6.45	0.00	1.20	0.00	0.00	3.12	1.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	8.57	6.90	0.00	0.00	2.63	0.00	0.00	1.56	1.56	0.202357	0.663989
K	alternative_donor	TCF25	chr16	+	chr16:89954090-89958600	chr16:89954126-89958600		chr16:89954090-89954125	chr16:89954089-89954090		93.33	100.00	97.44	NA	100.00	NA	92.68	96.30	96.55	97.06	97.92	100.00	97.30	93.10	94.74	97.56	98.08	95.65	90.91	100.00	88.24	89.47	100.00	95.45	93.33	96.00	96.88	100.00	100.00	95.24	83.33	88.89	100.00	94.59	100.00	95.35	95.31	94.66	-0.65	0.489338	0.745779
K	jcn_only_AA	SHISA5	chr3	-	chr3:48509617-48510759	chr3:48510586-48510759		chr3:48509617-48510585	chr3:48509616-48509617		97.07	100.00	100.00	100.00	75.56	52.94	100.00	96.95	97.20	100.00	100.00	100.00	100.00	96.99	100.00	95.79	100.00	100.00	NA	93.14	100.00	100.00	100.00	100.00	100.00	98.63	94.51	94.44	92.00	92.16	100.00	100.00	63.16	100.00	100.00	96.43	100.00	97.03	-2.97	0.576501	0.800776
K	intron_retention		chr12	+	chr12:6494546-6495231				chr12:6494545-6494546;chr12:6495231-6495232		7.00	5.41	6.60	9.09	0.00	NA	0.00	0.00	0.76	1.43	0.93	0.00	1.28	0.00	0.61	0.00	0.56	0.00	20.00	5.26	4.17	2.08	3.26	4.65	NA	5.48	5.77	4.08	1.92	5.41	9.09	6.67	8.33	7.02	6.94	12.31	5.41	5.37	-0.04	0.800983	1.000000
K	intron_retention	NUDC	chr1	+	chr1:27272178-27272620				chr1:27272177-27272178;chr1:27272620-27272621		0.00	2.11	1.28	0.89	1.11	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.59	3.64	0.00	0.00	0.00	2.86	0.00	0.00	0.85	2.22	7.14	4.00	1.99	3.64	0.00	3.17	0.53	0.00	-0.53	0.818328	1.000000
K	cassette	SIPA1	chr11	+	chr11:65405654-65408301	chr11:65405654-65406606;chr11:65406723-65408301		chr11:65406607-65406722			3.45	0.00	7.50	NA	NA	NA	3.12	0.00	4.00	NA	0.00	0.00	2.70	0.00	0.00	0.00	0.00	NA	NA	5.88	NA	NA	0.00	NA	0.00	0.00	3.23	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	1.35	0.00	-1.35	0.942076	0.985246
K	intron_retention		chr20	-	chr20:17594866-17595381				chr20:17594865-17594866;chr20:17595381-17595382		8.54	4.08	7.94	5.41	9.23	11.50	1.52	3.33	4.08	5.66	1.32	0.89	1.39	2.17	3.37	2.82	3.03	1.09	3.70	3.73	6.72	14.81	6.67	6.67	3.33	5.00	5.95	8.57	4.76	5.26	6.10	8.75	9.35	7.55	9.62	5.23	3.52	4.37	0.85	0.887493	1.000000
K	intron_retention	SMARCC2	chr12	-	chr12:56557550-56558086				chr12:56557549-56557550;chr12:56558086-56558087		0.00	9.09	4.17	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	5.26	NA	NA	7.69	NA	9.09	11.11	3.33	NA	0.00	NA	0.00	7.41	NA	15.38	15.38	13.33	4.54	0.00	-4.54	0.944683	1.000000
K	intron_retention	NPLOC4	chr17	-	chr17:79526443-79532530				chr17:79526442-79526443;chr17:79532530-79532531		10.26	15.00	20.37	23.53	9.09	23.08	0.00	2.86	1.79	2.22	3.39	0.00	2.00	4.00	7.23	4.59	2.60	5.45	NA	6.52	8.33	5.41	7.14	8.57	NA	10.96	12.50	10.42	10.34	10.81	6.90	7.69	10.53	16.67	4.62	13.54	6.26	6.71	0.45	0.808831	1.000000
N	jcn_only_AA	GUK1	chr1	+	chr1:228333769-228334542;chr1:228333769-228334503	chr1:228333769-228334561		chr1:228334504-228334542;chr1:228334543-228334561	chr1:228334542-228334543;chr1:228334561-228334562		4.98	2.28	4.92	6.40	4.55	6.71	5.19	3.91	3.54	4.97	3.52	3.69	3.29	6.40	5.31	5.73	3.88	3.45	6.96	6.59	7.05	5.10	4.16	3.80	4.55	3.05	5.78	5.95	6.45	6.99	7.14	8.75	4.85	2.77	5.57	4.72	4.70	5.69	0.99	0.399690	0.671467
N	cassette	SLCO2B1	chr11	+	chr11:74914011-74925508	chr11:74914011-74914351;chr11:74914473-74925508		chr11:74914352-74914472			100.00	81.82	100.00	84.62	90.32	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	86.96	100.00	100.00	93.33	93.55	92.86	73.17	100.00	100.00	100.00	95.71	100.00	NA	100.00	85.71	100.00	100.00	90.48	86.33	100.00	13.67	0.037564	0.487987
K	coord_cassette	BORCS8,BORCS8-MEF2B	chr19	-	chr19:19293493-19302889	chr19:19293493-19296842;chr19:19296908-19297701;chr19:19297815-19302889		chr19:19296843-19296907;chr19:19297702-19297814			76.47	100.00	82.35	NA	70.00	NA	85.71	92.59	86.21	100.00	88.89	100.00	96.55	96.43	94.12	100.00	87.50	84.62	80.00	72.22	84.21	91.67	86.36	NA	70.00	78.95	62.50	86.67	82.61	95.00	93.75	76.00	58.33	100.00	85.00	86.36	82.85	85.77	2.92	0.679807	0.841098
K	cassette	SPP1	chr4	+	chr4:88898250-88901197	chr4:88898250-88898813;chr4:88899003-88901197		chr4:88898814-88899002			0.32	0.75	0.26	2.44	1.16	11.11	0.15	0.19	0.11	0.36	0.55	0.30	0.15	0.21	0.17	0.68	0.59	0.33	2.76	0.28	0.64	0.66	0.42	0.96	1.57	0.20	0.33	0.78	0.50	0.51	0.33	0.29	1.03	1.08	0.73	0.77	0.89	0.24	-0.65	0.100469	0.680881
K	intron_retention	TRIM41	chr5	+	chr5:180661996-180662353				chr5:180661995-180661996;chr5:180662353-180662354		65.22	60.53	90.62	NA	84.62	NA	70.59	75.00	89.47	NA	62.50	NA	73.33	100.00	89.47	NA	63.64	NA	58.82	64.29	64.00	NA	88.24	NA	66.67	NA	78.12	NA	70.37	61.54	66.67	69.70	80.00	NA	75.00	75.00	68.63	66.67	-1.96	0.986683	1.000000
K	jcn_only_AA	TMEM94	chr17	+	chr17:73494405-73494536	chr17:73494405-73494524		chr17:73494525-73494536	chr17:73494536-73494537		93.55	92.86	94.59	NA	95.65	NA	88.89	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	83.33	96.97	NA	100.00	93.75	100.00	NA	100.00	NA	76.92	100.00	93.88	NA	95.65	100.00	93.75	97.83	100.00	95.00	92.59	100.00	96.43	96.88	0.44	0.386018	0.663989
N	coord_cassette	KLC1	chr14	+	chr14:104145883-104159889	chr14:104145883-104153417;chr14:104153549-104158695;chr14:104158763-104159889		chr14:104153418-104153548;chr14:104158696-104158762			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	90.48	94.29	89.47	84.85	90.91	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	100.00	100.00	0.00	0.429526	0.674674
K	alternative_donor	CARS	chr11	-	chr11:3022479-3023199	chr11:3022479-3023191		chr11:3023192-3023199	chr11:3023199-3023200		20.83	11.03	16.05	13.51	15.79	15.58	12.00	13.16	13.25	26.67	13.95	40.00	18.18	16.13	24.59	25.00	17.95	NA	18.75	15.15	20.41	30.00	16.67	13.64	12.50	20.00	14.44	18.75	18.92	17.24	21.67	17.11	16.67	22.86	13.95	20.00	14.59	18.06	3.48	0.165665	0.563271
N	coord_cassette	CPVL	chr7	-	chr7:29070376-29152319	chr7:29070376-29111388;chr7:29111521-29111916;chr7:29112040-29126099;chr7:29126167-29132238;chr7:29132319-29152319		chr7:29111389-29111520;chr7:29111917-29112039;chr7:29126100-29126166;chr7:29132239-29132318			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	99.61	100.00	100.00	0.00	0.573963	0.751088
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67811121-67811280;chr11:67811121-67811311	chr11:67811121-67811264		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		8.75	2.86	8.12	12.50	0.00	NA	0.00	1.62	3.79	0.00	1.02	0.00	0.00	3.66	4.84	0.00	2.20	2.75	0.00	4.42	6.45	3.70	2.44	0.00	0.00	7.83	9.52	10.64	7.55	8.16	5.43	5.75	8.89	8.39	0.00	6.29	0.00	4.92	4.92	0.100264	0.663989
K	intron_retention	AD000671.6,IGFLR1	chr19	-	chr19:36231466-36231924				chr19:36231465-36231466;chr19:36231924-36231925		NA	4.17	24.00	NA	18.18	NA	3.33	0.00	3.33	0.00	1.89	0.00	3.08	0.00	9.68	3.57	2.94	0.00	11.76	5.26	8.33	NA	17.78	8.33	15.79	0.00	11.90	17.65	16.95	12.00	4.00	12.77	11.54	11.76	19.35	19.05	7.85	0.00	-7.85	0.654382	1.000000
N	alternative_acceptor	ZFYVE27	chr10	+	chr10:99517481-99517624;chr10:99517481-99518784	chr10:99517481-99518992		chr10:99517625-99518784;chr10:99518785-99518992	chr10:99518784-99518785;chr10:99518992-99518993		96.97	100.00	97.78	NA	100.00	NA	100.00	100.00	100.00	100.00	95.00	NA	90.91	100.00	100.00	100.00	100.00	NA	NA	94.74	90.00	100.00	100.00	93.75	100.00	94.74	96.97	NA	100.00	NA	94.12	94.74	NA	95.65	96.00	96.55	100.00	95.85	-4.15	0.719658	0.894796
N	alternative_donor	CDYL	chr6	+	chr6:4952608-4954131;chr6:4952877-4954131	chr6:4952644-4954131		chr6:4952608-4952643;chr6:4952644-4952876	chr6:4952607-4952608;chr6:4952643-4952644		100.00	100.00	88.24	93.75	100.00	93.98	100.00	100.00	100.00	100.00	100.00	95.00	100.00	93.33	100.00	100.00	100.00	94.12	NA	100.00	95.00	100.00	100.00	84.21	NA	90.00	95.83	100.00	100.00	97.87	100.00	100.00	86.67	95.83	88.24	95.00	100.00	100.00	0.00	0.889768	0.977754
K	jcn_only_AD	GPAA1	chr8	+	chr8:145138328-145138616	chr8:145138404-145138616		chr8:145138328-145138403	chr8:145138327-145138328		96.00	96.97	100.00	NA	100.00	NA	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	88.24	100.00	100.00	96.55	NA	100.00	100.00	96.88	100.00	96.43	NA	100.00	100.00	NA	100.00	100.00	95.24	100.00	100.00	0.00	0.401974	0.666922
N	cassette	UBE2B	chr5	+	chr5:133712386-133725915;chr5:133716500-133725915;chr5:133710155-133725915	chr5:133710155-133724015,chr5:133716500-133724015,chr5:133712386-133724015;chr5:133724105-133725915		chr5:133724016-133724104			96.00	100.00	98.33	100.00	96.08	100.00	95.89	100.00	97.73	99.33	99.11	99.28	100.00	98.20	98.88	97.27	98.32	100.00	100.00	96.36	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.39	100.00	94.26	97.12	100.00	100.00	100.00	100.00	100.00	97.28	-2.72	0.206887	0.709176
N	cassette	YPEL3	chr16	-	chr16:30106219-30106572	chr16:30106219-30106423;chr16:30106468-30106572		chr16:30106424-30106467			100.00	100.00	98.89	NA	100.00	NA	100.00	NA	98.51	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	96.36	100.00	97.47	NA	100.00	NA	100.00	100.00	97.83	NA	94.12	NA	100.00	96.34	91.43	NA	NA	NA	100.00	100.00	0.00	0.215582	0.709176
N	cassette	SAFB2	chr19	-	chr19:5592899-5598803	chr19:5592899-5593901;chr19:5594190-5598803		chr19:5593902-5594189			97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.80	93.51	95.00	93.75	95.35	100.00	100.00	100.00	0.00	0.505654	0.788365
K	intron_retention	DENND4B	chr1	-	chr1:153904917-153905117				chr1:153904916-153904917;chr1:153905117-153905118		6.67	3.12	10.34	NA	6.67	NA	0.00	1.89	0.00	0.00	1.61	0.00	2.90	0.00	3.64	0.00	3.17	NA	NA	5.77	16.67	4.35	7.94	13.64	12.50	6.98	7.69	25.00	8.57	7.14	0.00	4.65	7.14	7.55	10.17	10.91	3.12	3.83	0.71	0.980351	1.000000
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134467571-134471684;chr9:134469358-134471684	chr9:134470294-134471684		chr9:134467571-134469357;chr9:134469358-134470293	chr9:134467570-134467571;chr9:134469357-134469358		2.33	5.88	2.04	NA	8.33	NA	0.00	0.00	0.86	0.78	0.47	1.61	0.87	1.00	1.42	0.93	0.53	1.25	NA	1.96	NA	2.04	0.86	3.23	0.00	1.43	1.25	1.96	1.45	0.00	4.17	1.92	NA	6.36	2.90	5.13	0.43	1.69	1.26	0.937384	0.983127
K	intron_retention	KDM6B	chr17	+	chr17:7755955-7756317				chr17:7755954-7755955;chr17:7756317-7756318		0.00	0.00	2.44	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	1.59	0.00	3.09	0.00	0.00	0.00	0.00	0.00	0.00	9.09	3.70	NA	4.48	0.00	3.20	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	PPP6R1	chr19	-	chr19:55752745-55752844	chr19:55752760-55752844		chr19:55752745-55752759	chr19:55752744-55752745		92.96	95.65	95.52	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.73	94.74	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	92.86	92.31	90.00	93.10	96.88	100.00	96.48	-3.52	0.376659	0.663989
K	jcn_only_AD	HAUS4	chr14	-	chr14:23424386-23426132;chr14:23424386-23425954	chr14:23424386-23426124		chr14:23425955-23426124;chr14:23426125-23426132	chr14:23426124-23426125;chr14:23426132-23426133		57.69	64.52	54.29	NA	73.33	NA	67.03	69.81	62.50	80.00	67.19	73.68	70.67	62.86	60.42	50.00	57.14	73.33	72.73	60.87	53.33	NA	61.90	NA	NA	57.69	40.00	NA	52.38	NA	54.55	70.83	NA	90.00	50.00	75.00	68.85	59.28	-9.57	0.021346	0.343650
K	alternative_donor	TRAPPC3	chr1	-	chr1:36605768-36614860;chr1:36605768-36614692	chr1:36605768-36614937		chr1:36614693-36614860;chr1:36614861-36614937	chr1:36614860-36614861;chr1:36614937-36614938		95.00	91.53	95.24	90.32	92.65	92.11	95.89	96.49	91.14	93.02	93.33	93.62	95.65	90.16	90.38	86.96	91.76	94.29	92.31	97.18	94.94	92.45	91.40	97.83	100.00	95.95	95.00	93.18	90.62	95.00	94.44	95.45	93.62	88.24	94.92	92.86	94.64	95.47	0.84	0.982406	0.994374
N	alternative_donor	SIPA1	chr11	+	chr11:65415130-65416732;chr11:65416647-65416732	chr11:65415083-65416732		chr11:65415083-65415129;chr11:65415130-65416646	chr11:65415082-65415083;chr11:65415129-65415130		3.23	3.75	3.33	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	3.85	NA	8.82	0.00	9.68	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.03	5.45	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.536842	0.777227
N	alternative_acceptor	BCKDK	chr16	+	chr16:31123349-31123441;chr16:31123349-31123502	chr16:31123349-31123517		chr16:31123442-31123502;chr16:31123503-31123517	chr16:31123502-31123503;chr16:31123517-31123518		6.90	10.00	2.44	7.69	10.39	11.63	0.00	0.00	5.56	4.26	2.82	5.26	0.00	2.94	5.56	0.00	6.15	7.69	4.35	8.57	9.43	14.81	10.64	0.00	5.80	0.00	4.55	7.50	6.78	11.11	0.00	6.25	9.46	8.82	8.70	15.38	5.07	1.47	-3.60	0.450328	0.756228
K	intron_retention	RNPS1	chr16	-	chr16:2305728-2312278				chr16:2305727-2305728;chr16:2312278-2312279		2.50	0.00	4.92	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	3.70	0.00	1.41	2.35	1.49	0.00	4.17	0.00	0.00	3.17	0.00	8.33	4.08	0.00	4.48	0.00	5.19	0.00	3.10	3.10	0.417544	1.000000
N	jcn_only_AA	DPM2	chr9	-	chr9:130697594-130698831	chr9:130698060-130698831		chr9:130697594-130698059	chr9:130697593-130697594		85.71	91.67	84.21	93.33	88.89	76.47	92.31	81.25	88.00	93.10	81.82	91.67	100.00	100.00	100.00	100.00	93.94	100.00	60.78	75.00	86.96	100.00	86.96	76.47	77.14	78.95	90.91	93.94	94.59	87.50	87.50	87.10	78.57	96.00	91.89	93.75	85.12	83.48	-1.64	0.849947	0.939327
N	jcn_only_AD	SLC25A28	chr10	-	chr10:101373682-101380289;chr10:101373682-101378795;chr10:101373682-101378998;chr10:101373682-101379801;chr10:101373682-101379483	chr10:101373682-101375209		chr10:101375210-101378795;chr10:101378796-101378998;chr10:101378999-101379483;chr10:101379484-101379801;chr10:101379802-101380289	chr10:101378795-101378796;chr10:101378998-101378999;chr10:101379483-101379484;chr10:101379801-101379802;chr10:101380289-101380290		0.00	0.00	1.43	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	2.59	0.00	0.00	2.13	0.00	0.00	2.73	NA	4.62	0.00	0.00	11.11	1.79	0.00	0.00	0.00	2.63	0.00	2.02	4.44	3.75	NA	0.00	0.00	0.65	0.00	0.00	0.00	0.174793	0.657607
N	alternative_donor		chr6	-	chr6:86329136-86332304	chr6:86329136-86332199		chr6:86332200-86332304	chr6:86332304-86332305		100.00	80.00	89.66	100.00	94.44	NA	96.84	97.56	96.15	94.08	94.74	97.26	97.12	92.16	96.67	95.73	97.08	94.05	NA	88.89	100.00	92.77	95.89	88.37	NA	100.00	90.70	95.77	100.00	100.00	86.36	84.62	83.33	84.91	90.38	84.54	90.09	94.86	4.77	0.386427	0.657675
N	cassette	RTN4	chr2	-	chr2:55200985-55209650;chr2:55200758-55209650;chr2:55201004-55209650	chr2:55201004-55201830,chr2:55200985-55201830,chr2:55200758-55201830;chr2:55201901-55209650		chr2:55201831-55201900			95.14	100.00	96.21	100.00	100.00	NA	99.06	98.57	97.76	99.29	99.17	99.65	99.44	99.05	97.35	98.87	99.37	99.69	NA	98.80	97.44	99.17	98.75	99.08	NA	97.65	98.82	100.00	99.67	99.17	94.87	96.04	91.67	99.08	99.41	99.04	99.25	98.11	-1.14	0.930626	0.982348
K	intron_retention	POLR2H	chr3	+	chr3:184082838-184082920				chr3:184082837-184082838;chr3:184082920-184082921		0.00	0.00	8.51	0.00	9.68	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	4.65	0.00	0.00	0.00	0.00	5.26	4.76	5.88	14.81	6.25	0.00	0.00	2.22	0.00	12.00	0.00	10.00	6.98	0.00	NA	3.85	0.00	0.00	0.00	0.00	0.713483	1.000000
K	intron_retention	DDX23	chr12	-	chr12:49225100-49225860				chr12:49225099-49225100;chr12:49225860-49225861		3.77	5.41	5.81	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	1.59	0.00	0.00	0.00	0.00	1.92	2.00	11.54	5.13	4.76	0.00	0.00	2.99	0.00	2.86	2.35	5.26	7.61	8.70	5.56	2.94	5.48	0.84	0.96	0.11	0.674741	1.000000
K	cassette	C6orf106	chr6	-	chr6:34574682-34622401	chr6:34574682-34614377;chr6:34614576-34622401		chr6:34614378-34614575			87.04	100.00	81.19	NA	NA	NA	95.45	94.25	90.83	96.10	95.18	90.62	95.00	95.76	96.59	95.56	93.51	86.21	NA	85.96	85.71	100.00	95.00	88.00	100.00	90.38	92.00	100.00	100.00	NA	81.48	71.43	NA	92.06	91.04	88.89	97.72	88.71	-9.01	0.012028	0.331238
N	alternative_acceptor	ABR	chr17	-	chr17:936696-953289;chr17:916405-953289;chr17:936518-953289	chr17:948891-953289		chr17:916405-936517;chr17:936518-936695;chr17:936696-948890	chr17:916404-916405;chr17:936517-936518;chr17:936695-936696		0.00	2.86	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.89	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.76	0.00	0.00	1.43	0.00	-1.43	0.249445	0.706436
N	alternative_acceptor	PRR34-AS1	chr22	+	chr22:40805530-40805691;chr22:40805530-40805694;chr22:40805530-40806135	chr22:40805530-40805685		chr22:40805686-40805691;chr22:40805692-40805694;chr22:40805695-40806135	chr22:40805691-40805692;chr22:40805694-40805695;chr22:40806135-40806136		90.91	96.88	100.00	86.36	96.36	83.67	94.44	NA	NA	NA	93.33	NA	95.65	NA	90.91	NA	100.00	NA	94.68	100.00	100.00	NA	94.59	NA	90.91	91.67	90.32	100.00	93.33	100.00	100.00	85.19	91.11	92.31	100.00	100.00	94.56	95.84	1.28	0.564594	0.831700
K	alternative_acceptor	UFSP2	chr4	-	chr4:186321633-186324647	chr4:186323499-186324647		chr4:186321633-186323498	chr4:186321632-186321633		6.25	2.44	10.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	3.45	0.00	5.88	NA	0.00	0.00	0.00	NA	0.00	7.14	0.00	NA	3.85	NA	0.00	NA	7.41	0.00	3.23	0.00	0.00	8.70	0.00	13.33	8.00	NA	0.00	3.12	3.12	0.412605	0.726722
K	intron_retention	DDX5	chr17	-	chr17:62496892-62498127				chr17:62496891-62496892;chr17:62498127-62498128		42.49	43.33	44.90	37.04	20.88	35.00	4.66	14.68	10.80	3.86	4.78	3.79	12.96	13.47	23.08	6.03	4.41	5.81	44.68	48.99	44.44	38.18	24.67	45.97	16.67	53.57	46.44	34.71	20.39	32.76	56.48	51.83	35.56	35.36	33.95	46.24	26.12	45.74	19.62	0.425590	1.000000
N	alternative_acceptor	RBM6	chr3	+	chr3:50098981-50099394;chr3:50098981-50099068	chr3:50098981-50099111		chr3:50099069-50099111;chr3:50099112-50099394	chr3:50099111-50099112;chr3:50099394-50099395		18.75	37.14	20.63	35.71	26.92	NA	NA	NA	7.69	0.00	10.53	NA	10.53	15.38	22.73	10.00	7.69	NA	21.05	20.00	34.29	23.53	15.56	25.00	33.33	14.29	24.00	25.00	20.00	23.81	14.29	20.75	14.81	28.21	26.53	31.71	21.05	15.38	-5.67	0.260354	0.709013
K	jcn_only_AA	SRRT	chr7	+	chr7:100485481-100485674	chr7:100485481-100485662		chr7:100485663-100485674	chr7:100485674-100485675		73.02	77.16	79.49	87.32	84.29	88.12	77.50	82.35	85.11	88.89	82.54	87.50	88.00	75.68	83.02	74.00	77.17	91.67	74.80	84.38	80.49	84.78	85.44	92.59	72.73	81.58	85.92	94.00	85.19	86.27	78.21	83.33	76.82	83.67	90.14	89.58	76.99	79.89	2.91	0.635278	0.838192
N	jcn_only_AD	CHPT1	chr12	+	chr12:102120296-102122678;chr12:102117626-102122678;chr12:102120276-102122678	chr12:102120183-102122678					NA	92.52	100.00	87.88	82.00	100.00	95.00	85.71	87.50	100.00	87.50	91.30	85.42	71.43	88.24	100.00	79.41	81.25	85.00	91.67	88.57	83.33	91.84	100.00	78.57	NA	84.21	77.14	88.00	90.24	93.75	83.33	80.16	86.36	82.05	92.31	85.21	88.69	3.48	0.937441	0.964432
K	jcn_only_AA	DERL1	chr8	-	chr8:124031486-124033686	chr8:124031546-124033686		chr8:124031486-124031545	chr8:124031485-124031486		100.00	100.00	98.51	100.00	97.56	93.88	97.37	98.00	99.21	98.41	100.00	98.11	100.00	98.57	98.58	100.00	97.96	97.78	100.00	97.39	98.65	97.96	98.65	97.65	100.00	98.50	95.95	96.23	95.92	96.55	97.75	96.05	97.22	96.97	100.00	97.30	100.00	98.25	-1.75	0.313628	0.663989
K	intron_retention	RABL6	chr9	+	chr9:139733574-139733673				chr9:139733573-139733574;chr9:139733673-139733674		2.78	0.00	8.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	2.70	0.00	1.41	5.88	2.78	0.00	0.00	3.33	0.00	0.00	1.64	0.00	4.00	4.00	4.00	6.90	4.17	3.03	0.00	1.39	1.39	0.420602	1.000000
N	cassette	ITGAM	chr16	+	chr16:31308976-31332561	chr16:31308976-31309062;chr16:31309276-31332561		chr16:31309063-31309275			82.61	100.00	92.68	NA	NA	NA	94.59	100.00	100.00	97.62	92.03	97.67	95.28	100.00	NA	93.65	100.00	96.00	NA	100.00	100.00	88.24	97.73	96.77	78.57	83.33	92.00	100.00	100.00	100.00	100.00	90.00	NA	93.22	100.00	95.92	94.94	100.00	5.06	0.719534	0.899908
N	alternative_donor	SLAMF8	chr1	+	chr1:159802968-159803051	chr1:159802972-159803051		chr1:159802968-159802971	chr1:159802967-159802968		100.00	100.00	93.18	NA	NA	NA	100.00	97.73	100.00	100.00	97.44	92.86	97.67	98.06	96.30	100.00	97.47	NA	100.00	100.00	100.00	NA	100.00	NA	95.65	100.00	95.77	100.00	100.00	NA	NA	100.00	90.00	NA	93.10	NA	98.84	100.00	1.16	0.296014	0.650093
K	intron_retention	HNRNPUL2	chr11	-	chr11:62482852-62482971				chr11:62482851-62482852;chr11:62482971-62482972		4.96	1.20	4.09	2.70	1.26	2.56	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.62	0.00	0.00	0.00	2.00	3.91	2.36	2.25	2.73	3.61	2.22	1.94	1.53	0.97	0.87	0.59	8.40	4.10	4.17	2.31	2.19	1.16	1.63	2.92	1.29	0.687164	1.000000
N	cassette	UTP6	chr17	-	chr17:30200773-30205268	chr17:30200773-30202252;chr17:30202433-30205268		chr17:30202253-30202432			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	SHARPIN	chr8	-	chr8:145154522-145154605				chr8:145154521-145154522;chr8:145154605-145154606		0.00	3.08	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	6.45	7.14	0.00	3.23	0.00	0.00	3.17	0.00	5.00	6.52	3.12	0.00	0.00	1.92	0.00	1.31	1.31	0.933312	1.000000
N	alternative_donor	KMO	chr1	+	chr1:241752133-241753313	chr1:241752366-241753313		chr1:241752133-241752365	chr1:241752132-241752133		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	3.45	0.44	0.00	0.00	0.00	0.00	0.00	1.50	2.06	0.70	NA	1.00	0.00	0.00	1.67	0.00	0.00	2.63	5.00	1.36	0.57	0.63	0.00	0.00	0.00	0.454965	0.713923
K	cassette	C1orf54	chr1	+	chr1:150249041-150253245	chr1:150249041-150252053;chr1:150252153-150253245		chr1:150252054-150252152			82.93	72.93	84.21	80.26	78.79	78.85	81.25	88.16	86.96	76.92	76.27	83.02	78.95	89.23	100.00	79.10	85.11	78.72	84.13	87.88	83.45	83.33	83.87	88.89	62.35	81.65	80.56	85.11	71.72	75.68	84.85	78.57	67.48	81.58	75.86	76.47	75.94	86.36	10.42	0.020676	0.390745
N	jcn_only_AD	PPP1R21	chr2	+	chr2:48738608-48741853;chr2:48738617-48741853;chr2:48701959-48741853	chr2:48738517-48741853					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.88	0.00	NA	0.00	NA	1.54	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.649323	0.818639
K	intron_retention	CTBP1	chr4	-	chr4:1206212-1206700				chr4:1206211-1206212;chr4:1206700-1206701		0.00	0.00	5.88	0.00	2.86	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.55	4.35	4.55	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	4.55	5.88	3.23	0.00	0.00	0.00	0.00	0.819386	1.000000
K	intron_retention	WIPI1	chr17	-	chr17:66423395-66424969				chr17:66423394-66423395;chr17:66424969-66424970		3.45	16.67	7.14	NA	22.22	NA	0.00	1.43	3.33	0.00	1.61	0.00	0.00	0.00	0.00	6.25	0.00	0.00	13.33	5.17	4.26	0.00	12.24	16.67	NA	5.00	5.38	18.18	9.68	0.00	11.67	6.59	15.79	11.36	27.78	10.34	13.33	4.22	-9.11	0.226198	1.000000
N	jcn_only_AD	JOSD2	chr19	-	chr19:51013706-51014331;chr19:51013706-51014373	chr19:51013706-51014382		chr19:51014332-51014373;chr19:51014374-51014382	chr19:51014373-51014374;chr19:51014382-51014383		0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.579952	0.790420
N	jcn_only_AA	DENND3	chr8	+	chr8:142200517-142202429	chr8:142200517-142202007		chr8:142202008-142202429	chr8:142202429-142202430		5.56	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.69	5.26	4.55	0.00	0.00	NA	6.58	0.00	0.00	0.00	0.174893	0.663989
N	alternative_donor	DNAJC17	chr15	-	chr15:41067795-41068265;chr15:41067795-41068393	chr15:41067795-41068387		chr15:41068266-41068387;chr15:41068388-41068393	chr15:41068387-41068388;chr15:41068393-41068394		0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	5.26	0.00	0.00	NA	0.00	NA	0.00	0.00	5.00	NA	0.00	4.76	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.76	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
N	alternative_donor	TIMP2	chr17	-	chr17:76851947-76853603;chr17:76851947-76852045;chr17:76851947-76853471	chr17:76851947-76853628		chr17:76852046-76853471;chr17:76853472-76853603;chr17:76853604-76853628	chr17:76853471-76853472;chr17:76853603-76853604;chr17:76853628-76853629		2.48	0.48	6.21	0.00	0.92	0.53	0.00	0.00	0.00	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.99	1.74	0.45	0.00	0.58	1.60	0.80	2.16	1.85	0.00	0.00	0.00	2.40	2.47	1.35	1.34	1.14	0.90	0.64	1.95	1.31	0.144291	0.560769
N	alternative_donor	ABRACL	chr6	+	chr6:139349696-139355291;chr6:139354993-139355291;chr6:139350450-139355291;chr6:139349951-139355291	chr6:139350013-139355291		chr6:139349696-139349950;chr6:139349951-139350012;chr6:139350013-139350449;chr6:139350450-139354992	chr6:139349695-139349696;chr6:139349950-139349951;chr6:139350012-139350013;chr6:139350449-139350450		97.78	100.00	93.94	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175164	0.563271
K	jcn_only_AA	NCOR2	chr12	-	chr12:124825241-124826368	chr12:124825298-124826368		chr12:124825241-124825297	chr12:124825240-124825241		89.47	91.67	100.00	NA	NA	NA	100.00	92.31	100.00	95.68	97.35	95.77	98.44	96.43	100.00	95.88	97.53	96.10	NA	100.00	NA	93.33	98.28	91.89	100.00	91.67	95.00	96.55	97.73	95.65	NA	92.86	NA	100.00	96.88	96.55	99.22	92.31	-6.91	0.236892	0.663989
K	alternative_last_exon	ORAI3	chr16	+	chr16:30960839-30967520	chr16:30960839-30964505	chr16:30967521-30967782	chr16:30964506-30966259			84.21	69.41	83.33	43.75	64.29	33.33	90.77	96.15	95.45	70.59	86.79	NA	90.62	92.31	97.14	78.57	88.00	NA	72.00	73.91	71.74	45.45	71.79	NA	76.25	90.48	76.67	50.00	64.71	41.67	75.00	69.23	52.11	52.00	76.92	40.74	74.12	87.34	13.22	0.185488	0.410722
N	cassette	YWHAB	chr20	+	chr20:43514528-43530171;chr20:43515204-43530171;chr20:43515620-43530171	chr20:43514528-43516288,chr20:43515204-43516288,chr20:43515620-43516288;chr20:43516384-43530171		chr20:43516289-43516383			5.26	6.52	8.05	11.76	9.88	8.11	9.94	7.69	9.52	14.55	13.03	13.60	10.26	9.13	9.69	12.96	13.36	12.50	10.53	6.11	5.56	10.87	7.09	10.40	0.00	3.92	3.33	11.63	11.22	9.35	4.26	6.00	4.62	11.11	10.71	9.18	8.23	5.69	-2.54	0.641999	0.868138
N	jcn_only_AD	ETV5	chr3	-	chr3:185813103-185823093	chr3:185813103-185813884		chr3:185813885-185823093	chr3:185823093-185823094		0.00	0.00	NA	0.00	0.00	NA	0.00	5.88	NA	10.00	0.00	NA	0.00	0.00	NA	2.86	0.00	7.14	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	2.50	0.00	0.00	5.88	0.00	0.00	0.00	0.569342	0.782445
K	cassette	ACADVL	chr17	+	chr17:7127389-7127639	chr17:7127389-7127464;chr17:7127563-7127639		chr17:7127465-7127562			96.55	94.70	96.69	95.95	93.31	94.86	100.00	100.00	100.00	100.00	98.44	99.41	98.42	97.50	99.31	99.48	98.53	99.49	93.60	96.03	97.73	94.29	93.53	95.56	97.24	97.67	94.06	95.48	96.64	98.27	94.07	95.35	95.10	94.70	94.83	97.69	96.17	97.03	0.86	0.728085	0.905258
K	intron_retention	CYB561D2	chr3	+	chr3:50388992-50389439				chr3:50388991-50388992;chr3:50389439-50389440		8.00	0.00	9.68	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.76	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.70	0.00	0.00	5.88	7.14	0.00	0.00	0.00	0.476839	1.000000
K	intron_retention	AKT1	chr14	-	chr14:105239430-105239587				chr14:105239429-105239430;chr14:105239587-105239588		3.37	7.69	7.81	NA	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	3.90	4.65	0.00	0.00	1.20	0.00	0.00	3.03	2.44	6.52	10.00	4.44	2.86	3.06	0.00	1.22	1.22	0.918389	1.000000
K	jcn_only_AD	PPIA	chr7	+	chr7:44838414-44838845	chr7:44838504-44838845		chr7:44838414-44838503	chr7:44838413-44838414		71.43	68.75	59.52	73.33	60.87	63.64	77.78	52.17	36.36	52.17	62.50	73.33	69.23	52.78	46.58	52.00	57.14	52.38	50.00	58.33	66.67	75.00	63.64	54.55	NA	63.16	67.86	65.00	70.37	62.50	53.85	61.11	50.00	68.00	62.50	64.00	68.75	56.09	-12.66	0.503633	0.742275
N	cassette	GAK	chr4	-	chr4:844806-853393;chr4:844873-853149;chr4:844873-858909;chr4:844873-853393	chr4:844806-845537,chr4:844873-845537;chr4:845763-858909,chr4:845763-853149,chr4:845763-853393		chr4:845538-845762			86.02	84.40	87.00	78.31	88.24	80.33	100.00	98.86	100.00	90.16	100.00	100.00	93.33	96.63	96.10	89.47	93.75	93.55	82.09	88.00	94.25	100.00	89.77	87.50	89.06	93.86	91.30	93.33	93.55	91.23	91.09	92.62	86.67	89.34	100.00	87.96	87.87	92.47	4.61	0.370894	0.709176
K	cassette	MARK3	chr14	+	chr14:103964866-103969218;chr14:103958372-103969218	chr14:103964866-103966492,chr14:103958372-103966492;chr14:103966538-103969218		chr14:103966493-103966537			9.23	17.44	10.98	12.31	15.48	8.45	11.90	6.52	7.14	12.28	14.63	6.98	16.13	11.36	7.27	16.67	19.15	8.57	12.07	11.11	12.82	9.30	10.84	11.63	12.64	11.11	10.53	16.36	13.64	14.10	6.94	4.81	14.46	12.68	11.54	10.34	13.55	10.17	-3.38	0.004537	0.236885
K	intron_retention	NDUFV1	chr11	+	chr11:67375950-67376022				chr11:67375949-67375950;chr11:67376022-67376023		2.86	3.64	9.64	0.00	1.52	NA	1.43	0.00	0.00	0.00	0.79	0.00	1.78	0.00	6.56	1.54	0.00	0.00	4.65	9.09	1.45	2.78	3.06	2.44	0.00	13.04	8.33	5.13	3.66	0.00	4.76	9.80	4.08	6.56	4.76	4.44	2.71	3.81	1.10	0.586367	1.000000
K	intron_retention	RGS2	chr1	+	chr1:192779398-192779499				chr1:192779397-192779398;chr1:192779499-192779500		4.41	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.06	NA	NA	0.95	0.00	0.00	0.00	8.82	3.47	0.00	0.00	2.27	1.33	0.00	2.21	2.21	0.376856	1.000000
K	alternative_first_exon	ARHGAP27	chr17	-	chr17:43483450-43502929;chr17:43483450-43506988	chr17:43483450-43487597	chr17:43502930-43502997;chr17:43506989-43507663	chr17:43487598-43487790			29.03	39.13	60.00	NA	NA	NA	50.00	6.90	18.18	NA	41.67	0.00	55.56	7.32	25.00	27.27	54.29	3.45	NA	16.67	NA	NA	28.57	18.18	35.71	6.98	75.00	NA	NA	NA	NA	45.45	NA	NA	NA	4.17	44.56	7.32	-37.24	0.001775	0.018720
K	alternative_last_exon	MLST8,RP11-566K11.7	chr16	+	chr16:89977072-89977468;chr16:89977072-89984283	chr16:89977072-89977487	chr16:89984284-89984641	chr16:89977488-89977792			98.06	99.74	98.13	100.00	99.65	99.29	98.77	97.96	95.92	97.87	98.44	100.00	96.30	97.92	95.08	98.51	98.11	100.00	99.14	98.80	99.15	100.00	99.33	100.00	99.27	98.57	94.69	98.82	99.30	99.22	99.32	99.34	99.78	98.82	98.86	97.41	99.20	98.31	-0.89	0.516327	0.664615
N	alternative_donor		chr10	-	chr10:103868081-103868791	chr10:103868081-103868785		chr10:103868786-103868791	chr10:103868791-103868792		48.15	63.33	73.53	NA	46.15	NA	52.17	50.00	41.67	NA	50.00	NA	48.39	NA	55.56	50.00	48.57	NA	57.14	61.54	61.54	NA	72.22	NA	NA	NA	69.57	NA	61.54	NA	53.85	65.52	53.85	NA	86.67	NA	53.85	51.92	-1.93	0.696040	0.870486
N	intron_retention		chr16	-	chr16:31343184-31343327				chr16:31343183-31343184;chr16:31343327-31343328		100.00	92.66	100.00	100.00	88.72	100.00	85.56	100.00	100.00	100.00	97.41	97.73	84.62	92.86	NA	86.44	97.53	100.00	95.65	96.55	90.57	88.57	97.22	95.24	100.00	100.00	100.00	100.00	100.00	100.00	91.30	90.00	85.71	90.00	75.00	74.19	89.19	98.28	9.09	0.153953	1.000000
K	intron_retention		chr16	+	chr16:2819286-2820352				chr16:2819285-2819286;chr16:2820352-2820353		16.67	14.69	19.21	33.68	17.02	28.17	10.29	11.76	5.56	4.23	6.98	3.45	14.13	7.02	14.29	10.81	5.10	8.00	13.56	14.91	19.86	24.51	14.07	34.12	27.42	25.93	23.67	29.59	22.63	37.37	17.07	19.44	13.46	27.13	23.24	40.43	13.85	15.79	1.95	0.843220	1.000000
K	alternative_last_exon	ZNF581	chr19	+	chr19:56152550-56155918	chr19:56152550-56153862	chr19:56155919-56156988	chr19:56153863-56154835			93.33	96.67	95.65	90.00	97.78	81.40	93.75	NA	92.86	NA	94.12	NA	94.12	90.00	93.33	92.31	100.00	NA	95.12	90.00	96.88	81.82	95.65	NA	96.84	86.67	96.43	90.00	97.14	95.24	NA	95.24	94.29	93.75	95.24	95.45	94.71	90.00	-4.71	0.025008	0.216345
N	jcn_only_AD	FDPS	chr1	+	chr1:155282187-155287731;chr1:155282196-155287731	chr1:155282071-155287731		chr1:155282071-155282186;chr1:155282187-155282195	chr1:155282070-155282071;chr1:155282186-155282187		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	2.78	13.04	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	16.36	0.00	7.89	0.00	0.00	0.00	0.00	0.00	0.499687	0.739810
K	cassette	TMEM70	chr8	+	chr8:74891097-74893389	chr8:74891097-74891313;chr8:74891407-74893389		chr8:74891314-74891406			31.03	30.00	30.19	15.79	19.61	15.38	20.48	18.75	28.57	13.37	19.85	21.43	17.86	21.05	27.03	13.86	20.48	20.69	21.43	16.67	30.30	15.66	16.98	14.29	NA	40.00	23.53	18.57	24.21	16.22	48.15	53.49	30.43	21.84	23.53	26.13	21.43	26.04	4.61	0.396605	0.712028
K	jcn_only_AA	PSMA3	chr14	+	chr14:58714551-58718841	chr14:58714551-58718836		chr14:58718837-58718841	chr14:58718841-58718842		96.33	100.00	92.92	94.44	100.00	93.55	98.96	96.48	97.30	97.95	99.46	98.79	100.00	97.58	96.34	99.16	98.27	99.32	100.00	98.59	98.63	96.38	97.37	98.59	NA	95.93	98.92	98.67	96.33	98.42	88.19	91.52	100.00	98.17	94.21	97.01	100.00	96.41	-3.59	0.036925	0.663989
K	intron_retention		chr11	+	chr11:65349437-65351062				chr11:65349436-65349437;chr11:65351062-65351063		95.31	100.00	95.97	NA	100.00	NA	95.00	93.86	90.48	90.91	94.74	86.21	92.41	94.02	92.86	91.67	94.62	96.15	NA	88.64	90.62	NA	93.94	88.89	100.00	100.00	95.18	100.00	93.33	95.24	85.00	95.08	100.00	86.67	100.00	100.00	100.00	93.94	-6.06	0.326552	1.000000
K	intron_retention	MTMR14	chr3	+	chr3:9731828-9743473				chr3:9731827-9731828;chr3:9743473-9743474		17.65	12.28	8.70	11.11	9.09	18.18	0.00	0.00	0.00	NA	5.56	NA	0.00	14.29	0.00	0.00	7.69	NA	7.69	7.69	10.00	NA	6.67	NA	29.63	11.11	10.00	NA	11.76	NA	18.18	11.54	10.42	13.64	9.68	23.53	9.05	12.70	3.64	0.952421	1.000000
K	jcn_only_AD	RPA3	chr7	-	chr7:7678776-7680353	chr7:7678776-7679950		chr7:7679951-7680353	chr7:7680353-7680354		97.44	100.00	96.55	95.65	90.24	92.86	100.00	100.00	100.00	100.00	94.87	95.65	97.30	100.00	100.00	94.87	97.22	100.00	88.89	93.33	100.00	78.57	90.62	82.35	100.00	100.00	97.22	86.67	92.50	100.00	92.31	95.00	91.11	91.30	86.67	92.31	98.65	98.72	0.07	0.708061	0.847790
N	jcn_only_AD	QSOX1	chr1	+	chr1:180166026-180166467;chr1:180166012-180166467;chr1:180165930-180166467	chr1:180165735-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		69.28	74.07	68.83	80.00	66.67	75.00	68.57	72.60	66.81	81.25	78.26	79.41	70.18	65.83	66.79	62.07	74.58	82.86	67.19	68.35	70.05	72.00	75.00	85.71	58.54	67.07	67.20	65.00	78.95	80.56	70.63	69.05	70.27	80.85	75.00	72.73	69.38	68.81	-0.56	0.737260	0.863378
N	jcn_only_AA	NPEPL1,STX16-NPEPL1	chr20	+	chr20:4163496-4164229	chr20:4163496-4164140		chr20:4164141-4164229	chr20:4164229-4164230		97.17	NA	100.00	96.88	100.00	100.00	100.00	100.00	100.00	99.03	98.82	98.09	100.00	100.00	100.00	94.74	100.00	98.13	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	95.45	100.00	97.14	100.00	100.00	96.43	100.00	100.00	100.00	0.00	0.180858	0.663989
N	alternative_acceptor		chr5	.	chr5:176943449-176943725;chr5:176943485-176943725;chr5:176943518-176943725	chr5:176943514-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		2.44	0.00	1.85	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.08	0.00	0.00	7.69	4.17	6.98	7.69	0.00	2.27	2.86	0.00	0.00	0.00	0.496870	0.791230
N	alternative_donor	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341224-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341165-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		10.81	8.57	11.32	9.76	7.14	7.41	7.83	8.27	6.74	8.40	9.86	10.98	7.69	7.55	7.95	8.37	9.87	8.90	4.88	10.20	8.66	8.20	10.61	10.02	13.64	10.84	9.31	8.33	8.77	8.52	12.60	10.39	0.00	8.79	8.31	7.89	7.76	10.50	2.74	0.184062	0.563271
K	intron_retention		chr7	-	chr7:1195221-1197291				chr7:1195220-1195221;chr7:1197291-1197292		2.63	0.00	4.76	1.96	2.00	0.00	0.00	0.00	0.00	1.67	0.00	2.78	0.00	0.00	0.00	2.41	0.00	0.00	8.00	4.17	2.94	5.41	3.12	8.33	0.00	0.00	2.63	0.00	0.00	4.35	6.98	4.26	5.56	2.70	6.25	5.17	0.00	1.31	1.31	0.995747	1.000000
N	jcn_only_AA	EED,NDUFV1	chr11	+	chr11:85988181-85988959	chr11:85988181-85988813		chr11:85988814-85988959	chr11:85988959-85988960		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	11.90	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.653376	0.846812
N	cassette	LMBR1L	chr12	-	chr12:49496324-49496873	chr12:49496324-49496669;chr12:49496735-49496873		chr12:49496670-49496734			94.87	100.00	100.00	NA	93.75	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	95.24	100.00	NA	100.00	NA	100.00	100.00	97.44	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.175061	0.709176
N	cassette	SGF29	chr16	+	chr16:28601764-28602093	chr16:28601764-28601951;chr16:28601988-28602093		chr16:28601952-28601987			100.00	100.00	NA	100.00	96.30	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	92.31	85.71	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.24	NA	91.11	NA	100.00	100.00	96.16	100.00	3.84	0.781127	0.934744
N	jcn_only_AD	RP11-24F11.2	chr3	-	chr3:46406537-46412734	chr3:46406537-46408647		chr3:46408648-46412734	chr3:46412734-46412735		0.00	0.00	0.00	NA	0.00	0.00	6.45	0.00	0.00	11.11	4.08	0.00	0.00	0.00	NA	0.00	0.00	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr4	-	chr4:1207394-1208130				chr4:1207393-1207394;chr4:1208130-1208131		3.77	2.44	5.41	5.88	3.17	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.68	0.00	4.55	0.00	2.78	5.56	2.68	0.00	0.00	4.55	3.12	0.00	0.00	0.00	3.12	1.82	0.00	0.00	4.69	3.45	0.62	1.56	0.94	0.920531	1.000000
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3687329-3687726;chr20:3687354-3687726	chr20:3687272-3687726		chr20:3687272-3687328;chr20:3687329-3687353	chr20:3687271-3687272;chr20:3687328-3687329		0.00	0.00	0.00	NA	NA	NA	7.38	9.92	6.50	2.63	8.06	12.79	5.56	9.05	7.44	5.26	7.89	10.34	NA	6.45	NA	NA	NA	6.67	8.33	9.76	0.00	8.33	NA	5.88	6.67	0.00	NA	0.00	0.00	10.00	6.47	7.86	1.39	0.514687	0.801504
K	cassette	COPS4	chr4	+	chr4:83984400-83987590	chr4:83984400-83986212;chr4:83986309-83987590		chr4:83986213-83986308			0.00	0.00	0.00	0.00	3.33	NA	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	2.70	0.00	NA	0.00	6.67	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.363217	0.709176
K	intron_retention	SRRT	chr7	+	chr7:100484590-100484667				chr7:100484589-100484590;chr7:100484667-100484668		9.26	5.19	5.13	0.00	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	7.69	10.00	7.35	2.44	3.33	5.13	0.00	2.44	1.28	0.00	1.56	0.00	20.00	13.00	5.26	1.82	6.78	4.62	2.60	5.85	3.25	0.582754	1.000000
K	intron_retention	CHTOP	chr1	+	chr1:153614906-153615702				chr1:153614905-153614906;chr1:153615702-153615703		8.22	1.45	10.59	2.63	1.79	2.17	0.00	0.00	1.79	0.00	0.00	0.00	1.52	0.00	2.38	0.00	2.17	0.00	3.92	6.52	0.00	6.52	2.82	11.11	0.00	7.27	5.33	2.44	3.77	1.54	2.78	7.58	3.57	7.69	11.90	12.77	1.48	4.65	3.16	0.551965	1.000000
N	alternative_donor		chr19	-	chr19:36232130-36233290;chr19:36232130-36233167	chr19:36232130-36233296		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		85.71	91.58	81.58	95.45	97.06	91.18	93.10	88.24	100.00	100.00	90.20	100.00	94.92	87.50	91.89	100.00	93.88	100.00	92.24	94.12	100.00	94.74	95.04	100.00	93.18	92.86	87.93	92.50	93.14	94.44	95.12	92.73	92.92	90.91	89.66	100.00	93.01	90.55	-2.46	0.201750	0.571503
K	cassette	NDUFA5	chr7	-	chr7:123185731-123190523	chr7:123185731-123186711;chr7:123186872-123190523		chr7:123186712-123186871			0.00	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	2.56	0.00	0.00	3.28	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	5.77	2.78	0.00	1.92	0.00	0.00	0.00	0.00	0.954733	0.987421
N	alternative_acceptor	AGRN	chr1	+	chr1:989932-990203;chr1:989932-990445	chr1:989932-990756		chr1:990204-990445;chr1:990446-990756	chr1:990445-990446;chr1:990756-990757		7.53	16.30	6.59	10.00	5.13	6.10	0.00	0.00	0.71	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	6.90	2.59	3.33	8.82	5.08	3.77	0.00	2.50	2.13	0.00	2.22	3.70	1.53	2.15	3.23	0.00	7.50	1.48	1.61	2.02	0.40	0.498518	0.791230
N	alternative_acceptor	LAPTM4A	chr2	-	chr2:20240769-20251170	chr2:20240773-20251170		chr2:20240769-20240772	chr2:20240768-20240769		98.02	100.00	95.37	100.00	95.31	NA	97.08	97.48	100.00	97.01	97.71	96.43	98.52	97.70	98.02	96.20	97.70	100.00	NA	96.07	93.75	96.51	97.24	97.85	NA	96.90	95.99	97.14	95.74	100.00	97.67	94.93	100.00	94.08	96.22	94.21	99.26	97.58	-1.68	0.102452	0.598353
K	intron_retention	COX20	chr1	+	chr1:245005361-245005496				chr1:245005360-245005361;chr1:245005496-245005497		26.67	0.00	54.55	0.00	5.88	0.00	0.00	0.00	0.00	2.22	0.00	0.00	1.92	0.00	5.71	3.03	1.64	0.00	0.00	31.25	6.45	8.33	16.67	13.51	NA	25.00	32.00	0.00	8.00	0.00	NA	21.05	0.00	16.22	10.87	18.60	0.00	25.00	25.00	0.147815	1.000000
K	alternative_donor	AKT1S1	chr19	-	chr19:50376560-50380281;chr19:50376560-50380493	chr19:50376560-50379859		chr19:50379860-50380281;chr19:50380282-50380493	chr19:50380281-50380282;chr19:50380493-50380494		65.62	87.50	84.85	68.42	82.61	NA	66.67	69.23	66.67	76.47	72.73	NA	61.90	89.47	59.46	83.33	77.78	NA	NA	80.95	75.00	NA	92.59	84.21	83.33	79.63	65.71	70.59	87.50	91.43	81.25	54.29	81.25	87.50	69.44	82.14	81.25	80.29	-0.96	0.806104	0.936181
K	alternative_last_exon	PTPRJ	chr11	+	chr11:48152269-48154513;chr11:48152269-48157590	chr11:48152269-48153062	chr11:48157591-48157848	chr11:48153063-48154272			33.33	76.47	9.46	NA	NA	100.00	3.57	5.38	3.28	2.44	1.61	3.12	1.33	5.26	3.85	4.00	0.85	2.00	100.00	22.22	NA	NA	NA	15.00	100.00	16.00	12.90	30.77	NA	63.64	69.23	30.77	94.74	15.79	14.29	17.65	85.60	19.11	-66.49	0.125955	0.340761
N	alternative_acceptor	ABCC3,TAOK1	chr17	+	chr17:48755581-48756713;chr17:48755581-48756716;chr17:48755581-48757158;chr17:48755581-48757145	chr17:48755581-48755877		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		18.92	14.81	26.49	NA	11.54	NA	2.78	0.00	NA	0.00	5.41	0.00	4.55	NA	7.14	0.00	5.88	NA	15.38	21.74	10.00	4.55	11.25	4.17	22.22	19.35	21.82	7.14	11.76	0.00	17.39	21.74	6.67	12.50	15.52	3.23	10.74	18.92	8.18	0.403661	0.719111
K	cassette	TMEM50B	chr21	-	chr21:34828092-34832719	chr21:34828092-34828310;chr21:34828405-34832719		chr21:34828311-34828404			0.00	0.00	7.14	NA	6.67	NA	0.00	3.57	0.00	0.00	0.00	0.00	2.27	0.00	2.56	NA	0.00	0.00	0.00	7.69	NA	0.00	6.25	5.88	NA	12.50	20.00	NA	8.33	NA	0.00	6.52	0.00	0.00	4.17	6.25	0.00	1.78	1.78	0.160894	0.709176
K	jcn_only_AA	SLC39A13,TCIRG1	chr11	+	chr11:47436461-47436610	chr11:47436461-47436589		chr11:47436590-47436610	chr11:47436610-47436611		0.00	0.00	1.41	0.00	4.76	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	NA	0.00	0.00	0.00	2.38	3.92	0.00	0.00	2.13	2.22	0.00	0.00	0.00	0.00	0.00	2.27	1.89	5.00	4.08	0.00	0.00	0.00	0.591773	0.811866
K	cassette	PHPT1	chr9	+	chr9:139744590-139745206	chr9:139744590-139744954;chr9:139745013-139745206		chr9:139744955-139745012			4.55	2.92	2.00	1.60	1.74	1.07	2.68	0.00	1.61	1.59	2.84	2.63	2.48	4.35	5.56	2.83	3.28	4.11	1.96	3.77	3.00	2.53	1.65	3.00	3.63	7.14	9.80	0.00	2.22	1.98	3.66	3.15	2.29	1.27	1.19	1.78	2.58	4.06	1.48	0.246252	0.709176
K	intron_retention	KLC1	chr14	+	chr14:104145856-104153417				chr14:104145855-104145856;chr14:104153417-104153418		22.86	40.38	50.00	47.62	50.00	43.75	36.84	50.00	46.15	59.09	50.00	66.67	35.29	44.44	40.00	45.83	57.69	81.82	41.67	25.00	50.00	NA	42.31	26.32	32.26	20.00	51.52	41.18	36.36	45.00	20.59	33.33	33.33	36.67	35.48	42.86	36.06	23.93	-12.13	0.535445	1.000000
N	cassette	EWSR1	chr22	+	chr22:29684776-29688125	chr22:29684776-29687550;chr22:29687589-29688125		chr22:29687551-29687588			100.00	100.00	94.12	100.00	100.00	100.00	100.00	96.43	95.74	100.00	98.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.10	100.00	NA	95.00	100.00	100.00	97.14	96.23	96.61	94.03	100.00	100.00	96.61	98.02	100.00	98.31	-1.69	0.082510	0.641134
K	intron_retention	HK3	chr5	-	chr5:176315567-176315709				chr5:176315566-176315567;chr5:176315709-176315710		42.55	54.00	41.67	NA	42.11	NA	7.05	8.65	5.26	3.12	13.85	2.63	17.74	9.21	NA	9.43	14.55	3.33	50.00	45.83	25.00	NA	34.15	63.64	28.57	38.36	48.84	35.00	39.66	50.00	37.93	45.83	50.00	46.67	39.66	39.22	39.28	38.14	-1.14	0.948836	1.000000
K	intron_retention	CEBPZ	chr2	-	chr2:37429047-37429926				chr2:37429046-37429047;chr2:37429926-37429927		14.71	10.83	8.93	6.49	5.88	8.65	31.03	NA	25.93	20.45	33.33	38.89	31.25	NA	22.22	9.26	43.33	54.55	7.14	6.67	6.25	4.69	9.46	12.24	0.00	0.00	13.33	7.69	9.26	10.45	6.90	7.02	5.36	11.32	12.73	8.00	8.98	6.79	-2.20	0.525583	1.000000
K	alternative_last_exon	URGCP,URGCP-MRPS24	chr7	-	chr7:43908976-43921257	chr7:43918860-43921257	chr7:43908907-43908975	chr7:43915512-43918859			100.00	88.24	100.00	100.00	100.00	100.00	100.00	100.00	96.77	97.30	96.15	96.67	100.00	100.00	96.97	100.00	96.77	100.00	NA	100.00	94.44	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	93.33	100.00	100.00	98.67	100.00	100.00	0.00	0.292912	0.491468
N	cassette	MTMR14	chr3	+	chr3:9719072-9724861	chr3:9719072-9719667;chr3:9719743-9724861		chr3:9719668-9719742			100.00	100.00	100.00	100.00	100.00	NA	93.02	98.18	100.00	91.67	93.51	89.66	97.10	100.00	95.12	93.83	96.55	91.67	NA	100.00	92.00	96.88	95.65	92.59	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	100.00	0.00	0.294005	0.709176
K	cassette	EIF4A1	chr17	+	chr17:7476183-7477577	chr17:7476183-7476717;chr17:7476866-7477577		chr17:7476718-7476865			0.81	2.68	1.76	0.00	0.00	0.00	0.00	0.39	0.00	0.20	0.00	0.00	0.00	0.40	0.92	0.11	0.00	0.00	1.69	0.71	0.00	0.84	1.42	0.48	16.67	1.34	1.04	0.34	0.32	0.46	3.42	2.02	1.06	1.04	0.86	0.73	1.38	0.76	-0.61	0.389187	0.709410
K	intron_retention	TTYH3	chr7	+	chr7:2689623-2691820				chr7:2689622-2689623;chr7:2691820-2691821		1.14	0.00	0.82	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	1.10	0.00	0.00	0.44	0.00	0.00	1.52	1.33	0.00	0.00	0.00	1.79	1.41	7.69	0.78	1.29	0.50	0.00	1.12	1.12	0.803606	1.000000
N	alternative_acceptor	SARS	chr1	+	chr1:109756751-109757168;chr1:109756751-109766578;chr1:109756751-109766599	chr1:109756751-109766603		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		4.76	0.00	2.08	NA	0.00	NA	1.45	0.00	2.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.55	0.00	0.00	10.53	5.56	NA	0.00	9.38	0.00	0.00	0.00	0.00	4.08	0.00	0.00	4.44	0.00	0.00	0.00	0.00	0.297436	0.709013
K	intron_retention	HSF1	chr8	+	chr8:145534936-145535006				chr8:145534935-145534936;chr8:145535006-145535007		10.34	10.34	12.00	9.09	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	6.06	2.38	3.33	0.00	0.00	2.38	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000
K	alternative_last_exon	LRRC41	chr1	-	chr1:46733350-46744853	chr1:46744757-46744853	chr1:46733167-46733349	chr1:46743134-46744756			100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.66	100.00	100.00	97.37	95.45	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.655680	0.786816
K	jcn_only_AA	TFCP2	chr12	-	chr12:51489059-51489771	chr12:51489062-51489771		chr12:51489059-51489061	chr12:51489058-51489059		94.12	86.96	82.76	NA	90.91	NA	80.00	78.57	81.82	77.78	93.55	NA	81.58	100.00	100.00	94.12	88.89	NA	90.91	76.92	86.49	100.00	84.21	NA	96.55	NA	87.88	100.00	90.91	NA	81.82	89.29	97.14	78.57	84.00	100.00	88.94	81.82	-7.12	0.651449	0.845821
N	jcn_only_AD	CHID1	chr11	-	chr11:870500-883147;chr11:870500-874774	chr11:870500-883199		chr11:874775-883147;chr11:883148-883199	chr11:883147-883148;chr11:883199-883200		0.00	5.80	0.00	0.00	3.12	5.88	6.10	0.00	14.29	11.11	0.00	2.70	4.35	NA	5.26	2.22	0.00	0.00	3.01	0.00	0.00	9.52	5.26	9.52	0.00	NA	0.00	0.00	0.00	2.86	0.00	0.00	0.00	6.90	0.00	2.38	3.68	0.00	-3.68	0.034181	0.443150
N	alternative_acceptor	APEH	chr3	+	chr3:49717078-49717973	chr3:49717078-49717508		chr3:49717509-49717973	chr3:49717973-49717974		3.03	0.00	0.00	NA	0.00	NA	0.00	4.00	2.70	0.00	0.00	0.00	0.94	3.85	2.44	1.79	0.00	0.00	0.00	5.00	3.33	5.88	7.14	0.00	NA	4.55	3.12	7.14	7.41	0.00	4.35	3.45	0.00	3.23	4.88	2.94	0.00	4.17	4.17	0.000002	0.003911
N	jcn_only_AD	RNF167	chr17	+	chr17:4847763-4847852;chr17:4846237-4847852	chr17:4846815-4847852					93.33	97.33	100.00	96.55	100.00	100.00	100.00	100.00	97.30	98.28	98.97	100.00	98.95	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	87.80	96.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	98.15	99.47	98.00	-1.47	0.949230	0.971784
N	cassette	EDC4	chr16	+	chr16:67916769-67917470	chr16:67916769-67916860;chr16:67916910-67917470		chr16:67916861-67916909			100.00	100.00	92.86	93.33	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	93.33	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	92.00	83.33	100.00	100.00	94.74	100.00	96.88	-3.12	0.896052	0.967641
N	cassette	DAZAP1	chr19	+	chr19:1428995-1430220	chr19:1428995-1429965;chr19:1429996-1430220		chr19:1429966-1429995			100.00	100.00	100.00	96.55	96.08	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	92.86	94.12	100.00	98.11	95.45	100.00	100.00	0.00	0.529203	0.804319
K	intron_retention	PPFIBP2	chr11	+	chr11:7674432-7674732				chr11:7674431-7674432;chr11:7674732-7674733		100.00	92.57	94.74	100.00	100.00	96.88	100.00	100.00	100.00	NA	100.00	91.67	100.00	NA	90.91	NA	100.00	NA	97.40	100.00	93.94	100.00	100.00	100.00	92.47	88.24	100.00	NA	100.00	NA	92.00	97.78	95.83	100.00	97.56	94.87	96.62	100.00	3.38	0.840813	1.000000
K	jcn_only_AD	RPS15A	chr16	-	chr16:18800441-18801218;chr16:18800441-18801631	chr16:18800441-18801565		chr16:18801219-18801565;chr16:18801566-18801631	chr16:18801565-18801566;chr16:18801631-18801632		30.36	19.77	31.39	30.05	23.30	24.25	17.59	29.17	26.46	12.83	12.47	15.13	16.22	35.79	30.50	18.90	10.08	11.61	22.78	35.44	22.11	27.75	22.85	21.90	21.81	38.36	30.58	22.34	22.15	24.10	36.36	33.51	26.87	32.34	29.61	27.13	20.79	35.61	14.82	0.000103	0.060704
K	intron_retention	GALNS	chr16	-	chr16:88880934-88884414				chr16:88880933-88880934;chr16:88884414-88884415		6.90	16.67	16.22	NA	9.09	NA	2.78	3.45	0.00	2.27	3.92	0.00	0.00	3.45	8.70	4.35	4.76	0.00	14.29	6.90	4.08	10.00	6.06	5.00	0.00	6.90	7.14	4.55	4.17	0.00	9.52	21.74	12.50	5.88	11.11	7.41	7.64	6.90	-0.74	0.703475	1.000000
N	alternative_donor	NAGK	chr2	+	chr2:71296192-71297631;chr2:71295972-71297631;chr2:71295467-71297631;chr2:71296918-71297631;chr2:71295803-71297631	chr2:71295843-71297631		chr2:71295467-71295802;chr2:71295803-71295842;chr2:71295843-71295971;chr2:71295972-71296191;chr2:71296192-71296917	chr2:71295466-71295467;chr2:71295802-71295803;chr2:71295842-71295843;chr2:71295971-71295972;chr2:71296191-71296192		69.70	83.33	64.71	NA	NA	NA	89.53	92.31	97.06	94.59	93.06	97.56	90.91	93.75	95.83	94.29	90.20	94.44	94.44	86.05	100.00	81.82	88.24	77.78	66.67	79.37	76.19	92.86	90.48	96.67	91.67	68.42	94.44	75.00	73.68	80.00	90.22	88.86	-1.36	0.855482	0.960074
N	cassette	MFF	chr2	+	chr2:228205097-228211941;chr2:228205097-228217229;chr2:228205097-228220392	chr2:228205097-228207460;chr2:228207536-228220392,chr2:228207536-228211941,chr2:228207536-228217229		chr2:228207461-228207535			11.32	6.98	16.67	16.67	15.56	0.00	14.29	20.00	16.39	16.67	21.74	7.14	10.34	22.64	18.00	18.42	16.67	21.43	13.64	7.32	13.16	21.43	10.42	6.67	6.67	10.00	13.61	17.39	13.21	13.79	10.00	10.59	6.25	16.00	13.89	18.52	8.66	10.66	2.00	0.225863	0.709176
K	cassette	HSD17B14	chr19	-	chr19:49316606-49316919	chr19:49316606-49316689;chr19:49316810-49316919		chr19:49316690-49316809			57.89	57.14	50.00	54.84	52.05	60.78	73.68	76.92	NA	77.78	81.82	69.23	77.78	66.67	NA	81.82	68.00	90.00	63.77	62.50	58.54	71.43	53.62	85.71	38.78	53.33	78.95	57.69	65.45	67.57	44.19	55.00	56.06	71.88	64.71	74.29	60.45	60.20	-0.26	0.899591	0.969278
N	jcn_only_AD		chr1	-	chr1:1337637-1337841;chr1:1337637-1337738;chr1:1337637-1341182	chr1:1337637-1341188		chr1:1337739-1337841;chr1:1337842-1341182;chr1:1341183-1341188	chr1:1337841-1337842;chr1:1341182-1341183;chr1:1341188-1341189		100.00	96.87	100.00	100.00	98.91	98.29	100.00	96.15	92.54	96.59	100.00	100.00	99.12	100.00	100.00	98.32	100.00	100.00	99.22	100.00	97.16	100.00	97.18	100.00	100.00	98.08	100.00	94.25	97.78	96.58	100.00	97.71	97.95	94.50	100.00	97.22	99.17	100.00	0.83	0.834002	0.923769
K	jcn_only_AA	SCYL1	chr11	+	chr11:65304222-65304507	chr11:65304222-65304456		chr11:65304457-65304507	chr11:65304507-65304508		60.38	58.44	57.81	67.92	62.12	53.45	60.00	86.79	74.63	62.65	62.30	60.00	67.80	80.00	63.75	68.49	55.56	59.65	57.97	73.91	75.76	68.57	51.22	61.90	59.26	66.67	60.76	65.96	61.40	76.12	67.24	65.82	59.49	59.09	56.86	64.86	59.38	70.57	11.20	0.027779	0.637417
K	cassette	EIF1AY	chrY	+	chrY:22744580-22749909	chrY:22744580-22746359;chrY:22746411-22749909		chrY:22746360-22746410			97.62	94.34	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	97.62	97.06	96.97	98.21	100.00	100.00	97.96	100.00	100.00	95.77	98.55	100.00	100.00	98.77	97.47	93.41	94.87	95.65	100.00	96.72	98.48	97.91	-0.57	0.715625	0.899102
N	jcn_only_AA	METRNL	chr17	+	chr17:62463763-62469521;chr17:62463763-62492438;chr17:62463763-62488401;chr17:62463763-62471431	chr17:62463763-62464426		chr17:62464427-62469521;chr17:62469522-62471431;chr17:62471432-62488401;chr17:62488402-62492438	chr17:62469521-62469522;chr17:62471431-62471432;chr17:62488401-62488402;chr17:62492438-62492439		NA	100.00	NA	NA	100.00	100.00	97.92	97.50	93.55	100.00	100.00	100.00	91.67	93.10	100.00	100.00	88.24	100.00	100.00	100.00	94.74	NA	90.00	NA	70.00	87.50	82.61	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	NA	98.96	95.30	-3.66	0.826784	0.929871
K	intron_retention	STAT6	chr12	-	chr12:57493874-57496072				chr12:57493873-57493874;chr12:57496072-57496073		4.00	12.20	3.61	NA	15.79	73.33	0.00	0.88	0.00	0.00	0.00	2.94	1.15	1.53	2.04	0.00	1.59	0.00	30.00	2.38	21.74	8.82	3.45	6.12	0.00	3.03	2.99	3.70	6.38	16.67	9.09	4.35	18.75	7.14	3.90	8.74	6.67	2.71	-3.97	0.610539	1.000000
N	jcn_only_AD	ARHGAP4,NAA10	chrX	-	chrX:153198038-153199395;chrX:153198038-153199413	chrX:153198038-153199355		chrX:153199356-153199395;chrX:153199396-153199413	chrX:153199395-153199396;chrX:153199413-153199414		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	JOSD2	chr19	-	chr19:51010957-51013542				chr19:51010956-51010957;chr19:51013542-51013543		5.88	4.29	10.26	6.90	1.89	4.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	4.41	4.00	3.03	5.26	5.71	30.00	8.00	3.64	5.08	3.57	0.00	2.70	3.64	6.25	4.48	0.00	11.76	5.56	4.35	3.64	-0.71	0.929444	1.000000
K	intron_retention		chr7	+	chr7:150815432-150815591				chr7:150815431-150815432;chr7:150815591-150815592		4.44	2.22	2.53	0.00	1.92	NA	0.00	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	3.57	0.00	0.00	5.36	0.00	1.43	0.00	0.00	1.43	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.878094	1.000000
K	intron_retention	HARS	chr5	-	chr5:140057601-140058586				chr5:140057600-140057601;chr5:140058586-140058587		6.25	0.00	8.93	NA	4.76	NA	0.00	11.11	29.55	0.00	3.57	18.75	0.00	14.71	27.03	0.00	0.00	20.00	0.00	7.69	0.00	11.11	5.00	7.69	NA	6.67	0.00	5.26	0.00	9.09	8.33	9.38	NA	12.12	2.27	14.29	0.00	8.01	8.01	0.364022	1.000000
N	alternative_donor	BRI3	chr7	+	chr7:97911766-97935794	chr7:97920797-97935794		chr7:97911766-97920796	chr7:97911765-97911766		89.13	100.00	63.89	100.00	100.00	100.00	93.18	100.00	83.33	87.50	93.18	86.67	90.91	100.00	83.33	89.66	89.47	NA	100.00	85.29	100.00	95.24	100.00	92.86	100.00	87.88	92.86	100.00	100.00	100.00	96.97	82.76	98.78	97.14	95.24	100.00	99.39	93.05	-6.34	0.244394	0.614888
K	alternative_donor	CHD3	chr17	+	chr17:7812657-7813745	chr17:7812703-7813745		chr17:7812657-7812702	chr17:7812656-7812657		21.43	28.57	33.33	NA	13.64	NA	4.00	6.25	11.11	6.67	8.70	7.69	5.00	9.09	7.69	NA	10.00	NA	37.50	33.33	30.00	18.18	24.00	18.18	15.00	NA	25.53	NA	25.00	9.09	NA	26.92	25.00	20.00	21.05	21.05	20.00	15.26	-4.74	0.847730	0.958191
K	alternative_first_exon	ARHGAP30	chr1	-	chr1:161023176-161039409	chr1:161023176-161024155	chr1:161039410-161039760	chr1:161024156-161024263			68.75	79.17	64.29	NA	NA	NA	87.18	83.33	67.65	NA	77.08	NA	84.38	77.78	62.03	76.00	71.43	NA	NA	65.12	NA	NA	77.14	NA	75.00	67.14	68.66	61.54	75.86	NA	66.67	65.00	NA	65.00	64.86	83.33	81.78	67.94	-13.83	0.039695	0.151012
K	intron_retention	CITED2	chr6	-	chr6:139694435-139694605				chr6:139694434-139694435;chr6:139694605-139694606		91.92	100.00	89.80	NA	100.00	NA	95.08	94.68	97.56	100.00	93.55	90.91	91.30	95.40	100.00	97.44	84.21	100.00	93.33	96.00	81.82	100.00	100.00	NA	100.00	91.11	100.00	100.00	100.00	NA	94.00	88.14	100.00	91.67	86.67	100.00	97.54	94.34	-3.20	0.722955	1.000000
K	cassette	CCDC53	chr12	-	chr12:102419817-102437882	chr12:102419817-102433645;chr12:102433754-102437882		chr12:102433646-102433753			100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	96.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	96.30	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	0.00	0.530934	0.805615
N	jcn_only_AA	TNIP1	chr5	-	chr5:150410309-150411847;chr5:150410107-150411847;chr5:150410481-150411847;chr5:150410875-150411847;chr5:150410333-150411847	chr5:150410235-150411847		chr5:150410107-150410234;chr5:150410235-150410308;chr5:150410309-150410332;chr5:150410333-150410480;chr5:150410481-150410874	chr5:150410106-150410107;chr5:150410234-150410235;chr5:150410308-150410309;chr5:150410332-150410333;chr5:150410480-150410481		19.30	19.05	20.30	16.59	11.52	18.57	14.06	15.31	15.76	14.57	10.94	18.83	11.86	12.21	16.02	13.98	12.82	16.33	20.00	19.19	20.06	17.55	14.21	16.25	16.04	17.87	18.00	12.79	11.48	15.75	22.53	23.82	18.75	16.64	17.46	19.49	17.39	18.53	1.14	0.584596	0.807990
K	intron_retention		chr16	-	chr16:30106219-30106423				chr16:30106218-30106219;chr16:30106423-30106424		10.17	8.07	11.86	NA	2.86	NA	0.00	9.09	0.00	NA	0.00	NA	3.57	NA	2.50	NA	0.00	NA	10.29	15.79	4.44	NA	3.12	NA	8.26	0.00	6.67	NA	0.00	NA	22.22	14.85	10.84	NA	NA	NA	8.16	10.17	2.01	0.581402	1.000000
N	alternative_donor	HNRNPH3	chr10	+	chr10:70098400-70098896;chr10:70098445-70098896	chr10:70098427-70098896		chr10:70098400-70098426;chr10:70098427-70098444	chr10:70098399-70098400;chr10:70098426-70098427		0.00	0.00	5.26	0.00	0.00	NA	1.82	7.32	0.00	0.00	3.33	3.90	0.00	0.00	0.00	1.06	1.02	0.00	NA	2.17	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.412483	0.675004
N	intron_retention		chrX	-	chrX:69506619-69506835				chrX:69506618-69506619;chrX:69506835-69506836		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	94.12	100.00	100.00	100.00	100.00	0.00	0.608000	1.000000
K	cassette	CLPTM1	chr19	+	chr19:45494204-45495490	chr19:45494204-45494495;chr19:45494632-45495490		chr19:45494496-45494631			99.10	100.00	97.48	94.12	100.00	100.00	100.00	100.00	95.67	98.29	100.00	100.00	100.00	100.00	95.51	100.00	100.00	100.00	100.00	98.88	95.73	100.00	98.36	100.00	91.89	100.00	97.18	96.72	99.00	100.00	96.04	99.39	100.00	97.85	100.00	97.79	100.00	99.55	-0.45	0.818446	0.940342
N	alternative_acceptor	SERBP1	chr1	-	chr1:67890643-67890765;chr1:67890670-67890765	chr1:67890661-67890765		chr1:67890643-67890660;chr1:67890661-67890669	chr1:67890642-67890643;chr1:67890660-67890661		27.50	38.78	28.89	32.43	31.48	25.00	40.97	35.29	35.63	39.08	37.65	33.70	41.14	36.11	42.86	38.67	38.35	41.77	39.29	38.10	41.18	31.00	39.53	32.98	21.74	37.50	39.29	32.10	40.22	34.85	29.41	38.46	29.63	33.75	34.88	29.21	39.03	35.70	-3.33	0.739156	0.902878
K	intron_retention		chr1	-	chr1:153635610-153635690				chr1:153635609-153635610;chr1:153635690-153635691		3.03	4.90	4.65	2.60	0.92	0.00	0.00	0.00	1.11	0.69	0.88	0.00	0.00	0.00	0.88	0.47	0.00	0.00	1.92	0.00	0.00	4.17	4.79	3.53	0.00	1.61	2.63	0.00	2.73	0.88	5.43	8.27	0.00	3.82	3.68	3.55	0.00	0.81	0.81	0.965861	1.000000
N	jcn_only_AA	SIGLEC1	chr20	-	chr20:3673779-3674093	chr20:3673821-3674093		chr20:3673779-3673820	chr20:3673778-3673779		3.64	0.00	0.00	NA	NA	NA	1.18	3.02	1.74	0.00	2.17	1.92	2.45	3.70	1.87	0.00	4.00	4.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.18	0.00	4.76	1.96	3.95	5.26	4.26	NA	5.56	0.00	4.96	0.59	3.33	2.74	0.057680	0.663989
N	alternative_acceptor	SUCLG1	chr2	-	chr2:84658784-84660475	chr2:84659479-84660475		chr2:84658784-84659478	chr2:84658783-84658784		2.70	0.00	7.84	2.94	1.25	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	2.04	1.59	0.00	0.00	0.00	0.00	0.00	5.41	3.41	6.90	0.00	2.78	4.00	3.12	3.57	2.78	0.00	4.92	0.00	2.94	2.15	5.97	0.00	0.00	0.00	0.174745	0.660713
N	cassette	WBSCR22	chr7	+	chr7:73108000-73111934;chr7:73106977-73111934	chr7:73106977-73108321,chr7:73108000-73108321;chr7:73108381-73111934		chr7:73108322-73108380			93.55	96.77	97.62	97.44	98.21	100.00	100.00	100.00	100.00	100.00	98.39	100.00	95.83	93.33	100.00	98.28	97.70	98.33	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	90.32	96.30	92.00	95.12	80.77	84.85	74.23	92.50	82.93	82.69	98.38	93.33	-5.05	0.626018	0.863754
N	jcn_only_AA	SLC16A3	chr17	+	chr17:80195770-80218774;chr17:80195770-80196686	chr17:80195770-80196577		chr17:80196578-80196686;chr17:80196687-80218774	chr17:80196686-80196687;chr17:80218774-80218775		94.83	89.86	93.17	95.20	94.96	91.38	100.00	100.00	98.99	99.57	99.51	97.44	100.00	99.63	99.78	99.40	99.66	96.00	95.97	98.49	96.30	98.21	96.61	92.98	95.03	98.31	98.26	98.67	98.45	98.23	94.57	93.30	90.93	98.03	97.99	94.16	95.50	98.40	2.90	0.279311	0.663989
N	alternative_donor	MRPL52	chr14	+	chr14:23299154-23299261;chr14:23299158-23299261	chr14:23299150-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		94.74	90.38	90.62	91.30	91.18	92.59	100.00	NA	80.00	100.00	100.00	NA	100.00	NA	83.33	84.62	96.67	NA	90.00	82.35	84.09	80.00	80.00	NA	73.08	88.24	90.32	60.00	83.33	81.82	85.71	80.65	91.49	84.62	80.00	76.92	90.94	86.97	-3.96	0.541236	0.780071
K	jcn_only_AA	CAPN1	chr11	+	chr11:64949485-64950372	chr11:64949485-64950171		chr11:64950172-64950372	chr11:64950372-64950373		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	97.22	100.00	94.59	97.46	100.00	100.00	94.12	100.00	100.00	NA	97.50	NA	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.892788	0.962328
K	alternative_acceptor	SLC27A3	chr1	+	chr1:153751950-153752406	chr1:153751950-153752301		chr1:153752302-153752406	chr1:153752406-153752407		85.37	88.89	75.00	90.91	92.59	83.93	92.00	83.02	91.67	88.24	90.91	97.30	84.21	88.64	86.67	NA	100.00	81.25	93.94	92.00	86.54	NA	90.91	NA	86.84	87.50	NA	90.91	91.67	92.68	72.22	NA	85.29	NA	100.00	100.00	87.87	86.44	-1.43	0.278557	0.709013
N	alternative_acceptor		chr11	+	chr11:67810965-67811088;chr11:67810965-67811020	chr11:67810965-67811037		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		92.22	94.44	89.81	NA	93.33	NA	93.02	99.04	100.00	98.33	95.70	100.00	92.31	94.17	97.96	95.92	94.74	92.50	NA	90.77	96.15	90.91	91.67	95.24	84.62	94.44	92.86	93.10	96.77	85.71	86.84	88.46	NA	86.11	91.67	93.33	92.66	93.19	0.53	0.534789	0.815239
K	cassette	RMDN1	chr8	-	chr8:87492562-87498712	chr8:87492562-87497100;chr8:87497191-87498712		chr8:87497101-87497190			90.91	76.19	91.30	NA	82.35	NA	80.00	91.67	80.00	NA	66.67	NA	80.00	100.00	92.31	64.29	100.00	NA	78.95	75.00	81.82	NA	90.00	NA	NA	87.50	92.00	NA	86.67	100.00	NA	90.00	100.00	76.92	90.91	61.54	80.00	90.91	10.91	0.341121	0.709176
N	alternative_acceptor	CDC34	chr19	+	chr19:537148-541338;chr19:537148-538677;chr19:537148-541342	chr19:537148-541345		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	5.00	NA	0.00	0.00	10.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.85	NA	0.00	21.43	0.00	0.00	7.14	0.00	5.26	4.00	10.71	0.00	0.00	4.00	0.00	2.63	2.63	0.337214	0.709013
K	cassette	TRIM33	chr1	-	chr1:114940483-114942078	chr1:114940483-114940561;chr1:114940613-114942078		chr1:114940562-114940612			66.67	63.64	81.82	NA	NA	NA	40.91	48.39	53.33	60.87	57.69	66.67	42.86	50.00	48.15	60.00	71.43	69.57	NA	71.43	50.00	50.00	69.23	60.00	46.43	55.00	71.43	NA	NA	50.00	79.17	64.29	68.75	64.71	57.14	75.00	46.43	60.84	14.41	0.259257	0.709176
K	jcn_only_AA	RNASE1	chr14	-	chr14:21270156-21270955	chr14:21270253-21270955		chr14:21270156-21270252	chr14:21270155-21270156		91.04	87.38	90.24	84.79	85.84	81.78	88.01	88.57	88.34	83.86	83.85	83.66	88.98	89.12	89.82	88.46	85.67	85.83	90.64	93.57	92.77	91.95	90.87	90.30	83.84	89.98	90.33	89.49	89.51	88.64	93.30	91.79	91.76	89.21	89.74	89.13	88.50	90.51	2.02	0.112811	0.663989
K	intron_retention		chr12	-	chr12:57911537-57914200				chr12:57911536-57911537;chr12:57914200-57914201		7.02	4.76	7.69	11.11	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	6.90	3.70	5.00	4.76	4.55	4.00	23.81	0.89	2.63	5.00	3.57	0.00	4.26	7.55	12.73	11.43	2.56	9.68	5.83	2.29	-3.54	0.261120	1.000000
N	jcn_only_AA	ZNF544	chr19	+	chr19:7606954-7607517	chr19:7606954-7607446		chr19:7607447-7607517	chr19:7607517-7607518		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	90.91	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention		chr19	+	chr19:50173746-50176954				chr19:50173745-50173746;chr19:50176954-50176955		7.89	9.09	4.44	8.33	3.92	4.55	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	2.38	6.90	3.70	NA	6.67	NA	16.67	5.88	2.70	NA	0.00	NA	11.11	7.02	3.33	7.69	5.26	0.00	2.85	6.39	3.54	0.860694	1.000000
N	alternative_donor	ENG	chr9	-	chr9:130578333-130579432;chr9:130578333-130579412;chr9:130578333-130579403;chr9:130578333-130579427	chr9:130578333-130579108		chr9:130579109-130579403;chr9:130579404-130579412;chr9:130579413-130579427;chr9:130579428-130579432	chr9:130579403-130579404;chr9:130579412-130579413;chr9:130579427-130579428;chr9:130579432-130579433		1.44	1.69	2.10	1.45	0.95	0.00	0.00	0.51	0.00	0.00	0.39	0.00	0.33	0.43	1.90	0.54	0.31	0.00	0.56	1.88	1.13	3.77	2.34	10.00	1.15	2.11	1.72	2.78	1.58	3.82	2.00	2.36	0.59	1.02	2.84	5.31	0.57	1.66	1.08	0.119191	0.530980
N	jcn_only_AD	ANKRD13D	chr11	+	chr11:67067971-67068460;chr11:67067595-67068460	chr11:67068367-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		0.00	2.51	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	6.67	NA	0.00	NA	0.00	0.00	1.39	0.00	1.15	0.00	2.52	0.00	1.96	0.00	0.00	NA	0.00	0.00	1.88	0.00	1.35	0.00	0.94	0.00	-0.94	0.079171	0.627804
N	jcn_only_AA	IFFO1	chr12	-	chr12:6649751-6650677	chr12:6649755-6650677		chr12:6649751-6649754	chr12:6649750-6649751		100.00	96.06	95.35	NA	100.00	NA	100.00	100.00	100.00	90.00	100.00	NA	95.18	100.00	100.00	100.00	96.55	NA	98.44	100.00	100.00	100.00	97.35	100.00	100.00	100.00	100.00	100.00	96.21	100.00	100.00	100.00	97.18	100.00	100.00	100.00	97.81	100.00	2.19	0.044991	0.663989
N	alternative_acceptor	MAP3K11	chr11	-	chr11:65375288-65375392;chr11:65375169-65375392;chr11:65375165-65375392	chr11:65375235-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	2.27	2.56	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	CCDC115	chr2	-	chr2:131096806-131098480	chr2:131096806-131097132;chr2:131097336-131098480		chr2:131097133-131097335			0.00	2.50	6.29	NA	8.33	NA	3.70	6.15	7.42	3.70	5.56	6.67	8.00	5.88	9.33	6.98	5.56	5.56	0.00	4.55	7.14	4.55	6.52	8.33	NA	4.08	3.62	0.00	7.14	8.00	3.57	3.96	0.00	2.78	2.70	5.77	2.50	4.31	1.81	0.512058	0.791208
K	cassette	YTHDF1	chr20	-	chr20:61828087-61845215	chr20:61828087-61833638;chr20:61835160-61845215		chr20:61833639-61835159			100.00	75.00	98.63	88.89	95.83	77.78	100.00	100.00	97.83	96.97	98.70	94.29	100.00	96.88	100.00	97.25	95.24	94.44	NA	94.12	85.71	100.00	94.83	96.49	NA	100.00	100.00	100.00	88.24	96.77	96.88	96.77	88.24	96.61	98.41	94.52	94.12	98.44	4.32	0.316309	0.709176
K	alternative_donor	DBNL	chr7	+	chr7:44084442-44089823;chr7:44084420-44089823	chr7:44084466-44089823		chr7:44084420-44084441;chr7:44084442-44084465	chr7:44084419-44084420;chr7:44084441-44084442		0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.67	0.00	1.26	0.00	0.37	0.43	0.00	0.35	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	1.17	0.00	-1.17	0.126567	0.540946
K	cassette	RNF10	chr12	+	chr12:120972772-120984207	chr12:120972772-120977170;chr12:120977272-120984207		chr12:120977171-120977271			2.08	0.00	1.61	NA	NA	NA	6.12	1.54	0.00	3.03	1.89	4.55	2.08	4.88	3.51	4.65	1.85	2.27	NA	0.00	NA	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.72	1.04	0.77	-0.27	0.716278	0.899102
N	cassette	U2AF2	chr19	+	chr19:56170712-56171881	chr19:56170712-56171542;chr19:56171588-56171881		chr19:56171543-56171587			98.51	100.00	96.03	NA	95.83	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	100.00	96.92	98.31	100.00	100.00	100.00	97.59	100.00	100.00	100.00	97.30	97.56	100.00	98.75	100.00	97.78	100.00	100.00	0.00	0.491842	0.776514
K	intron_retention	GGA1	chr22	+	chr22:38013005-38014454				chr22:38013004-38013005;chr22:38014454-38014455		3.12	15.38	8.20	NA	8.33	NA	4.55	0.00	4.35	0.00	4.65	0.00	6.90	4.55	16.67	0.00	10.20	NA	NA	2.86	8.33	9.09	13.33	15.00	0.00	16.13	6.98	15.00	17.14	NA	11.11	12.50	NA	13.21	14.06	19.23	5.72	3.83	-1.89	0.973336	1.000000
N	cassette	CC2D1B	chr1	-	chr1:52820612-52821442	chr1:52820612-52821279;chr1:52821339-52821442		chr1:52821280-52821338			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	intron_retention	DDX5	chr17	-	chr17:62498342-62498556				chr17:62498341-62498342;chr17:62498556-62498557		6.00	0.00	7.04	1.43	1.11	21.74	0.52	2.35	2.06	0.32	0.79	0.00	2.13	2.05	2.10	1.07	1.27	0.57	5.88	7.11	2.46	5.87	2.91	6.99	16.67	6.49	6.62	2.90	2.30	2.60	7.27	5.64	9.76	4.75	4.08	9.73	4.00	6.25	2.24	0.397092	1.000000
K	intron_retention	NELFCD	chr20	+	chr20:57568600-57568678				chr20:57568599-57568600;chr20:57568678-57568679		66.67	25.00	51.85	61.54	38.89	NA	16.22	88.24	28.57	61.76	55.56	50.00	30.95	80.00	20.00	51.16	26.83	NA	27.78	62.50	54.55	59.09	43.18	58.33	NA	75.00	55.56	58.33	52.38	69.23	70.00	44.00	23.81	52.17	52.94	62.50	25.00	72.50	47.50	0.000087	0.172516
K	alternative_acceptor	MBD6,MYL6B	chr12	+	chr12:56549377-56551251	chr12:56549377-56549701		chr12:56549702-56551251	chr12:56551251-56551252		8.00	2.74	8.16	0.00	4.26	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	NA	2.99	5.00	2.73	0.00	3.70	0.00	3.74	5.26	4.84	0.00	2.50	0.00	10.53	6.52	3.03	0.00	3.70	0.00	2.87	5.13	2.26	0.189553	0.660713
N	alternative_donor	ZNF317	chr19	+	chr19:9269585-9273730	chr19:9273637-9273730		chr19:9269585-9273636	chr19:9269584-9269585		93.75	50.00	100.00	NA	80.00	NA	100.00	100.00	100.00	100.00	100.00	94.44	87.50	100.00	95.65	90.70	94.74	86.67	NA	93.75	54.55	89.47	92.59	90.48	NA	100.00	100.00	76.92	83.33	61.54	82.35	78.12	30.77	87.10	92.86	89.29	68.75	96.88	28.12	0.180967	0.563271
K	intron_retention	MZT2B	chr2	+	chr2:130940026-130940199				chr2:130940025-130940026;chr2:130940199-130940200		0.00	2.42	7.32	1.75	4.49	2.50	3.70	6.06	8.51	0.85	2.08	0.00	1.64	0.00	2.33	3.91	2.34	0.00	1.66	0.00	3.47	1.54	2.86	0.00	2.98	4.00	6.25	1.25	2.69	0.82	2.70	1.72	2.33	1.59	1.25	1.05	2.38	1.35	-1.02	0.989546	1.000000
N	alternative_acceptor		chr12	+	chr12:6570105-6570289;chr12:6570105-6570324;chr12:6570105-6570436	chr12:6570105-6571199		chr12:6570290-6570324;chr12:6570325-6570436;chr12:6570437-6571199	chr12:6570324-6570325;chr12:6570436-6570437;chr12:6571199-6571200		86.67	94.96	87.76	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	99.32	97.96	96.20	100.00	97.22	100.00	97.69	100.00	97.06	100.00	100.00	100.00	94.44	95.24	98.10	93.94	91.30	97.01	98.71	98.98	0.27	0.453634	0.758758
N	alternative_donor	AKNA,CDC26	chr9	-	chr9:116029720-116034706	chr9:116029720-116033086		chr9:116033087-116034706	chr9:116034706-116034707		5.13	6.29	2.61	1.33	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.66	2.63	1.52	0.00	2.11	0.00	7.37	1.59	2.26	0.00	1.16	0.00	5.00	3.79	7.69	1.23	1.52	1.52	5.97	2.11	-3.86	0.255457	0.624867
K	jcn_only_AD	C11orf31,RP11-691N7.6	chr11	+	chr11:57509700-57510334	chr11:57509720-57510334		chr11:57509700-57509719	chr11:57509699-57509700		100.00	94.88	97.01	95.93	96.81	96.80	98.84	96.55	97.56	100.00	100.00	100.00	98.11	100.00	96.30	100.00	100.00	100.00	97.08	100.00	98.77	98.61	97.44	100.00	94.56	90.91	93.18	97.00	96.52	97.39	90.20	94.44	97.63	96.77	97.67	97.22	97.35	98.28	0.92	0.785769	0.899198
N	cassette	ZBTB7B	chr1	+	chr1:154975420-154986490;chr1:154981463-154987130;chr1:154980759-154987130;chr1:154975420-154987130	chr1:154980759-154982733,chr1:154981463-154982733,chr1:154975420-154982733;chr1:154982874-154986490,chr1:154982874-154987130		chr1:154982734-154982873			18.18	9.09	23.53	NA	NA	NA	24.00	32.76	20.00	NA	30.30	NA	29.85	28.57	26.32	23.81	35.09	NA	NA	22.22	NA	NA	13.64	NA	5.00	17.50	17.14	NA	NA	NA	NA	25.00	NA	NA	21.05	NA	16.55	22.22	5.67	0.352936	0.709176
K	intron_retention	AC005786.7	chr19	+	chr19:3544653-3557458				chr19:3544652-3544653;chr19:3557458-3557459		89.66	100.00	92.86	89.51	87.33	100.00	91.56	92.76	92.31	96.45	100.00	96.97	92.16	100.00	88.51	90.48	97.53	100.00	94.92	100.00	100.00	100.00	100.00	90.62	100.00	100.00	100.00	88.42	91.86	93.46	100.00	91.67	100.00	100.00	85.29	92.35	97.46	100.00	2.54	0.912860	1.000000
K	alternative_acceptor	TNK2	chr3	-	chr3:195597276-195599146;chr3:195597077-195599146	chr3:195597250-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		1.85	8.70	3.70	NA	NA	NA	0.00	3.77	4.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	3.92	NA	NA	8.00	0.00	0.00	3.51	0.00	0.00	7.69	NA	0.00	0.00	NA	6.67	NA	0.00	0.00	2.68	2.68	1.000000	1.000000
N	alternative_donor	AP3D1	chr19	-	chr19:2111332-2111677	chr19:2111332-2111670		chr19:2111671-2111677	chr19:2111677-2111678		5.00	4.08	1.89	0.00	4.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	5.26	1.92	3.33	2.13	3.30	7.02	0.00	0.00	3.51	0.00	1.92	0.00	1.92	4.00	0.00	5.17	3.28	4.49	0.00	0.96	0.96	0.949416	0.984606
K	jcn_only_AA	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31498956-31499072	chr6:31498975-31499072		chr6:31498956-31498974	chr6:31498955-31498956		93.87	94.11	94.93	94.71	95.30	91.94	97.78	96.00	94.94	98.18	95.52	98.57	97.90	92.98	97.14	95.37	97.87	98.39	94.52	96.09	96.94	95.80	94.86	93.57	94.72	94.16	95.70	95.83	92.93	92.07	92.09	95.45	95.36	95.35	95.42	92.03	95.04	94.02	-1.02	0.137307	0.663989
K	cassette	TNFRSF1A	chr12	-	chr12:6439878-6442234	chr12:6439878-6440018;chr12:6440093-6442234		chr12:6440019-6440092			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.93	96.39	98.31	95.91	94.52	98.15	91.89	91.71	75.27	83.33	84.39	88.75	100.00	94.92	91.41	94.49	88.97	93.13	94.64	92.75	81.82	90.62	90.12	93.66	97.97	95.66	-2.31	0.691144	0.886422
K	intron_retention	MAEA	chr4	+	chr4:1330783-1332209				chr4:1330782-1330783;chr4:1332209-1332210		6.25	6.38	8.45	NA	0.00	NA	0.00	0.00	0.00	0.00	1.12	0.00	1.32	0.00	0.00	0.00	1.12	0.00	NA	6.45	0.00	11.11	5.38	13.04	NA	6.06	6.78	0.00	2.04	0.00	2.04	5.68	0.00	5.45	4.90	9.62	0.66	4.05	3.39	0.697771	1.000000
N	alternative_last_exon	B3GAT3	chr11	-	chr11:62383272-62384458	chr11:62384269-62384458	chr11:62382768-62383271	chr11:62383978-62384268			98.00	98.99	94.37	96.30	98.15	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	90.62	98.92	96.43	98.28	87.50	83.08	100.00	98.61	100.00	98.08	94.74	88.46	90.74	88.89	94.44	97.22	96.97	98.69	99.00	0.31	0.730379	0.828356
N	jcn_only_AA	FMNL1	chr17	+	chr17:43319002-43319340;chr17:43319002-43319213;chr17:43319002-43319320;chr17:43319002-43319293;chr17:43319002-43319231	chr17:43319002-43319228		chr17:43319214-43319228;chr17:43319229-43319231;chr17:43319232-43319293;chr17:43319294-43319320;chr17:43319321-43319340	chr17:43319228-43319229;chr17:43319231-43319232;chr17:43319293-43319294;chr17:43319320-43319321;chr17:43319340-43319341		3.72	5.81	3.08	0.00	1.49	NA	0.00	2.40	1.19	4.17	1.85	0.00	0.00	2.37	0.55	0.00	2.60	0.00	0.00	4.11	0.00	6.06	1.46	3.57	0.00	5.03	1.40	0.00	2.14	3.33	2.63	3.82	0.00	2.67	3.23	5.33	0.00	3.17	3.17	0.058194	0.663989
N	alternative_acceptor	RHOQ	chr2	+	chr2:46803796-46808066;chr2:46803796-46807747;chr2:46803796-46807695;chr2:46803796-46827732;chr2:46803796-46803887	chr2:46803796-46808070		chr2:46803888-46807695;chr2:46807696-46807747;chr2:46807748-46808066;chr2:46808067-46808070;chr2:46808071-46827732	chr2:46807695-46807696;chr2:46807747-46807748;chr2:46808066-46808067;chr2:46808070-46808071;chr2:46827732-46827733		0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.178349	0.660713
K	intron_retention	HM13	chr20	+	chr20:30154099-30155880				chr20:30154098-30154099;chr20:30155880-30155881		0.00	8.51	7.69	0.00	3.33	NA	0.00	0.00	0.00	6.67	3.70	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	6.67	3.33	0.00	12.00	NA	NA	8.33	12.00	8.33	11.11	9.09	12.50	0.00	0.00	8.33	16.67	12.00	0.00	3.33	3.33	0.317295	1.000000
N	jcn_only_AD		chr1	-	chr1:53681729-53682449;chr1:53681729-53682451	chr1:53681729-53682453		chr1:53682450-53682451;chr1:53682452-53682453	chr1:53682451-53682452;chr1:53682453-53682454		100.00	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.33	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.490682	0.735270
K	cassette	AOAH	chr7	-	chr7:36552987-36561644	chr7:36552987-36554077;chr7:36554197-36561644		chr7:36554078-36554196			5.26	3.85	4.04	3.76	2.63	3.96	4.00	2.74	3.38	4.08	2.63	5.45	2.44	5.26	6.90	0.00	4.17	0.00	3.53	5.77	3.53	3.03	3.98	4.94	1.89	3.95	4.61	0.00	2.78	3.12	3.95	5.39	2.96	3.03	2.48	5.06	3.25	4.61	1.36	0.040013	0.500342
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160101320-160103505;chr6:160100331-160103505;chr6:160016237-160103505;chr6:160100398-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160101368-160103505;chr6:160100377-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160100367-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		4.26	0.00	0.64	3.14	2.50	0.61	NA	1.56	1.19	0.95	0.00	1.53	NA	1.92	1.16	1.09	0.00	0.94	4.55	2.13	7.05	1.88	2.27	0.39	0.00	0.93	1.13	2.13	3.85	2.53	1.90	0.81	4.76	1.01	1.01	1.36	2.27	1.91	-0.36	0.889788	0.961426
N	jcn_only_AA	ACO2	chr22	+	chr22:41911922-41913530;chr22:41911922-41913300	chr22:41911922-41913600		chr22:41913301-41913530;chr22:41913531-41913600	chr22:41913530-41913531;chr22:41913600-41913601		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	CPNE1	chr20	-	chr20:34214723-34215201;chr20:34214749-34215201;chr20:34214775-34215201	chr20:34214726-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		89.53	89.63	92.86	87.50	87.80	88.00	17.02	21.05	20.00	22.73	10.53	10.00	92.50	89.47	87.80	92.59	93.75	100.00	84.75	86.67	85.71	74.19	79.66	82.76	89.25	92.00	88.89	77.78	81.63	82.00	83.33	80.00	84.85	77.78	82.86	81.82	87.05	88.07	1.02	0.967981	0.991751
K	jcn_only_AA	EWSR1	chr22	+	chr22:29668421-29669726;chr22:29668421-29674119	chr22:29668421-29669729					84.48	84.44	87.36	NA	80.00	NA	89.62	87.37	91.24	89.12	90.37	88.95	86.42	87.35	89.26	87.87	90.22	88.11	NA	86.67	90.00	83.82	83.75	85.71	70.00	84.73	86.84	85.94	85.90	80.00	83.64	85.59	NA	89.08	89.68	82.14	85.43	85.70	0.27	0.530560	0.770089
N	jcn_only_AA	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075825-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		0.00	0.00	6.82	NA	4.35	NA	5.80	11.32	6.67	9.30	12.50	12.82	2.99	12.50	5.80	5.45	7.69	4.08	0.00	2.00	0.00	0.00	15.62	0.00	NA	0.00	4.65	11.11	8.82	5.88	0.00	4.76	0.00	0.00	3.03	7.50	0.00	1.00	1.00	0.376073	0.663989
K	jcn_only_AA	GCHFR	chr15	+	chr15:41056415-41058057	chr15:41056415-41058024		chr15:41058025-41058057	chr15:41058057-41058058		100.00	90.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	95.45	100.00	100.00	0.00	0.947056	0.981281
N	alternative_acceptor	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139921867-139928490;chr5:139921867-139927230	chr5:139921867-139924405		chr5:139924406-139927230;chr5:139927231-139928490	chr5:139927230-139927231;chr5:139928490-139928491		4.55	3.12	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	2.86	0.00	0.00	0.00	0.00	4.00	0.00	4.55	0.00	8.33	0.00	0.00	0.00	0.381622	0.709013
K	coord_cassette	ITGB1BP1	chr2	-	chr2:9552535-9563501	chr2:9552535-9554306;chr2:9554386-9558754;chr2:9558862-9563501		chr2:9554307-9554385;chr2:9558755-9558861			70.59	61.11	100.00	NA	86.67	NA	92.86	88.24	100.00	88.89	92.94	90.57	93.75	94.12	100.00	93.88	94.55	100.00	NA	68.75	77.27	89.47	87.10	100.00	NA	NA	60.00	93.33	94.12	100.00	63.64	57.14	81.82	91.67	92.00	87.50	87.34	70.59	-16.75	0.601035	0.771646
N	alternative_acceptor		chr19	+	chr19:1074407-1074657	chr19:1074407-1074612		chr19:1074613-1074657	chr19:1074657-1074658		100.00	93.75	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	91.30	100.00	100.00	0.00	0.391002	0.709013
N	cassette	EVL	chr14	+	chr14:100563996-100572360;chr14:100563996-100589875	chr14:100563996-100568640;chr14:100568717-100589875,chr14:100568717-100572360		chr14:100568641-100568716			0.00	0.00	NA	NA	0.00	NA	0.89	3.03	0.00	0.00	1.52	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	5.13	NA	NA	NA	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.499759	0.783344
K	jcn_only_AA	SNAP47	chr1	+	chr1:227954785-227968227;chr1:227954785-227958271	chr1:227954785-227963489		chr1:227958272-227963489;chr1:227963490-227968227	chr1:227963489-227963490;chr1:227968227-227968228		0.00	0.00	0.00	NA	0.00	NA	5.26	NA	0.00	0.00	0.00	NA	5.26	0.00	0.00	0.00	4.17	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.174688	0.663989
K	intron_retention	DDX39A	chr19	-	chr19:14523491-14523824				chr19:14523490-14523491;chr19:14523824-14523825		10.87	10.87	3.70	5.56	2.63	NA	2.50	4.55	7.41	4.62	2.41	0.00	1.18	0.00	3.23	0.98	2.38	0.00	7.14	4.44	5.26	6.67	4.71	10.00	NA	9.09	7.89	4.44	5.08	7.14	16.67	5.13	0.00	4.35	2.33	9.23	2.50	6.82	4.32	0.850833	1.000000
N	alternative_acceptor		chr7	+	chr7:44805179-44805565;chr7:44805179-44805886;chr7:44805179-44809053	chr7:44805179-44805762		chr7:44805566-44805762;chr7:44805763-44805886;chr7:44805887-44809053	chr7:44805762-44805763;chr7:44805886-44805887;chr7:44809053-44809054		96.97	94.03	85.91	88.57	92.16	79.55	83.33	82.61	83.16	86.96	88.46	76.92	84.00	87.50	88.00	94.12	93.33	81.25	84.13	87.50	85.34	81.82	90.41	87.88	90.91	75.86	91.30	85.29	88.37	78.57	81.71	88.10	86.79	86.00	96.05	86.11	85.46	85.06	-0.41	0.604436	0.848883
N	coord_cassette	PLXND1	chr3	-	chr3:129297277-129304794	chr3:129297277-129302409;chr3:129302513-129302967;chr3:129303077-129304794		chr3:129302410-129302512;chr3:129302968-129303076			100.00	100.00	94.74	NA	NA	NA	97.37	100.00	97.44	97.78	97.50	100.00	100.00	100.00	100.00	100.00	97.73	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	NA	90.91	NA	NA	NA	NA	NA	100.00	91.67	100.00	100.00	0.00	0.391002	0.647127
N	jcn_only_AA	DHX58	chr17	-	chr17:40254310-40255625	chr17:40254331-40255625		chr17:40254310-40254330	chr17:40254309-40254310		99.21	100.00	100.00	100.00	NA	98.17	95.45	98.99	98.56	100.00	NA	99.28	94.12	98.30	98.83	100.00	100.00	100.00	92.31	99.22	97.62	NA	100.00	98.91	100.00	99.17	100.00	100.00	NA	98.57	98.51	96.15	100.00	100.00	NA	98.90	97.72	99.08	1.36	0.232832	0.663989
N	alternative_acceptor	IRF5	chr7	+	chr7:128588176-128588243;chr7:128588176-128588263	chr7:128588176-128588283		chr7:128588244-128588263;chr7:128588264-128588283	chr7:128588263-128588264;chr7:128588283-128588284		0.00	0.00	0.00	NA	6.67	NA	9.52	5.88	7.41	6.90	7.69	5.45	6.49	9.21	6.85	5.77	4.81	9.90	0.00	4.21	6.25	4.48	5.39	8.07	0.00	8.00	0.00	6.38	7.21	6.16	7.58	7.69	0.00	6.49	3.90	6.41	0.00	6.73	6.73	0.185849	0.660713
K	jcn_only_AD	NDUFS8	chr11	+	chr11:67798201-67799618;chr11:67798618-67799618;chr11:67798429-67799618	chr11:67798345-67799618		chr11:67798201-67798344;chr11:67798345-67798428;chr11:67798429-67798617	chr11:67798200-67798201;chr11:67798344-67798345;chr11:67798428-67798429		3.03	0.00	8.16	0.00	1.89	0.00	3.90	NA	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	1.89	0.00	5.71	6.67	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	3.57	3.12	0.00	0.00	0.00	1.74	0.00	-1.74	0.353962	0.657607
K	jcn_only_AA	PSPC1	chr13	-	chr13:20249125-20251863	chr13:20249794-20251863					66.67	65.00	53.85	30.77	42.86	48.94	NA	66.67	46.15	NA	NA	NA	NA	50.00	58.82	50.00	NA	50.00	44.44	64.71	30.00	64.29	45.00	41.18	45.45	45.83	62.50	33.33	26.67	41.94	50.00	59.09	41.94	43.48	50.00	68.18	44.95	57.35	12.41	0.266124	0.663989
K	intron_retention	IL10RA	chr11	+	chr11:117866426-117869429				chr11:117866425-117866426;chr11:117869429-117869430		4.57	12.96	3.96	NA	6.67	0.00	0.84	0.89	0.25	0.76	1.06	0.39	0.98	1.01	1.33	1.24	1.41	0.46	8.33	2.75	0.00	2.99	3.80	2.72	18.52	2.74	4.27	3.36	6.35	2.11	4.09	3.41	10.00	4.65	6.10	2.22	9.16	2.75	-6.42	0.575160	1.000000
N	jcn_only_AD		chr16	-	chr16:4438633-4440336;chr16:4438633-4439190	chr16:4438633-4445289		chr16:4439191-4440336;chr16:4440337-4445289	chr16:4440336-4440337;chr16:4445289-4445290		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.44	100.00	97.40	95.83	97.96	100.00	100.00	96.55	97.30	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.657607
K	intron_retention	HNRNPDL	chr4	-	chr4:83347787-83348342				chr4:83347786-83347787;chr4:83348342-83348343		12.20	0.00	14.52	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	8.00	2.20	7.59	0.00	3.12	4.35	0.00	0.00	0.00	11.11	14.29	0.00	7.25	8.62	8.82	0.00	4.59	4.59	0.210992	1.000000
K	alternative_donor	PANK2	chr20	+	chr20:3889553-3891223;chr20:3888783-3891223	chr20:3888926-3891223		chr20:3888783-3888925;chr20:3888926-3889552	chr20:3888782-3888783;chr20:3888925-3888926		56.14	50.00	63.41	NA	40.00	NA	62.16	66.13	54.00	71.43	83.33	76.92	71.43	58.06	55.77	66.67	69.57	64.71	NA	56.82	57.14	NA	55.56	53.85	NA	45.90	50.00	58.82	73.33	40.74	58.70	57.14	40.00	55.56	65.62	53.97	56.08	57.44	1.36	0.892724	0.977754
N	jcn_only_AD	EIF4A2	chr3	+	chr3:186506202-186506913;chr3:186506210-186506913	chr3:186506206-186506913		chr3:186506202-186506205;chr3:186506206-186506209	chr3:186506201-186506202;chr3:186506205-186506206		37.04	38.89	33.33	31.82	32.26	30.77	33.33	37.50	63.64	42.86	43.48	50.00	45.83	45.00	54.17	46.94	50.00	50.00	NA	25.81	26.32	37.50	40.85	33.85	NA	38.46	34.21	42.86	55.88	44.44	18.97	25.00	45.45	36.26	34.43	34.15	42.17	37.27	-4.90	0.186776	0.657607
K	coord_cassette	RAB31	chr18	+	chr18:9792233-9845578	chr18:9792233-9814016;chr18:9814089-9815112;chr18:9815220-9845578		chr18:9814017-9814088;chr18:9815113-9815219			99.10	91.30	97.66	100.00	100.00	90.91	100.00	98.63	99.19	98.95	98.66	98.92	99.56	100.00	98.67	100.00	100.00	97.59	100.00	97.89	97.62	100.00	100.00	100.00	NA	97.98	98.63	100.00	100.00	100.00	100.00	96.05	100.00	100.00	100.00	98.45	100.00	98.86	-1.14	0.686062	0.841098
K	intron_retention	MAEA	chr4	+	chr4:1332406-1332861				chr4:1332405-1332406;chr4:1332861-1332862		4.65	0.00	3.75	0.00	6.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.98	0.00	0.00	2.13	3.70	5.56	0.94	3.57	0.00	2.38	4.55	0.00	1.52	0.00	8.47	5.49	7.41	2.56	1.65	5.97	0.00	2.25	2.25	0.567344	1.000000
K	cassette	CDK4	chr12	-	chr12:58145126-58145957	chr12:58145126-58145282;chr12:58145520-58145957		chr12:58145283-58145519			100.00	100.00	93.33	100.00	87.10	NA	100.00	100.00	100.00	95.74	95.00	93.02	100.00	100.00	100.00	97.24	93.33	94.59	100.00	100.00	100.00	92.31	87.93	85.71	NA	NA	95.45	95.74	98.28	100.00	NA	100.00	92.31	90.74	88.89	85.37	100.00	100.00	0.00	0.373901	0.709176
N	coord_cassette	CTB-50L17.10	chr19	+	chr19:4498913-4501202	chr19:4498913-4499487;chr19:4499633-4499647;chr19:4499717-4501202		chr19:4499488-4499632;chr19:4499648-4499716			100.00	100.00	96.61	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.69	97.14	98.41	NA	100.00	NA	98.31	100.00	97.06	100.00	100.00	100.00	100.00	98.51	97.64	100.00	100.00	95.65	99.16	100.00	0.84	0.410494	0.661940
K	intron_retention	RBM3	chrX	+	chrX:48435498-48435852				chrX:48435497-48435498;chrX:48435852-48435853		2.22	0.00	3.12	0.00	0.78	0.00	0.00	0.00	1.61	0.35	0.97	0.70	0.49	1.22	1.52	0.94	0.32	0.67	0.00	2.88	1.72	2.19	1.68	2.65	0.00	3.51	1.00	1.92	2.42	1.18	8.33	4.44	0.00	1.67	1.83	2.01	0.00	2.55	2.55	0.305501	1.000000
N	jcn_only_AA	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083141;chr19:1083066-1083151	chr19:1083066-1083274		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		15.91	0.00	7.25	7.69	7.58	11.76	0.00	0.00	8.45	17.86	18.46	0.00	7.92	9.84	8.49	0.00	13.89	21.43	12.28	0.00	10.26	7.14	6.31	13.64	0.00	10.34	0.00	15.79	8.62	4.17	10.00	0.00	18.46	3.70	0.00	0.00	3.96	9.92	5.96	0.769881	0.896803
N	alternative_donor	LSM6	chr4	+	chr4:147097496-147104063;chr4:147097590-147104063;chr4:147097014-147104063	chr4:147096964-147104063		chr4:147096964-147097013;chr4:147097014-147097495;chr4:147097496-147097589	chr4:147096963-147096964;chr4:147097013-147097014;chr4:147097495-147097496		100.00	100.00	95.95	100.00	100.00	NA	100.00	100.00	95.24	100.00	97.92	100.00	93.88	100.00	96.97	97.73	100.00	100.00	100.00	100.00	96.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	DNAJB2	chr2	+	chr2:220147958-220148140				chr2:220147957-220147958;chr2:220148140-220148141		1.61	0.00	6.25	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.38	0.00	0.00	1.72	0.00	0.00	0.00	3.85	0.00	2.04	0.00	2.04	5.88	0.00	0.00	2.22	0.00	0.00	0.81	0.81	0.476720	1.000000
N	mutually_exclusive	AIF1	chr6	+	chr6:31583360-31583880,chr6:31583923-31584120	chr6:31583360-31583446,chr6:31583514-31584120	chr6:31583881-31583922	chr6:31583447-31583513			94.12	92.71	100.00	100.00	87.84	100.00	80.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	83.33	NA	85.25	100.00	83.33	91.67	77.27	87.88	89.83	88.57	97.22	80.00	86.49	83.33	100.00	92.86	88.00	91.67	92.31	85.14	88.00	97.06	9.06	0.049886	0.149659
N	jcn_only_AA	TATDN3	chr1	+	chr1:212981191-212985568;chr1:212981191-212985592;chr1:212981191-212985635	chr1:212981191-212985589		chr1:212985569-212985589;chr1:212985590-212985592;chr1:212985593-212985635	chr1:212985589-212985590;chr1:212985592-212985593;chr1:212985635-212985636		36.67	41.18	35.29	NA	NA	NA	62.50	39.13	38.89	NA	53.85	NA	47.37	55.56	50.00	NA	60.00	NA	40.00	40.00	41.67	NA	NA	NA	27.27	41.94	36.67	NA	NA	NA	45.45	26.92	38.46	NA	40.00	NA	40.59	40.97	0.38	0.953877	0.984403
K	intron_retention	FXR1	chr3	+	chr3:180688147-180693100				chr3:180688146-180688147;chr3:180693100-180693101		0.00	0.00	22.22	NA	0.00	NA	6.67	6.25	12.50	NA	11.11	0.00	5.88	0.00	6.90	5.88	5.56	NA	0.00	5.00	0.00	0.00	0.00	9.09	NA	0.00	3.57	NA	0.00	0.00	8.33	5.88	0.00	6.25	0.00	9.09	0.00	2.50	2.50	0.862132	1.000000
K	cassette	PTPN2	chr18	-	chr18:12785844-12794382	chr18:12785844-12793480;chr18:12793574-12794382		chr18:12793481-12793573			4.17	4.55	3.46	4.21	5.33	2.73	0.00	3.37	2.63	5.26	0.00	4.35	7.14	2.27	3.11	4.41	8.70	2.56	4.35	5.04	2.95	4.82	6.00	5.30	1.67	2.73	4.76	2.76	8.89	2.39	3.75	3.91	2.22	5.81	6.82	2.50	3.29	3.56	0.27	0.840233	0.946809
N	jcn_only_AA	PRICKLE4,TOMM6	chr6	+	chr6:41757075-41757305;chr6:41757075-41757246	chr6:41757075-41757268		chr6:41757247-41757268;chr6:41757269-41757305	chr6:41757268-41757269;chr6:41757305-41757306		46.58	44.32	43.54	28.85	33.21	29.71	33.59	37.04	38.41	30.57	29.41	28.03	35.37	29.41	42.79	29.83	30.38	20.25	31.32	38.96	35.20	32.10	31.82	29.50	29.10	38.46	43.07	26.35	26.74	25.84	33.72	41.32	31.46	31.84	35.78	31.00	32.53	37.75	5.22	0.348616	0.663989
N	alternative_acceptor	ACO2	chr22	+	chr22:41913636-41914484	chr22:41913636-41913946		chr22:41913947-41914484	chr22:41914484-41914485		2.00	2.04	1.61	0.00	4.17	NA	0.00	0.00	2.33	0.00	0.66	0.00	0.00	0.00	0.00	0.79	0.69	0.00	0.00	2.38	0.00	3.85	1.98	3.03	0.00	3.85	3.85	3.12	3.70	0.00	0.00	2.08	5.56	1.79	0.97	0.76	0.00	1.00	1.00	0.928299	0.978996
K	intron_retention	PIH1D1	chr19	-	chr19:49951166-49951257				chr19:49951165-49951166;chr19:49951257-49951258		9.23	13.11	13.41	15.38	12.50	12.24	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	4.92	0.00	0.00	0.00	9.89	9.30	9.80	11.76	15.69	10.00	13.75	14.29	15.48	15.00	16.22	10.34	17.31	19.72	10.53	3.33	11.11	6.67	10.21	9.27	-0.95	0.892083	1.000000
N	cassette	CD47	chr3	-	chr3:107766140-107770785;chr3:107768499-107776323;chr3:107766140-107776323	chr3:107768499-107769424,chr3:107766140-107769424;chr3:107769450-107776323,chr3:107769450-107770785		chr3:107769425-107769449			9.70	11.16	12.08	15.69	15.96	17.76	2.99	4.09	3.23	15.13	11.52	13.81	2.19	3.63	4.68	11.81	12.43	16.92	8.88	7.09	7.92	14.10	10.91	9.85	5.65	5.08	6.58	8.33	5.58	9.92	8.81	12.74	11.16	11.40	9.62	12.85	7.27	6.08	-1.18	0.760847	0.925284
K	intron_retention		chr22	+	chr22:20939303-20939387				chr22:20939302-20939303;chr22:20939387-20939388		8.24	14.75	6.06	6.06	10.00	7.14	0.00	0.00	0.00	0.99	0.98	1.54	0.00	1.98	0.79	0.00	2.86	0.00	11.76	7.41	5.66	6.78	12.50	9.30	0.00	5.69	6.67	5.56	8.93	7.23	8.11	7.53	11.11	9.09	8.43	6.57	5.55	6.55	1.00	0.782896	1.000000
K	intron_retention		chr17	+	chr17:4648671-4649113				chr17:4648670-4648671;chr17:4649113-4649114		0.00	0.00	5.88	3.57	2.74	2.38	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	2.33	NA	NA	NA	2.04	6.06	6.25	7.14	0.00	0.00	3.23	9.76	3.70	7.14	8.33	16.67	1.02	0.00	-1.02	0.514473	1.000000
K	cassette	FDPS	chr1	+	chr1:155278757-155282045	chr1:155278757-155279833;chr1:155279997-155282045		chr1:155279834-155279996			85.71	100.00	91.23	NA	90.00	NA	95.60	100.00	95.35	98.18	94.37	100.00	96.33	100.00	100.00	97.83	95.38	100.00	100.00	89.47	100.00	100.00	96.97	100.00	NA	75.00	87.27	100.00	94.29	100.00	83.33	87.18	100.00	93.33	97.67	91.43	100.00	87.59	-12.41	0.064589	0.621473
K	cassette	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481235-7481659	chr17:7481235-7481482;chr17:7481563-7481659		chr17:7481483-7481562			95.96	95.91	95.52	97.74	97.12	97.69	99.86	99.78	100.00	99.88	99.73	100.00	100.00	99.63	99.52	99.58	99.74	99.73	95.66	94.31	97.09	97.80	96.84	98.18	97.64	98.33	97.91	99.10	98.97	99.24	87.92	88.83	90.63	97.13	96.64	98.08	96.78	97.14	0.37	0.792269	0.936947
N	alternative_acceptor	ANAPC4	chr4	+	chr4:25416323-25417087	chr4:25416323-25417021		chr4:25417022-25417087	chr4:25417087-25417088		8.33	0.00	8.57	NA	4.76	NA	0.00	10.00	NA	NA	0.00	NA	6.67	0.00	0.00	0.00	5.00	NA	0.00	13.64	NA	16.67	12.50	7.69	0.00	18.18	7.89	10.00	12.50	7.69	6.25	7.69	5.26	9.09	5.13	6.45	0.00	9.16	9.16	0.033863	0.560254
K	intron_retention	CDK2AP2	chr11	-	chr11:67274969-67275062				chr11:67274968-67274969;chr11:67275062-67275063		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	4.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	VPS11	chr11	+	chr11:118949415-118949504				chr11:118949414-118949415;chr11:118949504-118949505		1.96	6.90	8.11	NA	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.88	0.00	0.00	5.00	0.00	NA	0.00	4.29	NA	6.06	4.76	0.00	1.45	0.00	0.00	2.22	5.26	0.00	0.00	0.00	0.703837	1.000000
K	intron_retention	MED10	chr5	-	chr5:6374540-6377278				chr5:6374539-6374540;chr5:6377278-6377279		5.41	0.00	4.65	0.00	3.92	0.00	0.00	0.00	0.00	1.92	0.00	0.00	3.33	0.00	1.75	0.00	0.00	0.00	0.00	6.25	4.35	2.17	1.75	2.13	NA	2.86	2.22	0.00	0.00	2.17	2.94	6.12	NA	2.50	4.76	3.92	0.00	2.90	2.90	0.647396	1.000000
N	alternative_acceptor	HDAC10,MAPK12	chr22	-	chr22:50684522-50684726	chr22:50684602-50684726		chr22:50684522-50684601	chr22:50684521-50684522		0.00	4.76	4.55	0.00	2.44	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	8.33	0.00	0.00	NA	3.33	0.00	2.44	0.00	0.00	0.00	3.03	6.67	4.17	0.00	3.33	0.00	0.00	3.12	5.36	NA	0.00	0.00	3.18	0.00	-3.18	0.597526	0.846578
K	coord_cassette	TBRG4	chr7	-	chr7:45143043-45145039	chr7:45143043-45143697;chr7:45143856-45144136;chr7:45144309-45145039		chr7:45143698-45143855;chr7:45144137-45144308			NA	45.83	57.14	NA	41.67	NA	96.15	92.86	93.10	83.87	83.33	NA	92.86	92.86	95.12	92.50	92.59	100.00	50.00	60.00	65.00	56.52	32.26	78.95	NA	NA	45.83	75.00	50.00	84.21	60.00	61.90	41.18	65.00	47.83	89.29	50.00	76.43	26.43	0.488231	0.708155
N	alternative_acceptor	NFKBID	chr19	-	chr19:36379596-36380791;chr19:36380607-36380791	chr19:36379515-36380791		chr19:36379515-36379595;chr19:36379596-36380606	chr19:36379514-36379515;chr19:36379595-36379596		93.10	97.50	94.23	100.00	98.77	NA	NA	NA	NA	100.00	91.67	NA	NA	NA	90.00	NA	90.91	100.00	95.65	93.88	100.00	97.14	96.89	94.12	100.00	87.50	97.14	95.83	96.30	NA	95.56	96.72	98.08	96.34	94.95	97.67	97.79	93.49	-4.30	0.048120	0.570243
N	jcn_only_AD	FGD2	chr6	+	chr6:36990147-36993567;chr6:36992570-36993567	chr6:36993106-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		2.96	0.00	NA	NA	0.00	NA	0.00	1.09	0.00	0.00	0.00	7.69	0.00	1.33	0.00	0.00	0.00	0.00	NA	3.06	NA	NA	0.00	0.00	0.00	3.55	NA	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	1.71	0.00	2.16	2.16	0.003981	0.177805
K	intron_retention	MUS81	chr11	+	chr11:65632795-65633281				chr11:65632794-65632795;chr11:65633281-65633282		7.89	7.32	5.41	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	3.57	2.78	13.33	9.09	0.00	0.00	6.67	2.56	0.00	5.41	0.00	8.70	5.88	5.56	0.00	5.56	8.82	1.43	5.12	3.69	0.871007	1.000000
N	coord_cassette	EIF3H	chr8	-	chr8:117658843-117767904	chr8:117658843-117661044;chr8:117661166-117668094;chr8:117668245-117767904		chr8:117661045-117661165;chr8:117668095-117668244			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	jcn_only_AD	PSMA1,TIMM10	chr11	-	chr11:57297708-57298130;chr11:57297708-57298195;chr11:57297708-57298199	chr11:57297708-57297817		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	14.29	1.28	3.03	0.00	0.00	22.22	0.00	0.00	0.00	0.00	0.00	41.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	11.11	0.209868	0.657607
K	intron_retention	WRNIP1	chr6	+	chr6:2783796-2784557				chr6:2783795-2783796;chr6:2784557-2784558		3.33	0.00	12.82	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	9.09	0.00	NA	0.00	7.69	0.00	3.70	NA	5.00	2.70	9.09	6.25	0.00	0.00	0.00	0.00	0.00	0.741886	1.000000
N	cassette	FBRS	chr16	+	chr16:30677028-30678239	chr16:30677028-30677832;chr16:30677863-30678239		chr16:30677833-30677862			89.47	75.00	89.53	NA	66.67	NA	100.00	100.00	95.38	98.00	94.12	100.00	100.00	97.62	96.25	97.06	100.00	100.00	NA	92.73	78.57	75.00	78.95	80.77	81.82	94.34	83.10	100.00	80.00	92.86	89.29	83.33	NA	83.02	84.48	91.53	90.91	93.53	2.62	0.522618	0.798719
K	intron_retention		chr14	-	chr14:74754963-74755418				chr14:74754962-74754963;chr14:74755418-74755419		14.29	13.64	17.50	NA	16.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	12.50	18.75	13.33	NA	15.00	10.00	16.67	14.71	19.35	NA	17.86	0.00	20.00	20.59	3.70	4.35	19.05	9.09	8.10	14.50	6.40	0.909505	1.000000
N	jcn_only_AA	B4GALT3	chr1	-	chr1:161141855-161142016	chr1:161141880-161142016		chr1:161141855-161141879	chr1:161141854-161141855		96.88	90.24	88.46	100.00	87.50	100.00	100.00	100.00	100.00	91.30	100.00	NA	100.00	100.00	94.12	100.00	100.00	NA	100.00	96.00	100.00	100.00	93.94	NA	100.00	91.30	92.73	92.31	92.00	100.00	92.00	89.83	95.65	88.46	100.00	95.65	100.00	96.44	-3.56	0.488496	0.746992
N	alternative_donor	PPIF	chr10	+	chr10:81109510-81111242	chr10:81110281-81111242		chr10:81109510-81110280	chr10:81109509-81109510		13.74	12.12	16.37	1.72	2.83	0.00	1.11	2.90	1.88	1.45	1.96	1.10	2.59	2.34	3.70	1.87	1.70	2.78	10.00	19.19	4.46	11.40	10.82	14.81	40.00	12.36	11.15	4.58	7.24	2.95	12.44	12.87	9.76	10.82	9.47	10.42	9.88	12.40	2.52	0.750831	0.899031
N	alternative_acceptor		chr11	-	chr11:47397281-47401295	chr11:47397284-47401295		chr11:47397281-47397283	chr11:47397280-47397281		68.42	26.19	65.62	NA	53.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	40.00	76.92	66.67	NA	55.88	NA	56.25	61.54	68.42	75.00	41.67	NA	78.57	80.95	26.92	64.29	50.00	60.00	33.46	72.67	39.21	0.009587	0.466251
K	jcn_only_AA	LSM14A,NDUFS7	chr19	+	chr19:1393330-1395389	chr19:1393330-1394416		chr19:1394417-1395389	chr19:1395389-1395390		2.22	0.00	5.56	0.00	1.78	0.00	2.80	0.00	4.55	2.22	3.39	0.00	0.00	8.33	0.00	3.08	0.00	0.00	0.00	6.25	0.00	2.50	1.63	0.00	0.00	4.76	2.70	0.00	0.98	0.00	3.85	6.90	0.86	4.88	0.00	2.35	0.00	4.30	4.30	0.028177	0.637417
K	alternative_last_exon	ACADM,TIPRL	chr1	+	chr1:168160739-168161414;chr1:168160739-168165784	chr1:168160739-168161445	chr1:168165785-168165880	chr1:168161446-168161633			0.00	4.55	2.78	13.64	8.00	46.43	0.00	0.00	0.00	1.72	2.04	1.89	0.00	2.94	0.00	2.94	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.94	3.03	0.00	0.00	2.27	0.00	2.90	0.00	0.00	0.00	0.940804	0.972164
N	alternative_acceptor	IFI35	chr17	+	chr17:41164295-41165076;chr17:41164295-41164958;chr17:41164295-41165063	chr17:41164295-41164946		chr17:41164947-41164958;chr17:41164959-41165063;chr17:41165064-41165076	chr17:41164958-41164959;chr17:41165063-41165064;chr17:41165076-41165077		2.68	3.12	5.13	0.00	0.00	1.59	0.00	0.62	1.72	0.00	0.00	1.02	0.00	1.28	0.26	1.12	0.00	0.43	4.35	3.03	2.27	5.00	0.00	3.70	0.00	4.06	4.08	4.90	0.00	2.17	3.50	3.36	0.00	7.69	0.00	4.23	0.00	2.85	2.85	0.218540	0.671511
N	cassette	AC002398.9,LIN37	chr19	+	chr19:36243735-36244917	chr19:36243735-36243987;chr19:36244155-36244917		chr19:36243988-36244154			94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MYO1F	chr19	-	chr19:8619456-8619537				chr19:8619455-8619456;chr19:8619537-8619538		2.92	4.23	3.02	NA	6.25	NA	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	1.41	0.00	0.44	0.00	18.18	3.06	0.00	0.00	2.47	0.00	14.63	0.93	2.78	4.35	3.23	NA	3.23	4.61	6.25	2.13	6.32	1.82	5.24	1.93	-3.32	0.606729	1.000000
N	alternative_donor	CDC26	chr9	-	chr9:116035719-116037657;chr9:116035719-116037661;chr9:116035719-116037509	chr9:116035719-116036839		chr9:116036840-116037509;chr9:116037510-116037657;chr9:116037658-116037661	chr9:116037509-116037510;chr9:116037657-116037658;chr9:116037661-116037662		4.17	0.00	6.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	3.70	0.00	0.00	0.00	2.56	0.00	4.35	2.94	5.88	0.00	2.33	4.88	2.86	2.70	0.00	2.94	7.14	0.00	4.76	5.26	6.25	0.00	2.45	2.45	0.032779	0.347104
K	alternative_acceptor	PCK2	chr14	+	chr14:24572465-24573050	chr14:24572465-24572718		chr14:24572719-24573050	chr14:24573050-24573051		90.32	92.48	90.48	90.91	86.76	88.89	89.32	93.01	90.68	90.48	92.65	93.48	95.36	93.10	93.02	91.43	92.00	93.94	87.23	87.58	90.45	94.74	92.42	100.00	86.99	89.45	95.38	96.00	86.75	92.00	89.15	87.69	85.86	88.57	92.31	89.13	88.28	89.88	1.61	0.623640	0.854752
N	intron_retention	CCDC107	chr9	+	chr9:35660645-35660767				chr9:35660644-35660645;chr9:35660767-35660768		100.00	98.46	87.50	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	93.33	NA	97.06	100.00	95.83	NA	97.22	NA	100.00	100.00	95.00	100.00	100.00	NA	100.00	100.00	94.20	100.00	100.00	NA	98.46	100.00	1.54	0.258813	1.000000
K	intron_retention		chr16	-	chr16:1496719-1497006				chr16:1496718-1496719;chr16:1497006-1497007		5.32	3.20	3.88	5.13	4.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	5.00	5.36	2.68	6.00	3.12	2.44	1.15	5.08	1.75	0.00	2.73	0.00	12.99	8.49	8.97	3.41	3.41	4.00	2.17	5.20	3.03	0.817406	1.000000
N	jcn_only_AD	RBCK1	chr20	+	chr20:401651-402770;chr20:401798-402770	chr20:401676-402770		chr20:401651-401675;chr20:401676-401797	chr20:401650-401651;chr20:401675-401676		100.00	100.00	94.74	NA	NA	NA	100.00	100.00	98.39	100.00	100.00	96.67	100.00	96.67	94.59	100.00	100.00	100.00	NA	92.86	100.00	NA	100.00	91.67	100.00	96.00	100.00	90.00	90.00	95.12	93.88	94.12	100.00	100.00	94.12	94.44	100.00	96.34	-3.66	0.037719	0.464350
K	intron_retention	DNAJC5	chr20	+	chr20:62562376-62562817				chr20:62562375-62562376;chr20:62562817-62562818		3.23	2.13	2.97	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.70	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	3.85	1.45	2.63	NA	1.45	0.00	4.17	0.00	7.14	6.78	1.67	5.88	1.92	3.30	2.99	1.80	1.39	-0.41	0.845654	1.000000
N	alternative_acceptor	CECR1	chr22	-	chr22:17684664-17687960	chr22:17684780-17687960		chr22:17684664-17684779	chr22:17684663-17684664		2.00	5.88	0.00	NA	NA	NA	0.71	1.00	0.00	0.00	0.22	0.25	1.55	3.28	0.00	0.41	0.93	0.00	NA	2.22	NA	0.00	1.14	0.00	0.00	2.06	0.00	2.00	2.86	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.13	2.03	0.90	0.854282	0.947480
K	intron_retention	TMEM30A	chr6	.	chr6:75966012-75968495				chr6:75966011-75966012;chr6:75968495-75968496		5.32	0.00	3.88	NA	NA	NA	0.47	1.45	0.46	0.00	0.00	0.00	0.45	0.49	0.00	0.93	0.00	1.02	NA	5.13	4.55	2.86	3.33	1.89	NA	2.22	2.04	0.00	0.00	0.00	7.69	5.70	15.38	5.06	1.02	3.37	0.46	3.67	3.21	0.686896	1.000000
K	jcn_only_AA	RABGGTA	chr14	-	chr14:24734962-24735635	chr14:24734970-24735635		chr14:24734962-24734969	chr14:24734961-24734962		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	90.91	100.00	100.00	100.00	98.28	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	CCDC53	chr12	-	chr12:102433781-102437882;chr12:102433757-102437882	chr12:102433754-102437882		chr12:102433754-102433756;chr12:102433757-102433780	chr12:102433753-102433754;chr12:102433756-102433757		26.19	18.00	20.99	11.11	25.64	21.43	18.57	13.46	10.91	11.11	15.38	11.43	14.29	19.61	22.22	16.13	16.67	13.79	13.33	20.41	17.39	21.74	21.28	12.50	20.00	22.00	11.54	15.38	17.31	12.50	15.15	22.81	25.93	13.51	23.81	15.79	18.29	20.01	1.72	0.681404	0.857722
N	alternative_acceptor		chr17	.	chr17:40717824-40717923	chr17:40717824-40717907		chr17:40717908-40717923	chr17:40717923-40717924		1.89	2.50	2.50	5.00	1.37	3.76	2.22	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	2.56	1.96	5.00	2.22	3.03	1.72	2.63	1.67	5.13	0.00	4.26	4.00	5.17	4.24	0.00	5.00	1.37	2.03	2.23	0.20	0.786378	0.919016
K	jcn_only_AD	SH3GL1	chr19	-	chr19:4366992-4400320	chr19:4366992-4390048		chr19:4390049-4400320	chr19:4400320-4400321		0.00	0.00	0.00	NA	0.00	NA	2.00	0.00	0.00	0.00	3.57	9.09	0.00	0.00	4.00	0.00	0.94	0.00	NA	0.00	8.33	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.57	7.69	0.00	0.00	0.00	0.00	0.391002	0.657607
N	jcn_only_AD	RPS6KB2	chr11	+	chr11:67200309-67200422	chr11:67200317-67200422		chr11:67200309-67200316	chr11:67200308-67200309		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	AGAP3	chr7	+	chr7:150839341-150840427	chr7:150839341-150839498;chr7:150839722-150840427		chr7:150839499-150839721			97.83	94.34	97.93	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	96.12	100.00	97.88	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.97	91.00	98.13	96.48	95.71	98.00	100.00	2.00	0.136679	0.709176
K	intron_retention		chr4	+	chr4:109543181-109543260				chr4:109543180-109543181;chr4:109543260-109543261		2.21	0.40	0.50	0.00	0.00	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	3.05	0.71	0.49	0.18	0.48	0.00	0.00	0.00	0.15	0.00	0.00	5.50	2.84	1.18	0.31	0.14	0.00	0.20	1.10	0.91	0.340611	1.000000
N	alternative_donor	TMEM176A	chr7	+	chr7:150498310-150498623;chr7:150498057-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497917-150498623;chr7:150497246-150498623	chr7:150498162-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		0.00	NA	0.00	NA	NA	NA	6.25	1.75	2.56	4.55	6.67	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	2.56	0.00	0.00	1.16	0.00	0.00	2.70	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.544126	0.780071
K	coord_cassette	SAFB	chr19	+	chr19:5626501-5645347	chr19:5626501-5641604;chr19:5641670-5641750;chr19:5641958-5645347		chr19:5641605-5641669;chr19:5641751-5641957			100.00	100.00	98.51	NA	NA	NA	100.00	100.00	100.00	100.00	98.59	100.00	98.08	100.00	100.00	100.00	98.63	100.00	NA	96.97	100.00	100.00	100.00	95.24	81.82	100.00	100.00	94.29	100.00	100.00	93.10	95.45	NA	97.83	98.08	97.01	99.04	100.00	0.96	0.507218	0.715788
N	jcn_only_AD		chr16	-	chr16:28117819-28118882	chr16:28117819-28118842		chr16:28118843-28118882	chr16:28118882-28118883		100.00	100.00	100.00	NA	100.00	NA	100.00	97.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.37	97.30	100.00	100.00	100.00	100.00	95.71	100.00	100.00	0.00	0.178679	0.657607
N	alternative_acceptor	ATRIP,TREX1	chr3	+	chr3:48507709-48508176;chr3:48507709-48508138;chr3:48507709-48508028;chr3:48507709-48508382	chr3:48507709-48508463		chr3:48508029-48508138;chr3:48508139-48508176;chr3:48508177-48508382;chr3:48508383-48508463	chr3:48508138-48508139;chr3:48508176-48508177;chr3:48508382-48508383;chr3:48508463-48508464		4.84	14.71	0.00	0.00	14.29	12.00	6.25	2.63	4.76	0.00	5.00	12.00	14.29	6.31	5.00	8.33	10.00	17.24	0.00	6.45	0.00	0.00	7.41	4.44	0.00	2.22	NA	11.11	15.00	6.56	0.00	0.00	0.00	0.00	0.00	6.94	3.12	3.73	0.61	0.513814	0.800638
N	jcn_only_AA	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668273;chr17:79668162-79668567;chr17:79668162-79668244	chr17:79668162-79668537		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		88.24	87.29	88.10	85.58	88.28	88.10	92.00	90.00	92.42	85.37	86.90	83.72	88.24	92.42	88.61	87.50	88.64	88.00	90.28	92.05	91.73	90.00	87.05	87.00	91.04	86.36	88.80	88.35	89.66	86.99	93.23	91.30	89.62	86.61	90.57	88.89	89.95	91.03	1.08	0.637677	0.838192
N	jcn_only_AA	RASSF4	chr10	+	chr10:45467297-45477945;chr10:45467297-45477972;chr10:45467297-45472749;chr10:45467297-45471759	chr10:45467297-45477968		chr10:45471760-45472749;chr10:45472750-45477945;chr10:45477946-45477968;chr10:45477969-45477972	chr10:45472749-45472750;chr10:45477945-45477946;chr10:45477968-45477969;chr10:45477972-45477973		95.17	100.00	95.19	NA	NA	NA	95.59	94.58	93.27	92.07	94.74	99.12	97.62	95.45	93.46	92.37	90.80	94.67	NA	94.12	92.68	100.00	94.29	92.98	NA	95.32	93.73	95.65	96.77	96.15	96.43	95.29	100.00	94.74	98.41	93.79	98.81	95.25	-3.56	0.055245	0.663989
K	intron_retention	QKI	chr6	+	chr6:163987828-163990469				chr6:163987827-163987828;chr6:163990469-163990470		100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	98.31	100.00	100.00	92.96	100.00	98.85	100.00	100.00	100.00	97.92	100.00	100.00	100.00	100.00	92.81	94.12	100.00	97.59	96.88	94.74	100.00	91.49	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	0.00	0.371952	1.000000
K	intron_retention	RPS9	chr19	+	chr19:54705478-54711265				chr19:54705477-54705478;chr19:54711265-54711266		41.82	28.33	31.48	35.57	25.47	39.83	6.67	NA	12.50	15.62	7.14	13.33	4.17	16.67	6.67	20.59	5.26	10.00	26.96	47.06	31.86	51.92	42.86	54.17	26.49	22.86	24.73	28.36	22.45	33.33	34.48	34.69	22.13	30.00	21.95	45.36	24.31	34.48	10.17	0.600572	1.000000
N	alternative_acceptor		chr8	.	chr8:15978690-16001066;chr8:15998564-16001066;chr8:15998566-16001066;chr8:15998463-16001066	chr8:15998555-16001066		chr8:15978690-15998462;chr8:15998463-15998554;chr8:15998555-15998563;chr8:15998564-15998565	chr8:15978689-15978690;chr8:15998462-15998463;chr8:15998554-15998555;chr8:15998563-15998564		100.00	75.00	NA	NA	88.89	NA	100.00	98.46	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.56	98.31	57.14	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	60.00	100.00	100.00	100.00	75.00	100.00	25.00	0.084489	0.585944
K	alternative_donor	ARL6IP4	chr12	+	chr12:123465814-123466141	chr12:123465847-123466141		chr12:123465814-123465846	chr12:123465813-123465814		46.88	46.27	56.52	36.73	45.90	42.86	39.82	44.00	46.30	36.36	32.28	34.43	44.60	43.48	47.06	40.00	37.19	34.69	47.06	45.83	48.60	47.06	47.31	36.67	43.05	40.00	50.00	34.55	40.69	40.00	55.00	63.16	40.00	44.19	36.67	40.38	43.83	44.91	1.09	0.349659	0.650093
K	cassette	PHF21A	chr11	-	chr11:45958121-45967390	chr11:45958121-45959707;chr11:45959864-45967390		chr11:45959708-45959863			92.86	100.00	88.37	NA	NA	NA	95.45	94.12	86.00	NA	NA	NA	94.74	92.31	85.71	NA	92.31	NA	NA	90.00	89.47	NA	84.62	NA	100.00	92.86	90.79	100.00	NA	93.33	89.29	86.96	NA	80.00	88.24	91.30	97.72	92.59	-5.14	0.019043	0.375693
K	intron_retention	IRF3	chr19	-	chr19:50163091-50163969				chr19:50163090-50163091;chr19:50163969-50163970		5.36	5.26	12.31	4.76	4.27	6.12	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.61	0.00	3.70	0.00	4.88	NA	3.42	3.12	5.71	10.00	1.79	4.35	7.14	6.76	4.71	7.69	13.89	0.00	3.51	1.56	-1.95	0.940760	1.000000
K	jcn_only_AA	ERAL1	chr17	+	chr17:27186302-27187594	chr17:27186302-27187448		chr17:27187449-27187594	chr17:27187594-27187595		100.00	100.00	94.29	100.00	100.00	90.00	96.67	NA	100.00	100.00	100.00	NA	93.94	100.00	94.64	85.71	100.00	100.00	100.00	100.00	94.87	100.00	94.59	100.00	100.00	NA	100.00	100.00	94.59	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.196529	0.663989
N	cassette	TYMP	chr22	-	chr22:50967768-50968332;chr22:50962854-50968332;chr22:50965979-50968332;chr22:50965168-50968332;chr22:50965713-50968332;chr22:50966147-50968332;chr22:50967040-50968332	chr22:50967768-50967924,chr22:50966147-50967924,chr22:50967040-50967924,chr22:50965168-50967924,chr22:50965979-50967924,chr22:50965713-50967924,chr22:50962854-50967924;chr22:50968184-50968332		chr22:50967925-50968183			84.27	43.75	70.96	47.43	41.08	38.45	100.00	98.23	98.66	98.98	97.64	98.42	99.29	95.85	96.24	97.18	96.09	98.28	66.54	90.35	81.75	78.57	67.08	86.29	60.29	94.43	87.54	91.86	82.55	91.32	83.18	85.67	49.70	75.14	79.05	83.81	63.42	92.39	28.97	0.088142	0.652861
K	intron_retention	TIMM17B	chrX	-	chrX:48751294-48751379				chrX:48751293-48751294;chrX:48751379-48751380		8.00	3.08	7.27	5.13	5.33	8.51	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	1.49	0.00	0.00	0.00	8.51	12.50	9.09	11.54	8.00	4.76	0.00	0.00	3.77	0.00	3.64	4.76	14.71	6.25	11.11	0.00	9.09	8.70	2.79	4.00	1.21	0.823781	1.000000
K	intron_retention	NIT1	chr1	+	chr1:161089179-161089298				chr1:161089178-161089179;chr1:161089298-161089299		22.58	11.76	14.89	NA	16.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	2.63	NA	0.00	0.00	NA	17.86	9.09	NA	19.23	23.08	NA	6.25	13.21	14.29	8.70	4.76	13.33	15.15	7.14	6.67	17.39	15.15	3.57	9.79	6.22	0.853528	1.000000
N	jcn_only_AD	DROSHA	chr5	-	chr5:31409440-31410852	chr5:31409440-31409807		chr5:31409808-31410852	chr5:31410852-31410853		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	5.26	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	MT1E	chr16	+	chr16:56659792-56660791	chr16:56659792-56660377		chr16:56660378-56660791	chr16:56660791-56660792		99.02	100.00	98.35	96.05	NA	99.43	98.36	99.44	99.32	92.65	88.46	100.00	99.53	99.53	99.39	98.82	91.30	99.07	100.00	98.68	97.61	100.00	NA	100.00	100.00	98.51	97.87	100.00	NA	100.00	98.73	98.33	100.00	92.00	NA	98.55	100.00	98.88	-1.12	0.069275	0.663989
K	jcn_only_AD	MYL5	chr4	+	chr4:672823-673702	chr4:672963-673702		chr4:672823-672962	chr4:672822-672823		0.00	0.00	1.92	6.67	2.27	3.03	NA	NA	0.00	NA	NA	NA	NA	NA	2.94	NA	NA	NA	2.99	5.26	6.67	0.00	4.55	0.00	0.00	13.33	7.84	NA	0.00	0.00	7.41	8.33	0.00	0.00	9.09	2.86	0.00	6.33	6.33	0.125802	0.657607
K	jcn_only_AA	AP1G2	chr14	-	chr14:24032819-24032924	chr14:24032848-24032924		chr14:24032819-24032847	chr14:24032818-24032819		100.00	88.00	96.88	NA	NA	NA	95.24	100.00	100.00	100.00	100.00	91.67	100.00	95.45	98.08	NA	100.00	100.00	NA	86.67	88.24	NA	87.50	NA	92.31	100.00	96.67	NA	93.33	NA	100.00	92.31	91.67	NA	85.71	86.67	92.31	100.00	7.69	0.260043	0.663989
K	alternative_donor	TOM1	chr22	+	chr22:35718013-35719020	chr22:35718031-35719020		chr22:35718013-35718030	chr22:35718012-35718013		96.15	94.29	97.18	92.00	90.00	NA	100.00	94.12	97.62	93.10	95.65	100.00	89.47	98.44	95.29	87.80	91.53	92.11	NA	94.90	94.74	89.55	90.32	94.19	100.00	96.77	96.75	91.07	93.48	92.54	96.67	92.81	86.67	89.29	91.30	93.79	94.29	96.41	2.12	0.489672	0.745779
N	cassette	ATP5F1	chr1	+	chr1:111992496-111998848;chr1:111992496-111998707	chr1:111992496-111996832;chr1:111996979-111998707,chr1:111996979-111998848		chr1:111996833-111996978			94.92	100.00	94.87	94.12	94.64	NA	98.59	97.83	98.36	98.31	98.39	98.47	98.23	97.50	96.72	98.56	98.78	98.17	100.00	93.88	96.88	94.32	96.05	97.26	NA	100.00	97.10	96.61	99.12	100.00	91.30	97.67	95.24	100.00	97.99	97.58	98.59	96.21	-2.38	0.142441	0.709176
K	jcn_only_AA	SAFB	chr19	+	chr19:5667176-5667363	chr19:5667176-5667357		chr19:5667358-5667363	chr19:5667363-5667364		67.01	58.57	51.30	62.70	65.82	67.91	89.74	68.97	86.00	72.15	80.95	85.71	78.69	87.10	80.70	81.69	70.00	77.78	65.25	63.10	63.27	72.73	60.33	61.82	70.68	66.67	62.18	80.28	76.19	68.29	63.47	61.62	55.47	61.90	65.57	60.42	67.97	66.84	-1.12	0.958034	0.984403
N	cassette	LILRB2	chr19	-	chr19:54780278-54781403;chr19:54780311-54781403	chr19:54780311-54780660,chr19:54780278-54780660;chr19:54780784-54781403		chr19:54780661-54780783			99.57	97.50	100.00	96.77	97.87	96.00	100.00	99.75	100.00	98.36	100.00	100.00	100.00	100.00	100.00	100.00	99.40	100.00	97.53	99.35	98.52	98.04	97.03	100.00	100.00	99.59	99.24	98.89	100.00	99.28	99.28	98.48	94.44	99.21	99.17	99.80	98.77	99.58	0.81	0.200093	0.709176
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7217917-7218277				chr17:7217916-7217917;chr17:7218277-7218278		15.52	7.55	23.29	6.25	8.82	NA	1.85	1.82	0.00	1.89	1.35	0.00	4.23	0.00	3.39	0.00	0.00	1.72	4.35	12.12	8.11	20.00	13.11	20.00	0.00	10.71	9.62	8.33	9.52	12.20	12.50	18.67	5.56	20.00	15.38	20.59	4.29	11.41	7.12	0.343294	1.000000
N	cassette	PILRA	chr7	+	chr7:99972057-99996913;chr7:99972057-99995501	chr7:99972057-99987510;chr7:99987730-99996913,chr7:99987730-99995501		chr7:99987511-99987729			33.71	33.40	34.93	40.91	31.28	41.98	47.79	56.36	48.66	48.90	40.23	44.46	48.79	59.43	49.30	57.89	44.02	53.23	29.95	39.69	44.24	45.32	36.01	46.88	36.12	41.40	40.00	48.89	40.67	51.51	45.82	46.81	33.15	45.10	42.20	42.53	34.76	43.61	8.85	0.165695	0.709176
K	intron_retention		chr19	+	chr19:39965359-39966720				chr19:39965358-39965359;chr19:39966720-39966721		8.18	4.02	8.98	7.32	5.41	9.33	0.00	0.00	0.00	0.00	0.00	0.00	1.61	1.18	2.88	0.00	0.00	0.00	4.92	7.84	5.10	4.21	3.46	9.28	7.78	5.37	5.35	3.45	3.92	5.80	7.41	9.18	4.50	8.77	8.15	12.89	4.26	6.39	2.13	0.753583	1.000000
N	cassette	SZRD1	chr1	+	chr1:16693804-16719725;chr1:16713621-16719722;chr1:16694511-16719725;chr1:16693804-16719722	chr1:16693804-16717869,chr1:16694511-16717869,chr1:16713621-16717869;chr1:16717920-16719722,chr1:16717920-16719725		chr1:16717870-16717919			18.75	13.64	27.14	28.57	39.13	40.00	27.37	31.82	36.03	43.11	39.64	48.02	32.04	33.05	40.15	35.37	37.20	49.47	25.00	28.21	24.32	40.00	37.14	43.37	NA	32.50	29.17	36.17	38.46	31.33	21.13	35.00	16.67	40.00	39.02	34.88	25.00	30.02	5.02	0.308010	0.709176
K	cassette	TEX264	chr3	+	chr3:51705305-51718428	chr3:51705305-51708286;chr3:51708579-51718428		chr3:51708287-51708578			92.00	89.58	92.31	NA	91.30	NA	95.12	100.00	96.61	100.00	96.30	100.00	95.71	95.45	96.08	91.67	92.16	93.75	100.00	100.00	86.36	NA	90.91	100.00	100.00	87.50	96.55	100.00	90.32	100.00	NA	94.12	94.44	100.00	100.00	100.00	95.41	95.45	0.04	0.784581	0.935398
N	jcn_only_AA	GMPPA	chr2	+	chr2:113343692-113343792	chr2:113343692-113343776		chr2:113343777-113343792	chr2:113343792-113343793		82.35	82.54	83.87	86.96	90.91	86.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.81	70.59	92.86	80.00	100.00	NA	91.11	95.00	85.19	100.00	98.08	100.00	78.57	83.33	85.33	94.12	87.50	90.00	88.22	88.67	0.45	0.640943	0.839025
K	jcn_only_AA	FOLR2,TKFC	chr11	+	chr11:71932356-71932576	chr11:71932356-71932513		chr11:71932514-71932576	chr11:71932576-71932577		93.77	94.39	95.38	94.81	94.80	94.34	93.77	91.45	92.76	89.60	88.29	83.80	94.55	95.38	93.83	94.73	88.24	88.53	90.33	93.07	89.83	93.10	93.61	92.39	91.97	94.28	92.89	92.83	93.18	93.87	89.20	93.08	88.91	94.76	94.08	95.14	92.87	93.42	0.55	0.690397	0.864632
N	alternative_donor	MRPL18	chr6	+	chr6:160212143-160218318	chr6:160212159-160218318		chr6:160212143-160212158	chr6:160212142-160212143		100.00	100.00	100.00	NA	100.00	NA	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	BAZ2A	chr12	-	chr12:56993143-56993485				chr12:56993142-56993143;chr12:56993485-56993486		4.69	26.32	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.79	0.00	0.00	6.67	3.03	NA	0.00	1.92	0.00	NA	0.00	0.00	2.27	0.00	4.76	5.00	3.57	0.00	0.00	0.00	0.660901	1.000000
K	intron_retention	PIH1D1	chr19	-	chr19:49949952-49950280				chr19:49949951-49949952;chr19:49950280-49950281		3.39	2.20	6.17	6.00	4.55	3.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.96	7.14	4.44	0.00	5.13	0.00	2.70	0.00	5.26	0.00	0.00	2.86	8.57	6.38	2.65	0.00	2.70	0.00	2.42	1.70	-0.73	0.730823	1.000000
K	jcn_only_AA	UPP1	chr7	+	chr7:48129016-48129105;chr7:48129016-48129846	chr7:48129016-48129784					94.41	100.00	97.04	95.12	96.43	93.33	95.65	94.67	91.30	91.60	95.59	89.47	97.06	97.20	96.23	95.45	95.16	92.73	100.00	97.06	93.48	94.95	92.65	95.15	100.00	100.00	97.67	95.65	93.10	91.23	92.20	95.56	100.00	96.15	92.50	92.39	100.00	95.87	-4.13	0.065615	0.663989
K	intron_retention	TMEM175	chr4	+	chr4:949679-951611				chr4:949678-949679;chr4:951611-951612		8.70	8.62	12.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	NA	3.85	11.11	4.76	NA	0.00	0.00	0.00	0.00	15.38	NA	0.00	7.14	4.76	4.76	0.00	0.00	0.00	5.26	0.00	2.38	2.38	0.831597	1.000000
N	alternative_first_exon	AMICA1	chr11	-	chr11:93212436-93212537,chr11:93212436-93214596;chr11:93212436-93276441	chr11:93212436-93232441	chr11:93276442-93276674	chr11:93232442-93232517			90.57	100.00	90.74	100.00	100.00	89.19	100.00	96.67	100.00	100.00	100.00	92.19	100.00	96.30	94.29	100.00	100.00	83.82	100.00	93.85	94.12	100.00	96.77	100.00	100.00	92.59	92.19	95.83	100.00	92.98	90.70	98.70	100.00	100.00	100.00	92.31	100.00	93.22	-6.78	0.001784	0.018720
N	alternative_acceptor		chr17	+	chr17:76415757-76419272;chr17:76415757-76416294	chr17:76415757-76420141		chr17:76416295-76419272;chr17:76419273-76420141	chr17:76419272-76419273;chr17:76420141-76420142		53.45	64.52	47.11	69.57	70.37	71.43	78.57	75.00	82.19	65.22	75.00	50.00	58.33	75.86	62.38	50.00	NA	38.46	80.00	50.00	68.33	28.00	44.83	28.33	NA	40.00	44.44	45.45	60.00	53.19	70.97	61.76	85.71	22.86	33.33	28.44	78.57	62.21	-16.36	0.152065	0.656268
K	cassette	DDB2	chr11	+	chr11:47256224-47256820	chr11:47256224-47256307;chr11:47256486-47256820		chr11:47256308-47256485			91.67	78.57	83.78	NA	94.44	NA	92.00	85.71	100.00	100.00	100.00	NA	95.12	95.65	90.91	90.00	93.33	100.00	72.22	50.00	78.95	100.00	80.00	100.00	100.00	90.91	83.33	NA	80.00	78.57	89.47	79.55	72.73	94.12	91.67	85.19	85.28	90.19	4.91	0.890249	0.966777
N	jcn_only_AA	IGBP1	chrX	+	chrX:69370173-69385682	chrX:69370173-69382195		chrX:69382196-69385682	chrX:69385682-69385683		0.00	0.00	0.00	0.00	1.71	0.00	2.67	0.00	0.00	0.00	0.00	0.00	4.48	0.00	2.13	2.63	0.00	2.63	0.00	0.00	0.00	5.71	4.17	0.00	0.00	0.00	2.13	0.00	5.49	0.00	0.00	2.06	1.79	2.13	3.57	3.64	0.90	0.00	-0.90	0.105310	0.663989
N	jcn_only_AA	PCBP2	chr12	+	chr12:53861628-53862560;chr12:53861628-53861966	chr12:53861628-53862563		chr12:53861967-53862560;chr12:53862561-53862563	chr12:53862560-53862561;chr12:53862563-53862564		13.68	21.40	18.60	18.45	14.15	8.57	20.26	19.08	22.39	18.69	17.83	19.80	22.22	22.14	20.27	20.59	18.48	20.83	15.60	18.56	26.02	18.42	17.86	14.51	30.26	14.29	13.01	16.00	18.03	14.86	13.58	16.35	16.15	13.62	17.68	15.36	20.83	16.42	-4.41	0.151750	0.663989
K	coord_cassette	ITPA	chr20	+	chr20:3190264-3194630	chr20:3190264-3193814;chr20:3193873-3193964;chr20:3194030-3194630		chr20:3193815-3193872;chr20:3193965-3194029			NA	92.68	100.00	86.67	88.57	NA	91.18	100.00	95.00	93.18	92.59	93.75	98.48	100.00	100.00	97.22	100.00	97.14	100.00	100.00	84.21	94.29	94.34	95.65	100.00	NA	100.00	90.00	97.87	100.00	100.00	NA	91.89	87.50	82.86	81.58	95.58	100.00	4.42	0.054706	0.643829
K	alternative_acceptor	TSC2	chr16	+	chr16:2136381-2136767	chr16:2136381-2136732		chr16:2136733-2136767	chr16:2136767-2136768		100.00	100.00	96.00	NA	94.12	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	91.67	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	89.19	88.89	100.00	92.86	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	NEK6	chr9	+	chr9:127110102-127113115;chr9:127110102-127111606	chr9:127110102-127138048		chr9:127111607-127113115;chr9:127113116-127138048	chr9:127113115-127113116;chr9:127138048-127138049		0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.317032	0.663989
K	intron_retention	CAMK1	chr3	-	chr3:9804737-9804822				chr3:9804736-9804737;chr3:9804822-9804823		0.00	2.14	5.26	0.00	2.04	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.44	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.39	0.00	4.76	2.08	0.22	0.00	-0.22	0.475287	1.000000
K	intron_retention		chr16	+	chr16:31371387-31371630				chr16:31371386-31371387;chr16:31371630-31371631		6.38	0.00	14.00	NA	NA	NA	0.53	0.00	0.00	1.71	1.67	0.00	0.78	0.00	0.00	0.91	1.23	0.00	NA	15.62	NA	16.67	17.46	6.90	0.00	2.44	8.11	1.85	2.63	0.00	8.33	7.69	NA	13.83	19.30	4.69	0.27	4.41	4.15	0.281656	1.000000
K	jcn_only_AD	DPY30	chr2	-	chr2:32264562-32264801	chr2:32264562-32264661		chr2:32264662-32264801	chr2:32264801-32264802		13.64	3.45	7.32	NA	10.34	NA	6.78	9.09	7.50	16.13	7.32	0.00	10.00	7.69	11.11	5.41	9.38	5.88	10.00	21.88	3.12	8.00	7.81	0.00	NA	NA	9.38	0.00	7.69	16.67	5.88	7.69	6.45	6.90	8.33	5.56	6.78	9.09	2.31	0.222045	0.657607
N	alternative_acceptor	PRPSAP1	chr17	-	chr17:74309098-74309901	chr17:74309424-74309901		chr17:74309098-74309423	chr17:74309097-74309098		15.00	6.67	15.87	0.00	11.11	NA	0.00	0.00	0.00	0.00	0.00	NA	3.12	0.00	5.56	0.00	0.00	NA	18.75	5.56	8.82	5.88	11.54	NA	NA	9.09	11.32	NA	9.09	NA	6.67	11.54	14.29	9.52	13.04	9.52	6.67	6.12	-0.55	0.567459	0.833394
N	jcn_only_AA	RTCB	chr22	-	chr22:32797891-32802648	chr22:32801675-32802648		chr22:32797891-32801674	chr22:32797890-32797891		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	PDE1B	chr12	+	chr12:54969885-54970354				chr12:54969884-54969885;chr12:54970354-54970355		4.62	8.33	3.17	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	0.00	3.23	0.00	NA	0.00	NA	10.00	0.00	2.94	NA	0.00	NA	16.67	8.89	0.00	0.00	0.00	0.00	4.17	1.61	-2.55	0.625170	1.000000
K	jcn_only_AA	HOMER3	chr19	-	chr19:19043855-19049161	chr19:19045220-19049161					100.00	100.00	100.00	100.00	98.23	100.00	100.00	100.00	100.00	100.00	99.38	100.00	98.48	93.75	NA	97.65	98.83	93.94	100.00	96.55	100.00	98.00	98.34	100.00	94.48	100.00	100.00	96.23	100.00	100.00	100.00	100.00	97.79	100.00	98.23	100.00	99.24	100.00	0.76	0.958335	0.984403
N	alternative_acceptor	GPR84	chr12	-	chr12:54757024-54758176;chr12:54757058-54758176;chr12:54756919-54758176;chr12:54757644-54758176;chr12:54757143-54758176	chr12:54757061-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		0.81	12.50	0.60	8.57	5.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.68	1.37	1.85	1.30	0.00	NA	2.13	0.73	2.78	2.08	3.12	5.26	2.04	10.00	1.27	1.32	1.05	5.00	0.75	-4.25	0.299634	0.709013
N	jcn_only_AA	PRKAG2	chr7	-	chr7:151254319-151257609	chr7:151254546-151257609		chr7:151254319-151254545	chr7:151254318-151254319		2.44	0.00	2.00	3.70	7.69	5.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	3.26	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor		chr11	+	chr11:67818132-67818220	chr11:67818132-67818207		chr11:67818208-67818220	chr11:67818220-67818221		96.15	97.97	98.02	98.94	98.98	98.58	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	97.04	98.35	97.94	98.23	100.00	98.24	98.21	98.75	98.46	98.35	100.00	94.98	97.36	97.17	98.01	100.00	98.65	98.10	97.62	-0.48	0.549475	0.824249
K	cassette	RHOC	chr1	-	chr1:113246429-113249699	chr1:113246429-113247721;chr1:113247824-113249699		chr1:113247722-113247823			44.14	35.59	33.65	38.55	30.19	40.91	52.04	61.95	64.58	57.24	50.75	59.46	58.82	69.57	64.71	63.31	46.05	56.67	36.00	43.81	42.67	44.34	30.77	46.67	61.11	41.88	32.26	47.71	43.24	55.95	37.74	35.29	32.14	47.06	40.00	52.87	44.02	43.98	-0.04	0.609963	0.853757
N	alternative_acceptor	PNPLA6	chr19	+	chr19:7622171-7623735	chr19:7622171-7623702		chr19:7623703-7623735	chr19:7623735-7623736		8.89	9.68	11.38	10.53	8.11	13.33	0.00	0.00	0.00	0.00	1.52	0.00	1.04	0.87	0.00	3.33	0.00	0.00	10.23	9.02	11.02	0.00	9.09	0.00	4.12	6.00	6.15	6.25	7.59	0.00	13.16	9.35	12.07	6.90	10.53	3.03	6.90	7.45	0.54	0.964944	0.991031
N	alternative_acceptor	COMMD7	chr20	-	chr20:31291261-31291824	chr20:31291725-31291824		chr20:31291261-31291724	chr20:31291260-31291261		7.46	2.27	6.15	3.85	1.56	0.00	1.64	2.56	0.00	0.00	1.33	0.00	1.39	2.78	2.63	0.00	1.33	0.00	4.76	5.88	8.82	7.50	3.85	5.00	6.25	4.44	6.00	4.76	2.99	2.04	5.88	9.09	5.26	6.06	4.84	4.41	3.51	5.16	1.65	0.310275	0.709013
N	alternative_acceptor	HDAC5	chr17	-	chr17:42157589-42157768	chr17:42157594-42157768		chr17:42157589-42157593	chr17:42157588-42157589		97.96	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	92.11	100.00	100.00	NA	91.01	100.00	96.00	NA	100.00	NA	93.94	100.00	95.00	100.00	96.15	NA	100.00	98.98	-1.02	0.888484	0.961426
K	intron_retention	RP11-468E2.1,RP11-468E2.2,TM9SF1	chr14	-	chr14:24659015-24659585				chr14:24659014-24659015;chr14:24659585-24659586		12.90	11.76	10.20	NA	18.52	NA	10.53	2.22	6.06	13.04	17.86	5.88	7.69	2.63	6.06	11.76	9.52	11.11	33.33	9.68	33.33	16.67	15.38	0.00	NA	7.50	8.00	7.14	14.29	15.79	9.52	18.42	25.00	10.00	12.00	7.69	11.76	8.51	-3.25	0.831014	1.000000
K	alternative_acceptor	VPS28	chr8	-	chr8:145652363-145653871	chr8:145652675-145653871		chr8:145652363-145652674	chr8:145652362-145652363		5.41	8.20	13.51	0.00	2.38	NA	2.27	2.44	7.69	1.49	2.15	1.45	4.35	3.57	7.41	0.00	1.67	0.00	5.56	8.33	8.57	6.25	7.89	10.53	4.00	6.67	6.58	0.00	2.17	2.78	4.76	11.11	2.78	5.88	8.00	5.88	4.17	5.08	0.91	0.598269	0.846631
K	jcn_only_AA	ZNHIT3	chr17	+	chr17:34842811-34848661	chr17:34842811-34848656		chr17:34848657-34848661	chr17:34848661-34848662		100.00	100.00	96.67	NA	94.12	NA	100.00	100.00	95.74	97.62	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.83	100.00	NA	90.91	100.00	100.00	100.00	100.00	100.00	91.89	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	SCAMP2	chr15	-	chr15:75144528-75146361				chr15:75144527-75144528;chr15:75146361-75146362		4.55	8.41	12.66	5.88	1.92	NA	0.49	0.00	0.99	0.00	0.28	0.00	0.00	0.00	0.00	0.00	0.20	0.00	6.67	2.44	0.00	3.23	2.24	3.45	0.00	2.02	4.55	5.56	1.41	0.00	3.45	8.33	6.90	4.76	4.52	3.79	3.58	2.23	-1.35	0.624000	1.000000
N	cassette	DBNL	chr7	+	chr7:44099258-44100375	chr7:44099258-44099646;chr7:44099753-44100375		chr7:44099647-44099752			100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.44	100.00	99.06	100.00	97.98	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	97.73	100.00	100.00	90.70	100.00	100.00	100.00	100.00	0.00	0.259662	0.709176
K	alternative_acceptor	CDV3,DHX30	chr3	+	chr3:133305567-133306002;chr3:133305567-133306739;chr3:133305567-133306005	chr3:133305567-133307196		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		6.45	0.00	8.80	0.00	11.11	0.00	14.86	20.86	17.51	11.25	11.23	16.34	16.20	18.60	15.24	21.58	5.64	12.20	NA	14.06	0.00	11.65	13.08	14.61	0.00	8.45	11.25	17.31	11.94	18.37	11.54	12.50	0.00	7.89	5.15	10.78	0.00	12.80	12.80	0.155763	0.660713
N	cassette	EDEM2	chr20	-	chr20:33714179-33730175;chr20:33722753-33730175;chr20:33719587-33730175	chr20:33714179-33725682,chr20:33722753-33725682,chr20:33719587-33725682;chr20:33725809-33730175		chr20:33725683-33725808			100.00	80.00	96.30	NA	87.50	NA	98.15	100.00	100.00	100.00	90.91	100.00	95.71	98.44	100.00	100.00	94.12	100.00	NA	100.00	95.00	93.75	94.12	100.00	NA	96.43	94.44	100.00	100.00	100.00	100.00	91.84	90.91	100.00	95.12	100.00	93.31	100.00	6.69	0.141572	0.709176
K	jcn_only_AA	CTB-50L17.10	chr19	+	chr19:4496403-4497954	chr19:4496403-4496915		chr19:4496916-4497954	chr19:4497954-4497955		1.67	0.00	1.52	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.561909	0.792395
K	alternative_acceptor	CTC-459F4.3,HMG20B	chr19	+	chr19:3578112-3578699	chr19:3578112-3578506		chr19:3578507-3578699	chr19:3578699-3578700		89.80	98.00	97.37	94.12	94.23	97.73	97.62	100.00	97.44	100.00	96.81	100.00	95.59	95.83	100.00	97.30	100.00	100.00	100.00	100.00	95.42	96.43	96.83	100.00	96.15	100.00	100.00	100.00	100.00	100.00	97.01	96.15	94.87	100.00	92.86	97.56	96.89	98.50	1.62	0.970847	0.993213
K	intron_retention	ACIN1	chr14	-	chr14:23535218-23538684				chr14:23535217-23535218;chr14:23538684-23538685		32.79	36.67	47.73	NA	25.00	NA	6.00	15.91	7.32	1.92	6.06	9.09	7.41	10.26	13.51	10.00	6.94	8.00	NA	35.09	17.65	36.00	38.30	57.14	35.29	35.42	28.57	20.00	21.95	23.81	31.03	30.30	30.00	49.12	37.31	54.55	30.00	31.91	1.91	0.546259	1.000000
K	alternative_first_exon	CBX3	chr7	+	chr7:26241634-26242590,chr7:26242230-26242590,chr7:26242077-26242590,chr7:26241451-26242590;chr7:26241182-26242590	chr7:26241447-26242590	chr7:26240782-26241181	chr7:26241313-26241446			89.06	90.91	86.08	NA	94.12	NA	92.86	89.83	91.89	88.52	87.50	83.33	84.78	87.76	90.16	86.27	89.29	82.22	NA	83.61	94.44	86.36	85.00	73.33	NA	82.69	90.91	86.67	82.14	90.91	85.19	84.51	80.00	80.00	78.95	70.83	87.84	86.47	-1.37	0.817746	0.876860
N	cassette	MFF	chr2	+	chr2:228197305-228220392	chr2:228197305-228205007;chr2:228205097-228220392		chr2:228205008-228205096			95.45	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.48	100.00	100.00	100.00	100.00	92.00	97.17	100.00	96.88	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	0.00	0.194281	0.709176
K	jcn_only_AD	ARHGAP4	chrX	-	chrX:153187263-153192043;chrX:153187263-153191589;chrX:153187263-153192269	chrX:153187263-153193780		chrX:153191590-153192043;chrX:153192044-153192269;chrX:153192270-153193780	chrX:153192043-153192044;chrX:153192269-153192270;chrX:153193780-153193781		5.26	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention	SLC9A1	chr1	-	chr1:27425496-27425702				chr1:27425495-27425496;chr1:27425702-27425703		100.00	100.00	92.11	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	96.55	100.00	96.88	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	0.00	0.370630	1.000000
N	alternative_donor	CLN5	chr13	+	chr13:77574131-77574592;chr13:77570263-77574592	chr13:77572221-77574592		chr13:77570263-77572220;chr13:77572221-77574130	chr13:77570262-77570263;chr13:77572220-77572221		2.50	5.26	1.11	NA	0.00	0.00	0.00	0.00	0.81	0.00	1.45	0.00	0.00	2.33	2.13	0.00	1.56	0.00	0.00	2.17	0.00	0.00	0.00	4.76	NA	2.56	1.69	0.00	0.00	0.00	0.00	1.20	0.00	0.00	3.03	2.38	0.00	2.25	2.25	0.659783	0.847807
K	alternative_donor	AIF1	chr6	+	chr6:31583071-31583297	chr6:31583132-31583297		chr6:31583071-31583131	chr6:31583070-31583071		69.89	75.66	65.23	75.17	75.09	76.70	74.90	75.93	65.12	79.54	74.76	76.86	75.17	75.41	68.22	75.10	70.72	75.57	63.06	66.00	62.61	67.86	66.67	76.53	72.45	73.18	70.80	75.00	71.68	73.43	65.14	60.16	64.08	76.64	72.39	72.30	73.68	71.53	-2.14	0.990182	0.997584
K	alternative_first_exon	TSPAN4	chr11	+	chr11:843046-847200,chr11:845055-847200,chr11:843670-847200;chr11:842916-847200;chr11:843051-847200;chr11:844588-847200	chr11:844187-847200	chr11:842808-842915;chr11:842941-843050;chr11:844446-844587	chr11:844081-844186			100.00	87.95	100.00	87.50	91.07	91.67	82.11	100.00	96.36	78.23	78.33	76.12	77.54	95.65	91.18	75.21	77.78	73.40	83.64	93.33	96.88	88.68	86.31	90.77	93.33	100.00	100.00	94.92	86.47	88.61	86.96	100.00	84.48	91.67	90.91	89.66	84.06	97.83	13.77	0.004523	0.034507
K	intron_retention		chr20	-	chr20:3678781-3679848				chr20:3678780-3678781;chr20:3679848-3679849		27.06	31.25	11.76	NA	NA	NA	2.33	4.17	2.28	2.70	2.04	6.36	7.73	4.44	6.86	15.52	4.55	11.19	NA	25.00	0.00	NA	8.00	37.50	20.00	16.00	8.16	41.67	15.79	37.84	26.67	15.91	NA	55.00	14.29	49.09	13.87	20.50	6.63	0.982624	1.000000
K	intron_retention	TPRA1	chr3	-	chr3:127294894-127295459				chr3:127294893-127294894;chr3:127295459-127295460		5.56	0.00	7.50	4.88	2.08	0.00	2.82	0.00	0.00	0.88	0.00	0.00	1.92	1.15	0.00	1.75	1.16	0.00	0.00	2.33	0.00	5.13	6.48	6.00	0.00	7.14	4.88	3.85	4.55	4.08	6.41	5.88	6.25	4.07	5.43	3.16	0.96	3.94	2.98	0.452355	1.000000
N	cassette	AC018755.18,SIGLEC5	chr19	-	chr19:52130502-52131086	chr19:52130502-52130714;chr19:52131000-52131086		chr19:52130715-52130999			100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	96.55	100.00	100.00	94.74	91.76	NA	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	cassette	AP2A2	chr11	+	chr11:959506-972061;chr11:959506-977094	chr11:959506-970168;chr11:970312-972061,chr11:970312-977094		chr11:970169-970311			100.00	100.00	86.96	NA	100.00	NA	100.00	100.00	100.00	100.00	99.19	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.83	NA	100.00	96.77	100.00	100.00	100.00	88.89	100.00	100.00	NA	NA	85.71	NA	96.15	98.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	CCDC174	chr3	+	chr3:14709026-14709555				chr3:14709025-14709026;chr3:14709555-14709556		3.70	0.00	11.43	6.67	4.55	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	6.67	4.35	11.11	0.00	9.68	0.00	2.50	3.23	4.00	5.26	5.26	0.00	6.67	0.00	12.12	0.00	11.86	0.00	1.25	1.25	0.733231	1.000000
N	alternative_donor	TBC1D2	chr9	-	chr9:100975501-100982432;chr9:100975501-100983114	chr9:100975501-100976364		chr9:100976365-100982432;chr9:100982433-100983114	chr9:100982432-100982433;chr9:100983114-100983115		4.35	4.55	4.44	NA	0.00	NA	1.16	2.44	0.00	2.50	1.01	NA	2.38	6.90	6.67	2.13	2.17	NA	NA	4.55	0.00	5.00	3.33	10.00	6.25	4.08	2.63	4.00	2.20	NA	1.41	2.00	0.00	6.52	5.45	6.25	2.38	4.21	1.83	0.452964	0.712277
K	cassette	TCEB2	chr16	-	chr16:2822104-2826993	chr16:2822104-2825451;chr16:2825558-2826993		chr16:2825452-2825557			92.48	84.80	89.24	90.32	90.48	87.42	96.45	96.19	97.32	95.45	95.22	95.73	96.01	96.26	97.22	98.61	97.38	95.58	90.97	94.18	92.69	91.76	91.58	91.67	86.73	93.20	89.33	92.35	92.86	93.08	88.60	92.93	86.12	92.67	89.76	91.88	88.85	93.69	4.84	0.205352	0.709176
K	intron_retention	HNRNPH3	chr10	+	chr10:70098984-70099196				chr10:70098983-70098984;chr10:70099196-70099197		2.41	8.70	1.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	2.86	3.23	0.00	0.00	0.00	0.00	1.18	1.18	0.971244	1.000000
N	jcn_only_AA	SMCO4	chr11	-	chr11:93212436-93232441;chr11:93212670-93232441;chr11:93214715-93232441	chr11:93212451-93232441		chr11:93212436-93212450;chr11:93212451-93212669;chr11:93212670-93214714	chr11:93212435-93212436;chr11:93212450-93212451;chr11:93212669-93212670		11.84	0.00	7.79	18.75	10.00	20.34	14.89	15.84	13.95	16.88	13.46	21.10	12.90	15.12	21.67	25.45	8.57	18.00	8.33	10.31	16.81	13.73	12.24	15.87	0.00	17.44	13.54	25.58	27.27	32.46	10.00	9.24	0.00	9.09	10.00	12.50	4.17	13.48	9.32	0.048665	0.663989
K	alternative_last_exon	DHX8	chr17	+	chr17:41599595-41603754;chr17:41599595-41613779;chr17:41599595-41603863	chr17:41599595-41600995	chr17:41613780-41613866;chr17:41603864-41604154	chr17:41600996-41603038			71.43	57.53	72.31	64.86	55.17	75.38	77.78	84.62	84.00	78.57	84.62	93.33	81.25	80.00	75.00	75.76	73.33	77.78	58.18	71.05	61.40	73.91	69.77	67.86	61.54	76.32	69.81	69.23	68.57	69.05	77.78	71.83	55.84	74.42	73.91	78.18	59.86	77.05	17.19	0.055634	0.249349
K	cassette	LILRB5	chr19	-	chr19:54759446-54760351	chr19:54759446-54759905;chr19:54760206-54760351		chr19:54759906-54760205			89.29	75.00	NA	NA	70.59	NA	90.67	91.67	NA	90.00	92.00	94.87	92.56	86.67	NA	91.26	89.71	90.62	64.29	87.76	NA	70.00	76.92	77.14	50.00	91.26	78.95	86.67	83.15	86.67	86.21	81.82	66.67	80.43	78.16	82.14	70.84	88.53	17.69	0.066915	0.622875
N	jcn_only_AA	GRN,PRKAR1A	chr17	+	chr17:42429940-42430083;chr17:42429940-42430087	chr17:42429940-42430028		chr17:42430029-42430083;chr17:42430084-42430087	chr17:42430083-42430084;chr17:42430087-42430088		100.00	91.16	100.00	92.98	93.16	91.88	100.00	93.31	100.00	91.52	89.62	90.86	100.00	100.00	93.28	95.02	89.69	100.00	92.84	93.84	93.45	94.22	93.61	94.12	89.81	100.00	93.09	94.70	93.45	94.18	94.53	93.44	92.27	92.84	94.79	93.84	92.56	97.27	4.71	0.285606	0.663989
K	jcn_only_AA	CEP192,DTNA	chr18	+	chr18:13117643-13124630	chr18:13117643-13124485		chr18:13124486-13124630	chr18:13124630-13124631		6.25	0.00	2.86	NA	6.67	NA	NA	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	10.00	0.00	NA	12.50	NA	NA	0.00	5.88	NA	0.00	NA	0.00	0.00	3.03	NA	0.00	0.00	0.00	3.12	3.12	0.277397	0.663989
N	alternative_acceptor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24680816-24680885;chr14:24680799-24680885;chr14:24680788-24680885;chr14:24680719-24680885	chr14:24680713-24680885		chr14:24680713-24680718;chr14:24680719-24680787;chr14:24680788-24680798;chr14:24680799-24680815	chr14:24680712-24680713;chr14:24680718-24680719;chr14:24680787-24680788;chr14:24680798-24680799		0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	0.00	2.11	2.86	2.83	0.00	2.35	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	5.06	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.375840	0.709013
K	intron_retention		chr10	+	chr10:104161917-104162008				chr10:104161916-104161917;chr10:104162008-104162009		10.34	7.69	6.75	4.24	3.70	4.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	1.34	0.58	0.00	0.00	8.70	6.98	4.37	5.44	8.14	6.88	6.90	5.44	7.07	6.71	5.17	3.80	10.00	9.42	11.34	8.00	6.09	4.66	7.29	6.21	-1.08	0.967251	1.000000
N	cassette	IFNGR2	chr21	+	chr21:34775923-34787194;chr21:34775923-34783750	chr21:34775923-34783146;chr21:34783199-34783750,chr21:34783199-34787194		chr21:34783147-34783198			1.43	0.00	2.30	6.25	5.41	NA	3.61	1.89	1.35	6.46	4.21	4.33	2.53	3.50	2.94	5.53	3.48	4.68	0.00	1.70	2.63	4.94	5.96	5.23	0.00	2.18	2.20	4.55	8.05	5.95	3.45	2.99	NA	5.94	4.11	3.75	0.00	2.04	2.04	0.235596	0.709176
K	intron_retention	RENBP	chrX	-	chrX:153209608-153209760				chrX:153209607-153209608;chrX:153209760-153209761		9.30	1.98	10.34	0.00	6.49	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.65	0.00	3.33	3.77	0.00	0.00	7.89	0.00	8.70	1.85	9.09	0.00	3.88	0.00	11.76	10.00	4.44	3.70	5.26	1.64	2.66	2.81	0.15	0.761118	1.000000
K	intron_retention	ABCF3	chr3	+	chr3:183911241-183911327				chr3:183911240-183911241;chr3:183911327-183911328		5.41	2.14	2.30	4.69	0.95	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	2.00	3.67	4.44	2.33	6.52	0.00	0.00	1.11	0.00	0.00	0.00	10.64	6.67	6.25	1.30	2.53	2.22	0.94	1.00	0.06	0.918576	1.000000
K	jcn_only_AA	TMEM256-PLSCR3	chr17	-	chr17:7294013-7296109	chr17:7294115-7296109		chr17:7294013-7294114	chr17:7294012-7294013		100.00	85.71	87.50	NA	100.00	NA	96.77	95.65	100.00	100.00	100.00	NA	100.00	96.77	100.00	91.67	95.45	NA	NA	86.67	100.00	NA	95.45	NA	100.00	96.55	96.43	NA	93.33	NA	NA	86.67	NA	NA	100.00	NA	98.38	96.55	-1.83	0.907975	0.968555
K	intron_retention	C11orf31,RP11-691N7.6	chr11	+	chr11:57509720-57510334				chr11:57509719-57509720;chr11:57510334-57510335		9.43	6.40	14.47	9.23	7.60	5.36	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	1.89	0.00	0.98	0.00	5.68	11.63	6.94	8.97	8.43	15.22	5.17	11.76	10.87	3.96	4.90	4.27	16.36	13.56	4.15	7.22	7.35	6.25	4.66	10.53	5.87	0.599590	1.000000
N	jcn_only_AA	DNAJC1	chr10	-	chr10:22055239-22094908	chr10:22092914-22094908		chr10:22055239-22092913	chr10:22055238-22055239		0.00	0.00	0.00	0.00	1.82	11.43	0.00	2.27	0.00	2.27	0.00	0.00	0.00	0.00	2.00	6.67	1.89	0.00	2.56	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	5.08	1.90	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.671610	0.854354
K	cassette	GNAS	chr20	+	chr20:57464409-57470666	chr20:57464409-57464580;chr20:57464605-57470666		chr20:57464581-57464604			4.55	0.00	8.33	10.00	7.14	NA	2.27	0.00	0.00	2.44	1.92	3.12	5.56	NA	NA	10.00	5.26	11.76	0.00	5.00	NA	6.67	6.02	6.82	NA	0.00	NA	11.76	6.90	0.00	0.00	NA	NA	6.06	13.33	8.00	1.14	0.00	-1.14	0.979284	0.995133
K	cassette	TMBIM4	chr12	-	chr12:66531947-66539620	chr12:66531947-66532503;chr12:66532515-66539620		chr12:66532504-66532514			100.00	100.00	97.30	100.00	100.00	100.00	100.00	96.36	95.35	100.00	98.61	100.00	100.00	96.97	97.37	100.00	96.49	100.00	92.86	100.00	100.00	100.00	95.12	100.00	100.00	100.00	96.08	95.24	98.08	100.00	95.00	95.74	96.30	100.00	97.50	96.15	100.00	98.48	-1.52	0.929688	0.982136
K	intron_retention		chr2	+	chr2:85823773-85823944				chr2:85823772-85823773;chr2:85823944-85823945		3.18	3.18	4.59	2.59	2.58	2.56	0.56	0.00	1.54	0.00	0.64	0.00	0.53	0.00	1.55	0.00	0.69	1.45	2.32	4.10	1.55	11.11	3.42	8.51	2.53	3.82	4.03	3.85	3.68	3.97	4.68	4.25	2.49	5.75	3.25	4.96	2.41	3.50	1.09	0.815057	1.000000
K	jcn_only_AA	SPARC	chr5	-	chr5:151046071-151047027	chr5:151046086-151047027		chr5:151046071-151046085	chr5:151046070-151046071		0.00	0.00	0.00	NA	0.00	NA	0.89	0.00	0.00	0.00	0.66	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	CDPF1,CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007641;chr22:51007511-51007604;chr22:51007511-51007764	chr22:51007511-51007595		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		12.90	2.13	10.00	14.29	7.14	10.00	NA	NA	NA	NA	NA	NA	NA	NA	20.00	NA	NA	NA	10.00	4.76	4.17	NA	10.00	NA	7.41	4.76	2.94	NA	NA	NA	3.23	6.90	0.00	NA	NA	NA	4.77	4.76	-0.01	0.648462	0.841932
N	coord_cassette	TTC7A	chr2	+	chr2:47238575-47256362	chr2:47238575-47249000;chr2:47249119-47250546;chr2:47250605-47251425;chr2:47251499-47256362		chr2:47249001-47249118;chr2:47250547-47250604;chr2:47251426-47251498			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	86.67	NA	NA	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.643829
K	cassette	SLC1A3	chr5	+	chr5:36680692-36686166	chr5:36680692-36683965;chr5:36684101-36686166		chr5:36683966-36684100			100.00	100.00	94.62	100.00	NA	98.91	100.00	97.73	97.12	95.69	96.30	98.44	100.00	100.00	100.00	96.40	95.12	97.62	100.00	96.97	100.00	93.55	100.00	98.65	NA	98.18	100.00	97.50	NA	97.06	100.00	94.74	100.00	93.94	94.74	96.71	100.00	99.09	-0.91	0.084972	0.641134
N	cassette	SCFD1	chr14	+	chr14:31169465-31175028	chr14:31169465-31171501;chr14:31171582-31175028		chr14:31171502-31171581			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.00	100.00	100.00	100.00	100.00	90.48	92.86	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.199610	0.709176
N	jcn_only_AA	NABP1	chr2	+	chr2:192549023-192549602;chr2:192549023-192550156;chr2:192549023-192549598	chr2:192549023-192550324		chr2:192549599-192549602;chr2:192549603-192550156;chr2:192550157-192550324	chr2:192549602-192549603;chr2:192550156-192550157;chr2:192550324-192550325		97.20	100.00	96.12	98.18	100.00	98.75	100.00	97.42	97.97	98.72	100.00	97.54	97.83	97.69	97.46	99.03	100.00	99.22	100.00	95.35	98.54	98.23	98.61	96.72	NA	92.96	98.38	97.81	100.00	98.92	93.18	91.60	100.00	96.99	96.08	94.20	100.00	96.28	-3.72	0.004794	0.450187
N	alternative_acceptor	SLC31A2	chr9	+	chr9:115923979-115925028;chr9:115923979-115925614	chr9:115923979-115925310		chr9:115925029-115925310;chr9:115925311-115925614	chr9:115925310-115925311;chr9:115925614-115925615		3.48	6.00	2.36	7.69	1.28	16.67	0.00	0.78	1.00	0.00	2.56	0.97	0.00	0.00	0.57	0.00	0.00	0.00	9.09	0.99	2.15	1.15	0.76	0.00	13.33	1.05	2.23	0.00	1.28	0.64	1.83	1.74	4.00	0.00	1.75	1.12	5.00	1.02	-3.98	0.118684	0.606219
K	jcn_only_AA	IFFO1	chr12	-	chr12:6657324-6657590	chr12:6657327-6657590		chr12:6657324-6657326	chr12:6657323-6657324		53.85	57.41	72.00	NA	66.67	NA	74.51	62.07	86.36	70.00	81.82	NA	72.29	64.86	61.90	82.14	78.79	NA	61.29	68.75	70.00	70.00	73.42	58.33	62.50	76.92	67.50	74.07	76.70	81.82	64.71	64.52	63.41	64.29	70.37	61.90	62.95	64.78	1.83	0.992157	0.997956
N	jcn_only_AA	SRSF6	chr20	+	chr20:42089239-42089348;chr20:42089239-42089342	chr20:42089239-42091983		chr20:42089343-42089348;chr20:42089349-42091983	chr20:42089348-42089349;chr20:42091983-42091984		1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	1.46	1.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	1.32	0.00	0.00	1.12	3.64	3.53	12.82	1.42	0.00	1.47	0.00	0.00	0.00	0.595445	0.812401
N	cassette	FGD3	chr9	+	chr9:95780498-95782598	chr9:95780498-95782112;chr9:95782144-95782598		chr9:95782113-95782143			97.67	98.00	95.31	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	100.00	NA	94.87	NA	100.00	100.00	96.55	NA	100.00	NA	94.00	92.31	90.91	100.00	97.06	81.25	100.00	98.84	-1.16	0.844641	0.948671
N	alternative_donor	P3H1	chr1	-	chr1:43220662-43220835	chr1:43220662-43220767		chr1:43220768-43220835	chr1:43220835-43220836		7.14	10.00	7.69	NA	NA	NA	3.70	0.00	3.45	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	NA	NA	7.69	NA	11.76	NA	NA	14.29	4.35	NA	6.67	NA	0.00	10.00	0.00	9.09	5.88	8.33	3.41	0.00	-3.41	0.982418	0.994374
N	alternative_donor	COLGALT1	chr19	+	chr19:17691050-17691507;chr19:17691429-17691507	chr19:17690419-17691507		chr19:17690419-17691049;chr19:17691050-17691428	chr19:17690418-17690419;chr19:17691049-17691050		93.90	91.67	90.85	NA	92.31	NA	98.91	95.74	95.77	94.96	95.28	98.39	97.23	93.15	94.74	94.40	93.23	97.44	94.12	92.86	92.86	83.33	91.18	84.00	89.19	94.29	91.82	89.13	89.47	100.00	92.31	88.24	95.45	92.50	91.74	95.31	94.78	93.53	-1.26	0.657247	0.846001
N	alternative_acceptor		chr17	+	chr17:75208284-75209512	chr17:75208284-75209395		chr17:75209396-75209512	chr17:75209512-75209513		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	intron_retention		chr6	+	chr6:31583514-31584120				chr6:31583513-31583514;chr6:31584120-31584121		11.48	19.26	16.67	1.69	13.83	0.00	10.00	20.00	NA	NA	NA	NA	16.67	NA	NA	NA	0.00	NA	17.95	11.11	18.92	0.00	14.89	0.00	6.04	9.76	13.83	18.18	22.45	8.00	5.88	12.24	9.09	1.79	8.06	0.00	13.34	11.11	-2.23	0.456409	1.000000
N	jcn_only_AD	TMEM176A	chr7	+	chr7:150498310-150498623;chr7:150498057-150498623;chr7:150498162-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497246-150498623	chr7:150497917-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		72.94	NA	67.06	NA	NA	NA	45.22	42.57	40.70	48.28	52.04	47.56	65.82	63.64	55.67	65.82	69.81	71.64	65.09	76.52	49.74	71.03	67.79	68.25	68.60	67.69	61.54	55.19	54.31	54.96	74.57	76.47	83.33	58.06	60.27	66.25	65.82	70.31	4.50	0.931004	0.961184
K	intron_retention	HNRNPH3	chr10	+	chr10:70098445-70098896				chr10:70098444-70098445;chr10:70098896-70098897		11.63	0.00	12.05	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.04	6.90	7.14	2.70	9.23	NA	8.20	8.45	3.64	2.13	1.52	10.13	11.43	0.00	10.29	14.81	12.09	0.00	7.62	7.62	0.083388	1.000000
K	intron_retention	ACD	chr16	-	chr16:67692545-67692622				chr16:67692544-67692545;chr16:67692622-67692623		0.00	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	12.50	5.88	NA	4.55	NA	NA	0.00	4.00	NA	0.00	0.00	0.00	11.54	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.857716	1.000000
N	alternative_donor	ANAPC2	chr9	-	chr9:140070290-140071500;chr9:140070290-140070454;chr9:140070290-140072519	chr9:140070290-140074632		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		78.57	90.48	65.12	94.74	92.11	93.75	95.83	100.00	100.00	100.00	90.00	NA	90.00	100.00	88.00	85.71	86.96	NA	87.50	64.71	93.33	75.00	82.05	66.67	86.00	71.43	75.00	88.89	86.67	87.50	77.27	77.55	91.11	70.00	77.14	70.00	90.24	77.92	-12.32	0.239751	0.610791
N	jcn_only_AA		chr4	+	chr4:141463797-141464623	chr4:141463797-141464606		chr4:141464607-141464623	chr4:141464623-141464624		94.12	100.00	92.31	NA	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	NA	91.67	100.00	NA	100.00	100.00	NA	87.50	100.00	NA	100.00	NA	100.00	97.06	-2.94	0.191013	0.663989
N	alternative_donor	WTAP	chr6	+	chr6:160173336-160174491;chr6:160171043-160174491;chr6:160172747-160174491;chr6:160169967-160174491	chr6:160169402-160174491		chr6:160169402-160169966;chr6:160169967-160171042;chr6:160171043-160172746;chr6:160172747-160173335	chr6:160169401-160169402;chr6:160169966-160169967;chr6:160171042-160171043;chr6:160172746-160172747		22.91	12.86	23.47	9.63	14.29	1.46	40.58	25.23	30.88	29.68	27.05	32.57	57.35	32.28	31.00	34.66	36.15	46.63	5.77	20.23	10.51	24.31	30.53	39.40	NA	26.85	29.65	32.53	32.70	34.74	13.83	14.52	5.33	23.67	23.19	32.48	12.86	24.07	11.21	0.942409	0.984606
K	alternative_last_exon	TMEM14B	chr6	+	chr6:10755466-10756699;chr6:10755466-10770309	chr6:10755466-10759171	chr6:10756700-10757214;chr6:10770310-10770437	chr6:10759172-10760007			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.87	6.06	0.00	5.00	4.62	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.768016	0.856104
K	intron_retention	NFKBIA	chr14	-	chr14:35871741-35871976				chr14:35871740-35871741;chr14:35871976-35871977		93.30	91.11	92.90	91.21	92.56	90.71	88.29	92.30	91.20	92.06	92.83	89.99	90.00	91.15	90.64	92.31	89.73	90.65	87.62	90.06	87.72	91.52	91.50	91.62	100.00	93.15	91.24	89.98	90.85	90.66	90.32	89.50	90.26	92.97	92.82	91.88	90.13	91.72	1.59	0.575342	1.000000
K	cassette	ATG4B	chr2	+	chr2:242590751-242592926;chr2:242591390-242592926	chr2:242590751-242592721,chr2:242591390-242592721;chr2:242592785-242592926		chr2:242592722-242592784			12.50	0.00	11.11	NA	9.09	NA	13.89	7.69	11.76	7.69	9.38	NA	3.12	11.11	8.33	10.34	7.69	NA	NA	10.53	12.50	0.00	0.00	18.18	0.00	25.00	15.62	11.11	12.50	NA	20.00	6.52	5.56	13.04	7.89	7.69	3.12	11.80	8.68	0.025491	0.412736
K	intron_retention		chr11	+	chr11:65482382-65484137				chr11:65482381-65482382;chr11:65484137-65484138		8.77	10.53	11.90	6.25	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	5.13	3.33	6.25	6.00	5.71	NA	5.13	6.45	3.70	5.26	2.44	13.95	11.63	0.00	11.11	7.69	10.91	0.00	5.13	5.13	0.995999	1.000000
N	jcn_only_AD	ARHGEF10L	chr1	+	chr1:17965185-17966696;chr1:17965828-17966696;chr1:17965809-17966696	chr1:17966477-17966696		chr1:17965185-17965808;chr1:17965809-17965827;chr1:17965828-17966476	chr1:17965184-17965185;chr1:17965808-17965809;chr1:17965827-17965828		9.88	0.00	5.45	5.26	0.00	0.00	2.08	3.37	6.32	1.96	0.00	3.70	1.52	2.91	4.76	4.03	2.24	3.28	7.69	7.50	12.50	0.00	2.30	5.05	NA	13.09	7.95	6.38	5.97	7.09	7.89	6.00	28.57	1.30	3.49	5.10	2.08	7.70	5.62	0.927478	0.960930
N	jcn_only_AA	CTSB	chr8	-	chr8:11701776-11702590;chr8:11702330-11702590	chr8:11701751-11702590		chr8:11701751-11701775;chr8:11701776-11702329	chr8:11701750-11701751;chr8:11701775-11701776		93.08	96.04	95.12	90.68	92.15	93.81	86.30	78.75	81.48	83.82	84.91	85.88	85.75	82.39	87.25	82.20	85.14	86.51	84.74	65.86	78.48	85.29	89.17	86.34	100.00	98.57	100.00	84.89	86.56	90.51	98.92	100.00	81.68	88.21	89.78	90.04	86.03	87.73	1.71	0.654622	0.846812
N	jcn_only_AD	ABCC3	chr17	+	chr17:48756936-48757158;chr17:48755956-48757158	chr17:48755581-48757158		chr17:48755581-48755955;chr17:48755956-48756935	chr17:48755580-48755581;chr17:48755955-48755956		70.59	92.31	90.83	NA	93.75	NA	100.00	100.00	NA	100.00	94.59	100.00	100.00	NA	100.00	100.00	100.00	NA	90.00	93.33	91.67	100.00	96.72	100.00	NA	66.67	84.93	100.00	85.00	100.00	82.35	88.52	100.00	100.00	89.47	93.33	100.00	82.35	-17.65	0.095917	0.639657
K	alternative_donor	S100A10,SNRNP40	chr1	-	chr1:31732969-31734375	chr1:31732969-31733801		chr1:31733802-31734375	chr1:31734375-31734376		0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	2.04	0.00	NA	0.00	0.00	0.00	3.70	1.85	0.00	NA	NA	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.391002	0.657675
N	cassette	NFKB2	chr10	+	chr10:104158281-104159084;chr10:104158281-104159044	chr10:104158281-104158495;chr10:104158622-104159084,chr10:104158622-104159044		chr10:104158496-104158621			89.41	100.00	80.75	84.29	87.88	89.13	100.00	100.00	97.84	99.49	97.78	99.14	100.00	98.68	97.75	98.50	96.92	98.32	76.92	87.38	91.25	92.98	87.18	90.95	100.00	92.47	91.95	96.09	95.45	97.38	85.38	83.12	76.47	84.69	88.16	84.10	100.00	90.94	-9.06	0.998361	0.999450
K	cassette	PCED1A	chr20	-	chr20:2816356-2818877	chr20:2816356-2816684;chr20:2816961-2818877		chr20:2816685-2816960			70.00	88.57	78.95	85.71	85.19	100.00	NA	NA	79.17	NA	100.00	NA	100.00	NA	76.00	NA	100.00	NA	100.00	91.67	83.72	NA	88.24	86.67	75.86	90.91	80.00	100.00	100.00	100.00	100.00	85.00	84.21	NA	90.00	90.00	88.57	91.29	2.72	0.848212	0.949198
N	jcn_only_AD	EIF3K	chr19	+	chr19:39109968-39110976;chr19:39109864-39110976;chr19:39109939-39110976;chr19:39109943-39110976	chr19:39109958-39110976		chr19:39109864-39109938;chr19:39109939-39109942;chr19:39109943-39109957;chr19:39109958-39109967	chr19:39109863-39109864;chr19:39109938-39109939;chr19:39109942-39109943;chr19:39109957-39109958		3.95	3.63	7.45	3.95	2.87	2.26	2.49	0.00	0.00	2.49	2.08	3.01	2.16	3.92	1.11	2.88	0.99	0.00	2.30	4.76	3.57	4.14	2.66	0.65	2.29	3.23	4.76	2.84	3.38	0.00	4.76	4.17	5.81	3.08	4.59	3.49	2.40	3.94	1.54	0.736029	0.862625
K	jcn_only_AA	NCF4,XRCC6	chr22	+	chr22:42024235-42032239	chr22:42024235-42032116		chr22:42032117-42032239	chr22:42032239-42032240		100.00	100.00	100.00	100.00	94.59	NA	100.00	97.62	98.73	98.36	100.00	100.00	100.00	100.00	97.97	98.87	99.59	98.60	100.00	97.14	100.00	97.09	96.18	98.46	NA	100.00	100.00	97.22	96.91	100.00	96.67	98.21	NA	97.76	99.42	98.28	100.00	98.81	-1.19	0.079498	0.663989
K	intron_retention	SNHG15	chr7	-	chr7:45022922-45023420				chr7:45022921-45022922;chr7:45023420-45023421		13.46	9.80	11.48	10.69	8.11	9.37	NA	0.00	3.30	7.94	13.33	13.16	NA	0.00	6.18	7.63	9.09	6.52	7.25	6.98	9.44	16.92	13.21	18.18	0.00	9.09	8.77	11.90	12.50	14.81	8.91	11.63	9.57	14.55	14.29	19.09	8.41	7.95	-0.46	0.789395	1.000000
N	jcn_only_AA	TMEM57	chr1	+	chr1:25815785-25817900	chr1:25815785-25817836		chr1:25817837-25817900	chr1:25817900-25817901		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	6.67	0.00	0.00	0.00	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	AKAP8L	chr19	-	chr19:15508667-15510112	chr19:15508667-15509440;chr19:15509515-15510112		chr19:15509441-15509514			3.70	2.35	7.14	3.23	3.08	15.00	0.00	4.35	3.03	0.00	3.57	NA	3.57	0.00	4.65	0.00	12.00	NA	7.69	7.69	4.23	8.70	5.26	17.39	0.00	4.88	2.78	7.41	4.65	13.46	5.97	7.87	2.90	11.11	7.32	9.62	2.62	4.62	1.99	0.309346	0.709176
N	alternative_acceptor	COX4I1	chr16	+	chr16:85839471-85840432;chr16:85839471-85840313;chr16:85839471-85840365;chr16:85839471-85840343	chr16:85839471-85840061		chr16:85840062-85840313;chr16:85840314-85840343;chr16:85840344-85840365;chr16:85840366-85840432	chr16:85840313-85840314;chr16:85840343-85840344;chr16:85840365-85840366;chr16:85840432-85840433		2.39	2.00	4.28	1.76	1.63	1.16	0.23	0.00	0.00	0.52	0.42	0.00	0.44	0.00	0.84	0.25	0.70	0.38	2.15	4.98	2.31	2.89	2.02	2.03	1.26	3.41	2.40	1.32	1.85	1.31	5.88	4.04	2.64	2.52	2.72	2.54	1.63	2.90	1.27	0.264185	0.709013
N	jcn_only_AA	SRSF11	chr1	+	chr1:70716187-70716290;chr1:70716187-70716262	chr1:70716187-70716293		chr1:70716263-70716290;chr1:70716291-70716293	chr1:70716290-70716291;chr1:70716293-70716294		44.90	47.62	50.00	31.82	31.82	28.57	35.29	30.16	41.57	29.92	36.14	36.05	47.44	40.00	37.61	32.00	33.05	28.09	70.00	44.87	48.15	41.86	46.67	41.86	52.94	31.11	39.51	31.15	37.70	31.48	47.06	43.64	28.57	41.98	43.68	43.33	47.53	42.44	-5.09	0.304854	0.663989
K	alternative_acceptor	ARV1,NIT1	chr1	+	chr1:161089403-161089614	chr1:161089403-161089608		chr1:161089609-161089614	chr1:161089614-161089615		100.00	73.33	100.00	NA	91.67	NA	100.00	100.00	92.59	100.00	100.00	NA	87.50	87.50	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	93.75	93.75	100.00	6.25	0.318536	0.709013
N	alternative_acceptor	PPIF	chr10	+	chr10:81112149-81113462;chr10:81112149-81113366	chr10:81112149-81113400		chr10:81113367-81113400;chr10:81113401-81113462	chr10:81113400-81113401;chr10:81113462-81113463		4.69	0.00	3.22	2.29	3.26	0.00	1.92	1.99	2.81	3.01	2.40	3.19	2.42	3.64	2.53	2.27	2.86	3.43	1.75	4.07	3.30	2.23	2.44	2.76	0.00	2.10	2.53	2.01	2.43	2.08	6.38	4.36	3.37	3.19	2.71	2.80	1.83	3.86	2.02	0.028947	0.546324
K	intron_retention	RABL6	chr9	+	chr9:139723937-139726172				chr9:139723936-139723937;chr9:139726172-139726173		0.00	3.45	1.30	NA	0.00	NA	0.00	0.00	0.00	1.85	0.00	0.00	0.86	0.00	0.00	2.04	1.01	6.25	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	2.17	0.00	0.00	1.75	2.44	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	TIMM10	chr11	-	chr11:57297708-57297817;chr11:57297708-57298130;chr11:57297708-57298195	chr11:57297708-57298199		chr11:57297818-57298130;chr11:57298131-57298195;chr11:57298196-57298199	chr11:57298130-57298131;chr11:57298195-57298196;chr11:57298199-57298200		0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	14.29	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	0.00	18.18	NA	NA	NA	NA	NA	0.00	7.14	7.14	0.186226	0.563271
K	alternative_acceptor	SLIRP	chr14	+	chr14:78182223-78183822;chr14:78182223-78183838	chr14:78182223-78183844		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		5.26	1.27	11.76	4.76	4.69	4.94	6.45	NA	0.00	5.88	0.00	3.85	0.00	0.00	7.69	4.00	1.89	3.03	7.84	17.65	5.97	8.00	9.30	10.00	0.00	0.00	10.34	4.17	5.56	0.00	16.67	0.00	6.38	14.81	2.70	6.45	3.83	5.26	1.43	0.352320	0.709013
K	jcn_only_AA	FGD3	chr9	+	chr9:95795156-95796825	chr9:95795156-95796822		chr9:95796823-95796825	chr9:95796825-95796826		81.54	82.14	79.69	NA	74.42	NA	89.47	94.59	72.22	NA	86.96	NA	82.50	82.14	77.78	NA	90.32	NA	84.71	81.63	93.62	NA	80.43	NA	90.11	83.61	82.81	NA	87.10	NA	85.53	83.33	82.52	76.47	78.79	83.33	83.61	82.88	-0.74	0.877285	0.952994
K	cassette	CHD8	chr14	-	chr14:21859223-21859991	chr14:21859223-21859621;chr14:21859802-21859991		chr14:21859622-21859801			89.13	100.00	93.75	NA	95.83	NA	100.00	95.92	95.45	100.00	100.00	100.00	100.00	97.83	97.96	100.00	97.06	100.00	NA	88.10	96.30	95.45	92.11	91.30	NA	100.00	100.00	100.00	96.88	97.50	84.62	94.74	91.67	97.62	94.59	98.31	100.00	92.53	-7.47	0.141887	0.709176
K	jcn_only_AA	BRMS1L,PSMA3	chr14	+	chr14:58724717-58727676;chr14:58724717-58727686	chr14:58724717-58727665		chr14:58727666-58727676;chr14:58727677-58727686	chr14:58727676-58727677;chr14:58727686-58727687		96.30	100.00	96.46	95.04	97.69	100.00	98.18	95.62	94.19	98.29	100.00	97.07	100.00	95.38	94.92	95.30	97.69	98.92	100.00	96.30	100.00	98.48	93.41	97.97	100.00	95.78	97.25	94.65	100.00	96.28	93.63	98.19	98.72	94.91	95.17	97.99	100.00	95.70	-4.30	0.000022	0.012438
N	cassette	PSMD4	chr1	+	chr1:151237395-151237869	chr1:151237395-151237641;chr1:151237711-151237869		chr1:151237642-151237710			96.15	89.14	95.75	88.00	90.96	88.16	100.00	100.00	99.38	97.06	96.61	98.59	100.00	100.00	98.48	97.30	99.22	98.82	98.45	95.57	97.76	92.55	92.77	94.06	100.00	96.27	92.79	95.33	96.62	95.42	96.88	93.55	91.14	92.20	96.26	92.09	99.22	96.57	-2.65	0.654838	0.873328
K	jcn_only_AA	SLC25A39	chr17	-	chr17:42399897-42400175	chr17:42399921-42400175		chr17:42399897-42399920	chr17:42399896-42399897		0.00	8.33	8.96	NA	6.52	NA	18.26	20.00	25.71	25.64	28.57	26.79	20.17	26.92	27.27	29.47	20.55	13.33	11.76	6.67	20.59	12.50	14.71	15.38	0.00	20.00	19.23	33.33	14.52	10.00	18.18	12.90	6.90	12.50	13.33	15.00	10.04	19.09	9.04	0.410260	0.682643
N	cassette	ARSA	chr22	-	chr22:51063893-51064363	chr22:51063893-51064006;chr22:51064110-51064363		chr22:51064007-51064109			100.00	97.08	100.00	97.37	100.00	98.69	100.00	100.00	100.00	100.00	98.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.81	100.00	98.43	100.00	96.43	100.00	100.00	100.00	100.00	100.00	98.95	100.00	94.94	94.32	92.67	94.00	96.30	100.00	98.91	100.00	1.09	0.416373	0.728056
K	intron_retention	VPS28	chr8	-	chr8:145650435-145651065				chr8:145650434-145650435;chr8:145651065-145651066		4.12	10.32	8.77	7.02	7.91	7.25	1.55	1.04	0.96	1.20	2.29	0.00	2.46	0.00	3.66	2.06	2.67	2.56	3.57	7.84	6.67	10.20	9.24	11.11	8.86	8.16	10.06	8.89	5.65	5.08	7.41	12.87	5.59	7.25	3.03	6.59	4.58	5.77	1.19	0.928148	1.000000
K	alternative_first_exon	LILRB5,YIF1B	chr19	-	chr19:38800284-38806064,chr19:38800284-38806362,chr19:38800284-38807791;chr19:38800284-38806508,chr19:38800284-38806499	chr19:38800284-38806386,chr19:38800284-38806356	chr19:38806509-38806563	chr19:38806387-38806433			46.15	18.18	38.46	NA	47.62	NA	29.29	38.89	47.62	26.92	32.00	33.33	27.08	53.85	55.56	34.09	29.49	30.00	28.57	42.86	39.13	21.05	33.93	33.33	28.57	46.67	37.84	22.22	27.08	35.48	NA	38.10	41.67	48.39	34.38	40.00	28.57	46.15	17.58	0.002141	0.020421
K	alternative_acceptor	POR	chr7	+	chr7:75615560-75615654	chr7:75615560-75615634		chr7:75615635-75615654	chr7:75615654-75615655		4.46	2.81	4.21	2.63	3.91	2.27	0.00	0.00	0.00	1.30	1.00	0.00	1.41	0.00	0.00	0.97	0.00	0.00	3.15	4.05	2.78	3.90	2.31	0.00	1.69	3.90	2.68	2.61	2.15	2.78	5.00	4.50	4.38	4.47	3.30	3.70	2.25	3.97	1.72	0.570091	0.834831
N	alternative_donor	MRPS22	chr3	+	chr3:139071635-139074523	chr3:139073557-139074523		chr3:139071635-139073556	chr3:139071634-139071635		13.64	6.35	10.53	4.76	4.35	3.08	3.57	0.00	0.00	2.63	4.44	3.45	3.45	0.00	0.00	1.89	2.63	3.70	6.56	9.09	5.36	8.33	7.02	9.09	5.56	6.90	12.20	5.88	4.88	4.65	6.90	12.50	6.15	9.30	5.56	9.76	5.86	6.90	1.04	0.729827	0.890213
K	intron_retention	PCMT1	chr6	+	chr6:150123553-150131751				chr6:150123552-150123553;chr6:150131751-150131752		29.63	43.33	12.90	41.82	34.38	55.45	27.66	30.00	20.83	24.24	19.51	33.33	23.88	25.76	18.75	36.36	11.54	26.67	43.75	19.48	40.38	22.22	15.18	21.05	63.27	13.70	14.29	37.21	23.94	40.58	34.33	16.36	43.59	21.43	21.25	23.96	43.46	27.70	-15.77	0.902441	1.000000
K	cassette	RPLP0	chr12	-	chr12:120635266-120636656	chr12:120635266-120636356;chr12:120636543-120636656		chr12:120636357-120636542			97.41	96.75	98.92	95.49	96.48	95.24	97.83	98.81	98.24	98.18	98.38	98.33	98.75	97.67	99.17	98.31	99.50	99.27	96.77	97.26	94.26	98.02	97.36	97.30	96.79	100.00	98.24	97.90	97.35	96.60	94.78	98.18	96.91	96.79	96.11	96.31	96.85	97.54	0.69	0.666317	0.878382
K	intron_retention	PPP1R37	chr19	+	chr19:45649739-45649828				chr19:45649738-45649739;chr19:45649828-45649829		5.26	6.58	13.04	0.00	9.43	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.00	11.76	6.25	0.00	5.97	0.00	8.89	7.14	9.09	0.00	4.26	0.00	14.81	7.69	9.38	6.90	5.41	4.17	5.79	9.45	3.66	0.719421	1.000000
N	jcn_only_AD	PSME1	chr14	+	chr14:24607609-24607944;chr14:24607778-24607944;chr14:24607613-24607944;chr14:24607327-24607944	chr14:24607770-24607944					97.22	98.95	97.84	96.85	97.64	97.72	98.21	97.46	98.33	98.05	98.76	99.49	98.38	98.29	97.90	97.41	98.06	100.00	97.77	96.68	97.16	97.58	97.77	96.95	97.05	97.22	98.36	98.63	98.31	98.89	96.91	96.92	96.50	93.85	100.00	98.41	97.99	97.22	-0.77	0.268929	0.657607
K	intron_retention	LA16c-390E6.5	chr16	+	chr16:1495858-1495910				chr16:1495857-1495858;chr16:1495910-1495911		85.63	86.28	84.67	82.83	81.26	82.66	80.85	78.57	85.83	80.36	80.77	85.19	82.73	85.07	84.68	84.34	87.37	76.47	82.72	82.35	78.80	83.96	83.64	78.08	80.93	87.76	83.51	82.76	84.33	85.88	83.44	83.17	82.55	82.89	84.26	83.53	82.63	84.25	1.62	0.771925	1.000000
N	cassette	SPCS2	chr11	+	chr11:74660445-74687901;chr11:74660445-74680684	chr11:74660445-74676078;chr11:74676163-74680684,chr11:74676163-74687901		chr11:74676079-74676162			100.00	100.00	98.15	100.00	100.00	95.24	100.00	100.00	100.00	98.31	100.00	100.00	98.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.01	100.00	100.00	100.00	100.00	100.00	98.53	100.00	100.00	91.67	100.00	100.00	98.08	100.00	100.00	0.00	0.297261	0.709176
K	alternative_donor	NAA60	chr16	+	chr16:3535062-3535466	chr16:3535084-3535466		chr16:3535062-3535083	chr16:3535061-3535062		19.15	10.20	22.39	NA	19.23	NA	18.18	21.05	23.08	35.59	28.79	21.21	25.00	27.78	31.91	29.55	25.76	24.00	15.38	11.36	21.05	16.67	20.00	31.82	21.43	15.62	22.22	25.00	24.24	22.22	12.20	22.22	18.75	27.27	28.85	28.33	18.46	17.38	-1.08	0.929312	0.984606
N	alternative_donor	CCDC94	chr19	+	chr19:4258421-4261990	chr19:4261033-4261990		chr19:4258421-4261032	chr19:4258420-4258421		0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	4.17	0.00	0.00	5.26	0.00	0.00	2.38	0.00	5.56	0.00	8.33	0.00	4.55	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	PIK3R5	chr17	-	chr17:8785199-8787768;chr17:8785199-8788023	chr17:8785199-8785357		chr17:8785358-8787768;chr17:8787769-8788023	chr17:8787768-8787769;chr17:8788023-8788024		11.76	29.41	15.24	NA	12.12	NA	2.29	2.17	2.50	2.17	3.47	0.65	4.32	3.23	6.25	2.76	4.33	2.13	NA	9.16	NA	10.37	11.37	11.59	50.00	17.76	13.85	12.61	13.58	8.16	8.97	8.97	NA	15.74	12.13	10.32	16.87	9.07	-7.80	0.347761	0.650093
N	alternative_donor	RNPEPL1	chr2	+	chr2:241508496-241511839;chr2:241508532-241511839	chr2:241509554-241511839		chr2:241508496-241508531;chr2:241508532-241509553	chr2:241508495-241508496;chr2:241508531-241508532		0.00	5.00	6.67	NA	0.00	NA	1.43	0.00	0.00	3.57	2.44	0.00	1.32	3.85	4.76	5.56	2.41	0.00	NA	NA	NA	NA	7.41	NA	14.29	0.00	8.33	NA	0.00	NA	NA	NA	NA	8.33	8.33	7.69	3.21	0.00	-3.21	0.235654	0.607183
K	jcn_only_AD	PQBP1	chrX	+	chrX:48759662-48760008	chrX:48759795-48760008		chrX:48759662-48759794	chrX:48759661-48759662		96.97	95.33	97.92	97.70	95.74	100.00	100.00	100.00	100.00	94.74	100.00	86.67	100.00	100.00	98.61	93.10	95.65	100.00	97.83	97.30	97.17	96.43	95.00	87.50	98.99	100.00	95.74	97.62	96.67	98.08	95.83	90.38	97.10	100.00	89.74	96.97	98.41	98.65	0.24	0.897096	0.947545
K	intron_retention	SGSM3	chr22	+	chr22:40804434-40804630				chr22:40804433-40804434;chr22:40804630-40804631		9.09	4.69	9.68	12.50	2.44	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	6.25	NA	6.38	5.00	2.78	0.00	8.57	0.00	0.00	0.00	6.25	0.00	3.03	0.00	10.00	8.57	2.70	6.67	4.00	4.35	1.35	2.50	1.15	0.946498	1.000000
N	jcn_only_AA	ZNF276	chr16	+	chr16:89804314-89804405;chr16:89804314-89804414;chr16:89804314-89804383	chr16:89804314-89805599		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		0.00	0.00	9.52	0.00	8.33	0.00	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	13.33	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	NA	6.67	0.00	0.00	0.00	0.00	0.626511	0.835767
K	intron_retention		chr16	+	chr16:30507616-30507756				chr16:30507615-30507616;chr16:30507756-30507757		20.00	0.00	30.00	NA	NA	NA	0.00	0.00	0.00	NA	5.00	NA	2.86	0.00	NA	NA	0.00	NA	NA	4.17	NA	NA	7.14	NA	58.33	4.00	NA	NA	NA	NA	NA	NA	NA	NA	9.09	0.00	1.43	4.00	2.57	0.808143	1.000000
N	alternative_acceptor	TYROBP	chr19	-	chr19:36398260-36398347;chr19:36398150-36398347;chr19:36398167-36398347	chr19:36398164-36398347		chr19:36398150-36398163;chr19:36398164-36398166;chr19:36398167-36398259	chr19:36398149-36398150;chr19:36398163-36398164;chr19:36398166-36398167		23.19	25.79	21.73	26.08	25.56	26.06	20.05	20.78	19.45	22.58	22.28	22.89	21.62	21.02	21.25	21.72	24.01	25.13	26.07	25.58	23.95	24.31	24.40	25.37	24.90	21.37	21.47	22.37	22.37	22.41	25.95	24.59	26.04	26.95	24.59	26.66	25.34	22.28	-3.06	0.458371	0.761890
K	alternative_acceptor	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481235-7481544;chr17:7481235-7481418;chr17:7481235-7481482	chr17:7481235-7481437		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		3.61	2.12	1.17	1.91	2.37	2.03	0.27	0.00	0.52	0.22	0.16	0.25	0.00	0.35	0.46	0.30	0.15	0.00	0.59	2.53	2.72	1.65	0.66	1.59	1.42	1.56	2.54	1.02	1.24	0.96	5.24	3.21	0.70	2.76	1.64	2.52	0.65	2.04	1.40	0.166950	0.660713
K	intron_retention	MCOLN1	chr19	+	chr19:7591813-7592405				chr19:7591812-7591813;chr19:7592405-7592406		9.38	41.67	5.88	NA	16.67	NA	0.00	0.00	0.00	0.00	1.03	0.00	3.03	0.00	0.00	1.30	1.77	0.00	NA	0.00	0.00	9.09	14.29	0.00	45.45	4.76	9.52	0.00	2.33	0.00	12.50	16.67	31.25	19.05	8.82	0.00	31.25	2.38	-28.87	0.446243	1.000000
K	cassette	CINP	chr14	-	chr14:102815097-102822104	chr14:102815097-102816255;chr14:102816386-102822104		chr14:102816256-102816385			100.00	100.00	100.00	100.00	100.00	94.83	100.00	100.00	100.00	97.83	96.55	97.92	100.00	100.00	93.33	98.15	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	96.30	100.00	98.36	100.00	100.00	100.00	100.00	94.44	98.18	100.00	100.00	0.00	0.291821	0.709176
K	intron_retention		chrX	-	chrX:23724857-23725993				chrX:23724856-23724857;chrX:23725993-23725994		17.07	15.00	16.05	14.89	9.80	14.89	0.00	5.17	4.02	2.99	2.00	5.43	3.28	7.61	8.67	4.84	5.26	6.15	0.00	13.09	7.61	10.71	15.00	18.10	NA	15.66	15.38	15.07	10.61	13.41	17.24	17.79	9.52	18.98	13.25	17.29	3.28	14.38	11.10	0.180749	1.000000
K	coord_cassette	PDCD6	chr5	+	chr5:304337-314531	chr5:304337-306716;chr5:306870-311407;chr5:311518-314531		chr5:306717-306869;chr5:311408-311517			100.00	100.00	95.83	NA	93.10	NA	96.15	100.00	94.29	100.00	98.25	92.86	93.33	95.24	91.89	91.89	96.83	100.00	94.74	100.00	96.30	94.44	94.12	100.00	100.00	95.24	100.00	95.83	95.83	100.00	100.00	96.77	94.44	100.00	100.00	100.00	95.44	100.00	4.56	0.233639	0.643829
N	alternative_donor	NPM1	chr5	+	chr5:170832408-170834703	chr5:170834166-170834703		chr5:170832408-170834165	chr5:170832407-170832408		5.97	7.17	4.00	12.13	9.20	24.79	3.33	2.86	1.76	5.24	4.44	4.83	3.36	3.28	1.90	4.35	4.60	5.41	10.94	4.26	9.70	4.51	4.56	4.65	16.13	4.76	3.28	4.53	5.14	7.45	5.74	3.75	12.78	4.81	4.56	5.00	9.05	4.51	-4.54	0.090883	0.479695
N	jcn_only_AA	CYB5D1,PGS1	chr17	+	chr17:76411109-76415626	chr17:76411109-76413182		chr17:76413183-76415626	chr17:76415626-76415627		0.00	0.00	1.22	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	NA	13.33	0.00	8.11	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.501276	0.755645
N	alternative_donor	TAOK3	chr12	-	chr12:118588964-118590031	chr12:118588964-118589731		chr12:118589732-118590031	chr12:118590031-118590032		0.00	0.00	2.20	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	1.69	0.00	0.00	0.00	0.00	0.00	1.61	1.35	0.00	0.00	0.00	0.00	1.96	0.00	1.90	1.77	4.26	0.00	0.00	0.00	0.174845	0.563271
N	alternative_donor	CD163L1,NAP1L1	chr12	-	chr12:76443031-76443535	chr12:76443031-76443246		chr12:76443247-76443535	chr12:76443535-76443536		7.69	6.05	5.08	3.74	3.96	3.80	5.47	7.79	6.50	4.10	4.81	4.50	5.85	5.56	6.92	4.01	3.47	2.60	4.19	4.17	6.11	4.62	4.45	3.57	6.40	5.81	5.46	3.52	4.63	4.14	5.34	5.56	4.71	4.02	4.76	3.93	5.66	5.68	0.02	0.387443	0.657675
K	intron_retention	DLGAP4	chr20	+	chr20:35125470-35127990				chr20:35125469-35125470;chr20:35127990-35127991		4.17	0.00	4.17	NA	NA	NA	0.00	1.69	1.33	1.98	0.00	0.00	0.00	0.00	1.67	1.96	0.00	2.22	NA	5.56	6.67	10.00	10.81	10.26	0.00	5.26	7.32	5.00	9.09	9.62	7.69	4.35	NA	7.02	5.88	11.25	0.00	4.71	4.71	0.231114	1.000000
K	intron_retention		chr16	+	chr16:67231550-67231769				chr16:67231549-67231550;chr16:67231769-67231770		4.44	4.17	3.17	2.86	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	1.92	0.00	0.00	2.82	5.45	0.00	0.00	5.80	0.00	0.00	0.00	3.03	5.41	6.25	3.12	1.35	2.78	1.56	0.96	-0.60	0.355306	1.000000
N	cassette	AC002398.9,LIN37	chr19	+	chr19:36243735-36243987	chr19:36243735-36243814;chr19:36243901-36243987		chr19:36243815-36243900			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	95.00	100.00	100.00	100.00	95.45	100.00	94.74	100.00	100.00	100.00	100.00	100.00	0.00	0.589386	0.844083
N	jcn_only_AA	TMEM110,TMEM110-MUSTN1	chr3	-	chr3:52881568-52883807;chr3:52881565-52883807;chr3:52883231-52883807	chr3:52878958-52883807		chr3:52878958-52881564;chr3:52881565-52881567;chr3:52881568-52883230	chr3:52878957-52878958;chr3:52881564-52881565;chr3:52881567-52881568		100.00	60.00	NA	NA	NA	80.00	91.67	96.43	93.85	87.50	86.21	94.81	90.00	93.94	96.43	90.48	96.15	91.18	NA	90.32	73.33	NA	100.00	95.24	NA	100.00	NA	100.00	NA	93.18	91.18	NA	69.23	90.91	NA	95.92	79.62	95.19	15.57	0.107187	0.663989
N	alternative_acceptor	TMEM128	chr4	-	chr4:4237984-4239553;chr4:4237978-4239553	chr4:4238805-4239553		chr4:4237978-4237983;chr4:4237984-4238804	chr4:4237977-4237978;chr4:4237983-4237984		15.00	20.00	21.28	NA	11.76	NA	6.67	10.00	7.69	9.09	17.65	NA	26.32	33.33	20.59	38.46	30.77	NA	NA	13.04	7.14	14.29	12.90	20.00	NA	12.50	13.33	NA	25.00	15.38	8.00	12.50	10.00	27.27	25.93	29.17	15.00	12.77	-2.23	0.942973	0.984632
N	alternative_acceptor	UGP2	chr2	+	chr2:64117320-64118217;chr2:64117320-64118253	chr2:64117320-64118224		chr2:64118218-64118224;chr2:64118225-64118253	chr2:64118224-64118225;chr2:64118253-64118254		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.31	0.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.388828	0.709013
K	intron_retention	MITD1	chr2	-	chr2:99785934-99786012				chr2:99785933-99785934;chr2:99786012-99786013		24.32	26.67	30.14	26.09	26.67	31.43	0.00	0.00	9.52	8.33	7.69	NA	4.76	0.00	6.67	NA	4.55	NA	18.95	32.26	22.54	31.82	28.30	41.18	21.43	31.25	31.88	24.00	18.00	25.00	32.14	34.12	21.43	40.54	34.55	30.61	20.19	27.79	7.60	0.885904	1.000000
K	intron_retention	GADD45B	chr19	+	chr19:2477250-2477485				chr19:2477249-2477250;chr19:2477485-2477486		6.99	13.79	6.35	4.59	3.70	1.72	0.00	0.00	0.00	0.46	0.00	0.75	0.00	0.00	1.23	0.63	0.00	0.31	5.00	7.32	2.83	6.51	9.09	4.92	0.00	5.13	4.03	3.98	6.25	2.98	15.00	9.52	14.89	4.97	8.51	4.25	2.50	6.06	3.56	0.999971	1.000000
N	alternative_acceptor	VPS33B	chr15	-	chr15:91548350-91548609	chr15:91548512-91548609		chr15:91548350-91548511	chr15:91548349-91548350		0.00	0.00	10.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	4.55	0.00	NA	0.00	0.00	NA	5.26	0.00	NA	5.56	0.00	4.55	3.23	0.00	0.00	4.17	4.55	0.00	2.27	2.27	0.076624	0.585944
N	alternative_acceptor	TMEM256-PLSCR3	chr17	-	chr17:7293181-7293952	chr17:7293761-7293952		chr17:7293181-7293760	chr17:7293180-7293181		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	alternative_donor	ADAP2	chr17	+	chr17:29283410-29284852	chr17:29283488-29284852		chr17:29283410-29283487	chr17:29283409-29283410		90.24	91.11	92.59	NA	92.45	NA	93.51	91.93	95.45	83.33	94.09	93.33	94.14	92.61	93.24	92.86	94.14	100.00	90.48	88.79	93.75	75.00	88.46	NA	88.46	90.00	89.47	87.50	95.33	90.91	88.89	90.62	85.71	91.89	91.30	90.91	90.80	90.12	-0.67	0.915285	0.981916
N	alternative_acceptor	ENTPD6,NPEPL1,STX16-NPEPL1	chr20	+	chr20:57282257-57287534	chr20:57282257-57284092		chr20:57284093-57287534	chr20:57287534-57287535		3.85	2.04	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	2.44	0.00	3.12	0.00	3.12	0.00	0.00	5.26	0.00	0.00	2.70	6.67	1.79	4.76	2.08	6.25	2.78	0.00	0.00	3.03	0.00	4.35	11.11	13.04	0.90	1.93	1.03	0.308307	0.709013
N	jcn_only_AA	MGAT4B	chr5	-	chr5:179228720-179228783;chr5:179228693-179228783;chr5:179228695-179228783	chr5:179228678-179228783		chr5:179228678-179228692;chr5:179228693-179228694;chr5:179228695-179228719	chr5:179228677-179228678;chr5:179228692-179228693;chr5:179228694-179228695		5.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.182881	0.663989
K	cassette	TIMM8B	chr11	-	chr11:111956187-111957363	chr11:111956187-111956701;chr11:111957035-111957363		chr11:111956702-111957034			11.67	13.33	18.18	13.33	14.63	7.81	12.82	15.94	17.24	15.05	15.45	10.13	12.70	11.63	14.49	11.17	15.97	15.07	8.39	11.94	7.39	12.07	14.95	19.05	9.80	20.34	15.38	10.64	12.24	10.13	17.98	18.67	12.10	20.00	24.14	16.44	12.40	13.94	1.54	0.087056	0.652861
K	intron_retention	QRICH1	chr3	-	chr3:49070207-49070552				chr3:49070206-49070207;chr3:49070552-49070553		6.25	0.00	14.00	NA	10.00	NA	3.23	6.90	0.00	0.00	0.00	0.00	5.88	0.00	6.52	0.00	2.04	0.00	0.00	3.45	NA	12.50	9.38	9.52	NA	17.24	11.36	18.75	9.52	5.26	5.26	14.29	NA	3.33	12.90	5.00	1.61	5.75	4.14	0.492468	1.000000
K	intron_retention	ANKH	chr5	-	chr5:14713083-14713652				chr5:14713082-14713083;chr5:14713652-14713653		17.39	0.00	38.10	0.00	0.00	0.00	2.19	16.00	54.55	6.12	0.78	10.71	1.60	18.75	63.64	3.23	0.72	4.35	0.00	11.76	0.00	0.00	0.51	8.00	2.60	50.00	38.46	2.70	0.00	NA	NA	60.00	0.00	5.08	2.86	20.69	0.80	17.39	16.59	0.060115	1.000000
K	intron_retention		chr14	-	chr14:35255428-35261980				chr14:35255427-35255428;chr14:35261980-35261981		8.00	11.11	7.14	0.00	NA	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.64	9.09	0.00	0.00	0.00	5.56	1.37	0.00	0.00	5.26	0.00	0.00	0.00	0.00	6.25	4.35	7.69	8.33	5.00	2.17	0.00	-2.17	0.431590	1.000000
K	intron_retention	ARHGEF11	chr1	-	chr1:156909703-156909998				chr1:156909702-156909703;chr1:156909998-156909999		9.23	18.75	17.11	NA	NA	13.46	0.00	0.71	1.44	0.00	0.00	0.78	0.00	1.59	3.66	0.00	0.00	1.87	NA	12.50	8.33	9.09	3.12	8.70	0.00	8.06	12.86	0.00	0.00	4.23	12.50	11.11	NA	9.76	7.55	13.77	0.00	8.64	8.64	0.826356	1.000000
N	jcn_only_AA	LILRB4	chr19	+	chr19:55178201-55179088;chr19:55178201-55178815;chr19:55178201-55178261;chr19:55178201-55178293	chr19:55178201-55179085		chr19:55178262-55178293;chr19:55178294-55178815;chr19:55178816-55179085;chr19:55179086-55179088	chr19:55178293-55178294;chr19:55178815-55178816;chr19:55179085-55179086;chr19:55179088-55179089		50.54	60.71	46.13	47.38	51.85	48.29	50.13	47.48	46.18	46.37	50.44	46.69	50.87	48.97	47.40	46.53	50.52	43.07	46.41	45.94	46.84	47.32	47.32	45.46	46.07	49.28	52.37	50.08	53.60	49.19	47.84	49.87	49.73	48.55	47.14	46.21	49.93	48.41	-1.52	0.347847	0.663989
K	intron_retention	PRR14	chr16	+	chr16:30667261-30667352				chr16:30667260-30667261;chr16:30667352-30667353		1.59	2.11	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	4.08	4.81	0.00	1.54	0.00	6.10	1.61	3.90	0.00	0.00	0.00	8.74	8.03	7.26	0.00	2.00	2.17	2.78	1.60	-1.18	0.868590	1.000000
N	alternative_donor	CCDC107	chr9	+	chr9:35658725-35660397	chr9:35660240-35660397		chr9:35658725-35660239	chr9:35658724-35658725		7.69	1.14	6.45	5.88	1.49	5.88	0.00	0.00	0.00	0.00	2.70	0.00	3.57	0.00	3.45	0.00	0.00	NA	0.00	5.41	1.75	6.67	3.12	NA	4.76	5.26	5.41	5.56	2.33	0.00	5.13	5.71	0.95	5.88	4.00	5.88	1.04	5.20	4.15	0.189898	0.565974
N	cassette	PLD3	chr19	+	chr19:40854632-40872325;chr19:40871493-40872378;chr19:40871493-40872325;chr19:40871493-40872290;chr19:40871493-40872285;chr19:40854676-40872325;chr19:40854676-40872285;chr19:40854676-40872290	chr19:40854676-40871624,chr19:40854632-40871624,chr19:40871493-40871624;chr19:40871838-40872290,chr19:40871838-40872325,chr19:40871838-40872285,chr19:40871838-40872378		chr19:40871625-40871837			82.08	73.24	71.74	84.62	80.61	100.00	95.75	97.35	94.19	95.77	95.98	95.42	95.08	98.50	95.82	93.35	93.42	93.31	72.41	81.13	90.30	77.33	80.35	78.43	80.77	88.74	84.76	86.10	84.41	86.11	87.33	82.49	77.17	83.13	81.99	79.31	78.97	88.03	9.06	0.228094	0.709176
K	jcn_only_AA	CTD-2006C1.2,SAFB	chr19	+	chr19:5657359-5661531	chr19:5657359-5661528		chr19:5661529-5661531	chr19:5661531-5661532		46.51	42.03	41.48	47.50	41.35	50.72	44.00	34.48	42.55	41.94	45.10	28.95	50.00	43.18	44.19	51.32	48.48	50.00	42.05	39.24	35.92	42.35	48.51	53.97	28.75	35.59	43.88	44.93	44.87	42.42	38.32	41.34	48.36	32.93	45.45	40.00	43.02	38.78	-4.24	0.430248	0.699533
K	intron_retention	TNFAIP2	chr14	+	chr14:103593967-103596076				chr14:103593966-103593967;chr14:103596076-103596077		6.19	5.15	4.23	12.50	NA	23.08	0.00	0.00	0.34	0.81	0.00	0.18	0.78	0.00	1.23	0.39	0.00	0.25	0.00	2.94	3.85	3.35	3.48	2.44	13.79	2.42	2.48	1.11	1.52	2.18	1.87	2.49	17.65	2.20	1.94	2.01	2.97	2.15	-0.82	0.468918	1.000000
K	intron_retention		chr9	+	chr9:140167068-140167233				chr9:140167067-140167068;chr9:140167233-140167234		0.00	0.00	2.27	0.00	4.08	4.55	0.00	0.00	0.00	0.00	0.00	NA	1.52	6.90	2.08	2.78	3.23	NA	1.43	0.00	2.38	0.00	3.77	0.00	6.85	0.00	2.00	0.00	5.41	3.85	3.23	2.63	3.30	0.00	0.00	0.00	1.48	0.00	-1.48	0.912362	1.000000
N	jcn_only_AD	METTL18	chr1	-	chr1:153903334-153903498	chr1:153903334-153903422		chr1:153903423-153903498	chr1:153903498-153903499		78.72	77.14	79.66	NA	80.77	NA	90.70	100.00	88.89	83.33	91.18	NA	94.55	100.00	96.30	100.00	90.48	NA	54.55	85.00	85.71	78.26	87.04	100.00	NA	89.36	86.79	100.00	91.67	100.00	71.43	70.73	100.00	80.95	76.92	83.33	90.70	87.18	-3.52	0.681566	0.836094
K	alternative_donor	SUPT4H1	chr17	-	chr17:56428870-56429384;chr17:56428870-56429427	chr17:56428870-56429425		chr17:56429385-56429425;chr17:56429426-56429427	chr17:56429425-56429426;chr17:56429427-56429428		5.26	14.00	8.59	0.00	9.84	6.67	14.18	7.55	7.95	11.90	13.97	10.39	10.32	7.98	8.12	11.96	8.11	8.82	8.89	6.25	5.63	7.32	9.76	11.76	6.67	8.00	8.27	10.81	11.11	8.51	5.13	4.82	8.93	11.54	7.35	9.64	9.62	6.90	-2.72	0.026100	0.316834
K	cassette	RNF10	chr12	+	chr12:121004784-121012270;chr12:121004784-121013433	chr12:121004784-121008993;chr12:121009095-121012270,chr12:121009095-121013433		chr12:121008994-121009094			87.76	85.19	91.35	95.38	95.35	100.00	96.36	95.38	94.44	98.36	97.06	98.11	98.28	94.12	93.06	93.06	94.92	97.92	92.45	93.55	91.03	96.49	94.03	90.74	92.75	95.45	91.74	98.18	97.14	97.62	95.40	92.86	87.88	95.88	92.22	95.76	92.60	94.75	2.15	0.552871	0.820483
K	jcn_only_AA	RHOT2	chr16	+	chr16:720558-720674;chr16:720558-720773	chr16:720558-720695		chr16:720675-720695;chr16:720696-720773	chr16:720695-720696;chr16:720773-720774		0.00	0.00	3.12	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	4.17	4.55	0.00	4.00	0.00	11.54	5.13	15.38	0.00	3.33	0.00	0.00	1.56	1.56	0.859328	0.944239
K	intron_retention	DPP7	chr9	-	chr9:140009029-140009098				chr9:140009028-140009029;chr9:140009098-140009099		10.00	15.44	15.28	23.08	17.02	NA	25.25	19.05	27.08	22.54	22.22	12.31	29.49	42.86	38.10	35.85	16.47	19.15	16.13	27.59	14.29	25.00	25.86	16.67	25.24	10.98	16.67	20.00	20.41	7.69	15.56	16.67	23.08	15.15	22.50	16.28	24.16	17.30	-6.85	0.928818	1.000000
N	jcn_only_AA	BAK1	chr6	-	chr6:33540284-33541810;chr6:33541685-33541810	chr6:33535804-33541810		chr6:33535804-33540283;chr6:33540284-33541684	chr6:33535803-33535804;chr6:33540283-33540284		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	18.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention		chr1	+	chr1:161185161-161188030				chr1:161185160-161185161;chr1:161188030-161188031		3.12	2.38	3.83	2.44	1.82	2.78	0.00	1.65	0.33	0.94	1.00	0.59	0.48	1.92	2.90	1.14	1.35	1.99	2.15	4.47	1.54	1.02	3.74	5.84	2.06	3.98	2.14	3.42	1.46	5.46	1.68	2.32	2.10	1.38	3.18	5.87	2.08	2.52	0.44	0.452099	1.000000
K	jcn_only_AD	EIF4B	chr12	+	chr12:53428494-53431192	chr12:53428509-53431192		chr12:53428494-53428508	chr12:53428493-53428494		6.00	17.39	1.79	4.17	5.17	7.41	8.77	9.09	8.97	7.28	9.59	8.00	12.15	17.14	8.05	5.56	10.17	6.25	6.52	12.20	7.14	9.26	8.74	10.29	0.00	13.79	10.47	10.87	10.71	12.20	9.30	10.47	7.27	8.70	9.60	9.01	8.02	10.75	2.73	0.395189	0.660946
N	alternative_acceptor	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500583;chr10:35495980-35500588;chr10:35495980-35500181	chr10:35495980-35498239		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		4.40	1.85	5.61	1.49	1.02	1.35	1.85	2.65	5.33	1.96	3.17	2.86	1.33	3.74	3.12	4.00	3.03	3.64	0.00	5.30	2.67	3.23	3.85	2.50	1.61	5.04	5.59	2.17	2.86	1.27	5.52	5.30	2.86	3.85	2.47	3.17	1.73	4.72	2.99	0.000692	0.242646
N	alternative_acceptor	SP3	chr2	-	chr2:174772694-174777797	chr2:174774986-174777797		chr2:174772694-174774985	chr2:174772693-174772694		96.43	100.00	86.52	100.00	100.00	NA	100.00	97.44	100.00	100.00	100.00	100.00	100.00	94.44	92.50	93.75	100.00	100.00	100.00	89.36	100.00	92.59	86.15	100.00	100.00	96.08	98.33	100.00	94.74	100.00	95.12	89.71	100.00	100.00	90.32	92.11	100.00	95.60	-4.40	0.006807	0.405868
N	alternative_acceptor	FIS1	chr7	-	chr7:100884188-100887287	chr7:100884464-100887287		chr7:100884188-100884463	chr7:100884187-100884188		0.00	0.66	5.56	0.96	0.48	0.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.44	3.45	1.94	0.00	0.68	0.00	1.73	0.00	0.00	0.00	0.00	0.00	5.13	4.00	0.46	2.08	0.00	0.88	0.45	0.00	-0.45	0.397768	0.714457
N	jcn_only_AD	EIF6,RRBP1	chr20	-	chr20:17594866-17595384;chr20:17594866-17595414	chr20:17594866-17595381		chr20:17595382-17595384;chr20:17595385-17595414	chr20:17595384-17595385;chr20:17595414-17595415		92.02	89.24	96.67	92.11	96.72	93.46	100.00	96.03	97.92	100.00	97.40	95.69	97.26	98.90	96.63	97.18	100.00	96.81	94.20	90.85	95.42	92.00	93.33	91.80	91.19	94.48	96.34	96.97	100.00	96.59	89.53	91.25	89.81	90.74	94.00	90.06	92.69	93.25	0.56	0.993736	0.998507
K	intron_retention	ALYREF	chr17	-	chr17:79846460-79847057				chr17:79846459-79846460;chr17:79847057-79847058		1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.69	0.00	0.00	0.69	0.00	2.33	1.30	0.00	0.58	0.00	9.52	3.06	2.50	0.00	0.67	0.60	0.00	1.93	1.93	0.368521	1.000000
N	alternative_donor	CRABP2,MEF2D	chr1	-	chr1:156438092-156438571	chr1:156438092-156438549		chr1:156438550-156438571	chr1:156438571-156438572		9.09	0.00	4.44	NA	0.00	NA	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	6.90	2.38	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.179657	0.563271
K	intron_retention	TIMMDC1	chr3	+	chr3:119236163-119242452				chr3:119236162-119236163;chr3:119242452-119242453		13.39	0.00	9.17	3.57	1.80	4.62	0.00	64.29	36.11	9.68	0.00	14.52	0.00	61.76	46.91	15.38	0.00	17.19	0.78	18.10	3.80	7.14	1.40	17.50	0.00	52.00	11.76	18.97	3.48	21.59	8.26	5.00	0.00	13.75	5.04	21.93	0.00	35.05	35.05	0.056304	1.000000
K	intron_retention	MAPK13	chr6	+	chr6:36098479-36099047				chr6:36098478-36098479;chr6:36099047-36099048		0.00	0.00	5.56	0.00	6.06	NA	0.88	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.00	0.71	0.91	0.00	NA	4.00	0.00	4.76	3.64	1.52	NA	3.45	8.57	0.00	11.29	0.00	5.88	8.33	0.00	6.85	8.70	5.94	0.00	1.73	1.73	0.525449	1.000000
N	alternative_acceptor		chr9	+	chr9:35660856-35660946;chr9:35660856-35660974	chr9:35660856-35660936		chr9:35660937-35660946;chr9:35660947-35660974	chr9:35660946-35660947;chr9:35660974-35660975		98.18	99.44	97.73	97.50	99.17	98.77	100.00	100.00	94.74	100.00	100.00	100.00	96.67	96.97	96.30	100.00	100.00	NA	99.47	97.14	98.65	93.33	98.68	100.00	99.56	93.75	98.18	96.30	98.61	95.83	97.62	97.30	98.98	96.88	97.62	96.55	99.45	97.38	-2.08	0.108798	0.600043
N	alternative_donor	CD55	chr1	+	chr1:207510164-207510673	chr1:207510596-207510673		chr1:207510164-207510595	chr1:207510163-207510164		2.43	0.00	1.74	0.00	0.00	0.00	3.23	6.00	3.68	5.88	5.56	3.85	0.00	3.12	1.68	2.08	0.00	2.22	0.00	3.49	1.45	2.78	0.00	2.74	0.00	3.85	3.56	0.00	0.00	0.00	1.09	2.32	0.00	3.92	0.00	1.73	0.00	3.31	3.31	0.009053	0.212718
K	coord_cassette	DOT1L	chr19	+	chr19:2227127-2229783	chr19:2227127-2227361;chr19:2227467-2227735;chr19:2228382-2229783		chr19:2227362-2227466;chr19:2227736-2228381			13.33	6.25	6.06	1.44	0.00	1.85	0.00	0.00	0.00	1.33	0.00	8.00	0.00	0.00	4.17	3.64	3.45	9.84	0.00	6.67	3.45	9.47	1.23	1.94	NA	5.88	5.88	2.08	2.86	11.29	4.17	5.26	0.00	2.56	2.86	13.28	0.00	5.03	5.03	0.153290	0.643829
K	intron_retention	MFSD10	chr4	-	chr4:2932681-2932787				chr4:2932680-2932681;chr4:2932787-2932788		16.13	18.57	21.74	33.33	21.43	19.70	5.17	5.56	10.53	11.54	8.57	0.00	11.76	13.64	16.13	17.14	14.58	9.09	15.79	7.14	16.67	24.14	24.29	25.00	6.52	13.64	10.53	22.58	16.36	16.67	14.29	10.00	13.58	18.18	15.79	17.14	12.67	13.64	0.97	0.571754	1.000000
N	jcn_only_AA	GSTZ1,PSMC6	chr14	+	chr14:77796703-77797411	chr14:77796703-77797386		chr14:77797387-77797411	chr14:77797411-77797412		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	7.14	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.373901	0.663989
K	jcn_only_AD	MBD4	chr3	-	chr3:129152980-129155303	chr3:129152980-129155285		chr3:129155286-129155303	chr3:129155303-129155304		13.85	48.15	18.81	40.00	24.49	NA	22.58	28.57	29.41	28.00	36.00	NA	32.00	23.91	28.00	29.63	33.54	NA	17.39	20.51	22.73	40.00	31.82	NA	NA	27.78	27.63	22.22	30.43	25.00	28.12	22.03	20.83	34.21	23.08	21.43	22.58	25.84	3.27	0.495623	0.739002
N	jcn_only_AD	CPVL	chr7	-	chr7:29160688-29185736;chr7:29160688-29186044	chr7:29160688-29185956		chr7:29185737-29185956;chr7:29185957-29186044	chr7:29185956-29185957;chr7:29186044-29186045		8.04	7.53	8.14	11.11	8.14	NA	7.01	6.17	7.14	6.52	6.67	5.09	7.31	13.64	10.00	5.43	4.24	5.17	16.67	4.82	0.00	8.11	6.91	5.33	NA	8.62	8.93	6.93	6.67	8.00	6.41	7.63	10.00	8.37	7.17	8.31	7.53	7.22	-0.31	0.453704	0.707855
K	intron_retention		chr3	+	chr3:52538893-52539018				chr3:52538892-52538893;chr3:52539018-52539019		1.18	6.58	1.00	NA	0.00	0.00	0.67	0.00	0.00	0.35	0.98	0.16	1.39	1.98	0.00	0.92	0.84	0.19	2.41	0.00	NA	0.00	1.06	0.00	7.01	0.00	2.47	0.00	1.93	0.69	0.00	0.00	4.88	0.00	1.77	0.20	3.65	0.00	-3.65	0.197144	1.000000
K	cassette	UBE2J2	chr1	-	chr1:1192691-1198725	chr1:1192691-1197648;chr1:1197771-1198725		chr1:1197649-1197770			0.00	0.00	1.82	9.09	0.00	0.00	2.13	4.17	0.00	3.53	4.69	2.08	2.17	0.00	2.56	2.25	1.75	0.00	7.14	0.00	4.17	5.26	3.57	2.86	NA	0.00	2.94	6.25	4.55	0.00	0.00	2.17	0.00	2.04	3.92	1.54	2.13	0.00	-2.13	0.321411	0.709176
N	jcn_only_AA	NAGK	chr2	+	chr2:71299882-71299955;chr2:71299882-71300611	chr2:71299882-71300592		chr2:71299956-71300592;chr2:71300593-71300611	chr2:71300592-71300593;chr2:71300611-71300612		2.69	2.89	0.00	0.00	1.12	0.00	0.00	1.06	1.75	0.00	0.00	0.00	0.00	1.38	0.00	0.00	0.68	0.00	2.13	3.57	1.43	2.44	2.08	0.00	0.00	3.18	3.70	0.83	1.91	0.00	4.20	5.97	2.84	0.00	1.15	1.60	1.06	2.94	1.87	0.110968	0.663989
K	cassette	CTBS	chr1	-	chr1:85031696-85036264	chr1:85031696-85035613;chr1:85035823-85036264		chr1:85035614-85035822			96.67	100.00	93.01	NA	95.65	NA	88.52	88.14	82.88	87.04	90.41	96.72	85.00	93.48	81.93	85.71	85.14	90.38	90.00	93.51	88.46	93.75	87.72	92.00	NA	94.38	89.80	95.00	90.62	95.83	91.53	94.02	92.86	86.76	94.34	92.31	90.00	93.50	3.50	0.570287	0.830383
K	alternative_acceptor	ATG16L2	chr11	+	chr11:72528901-72532592;chr11:72528901-72532712;chr11:72528901-72531181	chr11:72528901-72532243		chr11:72531182-72532243;chr11:72532244-72532592;chr11:72532593-72532712	chr11:72532243-72532244;chr11:72532592-72532593;chr11:72532712-72532713		24.00	44.44	33.85	NA	NA	NA	7.69	NA	NA	NA	NA	NA	7.69	NA	NA	NA	NA	NA	10.00	21.43	18.18	NA	20.00	NA	17.86	25.00	28.57	NA	15.79	NA	30.00	28.26	23.08	17.65	16.67	7.69	13.93	24.50	10.57	0.314303	0.709013
N	jcn_only_AA	PPM1G	chr2	-	chr2:27604589-27604992	chr2:27604673-27604992		chr2:27604589-27604672	chr2:27604588-27604589		100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	93.75	100.00	96.43	100.00	100.00	96.08	97.96	96.72	100.00	100.00	100.00	100.00	98.31	96.20	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	98.41	96.49	100.00	96.43	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	SDR39U1	chr14	-	chr14:24909808-24909988				chr14:24909807-24909808;chr14:24909988-24909989		100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	90.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
N	jcn_only_AA	TNRC18	chr7	-	chr7:5353495-5354614	chr7:5353535-5354614		chr7:5353495-5353534	chr7:5353494-5353495		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AA	UNC45A	chr15	+	chr15:91479213-91479514	chr15:91479213-91479366		chr15:91479367-91479514	chr15:91479514-91479515		6.67	0.00	4.17	NA	NA	NA	2.78	0.00	0.00	7.14	0.00	0.00	4.76	3.57	0.00	5.88	0.00	NA	NA	20.00	NA	NA	6.67	NA	0.00	5.26	0.00	NA	7.14	NA	NA	11.76	NA	NA	15.00	18.18	1.39	5.26	3.87	0.208807	0.663989
K	jcn_only_AA	DNAJC17	chr15	-	chr15:41068491-41068739	chr15:41068600-41068739		chr15:41068491-41068599	chr15:41068490-41068491		0.00	0.00	0.00	NA	12.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.57	NA	3.57	0.00	0.00	NA	7.41	NA	0.00	NA	5.00	0.00	0.00	NA	NA	7.69	0.00	NA	4.55	8.33	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	CDK16	chrX	+	chrX:47088044-47088129				chrX:47088043-47088044;chrX:47088129-47088130		5.00	0.00	5.80	1.75	0.00	3.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.70	0.00	0.00	0.00	1.82	6.38	5.43	7.50	1.75	6.78	0.00	3.45	1.33	0.00	0.00	0.99	18.07	13.00	6.90	5.08	6.82	4.50	0.00	4.22	4.22	0.419458	1.000000
N	alternative_acceptor	PCMT1	chr6	+	chr6:150123506-150131751	chr6:150123506-150131178		chr6:150131179-150131751	chr6:150131751-150131752		2.47	3.70	4.76	2.13	1.23	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.39	0.00	1.37	2.04	3.57	2.38	3.70	4.35	0.00	0.00	2.56	1.41	4.48	2.47	6.35	2.50	3.41	2.02	1.40	-0.62	0.809007	0.931261
N	alternative_acceptor	UNC13D	chr17	-	chr17:73827499-73829046;chr17:73827343-73829046	chr17:73827430-73829046		chr17:73827343-73827429;chr17:73827430-73827498	chr17:73827342-73827343;chr17:73827429-73827430		75.56	90.48	87.50	NA	91.67	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	89.13	92.86	NA	95.45	NA	NA	89.13	91.89	NA	100.00	NA	88.46	86.84	94.12	92.86	93.75	87.50	100.00	89.13	-10.87	0.160283	0.660713
K	intron_retention		chr10	+	chr10:22607098-22607200				chr10:22607097-22607098;chr10:22607200-22607201		3.70	0.00	5.08	NA	0.00	NA	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	5.13	0.00	0.00	NA	0.00	7.14	0.00	0.00	2.74	8.33	0.00	3.85	1.79	0.00	0.00	0.00	0.00	4.92	0.00	3.12	3.70	0.00	0.00	1.85	1.85	0.415470	1.000000
K	intron_retention	PISD	chr22	-	chr22:32015823-32016538				chr22:32015822-32015823;chr22:32016538-32016539		7.32	2.70	7.14	0.00	0.00	NA	0.00	2.33	0.00	0.00	1.35	0.00	3.39	0.00	0.00	4.05	1.43	0.00	0.00	6.67	3.45	7.32	5.56	9.38	NA	0.00	2.33	5.26	3.57	0.00	7.14	5.77	0.00	4.55	7.69	8.33	0.00	4.50	4.50	0.522238	1.000000
K	alternative_last_exon	CARD8	chr19	-	chr19:48709778-48718596	chr19:48715233-48718596	chr19:48709641-48709777	chr19:48711361-48715232			97.78	100.00	98.55	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.75	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.21	NA	100.00	NA	100.00	96.77	100.00	100.00	96.55	100.00	100.00	100.00	0.00	0.363217	0.535374
K	alternative_donor	C2CD2,SUMO3	chr21	-	chr21:46234020-46238583	chr21:46234020-46237862		chr21:46237863-46238583	chr21:46238583-46238584		100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	100.00	96.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	NA	100.00	100.00	100.00	NA	95.83	NA	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	cassette	CPNE1	chr20	-	chr20:34219929-34220232;chr20:34219948-34220232	chr20:34219948-34220084,chr20:34219929-34220084;chr20:34220157-34220232		chr20:34220085-34220156			51.19	44.62	44.44	35.71	45.95	NA	93.02	96.55	94.59	88.24	92.59	94.44	92.45	91.67	92.86	90.00	92.00	91.67	53.85	41.30	53.85	48.28	42.00	52.94	0.00	63.04	58.11	71.43	81.58	78.26	39.47	44.44	44.44	57.78	39.58	43.37	49.23	57.11	7.88	0.614259	0.856028
N	alternative_acceptor	FAM219B	chr15	-	chr15:75192941-75194944;chr15:75192479-75194944	chr15:75194405-75194944		chr15:75192479-75192940;chr15:75192941-75194404	chr15:75192478-75192479;chr15:75192940-75192941		84.00	89.02	79.49	81.82	81.63	90.00	95.65	NA	NA	NA	96.15	NA	91.43	90.91	NA	NA	96.55	NA	88.89	88.24	84.62	92.86	93.75	90.00	92.86	NA	82.76	84.62	87.76	NA	73.33	83.33	90.24	94.74	82.86	87.50	90.84	86.12	-4.72	0.157019	0.660713
N	alternative_acceptor		chr19	+	chr19:47111846-47112122;chr19:47111846-47112069	chr19:47111846-47112102		chr19:47112070-47112102;chr19:47112103-47112122	chr19:47112102-47112103;chr19:47112122-47112123		99.29	99.52	89.44	99.53	99.74	99.44	100.00	100.00	97.65	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	99.84	98.48	98.52	99.31	99.74	98.92	99.74	98.58	93.48	99.40	99.75	98.90	98.79	94.77	100.00	100.00	99.54	98.81	99.92	99.04	-0.88	0.065646	0.584083
K	cassette	FDXR	chr17	-	chr17:72859369-72860269	chr17:72859369-72860017;chr17:72860190-72860269		chr17:72860018-72860189			100.00	96.46	92.86	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	96.20	90.00	86.30	NA	100.00	NA	100.00	100.00	97.37	NA	NA	NA	90.00	92.47	91.20	100.00	90.00	NA	98.23	95.00	-3.23	0.508718	0.789905
N	alternative_acceptor	BTN3A1	chr6	+	chr6:42987105-42988434	chr6:42987105-42988404		chr6:42988405-42988434	chr6:42988434-42988435		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AD	CHCHD5	chr2	+	chr2:113342496-113343550;chr2:113342227-113343550	chr2:113342064-113343550		chr2:113342064-113342226;chr2:113342227-113342495	chr2:113342063-113342064;chr2:113342226-113342227		16.67	2.17	15.38	0.00	7.41	0.00	0.00	NA	0.00	0.00	8.82	6.67	5.71	7.69	8.33	0.00	9.76	NA	11.11	16.67	6.45	NA	8.33	NA	0.00	NA	0.00	10.00	9.68	0.00	8.33	0.00	17.07	NA	0.00	0.00	3.94	12.50	8.56	0.131259	0.657607
K	intron_retention		chr19	-	chr19:12766694-12767384				chr19:12766693-12766694;chr19:12767384-12767385		2.80	4.67	6.56	1.54	3.65	0.00	0.74	0.54	0.34	0.73	0.99	0.00	1.09	0.81	1.32	0.70	1.39	0.29	4.11	2.36	2.84	2.20	3.06	1.17	0.00	0.65	3.81	1.83	2.41	0.38	2.04	4.94	5.10	3.70	8.91	1.60	2.60	1.43	-1.18	0.654041	1.000000
N	cassette	HM13	chr20	+	chr20:30149540-30156922;chr20:30149540-30155880	chr20:30149540-30154012;chr20:30154099-30156922,chr20:30154099-30155880		chr20:30154013-30154098			96.26	97.82	97.43	94.95	91.57	95.64	97.70	98.27	97.27	96.13	95.43	98.06	97.36	98.14	97.56	96.04	93.77	96.77	96.73	97.89	98.04	97.06	91.45	95.96	96.08	97.20	92.86	94.12	90.64	95.37	97.26	95.74	95.09	94.38	96.25	96.64	97.05	97.58	0.53	0.215682	0.709176
N	intron_retention		chr11	-	chr11:61732618-61732840				chr11:61732617-61732618;chr11:61732840-61732841		98.43	100.00	99.21	99.23	100.00	100.00	NA	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.82	98.41	100.00	100.00	100.00	100.00	97.18	99.64	100.00	100.00	100.00	98.15	98.27	97.13	100.00	98.93	99.15	100.00	98.29	-1.71	0.450373	1.000000
N	coord_cassette	NADK	chr1	-	chr1:1686138-1687941	chr1:1686138-1686812;chr1:1686916-1687696;chr1:1687783-1687941		chr1:1686813-1686915;chr1:1687697-1687782			100.00	86.96	96.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.19	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391893	0.647127
N	cassette	NISCH	chr3	+	chr3:52523695-52525367;chr3:52523695-52524720	chr3:52523695-52524090;chr3:52524248-52525367,chr3:52524248-52524720		chr3:52524091-52524247			82.89	80.77	82.54	NA	84.21	NA	100.00	NA	100.00	NA	95.83	NA	100.00	100.00	90.91	100.00	100.00	NA	100.00	90.32	73.33	NA	87.80	NA	72.00	87.50	83.33	NA	92.00	NA	100.00	78.79	93.75	85.00	89.58	87.50	96.88	90.32	-6.56	0.863676	0.951806
N	jcn_only_AA	MED25	chr19	+	chr19:50335415-50335564	chr19:50335415-50335534		chr19:50335535-50335564	chr19:50335564-50335565		3.70	0.00	0.00	NA	0.00	0.00	0.00	1.79	0.00	3.33	0.00	2.22	0.00	0.00	0.00	0.00	1.92	1.85	0.00	0.00	0.00	NA	0.00	7.14	0.00	1.30	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.65	0.119269	0.663989
K	alternative_acceptor	PLIN3	chr19	-	chr19:4839546-4844679	chr19:4839549-4844679		chr19:4839546-4839548	chr19:4839545-4839546		89.61	100.00	92.50	100.00	90.91	NA	93.85	89.62	94.12	95.38	91.67	89.13	91.18	89.53	93.02	92.19	89.71	95.24	NA	90.16	91.67	93.33	98.31	100.00	75.00	95.38	92.19	91.89	93.75	90.32	87.50	93.42	100.00	93.48	91.30	90.41	93.85	89.62	-4.23	0.734012	0.901562
K	cassette	MTCH2	chr11	-	chr11:47656287-47660250	chr11:47656287-47657096;chr11:47657124-47660250		chr11:47657097-47657123			86.67	83.33	85.96	89.47	88.00	84.62	94.31	94.29	93.02	93.26	93.39	93.65	92.48	89.80	92.98	94.57	94.07	93.75	81.82	83.33	88.89	88.52	89.38	89.66	NA	89.66	88.46	88.37	92.00	93.62	80.77	84.44	78.57	89.80	85.34	84.95	83.33	88.16	4.83	0.730496	0.905819
K	intron_retention		chr7	+	chr7:100470367-100470793				chr7:100470366-100470367;chr7:100470793-100470794		6.56	2.86	2.86	9.09	7.89	5.88	2.56	1.49	2.27	12.00	8.57	0.00	2.50	1.52	2.08	4.62	10.20	7.69	4.50	7.55	4.48	10.00	9.84	4.55	3.60	1.10	3.23	9.30	7.69	4.26	3.80	4.26	4.96	4.00	6.25	2.63	3.23	2.66	-0.57	0.391158	1.000000
N	jcn_only_AA		chr17	+	chr17:61684825-61685395	chr17:61684825-61685161		chr17:61685162-61685395	chr17:61685395-61685396		100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	UBE2B	chr5	+	chr5:133716500-133725915	chr5:133716500-133724042;chr5:133724105-133725915		chr5:133724043-133724104			97.62	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	97.53	100.00	100.00	97.22	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.25	97.87	100.00	100.00	100.00	100.00	100.00	98.81	-1.19	0.083541	0.641134
K	alternative_donor	PQBP1	chrX	+	chrX:48759662-48760008	chrX:48759795-48760008		chrX:48759662-48759794	chrX:48759661-48759662		96.88	95.37	97.62	97.01	95.74	100.00	100.00	100.00	100.00	95.24	100.00	88.89	100.00	100.00	98.11	92.31	95.24	100.00	97.25	96.55	96.77	96.97	94.64	89.29	98.65	100.00	96.00	97.73	96.72	97.87	96.55	91.38	96.49	100.00	90.00	97.44	97.95	98.44	0.49	0.738959	0.891105
N	alternative_acceptor	IFNAR2	chr21	+	chr21:34633033-34635116;chr21:34633033-34638316;chr21:34633033-34635097	chr21:34633033-34634865		chr21:34634866-34635097;chr21:34635098-34635116;chr21:34635117-34638316	chr21:34635097-34635098;chr21:34635116-34635117;chr21:34638316-34638317		43.75	96.30	27.03	100.00	96.08	97.06	37.78	39.13	28.46	29.17	35.00	34.48	54.55	37.23	30.00	54.79	34.31	41.89	100.00	33.33	91.49	56.10	58.11	33.33	100.00	29.76	34.62	70.21	69.39	78.65	50.00	48.53	96.77	62.75	43.66	45.28	96.53	38.18	-58.35	0.012087	0.475629
K	intron_retention	MYL5	chr4	+	chr4:672823-673702				chr4:672822-672823;chr4:673702-673703		3.70	6.90	5.56	3.45	0.00	3.03	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	4.41	14.29	3.45	0.00	12.50	5.26	8.57	18.75	6.00	10.00	7.14	4.35	3.85	6.78	4.17	20.00	16.67	17.07	5.66	9.07	3.42	0.790224	1.000000
K	alternative_donor	PARP10	chr8	-	chr8:145057234-145057479	chr8:145057234-145057334		chr8:145057335-145057479	chr8:145057479-145057480		94.89	98.04	95.48	97.44	100.00	96.67	100.00	98.83	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	95.98	95.36	86.36	94.12	94.20	94.29	97.41	97.10	100.00	100.00	98.32	86.83	89.23	93.18	98.04	94.74	94.24	96.31	96.69	0.38	0.664570	0.850309
K	jcn_only_AA	GMPR2	chr14	+	chr14:24705347-24706276	chr14:24705347-24706247		chr14:24706248-24706276	chr14:24706276-24706277		3.45	0.00	0.00	NA	0.00	NA	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	3.57	0.00	0.00	0.00	6.25	NA	0.00	NA	0.00	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.189304	0.663989
N	jcn_only_AD	FGD2	chr6	+	chr6:36993985-36995204;chr6:36993715-36995204;chr6:36994102-36995204	chr6:36995111-36995204		chr6:36993715-36993984;chr6:36993985-36994101;chr6:36994102-36995110	chr6:36993714-36993715;chr6:36993984-36993985;chr6:36994101-36994102		0.95	0.00	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	NA	NA	0.00	0.00	NA	0.00	NA	7.69	0.00	3.45	0.00	0.00	0.00	0.00	0.00	5.38	0.00	0.00	0.00	0.226533	0.657607
K	intron_retention		chr17	-	chr17:61781112-61781364				chr17:61781111-61781112;chr17:61781364-61781365		29.03	28.00	31.34	NA	42.55	NA	12.24	7.25	6.76	13.33	15.38	NA	9.52	3.23	7.25	7.14	15.22	NA	43.75	25.64	20.93	30.00	40.62	NA	50.00	21.05	37.93	33.33	45.71	17.65	23.68	36.07	42.86	28.00	33.33	23.81	35.43	22.37	-13.06	0.377390	1.000000
K	cassette	EMC4	chr15	+	chr15:34520048-34521953	chr15:34520048-34520637;chr15:34520791-34521953		chr15:34520638-34520790			75.56	81.25	76.79	86.36	86.05	88.89	80.85	82.14	88.37	88.00	84.21	91.30	85.11	68.97	81.25	85.37	90.62	80.95	84.21	82.05	75.86	88.00	82.76	77.78	88.89	81.08	84.91	83.33	86.67	85.29	80.00	82.46	90.32	85.71	88.64	75.47	84.66	80.54	-4.12	0.029194	0.426840
K	alternative_acceptor	ABCD4	chr14	-	chr14:74753233-74753403	chr14:74753270-74753403		chr14:74753233-74753269	chr14:74753232-74753233		33.33	48.24	35.29	26.67	38.24	16.67	18.92	14.29	28.57	16.67	24.00	0.00	15.79	17.65	33.33	16.67	20.00	7.14	41.27	23.81	20.37	NA	47.22	30.00	50.72	22.22	25.64	NA	34.38	21.05	32.50	34.78	40.85	31.25	30.43	31.82	41.06	23.02	-18.05	0.121373	0.607828
N	jcn_only_AD	ELOVL1	chr1	-	chr1:43830132-43830228;chr1:43830132-43830285;chr1:43830132-43830289	chr1:43830132-43830212		chr1:43830213-43830228;chr1:43830229-43830285;chr1:43830286-43830289	chr1:43830228-43830229;chr1:43830285-43830286;chr1:43830289-43830290		100.00	100.00	96.88	95.45	96.00	NA	93.70	100.00	96.04	100.00	90.62	100.00	91.03	96.47	100.00	94.44	88.99	88.46	100.00	100.00	95.18	96.43	93.04	100.00	100.00	100.00	100.00	96.77	100.00	100.00	95.08	93.53	86.84	97.98	98.36	100.00	96.85	100.00	3.15	0.222936	0.657607
K	cassette	SECTM1	chr17	-	chr17:80285169-80291575	chr17:80285169-80287134;chr17:80287343-80291575		chr17:80287135-80287342			0.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.22	0.50	0.00	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.443077	0.746613
N	jcn_only_AA	NPC1	chr18	-	chr18:21099968-21113318;chr18:21103201-21113318;chr18:21109319-21113318;chr18:21102871-21113318;chr18:21112249-21113318;chr18:21109692-21113318	chr18:21086607-21113318		chr18:21086607-21099967;chr18:21099968-21102870;chr18:21102871-21103200;chr18:21103201-21109318;chr18:21109319-21109691;chr18:21109692-21112248	chr18:21086606-21086607;chr18:21099967-21099968;chr18:21102870-21102871;chr18:21103200-21103201;chr18:21109318-21109319;chr18:21109691-21109692		3.36	0.00	3.33	8.82	3.28	16.67	1.56	0.00	0.00	1.56	1.44	2.63	0.00	4.62	0.00	0.00	4.41	1.82	0.00	1.55	4.55	0.00	1.95	0.71	NA	3.37	3.51	2.31	3.09	4.65	5.41	0.00	7.69	1.80	0.00	1.74	0.00	3.37	3.37	0.504468	0.757893
K	intron_retention		chr9	+	chr9:115923979-115925028				chr9:115923978-115923979;chr9:115925028-115925029		10.29	43.75	10.55	NA	13.51	NA	3.03	1.15	0.51	1.20	1.96	0.91	1.11	0.58	0.80	0.64	0.00	0.00	NA	4.52	10.26	10.71	15.58	6.29	NA	4.31	7.84	4.88	8.11	0.00	6.54	6.50	17.65	11.01	12.50	5.75	10.34	4.41	-5.93	0.720948	1.000000
K	cassette	RILP	chr17	-	chr17:1549914-1551128	chr17:1549914-1550199;chr17:1550284-1551128		chr17:1550200-1550283			89.80	85.26	88.37	92.59	84.31	86.84	96.15	94.12	93.94	92.31	94.83	95.56	100.00	89.58	87.50	96.61	95.56	94.87	86.96	86.84	92.42	85.71	80.00	84.21	87.50	95.00	82.93	91.43	88.16	89.04	96.00	86.05	87.93	87.50	88.00	87.95	87.72	91.96	4.25	0.670988	0.880019
N	cassette	TRPV2	chr17	+	chr17:16335165-16338203;chr17:16335615-16340102;chr17:16332297-16340102;chr17:16332297-16338203;chr17:16335165-16340102;chr17:16335615-16338203	chr17:16335165-16336887,chr17:16332297-16336887,chr17:16335615-16336887;chr17:16337013-16340102,chr17:16337013-16338203		chr17:16336888-16337012			81.93	93.81	80.00	80.85	82.35	87.50	95.35	94.21	95.92	97.22	98.10	96.15	90.83	95.06	92.00	98.61	97.47	96.67	84.85	84.00	90.91	91.43	81.08	88.89	87.10	77.67	80.00	91.67	80.00	93.02	72.55	83.33	83.46	83.33	74.32	84.21	88.97	82.97	-6.00	0.265547	0.709176
K	jcn_only_AA	HSPA8	chr11	-	chr11:122930920-122931300	chr11:122930977-122931300		chr11:122930920-122930976	chr11:122930919-122930920		97.94	100.00	97.91	96.55	99.00	NA	97.80	97.88	98.48	98.78	98.19	97.87	97.92	97.66	98.30	98.08	97.87	97.48	90.32	96.38	95.45	100.00	98.61	97.81	100.00	97.33	97.67	97.70	97.92	96.88	97.67	96.93	97.30	99.05	99.40	99.15	97.86	97.66	-0.20	0.870342	0.950085
K	intron_retention	SRSF3	chr6	+	chr6:36566761-36568928				chr6:36566760-36566761;chr6:36568928-36568929		13.85	8.82	9.89	13.95	4.23	8.82	1.14	4.55	3.16	0.27	1.71	1.13	1.59	4.26	4.55	0.88	0.95	0.96	8.11	11.86	5.08	8.60	5.16	8.51	5.56	15.62	6.59	3.54	1.54	2.27	27.03	21.67	9.09	7.02	6.47	9.82	6.83	12.86	6.02	0.494815	1.000000
K	intron_retention	RASSF4	chr10	+	chr10:45479562-45480260				chr10:45479561-45479562;chr10:45480260-45480261		4.21	0.00	4.82	0.00	8.33	NA	0.00	0.40	0.74	0.45	0.00	0.68	1.55	0.50	0.49	1.64	0.81	3.06	0.00	0.66	0.98	0.00	2.08	4.35	0.00	0.61	3.15	3.12	4.35	1.88	0.00	5.15	13.33	2.00	4.69	4.09	0.00	0.55	0.55	0.805569	1.000000
N	jcn_only_AD	UBALD2	chr17	+	chr17:74261620-74261987;chr17:74261485-74261987	chr17:74261707-74261987		chr17:74261485-74261619;chr17:74261620-74261706	chr17:74261484-74261485;chr17:74261619-74261620		98.25	93.55	98.57	100.00	100.00	95.45	100.00	100.00	96.74	98.02	98.48	97.48	97.89	98.35	98.44	97.92	100.00	99.24	95.12	97.56	98.85	100.00	98.67	95.83	NA	100.00	100.00	100.00	98.94	97.26	97.37	100.00	95.83	100.00	100.00	100.00	95.83	98.30	2.47	0.139460	0.657607
N	jcn_only_AD	ADAP2	chr17	+	chr17:29249857-29249957;chr17:29249827-29249957	chr17:29249127-29249957		chr17:29249127-29249826;chr17:29249827-29249856	chr17:29249126-29249127;chr17:29249826-29249827		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.72	98.44	100.00	97.87	97.98	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	92.86	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.888672	0.943380
K	jcn_only_AA	SEC13	chr3	-	chr3:10343059-10345709;chr3:10335021-10345709	chr3:10342832-10345709		chr3:10335021-10342831;chr3:10342832-10343058	chr3:10335020-10335021;chr3:10342831-10342832		8.82	17.45	6.56	20.29	11.83	29.55	24.58	15.38	5.13	30.00	22.08	29.21	17.80	11.43	12.82	21.05	21.60	26.73	22.12	8.11	19.20	19.30	18.00	12.07	32.00	0.00	8.47	26.00	18.75	26.51	18.92	9.21	19.71	16.47	18.82	21.15	20.91	10.12	-10.79	0.007115	0.450187
N	alternative_acceptor	ESRRA	chr11	+	chr11:64074977-64081422	chr11:64074977-64081325		chr11:64081326-64081422	chr11:64081422-64081423		12.50	21.21	9.09	NA	14.29	NA	0.00	0.00	7.69	0.00	0.00	NA	2.13	0.00	3.03	4.65	3.23	NA	13.33	NA	9.09	7.14	16.00	NA	NA	9.52	8.70	0.00	9.52	NA	16.67	5.88	NA	9.52	12.50	NA	7.73	9.52	1.79	0.820130	0.938511
N	alternative_last_exon	ZFAS1	chr20	+	chr20:47895746-47896474;chr20:47895746-47911939;chr20:47895746-47905581	chr20:47895746-47897021	chr20:47911940-47912275;chr20:47905582-47905797	chr20:47897022-47897718			72.92	56.25	69.81	64.06	63.44	55.22	69.39	82.50	86.21	80.95	79.66	75.56	82.35	78.79	80.72	80.95	86.67	77.50	51.85	68.29	57.84	81.58	68.63	72.41	59.60	81.82	70.69	79.49	77.36	76.79	64.41	73.42	48.82	73.21	61.90	71.43	57.92	75.86	17.93	0.053437	0.242424
K	jcn_only_AD	NOP56	chr20	+	chr20:2636681-2637046	chr20:2636861-2637046		chr20:2636681-2636860	chr20:2636680-2636681		8.00	16.67	12.50	12.50	12.50	0.00	15.22	0.00	6.82	8.13	8.57	11.11	23.53	0.00	3.85	11.46	15.62	20.59	26.92	0.00	12.12	5.66	19.57	7.89	NA	0.00	11.43	11.76	10.87	2.38	13.64	9.68	16.67	6.67	18.75	8.57	16.67	0.00	-16.67	0.000877	0.080338
N	alternative_donor	GNB1	chr1	-	chr1:1718493-1718760;chr1:1718493-1718929	chr1:1718493-1718764		chr1:1718761-1718764;chr1:1718765-1718929	chr1:1718764-1718765;chr1:1718929-1718930		7.48	5.93	8.45	11.39	7.37	8.00	6.84	9.33	9.17	10.00	8.43	9.02	8.11	7.74	9.92	10.39	9.91	8.92	7.23	7.94	8.77	9.09	9.84	10.19	4.82	8.90	9.45	7.53	11.58	10.08	7.63	8.62	5.45	9.30	6.92	8.85	6.38	7.84	1.46	0.015589	0.256447
K	cassette	DPP3	chr11	+	chr11:66262740-66263100	chr11:66262740-66262835;chr11:66262961-66263100		chr11:66262836-66262960			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	NA	100.00	100.00	100.00	100.00	NA	94.74	96.30	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	TMEM138	chr11	+	chr11:61133689-61135394	chr11:61134998-61135394		chr11:61133689-61134997	chr11:61133688-61133689		7.27	9.38	8.70	0.00	1.15	0.00	0.91	1.27	1.64	0.93	1.09	0.00	2.27	1.61	3.28	1.28	2.02	0.00	4.76	7.55	2.27	6.90	3.97	6.82	8.33	7.14	9.62	2.97	3.37	2.44	5.04	9.64	5.00	7.04	6.74	8.45	4.88	6.09	1.21	0.944271	0.984606
K	alternative_acceptor	MKNK2	chr19	-	chr19:2037829-2040132	chr19:2039856-2040132		chr19:2037829-2039855	chr19:2037828-2037829		63.22	38.71	69.29	36.59	42.73	27.78	81.44	86.79	87.91	85.00	85.71	76.47	81.40	93.02	87.01	76.47	90.48	NA	46.94	78.38	47.48	74.29	76.03	76.92	25.00	78.43	65.45	71.43	48.21	62.50	61.94	62.71	24.54	71.21	62.50	69.01	42.83	78.41	35.58	0.052653	0.570243
N	jcn_only_AA	FBXL15	chr10	+	chr10:104181265-104181870;chr10:104181265-104181543	chr10:104181265-104181843		chr10:104181544-104181843;chr10:104181844-104181870	chr10:104181843-104181844;chr10:104181870-104181871		0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.72	10.00	10.00	NA	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	CSF3R	chr1	-	chr1:36933564-36933675				chr1:36933563-36933564;chr1:36933675-36933676		0.00	12.50	10.71	NA	4.55	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.23	0.00	0.00	5.00	3.33	0.00	1.59	1.69	0.00	0.00	NA	0.00	2.70	3.17	0.00	0.00	0.00	0.668928	1.000000
K	jcn_only_AA	FAM89B	chr11	+	chr11:65340432-65340872;chr11:65340432-65340833	chr11:65340432-65340823		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		28.57	18.18	24.00	NA	22.73	NA	29.79	21.43	19.23	40.00	24.32	33.33	30.77	20.69	33.33	28.00	25.58	25.00	36.84	32.14	28.30	NA	42.86	NA	56.25	44.00	33.33	30.77	33.33	18.18	18.18	33.33	29.17	35.00	29.73	33.33	30.28	25.00	-5.28	0.379494	0.663989
N	alternative_acceptor		chr19	+	chr19:11169566-11170455	chr19:11169566-11170428		chr19:11170429-11170455	chr19:11170455-11170456		100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	intron_retention	BCAT2	chr19	-	chr19:49298722-49299684				chr19:49298721-49298722;chr19:49299684-49299685		0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	3.49	0.00	0.00	NA	3.45	NA	10.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.768801	1.000000
K	intron_retention		chrX	+	chrX:48546486-48546688				chrX:48546485-48546486;chrX:48546688-48546689		2.83	3.89	6.13	0.00	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.83	0.00	5.26	1.39	2.94	0.00	2.22	0.00	0.00	4.92	5.23	0.00	2.20	0.00	3.39	4.80	2.90	2.86	4.76	0.00	1.83	2.11	0.28	0.719007	1.000000
K	intron_retention		chr19	-	chr19:12790737-12790974				chr19:12790736-12790737;chr19:12790974-12790975		11.54	12.50	17.95	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	6.67	7.14	8.33	NA	15.38	10.00	NA	0.00	6.45	NA	0.00	0.00	15.79	17.24	16.67	NA	13.33	0.00	6.67	3.57	-3.10	0.735611	1.000000
N	jcn_only_AA	XPC	chr3	-	chr3:14193890-14197834;chr3:14193917-14197834	chr3:14195534-14197834		chr3:14193890-14193916;chr3:14193917-14195533	chr3:14193889-14193890;chr3:14193916-14193917		14.29	0.00	4.17	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	6.25	5.63	0.00	0.00	NA	9.38	7.41	0.00	8.57	6.12	10.00	0.00	3.12	3.12	0.098826	0.663989
K	intron_retention	SRSF7	chr2	-	chr2:38972330-38973835				chr2:38972329-38972330;chr2:38973835-38973836		15.79	22.58	15.38	NA	23.81	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	NA	NA	28.57	33.33	NA	14.29	24.14	NA	14.29	20.00	0.00	NA	16.13	NA	52.38	35.00	44.44	27.27	25.00	NA	25.57	26.66	1.09	0.986095	1.000000
K	intron_retention		chr22	-	chr22:50965713-50966016				chr22:50965712-50965713;chr22:50966016-50966017		23.52	28.32	36.65	35.62	32.16	22.33	2.11	2.90	4.69	5.18	2.59	3.62	2.12	4.53	6.99	6.22	3.84	2.72	16.36	22.23	12.40	36.89	31.25	32.69	16.11	17.52	25.90	21.72	18.60	18.59	23.64	31.90	21.76	37.85	34.24	30.31	16.23	19.88	3.64	0.943510	1.000000
K	jcn_only_AA	PSMD9	chr12	+	chr12:122341014-122353761;chr12:122341014-122348847	chr12:122341014-122353764					0.00	4.92	4.65	4.11	1.82	3.90	4.08	0.00	3.12	4.55	7.58	3.77	7.58	7.69	3.19	8.43	7.25	9.76	5.56	0.00	5.33	3.12	5.75	8.16	6.35	0.00	4.55	9.52	4.60	7.84	0.00	0.00	5.19	6.67	1.67	3.23	5.38	0.00	-5.38	0.017889	0.537091
N	alternative_first_exon	GBP2	chr1	-	chr1:89572736-89573693;chr1:89572736-89591545;chr1:89572736-89573705	chr1:89572736-89575359	chr1:89591546-89591797;chr1:89573706-89573974	chr1:89575360-89575553			0.00	0.00	0.00	0.00	0.00	0.00	7.14	3.40	0.00	6.98	0.00	5.93	0.00	2.33	1.53	2.38	0.00	4.59	0.00	0.00	0.00	0.00	0.00	0.85	0.00	1.03	0.00	1.45	0.00	0.42	1.02	1.15	0.00	0.00	1.82	1.04	0.00	1.02	1.02	0.937376	0.960353
N	jcn_only_AD	DENND4B,SFPQ	chr1	-	chr1:35643638-35652601;chr1:35643638-35652547;chr1:35643638-35646735	chr1:35643638-35644265		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		0.00	0.91	2.38	5.80	6.25	3.20	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.76	0.00	NA	2.61	0.00	7.27	5.41	8.00	7.50	2.86	0.00	0.00	5.26	9.09	6.00	0.00	1.45	1.95	7.89	9.38	4.26	1.43	0.00	-1.43	0.043879	0.497155
N	alternative_donor	SIPA1	chr11	+	chr11:65410075-65412425;chr11:65410111-65412425	chr11:65412298-65412425		chr11:65410075-65410110;chr11:65410111-65412297	chr11:65410074-65410075;chr11:65410110-65410111		0.00	6.06	2.04	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	4.76	3.70	0.00	NA	0.00	NA	0.00	2.78	8.33	NA	0.00	0.00	4.76	0.00	-4.76	0.128957	0.540946
N	jcn_only_AD	NSMCE2	chr8	+	chr8:126374404-126379009;chr8:126370101-126379009	chr8:126370061-126379009		chr8:126370061-126370100;chr8:126370101-126374403	chr8:126370060-126370061;chr8:126370100-126370101		100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	96.43	100.00	100.00	0.00	0.623698	0.814721
K	alternative_acceptor	CXXC1	chr18	-	chr18:47809695-47809884	chr18:47809732-47809884		chr18:47809695-47809731	chr18:47809694-47809695		90.62	94.29	91.67	90.00	100.00	90.00	NA	NA	NA	NA	100.00	NA	83.33	NA	100.00	NA	100.00	NA	93.33	100.00	93.55	NA	93.55	NA	88.24	100.00	100.00	NA	95.00	NA	89.29	95.12	92.31	91.67	94.12	100.00	92.31	95.31	3.00	0.238470	0.692777
K	jcn_only_AA	SNRNP70	chr19	+	chr19:49610970-49611078	chr19:49610970-49611051		chr19:49611052-49611078	chr19:49611078-49611079		89.27	83.19	88.17	87.64	83.38	86.44	68.27	82.05	70.51	75.86	69.44	72.34	69.57	67.27	73.04	71.20	73.85	78.69	83.09	87.76	81.61	88.96	84.23	84.87	81.55	79.80	83.50	79.35	77.11	80.45	87.79	86.78	85.14	91.28	88.65	90.12	82.32	84.91	2.59	0.417037	0.689626
K	cassette	MAZ	chr16	+	chr16:29820063-29821397	chr16:29820063-29820860;chr16:29821086-29821397		chr16:29820861-29821085			27.78	27.87	25.00	NA	21.43	NA	34.51	27.27	36.00	29.51	34.01	26.67	39.83	30.00	27.27	32.00	31.88	NA	23.81	25.00	20.00	12.90	18.80	20.00	25.81	NA	21.74	27.27	22.00	NA	NA	41.18	31.58	21.88	20.31	35.29	29.73	27.52	-2.20	0.287758	0.709176
N	alternative_acceptor		chr19	+	chr19:42406507-42406735	chr19:42406507-42406682		chr19:42406683-42406735	chr19:42406735-42406736		95.00	88.37	85.11	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.22	100.00	100.00	NA	78.57	91.43	93.75	100.00	97.44	90.91	100.00	94.44	90.48	100.00	100.00	100.00	82.61	82.93	81.25	92.31	94.59	94.12	94.19	94.72	0.53	0.613222	0.853341
N	cassette	GAS7	chr17	-	chr17:9862573-9923093;chr17:9862573-9885120	chr17:9862573-9872993;chr17:9873080-9923093,chr17:9873080-9885120		chr17:9872994-9873079			88.24	91.89	75.51	NA	100.00	NA	94.74	94.05	94.44	89.58	94.95	96.97	93.25	87.62	100.00	92.56	92.89	93.88	88.24	89.09	NA	94.44	95.52	92.59	100.00	88.14	88.89	90.00	93.02	85.29	90.74	85.29	88.24	85.33	92.17	88.79	92.57	88.66	-3.91	0.174703	0.709176
K	intron_retention	WDR45	chrX	-	chrX:48932572-48932794				chrX:48932571-48932572;chrX:48932794-48932795		5.77	9.64	8.00	11.36	6.17	5.10	0.00	0.00	0.00	0.00	0.00	0.00	6.67	6.67	4.35	0.00	0.00	NA	6.78	7.50	6.67	15.00	11.36	17.39	14.08	16.22	12.77	0.00	7.69	3.70	8.06	10.45	10.39	0.00	12.12	10.00	8.21	7.08	-1.13	0.980049	1.000000
K	cassette	MYO9B	chr19	+	chr19:17320519-17321523	chr19:17320519-17321141;chr19:17321190-17321523		chr19:17321142-17321189			0.00	0.00	0.00	0.00	0.00	1.05	1.95	1.83	0.00	2.01	1.75	3.88	1.87	0.00	0.71	3.81	4.09	9.09	0.00	0.00	0.00	0.00	0.52	0.00	0.00	0.93	0.00	1.16	0.38	1.41	0.65	0.00	0.00	0.67	0.00	0.54	0.00	0.33	0.33	0.894682	0.967641
K	jcn_only_AA	CERS2	chr1	-	chr1:150941608-150947094;chr1:150940989-150947094	chr1:150941568-150947094					95.08	100.00	95.08	NA	NA	NA	96.30	91.09	93.49	95.80	96.07	95.24	97.07	94.74	94.57	97.24	95.73	97.53	NA	95.65	NA	95.83	95.92	97.37	100.00	96.00	92.77	97.22	93.88	89.47	90.91	93.85	NA	94.44	95.83	91.89	98.53	94.91	-3.62	0.012475	0.486024
K	jcn_only_AD	TANGO2	chr22	+	chr22:20049230-20050860;chr22:20049207-20050860	chr22:20049205-20050860		chr22:20049205-20049206;chr22:20049207-20049229	chr22:20049204-20049205;chr22:20049206-20049207		0.00	31.25	0.00	NA	NA	NA	8.00	14.29	21.74	10.00	15.22	NA	11.67	11.11	15.38	5.00	5.45	0.00	NA	NA	NA	NA	4.76	NA	50.00	11.11	NA	NA	22.22	NA	9.09	0.00	NA	0.00	0.00	NA	21.46	11.11	-10.35	0.195563	0.657607
K	jcn_only_AA	ADSL,EWSR1	chr22	+	chr22:29668421-29669729;chr22:29668421-29674119	chr22:29668421-29669726					2.59	0.00	2.30	NA	4.00	NA	2.83	4.71	3.65	5.73	1.83	4.97	2.48	6.02	2.68	4.18	3.62	5.33	NA	4.72	5.00	1.45	2.50	2.14	0.00	3.05	1.75	3.08	2.56	6.67	5.45	4.50	NA	3.36	0.79	3.06	1.24	4.71	3.47	0.017309	0.537091
N	coord_cassette	KYNU	chr2	+	chr2:143743591-143797996	chr2:143743591-143787195;chr2:143787249-143790804;chr2:143790891-143797996		chr2:143787196-143787248;chr2:143790805-143790890			98.98	100.00	98.45	100.00	100.00	100.00	100.00	99.52	100.00	100.00	100.00	100.00	100.00	100.00	99.59	100.00	100.00	100.00	100.00	95.42	98.81	97.77	100.00	98.54	100.00	100.00	99.13	100.00	98.48	99.64	97.22	96.94	90.32	100.00	100.00	100.00	100.00	99.25	-0.75	0.940905	0.972993
K	intron_retention		chr16	+	chr16:30094889-30094975				chr16:30094888-30094889;chr16:30094975-30094976		4.95	2.68	5.82	2.53	1.77	3.51	0.00	0.68	0.00	0.00	0.51	1.04	0.00	0.00	0.00	0.00	0.49	0.00	2.30	7.04	3.81	2.26	2.08	2.50	1.99	2.48	2.50	2.86	1.36	1.28	11.40	7.23	4.24	2.27	2.78	2.45	2.15	3.71	1.57	0.419974	1.000000
K	intron_retention		chr11	+	chr11:47289578-47289811				chr11:47289577-47289578;chr11:47289811-47289812		11.06	7.69	11.76	6.93	10.69	7.53	1.72	2.50	2.72	0.64	1.11	0.00	2.56	2.54	5.30	1.12	2.27	0.00	13.29	10.26	5.60	8.42	13.96	5.56	10.42	9.58	10.54	4.60	8.03	8.27	9.47	9.77	8.15	7.37	6.82	5.83	7.92	9.53	1.61	0.726768	1.000000
N	alternative_donor		chr1	-	chr1:156233362-156234104;chr1:156233362-156236075	chr1:156233362-156235571		chr1:156234105-156235571;chr1:156235572-156236075	chr1:156235571-156235572;chr1:156236075-156236076		95.00	95.83	98.36	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	NA	100.00	NA	100.00	100.00	95.24	94.12	100.00	98.31	100.00	100.00	100.00	100.00	100.00	NA	97.62	100.00	97.67	97.91	100.00	2.09	0.371998	0.650093
N	alternative_donor	GRAMD1A	chr19	+	chr19:35501560-35502377;chr19:35501284-35502377	chr19:35501530-35502377		chr19:35501284-35501529;chr19:35501530-35501559	chr19:35501283-35501284;chr19:35501529-35501530		3.87	33.33	2.31	19.12	41.18	45.45	4.26	1.36	0.27	1.21	5.26	0.28	4.55	0.65	0.82	0.65	6.56	0.71	40.00	3.21	10.26	3.57	8.70	1.00	27.78	1.08	1.03	1.85	10.53	3.63	1.55	2.30	36.84	2.94	4.29	1.11	30.55	1.46	-29.10	0.018409	0.264981
K	alternative_last_exon	PML	chr15	+	chr15:74326872-74327450,chr15:74326872-74327483,chr15:74326872-74327521;chr15:74326872-74335329	chr15:74326872-74327512,chr15:74326872-74327472	chr15:74335330-74335679	chr15:74327513-74327931			64.55	42.42	49.02	48.39	44.44	18.25	57.50	66.46	60.08	75.70	78.57	79.87	57.14	69.87	64.52	67.88	75.56	80.41	20.83	60.00	32.65	69.44	63.16	72.44	12.82	58.39	47.73	69.08	61.90	68.05	55.35	52.69	20.00	61.39	63.64	71.14	31.62	62.27	30.65	0.018526	0.188658
N	cassette	MXD3,RAB24	chr5	-	chr5:176729498-176730009	chr5:176729498-176729577;chr5:176729646-176730009		chr5:176729578-176729645			100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	97.56	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	ARRDC1	chr9	+	chr9:140507459-140507874;chr9:140507459-140507911	chr9:140507459-140507864		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		0.00	17.24	30.77	NA	18.18	NA	6.06	6.25	8.33	NA	8.00	NA	6.45	3.33	4.17	NA	0.00	NA	NA	NA	NA	NA	25.00	NA	NA	10.00	0.00	NA	15.79	NA	NA	27.27	25.00	41.67	9.09	27.27	11.84	4.79	-7.05	0.152282	0.663989
N	intron_retention		chr11	+	chr11:60161387-60162418				chr11:60161386-60161387;chr11:60162418-60162419		99.63	100.00	100.00	89.47	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	alternative_acceptor	SLC25A3	chr12	+	chr12:98987519-98987756	chr12:98987519-98987752		chr12:98987753-98987756	chr12:98987756-98987757		100.00	100.00	100.00	NA	92.59	NA	92.44	97.14	93.48	92.44	91.78	91.67	93.52	91.18	91.80	92.68	90.51	93.26	NA	96.43	100.00	93.18	93.42	95.74	NA	100.00	97.30	93.94	94.44	100.00	84.00	93.33	90.91	94.74	98.08	98.21	92.98	96.78	3.81	0.863121	0.954648
K	intron_retention	HNRNPH1	chr5	-	chr5:179043220-179043869				chr5:179043219-179043220;chr5:179043869-179043870		16.13	2.82	13.71	5.77	6.59	6.67	0.00	2.50	1.61	1.78	0.64	1.20	2.33	2.08	3.96	1.59	1.56	0.00	8.00	9.23	7.14	10.79	10.98	9.32	28.00	11.36	7.01	3.73	7.50	6.80	14.29	19.51	8.57	9.68	12.30	12.95	5.41	10.29	4.88	0.831917	1.000000
K	intron_retention	GLTSCR2	chr19	+	chr19:48259862-48259944				chr19:48259861-48259862;chr19:48259944-48259945		0.00	0.13	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.56	0.00	1.06	0.00	0.56	0.00	0.13	0.00	0.00	0.00	0.00	0.00	7.14	0.63	1.26	0.00	1.77	0.00	0.13	0.00	-0.13	0.761966	1.000000
K	intron_retention		chr14	-	chr14:23533698-23535174				chr14:23533697-23533698;chr14:23535174-23535175		5.49	5.66	5.60	NA	3.12	NA	0.00	2.13	2.27	0.00	1.75	0.00	0.00	2.22	4.00	0.00	1.72	4.35	0.00	6.02	4.35	6.06	7.87	4.00	0.00	8.54	6.10	8.33	8.33	11.11	2.38	4.07	0.00	6.00	4.82	9.59	0.00	3.94	3.94	0.181678	1.000000
K	intron_retention	SETDB1	chr1	+	chr1:150935196-150935449				chr1:150935195-150935196;chr1:150935449-150935450		4.76	0.00	8.82	NA	NA	NA	0.00	0.00	0.00	5.00	0.00	0.00	3.85	5.88	3.57	7.14	3.85	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	3.57	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.999844	1.000000
N	jcn_only_AA	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4095045-4095385;chr19:4094602-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4094497-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		96.72	97.47	100.00	93.94	98.13	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.94	98.62	92.73	100.00	100.00	97.56	100.00	100.00	98.57	100.00	100.00	100.00	100.00	97.96	95.65	97.86	94.59	98.51	91.57	99.31	98.26	-1.05	0.309378	0.663989
N	alternative_acceptor	RECQL	chr12	-	chr12:21623281-21623902	chr12:21623819-21623902		chr12:21623281-21623818	chr12:21623280-21623281		29.17	30.00	34.69	26.67	25.93	7.69	15.22	23.68	27.50	26.09	20.43	13.33	12.96	17.86	19.44	17.14	16.05	8.51	14.29	26.32	15.62	27.59	22.22	16.67	5.26	18.75	41.67	20.00	21.62	11.76	20.69	15.38	14.29	21.74	16.98	14.29	14.29	22.19	7.90	0.085045	0.585944
N	intron_retention		chr7	-	chr7:26230081-26230675				chr7:26230080-26230081;chr7:26230675-26230676		72.29	55.06	72.38	73.24	61.45	58.33	NA	68.42	54.55	NA	NA	NA	71.43	73.68	84.62	100.00	NA	NA	66.67	71.64	65.71	71.19	71.23	75.36	67.44	77.91	83.52	81.63	83.02	80.33	68.54	73.77	68.83	83.33	85.14	76.36	67.44	71.97	4.53	0.275079	1.000000
N	intron_retention		chr12	-	chr12:124106059-124106254				chr12:124106058-124106059;chr12:124106254-124106255		100.00	100.00	100.00	93.75	97.50	NA	94.74	100.00	95.24	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.33	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention	SNRPD3	chr22	+	chr22:24964006-24967985				chr22:24964005-24964006;chr22:24967985-24967986		98.11	96.24	92.96	97.06	97.39	97.32	94.12	95.65	96.08	92.68	96.33	89.47	96.00	92.59	96.61	96.00	98.35	96.08	97.78	95.12	94.07	85.37	95.16	83.33	100.00	90.32	92.73	97.56	94.03	92.86	93.62	92.54	94.67	94.83	96.88	90.91	96.12	94.37	-1.75	0.470096	1.000000
K	intron_retention		chr14	-	chr14:23245146-23245403				chr14:23245145-23245146;chr14:23245403-23245404		2.93	0.00	5.09	0.00	4.88	NA	0.00	0.00	0.00	0.00	1.33	0.00	0.69	0.66	0.75	0.00	0.00	0.00	5.26	2.55	1.72	1.59	2.68	1.20	NA	2.61	2.75	1.41	3.09	1.25	4.27	2.86	0.00	1.30	5.50	1.39	0.00	2.58	2.58	0.933295	1.000000
K	intron_retention	SDS	chr12	-	chr12:113835198-113836319				chr12:113835197-113835198;chr12:113836319-113836320		3.15	11.11	3.37	8.33	3.06	NA	0.00	0.11	0.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.11	2.27	1.44	4.26	0.99	7.14	22.22	1.15	1.53	2.50	0.78	3.23	1.88	2.62	12.70	1.32	1.04	2.78	11.11	1.51	-9.59	0.915402	1.000000
N	jcn_only_AA	UBE2L3	chr22	+	chr22:21965333-21975803	chr22:21965333-21968845		chr22:21968846-21975803	chr22:21975803-21975804		1.75	4.72	2.99	4.95	2.80	4.43	0.00	2.42	0.78	3.23	1.68	3.83	0.00	2.63	1.30	4.47	0.00	5.70	0.00	2.22	0.00	3.60	2.30	6.06	0.00	2.43	1.60	0.64	1.58	3.51	3.78	1.05	1.20	4.65	0.00	3.79	0.00	2.42	2.42	0.105280	0.663989
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299154-23299261;chr14:23299158-23299261	chr14:23299150-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		85.71	85.45	76.32	100.00	91.18	96.15	100.00	NA	NA	100.00	100.00	NA	100.00	NA	83.33	100.00	93.55	NA	83.72	82.35	90.24	100.00	96.00	NA	57.58	100.00	100.00	NA	78.95	NA	100.00	78.12	87.76	100.00	100.00	76.92	86.61	92.85	6.25	0.449325	0.706163
K	intron_retention	HMHA1	chr19	+	chr19:1080118-1080253				chr19:1080117-1080118;chr19:1080253-1080254		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.502380	1.000000
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075083-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075434-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		0.00	5.77	0.00	NA	2.94	20.00	0.00	0.00	0.00	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	2.63	0.00	2.22	0.00	9.52	0.00	0.00	0.00	0.00	0.00	3.77	0.00	6.67	0.00	0.00	0.00	6.22	0.00	-6.22	0.047764	0.570243
K	cassette	RRBP1	chr20	-	chr20:17641174-17662672	chr20:17641174-17660643;chr20:17660721-17662672		chr20:17660644-17660720			21.05	36.36	32.14	NA	NA	NA	37.29	43.65	34.72	43.75	43.75	45.61	30.65	34.06	43.55	34.00	39.53	33.33	NA	33.33	NA	NA	35.71	31.82	25.00	32.86	28.00	35.71	NA	33.33	NA	54.55	NA	50.00	33.33	34.00	33.50	33.33	-0.17	0.888712	0.966777
N	jcn_only_AD	LSM6	chr4	+	chr4:147097496-147104063;chr4:147097590-147104063;chr4:147097014-147104063	chr4:147096964-147104063		chr4:147096964-147097013;chr4:147097014-147097495;chr4:147097496-147097589	chr4:147096963-147096964;chr4:147097013-147097014;chr4:147097495-147097496		100.00	100.00	95.95	100.00	100.00	NA	100.00	100.00	90.91	95.35	92.16	100.00	92.00	100.00	94.12	95.56	94.44	100.00	100.00	100.00	93.22	100.00	96.08	100.00	100.00	100.00	98.08	96.77	94.12	100.00	100.00	97.06	100.00	100.00	94.74	94.29	100.00	100.00	0.00	0.363217	0.657607
K	alternative_donor	EMC4	chr15	+	chr15:34517852-34519893	chr15:34517860-34519893		chr15:34517852-34517859	chr15:34517851-34517852		0.00	5.71	1.19	0.00	2.17	7.14	0.00	2.17	1.23	1.82	2.30	1.41	0.99	0.00	2.47	2.67	1.18	0.00	0.00	0.00	3.92	4.35	1.10	0.00	NA	2.08	1.22	0.00	2.86	1.69	2.33	3.23	0.00	1.33	1.64	2.41	0.00	1.04	1.04	0.848178	0.958191
N	jcn_only_AA	EDEM2	chr20	-	chr20:33703762-33706400;chr20:33703737-33706400	chr20:33705657-33706400		chr20:33703737-33703761;chr20:33703762-33705656	chr20:33703736-33703737;chr20:33703761-33703762		4.49	0.00	3.66	5.00	2.78	0.00	0.00	4.41	4.26	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	5.45	5.43	1.94	0.00	3.37	0.00	0.00	4.17	0.00	0.00	0.00	0.00	3.09	2.88	2.41	0.00	3.70	0.00	0.00	4.29	4.29	0.087478	0.663989
K	intron_retention	ULK1	chr12	+	chr12:132405781-132405850				chr12:132405780-132405781;chr12:132405850-132405851		16.13	0.00	11.90	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	9.52	NA	0.00	NA	NA	NA	NA	9.09	9.09	NA	10.00	NA	NA	5.88	0.00	NA	NA	NA	31.58	11.63	0.00	9.09	NA	4.55	0.00	9.09	9.09	0.520002	1.000000
N	cassette	HM13	chr20	+	chr20:30154099-30156922;chr20:30149540-30156922	chr20:30154099-30155880,chr20:30149540-30155880;chr20:30156028-30156922		chr20:30155881-30156027			5.32	2.30	5.68	3.36	2.81	2.03	2.29	3.38	4.92	2.44	2.60	2.84	2.33	6.73	5.38	2.60	2.87	2.92	1.79	4.42	3.28	4.29	3.42	2.83	1.24	5.76	5.69	2.89	2.48	2.92	6.06	6.42	1.93	3.05	2.40	3.74	2.11	5.54	3.43	0.000641	0.084027
K	intron_retention		chr19	+	chr19:1428995-1429965				chr19:1428994-1428995;chr19:1429965-1429966		2.78	3.64	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	4.11	2.44	5.41	0.00	2.56	0.00	0.00	1.25	3.92	0.00	5.56	4.76	3.03	1.41	5.36	0.00	0.00	0.00	0.322812	1.000000
N	cassette	RBM10	chrX	+	chrX:47032597-47035898	chrX:47032597-47034417;chrX:47034492-47035898		chrX:47034418-47034491			90.91	72.73	84.21	NA	NA	NA	100.00	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	81.82	NA	NA	100.00	NA	70.00	93.75	77.78	NA	NA	NA	NA	87.50	NA	100.00	100.00	90.48	86.37	93.75	7.38	0.442711	0.746613
K	intron_retention	ADA	chr20	-	chr20:43248489-43248939				chr20:43248488-43248489;chr20:43248939-43248940		5.93	1.31	6.67	2.68	3.68	1.31	0.00	0.00	0.00	1.00	2.13	1.62	0.00	0.00	0.00	1.35	1.20	1.37	2.53	3.30	4.90	3.49	3.70	4.12	2.86	3.15	3.92	2.41	2.01	1.02	4.08	6.06	3.40	4.32	2.25	2.42	1.92	3.22	1.30	0.937345	1.000000
N	alternative_acceptor	ANKFY1	chr17	-	chr17:4067468-4072491;chr17:4071206-4072491	chr17:4070488-4072491		chr17:4067468-4070487;chr17:4070488-4071205	chr17:4067467-4067468;chr17:4070487-4070488		2.47	3.12	2.70	NA	18.18	5.00	1.59	1.06	2.33	3.57	1.92	2.04	1.56	2.53	2.70	2.56	1.89	2.33	15.00	1.59	19.05	6.25	7.69	2.56	13.33	5.19	3.45	3.12	6.90	3.51	2.50	3.23	5.00	2.78	2.78	1.27	4.06	2.49	-1.58	0.164226	0.660713
K	intron_retention	DCTN1	chr2	-	chr2:74593503-74593585				chr2:74593502-74593503;chr2:74593585-74593586		1.85	0.00	3.12	NA	0.00	NA	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	10.34	4.48	5.41	0.00	2.44	1.67	3.45	0.00	3.70	3.23	0.00	0.00	0.00	0.00	2.44	0.00	0.93	0.93	0.485980	1.000000
K	cassette	APLP2	chr11	+	chr11:130005611-130010292	chr11:130005611-130007150;chr11:130007187-130010292		chr11:130007151-130007186			8.39	10.03	8.05	12.64	10.65	14.54	13.23	11.53	11.62	20.48	18.45	17.64	10.22	8.24	12.20	18.99	14.27	17.01	8.62	6.68	8.70	11.13	11.59	12.43	11.16	11.07	9.91	15.11	14.49	14.24	7.56	6.96	8.37	8.92	9.80	10.52	10.12	8.32	-1.81	0.236747	0.709176
K	intron_retention	UFD1L	chr22	-	chr22:19438268-19442271				chr22:19438267-19438268;chr22:19442271-19442272		14.08	17.19	22.67	12.15	13.57	9.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	9.23	12.86	6.12	19.57	11.63	10.26	13.35	9.72	12.86	6.82	8.96	8.47	10.23	17.71	8.78	20.00	11.11	14.93	9.00	9.98	0.97	0.746786	1.000000
K	intron_retention	POLR3C	chr1	-	chr1:145594995-145595118				chr1:145594994-145594995;chr1:145595118-145595119		8.33	0.00	12.82	3.23	4.08	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	4.35	0.00	0.00	2.78	0.00	8.16	0.00	0.00	0.00	0.00	0.00	3.70	9.30	4.35	5.88	3.12	6.25	1.31	1.85	0.54	0.496318	1.000000
K	intron_retention	PHB2	chr12	-	chr12:7076943-7077054				chr12:7076942-7076943;chr12:7077054-7077055		9.26	6.73	8.33	2.50	4.40	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	2.06	0.64	0.48	0.00	3.57	8.11	4.23	7.14	7.53	7.14	0.00	0.00	3.41	7.55	1.14	5.88	9.68	8.62	1.61	10.00	6.17	9.86	1.07	4.05	2.98	0.653950	1.000000
N	alternative_donor	SFPQ	chr1	-	chr1:35643638-35644265;chr1:35643638-35652547;chr1:35643638-35646735	chr1:35643638-35652601		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		62.22	88.24	57.58	60.23	56.04	72.61	50.00	53.85	73.33	22.81	24.44	13.51	37.04	64.71	73.08	29.23	28.89	24.24	92.17	66.67	85.96	40.26	41.46	36.36	94.57	70.00	72.00	26.67	34.92	50.57	88.37	79.27	93.33	26.37	28.57	34.95	90.20	65.69	-24.52	0.493446	0.747660
K	jcn_only_AD	HNRNPUL1	chr19	+	chr19:41770598-41774127	chr19:41770704-41774127		chr19:41770598-41770703	chr19:41770597-41770598		90.48	92.31	90.74	NA	NA	NA	82.86	94.34	95.77	85.71	81.36	82.69	79.31	93.33	95.00	86.76	79.56	86.96	NA	86.67	NA	NA	81.82	78.57	100.00	94.12	100.00	NA	85.00	NA	NA	79.17	NA	78.26	80.00	80.00	87.59	93.33	5.74	0.557142	0.777386
N	alternative_acceptor		chr5	.	chr5:176943449-176943725;chr5:176943514-176943725;chr5:176943518-176943725	chr5:176943485-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		0.00	0.00	3.70	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	4.17	2.33	7.69	0.00	2.27	0.00	0.00	0.00	0.00	0.698331	0.886724
K	intron_retention	KIAA2013	chr1	-	chr1:11980390-11982692				chr1:11980389-11980390;chr1:11982692-11982693		3.68	4.11	5.44	1.33	2.44	3.57	1.45	0.00	0.00	1.23	1.97	0.00	1.36	0.00	3.09	1.75	1.40	0.00	2.55	5.19	3.09	6.06	3.70	20.00	2.38	3.66	3.25	4.17	2.65	1.56	7.41	5.97	5.42	4.00	7.63	5.48	2.46	3.67	1.21	0.971822	1.000000
N	alternative_acceptor	CORO7,CORO7-PAM16	chr16	-	chr16:4412687-4414276	chr16:4412740-4414276		chr16:4412687-4412739	chr16:4412686-4412687		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.35	100.00	100.00	95.35	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.176207	0.660713
K	jcn_only_AD	PSMC3	chr11	-	chr11:47447502-47447667;chr11:47447502-47447683	chr11:47447502-47447755		chr11:47447668-47447683;chr11:47447684-47447755	chr11:47447683-47447684;chr11:47447755-47447756		100.00	100.00	97.62	NA	100.00	NA	98.53	96.08	96.36	95.18	98.81	100.00	97.33	94.74	96.92	97.52	98.91	100.00	96.67	92.42	98.18	100.00	93.44	97.06	100.00	95.24	94.74	94.59	100.00	97.92	92.86	95.45	100.00	95.00	100.00	95.74	99.27	94.99	-4.28	0.024607	0.366050
N	intron_retention	CASP1	chr11	-	chr11:104896328-104896972				chr11:104896327-104896328;chr11:104896972-104896973		100.00	100.00	98.55	96.43	100.00	94.51	100.00	98.59	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	NA	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.30	-0.70	0.179880	1.000000
N	alternative_acceptor	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61135723;chr11:61135471-61136068;chr11:61135471-61136071	chr11:61135471-61136243		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		0.00	0.00	0.00	2.70	5.26	13.64	0.00	0.00	0.00	0.00	2.33	NA	NA	0.00	NA	0.00	4.55	NA	11.11	0.00	0.00	5.26	3.03	NA	NA	0.00	0.00	4.35	4.17	0.00	0.00	4.35	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	cassette	NMRK1	chr9	-	chr9:77684019-77684810	chr9:77684019-77684657;chr9:77684730-77684810		chr9:77684658-77684729			100.00	100.00	100.00	NA	100.00	100.00	94.44	94.59	92.50	NA	68.18	88.89	88.89	95.83	91.67	NA	80.00	83.33	100.00	100.00	100.00	NA	100.00	100.00	100.00	89.66	96.72	NA	90.62	97.56	94.44	93.75	91.67	100.00	84.62	90.62	97.22	95.21	-2.01	0.975668	0.995110
K	jcn_only_AA	PHF23	chr17	-	chr17:7140082-7140703;chr17:7139886-7140703	chr17:7140087-7140703		chr17:7139886-7140081;chr17:7140082-7140086	chr17:7139885-7139886;chr17:7140081-7140082		90.57	100.00	95.45	NA	85.71	NA	92.31	95.59	92.00	85.25	82.54	85.71	90.32	98.48	93.02	94.03	88.00	85.71	100.00	91.84	81.48	82.35	88.89	NA	100.00	93.15	90.00	90.91	85.71	NA	94.87	88.57	81.82	93.02	87.76	89.66	96.16	94.01	-2.14	0.998020	0.999366
K	intron_retention	ARID3A	chr19	+	chr19:968504-971877				chr19:968503-968504;chr19:971877-971878		0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	3.12	4.44	0.00	2.38	4.55	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	UBR4	chr1	-	chr1:19408068-19410997				chr1:19408067-19408068;chr1:19410997-19410998		3.92	5.26	2.29	6.76	6.82	4.41	24.00	2.70	2.38	17.57	23.53	5.56	26.87	0.00	2.06	18.52	26.58	8.43	7.69	0.00	3.26	11.22	10.00	5.96	0.00	2.19	3.55	10.47	18.18	1.97	4.04	1.50	5.66	11.45	10.81	3.99	6.68	2.45	-4.23	0.912572	1.000000
N	alternative_acceptor	TMA7	chr3	+	chr3:48481869-48481950;chr3:48481869-48481959	chr3:48481869-48481954		chr3:48481951-48481954;chr3:48481955-48481959	chr3:48481954-48481955;chr3:48481959-48481960		6.61	6.88	3.77	6.03	6.58	6.41	6.32	5.68	5.21	4.23	5.38	3.57	5.73	4.23	6.19	4.55	5.65	5.00	6.56	4.96	6.99	5.22	4.72	4.04	6.09	5.48	4.76	4.42	4.95	4.61	3.97	5.42	5.46	9.32	5.10	4.76	6.21	5.22	-0.98	0.056523	0.570243
K	intron_retention	RP11-265N6.1	chr15	-	chr15:42824400-42824527				chr15:42824399-42824400;chr15:42824527-42824528		98.04	100.00	100.00	NA	90.91	NA	92.71	100.00	100.00	100.00	100.00	100.00	94.51	95.24	92.06	100.00	91.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	95.05	100.00	92.50	NA	100.00	93.44	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.705835	1.000000
N	cassette	SPCS2	chr11	+	chr11:74660445-74687901;chr11:74676163-74687901	chr11:74676163-74680684,chr11:74660445-74680684;chr11:74680745-74687901		chr11:74680685-74680744			100.00	100.00	98.63	100.00	100.00	100.00	100.00	100.00	100.00	98.98	100.00	100.00	98.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.33	100.00	92.98	100.00	100.00	100.00	98.77	100.00	100.00	97.40	100.00	100.00	98.81	100.00	100.00	0.00	0.688432	0.885445
N	cassette	P4HTM	chr3	+	chr3:49043301-49044119	chr3:49043301-49043496;chr3:49043621-49044119		chr3:49043497-49043620			94.74	100.00	100.00	100.00	93.18	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	94.12	83.33	95.65	100.00	100.00	100.00	96.55	100.00	100.00	100.00	95.00	93.94	100.00	100.00	100.00	100.00	100.00	97.50	-2.50	0.181894	0.709176
K	alternative_last_exon	RP11-227G15.3,ZNF207,ZNHIT3	chr17	+	chr17:34849851-34853449	chr17:34849851-34851066	chr17:34853450-34853992	chr17:34851067-34851667			89.74	90.00	90.54	93.55	93.94	91.11	90.00	93.10	89.09	86.21	91.30	77.78	96.15	96.67	89.29	90.74	90.38	85.71	95.16	89.74	93.10	93.10	92.73	88.89	92.59	92.86	91.07	94.12	94.74	95.00	91.43	90.00	91.57	91.43	93.02	90.00	92.08	92.15	0.07	0.834676	0.904135
K	jcn_only_AA	CPSF1	chr8	-	chr8:145619711-145619858	chr8:145619771-145619858		chr8:145619711-145619770	chr8:145619710-145619711		100.00	95.18	96.77	92.31	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	97.37	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	KAT8	chr16	+	chr16:31139461-31141337	chr16:31139461-31141177		chr16:31141178-31141337	chr16:31141337-31141338		10.00	6.25	6.00	0.00	2.78	NA	5.00	NA	7.14	0.00	5.88	NA	0.00	NA	8.33	0.00	11.11	NA	0.00	9.52	6.67	0.00	3.33	NA	0.00	9.52	5.13	0.00	5.88	0.00	7.14	8.93	4.17	5.00	0.00	0.00	2.08	9.52	7.43	0.001698	0.302671
N	coord_cassette	CCAR1	chr10	+	chr10:70546450-70549466	chr10:70546450-70547683;chr10:70547805-70547899;chr10:70548086-70549466		chr10:70547684-70547804;chr10:70547900-70548085			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_last_exon	PICALM	chr11	-	chr11:85670104-85718584	chr11:85714495-85718584	chr11:85668727-85670103	chr11:85714409-85714494			99.02	NA	99.42	NA	NA	0.00	99.41	99.48	99.37	99.19	99.36	99.05	99.31	99.40	99.35	99.19	99.35	99.56	0.00	98.70	50.00	97.30	98.21	98.89	0.00	98.92	98.88	97.73	97.44	93.10	96.00	98.92	7.14	99.11	98.96	99.34	7.14	98.97	91.83	0.073276	0.281549
N	cassette	TRIP4	chr15	+	chr15:64702028-64716229	chr15:64702028-64710739;chr15:64710928-64716229		chr15:64710740-64710927			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075825-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075086-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		1.37	3.85	1.56	NA	2.94	10.00	0.00	0.88	3.80	0.00	0.00	0.00	0.00	1.94	3.75	5.77	0.00	0.00	3.57	1.56	7.89	0.00	2.22	0.00	9.52	1.45	3.64	0.00	2.63	0.00	5.66	1.79	10.00	0.00	2.56	0.00	3.71	1.50	-2.21	0.267806	0.709013
N	alternative_acceptor	ABCC3	chr17	+	chr17:48755581-48756716;chr17:48755581-48755877;chr17:48755581-48757158;chr17:48755581-48757145	chr17:48755581-48756713		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		8.11	7.41	3.31	NA	7.69	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	7.69	8.70	6.67	0.00	5.00	0.00	11.11	6.45	1.82	0.00	15.69	0.00	8.70	3.26	0.00	6.25	6.90	3.23	3.71	8.11	4.40	0.458520	0.761890
K	jcn_only_AA	POR	chr7	+	chr7:75612955-75615377	chr7:75612955-75613055					100.00	100.00	97.26	100.00	100.00	NA	97.85	97.83	97.96	100.00	98.02	100.00	96.77	100.00	100.00	100.00	100.00	100.00	58.82	91.07	80.00	100.00	100.00	100.00	100.00	100.00	100.00	98.36	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	98.92	100.00	1.08	0.425343	0.694751
N	jcn_only_AD	IFITM10	chr11	-	chr11:1756660-1768896;chr11:1756660-1763353;chr11:1756660-1775032	chr11:1756660-1768986					7.22	10.42	7.69	8.00	7.82	8.70	7.14	3.23	9.68	5.00	6.90	14.58	9.09	0.00	NA	11.43	10.20	5.00	11.66	7.84	8.49	9.23	6.51	7.56	7.77	3.33	6.41	7.50	6.94	5.41	9.63	9.66	14.62	11.36	8.89	8.20	9.75	5.28	-4.48	0.025821	0.367259
K	jcn_only_AD	AC002398.9,LIN37	chr19	+	chr19:36244095-36244917	chr19:36244155-36244917		chr19:36244095-36244154	chr19:36244094-36244095		96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.88	100.00	96.15	100.00	100.00	100.00	92.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.347977	0.657607
K	alternative_donor	DPY30	chr2	-	chr2:32264562-32264801	chr2:32264562-32264661		chr2:32264662-32264801	chr2:32264801-32264802		9.52	0.00	7.32	NA	3.70	NA	5.17	0.00	5.13	10.34	2.56	3.85	6.25	0.00	3.03	2.78	6.45	0.00	6.90	13.79	3.12	4.17	4.84	0.00	NA	NA	6.45	6.67	7.69	6.25	0.00	7.69	6.45	3.57	8.33	2.86	6.25	0.00	-6.25	0.930489	0.984606
N	alternative_acceptor	BMS1P20,SGSM3	chr22	+	chr22:40804702-40804797	chr22:40804702-40804777		chr22:40804778-40804797	chr22:40804797-40804798		14.81	16.36	12.24	10.00	9.26	8.70	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	10.14	15.00	5.45	14.29	11.90	6.67	8.54	0.00	12.24	5.56	8.89	8.00	0.00	7.32	11.11	10.00	12.50	0.00	9.34	0.00	-9.34	0.712132	0.890693
K	jcn_only_AD	NTMT1	chr9	+	chr9:132395081-132396332	chr9:132395145-132396332		chr9:132395081-132395144	chr9:132395080-132395081		78.95	93.48	84.21	86.96	82.14	68.75	97.73	NA	86.49	81.48	90.00	100.00	88.24	100.00	94.29	95.24	85.42	NA	84.78	83.33	83.72	76.92	88.89	NA	87.10	NA	82.76	92.86	79.55	78.57	58.33	70.97	83.33	84.21	82.76	NA	87.67	81.14	-6.53	0.378177	0.657607
N	jcn_only_AA	AC015688.3,LGALS9	chr17	+	chr17:25965381-25967570;chr17:25965381-25967597	chr17:25965381-25967668		chr17:25967571-25967597;chr17:25967598-25967668	chr17:25967597-25967598;chr17:25967668-25967669		3.89	3.98	0.00	8.00	5.41	4.55	5.19	4.14	5.92	4.83	4.60	4.23	4.18	3.62	3.69	3.04	5.13	2.74	4.92	3.64	7.79	4.82	4.68	2.42	4.35	4.32	3.03	3.37	3.43	2.36	8.07	5.41	9.23	5.33	3.57	3.66	4.63	4.01	-0.62	0.530142	0.770087
K	jcn_only_AD	C3	chr19	-	chr19:6679220-6679417	chr19:6679220-6679392		chr19:6679393-6679417	chr19:6679417-6679418		0.00	0.00	3.33	1.87	0.93	0.00	4.55	0.00	0.00	8.51	3.33	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.20	0.83	4.17	0.73	0.00	0.76	0.82	0.00	0.00	1.18	0.56	0.00	0.52	0.00	0.37	0.93	0.72	0.54	0.29	0.00	-0.29	0.343794	0.657607
N	alternative_donor	REEP4	chr8	-	chr8:21998211-21998963	chr8:21998211-21998670		chr8:21998671-21998963	chr8:21998963-21998964		0.00	8.45	3.23	NA	0.00	NA	2.41	0.00	0.00	0.00	1.15	0.00	1.12	0.00	0.00	0.00	0.00	NA	0.00	10.00	0.00	NA	2.13	NA	7.69	0.00	3.45	NA	2.33	NA	NA	3.85	4.00	0.00	3.33	10.00	3.21	0.00	-3.21	0.451800	0.711941
N	alternative_donor	NONO	chrX	+	chrX:70517789-70518318	chrX:70517929-70518318		chrX:70517789-70517928	chrX:70517788-70517789		6.98	1.75	10.00	2.22	3.00	3.51	0.97	0.67	0.52	0.51	0.38	0.61	0.77	0.76	1.52	1.40	0.77	0.00	1.45	4.03	2.48	5.56	3.24	6.52	0.00	7.50	3.20	2.42	1.69	2.49	8.09	7.69	3.80	6.72	7.03	8.88	1.21	5.51	4.30	0.068753	0.449446
K	intron_retention	SRSF9	chr12	-	chr12:120901926-120903429				chr12:120901925-120901926;chr12:120903429-120903430		3.26	5.09	7.82	1.96	2.04	4.35	0.00	0.00	0.00	0.70	0.45	0.00	0.37	0.00	1.55	0.00	0.91	0.00	2.25	5.31	3.23	3.57	2.89	11.76	0.00	5.43	5.44	0.91	3.02	1.37	4.55	8.09	6.25	4.65	4.97	8.51	1.31	3.90	2.59	0.627237	1.000000
K	jcn_only_AD	ARHGAP4	chrX	-	chrX:153187263-153192043;chrX:153187263-153193780;chrX:153187263-153191589	chrX:153187263-153192269		chrX:153191590-153192043;chrX:153192044-153192269;chrX:153192270-153193780	chrX:153192043-153192044;chrX:153192269-153192270;chrX:153193780-153193781		0.00	0.00	9.38	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	C14orf119,PSMA3	chr14	+	chr14:23564829-23566866;chr14:23564829-23566978	chr14:23564829-23566850		chr14:23566851-23566866;chr14:23566867-23566978	chr14:23566866-23566867;chr14:23566978-23566979		1.59	0.00	2.30	4.55	3.77	NA	0.00	1.67	0.00	1.89	1.43	0.00	2.30	1.64	1.61	1.49	1.49	4.35	0.00	4.62	7.32	2.33	4.50	8.11	0.00	3.03	1.43	2.56	3.16	3.33	7.27	3.75	4.00	3.33	5.71	4.00	0.00	2.35	2.35	0.083678	0.585944
K	intron_retention	ATG16L2	chr11	+	chr11:72539822-72539927				chr11:72539821-72539822;chr11:72539927-72539928		0.00	2.72	2.52	0.00	0.78	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	1.05	0.00	1.06	0.00	0.00	5.26	0.27	0.00	2.22	0.00	0.00	NA	0.00	4.13	1.68	2.70	2.86	5.88	0.66	0.00	-0.66	0.159345	1.000000
K	jcn_only_AA	PTPN6	chr12	+	chr12:7060895-7061145;chr12:7060895-7061074;chr12:7060895-7061179	chr12:7060895-7061275		chr12:7061075-7061145;chr12:7061146-7061179;chr12:7061180-7061275	chr12:7061145-7061146;chr12:7061179-7061180;chr12:7061275-7061276		4.32	16.36	7.04	6.25	0.00	NA	1.50	1.91	0.00	2.78	1.24	0.00	1.59	2.29	0.00	0.48	1.28	0.00	0.00	4.13	2.70	3.70	4.91	0.00	0.00	2.96	2.76	3.12	2.42	NA	7.50	3.39	NA	5.26	3.54	6.98	1.50	3.54	2.04	0.991072	0.997790
N	cassette	SLC11A1	chr2	+	chr2:219247826-219251357;chr2:219247099-219251357;chr2:219247099-219249869;chr2:219247794-219249869;chr2:219247826-219249869	chr2:219247826-219248965,chr2:219247099-219248965,chr2:219247794-219248965;chr2:219249089-219249869,chr2:219249089-219251357		chr2:219248966-219249088			82.90	82.93	79.04	NA	84.38	NA	97.14	97.33	95.12	92.22	92.19	89.66	96.88	96.08	95.52	95.80	94.23	92.86	92.31	83.33	87.50	86.67	83.87	83.33	100.00	91.28	87.55	96.00	88.52	94.74	82.14	78.77	75.00	84.81	77.65	83.61	94.59	87.31	-7.29	0.711340	0.896308
K	coord_cassette	HAUS4	chr14	-	chr14:23416941-23421536	chr14:23416941-23419522;chr14:23419620-23420763;chr14:23420899-23421536		chr14:23419523-23419619;chr14:23420764-23420898			100.00	96.30	88.89	NA	100.00	NA	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	NA	88.24	NA	100.00	100.00	94.74	NA	95.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.687959	0.841098
N	cassette	PFDN6	chr6	+	chr6:33258022-33258492	chr6:33258022-33258102;chr6:33258228-33258492		chr6:33258103-33258227			86.67	93.33	96.30	94.29	96.30	89.19	100.00	100.00	97.62	92.11	100.00	89.66	98.18	100.00	98.31	96.92	96.92	100.00	91.46	83.33	92.96	92.59	90.48	77.78	95.56	100.00	88.00	96.77	97.87	93.33	90.00	91.67	93.06	95.83	89.66	88.89	94.44	95.00	0.56	0.586166	0.842370
K	alternative_donor	CLPTM1	chr19	+	chr19:45480718-45488475	chr19:45487874-45488475		chr19:45480718-45487873	chr19:45480717-45480718		1.00	4.17	0.62	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.35	0.00	0.00	0.00	NA	1.11	2.86	0.00	1.15	0.00	15.38	0.00	0.58	0.00	0.00	0.00	1.49	0.76	9.09	1.18	1.14	0.74	4.17	0.50	-3.67	0.155890	0.563271
N	cassette	RBX1	chr22	+	chr22:41360122-41368479;chr22:41349638-41368479	chr22:41349638-41363802,chr22:41360122-41363802;chr22:41363889-41368479		chr22:41363803-41363888			96.35	98.45	96.55	100.00	95.62	94.86	97.32	100.00	97.13	94.79	95.16	96.39	96.84	97.81	97.87	93.57	97.58	100.00	98.15	100.00	97.94	98.98	96.35	95.49	97.29	100.00	98.11	98.15	95.16	96.73	100.00	95.48	97.09	96.09	96.32	96.94	97.31	100.00	2.69	0.069431	0.624766
N	jcn_only_AD	RNF135	chr17	+	chr17:29324681-29325679;chr17:29324617-29325679	chr17:29324350-29325679		chr17:29324350-29324616;chr17:29324617-29324680	chr17:29324349-29324350;chr17:29324616-29324617		96.88	95.65	95.65	NA	94.79	NA	98.70	92.86	85.00	100.00	97.06	NA	96.69	91.89	96.23	100.00	97.96	NA	92.86	92.31	100.00	NA	100.00	NA	100.00	84.80	94.74	90.48	100.00	NA	79.69	93.22	96.72	94.44	95.45	88.89	96.70	92.10	-4.61	0.040448	0.474054
K	alternative_acceptor	CHCHD7	chr8	+	chr8:57127227-57128991	chr8:57127227-57128947		chr8:57128948-57128991	chr8:57128991-57128992		17.24	16.67	18.46	13.33	9.68	11.54	20.00	22.64	19.67	15.71	22.86	13.46	16.33	20.59	20.51	15.85	18.60	18.92	23.08	28.21	20.59	16.67	17.95	17.95	11.54	10.00	19.57	13.64	20.83	18.46	21.43	21.28	12.82	15.38	22.22	22.81	16.50	21.01	4.51	0.309256	0.709013
N	alternative_acceptor	RAB1B	chr11	+	chr11:66036165-66039267	chr11:66036165-66037033		chr11:66037034-66039267	chr11:66039267-66039268		0.00	2.56	0.95	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	1.08	6.67	0.00	1.37	0.00	4.62	0.00	-4.62	0.040954	0.568546
K	intron_retention	MAN2C1	chr15	-	chr15:75653030-75653386				chr15:75653029-75653030;chr15:75653386-75653387		17.65	58.33	34.48	NA	38.46	NA	0.00	0.00	NA	5.88	0.00	0.00	6.06	NA	21.05	0.00	9.09	0.00	NA	23.08	NA	30.77	33.33	18.75	46.15	9.09	23.53	21.43	21.05	NA	NA	31.25	NA	42.11	29.17	23.68	26.11	13.37	-12.74	0.665569	1.000000
N	jcn_only_AA	BCL3,C19orf66	chr19	+	chr19:10200372-10200577;chr19:10200372-10200604;chr19:10200372-10200636	chr19:10200372-10200573		chr19:10200574-10200577;chr19:10200578-10200604;chr19:10200605-10200636	chr19:10200577-10200578;chr19:10200604-10200605;chr19:10200636-10200637		97.18	100.00	97.96	NA	100.00	100.00	100.00	99.38	100.00	100.00	100.00	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	96.25	97.14	95.00	100.00	100.00	NA	100.00	100.00	95.83	100.00	96.05	96.89	97.18	100.00	98.00	100.00	95.76	100.00	97.03	-2.97	0.028859	0.637417
K	jcn_only_AD	UBL7	chr15	-	chr15:74751238-74753377;chr15:74751238-74753008	chr15:74751238-74753448		chr15:74753009-74753377;chr15:74753378-74753448	chr15:74753377-74753378;chr15:74753448-74753449		25.00	30.00	50.00	NA	30.77	NA	40.54	NA	33.33	36.36	38.89	NA	36.67	NA	26.09	26.67	43.75	NA	NA	50.00	33.33	NA	16.67	NA	NA	28.57	23.81	NA	30.00	NA	38.89	37.50	25.00	18.18	42.11	30.77	33.34	33.73	0.40	0.714007	0.851808
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648791-75648946;chr15:75648780-75648946	chr15:75648815-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		0.00	0.00	8.11	2.08	3.26	2.70	0.00	0.00	0.00	8.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.84	0.00	3.33	8.33	2.74	3.03	0.00	0.00	2.86	6.67	1.85	0.00	0.00	3.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	GPNMB,MAGI2-AS3	chr7	+	chr7:23313234-23316646;chr7:23313234-23314803;chr7:23313234-23313683;chr7:23313234-23314549;chr7:23313234-23313693	chr7:23313234-23313672		chr7:23313673-23313683;chr7:23313684-23313693;chr7:23313694-23314549;chr7:23314550-23314803;chr7:23314804-23316646	chr7:23313683-23313684;chr7:23313693-23313694;chr7:23314549-23314550;chr7:23314803-23314804;chr7:23316646-23316647		2.68	2.45	3.70	6.35	3.05	3.61	2.93	3.55	2.84	2.42	3.02	2.65	2.97	2.89	3.35	3.12	2.67	2.42	4.20	2.35	2.90	2.68	3.11	2.19	0.00	3.35	3.48	2.58	2.81	2.52	2.88	1.68	3.86	3.06	3.16	3.20	2.95	2.88	-0.07	0.746029	0.887098
K	intron_retention	OAS1	chr12	+	chr12:113355506-113357291				chr12:113355505-113355506;chr12:113357291-113357292		96.19	100.00	100.00	91.67	100.00	94.12	87.72	93.94	92.78	89.19	100.00	91.14	96.23	97.31	96.81	96.61	90.91	91.35	100.00	97.01	93.68	100.00	100.00	94.31	100.00	96.04	91.67	96.09	100.00	95.21	91.59	90.51	90.91	94.20	NA	90.09	98.12	96.12	-2.00	0.995400	1.000000
N	jcn_only_AA	WDFY4	chr10	+	chr10:50189524-50190764;chr10:50189524-50190734	chr10:50189524-50190553		chr10:50190554-50190734;chr10:50190735-50190764	chr10:50190734-50190735;chr10:50190764-50190765		100.00	91.35	100.00	91.89	100.00	100.00	95.52	93.75	93.55	96.88	94.00	91.30	100.00	96.43	96.30	100.00	94.74	90.48	93.02	97.14	89.16	96.97	89.58	100.00	95.52	95.65	92.86	91.89	91.23	100.00	88.46	90.20	88.64	100.00	96.08	100.00	94.27	96.04	1.77	0.598368	0.813353
K	intron_retention	BCKDK	chr16	+	chr16:31122541-31122620				chr16:31122540-31122541;chr16:31122620-31122621		2.86	0.00	3.75	0.00	4.23	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	5.00	2.56	0.00	0.00	0.00	5.00	3.51	1.20	3.12	6.52	1.28	0.00	1.82	3.08	3.39	0.00	2.25	2.25	0.159460	1.000000
N	jcn_only_AD	GMPR2	chr14	+	chr14:24707512-24707794;chr14:24707612-24707794	chr14:24706769-24707794					2.86	0.00	0.00	NA	7.69	NA	0.00	2.33	0.00	0.00	0.00	0.00	0.00	1.89	0.00	4.55	7.14	6.67	7.69	3.70	2.38	0.00	5.26	0.00	0.00	0.00	1.89	0.00	1.85	0.00	4.35	5.13	7.69	0.00	8.33	12.50	0.00	2.59	2.59	0.981585	0.993198
N	cassette	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24679975-24682614	chr14:24679975-24680885;chr14:24681036-24682614		chr14:24680886-24681035			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	PSAP	chr10	-	chr10:73583654-73585593				chr10:73583653-73583654;chr10:73585593-73585594		4.11	0.00	14.00	0.00	0.00	NA	2.49	5.53	3.64	0.00	2.34	0.00	3.21	4.66	4.58	1.75	3.62	0.30	0.00	5.88	0.00	2.15	2.76	1.70	5.26	9.63	8.33	0.00	2.73	0.00	1.39	3.79	0.00	3.45	7.32	1.99	1.25	5.10	3.85	0.083932	1.000000
K	jcn_only_AD	C15orf39	chr15	+	chr15:75501166-75503089	chr15:75501218-75503089		chr15:75501166-75501217	chr15:75501165-75501166		32.14	55.00	26.67	NA	52.63	NA	63.16	44.44	38.46	NA	66.67	NA	52.17	35.00	38.46	NA	59.09	NA	26.67	46.15	NA	NA	40.00	NA	78.57	25.93	54.55	58.33	41.18	50.00	31.58	35.71	46.67	NA	30.00	NA	53.59	33.57	-20.02	0.054979	0.533406
K	intron_retention		chr16	-	chr16:1399610-1399889				chr16:1399609-1399610;chr16:1399889-1399890		0.00	1.07	2.04	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	1.75	0.00	0.98	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.21	0.00	0.00	3.57	0.49	0.00	-0.49	0.895112	1.000000
K	jcn_only_AA	YIPF2	chr19	-	chr19:11033851-11033947	chr19:11033868-11033947		chr19:11033851-11033867	chr19:11033850-11033851		24.14	40.91	42.31	NA	26.92	26.67	10.20	13.04	21.05	7.14	8.77	6.67	9.30	13.33	4.00	7.69	4.08	9.09	33.33	38.46	24.24	NA	25.93	23.08	43.75	35.71	28.00	30.77	24.00	11.76	25.00	36.84	21.21	50.00	21.05	22.73	27.27	24.57	-2.70	0.846900	0.938257
N	cassette	DAP3	chr1	+	chr1:155695203-155697398	chr1:155695203-155695782;chr1:155695811-155697398		chr1:155695783-155695810			95.83	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.50	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	NA	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	0.00	0.175194	0.709176
N	jcn_only_AD	FBXL15	chr10	+	chr10:104181064-104181543	chr10:104181265-104181543		chr10:104181064-104181264	chr10:104181063-104181064		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AD	SAE1	chr19	+	chr19:47708387-47712415;chr19:47708517-47712415	chr19:47706998-47712415		chr19:47706998-47708386;chr19:47708387-47708516	chr19:47706997-47706998;chr19:47708386-47708387		100.00	100.00	94.83	100.00	100.00	NA	100.00	95.45	100.00	100.00	98.59	100.00	96.10	100.00	100.00	100.00	93.75	100.00	100.00	91.89	100.00	90.48	95.24	88.89	NA	95.45	92.68	93.33	98.15	100.00	94.12	88.57	100.00	91.11	98.25	100.00	100.00	95.45	-4.55	0.082034	0.629777
K	jcn_only_AA	DHX38	chr16	+	chr16:72143410-72144941	chr16:72143410-72144854		chr16:72144855-72144941	chr16:72144941-72144942		100.00	96.27	100.00	88.68	97.06	94.20	93.55	91.30	95.24	88.57	94.59	100.00	97.62	95.65	100.00	91.89	92.00	88.57	100.00	92.11	91.55	100.00	93.90	100.00	98.77	100.00	98.51	94.00	95.16	95.12	91.07	94.12	95.71	93.94	95.56	94.74	96.94	93.88	-3.06	0.344825	0.663989
N	jcn_only_AD		chr20	-	chr20:43255241-43257689;chr20:43255241-43255428	chr20:43255241-43257687		chr20:43255429-43257687;chr20:43257688-43257689	chr20:43257687-43257688;chr20:43257689-43257690		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.27	100.00	100.00	100.00	99.58	NA	100.00	100.00	100.00	100.00	100.00	94.57	98.25	100.00	99.55	100.00	99.69	100.00	100.00	0.00	0.202711	0.657607
N	coord_cassette	TPRA1	chr3	-	chr3:127292632-127295459	chr3:127292632-127294245;chr3:127294349-127294591;chr3:127294653-127294782;chr3:127294894-127295459		chr3:127294246-127294348;chr3:127294592-127294652;chr3:127294783-127294893			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	91.67	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	82.35	100.00	97.56	100.00	100.00	100.00	0.00	0.437615	0.680734
N	cassette	ETFA	chr15	-	chr15:76580287-76603690;chr15:76580287-76587931	chr15:76580287-76584771;chr15:76584855-76603690,chr15:76584855-76587931		chr15:76584772-76584854			100.00	100.00	93.02	NA	100.00	NA	97.22	100.00	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	98.61	100.00	1.39	0.260225	0.709176
N	jcn_only_AA	AP1G2	chr14	-	chr14:24032512-24032588;chr14:24032492-24032588	chr14:24031803-24032588		chr14:24031803-24032491;chr14:24032492-24032511	chr14:24031802-24031803;chr14:24032491-24032492		69.23	53.85	77.78	NA	60.00	NA	100.00	90.91	96.00	NA	100.00	NA	95.00	92.31	95.24	NA	100.00	NA	46.15	78.57	81.25	NA	82.35	NA	NA	73.53	77.42	NA	70.59	NA	80.00	75.00	63.64	NA	83.33	76.92	63.64	79.28	15.64	0.469728	0.730109
K	intron_retention	NAPA	chr19	-	chr19:47991148-47991491				chr19:47991147-47991148;chr19:47991491-47991492		88.25	88.31	93.20	91.51	93.51	88.64	89.55	90.77	92.28	89.26	90.80	86.73	89.19	90.26	93.01	90.76	88.27	87.69	91.32	89.94	91.04	95.80	93.83	91.40	89.30	90.67	92.62	94.47	93.14	93.37	90.39	91.58	87.60	93.89	91.28	94.01	89.25	90.33	1.08	0.234398	1.000000
N	alternative_acceptor	UBAC1	chr9	-	chr9:138830126-138831518	chr9:138830207-138831518		chr9:138830126-138830206	chr9:138830125-138830126		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.92	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	97.06	100.00	100.00	92.31	NA	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AA	SPAG7	chr17	-	chr17:4864149-4871014	chr17:4869615-4871014		chr17:4864149-4869614	chr17:4864148-4864149		2.63	6.90	0.00	0.00	6.78	5.56	3.08	1.92	2.59	2.80	3.31	3.95	5.21	6.56	3.28	5.56	4.67	2.53	8.33	3.45	5.00	4.65	2.67	0.00	18.75	0.00	1.30	3.23	3.70	2.27	0.00	0.00	0.00	4.65	2.27	6.78	6.05	2.27	-3.78	0.148612	0.663989
N	jcn_only_AA	PREX1	chr20	-	chr20:47305343-47307484	chr20:47305365-47307484		chr20:47305343-47305364	chr20:47305342-47305343		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	2.86	0.00	0.00	NA	5.66	NA	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	NA	0.00	0.00	NA	0.00	2.33	0.00	0.00	0.00	0.00	0.493895	0.749796
N	alternative_donor	ZDHHC6	chr10	-	chr10:114185352-114188139	chr10:114185352-114186871		chr10:114186872-114188139	chr10:114188139-114188140		94.87	87.10	100.00	100.00	96.77	97.47	95.65	100.00	92.86	94.87	100.00	100.00	95.83	100.00	90.91	100.00	100.00	100.00	95.45	97.44	96.00	100.00	96.72	100.00	100.00	96.67	95.92	100.00	100.00	97.78	100.00	100.00	95.24	100.00	100.00	100.00	95.55	98.72	3.17	0.130663	0.543255
K	intron_retention	ADPRHL2	chr1	+	chr1:36557696-36558022				chr1:36557695-36557696;chr1:36558022-36558023		1.59	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	2.44	1.02	0.00	0.00	0.00	0.00	0.00	0.81	4.88	4.55	0.00	0.00	0.00	2.21	0.00	0.00	0.00	0.482529	1.000000
N	jcn_only_AD	PHYH	chr10	-	chr10:105207326-105209156;chr10:105207326-105209325	chr10:105207326-105209143		chr10:105209144-105209156;chr10:105209157-105209325	chr10:105209156-105209157;chr10:105209325-105209326		77.78	81.16	81.25	NA	81.08	NA	76.09	64.29	78.57	NA	72.97	NA	77.68	66.67	100.00	85.71	79.69	NA	80.77	83.33	85.00	NA	72.73	NA	100.00	75.00	77.78	90.00	77.03	60.00	NA	66.67	76.47	81.25	70.15	72.73	79.22	75.00	-4.22	0.126249	0.657607
N	alternative_acceptor	ADAM10	chr15	-	chr15:58889718-58891796	chr15:58889841-58891796		chr15:58889718-58889840	chr15:58889717-58889718		100.00	100.00	98.11	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	95.12	98.13	97.92	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	98.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	0.00	0.941648	0.984632
K	intron_retention	NAP1L4	chr11	-	chr11:2972546-2973009				chr11:2972545-2972546;chr11:2973009-2973010		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	cassette	PDCD6IP	chr3	+	chr3:33905622-33907842	chr3:33905622-33906734;chr3:33906923-33907842		chr3:33906735-33906922			100.00	100.00	100.00	100.00	95.89	NA	100.00	98.33	99.06	98.10	96.47	95.92	98.53	100.00	100.00	95.30	94.42	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	98.76	100.00	98.84	100.00	100.00	0.00	0.970000	0.992393
N	alternative_acceptor	FES	chr15	+	chr15:91434422-91434783	chr15:91434422-91434729		chr15:91434730-91434783	chr15:91434783-91434784		11.11	4.55	4.00	9.09	10.00	NA	0.00	0.00	0.00	NA	0.00	NA	2.30	NA	NA	0.00	4.76	NA	2.78	0.00	11.76	NA	4.17	NA	10.00	16.67	7.69	0.00	5.00	NA	0.00	10.00	7.41	NA	0.00	8.33	3.67	0.00	-3.67	0.793574	0.923537
K	intron_retention		chr7	+	chr7:100482460-100482543				chr7:100482459-100482460;chr7:100482543-100482544		8.96	1.92	8.82	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.72	2.22	3.12	4.26	3.70	14.29	3.92	7.61	3.23	1.25	5.71	18.64	8.93	5.00	2.86	3.08	7.14	0.96	6.44	5.48	0.617223	1.000000
K	intron_retention		chr11	+	chr11:6415272-6415427				chr11:6415271-6415272;chr11:6415427-6415428		0.00	8.62	0.00	0.00	4.88	NA	1.61	4.17	3.12	7.55	2.74	2.63	2.27	4.55	3.23	4.76	1.67	0.00	9.68	0.00	0.00	4.76	7.14	4.76	0.00	2.86	2.86	4.76	5.56	0.00	6.12	4.65	8.57	2.04	6.98	2.17	5.42	3.51	-1.91	0.712560	1.000000
K	alternative_acceptor	FDPS	chr1	+	chr1:155289480-155289647	chr1:155289480-155289584		chr1:155289585-155289647	chr1:155289647-155289648		100.00	100.00	95.38	100.00	100.00	100.00	100.00	100.00	97.22	93.18	98.31	94.29	94.25	92.86	100.00	100.00	98.25	100.00	94.38	95.83	94.00	90.00	93.48	95.24	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	95.59	100.00	100.00	100.00	97.80	100.00	2.20	0.675646	0.880186
N	jcn_only_AA	BAK1	chr6	-	chr6:33540284-33541810;chr6:33535804-33541810	chr6:33541685-33541810		chr6:33535804-33540283;chr6:33540284-33541684	chr6:33535803-33535804;chr6:33540283-33540284		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	81.25	97.75	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.425956	0.694751
K	alternative_acceptor	WDR83OS	chr19	-	chr19:12779426-12779941	chr19:12779432-12779941		chr19:12779426-12779431	chr19:12779425-12779426		98.90	98.17	95.24	97.22	96.95	96.63	98.31	100.00	97.18	97.06	95.24	100.00	97.04	93.94	97.10	96.92	97.96	97.78	97.52	95.16	96.55	94.83	99.02	96.00	98.06	94.87	97.59	93.22	98.96	98.55	96.15	93.27	95.45	98.57	100.00	95.96	97.79	95.66	-2.13	0.421674	0.733210
N	cassette	COL23A1	chr5	-	chr5:177684569-177688722	chr5:177684569-177686721;chr5:177686749-177688722		chr5:177686722-177686748			86.67	100.00	NA	NA	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	96.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.50	90.48	100.00	94.12	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.75	100.00	97.06	-2.94	0.283876	0.709176
N	cassette	HDAC3	chr5	-	chr5:141004933-141005579;chr5:141004933-141005760	chr5:141004933-141005251;chr5:141005332-141005579,chr5:141005332-141005760		chr5:141005252-141005331			100.00	97.75	95.12	100.00	95.60	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	90.00	90.91	98.08	92.31	96.19	100.00	100.00	100.00	95.95	100.00	99.04	93.33	95.24	89.77	94.12	100.00	100.00	100.00	98.88	100.00	1.12	0.762468	0.925284
N	jcn_only_AA	LIMD2	chr17	-	chr17:61776474-61776616;chr17:61776299-61776616;chr17:61767958-61776616	chr17:61776430-61776616					100.00	94.23	96.30	NA	100.00	NA	98.39	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	NA	95.00	NA	100.00	NA	100.00	NA	100.00	90.00	100.00	100.00	97.62	NA	NA	100.00	100.00	NA	100.00	NA	98.39	100.00	1.61	0.953239	0.984403
K	intron_retention	NELFCD	chr20	+	chr20:57568168-57568503				chr20:57568167-57568168;chr20:57568503-57568504		75.00	29.55	43.24	80.00	42.86	92.00	26.32	90.00	33.33	65.38	43.75	56.52	31.58	83.33	35.71	43.10	34.15	47.62	54.55	73.33	65.52	48.57	53.33	67.74	71.43	83.33	53.85	68.57	52.38	78.57	61.11	55.17	35.48	57.89	52.50	55.81	33.53	79.16	45.63	0.002235	0.920759
K	cassette	ST3GAL1	chr8	-	chr8:134511433-134558016	chr8:134511433-134551879;chr8:134551973-134558016		chr8:134551880-134551972			0.00	0.00	2.50	NA	NA	NA	6.25	8.00	4.94	6.25	3.85	11.76	4.17	5.17	1.72	5.17	0.00	4.35	NA	0.00	NA	NA	NA	0.00	0.00	0.00	3.70	NA	NA	NA	NA	10.53	NA	14.29	7.69	6.25	2.08	0.00	-2.08	0.990251	0.997468
N	jcn_only_AA	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61135723;chr11:61135471-61136243;chr11:61135471-61136071	chr11:61135471-61136068		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		97.56	100.00	100.00	98.15	93.24	90.00	97.26	100.00	93.88	96.85	96.26	100.00	94.29	97.53	97.56	98.25	93.55	100.00	86.21	95.92	100.00	95.52	93.33	93.75	NA	94.34	100.00	97.70	94.19	100.00	96.00	84.21	100.00	96.30	97.37	100.00	97.26	96.77	-0.50	0.639632	0.838192
K	jcn_only_AA	RHOT2	chr16	+	chr16:721001-721114	chr16:721001-721082		chr16:721083-721114	chr16:721114-721115		77.27	100.00	87.50	NA	87.50	NA	100.00	NA	100.00	100.00	96.00	NA	100.00	100.00	96.43	100.00	100.00	NA	91.67	83.33	100.00	88.24	90.70	81.25	76.92	100.00	85.71	90.91	88.00	91.67	73.91	77.42	NA	84.21	88.89	93.55	100.00	83.33	-16.67	0.369468	0.663989
K	alternative_acceptor	RBCK1,SNRPB2	chr20	+	chr20:389424-390524;chr20:389424-390527	chr20:389424-390473		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		6.67	0.00	4.76	NA	0.00	3.85	3.45	3.03	3.08	4.76	8.70	4.00	7.14	2.13	3.03	9.52	4.35	6.78	NA	2.33	0.00	NA	0.00	8.57	0.00	1.79	0.00	0.00	0.00	4.48	6.06	0.00	NA	6.25	0.00	4.00	1.73	2.68	0.95	0.618644	0.854460
K	intron_retention	IKBKB	chr8	+	chr8:42177165-42178252				chr8:42177164-42177165;chr8:42178252-42178253		0.00	0.00	17.07	NA	7.14	NA	4.26	4.17	4.35	0.00	2.04	0.00	8.20	4.17	7.32	3.57	3.77	0.00	5.00	3.03	0.00	6.67	8.33	9.52	6.67	8.33	17.24	14.29	10.71	5.88	6.67	10.00	4.76	8.57	7.41	3.45	4.88	4.17	-0.71	0.410793	1.000000
N	alternative_last_exon	ERICH1	chr8	-	chr8:590835-618597;chr8:614677-618597	chr8:565285-618597	chr8:590583-590834;chr8:614200-614676	chr8:564746-565284			8.11	10.53	7.14	5.88	5.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.53	5.56	7.14	0.00	0.00	0.00	16.67	0.00	3.70	0.00	0.00	0.00	9.09	5.88	15.00	0.00	5.56	5.00	10.53	2.78	-7.75	0.183400	0.410722
K	intron_retention	PLXND1	chr3	-	chr3:129303077-129303227				chr3:129303076-129303077;chr3:129303227-129303228		0.00	6.85	1.93	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.34	0.00	9.52	0.00	0.00	0.00	0.00	0.00	6.76	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	2.04	0.00	3.38	0.00	-3.38	0.257370	1.000000
K	jcn_only_AA	HSPA9	chr5	-	chr5:137891231-137902314	chr5:137897479-137902314		chr5:137891231-137897478	chr5:137891230-137891231		100.00	100.00	96.10	70.00	80.77	NA	100.00	100.00	100.00	98.05	98.00	100.00	100.00	100.00	100.00	100.00	98.66	100.00	28.12	100.00	55.10	96.18	96.99	96.86	NA	100.00	100.00	97.00	95.54	92.86	80.56	93.75	25.71	100.00	100.00	97.50	100.00	100.00	0.00	0.222135	0.663989
K	jcn_only_AA	WDR45	chrX	-	chrX:48933323-48933524	chrX:48933413-48933524		chrX:48933323-48933412	chrX:48933322-48933323		96.30	100.00	95.65	100.00	90.24	100.00	95.00	92.16	88.37	91.30	95.12	82.76	100.00	94.83	100.00	100.00	92.59	95.45	90.00	95.24	93.18	100.00	97.78	94.59	100.00	97.87	94.64	95.65	97.14	89.19	98.63	95.65	96.97	97.37	92.31	95.65	98.48	95.77	-2.72	0.557241	0.789398
N	coord_cassette	KLC1	chr14	+	chr14:104151374-104159889	chr14:104151374-104153417;chr14:104153549-104158695;chr14:104158763-104159889		chr14:104153418-104153548;chr14:104158696-104158762			NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	94.12	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
K	jcn_only_AA	GPSM3	chr6	-	chr6:32159648-32159924	chr6:32159686-32159924		chr6:32159648-32159685	chr6:32159647-32159648		73.60	70.54	70.74	60.61	73.12	66.67	86.46	83.07	83.72	71.65	81.92	72.64	85.14	83.80	81.00	80.21	74.74	64.56	65.12	66.39	75.00	62.16	74.05	61.90	76.06	70.67	73.93	69.39	74.38	67.39	69.77	67.46	77.36	68.52	71.00	61.90	76.71	72.13	-4.58	0.629795	0.838179
N	jcn_only_AA	RNF126	chr19	-	chr19:648976-649678	chr19:649053-649678		chr19:648976-649052	chr19:648975-648976		0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.67	3.23	4.05	4.17	0.00	13.33	12.50	5.00	0.00	6.90	7.69	NA	NA	0.00	0.00	9.09	0.00	23.08	8.00	16.67	0.00	0.00	0.00	0.00	12.50	12.50	0.473292	0.732288
K	jcn_only_AA	RPL9	chr4	-	chr4:39460061-39460510	chr4:39460219-39460510		chr4:39460061-39460218	chr4:39460060-39460061		2.04	0.72	2.15	0.84	1.20	0.00	0.48	0.00	0.00	0.93	0.85	0.00	0.87	1.33	0.89	0.65	0.00	0.63	1.77	4.35	3.15	4.17	1.75	3.56	2.00	2.25	1.51	2.64	2.19	0.96	7.94	6.69	3.17	1.35	2.11	4.30	1.32	2.15	0.82	0.267752	0.663989
K	alternative_last_exon	PER3,UBAP2L	chr1	+	chr1:154241889-154243356	chr1:154241889-154242675	chr1:154243357-154243985	chr1:154242676-154243329			80.00	72.41	NA	NA	NA	72.22	85.71	91.67	84.62	NA	NA	NA	92.31	NA	61.54	NA	75.00	NA	47.83	90.91	91.67	50.00	76.47	69.23	30.43	NA	80.00	NA	90.00	90.00	80.00	90.91	73.33	71.43	NA	81.82	72.87	85.45	12.58	0.114915	0.333781
N	jcn_only_AD	RP11-613M10.8,TOMM5	chr9	-	chr9:37588930-37592249;chr9:37588930-37592306;chr9:37588930-37592412;chr9:37588930-37592287	chr9:37588930-37592408		chr9:37592250-37592287;chr9:37592288-37592306;chr9:37592307-37592408;chr9:37592409-37592412	chr9:37592287-37592288;chr9:37592306-37592307;chr9:37592408-37592409;chr9:37592412-37592413		89.66	100.00	98.28	100.00	96.94	100.00	99.07	100.00	97.37	97.09	96.64	98.25	98.20	97.06	97.72	96.18	98.54	97.16	100.00	100.00	97.03	100.00	100.00	100.00	100.00	100.00	96.61	97.40	100.00	100.00	100.00	100.00	100.00	97.67	97.73	97.48	100.00	100.00	0.00	0.351456	0.657607
K	intron_retention		chr19	+	chr19:50338435-50338790				chr19:50338434-50338435;chr19:50338790-50338791		3.23	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	1.14	0.00	NA	0.00	6.25	3.23	3.06	0.00	0.00	0.00	1.72	4.84	3.85	4.76	4.00	0.00	3.03	0.94	2.10	1.16	0.756028	1.000000
N	cassette	PLA2G7	chr6	-	chr6:46672434-46678281;chr6:46675899-46678281	chr6:46672434-46677063,chr6:46675899-46677063;chr6:46677156-46678281		chr6:46677064-46677155			94.19	100.00	95.10	91.61	95.90	95.35	99.15	98.80	98.28	97.14	97.85	98.11	97.16	99.36	97.06	96.32	97.66	100.00	92.78	97.49	96.82	97.12	97.16	97.98	100.00	97.68	96.98	98.98	98.72	98.02	91.16	85.96	84.16	92.93	93.92	90.03	98.16	97.59	-0.57	0.758898	0.925284
K	cassette	ATP6V0B	chr1	+	chr1:44440780-44441761	chr1:44440780-44441336;chr1:44441521-44441761		chr1:44441337-44441520			52.15	46.75	47.14	48.05	54.97	62.50	90.18	87.50	87.58	87.70	85.91	91.67	90.95	87.05	76.77	86.94	90.00	93.27	50.85	53.57	66.39	52.54	48.03	60.23	54.76	66.91	58.86	74.78	80.12	79.31	61.60	47.73	54.22	58.33	58.29	59.69	54.49	64.25	9.77	0.745295	0.917132
K	jcn_only_AD	PPCS	chr1	+	chr1:42922300-42922917	chr1:42922745-42922917		chr1:42922300-42922744	chr1:42922299-42922300		36.36	38.24	37.50	NA	37.93	NA	57.97	69.39	48.33	54.55	58.18	80.00	55.07	55.88	44.26	58.82	57.69	30.77	46.15	40.62	52.38	53.85	51.11	NA	NA	53.66	41.67	64.29	74.07	NA	17.86	29.79	45.45	61.54	58.33	52.17	46.15	47.14	0.99	0.728266	0.859025
K	alternative_donor	LCMT1	chr16	+	chr16:25182119-25186257	chr16:25182127-25186257		chr16:25182119-25182126	chr16:25182118-25182119		97.22	100.00	100.00	100.00	100.00	98.11	94.44	94.12	94.44	100.00	100.00	100.00	100.00	100.00	90.91	NA	92.31	NA	98.08	100.00	97.62	100.00	100.00	92.31	97.50	100.00	95.65	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	100.00	99.04	100.00	0.96	0.873111	0.968901
K	intron_retention	NAPRT	chr8	-	chr8:144659013-144659231				chr8:144659012-144659013;chr8:144659231-144659232		12.77	20.69	30.43	NA	20.69	8.33	2.08	0.00	3.85	0.00	4.35	0.00	2.67	10.00	13.64	7.14	3.23	0.00	11.90	16.67	16.00	NA	17.14	NA	28.57	10.00	20.59	NA	10.71	6.25	15.15	20.00	12.50	14.29	27.78	19.23	12.20	11.38	-0.81	0.856153	1.000000
K	alternative_last_exon	BRD4	chr19	-	chr19:15364595-15364962;chr19:15360102-15364962	chr19:15355574-15364962	chr19:15363803-15364594;chr19:15357858-15360101	chr19:15355521-15355573			34.62	0.00	45.95	6.67	5.00	0.00	28.57	41.03	40.54	30.56	32.35	34.48	40.00	30.30	48.89	39.13	36.36	50.00	0.00	29.41	8.33	13.33	17.39	23.81	21.43	27.27	40.91	16.67	8.70	4.35	17.65	38.10	14.29	27.59	27.59	25.64	17.86	29.86	12.00	0.121940	0.340761
K	intron_retention	HGS	chr17	+	chr17:79652720-79653341				chr17:79652719-79652720;chr17:79653341-79653342		0.00	0.00	4.48	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	2.04	0.00	NA	1.96	0.00	0.00	5.56	5.77	5.26	0.00	3.77	0.00	0.00	0.00	0.00	2.78	NA	4.62	1.61	4.29	0.00	0.00	0.00	0.612201	1.000000
K	intron_retention	CPSF3L	chr1	-	chr1:1250819-1250899				chr1:1250818-1250819;chr1:1250899-1250900		4.35	0.00	20.69	NA	9.09	NA	0.00	7.69	0.00	0.00	5.41	0.00	0.00	0.00	6.06	0.00	6.82	0.00	NA	5.00	5.88	0.00	14.29	0.00	0.00	16.67	20.69	0.00	11.76	0.00	20.00	14.29	6.67	7.69	0.00	20.83	0.00	6.35	6.35	0.202638	1.000000
N	jcn_only_AA	SRRM2	chr16	+	chr16:2819286-2820361;chr16:2819286-2819628;chr16:2819286-2819862	chr16:2819286-2820352		chr16:2819629-2819862;chr16:2819863-2820352;chr16:2820353-2820361	chr16:2819862-2819863;chr16:2820352-2820353;chr16:2820361-2820362		96.30	96.76	92.26	92.65	94.55	94.44	96.83	91.84	93.41	97.14	100.00	93.33	95.18	92.98	91.30	97.06	95.88	88.46	97.14	98.98	96.58	96.25	97.16	90.32	100.00	89.55	93.48	86.25	87.60	83.78	94.44	95.60	100.00	94.00	94.78	86.82	96.98	93.71	-3.27	0.049923	0.663989
K	cassette	WDR45	chrX	-	chrX:48933605-48934088	chrX:48933605-48933849;chrX:48933935-48934088		chrX:48933850-48933934			1.82	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	9.09	0.00	9.38	4.55	0.00	5.26	3.70	4.17	4.76	3.45	3.57	4.35	5.88	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.91	0.91	0.284118	0.709176
N	jcn_only_AA	ARRDC1,IFT74	chr9	+	chr9:27060650-27062615	chr9:27060650-27061993		chr9:27061994-27062615	chr9:27062615-27062616		0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	7.14	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD		chr1	-	chr1:2125573-2126272;chr1:2125573-2126476	chr1:2125573-2126126		chr1:2126127-2126272;chr1:2126273-2126476	chr1:2126272-2126273;chr1:2126476-2126477		100.00	100.00	100.00	100.00	100.00	100.00	88.24	NA	NA	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AA	RPL8	chr8	-	chr8:146016696-146017376;chr8:146017300-146017376	chr8:146017258-146017376					2.22	2.80	1.89	4.67	3.88	3.94	4.20	0.00	3.88	0.37	1.09	1.49	4.59	4.76	3.41	3.50	0.91	0.51	2.56	2.10	2.22	1.57	2.67	1.66	4.90	3.66	4.76	1.61	1.95	3.02	2.27	3.70	2.47	3.71	5.12	4.01	3.50	2.25	-1.25	0.206799	0.663989
N	alternative_acceptor	KDM1A	chr1	+	chr1:23408860-23409671	chr1:23408860-23408942		chr1:23408943-23409671	chr1:23409671-23409672		14.29	5.00	18.75	7.14	11.11	6.52	13.79	10.00	8.00	8.16	7.50	5.88	12.50	9.09	8.00	8.20	12.50	4.00	4.62	18.75	5.71	16.67	14.29	13.33	3.77	21.43	18.52	14.29	11.90	10.00	5.26	11.67	4.76	15.38	16.67	13.95	4.88	12.14	7.26	0.098136	0.598353
K	jcn_only_AA	C19orf25	chr19	-	chr19:1475258-1478772	chr19:1475514-1478772		chr19:1475258-1475513	chr19:1475257-1475258		NA	0.00	22.22	0.00	0.00	NA	0.00	9.09	4.76	4.35	0.00	0.00	6.45	4.35	0.00	6.90	0.00	NA	NA	18.18	0.00	NA	7.14	NA	0.00	0.00	0.00	6.25	0.00	11.76	0.00	17.65	16.67	13.33	0.00	0.00	0.00	4.35	4.35	0.727804	0.877626
N	alternative_last_exon	STX6	chr1	-	chr1:180920055-180953812	chr1:180945783-180953812	chr1:180918835-180920054	chr1:180941848-180945782			97.14	97.73	98.18	100.00	95.12	100.00	97.06	95.00	100.00	100.00	97.87	97.87	97.06	100.00	92.00	95.00	97.87	95.45	94.44	95.24	91.18	100.00	97.30	94.74	90.00	88.89	97.44	100.00	93.94	95.45	95.00	91.30	97.44	100.00	97.87	95.83	97.06	95.12	-1.94	0.836082	0.904135
N	alternative_donor	CTDSP2	chr12	-	chr12:58218103-58220128	chr12:58218103-58218290		chr12:58218291-58220128	chr12:58220128-58220129		1.61	0.00	0.69	NA	NA	NA	0.00	1.20	0.70	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.11	0.00	0.00	0.00	6.67	1.89	NA	0.00	0.00	2.00	0.00	0.60	0.60	0.195344	0.570816
K	intron_retention	PARVG	chr22	+	chr22:44583759-44584993				chr22:44583758-44583759;chr22:44584993-44584994		5.77	12.12	11.86	0.00	4.81	6.25	0.00	0.00	2.63	0.00	0.56	0.00	1.06	0.00	0.00	0.00	0.73	0.00	2.70	6.45	4.26	0.00	5.59	0.00	11.11	3.70	9.86	5.56	4.05	0.00	4.76	7.69	5.26	4.00	5.13	0.98	3.98	4.23	0.25	0.537304	1.000000
N	jcn_only_AA	ZNF276	chr16	+	chr16:89804314-89805599;chr16:89804314-89804414;chr16:89804314-89804383	chr16:89804314-89804405		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	TOM1	chr22	+	chr22:35742966-35743047				chr22:35742965-35742966;chr22:35743047-35743048		6.06	0.00	11.11	0.00	2.56	6.06	NA	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	10.00	7.89	3.39	10.00	3.23	3.70	NA	0.00	4.26	5.26	4.35	7.89	13.16	7.81	12.50	3.70	7.69	8.93	5.00	3.03	-1.97	0.929412	1.000000
K	intron_retention	POLR2I	chr19	-	chr19:36605154-36605240				chr19:36605153-36605154;chr19:36605240-36605241		0.00	0.00	7.89	0.00	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	2.44	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.707223	1.000000
N	alternative_acceptor		chr11	+	chr11:47435238-47435835;chr11:47435238-47435853	chr11:47435238-47435975		chr11:47435836-47435853;chr11:47435854-47435975	chr11:47435853-47435854;chr11:47435975-47435976		89.87	96.72	86.36	84.62	77.55	85.71	100.00	98.36	100.00	100.00	98.95	100.00	100.00	96.05	97.62	97.33	97.78	100.00	90.32	89.47	93.48	85.11	73.24	77.78	70.00	92.98	82.22	88.10	83.67	88.00	90.38	83.95	90.91	88.10	85.58	91.78	93.81	91.68	-2.13	0.763016	0.912836
N	alternative_acceptor	SNX9	chr6	+	chr6:158362007-158363822	chr6:158362007-158362290		chr6:158362291-158363822	chr6:158363822-158363823		5.19	10.34	5.00	6.25	5.13	11.76	1.33	1.43	0.00	0.88	0.90	0.46	2.56	1.69	1.85	1.75	1.03	1.06	NA	4.17	6.67	4.23	5.19	5.74	7.14	3.33	5.41	2.33	3.51	2.35	5.88	8.11	NA	4.83	4.21	6.06	4.85	3.75	-1.10	0.480663	0.779698
N	cassette	TMEM14C	chr6	+	chr6:10725271-10728872;chr6:10723475-10728872	chr6:10723475-10726139,chr6:10725271-10726139;chr6:10726242-10728872		chr6:10726140-10726241			97.56	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	97.58	100.00	100.00	96.46	98.51	100.00	100.00	100.00	93.48	100.00	100.00	100.00	100.00	100.00	98.51	100.00	97.89	97.87	96.77	96.77	100.00	96.39	100.00	100.00	100.00	100.00	0.00	0.476583	0.770451
K	cassette	PPM1M	chr3	+	chr3:52280829-52281697	chr3:52280829-52280989;chr3:52281245-52281697		chr3:52280990-52281244			64.29	80.00	68.57	NA	58.33	NA	86.41	90.62	82.86	65.00	75.00	90.00	90.62	70.97	80.95	87.50	78.33	NA	NA	60.87	83.33	NA	52.17	NA	100.00	69.23	65.52	63.64	70.49	NA	NA	54.17	NA	80.00	69.44	NA	88.52	69.23	-19.28	0.030249	0.436153
K	coord_cassette	MTMR14	chr3	+	chr3:9730767-9743473	chr3:9730767-9731647;chr3:9731828-9739394;chr3:9739551-9743473		chr3:9731648-9731827;chr3:9739395-9739550			44.12	59.21	51.22	63.64	58.73	58.33	80.00	72.73	76.92	81.82	75.51	100.00	71.11	76.32	63.33	74.47	76.74	100.00	52.00	56.25	54.35	68.97	61.43	63.16	66.67	65.62	59.26	72.73	65.22	66.67	58.82	51.85	42.31	66.67	56.52	70.00	62.94	62.22	-0.72	0.954863	0.972993
N	alternative_acceptor	GMPR2	chr14	+	chr14:24706769-24707832;chr14:24706769-24707457;chr14:24706769-24707794	chr14:24706769-24707451		chr14:24707452-24707457;chr14:24707458-24707794;chr14:24707795-24707832	chr14:24707457-24707458;chr14:24707794-24707795;chr14:24707832-24707833		100.00	100.00	100.00	NA	88.24	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.00	NA	83.33	100.00	100.00	NA	94.44	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	92.59	100.00	100.00	88.24	92.31	100.00	100.00	0.00	0.363217	0.709013
N	cassette	HSPA9	chr5	-	chr5:137894347-137897268	chr5:137894347-137895552;chr5:137895781-137897268		chr5:137895553-137895780			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.41	98.82	98.85	100.00	95.45	100.00	98.72	97.73	98.54	NA	100.00	98.36	100.00	97.67	100.00	91.18	96.61	90.00	98.10	100.00	98.09	100.00	100.00	0.00	0.929743	0.982136
N	jcn_only_AA	CH17-472G23.4,PDE4DIP	chr1	-	chr1:144853280-144854164;chr1:144852500-144854164;chr1:144853271-144854164	chr1:144852444-144854164		chr1:144852444-144852499;chr1:144852500-144853270;chr1:144853271-144853279	chr1:144852443-144852444;chr1:144852499-144852500;chr1:144853270-144853271		5.00	0.00	9.36	6.38	0.00	7.14	7.69	4.62	6.00	5.62	4.17	9.00	0.00	9.72	11.71	8.33	10.00	6.73	0.00	5.60	5.31	3.17	5.33	5.24	NA	4.40	9.35	8.06	5.41	7.03	7.53	7.34	24.00	9.95	6.99	9.22	0.00	5.30	5.30	0.969335	0.989156
K	intron_retention		chr17	+	chr17:21205572-21206494				chr17:21205571-21205572;chr17:21206494-21206495		4.23	8.00	2.80	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.37	0.00	3.67	1.92	3.60	NA	2.56	3.03	1.55	0.00	0.00	8.93	11.00	0.00	3.57	5.63	4.60	0.00	2.96	2.96	0.963416	1.000000
K	cassette	MYL6	chr12	+	chr12:56552496-56553758	chr12:56552496-56553370;chr12:56553515-56553758		chr12:56553371-56553514			95.60	95.40	95.88	95.32	95.75	95.03	99.24	99.36	99.18	98.68	99.05	98.88	99.28	99.19	99.16	98.38	98.79	98.55	96.48	96.85	97.46	95.44	96.38	95.22	97.05	98.06	97.71	97.18	98.18	97.58	93.74	93.53	92.70	94.53	95.25	94.93	96.77	97.45	0.69	0.751025	0.920072
N	alternative_acceptor	CKLF-CMTM1,CMTM1,PHKG2	chr16	+	chr16:30762925-30764552	chr16:30762925-30764505		chr16:30764506-30764552	chr16:30764552-30764553		9.09	18.75	8.82	NA	0.00	NA	0.00	0.00	3.23	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.33	7.69	11.11	NA	6.67	NA	NA	9.09	20.00	0.00	9.52	NA	0.00	8.11	NA	NA	6.67	0.00	4.17	3.85	-0.32	0.638230	0.862563
K	coord_cassette	NUBP1	chr16	+	chr16:10846536-10851729	chr16:10846536-10849577;chr16:10849611-10850546;chr16:10850638-10851729		chr16:10849578-10849610;chr16:10850547-10850637			95.45	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	97.22	100.00	100.00	100.00	0.00	0.191813	0.643829
K	intron_retention	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6920334-6920575				chr17:6920333-6920334;chr17:6920575-6920576		6.90	7.69	7.50	5.08	5.88	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	4.59	3.51	5.47	8.33	1.82	5.71	5.00	5.00	5.19	7.14	1.72	3.17	6.85	8.41	6.77	5.88	4.00	3.64	4.79	4.25	-0.54	0.884305	1.000000
K	intron_retention		chr3	+	chr3:52548513-52548716				chr3:52548512-52548513;chr3:52548716-52548717		3.88	15.19	5.68	NA	5.66	4.00	0.78	0.00	0.00	0.00	0.86	0.00	1.40	0.00	0.00	0.00	0.60	0.00	10.47	4.23	NA	0.00	4.26	1.03	10.06	0.00	4.21	0.50	4.59	0.00	0.00	2.08	11.11	1.80	3.46	0.22	10.27	0.00	-10.27	0.063655	1.000000
N	cassette	TMEM180	chr10	+	chr10:104230252-104231029;chr10:104229833-104231029	chr10:104229833-104230421,chr10:104230252-104230421;chr10:104230875-104231029		chr10:104230422-104230874			61.54	45.45	35.14	NA	50.00	NA	90.91	78.79	78.26	NA	100.00	NA	83.33	100.00	76.47	NA	84.00	NA	58.33	70.00	NA	NA	66.67	NA	58.82	59.09	48.65	NA	61.11	NA	NA	46.43	58.33	NA	50.00	NA	58.58	70.00	11.42	0.454308	0.754902
K	intron_retention	DDB2	chr11	+	chr11:47259735-47260350				chr11:47259734-47259735;chr11:47260350-47260351		14.04	2.69	21.43	2.04	1.25	1.49	5.26	6.25	2.78	3.85	11.90	5.88	3.51	6.25	3.77	5.26	11.11	0.00	2.36	12.20	3.70	3.23	6.00	10.34	0.00	10.91	9.09	4.35	1.92	2.22	6.00	4.13	1.37	8.77	9.43	7.81	2.52	8.58	6.05	0.057319	1.000000
N	alternative_acceptor	MYO9B,ZNF738	chr19	+	chr19:17317594-17317921	chr19:17317594-17317910		chr19:17317911-17317921	chr19:17317921-17317922		2.27	1.56	1.52	1.11	1.81	0.00	0.00	0.00	0.00	0.00	0.73	0.00	0.00	0.00	0.67	0.00	0.00	0.00	2.33	1.96	1.85	1.60	3.23	0.98	4.95	1.00	2.88	0.68	1.31	0.77	1.48	3.57	5.88	1.77	0.64	0.75	1.95	1.24	-0.71	0.262462	0.709013
K	intron_retention		chr2	-	chr2:74755449-74755543				chr2:74755448-74755449;chr2:74755543-74755544		5.56	5.60	9.17	2.27	4.21	0.00	1.20	0.00	1.32	0.00	0.00	0.00	0.56	0.00	0.00	0.62	0.00	0.00	1.61	4.49	0.97	10.29	9.42	9.21	16.98	3.30	9.42	4.12	5.97	2.22	4.62	8.94	4.35	5.56	8.00	7.04	2.98	3.90	0.92	0.742916	1.000000
K	intron_retention		chr9	-	chr9:19108746-19116356				chr9:19108745-19108746;chr9:19116356-19116357		67.92	44.19	57.28	63.16	55.56	41.94	82.89	89.66	86.96	89.13	88.00	90.48	88.14	90.74	89.71	91.49	92.17	100.00	46.51	73.88	56.59	77.59	69.42	62.96	22.58	66.96	52.15	88.10	73.51	85.19	68.09	48.07	43.70	74.71	75.00	77.27	45.35	70.98	25.64	0.670900	1.000000
K	jcn_only_AA	CDV3	chr3	+	chr3:133305567-133306739;chr3:133305567-133307196;chr3:133305567-133306005	chr3:133305567-133306002		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		59.68	75.93	46.09	78.72	80.00	83.51	47.37	49.71	56.16	50.14	46.05	44.44	42.33	48.54	42.06	46.61	44.12	35.97	80.39	50.00	77.27	55.17	54.46	52.94	85.56	66.29	59.04	61.45	69.61	73.91	77.05	60.27	82.42	54.07	55.88	52.50	78.16	54.84	-23.32	0.281370	0.663989
K	intron_retention	SEC13	chr3	-	chr3:10343059-10345709				chr3:10343058-10343059;chr3:10345709-10345710		8.82	0.81	3.39	1.79	2.38	3.12	0.00	0.00	0.00	0.00	1.64	1.56	1.02	0.00	0.00	0.00	0.78	0.00	1.22	0.00	0.98	2.13	4.65	3.77	0.00	0.00	1.82	2.63	0.00	1.61	6.25	4.17	0.91	2.74	4.29	2.38	0.86	0.00	-0.86	0.725564	1.000000
K	intron_retention		chr9	-	chr9:5361889-5431896				chr9:5361888-5361889;chr9:5431896-5431897		2.80	0.00	1.23	0.00	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	NA	1.41	0.00	0.00	4.35	2.90	0.00	0.68	0.00	0.00	0.00	3.51	0.00	0.00	0.00	0.474458	1.000000
N	alternative_donor	C6orf48	chr6	+	chr6:31785337-31803187;chr6:31802978-31803187;chr6:31802835-31803187;chr6:31802753-31803187	chr6:31790079-31803187		chr6:31785337-31790078;chr6:31790079-31802752;chr6:31802753-31802834;chr6:31802835-31802977	chr6:31785336-31785337;chr6:31790078-31790079;chr6:31802752-31802753;chr6:31802834-31802835		9.09	0.00	0.00	6.25	5.88	7.14	0.00	3.23	0.00	0.00	NA	5.00	0.00	3.70	0.00	0.00	NA	5.88	4.17	11.76	0.00	0.00	0.00	5.88	5.26	5.88	0.00	0.00	0.00	2.86	5.26	0.00	4.55	0.00	0.00	2.78	2.08	5.57	3.49	0.037023	0.352241
K	intron_retention		chr7	+	chr7:139102476-139106908				chr7:139102475-139102476;chr7:139106908-139106909		4.84	0.00	5.88	5.00	3.33	NA	4.71	10.81	13.70	11.46	9.28	3.23	6.31	10.53	14.29	10.00	5.98	3.45	NA	5.00	0.00	1.59	3.37	1.79	NA	5.00	2.41	2.38	1.56	0.00	4.08	3.09	0.00	3.77	2.47	5.21	2.35	5.00	2.65	0.273196	1.000000
K	jcn_only_AD	ADCY7	chr16	+	chr16:50335036-50339687	chr16:50339498-50339687					97.30	100.00	100.00	NA	93.75	93.75	90.48	95.00	97.06	91.67	86.30	90.70	92.11	90.16	94.59	88.24	84.62	97.44	100.00	95.74	NA	NA	88.24	94.12	NA	91.67	NA	90.91	100.00	93.33	93.75	81.82	100.00	95.65	97.22	93.10	100.00	94.38	-5.62	0.324518	0.657607
N	jcn_only_AD		chr7	-	chr7:26230749-26231920;chr7:26230749-26231041;chr7:26230749-26231218	chr7:26230749-26232114		chr7:26231042-26231218;chr7:26231219-26231920;chr7:26231921-26232114	chr7:26231218-26231219;chr7:26231920-26231921;chr7:26232114-26232115		97.78	92.81	98.08	92.86	90.82	100.00	100.00	100.00	100.00	95.00	100.00	100.00	87.50	100.00	100.00	97.22	92.31	100.00	94.85	95.95	96.35	97.32	93.08	95.37	100.00	97.20	100.00	96.55	93.22	97.85	97.29	95.86	94.26	94.90	90.00	97.13	94.56	97.53	2.98	0.174156	0.657607
N	cassette	SLAMF8	chr1	+	chr1:159803160-159806874;chr1:159806003-159806874;chr1:159806353-159806874	chr1:159806353-159806459,chr1:159803160-159806459,chr1:159806003-159806459;chr1:159806586-159806874		chr1:159806460-159806585			53.85	13.51	63.16	NA	30.43	0.00	34.85	52.38	45.45	25.00	41.07	18.75	35.82	42.00	NA	40.00	48.89	NA	21.67	50.00	25.00	NA	38.46	NA	3.92	40.00	36.36	NA	32.65	9.09	NA	46.15	16.67	NA	38.46	9.09	19.17	50.00	30.83	0.002073	0.147524
K	alternative_donor	CIRBP	chr19	+	chr19:1274440-1274647	chr19:1274444-1274647		chr19:1274440-1274443	chr19:1274439-1274440		22.22	8.68	20.00	11.93	9.75	7.93	11.11	9.09	9.09	NA	15.38	NA	12.50	10.00	13.79	26.67	13.33	NA	9.11	14.58	11.34	20.93	18.95	17.86	6.99	10.00	14.88	15.56	18.75	13.04	10.48	13.08	10.16	9.52	16.07	11.11	9.63	10.24	0.61	0.222834	0.596749
K	intron_retention	RPS16	chr19	-	chr19:39924210-39924304				chr19:39924209-39924210;chr19:39924304-39924305		4.31	1.84	2.74	1.27	0.96	1.31	0.00	0.00	0.10	0.00	0.00	0.11	0.00	0.36	0.22	0.21	0.00	0.13	1.34	3.65	2.05	1.55	1.29	1.64	0.94	2.18	1.15	0.55	0.63	0.77	14.43	5.70	3.59	1.53	1.35	1.29	1.14	2.92	1.77	0.427778	1.000000
K	jcn_only_AA	C2	chr6	+	chr6:31895576-31901386	chr6:31895576-31895731					85.96	83.33	88.24	NA	78.95	NA	76.22	90.05	85.25	90.32	87.23	83.70	82.56	92.09	86.70	77.59	86.60	90.38	NA	82.35	88.89	81.82	73.61	75.81	100.00	86.29	86.17	80.00	87.50	75.51	91.18	85.90	NA	73.17	83.78	80.41	82.94	88.17	5.23	0.669950	0.853918
K	jcn_only_AD	LRRC75A-AS1	chr17	+	chr17:16342729-16343498	chr17:16343018-16343498		chr17:16342729-16343017	chr17:16342728-16342729		42.86	18.23	38.71	23.91	14.14	24.00	17.57	47.62	54.01	11.38	12.80	9.82	6.12	24.14	27.01	10.41	3.89	4.18	15.71	36.36	35.82	27.45	21.18	24.71	9.46	45.45	32.84	11.05	11.97	13.22	35.71	35.14	22.62	15.70	16.58	15.45	16.64	39.61	22.97	0.000367	0.060704
N	alternative_acceptor	CABIN1	chr22	+	chr22:24567964-24572078	chr22:24567964-24572059		chr22:24572060-24572078	chr22:24572078-24572079		3.23	3.33	7.69	NA	6.25	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.69	7.69	4.00	NA	5.26	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	14.29	0.00	0.00	6.25	3.33	1.61	-1.72	0.498827	0.791230
N	alternative_donor	CHKB-CPT1B,CPT1B	chr22	-	chr22:51007511-51007641;chr22:51007511-51007595;chr22:51007511-51007764	chr22:51007511-51007604		chr22:51007596-51007604;chr22:51007605-51007641;chr22:51007642-51007764	chr22:51007604-51007605;chr22:51007641-51007642;chr22:51007764-51007765		9.68	6.38	20.00	14.29	14.29	5.00	NA	NA	NA	NA	NA	NA	NA	NA	10.00	NA	NA	NA	5.00	4.76	18.75	NA	10.00	NA	3.70	2.38	2.94	NA	NA	NA	9.68	6.90	10.53	NA	NA	NA	5.69	7.22	1.53	0.927890	0.984606
N	jcn_only_AD	FES	chr15	+	chr15:91434361-91434783	chr15:91434422-91434783		chr15:91434361-91434421	chr15:91434360-91434361		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	alternative_donor	SIGLEC9	chr19	+	chr19:51629386-51630286;chr19:51630151-51630286	chr19:51630164-51630286		chr19:51629386-51630150;chr19:51630151-51630163	chr19:51629385-51629386;chr19:51630150-51630151		0.00	0.00	1.64	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	5.41	0.95	0.00	0.00	3.85	1.92	1.64	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	AC002398.9	chr19	+	chr19:36237425-36237608				chr19:36237424-36237425;chr19:36237608-36237609		4.21	1.47	6.59	4.62	2.86	8.75	0.00	0.00	1.30	1.12	0.00	0.00	0.72	0.00	1.35	0.00	0.00	0.00	5.88	5.81	4.39	5.00	3.23	1.82	0.00	1.15	2.15	1.67	2.54	2.08	12.66	6.90	9.09	2.74	3.85	2.48	1.09	2.68	1.58	0.985577	1.000000
N	cassette	VAV1	chr19	+	chr19:6821692-6822231	chr19:6821692-6821801;chr19:6821871-6822231		chr19:6821802-6821870			100.00	100.00	99.04	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.53	100.00	92.31	99.00	100.00	100.00	100.00	100.00	100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	94.12	100.00	97.48	98.55	100.00	100.00	0.00	0.209037	0.709176
K	intron_retention	ARPC3	chr12	-	chr12:110874010-110874469				chr12:110874009-110874010;chr12:110874469-110874470		71.58	68.48	78.05	71.19	76.64	71.83	94.05	93.51	92.73	92.16	86.13	89.11	89.36	90.00	91.84	89.66	86.34	83.78	62.38	66.67	85.39	72.13	69.92	71.60	66.07	82.72	78.31	85.19	87.91	86.11	62.11	59.43	57.02	70.37	69.23	72.38	67.28	77.15	9.88	0.775334	1.000000
K	intron_retention		chr11	+	chr11:65348845-65349009				chr11:65348844-65348845;chr11:65349009-65349010		4.94	9.09	4.20	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.06	0.00	0.00	0.00	16.22	1.02	3.60	0.00	0.00	0.00	0.00	4.62	NA	0.00	3.39	2.27	4.54	0.00	-4.54	0.672104	1.000000
N	jcn_only_AA	CREM	chr10	+	chr10:35495980-35500186;chr10:35495980-35500588;chr10:35495980-35500181;chr10:35495980-35498239	chr10:35495980-35500583		chr10:35498240-35500181;chr10:35500182-35500186;chr10:35500187-35500583;chr10:35500584-35500588	chr10:35500181-35500182;chr10:35500186-35500187;chr10:35500583-35500584;chr10:35500588-35500589		25.62	20.41	21.43	32.08	21.33	46.81	13.24	20.23	25.00	16.95	18.33	26.62	15.58	18.35	25.32	15.38	21.43	26.79	31.58	24.54	32.39	15.38	8.51	24.39	30.56	27.97	25.48	18.60	15.62	33.33	17.18	17.53	20.00	14.16	19.28	17.89	20.20	22.38	2.18	0.909433	0.968555
N	alternative_acceptor	CCDC88A	chr2	-	chr2:55515492-55518811;chr2:55518301-55518811	chr2:55506167-55518811		chr2:55506167-55515491;chr2:55515492-55518300	chr2:55506166-55506167;chr2:55515491-55515492		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	13.33	8.33	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.373901	0.709013
N	cassette	NFYC	chr1	+	chr1:41228719-41235027	chr1:41228719-41232267;chr1:41232376-41235027		chr1:41232268-41232375			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	VDAC3	chr8	+	chr8:42260869-42262384;chr8:42260949-42262384	chr8:42260980-42262384		chr8:42260869-42260948;chr8:42260949-42260979	chr8:42260868-42260869;chr8:42260948-42260949		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	coord_cassette	TIMMDC1	chr3	+	chr3:119217775-119236051	chr3:119217775-119222378;chr3:119222468-119222800;chr3:119222869-119232487;chr3:119232567-119236051		chr3:119222379-119222467;chr3:119222801-119222868;chr3:119232488-119232566			97.06	100.00	97.67	87.50	100.00	NA	100.00	NA	100.00	100.00	100.00	94.12	100.00	NA	90.48	100.00	100.00	100.00	100.00	100.00	97.30	100.00	96.15	100.00	100.00	85.71	94.44	100.00	100.00	100.00	94.29	96.00	100.00	100.00	100.00	100.00	100.00	95.68	-4.32	0.159581	0.643829
N	alternative_donor	TAOK2	chr16	+	chr16:30001923-30002104;chr16:30001919-30002104;chr16:30001127-30002104	chr16:30001969-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		9.09	4.00	10.71	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	NA	11.11	10.00	NA	13.64	NA	0.00	15.38	16.00	NA	12.50	NA	0.00	10.00	NA	12.50	7.69	12.50	0.00	10.10	10.10	0.088510	0.476616
K	intron_retention	HSD3B7	chr16	+	chr16:30997853-30997925				chr16:30997852-30997853;chr16:30997925-30997926		17.24	0.00	37.50	NA	15.79	NA	0.00	0.00	0.00	1.85	3.54	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	21.05	13.04	16.67	18.37	NA	28.57	23.53	10.71	8.70	6.25	NA	18.18	18.18	NA	11.36	14.29	5.26	0.00	17.71	17.71	0.792986	1.000000
K	cassette	CPSF3L	chr1	-	chr1:1247749-1247972	chr1:1247749-1247819;chr1:1247882-1247972		chr1:1247820-1247881			100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.84	100.00	98.61	91.30	94.74	100.00	100.00	100.00	100.00	100.00	100.00	95.65	94.87	100.00	96.00	100.00	90.48	100.00	100.00	100.00	0.00	0.996395	0.998934
K	intron_retention	GPR108	chr19	-	chr19:6733074-6733178				chr19:6733073-6733074;chr19:6733178-6733179		1.28	0.00	4.26	NA	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	5.13	2.13	5.41	0.00	NA	0.00	2.56	0.00	0.00	0.00	2.78	2.80	0.00	4.08	1.61	2.88	0.00	0.64	0.64	0.475408	1.000000
N	jcn_only_AD	FRA10AC1	chr10	-	chr10:95430606-95435384;chr10:95430606-95431809;chr10:95430606-95431798;chr10:95430606-95436409	chr10:95430606-95431582					0.00	3.61	2.86	0.00	0.00	2.86	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	6.67	5.26	4.35	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.86	4.44	6.67	0.00	0.00	1.80	0.00	-1.80	0.538541	0.758617
N	alternative_donor	YBX3	chr12	-	chr12:10870721-10871678	chr12:10870721-10870905		chr12:10870906-10871678	chr12:10871678-10871679		7.89	0.00	4.96	7.69	0.00	0.00	0.00	0.00	0.27	0.00	0.00	0.00	0.00	0.00	0.23	0.00	0.00	0.00	NA	4.55	2.27	5.48	2.00	8.14	NA	2.63	2.10	0.00	0.00	1.28	5.26	6.32	0.00	3.53	4.76	5.44	0.00	3.59	3.59	0.044849	0.377550
N	alternative_donor	TBC1D9B	chr5	-	chr5:179306790-179315102	chr5:179306790-179312041		chr5:179312042-179315102	chr5:179315102-179315103		3.45	10.00	4.00	NA	25.00	NA	1.61	1.89	2.27	6.98	2.11	3.03	1.60	2.22	1.72	11.11	1.70	2.86	NA	5.88	NA	10.00	5.45	NA	8.33	5.26	4.00	13.33	12.50	NA	7.69	8.33	NA	9.68	8.16	3.70	4.97	4.36	-0.61	0.701131	0.872310
N	cassette	PSMA3	chr14	+	chr14:58724717-58730422	chr14:58724717-58727676;chr14:58727739-58730422		chr14:58727677-58727738			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.89	100.00	100.00	100.00	100.00	97.26	100.00	100.00	100.00	100.00	91.89	100.00	98.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	0.00	0.307458	0.709176
K	intron_retention	DENND4B	chr1	-	chr1:153906348-153906610				chr1:153906347-153906348;chr1:153906610-153906611		33.33	37.93	25.00	NA	NA	NA	6.82	0.00	4.35	0.00	6.90	NA	9.80	0.00	9.38	4.17	4.65	NA	NA	15.15	NA	23.53	22.50	41.67	45.45	19.35	16.28	14.29	20.83	NA	30.00	25.00	NA	31.03	35.85	42.86	23.87	17.25	-6.62	0.669575	1.000000
K	intron_retention	QARS	chr3	-	chr3:49135692-49135785				chr3:49135691-49135692;chr3:49135785-49135786		5.33	4.21	6.33	5.56	5.75	3.20	0.88	0.00	0.00	0.00	0.00	0.00	0.67	0.00	4.44	0.00	0.00	0.00	2.26	7.50	3.18	7.69	6.86	3.57	4.38	6.00	6.67	7.89	2.82	1.59	11.48	8.08	7.36	1.85	6.25	5.33	3.23	5.67	2.43	0.893536	1.000000
K	intron_retention	ILK	chr11	+	chr11:6630871-6630954				chr11:6630870-6630871;chr11:6630954-6630955		2.04	0.00	3.28	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.45	0.00	1.30	1.09	2.48	0.00	2.70	0.00	9.09	3.25	2.00	0.00	0.54	0.00	10.78	9.29	12.86	3.06	1.64	1.55	0.92	1.56	0.65	0.964974	1.000000
N	jcn_only_AA	JTB	chr1	-	chr1:153949866-153950019;chr1:153949748-153950019	chr1:153949883-153950019		chr1:153949748-153949865;chr1:153949866-153949882	chr1:153949747-153949748;chr1:153949865-153949866		5.26	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	MAF1	chr8	+	chr8:145161368-145161457				chr8:145161367-145161368;chr8:145161457-145161458		12.75	12.59	15.87	13.85	21.93	11.11	2.87	6.49	5.17	4.65	5.70	2.60	6.25	11.24	6.45	9.29	6.79	6.67	12.50	23.08	11.11	16.87	20.77	8.33	10.94	10.61	10.78	8.24	10.79	10.45	23.91	20.78	15.56	16.48	14.43	10.92	11.72	12.00	0.28	0.442402	1.000000
K	jcn_only_AD	CCDC12	chr3	-	chr3:46982556-47007473;chr3:46982556-47018126	chr3:46982556-47017842					0.00	2.56	8.33	0.00	1.71	1.02	0.00	0.00	0.00	1.11	0.00	0.00	2.78	0.00	0.00	0.75	1.25	0.00	1.86	0.00	1.90	0.00	1.77	0.00	0.00	0.00	0.00	0.00	2.02	0.00	0.00	0.00	2.96	0.00	3.08	2.90	2.21	0.00	-2.21	0.028702	0.389335
N	alternative_acceptor	DENND3	chr8	+	chr8:142200517-142202429	chr8:142200517-142202007		chr8:142202008-142202429	chr8:142202429-142202430		8.11	0.00	5.95	0.00	NA	0.93	NA	4.35	0.00	NA	NA	2.56	NA	0.00	0.00	0.00	8.33	0.00	2.94	6.45	2.04	NA	13.33	8.70	3.57	0.00	5.36	6.67	NA	6.15	5.26	8.70	5.56	16.67	NA	10.13	3.25	4.80	1.55	0.588181	0.844088
N	jcn_only_AD	AGAP3	chr7	+	chr7:150784160-150813879;chr7:150789339-150813879;chr7:150783148-150813879	chr7:150787253-150813879		chr7:150783148-150784159;chr7:150784160-150787252;chr7:150787253-150789338	chr7:150783147-150783148;chr7:150784159-150784160;chr7:150787252-150787253		0.00	0.00	0.90	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	NA	5.13	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.237341	0.657607
K	intron_retention	EDC4	chr16	+	chr16:67915749-67915856				chr16:67915748-67915749;chr16:67915856-67915857		22.86	19.57	12.50	NA	28.57	NA	13.04	27.78	0.00	23.08	22.22	0.00	18.75	35.71	20.00	25.00	18.18	NA	NA	13.64	16.67	26.67	21.43	27.27	20.00	23.08	17.07	28.57	23.33	50.00	15.79	13.46	15.79	24.00	15.79	32.00	18.75	22.97	4.22	0.643840	1.000000
N	cassette	USF2	chr19	+	chr19:35762045-35769848	chr19:35762045-35769600;chr19:35769696-35769848		chr19:35769601-35769695			95.14	97.39	96.45	96.77	95.73	96.67	100.00	99.18	98.28	100.00	99.51	100.00	100.00	100.00	100.00	100.00	100.00	99.10	96.80	100.00	100.00	94.62	94.84	93.92	95.86	99.07	100.00	100.00	98.17	99.19	100.00	99.24	97.39	96.45	95.45	98.70	97.39	99.59	2.20	0.363988	0.709176
N	jcn_only_AA	APTX	chr9	-	chr9:32966772-32984628;chr9:32980459-32984628;chr9:32980436-32984628	chr9:32974560-32984628		chr9:32966772-32974559;chr9:32974560-32980435;chr9:32980436-32980458	chr9:32966771-32966772;chr9:32974559-32974560;chr9:32980435-32980436		100.00	100.00	100.00	100.00	96.67	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	93.75	92.86	NA	100.00	92.31	92.31	100.00	100.00	100.00	NA	90.91	93.75	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	96.30	100.00	100.00	0.00	0.314767	0.663989
K	alternative_acceptor	SHISA5	chr3	-	chr3:48509617-48510759	chr3:48510586-48510759		chr3:48509617-48510585	chr3:48509616-48509617		98.08	100.00	100.00	100.00	90.00	88.57	100.00	97.62	97.83	100.00	100.00	100.00	100.00	97.32	100.00	96.97	100.00	100.00	100.00	95.89	100.00	100.00	100.00	100.00	100.00	99.16	96.44	96.51	95.88	95.83	100.00	100.00	89.86	100.00	100.00	98.00	100.00	97.85	-2.15	0.872918	0.956197
N	alternative_acceptor	ACIN1	chr14	-	chr14:23533386-23533563;chr14:23533467-23533563	chr14:23533431-23533563		chr14:23533386-23533430;chr14:23533431-23533466	chr14:23533385-23533386;chr14:23533430-23533431		18.18	25.53	19.51	NA	24.00	NA	22.86	30.95	24.00	30.43	28.12	41.18	32.43	29.03	31.71	31.03	28.57	27.27	15.38	16.67	27.78	20.00	25.56	19.05	0.00	16.92	27.47	33.33	23.40	21.05	17.39	16.95	18.75	25.32	26.00	22.62	20.80	17.79	-3.02	0.664704	0.878422
K	intron_retention	RNF213	chr17	+	chr17:78362490-78362972				chr17:78362489-78362490;chr17:78362972-78362973		5.38	17.39	4.24	6.67	0.00	3.85	1.56	1.83	0.67	1.43	0.00	1.41	2.25	1.45	2.04	3.68	2.50	1.23	NA	3.00	3.23	0.00	0.00	4.64	0.00	3.72	2.11	6.88	0.00	3.62	2.21	2.70	0.00	7.17	1.96	4.77	1.56	2.60	1.04	0.632572	1.000000
N	alternative_donor	CLASP2	chr3	-	chr3:9831299-9831619	chr3:9831299-9831396		chr3:9831397-9831619	chr3:9831619-9831620		100.00	100.00	98.70	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	jcn_only_AA	TXN2	chr22	-	chr22:36876796-36877610;chr22:36876885-36877610	chr22:36876835-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		35.71	7.50	0.00	NA	4.00	NA	20.48	0.00	13.04	28.79	26.81	31.11	17.48	15.79	9.09	11.36	21.32	0.00	13.33	0.00	20.83	10.00	11.11	NA	0.00	0.00	0.00	14.29	10.00	9.09	25.00	0.00	13.64	0.00	6.25	10.53	13.48	7.89	-5.59	0.924803	0.976059
N	cassette	SLC25A39	chr17	-	chr17:42397805-42398425	chr17:42397805-42397989;chr17:42398118-42398425		chr17:42397990-42398117			90.48	93.33	93.88	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	85.71	96.23	89.47	93.88	100.00	85.00	100.00	95.00	100.00	100.00	100.00	100.00	87.18	91.67	100.00	95.00	100.00	94.34	100.00	5.66	0.613843	0.856028
K	intron_retention		chr3	+	chr3:183861354-183861886				chr3:183861353-183861354;chr3:183861886-183861887		13.04	1.41	15.52	16.67	8.33	8.57	0.00	0.00	0.00	3.12	7.50	0.00	5.00	0.00	9.38	4.76	5.88	5.26	9.76	5.26	7.27	10.34	16.07	21.21	0.00	11.76	10.71	9.68	17.54	17.50	12.00	13.33	14.29	22.58	17.78	19.15	3.21	8.51	5.30	0.719368	1.000000
N	alternative_acceptor		chr10	+	chr10:104160249-104160389;chr10:104160249-104160423	chr10:104160249-104160411		chr10:104160390-104160411;chr10:104160412-104160423	chr10:104160411-104160412;chr10:104160423-104160424		94.44	96.15	95.45	92.53	93.06	92.54	97.37	98.57	98.77	97.98	98.08	98.73	100.00	99.35	98.01	98.96	97.26	98.66	92.31	95.76	97.30	91.03	91.75	92.52	86.67	97.33	95.71	94.59	90.20	93.41	94.84	95.22	92.11	93.01	94.35	94.59	94.23	96.55	2.31	0.254980	0.709013
K	jcn_only_AA	ATP5B	chr12	-	chr12:57038740-57038954;chr12:57037372-57038954	chr12:57032981-57038954					2.13	15.20	1.27	15.38	7.84	61.11	0.81	0.38	0.52	0.77	0.33	0.45	1.12	0.84	0.58	1.55	0.66	0.81	32.61	1.99	9.90	0.49	1.39	1.37	24.00	0.61	1.59	3.50	4.11	7.52	3.45	2.13	24.07	2.03	1.02	1.68	19.60	1.42	-18.19	0.039846	0.663989
N	jcn_only_AD	KAT8	chr16	+	chr16:31141928-31142515	chr16:31142222-31142515					100.00	100.00	100.00	95.35	95.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.46	100.00	97.18	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	96.43	98.35	100.00	100.00	91.30	100.00	100.00	0.00	0.175005	0.657607
K	intron_retention	DLGAP4	chr20	+	chr20:35128080-35128601				chr20:35128079-35128080;chr20:35128601-35128602		2.94	0.00	8.62	16.67	10.00	17.65	0.00	0.00	0.61	0.00	0.00	1.16	0.00	1.37	2.27	1.79	2.94	2.70	NA	8.11	4.55	17.24	13.79	16.13	0.00	2.94	6.78	6.25	4.55	9.09	8.57	14.81	NA	13.33	12.50	16.35	0.00	2.94	2.94	0.151828	1.000000
N	alternative_donor	CTSL	chr9	+	chr9:90342311-90342508;chr9:90341224-90342508;chr9:90341165-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341314-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		23.38	32.86	22.95	35.37	32.97	29.63	28.51	31.05	35.61	30.62	26.60	24.16	28.49	33.69	33.59	29.14	23.91	22.30	31.71	24.98	30.74	31.88	29.22	27.27	36.36	25.60	27.00	33.31	32.74	31.48	24.02	21.49	25.00	27.81	28.62	27.86	30.11	25.29	-4.82	0.186021	0.563271
K	intron_retention		chr16	-	chr16:239339-239966				chr16:239338-239339;chr16:239966-239967		21.05	8.93	13.04	10.00	12.68	10.45	13.33	NA	5.56	9.68	0.00	3.57	5.26	NA	8.33	11.43	8.70	0.00	8.89	25.93	9.21	11.63	18.87	13.51	10.10	20.00	7.69	10.00	10.87	6.25	26.19	15.25	20.00	11.63	18.18	15.09	9.52	23.49	13.98	0.012542	1.000000
K	intron_retention	RP11-154D6.1,RP3-331H24.5	chr6	-	chr6:72012749-72014050				chr6:72012748-72012749;chr6:72014050-72014051		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.608000	1.000000
N	jcn_only_AA	ARFGAP1	chr20	+	chr20:61912700-61914137;chr20:61912700-61914170	chr20:61912700-61913456		chr20:61913457-61914137;chr20:61914138-61914170	chr20:61914137-61914138;chr20:61914170-61914171		5.41	0.00	4.76	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.363217	0.663989
N	coord_cassette	NISCH	chr3	+	chr3:52523695-52525367	chr3:52523695-52524090;chr3:52524248-52524720;chr3:52524850-52525367		chr3:52524091-52524247;chr3:52524721-52524849			84.85	81.01	81.82	NA	89.47	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	90.91	100.00	100.00	NA	100.00	92.59	81.25	NA	90.67	NA	70.83	86.67	88.89	NA	100.00	NA	NA	78.79	94.44	85.00	89.36	90.48	97.22	89.63	-7.59	0.997566	0.997566
K	intron_retention	CTD-2545G14.7	chr17	-	chr17:7144999-7145086				chr17:7144998-7144999;chr17:7145086-7145087		90.91	78.95	100.00	NA	83.33	NA	88.89	100.00	86.67	85.71	77.78	92.31	93.10	NA	NA	91.67	78.57	NA	85.71	90.00	81.82	90.91	88.89	76.47	63.64	83.87	90.91	NA	95.45	76.92	77.78	88.00	85.71	90.00	86.36	84.21	85.71	90.00	4.29	0.671146	1.000000
K	cassette	RABEP2	chr16	-	chr16:28931265-28936423	chr16:28931265-28935723;chr16:28935937-28936423		chr16:28935724-28935936			100.00	70.59	82.35	NA	78.95	NA	100.00	91.67	100.00	93.75	92.86	NA	100.00	90.00	100.00	100.00	82.35	NA	NA	NA	83.33	NA	91.67	NA	100.00	100.00	100.00	78.57	83.33	NA	76.92	93.75	81.82	100.00	86.67	93.33	100.00	91.67	-8.33	0.872353	0.956232
N	alternative_donor	RELT	chr11	+	chr11:73103483-73104881;chr11:73104700-73104881	chr11:73103514-73104881		chr11:73103483-73103513;chr11:73103514-73104699	chr11:73103482-73103483;chr11:73103513-73103514		77.78	70.00	78.82	NA	NA	NA	96.00	97.44	97.67	95.65	96.00	100.00	95.45	97.96	96.15	97.62	97.37	100.00	NA	88.24	83.33	92.86	90.00	NA	61.54	88.89	82.61	91.67	85.71	NA	90.00	84.85	NA	88.46	81.82	85.71	82.72	89.44	6.72	0.378665	0.656090
N	alternative_donor	ABCC3	chr17	+	chr17:48756936-48757158;chr17:48755956-48757158	chr17:48755581-48757158		chr17:48755581-48755955;chr17:48755956-48756935	chr17:48755580-48755581;chr17:48755955-48755956		75.00	81.82	71.22	NA	83.33	NA	97.22	83.33	NA	100.00	92.11	100.00	90.91	NA	92.86	100.00	84.21	NA	81.82	73.68	88.00	95.45	84.29	95.83	60.00	64.00	68.89	92.86	77.27	100.00	77.78	70.13	93.33	82.76	75.56	96.55	86.36	75.00	-11.36	0.174456	0.563271
K	jcn_only_AA	BCL7C	chr16	-	chr16:30863644-30900180	chr16:30899312-30900180		chr16:30863644-30899311	chr16:30863643-30863644		96.55	100.00	86.49	100.00	100.00	100.00	93.85	100.00	95.45	96.00	96.88	100.00	95.38	100.00	88.57	100.00	95.45	100.00	100.00	92.31	100.00	96.55	94.03	100.00	100.00	NA	100.00	96.30	94.59	100.00	90.00	88.64	100.00	100.00	100.00	100.00	100.00	96.55	-3.45	0.333039	0.663989
K	intron_retention	CNTRL	chr9	+	chr9:123935788-123935952				chr9:123935787-123935788;chr9:123935952-123935953		7.14	30.43	14.81	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	5.00	5.00	9.09	NA	18.75	NA	NA	0.00	12.50	NA	NA	NA	NA	16.67	25.00	NA	10.00	NA	5.00	2.50	-2.50	0.497607	1.000000
K	cassette	RAD23A	chr19	+	chr19:13059173-13059499	chr19:13059173-13059327;chr19:13059367-13059499		chr19:13059328-13059366			97.73	100.00	96.43	100.00	94.74	90.00	100.00	100.00	96.49	98.91	100.00	100.00	100.00	100.00	97.65	97.73	99.14	100.00	87.50	100.00	100.00	97.56	92.59	96.88	100.00	100.00	100.00	100.00	97.67	100.00	100.00	93.75	88.89	100.00	95.83	94.44	100.00	100.00	0.00	0.215340	0.709176
K	jcn_only_AD	ARL6IP4	chr12	+	chr12:123465814-123466141	chr12:123465847-123466141		chr12:123465814-123465846	chr12:123465813-123465814		54.05	54.43	56.52	46.55	55.10	53.25	52.11	54.84	57.35	49.48	39.01	45.95	53.05	55.17	57.14	50.00	47.22	46.67	55.00	43.48	55.65	47.06	53.33	40.62	53.51	47.83	50.00	44.62	53.26	48.15	60.87	57.58	47.22	55.56	43.28	43.64	53.28	54.45	1.16	0.957131	0.976460
N	alternative_donor	AP2M1	chr3	+	chr3:183888518-183894738	chr3:183892748-183894738		chr3:183888518-183892747	chr3:183888517-183888518		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	SAFB	chr19	+	chr19:5667462-5667830				chr19:5667461-5667462;chr19:5667830-5667831		4.63	3.69	1.85	3.50	1.14	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.18	3.00	2.19	2.22	1.99	2.74	0.00	1.56	0.87	0.00	0.94	1.59	5.88	5.23	4.04	6.10	1.59	4.72	1.09	2.28	1.19	0.735851	1.000000
K	intron_retention		chr4	+	chr4:2826458-2826852				chr4:2826457-2826458;chr4:2826852-2826853		23.33	25.00	22.03	NA	16.67	NA	6.82	3.85	2.78	5.15	8.45	7.14	11.36	7.27	10.87	6.00	7.08	5.26	5.56	5.88	12.50	10.81	11.90	14.58	25.00	12.20	21.43	18.18	20.93	11.54	0.00	12.50	NA	11.36	16.22	15.69	11.36	6.57	-4.79	0.642922	1.000000
K	cassette	MAP7D1	chr1	+	chr1:36639080-36641799	chr1:36639080-36640498;chr1:36640610-36641799		chr1:36640499-36640609			41.61	46.81	41.94	42.86	50.88	NA	59.38	54.67	50.00	60.28	66.45	70.00	62.79	52.29	48.57	54.64	65.14	67.27	50.00	41.67	42.59	42.03	42.97	44.23	70.00	46.98	39.44	56.45	53.41	53.85	39.05	38.96	45.00	46.41	48.91	50.91	54.69	44.33	-10.36	0.078851	0.641134
N	alternative_donor	NDUFS5	chr1	+	chr1:39492075-39494394;chr1:39492701-39494394	chr1:39492071-39494394		chr1:39492071-39492074;chr1:39492075-39492700	chr1:39492070-39492071;chr1:39492074-39492075		70.13	61.45	63.77	66.67	67.07	64.52	85.78	85.71	86.90	87.23	87.29	87.27	63.95	66.13	70.97	60.57	68.64	66.09	69.75	64.41	71.51	61.45	70.55	67.61	74.58	69.23	66.13	65.82	61.31	61.36	54.35	67.31	66.67	66.20	68.35	64.95	68.21	67.68	-0.53	0.719670	0.885082
K	intron_retention		chr1	-	chr1:1685823-1685982				chr1:1685822-1685823;chr1:1685982-1685983		2.52	3.51	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.47	0.97	0.00	0.00	0.00	2.63	1.24	3.57	2.94	1.75	1.64	0.00	1.39	0.95	0.00	0.00	0.00	5.46	4.29	6.98	0.00	0.00	1.35	1.73	1.31	-0.42	0.346283	1.000000
K	jcn_only_AA	HCFC1R1	chr16	-	chr16:3073414-3073847	chr16:3073532-3073847		chr16:3073414-3073531	chr16:3073413-3073414		100.00	100.00	90.00	90.00	93.44	91.18	95.08	94.44	97.73	97.73	96.51	100.00	98.55	94.12	89.66	91.11	97.50	100.00	98.00	100.00	95.12	NA	88.10	NA	92.16	100.00	92.45	85.71	92.96	94.59	90.00	86.96	94.29	92.86	88.89	100.00	96.54	97.22	0.68	0.970541	0.989156
N	alternative_donor	CYTH4	chr22	+	chr22:37695348-37696947;chr22:37695295-37696947	chr22:37696230-37696947		chr22:37695295-37695347;chr22:37695348-37696229	chr22:37695294-37695295;chr22:37695347-37695348		2.82	11.11	6.38	NA	0.00	NA	1.28	1.19	1.72	2.33	1.43	1.02	2.78	0.99	2.02	2.86	1.12	2.44	NA	1.75	5.00	NA	1.75	4.17	11.11	3.82	4.73	4.44	3.23	2.56	3.12	3.19	NA	5.88	4.76	2.91	6.94	2.29	-4.66	0.202511	0.571503
N	jcn_only_AA	SUCLG1	chr2	-	chr2:84660898-84668170;chr2:84663252-84668170	chr2:84660560-84668170		chr2:84660560-84660897;chr2:84660898-84663251	chr2:84660559-84660560;chr2:84660897-84660898		94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	NMRAL1	chr16	-	chr16:4511961-4516153	chr16:4511961-4513660;chr16:4513852-4516153		chr16:4513661-4513851			95.83	90.32	100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.83	100.00	100.00	NA	94.67	100.00	96.30	NA	100.00	NA	95.51	100.00	100.00	NA	92.59	100.00	100.00	100.00	97.75	100.00	100.00	100.00	96.63	100.00	3.37	0.121343	0.709176
K	alternative_donor	EIF2AK2,MITD1	chr2	-	chr2:99790480-99797293	chr2:99790480-99797169		chr2:99797170-99797293	chr2:99797293-99797294		4.76	0.00	8.33	NA	0.00	NA	0.00	4.76	3.45	0.00	0.00	NA	0.00	4.76	3.57	0.00	3.70	NA	0.00	0.00	0.00	NA	3.70	NA	NA	0.00	2.33	NA	5.26	NA	0.00	6.82	NA	0.00	5.26	0.00	0.00	2.38	2.38	0.075587	0.463744
K	cassette	IL17RC	chr3	+	chr3:9974388-9974636	chr3:9974388-9974503;chr3:9974543-9974636		chr3:9974504-9974542			46.15	47.62	45.45	NA	69.23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	42.86	54.55	72.22	NA	NA	NA	33.33	60.00	26.67	NA	NA	NA	35.71	46.15	43.75	NA	NA	NA	43.30	50.35	7.04	0.292764	0.709176
K	intron_retention		chr22	+	chr22:50356514-50356587				chr22:50356513-50356514;chr22:50356587-50356588		12.01	13.95	10.37	8.62	7.94	5.56	3.77	7.78	5.60	3.00	6.67	1.79	0.00	10.09	7.63	4.00	4.35	2.51	24.00	15.81	11.68	8.46	11.39	6.23	0.00	9.96	6.47	4.73	10.42	4.55	20.25	14.01	34.21	8.81	17.04	6.53	8.86	11.05	2.19	0.988358	1.000000
N	cassette	CPVL	chr7	-	chr7:29070376-29111388;chr7:29103851-29111388	chr7:29103851-29105638,chr7:29070376-29105638;chr7:29105738-29111388		chr7:29105639-29105737			96.07	93.45	97.79	96.00	97.33	94.36	99.37	100.00	100.00	99.37	100.00	99.44	98.97	100.00	100.00	99.20	99.33	99.09	96.15	97.81	99.04	97.76	97.78	98.35	98.71	100.00	98.84	99.59	99.53	99.35	98.23	98.02	96.97	98.00	97.56	98.84	97.84	99.12	1.28	0.241850	0.709176
K	alternative_donor	HTRA2	chr2	+	chr2:74758499-74758723	chr2:74758539-74758723		chr2:74758499-74758538	chr2:74758498-74758499		4.76	10.00	11.11	0.00	4.76	NA	4.76	NA	0.00	0.00	0.00	NA	0.00	NA	5.26	0.00	0.00	NA	0.00	6.67	3.45	10.00	0.00	0.00	NA	0.00	8.33	0.00	5.00	0.00	9.09	0.00	6.25	0.00	4.76	NA	4.76	5.71	0.96	0.742906	0.892350
K	cassette	PTTG1IP	chr21	-	chr21:46276280-46285309;chr21:46271543-46285309	chr21:46271543-46281077,chr21:46276280-46281077;chr21:46281187-46285309		chr21:46281078-46281186			99.19	100.00	97.76	NA	90.00	100.00	99.51	99.42	98.60	100.00	100.00	98.55	99.66	98.81	100.00	99.43	99.56	100.00	100.00	98.28	100.00	98.31	97.95	98.70	NA	100.00	99.43	100.00	100.00	100.00	95.35	94.81	NA	100.00	97.32	98.44	99.83	99.00	-0.83	0.116280	0.709176
K	intron_retention	RHOT2	chr16	+	chr16:721001-721082				chr16:721000-721001;chr16:721082-721083		37.04	39.39	46.15	NA	46.15	NA	9.52	NA	13.33	5.56	11.11	NA	20.51	0.00	15.62	14.29	11.54	NA	35.29	35.48	31.58	37.50	33.90	35.00	44.44	25.00	36.84	47.37	40.54	38.89	34.62	35.14	53.85	30.43	31.43	35.56	37.34	34.62	-2.72	0.694631	1.000000
K	alternative_donor	USF1	chr1	-	chr1:161011202-161011440;chr1:161011202-161011524	chr1:161011202-161011623		chr1:161011441-161011524;chr1:161011525-161011623	chr1:161011524-161011525;chr1:161011623-161011624		8.11	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	NA	0.00	NA	NA	2.44	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.979551	0.994374
N	coord_cassette	MXD3,RAB24	chr5	-	chr5:176729498-176730009	chr5:176729498-176729577;chr5:176729646-176729752;chr5:176729832-176730009		chr5:176729578-176729645;chr5:176729753-176729831			100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AA	HNRNPK	chr9	-	chr9:86584296-86585076	chr9:86584356-86585076		chr9:86584296-86584355	chr9:86584295-86584296		68.24	51.61	69.39	55.15	59.88	52.03	64.41	69.41	71.16	52.43	51.98	57.49	60.19	73.08	62.06	70.07	48.76	54.82	58.33	69.90	59.84	70.70	71.81	70.03	38.64	72.76	68.19	71.14	66.14	67.18	65.85	65.21	50.00	69.84	69.70	70.84	54.97	69.66	14.69	0.006733	0.450187
N	cassette	ZBTB8OS	chr1	-	chr1:33093146-33116002;chr1:33093146-33116029;chr1:33093146-33100368;chr1:33093146-33116033;chr1:33099329-33116033	chr1:33099329-33099551,chr1:33093146-33099551;chr1:33099674-33100368,chr1:33099674-33116002,chr1:33099674-33116033,chr1:33099674-33116029		chr1:33099552-33099673			88.00	77.78	89.47	76.92	85.48	74.36	91.18	89.47	92.31	81.25	90.91	91.30	86.67	93.75	96.88	87.50	81.63	85.71	78.00	83.33	90.00	88.89	87.50	75.00	89.19	75.00	91.67	100.00	87.76	77.42	83.33	87.88	79.49	81.82	94.12	87.50	83.08	85.66	2.58	0.635684	0.867575
N	jcn_only_AA		chr11	+	chr11:67811121-67811264;chr11:67811121-67811311	chr11:67811121-67811280		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		88.22	97.14	85.39	83.33	100.00	NA	100.00	97.73	94.66	99.47	97.61	100.00	98.67	94.53	93.55	97.58	95.61	97.25	95.65	90.76	92.39	89.02	92.68	97.59	100.00	87.50	86.58	84.95	89.72	85.71	88.37	87.93	80.00	85.81	93.59	88.05	97.91	89.56	-8.34	0.287149	0.663989
N	jcn_only_AA	VAC14	chr16	-	chr16:70814518-70814692;chr16:70808303-70814692	chr16:70806076-70814692		chr16:70806076-70808302;chr16:70808303-70814517	chr16:70806075-70806076;chr16:70808302-70808303		100.00	100.00	100.00	80.00	100.00	100.00	100.00	97.50	100.00	93.75	98.90	100.00	97.06	100.00	100.00	95.19	98.67	94.87	90.00	100.00	100.00	93.18	96.20	93.88	100.00	100.00	100.00	93.75	100.00	100.00	95.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	0.00	0.637936	0.838192
K	intron_retention		chr19	-	chr19:5707838-5708352				chr19:5707837-5707838;chr19:5708352-5708353		5.56	18.75	4.35	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.13	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.56	NA	0.00	NA	3.03	0.00	0.00	NA	0.00	0.00	8.33	3.33	0.00	0.00	0.00	0.00	0.00	0.513109	1.000000
K	alternative_acceptor	ATG16L2	chr11	+	chr11:72528901-72532712;chr11:72528901-72532243;chr11:72528901-72531181	chr11:72528901-72532592		chr11:72531182-72532243;chr11:72532244-72532592;chr11:72532593-72532712	chr11:72532243-72532244;chr11:72532592-72532593;chr11:72532712-72532713		8.00	0.00	12.31	NA	NA	NA	0.00	NA	NA	NA	NA	NA	7.69	NA	NA	NA	NA	NA	0.00	7.14	9.09	NA	12.00	NA	7.14	0.00	8.57	NA	15.79	NA	0.00	6.52	7.69	0.00	12.50	7.69	3.57	3.57	0.00	0.991210	0.996331
K	intron_retention	BCLAF1	chr6	-	chr6:136582254-136582402				chr6:136582253-136582254;chr6:136582402-136582403		5.56	0.00	10.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	0.00	6.25	0.00	3.70	3.23	0.00	0.00	0.00	9.43	7.69	5.13	2.22	11.11	4.65	0.00	1.85	1.85	0.465818	1.000000
K	jcn_only_AA	SELK	chr3	-	chr3:53919932-53920877	chr3:53919940-53920877		chr3:53919932-53919939	chr3:53919931-53919932		95.54	95.16	93.18	87.76	95.29	92.48	88.89	94.83	95.52	91.76	95.77	92.56	98.15	95.76	95.06	95.60	93.10	95.00	94.87	96.62	97.25	96.55	94.17	92.27	90.20	93.08	93.65	94.94	95.00	94.81	97.71	96.74	97.98	96.72	92.78	93.60	95.02	95.65	0.64	0.447691	0.711959
N	jcn_only_AA	ANKFY1	chr17	-	chr17:4070488-4072491;chr17:4071206-4072491	chr17:4067468-4072491		chr17:4067468-4070487;chr17:4070488-4071205	chr17:4067467-4067468;chr17:4070487-4070488		14.29	0.00	0.00	NA	NA	NA	2.08	3.37	6.25	0.00	8.82	0.00	0.00	2.90	0.00	8.57	6.90	5.26	NA	2.38	NA	NA	NA	5.26	NA	7.14	0.00	15.38	NA	18.75	5.88	0.00	18.18	6.25	5.00	7.69	1.04	4.62	3.58	0.854824	0.943312
K	intron_retention	CERS5	chr12	-	chr12:50524478-50528328				chr12:50524477-50524478;chr12:50528328-50528329		2.17	0.00	1.75	0.00	1.92	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	5.00	2.78	2.17	3.23	1.64	4.76	0.00	0.00	1.56	0.00	6.52	0.00	0.00	2.78	5.56	3.12	2.00	4.44	0.00	1.08	1.08	0.627442	1.000000
K	alternative_acceptor	RABL6	chr9	+	chr9:139726314-139726716	chr9:139726314-139726713		chr9:139726714-139726716	chr9:139726716-139726717		0.00	0.00	5.77	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	7.69	0.00	0.00	5.88	0.00	0.00	3.57	2.56	0.00	0.00	0.00	0.00	0.176429	0.660713
N	alternative_acceptor	ANAPC2	chr9	-	chr9:140070290-140074632	chr9:140072569-140074632		chr9:140070290-140072568	chr9:140070289-140070290		29.03	12.64	36.36	10.00	16.67	11.76	4.17	7.69	7.14	7.14	10.00	NA	10.00	8.33	8.33	14.29	9.09	NA	15.15	35.29	15.15	30.77	23.81	33.33	12.24	23.08	31.43	15.79	16.13	16.00	32.00	28.30	14.58	36.36	25.00	32.26	12.44	26.05	13.61	0.073857	0.585944
K	intron_retention		chr19	-	chr19:36230990-36231280				chr19:36230989-36230990;chr19:36231280-36231281		14.29	21.74	24.00	20.00	24.32	NA	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	5.17	0.00	21.05	11.11	15.00	10.00	27.03	17.65	27.27	5.56	18.18	27.78	19.23	8.57	9.09	16.67	20.00	27.78	30.00	19.23	20.52	7.32	-13.20	0.307622	1.000000
N	cassette	NMRK1	chr9	-	chr9:77684730-77692074	chr9:77684730-77684810;chr9:77684959-77692074		chr9:77684811-77684958			96.08	100.00	100.00	NA	95.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	MRPL40	chr22	+	chr22:19420329-19420787;chr22:19420383-19420787	chr22:19420131-19420787		chr22:19420131-19420328;chr22:19420329-19420382	chr22:19420130-19420131;chr22:19420328-19420329		100.00	100.00	100.00	NA	86.67	91.67	92.50	91.67	93.42	86.36	92.31	100.00	90.24	89.71	92.31	90.32	84.00	87.50	100.00	92.31	91.67	90.91	82.76	92.31	100.00	93.18	92.00	100.00	92.31	96.97	100.00	94.74	92.59	88.89	100.00	100.00	96.30	92.75	-3.55	0.599647	0.802597
N	alternative_donor	QSOX1	chr1	+	chr1:180166026-180166467;chr1:180165930-180166467;chr1:180165735-180166467	chr1:180166012-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		0.74	1.80	1.57	4.44	1.42	2.70	3.94	1.43	0.40	4.44	3.76	4.63	1.69	0.76	0.49	3.85	2.03	4.71	0.90	0.85	1.02	4.48	1.71	7.14	1.25	0.55	1.08	5.66	2.63	4.00	0.99	1.40	1.43	3.77	3.08	2.23	1.56	0.80	-0.76	0.085573	0.475124
N	alternative_donor	SDHB	chr1	-	chr1:17371384-17371635;chr1:17371384-17380246	chr1:17371384-17380442		chr1:17371636-17380246;chr1:17380247-17380442	chr1:17380246-17380247;chr1:17380442-17380443		100.00	100.00	100.00	100.00	100.00	NA	100.00	96.67	100.00	100.00	100.00	100.00	100.00	94.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.52	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.34	-1.66	0.084209	0.475124
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4829561-4830089;chr7:4829561-4830019	chr7:4829561-4829844		chr7:4829845-4830019;chr7:4830020-4830089	chr7:4830019-4830020;chr7:4830089-4830090		21.82	19.18	25.53	23.08	18.18	19.35	0.00	3.03	4.17	7.14	10.00	0.00	3.23	0.00	3.03	0.00	4.35	NA	13.73	24.44	20.45	17.95	19.57	18.42	28.12	15.22	19.05	10.34	13.89	16.67	26.87	27.27	29.17	30.77	20.00	17.14	16.45	18.52	2.07	0.961075	0.990505
N	alternative_donor		chr1	-	chr1:156216548-156219359	chr1:156216548-156217705		chr1:156217706-156219359	chr1:156219359-156219360		90.91	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.46	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	96.66	-3.34	0.189108	0.565974
K	intron_retention	HNRNPUL1	chr19	+	chr19:41770704-41774127				chr19:41770703-41770704;chr19:41774127-41774128		9.52	7.69	3.92	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	8.33	16.67	5.88	0.00	NA	0.00	NA	NA	0.00	NA	5.26	5.88	9.09	3.85	0.00	-3.85	0.365323	1.000000
N	alternative_last_exon	ADCK4	chr19	-	chr19:41192901-41198855	chr19:41198279-41198855	chr19:41192816-41192900	chr19:41197434-41198278			100.00	100.00	91.43	NA	100.00	100.00	88.89	100.00	90.00	100.00	100.00	NA	100.00	100.00	78.12	NA	100.00	NA	100.00	93.75	97.92	NA	100.00	NA	100.00	100.00	91.89	NA	100.00	100.00	100.00	93.94	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.713091	0.821269
N	jcn_only_AD	IGSF6	chr16	-	chr16:21655718-21658627;chr16:21655718-21658460	chr16:21655718-21658453		chr16:21658454-21658460;chr16:21658461-21658627	chr16:21658460-21658461;chr16:21658627-21658628		94.92	100.00	98.94	91.30	96.00	100.00	97.36	97.99	96.83	95.18	98.30	96.22	97.78	98.14	100.00	97.81	97.41	96.99	100.00	95.12	95.16	97.06	95.79	96.49	100.00	95.74	100.00	97.18	97.00	98.15	94.29	98.08	100.00	96.67	96.59	95.45	100.00	95.43	-4.57	0.004333	0.177805
K	alternative_donor	PIH1D1,ZNF428	chr19	-	chr19:49951320-49952731	chr19:49951320-49952596		chr19:49952597-49952731	chr19:49952731-49952732		5.88	1.28	7.46	5.26	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	2.17	0.00	0.00	7.14	0.00	0.00	11.11	12.50	0.00	3.45	6.35	9.09	4.00	5.26	6.67	8.16	1.49	7.41	9.38	10.34	0.00	4.67	4.67	0.050149	0.397730
K	alternative_donor	CWC15	chr11	-	chr11:94705358-94706661	chr11:94705358-94706436		chr11:94706437-94706661	chr11:94706661-94706662		0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	7.41	0.00	1.56	0.00	0.00	0.00	3.12	1.72	0.00	0.00	0.00	2.86	0.00	0.00	1.67	0.00	7.69	0.00	0.00	0.00	0.00	0.00	3.23	6.98	0.00	0.00	1.96	1.79	0.00	0.00	0.00	0.857514	0.960133
N	jcn_only_AD	PYGL	chr14	-	chr14:51387786-51390686	chr14:51387786-51390671		chr14:51390672-51390686	chr14:51390686-51390687		1.67	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.67	0.00	0.00	3.92	1.52	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	3.23	2.94	5.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.28	0.00	0.83	0.83	0.267677	0.657607
N	alternative_donor		chr11	-	chr11:1501717-1502000;chr11:1501717-1502007	chr11:1501717-1501954		chr11:1501955-1502000;chr11:1502001-1502007	chr11:1502000-1502001;chr11:1502007-1502008		94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	CTDSP1	chr2	+	chr2:219268141-219269019				chr2:219268140-219268141;chr2:219269019-219269020		3.95	0.00	5.79	NA	6.67	NA	0.00	1.56	1.22	0.00	1.82	0.00	1.00	1.82	1.72	0.00	0.88	0.00	NA	3.95	3.23	5.26	2.38	0.00	20.83	3.03	3.07	2.78	2.74	0.00	2.38	4.95	10.00	2.04	5.88	3.12	1.00	2.71	1.71	0.861382	1.000000
K	cassette	SLC35F6	chr2	+	chr2:26998545-27000909	chr2:26998545-26999239;chr2:26999351-27000909		chr2:26999240-26999350			100.00	100.00	100.00	NA	NA	NA	94.34	96.43	96.30	100.00	96.20	100.00	98.31	100.00	100.00	96.15	97.78	100.00	NA	90.00	NA	NA	89.29	NA	100.00	100.00	100.00	NA	95.00	NA	NA	100.00	NA	93.75	100.00	NA	99.16	100.00	0.84	0.722044	0.902228
N	cassette	FNBP1	chr9	-	chr9:132678260-132687238;chr9:132681522-132687238;chr9:132671279-132687238	chr9:132681522-132686122,chr9:132678260-132686122,chr9:132671279-132686122;chr9:132686276-132687238		chr9:132686123-132686275			59.18	30.00	28.85	27.27	7.69	NA	19.49	70.09	27.59	24.59	8.93	33.94	17.29	77.06	20.59	22.67	7.95	23.93	0.00	52.27	18.75	31.82	17.86	29.41	NA	66.07	27.50	47.06	35.00	46.43	50.00	15.56	16.67	20.45	14.63	26.85	17.29	62.62	45.34	0.000074	0.038633
K	alternative_last_exon	POLR3C	chr1	-	chr1:145592772-145596903	chr1:145595221-145596903	chr1:145592605-145592771	chr1:145595119-145595220			100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	86.67	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	0.00	0.363217	0.535374
N	jcn_only_AD	PSTPIP1	chr15	+	chr15:77324736-77325202;chr15:77324741-77325202	chr15:77324770-77325202		chr15:77324736-77324740;chr15:77324741-77324769	chr15:77324735-77324736;chr15:77324740-77324741		4.17	9.82	11.43	11.76	12.00	9.09	0.00	NA	0.00	0.00	4.76	NA	0.00	NA	0.00	NA	3.33	NA	8.67	21.43	7.59	27.27	11.11	NA	13.68	20.00	13.04	NA	6.25	NA	20.00	12.82	9.16	14.29	12.90	0.00	8.91	20.00	11.09	0.099587	0.639657
N	jcn_only_AD	CTSK	chr1	-	chr1:150779283-150780689;chr1:150779283-150779605	chr1:150779283-150779724		chr1:150779606-150779724;chr1:150779725-150780689	chr1:150779724-150779725;chr1:150780689-150780690		0.38	0.00	0.00	0.00	0.00	NA	1.06	1.12	0.00	0.00	1.35	0.00	0.00	2.08	0.00	1.67	0.00	2.22	0.00	0.00	0.00	6.12	2.33	2.53	0.00	2.13	0.00	5.13	1.79	0.00	0.00	0.00	0.00	1.72	0.00	1.11	0.00	0.75	0.75	0.121199	0.657607
N	alternative_donor		chr14	-	chr14:24736096-24736892	chr14:24736096-24736865		chr14:24736866-24736892	chr14:24736892-24736893		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	93.75	85.71	100.00	100.00	88.00	100.00	90.48	NA	100.00	NA	NA	100.00	NA	NA	100.00	100.00	100.00	93.75	87.88	NA	NA	NA	100.00	100.00	0.00	0.177815	0.563271
K	intron_retention		chr16	-	chr16:67189198-67189279				chr16:67189197-67189198;chr16:67189279-67189280		5.88	7.14	5.71	5.88	17.65	5.45	0.00	0.98	0.88	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	2.86	6.06	8.16	2.13	6.25	6.67	4.76	0.00	1.82	2.86	7.69	0.00	4.88	6.00	4.76	8.00	15.79	0.00	4.81	3.03	3.85	0.82	0.954527	1.000000
K	intron_retention	H2AFX	chr11	-	chr11:118964972-118965169				chr11:118964971-118964972;chr11:118965169-118965170		95.65	89.80	100.00	100.00	87.50	100.00	89.66	100.00	93.75	90.48	83.33	90.48	91.77	100.00	92.31	83.33	78.79	100.00	85.29	100.00	86.96	95.24	84.62	92.31	88.57	100.00	97.30	100.00	90.70	90.91	100.00	88.10	90.91	100.00	87.50	100.00	89.73	100.00	10.27	0.000111	0.172516
K	intron_retention	AIP	chr11	+	chr11:67257929-67258258				chr11:67257928-67257929;chr11:67258258-67258259		3.77	2.03	2.47	5.56	3.55	3.23	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	3.00	0.00	2.35	0.00	2.67	0.00	4.93	0.00	2.80	2.78	4.17	2.78	6.15	3.42	5.66	6.25	1.82	0.00	2.51	0.00	-2.51	0.879021	1.000000
K	alternative_first_exon	C18orf32,RPL17-C18orf32	chr18	-	chr18:47010142-47013121;chr18:47010142-47013576,chr18:47010142-47013412;chr18:47010142-47012802;chr18:47010142-47014869	chr18:47010142-47015728	chr18:47013577-47013601;chr18:47012803-47012983;chr18:47014870-47014936	chr18:47015729-47015920			3.12	10.53	5.36	NA	5.88	NA	3.23	2.17	1.25	2.50	2.90	3.12	4.23	1.75	5.00	2.33	1.59	3.57	NA	6.25	11.11	13.33	8.11	10.00	NA	2.00	5.17	5.56	4.00	0.00	8.33	5.56	9.09	3.85	5.13	3.23	6.66	2.65	-4.02	0.233666	0.442474
K	alternative_acceptor	IRF3	chr19	-	chr19:50164086-50165204	chr19:50164102-50165204		chr19:50164086-50164101	chr19:50164085-50164086		20.83	22.92	26.47	18.75	10.53	15.79	0.00	5.88	5.00	NA	5.88	NA	9.09	5.88	11.11	NA	4.76	NA	12.87	12.50	15.58	NA	11.90	NA	23.70	31.25	14.00	NA	10.20	20.00	20.00	16.28	13.43	NA	16.67	NA	13.15	16.25	3.10	0.669356	0.880186
N	cassette	WDR11	chr10	+	chr10:122664929-122666287	chr10:122664929-122665387;chr10:122665534-122666287		chr10:122665388-122665533			90.32	100.00	100.00	NA	100.00	NA	99.03	100.00	91.30	100.00	96.97	100.00	97.80	100.00	100.00	100.00	100.00	100.00	100.00	91.18	100.00	92.59	94.20	100.00	NA	100.00	100.00	100.00	94.29	100.00	92.31	88.00	NA	95.83	95.65	100.00	99.52	96.16	-3.36	0.132785	0.709176
N	alternative_acceptor	METTL9	chr16	+	chr16:21636437-21638265;chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666547	chr16:21636437-21666550		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		60.45	49.23	61.22	56.67	53.19	46.15	46.48	39.13	56.76	53.66	43.18	34.48	49.06	41.67	45.45	50.00	44.00	40.00	36.84	59.18	51.22	61.76	60.00	62.50	0.00	41.18	67.61	48.15	44.68	40.74	54.76	63.01	53.33	55.32	54.55	50.00	47.77	48.22	0.45	0.295189	0.709013
K	jcn_only_AA	PSTPIP1	chr15	+	chr15:77327905-77328151	chr15:77327905-77328142		chr15:77328143-77328151	chr15:77328151-77328152		84.21	76.50	88.89	88.57	89.38	92.00	89.39	90.00	88.24	82.35	88.14	NA	91.25	NA	90.91	NA	86.36	NA	80.59	77.27	86.58	90.91	88.14	80.00	84.07	76.47	83.82	NA	100.00	NA	78.95	85.48	79.51	91.43	92.45	90.00	82.33	78.95	-3.38	0.548035	0.782674
K	intron_retention		chr18	-	chr18:47812299-47812391				chr18:47812298-47812299;chr18:47812391-47812392		29.63	30.77	44.00	NA	27.27	NA	0.00	0.00	0.00	NA	7.14	NA	7.69	0.00	11.11	0.00	4.76	NA	NA	29.17	18.18	NA	30.00	NA	51.85	34.78	25.00	NA	38.46	NA	37.50	46.94	40.00	29.41	33.33	42.11	30.77	29.40	-1.37	0.746358	1.000000
N	alternative_acceptor	AKNA	chr9	-	chr9:117106084-117108142	chr9:117106648-117108142		chr9:117106084-117106647	chr9:117106083-117106084		4.76	12.50	5.56	NA	11.11	NA	0.00	0.00	0.00	0.00	1.89	NA	1.96	NA	1.72	0.00	1.89	NA	10.00	0.00	NA	NA	4.84	5.26	12.50	0.00	4.00	NA	4.35	0.00	NA	3.85	26.67	10.00	8.33	8.70	11.25	0.00	-11.25	0.060445	0.574109
N	alternative_donor	MMP14	chr14	+	chr14:23308493-23310699;chr14:23306647-23310699	chr14:23306135-23310699		chr14:23306135-23306646;chr14:23306647-23308492	chr14:23306134-23306135;chr14:23306646-23306647		99.75	98.84	99.54	87.50	100.00	80.00	100.00	99.68	99.77	99.83	99.82	99.44	100.00	99.60	99.62	99.47	99.79	99.44	100.00	99.68	98.43	98.97	99.48	99.40	100.00	99.51	99.89	99.58	100.00	98.17	99.42	99.74	100.00	98.94	99.53	99.14	100.00	99.64	-0.36	0.357472	0.650093
N	jcn_only_AA	AGAP3	chr7	+	chr7:150784160-150789176;chr7:150784160-150785586;chr7:150784160-150813879	chr7:150784160-150801450		chr7:150785587-150789176;chr7:150789177-150801450;chr7:150801451-150813879	chr7:150789176-150789177;chr7:150801450-150801451;chr7:150813879-150813880		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.56	0.00	1.67	0.00	2.56	0.62	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	TTC9C	chr11	+	chr11:62496559-62502853	chr11:62496559-62500589;chr11:62500672-62502853		chr11:62500590-62500671			6.90	0.00	9.30	NA	12.50	NA	6.45	11.94	8.00	11.11	6.67	6.25	5.41	9.26	5.71	11.76	7.69	NA	0.00	14.29	8.00	NA	13.04	9.09	NA	11.90	10.00	14.29	8.33	5.88	4.76	3.03	10.00	7.69	8.33	0.00	5.41	10.58	5.17	0.054877	0.588062
K	intron_retention	ARAF	chrX	+	chrX:47430806-47430919				chrX:47430805-47430806;chrX:47430919-47430920		96.08	98.95	96.55	98.39	94.44	88.54	94.29	100.00	100.00	100.00	96.43	94.12	100.00	100.00	100.00	100.00	100.00	100.00	87.25	100.00	91.00	93.33	98.39	100.00	96.34	97.22	100.00	100.00	93.22	94.67	87.50	94.55	90.29	97.30	89.13	96.92	95.31	98.61	3.30	0.688452	1.000000
K	jcn_only_AD	KLC1	chr14	+	chr14:104145856-104153417;chr14:104151374-104153417	chr14:104145883-104153417					40.43	43.08	47.06	53.57	61.54	56.52	58.62	80.00	80.56	75.00	75.68	78.95	71.43	79.17	71.43	74.51	71.79	85.71	57.89	34.09	67.39	72.22	59.09	39.13	43.24	58.49	51.43	68.57	70.00	71.05	43.40	51.28	49.06	51.28	46.15	50.00	53.48	50.95	-2.53	0.831935	0.923322
K	alternative_acceptor	PITRM1	chr10	-	chr10:3185968-3186483;chr10:3185924-3186483	chr10:3185694-3186483		chr10:3185694-3185923;chr10:3185924-3185967	chr10:3185693-3185694;chr10:3185923-3185924		77.78	88.24	84.00	80.00	92.31	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	96.00	98.15	100.00	NA	86.67	100.00	88.24	83.33	84.31	NA	94.12	81.25	95.56	93.33	94.12	93.75	80.56	91.67	89.47	94.74	87.50	95.84	93.94	-1.90	0.542370	0.821842
K	alternative_donor	ABTB1	chr3	+	chr3:127392227-127393233;chr3:127392452-127393233	chr3:127391925-127393233		chr3:127391925-127392226;chr3:127392227-127392451	chr3:127391924-127391925;chr3:127392226-127392227		100.00	96.88	88.89	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.56	94.87	100.00	100.00	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	95.12	96.77	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	98.78	100.00	1.22	0.839856	0.954643
N	jcn_only_AD	SCN1B	chr19	+	chr19:35526916-35530020;chr19:35528259-35530020;chr19:35526051-35530020	chr19:35524644-35530020		chr19:35524644-35526050;chr19:35526051-35526915;chr19:35526916-35528258	chr19:35524643-35524644;chr19:35526050-35526051;chr19:35526915-35526916		98.75	100.00	97.22	94.29	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	100.00	100.00	93.88	100.00	100.00	100.00	100.00	100.00	99.13	92.68	100.00	96.67	96.43	95.28	100.00	100.00	100.00	96.67	100.00	100.00	0.00	0.231324	0.657607
K	alternative_donor	AC002398.9,LIN37	chr19	+	chr19:36244095-36244917	chr19:36244155-36244917		chr19:36244095-36244154	chr19:36244094-36244095		96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.56	100.00	96.30	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	95.00	100.00	100.00	0.00	0.550801	0.783048
N	alternative_acceptor	FAM49A	chr2	-	chr2:16740855-16742257	chr2:16741483-16742257		chr2:16740855-16741482	chr2:16740854-16740855		4.35	0.00	2.08	2.42	0.00	1.28	0.00	0.61	0.45	0.46	0.00	0.59	0.00	0.81	0.41	0.70	0.00	0.92	4.55	3.03	2.44	3.08	0.00	4.20	0.00	3.65	1.03	2.88	0.00	1.29	4.26	3.70	3.45	5.83	3.85	3.65	0.00	3.34	3.34	0.215975	0.671511
K	intron_retention	PCK2	chr14	+	chr14:24569423-24571961				chr14:24569422-24569423;chr14:24571961-24571962		9.68	0.00	0.00	NA	7.14	NA	2.86	1.15	1.14	5.00	0.00	0.00	2.73	0.00	3.23	0.00	7.14	6.25	10.34	6.00	4.41	0.00	8.16	0.00	12.00	6.87	5.13	14.29	7.55	0.00	6.94	4.76	0.00	10.00	5.13	3.23	2.79	6.44	3.64	0.514820	1.000000
K	alternative_acceptor	DPP7	chr9	-	chr9:140008831-140008914	chr9:140008835-140008914		chr9:140008831-140008834	chr9:140008830-140008831		87.10	89.02	83.33	73.91	80.00	73.33	90.68	87.50	94.00	97.10	91.59	91.55	88.50	88.00	90.74	85.71	86.00	94.00	82.76	96.00	89.74	81.58	83.16	85.71	90.20	94.12	89.80	86.79	89.23	89.13	86.84	89.19	85.71	82.54	83.75	82.14	88.76	87.75	-1.01	0.330757	0.709013
K	alternative_acceptor	ACOT8	chr20	-	chr20:44472361-44472901	chr20:44472412-44472901		chr20:44472361-44472411	chr20:44472360-44472361		11.11	14.29	18.75	NA	8.33	25.00	0.00	NA	10.00	0.00	5.88	10.00	3.85	9.09	13.33	NA	13.33	0.00	13.64	NA	10.26	NA	9.09	NA	12.24	16.67	18.75	NA	6.67	0.00	16.67	18.18	6.82	NA	8.33	15.38	9.53	13.89	4.36	0.148935	0.651394
K	jcn_only_AA	TRA2B	chr3	-	chr3:185636224-185637224	chr3:185636227-185637224		chr3:185636224-185636226	chr3:185636223-185636224		97.75	96.36	95.10	94.83	96.77	97.44	96.15	94.55	94.44	96.13	93.58	96.40	96.43	93.62	94.19	94.91	96.33	95.56	100.00	96.00	96.72	98.10	95.65	95.91	100.00	97.30	95.15	92.44	95.37	94.26	98.08	97.44	95.74	95.95	95.38	96.70	96.40	96.65	0.25	0.290537	0.663989
K	intron_retention	CAND1	chr12	+	chr12:67704097-67705472				chr12:67704096-67704097;chr12:67705472-67705473		10.81	11.54	7.94	6.67	0.00	NA	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	3.33	0.00	5.26	NA	4.35	4.17	0.00	2.86	2.50	0.00	6.06	0.00	4.88	2.08	8.16	0.00	0.00	0.00	0.662275	1.000000
K	alternative_donor	COX7C	chr5	+	chr5:85914148-85915169;chr5:85913948-85915169	chr5:85913871-85915169		chr5:85913871-85913947;chr5:85913948-85914147	chr5:85913870-85913871;chr5:85913947-85913948		11.08	15.85	10.16	12.72	13.84	14.07	11.68	9.13	10.75	13.54	10.60	10.61	12.01	13.83	10.44	14.89	13.76	10.86	13.18	14.62	10.92	15.82	15.96	12.68	15.59	10.47	12.39	13.39	16.60	12.66	15.50	14.13	15.36	12.70	13.10	11.41	14.27	12.46	-1.81	0.274928	0.645608
N	alternative_donor	KAT5	chr11	+	chr11:65484454-65486060	chr11:65484458-65486060		chr11:65484454-65484457	chr11:65484453-65484454		4.26	0.00	6.25	0.00	2.44	2.86	0.00	1.75	0.00	0.00	0.00	0.00	0.00	2.17	1.79	0.00	0.00	0.00	5.00	6.25	5.41	4.35	4.35	8.33	0.00	4.35	5.13	0.00	3.12	2.86	7.41	9.30	0.00	2.63	6.06	5.36	0.00	4.30	4.30	0.016681	0.264212
K	alternative_donor	EXOSC1	chr10	-	chr10:99197508-99198426	chr10:99197508-99198419		chr10:99198420-99198426	chr10:99198426-99198427		0.00	2.44	5.71	0.00	2.27	6.67	4.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	3.70	4.55	0.00	0.00	3.12	0.00	2.50	9.09	3.03	0.00	0.00	8.33	0.00	6.25	0.00	6.25	0.00	6.90	3.23	0.00	0.00	0.00	3.17	0.00	-3.17	0.422934	0.685207
K	cassette	UBE2I	chr16	+	chr16:1359775-1364020	chr16:1359775-1362347;chr16:1362605-1364020		chr16:1362348-1362604			2.70	4.44	2.94	4.76	2.38	NA	2.76	2.47	3.42	6.21	3.11	4.60	1.20	5.26	3.27	5.46	5.67	7.25	0.00	1.43	2.04	1.56	0.94	3.08	6.67	1.33	1.94	2.86	2.67	6.38	1.96	1.18	5.88	3.33	4.11	5.21	3.60	2.21	-1.39	0.454069	0.754902
K	jcn_only_AA	OS9	chr12	+	chr12:58089627-58089744;chr12:58089627-58110503	chr12:58089627-58112118					14.29	34.95	12.57	29.73	35.16	69.57	10.99	12.80	12.46	13.74	12.27	13.58	11.98	12.59	11.40	10.61	12.57	10.94	26.00	8.43	18.92	11.28	12.23	10.53	53.33	14.10	15.53	13.79	11.90	20.86	13.86	9.63	35.59	12.13	12.12	13.71	30.48	13.33	-17.15	0.057338	0.663989
K	alternative_acceptor	C7orf43	chr7	-	chr7:99753555-99754008;chr7:99753543-99754008	chr7:99753449-99754008		chr7:99753449-99753542;chr7:99753543-99753554	chr7:99753448-99753449;chr7:99753542-99753543		80.77	72.73	72.73	NA	68.18	NA	100.00	100.00	NA	NA	92.00	NA	95.83	91.67	100.00	100.00	92.11	NA	NA	80.00	79.17	NA	84.21	NA	NA	84.21	78.57	NA	65.00	NA	84.21	84.38	60.00	81.82	71.43	60.00	84.28	84.21	-0.07	0.667276	0.880186
K	intron_retention		chr19	-	chr19:47996751-47998806				chr19:47996750-47996751;chr19:47998806-47998807		0.58	10.53	1.59	0.00	1.37	0.00	0.00	0.00	0.00	0.29	0.00	0.22	0.00	0.00	0.00	0.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.32	3.45	0.00	0.00	0.00	0.78	0.00	0.54	0.93	0.00	0.64	1.16	0.65	0.00	0.00	0.00	0.518748	1.000000
K	intron_retention		chr10	-	chr10:111635358-111637547				chr10:111635357-111635358;chr10:111637547-111637548		0.00	0.00	8.82	NA	0.00	NA	0.00	1.72	5.77	0.00	0.00	2.27	0.00	0.00	3.90	0.00	1.37	0.00	NA	8.33	0.00	0.00	0.00	8.00	NA	4.00	6.25	0.00	0.00	0.00	0.00	5.88	0.00	7.14	0.00	7.14	0.00	0.86	0.86	0.426795	1.000000
N	alternative_donor		chr9	-	chr9:132590532-132591514	chr9:132590532-132591483		chr9:132591484-132591514	chr9:132591514-132591515		100.00	100.00	100.00	84.62	90.00	NA	100.00	91.67	100.00	92.86	91.43	90.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	NA	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.182530	0.563271
K	alternative_acceptor	APRT	chr16	-	chr16:88876115-88876477;chr16:88876316-88876477	chr16:88876249-88876477		chr16:88876115-88876248;chr16:88876249-88876315	chr16:88876114-88876115;chr16:88876248-88876249		81.25	71.05	85.71	63.20	70.59	74.03	80.11	100.00	88.68	70.27	66.00	70.79	73.81	84.62	84.06	68.67	64.74	69.74	67.64	75.00	74.32	67.21	70.37	69.81	67.69	72.73	79.49	71.83	73.83	72.00	78.57	86.67	69.67	62.50	73.33	76.58	70.36	79.91	9.55	0.050973	0.570243
K	intron_retention	TALDO1	chr11	+	chr11:763941-764287				chr11:763940-763941;chr11:764287-764288		38.71	46.75	50.00	36.99	58.62	28.75	NA	NA	NA	NA	NA	NA	9.09	NA	25.00	18.18	16.67	NA	29.52	35.71	38.98	34.15	47.17	33.33	69.32	35.00	45.83	44.00	54.55	44.44	54.90	51.92	65.00	35.19	34.00	26.83	46.75	37.21	-9.54	0.929502	1.000000
K	jcn_only_AA	PRPF3	chr1	+	chr1:150316738-150316909	chr1:150316738-150316851		chr1:150316852-150316909	chr1:150316909-150316910		5.56	0.00	9.62	11.11	0.00	0.00	0.00	2.70	3.64	0.00	2.78	3.06	0.00	2.78	2.56	2.27	2.04	0.94	14.29	9.30	7.69	2.44	2.86	8.86	NA	6.78	0.00	8.00	0.00	4.55	12.24	8.86	0.00	6.82	10.26	10.87	0.00	6.17	6.17	0.295446	0.663989
N	cassette	GMFG	chr19	-	chr19:39825951-39826613;chr19:39823767-39826613;chr19:39825946-39826613;chr19:39820267-39826613;chr19:39823767-39832150	chr19:39825946-39826074,chr19:39820267-39826074,chr19:39825951-39826074,chr19:39823767-39826074;chr19:39826172-39832150,chr19:39826172-39826613		chr19:39826075-39826171			92.92	87.50	90.37	91.07	89.46	91.00	97.93	97.12	97.22	95.79	96.36	97.57	98.51	98.35	97.96	98.37	97.77	99.24	90.18	94.78	95.85	92.93	92.73	95.28	93.12	97.83	91.59	93.28	94.98	95.17	85.71	91.21	89.40	89.47	90.52	90.38	91.65	95.95	4.30	0.547615	0.817416
N	alternative_acceptor	FCGR2A	chr1	+	chr1:161480747-161483684	chr1:161480747-161481555		chr1:161481556-161483684	chr1:161483684-161483685		3.77	4.08	4.76	4.35	0.00	4.76	0.56	0.24	0.00	0.24	0.00	0.26	0.48	0.34	0.00	0.54	0.00	0.54	8.33	2.74	1.64	10.00	3.45	13.12	6.25	1.72	2.59	1.49	1.22	1.00	3.06	4.58	7.14	6.98	3.81	11.14	5.17	2.23	-2.94	0.140725	0.640094
K	jcn_only_AA	WDR1	chr4	-	chr4:10089560-10089916	chr4:10089565-10089916		chr4:10089560-10089564	chr4:10089559-10089560		100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	98.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	99.44	100.00	99.41	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.60	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.419936	0.691465
K	intron_retention	DPP3	chr11	+	chr11:66262740-66262835				chr11:66262739-66262740;chr11:66262835-66262836		9.09	0.00	15.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	6.25	0.00	18.18	0.00	10.00	NA	0.00	7.69	NA	7.69	NA	11.11	12.00	7.14	4.35	3.33	0.00	0.00	3.12	3.12	0.918817	1.000000
K	intron_retention	PSMD3	chr17	+	chr17:38146047-38154046				chr17:38146046-38146047;chr17:38154046-38154047		72.16	69.58	86.08	72.22	75.42	70.59	78.95	75.00	77.27	79.31	70.73	60.71	77.91	79.03	76.25	78.12	73.91	100.00	69.27	76.56	67.35	68.89	70.37	85.19	71.43	77.32	72.60	71.43	71.08	68.63	74.16	77.27	72.82	80.00	62.34	74.14	72.12	75.78	3.66	0.166246	1.000000
K	intron_retention		chr1	-	chr1:84971985-84972118				chr1:84971984-84971985;chr1:84972118-84972119		5.88	12.50	8.57	9.68	16.67	12.50	6.45	13.56	10.00	25.00	21.88	19.72	14.81	16.46	16.67	15.28	22.22	20.00	NA	6.85	12.50	10.45	12.33	11.76	18.18	7.46	8.82	13.21	12.24	13.75	6.67	9.52	12.50	12.31	7.50	6.11	12.50	7.15	-5.35	0.370749	1.000000
N	alternative_acceptor	SUGP1	chr19	-	chr19:19391096-19407797	chr19:19391101-19407797		chr19:19391096-19391100	chr19:19391095-19391096		90.48	100.00	100.00	NA	90.48	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	alternative_donor	ABTB1	chr3	+	chr3:127393262-127393387	chr3:127393297-127393387		chr3:127393262-127393296	chr3:127393261-127393262		41.18	38.46	60.00	NA	40.00	NA	42.31	50.00	60.00	40.00	42.86	NA	44.00	45.00	50.00	50.00	60.00	NA	NA	50.00	NA	NA	47.62	30.00	26.67	55.56	38.10	NA	52.00	NA	50.00	60.00	NA	NA	NA	NA	40.39	50.00	9.61	0.062178	0.426976
K	jcn_only_AD	EIF2B5	chr3	+	chr3:183854464-183860024	chr3:183859859-183860024					95.24	100.00	97.37	NA	95.00	NA	100.00	NA	96.00	95.65	96.15	100.00	100.00	81.82	96.88	93.94	96.67	92.31	91.67	90.91	100.00	95.45	96.77	100.00	NA	100.00	97.30	95.24	100.00	94.74	100.00	96.30	100.00	94.12	97.22	100.00	100.00	95.24	-4.76	0.258130	0.657607
N	cassette	POLR2G	chr11	+	chr11:62529377-62532653	chr11:62529377-62530338;chr11:62530499-62532653		chr11:62530339-62530498			97.70	100.00	100.00	94.87	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.13	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	STXBP2	chr19	+	chr19:7710193-7711134				chr19:7710192-7710193;chr19:7711134-7711135		10.25	5.23	9.75	7.38	6.37	6.40	0.00	5.41	1.02	0.93	0.57	0.00	0.54	3.64	1.52	1.63	0.53	0.00	3.03	8.02	4.02	5.81	4.25	7.06	2.18	7.66	7.84	8.24	3.61	5.36	8.53	7.97	5.35	8.96	8.23	7.73	2.60	7.84	5.23	0.056190	1.000000
K	intron_retention	RNF167	chr17	+	chr17:4847934-4848009				chr17:4847933-4847934;chr17:4848009-4848010		5.56	5.56	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	1.79	4.35	5.56	0.00	3.17	0.00	3.23	0.00	0.00	2.78	2.47	1.23	14.29	12.50	7.14	0.00	2.50	3.77	2.51	2.17	-0.33	0.875140	1.000000
K	cassette	NAA20	chr20	+	chr20:20007564-20013745	chr20:20007564-20013151;chr20:20013298-20013745		chr20:20013152-20013297			96.92	100.00	100.00	90.91	90.91	NA	98.94	100.00	100.00	96.97	91.11	93.85	100.00	93.75	100.00	88.89	93.57	91.55	100.00	98.36	100.00	95.65	98.31	96.49	100.00	100.00	96.61	96.08	97.62	93.33	100.00	100.00	100.00	92.98	96.34	98.18	100.00	99.18	-0.82	0.168013	0.709176
K	cassette	CCNH	chr5	-	chr5:86697590-86703792	chr5:86697590-86700660;chr5:86700825-86703792		chr5:86700661-86700824			100.00	100.00	100.00	NA	100.00	NA	100.00	92.86	100.00	100.00	100.00	92.31	100.00	100.00	100.00	90.91	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	96.43	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.182038	0.709176
K	intron_retention		chr7	-	chr7:128034654-128034942				chr7:128034653-128034654;chr7:128034942-128034943		4.00	4.27	6.25	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	2.08	0.00	2.00	0.00	0.00	0.00	5.04	2.44	2.00	0.00	0.00	4.88	1.92	0.00	3.39	0.00	0.00	0.00	0.00	0.927678	1.000000
K	intron_retention	LMBR1L	chr12	-	chr12:49495333-49495902				chr12:49495332-49495333;chr12:49495902-49495903		8.11	5.71	2.38	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	1.82	0.00	NA	NA	NA	3.23	0.00	NA	0.00	NA	0.00	6.82	2.94	NA	0.00	0.00	2.70	4.00	0.00	0.00	4.55	0.00	0.00	2.96	2.96	0.582953	1.000000
N	jcn_only_AD	SNX8	chr7	-	chr7:2317941-2347362;chr7:2317941-2339235;chr7:2317941-2352038;chr7:2317941-2351251;chr7:2317941-2354303	chr7:2317941-2353962		chr7:2339236-2347362;chr7:2347363-2351251;chr7:2351252-2352038;chr7:2352039-2353962;chr7:2353963-2354303	chr7:2347362-2347363;chr7:2351251-2351252;chr7:2352038-2352039;chr7:2353962-2353963;chr7:2354303-2354304		100.00	100.00	100.00	100.00	100.00	NA	97.50	100.00	100.00	98.00	99.12	100.00	100.00	100.00	100.00	100.00	99.15	100.00	NA	100.00	100.00	100.00	97.06	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.00	100.00	100.00	0.00	0.373901	0.657607
K	intron_retention	NPEPL1,STX16-NPEPL1	chr20	+	chr20:57289727-57290223				chr20:57289726-57289727;chr20:57290223-57290224		9.68	6.78	16.00	0.00	4.29	4.44	0.00	0.00	0.00	NA	0.00	0.00	6.06	6.67	0.00	0.00	0.00	NA	2.91	8.33	8.33	0.00	5.88	7.14	2.35	10.53	6.82	0.00	6.25	4.35	11.11	7.69	5.15	0.00	8.70	6.45	4.03	9.00	4.97	0.433249	1.000000
N	alternative_acceptor		chr19	+	chr19:39964162-39964586;chr19:39964162-39964717	chr19:39964162-39964602		chr19:39964587-39964602;chr19:39964603-39964717	chr19:39964602-39964603;chr19:39964717-39964718		95.71	100.00	96.39	100.00	98.55	82.35	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	93.10	97.40	94.29	100.00	92.59	97.44	93.33	100.00	96.67	95.18	94.55	96.15	96.61	89.47	95.52	100.00	96.16	-3.84	0.083233	0.585944
N	cassette	DGUOK	chr2	+	chr2:74154180-74173845;chr2:74154180-74185272	chr2:74154180-74159724;chr2:74159811-74185272,chr2:74159811-74173845		chr2:74159725-74159810			3.77	0.00	4.11	3.45	4.11	0.00	0.00	4.17	5.13	0.00	0.00	0.00	0.00	7.69	8.57	0.00	3.70	0.00	0.00	7.69	2.13	0.00	4.35	0.00	5.00	3.12	1.92	0.00	2.86	0.00	5.00	7.27	2.00	0.00	7.69	3.85	0.00	4.58	4.58	0.005757	0.255099
K	alternative_first_exon	AREL1,RNASE1	chr14	-	chr14:21270253-21270413,chr14:21270253-21270929;chr14:21270253-21270955	chr14:21270253-21270407	chr14:21270956-21271437	chr14:21270408-21270565			13.32	17.17	11.05	22.01	23.08	26.78	37.60	31.53	26.98	28.43	28.53	28.66	31.13	26.83	17.35	34.61	22.33	24.56	16.38	15.60	25.29	17.75	18.49	16.88	30.49	25.87	15.43	34.48	35.14	36.22	16.26	13.11	17.40	20.95	21.64	21.24	23.95	21.07	-2.88	0.489997	0.632025
N	jcn_only_AA	PHRF1	chr11	+	chr11:610348-610596;chr11:610348-610500	chr11:610348-610666		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		0.00	4.55	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	5.00	NA	0.00	0.00	0.00	0.00	0.00	6.90	4.00	4.35	0.00	9.38	4.55	4.35	0.00	-4.35	0.588991	0.810544
K	intron_retention	ACTG1	chr17	-	chr17:79477356-79477505				chr17:79477355-79477356;chr17:79477505-79477506		93.57	95.17	93.58	93.96	93.55	95.78	94.07	92.02	94.02	82.09	85.85	84.04	93.09	92.53	93.02	94.33	81.34	80.73	94.88	92.95	94.06	90.58	89.81	86.29	97.19	93.79	93.47	88.37	89.80	90.38	93.63	92.41	95.22	89.56	91.69	90.70	95.03	93.26	-1.77	0.199243	1.000000
K	intron_retention	TMEM115	chr3	-	chr3:50392979-50395643				chr3:50392978-50392979;chr3:50395643-50395644		5.00	0.00	1.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	4.11	2.25	0.00	1.45	0.00	0.00	2.50	0.00	0.00	0.00	0.00	10.34	1.75	2.08	0.00	3.08	1.08	0.00	3.31	3.31	0.387277	1.000000
K	intron_retention		chr1	+	chr1:22970380-22970503				chr1:22970379-22970380;chr1:22970503-22970504		16.67	38.89	NA	NA	NA	NA	4.55	5.56	NA	NA	NA	NA	8.82	4.17	7.69	0.00	12.50	NA	NA	30.00	NA	NA	NA	NA	45.45	20.00	NA	NA	20.00	NA	NA	NA	NA	NA	NA	NA	23.86	16.67	-7.18	0.722587	1.000000
N	alternative_donor		chr19	-	chr19:6375628-6380295	chr19:6375628-6375712		chr19:6375713-6380295	chr19:6380295-6380296		77.50	70.21	100.00	100.00	91.67	91.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	76.47	89.66	80.65	100.00	92.59	100.00	79.55	94.12	100.00	100.00	100.00	100.00	100.00	83.33	70.73	100.00	100.00	100.00	78.01	97.06	19.05	0.145436	0.560769
K	alternative_donor	RPL38	chr17	+	chr17:72199885-72200056;chr17:72199910-72200056	chr17:72199850-72200056		chr17:72199850-72199884;chr17:72199885-72199909	chr17:72199849-72199850;chr17:72199884-72199885		27.27	30.93	29.73	26.95	24.84	27.76	29.66	35.37	28.78	38.07	40.62	40.00	30.16	25.97	27.46	27.13	39.50	38.10	22.14	24.32	23.58	24.23	19.80	25.63	29.29	24.59	30.26	24.35	19.01	21.43	20.77	23.03	25.23	24.26	28.42	23.31	29.48	25.28	-4.20	0.550693	0.783048
N	intron_retention		chr2	-	chr2:85625276-85626258				chr2:85625275-85625276;chr2:85626258-85626259		20.00	0.00	12.00	2.86	12.20	1.45	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10.00	17.39	12.50	0.00	11.11	4.76	0.00	15.79	18.18	7.14	15.00	4.55	13.33	20.00	10.34	5.88	13.64	2.22	5.00	16.59	11.59	0.086446	1.000000
N	alternative_acceptor		chr2	+	chr2:61413633-61413793;chr2:61413633-61415043	chr2:61413633-61413751		chr2:61413752-61413793;chr2:61413794-61415043	chr2:61413793-61413794;chr2:61415043-61415044		96.15	98.28	97.44	96.88	95.92	98.08	NA	NA	NA	NA	NA	NA	81.82	NA	NA	NA	NA	NA	94.83	94.44	97.73	92.31	96.77	92.86	100.00	100.00	97.44	100.00	100.00	100.00	95.83	97.50	98.39	92.00	100.00	82.61	98.28	95.99	-2.29	0.605843	0.848883
N	alternative_acceptor	AURKAIP1	chr1	-	chr1:1309738-1310084;chr1:1309826-1310084;chr1:1309742-1310084	chr1:1309971-1310084		chr1:1309738-1309741;chr1:1309742-1309825;chr1:1309826-1309970	chr1:1309737-1309738;chr1:1309741-1309742;chr1:1309825-1309826		4.84	2.79	3.80	4.41	4.88	5.06	9.52	5.13	5.88	7.14	5.88	6.67	0.95	0.00	1.89	1.11	1.22	0.00	3.77	3.64	3.08	10.00	5.77	10.71	5.38	2.50	4.11	4.65	4.00	10.00	8.97	8.43	6.80	6.38	6.56	6.67	4.58	4.24	-0.33	0.701569	0.887511
K	intron_retention		chr12	+	chr12:57574263-57574449				chr12:57574262-57574263;chr12:57574449-57574450		0.00	11.29	4.35	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	NA	0.00	4.00	0.00	12.12	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	4.54	0.00	-4.54	0.431372	1.000000
K	intron_retention	ATP2C1	chr3	+	chr3:130720159-130734995				chr3:130720158-130720159;chr3:130734995-130734996		70.00	73.53	83.33	44.23	64.52	38.24	87.50	78.18	70.97	86.27	89.19	86.25	67.57	78.79	78.57	83.33	91.67	87.67	52.63	62.50	66.67	69.12	76.19	61.32	31.58	65.00	60.34	73.33	69.05	54.88	65.57	80.65	58.33	74.03	72.84	59.52	62.95	67.78	4.84	0.552391	1.000000
K	intron_retention	CSNK2B,XXbac-BPG32J3.22	chr6	+	chr6:31636432-31636873				chr6:31636431-31636432;chr6:31636873-31636874		3.72	2.32	5.21	1.32	0.85	0.66	0.00	0.00	0.76	0.00	0.38	0.00	0.82	0.46	0.57	0.34	0.00	0.00	1.46	3.90	0.90	5.00	1.51	3.70	1.69	1.04	2.42	1.12	0.63	0.69	6.67	8.55	3.38	2.27	2.46	2.45	1.57	2.38	0.80	0.756947	1.000000
N	jcn_only_AA	IRF3	chr19	-	chr19:50166496-50166599	chr19:50166516-50166599		chr19:50166496-50166515	chr19:50166495-50166496		92.86	100.00	98.41	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	jcn_only_AA	IRF8	chr16	+	chr16:85942780-85943092;chr16:85942780-85945175	chr16:85942780-85943089		chr16:85943090-85943092;chr16:85943093-85945175	chr16:85943092-85943093;chr16:85945175-85945176		0.00	0.00	0.00	NA	NA	62.50	0.00	2.86	0.00	8.96	1.80	4.01	1.33	0.00	1.40	3.00	2.55	1.37	NA	0.00	NA	3.70	1.72	2.76	46.67	0.00	0.00	14.29	12.50	5.41	0.00	4.08	NA	0.00	5.80	2.35	0.67	0.00	-0.67	0.392475	0.664463
K	intron_retention	ANKRD13D	chr11	+	chr11:67057918-67058946				chr11:67057917-67057918;chr11:67058946-67058947		8.57	18.18	11.54	NA	11.11	NA	3.70	0.00	0.00	NA	0.00	NA	6.25	0.00	0.00	NA	4.76	NA	40.00	8.33	9.09	NA	11.54	NA	46.67	0.00	7.69	NA	5.56	NA	7.69	11.11	37.93	NA	12.90	NA	28.05	3.85	-24.21	0.699141	1.000000
K	intron_retention	MCM5	chr22	+	chr22:35819335-35820146				chr22:35819334-35819335;chr22:35820146-35820147		9.09	2.86	3.03	NA	4.44	4.55	0.00	0.00	0.00	3.12	0.00	0.00	1.61	0.00	2.86	0.00	1.83	0.00	2.82	6.67	2.82	NA	5.26	NA	0.00	NA	0.00	0.00	2.94	9.09	10.00	0.00	1.89	9.09	0.00	0.00	1.75	6.67	4.92	0.813356	1.000000
N	alternative_donor	VPS16	chr20	+	chr20:2844730-2844824	chr20:2844732-2844824		chr20:2844730-2844731	chr20:2844729-2844730		6.06	16.67	7.50	NA	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	2.94	0.00	NA	0.00	8.00	8.33	6.90	0.00	NA	0.00	3.45	NA	0.00	0.00	0.00	5.26	7.69	4.00	3.57	8.11	3.85	0.00	-3.85	0.293320	0.650093
N	jcn_only_AD	NUBP1	chr16	+	chr16:10855269-10855613	chr16:10855332-10855613		chr16:10855269-10855331	chr16:10855268-10855269		100.00	96.72	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.257309	0.657607
N	alternative_acceptor	NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236380;chr1:41235088-41236068	chr1:41235088-41236383		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		0.00	6.06	0.00	15.79	5.26	0.00	12.90	0.00	13.64	7.50	7.27	15.38	14.29	12.50	9.09	10.87	5.26	5.00	0.00	15.38	0.00	5.26	9.62	13.64	27.27	0.00	6.45	18.52	7.69	7.14	10.34	14.29	11.54	6.06	2.63	4.76	12.22	5.17	-7.05	0.263435	0.709013
K	intron_retention	CYB5R1	chr1	-	chr1:202935122-202935655				chr1:202935121-202935122;chr1:202935655-202935656		0.00	0.00	2.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	3.70	3.64	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.00	5.56	0.00	6.52	0.00	0.00	0.00	0.00	0.831616	1.000000
K	intron_retention		chr16	+	chr16:31141928-31142066				chr16:31141927-31141928;chr16:31142066-31142067		3.03	4.65	10.00	10.00	10.00	3.57	0.00	0.00	0.00	0.00	6.90	NA	3.03	0.00	0.00	0.00	0.00	NA	5.48	9.52	7.14	14.29	10.87	0.00	4.69	4.55	4.35	6.25	9.09	9.09	6.25	4.23	7.69	4.00	5.88	13.33	4.67	3.79	-0.88	0.560164	1.000000
K	jcn_only_AA	PLEKHM1	chr17	-	chr17:43516944-43517528	chr17:43517001-43517528		chr17:43516944-43517000	chr17:43516943-43516944		91.89	100.00	94.34	NA	90.91	NA	100.00	100.00	100.00	96.97	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.08	95.83	100.00	100.00	100.00	95.00	100.00	NA	100.00	100.00	90.91	100.00	95.35	93.18	100.00	100.00	0.00	0.937489	0.979703
K	jcn_only_AA	AC137934.1,PPP4C	chr16	+	chr16:30087797-30092579	chr16:30087797-30092520		chr16:30092521-30092579	chr16:30092579-30092580		6.90	0.00	4.76	0.00	1.89	3.57	0.00	2.80	1.04	2.26	2.79	1.89	3.18	4.17	1.00	2.99	1.17	0.00	5.88	5.15	6.67	4.00	4.85	1.20	3.23	4.44	4.07	4.00	3.45	2.70	6.38	8.46	5.26	2.73	6.73	5.22	3.21	4.79	1.59	0.123902	0.663989
K	intron_retention	TNK2	chr3	-	chr3:195593888-195594039				chr3:195593887-195593888;chr3:195594039-195594040		4.20	4.17	6.67	NA	2.78	0.00	0.00	1.49	0.00	NA	0.00	NA	0.00	1.14	0.00	NA	0.00	NA	3.33	2.27	5.41	NA	0.00	0.00	7.41	2.11	0.00	0.00	3.03	0.00	2.53	0.00	6.12	0.00	20.00	2.63	3.75	2.19	-1.56	0.790866	1.000000
K	intron_retention		chr2	+	chr2:242590751-242592926				chr2:242590750-242590751;chr2:242592926-242592927		0.00	0.00	8.57	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.00	NA	NA	10.53	0.00	0.00	0.00	NA	11.11	11.76	3.57	0.00	6.67	NA	5.88	2.38	0.00	9.09	0.00	17.24	0.00	2.94	2.94	0.862438	1.000000
K	intron_retention	ATG16L2	chr11	+	chr11:72539554-72539773				chr11:72539553-72539554;chr11:72539773-72539774		12.50	16.02	22.37	10.00	9.68	3.45	0.00	NA	NA	NA	NA	NA	0.00	NA	9.09	NA	NA	NA	9.59	18.52	10.81	7.69	8.33	7.14	5.94	20.83	21.05	10.00	6.12	NA	27.59	21.84	18.38	19.05	13.73	18.18	7.77	19.67	11.91	0.191299	1.000000
N	cassette	PLA2G7	chr6	-	chr6:46680075-46702916;chr6:46680075-46684711;chr6:46680075-46703354;chr6:46680075-46684120	chr6:46680075-46682196;chr6:46682291-46684120,chr6:46682291-46702916,chr6:46682291-46703354,chr6:46682291-46684711		chr6:46682197-46682290			98.26	96.43	99.02	100.00	96.47	NA	97.77	98.35	99.53	91.14	93.92	95.80	100.00	99.62	100.00	92.68	93.23	95.95	100.00	100.00	100.00	99.04	97.13	100.00	NA	99.05	98.54	96.26	99.39	100.00	97.80	98.67	100.00	98.34	97.91	97.44	100.00	98.70	-1.30	0.993783	0.998132
K	intron_retention	ARHGAP9	chr12	-	chr12:57869399-57869615				chr12:57869398-57869399;chr12:57869615-57869616		18.18	19.70	22.50	NA	13.04	NA	2.04	0.00	NA	0.00	0.00	NA	1.11	NA	NA	NA	1.59	NA	10.34	10.00	14.29	NA	16.67	NA	15.79	0.00	10.00	NA	15.38	NA	NA	17.65	8.33	8.33	12.50	9.09	9.34	5.00	-4.34	0.950589	1.000000
N	alternative_donor	RYK,TPRA1	chr3	-	chr3:127294894-127295451;chr3:127294894-127295459	chr3:127294894-127295027		chr3:127295028-127295451;chr3:127295452-127295459	chr3:127295451-127295452;chr3:127295459-127295460		5.56	5.45	9.30	7.14	2.08	0.00	2.78	0.00	0.00	0.87	1.18	0.63	2.86	2.25	2.04	2.77	2.29	2.42	4.00	4.55	4.00	5.93	6.48	6.93	4.76	5.36	4.88	4.76	6.67	5.05	6.41	8.57	6.25	6.25	6.38	5.56	4.38	4.96	0.58	0.781372	0.919586
N	cassette	GSTP1	chr11	+	chr11:67351316-67351934;chr11:67351316-67352155	chr11:67351316-67351604;chr11:67351641-67352155,chr11:67351641-67351934		chr11:67351605-67351640			100.00	96.35	100.00	97.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.22	100.00	95.35	98.96	100.00	100.00	100.00	97.83	94.15	100.00	97.84	100.00	98.17	100.00	1.83	0.083139	0.641134
K	cassette	GUK1	chr1	+	chr1:228328065-228333211	chr1:228328065-228328824;chr1:228328990-228333211		chr1:228328825-228328989			6.82	6.40	2.96	7.04	10.26	4.44	17.14	12.12	11.28	16.06	17.37	16.48	16.22	8.87	11.04	9.20	15.57	14.86	4.03	6.86	7.83	9.38	5.36	11.32	7.32	9.56	5.79	10.59	11.29	8.96	6.51	6.55	5.08	13.13	9.91	7.55	6.86	7.87	1.00	0.730488	0.905819
N	cassette	TMEM14B	chr6	+	chr6:10749932-10770309;chr6:10749502-10755374;chr6:10749502-10770309;chr6:10749502-10756699;chr6:10749932-10829239;chr6:10749932-10756699;chr6:10749932-10755374	chr6:10749932-10751365,chr6:10749502-10751365;chr6:10751468-10755374,chr6:10751468-10770309,chr6:10751468-10829239,chr6:10751468-10756699		chr6:10751366-10751467			67.86	72.50	86.11	71.43	78.26	NA	86.61	89.47	85.37	87.93	91.18	91.84	86.55	79.17	89.13	82.22	91.95	90.70	77.27	82.61	80.65	86.67	74.68	92.11	26.67	100.00	76.32	83.33	83.05	86.21	90.91	72.73	80.95	86.05	86.00	83.87	79.11	86.04	6.93	0.239272	0.709176
K	alternative_donor	HERPUD1	chr16	+	chr16:56974001-56976043	chr16:56974158-56976043		chr16:56974001-56974157	chr16:56974000-56974001		100.00	100.00	100.00	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	96.77	98.72	100.00	100.00	100.00	0.00	0.363217	0.650093
N	jcn_only_AA	NDUFS4	chr5	+	chr5:96251474-96267335	chr5:96251474-96253165		chr5:96253166-96267335	chr5:96267335-96267336		NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	NA	NA	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	PBX2	chr6	-	chr6:32154252-32154380				chr6:32154251-32154252;chr6:32154380-32154381		14.29	NA	18.18	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.55	NA	0.00	0.00	NA	0.00	14.29	NA	10.00	NA	0.00	0.00	10.34	NA	0.00	0.00	0.00	9.09	0.00	NA	14.29	7.69	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	NFE2L1	chr17	+	chr17:46128182-46128478				chr17:46128181-46128182;chr17:46128478-46128479		100.00	100.00	96.70	NA	NA	NA	95.54	92.63	89.38	92.73	98.04	100.00	97.46	94.87	96.37	98.84	100.00	94.74	NA	100.00	NA	100.00	97.83	95.45	100.00	97.78	98.36	92.86	100.00	NA	93.10	97.87	NA	100.00	100.00	97.78	98.73	96.33	-2.40	0.532937	1.000000
K	alternative_acceptor	TRAPPC12	chr2	+	chr2:3469467-3481465	chr2:3469467-3481462		chr2:3481463-3481465	chr2:3481465-3481466		5.88	0.00	12.50	NA	0.00	NA	0.00	NA	0.00	10.00	7.14	NA	2.86	0.00	0.00	0.00	5.56	NA	0.00	0.00	4.17	NA	7.14	NA	0.00	9.52	9.52	16.67	3.45	10.00	6.25	6.67	0.00	12.50	3.85	10.00	0.00	5.88	5.88	0.109479	0.600590
N	alternative_donor	DPM1,SLC23A2	chr20	-	chr20:49565200-49571722	chr20:49565200-49567700		chr20:49567701-49571722	chr20:49571722-49571723		4.17	4.55	6.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	4.88	1.75	6.25	NA	4.35	2.27	0.00	0.00	0.00	4.55	4.17	0.00	4.41	3.92	8.33	0.00	4.17	4.17	0.161957	0.563271
K	intron_retention	SRSF7	chr2	-	chr2:38973890-38975188				chr2:38973889-38973890;chr2:38975188-38975189		0.94	3.38	4.04	0.00	2.65	4.00	0.00	3.06	0.00	0.74	2.38	0.00	3.03	4.41	3.57	1.47	2.66	0.00	2.41	2.90	2.75	2.88	3.73	5.19	3.42	4.52	1.37	3.70	3.12	1.25	7.44	6.48	4.00	6.03	5.36	6.67	3.21	3.74	0.53	0.624730	1.000000
K	intron_retention	GMPPA	chr2	+	chr2:220371145-220371419				chr2:220371144-220371145;chr2:220371419-220371420		3.70	3.47	7.14	6.56	4.24	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	1.79	4.17	1.64	10.00	1.75	2.38	1.12	5.13	5.17	0.00	1.96	2.47	3.17	5.08	3.57	2.50	0.00	3.45	1.46	3.44	1.98	0.842135	1.000000
K	alternative_donor	RPL13A	chr19	+	chr19:49993170-49993488;chr19:49993348-49993488	chr19:49993180-49993488		chr19:49993170-49993179;chr19:49993180-49993347	chr19:49993169-49993170;chr19:49993179-49993180		96.91	97.20	97.06	98.57	97.50	98.58	98.69	97.04	97.76	99.06	98.87	99.45	99.13	98.48	97.09	99.15	98.77	99.54	98.31	97.91	97.51	96.87	97.90	97.58	96.83	97.66	96.12	98.43	98.06	98.62	94.62	94.31	96.84	98.72	98.79	98.45	97.75	97.35	-0.41	0.313994	0.650093
N	jcn_only_AA		chr10	+	chr10:104181265-104181843;chr10:104181265-104181870	chr10:104181265-104181543		chr10:104181544-104181843;chr10:104181844-104181870	chr10:104181843-104181844;chr10:104181870-104181871		100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	97.37	100.00	100.00	NA	100.00	100.00	94.83	90.00	90.00	NA	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor		chr11	+	chr11:67051421-67051744;chr11:67051421-67051747;chr11:67051421-67051735	chr11:67051421-67051681		chr11:67051682-67051735;chr11:67051736-67051744;chr11:67051745-67051747	chr11:67051735-67051736;chr11:67051744-67051745;chr11:67051747-67051748		91.25	95.74	94.57	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	99.04	NA	96.88	92.98	100.00	100.00	95.71	92.31	100.00	97.06	94.31	NA	98.39	NA	100.00	94.57	93.62	100.00	96.08	100.00	97.66	98.53	0.87	0.773013	0.915715
N	jcn_only_AA		chrX	+	chrX:117910475-117914480;chrX:117910475-117925052;chrX:117910475-117938894	chrX:117910475-117925724		chrX:117914481-117925052;chrX:117925053-117925724;chrX:117925725-117938894	chrX:117925052-117925053;chrX:117925724-117925725;chrX:117938894-117938895		95.83	88.78	96.24	100.00	96.55	96.72	98.23	96.61	99.47	97.44	97.73	100.00	98.00	100.00	98.62	100.00	99.20	100.00	87.84	98.74	94.67	100.00	97.96	100.00	86.84	95.21	97.06	95.35	100.00	96.49	95.93	97.72	94.55	97.14	97.98	98.00	91.66	96.27	4.61	0.081101	0.663989
N	alternative_acceptor	MADD,REXO2	chr11	+	chr11:47336879-47345091;chr11:47336879-47345221	chr11:47336879-47343361		chr11:47343362-47345091;chr11:47345092-47345221	chr11:47345091-47345092;chr11:47345221-47345222		1.89	0.00	1.49	NA	0.00	NA	0.00	3.03	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.70	NA	NA	0.00	0.00	0.00	1.92	0.00	6.25	2.70	2.56	0.00	0.00	NA	1.64	1.43	0.00	2.22	2.33	3.23	0.00	1.76	1.76	0.836856	0.941462
N	alternative_acceptor	HMHA1	chr19	+	chr19:1083066-1083160;chr19:1083066-1083274;chr19:1083066-1083151	chr19:1083066-1083141		chr19:1083142-1083151;chr19:1083152-1083160;chr19:1083161-1083274	chr19:1083151-1083152;chr19:1083160-1083161;chr19:1083274-1083275		68.97	90.20	75.00	NA	82.05	83.33	100.00	100.00	84.62	68.75	68.42	NA	85.19	80.00	84.48	100.00	72.97	NA	81.58	84.62	80.00	91.67	83.64	76.92	100.00	64.29	94.74	NA	82.14	92.31	86.67	95.65	69.57	92.86	100.00	90.00	87.69	82.31	-5.38	0.347730	0.709013
K	intron_retention	TAPBPL	chr12	+	chr12:6561479-6562232				chr12:6561478-6561479;chr12:6562232-6562233		0.00	9.52	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.26	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.612201	1.000000
N	intron_retention		chr17	+	chr17:7464190-7464315				chr17:7464189-7464190;chr17:7464315-7464316		95.69	100.00	100.00	100.00	96.25	100.00	100.00	100.00	100.00	100.00	98.17	97.06	96.84	93.59	100.00	95.00	95.89	100.00	97.30	95.18	100.00	100.00	100.00	100.00	100.00	96.55	96.67	91.67	95.90	96.77	100.00	100.00	100.00	100.00	97.14	97.44	100.00	96.12	-3.88	0.228425	1.000000
N	alternative_acceptor	APOBEC3G	chr22	+	chr22:39483132-39483411	chr22:39483132-39483344		chr22:39483345-39483411	chr22:39483411-39483412		1.76	0.00	0.00	NA	0.00	1.63	0.00	0.58	0.90	0.00	0.00	0.00	0.00	0.00	0.98	0.00	NA	0.00	2.56	1.34	1.33	NA	0.00	0.00	0.00	1.00	2.44	3.23	0.00	1.30	1.58	1.74	0.00	0.00	6.25	1.77	0.00	1.17	1.17	0.255130	0.709013
K	intron_retention	UPP1	chr7	+	chr7:48143009-48146469				chr7:48143008-48143009;chr7:48146469-48146470		11.16	20.00	18.54	9.05	8.16	7.87	0.00	0.00	0.00	0.77	0.00	0.45	0.00	2.44	4.88	1.36	0.00	0.65	9.52	8.45	10.47	8.33	7.32	10.48	6.06	11.93	13.53	13.59	8.25	9.41	13.13	18.75	5.71	16.22	7.69	10.32	5.88	9.80	3.92	0.842537	1.000000
N	alternative_donor	LILRB4	chr19	+	chr19:55178201-55179088	chr19:55178519-55179088		chr19:55178201-55178518	chr19:55178200-55178201		11.23	10.47	8.38	6.83	6.25	11.11	2.00	4.00	3.99	2.54	1.06	2.94	2.59	5.27	6.74	4.94	2.06	3.61	10.38	13.45	6.61	17.15	15.34	19.32	5.88	10.08	10.40	13.21	6.13	10.29	7.79	8.83	5.10	13.98	9.76	15.06	5.49	8.94	3.45	0.251016	0.623168
N	jcn_only_AA	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407084-4407386;chr11:4407110-4407386;chr11:4406413-4407386	chr11:4407141-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		1.69	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	1.49	0.00	0.00	0.00	1.16	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.41	0.00	NA	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.58	0.58	0.086203	0.663989
N	alternative_donor	RAD23A	chr19	+	chr19:13059628-13059894	chr19:13059633-13059894		chr19:13059628-13059632	chr19:13059627-13059628		4.00	3.06	3.03	2.08	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.67	0.00	0.00	2.13	1.72	1.54	3.17	2.63	2.17	0.00	1.39	4.03	2.86	2.27	2.00	6.25	4.88	0.00	2.41	3.09	2.15	0.34	1.55	1.21	0.306454	0.650093
N	alternative_last_exon	ARHGAP22	chr10	-	chr10:49638626-49661346,chr10:49659651-49661346;chr10:49654663-49661346	chr10:49659184-49661346	chr10:49654077-49654662	chr10:49658304-49659183			75.00	91.76	NA	95.65	98.99	90.91	97.30	NA	NA	90.00	97.62	92.31	94.83	90.00	NA	94.59	98.21	100.00	83.67	85.71	NA	86.21	96.12	95.65	97.22	93.75	NA	96.15	93.20	91.67	90.91	NA	94.59	90.32	94.00	94.44	94.71	90.00	-4.71	0.157705	0.368970
K	cassette	FCGR2A	chr1	+	chr1:161479865-161483684	chr1:161479865-161480623;chr1:161480747-161483684		chr1:161480624-161480746			94.24	95.12	97.49	93.55	92.86	96.00	69.64	77.44	77.57	77.03	64.24	82.07	68.61	73.53	75.45	76.33	57.45	73.94	100.00	93.00	83.54	92.37	93.62	96.43	78.95	95.11	94.62	95.74	89.42	95.91	92.04	90.17	93.33	83.80	82.40	90.29	86.14	92.52	6.38	0.640461	0.868138
N	cassette	SERPINB6	chr6	-	chr6:2959577-2971724;chr6:2955905-2971350;chr6:2959577-2971350;chr6:2959577-2971766	chr6:2959577-2969012,chr6:2955905-2969012;chr6:2969148-2971724,chr6:2969148-2971350,chr6:2969148-2971766		chr6:2969013-2969147			4.92	2.82	2.63	0.00	0.00	NA	1.79	0.00	0.00	0.00	1.33	2.63	1.87	1.43	2.78	5.00	3.77	4.00	5.56	4.55	0.00	3.45	1.64	6.67	3.23	1.61	6.15	0.00	1.49	0.00	0.00	7.69	4.00	2.70	3.45	7.55	3.02	1.52	-1.50	0.315742	0.709176
N	jcn_only_AA	ANKH	chr5	-	chr5:14711411-14712982;chr5:14711420-14712982	chr5:14711414-14712982		chr5:14711411-14711413;chr5:14711414-14711419	chr5:14711410-14711411;chr5:14711413-14711414		0.00	0.00	0.00	0.00	0.78	0.00	1.64	0.00	NA	0.00	0.87	0.00	1.78	9.09	NA	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.81	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	2.06	0.00	0.00	0.00	0.82	0.00	-0.82	0.595192	0.812401
N	alternative_donor	ABCC3	chr17	+	chr17:48756936-48757158;chr17:48755581-48757158	chr17:48755956-48757158		chr17:48755581-48755955;chr17:48755956-48756935	chr17:48755580-48755581;chr17:48755955-48755956		0.00	0.00	0.72	NA	0.00	NA	0.00	8.33	NA	0.00	0.00	0.00	4.55	NA	0.00	0.00	5.26	NA	0.00	5.26	0.00	0.00	1.43	0.00	13.33	0.00	2.22	0.00	0.00	0.00	0.00	1.30	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.927543	0.984606
K	alternative_acceptor	SCN1B	chr19	+	chr19:35523599-35524615	chr19:35523599-35524402		chr19:35524403-35524615	chr19:35524615-35524616		82.89	89.66	87.01	85.19	100.00	100.00	100.00	92.31	91.23	88.89	100.00	100.00	90.62	90.48	83.93	89.55	100.00	95.24	76.47	90.91	86.67	85.00	90.00	89.58	NA	87.67	87.90	91.67	86.05	92.98	90.74	92.04	87.50	100.00	87.88	90.12	89.66	90.61	0.95	0.940131	0.984632
K	intron_retention	NUDT16	chr3	+	chr3:131101160-131102005				chr3:131101159-131101160;chr3:131102005-131102006		6.25	1.33	10.00	11.90	0.00	7.69	0.00	0.00	0.00	0.00	7.14	0.00	1.82	4.35	4.00	3.45	0.00	4.55	5.08	15.38	7.69	12.50	23.08	20.59	2.00	NA	12.00	9.52	0.00	8.11	NA	12.00	11.86	NA	10.00	10.00	1.91	5.30	3.39	0.840475	1.000000
N	jcn_only_AD	AHNAK	chr11	-	chr11:62259304-62284481;chr11:62259304-62301132	chr11:62259304-62302474		chr11:62284482-62301132;chr11:62301133-62302474	chr11:62301132-62301133;chr11:62302474-62302475		100.00	100.00	NA	98.48	99.31	98.36	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	97.73	100.00	94.79	100.00	NA	100.00	98.11	100.00	100.00	NA	98.59	100.00	100.00	100.00	100.00	100.00	0.00	0.252376	0.657607
N	jcn_only_AA	ZFYVE27	chr10	+	chr10:99517481-99517624;chr10:99517481-99518784	chr10:99517481-99518992		chr10:99517625-99518784;chr10:99518785-99518992	chr10:99518784-99518785;chr10:99518992-99518993		100.00	100.00	97.78	NA	100.00	NA	100.00	100.00	92.31	100.00	86.36	NA	90.91	100.00	96.30	100.00	100.00	NA	NA	100.00	90.00	100.00	100.00	100.00	100.00	90.00	100.00	NA	100.00	NA	94.12	97.30	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.900407	0.966004
N	alternative_donor	RPP30	chr10	+	chr10:92635856-92638819	chr10:92636118-92638819		chr10:92635856-92636117	chr10:92635855-92635856		0.00	6.25	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
K	alternative_last_exon	TCAIM	chr3	+	chr3:44399369-44402856	chr3:44399369-44399708	chr3:44402857-44403010	chr3:44399709-44401296			86.67	100.00	70.00	NA	100.00	100.00	69.23	66.67	71.43	76.47	71.43	86.67	69.77	83.33	71.43	93.33	76.32	83.33	100.00	90.00	100.00	NA	94.12	NA	80.95	90.00	82.35	NA	100.00	NA	NA	85.71	100.00	85.71	93.75	82.35	90.47	86.67	-3.80	0.671718	0.793267
N	jcn_only_AA	COL23A1	chr5	-	chr5:177666181-177669042	chr5:177667540-177669042		chr5:177666181-177667539	chr5:177666180-177666181		11.76	11.90	NA	NA	0.00	36.36	0.00	NA	NA	0.00	8.33	0.00	0.00	NA	NA	0.00	0.00	0.00	13.51	0.00	NA	0.00	7.14	0.00	0.00	0.00	NA	0.00	6.25	4.00	9.52	0.00	10.34	12.50	7.89	5.13	5.17	4.76	-0.41	0.881099	0.955274
N	alternative_acceptor	CASP4	chr11	-	chr11:104813701-104815474	chr11:104814135-104815474		chr11:104813701-104814134	chr11:104813700-104813701		10.42	11.15	11.47	12.06	8.05	6.78	1.54	0.99	0.52	0.71	1.16	0.48	1.72	0.73	3.18	1.90	1.27	1.23	9.95	6.91	8.96	14.29	14.29	10.21	8.72	5.87	11.36	10.47	9.62	6.27	7.37	11.07	7.84	15.38	11.11	10.53	8.28	6.39	-1.89	0.547357	0.823478
N	alternative_acceptor	GRN,PRKAR1A	chr17	+	chr17:42429940-42430083;chr17:42429940-42430087	chr17:42429940-42430028		chr17:42430029-42430083;chr17:42430084-42430087	chr17:42430083-42430084;chr17:42430087-42430088		100.00	89.89	100.00	91.61	91.81	90.51	100.00	92.08	100.00	90.31	88.41	90.03	100.00	100.00	91.72	93.88	88.47	100.00	91.44	92.45	92.19	92.92	92.27	92.84	88.82	100.00	91.76	93.45	92.13	92.87	93.26	92.08	90.90	91.45	93.72	92.50	91.17	96.63	5.46	0.321312	0.709013
K	alternative_last_exon	MVB12A	chr19	+	chr19:17534877-17540446;chr19:17534877-17544208;chr19:17534877-17535739	chr19:17534877-17535429	chr19:17544209-17544533;chr19:17535740-17536148	chr19:17535430-17535486			79.49	85.51	83.87	81.82	78.57	59.09	100.00	100.00	94.44	100.00	96.55	100.00	100.00	100.00	100.00	93.33	100.00	100.00	84.78	85.71	86.67	NA	93.75	NA	76.81	90.91	91.67	NA	94.74	81.25	78.26	73.08	72.92	84.62	88.24	78.57	85.15	88.31	3.16	0.702507	0.811592
N	alternative_acceptor	MARCH7	chr2	+	chr2:160621186-160623794	chr2:160621186-160623402		chr2:160623403-160623794	chr2:160623794-160623795		20.93	50.00	21.74	NA	25.00	26.67	2.63	4.44	2.17	4.44	2.04	3.77	7.14	1.85	4.48	4.55	7.27	2.56	30.00	16.22	15.38	20.59	17.39	25.71	NA	14.89	25.00	20.83	16.13	22.22	14.29	20.00	NA	16.98	26.47	18.46	18.57	14.59	-3.98	0.422125	0.733210
K	intron_retention	TBC1D10B	chr16	-	chr16:30370925-30371047				chr16:30370924-30370925;chr16:30371047-30371048		4.26	0.00	6.15	NA	13.33	NA	4.55	0.00	2.00	0.00	0.00	0.00	0.00	0.00	4.48	0.00	0.00	0.00	NA	2.86	6.25	5.88	2.94	0.00	7.69	3.70	3.23	0.00	0.00	NA	6.25	4.35	NA	4.00	5.56	3.57	2.27	3.28	1.01	0.850964	1.000000
N	jcn_only_AD	SFPQ	chr1	-	chr1:35643638-35652601;chr1:35643638-35644265;chr1:35643638-35652547	chr1:35643638-35646735		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		6.67	3.64	7.14	17.39	14.06	5.60	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	9.09	0.00	NA	5.17	7.14	3.64	11.11	24.49	10.00	9.93	8.70	10.00	31.58	24.24	6.00	1.30	4.35	6.45	28.21	28.12	21.28	4.41	6.67	2.26	0.814908	0.913420
N	alternative_acceptor	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648722-75648946;chr15:75648791-75648946;chr15:75648780-75648946	chr15:75648815-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		0.00	0.00	9.52	4.00	6.90	2.13	0.00	NA	NA	9.09	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	1.45	0.00	3.23	0.00	4.55	0.00	3.92	0.00	5.26	5.88	3.45	0.00	0.00	3.57	1.75	0.00	3.23	2.86	0.72	0.00	-0.72	0.120432	0.606219
K	jcn_only_AA	LMAN2	chr5	-	chr5:176761338-176764706;chr5:176764467-176764706	chr5:176764526-176764706					99.19	96.32	99.23	97.76	96.79	93.88	99.70	99.57	98.90	99.51	99.63	99.57	99.40	98.43	98.18	97.23	99.63	99.45	93.17	98.33	95.71	98.82	98.87	99.02	95.65	98.91	97.73	98.62	98.10	95.19	99.35	98.99	98.07	97.38	98.22	96.63	97.19	99.05	1.86	0.120820	0.663989
K	intron_retention	MICAL1	chr6	-	chr6:109770987-109771172				chr6:109770986-109770987;chr6:109771172-109771173		0.00	14.29	15.15	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.79	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	8.11	0.00	5.88	0.00	5.56	0.00	0.00	NA	0.00	4.00	0.00	4.88	3.33	3.85	2.00	0.00	-2.00	0.591039	1.000000
K	intron_retention		chr1	+	chr1:36554717-36556844				chr1:36554716-36554717;chr1:36556844-36556845		5.13	0.00	0.00	NA	9.09	NA	0.00	1.47	0.00	2.44	0.00	0.00	0.00	0.00	2.17	1.96	0.00	0.00	NA	5.88	0.00	0.00	0.00	3.39	0.00	0.00	0.00	4.35	5.88	2.74	9.09	0.00	NA	3.23	9.52	1.25	0.00	3.30	3.30	0.392087	1.000000
K	jcn_only_AD	C17orf62	chr17	-	chr17:80405498-80407049;chr17:80405498-80405726	chr17:80405498-80407045					100.00	96.61	98.92	NA	100.00	NA	100.00	98.15	100.00	100.00	100.00	100.00	100.00	99.36	97.81	100.00	96.83	100.00	100.00	98.51	100.00	NA	100.00	100.00	100.00	98.84	99.22	100.00	95.65	100.00	97.22	97.26	100.00	100.00	94.29	98.39	100.00	98.68	-1.32	0.301919	0.657607
K	intron_retention		chr11	+	chr11:117857250-117859096				chr11:117857249-117857250;chr11:117859096-117859097		4.80	0.00	3.90	NA	NA	NA	2.27	3.27	3.58	1.79	3.12	2.60	2.53	3.77	2.98	2.46	2.29	2.08	NA	1.94	0.00	3.33	2.56	3.54	31.82	3.80	2.65	1.82	0.00	5.26	4.23	2.42	0.00	2.70	2.86	2.37	2.27	3.79	1.52	0.839469	1.000000
K	alternative_donor	MBD4	chr3	-	chr3:129152980-129155303	chr3:129152980-129155285		chr3:129155286-129155303	chr3:129155303-129155304		11.11	30.00	12.77	NA	15.91	NA	14.29	16.67	17.24	14.29	23.20	NA	20.93	12.50	18.18	17.39	21.01	NA	9.52	12.68	15.00	NA	18.92	NA	NA	17.02	20.29	12.50	18.37	14.29	14.81	14.81	17.39	19.35	14.89	21.43	17.39	13.75	-3.64	0.288464	0.650093
K	jcn_only_AA	LIN37,ZNF429	chr19	+	chr19:36239660-36243076	chr19:36239660-36242951		chr19:36242952-36243076	chr19:36243076-36243077		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.175375	0.663989
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48664489-48665378;chr3:48664541-48665378	chr3:48664486-48665378		chr3:48664486-48664488;chr3:48664489-48664540	chr3:48664485-48664486;chr3:48664488-48664489		53.49	67.44	54.22	NA	51.61	NA	78.57	NA	77.78	NA	66.67	NA	66.67	NA	55.00	NA	80.00	NA	50.00	60.00	55.26	NA	65.52	NA	50.00	60.00	53.97	NA	50.00	NA	51.52	57.30	64.52	50.00	45.45	70.59	65.59	56.75	-8.85	0.230599	0.684127
N	jcn_only_AD	SDCCAG8	chr1	+	chr1:243589861-243652315;chr1:243651181-243652315	chr1:243637714-243652315		chr1:243589861-243637713;chr1:243637714-243651180	chr1:243589860-243589861;chr1:243637713-243637714		5.26	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657607
K	intron_retention	MALAT1	chr11	+	chr11:65272750-65272974				chr11:65272749-65272750;chr11:65272974-65272975		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention		chr22	-	chr22:50962854-50964429				chr22:50962853-50962854;chr22:50964429-50964430		94.40	75.00	86.08	94.44	89.29	90.38	NA	56.67	30.95	NA	NA	NA	NA	70.59	64.29	68.42	NA	NA	100.00	97.37	94.95	96.77	90.00	90.91	88.24	90.91	93.55	89.83	86.96	94.34	92.22	91.16	88.24	94.44	92.00	92.73	88.24	91.56	3.33	0.870646	1.000000
K	cassette	DHRS1	chr14	-	chr14:24760426-24761389	chr14:24760426-24760761;chr14:24760832-24761389		chr14:24760762-24760831			94.44	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	DOK3	chr5	-	chr5:176931662-176931743				chr5:176931661-176931662;chr5:176931743-176931744		27.27	21.95	25.53	NA	17.86	NA	5.08	0.00	0.00	9.09	5.45	NA	12.31	3.45	NA	0.00	6.25	NA	25.00	11.43	17.24	NA	30.00	NA	0.00	12.82	15.79	10.00	18.52	NA	17.65	23.40	20.83	26.67	16.13	NA	16.57	12.12	-4.45	0.992089	1.000000
N	jcn_only_AA	MYO9B	chr19	+	chr19:17213368-17253329;chr19:17213368-17214066	chr19:17213368-17256206		chr19:17214067-17253329;chr19:17253330-17256206	chr19:17253329-17253330;chr19:17256206-17256207		100.00	100.00	100.00	NA	NA	NA	98.02	98.78	100.00	95.92	96.37	96.59	97.33	100.00	97.96	89.06	98.71	97.00	100.00	100.00	NA	96.00	100.00	97.73	100.00	100.00	100.00	85.19	86.49	70.59	100.00	100.00	NA	98.80	97.87	99.10	100.00	100.00	0.00	0.290305	0.663989
K	intron_retention	AMZ2P1	chr17	-	chr17:62964500-62968651				chr17:62964499-62964500;chr17:62968651-62968652		26.09	13.58	18.75	15.62	8.99	3.28	8.33	9.09	0.00	NA	10.00	NA	14.81	10.00	8.33	10.00	0.00	NA	7.02	25.00	12.50	7.69	8.11	0.00	11.25	11.11	4.76	0.00	6.90	0.00	26.47	24.07	15.25	11.90	9.09	12.50	12.41	18.05	5.64	0.321498	1.000000
K	intron_retention	RELA	chr11	-	chr11:65421981-65422289				chr11:65421980-65421981;chr11:65422289-65422290		89.31	100.00	94.85	79.31	81.82	87.50	91.67	92.05	91.33	96.94	93.02	94.23	100.00	92.45	90.43	90.65	94.00	95.00	82.35	90.83	84.44	96.00	92.31	94.39	81.82	89.77	95.69	93.10	89.29	94.50	88.33	91.52	88.24	90.14	87.30	90.64	89.95	90.30	0.34	0.886926	1.000000
K	intron_retention	PCED1A	chr20	-	chr20:2816961-2818877				chr20:2816960-2816961;chr20:2818877-2818878		6.67	20.93	35.00	NA	18.75	21.43	8.33	0.00	4.35	NA	0.00	NA	20.00	NA	14.29	10.00	NA	NA	30.00	20.00	25.00	NA	12.50	38.89	14.29	21.43	29.03	23.08	5.56	23.68	NA	31.25	8.33	NA	30.77	26.92	17.14	13.34	-3.81	0.963955	1.000000
N	alternative_donor	ADAM8	chr10	-	chr10:135077270-135080855	chr10:135077270-135079777		chr10:135079778-135080855	chr10:135080855-135080856		4.17	2.99	6.59	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.70	1.96	2.83	1.30	0.91	0.00	0.00	4.44	1.33	5.56	4.62	4.17	3.03	4.62	5.00	2.50	1.54	0.00	2.27	5.19	2.78	0.00	2.38	1.49	1.74	3.22	1.48	0.200237	0.570816
N	jcn_only_AA	VPS13D	chr1	+	chr1:12557686-12566906	chr1:12557686-12559494		chr1:12559495-12566906	chr1:12566906-12566907		0.00	0.00	4.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	0.00	6.25	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	coord_cassette	TRPV2	chr17	+	chr17:16327082-16330762	chr17:16327082-16329412;chr17:16329584-16330035;chr17:16330192-16330762		chr17:16329413-16329583;chr17:16330036-16330191			98.21	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.94	NA	100.00	100.00	100.00	95.00	100.00	97.67	100.00	100.00	100.00	96.23	100.00	100.00	100.00	0.00	0.179241	0.643829
K	cassette	GRIPAP1	chrX	-	chrX:48838104-48839390	chrX:48838104-48838206;chrX:48838285-48839390		chrX:48838207-48838284			88.06	100.00	91.95	NA	86.96	NA	77.78	80.60	80.56	80.65	81.08	81.08	100.00	93.22	95.08	100.00	100.00	100.00	100.00	90.38	85.71	88.24	81.40	84.00	100.00	93.85	93.33	92.59	80.56	100.00	94.59	97.18	92.31	94.59	85.11	96.77	100.00	91.80	-8.20	0.282236	0.709176
N	jcn_only_AA	MOB2	chr11	-	chr11:1491715-1492524	chr11:1491719-1492524		chr11:1491715-1491718	chr11:1491714-1491715		76.92	78.46	94.59	89.39	94.74	93.42	93.75	100.00	93.02	95.31	100.00	91.67	100.00	100.00	100.00	100.00	90.00	100.00	91.84	85.71	88.00	92.16	100.00	92.54	100.00	84.78	87.80	92.86	87.76	92.31	85.71	90.00	89.74	88.89	86.11	92.42	92.80	85.71	-7.09	0.505775	0.758322
K	intron_retention	UTP18	chr17	+	chr17:49374365-49375142				chr17:49374364-49374365;chr17:49375142-49375143		0.00	1.23	0.00	1.25	1.61	0.88	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	1.08	4.76	0.00	3.03	3.08	0.00	0.00	0.00	0.00	0.00	3.45	2.94	0.00	7.69	1.25	0.00	2.38	0.00	0.54	0.00	-0.54	0.411893	1.000000
N	jcn_only_AD	SLAMF8	chr1	+	chr1:159803160-159804973;chr1:159804034-159804973	chr1:159803184-159804973		chr1:159803160-159803183;chr1:159803184-159804033	chr1:159803159-159803160;chr1:159803183-159803184		3.28	0.00	0.00	NA	NA	NA	1.95	3.65	0.00	0.00	4.11	0.00	2.48	1.56	5.13	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	0.78	0.441878	0.699839
K	intron_retention	CCAR2	chr8	+	chr8:22476529-22476662				chr8:22476528-22476529;chr8:22476662-22476663		4.88	0.00	7.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	4.35	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	6.67	0.00	1.92	0.00	2.70	2.94	0.00	2.38	2.38	0.459695	1.000000
K	intron_retention	SLC11A2	chr12	-	chr12:51373842-51375421				chr12:51373841-51373842;chr12:51375421-51375422		66.67	44.44	68.29	55.56	42.86	48.00	76.92	84.62	82.76	86.67	78.57	84.62	60.00	87.50	81.48	88.89	71.43	NA	54.17	78.57	50.00	81.82	75.00	88.89	60.00	56.41	65.52	76.92	68.75	78.72	57.14	65.52	50.00	75.00	78.95	80.00	57.09	72.62	15.54	0.377683	1.000000
K	cassette	PPP2R4	chr9	+	chr9:131873911-131885330	chr9:131873911-131882791;chr9:131882890-131885330		chr9:131882792-131882889			95.71	100.00	100.00	NA	NA	NA	100.00	99.20	97.59	100.00	100.00	100.00	100.00	98.13	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	92.50	NA	100.00	100.00	100.00	100.00	99.60	-0.40	0.155704	0.709176
N	alternative_acceptor	ABTB1	chr3	+	chr3:127391925-127393233;chr3:127391925-127393187	chr3:127391925-127393210		chr3:127393188-127393210;chr3:127393211-127393233	chr3:127393210-127393211;chr3:127393233-127393234		0.00	0.00	0.00	NA	0.00	NA	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	5.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	1.06	0.00	-1.06	0.229328	0.683122
K	alternative_donor	NDUFAF3	chr3	+	chr3:49058833-49059778;chr3:49059218-49059778	chr3:49059655-49059778		chr3:49058833-49059217;chr3:49059218-49059654	chr3:49058832-49058833;chr3:49059217-49059218		96.30	100.00	100.00	NA	95.24	NA	95.56	100.00	100.00	100.00	97.87	100.00	100.00	100.00	96.67	97.14	97.50	100.00	92.31	100.00	100.00	100.00	100.00	100.00	NA	95.65	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	0.00	0.565599	0.795026
K	jcn_only_AA	BRD7	chr16	-	chr16:50354686-50355892	chr16:50354689-50355892		chr16:50354686-50354688	chr16:50354685-50354686		28.17	13.16	35.71	28.57	28.57	31.25	33.33	31.25	39.02	36.36	34.09	44.83	42.11	26.67	31.11	36.73	46.67	40.00	27.91	27.91	35.71	30.30	28.57	30.30	0.00	24.00	30.19	46.15	42.50	34.62	28.95	25.86	19.35	29.73	42.11	31.91	23.63	28.04	4.41	0.441531	0.706196
N	alternative_acceptor	COX7C	chr5	+	chr5:159478191-159492283	chr5:159478191-159491938		chr5:159491939-159492283	chr5:159492283-159492284		100.00	100.00	100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.89	100.00	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.92	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	SART1	chr11	+	chr11:65729565-65731432;chr11:65729565-65731544	chr11:65729565-65731476		chr11:65731433-65731476;chr11:65731477-65731544	chr11:65731476-65731477;chr11:65731544-65731545		11.43	0.00	10.34	NA	11.11	NA	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	9.09	NA	7.14	11.11	0.00	8.57	0.00	0.00	0.00	4.00	0.00	7.14	0.00	15.38	10.00	0.00	5.56	11.76	3.33	0.00	3.57	3.57	0.094284	0.663989
N	coord_cassette	POLR2E	chr19	-	chr19:1090145-1095257	chr19:1090145-1090906;chr19:1090988-1091790;chr19:1091907-1095257		chr19:1090907-1090987;chr19:1091791-1091906			100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	AP1G2	chr14	-	chr14:24032848-24032924				chr14:24032847-24032848;chr14:24032924-24032925		6.25	8.33	11.43	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.45	0.00	NA	0.00	0.00	NA	12.50	NA	0.00	2.78	6.45	NA	0.00	NA	0.00	7.69	0.00	NA	10.00	13.33	0.00	0.00	0.00	0.902357	1.000000
N	jcn_only_AA	MRPL20	chr1	-	chr1:1337637-1341188;chr1:1337806-1341188;chr1:1337631-1341188	chr1:1337982-1341188		chr1:1337631-1337636;chr1:1337637-1337805;chr1:1337806-1337981	chr1:1337630-1337631;chr1:1337636-1337637;chr1:1337805-1337806		3.66	0.00	2.44	3.73	1.81	1.27	0.00	0.00	8.70	2.30	1.64	0.00	0.86	2.08	5.06	1.64	1.31	0.00	1.16	2.67	2.38	5.19	2.21	5.45	0.00	5.56	1.80	3.53	2.76	5.74	5.56	2.24	2.33	3.70	2.94	2.75	0.43	3.17	2.73	0.034015	0.663989
N	cassette	DOK1	chr2	+	chr2:74782581-74783020;chr2:74782581-74783434	chr2:74782581-74782701;chr2:74782796-74783434,chr2:74782796-74783020		chr2:74782702-74782795			100.00	88.24	97.73	NA	94.12	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	91.67	100.00	100.00	NA	95.65	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	95.45	100.00	97.30	100.00	97.72	100.00	2.28	0.102675	0.683336
K	intron_retention	NSMAF	chr8	-	chr8:59498321-59498456				chr8:59498320-59498321;chr8:59498456-59498457		3.12	0.00	5.66	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	NA	5.00	5.00	0.00	2.47	1.12	7.69	4.55	0.00	4.00	6.06	4.00	0.00	1.56	1.56	0.324405	1.000000
N	jcn_only_AA	STXBP2	chr19	+	chr19:7708132-7709499	chr19:7708132-7709467		chr19:7709468-7709499	chr19:7709499-7709500		2.93	2.40	5.29	0.00	3.64	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.68	1.72	2.24	0.00	2.56	0.00	0.00	1.90	3.50	0.00	0.72	0.00	5.85	5.36	5.00	2.78	1.63	2.17	1.20	1.81	0.61	0.864823	0.947775
N	alternative_acceptor	C17orf62	chr17	-	chr17:80402538-80403739;chr17:80402468-80403739	chr17:80402880-80403739		chr17:80402468-80402537;chr17:80402538-80402879	chr17:80402467-80402468;chr17:80402537-80402538		3.56	5.61	3.25	7.69	3.77	0.00	0.85	0.98	0.76	3.33	0.00	4.00	2.33	1.04	1.37	5.00	2.13	6.25	0.00	2.86	2.22	4.35	2.41	8.00	2.38	1.65	3.93	6.25	3.28	5.63	2.27	3.14	0.00	4.35	4.55	4.80	1.59	1.96	0.37	0.842450	0.943976
N	jcn_only_AD	DHX38	chr16	+	chr16:72140004-72141238	chr16:72140017-72141238		chr16:72140004-72140016	chr16:72140003-72140004		88.89	88.89	93.94	70.00	90.00	NA	100.00	83.33	100.00	91.67	100.00	94.74	100.00	90.48	100.00	93.75	96.55	100.00	NA	90.91	80.00	100.00	92.68	89.66	NA	92.00	93.33	95.00	88.24	90.91	76.00	100.00	81.82	88.89	100.00	93.62	94.44	89.69	-4.76	0.314570	0.657607
N	cassette	LST1	chr6	+	chr6:31555096-31556339;chr6:31555096-31556294;chr6:31555511-31556273;chr6:31555096-31556273;chr6:31555511-31556294;chr6:31555511-31556339	chr6:31555096-31555725,chr6:31555511-31555725;chr6:31555744-31556273,chr6:31555744-31556294,chr6:31555744-31556339		chr6:31555726-31555743			12.50	14.01	8.33	11.55	10.95	13.17	33.71	23.91	27.78	26.27	26.98	26.34	32.89	21.60	24.14	35.27	34.38	31.96	15.12	14.63	17.35	13.77	13.98	13.01	20.31	16.13	7.62	25.55	22.66	25.88	19.57	13.04	11.08	12.12	11.40	12.74	17.71	17.85	0.14	0.500091	0.783420
K	jcn_only_AD	ARIH1	chr15	+	chr15:72873219-72874415	chr15:72873333-72874415		chr15:72873219-72873332	chr15:72873218-72873219		100.00	100.00	95.45	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	94.29	100.00	94.12	100.00	100.00	100.00	100.00	96.77	92.31	NA	96.23	100.00	100.00	100.00	96.15	97.73	100.00	100.00	96.15	96.77	92.31	100.00	98.87	-1.13	0.983985	0.993847
K	cassette	DOT1L	chr19	+	chr19:2227127-2229783	chr19:2227127-2227735;chr19:2228382-2229783		chr19:2227736-2228381			23.53	16.67	11.43	6.80	5.33	2.93	10.00	5.00	5.56	11.90	11.90	13.21	5.88	5.26	8.00	8.62	12.50	14.06	0.00	22.22	9.68	16.50	8.05	17.21	NA	15.79	11.11	20.34	10.53	16.67	14.81	10.00	7.14	17.39	17.07	23.45	7.14	15.30	8.16	0.160562	0.709176
N	cassette	PSMC3	chr11	-	chr11:47444525-47445979	chr11:47444525-47445659;chr11:47445735-47445979		chr11:47445660-47445734			100.00	90.48	95.45	100.00	97.73	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	94.44	100.00	100.00	98.15	99.00	100.00	1.00	0.305947	0.709176
N	jcn_only_AA	EIF4G2	chr11	-	chr11:10821322-10821636;chr11:10821331-10821636;chr11:10821157-10821636	chr11:10821304-10821636		chr11:10821157-10821303;chr11:10821304-10821321;chr11:10821322-10821330	chr11:10821156-10821157;chr11:10821303-10821304;chr11:10821321-10821322		98.57	90.62	98.85	95.00	95.65	NA	99.01	98.39	98.77	98.89	98.32	98.69	98.95	98.42	97.95	98.36	97.94	97.88	84.62	95.71	91.07	97.72	97.47	98.09	NA	97.63	97.51	97.50	96.97	95.16	92.31	95.47	90.91	98.35	98.76	98.44	90.91	98.01	7.10	0.228223	0.663989
K	intron_retention	LGALS9	chr17	+	chr17:25974145-25975861				chr17:25974144-25974145;chr17:25975861-25975862		24.76	33.85	41.18	20.00	18.03	25.00	4.00	16.67	NA	0.00	5.26	0.00	7.69	6.25	9.09	11.36	3.77	4.00	17.86	16.42	13.89	37.50	25.64	34.38	14.81	23.81	22.22	28.07	21.33	32.39	22.73	26.09	16.42	39.22	19.23	34.15	15.62	19.70	4.09	0.545358	1.000000
N	alternative_acceptor	HDAC10,MAPK12	chr22	-	chr22:50684257-50684338;chr22:50684195-50684338	chr22:50684166-50684338		chr22:50684166-50684194;chr22:50684195-50684256	chr22:50684165-50684166;chr22:50684194-50684195		10.34	6.38	0.00	7.14	10.00	6.45	8.33	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	NA	5.45	0.00	7.69	NA	9.09	NA	12.09	11.11	0.00	0.00	6.25	0.00	0.00	4.00	7.81	NA	14.29	10.53	7.09	5.17	-1.92	0.723859	0.896493
N	cassette	CD47	chr3	-	chr3:107773196-107776323;chr3:107770818-107776323	chr3:107770818-107774366,chr3:107773196-107774366;chr3:107774414-107776323		chr3:107774367-107774413			4.68	2.03	5.56	7.62	4.41	6.61	1.54	1.06	1.41	2.11	0.62	2.82	0.77	1.16	1.82	0.00	1.46	1.25	3.38	2.62	1.93	3.66	4.26	4.85	4.76	1.37	2.25	3.20	2.24	2.26	3.35	3.97	2.67	4.44	2.42	3.45	2.35	2.00	-0.35	0.858374	0.951512
K	alternative_acceptor	INTS1	chr7	-	chr7:1510329-1510481	chr7:1510348-1510481		chr7:1510329-1510347	chr7:1510328-1510329		5.88	5.20	6.45	2.56	4.11	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.60	4.00	4.11	0.00	3.33	0.00	0.85	0.00	2.44	0.00	0.00	0.00	8.89	11.11	6.52	4.17	2.08	2.70	2.23	2.00	-0.23	0.826303	0.940678
N	jcn_only_AD	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341224-90342508;chr9:90341165-90342508;chr9:90342384-90342508	chr9:90341169-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		56.20	48.84	56.77	40.93	48.00	55.88	55.14	52.69	49.37	51.76	56.57	57.14	54.79	50.34	47.36	49.19	57.45	57.09	50.00	52.30	47.57	49.46	48.92	50.23	46.67	56.38	55.71	46.89	46.86	46.67	54.18	58.25	56.94	50.05	50.31	47.87	52.39	53.44	1.04	0.427327	0.687950
N	alternative_last_exon	COX6A1	chr12	+	chr12:13364523-13367467	chr12:13364523-13366412	chr12:13367468-13372873	chr12:13366413-13366509			99.12	NA	97.62	5.26	37.50	0.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.71	100.00	99.68	0.00	99.39	NA	99.38	98.81	100.00	0.00	99.50	93.33	99.04	98.36	97.78	97.56	96.15	5.00	99.34	98.81	99.59	5.00	99.44	94.44	0.072984	0.281549
N	jcn_only_AA	MIIP	chr1	+	chr1:12089339-12089897;chr1:12089339-12089821	chr1:12089339-12089790		chr1:12089791-12089821;chr1:12089822-12089897	chr1:12089821-12089822;chr1:12089897-12089898		0.00	0.00	0.00	NA	NA	5.56	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr6	+	chr6:170667407-170697374				chr6:170667406-170667407;chr6:170697374-170697375		0.00	0.00	4.00	NA	0.00	NA	0.00	0.00	9.09	6.67	4.55	NA	0.00	0.00	0.00	8.33	3.23	NA	NA	7.14	5.88	NA	5.00	6.25	NA	5.56	5.88	NA	0.00	NA	0.00	0.00	0.00	5.56	6.25	4.76	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	MPZL1	chr1	+	chr1:167745404-167757056;chr1:167745404-167756420	chr1:167745404-167755847		chr1:167755848-167756420;chr1:167756421-167757056	chr1:167756420-167756421;chr1:167757056-167757057		1.25	0.00	2.37	0.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	0.00	0.00	1.06	2.35	5.26	2.27	NA	1.52	1.08	0.00	0.00	0.88	0.71	0.53	0.00	3.75	5.26	3.95	0.00	0.35	0.35	0.093414	0.598088
K	alternative_donor	RENBP	chrX	-	chrX:153209423-153209573	chrX:153209423-153209531		chrX:153209532-153209573	chrX:153209573-153209574		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	89.29	100.00	97.14	100.00	100.00	100.00	100.00	100.00	0.00	0.310363	0.650093
N	cassette	CARD8	chr19	-	chr19:48744321-48752779;chr19:48744321-48753007	chr19:48744321-48745796;chr19:48745902-48753007,chr19:48745902-48752779		chr19:48745797-48745901			7.41	0.00	5.13	NA	0.00	NA	2.50	5.88	5.26	NA	6.25	NA	1.92	10.81	5.00	NA	4.44	9.09	3.45	11.11	7.14	NA	5.00	NA	0.00	9.09	8.33	10.00	10.00	NA	9.09	6.67	5.00	6.25	3.85	0.00	2.21	9.09	6.88	0.000149	0.038633
K	intron_retention	NEAT1	chr11	+	chr11:65193209-65193531				chr11:65193208-65193209;chr11:65193531-65193532		72.52	66.95	66.21	82.94	77.06	84.55	62.50	67.03	67.19	58.06	58.06	66.67	74.36	64.29	67.91	63.04	50.00	40.00	100.00	70.73	74.21	69.93	72.28	65.54	100.00	69.12	77.10	72.51	75.00	74.62	77.57	69.80	78.33	71.84	69.93	76.95	76.34	69.93	-6.42	0.452874	1.000000
N	alternative_acceptor	NABP1	chr2	+	chr2:192549023-192549602;chr2:192549023-192550156;chr2:192549023-192549598	chr2:192549023-192550324		chr2:192549599-192549602;chr2:192549603-192550156;chr2:192550157-192550324	chr2:192549602-192549603;chr2:192550156-192550157;chr2:192550324-192550325		90.43	100.00	88.92	94.74	100.00	91.86	98.67	95.31	97.08	97.48	98.47	96.81	97.83	95.91	94.60	96.68	100.00	96.95	100.00	89.78	97.83	90.24	94.67	87.64	NA	88.10	92.97	94.21	97.14	95.80	91.11	90.57	100.00	84.87	90.74	85.19	100.00	90.77	-9.23	0.001320	0.302671
N	alternative_acceptor	CD2BP2	chr16	-	chr16:30364417-30364501	chr16:30364436-30364501		chr16:30364417-30364435	chr16:30364416-30364417		4.05	4.82	2.67	1.18	1.67	1.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	4.88	0.00	2.86	0.00	2.15	2.27	0.00	0.00	0.00	5.19	6.86	3.97	3.57	3.08	3.95	0.00	1.07	1.07	0.749889	0.906968
K	intron_retention		chr11	+	chr11:47280811-47281341				chr11:47280810-47280811;chr11:47281341-47281342		28.28	22.22	22.86	12.50	22.22	NA	4.50	3.32	3.42	2.97	6.45	0.00	5.00	5.22	4.46	3.25	3.45	0.00	15.38	26.34	11.50	22.11	38.28	22.81	46.15	23.48	33.12	17.07	31.58	28.95	16.33	22.31	9.09	17.81	18.69	15.07	12.23	19.91	7.67	0.896485	1.000000
N	jcn_only_AA		chr7	+	chr7:44805179-44805565;chr7:44805179-44805886;chr7:44805179-44809053	chr7:44805179-44805762		chr7:44805566-44805762;chr7:44805763-44805886;chr7:44805887-44809053	chr7:44805762-44805763;chr7:44805886-44805887;chr7:44809053-44809054		100.00	100.00	87.30	NA	100.00	NA	83.33	82.86	83.82	94.44	91.30	78.57	87.50	88.33	88.64	100.00	100.00	81.25	91.67	89.13	86.21	84.62	92.86	92.86	100.00	76.47	92.65	85.71	92.86	81.82	82.86	88.73	NA	93.33	100.00	88.64	91.67	85.59	-6.08	0.238921	0.663989
N	jcn_only_AA	OXA1L	chr14	+	chr14:23240558-23240656;chr14:23240558-23240642	chr14:23240558-23240692		chr14:23240643-23240656;chr14:23240657-23240692	chr14:23240656-23240657;chr14:23240692-23240693		0.00	2.76	0.00	0.00	0.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.11	3.92	1.23	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.96	3.91	5.65	0.00	0.00	1.14	1.38	0.00	-1.38	0.955381	0.984403
K	intron_retention	KLC1	chr14	+	chr14:104159972-104166991				chr14:104159971-104159972;chr14:104166991-104166992		72.00	66.67	63.16	70.00	56.25	66.67	NA	NA	NA	86.67	90.00	NA	81.82	85.71	91.67	73.33	88.89	78.57	58.33	70.59	50.00	78.57	63.64	71.43	62.50	56.52	71.43	75.00	72.73	77.78	61.90	56.00	55.26	66.67	71.43	74.19	62.50	70.59	8.09	0.144131	1.000000
N	alternative_donor	NARF	chr17	+	chr17:80443486-80445791	chr17:80443531-80445791		chr17:80443486-80443530	chr17:80443485-80443486		94.85	96.15	93.02	100.00	93.33	96.39	93.75	100.00	95.65	NA	NA	NA	100.00	88.24	94.29	NA	100.00	NA	96.47	94.34	94.49	NA	84.00	95.83	96.84	100.00	95.79	100.00	100.00	100.00	95.35	92.50	96.70	100.00	100.00	93.75	96.59	95.10	-1.49	0.562923	0.794043
N	jcn_only_AA	PRPF38A	chr1	+	chr1:52880320-52880433;chr1:52880320-52880403	chr1:52880320-52880412		chr1:52880404-52880412;chr1:52880413-52880433	chr1:52880412-52880413;chr1:52880433-52880434		0.00	NA	0.00	NA	5.00	7.69	0.00	0.00	0.00	0.00	2.08	7.14	5.88	0.00	6.06	4.44	0.00	9.09	0.00	0.00	0.00	6.67	0.00	5.88	NA	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.702972	0.867936
K	alternative_acceptor	ARL6IP4	chr12	+	chr12:123465847-123466202;chr12:123465847-123466141	chr12:123465847-123466117		chr12:123466118-123466141;chr12:123466142-123466202	chr12:123466141-123466142;chr12:123466202-123466203		33.33	35.85	38.10	38.64	30.09	25.86	29.49	38.89	40.43	25.00	32.84	25.00	30.93	36.36	34.09	28.12	28.57	29.03	23.96	31.25	25.93	36.36	33.82	38.10	20.61	25.00	41.86	26.47	20.41	23.26	25.00	32.26	26.09	25.00	28.57	36.84	27.79	32.29	4.50	0.264690	0.709013
K	intron_retention	TSTA3	chr8	-	chr8:144695774-144695920				chr8:144695773-144695774;chr8:144695920-144695921		0.00	0.00	2.56	0.00	3.33	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	9.38	6.67	8.70	0.00	0.00	0.00	6.90	0.00	0.00	0.00	3.85	3.03	2.17	0.00	0.00	4.35	0.00	0.00	0.00	0.803044	1.000000
K	jcn_only_AA	SFPQ	chr1	-	chr1:35642073-35642919	chr1:35642076-35642919					60.00	60.15	61.29	60.96	65.58	62.35	NA	NA	50.00	83.33	NA	76.92	70.00	NA	75.00	73.68	83.33	NA	61.34	65.45	63.16	59.21	59.84	57.50	55.67	62.16	61.82	65.96	66.67	67.71	60.42	61.11	58.95	64.91	59.04	63.96	60.15	61.29	1.14	0.780457	0.904713
K	intron_retention		chr9	+	chr9:140135870-140136172				chr9:140135869-140135870;chr9:140136172-140136173		0.94	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	1.41	NA	2.63	2.50	1.52	0.89	0.00	4.04	6.72	4.76	1.52	0.98	1.29	0.00	1.49	1.49	0.877206	1.000000
K	intron_retention	PA2G4	chr12	+	chr12:56504262-56504342				chr12:56504261-56504262;chr12:56504342-56504343		2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.41	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	7.02	0.00	1.59	0.00	0.00	0.00	1.43	1.43	0.427759	1.000000
N	alternative_acceptor	INPPL1	chr11	+	chr11:71941064-71941164	chr11:71941064-71941144		chr11:71941145-71941164	chr11:71941164-71941165		0.00	0.00	1.43	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	NA	NA	3.57	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.00	NA	0.00	2.44	0.00	0.00	0.00	0.00	0.363217	0.709013
N	alternative_acceptor	TGFBI	chr5	+	chr5:135390551-135391368	chr5:135390551-135390957		chr5:135390958-135391368	chr5:135391368-135391369		0.76	2.66	1.36	8.45	1.95	40.00	0.31	0.45	0.41	0.28	0.48	0.29	0.28	0.00	0.47	0.41	0.58	0.15	5.88	0.52	1.23	0.67	1.50	0.87	3.77	0.65	0.67	0.90	1.70	0.89	0.97	1.00	7.03	1.34	1.87	0.62	3.21	0.58	-2.63	0.060333	0.574109
K	intron_retention	HMGN2	chr1	+	chr1:26800224-26800575				chr1:26800223-26800224;chr1:26800575-26800576		5.45	3.50	7.17	1.49	2.05	1.16	0.43	0.90	1.05	0.00	0.63	0.00	0.75	1.49	2.51	0.24	0.65	0.00	4.42	3.83	4.25	1.77	2.33	1.37	7.74	6.84	5.63	0.78	2.02	1.15	6.36	8.33	5.95	3.24	6.53	2.04	3.96	4.64	0.68	0.832142	1.000000
K	cassette	C8orf59	chr8	-	chr8:86129732-86132534	chr8:86129732-86131464;chr8:86131593-86132534		chr8:86131465-86131592			2.50	3.28	6.56	8.82	11.39	9.09	1.45	5.88	1.92	5.08	3.60	3.23	2.38	3.57	2.22	4.69	6.00	6.52	0.00	0.00	3.28	2.78	2.44	2.78	0.00	3.85	2.22	4.88	4.65	1.92	0.00	5.66	1.54	11.11	12.07	12.12	1.50	3.04	1.54	0.303888	0.709176
K	jcn_only_AD	CNBP	chr3	-	chr3:128890382-128890476;chr3:128890382-128890494	chr3:128890382-128890497		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		45.87	60.00	51.53	41.67	50.00	NA	45.89	44.17	44.47	50.86	46.12	52.94	46.37	48.15	45.51	52.55	51.44	61.76	NA	57.14	46.77	53.10	50.00	53.15	NA	44.44	49.03	52.59	47.40	51.43	58.51	59.56	50.00	52.06	58.74	55.70	48.19	47.01	-1.18	0.845659	0.928405
K	intron_retention	MRPL28	chr16	-	chr16:418636-419067				chr16:418635-418636;chr16:419067-419068		4.29	4.00	1.33	2.27	2.47	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	1.54	0.00	0.00	6.67	3.77	4.81	3.57	3.23	3.85	8.33	3.03	2.30	2.86	3.33	4.08	3.45	4.35	6.82	6.06	1.82	4.17	5.33	3.24	-2.09	0.699989	1.000000
K	intron_retention	PTK2B	chr8	+	chr8:27309027-27310630				chr8:27309026-27309027;chr8:27310630-27310631		4.26	0.00	6.10	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.39	0.00	6.25	7.27	2.27	NA	2.88	4.82	2.70	1.82	1.54	4.92	5.00	5.88	5.88	7.89	2.20	0.00	3.13	3.13	0.574024	1.000000
K	alternative_acceptor	SURF1	chr9	-	chr9:136219586-136220603	chr9:136219622-136220603		chr9:136219586-136219621	chr9:136219585-136219586		100.00	100.00	97.06	100.00	95.45	96.15	92.59	NA	88.89	100.00	100.00	92.86	97.14	NA	96.00	100.00	100.00	NA	98.08	93.33	97.87	100.00	100.00	100.00	95.83	100.00	96.88	NA	96.30	94.12	100.00	97.37	95.92	100.00	96.15	93.10	96.53	100.00	3.47	0.412642	0.726722
N	cassette	NUP98	chr11	-	chr11:3697851-3704429	chr11:3697851-3700783;chr11:3700939-3704429		chr11:3700784-3700938			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.30	NA	100.00	100.00	100.00	100.00	97.22	96.43	100.00	100.00	95.35	92.86	100.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	ARRB2	chr17	+	chr17:4614040-4619267;chr17:4614040-4620511	chr17:4614040-4618307;chr17:4618339-4620511,chr17:4618339-4619267		chr17:4618308-4618338			43.68	15.87	36.18	NA	34.92	NA	26.55	52.22	45.11	16.45	31.48	12.96	29.51	56.00	61.81	20.38	38.82	17.39	31.25	51.79	37.50	8.16	24.53	9.43	42.86	52.98	38.89	21.43	26.73	30.99	40.91	38.89	31.82	17.72	22.60	7.94	30.38	52.00	21.62	0.001308	0.124251
K	intron_retention	FMNL1	chr17	+	chr17:43309848-43310590				chr17:43309847-43309848;chr17:43310590-43310591		1.87	14.89	5.96	NA	9.52	NA	0.00	0.87	0.00	0.00	0.00	0.00	0.88	0.00	2.17	0.00	0.00	0.00	NA	6.19	5.56	0.00	5.26	0.00	3.92	1.72	3.17	3.12	5.56	NA	2.86	4.67	14.29	6.25	5.22	2.00	3.92	1.79	-2.12	0.674997	1.000000
K	intron_retention		chr1	-	chr1:52255330-52256204				chr1:52255329-52255330;chr1:52256204-52256205		3.55	2.02	5.71	2.08	2.50	2.76	0.00	0.00	1.04	2.27	1.37	0.00	1.00	1.11	2.59	0.00	0.00	0.00	1.98	4.76	3.09	5.71	3.09	7.69	2.45	3.57	4.59	4.04	3.59	4.17	4.24	5.56	2.08	6.76	3.01	7.00	2.00	3.56	1.56	0.532237	1.000000
K	jcn_only_AA	CDK13,CPSF4	chr7	+	chr7:99050064-99051666;chr7:99050064-99051663	chr7:99050064-99051588		chr7:99051589-99051663;chr7:99051664-99051666	chr7:99051663-99051664;chr7:99051666-99051667		25.00	25.00	29.41	NA	NA	NA	29.41	25.00	35.29	34.48	19.23	NA	11.54	NA	33.33	25.00	23.33	NA	NA	40.00	30.77	NA	13.33	NA	NA	41.67	46.43	NA	36.36	NA	NA	19.23	18.18	40.00	20.00	NA	21.59	32.50	10.91	0.097377	0.663989
K	cassette	PQLC1	chr18	-	chr18:77703463-77710723	chr18:77703463-77709518;chr18:77709637-77710723		chr18:77709519-77709636			0.00	0.00	4.17	0.00	0.00	0.00	1.33	2.44	2.38	2.08	1.64	6.67	1.39	2.22	3.70	1.49	1.82	4.00	0.00	0.00	3.45	0.00	0.00	2.78	0.00	0.00	5.56	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.585708	0.842370
N	cassette	FNBP1	chr9	-	chr9:132678260-132687238;chr9:132681522-132687238;chr9:132671279-132687238	chr9:132681522-132686122,chr9:132678260-132686122,chr9:132671279-132686122;chr9:132686219-132687238		chr9:132686123-132686218			52.38	22.22	21.28	27.27	7.69	NA	13.64	63.16	20.75	19.30	5.56	30.77	14.06	70.93	15.62	19.44	6.90	20.00	0.00	40.00	18.75	25.00	14.81	25.00	NA	58.70	23.68	43.75	27.78	42.31	38.10	11.63	9.09	16.67	12.50	22.55	13.64	55.54	41.90	0.000140	0.038633
N	cassette	SDSL	chr12	+	chr12:113866265-113873133;chr12:113866265-113871938	chr12:113866265-113866964;chr12:113867105-113873133,chr12:113867105-113871938		chr12:113866965-113867104			93.88	100.00	88.57	85.71	95.56	NA	95.35	97.50	96.91	91.43	92.45	92.00	100.00	96.08	97.22	95.24	100.00	NA	100.00	92.11	94.81	100.00	86.67	NA	86.36	97.96	95.92	85.71	95.24	85.71	92.54	92.19	100.00	89.29	86.36	88.89	100.00	94.98	-5.02	0.458787	0.757194
K	cassette	MARK3	chr14	+	chr14:103946828-103958113	chr14:103946828-103957288;chr14:103957445-103958113		chr14:103957289-103957444			6.25	11.43	6.41	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	9.09	5.45	3.03	2.50	2.94	2.33	0.00	3.45	4.88	0.00	0.00	2.78	4.65	3.03	0.00	4.76	5.08	3.85	0.00	4.05	4.05	0.962225	0.990355
K	jcn_only_AA	STRN4	chr19	-	chr19:47230825-47231150;chr19:47230949-47231150	chr19:47230804-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		82.61	68.75	62.50	NA	NA	NA	73.53	78.79	80.00	90.62	79.07	88.00	78.26	87.80	65.79	75.00	86.84	75.00	NA	80.77	NA	75.00	69.57	70.59	100.00	67.74	68.00	85.71	87.50	72.73	58.33	64.00	NA	72.73	75.00	70.00	75.90	79.78	3.88	0.634765	0.838192
K	jcn_only_AA	PRPF31	chr19	+	chr19:54628036-54629902	chr19:54628036-54629874		chr19:54629875-54629902	chr19:54629902-54629903		0.00	0.00	6.12	9.52	3.39	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.00	5.56	4.17	0.00	1.89	0.00	0.00	0.00	5.56	0.00	0.00	0.00	4.17	5.41	3.28	0.00	0.00	6.25	0.00	0.00	0.00	0.808481	0.919497
N	alternative_donor	COA5	chr2	-	chr2:99220655-99224769;chr2:99220655-99224540	chr2:99220655-99224725		chr2:99224541-99224725;chr2:99224726-99224769	chr2:99224725-99224726;chr2:99224769-99224770		0.00	2.50	0.00	NA	0.00	0.00	2.78	0.00	3.45	0.00	3.85	0.00	2.78	NA	4.35	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.67	0.00	NA	0.00	0.00	5.00	0.00	0.00	NA	0.00	0.00	1.25	0.00	-1.25	0.554748	0.786269
K	cassette	IRF9,RP11-468E2.4	chr14	+	chr14:24633344-24635055	chr14:24633344-24633822;chr14:24634165-24635055		chr14:24633823-24634164			92.07	90.57	94.74	100.00	86.84	96.61	95.95	97.35	98.49	98.94	96.30	98.88	97.56	99.18	99.17	99.39	98.72	98.83	83.33	94.85	94.19	98.36	95.38	99.19	100.00	97.14	95.27	98.06	96.08	97.40	94.12	92.90	87.50	97.75	92.73	99.03	93.26	96.00	2.74	0.283763	0.709176
K	jcn_only_AD	BUD31	chr7	+	chr7:99006628-99007656	chr7:99006869-99007656		chr7:99006628-99006868	chr7:99006627-99006628		17.95	25.40	24.36	17.07	26.79	25.00	21.28	25.00	36.67	34.92	27.12	33.33	23.73	27.78	43.64	18.06	25.00	31.91	20.37	31.75	33.87	17.95	17.19	24.49	22.22	27.27	24.62	18.42	25.45	22.92	22.22	37.14	24.00	26.53	26.53	26.42	22.98	26.13	3.16	0.277314	0.657607
K	intron_retention	KAT5	chr11	+	chr11:65484279-65484359				chr11:65484278-65484279;chr11:65484359-65484360		7.84	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	0.00	0.00	NA	2.44	2.27	0.00	0.00	0.00	10.87	7.02	0.00	5.56	0.00	3.70	0.00	1.22	1.22	0.255691	1.000000
K	intron_retention	COX20	chr1	+	chr1:245005561-245006342				chr1:245005560-245005561;chr1:245006342-245006343		12.12	0.00	34.88	0.00	2.63	0.00	0.00	0.00	0.00	0.00	1.90	0.00	1.89	0.00	4.35	0.89	0.00	0.00	3.28	14.29	1.28	6.35	8.89	10.00	0.00	20.00	17.95	0.00	6.52	0.00	10.71	11.54	0.00	10.91	8.20	7.35	0.00	11.41	11.41	0.168073	1.000000
K	intron_retention	DUS1L	chr17	-	chr17:80016695-80017823				chr17:80016694-80016695;chr17:80017823-80017824		0.00	0.00	6.98	2.70	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.75	0.00	2.27	12.12	7.69	18.18	0.00	0.00	7.32	2.56	3.23	2.38	9.09	5.00	2.20	5.56	2.22	4.76	0.00	0.00	0.00	0.886214	1.000000
K	intron_retention		chr6	-	chr6:160100331-160103505				chr6:160100330-160100331;chr6:160103505-160103506		49.05	64.58	53.06	42.65	54.31	41.76	72.53	57.12	66.05	57.26	71.45	56.24	51.65	33.14	45.43	42.90	57.19	42.32	60.33	41.29	58.67	48.09	54.24	45.31	65.53	46.12	54.03	49.55	55.75	47.05	39.37	40.54	61.84	53.33	62.45	51.84	63.21	43.70	-19.51	0.734290	1.000000
N	alternative_donor	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6918476-6919092	chr17:6918779-6919092		chr17:6918476-6918778	chr17:6918475-6918476		5.00	0.00	3.78	2.17	2.82	3.28	0.00	0.00	0.60	0.00	0.00	1.39	0.00	0.00	1.17	1.45	0.00	0.00	1.01	4.17	2.13	7.02	1.65	5.26	2.33	3.95	5.06	2.38	1.52	1.45	5.32	4.55	0.00	5.26	5.81	3.23	0.00	4.06	4.06	0.053244	0.406668
N	alternative_acceptor	PHRF1	chr11	+	chr11:610348-610666;chr11:610348-610500	chr11:610348-610596		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	3.81	0.00	-3.81	0.053998	0.570243
K	intron_retention	NAGK	chr2	+	chr2:71300725-71302684				chr2:71300724-71300725;chr2:71302684-71302685		4.33	2.94	8.74	0.00	0.94	0.00	1.18	1.39	0.00	0.00	0.00	0.56	0.88	0.77	2.61	1.00	0.48	0.69	0.44	2.92	0.00	1.14	1.36	2.08	3.98	2.56	4.35	3.57	1.35	0.99	1.27	4.90	0.39	4.72	2.96	4.50	1.03	1.98	0.95	0.881276	1.000000
K	intron_retention	DNASE1L1	chrX	-	chrX:153631723-153631862				chrX:153631722-153631723;chrX:153631862-153631863		0.00	0.00	2.13	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	4.17	4.48	0.00	0.00	0.00	1.92	1.75	2.80	0.00	0.00	4.26	0.00	0.00	3.53	2.47	0.00	0.00	0.00	0.594508	1.000000
N	cassette	TMEM150B	chr19	-	chr19:55831535-55831925;chr19:55828335-55831925	chr19:55831535-55831758,chr19:55828335-55831758;chr19:55831827-55831925		chr19:55831759-55831826			94.57	80.95	85.58	90.00	77.78	NA	92.42	99.00	97.77	100.00	90.00	100.00	93.65	97.78	93.38	97.30	88.46	93.75	NA	88.61	84.09	100.00	75.00	82.14	NA	89.66	85.06	93.10	93.10	93.06	93.18	84.27	78.57	100.00	86.84	95.92	86.69	93.88	7.19	0.151923	0.709176
K	alternative_donor	KAT5	chr11	+	chr11:65486221-65486343	chr11:65486247-65486343		chr11:65486221-65486246	chr11:65486220-65486221		9.33	7.69	10.45	13.51	4.62	3.28	2.33	0.00	3.77	0.00	2.94	0.00	7.69	2.00	3.23	2.94	1.61	1.69	4.35	5.17	7.35	9.52	4.69	10.00	7.50	5.26	8.77	8.11	5.63	4.00	13.92	11.59	6.90	9.52	6.25	7.79	7.20	5.21	-1.99	0.955578	0.984606
K	alternative_last_exon	RP11-644F5.10,SNRNP35	chr12	+	chr12:56113008-56115472	chr12:56113008-56113282	chr12:56115473-56118487	chr12:56113283-56113487			95.93	97.77	92.59	99.42	99.06	99.56	99.31	98.45	97.96	99.12	99.30	98.96	99.41	98.32	97.22	99.21	98.44	98.51	98.88	95.73	98.67	98.39	98.09	98.48	98.49	96.72	95.04	99.02	98.77	98.94	96.97	93.33	99.00	97.83	98.33	98.52	98.94	96.84	-2.09	0.010799	0.161746
K	alternative_donor	CHMP1A	chr16	-	chr16:89713123-89713610	chr16:89713123-89713442		chr16:89713443-89713610	chr16:89713610-89713611		4.90	8.89	3.74	5.26	2.27	NA	0.00	0.66	0.94	0.00	0.00	0.00	0.80	0.00	0.88	0.00	1.67	0.00	7.69	3.49	2.17	1.96	6.25	3.03	0.00	1.74	3.88	3.45	1.41	2.13	6.02	3.57	4.17	3.57	2.30	5.69	2.48	2.62	0.13	0.687245	0.866509
K	cassette	MRPL52	chr14	+	chr14:23299464-23303380;chr14:23300247-23303380	chr14:23300247-23302626,chr14:23299464-23302626;chr14:23302699-23303380		chr14:23302627-23302698			86.96	89.87	89.69	88.24	90.62	91.43	93.18	83.33	92.86	90.00	91.04	90.00	88.14	85.71	88.37	90.54	91.01	92.50	90.26	83.19	86.34	87.50	90.36	90.91	93.02	87.76	84.15	92.86	85.00	92.68	87.23	89.86	84.62	90.91	85.37	88.37	90.06	86.33	-3.73	0.026547	0.412736
N	alternative_acceptor	SARS	chr1	+	chr1:109756751-109766578;chr1:109756751-109766603;chr1:109756751-109766599	chr1:109756751-109757168		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		0.00	5.56	0.00	NA	5.88	NA	2.90	0.00	2.80	8.00	7.41	4.17	3.70	0.00	3.85	8.00	7.14	5.26	NA	0.00	0.00	0.00	2.63	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	3.33	2.22	0.00	4.63	0.00	-4.63	0.039782	0.560254
N	alternative_acceptor	NRD1	chr1	-	chr1:52260881-52263920;chr1:52260548-52263920	chr1:52260527-52263920		chr1:52260527-52260547;chr1:52260548-52260880	chr1:52260526-52260527;chr1:52260547-52260548		93.55	96.88	90.00	96.00	96.30	100.00	100.00	98.36	100.00	100.00	97.78	100.00	100.00	100.00	98.61	100.00	97.30	100.00	97.44	95.96	98.70	91.43	95.00	92.86	95.24	94.19	93.23	94.87	96.83	97.30	95.16	90.62	97.30	88.37	93.94	88.80	97.37	95.56	-1.81	0.238461	0.692777
K	intron_retention	ATP6V0B	chr1	+	chr1:44440780-44441471				chr1:44440779-44440780;chr1:44441471-44441472		1.74	4.00	5.51	1.09	2.01	0.00	0.36	0.81	0.00	0.19	0.00	0.00	0.83	0.91	1.25	0.19	0.18	0.00	1.33	2.12	0.84	2.00	2.41	3.47	4.26	3.51	3.04	0.44	1.18	0.49	3.54	5.53	2.02	2.43	2.50	1.81	1.68	1.93	0.26	0.692846	1.000000
K	cassette	NADK	chr1	-	chr1:1686138-1687696	chr1:1686138-1686812;chr1:1686916-1687696		chr1:1686813-1686915			95.49	100.00	91.23	NA	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.64	100.00	100.00	100.00	100.00	94.44	94.89	97.30	84.62	100.00	96.67	100.00	97.86	93.62	100.00	100.00	100.00	97.79	92.21	92.00	100.00	100.00	96.67	100.00	97.83	-2.17	0.941462	0.985246
K	jcn_only_AA	MED11	chr17	+	chr17:4635202-4636344	chr17:4635202-4636233		chr17:4636234-4636344	chr17:4636344-4636345		0.00	0.00	0.00	NA	33.33	NA	0.00	18.18	10.00	0.00	0.00	NA	0.00	14.29	10.00	0.00	0.00	NA	12.50	NA	16.67	NA	NA	NA	NA	NA	22.22	NA	15.00	16.67	54.55	60.00	33.33	NA	0.00	0.00	0.00	16.23	16.23	0.389123	0.663989
K	intron_retention	ARRB2	chr17	+	chr17:4619329-4619441				chr17:4619328-4619329;chr17:4619441-4619442		3.41	7.50	8.33	0.00	4.94	NA	0.00	0.54	0.00	0.00	0.00	0.00	0.68	0.00	1.10	0.00	0.00	0.00	0.00	5.41	2.33	0.00	5.20	0.00	42.86	2.94	6.15	0.00	2.16	0.00	3.03	5.83	7.69	1.05	2.79	0.00	4.09	2.98	-1.10	0.532635	1.000000
K	intron_retention	SNW1	chr14	-	chr14:78184630-78184709				chr14:78184629-78184630;chr14:78184709-78184710		6.10	0.00	7.84	6.45	5.48	11.11	1.32	3.75	0.97	4.82	2.78	1.28	2.50	0.00	3.37	3.28	2.27	6.41	5.26	7.37	13.46	9.23	7.89	12.33	0.00	0.81	6.25	7.94	3.23	7.23	15.22	10.38	11.11	6.19	7.23	10.92	1.91	4.92	3.01	0.735699	1.000000
K	jcn_only_AA	RHOT2	chr16	+	chr16:720176-720265	chr16:720176-720248		chr16:720249-720265	chr16:720265-720266		74.07	68.18	69.05	NA	84.62	NA	93.33	92.31	77.27	86.67	90.32	93.33	90.48	88.24	91.89	88.00	85.71	78.57	50.00	74.19	63.64	71.43	77.27	82.35	60.00	71.43	76.47	87.50	86.67	72.73	50.00	65.91	NA	58.06	80.85	63.64	68.18	74.13	5.95	0.806996	0.918747
N	cassette	CARD16	chr11	-	chr11:104912447-104915112;chr11:104912447-104915118	chr11:104912447-104914209;chr11:104914273-104915112,chr11:104914273-104915118		chr11:104914210-104914272			45.06	43.90	59.82	43.33	56.19	50.22	45.19	54.52	57.49	47.06	50.88	49.25	51.24	61.99	60.00	45.80	62.92	58.02	45.45	55.33	62.46	52.43	58.66	53.59	31.53	58.08	61.98	44.01	58.86	47.74	61.56	60.97	56.23	45.88	60.53	55.60	45.32	56.70	11.38	0.034494	0.463395
N	alternative_first_exon	AC002398.9,LIN37	chr19	+	chr19:36239660-36243076;chr19:36236893-36243076	chr19:36237425-36243076	chr19:36239262-36239659;chr19:36236736-36236892	chr19:36237320-36237424			4.35	13.64	6.90	0.00	11.76	NA	0.00	0.00	0.00	0.00	0.00	8.33	0.00	6.67	0.00	0.00	NA	0.00	10.00	7.14	5.26	9.09	14.29	8.33	28.57	3.70	6.90	0.00	0.00	6.25	4.55	7.14	20.00	6.67	5.56	5.00	11.82	4.45	-7.37	0.160638	0.357419
N	cassette	SDS	chr12	-	chr12:113835198-113836511;chr12:113835198-113837360;chr12:113835198-113836916	chr12:113835198-113836319;chr12:113836412-113836916,chr12:113836412-113836511,chr12:113836412-113837360		chr12:113836320-113836411			98.33	94.59	98.59	NA	98.80	NA	100.00	99.54	100.00	100.00	99.62	100.00	100.00	98.31	100.00	100.00	98.33	100.00	100.00	99.01	99.02	100.00	99.18	100.00	100.00	99.47	99.61	100.00	100.00	100.00	97.45	98.00	78.43	100.00	98.75	100.00	100.00	98.67	-1.33	0.409592	0.724945
K	intron_retention	SHKBP1	chr19	+	chr19:41095085-41096149				chr19:41095084-41095085;chr19:41096149-41096150		5.71	4.05	4.39	3.33	5.26	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	5.81	5.88	3.76	9.38	8.99	4.76	2.41	5.05	5.13	3.23	2.30	2.38	2.47	4.20	3.53	2.13	2.86	0.00	2.97	3.76	0.79	0.886292	1.000000
K	intron_retention	MYO15B	chr17	+	chr17:73616438-73616546				chr17:73616437-73616438;chr17:73616546-73616547		14.29	0.00	16.67	NA	10.53	7.69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3.23	0.00	5.00	NA	11.76	NA	0.00	0.00	12.00	NA	0.00	0.00	7.69	17.65	3.33	NA	0.00	0.00	1.61	3.85	2.23	0.860607	1.000000
N	alternative_donor	MAP2K2,SEMA6B	chr19	-	chr19:4099413-4101016;chr19:4099413-4101079	chr19:4099413-4099571		chr19:4099572-4101016;chr19:4101017-4101079	chr19:4101016-4101017;chr19:4101079-4101080		12.50	7.32	13.04	7.14	5.41	0.00	0.00	2.33	3.70	2.86	2.13	2.27	2.44	0.00	4.88	2.94	2.86	4.55	7.14	9.09	5.88	7.14	9.09	6.67	16.67	19.23	10.00	5.00	6.06	8.00	14.81	15.91	3.85	13.04	13.79	12.50	5.50	10.79	5.30	0.395251	0.658590
N	alternative_acceptor	MAP3K11	chr11	-	chr11:65375169-65375392;chr11:65375235-65375392;chr11:65375165-65375392	chr11:65375288-65375392		chr11:65375165-65375168;chr11:65375169-65375234;chr11:65375235-65375287	chr11:65375164-65375165;chr11:65375168-65375169;chr11:65375234-65375235		92.73	92.45	94.44	NA	100.00	NA	100.00	95.35	94.74	94.87	100.00	100.00	96.15	94.64	97.73	94.87	95.65	93.33	100.00	91.11	92.59	90.91	95.35	100.00	100.00	93.48	94.92	100.00	100.00	91.67	93.75	86.76	89.47	92.00	87.80	93.75	98.08	93.62	-4.46	0.194934	0.660713
K	intron_retention	AUP1	chr2	-	chr2:74754249-74754374				chr2:74754248-74754249;chr2:74754374-74754375		41.18	40.35	47.37	32.14	29.41	41.94	NA	NA	NA	NA	15.38	NA	NA	NA	NA	NA	10.00	NA	30.77	44.44	34.38	50.00	46.51	41.67	45.76	26.67	23.81	26.67	32.35	29.63	41.67	29.41	38.98	35.00	50.00	40.00	39.66	41.42	1.76	0.543519	1.000000
N	alternative_acceptor	LAMTOR4	chr7	+	chr7:99751141-99751472;chr7:99751141-99753198;chr7:99751141-99753225	chr7:99751141-99751489		chr7:99751473-99751489;chr7:99751490-99753198;chr7:99753199-99753225	chr7:99751489-99751490;chr7:99753198-99753199;chr7:99753225-99753226		92.31	92.12	94.59	97.18	93.89	97.04	97.14	100.00	96.15	100.00	98.41	100.00	97.30	100.00	96.00	97.96	96.77	100.00	93.30	88.46	98.00	100.00	97.18	100.00	91.57	87.50	91.84	100.00	96.36	96.72	92.00	92.50	91.82	96.77	91.38	97.50	92.71	92.16	-0.56	0.846905	0.946163
N	alternative_donor	PMPCA	chr9	+	chr9:139316429-139317546	chr9:139317284-139317546		chr9:139316429-139317283	chr9:139316428-139316429		12.00	1.03	6.67	2.08	1.65	0.00	2.22	NA	0.00	0.00	1.22	NA	2.33	0.00	4.55	1.92	1.69	NA	1.54	5.88	1.85	4.65	3.53	13.64	1.82	NA	11.11	2.27	2.30	4.76	3.57	14.29	1.23	3.03	4.26	6.25	1.68	4.72	3.04	0.241877	0.610791
N	intron_retention		chr3	-	chr3:38167844-38168000				chr3:38167843-38167844;chr3:38168000-38168001		100.00	100.00	95.45	90.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	90.00	88.00	NA	100.00	81.82	100.00	100.00	88.57	83.33	100.00	81.82	89.29	100.00	81.82	100.00	91.67	100.00	100.00	95.00	-5.00	0.988983	1.000000
N	jcn_only_AD	GADD45G	chr9	+	chr9:92220090-92220581	chr9:92220449-92220581		chr9:92220090-92220448	chr9:92220089-92220090		93.94	75.00	88.24	95.04	87.88	95.29	100.00	100.00	99.09	98.73	100.00	100.00	NA	100.00	100.00	99.25	90.91	100.00	84.38	93.85	96.36	97.67	83.87	97.94	87.18	100.00	100.00	98.86	87.18	100.00	94.57	90.14	82.35	94.59	88.24	98.66	84.38	97.28	12.91	0.048328	0.500386
N	cassette	IDH3B	chr20	-	chr20:2640232-2640908	chr20:2640232-2640344;chr20:2640440-2640908		chr20:2640345-2640439			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	94.59	100.00	100.00	100.00	96.30	NA	100.00	100.00	100.00	100.00	100.00	91.67	100.00	85.71	100.00	100.00	100.00	100.00	0.00	0.199016	0.709176
K	jcn_only_AA	MRPS16	chr10	-	chr10:75009077-75011520	chr10:75010750-75011520		chr10:75009077-75010749	chr10:75009076-75009077		96.55	100.00	100.00	100.00	96.30	100.00	98.73	88.00	97.62	97.67	96.55	90.00	97.06	100.00	95.56	98.61	93.22	100.00	100.00	100.00	97.65	100.00	96.67	100.00	100.00	100.00	100.00	100.00	98.67	100.00	100.00	100.00	100.00	96.88	98.00	100.00	100.00	100.00	0.00	0.393584	0.665835
K	intron_retention	INTS9	chr8	-	chr8:28625840-28627405				chr8:28625839-28625840;chr8:28627405-28627406		4.55	0.00	4.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	4.76	0.00	0.00	0.00	0.00	NA	0.00	5.00	4.76	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.474799	1.000000
N	jcn_only_AD	SMCHD1	chr18	+	chr18:2800739-2802525;chr18:2799382-2802525;chr18:2800735-2802525	chr18:2796520-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		92.42	100.00	87.10	NA	100.00	80.00	100.00	91.18	92.86	100.00	94.12	100.00	95.00	94.64	94.59	92.31	100.00	95.83	NA	92.31	NA	100.00	100.00	100.00	NA	90.91	96.30	100.00	100.00	96.43	91.49	100.00	100.00	100.00	81.82	94.74	100.00	91.90	-8.10	0.007542	0.216653
N	cassette	AUP1	chr2	-	chr2:74755134-74756258;chr2:74755134-74755877;chr2:74755449-74756258;chr2:74755134-74756488	chr2:74755449-74755543,chr2:74755134-74755543;chr2:74755617-74756258,chr2:74755617-74756488,chr2:74755617-74755877		chr2:74755544-74755616			89.02	65.57	89.29	85.29	78.57	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	75.00	94.03	89.19	87.50	88.89	83.93	90.62	96.77	92.39	100.00	100.00	96.83	88.46	87.10	71.21	86.30	87.50	90.20	82.81	95.40	12.59	0.141532	0.709176
K	intron_retention		chr14	-	chr14:24614675-24614918				chr14:24614674-24614675;chr14:24614918-24614919		2.70	2.17	4.52	2.36	2.78	4.19	0.00	0.45	0.20	0.79	0.00	0.78	0.00	0.35	0.81	0.66	0.00	0.65	2.46	2.74	1.50	8.57	3.42	14.79	3.12	2.48	2.59	3.23	1.87	4.13	2.79	4.31	0.66	7.74	4.92	11.58	1.42	2.59	1.17	0.810041	1.000000
N	cassette	RAPGEF1	chr9	-	chr9:134518805-134526196;chr9:134518805-134526025	chr9:134518805-134525515;chr9:134525630-134526196,chr9:134525630-134526025		chr9:134525516-134525629			80.95	100.00	74.60	NA	NA	NA	71.17	76.06	77.65	61.96	64.56	76.74	69.89	68.29	77.39	67.94	63.16	71.15	NA	69.23	NA	85.71	61.54	80.77	36.36	76.47	76.92	65.00	62.07	NA	66.67	74.07	NA	59.65	68.42	63.16	70.53	72.65	2.12	0.802525	0.936947
K	intron_retention	HEXDC	chr17	+	chr17:80398952-80399040				chr17:80398951-80398952;chr17:80399040-80399041		31.82	32.76	45.45	NA	42.86	23.08	NA	NA	16.67	NA	NA	NA	NA	0.00	7.69	NA	NA	NA	30.43	25.00	26.32	NA	41.67	NA	20.41	19.44	25.00	36.36	26.32	33.33	17.39	45.00	31.03	NA	NA	25.00	30.73	19.44	-11.29	0.343008	1.000000
K	cassette	CHID1	chr11	-	chr11:884170-899339	chr11:884170-893426;chr11:893520-899339		chr11:893427-893519			100.00	92.23	93.75	88.24	92.19	91.67	93.33	100.00	92.00	95.65	92.00	92.86	93.75	NA	100.00	93.18	93.98	90.00	88.89	84.62	80.65	85.19	94.12	83.33	88.89	NA	84.62	92.00	94.34	96.88	100.00	91.67	87.69	84.00	90.48	90.20	90.56	100.00	9.44	0.260467	0.709176
K	intron_retention	NMB	chr15	-	chr15:85198641-85200406				chr15:85198640-85198641;chr15:85200406-85200407		0.00	0.00	14.29	0.00	4.76	1.79	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.33	NA	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	12.12	11.76	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.813605	1.000000
K	alternative_acceptor	SF3B2	chr11	+	chr11:65831201-65835419	chr11:65831201-65835416		chr11:65835417-65835419	chr11:65835419-65835420		95.19	100.00	97.58	94.52	100.00	100.00	100.00	93.65	96.59	95.52	98.65	100.00	96.15	98.31	95.83	97.10	93.42	91.67	97.37	96.20	96.49	100.00	95.58	100.00	92.75	96.00	94.96	100.00	100.00	93.27	97.25	94.48	96.77	100.00	95.51	100.00	97.07	96.10	-0.97	0.428768	0.740679
N	alternative_donor	PNISR	chr6	-	chr6:99848188-99848419;chr6:99848188-99850415	chr6:99848188-99848462		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		3.23	0.00	1.56	NA	0.00	NA	10.00	NA	0.00	10.00	0.00	NA	0.00	NA	5.00	9.09	5.00	NA	0.00	3.45	0.00	4.35	2.27	3.45	0.00	3.85	1.89	4.76	2.86	7.69	9.09	2.04	0.00	5.41	4.76	2.70	0.00	3.65	3.65	0.175472	0.563271
K	jcn_only_AA	BAIAP2	chr17	+	chr17:79073881-79084076	chr17:79073881-79077301		chr17:79077302-79084076	chr17:79084076-79084077		92.31	95.83	NA	NA	90.00	NA	100.00	94.12	NA	96.77	92.06	90.91	100.00	100.00	NA	100.00	94.12	100.00	76.92	NA	NA	100.00	92.68	90.00	100.00	NA	NA	NA	100.00	NA	91.67	NA	78.95	94.74	91.30	91.67	97.91	93.22	-4.70	0.614505	0.824272
K	intron_retention		chr2	+	chr2:241515028-241515951				chr2:241515027-241515028;chr2:241515951-241515952		3.57	6.76	4.00	0.00	2.44	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	NA	0.00	0.00	0.00	0.00	4.26	NA	0.00	0.00	3.70	0.00	3.77	NA	0.00	0.00	0.00	0.00	2.08	7.69	0.00	0.00	0.00	0.971226	1.000000
N	alternative_acceptor	CXorf38	chrX	-	chrX:40490026-40495784	chrX:40491151-40495784		chrX:40490026-40491150	chrX:40490025-40490026		17.39	0.00	10.00	0.00	0.00	2.38	0.00	0.00	3.70	0.00	0.00	5.26	0.00	0.00	3.03	0.00	3.23	0.00	0.00	9.09	4.76	NA	9.09	9.09	NA	10.34	6.67	5.88	NA	2.56	9.52	5.26	0.00	4.35	7.69	7.69	0.00	9.30	9.30	0.037016	0.560254
N	jcn_only_AD	FCGR2A,RP11-25K21.6	chr1	+	chr1:161484665-161487764;chr1:161484391-161487764	chr1:161483723-161487764		chr1:161483723-161484390;chr1:161484391-161484664	chr1:161483722-161483723;chr1:161484390-161484391		100.00	100.00	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.52	100.00	100.00	99.66	99.73	100.00	100.00	99.74	100.00	100.00	100.00	99.74	100.00	100.00	100.00	97.85	100.00	99.60	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.697897	0.845069
K	alternative_last_exon	C15orf57	chr15	-	chr15:40824502-40849414;chr15:40846327-40849414	chr15:40831555-40849414	chr15:40823540-40824501;chr15:40845298-40846326	chr15:40831428-40831554			4.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	2.94	0.00	3.12	1.56	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	12.00	2.70	2.63	0.00	2.70	0.00	0.00	0.00	0.00	0.00	2.86	2.17	1.47	1.80	0.33	0.541703	0.690115
K	intron_retention	FDXR	chr17	-	chr17:72860470-72860601				chr17:72860469-72860470;chr17:72860601-72860602		6.67	3.66	6.90	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	8.16	0.00	5.41	NA	0.00	NA	11.11	7.69	12.50	NA	NA	NA	8.57	12.33	11.76	7.69	4.55	NA	5.91	7.18	1.27	0.675379	1.000000
K	intron_retention	PABPC4	chr1	-	chr1:40029595-40030094				chr1:40029594-40029595;chr1:40030094-40030095		13.33	0.00	6.67	0.00	3.45	NA	0.85	0.00	0.00	0.00	0.00	0.00	2.06	0.00	6.25	1.14	0.00	0.00	0.00	14.29	8.33	4.88	3.90	4.76	0.00	15.79	0.00	5.41	2.78	3.70	16.67	18.75	0.00	8.06	8.20	4.35	0.00	13.81	13.81	0.071738	1.000000
K	intron_retention	LEMD2	chr6	-	chr6:33739436-33739473				chr6:33739435-33739436;chr6:33739473-33739474		100.00	94.53	96.72	100.00	91.89	94.05	88.89	100.00	95.83	100.00	100.00	NA	92.00	100.00	92.31	100.00	100.00	NA	92.86	90.32	94.59	100.00	94.23	100.00	97.30	100.00	96.49	90.91	100.00	100.00	89.58	100.00	90.74	92.59	94.74	92.31	92.43	100.00	7.57	0.282893	1.000000
N	cassette	STAT5A	chr17	+	chr17:40460352-40462524;chr17:40460966-40462524	chr17:40460966-40461064,chr17:40460352-40461064;chr17:40461117-40462524		chr17:40461065-40461116			91.30	100.00	100.00	100.00	100.00	94.32	100.00	92.86	88.89	90.00	88.46	87.69	92.59	100.00	91.18	92.93	100.00	100.00	100.00	100.00	100.00	100.00	96.15	97.14	NA	100.00	100.00	100.00	100.00	90.57	100.00	100.00	100.00	100.00	100.00	95.35	100.00	100.00	0.00	0.617893	0.860302
K	intron_retention	ABTB1	chr3	+	chr3:127396687-127398827				chr3:127396686-127396687;chr3:127398827-127398828		18.60	16.67	20.00	7.69	10.39	6.90	5.45	6.45	0.00	0.00	2.44	0.00	8.00	9.09	15.38	0.00	0.00	NA	12.66	18.52	12.90	13.33	9.43	0.00	15.75	20.31	28.85	13.64	7.81	0.00	10.53	23.40	10.98	16.67	15.00	5.88	11.82	14.52	2.70	0.999458	1.000000
N	alternative_acceptor	MFSD11	chr17	+	chr17:74772624-74777122;chr17:74772624-74774269;chr17:74772624-74774301	chr17:74772624-74774282		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		0.00	11.76	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	6.25	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.203427	0.668672
N	jcn_only_AD		chr11	-	chr11:62383272-62384458	chr11:62383272-62383977					100.00	100.00	95.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	90.00	96.04	100.00	100.00	100.00	100.00	100.00	93.10	93.75	96.59	96.43	100.00	100.00	100.00	100.00	0.00	0.488397	0.734601
N	alternative_acceptor	SELPLG	chr12	-	chr12:109017514-109017693;chr12:109017574-109017693	chr12:109017664-109017693		chr12:109017514-109017573;chr12:109017574-109017663	chr12:109017513-109017514;chr12:109017573-109017574		97.50	100.00	98.46	NA	100.00	NA	99.20	91.67	98.98	97.30	99.02	95.65	97.86	93.33	95.73	96.77	99.22	91.30	NA	96.43	100.00	NA	97.22	NA	94.74	92.31	98.31	90.91	97.87	NA	NA	95.92	NA	92.86	95.83	95.45	98.53	93.33	-5.20	0.058625	0.570243
N	cassette	PFDN1	chr5	-	chr5:139661119-139701376;chr5:139661119-139699469;chr5:139661119-139682625	chr5:139661119-139680000;chr5:139680168-139701376,chr5:139680168-139699469,chr5:139680168-139682625		chr5:139680001-139680167			86.05	76.47	91.18	NA	86.67	NA	88.73	94.44	92.86	86.67	95.61	89.36	92.41	93.75	95.77	95.00	93.91	84.31	NA	87.50	82.76	85.29	95.35	93.55	NA	91.84	89.23	93.33	94.20	81.25	79.31	86.44	100.00	94.74	91.80	96.30	90.57	89.67	-0.90	0.918745	0.978689
K	cassette	ZNF638	chr2	+	chr2:71654545-71658456	chr2:71654545-71655660;chr2:71655782-71658456		chr2:71655661-71655781			88.00	100.00	100.00	100.00	100.00	100.00	NA	97.06	92.86	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	95.45	97.06	100.00	100.00	100.00	100.00	97.30	97.30	100.00	100.00	90.91	92.00	94.87	90.48	94.74	100.00	90.00	100.00	96.25	-3.75	0.259343	0.709176
K	cassette	SNX2	chr5	+	chr5:122161889-122163269	chr5:122161889-122163073;chr5:122163155-122163269		chr5:122163074-122163154			98.84	100.00	98.73	100.00	99.41	100.00	98.29	98.69	100.00	94.83	98.05	93.08	98.16	98.36	97.89	97.01	98.95	95.31	99.56	98.49	99.27	100.00	99.08	95.00	100.00	100.00	98.81	98.39	99.53	98.05	95.86	98.82	99.57	100.00	98.22	96.55	99.56	98.59	-0.97	0.207882	0.709176
K	alternative_acceptor	ZFAND2A	chr7	-	chr7:1192768-1195088;chr7:1192878-1195088	chr7:1192861-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		85.37	93.44	87.80	86.25	88.00	82.24	100.00	96.67	94.29	90.70	100.00	90.91	100.00	93.10	96.88	89.71	100.00	90.48	81.25	85.71	88.24	84.78	88.57	86.67	80.70	90.57	83.78	87.18	83.33	87.30	88.00	81.97	90.24	87.10	89.74	87.10	91.84	89.28	-2.56	0.800328	0.925906
N	jcn_only_AA	NRD1	chr1	-	chr1:52260881-52263920;chr1:52260548-52263920	chr1:52260527-52263920		chr1:52260527-52260547;chr1:52260548-52260880	chr1:52260526-52260527;chr1:52260547-52260548		99.15	100.00	95.58	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.38	100.00	100.00	100.00	96.72	93.55	100.00	100.00	97.89	97.37	100.00	100.00	0.00	0.255815	0.663989
K	intron_retention		chr14	+	chr14:23239835-23240013				chr14:23239834-23239835;chr14:23240013-23240014		3.45	3.03	2.26	0.00	3.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	1.75	2.44	3.33	6.06	0.00	12.50	2.26	2.33	3.28	2.70	0.00	3.03	2.78	1.37	2.80	3.53	0.00	1.19	1.19	0.570863	1.000000
K	intron_retention	EED	chr11	+	chr11:85988181-85988959				chr11:85988180-85988181;chr11:85988959-85988960		15.62	15.79	18.92	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.45	3.33	5.88	0.00	7.69	0.00	7.69	12.50	0.00	0.00	0.00	4.55	15.91	9.09	5.56	0.00	4.55	2.50	4.00	1.50	0.816177	1.000000
K	intron_retention	TXNIP	chr1	+	chr1:145442254-145442264				chr1:145442253-145442254;chr1:145442264-145442265		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	90.97	92.66	0.00	80.00	87.34	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.999897	1.000000
N	jcn_only_AD		chr9	-	chr9:116035719-116037657;chr9:116035719-116037509;chr9:116035719-116036839	chr9:116035719-116037661		chr9:116036840-116037509;chr9:116037510-116037657;chr9:116037658-116037661	chr9:116037509-116037510;chr9:116037657-116037658;chr9:116037661-116037662		87.50	100.00	92.86	100.00	100.00	100.00	87.50	92.50	93.55	91.18	88.46	97.22	100.00	100.00	100.00	100.00	100.00	90.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	89.47	100.00	88.57	100.00	100.00	100.00	100.00	93.33	100.00	93.69	-6.31	0.216382	0.657607
K	intron_retention	MLLT6	chr17	+	chr17:36876823-36876911				chr17:36876822-36876823;chr17:36876911-36876912		0.00	6.67	2.52	0.00	7.14	26.32	0.00	0.00	0.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.76	0.00	5.41	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	1.14	15.38	0.00	2.82	1.95	0.00	0.00	0.00	0.487119	1.000000
K	intron_retention	PSME2	chr14	-	chr14:24612699-24612793				chr14:24612698-24612699;chr14:24612793-24612794		3.37	0.75	3.21	5.46	3.82	5.33	0.00	0.00	0.15	0.00	0.00	1.52	0.00	0.48	0.61	0.51	0.00	1.48	2.03	3.47	1.99	6.00	4.08	8.99	2.61	2.80	3.42	6.11	2.33	4.84	5.42	3.97	3.27	6.57	1.96	7.97	1.39	3.08	1.70	0.514946	1.000000
K	intron_retention	MADD	chr11	+	chr11:47348359-47350208				chr11:47348358-47348359;chr11:47350208-47350209		20.45	20.00	23.73	7.14	4.35	NA	0.00	8.82	0.00	5.00	4.00	NA	0.00	0.00	3.45	2.63	1.89	0.00	8.33	12.00	8.82	11.43	13.46	14.29	23.33	19.10	9.80	5.00	7.14	7.14	18.33	20.31	16.67	13.04	17.02	19.44	12.50	15.16	2.66	0.934706	1.000000
N	alternative_acceptor	NAA20	chr20	+	chr20:20003125-20006320;chr20:20003125-20005759	chr20:20003125-20004065		chr20:20004066-20005759;chr20:20005760-20006320	chr20:20005759-20005760;chr20:20006320-20006321		1.75	0.00	3.57	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.75	0.00	0.00	0.00	2.08	0.00	2.08	2.35	4.08	0.00	9.09	2.08	0.00	1.67	0.00	0.00	3.33	0.00	6.06	3.92	2.44	0.00	0.88	0.88	0.195024	0.660713
K	alternative_acceptor	HLA-F,LY86	chr6	+	chr6:29691705-29691966	chr6:29691705-29691949		chr6:29691950-29691966	chr6:29691966-29691967		92.98	100.00	95.41	92.50	97.44	93.69	97.33	98.75	98.92	99.35	99.04	98.98	97.87	97.37	97.83	97.26	98.25	98.60	100.00	92.11	96.36	90.32	100.00	90.84	NA	94.59	97.16	90.57	100.00	92.73	94.90	93.85	100.00	89.19	95.45	93.99	100.00	94.75	-5.25	0.011552	0.475629
N	alternative_acceptor	USE1	chr19	+	chr19:17326880-17326977	chr19:17326880-17326951		chr19:17326952-17326977	chr19:17326977-17326978		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.26	3.80	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.17	2.86	2.22	2.86	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention		chr8	+	chr8:145161578-145161737				chr8:145161577-145161578;chr8:145161737-145161738		5.56	6.63	4.65	2.56	3.05	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	2.73	4.41	4.65	3.75	3.03	3.39	1.92	3.80	3.65	1.06	2.00	1.15	13.91	9.09	8.66	3.23	5.66	2.31	2.33	4.11	1.78	0.898148	1.000000
N	alternative_donor	MAZ	chr16	+	chr16:29821549-29822326	chr16:29822056-29822326		chr16:29821549-29822055	chr16:29821548-29821549		97.22	93.10	95.83	92.31	96.08	70.00	96.60	100.00	100.00	92.68	97.44	100.00	97.50	100.00	100.00	100.00	96.15	100.00	82.50	100.00	100.00	92.68	98.57	100.00	82.43	100.00	100.00	100.00	98.16	100.00	100.00	94.44	82.93	98.31	100.00	100.00	88.02	100.00	11.98	0.017504	0.264212
K	alternative_donor	C7orf49	chr7	-	chr7:134852560-134853720;chr7:134852560-134853682;chr7:134852560-134853500	chr7:134852560-134853537		chr7:134853501-134853537;chr7:134853538-134853682;chr7:134853683-134853720	chr7:134853537-134853538;chr7:134853682-134853683;chr7:134853720-134853721		2.86	3.45	3.23	0.00	12.50	20.29	10.81	14.29	11.63	25.00	21.95	10.00	11.11	10.00	0.00	13.64	10.53	17.65	5.26	18.75	22.22	NA	4.00	4.35	16.13	31.43	20.00	10.00	16.67	10.81	19.15	2.22	15.38	3.45	3.85	5.00	10.96	16.52	5.56	0.238190	0.610360
K	intron_retention	ACADVL	chr17	+	chr17:7125401-7125495				chr17:7125400-7125401;chr17:7125495-7125496		38.07	31.75	47.79	28.00	37.21	21.43	2.17	4.21	6.25	2.76	6.33	0.80	6.25	12.66	14.93	3.18	9.18	1.21	22.22	38.61	13.11	49.12	60.00	35.44	43.24	30.77	41.25	32.56	41.98	11.39	32.73	50.00	23.81	42.71	56.21	26.19	23.02	31.75	8.73	0.826225	1.000000
K	alternative_donor	BDH2,RCHY1	chr4	-	chr4:104006620-104007636	chr4:104006620-104006855		chr4:104006856-104007636	chr4:104007636-104007637		3.45	5.26	8.45	NA	4.17	NA	3.03	3.57	2.22	0.00	5.56	0.00	3.85	4.55	10.91	0.00	5.00	NA	0.00	2.70	2.04	0.00	2.78	9.09	7.69	6.45	6.15	10.00	3.57	4.17	3.51	6.31	3.23	4.00	12.00	6.06	3.54	3.54	0.00	0.872439	0.968901
K	intron_retention		chr12	-	chr12:6659063-6659860				chr12:6659062-6659063;chr12:6659860-6659861		8.70	4.35	2.50	NA	8.33	NA	2.44	0.00	0.00	NA	4.48	NA	3.23	6.67	0.00	NA	2.78	NA	5.56	0.00	0.00	NA	6.78	NA	48.00	26.92	43.90	NA	45.45	NA	0.00	0.00	0.00	6.25	15.22	0.00	3.79	3.33	-0.46	0.959713	1.000000
K	jcn_only_AA	BABAM1	chr19	+	chr19:17378337-17379564;chr19:17378337-17379610	chr19:17378337-17379602		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		81.82	88.57	89.13	NA	73.68	NA	80.88	75.00	69.39	87.18	77.46	78.57	77.78	80.65	76.09	79.55	81.01	84.21	84.62	78.95	73.08	NA	67.65	83.33	81.82	65.00	79.55	77.78	77.78	66.67	89.47	82.93	90.48	86.96	84.62	92.00	83.22	79.80	-3.42	0.188360	0.663989
N	alternative_donor	HGS	chr17	+	chr17:79652100-79652634;chr17:79651134-79652634	chr17:79651922-79652634		chr17:79651134-79651921;chr17:79651922-79652099	chr17:79651133-79651134;chr17:79651921-79651922		3.33	8.33	10.91	NA	NA	NA	2.94	0.00	0.00	0.00	0.00	0.00	2.17	1.85	1.61	2.11	2.50	0.00	NA	2.33	NA	3.23	6.06	4.00	4.76	2.70	6.38	3.33	4.17	4.17	0.00	3.17	NA	5.56	4.88	5.36	3.85	2.09	-1.76	0.126794	0.540946
K	intron_retention	TNK2	chr3	-	chr3:195594136-195594231				chr3:195594135-195594136;chr3:195594231-195594232		4.26	7.79	4.76	NA	5.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.14	6.12	0.00	NA	8.70	NA	5.13	1.09	0.00	NA	0.00	NA	8.51	7.69	12.00	NA	7.14	0.00	6.13	2.67	-3.46	0.686880	1.000000
N	alternative_acceptor	SLC11A2	chr12	-	chr12:51380704-51382164;chr12:51380970-51382164	chr12:51375587-51382164		chr12:51375587-51380703;chr12:51380704-51380969	chr12:51375586-51375587;chr12:51380703-51380704		60.38	68.97	67.65	43.90	56.25	36.11	64.29	75.00	88.71	56.06	51.43	61.90	77.14	79.21	80.39	64.29	57.14	60.00	41.18	68.33	64.71	47.37	41.94	50.88	52.94	61.84	69.57	54.39	53.85	49.44	63.64	66.67	45.00	52.17	51.67	61.29	58.62	65.98	7.37	0.174972	0.660713
K	alternative_acceptor	HGS	chr17	+	chr17:79663560-79669028	chr17:79663560-79663636		chr17:79663637-79669028	chr17:79669028-79669029		56.25	32.50	66.67	44.00	57.14	37.04	NA	NA	70.00	NA	NA	NA	70.00	NA	69.23	92.31	NA	NA	23.40	52.63	33.33	47.83	50.00	60.00	38.64	61.54	57.14	52.63	52.38	50.00	45.16	48.65	23.73	66.67	62.50	100.00	32.50	54.44	21.94	0.136752	0.635210
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100961867-100962534;chr9:100961819-100962534	chr9:100961871-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		96.43	100.00	92.00	92.31	87.88	NA	89.47	94.74	91.67	85.71	97.78	NA	86.36	93.33	NA	85.71	94.74	NA	78.95	92.86	86.05	90.00	94.12	NA	100.00	89.66	88.00	81.25	82.89	NA	88.73	85.37	90.48	91.18	88.64	90.00	89.97	93.09	3.12	0.637623	0.862563
N	alternative_donor	EPB41L3	chr18	-	chr18:55269016-55269693	chr18:55269016-55269586		chr18:55269587-55269693	chr18:55269693-55269694		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657675
K	alternative_last_exon	GAS2L1	chr22	+	chr22:29706989-29707964;chr22:29706989-29708131	chr22:29706989-29707451	chr22:29708132-29708774	chr22:29707452-29707639			25.45	9.38	30.77	5.26	13.27	5.56	35.94	34.21	37.14	31.58	34.38	NA	35.82	35.56	39.29	38.71	37.21	NA	6.96	22.50	18.18	16.67	26.76	NA	6.82	31.82	27.78	27.78	25.35	NA	12.50	20.45	7.69	22.73	25.93	20.00	8.54	28.63	20.10	0.190342	0.414077
K	intron_retention	SERPINH1	chr11	+	chr11:75283445-75283595				chr11:75283444-75283445;chr11:75283595-75283596		100.00	92.75	100.00	NA	91.30	NA	86.36	89.74	100.00	NA	100.00	NA	100.00	91.89	100.00	NA	100.00	NA	79.17	83.33	75.76	NA	94.44	NA	100.00	91.18	95.00	NA	93.33	NA	100.00	77.78	71.43	NA	100.00	NA	89.56	91.53	1.98	0.650940	1.000000
N	alternative_donor	C11orf73	chr11	+	chr11:86055563-86055644;chr11:86048535-86055644	chr11:86048573-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		100.00	100.00	96.15	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	NA	100.00	100.00	100.00	95.00	96.30	100.00	100.00	100.00	NA	100.00	100.00	94.12	96.00	84.21	100.00	100.00	0.00	0.928259	0.984606
N	jcn_only_AD	SNN	chr16	+	chr16:11769026-11769830;chr16:11764019-11769830;chr16:11762397-11769830	chr16:11764564-11769830		chr16:11762397-11764018;chr16:11764019-11764563;chr16:11764564-11769025	chr16:11762396-11762397;chr16:11764018-11764019;chr16:11764563-11764564		0.00	0.00	0.00	0.00	NA	5.08	2.15	2.99	0.00	0.93	0.00	6.88	0.00	3.75	0.00	0.74	0.00	4.82	0.00	0.00	0.00	0.00	0.00	5.36	0.00	0.00	NA	3.33	0.00	4.60	0.00	NA	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.370315	0.657607
K	cassette	RNH1	chr11	-	chr11:502250-506608;chr11:502182-506608	chr11:502250-504823,chr11:502182-504823;chr11:504889-506608		chr11:504824-504888			NA	45.95	NA	63.64	62.86	NA	82.19	100.00	84.62	91.38	88.37	82.76	72.17	90.48	65.38	78.57	81.42	81.25	30.00	NA	50.00	54.17	64.06	69.57	65.00	93.75	NA	85.71	76.19	75.68	81.82	NA	47.62	67.86	67.86	66.13	56.31	92.12	35.81	0.005782	0.255099
K	intron_retention		chr19	+	chr19:1422396-1425876				chr19:1422395-1422396;chr19:1425876-1425877		2.86	0.00	6.38	0.00	2.70	NA	3.37	3.70	2.86	2.83	0.72	0.00	1.60	0.00	6.17	3.64	1.12	0.00	NA	4.76	0.00	5.13	1.56	9.76	0.00	3.33	3.51	3.33	3.90	4.17	0.00	0.00	0.00	10.53	12.24	8.62	0.00	3.09	3.09	0.716036	1.000000
K	intron_retention		chr3	-	chr3:156866379-156867075				chr3:156866378-156866379;chr3:156867075-156867076		9.38	3.77	8.59	4.17	4.26	4.76	0.00	6.90	4.55	0.00	0.00	8.33	9.09	0.00	2.78	5.88	0.00	0.00	10.53	10.00	13.04	11.58	6.45	9.49	0.00	11.65	6.74	7.89	4.65	8.60	13.29	10.94	13.89	10.46	10.53	7.85	6.43	9.69	3.26	0.863647	1.000000
N	jcn_only_AD	STARD10	chr11	-	chr11:72470427-72492019;chr11:72470427-72491133;chr11:72470427-72492157	chr11:72470427-72492106		chr11:72491134-72492019;chr11:72492020-72492106;chr11:72492107-72492157	chr11:72492019-72492020;chr11:72492106-72492107;chr11:72492157-72492158		11.54	20.00	12.77	0.00	12.82	12.50	NA	NA	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	14.89	25.00	10.26	4.76	11.11	5.26	6.67	8.33	8.11	10.53	0.00	0.00	17.39	17.78	20.00	4.55	9.38	11.76	17.45	11.54	-5.91	0.594002	0.799292
N	cassette	APOC1	chr19	+	chr19:45418475-45422429;chr19:45418207-45422429	chr19:45418207-45419446,chr19:45418475-45419446;chr19:45419617-45422429		chr19:45419447-45419616			100.00	96.38	95.00	97.14	95.69	98.01	97.93	99.47	99.48	98.31	96.51	98.24	99.39	100.00	100.00	97.89	99.10	99.19	97.50	95.92	97.87	97.78	96.36	98.54	95.46	100.00	94.77	95.65	91.70	96.38	98.37	97.78	94.96	97.41	95.76	98.86	96.94	99.73	2.80	0.058038	0.601462
N	alternative_acceptor	DMAP1	chr1	+	chr1:44685150-44685483;chr1:44685150-44685451	chr1:44685150-44685477		chr1:44685452-44685477;chr1:44685478-44685483	chr1:44685477-44685478;chr1:44685483-44685484		93.33	100.00	95.00	100.00	96.30	90.91	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	93.75	NA	100.00	92.86	94.12	NA	91.67	90.91	100.00	96.00	100.00	90.91	100.00	100.00	100.00	100.00	0.00	0.174997	0.660713
N	cassette	CD47	chr3	-	chr3:107766140-107776323;chr3:107766140-107769424	chr3:107766140-107768465;chr3:107768499-107776323,chr3:107768499-107769424		chr3:107768466-107768498			14.58	25.58	0.00	12.00	12.00	12.94	8.33	2.33	0.00	8.33	6.90	15.62	7.69	2.70	0.00	10.00	12.90	11.90	6.98	13.64	4.88	15.38	11.11	14.29	18.52	5.08	3.03	12.50	9.52	10.20	4.35	8.57	10.20	18.75	5.26	8.82	9.27	4.71	-4.55	0.163447	0.709176
K	jcn_only_AA	C12orf57	chr12	+	chr12:7053337-7053638	chr12:7053337-7053542		chr12:7053543-7053638	chr12:7053638-7053639		0.00	0.00	5.71	0.00	2.78	3.77	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	5.00	7.14	13.33	6.67	0.00	0.00	0.00	4.00	0.00	0.00	0.00	6.90	6.82	0.00	4.76	0.00	9.52	0.00	2.50	2.50	0.189702	0.663989
N	alternative_acceptor	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407084-4407386;chr11:4407141-4407386;chr11:4406413-4407386	chr11:4407110-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		0.00	0.00	0.00	2.04	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	3.64	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.79	0.81	5.41	0.00	0.00	0.00	2.71	0.00	-2.71	0.092339	0.597021
N	cassette	EMP3	chr19	+	chr19:48829306-48830777;chr19:48828868-48832608;chr19:48828868-48830777;chr19:48829311-48830777	chr19:48829306-48830086,chr19:48829311-48830086,chr19:48828868-48830086;chr19:48830180-48832608,chr19:48830180-48830777		chr19:48830087-48830179			96.61	89.00	96.82	89.52	90.86	86.68	98.69	98.56	98.84	94.93	96.04	95.26	96.17	98.54	98.15	94.23	94.55	95.01	92.08	96.31	93.46	92.66	91.28	93.11	84.41	95.87	93.47	93.08	91.77	93.33	95.96	93.64	88.11	93.32	94.14	94.66	90.54	96.46	5.92	0.050258	0.564103
K	intron_retention	TBC1D2	chr9	-	chr9:100963947-100965569				chr9:100963946-100963947;chr9:100965569-100965570		4.08	6.12	1.96	0.00	2.38	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.86	1.52	0.00	0.00	1.50	0.00	0.00	2.04	0.00	0.00	0.86	0.00	4.46	2.67	2.44	3.85	3.12	0.00	1.22	1.78	0.56	0.621490	1.000000
K	coord_cassette	SAT2	chr17	-	chr17:7530112-7530680	chr17:7530112-7530260;chr17:7530363-7530460;chr17:7530545-7530680		chr17:7530261-7530362;chr17:7530461-7530544			100.00	90.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	95.00	96.30	NA	95.24	NA	100.00	98.59	100.00	100.00	97.83	100.00	94.74	94.74	95.45	94.12	100.00	100.00	97.72	99.30	1.57	0.507020	0.715788
N	jcn_only_AD	SMARCB1	chr22	+	chr22:24144152-24145481;chr22:24143323-24145481;chr22:24143269-24145481	chr22:24143158-24145481		chr22:24143158-24143268;chr22:24143269-24143322;chr22:24143323-24144151	chr22:24143157-24143158;chr22:24143268-24143269;chr22:24143322-24143323		0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	6.67	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.664498	0.827798
N	alternative_donor	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365092-62366056;chr20:62365157-62366056	chr20:62365065-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		16.22	23.08	21.21	22.22	17.39	15.00	9.09	19.05	22.73	22.58	17.65	17.65	20.00	15.00	13.04	22.58	11.11	17.65	5.56	9.09	10.34	11.11	13.04	8.00	10.53	9.09	8.57	12.90	9.09	10.53	10.00	10.53	9.52	13.64	20.83	10.00	10.02	12.50	2.48	0.973935	0.994374
N	alternative_acceptor	AP1B1	chr22	-	chr22:29782977-29784412;chr22:29765379-29784412;chr22:29763257-29784412	chr22:29763260-29784412		chr22:29763257-29763259;chr22:29763260-29765378;chr22:29765379-29782976	chr22:29763256-29763257;chr22:29763259-29763260;chr22:29765378-29765379		100.00	94.12	96.67	NA	NA	NA	97.96	96.77	95.12	98.39	97.67	98.63	97.78	98.08	96.15	96.92	98.99	97.22	NA	95.65	NA	85.71	95.77	90.91	100.00	95.83	100.00	NA	97.50	NA	NA	94.12	NA	92.31	98.41	97.44	97.87	96.77	-1.10	0.896935	0.963205
K	alternative_donor	NOP56	chr20	+	chr20:2636681-2637046	chr20:2636861-2637046		chr20:2636681-2636860	chr20:2636680-2636681		11.54	28.57	16.00	12.50	14.29	0.00	11.36	0.00	2.38	5.04	8.57	4.00	18.75	0.00	5.66	6.71	10.00	10.00	24.00	5.26	12.12	15.25	31.48	16.67	33.33	7.14	13.89	11.76	16.33	4.65	17.39	20.00	25.93	12.50	25.71	17.95	24.96	6.20	-18.77	0.002614	0.124802
K	jcn_only_AA	EIF4G1	chr3	+	chr3:184041030-184041195	chr3:184041030-184041192		chr3:184041193-184041195	chr3:184041195-184041196		29.55	15.15	37.84	NA	NA	NA	38.00	31.03	34.41	35.36	37.13	35.63	32.17	31.18	36.36	38.32	34.04	27.36	NA	30.77	38.46	39.53	52.05	40.28	41.67	30.00	41.18	48.57	38.46	35.00	53.33	43.18	NA	42.86	40.32	42.67	35.09	30.90	-4.19	0.727941	0.877626
N	jcn_only_AA	TRIM28	chr19	+	chr19:59060144-59060228;chr19:59060144-59060206;chr19:59060144-59060231	chr19:59060144-59060252		chr19:59060207-59060228;chr19:59060229-59060231;chr19:59060232-59060252	chr19:59060228-59060229;chr19:59060231-59060232;chr19:59060252-59060253		0.00	0.00	4.12	0.00	8.20	0.00	1.63	0.00	3.60	2.56	3.57	0.78	1.91	4.23	1.55	2.86	0.00	2.87	0.00	5.13	1.89	2.50	3.49	4.26	0.00	5.71	3.37	0.00	3.66	5.17	5.71	3.19	12.50	0.00	4.35	0.00	0.81	4.68	3.86	0.739014	0.883015
N	cassette	NPL	chr1	+	chr1:182764976-182781290;chr1:182759040-182781290;chr1:182763575-182781290	chr1:182764976-182772832,chr1:182763575-182772832,chr1:182759040-182772832;chr1:182772907-182781290		chr1:182772833-182772906			97.26	100.00	95.93	90.91	92.68	NA	97.11	98.11	100.00	100.00	97.93	97.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	96.30	100.00	95.62	93.55	94.74	95.16	97.30	93.75	95.05	90.00	100.00	91.57	100.00	95.88	97.83	95.58	100.00	97.79	-2.21	0.599293	0.849488
K	intron_retention		chr11	+	chr11:74914011-74914351				chr11:74914010-74914011;chr11:74914351-74914352		13.01	13.60	20.45	0.00	15.52	0.00	0.79	0.00	0.00	0.00	2.69	0.00	1.86	2.68	0.00	1.11	3.37	0.00	6.85	21.84	10.53	11.11	23.97	0.00	14.55	7.58	18.75	12.00	22.29	0.00	0.00	25.00	3.17	9.80	15.46	0.00	5.01	5.13	0.12	0.979725	1.000000
N	jcn_only_AA	NPC1	chr18	-	chr18:21099968-21113318;chr18:21103201-21113318;chr18:21109319-21113318;chr18:21086607-21113318;chr18:21112249-21113318;chr18:21109692-21113318	chr18:21102871-21113318		chr18:21086607-21099967;chr18:21099968-21102870;chr18:21102871-21103200;chr18:21103201-21109318;chr18:21109319-21109691;chr18:21109692-21112248	chr18:21086606-21086607;chr18:21099967-21099968;chr18:21102870-21102871;chr18:21103200-21103201;chr18:21109318-21109319;chr18:21109691-21109692		2.01	0.00	3.37	2.94	0.00	0.00	0.00	1.43	2.08	1.56	2.16	0.00	5.00	4.62	0.00	0.00	1.47	0.00	0.00	0.78	0.00	0.47	1.30	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	1.80	2.63	0.00	0.00	1.10	1.10	0.709915	0.871935
N	cassette	RNASET2,RP11-514O12.4	chr6	-	chr6:167344607-167365975;chr6:167356578-167365975;chr6:167356578-167369584	chr6:167344607-167360169,chr6:167356578-167360169;chr6:167360228-167369584,chr6:167360228-167365975		chr6:167360170-167360227			91.03	96.33	100.00	98.89	100.00	99.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	98.28	96.36	97.18	99.21	99.69	99.47	100.00	94.67	97.67	100.00	100.00	100.00	100.00	100.00	99.57	100.00	100.00	100.00	99.78	96.99	-2.79	0.158745	0.709176
N	cassette	FES	chr15	+	chr15:91436056-91436520	chr15:91436056-91436329;chr15:91436425-91436520		chr15:91436330-91436424			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	98.41	100.00	100.00	NA	100.00	NA	87.23	NA	100.00	NA	100.00	NA	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.304303	0.709176
N	cassette	SERBP1	chr1	-	chr1:67881023-67889882	chr1:67881023-67885691;chr1:67885870-67889882		chr1:67885692-67885869			100.00	95.69	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	98.21	100.00	100.00	98.91	100.00	100.00	100.00	93.75	96.55	100.00	98.40	100.00	97.67	100.00	100.00	0.00	0.648946	0.870529
N	jcn_only_AD	CD40	chr20	+	chr20:44756864-44756968;chr20:44756848-44756968	chr20:44756876-44756968		chr20:44756848-44756863;chr20:44756864-44756875	chr20:44756847-44756848;chr20:44756863-44756864		4.59	0.00	2.99	0.00	0.00	1.64	0.00	1.78	2.52	1.98	0.00	1.48	3.57	2.32	2.31	1.74	5.13	2.04	10.71	2.17	2.70	1.37	2.56	1.77	0.00	2.68	2.99	3.47	0.00	2.06	1.56	1.85	3.57	2.83	1.52	1.49	1.78	2.25	0.46	0.803833	0.908253
N	jcn_only_AD	HMGN3	chr6	-	chr6:79911444-79911785;chr6:79911444-79911810;chr6:79911444-79911772;chr6:79911444-79912033	chr6:79911444-79911992		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		28.57	33.96	48.78	45.45	36.67	44.32	37.19	42.31	56.06	51.05	50.00	54.32	40.62	64.00	51.72	45.98	51.30	45.99	36.61	56.25	39.82	32.65	37.93	37.50	43.12	55.00	57.81	35.14	43.45	44.53	63.16	50.00	34.69	42.19	44.44	38.14	36.90	55.62	18.73	0.055806	0.535425
N	jcn_only_AA	TESK1	chr9	+	chr9:35608507-35608842;chr9:35608507-35608858	chr9:35608507-35609103		chr9:35608843-35608858;chr9:35608859-35609103	chr9:35608858-35608859;chr9:35609103-35609104		0.00	0.00	0.00	0.00	0.00	NA	2.50	0.00	0.00	6.67	4.84	6.45	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	1.92	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.857933	0.944239
K	intron_retention	EEF1D	chr8	-	chr8:144662344-144668923				chr8:144662343-144662344;chr8:144668923-144668924		85.33	81.89	79.79	80.49	79.44	83.03	73.49	74.42	62.50	52.81	63.30	53.57	69.57	73.91	69.41	65.42	59.09	58.11	86.13	70.37	83.61	73.53	79.83	67.65	84.21	81.25	81.98	67.74	73.91	72.57	75.29	68.81	78.52	65.66	70.00	75.78	80.20	74.86	-5.35	0.665344	1.000000
N	alternative_acceptor		chr1	+	chr1:989932-990756;chr1:989932-990445	chr1:989932-990203		chr1:990204-990445;chr1:990446-990756	chr1:990445-990446;chr1:990756-990757		92.47	82.61	92.31	88.00	93.59	91.46	100.00	100.00	99.29	96.88	97.22	92.11	100.00	100.00	99.35	100.00	95.45	96.15	89.66	94.83	95.00	88.24	93.22	94.34	96.55	96.67	97.87	97.96	95.56	95.06	97.71	96.77	93.55	97.73	90.00	98.52	95.05	97.19	2.14	0.320183	0.709013
N	alternative_acceptor	SLC26A6	chr3	-	chr3:48665738-48665866;chr3:48665621-48665866	chr3:48665472-48665866		chr3:48665472-48665620;chr3:48665621-48665737	chr3:48665471-48665472;chr3:48665620-48665621		78.57	88.89	78.87	NA	85.71	NA	100.00	NA	96.30	100.00	100.00	100.00	93.33	88.24	95.00	NA	100.00	NA	90.00	79.17	90.00	NA	84.85	NA	95.00	83.33	80.00	NA	90.91	NA	84.62	77.53	100.00	90.00	71.43	87.50	94.16	83.33	-10.83	0.001629	0.302671
N	cassette	ACTR1A	chr10	-	chr10:104240930-104243916;chr10:104241933-104243916	chr10:104240930-104242767,chr10:104241933-104242767;chr10:104242861-104243916		chr10:104242768-104242860			96.39	100.00	100.00	93.75	98.25	100.00	98.18	98.55	99.11	99.12	98.53	100.00	99.15	99.32	100.00	100.00	100.00	100.00	100.00	98.77	98.36	100.00	98.73	100.00	100.00	100.00	98.89	96.36	100.00	100.00	98.31	97.65	100.00	98.92	100.00	100.00	100.00	98.66	-1.34	0.125545	0.709176
N	alternative_acceptor	GAS6	chr13	-	chr13:114542824-114549499	chr13:114545525-114549499		chr13:114542824-114545524	chr13:114542823-114542824		7.69	17.14	14.29	NA	11.76	NA	0.00	0.00	0.00	0.00	2.86	0.00	4.65	0.00	3.70	0.00	2.44	0.00	46.15	7.14	NA	12.50	9.26	11.54	23.08	3.57	16.67	7.69	8.33	8.33	0.00	7.69	8.70	3.57	3.85	4.35	12.92	1.78	-11.13	0.104925	0.598353
K	cassette	APTX	chr9	-	chr9:32974560-32985968	chr9:32974560-32984628;chr9:32984856-32985968		chr9:32984629-32984855			100.00	100.00	87.10	88.89	93.33	88.24	100.00	100.00	100.00	100.00	92.31	100.00	91.30	100.00	92.31	96.00	100.00	80.00	88.24	93.75	91.67	94.74	93.75	86.67	100.00	85.00	95.45	86.36	92.31	95.24	88.24	85.71	82.61	86.96	93.10	91.18	95.65	96.88	1.22	0.847129	0.949198
K	intron_retention		chr7	-	chr7:100174778-100174895				chr7:100174777-100174778;chr7:100174895-100174896		12.50	22.45	30.68	18.18	21.28	0.00	0.00	1.64	2.86	0.00	0.00	0.00	1.72	6.06	5.26	0.00	4.35	0.00	12.50	15.79	7.81	5.88	14.04	8.33	20.88	13.79	17.95	21.05	13.33	5.26	16.00	22.35	14.06	16.67	25.00	20.00	13.28	13.14	-0.14	0.942125	1.000000
K	intron_retention	DCXR	chr17	-	chr17:79994520-79994596				chr17:79994519-79994520;chr17:79994596-79994597		4.00	4.40	9.09	4.65	6.67	1.92	2.50	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	4.72	5.26	4.11	8.70	6.56	4.17	1.35	5.88	6.67	4.35	4.08	2.86	8.11	7.69	6.45	3.12	9.09	6.82	3.45	4.63	1.18	0.976651	1.000000
N	intron_retention		chr19	+	chr19:49469245-49469537				chr19:49469244-49469245;chr19:49469537-49469538		97.80	92.86	100.00	100.00	100.00	100.00	NA	68.75	NA	NA	100.00	NA	NA	93.33	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.47	-2.53	0.567952	1.000000
N	cassette	TBC1D1	chr4	+	chr4:38119814-38134704;chr4:38121730-38134704	chr4:38121730-38126582,chr4:38119814-38126582;chr4:38126753-38134704		chr4:38126583-38126752			100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	94.87	96.67	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	90.57	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	HSCB	chr22	+	chr22:29139912-29140602	chr22:29139967-29140602		chr22:29139912-29139966	chr22:29139911-29139912		94.59	100.00	97.56	NA	100.00	86.67	94.12	94.87	93.85	91.67	100.00	100.00	100.00	94.74	98.08	100.00	86.36	95.12	93.33	88.24	87.18	NA	83.33	84.62	100.00	93.48	88.71	NA	100.00	93.75	87.50	92.31	92.31	100.00	NA	100.00	97.06	94.03	-3.03	0.060211	0.547879
K	intron_retention	ARRDC1	chr9	+	chr9:140507459-140507911				chr9:140507458-140507459;chr9:140507911-140507912		29.63	27.27	52.63	NA	25.00	NA	0.00	3.23	4.35	NA	0.00	NA	9.38	3.33	0.00	NA	3.57	NA	NA	25.00	NA	NA	14.29	NA	53.33	14.29	17.65	NA	23.81	NA	30.00	38.46	20.00	30.00	33.33	38.46	20.00	19.64	-0.36	0.974750	1.000000
K	intron_retention		chr19	+	chr19:50016008-50016643				chr19:50016007-50016008;chr19:50016643-50016644		24.54	34.66	22.22	24.27	22.22	24.14	10.46	6.17	2.37	4.70	5.44	4.67	14.86	7.76	4.11	12.98	5.27	6.39	28.46	12.40	10.75	14.56	17.81	14.44	49.32	19.26	13.38	15.31	15.65	15.12	12.94	9.93	26.22	21.27	21.37	22.73	27.34	12.67	-14.67	0.408030	1.000000
K	intron_retention		chr15	+	chr15:77323620-77324638				chr15:77323619-77323620;chr15:77324638-77324639		23.08	17.57	24.53	9.09	7.55	0.00	3.17	NA	0.00	0.00	8.70	NA	3.23	NA	5.00	NA	5.41	NA	9.59	20.00	18.39	9.09	18.75	0.00	21.67	23.08	24.39	NA	25.53	NA	6.25	18.60	9.15	16.00	20.59	11.76	9.37	21.54	12.17	0.454557	1.000000
K	cassette	MRPL52	chr14	+	chr14:23299464-23303380;chr14:23300247-23303380	chr14:23300247-23302626,chr14:23299464-23302626;chr14:23302692-23303380		chr14:23302627-23302691			93.27	95.36	94.97	94.42	95.49	96.21	96.63	90.91	96.67	94.38	95.00	94.92	93.97	92.65	94.32	95.14	94.87	95.24	95.48	91.07	93.19	94.06	95.18	95.65	97.39	93.55	91.33	96.59	92.44	96.43	93.68	95.00	92.72	95.88	92.86	94.38	95.42	92.96	-2.46	0.011061	0.314700
N	alternative_acceptor	SIVA1	chr14	+	chr14:105223098-105225555;chr14:105223098-105225764	chr14:105223098-105225770		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	1.35	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	alternative_acceptor	HMG20B	chr19	+	chr19:3573799-3574338;chr19:3573799-3573900;chr19:3573799-3574367	chr19:3573799-3574380		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		71.43	85.71	74.29	70.59	72.41	NA	90.54	80.95	90.48	87.93	86.15	91.30	92.86	87.50	77.27	90.91	85.29	86.67	84.21	79.17	80.36	76.19	73.21	77.78	80.56	77.27	63.64	80.77	79.17	90.91	78.26	73.58	80.95	50.00	72.41	67.57	84.96	78.72	-6.24	0.046855	0.570243
K	intron_retention	BET1L	chr11	-	chr11:205470-205610				chr11:205469-205470;chr11:205610-205611		14.29	15.38	20.00	0.00	6.67	0.00	2.78	0.00	4.65	0.00	11.11	0.00	4.65	0.00	6.98	4.17	3.70	NA	0.00	17.65	0.00	7.69	22.22	12.50	0.00	5.00	4.00	6.67	0.00	0.00	9.09	14.81	NA	7.14	11.54	13.79	2.78	7.04	4.27	0.898195	1.000000
N	cassette	TPMT	chr6	-	chr6:18132409-18139193	chr6:18132409-18134034;chr6:18134121-18139193		chr6:18134035-18134120			94.34	100.00	95.74	NA	100.00	NA	98.86	100.00	100.00	94.12	100.00	100.00	97.26	97.87	100.00	100.00	100.00	100.00	100.00	94.34	88.89	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.77	99.43	98.94	-0.50	0.360190	0.709176
K	intron_retention		chr2	-	chr2:74732766-74732863				chr2:74732765-74732766;chr2:74732863-74732864		31.58	13.79	20.00	0.00	6.98	4.00	6.67	NA	0.00	NA	8.33	NA	6.67	NA	8.33	10.00	8.33	NA	10.42	21.05	6.25	23.08	16.22	NA	3.23	27.27	10.71	NA	15.00	8.33	26.32	25.00	11.86	12.50	27.78	36.36	8.54	26.80	18.25	0.009643	1.000000
K	intron_retention	DOK1	chr2	+	chr2:74783206-74783434				chr2:74783205-74783206;chr2:74783434-74783435		6.90	10.77	8.16	NA	11.11	NA	1.82	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.35	0.00	0.00	NA	10.00	4.55	3.23	NA	7.27	NA	5.56	3.23	10.20	0.00	7.69	NA	9.52	14.63	11.54	0.00	4.35	7.14	7.78	3.89	-3.89	0.932068	1.000000
K	intron_retention	PIN1	chr19	+	chr19:9959988-9960208				chr19:9959987-9959988;chr19:9960208-9960209		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	95.69	95.00	96.30	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	97.14	100.00	100.00	98.97	100.00	100.00	100.00	99.48	100.00	0.52	0.854433	1.000000
N	alternative_acceptor	HNRNPH1	chr5	-	chr5:179041961-179042546;chr5:179042190-179042546	chr5:179041779-179042546		chr5:179041779-179041960;chr5:179041961-179042189	chr5:179041778-179041779;chr5:179041960-179041961		1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.36	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	1.33	1.20	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.483465	0.782166
K	cassette	CHD3	chr17	+	chr17:7812657-7814164	chr17:7812657-7813745;chr17:7813910-7814164		chr17:7813746-7813909			96.67	100.00	95.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	93.94	NA	100.00	100.00	97.50	100.00	95.74	100.00	100.00	92.86	100.00	93.75	97.01	100.00	96.30	100.00	86.67	98.25	93.33	100.00	95.65	100.00	98.75	98.34	-0.41	0.541192	0.813117
K	intron_retention	COMMD3,COMMD3-BMI1	chr10	+	chr10:22607792-22607887				chr10:22607791-22607792;chr10:22607887-22607888		4.35	0.00	6.82	0.00	2.86	0.00	0.00	0.00	0.00	0.00	1.16	0.00	1.75	0.00	0.00	0.00	0.00	0.00	1.98	6.06	1.19	0.00	5.61	13.33	0.00	7.69	8.18	0.00	4.26	0.00	8.70	8.97	3.06	6.67	6.85	9.09	0.88	5.21	4.33	0.422627	1.000000
N	alternative_donor	KMO	chr1	+	chr1:241753566-241755254	chr1:241755129-241755254		chr1:241753566-241755128	chr1:241753565-241753566		2.86	2.63	8.89	1.31	0.82	0.18	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	4.76	0.58	1.61	0.39	0.00	4.00	2.63	3.53	4.27	2.76	0.00	4.05	6.25	3.10	2.78	0.68	2.17	1.89	0.00	4.78	4.74	2.60	0.00	2.51	2.51	0.079044	0.470724
N	alternative_donor	ZNF598	chr16	-	chr16:28855423-28855634;chr16:28855423-28855595	chr16:28855423-28855550		chr16:28855551-28855595;chr16:28855596-28855634	chr16:28855595-28855596;chr16:28855634-28855635		91.67	80.49	86.84	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	94.12	88.00	100.00	100.00	81.63	NA	87.88	100.00	100.00	100.00	65.22	73.53	80.65	100.00	100.00	100.00	90.81	91.67	0.86	0.842430	0.955392
K	jcn_only_AA	REC8	chr14	+	chr14:24649113-24649232	chr14:24649113-24649215		chr14:24649216-24649232	chr14:24649232-24649233		97.96	100.00	97.87	90.91	100.00	97.18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	96.97	98.21	100.00	93.33	100.00	100.00	96.67	100.00	NA	NA	100.00	98.28	100.00	96.67	100.00	100.00	100.00	100.00	97.47	-2.53	0.134056	0.663989
N	jcn_only_AD	POLR1D	chr13	+	chr13:28225490-28239822;chr13:28222591-28239822	chr13:28222587-28239822		chr13:28222587-28222590;chr13:28222591-28225489	chr13:28222586-28222587;chr13:28222590-28222591		4.76	0.00	3.03	3.70	2.63	8.33	0.00	5.88	6.06	0.00	0.00	0.00	0.00	10.00	0.00	2.63	0.00	0.00	2.94	4.00	0.00	2.94	4.00	6.90	8.70	5.00	3.03	4.76	0.00	6.67	0.00	2.63	8.33	2.78	2.22	2.27	1.47	4.88	3.41	0.472457	0.721034
N	jcn_only_AA	WDR91	chr7	-	chr7:134878152-134878329;chr7:134878096-134878329;chr7:134878099-134878329	chr7:134878230-134878329		chr7:134878096-134878098;chr7:134878099-134878151;chr7:134878152-134878229	chr7:134878095-134878096;chr7:134878098-134878099;chr7:134878151-134878152		5.26	0.00	0.00	NA	4.00	NA	5.00	NA	8.33	16.67	0.00	NA	0.00	NA	9.09	0.00	3.12	NA	0.00	18.18	NA	0.00	10.20	7.14	0.00	0.00	11.11	NA	12.50	NA	0.00	6.45	0.00	7.89	5.08	5.00	0.00	2.63	2.63	0.328057	0.663989
N	alternative_donor	QSOX1	chr1	+	chr1:180166026-180166467;chr1:180166012-180166467;chr1:180165930-180166467	chr1:180165735-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		26.17	27.03	26.65	44.44	32.62	48.65	18.90	25.24	30.72	28.89	27.07	25.00	22.60	30.15	29.30	23.08	29.73	34.12	38.74	26.76	43.15	26.87	25.71	25.71	30.00	30.30	28.82	24.53	39.47	38.67	29.37	27.15	37.14	23.90	20.00	21.43	28.52	28.07	-0.45	0.759464	0.902356
N	alternative_last_exon		chr17	+	chr17:7474252-7474717;chr17:7474252-7475601	chr17:7474252-7474690	chr17:7475602-7476182	chr17:7474691-7475287			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	94.44	100.00	95.83	94.74	100.00	100.00	91.67	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.185139	0.410722
K	intron_retention		chr11	-	chr11:126135977-126136081				chr11:126135976-126135977;chr11:126136081-126136082		0.00	0.00	5.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.63	NA	2.86	3.77	0.00	0.00	0.00	1.69	0.00	3.23	0.00	11.76	8.93	NA	3.92	1.47	2.47	0.00	0.00	0.00	0.594508	1.000000
K	coord_cassette	NQO1	chr16	-	chr16:69745185-69752025	chr16:69745185-69746930;chr16:69747033-69748866;chr16:69748981-69752025		chr16:69746931-69747032;chr16:69748867-69748980			100.00	97.59	100.00	96.15	99.17	92.59	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	96.67	97.50	94.83	95.65	100.00	97.06	100.00	97.88	97.87	100.00	100.00	100.00	99.27	97.92	100.00	95.83	93.33	97.33	98.33	99.05	97.65	97.46	100.00	2.54	0.184811	0.643829
N	cassette	DCAF12	chr9	-	chr9:34088507-34093283	chr9:34088507-34089409;chr9:34089589-34093283		chr9:34089410-34089588			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	NA	94.12	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	alternative_acceptor	YIPF2	chr19	-	chr19:11033851-11033947	chr19:11033868-11033947		chr19:11033851-11033867	chr19:11033850-11033851		12.00	23.53	25.00	NA	13.64	15.38	4.35	4.76	11.76	3.70	5.45	3.45	4.88	7.14	4.00	4.00	2.08	4.76	18.18	27.27	16.67	NA	13.04	9.09	35.71	18.18	18.18	18.18	13.64	6.25	10.00	25.00	13.33	36.36	11.76	22.73	15.75	11.00	-4.75	0.576641	0.839239
N	cassette	DCTN1	chr2	-	chr2:74604594-74605126	chr2:74604594-74604774;chr2:74604854-74605126		chr2:74604775-74604853			100.00	100.00	97.67	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	cassette	ATP1B3	chr3	+	chr3:141632679-141640818	chr3:141632679-141634811;chr3:141634863-141640818		chr3:141634812-141634862			98.70	96.08	97.80	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.43	97.75	100.00	100.00	100.00	100.00	97.44	96.84	100.00	100.00	100.00	95.00	95.07	100.00	98.20	100.00	100.00	100.00	98.56	-1.44	0.306898	0.709176
K	intron_retention	EIF2B1	chr12	-	chr12:124106468-124107182				chr12:124106467-124106468;chr12:124107182-124107183		9.09	0.00	13.51	NA	6.90	NA	0.00	5.26	0.00	0.00	2.70	NA	1.96	0.00	3.70	0.00	0.00	NA	0.00	6.25	5.56	NA	11.11	10.00	NA	0.00	9.38	0.00	5.26	0.00	16.67	0.00	0.00	6.67	8.11	12.50	0.00	5.75	5.75	0.413779	1.000000
N	jcn_only_AA	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407084-4407386;chr11:4407141-4407386;chr11:4407110-4407386	chr11:4406413-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		0.00	0.00	0.00	0.00	3.45	12.50	0.00	1.37	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	0.00	0.00	NA	2.22	0.00	0.00	0.00	0.00	NA	1.61	0.00	1.04	0.00	1.42	0.00	0.00	0.00	0.00	0.00	1.22	0.00	1.27	1.27	0.033696	0.663989
K	intron_retention	AKAP8L	chr19	-	chr19:15508667-15510112				chr19:15508666-15508667;chr19:15510112-15510113		7.14	0.00	7.14	21.05	7.35	20.93	4.00	4.35	3.03	5.56	6.90	NA	10.00	3.23	6.82	8.00	8.33	NA	7.69	7.69	6.85	19.23	8.47	36.67	5.88	11.36	12.50	26.47	10.87	23.73	8.70	6.82	5.63	20.00	11.63	32.86	5.75	7.42	1.66	0.766299	1.000000
N	jcn_only_AA	SIRT2	chr19	-	chr19:39380596-39380742	chr19:39380602-39380742		chr19:39380596-39380601	chr19:39380595-39380596		100.00	100.00	97.30	NA	100.00	NA	100.00	100.00	100.00	100.00	97.92	98.33	97.20	94.44	100.00	100.00	98.92	100.00	NA	100.00	NA	96.77	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.743605	0.885252
K	cassette	BAZ1A	chr14	-	chr14:35255208-35261980	chr14:35255208-35255331;chr14:35255428-35261980		chr14:35255332-35255427			72.00	100.00	80.77	100.00	NA	92.45	80.00	78.18	91.89	91.53	76.00	94.49	76.19	88.33	86.15	88.31	66.67	96.49	NA	78.26	71.43	100.00	92.86	90.48	100.00	81.25	85.71	83.33	75.00	93.33	81.82	68.75	72.73	93.33	90.48	94.52	80.00	79.75	-0.25	0.398634	0.715166
N	coord_cassette	SLC27A3	chr1	+	chr1:153751030-153751818	chr1:153751030-153751233;chr1:153751362-153751589;chr1:153751688-153751818		chr1:153751234-153751361;chr1:153751590-153751687			100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	NA	93.33	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	100.00	0.00	0.373901	0.643829
N	alternative_acceptor		chr1	+	chr1:36766686-36767156	chr1:36766686-36767153		chr1:36767154-36767156	chr1:36767156-36767157		100.00	64.29	87.50	NA	NA	NA	83.33	81.82	84.85	79.25	87.50	80.56	80.00	91.30	81.58	79.59	75.00	76.74	NA	72.73	70.00	91.30	100.00	84.38	60.00	100.00	93.33	94.12	71.43	86.96	86.21	87.88	NA	84.62	87.18	85.71	72.15	88.75	16.61	0.057499	0.570243
K	cassette	PRMT1	chr19	+	chr19:50179697-50183743;chr19:50180574-50183743	chr19:50180574-50183128,chr19:50179697-50183128;chr19:50183183-50183743		chr19:50183129-50183182			18.75	0.00	16.67	NA	33.33	NA	14.71	0.00	10.53	14.63	12.12	8.70	22.50	9.09	14.47	15.79	13.89	5.26	21.43	10.00	6.67	16.13	10.53	21.05	NA	18.18	11.76	18.18	23.81	15.38	16.67	16.67	NA	25.00	22.58	22.22	18.07	13.34	-4.73	0.687543	0.885445
K	intron_retention	ACD	chr16	-	chr16:67691588-67691664				chr16:67691587-67691588;chr16:67691664-67691665		4.55	13.27	9.09	9.52	6.45	8.51	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	7.06	0.00	13.89	NA	12.50	NA	6.67	6.25	4.17	NA	0.00	10.00	23.81	20.00	8.11	7.69	5.00	0.00	7.58	5.40	-2.18	0.981573	1.000000
N	alternative_last_exon		chrX	+	chrX:70361815-70367399	chrX:70361815-70362024	chrX:70367400-70368056	chrX:70362025-70362304			96.30	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	91.67	100.00	NA	100.00	NA	100.00	93.75	100.00	100.00	100.00	NA	100.00	100.00	94.12	100.00	100.00	100.00	100.00	97.37	100.00	100.00	96.00	100.00	100.00	98.15	-1.85	0.095994	0.315390
N	cassette	AP5Z1	chr7	+	chr7:4820944-4822946	chr7:4820944-4821198;chr7:4821386-4822946		chr7:4821199-4821385			92.59	100.00	94.29	NA	100.00	NA	100.00	97.50	93.55	97.78	100.00	92.31	97.62	100.00	95.74	96.83	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	94.74	89.66	100.00	86.96	100.00	100.00	94.29	NA	100.00	100.00	95.12	100.00	98.75	-1.25	0.218628	0.709176
N	alternative_donor	STAB1	chr3	+	chr3:52532269-52535181;chr3:52530662-52535181	chr3:52529508-52535181		chr3:52529508-52530661;chr3:52530662-52532268	chr3:52529507-52529508;chr3:52530661-52530662		97.56	95.96	98.46	NA	90.00	100.00	100.00	100.00	100.00	100.00	99.81	100.00	99.73	100.00	100.00	100.00	99.66	100.00	90.91	100.00	NA	100.00	97.18	100.00	96.98	100.00	96.43	100.00	96.21	100.00	NA	100.00	93.18	100.00	97.47	100.00	96.47	100.00	3.53	0.070676	0.453728
N	cassette	EWSR1	chr22	+	chr22:29683124-29687553;chr22:29683124-29688125	chr22:29683124-29684594;chr22:29684776-29688125,chr22:29684776-29687553		chr22:29684595-29684775			91.96	100.00	96.75	100.00	98.04	100.00	100.00	98.10	97.50	99.18	97.84	100.00	100.00	96.94	96.00	98.68	98.74	97.30	94.44	97.03	92.86	100.00	98.88	96.97	100.00	97.06	100.00	100.00	100.00	97.94	89.55	89.58	87.50	96.88	100.00	96.45	100.00	96.98	-3.02	0.477632	0.771093
K	jcn_only_AA	YTHDC1	chr4	-	chr4:69184448-69184543	chr4:69184472-69184543		chr4:69184448-69184471	chr4:69184447-69184448		62.22	70.00	57.38	NA	71.43	NA	13.64	38.10	28.26	38.71	30.30	28.57	14.29	40.91	32.61	31.58	27.78	28.00	NA	67.44	62.50	58.33	62.22	57.63	NA	64.44	63.79	51.43	55.56	47.73	76.47	67.09	60.00	66.67	75.68	62.67	37.14	63.33	26.19	0.308035	0.663989
N	alternative_donor	ANKRD13D	chr11	+	chr11:67067595-67068460;chr11:67068367-67068460	chr11:67067971-67068460		chr11:67067595-67067970;chr11:67067971-67068366	chr11:67067594-67067595;chr11:67067970-67067971		6.86	5.50	8.00	7.14	5.60	NA	6.25	0.00	0.00	NA	6.06	NA	2.08	0.00	0.00	NA	2.50	NA	5.34	4.62	6.67	0.00	3.26	6.67	0.81	3.57	5.41	10.00	6.15	NA	5.26	7.83	3.67	3.23	4.94	6.06	4.50	4.09	-0.41	0.709767	0.877392
K	intron_retention		chr20	-	chr20:3673779-3674093				chr20:3673778-3673779;chr20:3674093-3674094		17.83	27.78	9.38	NA	NA	NA	1.76	2.13	0.50	0.00	1.10	0.97	3.05	2.80	3.96	9.43	2.04	4.11	NA	17.17	0.00	0.00	2.22	19.74	33.33	9.68	8.82	21.57	5.66	9.88	14.29	10.00	NA	29.17	5.88	17.27	15.42	11.98	-3.43	0.900778	1.000000
K	intron_retention	INPPL1	chr11	+	chr11:71948841-71949085				chr11:71948840-71948841;chr11:71949085-71949086		7.79	9.20	13.25	NA	11.11	NA	0.00	0.00	0.00	0.00	0.00	NA	1.67	2.86	0.00	5.88	0.00	NA	8.70	11.63	10.00	14.29	11.39	0.00	9.09	5.66	8.82	0.00	1.96	NA	17.65	19.48	10.87	10.00	15.91	10.00	8.89	6.72	-2.17	0.961760	1.000000
N	cassette	H2AFY	chr5	-	chr5:134686604-134696186;chr5:134681748-134696186	chr5:134681748-134688635,chr5:134686604-134688635;chr5:134688736-134696186		chr5:134688636-134688735			42.62	20.32	23.60	42.50	24.34	21.43	42.75	67.11	56.41	64.56	59.28	61.60	34.82	72.22	45.45	54.48	65.13	71.12	20.59	46.73	44.87	29.38	28.54	30.54	11.76	41.67	26.83	45.24	31.27	33.33	42.31	23.00	17.46	30.13	32.06	25.28	20.45	44.67	24.22	0.004153	0.236885
N	alternative_first_exon	SELPLG	chr12	-	chr12:109018089-109024415,chr12:109018089-109024420;chr12:109018089-109041176;chr12:109018089-109025634	chr12:109018089-109027515	chr12:109041177-109041298;chr12:109025635-109025854	chr12:109027516-109027735			70.00	89.74	77.61	NA	NA	NA	88.81	81.82	88.79	60.98	91.49	76.92	98.12	45.83	97.37	93.55	83.48	72.22	NA	44.00	81.25	45.45	88.89	45.45	97.92	76.92	76.79	NA	77.78	NA	38.46	73.17	NA	50.00	61.76	76.19	93.83	57.91	-35.91	0.005586	0.037949
K	intron_retention		chr15	+	chr15:41106269-41106345				chr15:41106268-41106269;chr15:41106345-41106346		3.70	10.91	17.14	14.29	20.91	16.67	10.53	NA	0.00	NA	0.00	NA	7.14	NA	5.26	NA	5.00	NA	15.00	16.67	13.95	NA	23.40	NA	15.60	13.64	21.43	30.00	22.86	NA	11.11	21.21	16.00	20.00	13.79	0.00	12.96	12.38	-0.58	0.951740	1.000000
K	alternative_acceptor	CTBP1	chr4	-	chr4:1206212-1206700	chr4:1206215-1206700		chr4:1206212-1206214	chr4:1206211-1206212		27.27	24.24	20.00	20.00	19.05	NA	15.56	17.65	19.23	14.29	21.95	NA	16.67	20.00	31.03	22.58	22.92	NA	29.63	22.22	21.43	16.00	17.86	16.67	8.70	22.22	28.12	18.18	17.91	21.43	23.53	24.14	22.22	20.00	30.23	30.00	19.45	22.22	2.77	0.448956	0.755217
K	intron_retention	CIRBP	chr19	+	chr19:1273025-1274349				chr19:1273024-1273025;chr19:1274349-1274350		96.88	88.98	94.26	91.27	91.61	90.48	100.00	98.08	93.83	100.00	98.11	100.00	98.28	100.00	100.00	100.00	95.65	100.00	91.58	92.68	92.70	93.15	92.05	97.14	82.97	95.19	91.73	95.12	93.97	94.55	93.96	90.74	89.85	95.24	93.48	96.12	90.72	96.03	5.32	0.668152	1.000000
N	cassette	RNPEPL1	chr2	+	chr2:241513309-241513931;chr2:241512679-241513931	chr2:241513309-241513529,chr2:241512679-241513529;chr2:241513766-241513931		chr2:241513530-241513765			100.00	100.00	100.00	NA	93.33	NA	99.07	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.12	100.00	100.00	93.85	100.00	100.00	100.00	100.00	100.00	95.92	100.00	82.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.255740	0.709176
K	intron_retention	RPL8	chr8	-	chr8:146016693-146016755				chr8:146016692-146016693;chr8:146016755-146016756		88.65	86.40	86.33	87.58	88.25	89.27	86.05	85.19	86.33	82.28	84.16	85.51	87.75	80.70	86.12	86.42	83.24	81.26	93.97	93.72	93.36	86.51	87.77	87.14	85.13	91.95	86.22	88.16	85.54	87.69	94.09	94.12	92.63	87.48	87.62	86.23	87.08	90.30	3.23	0.984066	1.000000
K	intron_retention		chr3	-	chr3:52436888-52437153				chr3:52436887-52436888;chr3:52437153-52437154		15.38	6.45	12.77	NA	7.69	NA	2.27	0.00	2.86	8.11	2.17	7.14	4.17	3.12	2.08	7.89	4.00	5.00	16.67	10.34	10.53	15.38	9.68	12.00	NA	10.00	12.82	11.11	4.55	4.00	24.00	13.21	NA	13.89	16.13	16.67	5.31	10.17	4.86	0.870936	1.000000
N	alternative_acceptor	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668567;chr17:79668162-79668244;chr17:79668162-79668537	chr17:79668162-79668273		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		7.84	2.90	7.69	10.00	5.41	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	2.38	5.88	3.75	5.17	4.29	7.55	3.12	9.30	3.45	7.84	6.78	5.88	8.33	4.46	4.69	6.25	5.45	7.78	2.64	6.86	4.22	0.149133	0.651394
K	cassette	PPP4C	chr16	+	chr16:30087797-30093804	chr16:30087797-30092579;chr16:30092632-30093804		chr16:30092580-30092631			80.72	89.32	78.35	95.00	93.68	86.21	98.08	93.02	93.67	96.94	95.35	95.89	95.08	93.41	91.86	93.79	98.28	98.28	93.48	92.59	95.89	95.24	90.91	97.22	86.96	88.51	88.68	93.94	95.61	95.08	83.91	83.90	88.24	93.55	93.10	88.89	91.40	90.55	-0.85	0.288061	0.709176
K	intron_retention	AC113189.5	chr17	-	chr17:7485482-7487235				chr17:7485481-7485482;chr17:7487235-7487236		90.91	100.00	95.24	90.00	94.74	100.00	100.00	87.50	78.57	86.96	90.00	100.00	90.00	81.25	NA	92.31	87.50	100.00	100.00	89.47	100.00	88.89	100.00	100.00	81.25	100.00	100.00	100.00	92.11	100.00	96.67	100.00	96.67	100.00	89.29	88.89	98.34	90.19	-8.15	0.730745	1.000000
K	intron_retention		chr1	-	chr1:43830132-43830212				chr1:43830131-43830132;chr1:43830212-43830213		3.85	5.61	6.06	4.55	7.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.46	2.02	0.00	0.00	3.23	3.66	6.90	4.55	6.38	0.00	2.78	6.31	3.23	2.42	5.26	7.94	5.80	0.00	3.96	5.51	4.94	0.00	3.00	3.00	0.968695	1.000000
N	alternative_donor	ATP6V0B	chr1	+	chr1:44440776-44441471;chr1:44440780-44441471;chr1:44440970-44441471;chr1:44440980-44441471	chr1:44441260-44441471		chr1:44440776-44440779;chr1:44440780-44440969;chr1:44440970-44440979;chr1:44440980-44441259	chr1:44440775-44440776;chr1:44440779-44440780;chr1:44440969-44440970;chr1:44440979-44440980		4.20	1.14	5.07	0.00	1.01	0.00	0.36	0.54	0.00	0.38	0.36	0.00	0.66	0.61	0.62	0.38	0.37	0.00	0.00	4.00	0.85	3.80	3.51	4.00	4.35	1.69	2.92	0.88	1.72	0.00	4.95	6.54	2.00	2.86	2.42	2.11	0.90	2.84	1.94	0.254624	0.624867
K	jcn_only_AD	SF1	chr11	-	chr11:64532991-64534371	chr11:64532991-64533422					5.13	0.00	0.00	0.00	0.00	NA	0.00	4.44	3.80	4.55	4.30	0.00	5.00	4.65	2.53	4.94	2.60	10.00	NA	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	2.27	3.92	0.00	0.00	0.00	NA	0.00	4.35	0.00	0.00	2.22	2.22	0.517634	0.754861
N	cassette	NUDT5	chr10	-	chr10:12214866-12219791	chr10:12214866-12215716;chr10:12215813-12219791		chr10:12215717-12215812			100.00	100.00	95.83	100.00	98.72	100.00	100.00	NA	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.52	100.00	100.00	100.00	96.00	93.33	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr7	+	chr7:100468086-100468195				chr7:100468085-100468086;chr7:100468195-100468196		2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	4.35	2.33	0.00	0.00	1.59	0.00	0.00	2.22	0.00	2.13	0.00	0.00	3.03	0.00	6.67	0.00	1.86	1.86	0.430532	1.000000
K	intron_retention	SARS	chr1	+	chr1:109779171-109779865				chr1:109779170-109779171;chr1:109779865-109779866		3.92	4.79	2.33	1.35	2.52	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	1.53	2.78	1.75	6.12	3.48	2.13	2.19	3.70	2.44	0.00	1.11	2.04	4.00	5.26	3.26	3.03	2.27	1.61	1.86	3.24	1.38	0.910556	1.000000
N	alternative_acceptor		chr20	+	chr20:1915401-1916840;chr20:1915401-1917248;chr20:1915401-1917990	chr20:1915401-1917965		chr20:1916841-1917248;chr20:1917249-1917965;chr20:1917966-1917990	chr20:1917248-1917249;chr20:1917965-1917966;chr20:1917990-1917991		95.62	95.83	94.88	100.00	100.00	100.00	98.79	98.90	99.33	99.39	99.10	99.35	98.72	98.90	98.34	99.27	99.43	99.62	100.00	96.13	98.11	95.97	94.33	97.28	NA	96.33	96.09	96.75	96.92	96.43	96.94	96.96	100.00	92.09	93.22	96.18	98.79	96.63	-2.16	0.149876	0.653349
N	alternative_acceptor	NPPA-AS1	chr1	+	chr1:36645669-36645851;chr1:36645669-36661271	chr1:36645669-36645848		chr1:36645849-36645851;chr1:36645852-36661271	chr1:36645851-36645852;chr1:36661271-36661272		94.44	100.00	90.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	91.30	NA	100.00	100.00	85.71	NA	100.00	100.00	88.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.208791	0.670323
N	cassette	EPN1	chr19	+	chr19:56204404-56206513	chr19:56204404-56206091;chr19:56206350-56206513		chr19:56206092-56206349			97.33	97.83	96.30	100.00	94.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	98.63	100.00	100.00	100.00	100.00	100.00	0.00	0.817214	0.940103
K	intron_retention		chr11	-	chr11:1501717-1501954				chr11:1501716-1501717;chr11:1501954-1501955		6.45	10.00	9.09	8.70	9.68	4.55	0.00	0.00	0.00	3.33	NA	0.00	7.41	0.00	4.55	0.00	8.33	5.26	4.76	9.09	5.00	6.45	9.09	6.52	0.00	2.94	7.14	9.52	11.54	5.13	3.33	7.69	9.09	4.65	9.38	6.25	6.08	3.13	-2.95	0.786872	1.000000
K	intron_retention	RGS2	chr1	+	chr1:192778312-192779295				chr1:192778311-192778312;chr1:192779295-192779296		7.35	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.46	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.83	NA	5.56	0.00	2.27	0.00	1.73	NA	NA	1.79	0.00	0.00	0.00	4.88	2.70	0.00	0.00	0.00	1.39	0.00	5.22	5.22	0.288208	1.000000
K	jcn_only_AD	LSM1	chr8	-	chr8:38029552-38034070	chr8:38029552-38033792		chr8:38033793-38034070	chr8:38034070-38034071		100.00	100.00	98.36	95.00	97.22	100.00	94.83	97.14	100.00	97.22	95.16	97.73	96.00	96.55	100.00	94.83	96.05	97.37	100.00	100.00	100.00	100.00	100.00	92.86	NA	100.00	97.92	100.00	97.37	95.56	100.00	98.21	95.83	100.00	94.83	100.00	96.00	100.00	4.00	0.253285	0.657607
K	jcn_only_AA	GRK6	chr5	+	chr5:176868055-176868737	chr5:176868055-176868735		chr5:176868736-176868737	chr5:176868737-176868738		35.14	29.63	15.71	29.41	17.95	NA	50.00	33.33	30.77	56.00	45.00	NA	52.00	35.71	18.18	47.83	39.29	NA	24.00	40.91	32.43	NA	37.04	NA	39.39	47.83	29.11	47.37	26.92	NA	18.18	20.69	32.35	40.91	27.78	NA	35.87	35.42	-0.45	0.667555	0.852817
N	intron_retention	LGMN	chr14	-	chr14:93170707-93172827				chr14:93170706-93170707;chr14:93172827-93172828		NA	47.06	NA	9.09	47.27	0.00	10.00	NA	NA	NA	12.50	NA	6.98	8.70	5.00	0.00	6.67	0.00	15.79	26.32	20.00	4.00	34.48	2.63	51.22	27.78	30.00	NA	60.98	NA	38.89	NA	24.00	NA	28.57	8.70	19.89	27.05	7.16	0.343783	1.000000
K	alternative_acceptor	PPP6R2	chr22	+	chr22:50882547-50882631	chr22:50882547-50882627		chr22:50882628-50882631	chr22:50882631-50882632		100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.67	91.67	NA	NA	NA	100.00	100.00	94.12	NA	NA	NA	100.00	100.00	97.92	100.00	100.00	NA	93.83	100.00	100.00	100.00	100.00	95.24	96.15	93.55	96.10	100.00	100.00	100.00	100.00	100.00	0.00	0.642288	0.866318
K	jcn_only_AD	RPS9	chr19	+	chr19:54710593-54711265;chr19:54705478-54711265	chr19:54710331-54711265					88.73	92.40	91.25	90.57	93.71	89.63	96.01	89.67	87.73	93.99	96.45	96.07	96.49	90.85	90.03	94.07	95.82	95.32	92.26	90.19	88.33	90.31	94.82	90.92	90.48	89.25	87.60	90.77	94.26	90.65	83.22	86.34	89.22	93.85	93.80	91.28	92.33	89.46	-2.87	0.029640	0.394746
K	intron_retention		chr3	+	chr3:49051727-49051815				chr3:49051726-49051727;chr3:49051815-49051816		17.39	0.00	5.36	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.86	0.00	0.00	NA	10.00	12.50	4.76	6.67	4.76	NA	0.00	0.00	4.76	4.76	0.00	NA	17.65	11.11	18.18	8.57	5.00	8.70	0.00	6.25	6.25	0.152478	1.000000
K	intron_retention	PDPN	chr1	+	chr1:13940901-13942399				chr1:13940900-13940901;chr1:13942399-13942400		0.00	0.00	2.52	0.00	0.00	3.57	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.36	0.00	0.00	0.00	0.00	1.05	0.00	0.00	2.38	8.00	0.00	3.17	1.56	2.78	3.57	6.76	0.00	0.91	0.00	0.00	6.25	5.88	0.00	0.00	0.00	0.475321	1.000000
K	intron_retention	MYL5	chr4	+	chr4:673808-674297				chr4:673807-673808;chr4:674297-674298		3.45	1.79	3.85	0.00	0.00	0.00	0.00	NA	0.00	NA	10.00	NA	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	10.34	0.00	0.00	9.52	4.44	NA	6.25	0.00	0.00	0.00	0.00	8.70	16.67	5.41	0.00	1.73	1.73	0.701246	1.000000
K	alternative_acceptor	NUDT14	chr14	-	chr14:105639599-105642870	chr14:105642325-105642870		chr14:105639599-105642324	chr14:105639598-105639599		10.00	3.57	NA	2.86	3.95	1.59	3.33	7.69	5.56	8.70	10.26	6.25	3.17	4.35	4.17	4.76	9.30	0.00	3.61	18.18	5.71	13.33	15.15	10.00	5.00	25.00	NA	17.39	16.67	6.45	NA	10.00	3.45	17.39	17.86	10.53	3.51	10.00	6.49	0.067468	0.584083
K	intron_retention	SH3BP5-AS1	chr3	+	chr3:15302090-15305802				chr3:15302089-15302090;chr3:15305802-15305803		15.79	0.00	4.44	0.00	1.85	5.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2.11	0.00	5.88	25.00	9.68	21.43	1.53	6.25	4.44	NA	5.56	NA	6.25	2.86	2.63	25.00	16.67	14.29	1.82	6.25	4.43	0.901044	1.000000
K	intron_retention	PPM1M	chr3	+	chr3:52281245-52281697				chr3:52281244-52281245;chr3:52281697-52281698		14.29	11.76	20.83	NA	18.18	NA	0.00	0.00	0.00	0.00	4.48	0.00	1.45	0.00	6.25	0.00	1.96	NA	NA	15.38	0.00	NA	20.83	NA	0.00	NA	12.00	NA	7.69	NA	NA	23.08	NA	NA	12.50	NA	0.72	7.14	6.42	0.767428	1.000000
K	alternative_acceptor	BABAM1	chr19	+	chr19:17378337-17379564;chr19:17378337-17379610	chr19:17378337-17379602		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		78.95	82.61	85.19	NA	72.73	NA	77.27	76.19	69.23	83.33	76.92	80.95	79.59	77.78	82.61	80.00	78.26	85.71	NA	76.92	73.33	NA	63.64	NA	NA	70.00	79.17	81.82	78.26	63.64	90.00	79.17	90.00	84.62	80.00	93.33	81.10	77.35	-3.75	0.324061	0.709013
N	jcn_only_AA	CDC34	chr19	+	chr19:537148-541345;chr19:537148-541338;chr19:537148-541342	chr19:537148-538677		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		1.67	0.00	4.48	6.00	6.10	3.23	3.57	6.06	0.00	0.00	0.00	4.55	3.77	2.94	3.57	0.00	0.00	0.00	4.76	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	3.39	1.78	2.26	0.48	0.858667	0.944239
N	alternative_donor	VPS28	chr8	-	chr8:145650384-145651065;chr8:145650384-145650492	chr8:145650384-145651043		chr8:145650493-145651043;chr8:145651044-145651065	chr8:145651043-145651044;chr8:145651065-145651066		4.55	7.84	9.68	7.69	6.25	0.00	4.55	NA	7.14	0.00	6.25	NA	3.85	NA	NA	7.14	8.33	NA	2.78	6.67	7.69	16.67	6.90	18.18	0.00	20.00	11.11	6.67	2.78	4.55	6.25	10.00	5.71	14.29	5.56	6.25	4.20	6.46	2.26	0.241101	0.610791
K	intron_retention	RAB18	chr10	+	chr10:27822783-27822856				chr10:27822782-27822783;chr10:27822856-27822857		5.56	0.00	3.64	3.23	0.00	NA	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	3.57	3.61	1.56	7.69	0.00	4.84	10.42	0.00	1.92	2.22	14.71	11.11	0.00	3.79	4.82	2.63	0.00	5.20	5.20	0.111053	1.000000
N	alternative_acceptor	GPR84	chr12	-	chr12:54757024-54758176;chr12:54757058-54758176;chr12:54757061-54758176;chr12:54756919-54758176;chr12:54757644-54758176	chr12:54757143-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		0.81	12.50	0.30	8.57	5.00	NA	0.00	0.00	0.00	0.00	0.00	4.12	0.00	0.00	0.00	2.00	0.00	3.31	NA	1.35	1.37	1.85	1.30	0.00	NA	4.26	0.73	2.78	2.08	3.12	5.26	2.04	10.00	1.27	1.32	1.05	5.00	1.08	-3.92	0.350337	0.709013
N	jcn_only_AD	RARS2	chr6	-	chr6:88226599-88227886	chr6:88226599-88227763		chr6:88227764-88227886	chr6:88227886-88227887		0.00	0.00	0.00	0.00	0.00	6.12	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	6.45	0.00	0.00	1.89	0.00	0.00	0.00	6.98	0.00	0.00	0.00	6.45	4.08	4.29	0.00	2.78	4.35	0.91	0.00	-0.91	0.881753	0.940836
N	intron_retention		chr12	-	chr12:7623989-7632455				chr12:7623988-7623989;chr12:7632455-7632456		30.30	27.27	48.65	50.00	44.83	47.37	23.08	33.33	NA	NA	NA	NA	NA	20.00	NA	NA	NA	NA	44.44	43.75	41.94	NA	60.00	NA	37.50	31.82	50.00	62.50	47.83	66.67	NA	NA	42.11	NA	70.59	66.67	37.50	31.82	-5.68	0.711902	1.000000
K	intron_retention	SMG9	chr19	-	chr19:44235827-44237009				chr19:44235826-44235827;chr19:44237009-44237010		11.43	4.17	8.00	2.94	4.17	4.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	3.23	4.35	2.86	5.36	6.25	3.08	0.00	5.45	0.00	2.74	3.26	4.17	6.06	4.55	3.23	2.13	3.70	2.16	1.61	-0.54	0.799139	1.000000
N	jcn_only_AA	NAGK	chr2	+	chr2:71299882-71300592;chr2:71299882-71299955	chr2:71299882-71300611		chr2:71299956-71300592;chr2:71300593-71300611	chr2:71300592-71300593;chr2:71300611-71300612		97.31	97.11	100.00	100.00	98.88	100.00	100.00	98.94	98.25	100.00	100.00	100.00	100.00	98.62	100.00	100.00	99.32	100.00	97.87	96.43	98.57	97.56	97.92	100.00	100.00	96.60	96.30	99.17	98.09	100.00	95.80	94.03	97.16	100.00	98.85	97.86	98.94	96.95	-1.98	0.104856	0.663989
N	jcn_only_AA	ZER1	chr9	-	chr9:131497677-131502209	chr9:131497711-131502209		chr9:131497677-131497710	chr9:131497676-131497677		100.00	89.47	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	cassette	MARK3	chr14	+	chr14:103958372-103966492;chr14:103958372-103969218	chr14:103958372-103964838;chr14:103964866-103969218,chr14:103964866-103966492		chr14:103964839-103964865			1.61	1.22	1.27	3.17	7.50	4.23	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	4.48	0.00	0.00	8.93	6.35	5.33	5.00	3.75	4.76	9.64	6.35	5.41	1.82	3.12	1.28	1.41	0.97	6.25	7.04	9.43	4.71	3.73	1.51	-2.22	0.453679	0.754902
N	jcn_only_AD	CASP1	chr11	-	chr11:104896328-104896952;chr11:104896328-104896972	chr11:104896328-104897568					1.28	0.00	2.44	1.26	1.05	2.46	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.03	0.00	0.00	0.00	0.00	4.76	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	1.27	5.88	0.00	1.30	0.00	0.00	0.00	0.611892	0.809875
K	alternative_donor	TBRG4	chr7	-	chr7:45141670-45141945	chr7:45141670-45141879		chr7:45141880-45141945	chr7:45141945-45141946		NA	0.00	7.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	3.12	2.70	4.17	0.00	NA	0.00	5.00	0.00	0.00	0.00	0.00	7.14	0.00	4.55	3.33	0.00	0.00	0.00	0.363217	0.650093
N	alternative_acceptor	CHI3L1	chr1	-	chr1:203148305-203148888;chr1:203148627-203148888;chr1:203148708-203148888;chr1:203148714-203148888	chr1:203148554-203148888		chr1:203148305-203148553;chr1:203148554-203148626;chr1:203148627-203148707;chr1:203148708-203148713	chr1:203148304-203148305;chr1:203148553-203148554;chr1:203148626-203148627;chr1:203148707-203148708		1.72	0.00	0.00	0.00	2.63	1.20	1.09	0.77	1.59	1.13	1.38	1.72	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	6.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	0.00	4.04	0.00	0.44	1.81	0.00	0.39	0.39	0.784156	0.917986
K	intron_retention		chr11	+	chr11:65305654-65305740				chr11:65305653-65305654;chr11:65305740-65305741		7.25	5.79	10.17	7.14	7.69	5.41	0.00	2.50	1.92	2.00	0.00	0.00	2.78	2.44	1.67	1.47	0.00	0.00	3.51	1.92	4.55	6.25	6.90	7.69	7.10	2.63	6.67	2.78	9.09	7.94	8.45	9.76	9.79	8.51	8.00	6.15	4.65	2.56	-2.09	0.705970	1.000000
K	alternative_acceptor	HSPA9	chr5	-	chr5:137891231-137902314	chr5:137897479-137902314		chr5:137891231-137897478	chr5:137891230-137891231		100.00	100.00	87.50	80.00	83.33	80.95	100.00	100.00	100.00	90.91	90.74	100.00	100.00	100.00	100.00	100.00	93.75	100.00	47.73	100.00	55.10	88.46	91.30	87.80	71.43	100.00	100.00	90.62	86.11	84.00	70.83	84.62	50.00	100.00	100.00	90.38	85.72	100.00	14.28	0.180351	0.660713
K	jcn_only_AD	PCK2	chr14	+	chr14:24568446-24568766	chr14:24568457-24568766		chr14:24568446-24568456	chr14:24568445-24568446		1.89	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	3.39	0.00	0.00	0.00	0.00	3.49	0.00	0.00	2.86	0.00	0.00	1.02	0.00	NA	0.00	0.00	3.85	5.56	0.00	0.00	0.00	0.00	0.00	1.46	1.46	0.035167	0.450435
N	alternative_donor	DGKZ	chr11	+	chr11:46397435-46397615	chr11:46397502-46397615		chr11:46397435-46397501	chr11:46397434-46397435		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.33	100.00	100.00	NA	92.86	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	96.30	100.00	100.00	100.00	93.33	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	NOP56	chr20	+	chr20:2635222-2635394				chr20:2635221-2635222;chr20:2635394-2635395		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.52	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	6.45	0.00	0.00	0.00	0.00	0.00	0.879492	1.000000
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299150-23299261;chr14:23299158-23299261	chr14:23299154-23299261		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		0.00	5.45	13.16	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	8.57	0.00	0.00	0.00	NA	29.41	0.00	0.00	NA	0.00	NA	0.00	9.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.508918	0.747808
K	alternative_donor	FDXR	chr17	-	chr17:72868259-72868990;chr17:72868259-72868367	chr17:72868259-72868893		chr17:72868368-72868893;chr17:72868894-72868990	chr17:72868893-72868894;chr17:72868990-72868991		0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	17.65	0.00	0.00	NA	NA	NA	0.00	2.99	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention	ARSA	chr22	-	chr22:51066221-51066418				chr22:51066220-51066221;chr22:51066418-51066419		91.43	100.00	85.42	NA	82.35	NA	90.77	91.36	85.14	84.44	92.86	90.00	87.50	95.83	92.06	88.57	80.95	80.00	90.00	90.32	90.48	83.33	86.54	92.59	100.00	93.24	88.46	100.00	87.80	88.89	92.59	88.89	84.62	83.87	96.43	91.84	90.38	92.01	1.63	0.950243	1.000000
K	cassette	WBP2	chr17	-	chr17:73843691-73844650	chr17:73843691-73843876;chr17:73844012-73844650		chr17:73843877-73844011			92.25	92.00	93.02	90.91	88.33	NA	99.32	100.00	99.58	98.83	100.00	100.00	100.00	100.00	99.02	100.00	98.79	100.00	93.75	94.83	95.65	92.96	82.68	87.88	100.00	95.00	93.83	96.05	97.03	97.10	95.51	92.55	91.30	88.62	89.26	90.68	96.53	95.25	-1.28	0.925515	0.981884
N	alternative_donor	IRF3	chr19	-	chr19:50164086-50164706;chr19:50164086-50165204;chr19:50164086-50165441	chr19:50164086-50165401		chr19:50164707-50165204;chr19:50165205-50165401;chr19:50165402-50165441	chr19:50165204-50165205;chr19:50165401-50165402;chr19:50165441-50165442		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	3.33	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	SGSM3	chr22	+	chr22:40803573-40803792	chr22:40803598-40803792		chr22:40803573-40803597	chr22:40803572-40803573		9.52	12.50	13.64	NA	4.76	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	12.50	0.00	3.23	0.00	0.00	0.00	9.68	10.00	14.71	NA	12.50	10.00	14.29	18.18	9.38	9.09	8.33	5.26	12.00	16.67	20.00	5.26	6.00	8.93	2.93	0.831648	0.950364
K	jcn_only_AD	MAPKAPK5	chr12	+	chr12:112326805-112327843	chr12:112326811-112327843		chr12:112326805-112326810	chr12:112326804-112326805		40.00	52.50	40.00	44.83	51.22	47.22	39.39	30.77	54.55	48.39	41.67	56.25	44.44	45.45	40.62	44.90	42.00	42.42	43.24	50.00	46.81	44.83	48.00	47.83	23.81	70.00	37.93	40.62	33.33	48.00	40.00	50.00	40.00	53.85	46.88	40.00	41.62	42.73	1.10	0.434519	0.696909
N	alternative_last_exon		chr17	+	chr17:40461117-40462524	chr17:40461117-40461394	chr17:40462525-40463961	chr17:40461395-40461704			93.75	88.46	97.37	92.31	88.89	98.10	96.15	96.15	97.96	99.19	100.00	99.60	95.65	96.00	98.28	98.89	97.78	100.00	75.00	94.12	94.74	96.97	96.67	99.31	40.00	95.65	96.00	95.24	95.00	99.37	94.74	96.30	68.42	96.67	96.00	98.53	81.73	95.19	13.47	0.097506	0.315390
K	alternative_first_exon	NADSYN1	chr11	+	chr11:71189516-71191800	chr11:71191321-71191800	chr11:71189441-71189515	chr11:71190340-71191320			54.55	46.88	66.67	NA	42.86	NA	7.69	10.00	15.38	13.33	7.69	7.14	17.65	18.18	32.14	18.75	14.81	14.29	40.00	45.45	32.00	76.92	56.82	71.43	NA	55.56	48.94	63.16	60.71	64.71	50.00	55.56	30.00	57.58	51.11	65.00	30.00	47.73	17.73	0.355041	0.544826
N	jcn_only_AA	CNPY3	chr6	+	chr6:42902337-42903311	chr6:42902337-42903149		chr6:42903150-42903311	chr6:42903311-42903312		8.11	11.23	16.52	7.41	8.24	1.67	15.62	21.43	18.57	9.17	12.09	11.11	17.62	19.61	25.00	12.35	11.98	5.19	10.00	15.62	13.25	10.13	8.13	6.52	9.49	11.76	16.49	10.45	7.48	9.71	10.53	21.21	8.82	9.02	8.05	8.42	10.62	13.69	3.07	0.386797	0.663989
N	jcn_only_AA	SNRPC	chr6	+	chr6:34725329-34725625;chr6:34725329-34730371	chr6:34725329-34725688					100.00	76.74	96.67	90.00	94.87	100.00	96.30	100.00	91.30	92.00	94.29	94.00	96.05	96.67	91.30	97.01	96.55	92.86	85.71	97.87	94.92	95.00	89.19	95.00	100.00	92.31	92.45	85.71	92.77	95.12	81.25	79.59	57.14	89.58	82.00	87.76	90.88	97.27	6.39	0.238259	0.663989
K	alternative_donor	DNAJC19,TUSC2	chr3	-	chr3:50363618-50363815	chr3:50363618-50363787		chr3:50363788-50363815	chr3:50363815-50363816		87.50	78.95	100.00	82.35	89.29	87.84	90.00	90.00	100.00	86.36	100.00	100.00	87.10	86.67	89.47	86.36	88.57	100.00	86.96	93.75	86.27	89.47	88.10	90.00	81.82	NA	90.00	90.48	95.65	88.00	80.77	84.38	89.58	80.65	87.88	85.71	87.03	87.50	0.47	0.493021	0.747660
K	intron_retention		chr19	-	chr19:8615579-8616623				chr19:8615578-8615579;chr19:8616623-8616624		16.08	46.51	23.05	NA	28.12	NA	2.33	2.50	2.70	0.00	1.18	0.00	3.57	3.33	7.50	0.00	3.75	0.00	22.73	12.84	16.22	5.00	13.89	5.26	50.94	11.36	21.97	19.23	18.06	0.00	8.51	11.49	15.15	13.33	17.39	2.08	18.94	9.93	-9.01	0.310252	1.000000
K	intron_retention	NAPA	chr19	-	chr19:47996303-47996375				chr19:47996302-47996303;chr19:47996375-47996376		7.80	6.85	11.49	4.92	6.25	7.14	0.00	0.61	0.61	0.71	0.00	0.55	0.00	0.55	0.87	0.71	0.00	0.00	0.00	6.62	2.90	7.41	9.59	7.93	0.00	4.71	9.89	7.14	2.16	4.81	7.87	10.95	12.00	12.50	7.75	9.09	0.00	5.67	5.67	0.889503	1.000000
N	cassette	STAC3	chr12	-	chr12:57638749-57641908;chr12:57638995-57642488;chr12:57638995-57641908;chr12:57638749-57642488	chr12:57638749-57640586,chr12:57638995-57640586;chr12:57640685-57642488,chr12:57640685-57641908		chr12:57640587-57640684			100.00	100.00	95.24	NA	100.00	89.47	97.30	95.36	91.53	100.00	96.08	100.00	95.38	94.04	91.30	100.00	95.56	95.24	93.62	100.00	97.92	100.00	100.00	100.00	95.35	96.95	96.88	100.00	94.23	88.89	100.00	100.00	97.56	92.00	91.89	93.75	96.34	98.47	2.13	0.420997	0.729966
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49950725-49951083;chr19:49950678-49951083	chr19:49950675-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		4.62	0.00	1.18	2.63	4.05	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	3.12	3.57	3.03	0.00	2.17	0.00	4.81	0.00	0.00	0.00	0.00	0.00	6.15	6.85	5.34	0.00	6.06	4.17	1.56	1.78	0.22	0.909178	0.968555
K	intron_retention	AC010642.1,ERVK3-1	chr19	+	chr19:58823829-58826113				chr19:58823828-58823829;chr19:58826113-58826114		18.18	13.16	18.18	7.14	3.30	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	3.85	7.14	13.33	7.50	10.26	7.14	16.13	0.00	4.55	8.33	5.00	3.70	8.11	14.29	15.56	8.33	12.73	10.34	22.50	3.57	8.94	5.37	0.567562	1.000000
N	coord_cassette	ZNF638	chr2	+	chr2:71645770-71655676	chr2:71645770-71651779;chr2:71651846-71653589;chr2:71654545-71655676		chr2:71651780-71651845;chr2:71653590-71654544			96.30	100.00	96.59	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.00	100.00	100.00	95.24	91.53	96.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	97.50	86.96	95.12	96.23	100.00	100.00	100.00	0.00	0.274657	0.643829
N	alternative_acceptor	PRICKLE4,TOMM6	chr6	+	chr6:41757075-41757305;chr6:41757075-41757246	chr6:41757075-41757268		chr6:41757247-41757268;chr6:41757269-41757305	chr6:41757268-41757269;chr6:41757305-41757306		32.79	29.35	30.25	19.57	21.67	17.88	22.17	22.73	26.09	19.29	18.40	18.10	22.48	18.64	28.12	18.85	18.62	13.10	21.39	28.36	23.51	20.86	20.57	18.85	20.24	25.00	30.63	15.75	16.93	16.98	22.67	26.53	21.41	19.61	22.94	19.30	21.79	23.87	2.08	0.391093	0.709013
K	intron_retention		chr16	+	chr16:30780309-30780506				chr16:30780308-30780309;chr16:30780506-30780507		6.35	0.00	6.10	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	3.85	0.00	3.45	2.78	8.00	0.00	3.33	0.00	3.57	0.00	0.00	6.38	6.76	0.00	4.76	1.75	0.00	0.00	3.59	3.59	0.124778	1.000000
K	alternative_donor	NFAM1,THOC5	chr22	-	chr22:29924456-29925150	chr22:29924456-29924925		chr22:29924926-29925150	chr22:29925150-29925151		0.00	5.88	3.70	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	7.69	6.67	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.856647	0.960074
K	intron_retention	PYCR2,RP4-559A3.7	chr1	-	chr1:226109345-226109557				chr1:226109344-226109345;chr1:226109557-226109558		0.00	10.20	6.98	NA	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	6.38	0.00	0.00	4.00	0.00	0.00	6.45	0.00	0.00	2.33	0.00	0.00	8.82	8.70	0.00	0.00	0.00	0.594508	1.000000
N	cassette	HSPD1	chr2	-	chr2:198353972-198358047	chr2:198353972-198354920;chr2:198355021-198358047		chr2:198354921-198355020			100.00	94.59	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_acceptor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24680816-24680885;chr14:24680713-24680885;chr14:24680788-24680885;chr14:24680719-24680885	chr14:24680799-24680885		chr14:24680713-24680718;chr14:24680719-24680787;chr14:24680788-24680798;chr14:24680799-24680815	chr14:24680712-24680713;chr14:24680718-24680719;chr14:24680787-24680788;chr14:24680798-24680799		93.06	89.47	91.57	95.12	96.77	91.07	97.44	93.94	94.87	96.00	97.56	93.33	94.87	96.77	93.33	96.30	94.67	100.00	86.32	90.00	81.13	93.75	89.41	92.68	97.18	87.27	91.67	96.30	94.35	97.47	87.27	79.75	87.91	95.08	88.16	88.89	92.17	91.53	-0.64	0.755994	0.910562
K	intron_retention	INF2	chr14	+	chr14:105181194-105185131				chr14:105181193-105181194;chr14:105185131-105185132		6.25	25.00	30.77	31.25	39.13	32.35	6.25	0.00	0.00	18.75	NA	18.18	NA	15.38	NA	NA	16.67	NA	25.00	18.18	12.82	60.00	34.62	35.29	25.00	16.67	NA	NA	33.33	23.08	41.67	35.71	40.00	52.38	36.00	34.38	25.00	16.03	-8.97	0.752111	1.000000
K	alternative_donor	ANXA4	chr2	+	chr2:70033565-70035037	chr2:70033631-70035037		chr2:70033565-70033630	chr2:70033564-70033565		93.48	93.94	95.00	NA	93.33	NA	86.36	90.51	90.48	89.06	86.27	82.05	90.87	89.95	97.06	86.79	88.78	85.19	88.89	83.78	100.00	84.62	89.01	88.24	NA	90.21	96.55	82.05	87.95	94.12	88.00	81.48	75.00	80.90	88.12	88.41	88.89	90.08	1.19	0.537648	0.777642
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3677240-3677731	chr20:3677536-3677731		chr20:3677240-3677535	chr20:3677239-3677240		97.64	100.00	100.00	NA	NA	83.33	100.00	100.00	99.33	100.00	98.95	98.00	100.00	100.00	99.74	100.00	100.00	100.00	72.73	96.94	100.00	100.00	96.55	100.00	100.00	100.00	100.00	94.29	100.00	98.33	96.23	96.49	100.00	100.00	100.00	96.49	100.00	98.82	-1.18	0.540066	0.820810
K	intron_retention	FBXW5	chr9	-	chr9:139835916-139835988				chr9:139835915-139835916;chr9:139835988-139835989		10.34	11.59	14.67	12.82	25.00	19.23	1.27	5.08	3.28	5.88	6.56	2.78	1.19	3.77	9.52	7.84	3.28	0.00	13.16	12.50	12.50	16.67	17.46	21.21	15.62	11.76	7.04	5.26	10.00	7.89	21.43	12.75	13.95	9.76	6.82	11.29	12.38	11.05	-1.32	0.999599	1.000000
K	coord_cassette	ITGB5	chr3	-	chr3:124528004-124560229	chr3:124528004-124538585;chr3:124538682-124540159;chr3:124540322-124560229		chr3:124538586-124538681;chr3:124540160-124540321			98.41	100.00	100.00	NA	100.00	NA	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	99.70	100.00	94.74	100.00	89.47	100.00	100.00	100.00	100.00	96.55	97.87	100.00	99.07	100.00	92.86	96.67	100.00	100.00	100.00	98.91	100.00	98.26	-1.74	0.321055	0.643829
N	alternative_donor	TCF25	chr16	+	chr16:89975516-89976998;chr16:89975492-89976998;chr16:89976765-89976998;chr16:89976334-89976998	chr16:89976760-89976998		chr16:89975492-89975515;chr16:89975516-89976333;chr16:89976334-89976759;chr16:89976760-89976764	chr16:89975491-89975492;chr16:89975515-89975516;chr16:89976333-89976334;chr16:89976759-89976760		21.43	44.83	20.00	44.44	35.00	47.83	NA	NA	NA	NA	NA	NA	NA	NA	10.00	10.00	NA	NA	50.00	36.36	30.00	NA	7.14	NA	26.67	50.00	29.41	NA	20.00	14.29	63.64	55.00	35.29	75.00	54.55	65.22	40.06	43.18	3.12	0.740579	0.891105
K	intron_retention	ARRB2	chr17	+	chr17:4619487-4619706				chr17:4619486-4619487;chr17:4619706-4619707		3.40	7.53	4.85	0.00	3.26	NA	0.00	0.00	0.00	0.00	0.39	0.00	0.00	0.00	1.16	0.00	0.00	0.00	2.86	3.36	4.88	0.00	2.82	0.00	22.22	1.78	3.16	0.00	1.37	0.00	0.00	2.17	3.12	0.00	1.06	0.00	2.99	0.89	-2.10	0.522771	1.000000
N	jcn_only_AD	ITGAX	chr16	+	chr16:31388587-31390888;chr16:31388555-31390888;chr16:31388595-31390888	chr16:31388560-31390888		chr16:31388555-31388559;chr16:31388560-31388586;chr16:31388587-31388594	chr16:31388554-31388555;chr16:31388559-31388560;chr16:31388586-31388587		1.14	0.00	4.46	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.63	0.00	0.00	0.00	0.00	0.00	6.25	2.70	2.94	2.58	1.70	2.53	0.00	0.00	0.89	1.03	1.72	2.17	3.70	0.00	0.00	2.46	2.61	1.90	0.00	0.57	0.57	0.930033	0.961177
N	alternative_acceptor		chr11	+	chr11:47436711-47437875;chr11:47436711-47436948	chr11:47436711-47436838		chr11:47436839-47436948;chr11:47436949-47437875	chr11:47436948-47436949;chr11:47437875-47437876		99.19	99.34	98.41	96.46	96.02	95.18	98.25	98.51	97.92	98.21	96.20	94.12	98.48	98.92	98.18	98.85	98.82	88.89	96.21	99.06	96.86	97.67	99.25	97.78	98.75	98.77	98.70	98.68	98.94	97.78	97.96	97.69	96.03	98.13	99.30	97.78	98.37	98.84	0.48	0.183803	0.660713
N	alternative_acceptor	HNRNPH1	chr5	-	chr5:179041961-179042546;chr5:179041779-179042546	chr5:179042190-179042546		chr5:179041779-179041960;chr5:179041961-179042189	chr5:179041778-179041779;chr5:179041960-179041961		5.41	4.55	4.05	1.14	1.50	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00	0.00	0.00	1.92	5.00	3.03	3.16	2.09	2.80	0.00	3.70	2.67	1.20	0.93	1.48	8.33	6.21	4.41	3.21	2.82	2.89	0.96	4.35	3.39	0.262181	0.709013
K	cassette	LAT2	chr7	+	chr7:73635065-73638053	chr7:73635065-73635966;chr7:73636023-73638053		chr7:73635967-73636022			96.84	100.00	98.04	100.00	95.56	NA	100.00	100.00	100.00	100.00	99.09	100.00	99.28	100.00	100.00	99.03	100.00	100.00	100.00	98.33	100.00	100.00	98.82	100.00	95.00	97.83	96.43	97.37	98.84	100.00	100.00	92.68	100.00	98.28	97.47	98.04	100.00	99.16	-0.84	0.834229	0.944391
K	jcn_only_AA	GMPR2	chr14	+	chr14:24707612-24707794;chr14:24707612-24707802	chr14:24707612-24707832		chr14:24707795-24707802;chr14:24707803-24707832	chr14:24707802-24707803;chr14:24707832-24707833		0.00	0.00	3.03	NA	5.26	NA	4.11	2.33	8.57	0.00	1.89	11.76	4.76	5.45	0.00	12.50	7.14	0.00	4.00	0.00	6.82	0.00	7.69	7.14	0.00	8.89	3.70	0.00	3.64	0.00	0.00	5.13	14.29	6.67	5.71	0.00	4.05	1.17	-2.89	0.520092	0.760908
N	cassette	IL18BP	chr11	+	chr11:71710066-71710858;chr11:71710066-71710662;chr11:71710066-71710508;chr11:71710066-71710845;chr11:71710066-71710972	chr11:71710066-71710273;chr11:71710417-71710858,chr11:71710417-71710662,chr11:71710417-71710508,chr11:71710417-71710845,chr11:71710417-71710972		chr11:71710274-71710416			2.86	0.00	11.90	NA	0.00	NA	8.38	6.21	5.36	9.19	9.86	9.05	9.68	7.32	6.19	13.83	10.14	11.25	0.00	2.13	0.00	1.43	4.48	3.33	NA	7.27	11.11	9.38	7.61	7.55	0.00	5.17	10.00	3.64	5.05	3.57	8.38	4.54	-3.85	0.633724	0.867338
K	alternative_donor	GLUL	chr1	-	chr1:182357886-182359631;chr1:182357886-182360309	chr1:182357886-182360813		chr1:182359632-182360309;chr1:182360310-182360813	chr1:182360309-182360310;chr1:182360813-182360814		98.32	95.74	97.19	100.00	100.00	NA	99.36	99.34	99.18	99.06	99.06	98.96	99.40	99.52	98.93	99.20	99.08	99.71	100.00	98.90	98.95	98.09	98.28	98.90	94.87	98.93	99.03	99.34	98.68	100.00	98.14	98.56	94.29	97.70	97.12	98.79	97.55	98.92	1.37	0.197360	0.570816
K	intron_retention	KHSRP	chr19	-	chr19:6415313-6415390				chr19:6415312-6415313;chr19:6415390-6415391		3.03	5.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.00	4.17	0.00	3.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	23.33	11.48	13.64	0.00	0.00	1.56	0.00	1.51	1.51	0.771910	1.000000
N	jcn_only_AA	AD000671.6,U2AF1L4	chr19	-	chr19:36235148-36235223;chr19:36235047-36235223	chr19:36235124-36235223		chr19:36235047-36235123;chr19:36235124-36235147	chr19:36235046-36235047;chr19:36235123-36235124		5.26	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.391002	0.663989
K	alternative_last_exon	SHFM1	chr7	-	chr7:96279832-96324109;chr7:96266619-96324109;chr7:96303172-96324109;chr7:96275245-96324109	chr7:96318279-96324109	chr7:96278507-96279831;chr7:96266552-96266618;chr7:96302561-96303171;chr7:96274703-96275244	chr7:96317263-96318278			95.12	99.12	91.67	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	99.24	90.70	99.04	100.00	98.61	100.00	98.62	93.88	96.08	100.00	100.00	100.00	93.75	91.23	100.00	98.08	98.28	98.53	99.62	94.00	-5.62	0.000828	0.084626
N	cassette	DGUOK	chr2	+	chr2:74174034-74185272;chr2:74174034-74184251	chr2:74174034-74177753;chr2:74177860-74184251,chr2:74177860-74185272		chr2:74177754-74177859			19.75	15.25	14.56	26.09	26.21	11.48	20.69	31.82	21.74	31.25	25.93	28.57	34.09	25.00	20.00	35.00	21.43	20.00	12.50	20.37	13.27	30.00	20.83	30.43	14.29	23.26	21.05	38.89	26.83	33.33	10.91	15.00	14.14	27.50	23.08	18.75	14.77	21.82	7.05	0.458832	0.757194
N	alternative_donor	KLF6,MICU1	chr10	-	chr10:3818596-3821538	chr10:3818596-3819150		chr10:3819151-3821538	chr10:3821538-3821539		99.38	100.00	100.00	96.23	100.00	86.67	100.00	99.46	99.64	100.00	100.00	100.00	100.00	99.30	99.36	100.00	100.00	100.00	100.00	99.42	100.00	99.23	100.00	98.98	100.00	99.06	100.00	98.97	100.00	99.03	99.47	100.00	100.00	100.00	100.00	99.62	100.00	99.40	-0.60	0.000145	0.043347
N	cassette	UBE2Q1	chr1	-	chr1:154524296-154524568;chr1:154524296-154524879	chr1:154524296-154524396;chr1:154524456-154524568,chr1:154524456-154524879		chr1:154524397-154524455			98.02	91.80	92.68	100.00	93.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	98.28	100.00	91.57	100.00	100.00	100.00	98.44	100.00	96.55	100.00	96.59	95.71	92.86	98.80	97.62	98.84	96.43	100.00	3.57	0.159940	0.709176
K	intron_retention	SLC35B1	chr17	-	chr17:47783259-47783565				chr17:47783258-47783259;chr17:47783565-47783566		2.63	0.00	6.06	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	2.38	2.74	6.00	NA	0.00	1.89	0.00	1.59	1.79	3.12	3.70	5.00	3.28	3.70	4.65	0.00	1.31	1.31	0.778132	1.000000
K	alternative_first_exon	TUBB	chr6	+	chr6:30688341-30690313	chr6:30689676-30690313,chr6:30690040-30690313,chr6:30689992-30690313	chr6:30687978-30688340	chr6:30689476-30689675			2.13	4.76	2.21	NA	0.00	NA	0.36	1.67	0.62	1.37	0.45	0.66	0.10	2.25	0.99	1.40	0.25	1.91	NA	2.38	0.00	6.25	1.26	5.06	16.67	3.42	0.88	2.60	0.81	4.26	5.41	5.13	NA	2.80	1.73	2.68	2.56	2.31	-0.25	0.553670	0.676693
N	jcn_only_AA		chr5	.	chr5:176943514-176943725;chr5:176943485-176943725;chr5:176943518-176943725	chr5:176943449-176943725		chr5:176943449-176943484;chr5:176943485-176943513;chr5:176943514-176943517	chr5:176943448-176943449;chr5:176943484-176943485;chr5:176943513-176943514		97.37	100.00	91.67	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	80.00	96.55	100.00	100.00	100.00	100.00	95.83	100.00	100.00	95.35	92.86	100.00	100.00	95.24	100.00	100.00	100.00	100.00	97.37	NA	89.47	100.00	96.97	100.00	98.69	-1.31	0.219903	0.663989
N	alternative_acceptor	FBXW5	chr9	-	chr9:139835916-139835988;chr9:139835855-139835988	chr9:139835930-139835988		chr9:139835855-139835915;chr9:139835916-139835929	chr9:139835854-139835855;chr9:139835915-139835916		4.44	4.00	7.41	6.06	8.11	9.09	1.72	2.17	2.13	2.17	1.69	3.45	0.00	2.38	5.26	2.33	1.96	0.00	5.00	5.41	6.82	3.57	10.87	17.39	9.09	5.00	3.77	3.57	5.26	3.12	12.07	7.32	7.32	7.14	3.57	9.76	4.50	4.72	0.22	0.727817	0.899634
N	jcn_only_AA	PPP1R12C	chr19	-	chr19:55606113-55606658	chr19:55606167-55606658		chr19:55606113-55606166	chr19:55606112-55606113		93.86	100.00	95.92	100.00	98.53	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	97.37	100.00	96.30	97.78	100.00	96.55	94.81	96.61	92.00	97.18	100.00	100.00	100.00	95.56	100.00	100.00	100.00	92.59	91.30	93.88	95.35	97.62	98.51	100.00	96.09	-3.91	0.269249	0.663989
N	alternative_donor	UBL5	chr19	+	chr19:9938644-9939002;chr19:9938741-9939002	chr19:9938661-9939002		chr19:9938644-9938660;chr19:9938661-9938740	chr19:9938643-9938644;chr19:9938660-9938661		93.86	94.25	94.02	92.16	93.23	94.50	91.80	90.91	89.38	91.23	93.96	91.67	92.96	91.16	89.44	90.76	92.23	93.08	92.82	93.27	90.64	94.29	94.39	94.39	92.89	91.76	90.34	91.13	93.31	92.73	93.12	92.24	93.83	92.75	92.38	93.40	92.92	92.44	-0.48	0.254790	0.624867
K	alternative_acceptor	MBD1	chr18	-	chr18:47796189-47799046;chr18:47797911-47799046	chr18:47796182-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		10.20	4.00	8.96	NA	10.00	NA	15.00	25.00	12.00	26.09	13.33	14.29	15.38	20.00	16.67	16.00	9.38	22.22	0.00	9.52	13.64	14.29	14.58	10.34	NA	11.36	7.84	19.05	9.38	13.64	15.00	8.96	0.00	0.00	10.87	11.11	4.00	13.18	9.18	0.090839	0.595160
K	intron_retention		chr7	+	chr7:100273946-100274157				chr7:100273945-100273946;chr7:100274157-100274158		11.82	11.67	10.86	9.68	3.30	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.50	10.27	2.97	7.27	5.17	7.69	4.62	4.24	5.37	0.00	1.11	1.49	19.77	14.48	11.29	7.45	7.58	7.56	6.06	7.25	1.19	0.904733	1.000000
K	cassette	DEXI	chr16	-	chr16:11023417-11035425	chr16:11023417-11027700;chr16:11027862-11035425		chr16:11027701-11027861			0.00	4.82	6.06	7.69	11.76	NA	2.78	8.33	3.57	7.69	4.55	9.09	3.28	0.00	7.50	10.00	2.78	NA	6.25	10.00	6.98	7.14	14.81	NA	10.34	NA	6.25	10.00	13.04	NA	NA	0.00	3.39	11.76	14.29	NA	4.11	4.17	0.06	0.856201	0.951375
K	alternative_donor	RAC2	chr22	-	chr22:37637699-37640329;chr22:37637699-37640174	chr22:37637699-37640153		chr22:37640154-37640174;chr22:37640175-37640329	chr22:37640174-37640175;chr22:37640329-37640330		99.12	96.43	95.79	NA	100.00	NA	98.64	100.00	96.43	94.64	98.63	96.77	98.13	97.67	93.75	100.00	98.92	93.10	NA	95.31	97.44	97.73	100.00	88.24	NA	93.75	98.55	98.04	97.67	NA	100.00	96.00	100.00	98.08	96.72	96.49	98.38	98.40	0.01	0.624750	0.829448
N	alternative_acceptor	LACTB	chr15	+	chr15:63421850-63423184;chr15:63421850-63447849;chr15:63421850-63433478;chr15:63421850-63433199	chr15:63421850-63426576		chr15:63423185-63426576;chr15:63426577-63433199;chr15:63433200-63433478;chr15:63433479-63447849	chr15:63426576-63426577;chr15:63433199-63433200;chr15:63433478-63433479;chr15:63447849-63447850		0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	1.79	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	RMDN1	chr8	-	chr8:87486588-87487048				chr8:87486587-87486588;chr8:87487048-87487049		0.00	7.04	2.63	0.00	4.88	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	15.52	0.00	0.00	NA	5.88	NA	8.00	0.00	0.00	0.00	4.35	0.00	0.00	2.78	5.45	8.33	3.45	0.00	6.25	0.00	-6.25	0.211186	1.000000
N	alternative_donor	ARHGEF11	chr1	-	chr1:156909703-156909998	chr1:156909703-156909782		chr1:156909783-156909998	chr1:156909998-156909999		6.35	18.75	11.27	NA	NA	8.16	0.00	1.41	0.00	2.00	0.00	1.55	0.00	1.06	2.47	0.00	0.00	1.87	NA	6.67	0.00	9.09	3.12	7.35	7.14	6.56	6.15	4.17	4.35	2.86	9.68	7.25	NA	9.76	5.77	6.30	3.57	6.46	2.89	0.812282	0.941166
N	cassette	CES2	chr16	+	chr16:66975550-66976007	chr16:66975550-66975670;chr16:66975752-66976007		chr16:66975671-66975751			100.00	100.00	88.64	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	89.47	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	92.59	NA	100.00	86.36	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	POR	chr7	+	chr7:75612955-75613055				chr7:75612954-75612955;chr7:75613055-75613056		2.94	0.00	4.05	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	0.00	5.56	0.00	1.96	0.00	0.00	0.00	0.00	1.35	1.64	1.16	0.00	2.13	2.74	0.00	2.84	2.33	3.57	0.00	1.06	1.06	0.321598	1.000000
K	intron_retention		chr11	+	chr11:72537635-72537747				chr11:72537634-72537635;chr11:72537747-72537748		7.32	6.90	9.68	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	3.57	0.00	3.03	0.00	2.56	NA	0.00	0.00	8.16	0.00	0.00	NA	0.00	8.20	4.65	9.09	11.90	10.00	1.78	0.00	-1.78	0.876006	1.000000
K	intron_retention		chr17	+	chr17:7483045-7483208				chr17:7483044-7483045;chr17:7483208-7483209		84.42	78.19	86.04	82.29	82.04	77.78	81.87	81.37	85.98	80.46	80.51	80.14	79.54	83.24	86.35	77.87	79.23	80.43	81.00	79.12	80.72	83.94	82.83	83.55	94.23	82.19	84.26	80.42	82.87	81.17	81.48	82.30	79.66	83.07	81.68	82.12	80.33	81.84	1.51	0.167511	1.000000
K	intron_retention	HEXDC	chr17	+	chr17:80397590-80398872				chr17:80397589-80397590;chr17:80398872-80398873		26.32	32.26	36.36	NA	11.76	NA	NA	NA	16.67	NA	NA	NA	NA	13.33	25.00	NA	NA	NA	31.25	27.78	27.27	NA	NA	NA	25.00	37.50	25.00	NA	16.67	NA	41.67	33.33	27.78	NA	NA	NA	29.52	27.78	-1.73	0.289713	1.000000
K	jcn_only_AD	NCOR2	chr12	-	chr12:124810917-124812092	chr12:124810917-124811954		chr12:124811955-124812092	chr12:124812092-124812093		50.00	21.28	40.00	40.00	27.91	40.00	32.61	31.25	23.53	25.00	35.96	45.71	20.75	27.27	26.67	19.40	28.57	23.81	29.41	51.35	35.71	27.50	23.08	22.45	31.58	39.13	33.33	27.27	23.46	18.87	25.93	27.78	15.79	15.56	22.73	21.43	25.34	35.19	9.84	0.050821	0.507362
K	alternative_acceptor	GPAA1	chr8	+	chr8:145138944-145139188;chr8:145138944-145139013	chr8:145138944-145139036		chr8:145139014-145139036;chr8:145139037-145139188	chr8:145139036-145139037;chr8:145139188-145139189		100.00	100.00	100.00	NA	100.00	NA	98.90	100.00	100.00	100.00	100.00	100.00	98.94	100.00	100.00	100.00	100.00	100.00	NA	95.00	100.00	100.00	97.14	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	100.00	100.00	100.00	98.94	100.00	1.06	0.467006	0.769369
N	alternative_donor	SEPT9	chr17	+	chr17:75489147-75493396;chr17:75489332-75493396;chr17:75489159-75493396	chr17:75492470-75493396		chr17:75489147-75489158;chr17:75489159-75489331;chr17:75489332-75492469	chr17:75489146-75489147;chr17:75489158-75489159;chr17:75489331-75489332		7.58	7.69	9.52	2.70	1.54	10.00	0.56	0.00	0.00	0.45	0.63	0.87	1.29	0.00	5.00	0.95	0.96	1.76	5.56	6.38	0.00	6.79	6.56	10.29	13.51	10.00	9.43	2.43	2.91	2.52	5.71	6.67	6.67	8.56	7.55	10.72	6.12	6.04	-0.07	0.722037	0.885082
N	alternative_acceptor	E2F4	chr16	+	chr16:67231815-67232033;chr16:67231815-67231949;chr16:67231815-67233183	chr16:67231815-67231910		chr16:67231911-67231949;chr16:67231950-67232033;chr16:67232034-67233183	chr16:67231949-67231950;chr16:67232033-67232034;chr16:67233183-67233184		100.00	97.56	96.55	95.92	97.75	96.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	96.05	100.00	93.10	100.00	96.00	100.00	98.55	95.12	90.48	100.00	94.55	100.00	98.57	98.18	100.00	100.00	96.55	100.00	98.28	100.00	97.06	100.00	2.94	0.063057	0.580713
K	cassette	HAUS4	chr14	-	chr14:23421669-23424308	chr14:23421669-23421749;chr14:23421893-23424308		chr14:23421750-23421892			100.00	100.00	100.00	NA	100.00	NA	95.06	96.15	93.10	96.15	95.92	93.55	96.34	93.94	91.30	95.00	92.86	92.31	100.00	96.43	100.00	NA	100.00	NA	NA	100.00	92.86	NA	93.33	NA	100.00	100.00	NA	100.00	100.00	100.00	98.17	98.22	0.05	0.955152	0.987421
K	intron_retention	TXNDC12	chr1	-	chr1:52486078-52486597				chr1:52486077-52486078;chr1:52486597-52486598		100.00	92.09	100.00	94.90	94.50	90.60	100.00	97.06	96.97	100.00	97.04	97.54	97.18	96.61	100.00	100.00	100.00	97.12	86.18	96.97	93.52	100.00	97.32	98.15	91.55	97.44	96.63	100.00	96.36	94.95	95.00	97.28	92.55	99.35	97.06	97.03	92.32	97.02	4.70	0.450023	1.000000
K	intron_retention	HNRNPH1	chr5	-	chr5:179044112-179044514				chr5:179044111-179044112;chr5:179044514-179044515		0.00	0.00	10.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	6.25	0.00	4.48	1.25	3.51	0.00	0.00	3.51	0.00	0.00	0.00	4.17	8.33	0.00	3.41	7.81	6.33	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	PLEKHM2	chr1	+	chr1:16047884-16051811				chr1:16047883-16047884;chr1:16051811-16051812		7.50	8.11	6.00	NA	13.33	NA	0.00	1.94	0.00	0.00	0.84	0.96	0.00	1.11	0.00	0.85	0.00	1.79	NA	4.65	NA	3.70	4.40	4.67	5.41	3.90	2.44	7.32	6.15	8.82	0.00	5.41	21.43	3.75	7.14	2.88	5.41	2.92	-2.49	0.753517	1.000000
K	coord_cassette	PLD3	chr19	+	chr19:40854676-40872325	chr19:40854676-40871459;chr19:40871493-40871624;chr19:40871838-40872325		chr19:40871460-40871492;chr19:40871625-40871837			19.23	31.43	15.00	NA	27.27	NA	88.71	93.22	79.07	92.65	95.52	89.23	89.13	96.30	84.85	94.74	91.57	73.91	36.36	32.69	70.83	30.00	9.62	14.89	25.00	40.00	27.27	45.45	63.64	36.84	59.18	58.33	25.00	20.00	45.95	21.15	33.89	49.59	15.70	0.689596	0.841098
K	jcn_only_AA	CTC-459F4.3,HMG20B	chr19	+	chr19:3578112-3578699	chr19:3578112-3578506		chr19:3578507-3578699	chr19:3578699-3578700		90.00	98.23	97.78	93.18	93.62	97.56	97.85	100.00	97.73	100.00	96.00	100.00	96.30	96.77	100.00	97.44	100.00	100.00	100.00	100.00	95.28	96.30	97.22	100.00	96.55	100.00	100.00	100.00	100.00	100.00	97.53	96.47	95.24	100.00	93.02	97.78	97.20	98.77	1.57	0.990361	0.997790
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100961867-100962534;chr9:100961871-100962534	chr9:100961819-100962534		chr9:100961819-100961866;chr9:100961867-100961870	chr9:100961818-100961819;chr9:100961866-100961867		0.00	0.00	0.00	0.00	3.03	NA	0.00	0.00	0.00	9.52	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	5.26	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.25	2.63	NA	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA		chr13	+	chr13:115030716-115037752;chr13:115030716-115035037;chr13:115030716-115037645	chr13:115030716-115037658		chr13:115035038-115037645;chr13:115037646-115037658;chr13:115037659-115037752	chr13:115037645-115037646;chr13:115037658-115037659;chr13:115037752-115037753		87.88	98.98	100.00	91.89	95.24	97.14	100.00	100.00	92.00	97.73	93.88	100.00	100.00	95.45	97.22	94.44	93.88	100.00	86.11	94.74	90.74	100.00	92.96	88.89	100.00	88.89	97.83	100.00	92.45	96.00	100.00	90.00	88.14	92.31	92.31	97.22	99.49	95.09	-4.40	0.766854	0.896441
K	intron_retention	ARFIP2	chr11	-	chr11:6498499-6498947				chr11:6498498-6498499;chr11:6498947-6498948		16.13	11.76	20.00	18.75	15.22	13.33	8.00	0.00	10.00	13.33	21.43	NA	9.09	0.00	15.38	12.00	26.32	NA	12.00	30.00	13.33	30.00	23.26	28.57	0.00	21.74	13.89	27.78	15.00	21.88	19.23	30.61	12.50	14.71	23.53	23.68	10.43	17.68	7.25	0.770151	1.000000
N	jcn_only_AD	IFI35	chr17	+	chr17:41165352-41165492;chr17:41165346-41165492;chr17:41165397-41165492	chr17:41165391-41165492		chr17:41165346-41165351;chr17:41165352-41165390;chr17:41165391-41165396	chr17:41165345-41165346;chr17:41165351-41165352;chr17:41165390-41165391		53.45	60.34	45.10	48.39	55.81	49.09	42.37	37.45	40.42	31.71	48.39	31.94	36.49	40.65	41.81	41.90	33.96	33.64	55.56	48.82	42.67	55.56	53.33	48.24	56.52	44.56	51.95	50.35	48.28	41.16	50.59	49.66	51.02	41.94	68.00	52.16	53.29	46.69	-6.60	0.348735	0.657607
N	jcn_only_AA	LEO1	chr15	-	chr15:52230483-52239488;chr15:52233796-52239488	chr15:52230458-52239488		chr15:52230458-52230482;chr15:52230483-52233795	chr15:52230457-52230458;chr15:52230482-52230483		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	94.74	92.00	100.00	86.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	PSMB7	chr9	-	chr9:127115989-127119042				chr9:127115988-127115989;chr9:127119042-127119043		22.16	6.45	47.09	1.88	2.05	0.94	32.64	8.57	25.13	52.91	51.82	22.12	32.24	5.58	8.75	27.99	52.12	19.00	0.61	13.71	2.12	12.20	21.20	9.48	2.44	6.94	28.06	16.96	15.08	4.73	2.53	14.80	1.01	27.07	30.29	12.69	4.45	7.76	3.31	0.996664	1.000000
K	intron_retention	RELB	chr19	+	chr19:45537571-45537708				chr19:45537570-45537571;chr19:45537708-45537709		5.00	0.00	5.00	4.49	2.74	1.98	0.00	1.57	0.29	2.31	0.00	0.00	0.00	1.27	0.00	2.21	1.87	0.00	2.44	5.05	3.18	4.94	5.61	0.00	0.00	1.67	2.70	3.57	1.56	0.00	4.03	3.39	8.11	6.78	3.37	2.45	0.00	2.85	2.85	0.778891	1.000000
N	cassette	TXNDC17	chr17	+	chr17:6544548-6545568;chr17:6544473-6545568	chr17:6544548-6545072,chr17:6544473-6545072;chr17:6545155-6545568		chr17:6545073-6545154			97.78	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.80	100.00	100.00	97.62	98.70	100.00	96.94	98.57	97.83	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.37	97.00	95.96	98.28	100.00	100.00	98.90	99.28	0.38	0.997768	0.999219
N	intron_retention		chr19	+	chr19:18286508-18287958				chr19:18286507-18286508;chr19:18287958-18287959		92.00	90.53	95.95	91.67	91.56	92.00	87.33	87.12	90.67	87.50	82.68	89.36	90.38	86.67	91.53	90.11	84.54	88.24	95.16	92.82	93.70	91.04	91.45	85.07	100.00	85.85	87.50	87.04	89.51	88.14	91.91	95.17	94.73	87.78	89.42	92.50	92.63	89.52	-3.11	0.352384	1.000000
K	alternative_last_exon	LRP1	chr12	+	chr12:57539274-57547990	chr12:57539274-57543462,chr12:57539274-57542763	chr12:57547991-57548153	chr12:57543463-57543842			8.33	8.82	6.67	NA	NA	NA	1.23	1.39	2.27	1.65	2.07	1.18	1.96	0.00	0.00	5.56	3.11	1.69	45.45	NA	NA	NA	15.00	3.03	32.00	8.33	6.25	NA	13.79	18.18	NA	NA	42.86	7.14	6.67	2.56	20.41	4.86	-15.55	0.091274	0.305892
K	intron_retention	PLOD3	chr7	-	chr7:100853955-100854871				chr7:100853954-100853955;chr7:100854871-100854872		3.45	0.00	0.00	0.00	0.00	NA	1.09	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.11	0.00	6.25	0.00	0.00	0.00	7.04	0.00	0.00	0.00	0.00	2.70	6.82	0.00	0.00	0.00	8.33	4.55	3.57	1.61	1.01	0.00	-1.01	0.516331	1.000000
K	intron_retention		chr19	-	chr19:55607704-55610151				chr19:55607703-55607704;chr19:55610151-55610152		1.45	6.45	4.17	0.00	4.00	NA	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.57	0.00	0.00	9.26	0.00	25.00	2.78	2.74	8.00	4.35	0.00	2.44	1.43	0.00	5.56	6.38	2.56	2.50	1.94	-0.56	0.549124	1.000000
K	intron_retention		chr11	+	chr11:10327646-10327878				chr11:10327645-10327646;chr11:10327878-10327879		6.30	0.00	7.11	4.07	1.52	4.00	0.00	0.47	0.35	0.27	0.00	0.52	0.00	0.56	0.62	1.04	0.00	0.68	10.00	6.30	9.80	4.17	4.30	3.40	NA	2.77	3.38	3.31	2.56	3.76	10.46	11.95	18.92	3.92	5.13	3.92	0.00	4.54	4.54	0.998975	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7123366-7123440				chr17:7123365-7123366;chr17:7123440-7123441		1.05	0.00	3.90	NA	0.00	NA	0.00	3.23	7.69	1.25	2.63	0.00	3.48	8.51	6.45	5.22	1.71	1.27	0.00	0.00	5.00	13.04	7.53	0.00	5.00	0.00	0.00	2.04	3.90	0.00	0.00	4.35	0.00	5.00	8.20	0.00	0.00	0.53	0.53	0.951108	1.000000
K	coord_cassette	IDH2	chr15	-	chr15:90631980-90645507	chr15:90631980-90633710;chr15:90633877-90634784;chr15:90634877-90645507		chr15:90633711-90633876;chr15:90634785-90634876			97.62	100.00	97.30	NA	96.55	NA	100.00	97.67	98.55	100.00	99.00	100.00	100.00	100.00	100.00	97.65	99.15	100.00	100.00	100.00	100.00	100.00	98.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	97.87	100.00	100.00	100.00	0.00	0.174718	0.643829
N	cassette	COMMD7	chr20	-	chr20:31291874-31294384	chr20:31291874-31292241;chr20:31292292-31294384		chr20:31292242-31292291			90.32	100.00	100.00	100.00	92.59	NA	100.00	100.00	93.75	100.00	100.00	100.00	94.59	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	NA	100.00	100.00	95.00	100.00	100.00	89.47	93.94	100.00	89.29	100.00	96.88	100.00	100.00	0.00	0.369712	0.709176
K	intron_retention	STUB1	chr16	+	chr16:731904-732019				chr16:731903-731904;chr16:732019-732020		92.00	97.83	92.86	96.55	95.20	97.48	96.08	NA	94.12	100.00	95.65	100.00	97.62	NA	92.86	94.74	100.00	94.44	96.58	88.24	93.44	92.31	96.08	94.44	96.84	81.82	100.00	90.91	100.00	93.10	92.86	88.89	93.85	100.00	93.94	100.00	96.71	90.12	-6.59	0.114677	1.000000
K	jcn_only_AA	PCBD1	chr10	-	chr10:72642243-72644908	chr10:72643806-72644908		chr10:72642243-72643805	chr10:72642242-72642243		83.87	82.05	88.46	70.00	81.52	62.16	95.38	89.06	94.83	95.12	95.02	95.19	92.71	95.16	89.39	96.18	95.40	97.27	73.24	93.75	89.25	90.32	91.94	96.67	67.86	84.62	86.79	94.64	94.27	86.00	80.00	84.62	75.51	84.51	87.65	93.98	78.78	86.84	8.06	0.233354	0.663989
N	coord_cassette	PHB2	chr12	-	chr12:7075664-7079358	chr12:7075664-7077054;chr12:7077185-7077573;chr12:7077872-7079358		chr12:7077055-7077184;chr12:7077574-7077871			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
K	intron_retention	PTOV1	chr19	+	chr19:50363441-50363524				chr19:50363440-50363441;chr19:50363524-50363525		6.41	3.08	11.11	4.26	4.22	1.36	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	2.27	0.00	4.24	12.20	4.14	3.85	9.09	6.67	4.17	6.45	6.98	0.00	4.62	1.64	17.95	13.33	5.86	8.57	8.16	6.52	3.62	6.43	2.80	0.441722	1.000000
K	cassette	GPR108	chr19	-	chr19:6732561-6733178	chr19:6732561-6732997;chr19:6733074-6733178		chr19:6732998-6733073			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	98.11	100.00	NA	100.00	98.21	100.00	100.00	100.00	98.18	100.00	91.67	97.06	97.67	100.00	100.00	100.00	0.00	0.463457	0.759738
N	jcn_only_AD	MAPKAPK2	chr1	+	chr1:206905430-206905919;chr1:206905433-206905919	chr1:206905265-206905919		chr1:206905265-206905429;chr1:206905430-206905432	chr1:206905264-206905265;chr1:206905429-206905430		98.35	100.00	97.62	96.36	100.00	93.67	95.59	97.54	98.66	96.28	97.30	96.08	98.25	100.00	97.06	97.69	96.91	96.08	90.91	96.49	97.44	98.74	96.46	96.99	NA	96.70	97.87	97.52	96.05	96.63	95.35	95.21	100.00	98.77	97.75	96.80	98.25	97.12	-1.13	0.813781	0.912862
K	intron_retention	LLNLR-284B4.1	chr19	+	chr19:1010611-1010857				chr19:1010610-1010611;chr19:1010857-1010858		88.89	81.54	84.76	81.67	83.33	76.92	100.00	85.29	81.67	84.91	88.24	82.76	86.15	88.10	78.57	82.14	86.30	82.22	91.43	91.49	91.67	91.67	92.38	89.19	80.28	91.67	87.50	89.66	88.64	92.86	91.94	94.90	91.36	86.21	91.94	91.80	88.75	90.19	1.44	0.966249	1.000000
K	coord_cassette	HAUS1	chr18	+	chr18:43685335-43703264	chr18:43685335-43698146;chr18:43698283-43699891;chr18:43700027-43702432;chr18:43702557-43703264		chr18:43698147-43698282;chr18:43699892-43700026;chr18:43702433-43702556			90.00	100.00	88.24	NA	86.67	NA	100.00	100.00	94.12	NA	100.00	NA	94.87	100.00	100.00	100.00	97.06	NA	100.00	100.00	100.00	NA	94.44	NA	NA	100.00	100.00	NA	91.67	NA	NA	100.00	NA	NA	93.33	NA	100.00	100.00	0.00	0.772088	0.887901
K	intron_retention		chr19	-	chr19:2233397-2233529				chr19:2233396-2233397;chr19:2233529-2233530		100.00	95.00	100.00	95.08	90.22	92.92	94.44	100.00	100.00	100.00	100.00	90.00	100.00	93.10	94.59	100.00	100.00	NA	90.79	100.00	94.37	87.50	94.12	100.00	95.35	100.00	90.91	91.30	96.72	100.00	95.83	100.00	89.02	82.86	100.00	90.00	94.72	100.00	5.28	0.156735	1.000000
N	jcn_only_AA	C1orf162,PIK3CD	chr1	+	chr1:112020051-112020856;chr1:112020051-112020347	chr1:112020051-112020272		chr1:112020273-112020347;chr1:112020348-112020856	chr1:112020347-112020348;chr1:112020856-112020857		9.72	20.75	15.91	13.33	16.67	18.75	17.86	10.53	18.18	9.46	7.57	10.00	14.29	26.67	NA	13.89	11.00	13.95	14.29	11.11	20.69	16.67	25.26	13.64	18.92	31.58	15.87	18.18	17.26	20.69	NA	18.42	21.62	25.00	29.49	22.64	18.39	11.11	-7.28	0.994821	0.997956
N	alternative_acceptor	SRRT	chr7	+	chr7:100482460-100482552;chr7:100482460-100482543	chr7:100482460-100482548		chr7:100482544-100482548;chr7:100482549-100482552	chr7:100482548-100482549;chr7:100482552-100482553		7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	4.65	NA	0.00	0.00	3.70	0.00	0.00	0.00	0.198254	0.664085
K	intron_retention	RNF31	chr14	+	chr14:24627409-24629072				chr14:24627408-24627409;chr14:24629072-24629073		4.60	7.69	7.04	5.56	4.35	2.14	0.00	2.17	0.00	0.00	0.00	0.00	0.00	4.65	0.00	0.00	0.00	0.00	3.03	2.70	2.30	3.23	3.23	6.67	2.70	3.53	5.17	3.03	4.00	4.00	2.94	4.31	2.60	5.71	7.69	8.33	2.65	3.23	0.58	0.757888	1.000000
N	alternative_donor		chr14	-	chr14:24615450-24615554;chr14:24615450-24616322;chr14:24615450-24615551	chr14:24615450-24615742		chr14:24615552-24615554;chr14:24615555-24615742;chr14:24615743-24616322	chr14:24615554-24615555;chr14:24615742-24615743;chr14:24616322-24616323		96.05	100.00	96.25	100.00	100.00	97.73	100.00	100.00	99.31	97.96	100.00	97.18	100.00	98.85	97.80	100.00	100.00	100.00	100.00	96.84	99.31	96.30	100.00	93.62	100.00	98.26	97.37	97.83	100.00	97.54	98.53	96.81	100.00	95.83	96.00	93.10	100.00	98.40	-1.60	0.021883	0.284863
K	alternative_acceptor	SLC11A1	chr2	+	chr2:219247826-219249041	chr2:219247826-219248965		chr2:219248966-219249041	chr2:219249041-219249042		97.14	100.00	98.56	NA	94.74	NA	98.88	98.15	97.33	96.30	100.00	100.00	94.90	98.04	100.00	97.33	95.65	100.00	NA	95.65	95.45	100.00	100.00	100.00	100.00	94.79	96.88	100.00	100.00	NA	93.55	94.81	NA	97.62	100.00	100.00	99.44	96.40	-3.04	0.176805	0.660713
N	alternative_donor	CYSTM1	chr5	+	chr5:139568768-139574030;chr5:139554789-139574030	chr5:139554871-139574030		chr5:139554789-139554870;chr5:139554871-139568767	chr5:139554788-139554789;chr5:139554870-139554871		97.14	100.00	88.57	100.00	100.00	NA	100.00	96.88	100.00	94.74	95.49	95.00	96.23	96.73	100.00	100.00	98.84	100.00	100.00	95.58	97.44	100.00	94.44	100.00	NA	95.93	100.00	100.00	91.30	93.94	96.43	96.67	100.00	100.00	100.00	100.00	100.00	96.58	-3.42	0.017692	0.264212
K	intron_retention	GSN	chr9	+	chr9:124064428-124081012				chr9:124064427-124064428;chr9:124081012-124081013		84.29	91.61	92.23	100.00	93.82	100.00	90.48	89.74	88.89	93.33	93.78	95.20	91.36	100.00	87.27	89.40	95.34	96.57	95.24	88.10	87.34	91.57	92.90	100.00	97.06	93.75	89.66	90.38	92.61	100.00	91.67	95.16	92.11	89.80	89.91	90.72	91.86	90.70	-1.16	0.940533	1.000000
N	alternative_acceptor		chr22	+	chr22:39916757-39917336;chr22:39916757-39917376;chr22:39916757-39917379;chr22:39916757-39917436	chr22:39916757-39917358		chr22:39917337-39917358;chr22:39917359-39917376;chr22:39917377-39917379;chr22:39917380-39917436	chr22:39917358-39917359;chr22:39917376-39917377;chr22:39917379-39917380;chr22:39917436-39917437		93.33	97.44	93.44	94.44	96.36	92.86	98.15	98.59	100.00	97.46	98.06	98.70	98.00	100.00	99.05	96.53	97.39	95.52	91.67	90.48	94.44	92.21	96.52	93.75	NA	95.74	95.45	96.88	94.57	96.72	90.57	93.24	91.67	94.57	95.12	93.88	97.44	94.53	-2.91	0.794480	0.923537
K	alternative_acceptor	RPL28	chr19	+	chr19:55899417-55902921	chr19:55899417-55899610		chr19:55899611-55902921	chr19:55902921-55902922		94.12	97.07	88.24	95.65	94.54	98.55	90.48	86.79	86.76	91.67	92.86	91.43	92.16	87.04	91.18	87.50	93.33	96.77	97.07	89.13	95.97	86.11	88.51	88.57	98.45	92.98	87.50	97.78	90.54	95.45	95.65	85.14	97.20	91.30	87.72	90.54	97.07	91.06	-6.01	0.054713	0.570243
K	intron_retention	RPL10A	chr6	+	chr6:35436651-35436723				chr6:35436650-35436651;chr6:35436723-35436724		3.64	0.21	3.03	1.05	0.19	0.00	0.00	0.00	0.00	0.16	0.15	0.00	0.00	0.00	0.34	0.31	0.55	0.23	0.00	7.89	0.40	1.29	1.10	1.40	0.00	0.00	0.85	0.56	0.79	0.00	17.31	5.17	0.62	1.48	1.44	0.53	0.00	1.82	1.82	0.256108	1.000000
N	alternative_acceptor	C1orf162,PIK3CD	chr1	+	chr1:112020051-112020856;chr1:112020051-112020347	chr1:112020051-112020272		chr1:112020273-112020347;chr1:112020348-112020856	chr1:112020347-112020348;chr1:112020856-112020857		12.26	19.07	17.86	13.79	16.12	17.39	15.38	5.88	16.67	7.55	6.91	9.23	12.06	26.67	NA	12.73	10.10	13.33	12.93	12.50	19.70	16.67	23.63	16.13	17.27	29.03	16.84	19.23	17.23	21.05	16.67	19.51	18.85	22.81	28.19	21.21	16.32	14.59	-1.74	0.758982	0.910949
N	jcn_only_AA	ELAC2	chr17	-	chr17:12898196-12898279	chr17:12898202-12898279		chr17:12898196-12898201	chr17:12898195-12898196		100.00	100.00	88.89	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.08	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.00	96.88	100.00	NA	100.00	100.00	100.00	96.67	100.00	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AA	CASP1	chr11	-	chr11:104905202-104905833;chr11:104905430-104905833	chr11:104905116-104905833		chr11:104905116-104905201;chr11:104905202-104905429	chr11:104905115-104905116;chr11:104905201-104905202		19.19	33.33	16.50	41.18	24.14	NA	11.54	10.76	12.23	10.83	17.44	18.10	15.62	12.28	8.33	12.15	9.38	10.59	NA	12.20	29.41	16.98	25.00	18.68	61.11	14.78	17.24	20.56	18.64	15.38	17.65	19.32	NA	16.92	22.86	14.39	24.47	13.53	-10.94	0.253058	0.663989
K	intron_retention	CYB561A3	chr11	-	chr11:61118620-61120456				chr11:61118619-61118620;chr11:61120456-61120457		1.37	7.69	4.20	0.00	1.72	NA	0.89	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.16	0.00	2.35	2.03	0.00	0.00	3.53	2.90	0.00	0.00	3.33	1.45	3.01	9.52	3.06	1.82	2.65	0.45	1.41	0.97	0.961013	1.000000
N	jcn_only_AA	ZDHHC3	chr3	-	chr3:44964460-44970797;chr3:44968340-44970797;chr3:44961830-44970797	chr3:44959636-44970797		chr3:44959636-44961829;chr3:44961830-44964459;chr3:44964460-44968339	chr3:44959635-44959636;chr3:44961829-44961830;chr3:44964459-44964460		11.43	0.00	25.00	0.00	5.00	12.50	24.56	19.35	26.83	16.13	30.61	27.59	20.45	23.08	18.75	27.27	20.59	0.00	15.38	18.18	0.00	NA	29.17	23.08	0.00	20.00	15.56	28.57	16.67	21.43	0.00	12.50	15.79	31.25	13.33	20.00	15.59	18.77	3.18	0.639533	0.838192
K	alternative_acceptor	ALDH3B1	chr11	+	chr11:67790230-67793476	chr11:67790230-67791675		chr11:67791676-67793476	chr11:67793476-67793477		7.41	4.17	9.80	NA	8.33	NA	0.78	2.33	0.00	0.00	0.00	0.00	0.94	2.50	3.57	0.00	1.20	0.00	11.11	4.76	4.35	6.67	4.08	0.00	11.54	7.14	10.34	9.09	5.26	NA	6.67	9.38	11.76	8.33	8.57	3.03	7.64	5.71	-1.92	0.527855	0.811024
N	jcn_only_AD	LRP1	chr12	+	chr12:57578686-57578863	chr12:57578774-57578863		chr12:57578686-57578773	chr12:57578685-57578686		100.00	94.64	100.00	NA	NA	NA	100.00	98.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.21	100.00	100.00	0.00	0.747457	0.868378
K	intron_retention		chr19	+	chr19:36037932-36038020				chr19:36037931-36037932;chr19:36038020-36038021		3.57	1.09	3.33	2.02	2.96	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	1.20	0.47	0.00	1.03	0.00	1.74	6.49	4.19	4.05	0.00	2.70	1.75	0.00	2.41	3.12	2.70	5.56	2.97	2.11	2.54	2.05	0.85	1.35	0.50	0.566803	1.000000
K	alternative_last_exon	CALU,UMAD1	chr7	+	chr7:7841375-8007329;chr7:7841375-8043537	chr7:7841375-7916911	chr7:8043538-8043689	chr7:7916912-7918854			85.19	76.92	91.43	NA	70.59	NA	84.00	100.00	91.67	NA	85.71	90.00	92.59	100.00	100.00	81.82	88.00	NA	72.73	89.47	90.00	NA	80.95	70.00	NA	81.82	92.59	NA	92.31	NA	81.82	86.96	50.00	78.57	88.89	66.67	76.92	87.33	10.41	0.119855	0.340352
N	cassette	NCF2	chr1	-	chr1:183539975-183546733;chr1:183539975-183543621	chr1:183539975-183542319;chr1:183542428-183546733,chr1:183542428-183543621		chr1:183542320-183542427			97.40	100.00	100.00	83.33	99.03	100.00	96.75	97.67	98.44	98.21	97.65	98.75	98.98	97.86	100.00	97.88	99.50	99.16	100.00	97.04	100.00	98.48	97.90	98.54	100.00	98.47	100.00	100.00	100.00	99.16	95.74	100.00	100.00	98.27	98.19	98.06	100.00	97.53	-2.47	0.016489	0.372211
N	jcn_only_AD	MARCKS	chr6	+	chr6:114179024-114180858;chr6:114180041-114180858;chr6:114179958-114180858;chr6:114180383-114180858	chr6:114180549-114180858		chr6:114179024-114179957;chr6:114179958-114180040;chr6:114180041-114180382;chr6:114180383-114180548	chr6:114179023-114179024;chr6:114179957-114179958;chr6:114180040-114180041;chr6:114180382-114180383		0.00	0.00	0.51	0.00	0.00	NA	0.31	0.54	0.83	3.86	0.18	6.37	0.00	0.42	1.08	1.34	0.00	3.03	0.00	0.00	0.00	1.60	0.96	3.96	0.00	0.26	0.40	0.00	0.00	1.36	0.00	0.96	0.00	1.02	0.00	1.68	0.00	0.13	0.13	0.209834	0.657607
N	jcn_only_AD	C1QC	chr1	+	chr1:22970208-22970503;chr1:22970380-22970503;chr1:22965709-22970503;chr1:22965655-22970503	chr1:22970231-22970503		chr1:22965655-22965708;chr1:22965709-22970207;chr1:22970208-22970230;chr1:22970231-22970379	chr1:22965654-22965655;chr1:22965708-22965709;chr1:22970207-22970208;chr1:22970230-22970231		7.02	7.20	7.95	7.36	8.82	7.53	9.54	10.10	11.30	10.53	9.10	9.85	10.49	11.35	10.39	8.74	9.18	9.46	7.19	9.69	8.84	6.98	8.63	7.66	4.67	8.73	7.98	9.07	8.86	8.19	9.00	5.47	6.99	8.23	7.34	7.14	7.20	9.34	2.15	0.147751	0.657607
K	alternative_donor	SMIM7	chr19	-	chr19:16757612-16757930	chr19:16757612-16757906		chr19:16757907-16757930	chr19:16757930-16757931		83.33	68.57	92.31	72.73	85.00	80.00	92.11	89.47	96.00	73.33	64.71	NA	85.37	93.33	93.10	88.00	76.47	NA	68.97	90.00	85.71	NA	76.92	NA	89.66	69.23	85.71	75.00	89.29	NA	83.33	76.92	70.00	91.67	85.00	85.71	77.69	86.40	8.72	0.347261	0.650093
N	jcn_only_AD	ZNF330	chr4	+	chr4:142142209-142143519;chr4:142142241-142143519;chr4:142118096-142143519;chr4:142142263-142143519;chr4:142142232-142143519	chr4:142142171-142143519		chr4:142118096-142142170;chr4:142142171-142142208;chr4:142142209-142142231;chr4:142142232-142142240;chr4:142142241-142142262	chr4:142118095-142118096;chr4:142142170-142142171;chr4:142142208-142142209;chr4:142142231-142142232;chr4:142142240-142142241		0.00	0.00	0.00	0.00	0.00	4.17	3.45	0.00	0.00	5.00	3.00	6.25	3.00	0.00	0.00	0.00	2.11	0.00	0.00	0.00	0.00	3.85	3.70	4.76	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	3.23	2.44	0.00	0.00	0.00	0.00	0.175984	0.657607
K	intron_retention	FAM32A	chr19	+	chr19:16296328-16296434				chr19:16296327-16296328;chr19:16296434-16296435		5.22	12.16	11.45	5.26	12.77	3.33	5.52	4.65	7.10	5.52	6.44	3.23	5.95	8.09	6.34	5.77	3.88	3.25	3.12	10.19	8.96	12.90	9.73	11.11	0.00	6.19	10.89	6.25	8.89	7.87	8.18	11.94	14.29	9.09	7.29	6.47	5.73	7.14	1.41	0.705366	1.000000
N	alternative_acceptor	ADAM8	chr10	-	chr10:135086365-135086460	chr10:135086371-135086460		chr10:135086365-135086370	chr10:135086364-135086365		96.08	100.00	98.15	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.53	100.00	NA	100.00	100.00	100.00	94.12	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.67	100.00	100.00	0.00	0.363217	0.709013
K	cassette	NARF	chr17	+	chr17:80426773-80436675;chr17:80430575-80436675	chr17:80430575-80436446,chr17:80426773-80436446;chr17:80436544-80436675		chr17:80436447-80436543			5.19	0.00	5.00	NA	0.00	NA	0.00	21.43	15.62	11.76	0.00	9.52	2.94	5.00	13.64	NA	0.00	0.00	5.56	4.35	4.44	0.00	0.00	11.11	0.00	15.38	4.00	0.00	0.00	8.33	9.68	7.69	0.00	0.00	4.76	6.98	0.00	7.44	7.44	0.025480	0.412736
N	alternative_acceptor	SYVN1	chr11	-	chr11:64896187-64897200;chr11:64896309-64897200	chr11:64896263-64897200		chr11:64896187-64896262;chr11:64896263-64896308	chr11:64896186-64896187;chr11:64896262-64896263		4.35	0.00	3.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.55	4.35	NA	0.00	2.94	NA	0.00	0.00	0.00	2.70	0.00	0.00	5.00	3.45	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	FIBP	chr11	-	chr11:65652470-65652548				chr11:65652469-65652470;chr11:65652548-65652549		4.44	1.85	0.00	0.00	2.22	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	1.69	5.36	2.41	0.00	2.82	0.00	1.63	2.38	3.03	4.17	1.59	0.00	9.80	5.56	2.44	0.00	0.00	2.00	1.66	3.41	1.75	0.468014	1.000000
N	alternative_acceptor		chr7	+	chr7:112108171-112110953;chr7:112108171-112112219	chr7:112108171-112112273		chr7:112110954-112112219;chr7:112112220-112112273	chr7:112112219-112112220;chr7:112112273-112112274		95.77	100.00	96.88	100.00	100.00	100.00	100.00	100.00	98.84	100.00	100.00	96.97	100.00	100.00	98.78	97.14	100.00	100.00	100.00	96.20	100.00	95.29	96.43	95.45	NA	95.89	98.28	94.74	97.62	97.37	98.99	98.34	100.00	93.39	93.67	95.27	100.00	97.59	-2.41	0.048633	0.570243
K	alternative_last_exon	SCO2,TYMP	chr22	-	chr22:50962854-50964429	chr22:50964348-50964429	chr22:50961997-50962853	chr22:50964181-50964347			96.34	96.04	93.32	96.62	95.18	97.53	97.74	94.97	82.05	94.12	94.44	95.88	99.54	96.86	93.80	94.37	99.40	97.84	99.62	98.31	97.30	96.13	95.69	95.30	97.81	95.72	92.83	92.40	93.13	97.52	94.74	89.63	95.45	94.44	95.50	96.64	97.78	96.03	-1.75	0.115009	0.333781
N	cassette	CFAP36	chr2	+	chr2:55771211-55772042	chr2:55771211-55771355;chr2:55771506-55772042		chr2:55771356-55771505			94.74	88.64	100.00	100.00	95.45	94.12	100.00	100.00	100.00	100.00	100.00	100.00	95.24	93.33	100.00	100.00	100.00	NA	94.74	92.31	96.60	NA	100.00	100.00	100.00	100.00	96.00	100.00	94.59	96.55	94.59	95.95	90.48	100.00	100.00	95.00	94.99	94.66	-0.33	0.688082	0.885445
N	alternative_donor	SNHG5	chr6	-	chr6:86387907-86388411;chr6:86387907-86388415	chr6:86387907-86388120		chr6:86388121-86388411;chr6:86388412-86388415	chr6:86388411-86388412;chr6:86388415-86388416		15.79	6.33	8.51	5.56	8.05	2.02	6.82	27.27	23.68	8.51	8.00	2.70	28.57	NA	36.36	26.32	33.33	NA	2.86	15.00	8.51	11.32	7.94	9.26	6.98	40.00	20.83	12.90	11.11	9.09	18.00	13.51	3.23	12.50	14.00	11.11	6.58	18.00	11.43	0.050732	0.397730
N	jcn_only_AD	NTMT1	chr9	+	chr9:132396429-132397486;chr9:132396501-132397486	chr9:132396586-132397486		chr9:132396429-132396500;chr9:132396501-132396585	chr9:132396428-132396429;chr9:132396500-132396501		87.50	84.42	89.66	82.86	87.64	86.05	82.14	81.82	84.38	83.33	77.50	80.00	88.10	NA	84.62	83.72	75.51	NA	81.08	83.33	80.00	87.50	85.00	100.00	71.93	91.67	84.62	88.89	87.50	83.33	80.95	90.62	83.33	84.21	90.62	84.62	82.73	83.33	0.59	0.308402	0.657607
K	cassette	HSF1	chr8	+	chr8:145535931-145537196	chr8:145535931-145536313;chr8:145536398-145537196		chr8:145536314-145536397			4.76	2.38	3.33	8.70	4.26	11.76	13.04	29.41	13.04	19.23	12.12	21.43	15.38	12.50	20.69	25.00	18.18	NA	8.33	6.25	9.52	12.50	6.90	11.76	0.00	5.56	0.00	15.79	3.70	6.25	NA	5.88	4.00	5.00	8.33	13.04	6.17	6.25	0.08	0.423751	0.732127
N	jcn_only_AA	NCKAP1L,TMEM263	chr12	+	chr12:54922162-54925043	chr12:54922162-54923821		chr12:54923822-54925043	chr12:54925043-54925044		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	intron_retention		chr7	+	chr7:647615-647825				chr7:647614-647615;chr7:647825-647826		87.10	100.00	96.43	94.12	90.91	91.30	NA	90.80	87.80	86.05	83.33	85.42	80.00	86.79	100.00	75.00	83.33	88.46	100.00	100.00	86.67	100.00	100.00	93.75	54.55	92.16	91.43	92.00	100.00	88.10	90.00	88.00	100.00	94.12	NA	90.38	100.00	90.40	-9.60	0.985084	1.000000
K	cassette	CSNK1D	chr17	-	chr17:80207479-80209254	chr17:80207479-80207573;chr17:80208056-80209254		chr17:80207574-80208055			9.43	6.17	12.71	7.14	5.19	0.00	0.96	0.85	0.92	0.00	0.00	1.22	1.49	1.28	2.34	0.69	2.13	1.16	4.17	8.75	7.14	8.47	4.39	8.64	11.43	9.35	5.49	8.82	4.94	8.57	9.00	9.70	0.00	12.73	9.38	11.41	2.83	8.88	6.04	0.347295	0.709176
K	intron_retention	GPAA1	chr8	+	chr8:145140383-145140475				chr8:145140382-145140383;chr8:145140475-145140476		10.53	11.54	21.82	13.33	9.15	13.95	0.00	0.00	2.22	1.00	1.09	0.00	1.52	0.00	1.89	0.00	0.00	0.00	7.55	13.04	8.76	17.95	10.00	13.79	5.11	9.52	12.07	12.20	5.62	8.93	10.34	19.12	9.27	10.20	14.00	13.56	6.33	9.93	3.60	0.862507	1.000000
N	alternative_last_exon	SIRPA	chr20	+	chr20:62520592-62520734,chr20:62520592-62521324;chr20:62520592-62559687	chr20:62520592-62521202	chr20:62559688-62559805	chr20:62521203-62522898			99.36	100.00	100.00	98.46	98.60	94.12	100.00	99.45	100.00	99.38	99.56	98.36	99.82	99.58	99.09	98.78	98.63	96.67	99.29	99.24	97.74	99.47	99.54	99.00	99.84	98.38	99.26	98.31	98.78	100.00	99.61	99.27	97.77	98.03	99.79	97.50	99.83	99.41	-0.42	0.659125	0.787026
N	cassette	EIF3M	chr11	+	chr11:32605476-32610139;chr11:32605476-32611092	chr11:32605476-32608557;chr11:32608691-32610139,chr11:32608691-32611092		chr11:32608558-32608690			87.50	86.00	82.14	77.50	87.72	66.67	91.80	91.67	89.29	87.50	89.38	80.95	89.05	86.11	87.63	85.07	86.49	90.41	92.86	93.10	91.11	89.91	92.08	87.50	72.73	83.33	88.89	86.25	88.51	79.71	86.96	88.24	86.36	88.24	92.13	90.43	87.70	87.23	-0.48	0.634914	0.867338
K	jcn_only_AA	CORO7,CORO7-PAM16	chr16	-	chr16:4458199-4462356	chr16:4458253-4462356		chr16:4458199-4458252	chr16:4458198-4458199		97.62	100.00	100.00	NA	100.00	NA	100.00	97.53	97.37	100.00	100.00	96.30	98.82	98.72	100.00	98.31	100.00	100.00	NA	97.78	NA	100.00	98.08	96.43	100.00	98.18	100.00	95.83	97.14	93.33	100.00	95.45	NA	100.00	100.00	98.15	100.00	97.98	-2.02	0.020054	0.544869
N	jcn_only_AD	ANAPC2	chr9	-	chr9:140070290-140071500;chr9:140070290-140070454;chr9:140070290-140072519	chr9:140070290-140074632		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	NA	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	intron_retention		chr22	-	chr22:50965758-50966016				chr22:50965757-50965758;chr22:50966016-50966017		99.01	100.00	100.00	99.30	100.00	100.00	NA	92.06	95.83	100.00	84.62	90.48	91.67	95.28	96.83	95.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.70	100.00	96.15	98.61	99.07	100.00	100.00	100.00	100.00	100.00	100.00	99.04	-0.96	0.235253	1.000000
K	cassette	SEPP1	chr5	-	chr5:42808469-42811937	chr5:42808469-42810792;chr5:42810881-42811937		chr5:42810793-42810880			0.00	2.32	0.00	0.68	0.94	0.90	2.11	3.57	0.00	3.07	2.81	3.60	3.65	0.00	9.09	2.50	4.28	4.49	1.46	0.00	0.00	1.27	1.52	1.81	0.00	0.00	0.00	0.47	1.04	0.75	0.00	2.22	1.00	1.11	0.96	1.18	1.78	0.00	-1.78	0.169467	0.709176
K	jcn_only_AA	PTPN6	chr12	+	chr12:7060895-7061275;chr12:7060895-7061145;chr12:7060895-7061074	chr12:7060895-7061179		chr12:7061075-7061145;chr12:7061146-7061179;chr12:7061180-7061275	chr12:7061145-7061146;chr12:7061179-7061180;chr12:7061275-7061276		1.09	0.00	0.00	0.00	0.00	NA	1.50	0.00	0.00	2.10	0.99	0.00	2.24	1.70	3.57	1.44	1.91	6.25	0.00	3.28	0.00	0.00	3.05	0.00	0.00	0.74	3.45	2.08	1.61	NA	0.00	0.00	NA	2.24	2.01	4.65	0.00	0.92	0.92	0.589586	0.810863
K	alternative_acceptor	POLR2E	chr19	-	chr19:1088720-1089470;chr19:1086988-1089470	chr19:1088681-1089470		chr19:1086988-1088680;chr19:1088681-1088719	chr19:1086987-1086988;chr19:1088680-1088681		0.00	6.19	3.57	5.95	7.87	5.00	5.80	4.76	2.04	5.36	4.11	4.76	4.30	4.55	1.64	5.48	4.17	2.38	7.73	0.00	3.54	6.52	7.69	2.70	9.18	0.00	3.57	0.00	6.45	5.00	9.30	4.94	6.47	5.45	5.13	4.55	6.33	2.27	-4.05	0.077824	0.585944
K	cassette	PPP4C	chr16	+	chr16:30093856-30094714	chr16:30093856-30094066;chr16:30094285-30094714		chr16:30094067-30094284			97.44	100.00	93.75	95.45	97.96	100.00	91.89	94.59	93.75	81.08	91.89	91.30	93.88	89.47	86.49	86.36	83.33	79.17	100.00	100.00	94.59	100.00	98.33	100.00	93.75	92.68	91.49	87.88	90.38	90.91	97.67	96.36	89.19	93.18	97.56	89.80	93.81	96.02	2.20	0.830300	0.942757
K	alternative_last_exon	PDXDC1	chr16	+	chr16:15123914-15232735	chr16:15123914-15125591	chr16:15232736-15233196	chr16:15125592-15126836			43.75	11.11	47.62	NA	13.33	NA	55.56	50.00	38.89	50.00	45.00	46.15	68.00	NA	50.00	66.67	56.00	NA	9.09	45.45	NA	57.14	46.15	60.00	30.77	60.00	53.33	40.00	34.78	NA	NA	NA	NA	78.95	72.22	76.92	30.77	47.73	16.96	0.283583	0.491468
K	jcn_only_AA	DEF8	chr16	+	chr16:90021675-90023948;chr16:90021675-90023918	chr16:90021675-90023880		chr16:90023881-90023918;chr16:90023919-90023948	chr16:90023918-90023919;chr16:90023948-90023949		4.55	0.00	1.61	3.92	0.00	3.28	0.00	0.00	3.03	4.76	0.00	0.00	1.67	4.88	0.00	0.00	4.17	0.00	0.00	5.00	1.75	2.50	1.49	0.00	0.00	0.00	3.77	0.00	4.65	4.17	0.00	0.00	0.00	0.00	1.37	4.41	0.00	2.27	2.27	0.107372	0.663989
K	alternative_last_exon	RNASE4	chr14	+	chr14:21152918-21167513	chr14:21152918-21161705	chr14:21167514-21169374	chr14:21161706-21162345			54.90	75.00	46.88	50.00	50.00	46.67	55.00	65.38	72.22	36.84	40.00	41.18	57.14	64.71	60.00	45.45	57.14	NA	69.05	56.25	72.73	35.29	45.45	36.84	77.36	53.33	62.86	47.06	50.00	60.00	42.86	53.33	58.49	36.00	29.17	35.48	63.77	55.58	-8.19	0.112527	0.333781
K	intron_retention	HECTD3	chr1	-	chr1:45470479-45471465				chr1:45470478-45470479;chr1:45471465-45471466		4.00	0.00	7.89	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.90	0.00	0.00	12.82	5.88	0.00	2.63	11.11	0.00	3.33	0.00	5.88	11.43	0.00	8.11	7.69	9.38	0.00	3.31	3.31	0.427067	1.000000
K	intron_retention		chr16	+	chr16:1411957-1412038				chr16:1411956-1411957;chr16:1412038-1412039		4.68	2.96	2.75	1.56	2.21	0.00	0.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	1.38	3.21	1.61	2.52	3.39	2.33	4.43	1.35	2.53	1.29	0.97	0.62	6.15	5.44	3.87	2.38	2.67	1.86	2.17	2.28	0.11	0.938816	1.000000
K	intron_retention	HCLS1	chr3	-	chr3:121361829-121363664				chr3:121361828-121361829;chr3:121363664-121363665		6.75	3.30	12.58	6.12	4.40	0.00	0.47	0.71	0.00	0.72	0.44	0.00	0.73	1.04	1.93	0.70	0.42	0.00	5.97	7.14	3.01	6.02	4.19	7.10	0.00	4.88	4.23	0.67	1.62	0.68	1.71	2.45	1.43	2.27	1.99	1.43	1.08	3.29	2.21	0.887558	1.000000
K	jcn_only_AA	TRAPPC13	chr5	+	chr5:64957978-64960063	chr5:64957978-64960060		chr5:64960061-64960063	chr5:64960063-64960064		28.57	50.00	53.33	NA	40.00	30.00	36.36	54.55	50.00	NA	58.33	NA	40.00	NA	37.50	50.00	NA	NA	50.00	31.25	50.00	NA	26.67	NA	NA	31.58	38.89	NA	69.23	NA	40.00	43.33	38.89	33.33	40.00	30.77	40.00	31.58	-8.42	0.328854	0.663989
K	intron_retention		chr12	-	chr12:113830955-113831696				chr12:113830954-113830955;chr12:113831696-113831697		5.23	4.69	3.90	0.00	2.31	0.00	0.00	0.31	0.70	0.72	0.73	0.70	0.00	0.00	0.00	0.00	0.00	0.00	4.08	5.43	2.54	6.52	2.13	0.00	6.06	1.98	5.14	2.63	1.23	4.76	4.39	6.14	10.23	3.81	3.06	4.64	4.38	3.18	-1.20	0.716431	1.000000
K	intron_retention		chr19	+	chr19:35769978-35770069				chr19:35769977-35769978;chr19:35770069-35770070		4.48	5.73	7.06	7.91	10.10	7.38	3.24	6.11	5.98	4.78	4.06	4.02	3.90	4.44	5.45	6.03	5.39	4.11	5.11	5.77	4.88	10.11	9.44	6.41	7.17	6.25	4.94	7.14	8.27	5.23	6.41	5.59	4.78	5.13	6.23	5.05	4.95	5.94	0.99	0.991442	1.000000
N	intron_retention		chr19	-	chr19:36399210-36399364				chr19:36399209-36399210;chr19:36399364-36399365		80.00	65.62	88.89	NA	79.31	NA	84.38	93.10	100.00	85.71	89.47	85.71	81.48	91.18	100.00	95.45	96.55	86.67	73.33	82.35	73.33	NA	87.50	NA	NA	85.19	100.00	NA	84.62	90.91	72.22	61.11	70.00	77.78	100.00	76.92	73.33	83.77	10.44	0.305586	1.000000
K	intron_retention	EXOSC9	chr4	+	chr4:122737603-122737926				chr4:122737602-122737603;chr4:122737926-122737927		4.44	4.41	6.38	5.88	7.25	2.38	35.71	0.74	0.00	10.34	16.67	1.37	36.84	0.00	0.00	6.90	12.50	1.59	4.41	1.99	3.77	4.55	4.65	2.50	7.14	2.27	6.06	10.26	13.51	5.56	7.14	7.89	2.74	5.13	1.92	4.35	5.78	2.13	-3.65	0.837427	1.000000
K	jcn_only_AA	CD46	chr1	+	chr1:207958452-207959000	chr1:207958452-207958963		chr1:207958964-207959000	chr1:207959000-207959001		100.00	84.85	96.67	NA	NA	NA	97.01	100.00	100.00	100.00	97.50	94.78	96.10	100.00	97.18	96.61	95.28	97.22	NA	90.70	81.82	96.67	95.65	97.18	NA	100.00	96.12	93.10	95.83	90.48	100.00	89.06	100.00	95.06	98.53	96.43	96.56	100.00	3.44	0.336260	0.663989
K	cassette	PCBP2,RP11-793H13.8	chr12	+	chr12:53858637-53861004;chr12:53856352-53861004	chr12:53858637-53859715,chr12:53856352-53859715;chr12:53859758-53861004		chr12:53859716-53859757			80.60	87.45	80.92	80.95	84.10	85.42	89.47	85.48	88.11	87.70	87.68	86.08	88.11	85.44	87.74	83.70	87.96	87.01	91.51	77.42	90.07	77.72	84.44	79.55	93.67	86.67	89.53	84.12	89.42	83.66	84.83	86.81	85.00	80.26	81.98	81.72	88.79	85.13	-3.66	0.013744	0.367497
K	intron_retention		chr20	+	chr20:62514174-62520542				chr20:62514173-62514174;chr20:62520542-62520543		2.82	0.00	3.33	3.85	0.00	0.00	0.61	0.00	1.01	0.00	0.62	0.00	1.23	0.46	1.11	1.15	0.52	0.00	2.17	2.79	0.00	2.06	1.53	1.96	7.81	1.83	1.84	1.22	1.05	0.00	3.81	1.46	2.17	2.84	2.53	4.39	1.70	2.31	0.61	0.907864	1.000000
K	alternative_acceptor	KIAA0319L	chr1	-	chr1:35900683-35906647	chr1:35901199-35906647		chr1:35900683-35901198	chr1:35900682-35900683		12.20	15.38	5.56	NA	12.50	NA	0.00	4.00	1.49	NA	0.00	NA	4.00	4.76	5.26	8.33	5.56	NA	10.00	8.82	8.00	NA	13.79	NA	NA	12.77	14.29	NA	13.33	11.11	11.54	4.88	25.00	19.05	27.27	16.22	10.00	10.18	0.18	0.706392	0.890280
N	jcn_only_AD	FPGS	chr9	+	chr9:130566980-130570512;chr9:130570055-130570512	chr9:130569968-130570512					93.75	100.00	92.77	93.88	100.00	93.94	100.00	95.89	96.30	95.71	100.00	100.00	100.00	93.44	97.59	94.44	96.77	94.74	100.00	97.37	94.23	88.64	88.46	92.38	NA	91.11	85.71	94.92	88.89	95.38	100.00	89.06	81.82	90.00	92.86	93.85	100.00	94.82	-5.18	0.786261	0.899198
K	cassette	STK11	chr19	+	chr19:1207203-1218415	chr19:1207203-1216266;chr19:1216398-1218415		chr19:1216267-1216397			2.44	0.00	2.94	NA	3.70	NA	1.59	4.17	6.56	2.38	3.12	0.00	1.52	0.00	5.56	0.00	2.99	5.00	0.00	0.00	3.03	4.17	5.26	0.00	9.09	4.55	4.08	0.00	3.77	0.00	0.00	6.78	3.45	2.63	2.56	0.00	1.56	1.22	-0.34	0.661915	0.876335
K	cassette	PLEKHJ1	chr19	-	chr19:2234061-2235760	chr19:2234061-2234148;chr19:2234240-2235760		chr19:2234149-2234239			100.00	100.00	100.00	95.45	91.89	94.44	100.00	95.00	100.00	97.50	98.00	92.31	100.00	93.10	100.00	95.56	96.08	NA	92.00	100.00	100.00	93.75	94.29	100.00	100.00	100.00	100.00	100.00	95.24	92.31	100.00	95.24	100.00	100.00	96.30	85.71	100.00	100.00	0.00	0.732212	0.906297
K	jcn_only_AA	AD000671.6,IGFLR1	chr19	-	chr19:36230990-36231280;chr19:36230671-36231280	chr19:36230988-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		7.14	0.00	0.00	NA	0.00	NA	12.77	10.53	14.71	6.45	9.52	12.00	10.34	12.50	14.29	0.00	7.94	12.50	6.38	8.70	0.00	NA	11.11	0.00	9.38	21.74	9.52	21.05	23.64	10.26	11.54	10.53	17.50	11.11	5.56	10.34	9.86	11.04	1.18	0.430772	0.699533
K	cassette	TIMM8B	chr11	-	chr11:111956187-111957363	chr11:111956187-111956690;chr11:111957035-111957363		chr11:111956691-111957034			7.02	7.87	15.09	9.30	11.39	3.28	9.73	12.12	12.73	12.22	11.86	8.97	9.84	9.52	11.94	9.73	12.28	11.43	5.76	7.81	4.68	8.93	11.65	15.00	6.12	17.54	9.84	8.70	10.42	7.79	13.10	15.28	8.61	16.28	20.00	11.59	8.24	10.82	2.58	0.110741	0.708559
N	alternative_acceptor	HDGF	chr1	-	chr1:156714939-156715088;chr1:156714919-156715088	chr1:156714957-156715088		chr1:156714919-156714938;chr1:156714939-156714956	chr1:156714918-156714919;chr1:156714938-156714939		0.00	0.00	2.07	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	1.23	0.00	0.00	2.44	0.00	2.63	1.47	0.00	4.76	0.00	1.12	0.00	2.17	0.00	4.55	1.37	7.14	2.04	1.15	1.75	0.00	0.00	0.00	0.602555	0.848883
N	alternative_acceptor	DHPS	chr19	-	chr19:12786920-12787921;chr19:12786957-12787921	chr19:12786893-12787921		chr19:12786893-12786919;chr19:12786920-12786956	chr19:12786892-12786893;chr19:12786919-12786920		0.00	7.41	0.00	9.09	0.00	0.00	0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.363217	0.709013
N	alternative_acceptor	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2420049;chr7:2419147-2419918;chr7:2419147-2419815	chr7:2419147-2419838		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		45.45	56.10	45.71	52.41	54.14	52.56	50.00	NA	47.06	41.25	46.30	50.00	53.70	50.00	64.29	60.14	51.72	47.83	52.02	45.00	52.08	58.42	49.07	54.39	47.24	NA	71.43	52.50	46.94	56.18	37.93	55.88	47.13	52.05	60.76	53.12	51.01	45.23	-5.79	0.075779	0.585944
K	jcn_only_AD	C19orf43	chr19	-	chr19:12842236-12845149	chr19:12842236-12845126		chr19:12845127-12845149	chr19:12845149-12845150		95.69	100.00	95.14	100.00	96.40	100.00	95.97	97.27	95.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.90	97.96	100.00	100.00	96.79	100.00	96.91	100.00	96.09	95.92	100.00	100.00	95.65	97.39	100.00	95.52	94.38	100.00	98.45	97.61	-0.84	0.758268	0.875385
N	jcn_only_AA	SLC39A11	chr17	-	chr17:70721976-70732788;chr17:70645408-70732788;chr17:70725143-70732788;chr17:70691206-70732788	chr17:70709121-70732788		chr17:70645408-70691205;chr17:70691206-70709120;chr17:70709121-70721975;chr17:70721976-70725142	chr17:70645407-70645408;chr17:70691205-70691206;chr17:70709120-70709121;chr17:70721975-70721976		2.78	0.00	0.00	NA	0.00	NA	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.94	7.69	NA	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	5.88	4.76	0.00	6.45	0.00	1.39	1.39	0.717755	0.875250
K	intron_retention		chr10	+	chr10:104161917-104162011				chr10:104161916-104161917;chr10:104162011-104162012		4.43	4.92	3.85	2.77	2.07	2.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.58	1.09	0.55	0.00	0.00	4.17	3.66	2.21	4.23	4.27	4.44	2.70	3.28	4.38	4.74	4.05	2.84	6.19	5.22	4.31	4.67	3.87	3.13	3.44	3.47	0.03	0.992113	1.000000
K	intron_retention	DUSP3	chr17	-	chr17:41844153-41846949				chr17:41844152-41844153;chr17:41846949-41846950		93.18	92.11	83.33	90.00	91.18	100.00	93.62	100.00	87.76	97.17	94.67	98.08	95.38	100.00	100.00	92.41	95.52	95.92	86.36	95.65	90.91	100.00	97.78	96.97	64.29	89.66	93.75	96.43	91.18	96.43	89.47	100.00	100.00	94.12	100.00	96.23	92.87	94.42	1.55	0.477211	1.000000
K	intron_retention	PAF1	chr19	-	chr19:39880024-39880119				chr19:39880023-39880024;chr19:39880119-39880120		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	2.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	alternative_donor	GRINA	chr8	+	chr8:145064480-145065367;chr8:145065076-145065367	chr8:145064368-145065367		chr8:145064368-145064479;chr8:145064480-145065075	chr8:145064367-145064368;chr8:145064479-145064480		86.02	81.25	84.63	78.57	83.33	NA	91.53	88.55	85.94	90.56	91.54	89.04	89.19	87.17	85.40	92.51	90.76	88.22	NA	88.67	87.60	89.89	92.31	92.48	86.67	85.92	84.43	91.47	92.92	92.20	90.58	89.40	NA	88.68	89.61	87.61	87.93	87.86	-0.07	0.792254	0.924933
N	alternative_acceptor	AD000671.6,U2AF1L4	chr19	-	chr19:36235148-36235223;chr19:36235047-36235223	chr19:36235124-36235223		chr19:36235047-36235123;chr19:36235124-36235147	chr19:36235046-36235047;chr19:36235123-36235124		9.52	9.38	3.85	5.56	10.71	6.25	6.25	NA	4.55	NA	7.14	NA	7.14	NA	5.56	0.00	0.00	NA	7.41	0.00	2.78	9.09	6.67	7.14	16.00	8.33	2.94	5.00	8.33	5.26	0.00	4.17	6.67	5.26	11.11	4.17	7.28	4.17	-3.11	0.205976	0.669309
K	intron_retention	REXO1	chr19	-	chr19:1816154-1816223				chr19:1816153-1816154;chr19:1816223-1816224		20.00	5.00	20.83	15.00	9.09	NA	4.76	0.00	3.85	0.00	0.00	0.00	4.17	5.88	8.33	2.50	0.00	0.00	6.25	12.50	5.26	21.74	26.92	16.00	NA	7.69	6.90	4.55	11.54	3.70	33.33	31.43	20.00	13.64	11.76	9.52	5.00	10.10	5.10	0.638787	1.000000
N	alternative_acceptor	SLC26A11	chr17	+	chr17:78223087-78223980;chr17:78223087-78224971;chr17:78223087-78223764;chr17:78223087-78225127	chr17:78223087-78223974		chr17:78223765-78223974;chr17:78223975-78223980;chr17:78223981-78224971;chr17:78224972-78225127	chr17:78223974-78223975;chr17:78223980-78223981;chr17:78224971-78224972;chr17:78225127-78225128		2.17	0.00	0.00	0.00	1.54	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	3.45	0.00	0.00	4.30	0.00	9.52	0.00	0.00	0.00	1.54	0.00	2.08	0.00	0.00	2.50	5.77	1.19	0.00	2.08	2.08	0.979192	0.994572
N	intron_retention		chr16	+	chr16:28847812-28848071				chr16:28847811-28847812;chr16:28848071-28848072		100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	NA	96.77	100.00	100.00	100.00	94.29	NA	97.62	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.904476	1.000000
N	alternative_donor	PPIF	chr10	+	chr10:81107500-81108831	chr10:81107840-81108831		chr10:81107500-81107839	chr10:81107499-81107500		20.59	11.54	13.18	7.55	6.14	0.00	0.00	0.00	0.00	0.24	0.00	0.00	0.00	0.00	0.00	0.15	0.00	0.00	9.09	9.62	4.69	7.39	7.60	8.08	16.67	5.56	6.13	0.68	0.86	0.72	18.42	15.54	10.00	8.30	5.41	5.59	9.54	7.59	-1.96	0.805810	0.936181
K	jcn_only_AA	AD000671.6,IGFLR1	chr19	-	chr19:36230988-36231280;chr19:36230671-36231280	chr19:36230990-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		85.71	83.72	86.36	NA	87.50	NA	87.23	89.47	79.41	93.55	90.48	84.00	86.44	81.25	85.71	94.12	88.71	87.50	63.83	72.73	85.00	90.00	72.97	93.33	75.00	73.91	87.80	68.42	76.36	82.05	76.92	78.95	61.54	72.22	77.78	72.41	79.36	79.09	-0.27	0.512087	0.760908
N	alternative_donor	C11orf73	chr11	+	chr11:86048573-86055644;chr11:86048535-86055644	chr11:86055563-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	5.00	3.70	0.00	0.00	0.00	NA	0.00	0.00	5.88	4.00	5.26	0.00	0.00	0.00	0.373901	0.650093
K	alternative_acceptor	DCAF7	chr17	+	chr17:61666600-61671564	chr17:61666600-61668352		chr17:61668353-61671564	chr17:61671564-61671565		91.43	78.38	94.92	45.16	59.09	40.00	95.77	96.77	100.00	90.32	92.94	100.00	97.44	90.32	96.49	90.22	94.44	93.33	47.22	96.67	64.00	86.96	76.12	85.71	57.14	91.67	92.16	78.00	84.00	71.88	78.95	91.89	48.65	89.83	90.38	84.62	67.76	91.55	23.79	0.084570	0.585944
K	jcn_only_AA	FDXR	chr17	-	chr17:72862667-72862905	chr17:72862691-72862905		chr17:72862667-72862690	chr17:72862666-72862667		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	92.31	NA	91.67	NA	93.33	NA	100.00	NA	NA	NA	100.00	100.00	93.33	NA	NA	NA	95.00	87.50	95.35	NA	NA	NA	100.00	97.30	100.00	94.12	100.00	100.00	100.00	100.00	0.00	0.849190	0.939316
N	cassette	MARCH2	chr19	+	chr19:8486901-8503271;chr19:8486901-8495541	chr19:8486901-8491492;chr19:8491689-8495541,chr19:8491689-8503271		chr19:8491493-8491688			96.27	100.00	95.45	97.22	98.55	95.74	97.98	98.63	96.11	93.65	100.00	100.00	100.00	96.08	98.40	100.00	94.03	100.00	96.00	95.71	97.71	100.00	100.00	94.59	100.00	100.00	98.10	97.92	96.55	99.02	91.11	98.82	100.00	100.00	100.00	97.73	100.00	96.17	-3.83	0.095194	0.658707
K	jcn_only_AA	TCN2	chr22	+	chr22:31007051-31008871	chr22:31007051-31008859		chr22:31008860-31008871	chr22:31008871-31008872		100.00	96.15	100.00	NA	100.00	NA	89.84	93.63	100.00	100.00	93.24	92.31	93.16	92.17	100.00	94.38	100.00	100.00	NA	94.87	NA	94.44	98.36	100.00	100.00	94.66	94.00	95.65	96.43	97.18	100.00	100.00	100.00	95.65	94.12	96.46	96.15	94.77	-1.39	0.981217	0.993706
N	cassette	NAGK	chr2	+	chr2:71300725-71303733	chr2:71300725-71302684;chr2:71302741-71303733		chr2:71302685-71302740			88.80	88.06	87.50	96.97	95.05	100.00	100.00	98.63	98.73	97.18	98.56	100.00	100.00	97.99	100.00	97.83	100.00	100.00	91.23	93.33	94.81	100.00	97.06	96.97	100.00	96.03	100.00	95.24	100.00	97.81	80.65	100.00	85.61	90.16	95.70	91.30	95.62	94.68	-0.94	0.694182	0.887136
K	intron_retention		chr12	+	chr12:6497992-6499277				chr12:6497991-6497992;chr12:6499277-6499278		2.59	0.00	2.13	0.00	2.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.70	0.00	0.72	0.00	0.00	0.00	6.45	1.80	1.30	2.44	2.25	2.78	0.00	0.00	2.16	0.00	3.45	0.00	0.00	1.31	4.00	0.00	2.94	2.47	0.35	0.00	-0.35	0.808039	1.000000
N	coord_cassette	DRAM1	chr12	+	chr12:102295212-102313886	chr12:102295212-102301963;chr12:102302142-102307951;chr12:102308011-102313886		chr12:102301964-102302141;chr12:102307952-102308010			86.71	65.38	85.00	80.56	85.19	82.11	88.99	87.81	86.13	85.87	84.54	88.02	82.50	85.19	87.93	81.30	78.33	80.05	85.71	87.56	90.00	89.05	81.19	87.54	NA	83.02	82.63	86.51	87.50	87.66	89.11	86.86	85.19	85.53	86.22	85.83	85.19	87.13	1.94	0.300108	0.643829
N	alternative_donor	RBM6	chr3	+	chr3:50098981-50099394	chr3:50099182-50099394		chr3:50098981-50099181	chr3:50098980-50098981		4.76	35.71	18.60	NA	13.33	NA	10.00	NA	8.33	0.00	6.25	NA	17.65	18.18	20.00	NA	0.00	10.00	15.38	7.14	9.52	30.77	8.82	18.18	NA	30.00	21.21	16.67	13.04	33.33	13.64	13.89	19.05	23.81	23.33	33.33	17.65	13.64	-4.01	0.462110	0.719854
K	jcn_only_AA	BAG6	chr6	-	chr6:31612380-31612722	chr6:31612407-31612722		chr6:31612380-31612406	chr6:31612379-31612380		0.00	0.00	0.00	NA	9.09	NA	0.00	0.00	0.00	1.11	0.00	0.00	1.53	2.30	2.17	2.06	2.20	2.86	NA	0.00	0.00	2.86	0.00	1.82	0.00	0.00	1.85	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	2.25	0.00	0.00	0.00	0.878243	0.953570
N	cassette	INPPL1	chr11	+	chr11:71946496-71946889	chr11:71946496-71946718;chr11:71946798-71946889		chr11:71946719-71946797			98.08	100.00	96.72	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.83	NA	100.00	NA	90.32	100.00	100.00	100.00	98.00	100.00	100.00	100.00	0.00	0.275804	0.709176
K	intron_retention	C2CD2L	chr11	+	chr11:118984423-118984564				chr11:118984422-118984423;chr11:118984564-118984565		0.00	43.75	6.67	NA	NA	NA	0.00	0.00	0.00	0.00	5.00	NA	0.00	0.00	0.00	0.00	3.45	NA	NA	NA	NA	NA	9.09	NA	NA	0.00	7.69	NA	30.00	NA	NA	13.33	0.00	NA	13.33	NA	0.00	0.00	0.00	0.629122	1.000000
K	intron_retention	NECAP2	chr1	+	chr1:16785558-16785768				chr1:16785557-16785558;chr1:16785768-16785769		90.43	93.85	95.03	97.06	95.51	94.00	92.78	92.31	91.92	95.52	95.04	91.15	93.44	93.31	92.16	96.47	92.56	93.94	93.94	94.58	94.83	92.98	95.00	93.75	92.31	93.25	93.94	96.30	96.64	92.80	93.71	94.61	94.32	95.00	94.89	93.40	93.64	93.28	-0.36	0.848566	1.000000
K	alternative_acceptor	CDV3	chr3	+	chr3:133293960-133302848	chr3:133293960-133302845		chr3:133302846-133302848	chr3:133302848-133302849		84.62	66.67	86.36	77.78	80.00	73.08	87.21	86.52	90.62	87.13	86.61	89.93	86.96	86.76	88.89	82.98	80.70	83.61	NA	76.32	75.00	85.11	84.09	82.56	NA	91.18	90.00	80.00	82.93	82.00	71.88	78.12	92.31	73.44	84.09	83.12	87.08	85.57	-1.52	0.951903	0.990505
N	jcn_only_AA	ABHD17A	chr19	-	chr19:1880115-1885350	chr19:1881804-1885350					80.77	100.00	89.66	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.22	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.65	NA	100.00	95.24	86.96	87.50	94.64	100.00	87.50	83.33	88.46	100.00	100.00	100.00	100.00	95.24	-4.76	0.287302	0.663989
N	cassette	TSC22D4	chr7	-	chr7:100072064-100076416	chr7:100072064-100074899;chr7:100075931-100076416		chr7:100074900-100075930			90.09	95.95	89.13	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.59	100.00	100.00	100.00	100.00	100.00	100.00	93.33	91.67	91.25	92.73	93.33	93.55	100.00	100.00	96.77	91.36	100.00	95.92	96.88	90.14	83.53	84.21	100.00	92.86	96.30	97.97	94.01	-3.97	0.858372	0.951512
K	intron_retention	GPS2	chr17	-	chr17:7217041-7217224				chr17:7217040-7217041;chr17:7217224-7217225		16.22	21.69	21.69	16.67	20.34	9.38	5.45	1.64	0.00	2.86	3.45	4.35	0.00	5.56	6.25	2.56	4.62	0.00	11.11	18.64	15.52	29.41	26.87	17.78	12.82	12.70	17.72	22.50	21.31	18.37	12.66	17.24	8.33	20.00	20.97	21.59	9.72	12.68	2.96	0.916432	1.000000
N	alternative_donor	FAM160B2	chr8	+	chr8:21959363-21959685	chr8:21959574-21959685		chr8:21959363-21959573	chr8:21959362-21959363		21.05	26.67	14.29	NA	18.75	NA	0.00	0.00	0.00	9.09	0.00	NA	5.00	NA	3.57	0.00	0.00	10.00	NA	12.50	NA	NA	12.00	NA	40.00	13.33	18.75	0.00	10.00	16.67	NA	20.00	NA	9.52	9.52	6.45	15.84	12.91	-2.92	0.579029	0.799662
N	jcn_only_AA	ARHGEF2	chr1	-	chr1:155921322-155921531;chr1:155921325-155921531	chr1:155921374-155921531		chr1:155921322-155921324;chr1:155921325-155921373	chr1:155921321-155921322;chr1:155921324-155921325		0.00	11.11	0.00	0.00	0.00	NA	1.35	0.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.52	0.00	1.05	1.05	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.30	1.81	0.00	1.69	0.00	0.00	0.68	0.27	-0.41	0.441027	0.706196
K	intron_retention	SLC4A2	chr7	+	chr7:150771576-150771761				chr7:150771575-150771576;chr7:150771761-150771762		8.24	11.43	5.66	0.00	4.92	0.00	0.00	0.00	0.00	0.00	1.69	0.00	1.79	1.37	0.00	0.00	2.27	0.00	5.00	1.45	5.26	3.03	8.64	8.00	11.11	5.06	6.10	2.27	3.23	3.23	4.76	6.85	0.00	6.25	7.35	3.17	3.40	3.10	-0.29	0.984843	1.000000
K	intron_retention	EMC6	chr17	+	chr17:3572194-3572391				chr17:3572193-3572194;chr17:3572391-3572392		26.09	17.24	25.71	16.67	17.24	29.41	11.43	33.33	34.78	17.78	27.78	38.46	20.59	37.50	20.00	22.54	22.22	16.67	11.54	17.39	17.50	23.33	21.28	30.00	NA	40.00	18.52	14.81	17.65	25.81	28.00	30.77	16.67	19.05	15.79	28.21	16.67	30.66	13.99	0.106759	1.000000
K	alternative_acceptor	BRD2	chr6	+	chr6:32944714-32945218;chr6:32944714-32945036	chr6:32944714-32945193		chr6:32945037-32945193;chr6:32945194-32945218	chr6:32945193-32945194;chr6:32945218-32945219		0.60	1.92	2.53	6.67	6.06	NA	0.00	0.74	0.65	0.00	0.00	0.85	0.00	0.68	0.65	0.64	0.00	0.00	NA	1.20	0.00	3.47	2.99	0.49	NA	2.04	0.75	2.60	1.47	2.90	1.15	1.05	0.00	0.65	2.73	0.28	0.00	0.94	0.94	0.323725	0.709013
N	alternative_donor	CYTH4	chr22	+	chr22:37693724-37695266	chr22:37695064-37695266		chr22:37693724-37695063	chr22:37693723-37693724		4.20	18.75	5.86	NA	16.67	NA	0.68	0.89	0.51	1.12	0.72	0.55	1.07	0.60	1.57	1.41	1.47	1.23	41.18	2.07	15.56	5.26	5.61	2.94	38.64	2.49	3.37	5.95	7.23	10.39	2.94	3.12	36.84	6.06	2.63	4.10	27.80	2.28	-25.52	0.042963	0.375646
K	alternative_last_exon	PLAA	chr9	-	chr9:26906075-26910335	chr9:26907997-26910335	chr9:26904081-26906074	chr9:26907801-26907996			100.00	91.67	100.00	NA	92.86	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	90.00	100.00	94.44	100.00	95.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	91.67	100.00	8.33	0.072308	0.281549
K	intron_retention	ZMYND15	chr17	+	chr17:4648224-4648509				chr17:4648223-4648224;chr17:4648509-4648510		4.92	4.44	2.86	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	3.57	4.65	NA	0.00	NA	0.00	4.88	2.94	0.00	0.00	0.00	0.00	8.06	3.57	8.70	0.00	4.76	0.00	1.78	1.78	0.971273	1.000000
N	jcn_only_AA	FBXO18,LCOR	chr10	+	chr10:5978551-5979072	chr10:5978551-5979047		chr10:5979048-5979072	chr10:5979072-5979073		0.00	5.56	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	CAMK1	chr3	-	chr3:9799531-9801171				chr3:9799530-9799531;chr3:9801171-9801172		4.88	3.97	3.92	5.00	4.46	1.56	0.43	0.00	0.00	0.00	1.12	0.00	0.73	0.00	0.00	0.97	0.39	0.00	3.47	0.00	3.75	2.38	5.37	0.00	5.66	4.17	9.62	0.00	2.26	0.00	9.52	7.69	3.87	1.14	6.04	0.00	3.67	2.08	-1.58	0.908649	1.000000
K	intron_retention	MS4A6A	chr11	-	chr11:59945790-59947303				chr11:59945789-59945790;chr11:59947303-59947304		3.37	1.38	3.85	0.00	0.00	0.00	1.47	0.44	0.00	0.00	0.77	0.00	1.71	1.67	NA	0.00	0.00	0.00	4.26	3.23	NA	0.00	2.00	0.00	0.00	1.37	9.09	0.00	4.08	0.00	NA	5.56	5.00	0.00	2.74	0.00	1.59	1.67	0.08	0.991015	1.000000
N	cassette	CORO7,CORO7-PAM16	chr16	-	chr16:4407261-4408367;chr16:4407261-4409296	chr16:4407261-4407968;chr16:4408105-4408367,chr16:4408105-4409296		chr16:4407969-4408104			94.44	93.46	88.37	90.91	94.79	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	91.38	93.48	94.12	94.62	100.00	91.01	97.06	93.62	100.00	100.00	100.00	89.02	82.69	80.00	97.73	94.64	98.18	93.60	95.75	2.15	0.536157	0.809056
N	alternative_donor	TAOK2	chr16	+	chr16:30001969-30002104;chr16:30001919-30002104;chr16:30001127-30002104	chr16:30001923-30002104		chr16:30001127-30001918;chr16:30001919-30001922;chr16:30001923-30001968	chr16:30001126-30001127;chr16:30001918-30001919;chr16:30001922-30001923		4.55	4.00	10.71	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	NA	5.56	0.00	NA	9.09	NA	0.00	0.00	0.00	NA	6.25	NA	0.00	6.67	NA	6.25	7.69	6.25	0.00	2.27	2.27	0.428285	0.688660
K	intron_retention		chr19	+	chr19:7704694-7705616				chr19:7704693-7704694;chr19:7705616-7705617		1.95	3.57	4.55	0.00	4.88	NA	0.70	0.00	0.00	0.00	0.55	0.99	0.68	1.21	4.40	1.10	0.48	0.00	0.00	3.15	1.79	6.82	5.43	4.48	19.23	3.05	4.90	4.35	0.00	3.03	4.00	4.50	11.54	4.94	10.00	6.96	2.13	2.50	0.37	0.534601	1.000000
N	cassette	SFT2D2	chr1	+	chr1:168204421-168205949	chr1:168204421-168205826;chr1:168205863-168205949		chr1:168205827-168205862			100.00	100.00	92.86	100.00	100.00	100.00	93.10	100.00	91.30	86.96	82.35	93.33	86.67	100.00	97.06	90.91	82.35	93.88	100.00	100.00	100.00	NA	100.00	92.11	100.00	100.00	91.67	87.50	94.12	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.200629	0.709176
N	alternative_acceptor	PTTG1IP	chr21	-	chr21:46271543-46275124	chr21:46274892-46275124		chr21:46271543-46274891	chr21:46271542-46271543		0.73	0.00	0.96	0.00	0.00	0.00	0.38	0.00	0.34	0.00	0.00	0.00	0.27	0.00	0.42	0.40	0.22	0.00	0.00	0.42	0.00	0.74	0.30	0.52	7.14	0.74	0.83	0.96	0.00	0.00	0.00	0.36	0.00	0.64	1.27	0.87	0.14	0.21	0.07	0.441363	0.750964
N	alternative_first_exon	COMMD4	chr15	+	chr15:75628563-75630402;chr15:75628434-75630402	chr15:75628572-75630402	chr15:75628232-75628433	chr15:75628440-75628571			0.00	0.00	6.67	NA	0.00	NA	0.00	6.25	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.187311	0.394686
K	intron_retention		chr1	+	chr1:112018688-112019419				chr1:112018687-112018688;chr1:112019419-112019420		4.23	1.59	7.59	0.00	1.85	0.00	0.73	0.00	0.00	0.00	1.22	0.00	1.14	0.00	NA	0.00	0.73	0.00	0.00	2.22	0.00	0.00	7.23	0.00	0.00	0.00	5.38	0.00	5.88	0.00	0.00	4.11	0.00	0.00	4.92	0.00	0.36	0.00	-0.36	0.967053	1.000000
N	alternative_donor	ATP5D	chr19	+	chr19:1241991-1242454	chr19:1242358-1242454		chr19:1241991-1242357	chr19:1241990-1241991		3.12	3.00	12.50	8.33	7.14	2.86	0.75	0.00	0.00	1.72	0.93	0.00	0.74	6.67	3.12	1.37	2.00	0.00	2.73	5.00	2.44	9.52	4.04	5.88	2.46	20.00	5.41	5.41	6.82	4.35	6.25	10.53	2.70	3.03	5.41	4.17	2.58	5.62	3.04	0.151541	0.563271
N	jcn_only_AA		chr7	+	chr7:150501561-150501919;chr7:150501561-150501703	chr7:150501561-150501914		chr7:150501704-150501914;chr7:150501915-150501919	chr7:150501914-150501915;chr7:150501919-150501920		99.07	100.00	100.00	100.00	100.00	100.00	98.61	97.87	96.40	93.44	100.00	96.49	100.00	98.54	97.35	98.15	97.32	100.00	100.00	98.90	98.79	100.00	100.00	99.46	100.00	98.59	99.08	100.00	100.00	100.00	99.26	99.11	99.51	98.61	100.00	100.00	100.00	98.75	-1.25	0.009480	0.482846
K	cassette	BTF3L4	chr1	+	chr1:52522052-52530496	chr1:52522052-52525506;chr1:52525574-52530496		chr1:52525507-52525573			92.31	100.00	89.58	NA	95.00	NA	93.90	90.70	92.98	93.62	93.06	81.25	92.45	97.37	95.12	94.05	94.12	96.15	76.92	100.00	100.00	88.46	91.43	83.33	NA	90.91	92.11	92.59	92.11	95.00	73.33	90.91	75.00	82.14	94.59	88.00	92.45	91.61	-0.84	0.631366	0.866790
K	cassette	IDS	chrX	-	chrX:148571972-148577876	chrX:148571972-148573068;chrX:148573199-148577876		chrX:148573069-148573198			1.75	0.00	6.96	4.08	3.15	4.29	2.94	8.00	8.89	1.92	4.85	4.65	5.88	12.73	15.62	5.17	5.83	2.56	1.05	6.67	3.57	3.45	4.55	6.25	0.00	7.69	6.41	7.14	2.86	8.33	4.17	3.70	2.88	8.00	7.41	4.17	1.96	7.18	5.21	0.028929	0.426840
N	cassette	STAB1	chr3	+	chr3:52549523-52550371	chr3:52549523-52550058;chr3:52550255-52550371		chr3:52550059-52550254			100.00	87.43	95.70	100.00	95.18	96.15	100.00	100.00	100.00	100.00	100.00	100.00	99.77	100.00	100.00	100.00	100.00	99.86	93.75	94.19	100.00	92.86	92.21	92.93	93.05	97.98	98.26	100.00	98.43	99.22	100.00	100.00	89.89	93.80	93.53	94.23	93.40	100.00	6.60	0.078871	0.641134
N	jcn_only_AA	PLA2G4C	chr19	-	chr19:48565452-48571047;chr19:48568294-48571047	chr19:48565410-48571047		chr19:48565410-48565451;chr19:48565452-48568293	chr19:48565409-48565410;chr19:48565451-48565452		100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	96.67	96.97	90.00	90.32	88.89	100.00	95.00	95.24	100.00	100.00	86.96	95.24	93.33	100.00	97.14	94.87	96.67	100.00	98.34	-1.66	0.081642	0.663989
N	jcn_only_AD	GLRX	chr5	-	chr5:95152331-95157889;chr5:95152331-95157913	chr5:95152331-95158159		chr5:95157890-95157913;chr5:95157914-95158159	chr5:95157913-95157914;chr5:95158159-95158160		95.26	100.00	95.45	97.56	94.83	100.00	100.00	99.57	97.69	96.28	98.11	98.55	100.00	98.24	98.47	97.99	99.41	98.79	100.00	94.71	97.67	100.00	94.93	97.97	100.00	96.88	98.49	97.96	98.22	98.44	98.13	97.58	99.14	95.96	97.49	97.08	100.00	97.50	-2.50	0.015526	0.291610
N	alternative_acceptor		chr8	+	chr8:17882963-17883056	chr8:17882963-17883052		chr8:17883053-17883056	chr8:17883056-17883057		100.00	96.30	100.00	100.00	96.61	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	91.67	100.00	NA	94.29	NA	98.81	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	0.00	0.594464	0.844606
N	coord_cassette	CD47	chr3	-	chr3:107766140-107776323	chr3:107766140-107768465;chr3:107768499-107769424;chr3:107769450-107776323		chr3:107768466-107768498;chr3:107769425-107769449			10.00	25.00	NA	NA	NA	36.36	NA	3.33	0.00	NA	NA	NA	9.09	3.70	0.00	NA	16.67	9.09	11.76	8.33	6.25	NA	NA	NA	NA	2.50	5.00	NA	NA	12.50	4.35	7.14	12.50	NA	NA	7.69	12.13	4.03	-8.10	0.074485	0.643829
N	alternative_donor	STT3B	chr3	+	chr3:31670900-31674426	chr3:31670904-31674426		chr3:31670900-31670903	chr3:31670899-31670900		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	alternative_acceptor	RPS25	chr11	-	chr11:118888256-118888667;chr11:118888510-118888667	chr11:118888144-118888667		chr11:118888144-118888255;chr11:118888256-118888509	chr11:118888143-118888144;chr11:118888255-118888256		7.51	5.36	3.67	4.23	4.57	6.94	3.33	2.13	2.66	3.69	3.81	4.95	2.73	3.78	2.32	2.85	4.32	3.82	9.15	7.58	7.92	5.13	8.08	6.83	5.48	4.12	3.34	5.58	5.85	5.79	5.80	6.77	8.18	4.01	4.68	4.64	5.42	4.96	-0.46	0.696624	0.885862
N	cassette	FDPS	chr1	+	chr1:155289480-155290199	chr1:155289480-155289584;chr1:155289720-155290199		chr1:155289585-155289719			100.00	100.00	100.00	100.00	100.00	100.00	99.10	100.00	94.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	CSNK1A1	chr5	-	chr5:148876424-148885009;chr5:148876424-148878532;chr5:148876424-148885045	chr5:148876424-148884243		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		1.11	0.00	6.61	0.00	1.79	3.03	1.25	0.88	0.78	2.40	1.56	0.00	0.88	0.98	0.93	1.80	3.25	2.78	0.00	5.56	0.00	3.45	4.12	5.33	0.00	2.97	3.16	1.89	3.41	0.00	4.44	4.55	0.00	5.65	4.50	4.27	0.00	2.04	2.04	0.036451	0.352241
N	cassette	MINOS1,MINOS1-NBL1	chr1	+	chr1:19923604-19949967;chr1:19927466-19949967	chr1:19927466-19948593,chr1:19923604-19948593;chr1:19948642-19949967		chr1:19948594-19948641			90.00	92.36	90.34	95.08	95.40	93.96	95.76	94.87	97.56	96.83	97.78	97.12	97.08	96.77	96.12	96.11	94.50	96.50	93.69	90.43	95.49	94.58	94.29	94.53	95.38	94.64	93.18	94.18	96.85	97.11	91.67	92.91	93.83	95.52	97.00	94.65	94.60	93.16	-1.45	0.253114	0.709176
K	intron_retention	TFIP11	chr22	-	chr22:26890906-26892038				chr22:26890905-26890906;chr22:26892038-26892039		0.00	4.88	5.26	0.00	2.04	0.00	3.33	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	1.92	6.67	0.00	0.00	3.03	0.00	3.70	4.08	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	10.34	2.50	3.64	2.00	1.67	0.00	-1.67	0.463180	1.000000
K	intron_retention	ACO2	chr22	+	chr22:41923425-41923904				chr22:41923424-41923425;chr22:41923904-41923905		1.20	2.05	1.28	0.00	1.30	0.00	3.05	0.00	8.00	3.79	4.05	0.83	2.76	0.00	4.62	9.42	3.81	0.00	0.63	0.00	0.60	2.86	2.19	1.11	0.00	0.00	4.35	1.22	2.13	0.99	0.00	1.02	0.00	0.72	1.33	0.59	1.34	0.00	-1.34	0.294421	1.000000
N	jcn_only_AA	GET4,SUN1	chr7	+	chr7:926288-927006	chr7:926288-926988		chr7:926989-927006	chr7:927006-927007		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention		chr19	-	chr19:2046468-2046602				chr19:2046467-2046468;chr19:2046602-2046603		17.74	24.32	21.43	NA	25.00	NA	11.90	13.64	12.05	8.82	12.28	7.41	10.45	8.33	10.42	27.27	11.54	8.33	NA	13.46	5.56	18.75	30.00	11.76	33.33	19.57	12.99	NA	17.65	NA	11.43	14.04	23.81	10.34	16.22	13.89	23.81	13.55	-10.26	0.493948	1.000000
N	alternative_acceptor	TMEM179B	chr11	+	chr11:62555000-62556481;chr11:62555000-62556658;chr11:62555000-62556494;chr11:62555000-62556597	chr11:62555000-62556573		chr11:62556482-62556494;chr11:62556495-62556573;chr11:62556574-62556597;chr11:62556598-62556658	chr11:62556494-62556495;chr11:62556573-62556574;chr11:62556597-62556598;chr11:62556658-62556659		0.00	0.00	1.79	0.00	0.00	NA	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	5.26	0.00	0.00	0.00	0.00	2.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
K	intron_retention	QARS	chr3	-	chr3:49135551-49135624				chr3:49135550-49135551;chr3:49135624-49135625		6.06	4.35	3.80	1.22	2.33	1.49	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	5.13	3.16	6.45	3.09	6.06	2.17	3.03	1.08	0.00	2.11	2.67	5.17	5.66	4.09	3.39	0.00	4.35	2.25	4.08	1.83	0.691652	1.000000
K	intron_retention		chr1	+	chr1:151139891-151140619				chr1:151139890-151139891;chr1:151140619-151140620		7.58	8.39	15.87	8.57	7.92	6.17	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	5.08	0.00	0.00	9.49	9.26	8.65	13.04	6.33	12.50	5.00	3.17	7.55	5.26	7.04	5.71	7.35	14.61	8.05	5.00	10.17	8.93	6.53	5.26	-1.27	0.854707	1.000000
K	jcn_only_AD	NDUFB10	chr16	+	chr16:2011260-2011497	chr16:2011293-2011497		chr16:2011260-2011292	chr16:2011259-2011260		100.00	98.26	98.13	96.77	98.18	97.89	98.45	94.74	97.14	97.37	98.19	98.08	97.24	100.00	100.00	97.25	98.32	97.59	97.96	97.92	97.70	100.00	98.28	100.00	100.00	100.00	97.80	97.62	97.86	100.00	100.00	99.06	98.17	100.00	100.00	96.77	98.22	100.00	1.78	0.665557	0.828412
N	jcn_only_AD	FLYWCH1	chr16	+	chr16:2988458-2990032	chr16:2989880-2990032		chr16:2988458-2989879	chr16:2988457-2988458		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	8.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.657607
K	alternative_first_exon	TBCB	chr19	+	chr19:36606728-36606942;chr19:36606577-36606942	chr19:36606831-36606942	chr19:36605888-36606576	chr19:36606740-36606830			5.56	0.00	0.00	NA	0.00	NA	0.00	3.33	5.88	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	5.88	0.00	7.41	0.00	0.00	4.00	NA	3.45	5.13	0.00	2.70	6.67	0.00	6.67	0.00	0.00	0.00	0.00	0.00	1.67	1.67	0.579654	0.694025
K	jcn_only_AD	CARS,FIBP	chr11	-	chr11:65651515-65651862	chr11:65651515-65651781		chr11:65651782-65651862	chr11:65651862-65651863		5.88	0.00	2.86	3.23	3.66	3.30	0.00	0.00	6.06	0.00	0.00	0.00	0.00	4.55	3.12	0.00	2.22	0.00	1.55	0.00	4.88	NA	0.00	7.14	0.00	0.00	0.00	0.00	2.13	0.00	4.76	0.00	3.10	0.00	7.69	0.00	0.00	2.27	2.27	0.206793	0.657607
N	jcn_only_AA	ISY1,ISY1-RAB43	chr3	-	chr3:128859325-128864603	chr3:128859329-128864603		chr3:128859325-128859328	chr3:128859324-128859325		100.00	100.00	100.00	NA	100.00	NA	97.78	100.00	100.00	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.30	100.00	100.00	NA	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.753970	0.890220
N	jcn_only_AD	ZBTB8OS	chr1	-	chr1:33100394-33116002;chr1:33100394-33116385;chr1:33100394-33116025;chr1:33100394-33102842;chr1:33100394-33116029	chr1:33100394-33116033		chr1:33102843-33116002;chr1:33116003-33116025;chr1:33116026-33116029;chr1:33116030-33116033;chr1:33116034-33116385	chr1:33116002-33116003;chr1:33116025-33116026;chr1:33116029-33116030;chr1:33116033-33116034;chr1:33116385-33116386		92.31	84.31	95.24	90.91	88.89	89.29	81.82	90.48	89.13	80.39	73.85	94.59	86.96	88.46	88.46	89.36	90.41	87.18	90.70	89.66	77.97	81.82	84.21	84.21	86.67	85.19	85.37	88.89	80.00	87.50	86.21	81.40	77.78	87.88	96.97	88.57	85.49	89.06	3.57	0.096725	0.639657
N	alternative_acceptor	PI4KA	chr22	-	chr22:21067260-21067568;chr22:21067086-21067568	chr22:21067284-21067568		chr22:21067086-21067259;chr22:21067260-21067283	chr22:21067085-21067086;chr22:21067259-21067260		6.67	0.00	5.88	NA	0.00	NA	0.00	0.00	NA	0.00	2.63	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.06	0.00	NA	0.00	5.88	0.00	0.00	0.00	0.00	5.26	7.69	3.85	6.45	0.00	0.00	0.00	0.00	0.810389	0.932426
K	intron_retention	EIF4A2	chr3	+	chr3:186505054-186505283				chr3:186505053-186505054;chr3:186505283-186505284		4.37	0.00	2.86	0.00	0.00	0.00	0.78	0.69	0.35	2.30	0.88	0.00	1.79	1.82	1.17	2.50	4.31	0.00	0.00	3.43	1.11	5.03	3.21	7.10	0.00	2.90	1.07	2.53	3.26	2.99	2.97	3.37	1.64	5.29	4.37	3.24	0.39	2.94	2.54	0.221647	1.000000
N	jcn_only_AD	CHMP4A	chr14	-	chr14:24681036-24681971;chr14:24681036-24681756;chr14:24681036-24682229;chr14:24681036-24683199	chr14:24681036-24682614		chr14:24681757-24681971;chr14:24681972-24682229;chr14:24682230-24682614;chr14:24682615-24683199	chr14:24681971-24681972;chr14:24682229-24682230;chr14:24682614-24682615;chr14:24683199-24683200		97.96	100.00	98.46	100.00	93.48	100.00	98.59	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	96.83	100.00	97.56	100.00	100.00	93.75	100.00	100.00	96.39	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.491681	0.735763
K	cassette	SUMF2	chr7	+	chr7:56140805-56142278;chr7:56140805-56145794;chr7:56140805-56144526	chr7:56140805-56141866;chr7:56141912-56145794,chr7:56141912-56142278,chr7:56141912-56144526		chr7:56141867-56141911			88.57	90.22	84.62	100.00	90.91	NA	92.47	93.33	86.92	89.53	87.50	93.75	93.72	93.55	83.20	93.81	91.67	90.14	84.38	80.65	82.86	88.10	89.36	89.55	100.00	84.00	87.50	93.62	89.86	94.12	84.62	86.79	91.89	91.14	89.90	87.76	92.18	86.59	-5.59	0.149761	0.709176
K	intron_retention		chr16	-	chr16:4511961-4513660				chr16:4511960-4511961;chr16:4513660-4513661		9.68	4.76	8.70	4.55	4.08	0.00	7.14	0.00	0.00	0.00	5.88	0.00	3.33	8.33	7.69	7.14	6.25	NA	4.67	0.00	4.69	NA	6.90	NA	2.84	6.25	6.67	NA	3.57	7.69	6.67	9.30	5.26	7.69	14.81	0.00	4.71	6.46	1.75	0.607497	1.000000
K	intron_retention	HNRNPA3	chr2	+	chr2:178084043-178084135				chr2:178084042-178084043;chr2:178084135-178084136		4.58	0.87	3.77	0.00	0.79	0.00	0.00	0.00	0.34	0.32	0.30	0.73	0.77	0.00	0.56	0.20	0.00	0.35	1.36	3.15	0.71	3.59	1.54	4.44	0.00	0.00	4.29	1.26	0.84	1.13	9.38	6.25	2.86	3.35	4.28	3.86	0.82	1.57	0.75	0.504424	1.000000
N	jcn_only_AA		chr22	+	chr22:37678630-37678904;chr22:37678630-37683264;chr22:37678630-37688642;chr22:37678630-37680038	chr22:37678630-37688661		chr22:37678905-37680038;chr22:37680039-37683264;chr22:37683265-37688642;chr22:37688643-37688661	chr22:37680038-37680039;chr22:37683264-37683265;chr22:37688642-37688643;chr22:37688661-37688662		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	99.44	100.00	100.00	97.97	98.53	99.44	99.34	100.00	100.00	100.00	NA	98.85	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	0.00	0.360549	0.663989
K	jcn_only_AA	TCEAL3	chrX	+	chrX:102863602-102863970	chrX:102863602-102863965		chrX:102863966-102863970	chrX:102863970-102863971		90.70	100.00	95.24	92.31	86.96	NA	85.71	86.00	93.55	88.46	91.38	NA	95.24	95.83	100.00	97.37	91.58	95.45	100.00	87.88	92.11	94.74	91.11	81.25	100.00	95.56	94.83	93.33	93.94	84.21	85.19	93.02	100.00	89.74	93.65	88.46	100.00	89.29	-10.71	0.054512	0.663989
K	cassette	SNRNP70	chr19	+	chr19:49604729-49607890	chr19:49604729-49605370;chr19:49605431-49607890		chr19:49605371-49605430			8.05	11.46	17.65	6.06	6.73	3.90	2.00	2.08	1.15	1.87	1.71	0.00	2.27	2.50	5.88	3.91	2.21	1.32	5.60	9.52	6.90	22.22	19.81	17.65	6.80	4.41	7.69	17.39	10.91	3.90	14.29	17.95	5.37	23.40	20.88	18.80	5.48	6.23	0.75	0.620443	0.862352
N	jcn_only_AD	PLD2	chr17	+	chr17:4721640-4721788;chr17:4721681-4721788;chr17:4721686-4721788	chr17:4721702-4721788		chr17:4721640-4721680;chr17:4721681-4721685;chr17:4721686-4721701	chr17:4721639-4721640;chr17:4721680-4721681;chr17:4721685-4721686		0.00	0.00	5.08	NA	11.76	NA	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	13.64	0.00	NA	6.90	NA	NA	0.00	6.38	0.00	8.33	0.00	11.11	6.56	0.00	0.00	12.12	4.35	0.00	2.00	2.00	0.113577	0.646283
K	intron_retention	TMEM50B	chr21	-	chr21:34805110-34809189				chr21:34805109-34805110;chr21:34809189-34809190		92.84	70.59	88.69	90.58	86.73	83.42	100.00	98.66	96.89	100.00	98.65	97.30	100.00	100.00	95.52	100.00	100.00	100.00	71.43	95.44	88.17	94.21	95.07	95.74	50.57	95.90	88.47	94.74	95.99	95.83	91.76	83.09	61.79	92.25	95.72	94.98	71.01	95.67	24.66	0.118812	1.000000
K	intron_retention	CTC-250I14.3	chr19	-	chr19:13250762-13251834				chr19:13250761-13250762;chr19:13251834-13251835		90.24	100.00	100.00	90.91	94.74	90.91	91.30	100.00	100.00	90.70	95.65	100.00	100.00	96.30	92.59	100.00	100.00	100.00	90.38	100.00	98.31	100.00	93.48	NA	80.95	97.44	100.00	100.00	92.68	100.00	100.00	100.00	91.53	100.00	100.00	100.00	91.41	98.72	7.31	0.568329	1.000000
K	intron_retention	CCAR2	chr8	+	chr8:22476242-22476339				chr8:22476241-22476242;chr8:22476339-22476340		0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	2.22	0.00	0.00	4.44	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	2.27	0.00	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.956570	1.000000
N	cassette	AC002116.8,ALKBH6	chr19	-	chr19:36502367-36504245;chr19:36501948-36504245	chr19:36502367-36503922,chr19:36501948-36503922;chr19:36503992-36504245		chr19:36503923-36503991			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.44	100.00	100.00	NA	NA	95.24	100.00	NA	100.00	NA	NA	100.00	89.66	NA	100.00	NA	100.00	97.06	87.50	100.00	100.00	100.00	100.00	100.00	0.00	0.516266	0.794120
N	intron_retention		chr22	-	chr22:50965168-50965326				chr22:50965167-50965168;chr22:50965326-50965327		97.89	100.00	98.48	98.84	98.00	99.49	NA	100.00	88.89	NA	NA	NA	50.00	96.30	93.75	68.18	69.23	NA	96.85	97.31	96.13	100.00	97.37	100.00	96.79	97.33	98.19	100.00	95.83	98.37	96.82	98.24	96.18	100.00	97.85	98.96	96.79	97.32	0.53	0.590091	1.000000
N	jcn_only_AA	TYK2	chr19	-	chr19:10472513-10472753;chr19:10472614-10472753	chr19:10472632-10472753		chr19:10472513-10472613;chr19:10472614-10472631	chr19:10472512-10472513;chr19:10472613-10472614		92.86	82.61	94.62	NA	100.00	NA	100.00	100.00	98.25	100.00	100.00	100.00	98.08	100.00	95.83	95.83	94.29	100.00	NA	92.50	93.75	100.00	90.70	80.00	100.00	94.87	94.81	88.24	95.24	90.00	100.00	82.54	NA	90.48	93.22	94.29	99.04	97.44	-1.60	0.750147	0.887739
K	jcn_only_AD	GMPR2	chr14	+	chr14:24705248-24706276	chr14:24705347-24706276		chr14:24705248-24705346	chr14:24705247-24705248		100.00	100.00	97.67	NA	100.00	NA	100.00	97.87	95.24	100.00	100.00	100.00	98.77	97.62	100.00	100.00	98.46	100.00	NA	92.86	100.00	NA	100.00	100.00	100.00	97.22	100.00	NA	97.37	NA	100.00	97.62	100.00	91.67	95.00	90.48	100.00	97.75	-2.25	0.100424	0.639657
K	alternative_acceptor	HCST,HMG20B	chr19	+	chr19:36394806-36395024	chr19:36394806-36395021		chr19:36395022-36395024	chr19:36395024-36395025		51.37	53.97	66.67	52.21	53.71	50.73	55.90	51.76	50.00	52.55	55.61	58.55	55.00	48.98	58.33	53.28	54.87	48.91	56.86	58.49	59.63	53.80	53.75	59.61	56.70	53.62	53.49	57.65	53.87	54.46	56.43	54.39	55.92	51.61	52.54	53.27	55.91	52.69	-3.22	0.178852	0.660713
K	jcn_only_AA	HSF1	chr8	+	chr8:145515557-145532591	chr8:145515557-145516164					0.00	NA	0.00	NA	0.00	NA	0.00	2.78	0.00	3.70	0.00	0.00	3.64	0.00	7.41	5.56	5.56	0.00	NA	0.00	21.43	6.25	7.89	0.00	0.00	0.00	0.00	8.70	8.00	NA	NA	9.09	0.00	4.35	0.00	11.11	0.00	0.00	0.00	0.753077	0.889637
N	alternative_acceptor		chr16	+	chr16:29994223-29994371;chr16:29994223-29994374	chr16:29994223-29994392		chr16:29994372-29994374;chr16:29994375-29994392	chr16:29994374-29994375;chr16:29994392-29994393		100.00	100.00	96.67	NA	NA	NA	100.00	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	96.88	98.11	100.00	NA	100.00	NA	NA	100.00	NA	100.00	94.74	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	96.15	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	ELOVL1	chr1	-	chr1:43830132-43830228;chr1:43830132-43830212;chr1:43830132-43830289	chr1:43830132-43830285		chr1:43830213-43830228;chr1:43830229-43830285;chr1:43830286-43830289	chr1:43830228-43830229;chr1:43830285-43830286;chr1:43830289-43830290		0.00	0.00	4.55	NA	3.70	NA	0.00	0.00	0.00	0.00	2.94	NA	6.67	0.00	0.00	0.00	2.63	NA	NA	0.00	8.70	4.76	3.45	0.00	NA	0.00	0.00	0.00	0.00	0.00	11.11	2.33	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.942938	0.984606
N	coord_cassette	CMAS	chr12	+	chr12:22213861-22218054	chr12:22213861-22214214;chr12:22214387-22215214;chr12:22215369-22218054		chr12:22214215-22214386;chr12:22215215-22215368			92.31	92.86	100.00	NA	100.00	NA	100.00	100.00	97.30	100.00	100.00	100.00	100.00	97.37	97.37	100.00	97.62	100.00	86.67	100.00	100.00	100.00	94.12	100.00	100.00	100.00	93.62	100.00	100.00	100.00	84.38	91.49	100.00	91.18	94.23	91.67	100.00	98.69	-1.31	0.796918	0.909956
K	jcn_only_AA	CR1L,TMEM51	chr1	+	chr1:15541928-15545825	chr1:15541928-15545821		chr1:15545822-15545825	chr1:15545825-15545826		92.08	95.83	95.06	100.00	94.21	93.75	92.75	88.52	95.65	91.23	91.18	91.33	93.18	100.00	100.00	91.60	91.80	93.28	80.00	100.00	91.43	90.57	93.64	91.30	100.00	100.00	97.14	95.00	92.41	91.07	93.88	95.24	95.83	89.23	93.75	90.43	94.50	96.94	2.44	0.435583	0.704267
K	alternative_acceptor	BAP1	chr3	-	chr3:52436888-52437153	chr3:52436957-52437153		chr3:52436888-52436956	chr3:52436887-52436888		8.33	3.33	4.65	NA	14.29	NA	4.44	5.56	5.56	5.56	6.25	7.14	6.12	6.06	2.08	10.26	7.69	5.00	9.09	7.14	5.56	8.33	9.68	4.35	NA	3.57	8.11	5.88	8.70	4.00	9.52	9.80	NA	6.06	7.14	10.26	5.28	6.60	1.32	0.555756	0.826636
N	cassette	CTSC	chr11	-	chr11:88059612-88068104;chr11:88045723-88068104;chr11:88059568-88068104	chr11:88059612-88061279,chr11:88045723-88061279,chr11:88059568-88061279;chr11:88061365-88068104		chr11:88061280-88061364			16.67	60.00	9.33	53.57	52.29	100.00	15.42	15.74	13.55	9.03	12.43	6.03	18.39	13.97	22.83	12.81	14.31	5.21	84.89	18.31	66.67	15.65	18.47	6.81	95.68	13.41	20.31	27.14	37.11	22.73	13.33	11.83	81.25	4.29	6.12	1.42	70.62	14.86	-55.77	0.026826	0.412736
K	cassette	ANKRD13D	chr11	+	chr11:67057022-67057548	chr11:67057022-67057299;chr11:67057437-67057548		chr11:67057300-67057436			23.08	26.32	25.00	NA	NA	NA	22.73	28.57	18.75	NA	16.67	NA	17.65	11.76	0.00	NA	10.00	NA	NA	26.67	NA	NA	15.00	NA	6.67	20.00	20.00	NA	NA	NA	NA	16.13	10.00	NA	26.67	NA	17.65	23.08	5.43	0.294436	0.709176
K	intron_retention	STUB1	chr16	+	chr16:731604-731792				chr16:731603-731604;chr16:731792-731793		16.39	32.20	13.64	26.80	22.01	40.43	14.15	8.57	11.36	10.98	16.07	22.45	14.29	6.90	8.16	16.22	17.14	19.44	27.41	6.82	16.79	15.79	12.62	18.75	24.90	14.81	8.70	9.52	13.41	23.53	18.18	13.98	29.09	17.24	17.11	19.70	26.16	11.69	-14.46	0.464475	1.000000
K	cassette	AP2A2	chr11	+	chr11:994246-1003721	chr11:994246-1000431;chr11:1000599-1003721		chr11:1000432-1000598			90.00	98.18	100.00	NA	100.00	NA	98.44	100.00	100.00	NA	95.83	NA	97.65	89.47	93.75	NA	96.49	NA	95.65	100.00	NA	100.00	98.11	NA	100.00	84.21	80.95	NA	97.62	NA	100.00	100.00	96.00	100.00	91.89	93.33	97.92	95.00	-2.92	0.253072	0.709176
N	alternative_donor	DENND4B	chr1	-	chr1:153905507-153905672	chr1:153905507-153905607		chr1:153905608-153905672	chr1:153905672-153905673		5.88	7.69	4.84	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	2.44	0.00	1.35	NA	NA	4.44	NA	4.76	3.45	7.69	0.00	10.00	3.70	2.38	2.56	5.88	9.52	3.85	NA	4.65	4.11	1.75	0.00	5.16	5.16	0.229577	0.599785
K	jcn_only_AA	RNF121,TRIM22	chr11	+	chr11:71701764-71706485	chr11:71701764-71705764					100.00	100.00	97.30	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	90.00	92.31	NA	95.00	100.00	95.83	100.00	100.00	0.00	0.363217	0.663989
K	jcn_only_AD	AMZ2	chr17	+	chr17:66247529-66252954	chr17:66252018-66252954		chr17:66247529-66252017	chr17:66247528-66247529		92.31	96.30	96.67	100.00	95.88	100.00	100.00	85.71	86.96	NA	91.67	100.00	90.32	NA	92.00	100.00	84.21	NA	95.92	100.00	100.00	91.30	96.77	95.24	100.00	100.00	93.10	88.24	95.35	100.00	95.56	94.03	100.00	95.56	100.00	95.12	98.15	95.56	-2.59	0.470455	0.721034
K	intron_retention		chr17	+	chr17:74382397-74382473				chr17:74382396-74382397;chr17:74382473-74382474		8.29	18.75	6.79	4.57	4.33	4.10	0.00	0.94	1.58	0.71	0.53	0.75	0.00	2.24	2.31	0.79	0.90	0.65	NA	6.76	7.45	7.77	7.73	6.92	0.00	10.48	7.01	1.85	4.15	2.77	22.62	14.12	5.26	4.35	5.51	5.12	0.00	7.52	7.52	0.737808	1.000000
N	jcn_only_AD	RNF220	chr1	+	chr1:45098058-45101216	chr1:45098245-45101216		chr1:45098058-45098244	chr1:45098057-45098058		0.00	0.00	8.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	SMCHD1	chr18	+	chr18:2796520-2802525;chr18:2799382-2802525;chr18:2800735-2802525	chr18:2800739-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		6.06	0.00	9.68	NA	0.00	0.00	0.00	4.41	7.14	0.00	0.00	0.00	0.00	5.36	0.00	7.69	0.00	4.17	NA	2.56	NA	0.00	0.00	0.00	NA	4.49	0.00	0.00	0.00	0.00	4.26	0.00	0.00	0.00	0.00	5.26	0.00	4.45	4.45	0.000234	0.060704
K	cassette	TIMM17B	chrX	-	chrX:48752385-48754041	chrX:48752385-48752634;chrX:48752785-48754041		chrX:48752635-48752784			5.56	4.35	5.26	2.94	5.80	0.00	4.62	3.12	11.76	15.38	8.57	5.88	5.97	5.00	9.09	6.85	8.82	9.09	2.70	13.04	4.08	6.45	6.56	8.70	3.57	12.12	6.35	8.82	5.26	4.76	3.70	8.33	5.71	10.34	4.00	6.38	4.48	5.28	0.79	0.210035	0.709176
N	alternative_acceptor	ZMIZ2	chr7	+	chr7:44805179-44805762;chr7:44805179-44805886;chr7:44805179-44809053	chr7:44805179-44805565		chr7:44805566-44805762;chr7:44805763-44805886;chr7:44805887-44809053	chr7:44805762-44805763;chr7:44805886-44805887;chr7:44809053-44809054		1.52	2.99	11.41	5.71	3.92	9.09	12.50	15.22	15.79	8.70	7.69	23.08	12.00	11.11	11.20	2.94	3.33	18.75	11.11	11.11	12.93	15.15	8.22	9.09	4.55	22.99	7.97	11.76	9.30	16.67	17.07	10.71	5.66	10.00	2.63	12.50	8.38	13.16	4.78	0.177565	0.660713
N	jcn_only_AD	TRPM2	chr21	+	chr21:45857051-45858949	chr21:45858198-45858949		chr21:45857051-45858197	chr21:45857050-45857051		0.00	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	PLOD3	chr7	-	chr7:100855656-100856122	chr7:100855656-100855810;chr7:100855937-100856122		chr7:100855811-100855936			100.00	100.00	92.86	NA	100.00	NA	100.00	100.00	100.00	98.21	100.00	100.00	100.00	95.45	100.00	98.41	99.09	96.92	100.00	95.45	100.00	82.61	91.07	100.00	NA	100.00	100.00	96.30	93.48	100.00	95.00	100.00	100.00	87.23	92.59	96.72	100.00	97.72	-2.28	0.076019	0.640086
N	alternative_acceptor	LMAN2	chr5	-	chr5:176764771-176765488;chr5:176764787-176765488	chr5:176764766-176765488		chr5:176764766-176764770;chr5:176764771-176764786	chr5:176764765-176764766;chr5:176764770-176764771		9.64	6.74	8.57	9.38	6.85	11.43	2.35	7.14	4.17	3.12	4.65	4.00	5.43	9.09	4.84	6.25	6.52	3.17	14.10	5.56	8.75	15.25	7.69	7.25	3.03	7.14	4.76	7.14	7.69	7.14	10.00	10.11	11.90	5.97	10.14	7.76	6.08	8.12	2.03	0.700115	0.886757
N	alternative_donor	MAP4K2	chr11	-	chr11:64559895-64563744	chr11:64559895-64560032		chr11:64560033-64563744	chr11:64563744-64563745		0.00	7.14	7.14	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	NA	6.25	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.733673	0.890213
K	intron_retention	CDK5RAP3,RP11-6N17.9	chr17	+	chr17:46051017-46051296				chr17:46051016-46051017;chr17:46051296-46051297		0.00	0.00	1.28	NA	0.00	NA	0.00	0.00	3.45	0.00	0.00	0.00	5.08	0.00	6.06	0.00	0.00	0.00	NA	5.71	0.00	0.00	0.00	0.00	0.00	0.00	1.52	3.23	3.64	3.03	0.00	1.75	0.00	1.82	3.64	0.00	0.00	0.00	0.00	0.986292	1.000000
N	cassette	KYNU	chr2	+	chr2:143787249-143794704;chr2:143787249-143797996;chr2:143743591-143797996	chr2:143743591-143790804,chr2:143787249-143790804;chr2:143790891-143794704,chr2:143790891-143797996		chr2:143790805-143790890			99.10	100.00	97.97	100.00	100.00	100.00	100.00	99.53	100.00	100.00	100.00	100.00	100.00	100.00	99.61	99.72	100.00	100.00	100.00	94.12	98.96	97.87	97.92	97.59	100.00	100.00	99.00	100.00	98.64	99.66	96.55	97.21	91.89	99.42	100.00	100.00	100.00	99.31	-0.69	0.801294	0.936947
N	cassette	ALDH16A1	chr19	+	chr19:49956679-49962926;chr19:49961846-49962926	chr19:49956679-49962216,chr19:49961846-49962216;chr19:49962344-49962926		chr19:49962217-49962343			83.33	100.00	100.00	NA	NA	NA	100.00	87.88	100.00	100.00	100.00	100.00	100.00	87.88	100.00	100.00	97.22	100.00	NA	81.25	NA	NA	100.00	NA	NA	88.89	100.00	NA	100.00	NA	NA	100.00	80.00	NA	100.00	92.31	100.00	87.88	-12.12	0.163547	0.709176
N	alternative_acceptor		chr16	+	chr16:31341486-31341688	chr16:31341486-31341628		chr16:31341629-31341688	chr16:31341688-31341689		100.00	100.00	100.00	100.00	97.92	100.00	96.97	100.00	100.00	97.59	100.00	100.00	97.12	100.00	NA	100.00	100.00	94.44	100.00	100.00	96.49	100.00	100.00	94.87	100.00	100.00	100.00	94.87	97.44	100.00	100.00	100.00	100.00	100.00	98.04	98.17	100.00	100.00	0.00	0.174860	0.660713
N	alternative_acceptor	ENGASE	chr17	+	chr17:40717330-40717493;chr17:40717330-40717623	chr17:40717330-40717488		chr17:40717489-40717493;chr17:40717494-40717623	chr17:40717493-40717494;chr17:40717623-40717624		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	97.14	NA	94.74	100.00	100.00	100.00	100.00	93.33	91.67	97.56	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AD	SF1,SIGIRR	chr11	-	chr11:406060-406348	chr11:406060-406141		chr11:406142-406348	chr11:406348-406349		0.00	3.54	0.00	0.00	0.00	0.00	2.50	15.38	7.69	0.00	0.00	0.00	2.63	0.00	0.00	0.00	9.38	0.00	2.53	0.00	0.00	8.33	0.00	0.00	0.00	4.35	3.70	6.25	4.26	9.09	0.00	0.00	2.82	NA	0.00	0.00	2.58	0.00	-2.58	0.725115	0.857936
K	cassette	MRPL35	chr2	+	chr2:86433419-86437602	chr2:86433419-86434305;chr2:86434451-86437602		chr2:86434306-86434450			100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	93.75	95.35	100.00	94.74	100.00	100.00	100.00	100.00	95.08	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	FAU	chr11	-	chr11:64889012-64889210	chr11:64889117-64889210		chr11:64889012-64889116	chr11:64889011-64889012		98.56	97.19	97.53	98.87	98.18	97.38	97.65	97.32	98.24	97.82	97.89	97.26	98.45	97.74	98.37	97.39	99.23	97.50	94.32	95.77	94.88	98.14	98.04	96.14	97.30	99.35	98.14	97.63	97.28	97.41	96.20	94.71	95.23	98.64	97.90	97.91	97.25	97.53	0.28	0.369578	0.709013
N	alternative_acceptor		chr12	+	chr12:57574263-57574457	chr12:57574263-57574449		chr12:57574450-57574457	chr12:57574457-57574458		88.89	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.56	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.395964	0.713243
N	jcn_only_AD	MYO9B	chr19	+	chr19:17313752-17313955;chr19:17313794-17313955;chr19:17313758-17313955;chr19:17313693-17313955	chr19:17313814-17313955		chr19:17313693-17313751;chr19:17313752-17313757;chr19:17313758-17313793;chr19:17313794-17313813	chr19:17313692-17313693;chr19:17313751-17313752;chr19:17313757-17313758;chr19:17313793-17313794		0.00	0.00	0.00	0.00	1.64	NA	2.63	6.58	0.00	0.87	0.00	0.00	0.70	7.14	3.09	0.68	0.00	0.00	0.00	0.00	0.00	0.00	0.94	0.87	0.00	0.00	0.00	2.11	1.35	0.00	0.00	0.00	0.00	0.99	0.00	1.89	0.00	0.00	0.00	0.296188	0.657607
K	intron_retention	EPN1	chr19	+	chr19:56203424-56204051				chr19:56203423-56203424;chr19:56204051-56204052		5.26	4.67	10.26	8.33	3.12	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	8.33	2.63	6.25	3.85	18.18	13.21	2.38	5.77	4.55	2.27	0.00	8.11	5.36	8.33	6.67	6.67	12.50	4.38	3.82	-0.56	0.991076	1.000000
N	alternative_acceptor	JTB	chr1	-	chr1:153949883-153950019;chr1:153949748-153950019	chr1:153949866-153950019		chr1:153949748-153949865;chr1:153949866-153949882	chr1:153949747-153949748;chr1:153949865-153949866		53.85	66.67	57.06	55.32	56.20	NA	53.91	52.63	51.96	58.97	66.25	63.64	57.03	NA	56.52	58.14	67.95	62.50	66.27	58.67	63.31	52.63	55.65	NA	68.42	56.60	56.34	52.38	60.20	53.06	60.61	57.69	67.74	59.18	54.41	54.29	66.47	56.60	-9.87	0.048264	0.570243
K	intron_retention	HSD17B14	chr19	-	chr19:49335017-49335922				chr19:49335016-49335017;chr19:49335922-49335923		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.77	0.00	1.37	1.75	0.00	0.00	0.00	0.00	0.00	0.735348	1.000000
K	intron_retention		chr1	-	chr1:153635272-153635494				chr1:153635271-153635272;chr1:153635494-153635495		2.22	0.00	6.67	0.00	2.68	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	1.06	0.52	1.92	1.04	1.61	7.32	1.16	3.29	3.33	3.36	0.00	1.64	2.15	0.00	0.94	2.44	7.37	5.41	2.00	3.01	4.63	4.41	0.00	1.93	1.93	0.280658	1.000000
K	intron_retention	VMP1	chr17	+	chr17:57915759-57917128				chr17:57915758-57915759;chr17:57917128-57917129		26.76	0.00	41.71	20.69	10.20	NA	2.68	21.43	11.65	7.00	1.54	8.33	3.33	15.29	20.83	12.82	2.59	6.52	0.00	24.78	18.75	33.33	12.04	35.23	0.00	37.84	27.40	24.42	9.00	28.57	27.54	27.74	10.00	29.03	21.43	46.92	1.34	25.77	24.43	0.004030	1.000000
K	alternative_first_exon	PLEC	chr8	-	chr8:145012861-145013526,chr8:145012861-145021505,chr8:145012861-145086697;chr8:145012861-145013517;chr8:145012861-145016559;chr8:145012861-145047570;chr8:145012861-145027893;chr8:145012861-145017946;chr8:145012861-145024351	chr8:145012861-145049344	chr8:145013518-145013758;chr8:145016560-145016692;chr8:145047571-145047697;chr8:145027894-145028088;chr8:145017947-145018126;chr8:145024352-145025044	chr8:145049345-145049543			28.57	37.04	26.92	NA	NA	NA	22.41	12.90	29.41	6.52	10.58	15.79	16.67	4.65	33.33	4.69	8.82	4.00	23.08	16.67	NA	NA	10.34	15.38	28.57	15.38	28.57	NA	11.11	NA	NA	NA	28.57	12.50	14.29	14.29	25.82	15.38	-10.44	0.062454	0.200906
N	alternative_acceptor	KCNN4	chr19	-	chr19:44273713-44273870;chr19:44273759-44273870	chr19:44273651-44273870		chr19:44273651-44273712;chr19:44273713-44273758	chr19:44273650-44273651;chr19:44273712-44273713		4.55	3.92	1.54	3.39	4.88	3.48	2.50	3.03	5.00	1.17	0.00	1.23	2.63	0.00	NA	3.45	3.06	2.63	3.12	7.32	2.30	4.00	4.46	1.99	NA	3.12	0.00	4.35	3.85	4.31	5.56	5.26	3.12	1.64	2.33	3.21	3.12	3.83	0.71	0.441849	0.750964
N	cassette	GTF2A2	chr15	-	chr15:59934462-59949604;chr15:59934462-59944404	chr15:59934462-59942867;chr15:59942973-59944404,chr15:59942973-59949604		chr15:59942868-59942972			100.00	100.00	100.00	93.55	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.88	100.00	100.00	97.37	95.24	100.00	100.00	97.67	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	95.83	100.00	98.65	100.00	100.00	100.00	0.00	0.762345	0.925284
K	intron_retention	EIF4G2	chr11	-	chr11:10821304-10821636				chr11:10821303-10821304;chr11:10821636-10821637		8.41	6.45	7.53	5.00	2.94	NA	0.59	0.81	0.83	0.32	0.71	0.22	0.42	0.95	1.85	0.92	0.30	0.27	0.00	7.80	1.92	5.06	3.20	6.67	NA	5.94	4.85	2.50	3.03	1.67	14.29	11.45	9.09	5.30	5.09	5.54	0.59	6.87	6.28	0.994774	1.000000
K	intron_retention	TTYH3	chr7	+	chr7:2687273-2687592				chr7:2687272-2687273;chr7:2687592-2687593		5.45	8.70	5.26	NA	NA	NA	0.61	0.62	0.00	0.67	0.93	0.00	0.49	0.80	2.56	0.91	0.84	1.69	0.00	1.92	NA	0.00	6.84	3.85	5.00	2.25	3.39	2.99	1.45	0.00	3.03	2.17	18.18	4.79	3.65	2.26	2.81	2.08	-0.72	0.753474	1.000000
N	alternative_acceptor	AKT1S1	chr19	-	chr19:50373318-50374803	chr19:50374408-50374803		chr19:50373318-50374407	chr19:50373317-50373318		5.00	3.85	12.12	NA	4.00	9.09	3.33	3.85	2.44	0.00	4.17	NA	0.00	1.92	1.52	2.63	0.00	NA	7.14	10.71	3.45	11.76	6.82	3.85	0.00	4.65	5.71	6.67	7.14	8.57	7.41	6.45	0.00	11.76	5.41	6.67	1.67	4.83	3.16	0.094157	0.598353
N	alternative_acceptor	STK38	chr6	-	chr6:36462415-36464487	chr6:36463692-36464487		chr6:36462415-36463691	chr6:36462414-36462415		100.00	89.19	100.00	NA	100.00	NA	98.15	95.35	94.12	100.00	100.00	100.00	100.00	95.35	94.44	100.00	100.00	100.00	80.00	100.00	84.62	93.33	95.12	100.00	NA	100.00	100.00	88.24	93.75	100.00	93.75	94.74	100.00	94.87	97.56	100.00	98.15	97.67	-0.48	0.382207	0.709013
K	cassette	PPP1R12A	chr12	-	chr12:80192365-80201005;chr12:80192365-80199945	chr12:80192365-80199371;chr12:80199549-80199945,chr12:80199549-80201005		chr12:80199372-80199548			90.00	22.73	75.00	NA	NA	NA	50.00	91.89	69.70	44.44	51.61	57.14	43.75	93.75	63.89	37.14	41.46	52.17	NA	80.00	NA	NA	54.55	NA	11.76	100.00	83.33	NA	NA	NA	NA	NA	20.00	47.06	50.00	45.83	22.73	91.89	69.16	0.000384	0.062129
K	intron_retention		chr16	+	chr16:720774-720891				chr16:720773-720774;chr16:720891-720892		13.51	50.00	25.00	NA	7.69	NA	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	14.29	16.00	7.69	16.67	14.63	20.00	15.15	15.38	18.60	20.00	13.33	16.67	21.74	35.90	30.77	18.18	22.22	20.59	14.72	14.45	-0.27	0.603996	1.000000
N	cassette	MAPKAP1	chr9	-	chr9:128230389-128305337;chr9:128246863-128305337	chr9:128230389-128268588,chr9:128246863-128268588;chr9:128268697-128305337		chr9:128268589-128268696			56.76	48.28	81.25	69.23	65.91	NA	74.74	84.21	78.79	74.03	73.95	84.38	76.83	62.50	77.50	79.69	82.80	82.76	63.64	74.19	80.77	68.33	76.34	65.67	86.67	66.67	68.89	79.41	78.12	68.42	66.67	70.00	64.29	70.67	77.11	75.00	69.52	66.67	-2.84	0.933463	0.983459
K	alternative_acceptor	MCRS1	chr12	-	chr12:49954149-49956783	chr12:49954154-49956783		chr12:49954149-49954153	chr12:49954148-49954149		86.36	100.00	93.10	NA	94.74	NA	100.00	84.62	95.00	92.86	96.00	100.00	100.00	100.00	89.47	100.00	96.55	92.86	90.00	86.67	83.33	NA	92.00	72.73	NA	86.67	93.75	100.00	90.48	86.67	83.33	84.21	100.00	85.71	91.30	78.26	100.00	86.52	-13.48	0.011640	0.475629
K	cassette	ING4	chr12	-	chr12:6760552-6761827	chr12:6760552-6761436;chr12:6761585-6761827		chr12:6761437-6761584			100.00	100.00	100.00	NA	93.75	NA	100.00	100.00	100.00	NA	100.00	NA	97.06	94.12	100.00	NA	100.00	NA	100.00	93.75	100.00	NA	88.89	NA	100.00	93.10	100.00	NA	100.00	NA	94.74	96.67	95.45	NA	94.44	92.31	100.00	94.43	-5.57	0.103501	0.685199
K	intron_retention	NEDD8-MDP1	chr14	-	chr14:24685004-24685124				chr14:24685003-24685004;chr14:24685124-24685125		0.00	7.69	10.34	NA	21.74	NA	8.70	0.00	3.70	NA	25.00	NA	4.35	0.00	3.12	0.00	NA	NA	8.33	4.76	6.90	10.00	25.00	NA	NA	13.33	12.90	NA	0.00	NA	5.00	12.50	17.86	NA	12.00	16.67	8.33	2.38	-5.95	0.294241	1.000000
K	jcn_only_AA	TNK2	chr3	-	chr3:195597250-195599146;chr3:195597077-195599146	chr3:195597276-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		5.56	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	3.77	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	6.25	NA	0.00	0.00	0.00	0.00	0.184372	0.663989
K	intron_retention	STK25	chr2	-	chr2:242438830-242439587				chr2:242438829-242438830;chr2:242439587-242439588		20.00	38.10	20.41	NA	10.34	NA	1.39	3.33	1.67	2.44	0.00	0.00	1.45	3.23	7.69	2.78	6.90	0.00	8.33	13.04	17.65	9.09	19.57	16.67	20.00	16.00	19.05	21.43	15.56	19.05	14.29	28.57	26.67	9.09	17.07	18.60	14.16	13.66	-0.50	0.919695	1.000000
N	cassette	CTSB	chr8	-	chr8:11718989-11725509;chr8:11715450-11725509;chr8:11719988-11725509;chr8:11712424-11725509;chr8:11710989-11725509	chr8:11719988-11721884,chr8:11710989-11721884,chr8:11712424-11721884,chr8:11715450-11721884,chr8:11718989-11721884;chr8:11721993-11725509		chr8:11721885-11721992			1.98	2.77	2.77	2.05	2.21	5.56	4.18	2.87	3.82	4.52	4.38	4.92	5.44	4.16	5.77	5.64	5.56	5.61	3.98	3.12	6.56	2.85	2.88	3.09	8.40	2.70	2.64	2.83	3.07	2.97	3.74	4.08	4.72	3.09	3.03	3.09	4.45	3.00	-1.45	0.070965	0.628418
K	jcn_only_AD	ZC3H18	chr16	+	chr16:88643784-88653007	chr16:88644135-88653007		chr16:88643784-88644134	chr16:88643783-88643784		NA	100.00	100.00	NA	NA	NA	100.00	83.33	100.00	100.00	100.00	100.00	84.21	93.75	82.61	94.44	100.00	86.67	NA	83.33	NA	NA	90.48	90.91	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	90.00	88.89	92.00	100.00	88.54	-11.46	0.336899	0.657607
N	alternative_acceptor	GPR84	chr12	-	chr12:54757024-54758176;chr12:54757058-54758176;chr12:54757061-54758176;chr12:54756919-54758176;chr12:54757143-54758176	chr12:54757644-54758176		chr12:54756919-54757023;chr12:54757024-54757057;chr12:54757058-54757060;chr12:54757061-54757142;chr12:54757143-54757643	chr12:54756918-54756919;chr12:54757023-54757024;chr12:54757057-54757058;chr12:54757060-54757061;chr12:54757142-54757143		97.58	58.33	97.00	68.57	80.00	NA	96.15	100.00	92.86	97.22	98.28	89.69	100.00	97.68	100.00	95.00	97.14	93.39	NA	94.59	76.71	94.44	96.10	98.67	NA	91.49	95.62	91.67	87.50	87.50	78.95	91.84	60.00	94.94	96.05	96.84	78.08	96.09	18.01	0.284938	0.709013
N	cassette	NBR1	chr17	+	chr17:41354730-41361919	chr17:41354730-41355697;chr17:41355804-41361919		chr17:41355698-41355803			97.78	100.00	100.00	NA	NA	NA	100.00	97.73	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	NA	NA	100.00	94.44	NA	100.00	100.00	100.00	95.12	100.00	NA	94.12	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.89	-1.11	0.271084	0.709176
N	intron_retention		chr22	-	chr22:50965761-50966016				chr22:50965760-50965761;chr22:50966016-50966017		100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.26	100.00	100.00	96.00	93.10	100.00	100.00	99.58	100.00	100.00	100.00	100.00	100.00	100.00	98.93	100.00	98.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention	TNFRSF14	chr1	+	chr1:2493255-2494303				chr1:2493254-2493255;chr1:2494303-2494304		15.66	16.02	24.68	8.75	9.78	7.64	3.09	1.52	2.02	0.00	2.94	2.86	3.70	1.49	3.33	3.20	2.80	2.78	11.41	17.81	8.00	15.20	15.29	14.53	7.60	12.35	19.40	5.73	7.22	9.88	18.56	20.15	11.26	17.42	15.75	19.16	9.43	14.00	4.57	0.937610	1.000000
N	jcn_only_AA	MS4A6A	chr11	-	chr11:59943473-59945732;chr11:59943007-59945732;chr11:59944889-59945732	chr11:59943085-59945732		chr11:59943007-59943084;chr11:59943085-59943472;chr11:59943473-59944888	chr11:59943006-59943007;chr11:59943084-59943085;chr11:59943472-59943473		93.64	88.85	89.47	97.22	97.08	94.44	98.25	93.43	100.00	98.47	98.09	98.12	97.07	98.59	NA	98.59	97.52	98.21	94.64	100.00	NA	98.28	96.43	98.62	88.62	94.12	100.00	100.00	97.86	97.79	NA	100.00	94.21	97.44	97.20	97.57	94.42	94.12	-0.30	0.305338	0.663989
K	intron_retention	DNAJC2	chr7	-	chr7:102956536-102957276				chr7:102956535-102956536;chr7:102957276-102957277		0.00	3.70	5.00	0.00	4.17	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	13.79	0.00	0.00	0.00	0.00	3.33	13.64	0.00	0.00	0.00	2.13	0.00	2.04	4.08	3.70	3.12	3.51	6.06	3.70	0.00	-3.70	0.435287	1.000000
K	intron_retention		chrX	-	chrX:153051429-153051666				chrX:153051428-153051429;chrX:153051666-153051667		9.62	12.12	13.21	19.40	13.99	14.73	5.19	5.88	2.86	6.67	3.57	5.88	6.98	7.50	7.69	8.47	7.59	7.69	9.48	7.32	7.69	23.81	18.99	16.67	11.26	11.90	12.90	9.52	17.78	18.33	9.76	13.73	10.92	12.82	13.33	18.00	10.20	8.56	-1.64	0.749739	1.000000
K	cassette	UBE2F,UBE2F-SCLY	chr2	+	chr2:238875775-238896604	chr2:238875775-238881733;chr2:238881868-238896604		chr2:238881734-238881867			100.00	100.00	100.00	100.00	100.00	100.00	97.14	99.08	100.00	98.25	94.34	98.46	98.41	100.00	100.00	100.00	95.35	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.981617	0.995216
N	alternative_acceptor	CCDC88A	chr2	-	chr2:55515492-55518811;chr2:55506167-55518811	chr2:55518301-55518811		chr2:55506167-55515491;chr2:55515492-55518300	chr2:55506166-55506167;chr2:55515491-55515492		82.35	62.50	91.30	NA	64.71	NA	94.74	92.31	NA	NA	92.86	NA	94.44	80.00	91.67	NA	96.15	NA	63.64	92.86	66.67	NA	85.71	NA	60.00	88.24	83.33	NA	80.95	NA	NA	90.91	NA	88.89	88.00	NA	63.64	88.24	24.60	0.211776	0.671156
N	alternative_acceptor	RNH1	chr11	-	chr11:503613-504426;chr11:502182-504426	chr11:502250-504426		chr11:502182-502249;chr11:502250-503612	chr11:502181-502182;chr11:502249-502250		86.36	94.74	NA	100.00	76.47	NA	94.83	91.30	NA	57.14	83.67	64.71	78.45	86.00	90.62	82.14	58.93	83.02	62.50	NA	38.46	63.64	62.22	31.25	73.91	87.50	92.86	80.00	83.82	74.29	74.07	NA	53.85	82.00	80.60	80.52	76.18	86.36	10.18	0.281182	0.709013
N	jcn_only_AA	SYNGR2	chr17	+	chr17:76167731-76167931;chr17:76167731-76167819;chr17:76167731-76167879	chr17:76167731-76167846		chr17:76167820-76167846;chr17:76167847-76167879;chr17:76167880-76167931	chr17:76167846-76167847;chr17:76167879-76167880;chr17:76167931-76167932		1.08	0.00	1.73	0.00	1.60	0.00	0.00	0.35	0.23	0.00	0.20	0.00	0.54	0.00	0.00	0.00	0.00	0.00	6.02	3.74	1.65	1.98	2.05	2.46	0.00	0.90	1.32	0.00	0.82	0.00	4.42	1.97	6.85	2.29	1.24	1.06	0.27	0.99	0.72	0.759528	0.892526
K	intron_retention	ESYT1	chr12	+	chr12:56536718-56536800				chr12:56536717-56536718;chr12:56536800-56536801		2.56	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.72	0.00	0.00	5.88	0.00	0.00	0.91	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.589314	1.000000
K	cassette	NENF	chr1	+	chr1:212606463-212617680	chr1:212606463-212615887;chr1:212615968-212617680		chr1:212615888-212615967			85.94	93.51	90.91	95.12	87.67	97.00	93.94	97.50	93.55	95.83	95.52	93.94	96.61	97.22	100.00	96.49	94.34	95.83	90.31	84.93	91.30	89.66	87.94	88.64	88.61	90.16	80.43	87.23	93.33	94.00	92.04	85.94	92.12	91.30	92.11	91.14	92.81	91.10	-1.72	0.637326	0.868138
K	intron_retention	RP11-498C9.3	chr17	+	chr17:79825815-79825888				chr17:79825814-79825815;chr17:79825888-79825889		92.92	89.33	93.46	91.82	92.01	92.52	88.11	92.82	89.55	89.54	89.64	87.97	90.61	92.09	91.33	91.08	91.09	88.12	92.16	93.83	94.06	94.71	95.99	94.21	89.21	90.05	90.58	94.76	94.72	94.66	93.75	92.22	92.77	93.15	94.85	92.68	89.97	92.87	2.90	0.322321	1.000000
K	cassette	ACSL5	chr10	+	chr10:114186118-114186975	chr10:114186118-114186545;chr10:114186618-114186975		chr10:114186546-114186617			94.92	100.00	100.00	97.84	100.00	97.89	88.89	87.88	90.32	79.00	91.11	76.79	100.00	100.00	100.00	97.37	100.00	100.00	94.12	96.43	75.76	97.03	97.96	97.59	100.00	100.00	100.00	100.00	95.74	97.85	96.20	97.01	100.00	96.00	100.00	97.67	100.00	96.31	-3.69	0.642649	0.868427
K	alternative_donor	NME2	chr17	+	chr17:49243859-49244187	chr17:49243925-49244187		chr17:49243859-49243924	chr17:49243858-49243859		0.00	0.00	0.00	0.00	0.00	0.00	0.36	0.00	0.48	0.51	0.71	0.63	28.05	28.57	20.94	28.82	28.16	29.55	0.00	0.00	0.75	0.65	0.29	0.00	0.00	0.00	0.00	0.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.996886	0.998383
K	intron_retention	ARRDC2	chr19	+	chr19:18121168-18121380				chr19:18121167-18121168;chr19:18121380-18121381		0.00	2.50	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	4.35	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	4.76	6.90	20.00	0.00	0.00	NA	1.25	0.00	-1.25	0.978458	1.000000
K	cassette	RAB5C	chr17	-	chr17:40282609-40306910	chr17:40282609-40289779;chr17:40289897-40306910		chr17:40289780-40289896			3.88	3.95	3.31	0.00	3.70	NA	6.13	6.73	8.81	6.53	5.18	5.90	5.26	8.18	8.94	6.01	4.36	6.16	0.00	3.50	4.65	3.68	2.81	3.77	7.14	6.75	7.24	6.25	4.21	5.88	5.91	5.88	0.00	5.71	6.64	7.37	4.61	6.32	1.71	0.192242	0.709176
N	jcn_only_AD	PGS1	chr17	+	chr17:76419377-76420141;chr17:76415807-76420141;chr17:76415757-76420141	chr17:76416405-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		6.52	13.04	12.35	10.34	8.00	15.38	0.00	10.00	10.47	8.70	0.00	10.00	0.00	14.00	11.03	14.29	0.00	NA	12.50	12.00	8.77	8.33	10.53	9.09	NA	11.54	12.22	14.29	0.00	11.43	10.00	15.15	4.17	22.22	NA	18.75	4.17	10.77	6.60	0.183323	0.657607
K	alternative_acceptor	TECR	chr19	+	chr19:14673388-14673952;chr19:14673388-14674017	chr19:14673388-14673985		chr19:14673953-14673985;chr19:14673986-14674017	chr19:14673985-14673986;chr19:14674017-14674018		2.78	0.00	2.86	4.76	1.67	0.00	3.37	0.00	2.17	3.23	3.94	1.74	3.41	4.55	0.00	3.92	4.69	3.53	2.63	4.35	2.86	1.41	1.09	1.64	0.00	0.00	2.08	2.11	3.11	1.54	0.00	5.13	2.78	5.08	2.78	3.85	2.71	1.39	-1.32	0.941027	0.984632
N	jcn_only_AD	FAM162A	chr3	+	chr3:122128059-122128585;chr3:122128263-122128585	chr3:122126237-122128585		chr3:122126237-122128058;chr3:122128059-122128262	chr3:122126236-122126237;chr3:122128058-122128059		100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.06	100.00	100.00	100.00	98.46	100.00	92.78	100.00	100.00	100.00	100.00	100.00	92.45	100.00	100.00	100.00	100.00	100.00	90.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.92	-7.08	0.027666	0.378797
N	alternative_donor	CCDC47	chr17	-	chr17:61824322-61829299	chr17:61824322-61829226		chr17:61829227-61829299	chr17:61829299-61829300		0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	1.85	0.00	1.85	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.189433	0.565974
N	alternative_donor	SNN	chr16	+	chr16:11769026-11769830;chr16:11764019-11769830;chr16:11764564-11769830	chr16:11762397-11769830		chr16:11762397-11764018;chr16:11764019-11764563;chr16:11764564-11769025	chr16:11762396-11762397;chr16:11764018-11764019;chr16:11764563-11764564		94.74	100.00	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.30	100.00	100.00	100.00	99.26	100.00	100.00	100.00	96.30	100.00	98.39	100.00	97.25	100.00	98.15	NA	100.00	100.00	100.00	97.30	NA	100.00	97.44	95.83	98.01	100.00	97.72	-2.28	0.045397	0.377550
N	alternative_acceptor	KCNN4	chr19	-	chr19:44273651-44273870;chr19:44273759-44273870	chr19:44273713-44273870		chr19:44273651-44273712;chr19:44273713-44273758	chr19:44273650-44273651;chr19:44273712-44273713		95.45	96.08	96.92	95.76	93.50	94.78	97.50	96.97	95.00	97.66	100.00	98.77	97.37	100.00	NA	95.57	96.94	97.37	96.88	92.68	95.40	95.20	94.90	96.03	NA	96.88	100.00	94.41	94.62	94.74	94.44	94.74	96.88	98.36	97.67	95.51	96.88	96.16	-0.72	0.441849	0.750964
N	jcn_only_AA	PPRC1,ZFYVE27	chr10	+	chr10:99517481-99518784;chr10:99517481-99518992	chr10:99517481-99517624		chr10:99517625-99518784;chr10:99518785-99518992	chr10:99518784-99518785;chr10:99518992-99518993		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	7.69	0.00	13.64	NA	9.09	0.00	3.70	0.00	0.00	NA	NA	0.00	10.00	0.00	0.00	0.00	0.00	10.00	0.00	NA	0.00	NA	5.88	2.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.900407	0.966004
K	intron_retention	ARRB2	chr17	+	chr17:4621319-4621555				chr17:4621318-4621319;chr17:4621555-4621556		8.76	12.90	10.38	0.00	5.56	0.00	0.59	0.63	1.08	0.27	0.29	0.00	1.38	1.31	3.70	0.44	0.64	0.00	6.58	4.66	4.03	0.00	7.69	1.94	29.27	4.63	6.42	3.82	4.03	2.60	5.88	9.06	7.69	6.29	6.79	1.71	7.13	4.64	-2.49	0.495992	1.000000
N	alternative_donor	COL23A1,DHX29	chr5	-	chr5:177686749-177688722	chr5:177686749-177687202		chr5:177687203-177688722	chr5:177688722-177688723		0.00	6.67	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.33	0.00	2.44	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.233928	0.605820
N	alternative_donor	CES2	chr16	+	chr16:66976153-66976550	chr16:66976475-66976550		chr16:66976153-66976474	chr16:66976152-66976153		2.50	0.00	2.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	2.78	0.00	0.00	0.00	4.17	2.27	0.00	0.00	5.41	3.03	0.00	0.00	0.00	0.191020	0.566251
K	alternative_acceptor	CUEDC1	chr17	-	chr17:55940647-55943834	chr17:55940719-55943834		chr17:55940647-55940718	chr17:55940646-55940647		2.27	0.00	3.12	7.14	2.33	10.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	3.03	3.12	0.00	0.00	0.00	0.00	5.56	0.00	0.00	5.77	0.00	0.00	1.52	2.78	5.26	5.56	4.00	6.52	2.50	0.00	3.70	3.92	5.41	0.00	2.65	2.65	0.041751	0.568546
N	coord_cassette	MYO1F	chr19	-	chr19:8618322-8642190	chr19:8618322-8619360;chr19:8619456-8619537;chr19:8619586-8620512;chr19:8620681-8642190		chr19:8619361-8619455;chr19:8619538-8619585;chr19:8620513-8620680			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	cassette	HDGF	chr1	-	chr1:156714141-156714799	chr1:156714141-156714292;chr1:156714363-156714799		chr1:156714293-156714362			2.68	3.36	3.82	4.00	3.49	0.00	2.31	8.70	4.74	2.22	2.30	1.54	1.51	8.26	3.46	2.62	2.45	1.11	2.17	4.17	3.23	3.74	1.08	2.41	0.00	4.26	2.43	0.92	2.48	4.92	10.64	4.05	0.00	2.70	2.65	2.94	1.84	6.26	4.42	0.010812	0.314700
N	cassette	ANXA2	chr15	-	chr15:60678286-60689456;chr15:60685640-60689456;chr15:60682517-60689456;chr15:60682517-60690141;chr15:60678286-60690141;chr15:60685640-60690141	chr15:60678286-60688478,chr15:60682517-60688478,chr15:60685640-60688478;chr15:60688627-60689456,chr15:60688627-60690141		chr15:60688479-60688626			1.21	1.03	0.39	12.20	5.14	23.21	1.06	1.19	0.76	3.41	1.21	2.41	0.89	1.58	1.21	4.11	1.14	2.12	3.16	0.98	1.82	6.05	2.27	4.89	0.00	0.51	0.55	6.69	3.39	5.75	0.94	1.18	3.41	2.55	1.88	2.29	1.04	1.08	0.04	0.402073	0.717168
K	intron_retention	GAS5	chr1	-	chr1:173833214-173833394				chr1:173833213-173833214;chr1:173833394-173833395		12.20	3.45	5.63	5.07	5.35	5.86	3.57	0.00	0.00	2.78	5.26	0.00	5.66	0.00	0.00	6.15	9.30	0.00	2.87	5.41	4.67	5.85	6.28	6.54	1.44	0.00	2.74	5.56	6.62	8.93	10.11	6.30	5.42	4.35	5.33	3.94	3.51	2.71	-0.80	0.999409	1.000000
K	cassette	PNPLA6	chr19	+	chr19:7607815-7614792	chr19:7607815-7607892;chr19:7607971-7614792		chr19:7607893-7607970			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	100.00	100.00	100.00	NA	98.39	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chrX	+	chrX:41206266-41206567				chrX:41206265-41206266;chrX:41206567-41206568		2.33	0.00	10.11	NA	NA	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.50	0.00	2.94	0.00	2.94	NA	2.44	1.96	0.00	0.00	0.00	2.56	2.86	0.00	2.22	2.13	3.17	0.00	2.38	2.38	0.369130	1.000000
N	jcn_only_AA		chr20	+	chr20:61436383-61438033;chr20:61436383-61438893	chr20:61436383-61438888		chr20:61438034-61438888;chr20:61438889-61438893	chr20:61438888-61438889;chr20:61438893-61438894		96.82	100.00	100.00	100.00	100.00	100.00	100.00	99.16	98.29	96.80	98.46	97.42	96.00	96.01	96.21	96.84	97.75	98.49	91.30	96.95	100.00	96.30	98.36	97.52	92.00	95.67	100.00	98.32	100.00	97.75	97.55	97.67	100.00	98.21	100.00	98.49	98.00	96.88	-1.12	0.794753	0.910039
N	alternative_first_exon		chr1	-	chr1:89572736-89573693;chr1:89572736-89591545;chr1:89572736-89575359	chr1:89572736-89573705	chr1:89591546-89591797;chr1:89575360-89575553	chr1:89573706-89573974			100.00	100.00	100.00	100.00	100.00	99.90	92.86	95.92	100.00	93.02	100.00	93.04	100.00	97.67	97.96	97.62	100.00	93.58	100.00	98.04	100.00	100.00	100.00	98.31	100.00	98.97	100.00	97.83	100.00	99.16	98.98	98.46	100.00	100.00	98.18	97.92	100.00	98.50	-1.50	0.691175	0.782568
K	intron_retention	NGDN	chr14	+	chr14:23946770-23947215				chr14:23946769-23946770;chr14:23947215-23947216		5.56	0.00	4.17	0.00	3.28	1.03	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	2.78	2.78	6.25	0.00	0.00	0.00	0.00	2.56	0.00	11.76	6.52	5.26	6.45	2.56	0.00	0.00	0.00	0.00	0.687942	1.000000
N	jcn_only_AA		chr6	+	chr6:31602335-31602691;chr6:31602335-31602717;chr6:31602335-31602574	chr6:31602335-31602529		chr6:31602530-31602574;chr6:31602575-31602691;chr6:31602692-31602717	chr6:31602574-31602575;chr6:31602691-31602692;chr6:31602717-31602718		100.00	100.00	97.59	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.59	100.00	100.00	97.56	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	88.00	97.96	NA	100.00	100.00	98.61	100.00	100.00	0.00	0.244734	0.663989
K	intron_retention	SRSF11	chr1	+	chr1:70716187-70716293				chr1:70716186-70716187;chr1:70716293-70716294		0.00	0.00	6.38	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.78	0.00	2.70	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	7.69	2.04	NA	3.51	0.00	2.50	0.00	0.00	0.00	0.594508	1.000000
N	cassette	EIF4A2	chr3	+	chr3:186505672-186506885;chr3:186505672-186506913	chr3:186505672-186506098;chr3:186506210-186506885,chr3:186506210-186506913		chr3:186506099-186506209			11.30	5.41	10.68	35.00	27.69	50.00	6.25	10.38	7.14	24.32	22.55	15.28	13.28	19.74	10.95	37.23	25.74	20.00	14.63	18.00	12.09	43.88	29.71	40.82	15.62	16.29	12.02	41.51	32.10	35.42	22.22	16.48	12.50	44.72	32.24	38.51	12.89	17.14	4.25	0.082925	0.641134
N	cassette	VMO1	chr17	-	chr17:4688955-4689438;chr17:4688955-4692946;chr17:4688955-4689452;chr17:4688955-4692779	chr17:4688955-4689251;chr17:4689348-4692946,chr17:4689348-4689452,chr17:4689348-4689438,chr17:4689348-4692779		chr17:4689252-4689347			99.61	100.00	97.59	100.00	98.01	99.47	100.00	99.60	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	76.66	71.30	84.55	82.69	87.21	88.33	100.00	99.81	-0.19	0.762728	0.925284
N	alternative_acceptor	ABR	chr17	-	chr17:936696-953289;chr17:948891-953289;chr17:936518-953289	chr17:916405-953289		chr17:916405-936517;chr17:936518-936695;chr17:936696-948890	chr17:916404-916405;chr17:936517-936518;chr17:936695-936696		100.00	97.14	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	99.11	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.24	100.00	100.00	98.57	100.00	1.43	0.249445	0.706436
N	alternative_donor	MICU2,PARP4	chr13	-	chr13:25005615-25008532	chr13:25005615-25006718		chr13:25006719-25008532	chr13:25008532-25008533		2.11	1.23	7.27	0.00	0.00	0.00	0.00	1.30	1.39	0.00	0.00	0.00	1.20	1.37	1.35	0.00	1.92	3.23	0.00	2.53	0.00	0.00	1.28	5.00	0.00	3.12	1.14	2.78	0.00	1.56	1.49	2.99	0.00	4.26	1.82	5.05	0.00	1.80	1.80	0.002590	0.124802
K	intron_retention	RPS6KB2	chr11	+	chr11:67202166-67202459				chr11:67202165-67202166;chr11:67202459-67202460		0.00	2.38	4.76	9.52	3.26	5.56	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.48	0.00	5.71	0.00	2.08	9.09	3.92	5.26	2.86	0.00	4.65	5.56	9.38	3.77	4.51	0.00	0.00	0.00	3.15	0.00	-3.15	0.981130	1.000000
N	jcn_only_AA	LIMK2,TRABD	chr22	+	chr22:50635781-50635877	chr22:50635781-50635865		chr22:50635866-50635877	chr22:50635877-50635878		0.00	0.00	0.00	NA	0.00	NA	3.57	0.00	3.33	5.88	0.00	NA	0.00	0.00	0.00	7.32	0.00	NA	0.00	0.00	0.00	13.33	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.869009	0.949094
K	intron_retention	OCIAD1	chr4	+	chr4:48853993-48859229				chr4:48853992-48853993;chr4:48859229-48859230		4.35	9.68	3.88	0.00	3.70	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	1.41	1.98	2.78	0.00	0.00	8.00	3.45	1.43	0.00	1.79	0.00	8.33	3.23	2.52	4.44	1.03	1.85	9.68	2.38	3.45	6.25	4.49	2.53	5.72	3.34	-2.38	0.346721	1.000000
N	jcn_only_AD		chr19	-	chr19:17514136-17514507;chr19:17514136-17514484	chr19:17514136-17514488		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		99.93	100.00	100.00	100.00	100.00	100.00	63.41	70.32	70.47	68.15	63.97	68.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.83	100.00	100.00	100.00	100.00	100.00	0.00	0.884717	0.942747
N	jcn_only_AD	SLC25A28	chr10	-	chr10:101373682-101380289;chr10:101373682-101375209;chr10:101373682-101378795;chr10:101373682-101378998;chr10:101373682-101379801	chr10:101373682-101379483		chr10:101375210-101378795;chr10:101378796-101378998;chr10:101378999-101379483;chr10:101379484-101379801;chr10:101379802-101380289	chr10:101378795-101378796;chr10:101378998-101378999;chr10:101379483-101379484;chr10:101379801-101379802;chr10:101380289-101380290		0.00	0.00	0.00	NA	NA	NA	0.00	2.44	2.73	5.26	0.00	0.86	0.00	0.00	0.00	0.00	0.00	1.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	2.22	1.27	NA	0.00	0.00	2.58	0.00	1.11	1.11	0.077112	0.627804
N	alternative_acceptor		chr1	+	chr1:17965185-17965732;chr1:17965185-17966326	chr1:17965185-17966696		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		90.06	80.00	94.55	90.00	96.55	76.92	97.92	98.01	96.67	98.67	98.04	98.73	98.48	97.56	96.72	97.24	99.23	98.33	100.00	92.50	95.45	94.23	95.51	92.16	NA	86.32	93.10	89.80	95.38	91.20	97.14	94.00	100.00	92.68	94.25	92.55	98.48	94.82	-3.66	0.709850	0.890280
K	cassette	SULT1A1	chr16	-	chr16:28619710-28620028	chr16:28619710-28619798;chr16:28619925-28620028		chr16:28619799-28619924			100.00	100.00	100.00	NA	100.00	NA	98.91	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	96.43	97.87	96.43	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	93.55	100.00	100.00	100.00	100.00	94.74	93.88	96.23	100.00	100.00	0.00	0.193398	0.709176
K	cassette	GUSB	chr7	-	chr7:65439692-65441001	chr7:65439692-65439905;chr7:65440059-65441001		chr7:65439906-65440058			58.33	71.43	55.17	73.33	48.00	40.00	74.07	66.67	71.74	67.29	65.43	65.55	63.57	64.52	65.79	63.51	57.45	53.12	61.54	54.55	64.91	54.55	55.22	61.54	66.67	75.00	72.22	65.22	61.39	66.67	61.54	59.46	50.00	58.54	61.11	59.74	65.12	63.03	-2.09	0.811644	0.936947
N	jcn_only_AA	GALK1	chr17	-	chr17:73754428-73754529	chr17:73754454-73754529		chr17:73754428-73754453	chr17:73754427-73754428		66.67	88.46	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	91.03	NA	96.15	NA	93.33	NA	89.47	100.00	100.00	NA	100.00	100.00	NA	100.00	91.94	NA	NA	NA	91.48	100.00	8.52	0.844796	0.938257
N	cassette	PSPC1	chr13	-	chr13:20251964-20304378	chr13:20251964-20279801;chr13:20279972-20304378		chr13:20279802-20279971			8.33	0.00	11.76	19.05	21.74	12.50	27.27	7.69	0.00	73.33	64.29	66.67	NA	6.25	11.11	27.27	NA	71.43	0.00	0.00	5.00	30.77	29.41	30.77	NA	4.17	7.14	27.78	31.25	28.95	5.88	4.76	5.56	21.74	25.00	15.38	2.78	6.06	3.28	0.696250	0.888129
K	intron_retention	HGS	chr17	+	chr17:79660612-79660683				chr17:79660611-79660612;chr17:79660683-79660684		2.53	0.00	6.31	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	2.59	1.49	1.37	0.00	0.00	6.06	4.35	3.70	6.25	3.95	4.65	3.66	4.26	3.51	2.33	4.65	5.77	5.22	13.33	5.77	3.26	6.84	0.00	3.09	3.09	0.996279	1.000000
K	intron_retention		chr15	-	chr15:75648561-75648641				chr15:75648560-75648561;chr15:75648641-75648642		5.88	6.43	0.00	1.32	4.27	3.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.92	3.70	2.63	0.00	2.50	4.17	0.00	0.00	2.44	0.00	5.77	2.56	11.54	4.00	2.13	0.00	2.27	3.45	0.96	1.85	0.89	0.842341	1.000000
K	jcn_only_AA	RNF135	chr17	+	chr17:29324350-29325679	chr17:29324350-29324474		chr17:29324475-29325679	chr17:29325679-29325680		3.12	2.65	4.35	NA	2.15	NA	3.80	7.14	5.56	0.00	1.00	NA	0.00	4.23	5.56	0.00	3.03	NA	0.00	4.55	0.00	NA	2.15	NA	0.00	12.40	5.26	0.00	1.19	NA	7.27	11.29	0.00	5.56	3.67	0.00	0.00	5.84	5.84	0.009067	0.482846
N	alternative_acceptor	ANPEP	chr15	-	chr15:90345144-90346469;chr15:90345825-90346469;chr15:90345766-90346469	chr15:90344839-90346469		chr15:90344839-90345143;chr15:90345144-90345765;chr15:90345766-90345824	chr15:90344838-90344839;chr15:90345143-90345144;chr15:90345765-90345766		99.46	100.00	98.12	97.35	98.45	87.50	100.00	99.72	100.00	99.03	99.24	98.84	99.77	99.46	99.02	97.08	98.43	96.73	100.00	99.61	98.42	97.78	98.90	96.54	100.00	98.72	98.35	96.66	97.35	96.16	99.67	99.41	100.00	96.52	98.14	94.84	100.00	99.53	-0.47	0.016717	0.508745
N	jcn_only_AA	NCAPH2	chr22	+	chr22:50961596-50961679;chr22:50961596-50961693;chr22:50961596-50961663	chr22:50961596-50961696		chr22:50961664-50961679;chr22:50961680-50961693;chr22:50961694-50961696	chr22:50961679-50961680;chr22:50961693-50961694;chr22:50961696-50961697		0.00	0.00	0.00	0.00	2.30	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.00	10.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	5.31	0.00	0.00	0.00	0.00	1.43	1.43	0.543439	0.779641
K	intron_retention		chr9	-	chr9:131772489-131772948				chr9:131772488-131772489;chr9:131772948-131772949		25.00	7.14	23.81	NA	13.64	NA	5.26	0.00	NA	0.00	0.00	0.00	8.33	NA	12.50	0.00	0.00	0.00	14.29	23.08	18.75	NA	21.74	10.00	NA	6.67	14.29	NA	25.00	6.67	NA	8.33	NA	16.67	9.52	12.50	7.73	14.88	7.14	0.871278	1.000000
K	jcn_only_AA	ERGIC2	chr12	-	chr12:29494695-29496052	chr12:29494750-29496052		chr12:29494695-29494749	chr12:29494694-29494695		94.74	100.00	96.67	NA	86.36	NA	96.30	NA	94.12	86.67	87.88	84.62	100.00	100.00	86.67	100.00	93.10	92.31	92.86	88.24	90.48	100.00	95.83	90.00	NA	90.00	89.66	NA	96.30	87.50	NA	96.67	93.33	93.33	100.00	100.00	96.30	92.37	-3.93	0.336165	0.663989
N	jcn_only_AA	SYMPK	chr19	-	chr19:46321405-46324641	chr19:46321482-46324641		chr19:46321405-46321481	chr19:46321404-46321405		0.00	8.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	cassette	TMBIM6	chr12	+	chr12:50135395-50146246	chr12:50135395-50135739;chr12:50135899-50146246		chr12:50135740-50135898			1.55	0.00	1.05	0.00	2.33	0.00	4.29	4.49	5.88	3.81	2.40	2.64	3.53	6.79	7.32	8.06	2.93	3.45	0.00	3.57	3.64	2.17	2.02	1.66	0.00	1.85	0.86	2.68	1.56	2.61	3.36	0.83	3.70	4.12	2.83	4.38	1.76	3.46	1.70	0.179834	0.709176
K	intron_retention	RBCK1	chr20	+	chr20:401676-402770				chr20:401675-401676;chr20:402770-402771		23.94	10.00	33.33	NA	25.00	NA	0.00	4.29	3.17	0.00	5.56	0.00	5.71	6.45	7.89	12.50	0.00	13.64	27.27	22.00	21.05	30.00	19.44	29.03	33.33	17.24	23.53	50.00	14.29	32.76	9.80	21.95	9.09	42.11	23.81	38.18	9.54	13.52	3.97	0.988701	1.000000
K	jcn_only_AA	HAGH	chr16	-	chr16:1859384-1859754	chr16:1859448-1859754		chr16:1859384-1859447	chr16:1859383-1859384		0.00	0.00	0.00	0.00	0.00	0.00	3.53	4.88	2.74	5.71	2.00	3.70	4.12	4.44	5.63	3.17	3.41	4.65	3.08	11.54	6.12	10.00	3.85	0.00	0.68	6.98	4.17	2.70	3.74	2.63	5.26	5.48	6.57	0.00	7.69	3.33	3.30	5.07	1.77	0.201025	0.663989
K	alternative_first_exon	ARHGEF1	chr19	+	chr19:42387357-42392134	chr19:42388561-42392134	chr19:42387228-42387356	chr19:42388437-42388560			5.26	6.67	7.41	NA	NA	NA	4.76	0.00	0.00	0.00	3.45	NA	3.85	3.45	6.25	18.18	0.00	NA	NA	0.00	NA	NA	0.00	NA	7.69	8.70	12.00	NA	0.00	NA	NA	5.26	NA	NA	7.69	0.00	5.71	3.45	-2.26	0.272767	0.482310
K	jcn_only_AD	RPUSD3	chr3	-	chr3:9879892-9880715	chr3:9879892-9880668		chr3:9880669-9880715	chr3:9880715-9880716		0.00	10.53	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	10.00	0.00	0.00	0.00	NA	5.56	NA	7.41	0.00	0.00	NA	12.50	NA	0.00	0.00	0.00	NA	5.26	0.00	0.00	0.00	9.09	NA	0.00	0.00	3.71	0.00	-3.71	0.079835	0.628811
K	intron_retention	PIN1	chr19	+	chr19:9959878-9960208				chr19:9959877-9959878;chr19:9960208-9960209		100.00	95.89	100.00	100.00	100.00	95.70	95.56	95.83	92.59	100.00	93.88	95.83	94.83	100.00	94.44	97.56	93.75	100.00	95.49	95.65	95.60	100.00	97.14	100.00	98.87	93.33	100.00	100.00	96.05	100.00	100.00	100.00	96.36	100.00	95.45	100.00	95.72	97.91	2.19	0.828400	1.000000
K	intron_retention	GSDMD	chr8	+	chr8:144644692-144644831				chr8:144644691-144644692;chr8:144644831-144644832		0.73	0.00	0.94	6.98	0.00	1.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	1.12	2.04	0.00	0.00	11.76	4.68	0.84	3.61	2.33	0.00	3.57	2.21	3.30	2.30	0.00	0.00	3.48	0.69	0.78	0.09	0.712030	1.000000
N	jcn_only_AD	NABP1	chr2	+	chr2:192549967-192550324;chr2:192548999-192550324;chr2:192549005-192550324	chr2:192549023-192550324		chr2:192548999-192549004;chr2:192549005-192549022;chr2:192549023-192549966	chr2:192548998-192548999;chr2:192549004-192549005;chr2:192549022-192549023		92.04	85.71	93.69	100.00	100.00	94.05	93.67	94.62	94.33	94.16	95.56	95.73	95.74	93.36	94.02	95.33	96.88	94.78	91.67	93.89	96.43	94.87	94.67	95.99	NA	90.24	93.25	96.76	95.77	96.30	92.13	90.91	100.00	95.56	96.08	94.68	93.67	92.75	-0.92	0.803370	0.908253
K	alternative_acceptor	EPB41,RER1	chr1	+	chr1:2332375-2333645	chr1:2332375-2333535		chr1:2333536-2333645	chr1:2333645-2333646		8.37	5.85	6.88	5.26	6.11	7.25	0.59	1.94	1.67	1.35	0.55	1.79	1.53	2.24	2.16	1.29	0.00	0.97	7.84	8.72	5.08	7.00	6.94	4.12	7.87	7.75	6.93	3.74	3.12	4.24	10.74	7.37	7.36	7.25	8.24	5.43	6.61	8.06	1.45	0.485541	0.784622
K	intron_retention	FMNL1	chr17	+	chr17:43321393-43321542				chr17:43321392-43321393;chr17:43321542-43321543		3.86	1.95	4.66	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	1.69	0.00	0.00	4.55	2.34	1.83	1.89	3.57	1.89	10.71	1.25	3.23	3.41	2.26	0.00	4.11	3.44	1.27	1.63	2.94	3.10	1.61	1.79	0.19	0.866799	1.000000
K	cassette	CH17-270A2.2,POLR3GL	chr1	-	chr1:145457605-145459651	chr1:145457605-145457934;chr1:145458004-145459651		chr1:145457935-145458003			71.93	60.87	65.38	NA	71.88	NA	100.00	93.18	92.11	100.00	100.00	100.00	93.33	92.86	87.10	75.00	90.91	NA	81.82	71.43	75.00	NA	73.17	NA	90.00	68.18	74.42	70.00	78.38	70.00	80.56	83.93	61.54	78.95	89.29	62.50	85.91	76.25	-9.66	0.851746	0.950337
K	intron_retention	PRKCSH	chr19	+	chr19:11560244-11561460				chr19:11560243-11560244;chr19:11561460-11561461		32.26	17.81	31.36	17.04	16.90	14.18	33.64	27.69	29.41	23.86	25.93	20.51	36.07	32.73	28.00	28.57	27.73	27.69	15.65	25.27	18.40	21.67	27.27	26.92	18.01	28.41	34.48	19.74	27.70	19.85	18.71	26.52	13.52	23.26	24.14	23.08	17.91	28.05	10.14	0.775627	1.000000
K	jcn_only_AA	HLA-F,LY86	chr6	+	chr6:29691705-29691966	chr6:29691705-29691949		chr6:29691950-29691966	chr6:29691966-29691967		95.77	100.00	97.45	95.71	98.59	96.34	98.60	99.35	99.44	99.67	99.49	99.46	98.88	98.59	98.84	98.55	99.09	99.26	100.00	95.50	98.03	94.23	100.00	94.15	84.62	96.92	98.43	94.32	100.00	95.91	97.17	96.56	100.00	92.86	97.37	96.27	99.44	97.05	-2.39	0.940634	0.980689
K	intron_retention	PLD2	chr17	+	chr17:4726016-4726553				chr17:4726015-4726016;chr17:4726553-4726554		94.12	94.95	92.54	96.88	100.00	94.87	100.00	84.21	86.67	NA	95.00	NA	100.00	100.00	90.91	81.82	95.00	NA	90.48	96.15	96.77	90.00	100.00	90.91	98.52	92.31	95.00	90.48	97.44	100.00	100.00	97.78	95.71	100.00	100.00	95.65	97.11	95.14	-1.98	0.761183	1.000000
K	intron_retention	ZBTB17	chr1	-	chr1:16268916-16269023				chr1:16268915-16268916;chr1:16269023-16269024		7.02	8.16	7.35	7.14	8.00	5.24	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	2.44	8.51	3.77	5.66	5.41	4.35	0.00	2.17	3.80	3.77	0.00	2.80	7.04	7.06	13.89	7.14	8.11	3.33	1.22	5.02	3.80	0.988980	1.000000
N	cassette	DDB1	chr11	-	chr11:61081683-61083756	chr11:61081683-61081779;chr11:61081959-61083756		chr11:61081780-61081958			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	NCBP2	chr3	-	chr3:196666304-196669296	chr3:196666304-196668805		chr3:196668806-196669296	chr3:196669296-196669297		0.00	0.00	7.14	NA	6.67	NA	10.26	17.39	12.82	4.84	5.56	0.00	10.53	21.43	15.00	5.00	10.61	0.00	NA	8.33	7.14	0.00	10.00	0.00	NA	NA	0.00	0.00	7.14	0.00	NA	8.33	21.43	5.88	3.85	0.00	10.39	12.86	2.46	0.855634	0.929940
K	cassette	GSK3B	chr3	-	chr3:119545703-119582265	chr3:119545703-119562101;chr3:119562201-119582265		chr3:119562102-119562200			91.67	65.38	96.15	100.00	100.00	94.83	94.59	100.00	96.55	100.00	100.00	93.75	100.00	100.00	100.00	94.44	98.21	100.00	100.00	88.89	94.59	100.00	100.00	94.44	100.00	100.00	94.12	100.00	95.24	100.00	93.94	100.00	94.29	100.00	100.00	95.12	97.30	96.97	-0.33	0.585273	0.842370
K	alternative_donor	GTF2F1,NOSIP	chr19	-	chr19:50060251-50060346	chr19:50060251-50060337		chr19:50060338-50060346	chr19:50060346-50060347		8.82	3.51	5.48	4.35	2.88	4.95	0.00	5.13	5.36	7.14	4.76	6.67	5.00	3.03	4.69	4.00	11.76	10.00	4.67	7.41	5.56	4.76	5.08	0.00	3.80	3.88	4.55	9.52	2.08	4.35	9.32	5.45	8.05	10.53	7.50	6.00	4.23	6.27	2.04	0.196279	0.570816
K	intron_retention	TBC1D17	chr19	+	chr19:50387003-50387509				chr19:50387002-50387003;chr19:50387509-50387510		59.65	0.00	56.25	22.22	11.11	45.45	3.70	86.36	37.50	21.43	15.62	26.67	0.00	95.83	53.49	28.57	20.83	NA	7.69	65.96	29.03	50.00	44.68	62.50	0.00	87.50	45.45	64.29	16.67	61.11	36.36	21.67	0.00	22.50	48.78	51.06	0.00	76.16	76.16	0.001022	0.920759
K	alternative_first_exon	NFE2L1	chr17	+	chr17:46128991-46133747	chr17:46132513-46133747	chr17:46127969-46128990	chr17:46132072-46132512			2.27	0.00	1.32	NA	NA	NA	0.00	0.00	0.48	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	NA	0.00	NA	0.00	2.78	6.25	9.09	1.22	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	4.76	0.00	0.00	0.00	0.513768	0.650124
N	alternative_acceptor	TYMP	chr22	-	chr22:50968161-50968332;chr22:50968045-50968332;chr22:50968149-50968332;chr22:50968184-50968332;chr22:50966175-50968332	chr22:50968177-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		2.16	1.54	2.26	2.17	1.49	0.00	2.63	2.14	3.28	4.20	4.71	2.29	3.47	3.98	3.87	5.66	4.43	3.90	1.28	2.59	1.28	0.69	0.50	1.72	1.12	2.36	1.91	2.37	4.55	3.26	2.08	2.11	1.30	3.67	0.55	2.53	1.42	2.26	0.84	0.205746	0.669309
K	alternative_donor	C11orf31,RP11-691N7.6	chr11	+	chr11:57509700-57510334	chr11:57509720-57510334		chr11:57509700-57509719	chr11:57509699-57509700		100.00	91.33	95.00	93.06	94.37	94.21	97.83	93.94	95.83	100.00	100.00	100.00	96.63	100.00	93.33	100.00	100.00	100.00	94.71	100.00	97.75	97.67	95.60	100.00	90.16	85.71	89.29	94.55	93.75	95.24	86.11	90.91	95.54	94.44	96.05	95.08	95.12	96.97	1.84	0.981665	0.994374
N	jcn_only_AA	CAMTA2	chr17	-	chr17:4872275-4872444;chr17:4872255-4872444	chr17:4872277-4872444		chr17:4872255-4872274;chr17:4872275-4872276	chr17:4872254-4872255;chr17:4872274-4872275		100.00	93.55	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.24	NA	100.00	100.00	95.45	94.44	100.00	96.55	100.00	100.00	0.00	0.182558	0.663989
K	alternative_first_exon	FRG1	chr4	+	chr4:190862227-190864356	chr4:190863160-190864356	chr4:190861943-190862226	chr4:190862988-190863159			0.00	6.25	6.67	NA	0.00	NA	2.17	0.00	2.78	0.00	3.51	0.00	3.92	0.00	5.88	0.00	4.17	0.00	0.00	2.94	0.00	0.00	2.22	0.00	0.00	3.33	8.33	4.17	2.22	5.26	5.56	7.69	0.00	4.55	5.41	3.57	1.08	1.47	0.39	0.953684	0.968189
K	intron_retention	TMEM150B	chr19	-	chr19:55831535-55831758				chr19:55831534-55831535;chr19:55831758-55831759		2.20	0.00	4.26	9.09	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.70	0.00	0.00	0.00	NA	2.63	4.65	0.00	15.00	0.00	44.44	1.67	3.61	6.45	6.67	4.11	2.13	3.33	15.38	0.00	2.63	1.05	0.00	1.90	1.90	0.493646	1.000000
N	alternative_donor	WDFY2	chr13	+	chr13:52327056-52329493;chr13:52328534-52329493	chr13:52325552-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		93.75	90.91	88.89	NA	NA	NA	96.43	94.87	100.00	NA	100.00	NA	92.00	91.18	90.91	NA	94.12	NA	NA	91.67	100.00	NA	NA	NA	100.00	86.11	89.66	NA	NA	NA	93.33	93.33	NA	90.00	NA	NA	94.22	92.50	-1.72	0.271010	0.645499
N	jcn_only_AA	DOPEY2	chr21	+	chr21:45215132-45217306	chr21:45215132-45217302		chr21:45217303-45217306	chr21:45217306-45217307		100.00	100.00	100.00	100.00	94.87	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	95.24	100.00	97.37	NA	100.00	100.00	95.83	91.30	92.98	96.77	100.00	NA	100.00	100.00	94.64	100.00	85.71	90.91	85.71	98.00	89.58	100.00	100.00	100.00	0.00	0.791470	0.909279
N	jcn_only_AD	FDPS	chr1	+	chr1:155282196-155287731;chr1:155282071-155287731	chr1:155282187-155287731		chr1:155282071-155282186;chr1:155282187-155282195	chr1:155282070-155282071;chr1:155282186-155282187		100.00	100.00	100.00	100.00	100.00	100.00	99.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.84	100.00	100.00	97.22	86.96	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	83.64	100.00	92.11	100.00	100.00	100.00	100.00	0.00	0.534988	0.757311
K	intron_retention	BAG6	chr6	-	chr6:31609200-31609315				chr6:31609199-31609200;chr6:31609315-31609316		1.63	1.94	2.04	3.08	0.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.84	2.47	3.77	1.89	1.33	0.00	1.15	0.94	0.00	0.85	0.00	5.43	5.56	1.82	3.77	3.03	2.68	0.00	1.39	1.39	0.460129	1.000000
N	alternative_acceptor		chr19	+	chr19:58905963-58906075;chr19:58905963-58906078	chr19:58905963-58906048		chr19:58906049-58906075;chr19:58906076-58906078	chr19:58906075-58906076;chr19:58906078-58906079		90.91	97.48	100.00	99.65	99.25	99.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.58	100.00	100.00	97.60	100.00	99.42	100.00	98.68	97.70	99.28	NA	100.00	100.00	100.00	100.00	92.86	100.00	96.84	98.08	98.36	99.26	98.44	100.00	1.56	0.436365	0.747010
N	cassette	FPGS	chr9	+	chr9:130569367-130569699;chr9:130566980-130569699	chr9:130566980-130569487,chr9:130569367-130569487;chr9:130569566-130569699		chr9:130569488-130569565			96.08	100.00	93.81	96.55	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	96.00	100.00	100.00	92.11	97.67	93.75	95.83	95.54	NA	100.00	97.14	95.83	95.24	98.51	100.00	96.88	NA	90.32	100.00	98.33	100.00	100.00	0.00	0.203573	0.709176
N	jcn_only_AD	SMARCB1	chr22	+	chr22:24144152-24145481;chr22:24143269-24145481;chr22:24143158-24145481	chr22:24143323-24145481		chr22:24143158-24143268;chr22:24143269-24143322;chr22:24143323-24144151	chr22:24143157-24143158;chr22:24143268-24143269;chr22:24143322-24143323		5.26	0.00	0.00	0.00	0.00	0.00	1.79	3.33	0.00	0.00	1.69	0.00	3.28	4.35	3.45	0.00	2.94	0.00	0.00	5.00	8.70	8.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	3.84	3.84	0.095698	0.639657
N	jcn_only_AA	SNHG1	chr11	-	chr11:62620154-62620282;chr11:62620139-62620282	chr11:62620131-62620282		chr11:62620131-62620138;chr11:62620139-62620153	chr11:62620130-62620131;chr11:62620138-62620139		0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	6.67	0.00	3.92	3.85	8.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	7.14	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	cassette	ABHD17A	chr19	-	chr19:1877687-1879919	chr19:1877687-1878662;chr19:1878904-1879919		chr19:1878663-1878903			34.48	20.51	48.15	30.77	24.66	NA	3.03	8.33	9.09	6.25	4.76	10.00	5.77	18.18	9.52	4.76	7.55	NA	12.00	47.62	24.14	35.71	34.78	NA	32.35	28.57	39.29	37.50	19.23	30.77	47.06	38.71	18.60	33.33	44.83	31.82	15.30	31.52	16.22	0.080436	0.641134
N	cassette		chr3	.	chr3:41278201-41281309;chr3:41278201-41281150	chr3:41278201-41279506;chr3:41279568-41281309,chr3:41279568-41281150		chr3:41279507-41279567			100.00	100.00	100.00	100.00	95.31	100.00	100.00	100.00	96.33	98.17	96.12	95.67	96.77	100.00	100.00	100.00	98.72	99.20	77.78	94.64	100.00	100.00	97.44	100.00	100.00	98.85	98.55	97.26	96.59	98.45	96.61	97.40	100.00	95.98	95.38	97.44	100.00	99.42	-0.58	0.516726	0.794120
N	jcn_only_AA	NGDN	chr14	+	chr14:53235652-53237754	chr14:53235652-53237750		chr14:53237751-53237754	chr14:53237754-53237755		94.74	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	jcn_only_AA	MRPS11	chr15	+	chr15:89015957-89018402;chr15:89015957-89018260	chr15:89015957-89018340		chr15:89018261-89018340;chr15:89018341-89018402	chr15:89018340-89018341;chr15:89018402-89018403		100.00	100.00	94.23	93.10	94.37	100.00	95.83	93.10	98.25	98.25	96.77	93.94	95.24	100.00	97.47	96.77	96.00	100.00	92.11	100.00	97.62	90.62	96.97	97.44	100.00	100.00	96.61	97.56	97.01	97.14	100.00	97.01	95.24	93.10	97.78	97.06	95.53	100.00	4.47	0.181600	0.663989
N	jcn_only_AA	TMEM59	chr1	-	chr1:54506511-54507396	chr1:54506514-54507396		chr1:54506511-54506513	chr1:54506510-54506511		5.76	4.94	4.55	1.25	4.76	4.93	6.37	8.80	8.44	7.45	9.31	7.10	7.27	4.62	8.99	9.20	9.64	8.46	5.56	6.31	6.63	5.06	4.00	5.02	6.28	5.69	7.03	7.45	8.55	8.87	6.38	7.27	5.75	4.31	7.22	5.31	6.02	6.04	0.02	0.733391	0.881383
N	jcn_only_AA	FCGR2A	chr1	+	chr1:161479865-161480586;chr1:161479865-161480630	chr1:161479865-161480623		chr1:161480587-161480623;chr1:161480624-161480630	chr1:161480623-161480624;chr1:161480630-161480631		100.00	100.00	96.50	100.00	100.00	100.00	100.00	96.70	100.00	95.98	100.00	96.09	100.00	100.00	95.24	100.00	100.00	96.03	100.00	99.82	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.70	100.00	100.00	97.78	99.73	100.00	100.00	0.00	0.335735	0.663989
N	alternative_acceptor	CSNK1A1	chr5	-	chr5:148876424-148885045;chr5:148884547-148885045	chr5:148884299-148885045		chr5:148876424-148884298;chr5:148884299-148884546	chr5:148876423-148876424;chr5:148884298-148884299		8.20	17.39	18.18	8.70	8.33	20.83	2.00	1.45	1.32	1.49	1.47	1.89	1.35	1.67	3.03	1.82	3.28	3.03	11.76	15.56	8.00	18.18	6.15	15.69	NA	5.97	13.11	10.71	7.41	5.56	11.54	15.38	12.50	16.25	15.07	14.29	11.76	7.08	-4.68	0.691045	0.883019
K	intron_retention	CCT6A	chr7	+	chr7:56129543-56130375				chr7:56129542-56129543;chr7:56130375-56130376		3.57	6.90	8.43	4.41	4.72	6.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	2.08	0.00	3.03	9.26	3.49	6.60	7.80	13.89	1.92	5.71	5.38	4.67	4.95	4.05	3.70	7.02	3.70	5.36	4.32	9.76	2.47	3.63	1.16	0.389618	1.000000
K	intron_retention		chr9	+	chr9:139744590-139745206				chr9:139744589-139744590;chr9:139745206-139745207		4.55	3.53	7.55	1.07	1.40	1.07	0.00	0.00	3.17	1.59	0.72	0.00	0.84	4.35	5.56	1.90	1.67	0.00	2.31	1.92	2.63	2.53	2.72	2.02	3.63	0.00	14.81	0.00	2.94	1.98	8.14	6.82	3.25	0.64	2.92	0.90	2.78	3.13	0.35	0.627555	1.000000
N	jcn_only_AA	CYB5R4,TIAM2	chr6	+	chr6:84650321-84665016	chr6:84650321-84662703		chr6:84662704-84665016	chr6:84665016-84665017		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	RGL2	chr6	-	chr6:33261694-33261810	chr6:33261713-33261810		chr6:33261694-33261712	chr6:33261693-33261694		4.65	2.94	7.04	NA	10.34	NA	0.00	0.00	0.00	NA	0.00	NA	4.88	0.00	16.67	NA	0.00	NA	0.00	6.25	11.76	7.69	8.33	0.00	5.26	3.45	10.61	NA	12.20	NA	6.06	7.27	12.50	0.00	9.80	0.00	3.91	4.05	0.14	0.707111	0.890280
K	alternative_acceptor	DNAJC17	chr15	-	chr15:41068491-41068739	chr15:41068600-41068739		chr15:41068491-41068599	chr15:41068490-41068491		0.00	0.00	0.00	NA	6.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.57	0.00	0.00	NA	7.41	NA	0.00	10.00	5.00	0.00	0.00	NA	NA	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.532349	0.814465
K	intron_retention	E4F1	chr16	+	chr16:2285003-2285081				chr16:2285002-2285003;chr16:2285081-2285082		16.67	16.18	16.67	9.09	11.32	15.62	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	11.76	0.00	0.00	NA	8.96	15.38	15.38	15.15	16.67	14.29	20.00	6.67	12.50	12.50	11.43	11.11	42.86	23.40	20.59	10.00	4.76	7.14	12.57	16.03	3.46	0.617092	1.000000
K	intron_retention		chr17	+	chr17:71203396-71204452				chr17:71203395-71203396;chr17:71204452-71204453		33.33	7.14	33.33	17.65	17.24	10.00	45.00	43.75	50.00	57.14	60.87	NA	30.00	50.00	33.33	52.17	53.85	50.00	12.82	35.29	19.35	26.32	37.50	37.50	7.14	21.43	40.00	35.29	40.00	31.82	28.57	40.00	21.74	40.00	35.00	25.93	17.28	34.31	17.03	0.506605	1.000000
K	intron_retention		chr19	-	chr19:1109211-1109290				chr19:1109210-1109211;chr19:1109290-1109291		2.17	9.62	3.29	1.18	3.45	1.42	0.00	0.00	0.00	1.20	2.78	0.00	0.00	0.84	2.21	0.99	0.00	0.79	6.67	2.84	2.53	4.84	3.53	2.22	0.00	1.45	2.22	2.09	3.12	1.49	5.76	6.19	8.47	3.45	5.13	1.84	3.33	1.81	-1.52	0.725317	1.000000
K	intron_retention		chr7	-	chr7:102960126-102960202				chr7:102960125-102960126;chr7:102960202-102960203		NA	27.78	3.70	0.00	3.23	NA	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	6.52	0.00	7.14	NA	6.25	0.00	3.12	0.00	0.00	26.67	6.67	7.69	2.27	3.85	5.41	0.00	9.79	9.79	0.760926	1.000000
N	jcn_only_AA	SLCO2B1	chr11	+	chr11:74914473-74914912;chr11:74914473-74925508;chr11:74914473-74914893;chr11:74914473-74925486;chr11:74914473-74915444	chr11:74914473-74921929		chr11:74914894-74914912;chr11:74914913-74915444;chr11:74915445-74921929;chr11:74921930-74925486;chr11:74925487-74925508	chr11:74914912-74914913;chr11:74915444-74915445;chr11:74921929-74921930;chr11:74925486-74925487;chr11:74925508-74925509		0.00	0.00	0.00	0.00	5.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	1.86	0.00	2.72	0.00	0.00	0.00	1.06	3.33	NA	0.00	4.17	0.00	0.00	0.00	1.36	0.00	-1.36	0.083630	0.663989
N	cassette	NDUFB6	chr9	-	chr9:32553943-32572878;chr9:32558953-32572878	chr9:32558953-32570957,chr9:32553943-32570957;chr9:32571051-32572878		chr9:32570958-32571050			96.61	97.74	89.36	90.57	96.23	93.42	91.36	96.77	88.57	93.33	93.94	87.23	86.67	85.71	90.91	91.67	93.33	94.29	88.71	93.48	90.91	100.00	95.60	96.00	90.91	88.00	94.59	100.00	96.77	95.00	89.09	94.44	87.22	91.76	93.10	93.90	89.81	91.28	1.47	0.651834	0.871856
N	jcn_only_AA	S100A8	chr1	-	chr1:153363034-153363516	chr1:153363048-153363516		chr1:153363034-153363047	chr1:153363033-153363034		0.00	0.00	0.00	0.00	4.76	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.85	5.86	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.70	7.85	0.00	0.00	8.57	0.00	0.00	0.00	0.757074	0.891694
K	intron_retention	ARFGAP1	chr20	+	chr20:61914204-61916217				chr20:61914203-61914204;chr20:61916217-61916218		14.71	5.00	13.33	NA	12.50	NA	0.00	6.25	0.00	3.12	0.00	0.00	9.76	5.56	12.90	2.94	0.00	5.00	0.00	11.11	6.67	21.05	6.38	23.33	28.57	10.00	8.82	10.00	5.00	19.05	8.33	10.17	4.76	20.00	16.28	12.96	4.88	9.16	4.28	0.736462	1.000000
N	jcn_only_AD	TSC2	chr16	+	chr16:2133818-2134951	chr16:2134717-2134951					100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	96.97	86.67	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	jcn_only_AD	ATG101	chr12	+	chr12:52464027-52464137;chr12:52463727-52464137	chr12:52463856-52464137		chr12:52463727-52463855;chr12:52463856-52464026	chr12:52463726-52463727;chr12:52463855-52463856		0.00	33.33	13.64	0.00	12.50	0.00	4.76	15.38	6.90	7.69	13.04	0.00	10.00	18.18	4.76	8.51	8.33	4.76	21.43	NA	0.00	16.00	12.90	10.00	33.33	8.33	7.14	7.69	12.50	0.00	NA	0.00	11.11	0.00	21.05	6.67	16.27	11.86	-4.41	0.224567	0.657607
K	alternative_acceptor	STRN4	chr19	-	chr19:47230825-47231150;chr19:47230949-47231150	chr19:47230804-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		86.36	84.62	64.52	NA	NA	NA	80.65	86.67	90.32	90.62	87.18	95.65	85.71	92.31	73.53	84.38	86.84	81.82	NA	80.77	NA	81.82	66.67	75.00	80.00	75.00	68.00	80.00	82.35	80.00	63.64	72.73	NA	84.21	78.95	75.00	82.64	83.56	0.93	0.673930	0.880186
N	jcn_only_AA	SLC25A48,TGFBI	chr5	+	chr5:135385270-135388664;chr5:135385270-135386473;chr5:135385270-135388706;chr5:135385270-135388595	chr5:135385270-135386076		chr5:135386077-135386473;chr5:135386474-135388595;chr5:135388596-135388664;chr5:135388665-135388706	chr5:135386473-135386474;chr5:135388595-135388596;chr5:135388664-135388665;chr5:135388706-135388707		0.00	1.17	0.09	7.69	1.36	16.22	0.00	0.21	0.11	0.09	0.06	0.14	0.08	0.26	0.47	0.00	0.07	0.00	1.38	0.00	0.88	0.44	0.14	0.32	0.00	0.00	0.00	0.00	0.10	0.75	1.23	0.05	3.02	0.22	0.09	0.33	0.62	0.10	-0.52	0.251410	0.663989
N	jcn_only_AA	CD33,ICAM4	chr19	+	chr19:51738932-51742772;chr19:51738932-51742327	chr19:51738932-51739077		chr19:51739078-51742327;chr19:51742328-51742772	chr19:51742327-51742328;chr19:51742772-51742773		0.00	5.23	3.95	0.00	1.67	0.00	0.71	0.00	0.00	0.00	3.88	1.56	3.74	NA	0.00	0.00	2.44	3.57	0.00	0.00	0.00	0.00	4.62	0.00	12.82	10.71	7.61	6.25	5.97	4.35	0.00	0.00	2.17	2.13	0.00	3.70	2.96	0.00	-2.96	0.510692	0.760069
K	intron_retention	NAGK	chr2	+	chr2:71302741-71303733				chr2:71302740-71302741;chr2:71303733-71303734		60.61	80.56	75.00	NA	65.38	54.55	17.39	25.00	NA	NA	NA	NA	40.00	23.53	NA	18.18	NA	NA	54.55	41.03	41.18	NA	53.85	50.00	76.74	53.85	80.00	76.47	66.67	62.50	37.50	57.14	51.52	68.75	66.67	82.35	53.03	39.27	-13.77	0.531245	1.000000
K	cassette	UBE2F,UBE2F-SCLY	chr2	+	chr2:238934054-238944518	chr2:238934054-238940862;chr2:238940896-238944518		chr2:238940863-238940895			91.55	100.00	89.74	100.00	98.00	100.00	96.00	97.59	96.00	95.83	100.00	100.00	97.87	97.14	100.00	100.00	97.78	100.00	96.67	97.30	96.49	100.00	93.33	100.00	100.00	93.33	93.75	100.00	100.00	96.88	89.58	93.94	94.12	97.62	100.00	94.38	97.27	95.23	-2.04	0.107315	0.697042
K	intron_retention	RIC8A	chr11	+	chr11:212982-213298				chr11:212981-212982;chr11:213298-213299		8.45	1.72	7.32	17.65	12.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	1.33	0.00	14.29	6.78	7.27	10.34	13.33	20.83	0.00	5.17	13.43	0.00	10.91	5.26	10.91	13.51	3.12	4.44	15.79	8.57	0.86	5.97	5.11	0.807279	1.000000
N	alternative_acceptor		chr3	+	chr3:52537557-52537724;chr3:52537557-52537895	chr3:52537557-52537787		chr3:52537725-52537787;chr3:52537788-52537895	chr3:52537787-52537788;chr3:52537895-52537896		100.00	98.00	100.00	NA	NA	100.00	98.59	100.00	100.00	100.00	99.34	99.33	98.74	100.00	100.00	100.00	98.89	98.92	92.86	96.00	NA	100.00	99.10	100.00	95.19	100.00	96.97	100.00	97.83	100.00	NA	100.00	97.37	100.00	99.15	100.00	97.69	100.00	2.31	0.083883	0.585944
K	cassette	AAMDC	chr11	+	chr11:77553675-77583220	chr11:77553675-77580767;chr11:77580864-77583220		chr11:77580768-77580863			97.30	100.00	92.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	85.71	100.00	96.97	97.06	100.00	100.00	100.00	100.00	98.06	100.00	95.24	100.00	96.00	100.00	100.00	100.00	100.00	100.00	98.25	98.11	100.00	96.97	96.20	100.00	96.15	100.00	99.03	98.65	-0.38	0.962859	0.990355
N	cassette	DNAJC4	chr11	+	chr11:63999437-64001365	chr11:63999437-64000172;chr11:64000338-64001365		chr11:64000173-64000337			100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	96.05	100.00	100.00	93.94	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	NABP1	chr2	+	chr2:192549967-192550324;chr2:192548999-192550324;chr2:192549023-192550324	chr2:192549005-192550324		chr2:192548999-192549004;chr2:192549005-192549022;chr2:192549023-192549966	chr2:192548998-192548999;chr2:192549004-192549005;chr2:192549022-192549023		7.96	14.29	5.99	0.00	0.00	5.95	6.33	5.38	5.13	5.84	4.44	4.27	4.26	6.19	5.68	4.67	3.12	5.22	8.33	4.55	3.57	5.13	5.33	4.01	NA	8.74	6.12	3.24	4.23	3.70	6.74	6.08	0.00	4.44	3.92	4.46	6.33	6.46	0.13	0.984947	0.993847
K	intron_retention	PLEKHJ1	chr19	-	chr19:2233905-2233996				chr19:2233904-2233905;chr19:2233996-2233997		6.25	24.32	19.23	5.41	14.06	15.15	0.00	0.00	0.00	0.00	1.30	0.00	2.50	2.44	1.75	1.27	0.00	0.00	8.82	16.00	9.09	10.00	19.67	11.11	15.79	13.04	5.00	12.12	13.64	13.64	20.00	16.13	18.75	13.33	6.38	5.41	12.30	9.64	-2.66	0.979187	1.000000
K	intron_retention	CHKB,CHKB-CPT1B	chr22	-	chr22:51018512-51018618				chr22:51018511-51018512;chr22:51018618-51018619		8.77	4.17	8.47	6.67	2.50	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	3.45	2.22	9.09	4.55	0.00	2.33	10.42	9.38	8.70	8.70	8.70	10.71	6.00	8.62	3.57	5.00	11.76	8.70	8.55	6.98	12.50	10.81	7.27	3.25	7.35	4.10	0.900094	1.000000
K	alternative_acceptor	CSF3R	chr1	-	chr1:36932429-36932830	chr1:36932510-36932830		chr1:36932429-36932509	chr1:36932428-36932429		2.78	0.00	6.90	7.14	0.00	NA	2.44	0.00	6.45	0.00	3.70	4.65	2.70	4.17	6.67	0.00	0.00	0.00	0.00	8.33	8.70	0.00	0.00	4.55	0.00	2.27	9.26	3.23	2.08	4.35	0.00	4.17	0.00	0.00	0.00	2.22	0.00	2.52	2.52	0.179145	0.660713
K	intron_retention		chr14	-	chr14:24613678-24614266				chr14:24613677-24613678;chr14:24614266-24614267		3.84	0.57	3.32	5.24	2.26	2.90	0.00	0.26	0.45	1.52	1.04	1.93	0.00	0.73	0.85	1.47	0.99	1.36	1.57	3.46	1.42	12.59	3.05	16.36	1.12	3.19	2.81	7.46	4.61	6.55	5.32	4.83	1.20	11.54	4.90	11.89	0.84	3.33	2.48	0.303461	1.000000
K	jcn_only_AA	MYCBP,RP5-864K19.6,RP5-864K19.7	chr1	-	chr1:39332672-39338689	chr1:39333283-39338689					100.00	100.00	94.74	NA	100.00	NA	94.87	100.00	100.00	100.00	95.65	NA	93.44	76.92	NA	82.35	92.86	100.00	90.91	100.00	100.00	NA	92.31	NA	NA	NA	90.91	NA	NA	NA	NA	100.00	100.00	NA	NA	100.00	94.87	100.00	5.13	0.804161	0.916456
N	alternative_acceptor	CSNK2A2	chr16	-	chr16:58192258-58197957	chr16:58193656-58197957		chr16:58192258-58193655	chr16:58192257-58192258		6.06	9.68	15.38	14.29	5.88	22.22	0.00	0.00	7.14	0.00	8.33	0.00	5.26	0.00	7.14	4.76	0.00	0.00	9.68	9.52	5.00	13.33	11.11	13.33	4.88	8.70	5.71	12.50	6.45	8.70	7.69	8.33	6.82	13.04	23.53	10.53	6.04	6.88	0.83	0.758279	0.910949
N	jcn_only_AA	ZNF516	chr18	-	chr18:74070564-74082482	chr18:74074513-74082482		chr18:74070564-74074512	chr18:74070563-74070564		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	90.00	NA	100.00	NA	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.36	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AD	BAG1,DDX58	chr9	-	chr9:33262829-33264273;chr9:33262829-33265483;chr9:33262829-33264221	chr9:33262829-33264203		chr9:33264204-33264221;chr9:33264222-33264273;chr9:33264274-33265483	chr9:33264221-33264222;chr9:33264273-33264274;chr9:33265483-33265484		1.91	10.94	5.08	5.00	0.00	1.52	2.67	1.72	3.67	0.00	4.29	4.96	2.70	2.84	1.43	2.05	2.11	2.16	4.17	0.59	0.00	2.38	1.05	1.40	0.00	1.17	1.59	1.74	1.54	1.72	0.00	2.47	3.75	0.00	3.61	1.47	3.23	1.44	-1.78	0.139939	0.657607
N	alternative_acceptor	RNF19B	chr1	-	chr1:33399879-33403997;chr1:33402911-33403997	chr1:33402879-33403997		chr1:33399879-33402878;chr1:33402879-33402910	chr1:33399878-33399879;chr1:33402878-33402879		0.43	NA	1.35	3.77	5.26	1.28	0.00	0.34	0.35	1.49	4.00	0.25	10.00	0.33	0.78	1.14	2.56	0.42	6.25	0.47	1.22	2.56	3.57	0.36	NA	0.32	1.52	0.93	3.23	0.21	0.74	1.59	18.75	1.14	3.03	0.35	8.12	0.39	-7.74	0.124114	0.610671
K	intron_retention	SLC16A3	chr17	+	chr17:80193927-80194004				chr17:80193926-80193927;chr17:80194004-80194005		95.91	92.37	93.37	90.91	92.12	NA	92.54	93.25	93.27	90.12	90.23	88.00	93.12	93.52	94.05	94.28	91.34	94.64	89.74	87.42	86.24	85.50	82.69	83.72	100.00	92.66	93.84	85.91	85.71	83.61	88.24	86.79	83.33	89.82	90.14	89.63	92.46	92.95	0.50	0.995933	1.000000
N	cassette	FIP1L1	chr4	+	chr4:54310271-54324819	chr4:54310271-54319086;chr4:54319301-54324819		chr4:54319087-54319300			100.00	96.55	96.49	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	97.06	94.34	100.00	100.00	100.00	100.00	100.00	98.53	-1.47	0.199874	0.709176
K	alternative_acceptor	ATP5B	chr12	-	chr12:57036469-57037186	chr12:57036616-57037186		chr12:57036469-57036615	chr12:57036468-57036469		97.54	99.03	96.45	93.48	94.59	85.71	98.05	97.25	98.69	95.70	97.74	96.93	97.74	96.88	97.04	97.74	97.92	97.90	93.18	98.32	96.81	93.29	92.15	92.55	100.00	95.92	100.00	89.42	89.47	88.66	96.43	95.92	90.91	92.11	92.21	94.07	97.89	97.06	-0.83	0.719126	0.894796
K	jcn_only_AD	SF3B1	chr2	-	chr2:198263306-198264778	chr2:198263306-198263692		chr2:198263693-198264778	chr2:198264778-198264779		1.47	0.00	2.84	0.00	2.17	NA	0.00	0.00	1.30	0.00	0.00	1.75	1.11	0.00	0.00	0.00	2.10	2.90	0.00	4.24	5.71	3.96	2.81	5.26	NA	1.74	3.26	2.86	2.61	3.92	6.82	7.43	NA	4.22	2.58	2.60	0.00	1.60	1.60	0.114612	0.646283
K	intron_retention	PMPCA	chr9	+	chr9:139305192-139306448				chr9:139305191-139305192;chr9:139306448-139306449		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	20.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.629122	1.000000
K	alternative_donor	EAPP	chr14	-	chr14:35005482-35008760	chr14:35005482-35008461		chr14:35008462-35008760	chr14:35008760-35008761		0.00	0.00	3.57	NA	0.00	NA	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	3.33	0.00	NA	3.12	0.00	NA	0.00	0.00	0.00	2.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.513861	0.765423
K	jcn_only_AA	PHKG2	chr16	+	chr16:30767594-30767687	chr16:30767594-30767675		chr16:30767676-30767687	chr16:30767687-30767688		9.52	8.89	9.52	NA	14.81	NA	0.00	0.00	8.33	11.76	3.85	NA	8.82	16.67	9.52	10.00	6.25	NA	12.50	4.76	21.95	NA	9.09	NA	42.86	21.43	24.44	NA	5.88	NA	17.65	11.11	11.54	25.00	23.81	30.00	10.21	13.10	2.88	0.734511	0.881383
N	cassette	PLEKHB2	chr2	+	chr2:131884360-131897742;chr2:131884360-131890474;chr2:131884360-131897739	chr2:131884360-131888293;chr2:131888334-131890474,chr2:131888334-131897742,chr2:131888334-131897739		chr2:131888294-131888333			92.11	NA	93.33	NA	100.00	NA	99.65	98.02	97.62	99.19	98.83	98.37	99.31	98.61	98.37	99.34	98.28	97.84	NA	97.10	100.00	100.00	98.57	95.51	100.00	100.00	94.34	100.00	100.00	100.00	93.33	89.80	90.00	94.08	99.29	98.78	99.48	97.56	-1.92	0.805591	0.936947
N	jcn_only_AA	LPXN	chr11	-	chr11:58318354-58318537;chr11:58317620-58318537	chr11:58318118-58318537		chr11:58317620-58318117;chr11:58318118-58318353	chr11:58317619-58317620;chr11:58318117-58318118		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention		chr3	+	chr3:127395425-127395809				chr3:127395424-127395425;chr3:127395809-127395810		2.17	4.11	4.88	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	1.82	0.00	8.57	0.00	0.00	NA	0.00	3.23	0.00	0.00	0.00	0.00	16.22	3.23	4.55	0.00	0.00	0.00	2.44	2.17	2.78	3.70	2.27	4.00	2.30	2.50	0.20	0.769733	1.000000
N	intron_retention		chr5	+	chr5:179263566-179264716				chr5:179263565-179263566;chr5:179264716-179264717		99.61	100.00	100.00	98.10	99.69	96.26	98.66	99.23	98.35	96.28	97.69	97.38	100.00	97.86	98.55	97.17	98.55	100.00	95.14	99.32	92.68	98.16	99.11	98.32	93.77	97.81	98.85	95.66	96.66	94.88	99.27	99.48	98.89	99.30	99.53	99.55	98.78	99.25	0.47	0.411400	1.000000
N	jcn_only_AA	CCDC107	chr9	+	chr9:35660645-35660762;chr9:35660645-35660770;chr9:35660645-35660767	chr9:35660645-35660742		chr9:35660743-35660762;chr9:35660763-35660767;chr9:35660768-35660770	chr9:35660762-35660763;chr9:35660767-35660768;chr9:35660770-35660771		87.50	80.14	85.00	91.67	92.17	100.00	96.23	95.24	100.00	95.83	93.55	100.00	98.48	95.24	97.50	94.12	95.00	100.00	84.07	85.11	83.52	75.86	94.87	94.74	84.72	81.08	91.23	96.00	90.77	96.55	81.67	89.58	81.11	94.44	94.00	91.89	84.39	86.31	1.91	0.965826	0.987545
K	jcn_only_AA	SERBP1	chr1	-	chr1:67889961-67890570	chr1:67890006-67890570		chr1:67889961-67890005	chr1:67889960-67889961		16.90	11.50	19.86	12.73	14.74	9.68	20.08	21.13	20.86	12.77	13.97	15.57	16.96	18.33	21.08	14.05	13.12	14.20	8.20	15.15	16.67	15.48	13.41	15.95	0.00	30.77	20.56	12.88	16.25	12.50	20.83	20.41	10.42	15.71	12.50	11.64	10.96	19.58	8.62	0.029764	0.637417
K	alternative_last_exon	ADGRE2	chr19	-	chr19:14842498-14854231,chr19:14848431-14854231,chr19:14842286-14854231,chr19:14854052-14854231,chr19:14835007-14854231;chr19:14847057-14854231	chr19:14852899-14854231	chr19:14843205-14847056	chr19:14852287-14852898			1.36	3.57	0.99	1.05	3.70	1.74	0.00	0.63	0.00	0.55	0.00	0.00	0.00	0.00	2.17	1.14	1.85	0.87	5.26	0.00	1.54	1.67	2.17	1.18	NA	0.00	0.78	0.88	0.00	1.06	0.00	0.97	6.25	0.96	2.17	0.70	3.57	0.00	-3.57	0.108381	0.333781
N	alternative_donor	SRSF6	chr20	+	chr20:42089229-42089342	chr20:42089239-42089342		chr20:42089229-42089238	chr20:42089228-42089229		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.650093
N	alternative_acceptor	PLD3	chr19	+	chr19:40871838-40872290	chr19:40871838-40872285		chr19:40872286-40872290	chr19:40872290-40872291		25.00	NA	33.33	NA	8.33	NA	16.28	17.21	20.99	22.67	16.81	20.00	20.00	21.69	16.22	18.18	13.64	20.97	NA	27.27	9.52	16.67	22.64	20.75	30.00	23.08	19.51	7.69	16.67	21.43	22.73	13.21	0.00	16.67	30.43	20.00	18.14	22.91	4.77	0.393436	0.711221
N	alternative_acceptor		chr7	+	chr7:2671913-2673737;chr7:2671913-2685405	chr7:2671913-2686486		chr7:2673738-2685405;chr7:2685406-2686486	chr7:2685405-2685406;chr7:2686486-2686487		94.34	86.21	95.60	NA	NA	NA	99.24	98.86	98.81	99.64	99.16	100.00	98.75	99.25	97.62	99.13	99.22	100.00	NA	94.23	NA	94.00	96.30	97.30	64.29	95.35	98.15	98.28	97.26	100.00	96.55	97.50	84.62	94.29	94.21	97.56	86.21	95.95	9.74	0.198830	0.665132
K	intron_retention		chr11	-	chr11:6638385-6638531				chr11:6638384-6638385;chr11:6638531-6638532		5.19	7.41	8.40	NA	0.00	NA	0.00	0.56	0.00	0.00	0.18	0.00	0.31	0.00	0.53	0.20	0.37	0.00	NA	2.78	NA	3.28	3.05	0.54	0.00	1.94	4.96	1.04	1.06	0.00	0.00	6.12	NA	2.55	2.50	1.19	0.15	1.25	1.09	0.794908	1.000000
N	jcn_only_AD	PPP1R21	chr2	+	chr2:48738608-48741853;chr2:48738517-48741853;chr2:48701959-48741853	chr2:48738617-48741853					0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	3.33	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.775519	0.889691
K	jcn_only_AA	CNOT3	chr19	+	chr19:54657578-54657680;chr19:54657578-54659046	chr19:54657578-54658995		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		18.18	12.24	9.09	4.55	9.30	8.33	0.00	21.43	0.00	0.00	0.00	0.00	0.00	12.50	6.25	0.00	5.00	6.25	9.23	14.81	7.14	0.00	8.33	5.26	9.30	10.00	0.00	13.04	6.45	6.00	10.81	10.64	5.88	0.00	15.00	11.76	7.55	13.66	6.10	0.012237	0.486024
K	alternative_donor	PPCS	chr1	+	chr1:42922300-42922917	chr1:42922745-42922917		chr1:42922300-42922744	chr1:42922299-42922300		44.74	36.36	42.31	NA	33.33	NA	56.72	63.41	46.55	54.55	57.41	80.00	55.07	60.53	43.33	65.00	56.86	35.71	30.00	40.62	50.00	57.14	51.11	63.64	NA	48.65	51.16	64.29	75.86	NA	20.69	28.26	40.00	58.33	52.38	54.17	40.00	46.70	6.70	0.740052	0.891105
K	intron_retention		chr2	+	chr2:219249089-219249869				chr2:219249088-219249089;chr2:219249869-219249870		1.83	0.00	3.75	18.18	2.86	NA	0.00	0.68	0.72	0.00	1.41	0.00	0.54	1.37	2.70	0.00	1.10	0.00	0.00	2.14	4.44	0.00	1.61	0.00	8.57	2.53	3.52	1.61	1.49	0.00	1.82	2.99	0.00	4.71	2.47	0.00	0.00	1.83	1.83	0.950487	1.000000
K	cassette	RNH1	chr11	-	chr11:502250-506608;chr11:502250-507112;chr11:502182-506608;chr11:502182-507112	chr11:502250-504823,chr11:502182-504823;chr11:504997-506608,chr11:504997-507112		chr11:504824-504996			7.58	15.62	4.44	15.38	16.28	5.00	31.58	20.83	13.68	32.63	32.94	34.42	28.44	16.38	15.44	25.55	29.15	29.22	10.00	10.00	15.91	13.08	20.40	14.42	33.33	25.93	9.43	26.06	31.55	27.45	19.61	12.50	24.00	23.72	22.16	21.93	26.22	17.99	-8.23	0.165765	0.709176
N	coord_cassette	CRTC2	chr1	-	chr1:153921121-153924872	chr1:153921121-153921590;chr1:153921861-153923735;chr1:153924143-153924872		chr1:153921591-153921860;chr1:153923736-153924142			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.77	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	cassette	LY96	chr8	+	chr8:74903790-74922235	chr8:74903790-74917030;chr8:74917121-74922235		chr8:74917031-74917120			89.80	78.74	85.38	87.74	86.83	85.80	88.15	90.32	86.08	87.86	90.21	88.95	67.71	85.11	75.00	75.51	73.16	79.07	88.32	89.61	88.46	87.95	90.91	88.06	78.15	89.89	89.02	89.29	89.00	91.92	89.71	85.16	88.05	86.67	87.27	91.72	83.39	89.75	6.36	0.076160	0.640086
K	jcn_only_AD	ARRDC1	chr9	+	chr9:140509351-140509525	chr9:140509453-140509525		chr9:140509351-140509452	chr9:140509350-140509351		100.00	100.00	100.00	100.00	100.00	97.06	100.00	92.86	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	NA	98.57	NA	100.00	NA	100.00	NA	97.04	100.00	100.00	100.00	100.00	100.00	NA	NA	96.55	100.00	100.00	90.91	99.28	96.43	-2.85	0.335646	0.657607
K	cassette	NDUFA10	chr2	-	chr2:240960830-240964643	chr2:240960830-240961588;chr2:240961758-240964643		chr2:240961589-240961757			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	NA	85.71	100.00	100.00	100.00	100.00	100.00	96.15	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr1	+	chr1:12089339-12089821				chr1:12089338-12089339;chr1:12089821-12089822		10.00	14.58	13.33	NA	18.18	10.53	0.00	0.00	2.53	5.00	0.00	0.00	3.70	5.00	6.90	6.25	7.69	0.00	18.42	13.79	12.50	NA	23.81	16.67	6.98	7.41	8.33	18.18	25.00	12.31	13.04	12.00	22.50	NA	16.67	8.57	10.78	8.71	-2.08	0.903160	1.000000
K	alternative_acceptor	SLIRP	chr14	+	chr14:78182223-78183844;chr14:78182223-78183838	chr14:78182223-78183822		chr14:78183823-78183838;chr14:78183839-78183844	chr14:78183838-78183839;chr14:78183844-78183845		5.26	0.00	5.88	2.38	1.56	2.47	0.00	NA	0.00	0.00	0.00	0.00	2.70	0.00	0.00	4.00	1.89	3.03	3.92	5.88	2.99	4.00	2.33	0.00	3.03	0.00	3.45	0.00	0.00	0.00	0.00	3.85	4.26	0.00	2.70	6.45	2.87	0.00	-2.87	0.955845	0.990505
K	intron_retention	AP3D1	chr19	-	chr19:2109207-2109871				chr19:2109206-2109207;chr19:2109871-2109872		1.28	4.35	4.76	4.17	0.00	10.00	1.64	2.17	0.00	0.00	0.00	0.00	1.75	1.85	0.00	0.00	1.89	0.00	0.00	1.79	2.17	3.92	1.45	3.39	0.00	2.22	3.57	1.92	0.00	5.88	0.00	2.53	0.00	2.60	2.74	4.49	0.82	1.82	1.00	0.981397	1.000000
K	intron_retention	GUK1	chr1	+	chr1:228333769-228334561				chr1:228333768-228333769;chr1:228334561-228334562		44.44	50.00	50.00	23.53	22.73	41.18	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	20.00	6.25	0.00	NA	18.52	26.67	25.00	33.33	23.81	53.85	45.45	NA	50.00	33.33	18.18	33.33	30.00	40.91	21.74	41.67	27.27	37.50	20.13	28.34	8.21	0.820314	1.000000
K	intron_retention	MICAL1	chr6	-	chr6:109769597-109769934				chr6:109769596-109769597;chr6:109769934-109769935		3.39	8.70	7.27	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	3.45	2.04	0.00	0.00	0.00	6.00	3.03	0.00	7.50	0.00	21.95	4.23	11.76	0.00	2.04	NA	6.52	8.11	5.00	4.00	7.89	2.78	3.04	3.81	0.77	0.915952	1.000000
K	intron_retention		chr12	+	chr12:123466622-123467015				chr12:123466621-123466622;chr12:123467015-123467016		7.59	3.40	5.26	2.84	2.52	2.87	0.00	0.00	0.79	0.42	0.00	0.00	0.32	0.00	1.53	0.00	0.48	0.00	3.72	7.81	2.84	4.00	5.42	4.17	1.92	2.33	4.58	3.68	1.71	3.60	20.41	8.74	5.80	1.01	3.88	4.32	2.66	4.96	2.30	0.535180	1.000000
N	alternative_donor	TMEM126B	chr11	+	chr11:85345324-85346710;chr11:85345221-85346710	chr11:85345652-85346710		chr11:85345221-85345323;chr11:85345324-85345651	chr11:85345220-85345221;chr11:85345323-85345324		0.00	0.00	3.12	NA	0.00	NA	0.00	0.00	2.56	0.00	3.85	4.17	0.00	0.00	2.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	2.56	7.69	NA	5.88	6.45	7.69	0.00	0.00	0.00	3.85	0.00	3.85	2.94	2.33	0.00	0.00	0.00	0.363217	0.650093
N	jcn_only_AD	RALA	chr7	+	chr7:39664027-39726229;chr7:39684757-39726229	chr7:39663425-39726229		chr7:39663425-39664026;chr7:39664027-39684756	chr7:39663424-39663425;chr7:39664026-39664027		95.24	100.00	95.61	94.12	93.22	100.00	97.96	96.85	97.00	97.13	100.00	95.06	98.04	96.92	96.72	95.92	100.00	95.00	NA	91.94	96.36	96.15	95.74	96.15	100.00	96.47	95.60	94.95	98.08	95.95	92.50	91.38	100.00	97.41	97.73	96.26	100.00	95.85	-4.15	0.004079	0.177805
N	jcn_only_AA	LXN	chr3	-	chr3:158377871-158384800;chr3:158363461-158384800;chr3:158363999-158384800	chr3:158384534-158384800		chr3:158363461-158363998;chr3:158363999-158377870;chr3:158377871-158384533	chr3:158363460-158363461;chr3:158363998-158363999;chr3:158377870-158377871		100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	93.82	100.00	100.00	100.00	100.00	100.00	94.01	NA	100.00	NA	100.00	100.00	97.32	100.00	100.00	100.00	100.00	98.00	97.61	100.00	100.00	100.00	100.00	99.27	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.216444	0.663989
K	jcn_only_AA	AP3D1	chr19	-	chr19:2116746-2117220	chr19:2116796-2117220		chr19:2116746-2116795	chr19:2116745-2116746		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	NUDT16	chr3	+	chr3:131102117-131102187				chr3:131102116-131102117;chr3:131102187-131102188		95.24	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	97.50	100.00	100.00	100.00	100.00	96.15	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.829816	1.000000
K	intron_retention	TAZ	chrX	+	chrX:153649476-153649595				chrX:153649475-153649476;chrX:153649595-153649596		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	95.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	87.50	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.321081	1.000000
N	alternative_acceptor	LY6E	chr8	+	chr8:144102409-144102765;chr8:144102409-144102734;chr8:144102409-144102711	chr8:144102409-144102730		chr8:144102712-144102730;chr8:144102731-144102734;chr8:144102735-144102765	chr8:144102730-144102731;chr8:144102734-144102735;chr8:144102765-144102766		95.13	100.00	96.94	94.12	100.00	87.32	93.48	96.70	95.39	93.33	94.12	92.31	100.00	96.34	96.02	93.55	94.12	94.06	NA	89.45	88.73	76.92	100.00	91.49	NA	96.28	98.06	93.62	88.89	91.13	90.89	91.94	85.71	96.00	100.00	95.15	96.74	95.70	-1.04	0.863723	0.954648
N	alternative_first_exon	CFLAR	chr2	+	chr2:201995704-201997751,chr2:201997301-201997751,chr2:201994731-201997751,chr2:201997645-201997751,chr2:201997549-201997751,chr2:201996942-201997751,chr2:201997597-201997751;chr2:201997574-201997751;chr2:201994870-201997751;chr2:201981205-201997751	chr2:201983625-201997751	chr2:201997502-201997573;chr2:201994226-201994869;chr2:201980827-201981204	chr2:201983214-201983624			2.24	12.50	1.05	4.44	16.67	2.90	0.00	0.00	0.00	0.36	1.79	0.00	0.00	0.32	0.34	0.24	1.41	0.10	20.00	1.05	2.08	0.70	2.63	0.00	9.09	1.23	0.00	0.91	3.70	0.26	4.90	1.14	20.00	0.55	1.41	0.31	10.79	1.14	-9.65	0.065769	0.204191
N	alternative_acceptor	AD000671.6,U2AF1L4	chr19	-	chr19:36235124-36235223;chr19:36235047-36235223	chr19:36235148-36235223		chr19:36235047-36235123;chr19:36235124-36235147	chr19:36235046-36235047;chr19:36235123-36235124		4.76	12.50	11.54	11.11	12.50	6.25	6.25	NA	9.09	NA	7.14	NA	7.14	NA	11.11	0.00	10.00	NA	14.81	8.33	5.56	9.09	16.67	14.29	16.00	0.00	8.82	5.00	16.67	10.53	0.00	8.33	13.33	10.53	11.11	8.33	12.91	2.38	-10.54	0.016108	0.506009
K	intron_retention		chr7	+	chr7:44805179-44805762				chr7:44805178-44805179;chr7:44805762-44805763		20.45	17.65	25.68	NA	20.00	NA	6.25	6.45	9.52	0.00	4.55	0.00	12.50	5.36	12.36	0.00	13.33	18.75	26.67	19.61	16.67	21.43	16.13	13.33	33.33	31.58	19.23	14.29	13.33	18.18	19.44	21.25	NA	33.33	23.91	20.41	17.65	19.52	1.88	0.946205	1.000000
K	intron_retention	MAN2C1	chr15	-	chr15:75649244-75650541				chr15:75649243-75649244;chr15:75650541-75650542		22.22	18.95	16.22	22.22	18.75	37.21	2.13	0.00	4.55	0.00	4.00	0.00	9.80	NA	22.73	5.88	4.76	0.00	14.49	21.74	14.00	18.18	14.10	17.24	25.93	15.79	20.00	28.57	10.71	16.13	12.90	23.40	23.73	20.83	16.36	14.29	16.72	15.79	-0.93	0.676358	1.000000
K	intron_retention	BRD7	chr16	-	chr16:50349870-50353112				chr16:50349869-50349870;chr16:50353112-50353113		100.00	100.00	95.45	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.71	100.00	100.00	91.67	97.14	100.00	100.00	95.83	100.00	100.00	100.00	93.75	100.00	100.00	100.00	NA	90.91	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.629122	1.000000
K	intron_retention	CD276	chr15	+	chr15:74005405-74006182				chr15:74005404-74005405;chr15:74006182-74006183		98.02	100.00	100.00	91.49	93.58	95.74	95.83	100.00	100.00	95.76	97.14	97.79	94.85	100.00	95.45	97.13	97.23	100.00	100.00	96.36	100.00	90.38	95.65	95.59	100.00	97.84	100.00	95.00	95.15	100.00	95.16	100.00	97.78	94.07	95.24	94.57	98.89	97.93	-0.96	0.984445	1.000000
N	jcn_only_AA	CORO7,CORO7-PAM16	chr16	-	chr16:4440448-4445289;chr16:4438633-4445289;chr16:4439278-4445289	chr16:4412133-4445289					8.62	0.00	0.00	NA	21.74	NA	11.49	8.89	7.89	9.52	8.54	11.54	10.28	9.20	10.53	9.68	8.86	6.67	NA	14.81	31.25	0.00	8.00	0.00	0.00	4.55	7.32	7.69	14.89	0.00	6.38	9.68	15.38	6.52	12.77	8.93	10.28	8.75	-1.53	0.717976	0.875250
N	alternative_acceptor	BLOC1S5-TXNDC5,TXNDC5	chr6	-	chr6:7882893-7884591	chr6:7883500-7884591		chr6:7882893-7883499	chr6:7882892-7882893		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.86	100.00	100.00	96.77	100.00	NA	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	98.41	98.46	100.00	100.00	100.00	0.00	0.194006	0.660713
N	jcn_only_AA	CIRBP	chr19	+	chr19:1274440-1274650;chr19:1274440-1274647	chr19:1274440-1277181		chr19:1274648-1274650;chr19:1274651-1277181	chr19:1274650-1274651;chr19:1277181-1277182		5.77	0.00	8.86	1.90	3.18	0.83	0.00	0.00	6.25	NA	0.00	NA	0.00	NA	7.41	0.00	0.00	NA	2.24	4.65	5.49	5.56	6.10	7.69	0.00	7.35	6.36	0.00	8.45	0.00	6.93	11.02	4.39	2.56	7.84	0.00	0.00	5.77	5.77	0.042399	0.663989
K	alternative_last_exon	SSSCA1	chr11	+	chr11:65338442-65340833;chr11:65338442-65338861	chr11:65338442-65339913	chr11:65340834-65341663;chr11:65338862-65339359	chr11:65339914-65340363			57.14	20.97	75.00	4.55	11.63	0.00	51.02	65.22	45.45	18.92	25.64	22.22	37.78	56.52	31.58	10.64	11.76	0.00	6.67	28.57	30.51	13.04	25.00	11.76	14.55	63.64	62.16	21.74	21.43	9.09	26.32	44.83	8.06	15.79	29.63	22.22	17.76	56.83	39.07	0.026636	0.217248
N	intron_retention		chr11	+	chr11:67165125-67165384				chr11:67165124-67165125;chr11:67165384-67165385		100.00	100.00	100.00	NA	100.00	93.55	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	93.94	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.608000	1.000000
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49950675-49951083;chr19:49950678-49951083	chr19:49950725-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		83.78	94.52	90.48	82.61	85.71	88.89	96.15	93.75	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	95.83	100.00	87.88	87.88	88.89	80.00	82.61	NA	86.36	100.00	89.74	100.00	95.45	100.00	79.55	79.17	87.18	94.12	80.00	92.31	91.20	90.81	-0.38	0.782395	0.917646
N	alternative_acceptor	ARFGAP1,RBCK1	chr20	+	chr20:409234-409609;chr20:409234-409594;chr20:409234-409606	chr20:409234-409571		chr20:409572-409594;chr20:409595-409606;chr20:409607-409609	chr20:409594-409595;chr20:409606-409607;chr20:409609-409610		3.03	4.00	5.56	NA	9.09	6.25	0.00	3.12	0.00	NA	NA	NA	0.00	0.00	2.56	NA	NA	NA	0.00	2.78	5.26	NA	7.14	5.26	18.75	2.17	4.17	8.33	0.00	2.78	2.86	0.00	5.00	8.33	6.25	3.03	2.00	2.82	0.82	0.477510	0.777631
K	cassette	SNHG5	chr6	-	chr6:86387211-86387671	chr6:86387211-86387512;chr6:86387618-86387671		chr6:86387513-86387617			93.94	95.20	98.77	98.31	95.16	96.50	93.06	92.86	96.43	96.88	95.77	96.49	88.89	NA	100.00	87.50	91.67	NA	97.76	93.33	95.16	93.98	97.74	97.94	95.60	100.00	95.83	97.92	96.47	96.30	91.76	95.28	95.17	96.85	97.74	96.03	95.19	93.33	-1.86	0.960220	0.988948
K	intron_retention	IRF5	chr7	+	chr7:128588383-128588626				chr7:128588382-128588383;chr7:128588626-128588627		5.43	0.00	12.50	5.26	2.50	0.00	0.85	0.00	0.00	0.63	0.00	0.00	0.00	0.70	0.72	0.44	0.51	0.51	5.88	4.81	0.00	3.60	4.44	3.64	10.17	2.70	2.27	2.53	2.51	2.26	6.52	7.35	4.92	3.57	3.79	3.45	2.88	3.75	0.87	0.677310	1.000000
N	coord_cassette	GPS2,RP11-542C16.2	chr17	-	chr17:7216611-7217224	chr17:7216611-7216698;chr17:7216789-7216886;chr17:7217041-7217224		chr17:7216699-7216788;chr17:7216887-7217040			100.00	94.57	100.00	100.00	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	96.00	94.20	94.25	92.22	97.92	100.00	100.00	97.28	100.00	2.72	0.216053	0.643829
K	intron_retention	LGALS9	chr17	+	chr17:25970647-25972339				chr17:25970646-25970647;chr17:25972339-25972340		5.49	9.23	18.75	7.69	5.41	0.00	1.29	0.59	1.75	1.25	1.58	0.43	2.78	1.25	3.76	4.80	2.48	0.00	11.54	5.71	3.12	21.43	12.82	14.71	NA	9.59	11.11	17.24	9.80	8.18	4.44	8.00	3.70	24.44	16.33	12.50	3.70	4.96	1.26	0.919342	1.000000
K	intron_retention		chr16	+	chr16:50828340-50830234				chr16:50828339-50828340;chr16:50830234-50830235		1.33	0.00	5.80	2.22	2.70	0.80	4.76	4.84	4.60	2.70	4.76	7.25	0.00	4.05	4.60	3.23	3.57	1.96	3.12	2.86	0.00	2.38	2.63	4.55	0.00	0.00	1.59	4.00	0.00	2.01	4.35	2.97	3.70	7.69	2.70	3.68	1.56	3.46	1.90	0.765708	1.000000
N	jcn_only_AA	SIRT7	chr17	-	chr17:79872381-79872479;chr17:79872333-79872479	chr17:79872407-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		94.03	85.33	85.71	92.31	89.47	NA	100.00	100.00	100.00	100.00	91.67	NA	91.30	100.00	100.00	100.00	96.30	NA	87.10	92.50	93.10	90.91	94.44	84.62	88.89	87.50	84.00	100.00	89.29	100.00	91.23	84.04	75.47	89.74	90.24	88.10	88.00	93.27	5.27	0.144568	0.663989
K	intron_retention	FLII	chr17	-	chr17:18156773-18156857				chr17:18156772-18156773;chr17:18156857-18156858		2.04	0.00	1.79	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.89	0.00	2.63	10.00	6.52	8.33	0.00	0.00	2.78	5.26	0.00	0.00	6.82	NA	4.05	6.41	1.85	0.00	0.00	0.00	0.501178	1.000000
K	intron_retention		chr3	+	chr3:52522622-52523351				chr3:52522621-52522622;chr3:52523351-52523352		0.00	0.00	1.45	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	9.09	4.00	0.00	NA	0.98	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.601311	1.000000
K	intron_retention	ID3	chr1	-	chr1:23885511-23885617				chr1:23885510-23885511;chr1:23885617-23885618		12.12	0.00	4.65	3.12	3.01	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.02	0.79	0.00	0.00	7.79	4.65	0.00	0.00	NA	0.00	4.00	2.70	0.00	1.49	NA	10.37	4.27	2.80	2.19	1.35	0.00	0.00	5.89	5.89	0.142994	1.000000
N	cassette	DHRS4	chr14	+	chr14:24429213-24435491;chr14:24429213-24436419	chr14:24429213-24435140;chr14:24435193-24436419,chr14:24435193-24435491		chr14:24435141-24435192			NA	2.27	NA	NA	3.12	0.00	48.21	62.50	65.22	39.47	54.17	55.17	60.00	64.71	52.38	44.74	37.74	40.74	25.49	38.46	37.50	15.79	30.23	31.58	30.00	45.45	50.00	45.00	40.43	46.43	40.00	50.00	32.00	33.33	29.73	50.00	31.00	45.45	14.45	0.116199	0.709176
K	alternative_acceptor	FBXL19,HERPUD1	chr16	+	chr16:56976150-56977176	chr16:56976150-56977037		chr16:56977038-56977176	chr16:56977176-56977177		100.00	82.46	100.00	100.00	94.81	100.00	83.93	94.44	100.00	88.00	96.03	91.72	88.17	100.00	100.00	100.00	90.67	100.00	100.00	94.44	94.55	93.65	90.79	94.74	84.21	100.00	85.71	92.68	100.00	91.40	100.00	95.45	100.00	89.25	88.30	87.94	86.19	100.00	13.81	0.053751	0.570243
N	intron_retention	TNFAIP2	chr14	+	chr14:103589821-103590215				chr14:103589820-103589821;chr14:103590215-103590216		100.00	100.00	100.00	NA	NA	NA	70.27	100.00	100.00	89.93	75.00	92.83	82.93	94.34	94.20	91.71	100.00	93.10	NA	100.00	NA	100.00	100.00	97.74	100.00	100.00	100.00	94.55	89.29	100.00	100.00	100.00	NA	100.00	90.91	100.00	91.47	100.00	8.53	0.470925	1.000000
N	jcn_only_AD	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130931330;chr9:130929444-130931354	chr9:130929444-130929817		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.51	0.00	3.28	0.00	0.00	0.00	7.55	4.76	0.00	0.00	0.00	0.00	3.08	0.00	0.00	5.26	0.00	0.00	0.00	0.638159	0.818639
N	jcn_only_AD	SCYL1	chr11	+	chr11:65305760-65305912;chr11:65305654-65305912;chr11:65305559-65305912	chr11:65305796-65305912					91.67	96.97	89.80	94.52	93.65	92.99	95.12	93.94	94.23	96.61	100.00	100.00	96.97	90.00	91.49	96.30	97.78	100.00	95.04	98.00	96.99	91.43	95.83	100.00	87.86	97.37	91.53	90.62	90.62	96.23	90.91	91.03	91.89	94.44	88.10	98.15	95.08	92.81	-2.28	0.873369	0.936665
K	intron_retention		chr16	-	chr16:1507339-1507694				chr16:1507338-1507339;chr16:1507694-1507695		2.56	5.00	1.59	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	3.45	0.00	0.00	8.57	2.78	1.89	0.00	0.00	0.00	3.23	5.45	0.00	1.75	2.86	2.74	1.00	2.59	1.59	0.398148	1.000000
N	jcn_only_AA		chr11	+	chr11:67057685-67057800;chr11:67057685-67057778	chr11:67057685-67057792		chr11:67057779-67057792;chr11:67057793-67057800	chr11:67057792-67057793;chr11:67057800-67057801		96.08	88.24	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	94.12	NA	100.00	100.00	94.12	NA	100.00	NA	100.00	86.36	100.00	100.00	100.00	93.75	100.00	100.00	0.00	0.550055	0.783383
K	intron_retention	CYB561A3	chr11	-	chr11:61121465-61124001				chr11:61121464-61121465;chr11:61124001-61124002		1.75	0.00	4.24	NA	0.00	NA	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.30	0.00	2.27	0.98	0.89	0.00	2.94	5.26	0.00	0.00	0.00	1.41	1.89	0.00	5.00	2.72	2.34	0.00	1.58	1.58	0.388119	1.000000
N	jcn_only_AA	IFRD1	chr7	+	chr7:112108171-112112219;chr7:112108171-112112273	chr7:112108171-112110953		chr7:112110954-112112219;chr7:112112220-112112273	chr7:112112219-112112220;chr7:112112273-112112274		4.23	0.00	6.06	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.81	0.00	5.41	NA	0.00	6.45	5.26	0.00	5.13	2.48	3.26	0.00	1.74	2.63	0.00	0.00	0.00	0.00	0.192373	0.663989
K	intron_retention	APEH	chr3	+	chr3:49719239-49719319				chr3:49719238-49719239;chr3:49719319-49719320		4.00	0.00	3.70	10.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	4.55	3.23	5.88	4.00	2.70	0.00	0.00	0.00	0.00	0.998804	1.000000
K	alternative_acceptor	PIH1D1	chr19	-	chr19:49950675-49951083;chr19:49950725-49951083	chr19:49950678-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		8.11	5.48	7.14	13.04	7.14	6.67	3.85	6.25	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	6.06	6.06	5.56	20.00	13.04	NA	6.06	0.00	10.26	0.00	4.55	0.00	11.36	10.42	3.85	5.88	10.00	0.00	4.67	6.15	1.49	0.617288	0.854460
N	alternative_acceptor		chr7	+	chr7:100465856-100466363	chr7:100465856-100466116		chr7:100466117-100466363	chr7:100466363-100466364		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	96.30	100.00	100.00	100.00	90.62	100.00	100.00	0.00	0.363217	0.709013
N	alternative_donor	PLXND1,UQCRC1	chr3	-	chr3:129288801-129289721;chr3:129288801-129289628	chr3:129288801-129289432		chr3:129289433-129289628;chr3:129289629-129289721	chr3:129289628-129289629;chr3:129289721-129289722		0.00	3.23	2.21	NA	NA	NA	1.10	0.00	0.00	0.00	0.50	0.00	0.47	0.00	0.00	0.00	1.09	0.00	8.33	0.00	0.00	0.00	1.28	0.00	3.57	0.00	1.39	0.00	4.00	0.00	NA	0.00	7.14	2.63	3.39	1.64	3.40	0.00	-3.40	0.027785	0.322430
K	intron_retention	TSPAN4	chr11	+	chr11:865615-865693				chr11:865614-865615;chr11:865693-865694		10.17	5.45	7.43	0.67	2.03	0.00	0.85	1.11	1.54	0.00	0.00	0.00	1.12	0.00	2.22	0.00	0.36	0.00	6.44	4.88	4.33	1.94	3.58	0.00	6.61	4.17	4.32	0.55	2.08	0.00	4.26	5.51	6.45	1.12	1.62	0.00	5.95	4.21	-1.73	0.921972	1.000000
K	cassette	NDUFB5	chr3	+	chr3:179322728-179334770	chr3:179322728-179333770;chr3:179333838-179334770		chr3:179333771-179333837			76.00	69.23	85.37	61.54	85.71	NA	77.61	100.00	72.73	82.76	80.85	90.32	80.00	86.67	75.68	76.32	78.72	85.19	66.67	80.95	76.00	82.61	82.05	82.61	NA	65.38	86.11	63.16	82.35	75.00	72.22	81.08	76.19	87.50	83.33	83.33	76.19	78.47	2.28	0.296165	0.709176
K	jcn_only_AA	ZMYND15	chr17	+	chr17:4648074-4648164	chr17:4648074-4648140		chr17:4648141-4648164	chr17:4648164-4648165		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	8.33	4.76	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.719537	0.875250
N	cassette	DHRS4	chr14	+	chr14:24429213-24436419;chr14:24435193-24436419	chr14:24429213-24435491,chr14:24435193-24435491;chr14:24435627-24436419		chr14:24435492-24435626			NA	2.13	NA	NA	21.21	20.00	56.16	72.97	71.88	44.68	60.66	60.00	67.35	68.00	64.29	52.00	45.45	47.06	33.87	47.06	46.34	23.81	37.25	40.00	36.36	64.71	58.33	56.00	50.00	53.85	45.00	60.00	39.34	42.22	45.83	57.50	37.85	64.71	26.86	0.094231	0.658231
N	alternative_acceptor	BET1L	chr11	-	chr11:201777-205610;chr11:201226-205610;chr11:205470-205610	chr11:201742-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.678052	0.880186
N	cassette	MYO9B	chr19	+	chr19:17288696-17294637;chr19:17286551-17294637	chr19:17286551-17291735,chr19:17288696-17291735;chr19:17291850-17294637		chr19:17291736-17291849			100.00	100.00	98.33	NA	NA	NA	97.67	98.31	94.29	91.38	94.51	97.30	99.19	98.11	97.47	90.24	94.87	97.12	100.00	100.00	NA	97.56	97.75	97.94	100.00	94.20	95.12	94.74	100.00	100.00	100.00	100.00	NA	96.94	98.95	99.13	100.00	99.16	-0.84	0.391444	0.709492
K	intron_retention		chr11	+	chr11:64034025-64034656				chr11:64034024-64034025;chr11:64034656-64034657		4.00	8.65	9.09	3.57	3.23	5.00	0.00	0.00	2.78	0.00	1.96	NA	2.00	0.00	4.00	0.00	0.00	0.00	4.60	3.51	3.90	8.33	3.57	8.33	10.94	9.38	6.67	0.00	1.67	0.00	9.38	8.11	5.00	2.38	0.00	4.88	4.80	3.75	-1.04	0.611956	1.000000
K	cassette	RNF135	chr17	+	chr17:29311779-29324259;chr17:29298464-29324259	chr17:29311779-29314961,chr17:29298464-29314961;chr17:29315125-29324259		chr17:29314962-29315124			66.67	73.42	69.64	NA	73.13	NA	82.81	86.00	78.95	NA	76.00	NA	80.00	82.26	69.44	NA	80.00	NA	79.31	79.03	81.82	NA	87.10	NA	82.61	75.00	79.17	75.00	81.08	NA	64.15	64.29	72.73	73.08	84.88	80.00	79.66	77.02	-2.64	0.478629	0.771126
K	alternative_acceptor	MFSD7	chr4	-	chr4:680414-682781	chr4:680480-682781		chr4:680414-680479	chr4:680413-680414		100.00	95.24	91.67	100.00	91.67	100.00	96.97	100.00	92.86	94.12	94.44	NA	94.44	NA	100.00	88.89	100.00	NA	95.24	NA	85.71	83.33	100.00	80.00	100.00	100.00	NA	100.00	100.00	NA	90.91	92.31	94.87	92.31	94.12	100.00	95.24	100.00	4.76	0.546760	0.823069
K	jcn_only_AA	GPS2,RP11-542C16.2	chr17	-	chr17:7216417-7216530	chr17:7216444-7216530		chr17:7216417-7216443	chr17:7216416-7216417		100.00	96.54	96.91	96.85	97.12	97.88	100.00	98.15	96.36	98.39	98.75	97.78	98.44	97.18	96.97	98.25	97.89	96.61	93.87	97.56	96.69	96.00	97.83	100.00	96.62	95.92	98.13	100.00	97.80	97.14	94.92	94.40	95.98	96.20	98.02	97.14	96.58	97.37	0.79	0.742427	0.885252
K	intron_retention	AP1G2	chr14	-	chr14:24031625-24031712				chr14:24031624-24031625;chr14:24031712-24031713		4.00	0.00	6.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.45	3.33	NA	8.00	NA	0.00	2.78	0.00	NA	4.76	11.76	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	ZNF706	chr8	-	chr8:102214676-102217662;chr8:102216922-102217662	chr8:102213972-102217662					100.00	97.80	100.00	100.00	98.90	100.00	98.53	100.00	99.07	95.24	96.62	96.81	97.73	100.00	98.96	95.93	97.65	92.31	96.30	100.00	100.00	98.86	100.00	98.28	100.00	100.00	100.00	98.88	99.21	95.35	96.77	100.00	96.55	98.21	97.83	96.00	97.77	100.00	2.23	0.059191	0.663989
N	alternative_acceptor	SERPINB1	chr6	-	chr6:2836225-2836341;chr6:2836258-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2833934-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		37.30	0.00	31.18	0.00	0.00	0.00	28.57	28.50	30.00	19.28	16.22	11.56	31.58	25.18	27.17	31.88	0.00	16.67	33.33	0.00	27.94	0.00	29.73	0.00	57.58	32.53	29.41	0.00	0.00	0.00	14.85	14.74	27.66	0.00	0.00	0.00	30.07	26.84	-3.23	0.488449	0.787811
K	intron_retention	COASY	chr17	+	chr17:40716194-40716463				chr17:40716193-40716194;chr17:40716463-40716464		11.32	9.43	12.73	7.69	10.00	0.00	1.41	0.00	5.00	0.00	0.00	0.00	3.28	2.56	4.44	0.00	0.00	0.00	6.67	9.38	9.09	NA	6.82	10.34	13.51	9.52	6.00	16.13	8.11	9.26	11.11	20.93	10.34	4.55	11.43	16.98	8.05	9.45	1.40	0.397442	1.000000
K	cassette	BIN3	chr8	-	chr8:22488092-22494434	chr8:22488092-22494037;chr8:22494100-22494434		chr8:22494038-22494099			94.44	100.00	84.00	NA	82.35	NA	100.00	96.30	100.00	100.00	100.00	100.00	100.00	92.59	100.00	96.15	93.94	100.00	84.62	90.00	85.71	83.33	96.00	100.00	NA	100.00	75.00	100.00	91.67	100.00	100.00	96.00	NA	94.12	88.24	92.00	100.00	95.37	-4.63	0.892654	0.967641
N	jcn_only_AA	GAS2L1	chr22	+	chr22:40803333-40803429	chr22:40803333-40803416		chr22:40803417-40803429	chr22:40803429-40803430		100.00	100.00	90.00	NA	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	NA	100.00	100.00	100.00	90.91	100.00	NA	95.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	90.91	100.00	81.25	100.00	100.00	100.00	100.00	0.00	0.502767	0.756358
N	jcn_only_AD	SCCPDH	chr1	+	chr1:246927606-246929359;chr1:246927647-246929359	chr1:246927660-246929359		chr1:246927606-246927646;chr1:246927647-246927659	chr1:246927605-246927606;chr1:246927646-246927647		97.50	100.00	100.00	86.67	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	94.74	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	100.00	100.00	100.00	100.00	98.75	-1.25	0.289989	0.657607
K	intron_retention		chrX	-	chrX:153285050-153285127				chrX:153285049-153285050;chrX:153285127-153285128		5.00	0.00	0.00	NA	NA	NA	1.27	3.70	0.00	1.75	1.12	1.92	0.00	7.32	0.00	0.00	0.00	0.00	NA	4.76	NA	0.00	2.38	2.50	0.00	0.00	0.00	4.55	3.45	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.23	4.23	0.350747	1.000000
N	jcn_only_AD	CNOT10	chr3	+	chr3:32809639-32811378;chr3:32806302-32811378	chr3:32810967-32811378		chr3:32806302-32809638;chr3:32809639-32810966	chr3:32806301-32806302;chr3:32809638-32809639		0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.373901	0.657607
K	jcn_only_AA	SGSH	chr17	-	chr17:78188565-78188831;chr17:78188583-78188831	chr17:78188479-78188831		chr17:78188479-78188564;chr17:78188565-78188582	chr17:78188478-78188479;chr17:78188564-78188565		0.00	0.00	0.00	NA	NA	NA	2.56	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	3.85	0.00	0.00	NA	4.00	NA	NA	4.35	0.00	0.00	4.55	5.56	NA	0.00	NA	4.55	5.88	NA	0.00	0.00	0.00	0.00	2.00	2.00	0.224634	0.663989
N	cassette	TYMP	chr22	-	chr22:50965168-50967924;chr22:50965624-50968332;chr22:50965168-50968332;chr22:50965168-50967564;chr22:50965713-50967924;chr22:50965713-50968332	chr22:50965713-50966016,chr22:50965168-50966016,chr22:50965624-50966016;chr22:50966147-50967924,chr22:50966147-50968332,chr22:50966147-50967564		chr22:50966017-50966146			88.82	52.80	77.14	60.78	56.50	63.19	100.00	99.38	99.16	99.16	98.35	98.96	100.00	99.64	99.17	98.60	98.99	99.76	81.04	95.55	90.40	84.82	79.75	90.00	74.53	97.22	93.79	94.19	88.79	95.39	88.98	91.61	65.24	79.86	81.31	87.02	77.78	96.38	18.60	0.094039	0.658231
K	intron_retention	COG1	chr17	+	chr17:71203879-71204452				chr17:71203878-71203879;chr17:71204452-71204453		92.86	87.50	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	81.25	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	94.74	100.00	100.00	0.00	0.953896	1.000000
K	intron_retention	ENY2	chr8	+	chr8:110346632-110348356				chr8:110346631-110346632;chr8:110348356-110348357		30.95	43.14	27.27	17.65	35.00	24.00	28.89	28.00	37.50	26.53	39.22	33.33	33.33	32.56	35.71	32.20	41.18	32.00	18.52	19.51	23.08	25.93	30.43	27.59	40.91	23.81	31.58	34.38	36.73	29.79	15.79	17.65	19.44	42.42	29.03	31.82	31.11	25.91	-5.20	0.605679	1.000000
K	intron_retention	TMUB2	chr17	+	chr17:42266460-42266574				chr17:42266459-42266460;chr17:42266574-42266575		94.44	100.00	98.00	NA	92.31	NA	95.35	92.98	93.48	100.00	96.77	100.00	97.92	93.42	95.74	95.24	96.55	90.91	NA	91.67	NA	NA	89.66	100.00	100.00	89.19	95.92	100.00	96.43	100.00	100.00	96.55	NA	100.00	89.66	100.00	98.96	93.20	-5.76	0.070079	1.000000
K	intron_retention		chr3	+	chr3:52543338-52543885				chr3:52543337-52543338;chr3:52543885-52543886		3.08	14.66	4.29	NA	5.26	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.29	0.00	0.00	0.00	0.18	0.00	7.14	2.00	NA	0.00	1.12	0.00	4.77	0.00	0.00	0.00	1.38	0.00	0.00	0.00	4.84	0.60	0.38	0.00	4.80	0.00	-4.80	0.208358	1.000000
K	intron_retention	MVB12A	chr19	+	chr19:17531444-17533140				chr19:17531443-17531444;chr19:17533140-17533141		9.76	7.27	21.21	NA	8.33	NA	0.00	0.00	3.57	0.00	3.12	0.00	1.67	4.17	6.45	0.00	0.00	0.00	8.70	4.00	10.00	NA	5.26	NA	20.69	5.26	5.88	NA	4.76	8.33	4.55	15.38	12.50	NA	5.88	11.76	7.98	4.36	-3.62	0.813401	1.000000
K	cassette	DPM1	chr20	-	chr20:49557493-49558567;chr20:49557471-49558567	chr20:49557471-49557641,chr20:49557493-49557641;chr20:49557747-49558567		chr20:49557642-49557746			5.41	0.00	7.14	4.00	2.50	0.00	3.12	2.50	4.17	6.25	3.85	6.52	6.12	5.56	3.51	6.10	4.94	5.56	0.00	10.81	5.41	4.08	5.00	5.13	7.14	2.27	4.08	2.78	4.26	3.03	4.35	3.92	0.00	3.08	1.59	1.92	1.56	4.88	3.32	0.218103	0.709176
N	jcn_only_AA	SMG9	chr19	-	chr19:44238600-44241748;chr19:44240731-44241748	chr19:44238648-44241748		chr19:44238600-44238647;chr19:44238648-44240730	chr19:44238599-44238600;chr19:44238647-44238648		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	DDIT3	chr12	-	chr12:57911208-57911488;chr12:57911192-57911488;chr12:57911379-57911488;chr12:57911326-57911488	chr12:57911222-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		68.18	74.07	74.42	84.62	81.25	80.00	89.29	82.22	85.83	90.00	85.71	NA	83.33	78.67	80.00	88.24	NA	NA	69.09	77.32	70.83	77.78	82.35	80.77	70.00	77.30	76.09	85.00	82.14	86.36	69.16	66.07	72.53	79.17	65.91	81.25	73.30	77.31	4.01	0.825996	0.929528
N	coord_cassette	HK3	chr5	-	chr5:176317732-176318388	chr5:176317732-176317822;chr5:176317943-176318037;chr5:176318281-176318388		chr5:176317823-176317942;chr5:176318038-176318280			100.00	92.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.647127
K	intron_retention	CUEDC2	chr10	-	chr10:104183936-104184020				chr10:104183935-104183936;chr10:104184020-104184021		5.45	12.62	11.93	12.00	11.25	11.36	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	1.49	2.56	1.61	0.00	4.17	9.59	5.61	4.76	9.68	17.39	0.00	8.86	8.18	14.29	9.43	11.11	8.42	8.55	7.53	9.09	9.68	14.29	2.73	6.94	4.21	0.964659	1.000000
N	cassette	CTDP1	chr18	+	chr18:77478017-77513651;chr18:77478017-77496354	chr18:77478017-77488906;chr18:77489070-77496354,chr18:77489070-77513651		chr18:77488907-77489069			50.00	54.29	43.59	NA	67.74	NA	87.50	61.90	78.26	70.27	82.61	70.83	60.87	64.71	70.83	76.67	72.73	70.00	38.89	50.00	40.00	64.71	62.50	84.62	NA	52.38	60.00	77.78	84.21	73.91	21.21	36.11	44.44	61.11	58.33	62.50	54.29	51.19	-3.10	0.517473	0.794646
N	alternative_donor	C19orf38	chr19	+	chr19:10961184-10966940	chr19:10961244-10966940		chr19:10961184-10961243	chr19:10961183-10961184		100.00	85.71	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
K	alternative_donor	NRP2	chr2	+	chr2:206548088-206562267	chr2:206550547-206562267		chr2:206548088-206550546	chr2:206548087-206548088		0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.34	0.00	0.00	0.00	NA	3.45	0.00	2.22	0.00	0.96	0.00	2.44	0.00	0.00	0.00	1.45	6.25	2.44	0.00	1.14	0.00	0.71	0.00	1.22	1.22	0.108907	0.520337
K	alternative_donor	EIF2AK1,TMUB1	chr7	-	chr7:6064433-6066358	chr7:6064433-6066065		chr7:6066066-6066358	chr7:6066358-6066359		0.00	0.00	1.56	NA	0.00	NA	0.00	3.23	0.00	0.00	0.00	0.00	1.32	7.14	1.45	0.00	1.25	0.00	0.00	3.85	0.00	7.14	0.00	0.00	NA	2.78	1.89	0.00	0.00	0.00	0.00	2.17	0.00	5.26	2.70	0.00	0.00	3.00	3.00	0.065549	0.440033
N	alternative_acceptor	CIB1	chr15	-	chr15:90775680-90776900;chr15:90776441-90776900;chr15:90775578-90776900;chr15:90775660-90776900	chr15:90775560-90776900		chr15:90775560-90775577;chr15:90775578-90775659;chr15:90775660-90775679;chr15:90775680-90776440	chr15:90775559-90775560;chr15:90775577-90775578;chr15:90775659-90775660;chr15:90775679-90775680		97.18	99.11	90.68	100.00	97.02	98.55	100.00	97.14	99.22	100.00	100.00	100.00	98.77	100.00	96.23	99.16	99.13	100.00	97.22	94.90	95.73	95.71	93.92	95.08	94.57	87.78	90.32	95.06	94.41	93.98	92.55	94.74	96.15	95.83	95.24	94.83	98.00	96.02	-1.97	0.204693	0.668672
N	alternative_donor	P3H1	chr1	-	chr1:43212524-43212741;chr1:43212524-43212942	chr1:43212524-43212923		chr1:43212742-43212923;chr1:43212924-43212942	chr1:43212923-43212924;chr1:43212942-43212943		11.11	7.14	16.67	0.00	10.81	16.67	11.76	NA	25.00	10.00	13.04	NA	13.64	NA	22.22	9.09	15.38	NA	14.29	11.76	16.67	16.67	15.38	NA	13.89	16.67	18.52	20.00	11.54	14.29	4.55	4.17	8.20	0.00	8.33	11.11	12.70	11.43	-1.27	0.875074	0.969355
K	intron_retention	GSTK1	chr7	+	chr7:142961770-142962084				chr7:142961769-142961770;chr7:142962084-142962085		6.73	7.09	12.26	2.74	3.41	1.85	0.40	0.00	0.71	0.00	0.29	0.00	1.02	1.96	1.94	0.00	0.00	0.00	8.21	8.93	5.06	0.00	5.91	1.69	7.06	8.11	7.56	0.00	3.24	3.12	5.45	9.85	6.87	4.79	4.79	5.56	6.96	6.09	-0.88	0.954047	1.000000
K	intron_retention		chr22	+	chr22:40803333-40803416				chr22:40803332-40803333;chr22:40803416-40803417		16.67	18.52	25.00	NA	28.57	NA	3.57	0.00	0.00	6.25	4.65	0.00	2.27	0.00	15.79	NA	6.98	0.00	6.25	16.67	8.33	NA	32.14	26.67	43.75	14.29	19.05	10.00	25.93	7.69	NA	23.08	21.43	18.75	37.04	11.54	12.38	14.29	1.90	0.678531	1.000000
K	intron_retention	MOV10	chr1	+	chr1:113242605-113242840				chr1:113242604-113242605;chr1:113242840-113242841		19.12	15.52	25.00	18.52	18.60	21.02	4.55	3.64	2.53	0.00	0.00	0.00	0.00	3.76	6.25	11.11	0.00	10.34	22.22	22.22	19.75	38.46	20.00	35.94	14.71	11.87	15.79	33.33	20.83	22.65	30.26	30.66	13.95	30.23	18.75	34.85	14.33	15.50	1.17	0.865860	1.000000
N	jcn_only_AD	DNAJB12	chr10	-	chr10:74094376-74095360;chr10:74094376-74095591;chr10:74094376-74095543	chr10:74094376-74095537		chr10:74095361-74095537;chr10:74095538-74095543;chr10:74095544-74095591	chr10:74095537-74095538;chr10:74095543-74095544;chr10:74095591-74095592		81.48	69.77	58.82	60.00	71.43	75.24	59.26	74.29	55.81	68.89	59.18	79.41	73.17	74.36	70.83	72.73	69.57	72.00	67.07	76.32	77.97	76.00	60.00	80.77	81.13	69.70	73.47	61.29	68.75	73.47	74.19	75.00	58.90	80.56	71.43	66.67	68.42	74.33	5.91	0.115984	0.646283
K	alternative_acceptor	HNRNPK	chr9	-	chr9:86584296-86585076	chr9:86584356-86585076		chr9:86584296-86584355	chr9:86584295-86584296		59.11	44.19	60.53	46.63	50.18	43.81	53.27	59.64	59.90	43.30	41.26	48.92	49.60	61.59	51.27	58.55	39.22	46.81	44.83	56.73	47.09	57.25	58.84	57.65	34.15	61.54	58.30	57.49	52.23	54.01	53.07	51.23	38.32	58.47	57.51	59.29	44.51	59.38	14.87	0.002439	0.316050
K	intron_retention	LONP1	chr19	-	chr19:5696182-5696259				chr19:5696181-5696182;chr19:5696259-5696260		2.38	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.30	2.38	4.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.69	13.04	5.66	0.00	0.00	2.13	0.00	0.00	0.00	0.684289	1.000000
N	alternative_last_exon	CD14	chr5	-	chr5:140012796-140013115;chr5:140012566-140013115	chr5:140012778-140013115,chr5:140012878-140013115	chr5:140011313-140012565	chr5:140012654-140012777			99.24	98.25	99.46	NA	86.76	10.00	96.30	97.14	97.78	95.45	96.00	96.88	95.75	98.97	94.44	96.67	96.47	90.91	89.29	98.94	96.61	NA	97.30	92.86	61.54	97.87	99.44	94.12	96.84	91.67	95.24	98.92	92.68	96.30	98.67	96.77	94.22	98.41	4.19	0.174497	0.396864
K	jcn_only_AD	MIER2	chr19	-	chr19:308666-308821	chr19:308666-308800		chr19:308801-308821	chr19:308821-308822		100.00	100.00	91.30	NA	100.00	NA	100.00	100.00	88.24	94.12	100.00	NA	87.50	94.74	100.00	100.00	93.75	NA	NA	100.00	NA	84.62	92.11	NA	NA	100.00	100.00	NA	100.00	NA	90.91	100.00	100.00	94.12	100.00	90.91	100.00	100.00	0.00	0.843351	0.927560
N	jcn_only_AD	NOSIP	chr19	-	chr19:50063950-50093412;chr19:50063950-50067411;chr19:50063950-50082397;chr19:50063950-50077847	chr19:50063950-50083771		chr19:50067412-50077847;chr19:50077848-50082397;chr19:50082398-50083771;chr19:50083772-50093412	chr19:50077847-50077848;chr19:50082397-50082398;chr19:50083771-50083772;chr19:50093412-50093413		98.00	100.00	100.00	100.00	100.00	85.71	96.43	98.00	100.00	100.00	100.00	100.00	100.00	96.30	93.94	92.31	97.14	100.00	97.50	100.00	93.33	100.00	95.12	92.31	100.00	97.10	94.74	100.00	100.00	95.83	95.24	96.43	100.00	93.33	100.00	95.45	100.00	97.55	-2.45	0.129151	0.657607
K	jcn_only_AA	ENY2	chr8	+	chr8:110351620-110352672;chr8:110351620-110352719	chr8:110351620-110352717		chr8:110352673-110352717;chr8:110352718-110352719	chr8:110352717-110352718;chr8:110352719-110352720		83.33	82.33	84.29	87.97	88.26	87.96	82.27	87.78	87.07	86.67	86.70	85.85	88.30	85.52	86.26	88.29	87.91	89.70	87.22	87.16	88.58	87.20	89.08	85.42	76.35	87.57	88.89	90.29	88.03	92.55	84.62	85.56	86.59	84.77	84.09	89.70	84.46	86.34	1.88	0.311839	0.663989
N	cassette	TYK2	chr19	-	chr19:10463228-10464717;chr19:10461645-10464717	chr19:10461645-10463601,chr19:10463228-10463601;chr19:10463775-10464717		chr19:10463602-10463774			92.50	89.13	92.73	100.00	91.89	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	84.00	89.66	95.12	92.31	87.50	91.67	100.00	100.00	100.00	93.75	96.30	100.00	90.91	96.30	90.32	94.12	92.59	100.00	95.16	96.25	1.09	0.658820	0.874582
K	cassette	RP11-438J1.1,TATDN2	chr3	+	chr3:10320147-10320568	chr3:10320147-10320347;chr3:10320445-10320568		chr3:10320348-10320444			22.22	11.32	18.18	6.25	8.57	7.69	25.00	31.82	35.29	16.67	17.50	14.29	25.64	35.48	36.84	12.00	9.62	NA	15.79	25.93	15.79	20.00	10.00	20.00	NA	20.83	21.05	NA	14.29	NA	25.00	26.32	3.33	25.00	11.63	12.50	15.79	25.46	9.68	0.066440	0.622875
K	intron_retention	CTC-490E21.12	chr19	+	chr19:41307321-41312459				chr19:41307320-41307321;chr19:41312459-41312460		9.90	4.76	7.50	0.00	3.85	3.57	2.20	2.60	1.41	1.59	1.89	0.00	1.41	0.00	4.84	1.06	0.00	0.00	8.06	6.41	3.17	6.12	5.60	8.96	14.63	10.84	3.53	8.89	2.30	4.00	10.94	7.69	9.43	11.76	8.24	7.69	6.41	8.16	1.75	0.957454	1.000000
N	alternative_donor	NAGK	chr2	+	chr2:71302737-71303733;chr2:71302741-71303733	chr2:71302773-71303733		chr2:71302737-71302740;chr2:71302741-71302772	chr2:71302736-71302737;chr2:71302740-71302741		91.55	96.63	91.67	90.48	94.37	91.18	92.44	92.76	97.73	92.86	95.08	96.88	95.24	92.12	94.59	89.09	92.50	96.30	90.00	84.15	90.00	96.15	92.50	88.24	93.51	90.91	93.55	94.74	95.45	95.89	85.71	88.46	89.61	95.12	95.16	96.67	92.97	91.23	-1.75	0.104940	0.511710
N	alternative_acceptor	MKLN1	chr7	+	chr7:131163437-131172365;chr7:131163437-131164911	chr7:131163437-131172441		chr7:131164912-131172365;chr7:131172366-131172441	chr7:131172365-131172366;chr7:131172441-131172442		0.00	33.33	17.65	0.00	12.50	27.27	15.79	18.52	0.00	11.11	4.76	8.33	0.00	0.00	4.17	7.69	5.00	NA	0.00	13.33	0.00	NA	14.29	NA	NA	8.70	20.00	0.00	18.75	5.88	14.81	9.09	11.76	26.09	0.00	9.52	11.76	11.02	-0.74	0.685051	0.881289
N	cassette	EIF3M	chr11	+	chr11:32605476-32610139;chr11:32605476-32611092	chr11:32605476-32608479;chr11:32608691-32610139,chr11:32608691-32611092		chr11:32608480-32608690			77.78	76.67	69.39	65.38	78.79	58.33	83.33	84.21	79.55	79.07	82.35	70.91	78.87	73.68	76.00	72.73	77.27	83.72	NA	87.50	84.00	81.03	84.31	77.19	NA	75.00	80.56	74.42	79.17	63.16	76.92	80.00	78.57	80.00	85.71	84.21	78.72	77.35	-1.37	0.947842	0.987421
N	cassette	PFDN5	chr12	+	chr12:53689726-53691828;chr12:53689726-53691832;chr12:53689676-53691828;chr12:53689424-53691832;chr12:53689424-53691828	chr12:53689676-53691633,chr12:53689726-53691633,chr12:53689424-53691633;chr12:53691709-53691828,chr12:53691709-53691832		chr12:53691634-53691708			81.60	83.40	86.72	87.21	89.76	87.62	98.53	100.00	98.12	98.34	98.48	97.42	98.64	100.00	97.67	97.95	98.48	98.36	86.96	81.46	87.18	88.93	89.26	89.51	87.80	89.86	86.84	97.25	96.62	97.92	82.04	84.38	81.00	87.74	88.42	90.00	87.38	85.95	-1.43	0.962896	0.990355
K	jcn_only_AD	MZT2B	chr2	+	chr2:130939371-130940199;chr2:130939404-130940199	chr2:130940026-130940199		chr2:130939371-130939403;chr2:130939404-130940025	chr2:130939370-130939371;chr2:130939403-130939404		97.92	95.92	88.37	95.73	96.05	97.50	94.89	100.00	97.73	97.50	97.92	98.85	96.26	100.00	97.67	97.62	97.66	97.33	96.48	100.00	95.98	94.12	94.97	95.83	95.06	100.00	95.74	100.00	95.77	96.03	97.30	95.00	96.42	98.41	94.05	96.91	96.09	100.00	3.91	0.000457	0.060858
N	jcn_only_AD	RNF167	chr17	+	chr17:4847763-4847852;chr17:4846815-4847852	chr17:4846237-4847852					6.67	2.67	0.00	3.45	0.00	0.00	0.00	0.00	2.70	1.72	1.03	0.00	1.05	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	12.20	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	1.85	0.53	0.00	-0.53	0.730830	0.860664
K	alternative_acceptor	DHX38	chr16	+	chr16:72143410-72144941	chr16:72143410-72144854		chr16:72144855-72144941	chr16:72144941-72144942		100.00	92.19	100.00	78.57	94.29	89.19	88.24	83.33	90.91	78.95	90.00	100.00	95.00	92.31	100.00	85.00	84.00	78.95	100.00	85.00	83.78	100.00	88.64	100.00	97.50	100.00	96.97	87.50	90.91	90.24	84.38	90.00	92.31	88.24	91.67	90.62	93.66	88.66	-5.00	0.378664	0.709013
K	intron_retention	PNKP	chr19	-	chr19:50365721-50365794				chr19:50365720-50365721;chr19:50365794-50365795		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.00	NA	0.00	0.00	3.45	7.32	2.63	4.55	4.76	0.00	0.00	0.00	0.00	0.612201	1.000000
N	alternative_donor	HMGN2	chr1	+	chr1:26800224-26800575;chr1:26800230-26800575	chr1:26800309-26800575		chr1:26800224-26800229;chr1:26800230-26800308	chr1:26800223-26800224;chr1:26800229-26800230		3.00	1.37	5.11	1.47	0.89	0.00	0.29	0.60	0.87	0.00	0.25	0.00	0.67	0.60	1.69	0.47	0.39	0.27	1.14	3.35	1.92	0.88	1.75	1.36	3.07	4.37	4.27	0.78	0.76	0.00	4.63	5.41	3.33	1.41	5.19	1.02	1.25	3.17	1.92	0.242881	0.612108
K	intron_retention	TSC2	chr16	+	chr16:2136873-2137863				chr16:2136872-2136873;chr16:2137863-2137864		10.00	3.45	8.57	8.33	5.00	9.09	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	NA	0.00	10.53	6.98	NA	3.70	0.00	12.82	0.00	9.68	8.33	2.86	7.14	8.70	4.44	3.28	6.25	8.33	12.00	1.64	9.35	7.71	0.768189	1.000000
N	alternative_acceptor	NF1	chr17	+	chr17:29592358-29652837	chr17:29592358-29641322		chr17:29641323-29652837	chr17:29652837-29652838		93.33	100.00	85.11	NA	100.00	NA	82.50	40.00	33.33	80.00	100.00	83.33	76.92	31.25	18.75	53.85	78.57	NA	100.00	90.00	100.00	NA	96.00	NA	100.00	100.00	100.00	NA	96.00	NA	100.00	94.87	100.00	83.33	96.55	80.00	100.00	91.66	-8.34	0.243862	0.699237
N	jcn_only_AA	ARHGEF10L,TRMT13	chr1	+	chr1:17965185-17966696;chr1:17965185-17966326	chr1:17965185-17965732		chr1:17965733-17966326;chr1:17966327-17966696	chr1:17966326-17966327;chr1:17966696-17966697		7.64	25.00	3.70	0.00	0.00	0.00	0.00	1.00	0.00	3.27	0.99	0.00	4.35	3.85	3.28	3.42	3.01	3.28	0.00	6.13	4.55	3.92	5.56	5.00	NA	9.52	7.87	7.22	0.00	5.69	4.23	0.00	0.00	7.32	5.75	4.49	0.00	5.18	5.18	0.928530	0.977297
N	cassette	STAC3	chr12	-	chr12:57638749-57640586;chr12:57638749-57641908;chr12:57638749-57642488	chr12:57638749-57638927;chr12:57638995-57642488,chr12:57638995-57641908,chr12:57638995-57640586		chr12:57638928-57638994			90.00	96.20	84.21	100.00	91.30	93.10	100.00	98.81	100.00	100.00	100.00	97.06	100.00	98.52	100.00	100.00	100.00	100.00	91.30	93.55	97.06	86.67	85.37	90.00	92.98	94.17	96.67	100.00	94.92	96.55	92.42	93.94	91.67	91.30	88.57	94.29	94.59	93.86	-0.73	0.725527	0.904118
K	alternative_acceptor	STRN4	chr19	-	chr19:47230825-47231150;chr19:47230804-47231150	chr19:47230949-47231150		chr19:47230804-47230824;chr19:47230825-47230948	chr19:47230803-47230804;chr19:47230824-47230825		0.00	0.00	3.23	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	NA	3.85	NA	0.00	8.33	6.25	6.67	7.14	12.00	6.67	5.88	0.00	9.09	0.00	NA	0.00	5.26	3.57	0.00	1.93	1.93	0.495371	0.791230
N	cassette	SAP30BP	chr17	+	chr17:73698652-73700835;chr17:73698652-73699887	chr17:73698652-73699390;chr17:73699452-73699887,chr17:73699452-73700835		chr17:73699391-73699451			98.04	94.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	95.89	97.98	100.00	100.00	95.00	100.00	100.00	100.00	100.00	95.71	95.83	97.83	98.53	99.20	100.00	100.00	0.00	0.284261	0.709176
K	cassette	HPS3	chr3	+	chr3:148885771-148889881	chr3:148885771-148888257;chr3:148888361-148889881		chr3:148888258-148888360			0.00	0.00	4.00	NA	0.00	NA	0.00	5.88	0.00	NA	0.00	NA	0.00	0.00	6.67	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.709176
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67810499-67810930;chr11:67810499-67810924;chr11:67810499-67810837;chr11:67810499-67810822	chr11:67810499-67811037					3.17	8.33	5.05	NA	5.26	NA	0.97	0.00	1.79	2.70	0.00	0.00	0.93	0.00	2.17	0.00	0.00	0.00	NA	5.81	0.00	4.55	0.00	6.25	0.00	1.87	1.79	0.00	2.13	5.26	6.25	3.85	9.09	0.00	2.70	4.00	0.97	2.52	1.55	0.671534	0.854354
K	alternative_donor	MAP4K4	chr2	+	chr2:102503700-102504239	chr2:102503724-102504239		chr2:102503700-102503723	chr2:102503699-102503700		12.99	15.09	14.10	19.72	17.02	15.85	15.62	14.29	15.38	22.22	16.98	16.90	14.29	15.79	20.41	17.22	20.79	15.30	13.73	13.85	17.65	16.50	12.50	15.23	10.00	18.87	22.86	15.52	11.94	14.84	11.96	13.16	8.77	16.93	20.22	16.03	14.01	14.07	0.06	0.290591	0.650093
K	intron_retention	APRT	chr16	-	chr16:88876249-88876477				chr16:88876248-88876249;chr16:88876477-88876478		0.00	2.63	0.00	6.41	4.76	2.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	NA	2.59	2.44	4.90	2.70	1.09	NA	0.00	1.61	2.68	0.00	0.00	0.00	2.60	1.75	3.19	1.10	1.80	0.00	-1.80	0.214397	1.000000
K	jcn_only_AA	MYO9B	chr19	+	chr19:17313113-17313653	chr19:17313113-17313650		chr19:17313651-17313653	chr19:17313653-17313654		70.10	70.00	61.90	76.92	62.90	NA	71.15	66.67	68.66	71.93	72.47	73.42	65.16	70.31	69.09	74.23	68.14	75.53	47.37	69.01	68.18	68.09	66.84	75.72	39.53	65.47	69.39	68.00	70.80	75.47	71.01	73.68	50.00	68.34	67.00	65.12	57.58	69.56	11.98	0.086556	0.663989
N	cassette	DHPS	chr19	-	chr19:12786957-12790270	chr19:12786957-12788104;chr19:12788211-12790270		chr19:12788105-12788210			100.00	100.00	100.00	NA	100.00	90.91	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	86.67	86.67	90.62	NA	92.86	NA	100.00	100.00	91.67	100.00	94.74	100.00	100.00	90.48	82.61	100.00	NA	100.00	100.00	100.00	0.00	0.483484	0.773418
K	intron_retention		chr17	-	chr17:79873558-79875490				chr17:79873557-79873558;chr17:79875490-79875491		5.41	6.02	9.09	0.00	5.88	NA	3.70	0.00	2.70	0.00	6.25	NA	3.33	4.76	6.52	0.00	0.00	NA	7.14	7.14	5.56	6.52	7.25	9.76	23.08	11.54	12.96	5.88	7.14	4.35	10.94	13.27	6.82	13.89	12.96	11.48	6.42	6.28	-0.14	0.965291	1.000000
K	cassette	FLNA	chrX	-	chrX:153580816-153581139	chrX:153580816-153580920;chrX:153581044-153581139		chrX:153580921-153581043			100.00	100.00	100.00	92.31	93.33	95.65	99.47	99.62	100.00	98.87	99.06	99.03	99.71	99.36	100.00	98.53	99.18	99.56	97.30	99.02	100.00	96.77	96.18	96.39	100.00	99.34	99.22	97.80	96.87	98.41	100.00	98.33	100.00	97.86	96.84	97.85	99.85	99.49	-0.36	0.765548	0.926838
N	cassette	MDFIC	chr7	+	chr7:114619837-114655741;chr7:114621477-114655741;chr7:114654180-114655741	chr7:114654180-114654516,chr7:114619837-114654516,chr7:114621477-114654516;chr7:114654588-114655741		chr7:114654517-114654587			4.17	4.65	6.78	10.26	11.11	25.00	2.63	5.41	2.14	6.01	4.97	5.96	2.46	9.09	7.06	6.78	4.12	5.13	11.11	11.11	5.26	7.89	11.36	8.47	11.76	8.00	4.44	21.05	10.61	10.23	18.75	6.38	11.76	10.00	8.45	7.59	7.88	8.54	0.67	0.492196	0.776514
N	alternative_donor	MIA3	chr1	+	chr1:222837491-222838650	chr1:222838309-222838650		chr1:222837491-222838308	chr1:222837490-222837491		1.08	0.00	1.59	NA	0.00	0.00	4.00	0.00	2.13	5.00	4.55	1.67	3.12	1.75	0.00	9.52	3.57	1.72	0.00	1.69	0.00	10.00	4.35	3.12	0.00	1.45	1.59	0.00	6.67	0.00	1.27	2.22	0.00	2.70	4.17	3.60	0.00	1.36	1.36	0.980917	0.994374
N	alternative_acceptor	ELL	chr19	-	chr19:18557287-18557557	chr19:18557291-18557557		chr19:18557287-18557290	chr19:18557286-18557287		100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.74	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	cassette	ZDHHC3	chr3	-	chr3:44970929-44974609	chr3:44970929-44974398;chr3:44974483-44974609		chr3:44974399-44974482			11.76	7.69	6.12	18.18	10.00	0.00	12.50	18.75	11.90	16.67	19.40	17.95	10.64	28.00	10.26	22.86	16.33	31.82	9.09	12.00	7.14	NA	5.88	16.67	0.00	12.90	2.38	13.33	3.23	13.33	6.67	15.38	16.67	4.35	3.45	8.82	9.87	12.45	2.58	0.174303	0.709176
K	cassette	NTPCR	chr1	+	chr1:233092190-233113908	chr1:233092190-233105654;chr1:233105865-233113908		chr1:233105655-233105864			91.67	100.00	96.00	NA	89.13	NA	90.32	NA	100.00	80.00	82.35	NA	94.83	100.00	92.86	92.00	88.64	100.00	91.30	100.00	93.62	100.00	100.00	NA	100.00	NA	92.31	NA	90.48	NA	100.00	95.74	92.68	100.00	95.45	100.00	93.75	100.00	6.25	0.297963	0.709176
K	intron_retention	RNF126	chr19	-	chr19:648976-649678				chr19:648975-648976;chr19:649678-649679		9.09	8.00	13.64	5.00	5.56	0.00	0.00	0.00	4.76	1.75	0.00	0.00	3.23	0.00	0.00	2.74	0.00	0.00	0.00	12.50	13.64	15.00	3.57	7.69	NA	NA	14.29	0.00	4.76	10.53	33.33	14.81	16.67	7.69	15.38	11.54	3.23	9.09	5.86	0.796097	1.000000
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3673779-3674093	chr20:3673821-3674093		chr20:3673779-3673820	chr20:3673778-3673779		8.62	7.14	3.33	NA	NA	NA	0.60	2.73	1.00	0.00	2.17	1.92	1.85	3.41	2.48	4.00	3.03	2.78	NA	8.89	0.00	0.00	0.00	10.29	15.15	4.68	3.12	9.09	3.85	6.41	12.20	6.25	NA	15.00	0.00	10.85	4.50	6.65	2.15	0.882674	0.960122
K	intron_retention	TBC1D17	chr19	+	chr19:50387817-50387915				chr19:50387816-50387817;chr19:50387915-50387916		66.23	4.46	52.87	12.50	15.38	12.50	9.38	88.64	51.16	33.33	28.00	50.00	5.13	92.59	72.15	36.84	44.44	63.64	4.35	70.18	23.68	51.85	49.28	72.73	0.00	82.14	40.58	51.61	19.15	57.89	26.92	23.08	3.26	28.57	46.38	60.00	4.40	76.16	71.75	0.001880	0.920759
K	intron_retention	EDC4	chr16	+	chr16:67915437-67915570				chr16:67915436-67915437;chr16:67915570-67915571		3.85	0.00	3.03	NA	5.56	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	4.76	0.00	8.33	5.71	21.43	0.00	8.00	7.32	0.00	0.00	NA	5.88	10.00	NA	0.00	3.12	3.03	0.00	4.30	4.30	0.412321	1.000000
N	alternative_donor	PPP6R2	chr22	+	chr22:50879456-50882294;chr22:50881753-50882294	chr22:50879385-50882294		chr22:50879385-50879455;chr22:50879456-50881752	chr22:50879384-50879385;chr22:50879455-50879456		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.51	4.08	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.698788	0.871943
N	alternative_acceptor	GRIPAP1	chrX	-	chrX:48831704-48832429	chrX:48831722-48832429		chrX:48831704-48831721	chrX:48831703-48831704		92.00	89.47	94.23	92.31	94.29	100.00	100.00	97.62	88.10	100.00	91.67	95.65	100.00	92.11	92.86	100.00	100.00	100.00	88.00	86.84	82.50	100.00	91.18	100.00	100.00	91.30	93.33	100.00	96.30	100.00	80.56	77.97	80.95	100.00	89.74	86.00	94.73	91.65	-3.08	0.479984	0.779404
K	intron_retention	BRD7	chr16	-	chr16:50354686-50355892				chr16:50354685-50354686;chr16:50355892-50355893		0.00	10.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	3.12	0.00	0.00	0.00	6.25	0.00	0.00	7.32	0.00	0.00	0.00	0.00	3.57	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.801406	1.000000
N	cassette	MFF	chr2	+	chr2:228207536-228220392;chr2:228212101-228220392;chr2:228205097-228220392	chr2:228205097-228217229,chr2:228212101-228217229,chr2:228207536-228217229;chr2:228217290-228220392		chr2:228217230-228217289			31.58	47.37	36.05	31.82	26.92	37.93	37.50	55.56	38.89	31.43	32.65	52.94	29.82	46.00	42.86	28.95	34.69	47.06	24.44	29.55	43.02	35.29	36.54	30.00	22.22	35.29	38.36	31.82	43.40	29.63	27.59	32.88	30.77	25.00	36.84	32.26	30.30	33.44	3.14	0.363374	0.709176
N	alternative_acceptor		chr11	+	chr11:46396005-46396157	chr11:46396005-46396153		chr11:46396154-46396157	chr11:46396157-46396158		100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	94.44	100.00	NA	93.55	NA	100.00	100.00	94.74	NA	96.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.743898	0.903518
N	jcn_only_AD	LRP1	chr12	+	chr12:57532365-57535156	chr12:57534166-57535156		chr12:57532365-57534165	chr12:57532364-57532365		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	NA	NA	NA	NA	0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	2.17	2.17	0.218928	0.657607
K	intron_retention		chr1	-	chr1:1139867-1140749				chr1:1139866-1139867;chr1:1140749-1140750		9.09	0.00	NA	5.22	7.89	1.64	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	8.06	9.38	10.53	0.00	0.00	NA	2.47	6.90	0.00	3.33	7.69	0.00	7.14	6.38	6.38	0.00	1.67	1.67	0.629122	1.000000
K	alternative_acceptor	ACADVL,SEPT9	chr17	+	chr17:7124378-7124856	chr17:7124378-7124837		chr17:7124838-7124856	chr17:7124856-7124857		3.36	3.03	5.49	0.00	2.38	NA	0.00	0.98	0.00	1.22	0.87	0.00	0.00	0.00	2.31	0.00	0.82	0.00	0.00	2.56	0.00	6.67	5.88	1.39	3.70	3.23	2.86	0.00	1.45	0.00	2.13	1.92	0.00	4.12	1.52	1.57	0.00	2.34	2.34	0.329274	0.709013
K	alternative_acceptor	MAP7D1	chr1	+	chr1:36643803-36644046;chr1:36643803-36644071	chr1:36643803-36644019		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		75.41	62.16	68.85	83.33	58.54	NA	69.57	76.92	73.33	60.00	83.33	61.54	76.09	72.34	60.53	74.14	80.85	86.67	81.25	83.02	76.19	91.30	75.93	73.33	100.00	66.67	70.49	61.11	86.11	81.25	84.00	80.70	70.37	84.00	79.59	86.49	73.23	76.16	2.93	0.976870	0.994346
N	alternative_donor	HLX	chr1	+	chr1:221054936-221055505;chr1:221054940-221055505;chr1:221054938-221055505	chr1:221054716-221055505		chr1:221054716-221054935;chr1:221054936-221054937;chr1:221054938-221054939	chr1:221054715-221054716;chr1:221054935-221054936;chr1:221054937-221054938		99.19	100.00	94.17	100.00	100.00	100.00	100.00	99.25	100.00	99.50	100.00	100.00	100.00	100.00	100.00	99.47	100.00	100.00	NA	97.96	98.39	100.00	100.00	97.60	100.00	97.69	97.50	98.68	100.00	98.90	98.00	95.45	NA	98.57	98.11	98.46	100.00	98.59	-1.41	0.017528	0.264212
K	intron_retention	RP11-295K3.1	chr11	-	chr11:1769350-1775032				chr11:1769349-1769350;chr11:1775032-1775033		10.39	18.18	5.80	15.00	33.02	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	34.43	13.64	2.17	18.18	28.81	12.24	46.34	3.12	8.82	7.69	27.78	0.00	14.00	5.08	19.48	20.00	19.72	4.29	18.83	6.76	-12.07	0.415079	1.000000
K	intron_retention	CD163	chr12	-	chr12:7632593-7633756				chr12:7632592-7632593;chr12:7633756-7633757		5.79	2.88	8.22	4.98	7.34	4.31	2.68	2.71	2.15	2.50	2.52	2.22	4.85	3.62	4.17	6.90	3.01	3.23	2.97	5.11	4.70	6.32	7.87	4.95	2.71	5.55	6.77	21.93	13.20	16.28	2.16	6.51	3.52	3.82	9.79	7.84	2.92	4.37	1.44	0.606173	1.000000
N	cassette	RILP	chr17	-	chr17:1551252-1552092	chr17:1551252-1551643;chr17:1551790-1552092		chr17:1551644-1551789			100.00	77.03	89.74	93.94	88.89	100.00	92.00	100.00	100.00	95.74	93.18	100.00	90.91	100.00	100.00	100.00	92.00	100.00	91.67	100.00	84.09	100.00	87.30	93.94	75.00	100.00	83.33	92.59	100.00	95.12	86.36	92.31	100.00	100.00	90.62	92.45	91.29	100.00	8.71	0.060985	0.617473
N	jcn_only_AA	SPG7	chr16	+	chr16:89620972-89622328;chr16:89620972-89623294	chr16:89620972-89622285		chr16:89622286-89622328;chr16:89622329-89623294	chr16:89622328-89622329;chr16:89623294-89623295		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	11.11	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	intron_retention	FIBP	chr11	-	chr11:65655198-65655404				chr11:65655197-65655198;chr11:65655404-65655405		3.03	0.00	2.44	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	0.00	0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.55	5.13	0.00	0.00	7.69	3.57	0.00	0.00	0.00	0.750136	1.000000
N	cassette	NQO2	chr6	+	chr6:3002521-3006701;chr6:3000320-3006701;chr6:3000320-3004728;chr6:3002521-3004728	chr6:3000320-3003902,chr6:3002521-3003902;chr6:3004024-3006701,chr6:3004024-3004728		chr6:3003903-3004023			2.74	0.00	4.12	3.23	3.31	2.17	0.00	5.56	7.69	3.70	5.41	8.70	2.33	2.63	10.34	4.44	3.23	3.03	0.00	7.41	10.00	4.76	3.81	0.00	0.00	7.84	0.00	3.12	2.80	0.00	10.00	7.69	7.69	5.56	4.55	8.77	0.00	6.48	6.48	0.031592	0.448471
K	jcn_only_AA	PTBP1	chr19	+	chr19:804209-808649	chr19:804209-804291		chr19:804292-808649	chr19:808649-808650		85.29	100.00	87.50	NA	NA	NA	90.91	92.31	91.67	89.91	90.40	90.91	92.91	87.84	96.20	100.00	92.52	94.52	NA	87.88	NA	83.33	81.48	92.86	85.71	88.89	100.00	85.71	85.71	NA	66.67	78.38	NA	78.26	80.77	88.52	91.91	87.86	-4.05	0.151408	0.663989
K	cassette	P2RX4	chr12	+	chr12:121660847-121666335	chr12:121660847-121661060;chr12:121661238-121666335		chr12:121661061-121661237			4.67	3.12	3.23	12.90	2.08	37.50	0.00	1.29	0.00	1.46	0.88	1.41	0.00	1.89	3.53	1.16	1.24	1.75	0.00	1.27	5.41	3.81	3.45	5.98	NA	4.07	0.00	3.57	0.00	2.86	3.42	0.00	7.69	3.77	3.37	5.52	0.00	2.65	2.65	0.723523	0.902847
N	cassette	EIF2A	chr3	+	chr3:150286080-150293435	chr3:150286080-150289744;chr3:150290317-150293435		chr3:150289745-150290316			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	86.67	100.00	100.00	100.00	100.00	98.36	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	NCOR2	chr12	-	chr12:124817011-124817675	chr12:124817014-124817675		chr12:124817011-124817013	chr12:124817010-124817011		81.13	78.72	79.41	70.59	80.00	NA	82.69	76.92	66.67	78.22	86.13	80.00	85.33	83.33	83.33	82.08	87.50	83.61	60.00	79.59	NA	88.00	79.20	77.27	74.07	80.00	77.78	80.36	79.09	81.48	87.50	77.78	85.71	78.18	82.35	76.84	80.70	80.56	-0.14	0.420248	0.691465
K	cassette	NMRK1	chr9	-	chr9:77692497-77698002	chr9:77692497-77693241;chr9:77693499-77698002		chr9:77693242-77693498			53.19	62.50	50.85	NA	66.67	NA	25.93	28.21	26.79	NA	23.53	25.00	21.62	38.78	32.14	NA	26.67	NA	33.33	43.14	55.00	NA	43.48	52.17	NA	46.48	48.28	38.46	30.00	45.45	48.28	55.10	NA	37.50	53.33	54.00	29.63	44.81	15.18	0.508847	0.789905
K	intron_retention	LMBR1L	chr12	-	chr12:49494430-49495032				chr12:49494429-49494430;chr12:49495032-49495033		16.22	17.14	20.59	NA	15.38	NA	0.00	4.65	6.38	NA	NA	NA	0.00	4.55	2.82	0.00	0.00	NA	18.18	22.73	8.33	NA	15.79	NA	NA	12.24	12.77	NA	NA	NA	14.29	20.45	21.43	0.00	21.43	22.22	17.14	13.27	-3.88	0.969466	1.000000
K	intron_retention	RTN2	chr19	-	chr19:45991965-45992105				chr19:45991964-45991965;chr19:45992105-45992106		4.65	0.00	4.76	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	4.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention		chr2	+	chr2:191818353-191819309				chr2:191818352-191818353;chr2:191819309-191819310		6.67	0.00	0.00	4.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.67	4.08	0.00	9.23	0.00	5.45	0.00	0.00	0.00	0.476392	1.000000
K	intron_retention	RPLP0	chr12	-	chr12:120636543-120636656				chr12:120636542-120636543;chr12:120636656-120636657		1.75	0.60	1.40	1.03	0.89	0.65	0.13	0.00	0.43	0.33	0.28	0.18	0.17	1.03	0.40	0.42	0.10	0.00	0.61	6.58	0.90	2.43	1.45	2.35	0.37	0.00	1.07	0.79	1.04	1.24	6.15	3.79	0.67	0.93	0.80	0.82	0.48	1.39	0.91	0.303293	1.000000
K	jcn_only_AA	BAG6	chr6	-	chr6:31611752-31611858	chr6:31611755-31611858		chr6:31611752-31611754	chr6:31611751-31611752		75.86	57.14	75.00	NA	73.33	NA	76.56	76.92	92.45	87.76	83.02	88.24	77.94	84.44	92.31	85.48	84.00	86.00	NA	82.14	85.71	82.61	84.21	81.08	100.00	83.33	78.38	75.00	91.67	85.71	72.00	71.79	NA	82.93	74.07	79.63	77.25	79.53	2.28	0.901088	0.966004
N	jcn_only_AA	INO80E	chr16	+	chr16:2011638-2011802	chr16:2011638-2011797		chr16:2011798-2011802	chr16:2011802-2011803		100.00	97.48	100.00	95.79	95.00	97.17	98.10	100.00	100.00	100.00	97.12	96.15	100.00	100.00	100.00	97.59	98.10	100.00	97.39	100.00	98.10	97.44	97.20	100.00	97.14	100.00	100.00	97.14	97.12	97.53	97.56	100.00	97.15	100.00	100.00	97.33	97.44	100.00	2.56	0.017794	0.537091
K	intron_retention	DOK1	chr2	+	chr2:74782796-74783020				chr2:74782795-74782796;chr2:74783020-74783021		17.50	13.04	22.64	NA	18.18	NA	5.00	3.23	0.00	NA	17.86	NA	11.36	6.45	0.00	NA	8.70	NA	13.04	7.69	13.64	NA	25.64	NA	25.00	6.38	12.73	NA	13.64	NA	13.04	15.91	8.70	13.33	23.08	20.00	12.20	7.07	-5.13	0.982650	1.000000
K	intron_retention	NAP1L1	chr12	-	chr12:76441499-76442200				chr12:76441498-76441499;chr12:76442200-76442201		15.38	8.70	16.67	8.26	7.89	4.55	40.85	33.33	35.29	54.35	51.52	57.58	38.03	35.29	31.11	35.62	67.50	54.55	7.53	17.86	7.26	21.31	11.11	21.82	4.39	21.05	16.95	14.04	14.16	16.16	11.76	16.22	5.11	21.67	19.05	21.21	8.12	19.45	11.34	0.832700	1.000000
K	alternative_acceptor	EIF4A1,SENP3-EIF4A1	chr17	+	chr17:7481235-7481544;chr17:7481235-7481437;chr17:7481235-7481482	chr17:7481235-7481418		chr17:7481419-7481437;chr17:7481438-7481482;chr17:7481483-7481544	chr17:7481437-7481438;chr17:7481482-7481483;chr17:7481544-7481545		5.29	6.05	9.04	2.99	2.76	1.89	0.54	0.44	1.04	0.55	0.48	0.25	0.28	0.35	0.91	0.50	0.59	0.47	3.29	3.79	2.47	4.60	6.02	4.06	3.35	4.06	4.76	1.36	3.04	2.25	8.55	8.84	6.28	3.16	4.78	2.39	3.32	3.92	0.60	0.790967	0.922673
N	alternative_last_exon		chr19	+	chr19:49842194-49842914;chr19:49842194-49843507	chr19:49842194-49842586	chr19:49843508-49843863	chr19:49842587-49843462			90.20	78.57	82.86	88.46	79.17	71.05	100.00	92.11	100.00	100.00	92.86	100.00	100.00	87.23	NA	100.00	100.00	90.00	80.28	88.57	86.21	87.50	84.48	93.33	57.62	86.89	82.35	91.67	88.06	93.33	80.65	72.97	61.73	75.00	77.78	80.00	79.42	87.90	8.48	0.339358	0.535374
K	intron_retention		chr20	-	chr20:5098311-5099255				chr20:5098310-5098311;chr20:5099255-5099256		6.12	0.00	2.31	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	1.54	0.00	0.00	0.00	0.00	3.85	2.63	0.00	3.03	NA	0.00	0.00	3.61	2.94	1.12	0.00	4.88	3.81	3.66	0.00	2.11	0.00	0.00	1.93	1.93	0.475454	1.000000
N	alternative_donor	CPT2	chr1	+	chr1:53678489-53678935;chr1:53676923-53678935	chr1:53676992-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		84.00	96.88	86.84	NA	100.00	NA	93.75	100.00	83.87	88.24	86.84	NA	100.00	100.00	100.00	100.00	87.50	NA	84.62	84.62	91.67	80.00	92.00	NA	92.86	89.66	86.05	80.00	80.77	73.33	93.33	87.50	92.86	95.24	90.00	84.85	93.31	91.50	-1.81	0.674174	0.857467
K	jcn_only_AD	C18orf8	chr18	+	chr18:21109263-21109598	chr18:21109387-21109598		chr18:21109263-21109386	chr18:21109262-21109263		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	5.88	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.58	2.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.241357	0.657607
K	intron_retention	CTDNEP1	chr17	-	chr17:7147271-7147507				chr17:7147270-7147271;chr17:7147507-7147508		91.46	81.19	81.73	90.38	90.86	88.80	86.84	88.24	87.36	89.47	88.24	86.67	81.82	100.00	86.84	88.42	86.05	80.77	90.28	97.96	96.00	97.73	96.67	97.14	89.03	88.89	100.00	96.77	96.62	92.75	93.75	95.29	95.69	100.00	96.40	92.86	87.94	92.60	4.67	0.138345	1.000000
K	intron_retention	CDK11A,RP1-283E3.8	chr1	-	chr1:1635064-1635262				chr1:1635063-1635064;chr1:1635262-1635263		8.47	16.44	10.94	6.67	4.65	12.82	0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	0.00	8.33	0.00	0.00	8.33	7.84	15.62	12.50	12.50	15.79	14.29	14.29	5.45	9.52	9.38	17.24	10.61	12.62	7.89	11.11	11.11	14.00	8.11	8.16	0.05	0.989128	1.000000
K	jcn_only_AA	DYNC1I2	chr2	+	chr2:172602438-172604288	chr2:172602438-172604285		chr2:172604286-172604288	chr2:172604288-172604289		91.84	88.89	95.38	85.19	89.80	90.62	91.60	93.18	95.74	96.32	93.48	96.09	93.40	92.00	90.82	95.28	94.12	92.86	93.55	91.49	93.98	91.23	93.67	87.50	100.00	94.25	95.08	88.76	89.72	91.89	90.24	84.31	85.71	90.54	90.54	93.18	92.50	91.92	-0.58	0.990719	0.997790
N	cassette	DDIT3	chr12	-	chr12:57910964-57911488	chr12:57910964-57911051;chr12:57911222-57911488		chr12:57911052-57911221			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.74	100.00	93.02	100.00	100.00	100.00	100.00	100.00	0.00	0.454476	0.754902
K	alternative_donor	ARSA	chr22	-	chr22:51066221-51066325;chr22:51066221-51066373	chr22:51066221-51066418		chr22:51066326-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		7.69	0.00	13.73	NA	15.79	NA	8.57	8.43	14.10	20.59	8.51	11.11	13.46	4.76	8.33	14.29	24.24	26.09	NA	9.38	9.09	16.67	13.21	6.90	0.00	7.04	10.53	0.00	13.16	12.50	6.90	10.26	15.38	16.13	3.23	7.55	8.57	7.37	-1.21	0.973782	0.994374
K	intron_retention	ZFAND2B	chr2	+	chr2:220073362-220073698				chr2:220073361-220073362;chr2:220073698-220073699		19.15	14.09	15.91	10.00	12.05	0.00	0.00	0.00	0.00	0.00	3.33	NA	2.00	0.00	0.00	0.00	2.56	0.00	8.13	7.69	7.35	6.25	14.58	8.33	10.42	17.39	21.95	6.25	19.05	7.69	12.12	12.12	7.27	16.00	9.76	9.52	7.70	9.90	2.20	0.884108	1.000000
K	intron_retention	TECR	chr19	+	chr19:14675671-14675760				chr19:14675670-14675671;chr19:14675760-14675761		3.23	1.99	0.00	0.00	1.70	0.86	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	1.37	3.23	2.07	1.22	8.59	0.00	3.64	0.00	1.45	0.80	0.00	4.00	4.41	0.00	3.39	2.06	2.90	0.00	-2.90	0.411644	1.000000
K	intron_retention	NDUFS7	chr19	+	chr19:1391050-1391117				chr19:1391049-1391050;chr19:1391117-1391118		0.00	1.21	4.00	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.69	0.00	0.71	6.90	0.00	0.00	1.60	0.00	0.70	0.00	2.17	0.00	0.00	0.00	3.70	2.22	1.15	0.00	2.78	0.00	0.70	0.00	-0.70	0.672341	1.000000
N	jcn_only_AA	DRAM2	chr1	-	chr1:111674191-111680144	chr1:111674697-111680144		chr1:111674191-111674696	chr1:111674190-111674191		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	13.21	10.81	8.62	9.52	13.86	15.38	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.707070	0.870361
N	alternative_acceptor	DDIT3	chr12	-	chr12:57911208-57911488;chr12:57911192-57911488;chr12:57911379-57911488;chr12:57911222-57911488	chr12:57911326-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		4.00	4.88	5.56	4.76	4.35	6.25	5.56	2.17	0.00	0.00	0.00	NA	0.00	2.56	2.33	NA	NA	NA	2.78	3.23	5.56	3.33	4.76	5.88	7.69	5.48	3.23	6.25	5.00	5.88	1.47	4.88	5.80	3.03	3.23	4.17	5.22	2.90	-2.32	0.328953	0.709013
K	intron_retention	MMP24-AS1	chr20	-	chr20:33865101-33865192				chr20:33865100-33865101;chr20:33865192-33865193		81.25	81.08	86.21	80.00	75.76	80.65	64.00	84.62	78.38	77.78	69.57	77.59	83.93	86.79	85.37	81.69	79.75	84.00	73.33	80.00	60.00	89.29	82.93	85.29	78.38	85.71	80.77	65.85	85.71	78.05	89.29	80.00	76.92	85.71	82.76	77.97	77.65	85.16	7.51	0.090438	1.000000
N	alternative_acceptor	GADD45G	chr9	+	chr9:92220449-92220560;chr9:92220449-92220672	chr9:92220449-92220581		chr9:92220561-92220581;chr9:92220582-92220672	chr9:92220581-92220582;chr9:92220672-92220673		93.33	100.00	91.67	91.82	93.10	90.04	100.00	100.00	92.55	90.78	95.45	92.70	NA	94.92	96.77	91.53	85.71	91.43	93.75	96.49	93.88	93.53	88.46	91.76	95.35	96.97	90.91	91.76	84.38	89.45	96.43	95.31	93.33	90.62	100.00	91.60	95.35	96.46	1.11	0.942628	0.984632
K	intron_retention		chr7	-	chr7:150773920-150773999				chr7:150773919-150773920;chr7:150773999-150774000		10.20	11.15	13.73	14.68	15.48	16.89	0.00	0.00	6.67	NA	0.00	NA	4.55	NA	6.06	8.00	5.00	NA	9.48	21.43	10.22	18.92	13.89	15.38	8.23	0.00	7.27	10.00	16.36	16.98	28.21	18.84	10.88	14.71	9.62	12.07	8.86	10.20	1.34	0.747812	1.000000
K	intron_retention	MPG	chr16	+	chr16:133256-135399				chr16:133255-133256;chr16:135399-135400		8.57	3.60	9.76	7.14	4.29	6.25	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.03	4.17	3.54	6.67	4.76	0.00	9.01	9.38	5.26	0.00	2.90	0.00	10.00	4.00	4.55	0.00	4.17	8.00	4.08	6.37	2.29	0.973713	1.000000
N	alternative_acceptor	KLC1	chr14	+	chr14:104159972-104166991;chr14:104159972-104160068;chr14:104159972-104162455	chr14:104159972-104164368		chr14:104160069-104162455;chr14:104162456-104164368;chr14:104164369-104166991	chr14:104162455-104162456;chr14:104164368-104164369;chr14:104166991-104166992		17.14	18.03	17.95	8.70	15.00	3.57	NA	0.00	8.33	5.88	5.56	NA	13.04	6.25	13.33	4.00	9.52	8.33	13.16	13.04	23.33	14.29	16.28	9.52	16.67	12.50	35.29	14.29	14.71	10.53	13.04	17.65	15.38	13.33	13.89	16.67	15.38	12.77	-2.61	0.113722	0.605363
K	cassette	CTD-2323K18.1	chr15	-	chr15:75891023-75893478	chr15:75891023-75892977;chr15:75893232-75893478		chr15:75892978-75893231			0.00	0.00	0.00	NA	4.55	NA	3.45	0.00	0.00	9.09	5.56	NA	0.00	NA	0.00	0.00	5.88	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	4.55	NA	4.17	NA	0.00	5.00	0.00	0.00	5.26	NA	0.00	0.00	0.00	0.373901	0.709176
K	jcn_only_AD	STARD3	chr17	+	chr17:37818598-37819056	chr17:37818621-37819056		chr17:37818598-37818620	chr17:37818597-37818598		1.27	0.00	1.98	0.00	3.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	3.23	6.58	0.00	1.53	0.00	2.20	3.92	2.19	2.70	0.00	3.90	2.04	0.00	3.08	0.00	2.41	1.71	1.44	1.43	0.00	0.00	0.00	0.64	0.64	0.327020	0.657607
K	intron_retention	U2AF2	chr19	+	chr19:56180159-56180448				chr19:56180158-56180159;chr19:56180448-56180449		14.29	13.50	14.36	13.16	15.85	NA	0.00	1.54	0.81	0.00	0.00	0.00	0.71	1.33	1.52	1.82	1.34	0.00	17.07	10.89	12.50	11.22	14.10	13.10	18.42	8.11	14.19	7.58	7.14	11.11	16.25	18.84	12.96	9.84	12.67	20.51	13.23	9.50	-3.73	0.948173	1.000000
K	coord_cassette	CLEC4A	chr12	+	chr12:8276557-8288180	chr12:8276557-8278156;chr12:8278274-8281859;chr12:8281959-8288180		chr12:8278157-8278273;chr12:8281860-8281958			94.59	89.80	92.19	NA	96.43	NA	84.06	95.45	NA	100.00	100.00	100.00	93.83	95.92	NA	94.12	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	88.66	88.89	92.31	100.00	NA	98.31	100.00	100.00	100.00	100.00	93.83	95.92	2.09	0.314082	0.643829
K	alternative_first_exon	SLC7A8	chr14	-	chr14:23612414-23623467;chr14:23612414-23634493	chr14:23612414-23624374	chr14:23623468-23623659;chr14:23634494-23634645	chr14:23624375-23624667			4.76	0.00	9.09	NA	0.00	NA	2.03	2.17	7.69	0.00	0.53	0.00	1.76	4.17	NA	2.63	0.56	0.00	NA	4.55	NA	0.00	0.00	NA	0.00	6.67	11.76	NA	0.00	NA	NA	10.00	NA	3.33	0.00	0.00	0.88	4.55	3.67	0.006153	0.040073
N	jcn_only_AA	ARAP1	chr11	-	chr11:72423367-72423482;chr11:72423343-72423482	chr11:72423385-72423482		chr11:72423343-72423366;chr11:72423367-72423384	chr11:72423342-72423343;chr11:72423366-72423367		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	99.17	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.26	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.414863	0.688158
K	intron_retention	CLN3	chr16	-	chr16:28502882-28503034				chr16:28502881-28502882;chr16:28503034-28503035		0.00	0.00	0.00	NA	9.09	NA	1.82	0.00	0.00	2.70	3.51	0.00	0.00	4.17	7.69	4.17	5.88	0.00	NA	0.00	NA	0.00	0.00	0.00	5.71	0.00	0.00	0.00	0.00	4.55	0.00	0.00	NA	0.00	0.00	0.00	0.91	0.00	-0.91	0.995398	1.000000
K	alternative_donor	ATXN2L	chr16	+	chr16:28847807-28848048	chr16:28847812-28848048		chr16:28847807-28847811	chr16:28847806-28847807		67.44	90.38	89.13	73.33	91.30	47.62	55.56	53.33	51.85	30.77	38.89	NA	58.82	47.37	72.00	50.00	40.74	25.00	81.25	72.22	74.07	85.71	83.33	72.73	100.00	60.00	85.71	60.00	77.27	63.16	80.77	80.43	80.95	70.37	90.00	72.97	81.10	63.72	-17.38	0.136230	0.549706
K	intron_retention	LTA4H	chr12	-	chr12:96396843-96397615				chr12:96396842-96396843;chr12:96397615-96397616		5.36	2.47	4.67	1.89	2.79	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.41	4.41	1.31	0.00	1.60	0.00	3.64	0.00	6.56	0.00	1.28	0.00	4.00	1.83	2.38	0.00	3.05	0.00	2.40	4.00	1.60	0.820080	1.000000
N	cassette	RTCA	chr1	+	chr1:100739009-100741154	chr1:100739009-100740379;chr1:100740522-100741154		chr1:100740380-100740521			95.56	91.67	100.00	NA	100.00	NA	96.08	98.18	98.08	92.50	95.45	100.00	100.00	95.74	100.00	88.00	94.23	95.00	NA	97.44	100.00	100.00	100.00	100.00	NA	98.28	100.00	100.00	100.00	100.00	88.46	92.68	90.00	94.12	89.09	90.91	93.88	96.59	2.72	0.681647	0.883836
N	intron_retention		chr19	-	chr19:8615567-8616623				chr19:8615566-8615567;chr19:8616623-8616624		78.95	91.11	88.10	NA	83.33	NA	55.00	47.06	NA	NA	72.73	NA	53.85	53.33	NA	NA	NA	NA	NA	64.00	NA	NA	77.27	NA	100.00	73.33	80.36	NA	71.43	NA	NA	81.25	NA	75.00	100.00	NA	73.06	64.00	-9.06	0.741739	1.000000
K	alternative_acceptor	GPAA1	chr8	+	chr8:145138944-145139036;chr8:145138944-145139013	chr8:145138944-145139188		chr8:145139014-145139036;chr8:145139037-145139188	chr8:145139036-145139037;chr8:145139188-145139189		0.00	0.00	0.00	NA	0.00	NA	1.10	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	0.00	2.86	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.53	0.00	0.00	0.00	1.06	0.00	-1.06	0.467006	0.769369
K	alternative_last_exon	CSNK1A1	chr5	-	chr5:148884299-148885009;chr5:148876424-148885009	chr5:148880786-148885009	chr5:148871760-148876423	chr5:148880578-148880785			20.00	13.04	22.97	20.00	15.87	13.16	0.00	5.56	6.67	2.94	4.17	4.00	7.69	5.71	7.50	3.77	4.44	3.85	11.11	20.00	17.50	19.57	16.95	27.03	21.95	15.91	17.46	18.42	14.81	20.00	19.51	24.14	22.22	21.92	18.75	25.40	12.07	17.71	5.64	0.701633	0.811592
N	jcn_only_AD	MS4A7	chr11	+	chr11:60131340-60150601;chr11:60146090-60150601	chr11:60146138-60150601		chr11:60131340-60146089;chr11:60146090-60146137	chr11:60131339-60131340;chr11:60146089-60146090		85.71	94.59	88.66	NA	92.50	NA	87.66	87.59	92.65	92.51	92.76	91.94	90.93	87.46	83.33	89.89	93.77	92.63	83.33	88.60	90.00	84.62	86.47	91.11	NA	85.32	91.67	90.70	88.89	86.96	86.36	83.13	100.00	89.09	88.15	91.36	90.93	86.91	-4.02	0.194973	0.657607
K	cassette	ATP13A2	chr1	-	chr1:17312854-17313299	chr1:17312854-17312957;chr1:17313128-17313299		chr1:17312958-17313127			92.11	70.59	70.59	NA	64.29	NA	92.59	98.15	90.00	NA	100.00	NA	93.75	93.49	92.31	81.82	82.35	NA	71.05	88.89	86.49	NA	66.67	NA	73.08	91.11	88.24	NA	94.12	NA	97.22	NA	85.71	NA	75.00	54.55	79.39	92.80	13.41	0.037565	0.487987
N	alternative_acceptor	PLIN2	chr9	-	chr9:19108746-19118318;chr9:19116660-19118318	chr9:19116648-19118318		chr9:19108746-19116647;chr9:19116648-19116659	chr9:19108745-19108746;chr9:19116647-19116648		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.22	NA	93.33	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	NA	100.00	100.00	0.00	0.219439	0.671511
K	cassette	CORO1C	chr12	-	chr12:109046194-109048081	chr12:109046194-109046813;chr12:109046837-109048081		chr12:109046814-109046836			0.00	7.14	0.00	NA	0.00	NA	0.00	0.47	0.00	0.41	0.00	0.00	0.38	0.51	0.00	0.46	0.80	0.00	0.00	0.00	0.00	0.00	0.63	0.00	NA	0.00	1.52	0.00	0.00	0.00	0.00	0.00	NA	0.58	0.60	0.00	0.19	0.00	-0.19	0.400545	0.715834
K	intron_retention		chr19	-	chr19:1880115-1881233				chr19:1880114-1880115;chr19:1881233-1881234		8.22	1.66	8.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.00	1.04	7.14	1.25	6.38	2.20	12.50	0.00	6.56	2.20	0.00	0.60	0.00	7.89	5.56	2.42	3.64	3.17	6.17	0.80	6.85	6.05	0.110345	1.000000
N	jcn_only_AA	VAC14	chr16	-	chr16:70806076-70814692;chr16:70814518-70814692	chr16:70808303-70814692		chr16:70806076-70808302;chr16:70808303-70814517	chr16:70806075-70806076;chr16:70808302-70808303		0.00	0.00	0.00	20.00	0.00	0.00	0.00	2.50	0.00	6.25	1.10	0.00	2.94	0.00	0.00	4.81	0.00	5.13	10.00	0.00	0.00	6.82	3.80	6.12	0.00	0.00	0.00	6.25	0.00	0.00	5.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.637936	0.838192
N	alternative_donor	PHYH	chr10	-	chr10:105207326-105209156;chr10:105207326-105209325	chr10:105207326-105209143		chr10:105209144-105209156;chr10:105209157-105209325	chr10:105209156-105209157;chr10:105209325-105209326		78.57	78.57	77.78	NA	76.36	NA	70.27	57.14	70.59	80.00	68.18	NA	73.26	57.14	100.00	82.76	75.41	NA	73.33	76.92	81.82	NA	67.47	NA	100.00	NA	72.73	NA	73.68	NA	NA	54.55	70.00	72.73	66.04	NA	73.30	67.03	-6.27	0.226336	0.597576
K	cassette	RP11-705C15.2	chr12	+	chr12:9808576-9809516	chr12:9808576-9809163;chr12:9809294-9809516		chr12:9809164-9809293			18.18	25.00	15.38	11.36	15.15	13.33	47.37	45.45	29.09	46.15	28.00	40.17	57.14	NA	36.84	48.28	30.00	53.12	13.64	NA	31.43	33.33	19.23	22.58	18.18	25.00	35.71	30.00	33.33	34.07	21.43	20.00	29.17	60.00	28.57	31.58	27.09	23.21	-3.87	0.660454	0.874887
K	intron_retention		chr3	+	chr3:47891045-47891119				chr3:47891044-47891045;chr3:47891119-47891120		20.00	9.43	7.41	5.00	3.51	4.84	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.62	5.88	6.15	3.70	3.70	7.14	0.00	NA	5.41	0.00	2.27	2.22	47.37	14.89	12.50	0.00	0.00	4.17	4.31	12.94	8.63	0.545217	1.000000
K	alternative_acceptor	FIBP	chr11	-	chr11:65652608-65653000	chr11:65652658-65653000		chr11:65652608-65652657	chr11:65652607-65652608		87.88	100.00	100.00	90.00	97.14	95.65	100.00	100.00	92.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	97.22	95.00	100.00	96.67	97.30	100.00	97.14	100.00	94.44	92.31	90.32	NA	100.00	94.12	90.00	94.44	95.52	100.00	96.00	100.00	100.00	93.88	-6.12	0.061635	0.579641
K	intron_retention	CHMP2A	chr19	-	chr19:59063144-59063272				chr19:59063143-59063144;chr19:59063272-59063273		5.41	3.45	5.22	5.50	4.16	4.51	1.43	1.75	1.89	0.76	0.00	0.77	2.72	4.76	1.67	0.72	1.94	2.42	3.64	5.44	3.32	7.69	6.06	5.79	2.55	7.23	5.04	5.36	4.83	4.78	7.10	4.73	4.23	3.05	6.21	3.55	3.08	5.43	2.34	0.077092	1.000000
N	alternative_acceptor	VSIG4	chrX	-	chrX:65242009-65242682;chrX:65242459-65242682;chrX:65242252-65242682;chrX:65242343-65242682	chrX:65242530-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		3.74	1.22	6.58	0.00	0.57	0.00	0.68	0.00	0.00	0.30	1.01	0.27	1.29	1.61	0.00	1.43	1.62	0.37	0.85	1.49	2.38	0.00	1.05	0.00	0.53	0.00	6.02	0.00	1.28	0.28	0.00	1.49	1.42	0.38	1.35	0.46	1.03	0.74	-0.29	0.828293	0.940678
N	cassette	AIP	chr11	+	chr11:67250729-67256737;chr11:67250729-67257508	chr11:67250729-67254476;chr11:67254657-67257508,chr11:67254657-67256737		chr11:67254477-67254656			100.00	100.00	95.45	100.00	94.92	86.67	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	98.88	100.00	100.00	100.00	100.00	97.37	100.00	88.89	98.44	100.00	100.00	100.00	100.00	100.00	97.06	100.00	97.37	97.30	93.55	100.00	97.44	100.00	100.00	100.00	0.00	0.874095	0.956379
K	intron_retention	CSNK1D	chr17	-	chr17:80202708-80203851				chr17:80202707-80202708;chr17:80203851-80203852		11.32	13.33	16.36	3.45	3.70	2.70	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	1.52	0.00	8.82	6.12	2.17	8.33	10.64	7.14	8.00	4.00	14.29	1.85	4.69	1.43	10.17	9.23	9.09	5.41	7.27	5.77	8.41	5.06	-3.35	0.766071	1.000000
K	alternative_last_exon	ADSL	chr22	+	chr22:40760370-40762439	chr22:40760370-40760883	chr22:40762440-40763008	chr22:40760884-40761060			91.67	93.55	93.33	95.35	92.42	92.16	97.22	95.24	96.00	91.30	90.62	86.67	97.92	100.00	97.06	92.11	92.50	88.89	94.25	95.65	95.83	96.43	94.92	92.59	95.65	100.00	96.55	93.10	95.12	94.74	95.65	100.00	94.06	97.06	97.67	97.37	94.95	95.65	0.70	0.552695	0.699328
N	cassette	SLC50A1	chr1	+	chr1:155108853-155110454;chr1:155108468-155110036;chr1:155108853-155110036;chr1:155108873-155110454	chr1:155108853-155109303,chr1:155108468-155109303,chr1:155108873-155109303;chr1:155109428-155110036,chr1:155109428-155110454		chr1:155109304-155109427			58.82	38.89	43.48	35.71	47.37	NA	64.44	71.43	63.30	62.00	67.50	60.53	65.31	72.41	56.07	52.00	65.12	59.46	50.00	53.33	58.06	36.00	51.72	40.00	54.55	71.43	48.98	50.00	50.00	47.06	53.85	51.11	NA	31.58	47.06	37.25	54.55	65.12	10.58	0.187416	0.709176
N	jcn_only_AA		chr11	+	chr11:67810965-67811088;chr11:67810965-67811020	chr11:67810965-67811037		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		95.24	97.37	95.05	100.00	100.00	NA	97.33	100.00	100.00	100.00	98.51	100.00	97.04	98.07	99.07	98.15	97.58	96.59	92.86	94.16	100.00	91.84	96.08	100.00	100.00	94.53	95.97	98.41	97.06	93.10	96.05	95.19	100.00	91.89	97.30	95.05	97.35	95.64	-1.70	0.458263	0.720489
N	alternative_acceptor	RP4-622L5.2	chr1	+	chr1:32636808-32641976	chr1:32636808-32637679		chr1:32637680-32641976	chr1:32641976-32641977		100.00	100.00	100.00	NA	94.44	NA	100.00	NA	100.00	100.00	100.00	100.00	93.75	NA	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	93.75	NA	100.00	100.00	93.33	91.67	92.86	90.00	100.00	81.25	100.00	100.00	93.33	100.00	100.00	0.00	0.590097	0.844088
N	jcn_only_AD	ZDHHC9	chrX	-	chrX:71347561-71348039	chrX:71347561-71348013					96.97	100.00	NA	NA	100.00	100.00	100.00	96.30	100.00	NA	96.43	NA	100.00	100.00	NA	NA	100.00	NA	91.67	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.67	91.30	100.00	100.00	100.00	100.00	0.00	0.613974	0.809875
K	intron_retention	DCAF8	chr1	-	chr1:160187267-160187367				chr1:160187266-160187267;chr1:160187367-160187368		100.00	90.00	93.94	NA	90.91	NA	94.87	100.00	93.44	100.00	90.00	100.00	92.31	100.00	98.44	100.00	97.22	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	95.31	93.33	96.43	100.00	100.00	97.62	93.75	100.00	100.00	93.94	94.31	100.00	5.69	0.068288	1.000000
K	alternative_last_exon	PLEKHJ1	chr19	-	chr19:2233397-2233996;chr19:2230612-2233996	chr19:2233905-2233996	chr19:2230083-2230611	chr19:2233152-2233904			70.00	93.55	51.67	63.20	80.69	58.22	84.62	76.09	72.31	41.74	61.96	26.79	86.36	77.19	76.32	46.98	64.36	21.05	91.43	66.67	87.62	37.00	52.86	25.51	92.23	71.79	66.67	50.70	78.45	50.88	66.67	69.09	89.00	38.74	63.29	35.34	90.22	70.90	-19.32	0.000022	0.004070
K	intron_retention	MUS81	chr11	+	chr11:65633366-65633456				chr11:65633365-65633366;chr11:65633456-65633457		9.68	21.15	9.09	6.67	19.44	15.79	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	7.14	0.00	0.00	0.00	17.24	14.29	12.90	18.75	12.90	23.08	8.33	12.50	15.79	12.00	14.29	14.81	9.52	17.14	5.26	12.00	20.83	14.29	6.79	9.60	2.80	0.849398	1.000000
N	jcn_only_AD	ARSB,PDLIM7	chr5	-	chr5:176911192-176916393;chr5:176911192-176915068	chr5:176911192-176911839					0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.93	0.69	0.00	1.63	0.00	0.00	1.94	0.00	0.00	0.00	9.09	0.95	2.38	0.00	0.00	0.00	0.00	0.00	0.47	0.47	0.527212	0.754861
K	cassette	CHURC1,CHURC1-FNTB	chr14	+	chr14:65390845-65398855;chr14:65390845-65470966;chr14:65390845-65410016	chr14:65390845-65392727;chr14:65392799-65470966,chr14:65392799-65410016,chr14:65392799-65398855		chr14:65392728-65392798			85.37	95.24	94.44	91.43	89.06	88.37	86.00	86.44	86.76	86.21	81.13	82.05	92.16	87.76	87.69	81.25	86.05	80.00	93.94	81.58	81.13	80.95	94.74	82.05	88.89	91.89	82.05	80.00	85.37	86.00	84.31	88.33	89.29	87.50	90.24	90.57	90.72	85.91	-4.82	0.041342	0.508130
K	intron_retention	APLP2	chr11	+	chr11:129939914-129979444				chr11:129939913-129939914;chr11:129979444-129979445		76.50	74.60	78.43	NA	68.18	NA	73.79	71.23	68.55	67.62	67.03	63.85	72.63	70.99	76.11	74.52	70.62	66.77	81.82	78.98	78.12	78.79	73.10	75.63	77.27	74.19	75.65	80.00	74.59	78.12	84.21	78.67	81.25	69.05	74.30	73.31	75.94	75.34	-0.59	0.871614	1.000000
N	cassette	TRNAU1AP	chr1	+	chr1:28893926-28904011;chr1:28893926-28898378;chr1:28891347-28904011	chr1:28891347-28897687,chr1:28893926-28897687;chr1:28897851-28904011,chr1:28897851-28898378		chr1:28897688-28897850			100.00	100.00	100.00	100.00	96.72	94.23	96.15	100.00	100.00	95.65	100.00	85.00	100.00	100.00	91.30	93.55	100.00	94.12	94.12	100.00	95.31	100.00	98.41	91.30	92.42	96.30	100.00	100.00	98.08	100.00	92.68	100.00	96.00	100.00	100.00	97.67	96.08	100.00	3.92	0.355952	0.709176
N	jcn_only_AA	ARAP1	chr11	-	chr11:72404512-72404736	chr11:72404516-72404736		chr11:72404512-72404515	chr11:72404511-72404512		96.17	94.14	97.55	98.21	96.58	94.44	98.60	99.12	100.00	100.00	100.00	100.00	99.32	98.60	100.00	98.02	100.00	100.00	95.97	96.76	96.98	95.16	96.39	93.33	97.24	97.87	96.59	97.70	97.60	100.00	95.78	96.61	95.78	96.08	95.33	96.77	96.60	97.31	0.71	0.587057	0.809826
K	alternative_donor	AKR1B1	chr7	-	chr7:134136506-134143873	chr7:134136506-134143748		chr7:134143749-134143873	chr7:134143873-134143874		100.00	100.00	96.36	NA	100.00	NA	95.12	100.00	100.00	100.00	96.00	100.00	98.00	97.96	100.00	95.65	97.92	97.50	NA	93.55	100.00	96.55	100.00	97.50	100.00	100.00	94.00	96.97	96.08	100.00	93.10	95.65	NA	100.00	100.00	95.83	99.00	98.98	-0.02	0.645748	0.839864
K	intron_retention		chr2	+	chr2:220073071-220073147				chr2:220073070-220073071;chr2:220073147-220073148		11.90	9.33	20.00	4.76	10.00	5.26	5.00	0.00	5.88	0.00	0.00	NA	0.00	0.00	0.00	3.23	2.17	0.00	7.61	10.00	3.57	15.38	15.56	NA	0.00	3.57	10.00	7.14	9.30	15.38	15.62	20.00	10.13	9.68	15.56	21.05	6.30	6.79	0.48	0.999225	1.000000
N	alternative_donor	DNAJB11	chr3	+	chr3:186295857-186299159;chr3:186297894-186299159	chr3:186295590-186299159		chr3:186295590-186295856;chr3:186295857-186297893	chr3:186295589-186295590;chr3:186295856-186295857		98.77	100.00	96.55	100.00	100.00	100.00	99.14	98.77	100.00	99.00	99.12	98.31	99.25	98.86	98.48	99.14	98.74	99.17	100.00	98.78	100.00	96.72	98.88	95.56	100.00	96.74	98.82	98.46	98.65	98.65	98.61	97.73	100.00	96.59	95.00	94.02	100.00	98.77	-1.23	0.009678	0.213126
N	cassette	CCDC109B	chr4	+	chr4:110581522-110603737	chr4:110581522-110585445;chr4:110585551-110603737		chr4:110585446-110585550			100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	95.12	100.00	98.25	100.00	100.00	NA	100.00	NA	100.00	98.28	100.00	NA	100.00	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	100.00	0.00	0.236238	0.709176
N	jcn_only_AA	MICAL1	chr6	-	chr6:109767105-109767338;chr6:109767066-109767338;chr6:109767079-109767338	chr6:109767156-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		0.00	6.80	5.45	8.82	8.00	0.00	10.42	9.30	16.67	7.69	5.71	0.00	4.88	11.36	0.00	9.09	4.35	NA	7.41	5.13	8.06	4.35	5.17	0.00	7.48	8.97	0.00	13.04	11.76	10.53	6.12	0.00	0.00	5.88	9.09	0.00	7.11	7.54	0.44	0.772452	0.898707
N	alternative_acceptor	FBXO44	chr1	+	chr1:11721366-11722681	chr1:11721366-11721454		chr1:11721455-11722681	chr1:11722681-11722682		100.00	100.00	94.59	NA	100.00	100.00	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	100.00	100.00	96.08	NA	100.00	NA	100.00	100.00	95.24	NA	100.00	95.00	85.71	94.44	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	alternative_acceptor	MS4A7,RIC8A	chr11	+	chr11:213419-214287;chr11:213419-214229	chr11:213419-214205		chr11:214206-214229;chr11:214230-214287	chr11:214229-214230;chr11:214287-214288		5.26	0.00	1.67	0.00	1.89	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	1.69	0.00	0.00	0.00	1.61	0.00	1.69	0.00	1.82	2.90	8.33	0.00	0.00	5.17	0.00	0.00	0.00	0.901761	0.965927
K	cassette	WBP1	chr2	+	chr2:74685799-74686769	chr2:74685799-74686564;chr2:74686690-74686769		chr2:74686565-74686689			7.14	0.00	3.70	NA	4.76	NA	2.78	0.00	3.12	8.33	4.35	0.00	2.78	0.00	4.00	0.00	4.55	NA	0.00	0.00	0.00	10.00	3.23	NA	0.00	0.00	8.70	5.88	3.12	0.00	0.00	4.17	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.848062	0.949198
K	intron_retention		chr17	-	chr17:61776299-61776387				chr17:61776298-61776299;chr17:61776387-61776388		0.00	9.26	0.00	NA	3.33	NA	0.00	0.00	0.00	0.00	0.79	NA	1.72	0.00	0.00	0.00	2.08	NA	8.70	NA	4.26	NA	3.03	NA	NA	8.33	10.00	0.00	5.13	NA	NA	5.00	6.45	NA	0.00	NA	6.45	0.00	-6.45	0.639994	1.000000
K	intron_retention	DENND3	chr8	+	chr8:142202549-142202624				chr8:142202548-142202549;chr8:142202624-142202625		8.62	2.50	6.17	4.17	7.14	4.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	2.08	2.94	2.78	NA	0.00	4.55	4.26	0.00	3.45	4.35	NA	6.10	4.35	5.77	7.14	4.55	4.76	5.36	2.29	1.47	-0.82	0.756705	1.000000
K	cassette	MFSD10	chr4	-	chr4:2933193-2933551	chr4:2933193-2933281;chr4:2933391-2933551		chr4:2933282-2933390			100.00	100.00	92.86	95.65	90.32	88.89	98.25	100.00	96.88	91.67	97.83	100.00	96.08	100.00	97.30	100.00	95.56	95.45	92.86	100.00	100.00	90.00	90.00	93.75	100.00	93.75	100.00	96.15	100.00	100.00	100.00	83.33	92.86	91.67	96.15	96.67	97.16	100.00	2.84	0.210466	0.709176
N	alternative_acceptor		chr1	+	chr1:168206009-168206451;chr1:168206009-168207167	chr1:168206009-168208368		chr1:168206452-168207167;chr1:168207168-168208368	chr1:168207167-168207168;chr1:168208368-168208369		90.48	95.83	92.31	92.86	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	93.33	100.00	83.33	90.00	90.91	100.00	96.30	90.00	100.00	100.00	98.20	93.10	92.00	100.00	86.96	90.00	90.91	100.00	94.81	-5.19	0.068504	0.584083
N	jcn_only_AD	GMPR2	chr14	+	chr14:24707512-24707794;chr14:24706769-24707794	chr14:24707612-24707794					97.14	100.00	100.00	NA	92.31	NA	100.00	97.67	100.00	100.00	100.00	100.00	100.00	98.11	100.00	95.45	92.86	93.33	92.31	96.30	97.62	100.00	94.74	100.00	100.00	100.00	98.11	100.00	96.36	100.00	95.65	94.87	92.31	100.00	91.67	87.50	100.00	97.41	-2.59	0.981585	0.993198
N	jcn_only_AA	ATXN2L,MAP1LC3B	chr16	+	chr16:28846721-28846875;chr16:28846721-28846869;chr16:28846721-28846933	chr16:28846721-28846866		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		12.31	0.00	11.69	13.04	7.02	NA	15.15	11.11	9.32	11.11	14.89	15.15	24.05	24.32	23.28	17.86	24.03	16.67	16.67	11.86	13.89	10.00	11.46	11.43	0.00	17.54	9.26	17.31	7.02	20.51	21.15	17.31	16.67	25.40	25.93	22.62	15.91	14.93	-0.98	0.380010	0.663989
N	jcn_only_AA	TNNT1	chr19	-	chr19:55652706-55653224;chr19:55652671-55653224	chr19:55649443-55653224					3.54	0.00	0.00	3.77	6.06	6.59	NA	NA	NA	NA	NA	NA	NA	15.38	NA	NA	NA	NA	4.04	4.76	7.50	NA	0.00	0.00	3.00	3.57	0.00	0.00	3.33	4.17	0.00	NA	3.33	NA	NA	NA	3.17	3.57	0.40	0.348153	0.663989
N	cassette	CMTM7	chr3	+	chr3:32483506-32493883;chr3:32483506-32495732	chr3:32483506-32490945;chr3:32491045-32495732,chr3:32491045-32493883		chr3:32490946-32491044			93.94	100.00	86.05	NA	92.98	NA	97.86	100.00	100.00	97.22	99.32	100.00	97.18	100.00	97.06	93.10	94.31	100.00	100.00	92.86	96.00	100.00	93.33	NA	100.00	100.00	91.11	100.00	98.72	NA	NA	92.68	90.74	93.10	94.23	100.00	98.93	100.00	1.07	0.904704	0.971243
N	cassette	ADAM10	chr15	-	chr15:58889841-58902495	chr15:58889841-58891796;chr15:58891924-58902495		chr15:58891797-58891923			100.00	100.00	97.20	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	94.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	RTCB	chr22	-	chr22:32795747-32797733				chr22:32795746-32795747;chr22:32797733-32797734		1.07	0.00	2.38	0.00	0.00	0.00	0.00	0.95	0.29	0.90	0.00	1.02	0.00	0.80	0.00	1.27	0.00	0.30	0.00	2.09	0.00	0.00	0.00	6.04	0.00	2.93	1.64	1.96	0.00	1.86	2.70	4.44	4.76	6.90	6.67	4.97	0.00	1.58	1.58	0.574072	1.000000
K	jcn_only_AA	SUMO1	chr2	-	chr2:203075507-203079079	chr2:203075530-203079079		chr2:203075507-203075529	chr2:203075506-203075507		83.33	93.59	92.92	85.19	91.25	84.62	88.52	87.50	91.11	69.87	72.25	75.81	86.44	92.19	91.27	91.11	68.78	70.18	92.59	88.24	91.94	88.57	86.96	89.53	NA	86.36	91.13	83.61	93.58	85.25	93.59	90.48	93.55	92.24	90.68	89.80	92.59	87.87	-4.72	0.288141	0.663989
N	jcn_only_AA	CCDC130	chr19	+	chr19:13869825-13869913;chr19:13869825-13869924	chr19:13869825-13869930		chr19:13869914-13869924;chr19:13869925-13869930	chr19:13869924-13869925;chr19:13869930-13869931		10.00	0.00	6.67	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	20.00	6.25	0.00	NA	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.873291	0.951276
K	intron_retention	PPP1R12C	chr19	-	chr19:55604445-55604520				chr19:55604444-55604445;chr19:55604520-55604521		11.01	13.41	13.10	39.13	26.92	20.00	1.85	2.82	4.88	0.00	0.00	0.00	4.00	4.05	13.33	5.56	0.00	0.00	14.52	19.18	15.49	25.71	21.88	21.74	11.54	16.47	10.28	33.33	21.79	29.63	22.97	15.53	13.64	27.45	17.54	22.58	12.47	13.74	1.26	0.773462	1.000000
K	alternative_last_exon	ARL6IP1,RP11-1035H13.3	chr16	-	chr16:18800441-18805920	chr16:18804693-18805920	chr16:18800303-18800440	chr16:18802989-18804692			99.43	100.00	99.46	99.15	100.00	98.61	99.55	99.40	100.00	99.50	100.00	100.00	100.00	99.63	99.12	99.52	100.00	100.00	93.14	98.83	100.00	98.87	99.33	99.45	100.00	100.00	100.00	100.00	99.25	99.33	98.79	98.91	97.27	99.54	99.38	98.29	99.78	99.42	-0.36	0.409915	0.568000
N	jcn_only_AD		chr14	-	chr14:24736096-24736892	chr14:24736096-24736865		chr14:24736866-24736892	chr14:24736892-24736893		100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	96.43	91.30	100.00	100.00	93.48	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	93.10	100.00	100.00	100.00	100.00	100.00	0.00	0.174902	0.657607
K	intron_retention	BCL2L12	chr19	+	chr19:50172373-50173472				chr19:50172372-50172373;chr19:50173472-50173473		0.00	4.08	2.94	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	5.56	0.00	0.00	0.00	NA	2.56	1.72	4.00	NA	4.76	0.00	0.00	0.00	0.00	0.961007	1.000000
N	alternative_acceptor	SIRT6	chr19	-	chr19:4175109-4175676;chr19:4175149-4175676	chr19:4175211-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		10.00	5.88	4.55	9.09	13.64	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	12.50	11.76	11.54	9.09	6.67	NA	9.52	6.67	4.55	6.25	0.00	11.11	0.00	10.00	10.00	10.00	5.00	6.25	7.70	3.33	-4.36	0.622791	0.854460
N	alternative_acceptor	FBXW5	chr9	-	chr9:139835930-139835988;chr9:139835855-139835988	chr9:139835916-139835988		chr9:139835855-139835915;chr9:139835916-139835929	chr9:139835854-139835855;chr9:139835915-139835916		95.56	96.00	92.59	93.94	91.89	90.91	98.28	97.83	97.87	97.83	98.31	96.55	100.00	97.62	94.74	97.67	98.04	100.00	95.00	91.89	93.18	96.43	89.13	82.61	90.91	95.00	96.23	96.43	94.74	96.88	86.21	92.68	92.68	92.86	96.43	90.24	95.50	95.28	-0.22	0.534513	0.815239
K	alternative_acceptor	TCEAL3	chrX	+	chrX:102863602-102863970	chrX:102863602-102863965		chrX:102863966-102863970	chrX:102863970-102863971		82.61	100.00	90.91	NA	76.92	NA	75.00	75.00	87.50	78.57	83.87	NA	90.91	92.00	100.00	94.74	84.31	90.91	NA	77.78	85.00	90.00	83.33	70.00	100.00	91.30	90.00	87.50	88.24	72.73	73.33	86.96	NA	80.95	87.88	80.00	95.45	80.19	-15.26	0.221229	0.672462
K	intron_retention	USP9X	chrX	+	chrX:41089033-41089753				chrX:41089032-41089033;chrX:41089753-41089754		2.33	0.00	2.97	2.70	0.00	0.00	0.00	0.00	0.00	2.78	2.56	2.86	0.00	0.00	2.50	2.00	2.63	2.56	2.56	6.06	2.44	0.00	1.49	4.11	0.00	2.00	1.06	0.00	1.37	1.04	1.52	2.38	1.43	2.22	1.05	0.78	0.00	1.76	1.76	0.575428	1.000000
K	jcn_only_AA	SCP2	chr1	+	chr1:53480716-53493649	chr1:53480716-53493640		chr1:53493641-53493649	chr1:53493649-53493650		97.50	100.00	100.00	NA	95.12	NA	97.04	100.00	100.00	100.00	92.72	94.38	96.15	100.00	93.94	100.00	94.62	89.76	100.00	100.00	100.00	94.29	100.00	95.45	NA	92.54	96.19	100.00	95.24	100.00	100.00	95.92	100.00	96.85	100.00	96.92	100.00	100.00	0.00	0.846454	0.938257
N	jcn_only_AD	SDCCAG8	chr1	+	chr1:243637714-243652315;chr1:243651181-243652315	chr1:243589861-243652315		chr1:243589861-243637713;chr1:243637714-243651180	chr1:243589860-243589861;chr1:243637713-243637714		94.74	100.00	100.00	NA	93.33	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	91.67	72.73	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.657607
N	jcn_only_AD	ZFAS1	chr20	+	chr20:47895276-47895640;chr20:47895254-47895640;chr20:47894935-47895640;chr20:47895128-47895640;chr20:47893757-47895640	chr20:47893379-47895640		chr20:47893379-47893756;chr20:47893757-47894934;chr20:47894935-47895127;chr20:47895128-47895253;chr20:47895254-47895275	chr20:47893378-47893379;chr20:47893756-47893757;chr20:47894934-47894935;chr20:47895127-47895128;chr20:47895253-47895254		3.95	0.00	3.98	2.56	0.00	2.63	0.00	8.51	1.95	2.20	0.00	3.68	0.00	10.20	1.99	2.05	0.00	4.55	0.00	7.96	1.89	1.83	1.31	2.86	0.00	11.41	0.00	0.00	0.00	6.71	3.86	1.58	0.00	1.46	0.00	0.00	0.00	8.23	8.23	0.001913	0.128812
K	cassette	SMARCE1	chr17	-	chr17:38785246-38786965	chr17:38785246-38786459;chr17:38786539-38786965		chr17:38786460-38786538			8.45	4.12	5.60	3.66	4.24	5.67	0.00	2.56	3.17	2.61	1.53	3.94	3.54	4.23	2.79	5.22	4.32	3.74	4.13	9.46	3.47	3.64	4.24	6.85	5.62	3.95	4.92	3.53	4.00	5.14	12.35	8.87	5.23	6.33	4.12	4.90	4.12	6.34	2.21	0.123307	0.709176
N	jcn_only_AD	EHBP1L1	chr11	+	chr11:65348845-65349009;chr11:65348798-65349009	chr11:65348723-65349009		chr11:65348723-65348797;chr11:65348798-65348844	chr11:65348722-65348723;chr11:65348797-65348798		3.75	0.00	4.86	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	FXR1	chr3	+	chr3:180688147-180693909	chr3:180688147-180693100;chr3:180693193-180693909		chr3:180693101-180693192			28.57	29.82	21.74	21.62	24.66	16.98	22.45	27.08	22.06	18.37	36.36	19.05	28.89	17.74	28.05	24.00	22.95	17.07	31.43	23.21	27.78	26.19	26.23	17.02	19.35	25.37	30.38	24.39	26.98	18.18	18.87	15.62	22.09	20.27	22.73	16.13	25.67	24.29	-1.38	0.436704	0.742855
K	intron_retention	AP2A2	chr11	+	chr11:1006618-1008011				chr11:1006617-1006618;chr11:1008011-1008012		6.33	3.83	11.11	5.26	1.50	NA	0.00	0.00	0.00	0.00	0.59	0.00	0.73	0.00	0.00	0.00	0.53	0.00	3.33	7.69	2.38	2.70	4.65	6.25	4.67	5.36	4.35	6.67	1.29	6.25	8.11	6.82	2.24	2.90	3.82	7.41	2.79	5.85	3.06	0.594829	1.000000
N	jcn_only_AD	PFKL	chr21	+	chr21:45739295-45739966	chr21:45739299-45739966		chr21:45739295-45739298	chr21:45739294-45739295		94.29	97.06	98.00	100.00	100.00	NA	100.00	100.00	100.00	98.88	100.00	100.00	100.00	100.00	99.24	100.00	100.00	100.00	88.24	90.91	98.15	93.94	97.06	100.00	93.10	100.00	100.00	100.00	100.00	100.00	97.62	100.00	93.55	93.85	96.25	96.43	95.31	98.81	3.50	0.473186	0.721034
K	intron_retention	PLXNB2	chr22	-	chr22:50723095-50724228				chr22:50723094-50723095;chr22:50724228-50724229		3.90	4.17	3.90	NA	20.00	NA	0.00	0.00	0.00	0.00	0.54	0.00	0.82	0.00	0.87	1.27	0.00	0.00	12.50	1.35	0.00	0.00	6.82	3.85	9.84	0.00	2.63	0.00	0.00	NA	3.70	4.38	9.38	1.06	3.57	1.59	6.78	0.68	-6.10	0.297988	1.000000
K	coord_cassette	DHRS3	chr1	-	chr1:12632882-12640550	chr1:12632882-12638745;chr1:12638985-12639320;chr1:12639441-12640550		chr1:12638746-12638984;chr1:12639321-12639440			91.11	93.33	92.86	NA	90.48	NA	96.43	100.00	92.00	NA	97.40	NA	95.59	100.00	NA	93.75	91.55	NA	94.12	100.00	95.45	NA	91.43	NA	100.00	100.00	95.74	NA	100.00	NA	88.24	92.86	89.47	NA	100.00	NA	94.86	100.00	5.14	0.526883	0.733074
K	cassette	DBNL	chr7	+	chr7:44097459-44097727	chr7:44097459-44097571;chr7:44097592-44097727		chr7:44097572-44097591			1.30	10.53	1.61	0.00	0.00	NA	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	2.99	2.17	0.00	2.48	1.61	0.00	0.00	0.00	2.27	1.92	3.23	0.00	0.00	1.28	0.00	1.79	1.79	0.759981	0.925284
K	cassette	MYL6	chr12	+	chr12:56552496-56553758	chr12:56552496-56553370;chr12:56553407-56553758		chr12:56553371-56553406			92.03	91.04	92.82	90.78	91.70	89.52	98.63	98.80	98.42	97.79	98.41	98.15	98.69	98.49	98.37	96.98	98.01	97.61	93.47	94.57	95.50	92.53	94.00	92.11	93.64	96.57	95.76	95.23	97.08	95.81	89.74	89.24	87.04	90.82	91.65	91.13	93.56	95.57	2.01	0.598773	0.849488
K	intron_retention	APBA3	chr19	-	chr19:3751552-3752505				chr19:3751551-3751552;chr19:3752505-3752506		7.69	8.82	0.00	9.09	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	4.17	4.35	8.33	6.12	NA	0.00	8.33	2.70	0.00	7.69	0.00	2.56	4.92	0.00	0.00	6.25	0.00	0.00	3.37	3.37	0.852315	1.000000
K	intron_retention	UBL5	chr19	+	chr19:9938741-9939002				chr19:9938740-9938741;chr19:9939002-9939003		5.00	0.00	3.23	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	2.20	2.94	2.56	6.45	4.44	0.00	0.00	0.00	0.00	1.85	11.32	9.52	4.29	0.00	4.88	2.00	0.00	1.51	1.51	0.790142	1.000000
K	cassette	NDUFV1	chr11	+	chr11:67374548-67376022	chr11:67374548-67375870;chr11:67375950-67376022		chr11:67375871-67375949			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	80.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	jcn_only_AD	CNBP	chr3	-	chr3:128890382-128890497;chr3:128890382-128890494	chr3:128890382-128890476		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		49.54	40.00	46.78	54.17	46.38	NA	50.86	51.83	52.33	46.29	50.49	47.06	50.52	50.00	51.59	42.86	43.96	35.29	NA	40.48	46.03	44.14	46.05	44.55	NA	53.54	46.12	43.48	48.44	44.29	39.36	37.27	50.00	44.33	38.35	41.14	50.26	49.77	-0.49	0.917219	0.958435
N	alternative_acceptor	C5orf51	chr5	+	chr5:10258416-10258515	chr5:10258416-10258497		chr5:10258498-10258515	chr5:10258515-10258516		92.68	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	98.95	98.33	NA	100.00	100.00	100.00	100.00	100.00	86.84	100.00	100.00	96.88	100.00	100.00	100.00	96.78	-3.22	0.098841	0.598353
K	intron_retention	OSCAR	chr19	-	chr19:54598623-54599136				chr19:54598622-54598623;chr19:54599136-54599137		80.00	85.19	85.88	76.19	75.68	72.73	67.39	70.86	76.26	72.00	77.78	78.43	72.73	69.30	75.38	80.95	74.29	64.52	78.12	76.47	68.18	90.00	86.49	75.00	75.86	67.42	83.67	88.89	74.14	82.69	71.74	71.43	69.23	86.67	86.96	80.68	74.30	71.30	-3.00	0.639040	1.000000
K	jcn_only_AD	ADH5	chr4	-	chr4:100002604-100003152	chr4:100002604-100003125		chr4:100003126-100003152	chr4:100003152-100003153		100.00	100.00	100.00	NA	100.00	NA	95.08	100.00	100.00	100.00	99.17	100.00	94.87	100.00	94.83	98.00	100.00	100.00	NA	100.00	100.00	94.12	96.49	100.00	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.54	100.00	2.46	0.181829	0.657607
K	intron_retention	TP53BP1	chr15	-	chr15:43700287-43701094				chr15:43700286-43700287;chr15:43701094-43701095		5.88	0.00	9.09	0.00	0.00	NA	20.00	NA	0.00	NA	NA	NA	40.00	NA	0.00	NA	NA	NA	0.00	5.88	3.70	NA	15.79	NA	8.33	0.00	2.70	NA	5.00	NA	0.00	0.00	0.00	7.69	14.29	NA	4.17	2.94	-1.23	0.590246	1.000000
K	intron_retention	ZNF385A	chr12	-	chr12:54764881-54765256				chr12:54764880-54764881;chr12:54765256-54765257		3.30	0.00	11.25	NA	3.57	NA	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	NA	6.12	3.33	0.00	8.05	0.00	20.00	3.53	11.76	6.45	2.78	3.12	6.52	7.04	NA	10.34	5.45	5.80	0.00	3.42	3.42	0.623778	1.000000
K	jcn_only_AA	ARRDC1,KIAA1958	chr9	+	chr9:140508222-140508483;chr9:140508222-140508591	chr9:140508222-140508432		chr9:140508433-140508483;chr9:140508484-140508591	chr9:140508483-140508484;chr9:140508591-140508592		2.04	0.00	0.00	NA	0.00	NA	0.00	2.17	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	NA	3.85	0.00	0.00	0.00	0.00	0.00	0.00	2.13	2.50	11.76	2.22	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	2.15	2.15	0.095139	0.663989
N	alternative_donor	MVD	chr16	-	chr16:88723991-88724322;chr16:88723991-88724142	chr16:88723991-88724121		chr16:88724122-88724142;chr16:88724143-88724322	chr16:88724142-88724143;chr16:88724322-88724323		4.55	4.88	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.70	0.00	0.00	NA	0.00	6.67	0.00	0.00	5.41	0.00	5.56	0.00	5.13	0.00	3.57	0.00	5.56	5.56	0.00	0.00	2.63	4.00	0.00	2.27	2.27	0.546238	0.780071
K	coord_cassette	NTAN1	chr16	-	chr16:15141408-15149747	chr16:15141408-15141711;chr16:15141778-15141853;chr16:15141957-15149747		chr16:15141712-15141777;chr16:15141854-15141956			82.93	100.00	78.57	80.00	85.37	NA	97.53	96.08	100.00	93.10	94.68	94.55	93.15	100.00	100.00	100.00	93.02	97.22	NA	80.65	100.00	88.46	87.93	96.55	NA	91.67	84.00	93.10	92.54	100.00	72.22	78.57	70.00	90.00	93.48	90.20	95.34	87.30	-8.04	0.732892	0.870412
N	alternative_acceptor	FCGRT	chr19	+	chr19:50016731-50017138	chr19:50016731-50017120		chr19:50017121-50017138	chr19:50017138-50017139		5.67	4.78	11.30	0.88	2.02	0.60	0.37	0.39	0.24	0.17	0.28	0.00	0.85	1.46	0.88	0.00	0.32	0.10	2.73	4.06	2.99	0.50	1.54	0.74	7.54	2.81	8.00	0.50	1.41	0.27	0.72	3.35	2.05	1.26	1.99	0.53	2.39	2.13	-0.25	0.707942	0.890280
N	alternative_acceptor	CD33	chr19	+	chr19:51738932-51742772;chr19:51738932-51739077	chr19:51738932-51742327		chr19:51739078-51742327;chr19:51742328-51742772	chr19:51742327-51742328;chr19:51742772-51742773		2.22	0.00	1.09	0.00	1.61	0.00	0.70	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.49	3.33	3.39	0.00	0.00	0.00	0.00	0.00	0.99	5.26	0.00	2.08	0.00	1.72	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.814809	0.934961
N	jcn_only_AA	TNIP1	chr5	-	chr5:150410235-150411847;chr5:150410107-150411847;chr5:150410481-150411847;chr5:150410875-150411847;chr5:150410333-150411847	chr5:150410309-150411847		chr5:150410107-150410234;chr5:150410235-150410308;chr5:150410309-150410332;chr5:150410333-150410480;chr5:150410481-150410874	chr5:150410106-150410107;chr5:150410234-150410235;chr5:150410308-150410309;chr5:150410332-150410333;chr5:150410480-150410481		80.70	80.95	79.70	83.29	88.48	81.36	85.94	83.77	84.00	84.77	89.06	79.20	88.14	87.79	83.98	86.02	87.18	83.67	80.00	80.81	79.51	82.45	85.79	83.75	83.96	81.57	81.69	86.89	88.04	83.55	77.19	76.18	81.25	83.36	82.54	80.46	82.60	81.19	-1.41	0.489659	0.748258
N	jcn_only_AA		chr19	+	chr19:18286508-18287857;chr19:18286508-18287917;chr19:18286508-18287958	chr19:18286508-18287971					9.09	0.00	NA	NA	23.53	NA	9.52	0.00	NA	NA	4.35	NA	0.00	0.00	NA	NA	0.00	NA	22.73	12.50	5.88	NA	19.23	9.09	NA	0.00	25.00	NA	6.25	NA	16.22	38.10	11.11	8.33	0.00	NA	9.52	4.54	-4.97	0.658430	0.847477
K	intron_retention	VAC14	chr16	-	chr16:70732715-70765397				chr16:70732714-70732715;chr16:70765397-70765398		9.38	11.11	6.45	6.90	12.50	23.53	0.00	0.00	3.23	4.23	2.33	3.23	0.00	4.00	0.00	5.45	1.28	3.33	4.55	0.00	2.70	0.00	4.05	7.32	0.00	7.32	0.00	6.98	2.99	9.38	3.45	0.00	10.00	5.13	2.22	7.50	2.27	3.73	1.45	0.993171	1.000000
K	intron_retention		chr16	+	chr16:28847812-28848048				chr16:28847811-28847812;chr16:28848048-28848049		100.00	100.00	100.00	97.22	100.00	93.33	100.00	88.24	96.97	100.00	100.00	NA	100.00	90.91	97.73	100.00	94.74	91.67	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	94.29	100.00	99.00	100.00	100.00	100.00	96.92	100.00	98.72	-1.28	0.239540	1.000000
N	cassette	TMEM51	chr1	+	chr1:15480451-15545821	chr1:15480451-15541390;chr1:15541928-15545821		chr1:15541391-15541927			96.51	100.00	97.26	100.00	100.00	NA	100.00	100.00	100.00	98.91	100.00	100.00	98.90	100.00	100.00	100.00	98.91	98.02	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.77	94.23	100.00	100.00	97.89	100.00	100.00	100.00	0.00	0.271457	0.709176
N	jcn_only_AA	CYTH2	chr19	+	chr19:48978207-48980973;chr19:48978207-48981325	chr19:48978207-48981322		chr19:48980974-48981322;chr19:48981323-48981325	chr19:48981322-48981323;chr19:48981325-48981326		51.35	50.00	50.65	50.00	55.32	63.64	40.48	45.88	52.00	44.90	56.52	43.75	48.08	49.32	53.85	47.22	43.40	47.95	50.00	48.39	59.65	38.24	50.88	40.00	59.09	49.38	47.44	53.33	52.08	51.61	60.53	55.71	54.76	47.50	43.90	50.77	50.00	49.35	-0.65	0.904636	0.968067
K	jcn_only_AA	C3	chr19	-	chr19:6677970-6686756	chr19:6686299-6686756		chr19:6677970-6686298	chr19:6677969-6677970		100.00	81.82	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	43.75	100.00	84.00	95.76	100.00	100.00	64.71	100.00	100.00	98.21	100.00	100.00	96.72	100.00	66.67	98.05	100.00	100.00	74.25	100.00	25.75	0.049203	0.663989
N	alternative_donor	DYNLL1	chr12	+	chr12:120935698-120935875;chr12:120934020-120935875	chr12:120934357-120935875		chr12:120934020-120934356;chr12:120934357-120935697	chr12:120934019-120934020;chr12:120934356-120934357		94.50	97.22	92.98	97.46	97.35	98.44	99.13	98.82	99.25	97.94	98.54	96.97	98.96	98.92	99.17	98.21	99.07	100.00	98.29	91.45	97.87	91.67	94.52	89.29	98.18	94.83	94.97	97.14	97.31	95.61	88.28	89.33	94.69	93.64	93.72	90.54	98.24	94.66	-3.57	0.118379	0.530980
K	cassette	LILRA2	chr19	+	chr19:55087577-55098667	chr19:55087577-55098476;chr19:55098528-55098667		chr19:55098477-55098527			2.96	0.48	0.00	0.00	1.32	0.00	3.03	NA	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	2.17	2.67	0.00	5.26	3.64	4.17	3.75	1.61	0.00	0.00	0.00	0.00	6.25	11.76	1.50	0.00	2.27	5.56	2.17	2.81	0.65	0.351986	0.709176
K	intron_retention	AGRN	chr1	+	chr1:980904-981112				chr1:980903-980904;chr1:981112-981113		1.56	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	2.70	0.00	0.00	NA	1.72	NA	NA	0.00	7.14	0.00	3.57	0.00	0.00	NA	NA	2.70	0.00	NA	6.25	5.26	5.71	0.00	1.64	1.64	0.368830	1.000000
N	jcn_only_AA	CEP250	chr20	+	chr20:34097884-34101855;chr20:34097884-34099191	chr20:34097884-34104810		chr20:34099192-34101855;chr20:34101856-34104810	chr20:34101855-34101856;chr20:34104810-34104811		0.00	1.79	0.00	6.25	2.78	0.00	5.56	NA	8.33	9.09	0.00	NA	8.70	NA	0.00	NA	5.88	NA	8.16	0.00	6.67	12.00	7.14	0.00	4.84	0.00	6.25	6.25	4.00	0.00	0.00	6.45	10.42	3.23	7.14	0.00	6.86	0.00	-6.86	0.003583	0.442962
N	cassette	PPP1R9B	chr17	-	chr17:48216682-48218633;chr17:48216947-48218633	chr17:48216682-48217457,chr17:48216947-48217457;chr17:48217725-48218633		chr17:48217458-48217724			90.00	89.36	92.86	NA	100.00	NA	100.00	96.30	98.36	100.00	100.00	NA	100.00	100.00	97.37	100.00	100.00	100.00	100.00	84.62	100.00	100.00	91.89	NA	100.00	85.71	94.59	100.00	96.15	NA	NA	86.49	82.61	100.00	93.62	80.00	100.00	90.00	-10.00	0.375320	0.709410
K	intron_retention		chr16	+	chr16:28846721-28846869				chr16:28846720-28846721;chr16:28846869-28846870		5.00	0.00	8.57	4.76	1.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	6.25	7.41	3.12	0.00	5.81	3.33	0.00	2.08	0.00	2.27	1.85	0.00	13.04	8.33	20.00	10.64	9.52	7.58	0.82	3.54	2.72	0.998815	1.000000
K	jcn_only_AD	ABCD4	chr14	-	chr14:74754963-74755418	chr14:74754963-74755362		chr14:74755363-74755418	chr14:74755418-74755419		0.00	15.56	8.33	NA	10.71	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	8.70	0.00	3.70	NA	10.53	NA	0.00	6.45	13.79	NA	8.00	0.00	4.76	10.00	3.70	4.35	5.56	0.00	1.85	0.00	-1.85	0.360471	0.657607
N	cassette	MRPL14	chr6	-	chr6:44081947-44095080	chr6:44081947-44084277;chr6:44084367-44095080		chr6:44084278-44084366			100.00	100.00	94.74	98.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.94	96.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	100.00	100.00	0.00	0.582437	0.839808
N	jcn_only_AD	IFI35	chr17	+	chr17:41165352-41165492;chr17:41165346-41165492;chr17:41165391-41165492	chr17:41165397-41165492		chr17:41165346-41165351;chr17:41165352-41165390;chr17:41165391-41165396	chr17:41165345-41165346;chr17:41165351-41165352;chr17:41165390-41165391		46.55	39.66	54.90	51.61	44.19	50.91	57.63	62.27	59.58	68.29	51.61	67.59	63.51	59.35	57.94	57.14	66.04	66.36	44.44	51.18	57.33	44.44	46.67	51.48	43.48	55.44	48.05	49.65	51.72	58.67	49.41	50.34	48.98	58.06	32.00	47.84	46.71	53.31	6.60	0.351966	0.657607
K	intron_retention	SLTM	chr15	-	chr15:59171976-59172178				chr15:59171975-59171976;chr15:59172178-59172179		100.00	100.00	100.00	100.00	94.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	93.55	100.00	100.00	100.00	100.00	100.00	93.48	100.00	97.96	100.00	100.00	100.00	90.32	97.78	98.04	100.00	100.00	100.00	0.00	0.748032	1.000000
K	intron_retention	CREB3	chr9	+	chr9:35733141-35733211				chr9:35733140-35733141;chr9:35733211-35733212		4.88	0.00	7.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	3.03	3.92	3.70	0.00	3.64	0.00	0.00	1.64	0.00	0.00	0.00	11.32	8.24	12.50	2.08	4.62	1.04	0.00	1.51	1.51	0.909543	1.000000
N	alternative_acceptor		chr17	+	chr17:4797929-4798375	chr17:4797929-4798369		chr17:4798370-4798375	chr17:4798375-4798376		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	92.86	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention	PPP6R1	chr19	-	chr19:55751280-55751366				chr19:55751279-55751280;chr19:55751366-55751367		2.42	3.75	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.41	0.00	0.00	1.05	0.00	7.35	2.86	3.74	0.00	0.00	0.00	11.36	6.80	3.33	5.17	2.56	0.00	1.67	2.64	0.97	0.876236	1.000000
N	cassette	STAT6	chr12	-	chr12:57493224-57493778;chr12:57492862-57493778	chr12:57493224-57493549,chr12:57492862-57493549;chr12:57493687-57493778		chr12:57493550-57493686			100.00	100.00	97.12	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	97.92	100.00	100.00	99.01	100.00	100.00	98.33	98.98	100.00	98.53	100.00	94.87	96.39	100.00	98.46	97.87	99.20	100.00	99.16	-0.84	0.956071	0.987629
K	alternative_first_exon	CAPZB	chr1	-	chr1:19746245-19746518,chr1:19746245-19753926,chr1:19746245-19762388,chr1:19746245-19774968,chr1:19746245-19775001,chr1:19746245-19775658,chr1:19746245-19781251,chr1:19746245-19801224,chr1:19746245-19810377,chr1:19746245-19811403;chr1:19746245-19810683;chr1:19746245-19775327	chr1:19746245-19811929	chr1:19810684-19811158;chr1:19775328-19775824	chr1:19811930-19812007			98.03	92.27	96.49	95.45	89.90	85.92	95.47	98.61	98.45	94.88	94.77	85.75	93.65	98.93	96.92	93.37	90.57	80.68	98.88	99.25	100.00	97.93	97.57	90.48	97.65	99.32	98.76	98.21	95.75	89.90	100.00	98.35	98.86	97.69	98.80	90.93	96.56	99.09	2.53	0.051281	0.175540
N	alternative_acceptor	IRF7	chr11	-	chr11:613116-613205;chr11:613133-613205	chr11:613118-613205		chr11:613116-613117;chr11:613118-613132	chr11:613115-613116;chr11:613117-613118		90.89	86.67	92.11	89.74	88.89	90.03	90.00	96.82	98.45	95.65	NA	97.65	94.44	98.29	97.34	95.38	90.91	97.67	84.62	90.19	86.86	84.48	90.00	90.29	90.91	94.76	89.89	89.10	92.86	91.92	85.49	84.67	82.26	88.50	82.35	89.44	88.34	92.83	4.49	0.116545	0.606219
N	alternative_acceptor	AGBL3,GSTK1	chr7	+	chr7:142961770-142962084	chr7:142961770-142962027		chr7:142962028-142962084	chr7:142962084-142962085		4.90	3.86	6.06	1.39	1.98	1.85	0.40	0.00	0.71	0.00	0.29	0.00	0.00	1.96	0.65	0.00	0.00	0.00	5.38	3.77	3.43	0.00	3.05	0.85	4.82	4.23	4.35	0.00	1.42	1.59	1.89	4.80	3.94	2.11	3.05	2.86	3.90	2.87	-1.03	0.823386	0.940110
N	alternative_acceptor	FAM192A	chr16	-	chr16:57201139-57206162	chr16:57201143-57206162		chr16:57201139-57201142	chr16:57201138-57201139		3.77	0.00	2.53	7.14	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	4.08	7.14	0.00	2.44	1.33	0.00	0.00	1.82	4.76	5.26	5.88	2.56	1.89	4.44	0.00	3.04	3.04	0.283622	0.709013
K	intron_retention	DNASE1L1	chrX	-	chrX:153631183-153631282				chrX:153631182-153631183;chrX:153631282-153631283		6.25	8.33	15.00	0.00	11.11	NA	6.17	3.45	3.85	4.76	8.06	4.55	3.70	4.26	6.90	6.90	2.94	0.00	12.50	12.50	6.90	15.79	10.91	5.26	0.00	2.27	12.50	1.96	9.86	2.78	12.00	5.13	0.00	7.14	7.02	1.39	4.94	5.25	0.32	0.711309	1.000000
K	intron_retention		chr17	-	chr17:27042920-27043010				chr17:27042919-27042920;chr17:27043010-27043011		2.82	0.00	3.73	0.00	1.82	NA	0.00	0.00	1.20	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	9.09	0.00	0.00	2.84	0.00	0.00	0.00	2.70	2.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.489422	1.000000
K	cassette	RP11-1012A1.4,VTI1B	chr14	-	chr14:68129253-68141091	chr14:68129253-68129745;chr14:68129908-68141091		chr14:68129746-68129907			4.08	3.45	6.90	4.35	5.45	0.00	1.75	5.26	5.62	2.31	2.40	1.64	1.26	2.67	6.02	3.06	3.23	3.61	0.00	2.56	6.00	2.70	5.62	0.00	3.03	3.77	6.25	2.08	3.42	2.08	2.33	10.29	2.08	6.38	4.76	4.48	1.92	3.22	1.30	0.052127	0.578861
N	cassette	PTGR1	chr9	-	chr9:114325512-114337013	chr9:114325512-114332370;chr9:114332490-114337013		chr9:114332371-114332489			95.89	100.00	96.10	96.84	98.55	100.00	100.00	94.81	100.00	100.00	100.00	96.15	100.00	98.99	100.00	100.00	97.14	100.00	93.48	98.28	97.96	98.25	100.00	100.00	100.00	98.26	98.13	96.59	96.77	97.37	100.00	98.21	100.00	100.00	100.00	98.77	100.00	98.27	-1.73	0.393513	0.710242
K	alternative_acceptor	UFSP2	chr4	-	chr4:186327011-186329089	chr4:186327114-186329089		chr4:186327011-186327113	chr4:186327010-186327011		0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.14	0.00	NA	0.00	NA	5.56	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	8.00	NA	0.00	0.00	0.00	0.776830	0.917646
N	alternative_donor	GMFG	chr19	-	chr19:39819714-39820187;chr19:39819714-39820245	chr19:39819714-39820183		chr19:39820184-39820187;chr19:39820188-39820245	chr19:39820187-39820188;chr19:39820245-39820246		97.06	97.43	96.59	97.39	98.23	96.83	96.45	98.86	100.00	98.85	96.88	97.94	97.95	98.67	100.00	95.92	96.36	95.24	96.48	96.77	95.68	98.11	96.55	98.33	97.35	96.49	96.92	98.68	98.11	97.58	95.12	96.00	97.36	96.88	97.33	94.57	97.35	96.91	-0.44	0.989734	0.997584
N	alternative_acceptor	UFD1L	chr22	-	chr22:19438268-19442271	chr22:19438305-19442271		chr22:19438268-19438304	chr22:19438267-19438268		11.59	15.87	14.71	11.32	12.95	8.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.53	10.29	5.48	13.95	9.52	5.41	12.26	5.80	10.29	4.65	7.58	6.90	9.20	15.05	8.08	12.50	7.25	8.06	8.30	7.50	-0.80	0.705075	0.889787
N	jcn_only_AD	CDK11A,RP1-283E3.8	chr1	-	chr1:1636095-1636342	chr1:1636095-1636214		chr1:1636215-1636342	chr1:1636342-1636343		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	10.00	0.00	3.85	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.634366	0.818639
N	jcn_only_AA		chr2	+	chr2:99988194-99992812	chr2:99988194-99992809		chr2:99992810-99992812	chr2:99992812-99992813		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	97.37	100.00	95.38	100.00	100.00	100.00	97.44	93.75	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	ZMAT5	chr22	-	chr22:30127344-30134318	chr22:30127656-30134318		chr22:30127344-30127655	chr22:30127343-30127344		0.00	0.00	0.00	NA	0.00	0.00	0.00	8.70	NA	0.00	4.26	NA	0.00	0.00	6.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	4.35	0.00	3.12	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.276919	0.663989
K	intron_retention		chr13	+	chr13:44463119-44464249				chr13:44463118-44463119;chr13:44464249-44464250		7.41	0.00	15.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.98	0.00	1.27	1.11	4.35	1.45	1.72	0.00	NA	8.16	NA	8.70	5.17	0.00	NA	7.50	12.50	9.09	4.90	NA	9.09	5.88	0.00	9.88	9.09	0.00	0.00	7.46	7.46	0.638923	1.000000
K	intron_retention	RBMX	chrX	-	chrX:135956612-135957244				chrX:135956611-135956612;chrX:135957244-135957245		18.18	0.00	17.65	NA	0.00	NA	3.64	5.56	2.22	1.28	0.00	0.00	2.74	0.00	9.30	2.56	2.82	1.75	NA	0.00	0.00	8.33	6.82	15.38	NA	0.00	15.38	0.00	2.08	2.70	NA	4.76	0.00	14.29	5.56	15.38	1.37	0.00	-1.37	0.887904	1.000000
K	intron_retention	FES	chr15	+	chr15:91434422-91434783				chr15:91434421-91434422;chr15:91434783-91434784		17.95	8.70	11.11	9.09	10.00	NA	0.00	0.00	0.00	NA	0.00	NA	4.49	NA	NA	0.00	4.76	NA	2.78	0.00	6.25	NA	14.81	NA	10.00	9.09	14.29	9.09	17.39	NA	5.88	18.18	13.79	NA	15.38	10.81	6.59	5.88	-0.71	0.987107	1.000000
N	coord_cassette	TMEM14C	chr6	+	chr6:10723475-10728872	chr6:10723475-10725193;chr6:10725271-10726139;chr6:10726242-10728872		chr6:10725194-10725270;chr6:10726140-10726241			96.00	100.00	91.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.97	97.14	100.00	100.00	94.67	97.73	100.00	100.00	100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.67	96.67	95.00	94.74	100.00	96.23	100.00	100.00	100.00	100.00	0.00	0.429674	0.674674
N	alternative_donor	IWS1	chr2	-	chr2:128246812-128247407	chr2:128246812-128247393		chr2:128247394-128247407	chr2:128247407-128247408		5.56	0.00	3.77	1.96	3.23	3.03	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	5.13	0.00	0.00	2.17	1.54	2.04	0.00	3.45	1.75	2.00	1.39	1.15	0.00	6.45	0.00	2.13	3.85	3.92	0.00	0.00	0.00	0.631566	0.834022
K	intron_retention	EML3	chr11	-	chr11:62370362-62370620				chr11:62370361-62370362;chr11:62370620-62370621		30.77	15.97	16.18	31.25	24.05	26.53	0.00	6.67	5.56	NA	15.38	NA	3.57	9.09	25.00	0.00	18.18	NA	23.26	21.43	24.36	30.43	28.57	21.74	26.00	23.08	24.14	30.00	28.89	29.17	28.21	28.30	19.57	22.92	19.05	21.15	17.77	22.25	4.48	0.927967	1.000000
N	jcn_only_AA	ITGB7	chr12	-	chr12:53585416-53585642;chr12:53585516-53585642	chr12:53585421-53585642		chr12:53585416-53585420;chr12:53585421-53585515	chr12:53585415-53585416;chr12:53585420-53585421		100.00	100.00	100.00	100.00	100.00	98.59	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.25	98.11	100.00	98.51	100.00	100.00	98.46	82.35	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.23	-0.77	0.094223	0.663989
N	intron_retention		chr9	-	chr9:130578086-130578241				chr9:130578085-130578086;chr9:130578241-130578242		100.00	100.00	100.00	100.00	98.91	100.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.81	100.00	98.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.67	98.51	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.608000	1.000000
K	alternative_last_exon	SSSCA1	chr11	+	chr11:65338442-65338861;chr11:65338442-65339913	chr11:65338442-65340833	chr11:65338862-65339359;chr11:65339914-65340363	chr11:65340834-65341663			10.71	4.84	3.85	11.36	11.63	11.36	4.08	8.70	6.06	8.11	7.69	11.11	6.67	8.70	7.89	4.26	5.88	8.33	11.11	21.43	6.78	17.39	30.56	17.65	10.91	13.64	5.41	13.04	21.43	15.15	15.79	10.34	8.06	10.53	7.41	11.11	7.37	12.18	4.81	0.045011	0.227559
N	jcn_only_AA		chr16	+	chr16:31141928-31142515	chr16:31141928-31142066		chr16:31142067-31142515	chr16:31142515-31142516		100.00	100.00	100.00	93.10	94.03	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	97.18	100.00	96.30	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	97.14	97.30	100.00	100.00	92.86	100.00	100.00	0.00	0.174814	0.663989
K	jcn_only_AD	DNAJB1	chr19	-	chr19:14627859-14628950	chr19:14627859-14628402		chr19:14628403-14628950	chr19:14628950-14628951		0.00	0.00	0.00	0.00	0.00	NA	5.81	0.00	0.00	2.38	0.00	0.00	4.40	2.53	2.63	0.00	3.28	0.00	NA	0.00	5.88	0.00	0.00	0.00	0.00	4.65	1.82	0.00	7.50	0.00	7.14	0.00	0.00	2.13	0.00	0.00	0.00	1.26	1.26	0.849426	0.928405
N	alternative_acceptor	SH3GL1	chr19	-	chr19:4366992-4400320	chr19:4390211-4400320		chr19:4366992-4390210	chr19:4366991-4366992		0.00	4.55	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.69	0.00	NA	0.00	0.00	0.00	2.00	NA	0.00	0.00	9.09	0.00	4.00	4.76	2.27	0.00	-2.27	0.215077	0.671511
K	intron_retention		chr1	-	chr1:117057445-117061852				chr1:117057444-117057445;chr1:117061852-117061853		8.33	15.49	11.11	11.11	8.78	6.33	0.00	0.00	0.00	0.90	0.75	0.00	0.00	1.79	5.00	0.00	2.04	1.10	9.78	8.51	6.52	6.58	10.88	8.33	10.53	7.69	7.14	6.58	10.67	3.33	7.46	5.56	10.61	9.09	13.45	4.08	10.15	7.58	-2.58	0.414140	1.000000
N	alternative_donor	FAM195B,USP36	chr17	-	chr17:79780784-79781084	chr17:79780784-79781077		chr17:79781078-79781084	chr17:79781084-79781085		68.00	50.00	73.91	68.00	73.13	49.06	60.38	77.78	70.83	71.88	80.49	76.92	60.71	100.00	95.65	67.21	86.49	73.08	40.24	64.00	49.06	84.38	72.88	70.27	44.26	NA	66.67	69.23	75.51	65.15	53.85	71.43	61.90	69.23	70.00	63.38	55.19	68.00	12.81	0.064222	0.436357
K	intron_retention	GPS1	chr17	+	chr17:80014851-80014928				chr17:80014850-80014851;chr17:80014928-80014929		2.00	5.07	1.92	4.35	5.08	4.40	1.27	0.00	0.00	2.17	1.08	0.00	0.00	0.00	1.92	2.27	0.00	0.00	8.41	6.90	2.16	10.34	4.71	5.00	8.25	0.00	3.23	3.45	3.95	7.89	7.32	1.75	5.65	0.00	4.44	4.35	5.36	1.00	-4.36	0.958294	1.000000
K	alternative_last_exon	PHLDB1,SDHAF2	chr11	+	chr11:61205321-61213412	chr11:61205321-61205475	chr11:61213413-61215001	chr11:61205476-61205715			100.00	95.45	100.00	93.75	93.94	91.67	100.00	100.00	100.00	97.06	97.87	96.15	100.00	100.00	96.55	100.00	100.00	100.00	92.86	100.00	95.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	95.45	100.00	4.55	0.077981	0.281549
K	intron_retention		chr8	-	chr8:87489554-87491151				chr8:87489553-87489554;chr8:87491151-87491152		5.00	0.00	11.76	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	6.67	0.00	3.12	0.00	0.00	0.00	2.78	6.67	0.00	NA	0.00	NA	19.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	3.17	0.00	-3.17	0.856645	1.000000
K	intron_retention	UBXN6	chr19	-	chr19:4446195-4446279				chr19:4446194-4446195;chr19:4446279-4446280		7.25	5.51	11.43	3.17	4.17	3.26	0.00	1.72	1.59	0.00	0.00	0.00	0.90	2.56	3.28	1.33	1.12	0.00	4.83	9.09	6.45	8.57	4.81	3.70	5.61	7.14	6.41	3.77	1.12	0.00	18.28	10.48	8.72	9.30	4.76	8.06	5.17	7.20	2.03	0.710263	1.000000
N	jcn_only_AA	ORC4	chr2	-	chr2:148695775-148695866;chr2:148695772-148695866	chr2:148695783-148695866		chr2:148695772-148695774;chr2:148695775-148695782	chr2:148695771-148695772;chr2:148695774-148695775		100.00	100.00	100.00	NA	93.33	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.33	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	93.55	100.00	92.31	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	cassette	SECTM1	chr17	-	chr17:80280247-80282457	chr17:80280247-80280753;chr17:80280888-80282457		chr17:80280754-80280887			100.00	100.00	100.00	100.00	98.75	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	98.04	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	95.35	100.00	95.24	98.38	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	PCBP2	chr12	+	chr12:53861628-53862560;chr12:53861628-53862563	chr12:53861628-53861966		chr12:53861967-53862560;chr12:53862561-53862563	chr12:53862560-53862561;chr12:53862563-53862564		15.00	3.65	15.87	8.57	6.62	2.50	2.14	2.15	2.40	1.55	1.73	1.13	2.59	3.37	5.59	2.37	2.96	1.37	4.35	11.94	5.95	14.55	9.19	14.07	5.77	18.03	21.51	9.00	9.62	9.38	15.79	13.51	4.88	12.80	14.08	12.04	4.00	13.47	9.47	0.047428	0.570243
N	alternative_acceptor	CHD3	chr17	+	chr17:7812657-7813403;chr17:7812657-7813756	chr17:7812657-7813745		chr17:7813404-7813745;chr17:7813746-7813756	chr17:7813745-7813746;chr17:7813756-7813757		44.90	57.14	41.13	52.63	52.83	NA	77.78	75.00	71.43	80.00	91.67	NA	73.33	NA	60.00	NA	80.00	NA	54.84	33.33	48.94	47.06	48.89	53.33	57.14	44.44	49.06	NA	47.83	NA	35.71	42.35	55.88	52.00	48.65	44.00	57.14	44.44	-12.70	0.106325	0.598353
K	mutually_exclusive	PCBP2,RP11-793H13.8	chr12	+	chr12:53856352-53859715,chr12:53859758-53861004	chr12:53856352-53858543,chr12:53858637-53861004	chr12:53859716-53859757	chr12:53858544-53858636			19.10	2.02	15.04	28.12	14.85	13.33	12.28	11.96	11.02	15.33	16.91	17.17	12.50	13.33	11.21	21.62	11.43	19.10	4.35	15.38	5.56	25.32	15.45	23.08	0.00	13.33	11.88	19.35	11.00	14.86	11.11	7.45	11.48	20.18	21.43	18.75	7.92	13.33	5.42	0.029738	0.111517
K	cassette	TCF25	chr16	+	chr16:89952375-89958600	chr16:89952375-89954059;chr16:89954126-89958600		chr16:89954060-89954125			100.00	100.00	98.75	100.00	100.00	NA	97.59	96.55	96.49	100.00	100.00	100.00	98.67	100.00	97.18	100.00	100.00	97.56	100.00	97.78	100.00	100.00	96.30	100.00	83.33	100.00	100.00	97.22	100.00	100.00	95.00	98.77	100.00	100.00	100.00	98.82	99.34	98.89	-0.45	0.585870	0.842370
N	jcn_only_AA	CD276	chr15	+	chr15:73996814-74000703;chr15:73996814-74000684	chr15:73996814-74000679		chr15:74000680-74000684;chr15:74000685-74000703	chr15:74000684-74000685;chr15:74000703-74000704		98.88	100.00	100.00	100.00	96.61	91.30	95.37	100.00	100.00	100.00	96.32	100.00	100.00	100.00	100.00	96.94	94.96	93.78	100.00	100.00	100.00	100.00	95.70	97.33	100.00	100.00	100.00	98.29	100.00	100.00	95.38	95.45	100.00	94.51	96.18	96.48	100.00	100.00	0.00	0.867371	0.948413
N	cassette	CTD-3214H19.4,STXBP2	chr19	+	chr19:7704694-7705785	chr19:7704694-7705616;chr19:7705696-7705785		chr19:7705617-7705695			100.00	100.00	98.48	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.67	95.05	100.00	100.00	98.75	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	PRELID1	chr5	+	chr5:176733178-176733385;chr5:176733178-176733363;chr5:176733178-176733372;chr5:176733178-176733455	chr5:176733178-176733422		chr5:176733364-176733372;chr5:176733373-176733385;chr5:176733386-176733422;chr5:176733423-176733455	chr5:176733372-176733373;chr5:176733385-176733386;chr5:176733422-176733423;chr5:176733455-176733456		96.06	94.34	95.37	92.82	93.94	93.68	92.97	94.29	95.09	100.00	100.00	100.00	94.70	100.00	95.07	94.59	94.42	92.97	89.91	91.72	88.42	98.91	90.00	89.19	95.77	97.44	94.95	91.72	92.41	90.00	87.36	90.45	87.40	95.69	96.30	93.39	93.66	95.18	1.52	0.405443	0.720131
N	alternative_donor	BIVM-ERCC5,ERCC5	chr13	+	chr13:103520608-103524547	chr13:103520613-103524547		chr13:103520608-103520612	chr13:103520607-103520608		0.00	0.00	3.12	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	4.55	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.632235	0.834022
K	cassette	SCP2	chr1	+	chr1:53493744-53513529	chr1:53493744-53504588;chr1:53504719-53513529		chr1:53504589-53504718			93.55	100.00	96.00	NA	97.73	NA	97.91	100.00	96.97	96.92	97.86	99.29	98.08	100.00	98.39	96.26	98.75	98.15	100.00	93.88	94.29	92.59	95.58	98.61	NA	96.30	95.06	95.56	98.81	100.00	93.33	94.87	100.00	96.15	98.23	97.45	100.00	95.09	-4.91	0.067683	0.622875
K	jcn_only_AA	BCL2L12,ZNF419	chr19	+	chr19:50170057-50170278	chr19:50170057-50170275		chr19:50170276-50170278	chr19:50170278-50170279		92.86	100.00	84.38	NA	85.00	NA	88.89	94.74	100.00	92.31	100.00	NA	90.62	86.67	100.00	73.33	87.10	NA	NA	100.00	100.00	NA	86.67	NA	100.00	100.00	100.00	NA	91.30	NA	85.71	92.00	92.86	81.82	100.00	90.00	92.86	93.80	0.94	0.748166	0.887128
N	alternative_acceptor	DVL3	chr3	+	chr3:183885854-183887793	chr3:183885854-183887723		chr3:183887724-183887793	chr3:183887793-183887794		0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	2.78	6.67	0.00	3.70	0.00	2.44	3.57	0.00	4.76	3.57	0.00	1.54	0.00	2.78	0.00	1.67	0.00	0.00	0.00	0.178656	0.660713
N	jcn_only_AA	C17orf62	chr17	-	chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401382-80402322;chr17:80401503-80402322	chr17:80402001-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		87.08	97.50	93.30	100.00	87.14	61.54	96.04	93.17	94.81	91.30	94.03	100.00	95.54	93.21	94.15	97.22	91.55	93.94	77.08	91.13	84.00	100.00	91.03	91.89	100.00	96.43	90.64	88.64	89.83	92.41	88.10	86.46	77.55	96.97	98.08	96.52	95.79	92.15	-3.64	0.847295	0.938257
K	intron_retention	PCNXL3	chr11	+	chr11:65404161-65404236				chr11:65404160-65404161;chr11:65404236-65404237		9.09	14.04	6.56	17.39	6.12	23.33	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	2.33	3.03	2.50	0.00	8.77	11.63	12.50	18.18	7.89	11.76	11.11	6.06	8.16	9.52	5.56	15.38	18.87	11.11	15.28	21.74	20.00	19.44	9.94	7.57	-2.37	0.904414	1.000000
K	jcn_only_AA	USF1	chr1	-	chr1:161010114-161010365	chr1:161010121-161010365		chr1:161010114-161010120	chr1:161010113-161010114		100.00	100.00	96.70	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	100.00	100.00	100.00	93.65	100.00	100.00	NA	100.00	95.06	96.83	100.00	100.00	100.00	100.00	96.00	95.95	93.02	100.00	100.00	96.55	94.27	100.00	94.74	100.00	100.00	100.00	98.28	-1.72	0.080294	0.663989
K	intron_retention	PPWD1	chr5	+	chr5:64882009-64883079				chr5:64882008-64882009;chr5:64883079-64883080		5.41	0.00	6.12	10.53	2.13	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	4.76	4.88	0.00	1.69	0.00	0.00	0.00	6.00	0.00	0.00	0.00	8.33	2.22	5.26	4.35	2.86	7.14	0.00	2.38	2.38	0.516857	1.000000
N	cassette	PREX1	chr20	-	chr20:47361685-47444178	chr20:47361685-47364345;chr20:47364418-47444178		chr20:47364346-47364417			100.00	100.00	100.00	NA	NA	NA	98.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	NA	96.55	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	NA	95.83	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.746367	0.917222
N	cassette	MAPKAP1	chr9	-	chr9:128230389-128268588;chr9:128230389-128305337	chr9:128230389-128246721;chr9:128246863-128268588,chr9:128246863-128305337		chr9:128246722-128246862			91.67	100.00	100.00	94.74	96.00	NA	100.00	100.00	100.00	96.67	96.50	96.15	100.00	100.00	97.50	96.97	97.74	97.67	100.00	97.14	93.55	98.41	97.35	97.30	100.00	100.00	97.96	97.67	97.37	100.00	89.29	94.23	94.74	95.35	96.77	94.12	100.00	98.57	-1.43	0.233178	0.709176
N	cassette	GPR137	chr11	+	chr11:64055941-64056508;chr11:64055941-64056614	chr11:64055941-64056074;chr11:64056194-64056614,chr11:64056194-64056508		chr11:64056075-64056193			87.50	73.08	87.10	76.92	74.19	68.18	100.00	89.47	83.87	84.62	90.91	91.67	86.67	84.00	91.43	75.00	87.50	NA	81.63	78.95	87.23	NA	85.71	80.00	88.89	100.00	82.86	83.33	86.96	92.86	81.82	83.87	91.18	81.25	57.14	94.44	87.78	85.75	-2.03	0.992157	0.997468
N	alternative_acceptor	PCSK7	chr11	-	chr11:117077073-117077396;chr11:117076227-117077396	chr11:117072636-117077396		chr11:117072636-117076226;chr11:117076227-117077072	chr11:117072635-117072636;chr11:117076226-117076227		0.00	0.00	33.33	NA	0.00	0.00	0.00	15.38	NA	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	11.11	NA	0.00	14.29	15.38	NA	0.00	0.00	15.38	18.75	0.00	16.67	0.00	0.00	0.00	7.14	7.14	0.075835	0.585944
K	jcn_only_AA	TMEM120A	chr7	-	chr7:75616542-75616677	chr7:75616604-75616677		chr7:75616542-75616603	chr7:75616541-75616542		94.38	97.30	97.70	91.11	95.77	95.15	93.02	100.00	94.44	95.24	95.65	97.67	96.30	100.00	89.16	95.45	90.00	93.94	78.79	86.36	92.71	84.62	83.87	82.35	86.81	95.45	97.30	82.35	89.13	96.43	92.00	91.30	87.80	90.00	91.30	90.91	90.41	94.91	4.50	0.216939	0.663989
K	intron_retention	AP1G2	chr14	-	chr14:24030845-24031170				chr14:24030844-24030845;chr14:24031170-24031171		31.58	15.00	37.14	NA	25.00	NA	0.00	8.33	12.00	NA	16.67	NA	8.33	10.00	11.63	NA	10.00	NA	22.22	11.76	13.64	NA	28.57	NA	15.79	25.93	17.14	NA	22.22	NA	6.67	20.69	NA	20.00	40.91	38.10	15.00	10.88	-4.12	0.807817	1.000000
K	intron_retention	SRRM2	chr16	+	chr16:2818263-2818997				chr16:2818262-2818263;chr16:2818997-2818998		7.14	6.17	5.71	3.45	4.23	0.00	0.00	0.00	0.00	0.00	2.53	0.00	5.80	5.13	3.70	3.33	1.37	0.00	6.67	7.25	3.45	3.28	4.20	6.67	5.08	7.02	4.85	11.90	8.57	6.45	11.54	7.48	0.00	8.14	3.16	14.07	5.44	7.08	1.64	0.711524	1.000000
K	coord_cassette	EIF3I	chr1	+	chr1:32690077-32694099	chr1:32690077-32691771;chr1:32691922-32692003;chr1:32692132-32694099		chr1:32691772-32691921;chr1:32692004-32692131			96.10	100.00	97.96	95.45	96.05	100.00	99.28	98.21	98.08	100.00	99.31	100.00	100.00	98.18	97.20	99.47	98.31	100.00	93.94	93.33	95.65	96.74	97.17	100.00	100.00	94.74	100.00	98.85	98.89	99.04	92.31	92.05	94.74	96.49	97.14	97.28	99.64	95.42	-4.22	0.134019	0.643829
N	alternative_donor	HGS	chr17	+	chr17:79651922-79652634;chr17:79651134-79652634	chr17:79652100-79652634		chr17:79651134-79651921;chr17:79651922-79652099	chr17:79651133-79651134;chr17:79651921-79651922		3.33	8.33	5.45	NA	NA	NA	2.94	0.00	0.00	0.00	2.70	0.00	2.17	1.85	3.23	1.05	0.00	0.00	NA	2.33	NA	3.23	3.03	6.00	4.76	2.70	2.13	3.33	4.17	0.00	0.00	1.59	NA	5.56	7.32	7.14	3.85	2.09	-1.76	0.126794	0.540946
K	intron_retention	FTH1	chr11	-	chr11:61733050-61734783				chr11:61733049-61733050;chr11:61734783-61734784		67.68	41.30	79.11	54.13	48.39	52.05	5.77	15.04	15.45	8.20	9.47	9.82	10.34	16.41	29.75	18.18	11.29	21.15	26.83	63.71	39.34	60.00	53.92	66.32	50.00	59.80	80.35	67.97	50.57	68.75	66.99	69.02	51.79	66.87	65.83	68.38	34.06	61.75	27.69	0.308601	1.000000
N	alternative_donor		chr6	-	chr6:44084367-44093689;chr6:44084367-44094991;chr6:44084367-44094369	chr6:44084367-44095080		chr6:44093690-44094369;chr6:44094370-44094991;chr6:44094992-44095080	chr6:44094369-44094370;chr6:44094991-44094992;chr6:44095080-44095081		100.00	100.00	97.96	100.00	100.00	100.00	100.00	97.22	90.54	91.67	96.49	69.81	100.00	93.94	89.19	98.00	100.00	76.74	100.00	100.00	100.00	96.43	98.44	94.74	100.00	100.00	94.74	95.12	100.00	89.16	100.00	97.56	100.00	100.00	100.00	95.92	100.00	100.00	0.00	0.209553	0.581601
K	coord_cassette	NAGK	chr2	+	chr2:71295843-71299770	chr2:71295843-71297631;chr2:71297717-71297870;chr2:71297970-71299770		chr2:71297632-71297716;chr2:71297871-71297969			92.59	91.67	100.00	NA	85.71	NA	100.00	100.00	94.87	100.00	100.00	100.00	100.00	99.07	100.00	100.00	100.00	97.44	95.24	97.73	95.24	NA	91.18	93.75	75.00	95.45	83.33	93.75	95.83	97.14	89.66	86.67	88.00	81.82	100.00	95.65	93.45	96.59	3.14	0.360187	0.643829
K	alternative_donor	C7orf49	chr7	-	chr7:134852560-134853720;chr7:134852560-134853537;chr7:134852560-134853682	chr7:134852560-134853500		chr7:134853501-134853537;chr7:134853538-134853682;chr7:134853683-134853720	chr7:134853537-134853538;chr7:134853682-134853683;chr7:134853720-134853721		94.29	86.21	87.10	90.91	75.00	68.12	75.68	80.00	83.72	60.00	68.29	75.00	80.56	86.67	96.77	77.27	78.95	64.71	89.47	71.88	70.37	NA	76.00	91.30	64.52	60.00	70.00	85.00	66.67	83.78	76.60	91.11	80.77	86.21	92.31	90.00	80.66	78.30	-2.36	0.834855	0.953301
K	cassette	CHCHD7	chr8	+	chr8:57124397-57127156	chr8:57124397-57125320;chr8:57125469-57127156		chr8:57125321-57125468			27.78	7.14	24.24	43.75	42.11	37.04	29.41	35.48	41.18	40.00	38.10	51.52	22.22	38.10	40.62	39.13	33.33	41.67	16.67	19.23	27.03	39.13	35.00	45.83	NA	35.00	40.74	44.44	47.37	41.18	28.57	33.33	14.29	47.83	NA	56.00	16.67	31.79	15.11	0.027125	0.415018
N	alternative_acceptor	DUSP22	chr6	+	chr6:348842-350568;chr6:348842-350802;chr6:348842-350821	chr6:348842-350377		chr6:350378-350568;chr6:350569-350802;chr6:350803-350821	chr6:350568-350569;chr6:350802-350803;chr6:350821-350822		41.67	32.56	40.62	29.17	20.93	44.68	28.95	45.45	37.04	25.71	29.17	46.51	31.43	45.45	36.62	28.00	22.73	30.77	31.43	39.13	23.81	30.77	23.68	40.91	50.00	47.37	37.74	31.82	25.71	40.74	35.71	34.09	27.03	28.57	29.17	41.07	31.43	43.56	12.13	0.050768	0.570243
N	cassette	IL18BP	chr11	+	chr11:71710066-71710858;chr11:71710066-71710662;chr11:71710066-71710508;chr11:71710066-71710845;chr11:71710066-71710972	chr11:71710066-71710304;chr11:71710417-71710858,chr11:71710417-71710662,chr11:71710417-71710508,chr11:71710417-71710845,chr11:71710417-71710972		chr11:71710305-71710416			0.00	0.00	0.00	NA	0.00	NA	4.89	2.86	3.64	6.67	6.36	4.23	4.55	2.56	3.19	10.00	7.46	8.97	0.00	0.00	0.00	1.43	3.03	1.69	NA	3.77	2.44	9.38	3.41	3.92	0.00	3.51	NA	0.93	3.09	2.88	2.27	1.28	-0.99	0.614513	0.856028
K	intron_retention	SDS	chr12	-	chr12:113836652-113836916				chr12:113836651-113836652;chr12:113836916-113836917		4.22	0.00	6.82	NA	1.59	NA	0.00	1.00	0.59	1.34	0.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	6.33	4.17	0.00	3.80	0.00	0.00	5.88	7.30	0.00	1.30	NA	3.66	3.61	12.50	1.49	2.13	4.04	0.00	3.94	3.94	0.883401	1.000000
N	alternative_first_exon	DDT	chr22	-	chr22:24313813-24315293;chr22:24313813-24316495	chr22:24313813-24315956	chr22:24316496-24316773	chr22:24315957-24316132			100.00	100.00	100.00	92.31	98.48	98.90	94.87	96.15	97.14	96.97	96.34	95.24	94.74	93.55	95.45	93.55	97.26	97.56	96.97	90.91	91.01	95.45	94.44	95.00	100.00	NA	100.00	100.00	95.35	91.18	94.44	95.45	91.40	100.00	96.15	95.56	95.92	94.44	-1.48	0.533889	0.669242
N	cassette	FURIN	chr15	+	chr15:91420442-91421361	chr15:91420442-91420756;chr15:91420846-91421361		chr15:91420757-91420845			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	98.48	NA	96.23	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AD	COL8A2,PYCR2,RP4-559A3.7	chr1	-	chr1:226111472-226111743	chr1:226111472-226111610		chr1:226111611-226111743	chr1:226111743-226111744		0.00	0.00	1.64	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.51	2.94	0.00	0.00	0.00	3.57	0.00	6.25	5.13	0.00	NA	0.00	2.56	0.00	0.00	0.00	0.00	2.22	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.177266	0.657607
N	cassette	TREM2	chr6	-	chr6:41126805-41130780;chr6:41126519-41130780;chr6:41127621-41130780	chr6:41126519-41129000,chr6:41126805-41129000,chr6:41127621-41129000;chr6:41129352-41130780		chr6:41129001-41129351			91.53	91.62	95.83	100.00	93.62	98.20	95.06	100.00	100.00	98.71	94.55	96.39	95.55	100.00	100.00	94.59	94.09	95.48	90.18	93.55	96.45	95.31	95.05	92.98	88.98	100.00	92.11	94.12	90.89	95.54	100.00	95.24	91.31	100.00	93.33	95.31	91.47	100.00	8.53	0.021073	0.392137
N	jcn_only_AD	C6orf48	chr6	+	chr6:31790079-31803187;chr6:31785337-31803187;chr6:31802978-31803187;chr6:31802753-31803187	chr6:31802835-31803187		chr6:31785337-31790078;chr6:31790079-31802752;chr6:31802753-31802834;chr6:31802835-31802977	chr6:31785336-31785337;chr6:31790078-31790079;chr6:31802752-31802753;chr6:31802834-31802835		0.00	11.90	0.00	12.00	8.70	0.00	6.67	4.76	2.86	9.23	4.35	10.34	4.10	0.00	2.38	7.06	3.26	11.76	5.71	0.00	7.14	14.29	12.12	13.64	9.76	0.00	7.46	6.45	10.81	14.29	17.65	3.77	4.65	3.03	15.56	17.31	6.19	0.00	-6.19	0.317572	0.657607
N	alternative_acceptor	UBXN11	chr1	-	chr1:26597635-26609139;chr1:26609061-26609139	chr1:26609087-26609139		chr1:26597635-26609060;chr1:26609061-26609086	chr1:26597634-26597635;chr1:26609060-26609061		4.00	0.45	12.12	2.44	0.74	1.61	1.90	24.24	NA	1.63	5.05	2.78	1.54	NA	16.67	3.45	1.65	4.60	0.98	9.68	1.50	2.00	0.62	2.86	1.93	NA	5.71	1.45	1.66	0.00	10.34	7.41	1.12	1.35	1.12	1.27	1.33	10.01	8.68	0.087608	0.586065
K	jcn_only_AA	GMPR2	chr14	+	chr14:24707612-24707832;chr14:24707612-24707794	chr14:24707612-24707802		chr14:24707795-24707802;chr14:24707803-24707832	chr14:24707802-24707803;chr14:24707832-24707833		2.86	0.00	0.00	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.440627	0.706196
N	alternative_acceptor	C17orf62	chr17	-	chr17:80405515-80407045;chr17:80405498-80407045	chr17:80405523-80407045		chr17:80405498-80405514;chr17:80405515-80405522	chr17:80405497-80405498;chr17:80405514-80405515		2.27	4.92	6.86	NA	6.67	NA	0.00	0.00	0.51	0.00	0.00	0.00	0.89	0.63	1.32	0.00	0.00	2.86	0.00	6.85	0.00	NA	5.13	14.29	5.26	2.27	2.99	4.00	8.00	7.50	0.00	5.26	6.25	6.67	5.56	6.06	2.90	1.45	-1.45	0.589496	0.844088
N	alternative_acceptor	METTL17	chr14	+	chr14:21464452-21464685	chr14:21464452-21464664		chr14:21464665-21464685	chr14:21464685-21464686		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
K	jcn_only_AA	FERMT3	chr11	+	chr11:63974287-63974825	chr11:63974287-63974822		chr11:63974823-63974825	chr11:63974825-63974826		69.87	78.40	76.00	83.33	81.58	NA	78.87	83.56	78.23	79.73	79.58	78.92	78.10	80.67	81.94	78.84	79.21	79.53	70.97	72.04	77.78	75.94	73.15	74.36	72.73	79.83	82.41	80.88	82.41	80.85	71.00	76.40	69.05	80.00	78.04	72.50	75.41	75.94	0.52	0.630790	0.838179
N	cassette	DENND3	chr8	+	chr8:142199246-142202429	chr8:142199246-142200382;chr8:142200517-142202429		chr8:142200383-142200516			100.00	100.00	98.68	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	90.62	100.00	95.83	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	89.74	80.00	100.00	100.00	97.75	95.31	100.00	4.69	0.220689	0.709176
N	intron_retention		chr20	-	chr20:57570815-57570987				chr20:57570814-57570815;chr20:57570987-57570988		98.17	97.50	100.00	98.95	100.00	98.54	90.91	77.14	84.62	84.21	80.00	70.00	NA	78.95	100.00	85.71	88.89	58.33	98.28	95.60	100.00	95.56	97.83	97.56	100.00	88.75	96.43	91.23	96.43	94.20	97.80	98.02	97.18	95.16	95.08	98.47	97.50	92.17	-5.33	0.229795	1.000000
K	alternative_acceptor	FZR1	chr19	+	chr19:3532094-3532574	chr19:3532094-3532414		chr19:3532415-3532574	chr19:3532574-3532575		100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	85.29	91.30	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.71	89.47	100.00	89.74	100.00	100.00	0.00	0.984064	0.994790
N	alternative_acceptor		chrX	+	chrX:13722022-13731066;chrX:13722022-13722651;chrX:13722022-13733838	chrX:13722022-13726839		chrX:13722652-13726839;chrX:13726840-13731066;chrX:13731067-13733838	chrX:13726839-13726840;chrX:13731066-13731067;chrX:13733838-13733839		95.24	100.00	92.31	NA	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	94.44	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	95.65	94.12	96.43	96.55	90.00	100.00	100.00	0.00	0.687651	0.881898
N	cassette	DPY30	chr2	-	chr2:32248544-32264347;chr2:32249326-32264347	chr2:32249326-32254662,chr2:32248544-32254662;chr2:32254806-32264347		chr2:32254663-32254805			97.73	100.00	100.00	100.00	97.92	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.74	100.00	100.00	100.00	96.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	95.31	94.74	96.97	100.00	100.00	98.96	100.00	1.04	0.473315	0.770157
K	jcn_only_AD	SMIM19	chr8	+	chr8:42396849-42401611;chr8:42397517-42401611	chr8:42397299-42401611		chr8:42396849-42397298;chr8:42397299-42397516	chr8:42396848-42396849;chr8:42397298-42397299		13.04	17.54	15.00	10.00	14.29	NA	20.69	13.33	23.81	28.57	22.22	12.50	15.00	NA	21.05	NA	11.54	0.00	15.38	16.00	9.52	30.00	11.43	15.38	25.00	10.00	31.71	NA	13.64	NA	11.76	20.00	12.50	16.67	9.68	15.79	16.46	13.04	-3.42	0.050705	0.507362
K	jcn_only_AA	TECR	chr19	+	chr19:14673388-14673952;chr19:14673388-14673985	chr19:14673388-14674017		chr19:14673953-14673985;chr19:14673986-14674017	chr19:14673985-14673986;chr19:14674017-14674018		94.59	98.78	94.44	90.91	95.16	100.00	92.97	93.75	93.75	90.91	91.73	95.76	93.40	91.30	96.97	90.74	91.04	93.18	94.87	91.67	91.89	94.59	97.31	96.77	100.00	100.00	92.00	95.88	93.41	96.24	100.00	90.24	94.59	88.89	93.33	91.24	94.73	94.17	-0.56	0.788353	0.908316
N	jcn_only_AA	SIRT6	chr19	-	chr19:4175211-4175676;chr19:4175109-4175676	chr19:4175149-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		85.71	90.91	82.76	83.33	81.82	83.33	88.00	90.00	86.67	88.89	91.30	81.82	84.62	88.46	93.75	100.00	93.02	92.86	73.91	82.14	87.18	83.33	90.70	92.31	92.31	90.00	89.66	88.89	88.24	73.68	88.57	87.88	82.76	86.67	90.91	87.50	86.31	88.51	2.20	0.514826	0.760908
K	cassette	EPN1	chr19	+	chr19:56200361-56201232	chr19:56200361-56200662;chr19:56200738-56201232		chr19:56200663-56200737			84.31	87.23	77.78	NA	84.38	NA	96.05	96.15	95.12	88.57	88.89	95.45	96.77	90.91	87.23	92.50	91.01	80.95	86.36	92.31	80.00	100.00	82.09	84.62	93.33	92.86	87.76	84.21	88.89	85.71	89.47	78.00	75.00	91.30	90.48	92.31	90.28	91.61	1.33	0.628017	0.864183
K	jcn_only_AA	CDK5RAP1	chr20	-	chr20:31954812-31958304	chr20:31954815-31958304		chr20:31954812-31954814	chr20:31954811-31954812		100.00	100.00	100.00	100.00	100.00	100.00	94.44	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.65	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	90.00	100.00	100.00	100.00	0.00	0.214963	0.663989
N	cassette	ABCC10	chr6	+	chr6:43415676-43416844	chr6:43415676-43416618;chr6:43416765-43416844		chr6:43416619-43416764			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	93.33	100.00	100.00	88.89	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	ZSWIM8	chr10	+	chr10:75559929-75560053				chr10:75559928-75559929;chr10:75560053-75560054		4.23	4.76	9.09	0.00	7.50	NA	0.00	11.11	5.00	0.00	2.78	0.00	7.69	4.76	4.76	3.57	1.72	7.14	3.57	3.28	7.32	8.11	5.17	2.56	0.00	6.12	9.59	8.70	0.00	3.70	5.63	8.77	0.00	6.35	10.00	7.23	1.78	5.20	3.41	0.705108	1.000000
K	alternative_acceptor	BABAM1,CTD-2278I10.6,NDUFA3	chr19	+	chr19:17378337-17379602;chr19:17378337-17379610	chr19:17378337-17379564		chr19:17379565-17379602;chr19:17379603-17379610	chr19:17379602-17379603;chr19:17379610-17379611		21.05	17.39	14.81	NA	18.18	NA	20.45	23.81	23.08	16.67	20.51	19.05	20.41	22.22	17.39	16.00	17.39	14.29	NA	15.38	26.67	NA	27.27	NA	NA	30.00	16.67	18.18	21.74	36.36	0.00	12.50	10.00	15.38	13.33	6.67	18.90	21.63	2.73	0.739877	0.903065
N	alternative_donor	CYTH4	chr22	+	chr22:37706074-37707028;chr22:37706861-37707028	chr22:37705365-37707028		chr22:37705365-37706073;chr22:37706074-37706860	chr22:37705364-37705365;chr22:37706073-37706074		95.40	91.76	93.39	NA	97.78	NA	98.84	98.99	98.75	98.35	98.89	99.61	97.84	99.12	97.47	95.95	98.54	100.00	85.71	97.04	96.34	95.56	95.30	95.76	84.31	96.10	94.43	94.85	96.12	96.75	97.98	95.44	86.67	94.74	95.96	95.54	89.22	97.51	8.30	0.050976	0.397730
N	cassette	ADAM8	chr10	-	chr10:135081623-135082948	chr10:135081623-135082251;chr10:135082367-135082948		chr10:135082252-135082366			96.67	100.00	96.84	100.00	95.65	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.20	100.00	100.00	100.00	100.00	100.00	98.36	100.00	100.00	96.39	91.67	100.00	100.00	98.39	100.00	100.00	0.00	0.595784	0.848084
K	intron_retention	APLP2	chr11	+	chr11:129979445-129980468				chr11:129979444-129979445;chr11:129980468-129980469		88.24	88.00	87.60	NA	81.48	NA	89.20	87.57	92.06	82.75	84.94	80.84	89.49	92.06	89.13	86.43	82.56	80.95	70.00	73.10	74.07	77.88	72.78	77.10	100.00	88.73	87.78	80.49	77.98	72.31	67.71	69.90	NA	77.93	80.31	84.66	89.20	87.91	-1.30	0.217404	1.000000
K	intron_retention	SIGLEC1	chr20	-	chr20:3684739-3686390				chr20:3684738-3684739;chr20:3686390-3686391		12.86	25.00	4.55	NA	NA	66.67	1.75	0.40	0.36	4.17	2.78	2.47	1.48	0.78	1.00	4.84	2.94	0.00	NA	3.28	NA	NA	0.00	8.06	38.10	3.55	2.56	0.00	5.88	13.95	6.90	6.90	NA	18.75	5.00	11.57	13.38	3.42	-9.96	0.704449	1.000000
N	alternative_acceptor	HDAC2	chr6	-	chr6:114262922-114264514	chr6:114262930-114264514		chr6:114262922-114262929	chr6:114262921-114262922		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	MAN1B1	chr9	+	chr9:140001900-140001993;chr9:140001900-140001982	chr9:140001900-140001989		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		6.12	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	2.50	4.69	0.00	0.00	0.00	0.00	4.00	2.22	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	1.25	1.25	0.183991	0.663989
K	intron_retention		chr22	-	chr22:51063893-51064006				chr22:51063892-51063893;chr22:51064006-51064007		6.32	4.35	7.59	3.00	4.84	3.59	0.00	2.15	1.18	0.00	0.97	1.18	1.45	2.74	4.11	0.00	2.99	0.00	5.24	5.26	4.32	6.00	3.51	1.89	1.73	2.78	2.52	3.95	4.31	1.46	7.14	5.88	6.53	5.80	5.71	7.09	3.04	4.02	0.98	0.753259	1.000000
N	cassette	HAUS1	chr18	+	chr18:43700027-43703264;chr18:43685335-43703264	chr18:43700027-43702432,chr18:43685335-43702432;chr18:43702557-43703264		chr18:43702433-43702556			93.33	100.00	89.47	NA	90.00	NA	100.00	100.00	94.74	NA	100.00	NA	95.12	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	NA	95.00	NA	NA	100.00	100.00	NA	93.10	NA	NA	94.74	100.00	NA	94.12	NA	100.00	100.00	0.00	0.834437	0.944391
K	intron_retention	KIAA0368	chr9	-	chr9:114124450-114125867				chr9:114124449-114124450;chr9:114125867-114125868		9.30	8.73	7.50	5.93	11.20	5.86	0.00	3.70	0.00	1.85	1.92	2.44	0.00	0.00	4.44	3.64	4.26	2.04	3.88	6.12	5.10	8.33	4.88	10.81	3.16	8.89	10.53	5.36	4.94	9.66	9.09	8.93	5.04	12.05	12.68	8.57	3.52	7.51	3.99	0.551859	1.000000
N	alternative_donor	ANAPC2	chr9	-	chr9:140070290-140074632;chr9:140070290-140071500;chr9:140070290-140072519	chr9:140070290-140070454		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		10.71	4.76	18.60	5.26	5.26	6.25	4.17	0.00	0.00	0.00	5.00	NA	5.00	0.00	4.00	7.14	4.35	NA	6.25	17.65	6.67	16.67	10.26	20.00	6.00	14.29	15.62	5.56	6.67	8.33	13.64	12.24	4.44	20.00	11.43	16.67	4.88	12.18	7.30	0.227248	0.597907
K	intron_retention	LMNA	chr1	+	chr1:156084703-156084754				chr1:156084702-156084703;chr1:156084754-156084755		94.83	100.00	100.00	100.00	94.29	100.00	96.73	95.41	92.98	96.02	95.81	94.36	96.80	94.41	95.52	95.72	94.78	95.85	97.50	97.35	95.69	93.06	95.38	94.12	95.65	95.59	97.59	95.93	94.75	91.67	94.05	100.00	100.00	95.50	93.65	100.00	97.15	95.12	-2.03	0.040979	1.000000
K	intron_retention		chr2	+	chr2:207026829-207027212				chr2:207026828-207026829;chr2:207027212-207027213		6.82	0.48	1.79	0.42	0.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	0.00	0.21	2.38	0.45	0.88	0.59	0.66	0.00	0.00	0.00	0.00	0.19	0.00	0.00	1.83	0.52	0.00	0.00	0.00	0.10	0.00	-0.10	0.632969	1.000000
K	intron_retention	ISCA2	chr14	+	chr14:74961094-74961528				chr14:74961093-74961094;chr14:74961528-74961529		3.08	0.00	1.49	0.00	2.78	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	3.03	5.08	0.00	NA	6.25	0.00	0.00	0.00	3.75	5.00	0.00	0.00	4.44	4.55	2.27	10.00	0.00	3.33	0.00	1.54	1.54	0.564205	1.000000
K	alternative_first_exon	CSNK2B,XXbac-BPG32J3.22	chr6	+	chr6:31634174-31634597,chr6:31634265-31634597;chr6:31633271-31634597	chr6:31633986-31634597	chr6:31634132-31634173;chr6:31633013-31633270	chr6:31633841-31633985			97.37	98.68	97.59	93.94	96.83	92.86	99.08	98.90	100.00	97.26	99.08	100.00	99.27	98.99	100.00	99.11	100.00	100.00	93.02	90.91	96.77	93.94	97.65	91.67	100.00	95.06	97.56	90.62	98.78	97.56	95.35	96.15	97.06	98.21	95.00	94.92	98.88	96.36	-2.52	0.306112	0.521457
K	intron_retention		chr11	+	chr11:47436027-47436327				chr11:47436026-47436027;chr11:47436327-47436328		0.00	0.00	3.53	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	8.00	8.70	5.88	0.00	3.64	4.88	2.04	2.17	0.00	2.08	6.59	0.00	1.39	5.15	1.59	0.00	1.04	1.04	0.418724	1.000000
N	jcn_only_AA	SRRT	chr7	+	chr7:100482460-100482552;chr7:100482460-100482543	chr7:100482460-100482548		chr7:100482544-100482548;chr7:100482549-100482552	chr7:100482548-100482549;chr7:100482552-100482553		4.69	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.26	2.80	9.52	0.00	0.00	1.52	0.00	0.00	0.00	0.748739	0.887335
K	alternative_donor	NDUFAF3	chr3	+	chr3:49058833-49059778;chr3:49059655-49059778	chr3:49059218-49059778		chr3:49058833-49059217;chr3:49059218-49059654	chr3:49058832-49058833;chr3:49059217-49059218		3.70	0.00	0.00	NA	4.76	NA	2.22	0.00	0.00	0.00	2.13	0.00	0.00	0.00	3.33	2.86	2.50	0.00	7.69	0.00	0.00	0.00	0.00	0.00	NA	4.35	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.721079	0.885082
N	jcn_only_AA	DDIT3	chr12	-	chr12:57911192-57911488;chr12:57911379-57911488;chr12:57911222-57911488;chr12:57911326-57911488	chr12:57911208-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		31.82	25.93	25.58	15.38	18.75	20.00	10.71	17.78	14.17	10.00	14.29	NA	16.67	21.33	20.00	11.76	NA	NA	30.91	22.68	29.17	22.22	17.65	19.23	30.00	20.71	23.91	15.00	17.86	13.64	29.91	33.93	27.47	20.83	34.09	18.75	26.70	22.00	-4.70	0.918366	0.971566
N	alternative_acceptor	UBL7	chr15	-	chr15:74740900-74741526;chr15:74740942-74741526	chr15:74740929-74741526		chr15:74740900-74740928;chr15:74740929-74740941	chr15:74740899-74740900;chr15:74740928-74740929		0.00	0.00	4.35	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	4.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.56	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.494083	0.791230
K	alternative_donor	MRPL51	chr12	-	chr12:6602139-6602882;chr12:6602139-6602223;chr12:6602139-6602839	chr12:6602139-6602624		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		2.94	2.90	1.79	0.00	1.82	3.57	3.03	0.00	2.38	2.08	1.47	0.00	2.27	0.00	1.96	1.61	4.11	0.00	3.28	3.33	1.41	0.00	1.64	0.00	5.45	6.25	2.00	0.00	2.74	2.70	4.76	2.13	4.00	2.86	0.00	0.00	3.15	3.13	-0.02	0.605322	0.814166
K	intron_retention		chr19	+	chr19:50016731-50017138				chr19:50016730-50016731;chr19:50017138-50017139		9.69	7.15	17.74	0.88	2.51	0.60	0.74	0.39	0.24	0.09	0.35	0.00	1.31	2.03	0.88	0.17	0.57	0.10	4.23	5.50	4.41	0.75	2.93	0.93	11.41	4.04	11.54	0.50	2.15	0.14	1.08	5.61	3.04	1.26	2.76	0.79	3.64	3.04	-0.60	0.926839	1.000000
K	jcn_only_AD	RPL8,ZNF250	chr8	-	chr8:146017526-146017650;chr8:146017526-146017750	chr8:146017526-146017629		chr8:146017630-146017650;chr8:146017651-146017750	chr8:146017650-146017651;chr8:146017750-146017751		4.69	5.88	6.25	6.77	3.82	4.59	4.96	4.88	4.55	3.39	2.66	1.46	2.59	0.00	3.06	3.95	2.43	3.02	3.52	4.17	6.94	5.15	2.78	4.43	3.12	10.71	3.85	2.63	1.37	1.28	6.33	4.24	5.41	5.03	2.82	3.06	4.24	4.79	0.54	0.580344	0.790420
K	intron_retention	FMNL1	chr17	+	chr17:43311099-43311438				chr17:43311098-43311099;chr17:43311438-43311439		2.34	18.18	3.23	16.67	27.27	NA	0.00	0.78	0.00	0.00	0.98	0.00	1.82	1.21	1.47	0.00	0.63	0.00	20.83	2.36	28.12	0.00	5.41	0.00	26.83	2.88	3.87	2.63	4.29	5.56	6.78	5.11	36.36	2.56	6.12	2.38	19.50	2.35	-17.16	0.100492	1.000000
N	cassette	CTC-429P9.4,SMIM7	chr19	-	chr19:16764937-16770769;chr19:16758073-16770769	chr19:16758073-16770205,chr19:16764937-16770205;chr19:16770259-16770769		chr19:16770206-16770258			89.47	100.00	96.36	100.00	100.00	100.00	98.18	98.46	100.00	96.59	100.00	95.74	97.44	100.00	100.00	97.41	96.77	100.00	100.00	100.00	100.00	96.67	95.71	100.00	100.00	100.00	100.00	98.21	98.08	98.21	90.91	93.02	100.00	95.35	100.00	93.88	100.00	99.23	-0.77	0.228181	0.709176
K	jcn_only_AD	STX5	chr11	-	chr11:62592038-62592507	chr11:62592038-62592496		chr11:62592497-62592507	chr11:62592507-62592508		5.06	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	1.60	0.00	2.41	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	1.78	1.78	0.058139	0.542509
K	intron_retention	ARHGAP10	chr4	+	chr4:148993331-148993508				chr4:148993330-148993331;chr4:148993508-148993509		100.00	95.83	100.00	100.00	97.01	100.00	100.00	NA	NA	100.00	97.67	96.55	100.00	100.00	NA	97.30	100.00	100.00	100.00	95.00	100.00	97.92	97.96	96.77	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.631560	1.000000
K	cassette	MS4A4A	chr11	+	chr11:60068531-60073572	chr11:60068531-60070031;chr11:60070191-60073572		chr11:60070032-60070190			90.35	93.15	90.80	95.00	95.33	91.89	96.80	90.35	89.16	96.68	95.56	95.42	93.24	96.97	NA	95.33	96.63	98.70	90.08	90.27	92.31	100.00	95.21	93.88	100.00	94.50	96.55	92.86	94.58	93.91	90.28	92.77	88.43	96.06	96.81	95.40	93.19	90.35	-2.84	0.495401	0.779619
N	alternative_acceptor	ARRDC1	chr9	+	chr9:140509453-140509548;chr9:140509453-140509525	chr9:140509453-140509505		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		12.90	15.57	16.00	22.73	16.67	11.36	10.00	11.76	10.53	NA	6.67	NA	8.33	9.52	13.33	NA	6.67	NA	14.78	8.33	15.79	NA	13.89	NA	18.02	14.29	22.73	NA	17.86	20.00	27.27	15.79	16.81	NA	12.50	25.00	15.18	12.33	-2.85	0.977551	0.994346
N	jcn_only_AA	CORO7,CORO7-PAM16	chr16	-	chr16:4440448-4445289;chr16:4412133-4445289;chr16:4439278-4445289	chr16:4438633-4445289					91.38	100.00	100.00	NA	78.26	NA	88.51	89.01	89.47	90.48	91.46	88.46	89.72	89.66	89.47	90.32	91.14	90.00	NA	81.48	68.75	100.00	92.00	100.00	100.00	95.45	92.68	92.31	85.11	91.67	91.49	90.32	84.62	93.48	87.23	91.07	89.72	90.52	0.80	0.467893	0.728997
K	intron_retention	PPP1R12C	chr19	-	chr19:55607309-55607418				chr19:55607308-55607309;chr19:55607418-55607419		2.50	0.00	1.37	0.00	4.65	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	7.14	0.00	0.00	4.00	4.05	0.00	11.90	0.00	1.12	2.86	3.45	4.35	2.27	4.17	0.00	5.00	3.17	1.92	0.00	0.00	0.00	0.601079	1.000000
K	intron_retention		chr3	-	chr3:127292632-127294027				chr3:127292631-127292632;chr3:127294027-127294028		6.90	9.68	5.45	1.83	2.68	1.74	0.00	1.61	0.00	0.61	0.62	0.00	0.00	0.00	3.45	0.66	0.00	0.00	7.14	7.14	2.04	4.11	4.76	4.39	4.35	3.85	6.25	1.92	2.48	0.70	10.96	7.55	9.64	3.24	5.69	4.17	5.74	5.38	-0.37	0.630345	1.000000
K	intron_retention		chr22	-	chr22:50687320-50687531				chr22:50687319-50687320;chr22:50687531-50687532		18.18	24.32	25.00	NA	25.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	20.00	0.00	6.25	0.00	NA	18.18	17.65	NA	21.05	NA	25.00	11.76	25.00	0.00	18.75	0.00	NA	31.25	27.27	20.00	21.43	11.54	24.32	14.97	-9.35	0.880635	1.000000
N	alternative_acceptor	SCN1B	chr19	+	chr19:4033579-4047753	chr19:4033579-4037371		chr19:4037372-4047753	chr19:4047753-4047754		100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	91.67	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AD	ATP13A1,MATK	chr19	-	chr19:19762607-19763403	chr19:19762607-19763359		chr19:19763360-19763403	chr19:19763403-19763404		0.00	15.00	0.00	NA	12.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	1.52	0.00	1.41	0.00	NA	0.00	0.00	6.67	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.90	6.67	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.682002	0.836094
K	alternative_acceptor	CTDNEP1,RP1-4G17.5	chr17	-	chr17:7150497-7150595	chr17:7150502-7150595		chr17:7150497-7150501	chr17:7150496-7150497		93.10	100.00	100.00	100.00	90.62	NA	100.00	100.00	100.00	100.00	95.83	100.00	95.59	100.00	100.00	100.00	97.67	96.55	100.00	95.45	100.00	100.00	100.00	93.75	NA	100.00	95.45	90.00	98.08	100.00	90.48	90.00	93.33	100.00	90.91	100.00	100.00	97.72	-2.28	0.574728	0.838844
N	jcn_only_AD	SMS	chrX	+	chrX:21958992-21985313;chrX:21985164-21985313	chrX:21959486-21985313		chrX:21958992-21959485;chrX:21959486-21985163	chrX:21958991-21958992;chrX:21959485-21959486		0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.12	NA	0.00	0.00	0.00	1.27	0.00	9.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.92	1.38	0.00	0.00	0.00	0.00	0.355515	0.657607
K	cassette	ARMCX6	chrX	-	chrX:100871757-100872492	chrX:100871757-100872281;chrX:100872361-100872492		chrX:100872282-100872360			0.00	0.00	4.55	NA	0.00	NA	2.38	2.27	0.00	6.06	2.90	9.38	4.44	2.78	0.00	8.89	6.35	14.63	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	4.35	0.00	0.00	0.00	0.00	0.00	2.27	0.00	1.14	1.14	0.645662	0.869938
K	intron_retention	MYO9B	chr19	+	chr19:17320519-17321523				chr19:17320518-17320519;chr19:17321523-17321524		5.97	3.02	6.29	3.23	3.40	5.05	3.21	2.73	3.74	0.51	2.09	0.80	4.98	0.90	6.08	1.94	1.50	1.96	1.79	4.20	3.66	3.72	2.28	5.90	6.80	6.17	4.22	3.41	4.69	2.78	7.23	4.32	5.15	5.13	3.04	2.90	4.10	5.08	0.99	0.955746	1.000000
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75651708-75651960;chr15:75651767-75651960	chr15:75651780-75651960		chr15:75651708-75651766;chr15:75651767-75651779	chr15:75651707-75651708;chr15:75651766-75651767		20.00	11.11	0.00	8.33	12.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	12.50	0.00	9.52	27.78	NA	0.00	0.00	5.00	0.00	10.00	0.00	NA	0.00	7.41	6.98	5.55	5.00	-0.55	0.794423	0.910039
K	intron_retention	NISCH	chr3	+	chr3:52524850-52525367				chr3:52524849-52524850;chr3:52525367-52525368		14.06	4.90	15.38	NA	10.17	NA	12.16	8.33	0.00	0.00	22.45	NA	8.84	13.79	10.00	11.11	15.49	NA	6.06	10.81	7.14	10.00	16.33	NA	9.52	9.09	9.68	NA	25.35	NA	12.50	8.11	7.14	0.00	13.33	8.70	7.99	11.66	3.67	0.619345	1.000000
K	intron_retention		chr2	+	chr2:201983625-201983750				chr2:201983624-201983625;chr2:201983750-201983751		93.10	90.24	100.00	89.66	87.76	83.12	NA	70.00	54.55	NA	75.00	NA	NA	68.75	80.00	71.43	NA	NA	82.35	100.00	80.00	83.33	95.00	NA	64.29	75.00	NA	85.00	85.71	70.00	88.00	84.00	84.38	90.91	89.47	79.17	83.36	81.50	-1.86	0.825577	1.000000
K	cassette	SORBS3	chr8	+	chr8:22422868-22424173;chr8:22423386-22424173	chr8:22423386-22423857,chr8:22422868-22423857;chr8:22423998-22424173		chr8:22423858-22423997			71.43	90.32	NA	NA	86.67	NA	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	81.82	80.65	85.71	80.77	100.00	NA	NA	100.00	NA	NA	100.00	NA	86.36	89.47	81.48	95.16	100.00	4.84	0.992398	0.997468
N	alternative_acceptor	ADAM28	chr8	+	chr8:24197082-24199110	chr8:24197082-24198730		chr8:24198731-24199110	chr8:24199110-24199111		32.00	33.33	40.97	NA	21.05	NA	0.00	4.55	3.85	12.50	0.00	44.74	3.33	6.67	10.00	3.70	3.57	31.25	NA	20.45	24.00	23.81	12.82	34.09	NA	24.00	31.73	30.00	13.64	20.00	22.58	36.45	20.00	17.02	20.69	21.69	11.66	21.52	9.85	0.655821	0.874938
K	intron_retention	TBC1D10B	chr16	-	chr16:30369895-30369983				chr16:30369894-30369895;chr16:30369983-30369984		6.98	0.00	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	2.67	1.23	0.00	0.00	0.00	9.09	6.06	0.00	0.00	0.00	2.04	0.00	1.33	1.33	0.276512	1.000000
N	alternative_donor	QSOX1	chr1	+	chr1:180166012-180166467;chr1:180165930-180166467;chr1:180165735-180166467	chr1:180166026-180166467		chr1:180165735-180165929;chr1:180165930-180166011;chr1:180166012-180166025	chr1:180165734-180165735;chr1:180165929-180165930;chr1:180166011-180166012		63.70	62.61	63.01	46.67	47.52	43.24	74.02	71.43	64.26	61.11	65.41	55.56	73.45	63.36	66.45	55.13	50.00	56.47	58.56	62.25	48.90	56.72	70.29	58.57	66.25	57.30	64.41	66.04	56.14	54.67	61.39	61.89	60.00	48.43	62.05	64.73	64.43	62.80	-1.63	0.457039	0.715132
K	cassette	RBM3	chrX	+	chrX:48434056-48434701	chrX:48434056-48434309;chrX:48434472-48434701		chrX:48434310-48434471			3.88	2.50	4.30	2.08	2.22	0.00	2.29	5.13	4.94	1.23	1.18	0.58	2.24	4.14	4.72	1.44	1.38	0.97	0.00	5.50	2.44	3.48	3.00	3.51	0.00	7.94	6.93	3.78	6.71	3.97	6.52	9.88	3.70	2.79	2.78	2.38	2.27	5.31	3.05	0.001574	0.133542
K	alternative_acceptor	RPL18	chr19	-	chr19:49120673-49121047	chr19:49120681-49121047		chr19:49120673-49120680	chr19:49120672-49120673		98.56	97.55	98.23	96.87	97.83	98.09	98.67	100.00	98.25	97.67	98.53	100.00	98.55	100.00	98.34	100.00	98.99	100.00	95.72	94.78	95.79	97.81	97.72	97.74	97.15	100.00	99.06	100.00	97.71	97.90	94.01	96.12	95.44	98.13	97.44	98.11	97.35	99.28	1.93	0.590260	0.844088
N	alternative_acceptor	NF2,TOM1	chr22	+	chr22:35734782-35741717	chr22:35734782-35737197		chr22:35737198-35741717	chr22:35741717-35741718		4.33	2.08	6.57	2.06	1.05	1.61	1.27	1.49	0.99	1.27	0.72	1.01	2.06	1.34	3.23	2.86	1.35	2.13	0.69	2.55	1.34	4.00	3.09	7.45	5.88	5.03	5.81	5.19	3.57	4.65	1.79	2.43	1.39	7.01	4.86	10.51	1.73	2.17	0.44	0.607906	0.849858
N	alternative_acceptor	C7orf49	chr7	-	chr7:134852560-134853720	chr7:134853620-134853720		chr7:134852560-134853619	chr7:134852559-134852560		100.00	86.67	82.35	NA	70.00	96.67	66.67	95.56	97.67	85.71	66.67	93.75	70.00	97.06	100.00	87.50	NA	87.50	NA	94.29	88.89	80.00	66.67	100.00	80.00	94.74	86.67	96.30	66.67	100.00	98.15	96.23	100.00	93.55	90.91	97.70	80.00	96.31	16.31	0.055551	0.570243
N	jcn_only_AD	CCNL2	chr1	-	chr1:1500297-1510684	chr1:1500297-1509857		chr1:1509858-1510684	chr1:1510684-1510685		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr1	-	chr1:52255106-52255239				chr1:52255105-52255106;chr1:52255239-52255240		2.19	3.05	4.78	2.19	1.82	1.79	0.00	1.49	1.56	0.00	1.85	2.27	0.00	1.39	1.33	3.03	0.00	0.00	1.90	2.41	3.07	5.00	3.01	5.13	2.79	4.86	2.94	2.94	2.78	2.82	2.47	4.95	1.55	4.86	3.68	5.88	1.73	2.30	0.57	0.936753	1.000000
K	jcn_only_AA	ODF3B	chr22	-	chr22:50969258-50969365	chr22:50969282-50969365		chr22:50969258-50969281	chr22:50969257-50969258		96.00	100.00	94.74	NA	100.00	100.00	100.00	96.23	100.00	NA	100.00	100.00	100.00	100.00	94.83	83.33	100.00	100.00	97.14	95.77	93.33	NA	100.00	NA	100.00	95.00	95.41	100.00	100.00	100.00	96.10	96.43	100.00	100.00	92.31	100.00	100.00	96.05	-3.95	0.007274	0.450187
K	intron_retention	EIF4E2	chr2	+	chr2:233431925-233433654				chr2:233431924-233431925;chr2:233433654-233433655		18.18	15.91	20.00	10.53	7.85	7.05	7.04	1.32	3.64	3.66	6.31	2.82	10.59	3.37	5.71	5.80	5.36	4.11	10.10	15.87	8.97	15.25	13.54	13.64	6.08	14.49	14.49	5.08	5.07	4.35	22.78	23.88	14.95	11.84	17.50	15.29	10.34	15.18	4.84	0.950527	1.000000
K	intron_retention	PLD3	chr19	+	chr19:40875866-40876024				chr19:40875865-40875866;chr19:40876024-40876025		54.02	73.97	50.00	61.54	62.50	64.29	53.62	56.46	53.09	58.77	54.48	55.77	52.41	54.65	53.04	55.70	56.12	53.42	56.60	47.77	57.45	53.92	57.27	52.90	72.50	53.28	55.77	60.81	58.02	65.38	52.08	47.43	45.76	55.88	54.46	60.45	55.11	53.65	-1.46	0.448378	1.000000
K	jcn_only_AA	CGRRF1	chr14	+	chr14:55004548-55004835	chr14:55004548-55004780		chr14:55004781-55004835	chr14:55004835-55004836		100.00	100.00	100.00	92.31	93.75	80.00	100.00	92.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	95.24	95.65	100.00	100.00	89.29	100.00	100.00	100.00	100.00	100.00	100.00	96.15	86.67	90.91	85.71	94.44	100.00	100.00	100.00	92.86	92.11	100.00	97.22	-2.78	0.089903	0.663989
N	cassette	UBE2F,UBE2F-SCLY	chr2	+	chr2:238896635-238912009;chr2:238896635-238933982;chr2:238881868-238925207;chr2:238881868-238933982;chr2:238896635-238925207	chr2:238881868-238903385,chr2:238896635-238903385;chr2:238903452-238912009,chr2:238903452-238925207,chr2:238903452-238933982		chr2:238903386-238903451			89.25	96.49	88.24	85.71	95.00	86.21	96.05	97.71	97.56	94.32	95.56	99.12	95.71	92.11	95.29	97.87	93.90	95.24	100.00	95.24	94.64	100.00	95.65	94.29	100.00	98.68	96.00	96.30	98.25	100.00	83.93	93.75	87.88	95.38	95.08	90.91	96.27	93.67	-2.59	0.298858	0.709176
N	alternative_acceptor	PTOV1	chr19	+	chr19:50363594-50363889;chr19:50363594-50363822	chr19:50363594-50363870		chr19:50363823-50363870;chr19:50363871-50363889	chr19:50363870-50363871;chr19:50363889-50363890		90.32	90.96	86.21	85.71	89.02	89.15	83.33	NA	NA	90.00	80.00	NA	84.21	NA	83.33	81.82	81.82	NA	91.81	86.36	93.94	78.57	83.78	NA	90.58	92.31	85.71	75.00	85.71	83.33	90.91	87.10	89.16	78.95	80.77	80.95	89.87	90.61	0.74	0.429610	0.740984
N	cassette	PRPF38A	chr1	+	chr1:52879664-52880433	chr1:52879664-52880292;chr1:52880320-52880433		chr1:52880293-52880319			93.75	NA	86.36	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	84.21	88.89	90.91	100.00	100.00	100.00	100.00	96.88	-3.12	0.427353	0.735581
N	alternative_acceptor	ADAMTSL4	chr1	+	chr1:150530626-150530948;chr1:150530626-150530732	chr1:150530626-150530712		chr1:150530713-150530732;chr1:150530733-150530948	chr1:150530732-150530733;chr1:150530948-150530949		5.71	4.55	17.86	0.00	6.45	2.63	0.00	0.00	3.23	0.00	0.00	NA	0.00	5.00	5.36	NA	0.00	NA	0.00	6.25	7.69	NA	5.56	NA	4.44	12.00	13.64	11.76	3.85	NA	NA	13.33	4.76	NA	7.69	10.00	2.22	5.71	3.49	0.155678	0.660713
K	cassette	PPP1R21	chr2	+	chr2:48725875-48734407	chr2:48725875-48732702;chr2:48732736-48734407		chr2:48732703-48732735			97.06	100.00	94.74	NA	100.00	NA	100.00	88.24	95.24	NA	100.00	NA	100.00	91.30	100.00	NA	100.00	NA	100.00	90.91	100.00	NA	100.00	NA	100.00	100.00	92.59	NA	91.67	NA	100.00	94.29	95.65	100.00	100.00	100.00	100.00	94.18	-5.82	0.075445	0.640086
K	intron_retention	ZYX	chr7	+	chr7:143080416-143085311				chr7:143080415-143080416;chr7:143085311-143085312		3.06	3.04	2.99	2.50	1.35	1.59	0.21	0.32	0.00	0.56	0.17	0.00	0.75	0.00	0.00	0.00	0.00	0.00	2.82	2.26	1.29	1.02	1.50	3.06	8.56	2.11	1.39	2.27	1.03	1.10	3.64	3.38	6.57	2.55	2.85	2.49	2.93	2.18	-0.75	0.605273	1.000000
K	jcn_only_AA	HMG20B	chr19	+	chr19:3573799-3574338;chr19:3573799-3573900;chr19:3573799-3574367	chr19:3573799-3574380		chr19:3573901-3574338;chr19:3574339-3574367;chr19:3574368-3574380	chr19:3574338-3574339;chr19:3574367-3574368;chr19:3574380-3574381		92.59	100.00	96.30	92.31	100.00	NA	98.53	94.44	100.00	100.00	100.00	97.67	100.00	100.00	100.00	96.77	100.00	100.00	94.12	100.00	100.00	94.12	93.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	95.12	100.00	90.48	95.45	100.00	100.00	98.65	-1.35	0.417242	0.689626
K	jcn_only_AA	ZFAND2A	chr7	-	chr7:1192861-1195088;chr7:1192878-1195088	chr7:1192768-1195088		chr7:1192768-1192860;chr7:1192861-1192877	chr7:1192767-1192768;chr7:1192860-1192861		5.08	0.00	8.16	6.93	5.88	11.76	0.00	2.44	3.92	6.25	0.00	6.67	0.00	5.26	2.56	7.50	0.00	6.25	12.07	7.50	6.78	10.34	4.76	7.14	8.00	6.56	11.11	7.69	10.26	7.95	6.74	8.75	4.40	8.97	5.26	6.41	2.20	5.91	3.71	0.515308	0.760908
N	jcn_only_AA	NXF1	chr11	-	chr11:62561939-62562406;chr11:62561871-62562406	chr11:62561913-62562406		chr11:62561871-62561912;chr11:62561913-62561938	chr11:62561870-62561871;chr11:62561912-62561913		83.12	80.71	88.24	83.54	87.10	91.67	100.00	91.23	92.31	88.89	90.91	85.19	93.55	88.33	93.55	90.00	88.46	90.48	89.66	93.38	91.15	88.89	88.89	89.92	87.32	89.92	87.04	92.54	94.44	90.45	89.57	89.89	89.57	87.23	82.76	85.78	89.61	89.75	0.13	0.776338	0.900876
N	alternative_acceptor	CPT2,DPH2	chr1	+	chr1:53676992-53678935	chr1:53676992-53678452		chr1:53678453-53678935	chr1:53678935-53678936		10.26	3.39	5.88	7.69	5.13	9.09	0.00	0.00	2.44	0.00	1.72	0.00	0.00	0.00	2.78	0.00	2.13	0.00	4.76	2.78	4.35	0.00	5.13	9.09	4.17	4.65	8.33	4.76	3.12	5.00	13.04	4.76	8.33	3.03	2.08	6.25	3.78	3.71	-0.07	0.530529	0.812180
K	cassette	NDUFV1	chr11	+	chr11:67374548-67376022	chr11:67374548-67375866;chr11:67375950-67376022		chr11:67375867-67375949			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	MNDA	chr1	+	chr1:158817680-158818979;chr1:158817876-158818979	chr1:158817707-158818979		chr1:158817680-158817706;chr1:158817707-158817875	chr1:158817679-158817680;chr1:158817706-158817707		94.99	97.70	95.24	98.33	100.00	94.52	95.93	93.15	95.44	93.10	94.05	94.09	94.42	93.93	94.22	95.00	94.12	93.23	93.72	92.78	91.12	92.45	94.74	95.29	95.01	95.30	93.88	96.71	94.12	94.09	94.64	94.04	92.20	96.08	91.94	95.61	94.72	94.28	-0.43	0.448943	0.706163
K	intron_retention	SLC35B1	chr17	-	chr17:47780657-47781461				chr17:47780656-47780657;chr17:47781461-47781462		4.17	1.94	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	1.35	1.67	2.67	0.00	1.37	0.00	0.93	0.00	0.00	0.00	0.907432	1.000000
K	alternative_acceptor	SPAG7	chr17	-	chr17:4864149-4871014	chr17:4869615-4871014		chr17:4864149-4869614	chr17:4864148-4864149		0.00	1.82	1.45	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.84	1.16	0.69	0.00	4.35	0.00	1.72	0.00	1.35	0.00	3.70	0.00	1.30	0.00	1.89	0.00	3.70	2.00	5.00	2.38	2.27	1.79	2.76	0.00	-2.76	0.074429	0.585944
K	intron_retention	GDI1	chrX	+	chrX:153670776-153670866				chrX:153670775-153670776;chrX:153670866-153670867		1.37	5.22	1.40	1.12	1.33	2.44	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.69	0.00	0.00	0.00	0.00	1.52	2.11	3.94	0.74	1.98	0.70	0.00	1.11	0.96	0.75	0.49	1.35	3.40	4.44	7.84	1.00	1.67	1.26	0.76	1.24	0.48	0.913916	1.000000
N	jcn_only_AA	FAM65A	chr16	+	chr16:67574405-67574481;chr16:67574405-67574454	chr16:67574405-67574505		chr16:67574455-67574481;chr16:67574482-67574505	chr16:67574481-67574482;chr16:67574505-67574506		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.76	NA	9.09	3.03	0.00	0.00	0.00	3.85	NA	0.00	NA	NA	4.17	NA	0.00	2.63	0.00	0.00	0.00	0.00	0.373901	0.663989
K	alternative_acceptor	APTX	chr9	-	chr9:32973651-32974455	chr9:32973687-32974455		chr9:32973651-32973686	chr9:32973650-32973651		0.00	0.00	0.00	0.00	6.06	6.67	7.14	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.76	0.00	NA	6.67	0.00	0.00	11.76	4.00	7.14	8.70	0.00	13.64	0.00	10.00	3.85	6.25	0.00	5.88	3.45	11.11	4.35	6.28	0.00	-6.28	0.113736	0.605363
K	intron_retention	IGFLR1	chr19	-	chr19:36230528-36230610				chr19:36230527-36230528;chr19:36230610-36230611		2.41	4.71	9.89	2.25	5.79	2.27	0.64	0.00	1.23	0.00	2.90	0.00	0.55	0.00	3.70	0.00	1.21	0.00	2.82	1.37	5.36	1.82	6.13	1.23	2.26	0.00	2.73	4.21	5.22	1.76	2.04	3.89	4.03	0.00	4.72	3.17	2.54	0.69	-1.85	0.312358	1.000000
K	intron_retention	TSTA3	chr8	-	chr8:144698391-144698736				chr8:144698390-144698391;chr8:144698736-144698737		8.70	0.00	10.53	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.67	0.00	0.00	0.00	0.00	5.00	0.00	5.88	0.00	0.00	13.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AD	RPL8	chr8	-	chr8:146017526-146017650;chr8:146017526-146017629	chr8:146017526-146017750		chr8:146017630-146017650;chr8:146017651-146017750	chr8:146017650-146017651;chr8:146017750-146017751		95.31	92.31	92.50	93.23	96.18	94.50	94.61	95.12	95.45	96.13	97.10	98.54	95.56	100.00	96.94	94.83	97.01	96.64	96.48	95.83	91.71	94.85	96.76	95.57	96.88	89.29	96.15	96.62	98.63	98.72	93.67	95.76	94.21	94.97	97.18	96.51	95.09	95.22	0.13	0.932264	0.961807
N	alternative_acceptor	PILRA	chr7	+	chr7:99997236-99999620;chr7:99997236-100014955;chr7:99997236-99997524;chr7:99997236-100001371;chr7:99997236-100006076;chr7:99997236-100001374;chr7:99997236-99997407	chr7:99997236-99997445		chr7:99997408-99997445;chr7:99997446-99997524;chr7:99997525-99999620;chr7:99999621-100001371;chr7:100001372-100001374;chr7:100001375-100006076;chr7:100006077-100014955	chr7:99997445-99997446;chr7:99997524-99997525;chr7:99999620-99999621;chr7:100001371-100001372;chr7:100001374-100001375;chr7:100006076-100006077;chr7:100014955-100014956		0.00	3.23	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	3.57	4.00	5.41	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	3.45	6.67	3.45	3.70	0.00	0.00	0.00	3.40	0.00	-3.40	0.505529	0.796066
N	alternative_acceptor	MOV10	chr1	+	chr1:113241412-113242306;chr1:113241412-113242079	chr1:113241412-113242129		chr1:113242080-113242129;chr1:113242130-113242306	chr1:113242129-113242130;chr1:113242306-113242307		1.31	0.00	1.92	NA	4.17	0.00	0.00	0.78	0.00	NA	0.00	7.41	0.00	2.46	0.95	0.00	0.00	0.00	0.00	0.99	0.00	0.00	0.00	2.99	4.76	0.93	4.08	6.25	4.76	1.55	1.09	0.00	0.00	11.11	0.00	1.40	0.00	1.04	1.04	0.595202	0.845180
K	intron_retention	LMBR1L	chr12	-	chr12:49491523-49491726				chr12:49491522-49491523;chr12:49491726-49491727		4.17	8.93	3.57	0.00	2.86	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	4.11	2.00	3.61	NA	3.03	0.00	5.60	0.00	7.94	8.33	0.00	0.00	2.99	3.45	6.17	0.00	3.45	2.78	4.86	1.00	-3.86	0.413647	1.000000
K	intron_retention	PRPF40A	chr2	-	chr2:153515704-153515783				chr2:153515703-153515704;chr2:153515783-153515784		2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	7.14	4.76	0.00	0.00	0.00	0.00	1.06	1.06	0.651467	1.000000
K	alternative_acceptor	SNRPB	chr20	-	chr20:2442440-2443281	chr20:2442586-2443281		chr20:2442440-2442585	chr20:2442439-2442440		53.55	65.83	67.83	57.14	59.89	54.04	61.76	52.54	65.00	54.14	60.29	58.93	66.23	54.00	63.27	61.71	60.23	61.11	69.34	63.16	64.35	70.08	69.19	64.84	54.86	59.72	68.35	57.52	59.15	55.88	63.06	71.77	65.89	64.84	71.43	66.48	65.86	56.86	-9.00	0.053291	0.570243
N	alternative_acceptor	LAMTOR4	chr7	+	chr7:99751141-99751489;chr7:99751141-99753198;chr7:99751141-99753225	chr7:99751141-99751472		chr7:99751473-99751489;chr7:99751490-99753198;chr7:99753199-99753225	chr7:99751489-99751490;chr7:99753198-99753199;chr7:99753225-99753226		5.13	6.90	5.41	2.82	5.00	2.37	2.86	0.00	3.85	0.00	1.59	0.00	2.70	0.00	4.00	0.00	1.61	0.00	5.74	11.54	2.00	0.00	2.82	0.00	8.13	12.50	8.16	0.00	3.64	1.64	8.00	7.50	7.55	3.23	6.90	2.50	6.32	6.56	0.24	0.828172	0.940678
K	alternative_last_exon	C11orf98,LBHD1,RP11-831H9.11	chr11	-	chr11:62430611-62430707,chr11:62430615-62430707;chr11:62417472-62430707	chr11:62430632-62430707	chr11:62414320-62417471	chr11:62430288-62430631			98.52	96.89	99.35	92.63	92.82	93.08	98.68	98.94	99.10	98.11	98.77	96.30	98.92	98.99	99.07	98.65	98.99	95.65	97.25	99.29	96.01	98.04	98.23	92.59	96.01	99.17	94.81	98.28	98.46	94.44	96.39	98.02	97.42	97.26	99.00	98.44	97.34	98.97	1.63	0.137437	0.344715
N	cassette	ANXA2	chr15	-	chr15:60678286-60689456;chr15:60685640-60689456;chr15:60682517-60689456;chr15:60682517-60690141;chr15:60678286-60690141;chr15:60685640-60690141	chr15:60682517-60688349,chr15:60678286-60688349,chr15:60685640-60688349;chr15:60688627-60689456,chr15:60688627-60690141		chr15:60688350-60688626			1.47	1.53	0.77	14.79	5.78	30.65	1.26	1.30	1.01	3.95	1.74	2.86	0.95	1.81	1.38	4.57	1.67	2.75	3.16	1.14	2.54	6.05	2.80	5.07	0.00	0.64	0.55	7.21	3.74	6.02	0.94	1.41	3.41	3.09	2.15	2.52	1.40	1.22	-0.18	0.408810	0.724493
K	intron_retention	FMNL1	chr17	+	chr17:43317993-43318495				chr17:43317992-43317993;chr17:43318495-43318496		6.32	11.67	7.74	NA	9.26	NA	0.93	0.69	1.00	1.15	1.34	0.00	1.70	2.14	4.27	0.82	1.46	0.00	16.67	2.69	2.08	5.77	7.69	12.50	31.11	3.76	8.33	6.78	7.34	0.00	6.48	9.39	11.11	9.26	6.95	5.71	11.39	3.22	-8.17	0.210134	1.000000
K	intron_retention	DDIT3	chr12	-	chr12:57911222-57911488				chr12:57911221-57911222;chr12:57911488-57911489		18.18	21.57	21.95	24.14	21.21	23.81	10.71	5.13	0.96	14.29	10.00	NA	4.76	7.81	7.25	6.25	NA	NA	15.56	15.73	20.93	14.63	15.15	22.22	48.15	9.17	20.45	32.00	20.69	17.39	15.43	22.92	24.14	20.83	23.68	21.21	18.57	12.30	-6.27	0.437472	1.000000
K	cassette	PCBP2,RP11-793H13.8	chr12	+	chr12:53856352-53859715;chr12:53856352-53861004	chr12:53856352-53858543;chr12:53858637-53859715,chr12:53858637-53861004		chr12:53858544-53858636			50.28	43.65	49.61	58.46	50.00	55.56	53.85	50.99	54.42	58.54	61.46	60.28	55.62	55.19	56.03	60.71	57.18	65.16	42.17	43.66	51.18	54.44	55.39	57.14	58.93	48.99	54.02	58.00	57.53	53.07	50.81	46.92	46.02	54.65	56.47	54.09	49.94	50.55	0.61	0.987259	0.997001
K	alternative_donor	RPSA	chr3	+	chr3:39448256-39449111;chr3:39448326-39449111	chr3:39448574-39449111		chr3:39448256-39448325;chr3:39448326-39448573	chr3:39448255-39448256;chr3:39448325-39448326		3.23	0.00	1.14	0.00	0.59	0.00	0.24	2.70	0.00	0.00	0.00	0.48	0.18	0.00	0.00	0.20	0.19	0.00	0.00	4.35	0.00	0.68	0.41	0.67	0.00	0.00	1.45	0.00	0.00	0.00	6.25	5.00	0.00	0.00	0.54	0.00	0.00	2.96	2.96	0.043913	0.375646
K	alternative_acceptor	QKI	chr6	+	chr6:163987828-163991725	chr6:163987828-163990469		chr6:163990470-163991725	chr6:163991725-163991726		54.05	97.35	45.33	100.00	94.74	100.00	48.67	28.57	38.60	30.36	40.00	26.96	44.06	28.95	41.67	39.68	36.52	27.88	98.11	45.07	91.89	79.31	78.81	57.14	100.00	59.52	67.95	86.49	87.65	89.09	60.71	56.52	97.47	70.49	70.59	57.58	97.41	49.56	-47.85	0.024376	0.546324
K	coord_cassette	KLC1	chr14	+	chr14:104145883-104166991	chr14:104145883-104153417;chr14:104153549-104158695;chr14:104158763-104166991		chr14:104153418-104153548;chr14:104158696-104158762			61.54	47.37	58.82	43.75	38.10	36.36	30.00	70.59	26.67	45.00	40.00	46.67	35.71	66.67	28.12	40.00	25.71	46.15	40.91	NA	22.50	NA	44.44	NA	11.54	64.71	38.10	40.00	32.14	50.00	72.73	53.33	31.03	66.67	NA	62.50	33.37	66.67	33.30	0.000487	0.111091
N	cassette	RNASET2,RP11-514O12.4	chr6	-	chr6:167352497-167369584	chr6:167352497-167356506;chr6:167356578-167369584		chr6:167356507-167356577			94.25	96.99	93.18	99.07	98.65	97.47	100.00	100.00	100.00	97.85	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	98.01	93.88	94.74	98.15	98.57	98.62	97.64	94.19	95.35	98.68	100.00	100.00	100.00	95.74	97.09	100.00	98.32	100.00	97.83	97.12	-0.70	0.418487	0.728056
K	intron_retention		chr10	-	chr10:103868081-103868785				chr10:103868080-103868081;chr10:103868785-103868786		51.85	51.11	58.00	NA	45.45	NA	8.33	NA	18.18	20.00	12.90	NA	19.35	18.18	36.84	NA	12.50	NA	40.00	68.75	45.00	NA	44.44	NA	62.50	61.54	68.75	NA	41.18	NA	66.67	51.35	36.84	45.45	59.09	50.00	38.42	61.54	23.12	0.433412	1.000000
K	intron_retention	FTH1	chr11	-	chr11:61732578-61732840				chr11:61732577-61732578;chr11:61732840-61732841		47.88	47.69	50.82	54.76	50.82	48.92	46.83	48.16	46.05	47.92	50.44	49.70	46.41	45.34	47.43	43.67	45.58	52.50	10.81	20.52	15.40	41.77	40.57	44.80	48.32	48.74	49.38	48.84	46.26	50.93	22.07	24.48	15.27	64.91	58.72	61.51	46.62	46.61	-0.01	0.922126	1.000000
N	coord_cassette	CD300A	chr17	+	chr17:72473670-72480139	chr17:72473670-72477427;chr17:72477466-72477864;chr17:72477973-72480139		chr17:72477428-72477465;chr17:72477865-72477972			96.34	95.28	100.00	NA	89.29	NA	96.30	100.00	97.14	100.00	95.35	100.00	97.73	100.00	100.00	100.00	97.33	100.00	93.33	100.00	100.00	NA	93.33	NA	100.00	100.00	94.55	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	97.02	100.00	2.98	0.104754	0.643829
N	alternative_acceptor	PPP6R2,TTC38	chr22	+	chr22:50862044-50869601	chr22:50862044-50868373		chr22:50868374-50869601	chr22:50869601-50869602		2.70	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.26	NA	0.00	0.00	0.00	0.00	0.00	4.00	2.38	0.00	4.17	4.35	4.35	0.00	0.00	0.00	0.184589	0.660713
K	alternative_acceptor	ANTXR1,HTRA2	chr2	+	chr2:74758499-74758723	chr2:74758499-74758693		chr2:74758694-74758723	chr2:74758723-74758724		4.76	15.62	15.79	0.00	13.04	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	7.14	NA	0.00	0.00	3.45	10.00	8.00	9.09	10.00	7.69	4.35	0.00	5.00	9.09	9.09	4.55	6.25	6.25	4.76	NA	3.12	6.22	3.10	0.983025	0.994790
N	jcn_only_AA	FES	chr15	+	chr15:91433509-91433595;chr15:91433509-91433630	chr15:91433509-91433636		chr15:91433596-91433630;chr15:91433631-91433636	chr15:91433630-91433631;chr15:91433636-91433637		4.17	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.94	NA	NA	NA	0.00	0.00	6.06	0.00	0.00	NA	5.88	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	2.13	NA	0.00	0.00	1.06	0.00	-1.06	0.449971	0.714056
N	cassette	UBE2Q1	chr1	-	chr1:154524456-154524879;chr1:154524296-154524879	chr1:154524456-154524568,chr1:154524296-154524568;chr1:154524660-154524879		chr1:154524569-154524659			97.59	88.10	91.74	100.00	91.49	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	98.00	100.00	93.75	100.00	NA	100.00	99.07	100.00	96.72	100.00	96.10	95.04	90.32	98.65	97.40	100.00	90.32	100.00	9.68	0.111404	0.708559
N	cassette	ITGB1BP1	chr2	-	chr2:9558862-9562607;chr2:9558862-9562930;chr2:9558862-9563501;chr2:9554386-9563501;chr2:9558862-9563094	chr2:9554386-9560118,chr2:9558862-9560118;chr2:9560230-9562607,chr2:9560230-9562930,chr2:9560230-9563501,chr2:9560230-9563094		chr2:9560119-9560229			0.00	8.00	9.52	0.00	5.26	NA	12.87	8.00	5.00	7.32	6.82	10.13	10.71	3.70	12.00	7.59	8.64	7.14	NA	5.56	9.09	8.00	10.87	8.33	NA	NA	9.09	8.33	4.35	7.14	0.00	0.00	7.69	15.38	12.50	11.11	9.36	3.70	-5.66	0.015181	0.369835
N	alternative_donor	CIZ1	chr9	-	chr9:130929444-130931072;chr9:130929444-130929817;chr9:130929444-130931330	chr9:130929444-130931354		chr9:130929818-130931072;chr9:130931073-130931330;chr9:130931331-130931354	chr9:130931072-130931073;chr9:130931330-130931331;chr9:130931354-130931355		18.52	23.33	8.33	27.78	22.45	16.67	23.08	10.00	14.29	27.78	12.90	9.09	10.81	NA	15.38	10.34	14.29	12.50	25.00	26.09	23.68	15.38	13.33	18.75	18.18	11.76	15.00	11.11	19.67	8.00	0.00	23.26	26.19	19.35	16.67	17.86	23.20	11.76	-11.44	0.163485	0.563271
K	jcn_only_AA	CTDSP2	chr12	-	chr12:58217789-58218009	chr12:58217873-58218009		chr12:58217789-58217872	chr12:58217788-58217789		87.88	79.17	93.66	NA	NA	NA	96.39	95.29	94.04	97.26	90.38	90.00	93.15	94.50	96.99	94.23	96.88	91.95	NA	100.00	100.00	NA	93.75	90.48	100.00	94.00	95.51	100.00	100.00	100.00	100.00	93.44	NA	100.00	90.91	90.32	94.77	94.90	0.12	0.562287	0.792395
N	jcn_only_AA	LY6E	chr8	+	chr8:144102409-144102765;chr8:144102409-144102734;chr8:144102409-144102711	chr8:144102409-144102730		chr8:144102712-144102730;chr8:144102731-144102734;chr8:144102735-144102765	chr8:144102730-144102731;chr8:144102734-144102735;chr8:144102765-144102766		97.75	100.00	98.83	97.78	100.00	94.92	97.56	98.64	98.08	97.60	97.81	96.61	100.00	98.54	98.28	96.31	97.84	97.83	100.00	95.80	95.50	90.91	100.00	95.97	100.00	98.45	99.24	97.62	94.12	96.11	96.44	97.01	94.29	97.14	100.00	98.23	100.00	98.10	-1.90	0.365030	0.663989
K	alternative_donor	TPT1	chr13	-	chr13:45914320-45915176;chr13:45914320-45914486	chr13:45914320-45914846		chr13:45914487-45914846;chr13:45914847-45915176	chr13:45914846-45914847;chr13:45915176-45915177		92.28	94.11	92.84	91.05	95.34	92.81	98.01	97.88	98.40	97.35	97.71	98.27	98.65	98.00	98.65	97.68	97.66	97.96	96.00	94.67	96.23	94.19	95.73	94.36	93.68	94.41	94.56	96.28	97.02	96.78	95.67	94.91	93.29	94.49	96.21	95.44	95.06	95.17	0.11	0.917363	0.981916
N	alternative_acceptor	RAB7A	chr3	+	chr3:128526515-128542560;chr3:128526515-128531561;chr3:128526515-128526788;chr3:128526515-128532169	chr3:128526515-128583716		chr3:128526789-128531561;chr3:128531562-128532169;chr3:128532170-128542560;chr3:128542561-128583716	chr3:128531561-128531562;chr3:128532169-128532170;chr3:128542560-128542561;chr3:128583716-128583717		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
K	cassette	RHOT2	chr16	+	chr16:720558-720891	chr16:720558-720674;chr16:720774-720891		chr16:720675-720773			88.00	62.50	85.00	NA	100.00	NA	95.24	100.00	100.00	100.00	100.00	100.00	96.30	100.00	96.15	100.00	100.00	100.00	80.00	95.00	NA	91.67	92.86	100.00	100.00	100.00	86.21	100.00	100.00	NA	87.50	83.33	NA	100.00	89.47	91.30	95.24	97.50	2.26	0.313867	0.709176
K	jcn_only_AA	ARV1,NIT1	chr1	+	chr1:161089403-161089614	chr1:161089403-161089608		chr1:161089609-161089614	chr1:161089614-161089615		100.00	85.19	100.00	NA	95.00	NA	100.00	100.00	96.30	100.00	100.00	100.00	93.55	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	96.67	96.78	100.00	3.22	0.217745	0.663989
K	cassette	USMG5	chr10	-	chr10:105152224-105156165;chr10:105152224-105155502	chr10:105152224-105153955;chr10:105154152-105156165,chr10:105154152-105155502		chr10:105153956-105154151			3.88	3.88	4.24	7.19	5.61	5.88	8.70	17.19	18.68	8.29	6.16	6.38	0.00	1.45	2.06	0.85	0.42	0.00	8.91	13.48	6.03	9.62	8.44	11.20	1.52	8.05	7.02	5.88	3.23	4.86	6.40	5.56	2.83	11.11	6.98	13.11	3.35	7.23	3.87	0.187428	0.709176
K	intron_retention	RP1-20B21.4	chr1	+	chr1:17733501-17733812				chr1:17733500-17733501;chr1:17733812-17733813		94.87	94.16	100.00	95.89	96.25	96.23	96.70	100.00	100.00	94.93	96.55	95.59	96.49	100.00	96.00	100.00	95.39	100.00	97.45	100.00	100.00	100.00	100.00	100.00	90.37	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	94.37	98.26	100.00	96.59	100.00	3.41	0.191053	1.000000
K	intron_retention	HCFC1R1	chr16	-	chr16:3073363-3073474				chr16:3073362-3073363;chr16:3073474-3073475		9.68	9.89	21.74	8.00	11.94	15.00	3.28	0.00	0.00	3.17	2.80	4.65	2.70	9.09	0.00	3.85	4.67	2.70	13.64	18.18	9.57	35.29	13.73	NA	10.71	NA	12.50	9.68	8.89	8.33	20.00	20.41	14.63	11.11	17.86	10.34	10.30	9.68	-0.62	0.962351	1.000000
K	cassette	CDC16	chr13	+	chr13:115016150-115024809	chr13:115016150-115022552;chr13:115022706-115024809		chr13:115022553-115022705			100.00	100.00	100.00	NA	100.00	NA	93.75	100.00	100.00	93.33	95.45	NA	100.00	94.44	100.00	96.30	83.33	NA	100.00	94.44	100.00	100.00	95.83	92.31	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	93.10	94.44	100.00	100.00	100.00	0.00	0.612668	0.855635
K	jcn_only_AA	ACIN1	chr14	-	chr14:23533695-23535174	chr14:23533698-23535174		chr14:23533695-23533697	chr14:23533694-23533695		78.18	89.29	77.63	NA	83.78	NA	82.50	86.79	86.00	82.00	76.71	76.19	81.25	80.00	84.21	77.55	75.00	84.62	68.75	81.25	84.62	86.11	77.36	82.76	82.76	78.95	78.57	82.50	81.48	80.00	77.36	81.94	80.00	83.19	73.83	75.86	81.88	79.47	-2.40	0.915597	0.970942
N	cassette	CCNL1	chr3	-	chr3:156866379-156867273	chr3:156866379-156867075;chr3:156867175-156867273		chr3:156867076-156867174			98.04	100.00	100.00	92.16	89.74	94.55	100.00	96.55	100.00	78.57	82.61	76.92	100.00	100.00	100.00	83.33	85.71	81.82	100.00	100.00	97.44	93.10	90.91	94.52	100.00	96.15	96.30	92.21	91.84	91.80	100.00	99.34	100.00	92.67	96.34	91.93	100.00	99.02	-0.98	0.090285	0.656056
N	alternative_donor	AP2A2	chr11	+	chr11:1008136-1009099	chr11:1008992-1009099		chr11:1008136-1008991	chr11:1008135-1008136		3.17	5.33	10.26	4.55	2.19	0.00	0.62	0.00	0.00	0.00	0.76	0.00	0.96	0.00	2.63	0.00	0.69	0.00	1.55	5.36	4.17	2.86	2.40	3.33	2.76	2.50	3.92	0.00	1.56	0.00	2.00	9.09	2.26	4.76	4.03	5.66	1.90	2.25	0.35	0.946273	0.984606
K	intron_retention		chr2	-	chr2:74754187-74754374				chr2:74754186-74754187;chr2:74754374-74754375		4.74	6.64	6.01	5.10	8.51	5.90	1.56	0.97	1.18	0.96	1.29	0.51	2.87	1.77	3.26	1.00	0.96	1.74	8.59	8.55	6.32	7.78	8.48	7.48	11.33	5.26	6.55	4.49	4.85	4.76	7.83	6.25	9.09	4.24	7.33	6.19	7.62	5.00	-2.62	0.828643	1.000000
K	jcn_only_AD	ANXA4	chr2	+	chr2:70033565-70035037	chr2:70033631-70035037		chr2:70033565-70033630	chr2:70033564-70033565		96.34	96.77	97.33	100.00	96.55	NA	92.27	94.90	94.83	93.81	92.47	89.86	95.13	94.54	98.45	92.83	93.87	91.70	94.59	91.22	100.00	91.75	94.01	93.22	78.57	94.66	98.25	89.71	93.24	96.97	93.94	89.58	85.19	88.96	93.48	93.82	93.43	94.60	1.17	0.246976	0.657607
K	intron_retention	DENND4B	chr1	-	chr1:153912281-153912631				chr1:153912280-153912281;chr1:153912631-153912632		12.50	27.27	13.04	NA	NA	NA	2.38	0.00	7.69	0.00	1.43	NA	10.45	2.17	8.33	3.23	4.17	0.00	NA	4.55	NA	10.00	9.09	0.00	15.79	4.76	17.95	0.00	23.08	NA	NA	4.17	NA	20.83	17.07	9.68	13.12	4.55	-8.57	0.835756	1.000000
N	alternative_acceptor	FGD2	chr6	+	chr6:36988516-36989287	chr6:36988516-36989163		chr6:36989164-36989287	chr6:36989287-36989288		0.67	0.00	NA	NA	NA	NA	0.00	0.41	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	0.00	0.00	1.72	NA	0.00	0.00	0.00	0.00	0.53	NA	0.00	6.25	0.00	1.47	0.00	0.00	0.00	0.00	0.85	0.00	0.60	0.60	0.015212	0.499617
K	intron_retention	AP3D1	chr19	-	chr19:2111332-2111677				chr19:2111331-2111332;chr19:2111677-2111678		3.39	7.84	5.45	0.00	4.00	NA	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	6.12	2.22	7.02	0.00	0.00	3.51	0.00	1.92	3.33	5.56	4.00	0.00	5.17	7.81	3.41	0.00	0.00	0.00	0.930939	1.000000
N	coord_cassette	NCOR2	chr12	-	chr12:124810917-124816864	chr12:124810917-124812092;chr12:124812180-124815390;chr12:124815445-124816864		chr12:124812093-124812179;chr12:124815391-124815444			100.00	88.57	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
K	intron_retention	CCT8	chr21	-	chr21:30434737-30434810				chr21:30434736-30434737;chr21:30434810-30434811		3.81	5.80	5.93	4.35	1.43	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.42	1.16	2.56	2.29	3.45	0.00	0.00	2.02	2.15	1.05	1.49	7.69	5.31	3.03	0.85	2.82	2.44	0.00	1.21	1.21	0.621811	1.000000
K	intron_retention	ITGB1BP1	chr2	-	chr2:9547035-9547577				chr2:9547034-9547035;chr2:9547577-9547578		6.78	3.70	0.00	1.64	2.40	0.00	3.73	2.38	0.00	3.26	2.31	1.64	4.00	0.00	0.00	4.35	1.41	0.00	2.80	2.27	1.50	5.26	5.88	3.64	0.00	4.55	0.00	4.05	5.10	2.82	0.00	2.86	2.00	3.49	4.08	4.65	3.25	2.33	-0.92	0.613576	1.000000
K	intron_retention		chr10	-	chr10:12212770-12212898				chr10:12212769-12212770;chr10:12212898-12212899		0.00	2.29	6.98	0.00	1.97	0.00	0.00	0.00	0.00	0.00	2.17	0.00	1.64	NA	0.00	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	1.06	0.00	0.00	5.00	1.11	5.88	0.00	3.57	0.96	0.00	-0.96	0.414776	1.000000
K	alternative_acceptor	VAV1	chr19	+	chr19:6828912-6829883	chr19:6828912-6829796		chr19:6829797-6829883	chr19:6829883-6829884		94.02	92.31	95.27	96.15	92.00	NA	93.10	100.00	91.80	94.87	100.00	94.37	91.43	92.21	90.00	92.56	92.86	92.59	100.00	88.78	89.13	89.80	90.48	93.22	100.00	90.35	96.20	100.00	95.12	90.82	82.76	90.11	80.95	100.00	93.62	94.48	92.70	91.28	-1.42	0.672578	0.880186
K	coord_cassette	UPP1	chr7	+	chr7:48134425-48146469	chr7:48134425-48139266;chr7:48139385-48141420;chr7:48141468-48146469		chr7:48139267-48139384;chr7:48141421-48141467			34.20	23.53	30.32	35.21	25.00	29.19	41.67	47.54	52.17	68.35	50.00	68.22	26.67	56.25	46.34	55.21	42.55	63.41	10.81	36.50	30.67	47.17	44.44	61.34	5.88	40.48	34.48	51.67	55.38	61.76	21.05	19.72	13.89	33.33	32.26	45.30	18.71	38.49	19.78	0.025880	0.643829
N	alternative_donor	TCIRG1	chr11	+	chr11:67816905-67817129;chr11:67816762-67817129;chr11:67816899-67817129;chr11:67816758-67817129	chr11:67816922-67817129		chr11:67816758-67816761;chr11:67816762-67816898;chr11:67816899-67816904;chr11:67816905-67816921	chr11:67816757-67816758;chr11:67816761-67816762;chr11:67816898-67816899;chr11:67816904-67816905		7.36	7.35	7.58	9.20	9.06	7.53	3.31	2.68	3.64	2.27	5.11	1.22	4.67	4.27	6.49	5.56	4.42	0.00	6.05	7.34	6.58	10.11	8.47	7.02	7.18	7.44	8.76	8.53	9.52	7.61	5.56	6.67	4.78	8.55	8.77	7.02	5.42	6.45	1.03	0.837412	0.953571
N	alternative_acceptor	U2AF1,U2AF1L5	chr21	-	chr21:44513360-44514580	chr21:44514004-44514580		chr21:44513360-44514003	chr21:44513359-44513360		14.55	8.02	14.08	6.10	4.21	3.43	0.00	2.22	2.50	2.90	1.64	2.56	1.30	2.33	4.41	1.26	2.82	2.50	3.91	15.87	6.11	6.61	7.01	8.85	5.03	7.27	7.41	2.88	6.11	5.97	20.22	17.43	8.93	15.05	7.21	10.91	4.47	10.91	6.44	0.127599	0.618995
K	intron_retention	TCEAL8	chrX	-	chrX:102508719-102508817				chrX:102508718-102508719;chrX:102508817-102508818		100.00	100.00	100.00	NA	100.00	NA	95.06	100.00	96.77	100.00	96.59	100.00	100.00	100.00	92.68	96.00	97.47	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.74	95.92	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.998164	1.000000
K	intron_retention	APPL1	chr3	+	chr3:57302516-57303568				chr3:57302515-57302516;chr3:57303568-57303569		8.33	16.67	5.56	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	NA	6.67	10.00	0.00	0.00	0.00	NA	0.00	10.00	0.00	6.25	5.26	NA	NA	0.00	17.65	0.00	3.12	0.00	0.00	0.00	0.714323	1.000000
K	intron_retention	ABCC3	chr17	+	chr17:48741473-48742513				chr17:48741472-48741473;chr17:48742513-48742514		8.11	9.41	17.05	15.38	8.51	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.25	0.00	13.33	0.00	7.69	NA	6.76	4.55	8.82	0.00	16.36	4.55	11.63	18.18	12.20	0.00	8.57	0.00	21.05	7.14	2.56	10.00	24.32	3.03	6.50	6.33	-0.17	0.915337	1.000000
K	cassette	SPTAN1	chr9	+	chr9:131371564-131373992	chr9:131371564-131371929;chr9:131371945-131373992		chr9:131371930-131371944			10.00	0.00	16.32	NA	NA	NA	14.06	3.74	2.48	5.00	8.70	4.55	13.25	0.00	4.92	19.51	8.77	11.11	NA	6.25	12.00	20.00	8.11	16.67	55.00	6.67	15.34	15.79	9.09	0.00	15.62	13.51	NA	15.09	20.45	19.12	13.66	6.46	-7.20	0.340831	0.709176
N	jcn_only_AD	CYTH2	chr19	+	chr19:48978207-48981325	chr19:48980977-48981325		chr19:48978207-48980976	chr19:48978206-48978207		21.74	36.59	20.83	10.00	16.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	12.50	5.88	14.81	12.50	12.90	10.00	NA	4.65	8.89	0.00	0.00	0.00	18.92	21.05	32.14	16.00	8.00	3.03	12.50	5.27	-7.23	0.408916	0.672347
K	intron_retention		chr17	-	chr17:61898299-61898389				chr17:61898298-61898299;chr17:61898389-61898390		11.76	5.13	2.94	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	4.00	5.00	3.03	3.70	2.38	4.76	0.00	0.00	0.00	0.00	0.00	0.00	8.33	9.84	3.45	4.00	2.86	5.88	1.73	2.50	0.77	0.627314	1.000000
N	cassette	GINM1	chr6	+	chr6:149901860-149911862	chr6:149901860-149903575;chr6:149903740-149911862		chr6:149903576-149903739			90.38	100.00	96.02	100.00	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.96	95.10	90.00	95.65	95.35	100.00	100.00	96.53	-3.47	0.377683	0.709410
K	jcn_only_AA	ADAM15,MAPKAPK2	chr1	+	chr1:206905071-206905183	chr1:206905071-206905150		chr1:206905151-206905183	chr1:206905183-206905184		2.92	NA	3.00	2.78	9.62	5.41	1.19	1.88	2.41	2.70	2.63	2.35	2.00	1.57	3.02	1.64	0.00	1.48	0.00	2.48	3.77	3.59	3.73	4.39	NA	3.42	3.51	3.77	3.92	2.69	4.84	3.78	0.00	2.86	6.03	2.70	0.59	2.70	2.11	0.018877	0.537091
N	alternative_acceptor	KIAA0368	chr9	-	chr9:114133046-114133900	chr9:114133378-114133900		chr9:114133046-114133377	chr9:114133045-114133046		2.44	0.00	2.86	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	0.00	3.70	1.35	3.85	0.00	2.00	2.17	0.00	0.00	0.00	3.45	6.67	0.00	4.41	1.67	4.39	0.00	2.22	2.22	0.044720	0.570243
N	alternative_acceptor	PFDN2	chr1	-	chr1:161070644-161071837	chr1:161070650-161071837		chr1:161070644-161070649	chr1:161070643-161070644		100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.59	100.00	98.80	93.62	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	97.01	100.00	100.00	100.00	100.00	100.00	0.00	0.630247	0.857855
N	alternative_acceptor	SIRT6	chr19	-	chr19:4175211-4175676;chr19:4175149-4175676	chr19:4175109-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		10.00	11.76	22.73	18.18	13.64	18.18	20.00	15.38	23.53	20.00	13.33	NA	25.00	20.00	12.50	0.00	13.04	NA	18.75	17.65	11.54	9.09	13.33	NA	9.52	13.33	13.64	12.50	19.05	27.78	20.00	10.00	20.00	20.00	15.00	18.75	19.38	16.52	-2.86	0.625578	0.855896
K	jcn_only_AA	DGKZ	chr11	+	chr11:46389298-46389554	chr11:46389298-46389551		chr11:46389552-46389554	chr11:46389554-46389555		62.50	57.89	70.91	NA	NA	NA	66.67	69.70	67.74	66.67	75.47	NA	57.75	77.42	65.38	69.23	81.48	NA	NA	52.38	NA	53.85	66.67	68.75	72.00	66.67	78.57	NA	60.00	NA	64.29	67.65	73.33	66.67	62.96	56.00	66.67	65.48	-1.19	0.994342	0.997956
K	cassette	PPP1R35	chr7	-	chr7:100033157-100033470	chr7:100033157-100033253;chr7:100033391-100033470		chr7:100033254-100033390			100.00	100.00	100.00	90.91	80.95	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	83.33	NA	92.31	NA	91.30	100.00	92.00	NA	84.62	NA	100.00	100.00	92.86	NA	87.50	NA	100.00	89.47	95.24	NA	NA	100.00	100.00	100.00	0.00	0.201338	0.709176
N	alternative_acceptor	CPNE1	chr20	-	chr20:34219120-34219189;chr20:34219092-34219189;chr20:34219086-34219189	chr20:34219096-34219189		chr20:34219086-34219091;chr20:34219092-34219095;chr20:34219096-34219119	chr20:34219085-34219086;chr20:34219091-34219092;chr20:34219095-34219096		96.30	100.00	95.12	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	NA	NA	NA	92.86	100.00	NA	93.75	100.00	NA	100.00	96.43	NA	100.00	100.00	87.50	96.00	100.00	100.00	100.00	100.00	100.00	94.58	-5.42	0.115615	0.605363
N	cassette	MAD1L1	chr7	-	chr7:2020177-2054136	chr7:2020177-2041699;chr7:2041757-2054136		chr7:2041700-2041756			100.00	97.87	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	96.67	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MAP3K12	chr12	-	chr12:53876154-53876348				chr12:53876153-53876154;chr12:53876348-53876349		29.03	32.00	38.64	NA	10.00	NA	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	33.33	26.67	16.67	NA	22.22	NA	21.74	31.25	41.03	NA	26.67	NA	25.00	41.38	30.43	NA	40.00	30.00	31.21	27.85	-3.36	0.701386	1.000000
N	jcn_only_AA	MYL5	chr4	+	chr4:669999-672446;chr4:669999-671710	chr4:669999-672454					0.00	0.00	0.00	17.65	18.18	20.69	NA	NA	0.00	NA	NA	NA	NA	NA	14.29	NA	NA	NA	10.34	0.00	11.43	NA	NA	0.00	0.00	0.00	9.09	NA	0.00	16.67	17.65	11.11	0.00	20.00	25.00	14.29	0.00	0.00	0.00	0.735870	0.881677
N	alternative_acceptor	SNX6	chr14	-	chr14:35036969-35037059;chr14:35036961-35037059	chr14:35036978-35037059		chr14:35036961-35036968;chr14:35036969-35036977	chr14:35036960-35036961;chr14:35036968-35036969		98.35	100.00	100.00	100.00	100.00	100.00	99.02	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	100.00	100.00	100.00	98.72	97.26	100.00	99.11	100.00	100.00	100.00	100.00	100.00	100.00	93.33	98.94	97.80	99.11	100.00	100.00	0.00	0.480155	0.779404
K	intron_retention		chr16	+	chr16:71957284-71958671				chr16:71957283-71957284;chr16:71958671-71958672		6.52	0.00	9.87	5.56	0.00	NA	2.02	1.69	1.32	0.81	0.00	1.24	2.17	1.05	2.82	0.77	2.02	0.82	NA	5.48	0.00	4.17	3.26	5.50	NA	6.45	5.83	1.89	1.37	1.39	6.12	7.63	0.00	4.67	6.93	4.84	1.01	5.80	4.79	0.082544	1.000000
N	intron_retention	ATXN2L	chr16	+	chr16:28847807-28848071				chr16:28847806-28847807;chr16:28848071-28848072		96.55	100.00	97.56	96.88	100.00	100.00	88.89	100.00	100.00	83.87	89.66	70.00	96.88	95.00	95.35	88.24	88.89	NA	100.00	91.43	100.00	100.00	100.00	92.00	100.00	100.00	100.00	96.97	95.74	100.00	92.31	96.70	100.00	100.00	100.00	96.83	100.00	95.78	-4.22	0.725201	1.000000
K	intron_retention		chr22	-	chr22:21067086-21067568				chr22:21067085-21067086;chr22:21067568-21067569		29.41	7.69	17.65	NA	5.88	NA	1.85	0.00	NA	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	6.67	10.00	0.00	12.12	14.29	NA	10.00	12.50	6.25	4.00	0.00	18.18	5.88	8.33	8.00	18.18	0.00	4.77	10.00	5.23	0.415736	1.000000
K	jcn_only_AA	TYK2	chr19	-	chr19:10490366-10491055	chr19:10490456-10491055		chr19:10490366-10490455	chr19:10490365-10490366		90.62	100.00	100.00	NA	NA	NA	97.14	95.83	93.48	100.00	94.29	92.31	94.23	96.67	96.67	90.00	79.17	NA	NA	95.00	NA	NA	100.00	100.00	100.00	100.00	88.89	NA	100.00	NA	NA	91.18	NA	92.86	91.18	89.47	98.57	95.83	-2.74	0.314468	0.663989
N	alternative_acceptor	C17orf62	chr17	-	chr17:80405498-80407045;chr17:80405523-80407045	chr17:80405515-80407045		chr17:80405498-80405514;chr17:80405515-80405522	chr17:80405497-80405498;chr17:80405514-80405515		1.52	1.64	2.94	NA	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.89	0.63	0.44	0.00	0.00	2.86	0.00	2.74	2.38	NA	2.56	7.14	0.00	1.14	1.49	4.00	4.00	5.00	0.00	1.32	6.25	0.00	2.78	1.52	0.45	0.89	0.44	0.685099	0.881289
K	intron_retention	MRPL17	chr11	-	chr11:6704047-6704353				chr11:6704046-6704047;chr11:6704353-6704354		0.00	0.00	3.03	0.00	1.61	0.00	0.00	1.28	2.80	0.00	0.00	0.00	0.88	0.00	0.88	0.00	0.00	0.00	0.00	0.00	2.00	0.00	2.78	0.00	0.00	0.00	4.17	0.00	2.27	2.74	0.00	11.76	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.876212	1.000000
K	intron_retention	DEF8	chr16	+	chr16:90021675-90023918				chr16:90021674-90021675;chr16:90023918-90023919		7.46	12.70	10.29	0.00	5.32	0.00	17.78	8.00	0.00	4.76	6.35	3.70	29.76	2.50	0.00	1.82	9.80	0.00	15.09	5.00	3.45	2.50	7.04	3.12	15.56	8.70	7.27	0.00	8.89	0.00	7.14	9.43	11.96	4.84	4.05	2.99	15.32	7.30	-8.02	0.371284	1.000000
K	intron_retention	ZFAS1	chr20	+	chr20:47897108-47905581				chr20:47897107-47897108;chr20:47905581-47905582		16.67	10.57	9.62	17.39	6.80	20.36	0.00	0.00	1.67	2.74	0.00	1.67	2.78	5.88	3.77	5.56	2.08	3.33	11.00	18.37	9.92	14.89	11.67	26.92	5.50	13.33	9.62	25.58	8.62	18.57	14.56	13.33	13.08	28.00	17.39	30.67	8.04	13.95	5.91	0.545960	1.000000
K	cassette	PHYKPL	chr5	-	chr5:177638972-177641796	chr5:177638972-177639973;chr5:177640105-177641796		chr5:177639974-177640104			80.77	71.43	69.57	83.33	79.31	81.82	90.91	92.00	93.55	92.86	82.61	100.00	93.33	91.89	90.00	83.33	90.48	100.00	74.07	87.50	77.14	90.00	84.00	88.24	79.49	83.33	73.53	70.59	80.00	95.24	85.71	85.37	79.17	80.95	90.48	93.10	79.33	86.60	7.27	0.218963	0.709176
N	alternative_acceptor	PLA2G4C	chr19	-	chr19:48565410-48571047;chr19:48568294-48571047	chr19:48565452-48571047		chr19:48565410-48565451;chr19:48565452-48568293	chr19:48565409-48565410;chr19:48565451-48565452		0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	5.26	3.33	11.11	0.00	3.39	0.00	0.00	0.00	4.76	2.44	2.33	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.181701	0.660713
N	jcn_only_AA		chr6	+	chr6:36993715-36995208;chr6:36993715-36993866	chr6:36993715-36995204		chr6:36993867-36995204;chr6:36995205-36995208	chr6:36995204-36995205;chr6:36995208-36995209		87.85	100.00	NA	NA	NA	NA	100.00	92.75	94.44	NA	100.00	84.62	100.00	90.64	92.86	100.00	100.00	85.19	100.00	83.72	NA	NA	100.00	81.82	NA	85.50	NA	80.77	100.00	81.25	87.04	86.67	100.00	88.24	100.00	82.00	100.00	87.44	-12.56	0.000294	0.109288
N	alternative_donor	STAT3	chr17	-	chr17:40469243-40471873;chr17:40469243-40474302	chr17:40469243-40474299		chr17:40471874-40474299;chr17:40474300-40474302	chr17:40474299-40474300;chr17:40474302-40474303		55.65	60.87	57.87	62.50	61.90	67.80	71.11	65.94	66.50	63.54	73.68	67.54	66.67	72.65	65.46	65.85	69.01	66.32	66.67	58.00	71.21	56.10	60.00	59.40	57.14	59.22	62.71	75.00	69.70	70.63	64.65	60.94	73.33	55.10	61.70	56.51	66.67	61.94	-4.73	0.380107	0.657675
N	alternative_acceptor	MGAT4B	chr5	-	chr5:179225426-179225512;chr5:179225435-179225512	chr5:179225454-179225512		chr5:179225426-179225434;chr5:179225435-179225453	chr5:179225425-179225426;chr5:179225434-179225435		4.44	1.64	5.88	0.00	1.61	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	1.89	0.00	2.17	3.57	2.70	3.70	1.39	0.00	4.88	4.55	0.00	3.85	1.79	0.00	5.88	6.67	5.26	3.03	2.17	0.00	2.08	4.50	2.41	0.326602	0.709013
K	cassette	GYPC	chr2	+	chr2:127413889-127451439	chr2:127413889-127447830;chr2:127447888-127451439		chr2:127447831-127447887			100.00	92.45	93.28	97.22	94.44	93.75	93.21	96.83	93.03	89.81	92.39	89.93	92.49	95.16	94.83	93.28	89.86	90.74	94.92	100.00	90.91	97.22	93.38	98.46	91.94	100.00	91.96	90.00	95.35	93.15	100.00	95.37	93.22	93.85	92.68	96.67	92.85	100.00	7.15	0.000579	0.079787
K	jcn_only_AA	FIBP	chr11	-	chr11:65652608-65653000	chr11:65652658-65653000		chr11:65652608-65652657	chr11:65652607-65652608		93.44	100.00	100.00	95.00	98.53	97.83	100.00	100.00	95.92	100.00	100.00	100.00	100.00	97.87	100.00	100.00	98.70	97.78	100.00	98.39	98.67	100.00	98.57	100.00	97.10	96.23	95.00	100.00	100.00	96.77	94.44	97.10	97.76	100.00	98.15	100.00	100.00	97.05	-2.95	0.071566	0.663989
K	intron_retention		chr11	+	chr11:65412601-65413324				chr11:65412600-65412601;chr11:65413324-65413325		2.15	0.00	1.64	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	1.85	0.00	0.00	2.63	0.00	0.00	0.00	0.97	0.00	0.00	0.00	0.00	3.85	0.00	3.70	0.00	5.36	0.00	0.00	0.00	0.800309	1.000000
K	jcn_only_AA	KCTD13	chr16	-	chr16:29917888-29922298	chr16:29918430-29922298		chr16:29917888-29918429	chr16:29917887-29917888		90.00	72.73	94.12	76.92	76.47	NA	100.00	100.00	85.71	100.00	76.92	NA	100.00	100.00	92.59	100.00	93.33	NA	75.00	94.12	78.26	88.89	90.62	NA	NA	100.00	90.32	87.50	93.33	NA	88.24	96.97	NA	100.00	100.00	100.00	87.50	97.06	9.56	0.350684	0.663989
K	alternative_acceptor	CDV3	chr3	+	chr3:133305567-133306002;chr3:133305567-133306739;chr3:133305567-133307196	chr3:133305567-133306005		chr3:133306003-133306005;chr3:133306006-133306739;chr3:133306740-133307196	chr3:133306005-133306006;chr3:133306739-133306740;chr3:133307196-133307197		12.90	20.00	14.40	23.08	16.67	18.92	9.14	8.63	5.08	7.81	8.77	3.89	5.03	9.30	7.62	5.82	7.14	4.72	NA	10.94	16.67	7.77	8.41	5.62	10.00	8.45	10.00	11.54	7.46	12.24	15.38	12.50	23.08	7.89	9.56	10.78	10.00	10.12	0.12	0.518890	0.804582
K	cassette	TMEM176A	chr7	+	chr7:150500921-150501914	chr7:150500921-150501449;chr7:150501561-150501914		chr7:150501450-150501560			92.63	100.00	93.57	80.00	94.74	93.75	96.90	96.85	94.59	91.07	93.83	92.00	97.28	94.78	95.32	93.75	94.44	100.00	88.39	88.50	94.56	91.57	87.23	93.96	91.84	92.22	92.69	91.80	94.52	94.17	90.69	92.46	88.13	89.17	95.45	92.94	94.37	92.42	-1.95	0.642120	0.868138
K	cassette	AAMDC	chr11	+	chr11:77553675-77580767	chr11:77553675-77566390;chr11:77566529-77580767		chr11:77566391-77566528			2.17	2.15	3.45	2.22	2.78	0.79	0.00	4.26	9.68	0.00	3.23	2.94	4.55	1.85	6.25	6.67	4.35	0.00	2.50	4.08	4.00	3.33	1.64	2.44	0.70	1.82	2.86	0.00	3.70	2.67	3.70	4.65	0.99	0.00	0.00	1.79	1.57	2.94	1.37	0.186631	0.709176
N	cassette	PCNP	chr3	+	chr3:101304356-101311470	chr3:101304356-101309058;chr3:101309115-101311470		chr3:101309059-101309114			100.00	100.00	97.70	100.00	100.00	100.00	96.30	100.00	96.36	95.96	96.36	98.68	98.10	95.31	100.00	97.14	95.97	100.00	96.30	100.00	97.14	100.00	100.00	100.00	100.00	96.23	97.37	100.00	95.12	92.59	100.00	96.88	100.00	100.00	100.00	96.97	99.05	100.00	0.95	0.906968	0.972281
K	cassette	DNM2	chr19	+	chr19:10916644-10922939	chr19:10916644-10919244;chr19:10919257-10922939		chr19:10919245-10919256			59.71	71.83	59.75	NA	73.68	NA	66.94	60.31	66.30	66.67	64.71	64.86	61.71	48.09	57.03	51.89	53.04	62.50	54.55	49.09	58.06	57.81	62.24	63.38	NA	61.94	57.22	58.57	75.38	63.16	46.48	52.71	62.50	55.47	57.48	54.72	62.50	54.40	-8.10	0.050105	0.564103
K	intron_retention	PCK2	chr14	+	chr14:24572465-24572718				chr14:24572464-24572465;chr14:24572718-24572719		7.79	0.00	9.52	NA	10.34	NA	0.00	0.95	0.00	0.00	0.00	0.00	0.85	0.83	0.00	0.00	3.64	0.00	4.00	4.26	1.12	NA	12.90	NA	0.00	2.44	7.50	NA	8.89	0.00	5.71	6.52	0.00	4.17	3.12	4.00	0.00	3.35	3.35	0.283829	1.000000
K	jcn_only_AA	ENY2	chr8	+	chr8:110351620-110352672;chr8:110351620-110352717	chr8:110351620-110352719		chr8:110352673-110352717;chr8:110352718-110352719	chr8:110352717-110352718;chr8:110352719-110352720		12.96	14.88	12.14	10.19	10.53	10.55	16.31	10.86	11.56	13.33	12.84	13.15	11.70	12.22	12.57	10.41	12.09	9.87	10.50	8.11	8.18	8.80	7.47	12.41	21.09	11.18	8.70	8.57	9.40	6.83	11.90	9.94	8.94	12.58	13.07	6.44	13.29	11.54	-1.75	0.212148	0.663989
K	alternative_first_exon	ENSA,GCLM	chr1	-	chr1:150600069-150601889	chr1:150600069-150601536	chr1:150601890-150602072	chr1:150601537-150601616			9.86	3.12	9.71	2.17	3.45	3.23	1.87	7.14	6.25	2.64	3.23	2.88	2.77	7.63	7.84	2.39	2.25	2.86	2.04	9.84	9.09	2.63	6.78	7.14	0.00	20.59	7.50	3.70	7.39	6.54	10.91	10.13	13.95	1.83	6.30	4.38	2.41	9.85	7.44	0.033995	0.135473
K	intron_retention		chr19	-	chr19:39331200-39334481				chr19:39331199-39331200;chr19:39334481-39334482		5.83	1.22	7.14	4.76	2.63	NA	0.49	0.00	0.00	0.45	0.00	0.00	0.00	0.00	2.91	0.87	0.61	0.00	0.00	3.85	3.64	4.00	2.90	9.09	0.00	6.67	4.44	4.35	5.04	2.38	7.46	4.13	2.86	3.55	5.77	6.72	0.24	4.84	4.59	0.301723	1.000000
N	jcn_only_AD	ADAM28	chr8	+	chr8:24201098-24207376;chr8:24205893-24207376	chr8:24201102-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		7.59	7.04	9.48	5.56	7.84	NA	5.00	0.00	5.56	8.00	2.70	9.09	5.13	0.00	5.88	9.09	3.85	8.33	7.50	8.77	11.11	5.56	6.59	3.51	NA	9.52	8.86	11.11	0.00	5.26	8.62	11.39	2.13	1.79	5.33	2.08	5.13	8.11	2.98	0.855396	0.929940
N	alternative_acceptor		chr3	+	chr3:128526515-128542560;chr3:128526515-128531561;chr3:128526515-128526788;chr3:128526515-128583716	chr3:128526515-128532169		chr3:128526789-128531561;chr3:128531562-128532169;chr3:128532170-128542560;chr3:128542561-128583716	chr3:128531561-128531562;chr3:128532169-128532170;chr3:128542560-128542561;chr3:128583716-128583717		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	90.91	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AA	FZR1	chr19	+	chr19:3532094-3532574	chr19:3532094-3532414		chr19:3532415-3532574	chr19:3532574-3532575		100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	87.80	92.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	90.00	100.00	91.11	100.00	100.00	0.00	0.833427	0.934512
N	cassette	HEXDC	chr17	+	chr17:80399143-80400052	chr17:80399143-80399675;chr17:80399766-80400052		chr17:80399676-80399765			100.00	100.00	100.00	NA	90.91	100.00	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	NA	NA	NA	91.11	90.48	95.65	NA	100.00	NA	92.38	93.75	95.24	NA	90.48	100.00	92.31	95.65	93.94	NA	NA	NA	93.94	96.88	2.94	0.822579	0.941649
N	jcn_only_AA	LAIR1	chr19	-	chr19:54872851-54875901;chr19:54872814-54875901;chr19:54874623-54875901	chr19:54872817-54875901		chr19:54872814-54872816;chr19:54872817-54872850;chr19:54872851-54874622	chr19:54872813-54872814;chr19:54872816-54872817;chr19:54872850-54872851		80.56	89.83	80.71	85.00	82.76	90.91	81.37	81.51	82.09	84.70	83.27	82.81	83.97	81.97	79.27	83.69	84.30	83.61	92.86	80.75	78.99	81.33	82.07	76.09	100.00	81.17	81.64	81.75	79.85	80.41	79.12	80.91	80.65	83.41	81.86	80.74	86.90	80.96	-5.94	0.064902	0.663989
K	jcn_only_AA	CTSA,PCMTD2	chr20	+	chr20:44523381-44523471	chr20:44523381-44523461		chr20:44523462-44523471	chr20:44523471-44523472		100.00	94.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.19	94.94	96.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.42	96.89	96.14	100.00	100.00	100.00	98.07	100.00	1.93	0.374767	0.663989
N	cassette	PILRA	chr7	+	chr7:99996964-100014955;chr7:99996964-100006076;chr7:99996964-99997445;chr7:99996964-100001374;chr7:99996964-99997407;chr7:99996964-99999620	chr7:99996964-99997203;chr7:99997236-100001374,chr7:99997236-99999620,chr7:99997236-99997407,chr7:99997236-100014955,chr7:99997236-100006076,chr7:99997236-99997445		chr7:99997204-99997235			94.62	93.81	91.53	95.28	95.38	95.22	99.77	99.30	99.38	99.65	100.00	99.46	100.00	99.50	99.36	99.48	99.43	99.75	95.30	94.80	95.85	97.54	95.61	97.01	96.40	97.07	96.07	98.84	98.86	98.75	91.45	89.83	91.08	95.05	95.02	96.13	95.85	95.94	0.09	0.974046	0.994632
K	cassette	SARAF	chr8	-	chr8:29927576-29940362	chr8:29927576-29931392;chr8:29931572-29940362		chr8:29931393-29931571			92.47	91.07	87.70	NA	93.33	NA	91.44	95.61	89.47	92.92	91.83	95.00	90.51	93.49	89.20	91.43	88.67	93.51	NA	93.64	89.29	100.00	86.05	94.40	NA	93.20	89.05	92.00	88.50	92.50	94.37	87.76	92.86	91.10	90.48	92.27	91.25	93.56	2.31	0.010338	0.314700
N	alternative_donor	CLN5	chr13	+	chr13:77572221-77574592;chr13:77570263-77574592	chr13:77574131-77574592		chr13:77570263-77572220;chr13:77572221-77574130	chr13:77570262-77570263;chr13:77572220-77572221		5.00	5.26	4.44	NA	5.26	8.33	1.89	2.04	1.63	0.00	0.00	0.00	2.17	2.33	2.13	3.23	1.56	3.45	7.69	4.35	3.03	8.33	2.78	4.76	NA	5.13	5.08	0.00	3.45	6.67	10.00	3.61	9.09	3.70	3.03	4.76	5.26	4.67	-0.58	0.829885	0.949228
N	jcn_only_AD	MRPL40	chr22	+	chr22:19420329-19420787;chr22:19420131-19420787	chr22:19420383-19420787		chr22:19420131-19420328;chr22:19420329-19420382	chr22:19420130-19420131;chr22:19420328-19420329		0.00	0.00	0.00	NA	13.33	8.33	7.50	8.33	6.58	13.64	7.69	0.00	9.76	8.82	7.69	9.68	16.00	12.50	0.00	7.69	6.25	9.09	17.24	7.69	0.00	6.82	8.00	0.00	7.69	3.03	0.00	5.26	7.41	11.11	0.00	0.00	3.71	7.26	3.55	0.654060	0.821077
N	jcn_only_AA	ASCC2	chr22	-	chr22:30198128-30200626;chr22:30198123-30200626;chr22:30198198-30200626	chr22:30198231-30200626		chr22:30198123-30198127;chr22:30198128-30198197;chr22:30198198-30198230	chr22:30198122-30198123;chr22:30198127-30198128;chr22:30198197-30198198		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AA	NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236068;chr1:41235088-41236383	chr1:41235088-41236380		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		76.92	87.27	82.22	77.78	89.83	94.12	78.85	64.29	78.38	76.67	80.52	61.90	80.30	57.89	78.43	70.15	82.61	76.67	96.77	71.79	91.89	69.57	84.62	66.67	82.35	93.75	86.54	71.43	78.31	82.50	88.10	80.39	90.24	83.33	83.33	80.95	84.81	74.36	-10.45	0.135308	0.663989
K	cassette	ELOVL1	chr1	-	chr1:43830680-43831234	chr1:43830680-43830856;chr1:43831048-43831234		chr1:43830857-43831047			77.22	65.79	75.20	72.73	79.07	NA	98.20	98.13	96.75	97.17	97.69	97.78	96.28	97.58	95.42	94.66	93.64	100.00	68.75	81.33	86.67	83.33	73.91	76.74	NA	94.44	75.47	91.38	93.10	85.19	87.80	82.11	66.67	85.19	76.79	86.96	68.75	91.12	22.37	0.259566	0.709176
N	cassette	DDIT3	chr12	-	chr12:57910964-57911488	chr12:57910964-57911051;chr12:57911379-57911488		chr12:57911052-57911378			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.85	100.00	89.47	100.00	100.00	100.00	100.00	100.00	0.00	0.456869	0.756173
K	intron_retention	TBC1D17	chr19	+	chr19:50385658-50386020				chr19:50385657-50385658;chr19:50386020-50386021		58.82	0.00	48.57	NA	26.67	NA	0.00	NA	13.33	NA	NA	NA	0.00	53.85	18.52	0.00	8.33	NA	6.25	54.55	25.00	NA	39.39	41.67	0.00	68.75	30.00	NA	23.53	36.36	23.53	26.67	6.67	36.36	50.00	45.45	0.00	54.55	54.55	0.006642	1.000000
K	cassette	COG4	chr16	-	chr16:70548413-70551528	chr16:70548413-70549770;chr16:70549944-70551528		chr16:70549771-70549943			0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	4.17	0.00	0.00	NA	NA	6.25	NA	NA	5.00	NA	0.00	0.00	3.70	NA	0.00	NA	NA	4.76	NA	8.33	3.45	6.25	0.00	0.00	0.00	0.391002	0.709410
K	intron_retention	LST1	chr6	+	chr6:31555096-31555720				chr6:31555095-31555096;chr6:31555720-31555721		6.67	9.33	NA	0.00	4.65	0.00	4.65	0.00	NA	0.00	1.59	0.00	5.32	5.26	NA	0.00	1.23	0.00	6.38	18.75	18.18	0.00	13.33	0.00	4.20	9.09	27.78	8.33	14.58	9.30	NA	NA	5.41	0.00	9.76	2.44	5.37	6.67	1.30	0.294057	1.000000
N	cassette	ARHGAP30	chr1	-	chr1:161026319-161039317;chr1:161026323-161039317;chr1:161024496-161039317	chr1:161026319-161029403,chr1:161024496-161029403,chr1:161026323-161029403;chr1:161029507-161039317		chr1:161029404-161029506			90.38	100.00	93.98	NA	NA	NA	94.50	99.19	94.20	100.00	96.43	NA	95.16	97.58	97.26	96.00	94.74	NA	NA	100.00	NA	NA	95.45	NA	100.00	100.00	96.23	100.00	93.75	NA	100.00	97.14	NA	100.00	100.00	NA	97.58	99.59	2.02	0.842172	0.947057
N	jcn_only_AD	ADAM28	chr8	+	chr8:24201098-24207376;chr8:24201102-24207376	chr8:24205893-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		0.00	7.04	1.42	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.80	0.00	0.00	0.00	0.00	4.46	4.26	1.79	1.33	2.08	0.00	0.00	0.00	0.194604	0.657607
K	intron_retention	USF1	chr1	-	chr1:161009800-161009991				chr1:161009799-161009800;chr1:161009991-161009992		15.49	8.82	8.65	12.82	10.19	14.63	1.79	2.60	4.21	2.56	4.48	11.11	3.85	6.17	7.61	2.63	4.69	4.17	9.43	16.67	10.77	12.50	11.00	23.08	11.70	8.33	12.23	12.35	9.65	13.58	11.54	13.69	10.71	13.10	13.27	10.68	9.12	9.93	0.81	0.752524	1.000000
N	alternative_donor	CD58	chr1	-	chr1:117061890-117064527	chr1:117061890-117062140		chr1:117062141-117064527	chr1:117064527-117064528		4.76	6.98	7.58	6.90	3.64	5.08	7.32	10.87	11.11	14.71	13.46	9.92	8.00	8.20	14.00	18.12	13.95	10.58	1.72	5.56	5.48	5.56	3.79	7.79	6.25	2.08	5.13	6.15	5.04	6.10	4.35	4.41	1.96	7.95	6.00	7.41	6.62	5.16	-1.46	0.733292	0.890213
N	jcn_only_AA		chr19	+	chr19:39964162-39964586;chr19:39964162-39964717	chr19:39964162-39964602		chr19:39964587-39964602;chr19:39964603-39964717	chr19:39964602-39964603;chr19:39964717-39964718		96.97	100.00	97.60	100.00	98.99	87.50	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.75	98.84	95.24	98.25	96.15	100.00	94.67	98.29	95.24	100.00	97.50	96.72	96.69	97.53	97.59	92.50	96.97	100.00	97.36	-2.64	0.080295	0.663989
N	jcn_only_AA	PPP1R12C	chr19	-	chr19:55604431-55604520	chr19:55604445-55604520		chr19:55604431-55604444	chr19:55604430-55604431		100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	95.16	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	0.00	0.847198	0.938257
N	jcn_only_AA	PEF1	chr1	-	chr1:32096352-32098095;chr1:32096316-32098095;chr1:32096322-32098095;chr1:32096334-32098095	chr1:32096444-32098095		chr1:32096316-32096321;chr1:32096322-32096333;chr1:32096334-32096351;chr1:32096352-32096443	chr1:32096315-32096316;chr1:32096321-32096322;chr1:32096333-32096334;chr1:32096351-32096352		98.11	100.00	100.00	100.00	95.92	92.86	100.00	96.92	97.40	95.12	96.91	97.22	96.36	100.00	100.00	97.18	100.00	94.55	90.48	100.00	98.00	100.00	98.25	95.56	NA	100.00	97.26	91.49	97.87	96.43	96.30	97.26	100.00	100.00	100.00	95.31	100.00	99.06	-0.94	0.575252	0.800363
K	alternative_acceptor	TEP1	chr14	-	chr14:20837040-20837502	chr14:20837062-20837502		chr14:20837040-20837061	chr14:20837039-20837040		87.50	81.82	94.12	NA	100.00	96.00	86.67	91.67	81.82	NA	NA	NA	100.00	NA	90.00	NA	NA	NA	95.24	85.71	90.00	NA	NA	NA	100.00	100.00	NA	NA	NA	94.44	96.00	100.00	100.00	90.00	NA	96.00	97.62	91.67	-5.95	0.679634	0.880186
K	intron_retention	FAM129B	chr9	-	chr9:130279496-130280104				chr9:130279495-130279496;chr9:130280104-130280105		3.24	6.67	4.88	0.00	1.67	NA	0.00	0.00	0.00	0.00	0.24	0.00	0.00	0.00	0.00	0.81	0.00	0.00	NA	2.26	2.78	6.15	5.73	5.36	0.00	2.27	3.95	3.01	1.39	3.12	2.25	5.05	0.00	4.05	3.74	3.92	0.00	2.25	2.25	0.750937	1.000000
K	intron_retention	CXXC1	chr18	-	chr18:47813010-47813109				chr18:47813009-47813010;chr18:47813109-47813110		2.38	0.00	5.88	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	8.33	0.00	0.00	0.00	2.22	5.00	0.00	2.94	4.17	0.00	3.03	NA	7.14	4.11	8.33	0.00	7.14	8.33	0.00	1.19	1.19	0.504172	1.000000
N	alternative_donor	NADK	chr1	-	chr1:1688750-1693329;chr1:1688750-1689803	chr1:1688750-1693390		chr1:1689804-1693329;chr1:1693330-1693390	chr1:1693329-1693330;chr1:1693390-1693391		98.08	97.30	94.94	NA	100.00	NA	99.30	98.83	99.54	100.00	100.00	100.00	98.56	98.56	97.34	97.67	100.00	100.00	100.00	98.20	100.00	100.00	100.00	98.33	82.35	98.23	98.25	97.06	100.00	98.39	99.32	99.22	95.83	95.12	97.14	97.83	97.93	98.40	0.47	0.322209	0.650093
K	jcn_only_AA	SMG7	chr1	+	chr1:183520326-183522111	chr1:183520326-183520952		chr1:183520953-183522111	chr1:183522111-183522112		95.45	100.00	100.00	NA	NA	100.00	95.65	100.00	100.00	100.00	100.00	100.00	92.86	100.00	97.30	98.41	100.00	97.06	NA	100.00	NA	93.33	100.00	100.00	NA	100.00	100.00	93.75	NA	97.73	NA	100.00	100.00	100.00	100.00	100.00	97.83	100.00	2.17	0.370022	0.663989
N	alternative_acceptor	SIRT6	chr19	-	chr19:4175211-4175676;chr19:4175109-4175676	chr19:4175149-4175676		chr19:4175109-4175148;chr19:4175149-4175210	chr19:4175108-4175109;chr19:4175148-4175149		80.00	82.35	72.73	72.73	72.73	81.82	80.00	84.62	76.47	80.00	86.67	NA	75.00	80.00	87.50	100.00	86.96	NA	68.75	70.59	76.92	81.82	80.00	NA	80.95	80.00	81.82	81.25	80.95	61.11	80.00	80.00	70.00	70.00	80.00	75.00	77.50	80.00	2.50	0.343338	0.709013
N	cassette	DAB2	chr5	-	chr5:39377385-39388900;chr5:39383374-39388900	chr5:39383374-39388406,chr5:39377385-39388406;chr5:39388470-39388900		chr5:39388407-39388469			100.00	100.00	98.99	NA	100.00	NA	97.10	94.52	95.15	96.49	96.49	100.00	97.33	89.47	92.31	94.87	96.95	100.00	100.00	100.00	100.00	100.00	95.60	100.00	100.00	100.00	100.00	96.77	95.60	NA	NA	100.00	100.00	98.91	98.06	100.00	100.00	100.00	0.00	0.351883	0.709176
K	intron_retention	APRT	chr16	-	chr16:88876557-88876830				chr16:88876556-88876557;chr16:88876830-88876831		0.00	3.37	0.00	5.71	3.24	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.00	1.83	3.51	3.25	7.69	0.39	NA	3.70	0.00	2.52	1.01	0.00	4.88	1.48	0.00	2.74	2.76	0.72	0.00	-0.72	0.248677	1.000000
K	alternative_acceptor	DDX39A	chr19	-	chr19:14520686-14521027	chr19:14520794-14521027		chr19:14520686-14520793	chr19:14520685-14520686		10.26	12.87	18.00	13.33	11.90	12.50	5.26	8.33	9.09	5.48	5.75	2.63	3.37	4.00	8.33	3.45	3.75	3.03	10.94	14.00	11.76	11.43	10.10	10.26	19.70	23.08	14.29	13.56	12.94	13.11	13.73	15.62	8.05	9.20	8.14	13.64	9.50	12.00	2.50	0.551844	0.824386
N	intron_retention		chr22	-	chr22:50965168-50968332				chr22:50965167-50965168;chr22:50968332-50968333		73.44	32.28	64.20	49.28	38.36	50.40	100.00	97.78	98.04	96.92	93.48	95.45	100.00	98.73	98.33	96.34	96.55	98.99	60.61	89.47	73.52	75.25	67.84	81.37	73.43	91.24	85.78	86.21	78.16	86.74	78.93	82.77	45.75	66.67	65.91	74.01	67.02	90.35	23.33	0.081677	1.000000
N	alternative_acceptor	PCSK7	chr11	-	chr11:117076227-117077396;chr11:117072636-117077396	chr11:117077073-117077396		chr11:117072636-117076226;chr11:117076227-117077072	chr11:117072635-117072636;chr11:117076226-117076227		94.74	80.00	66.67	NA	94.12	50.00	100.00	84.62	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	56.52	100.00	83.33	NA	88.89	NA	86.21	85.71	84.62	NA	100.00	100.00	84.62	81.25	90.91	75.00	100.00	100.00	88.56	90.22	1.66	0.438069	0.747555
K	alternative_first_exon	SLC16A3	chr17	+	chr17:80186406-80193858,chr17:80176061-80193858,chr17:80193106-80193858,chr17:80188939-80193858,chr17:80193580-80193858;chr17:80190236-80193858;chr17:80192877-80193858;chr17:80186983-80193858	chr17:80186422-80193858	chr17:80190108-80190235;chr17:80192775-80192876;chr17:80186908-80186982	chr17:80186282-80186421			1.08	5.13	0.68	0.00	0.00	NA	1.69	0.75	1.59	1.72	1.46	0.00	2.33	1.22	0.95	0.98	1.09	0.00	0.00	1.92	2.33	0.00	0.59	3.85	2.22	1.11	0.33	0.00	0.99	0.00	1.87	1.76	0.00	0.95	1.10	0.00	1.96	1.17	-0.79	0.503450	0.646256
K	intron_retention		chr11	-	chr11:62371514-62371584				chr11:62371513-62371514;chr11:62371584-62371585		12.12	8.33	11.39	17.24	11.32	5.88	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	7.89	4.55	15.91	16.00	14.00	7.14	5.26	8.33	6.06	9.09	10.17	3.23	15.38	18.87	11.63	11.76	4.88	11.63	6.57	6.44	-0.13	0.786489	1.000000
K	jcn_only_AA	ARFRP1	chr20	-	chr20:62333251-62333487	chr20:62333253-62333487		chr20:62333251-62333252	chr20:62333250-62333251		94.87	86.67	88.37	94.29	92.00	97.67	97.30	95.92	96.00	93.62	100.00	100.00	100.00	98.08	94.64	97.56	100.00	94.44	100.00	96.88	90.74	93.33	95.65	94.59	100.00	100.00	87.50	100.00	100.00	93.67	95.00	88.00	96.00	93.75	96.00	94.12	98.65	96.40	-2.25	0.955948	0.984403
K	cassette	TREM2	chr6	-	chr6:41126519-41127529	chr6:41126519-41126610;chr6:41126845-41127529		chr6:41126611-41126844			82.69	90.29	100.00	85.84	92.71	86.94	94.49	92.86	92.50	91.99	92.49	91.30	96.26	92.59	NA	92.91	93.54	92.68	86.42	68.18	90.33	88.10	89.93	85.71	89.15	88.46	92.59	91.57	94.51	93.21	92.11	93.10	87.35	92.04	93.68	87.59	89.72	90.28	0.56	0.324641	0.709176
N	coord_cassette	GLS	chr2	+	chr2:191818353-191827555	chr2:191818353-191819309;chr2:191819387-191819480;chr2:191819545-191827555		chr2:191819310-191819386;chr2:191819481-191819544			100.00	100.00	100.00	100.00	100.00	96.43	100.00	NA	100.00	NA	100.00	100.00	100.00	90.91	100.00	NA	NA	NA	100.00	NA	97.06	100.00	100.00	96.55	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.30	100.00	96.43	97.44	98.86	100.00	100.00	0.00	0.391002	0.647127
K	intron_retention		chr11	+	chr11:47436711-47436838				chr11:47436710-47436711;chr11:47436838-47436839		10.42	9.26	14.42	18.37	12.77	13.51	5.00	5.17	7.32	13.04	7.46	8.33	6.00	8.33	6.38	13.70	12.33	0.00	13.79	9.09	8.33	16.92	18.29	10.34	8.11	9.72	12.73	16.67	12.96	10.00	14.08	14.89	8.20	10.23	16.82	9.68	8.15	9.41	1.25	0.823258	1.000000
N	alternative_acceptor		chr14	+	chr14:105223098-105225770;chr14:105223098-105225555	chr14:105223098-105225764		chr14:105225556-105225764;chr14:105225765-105225770	chr14:105225764-105225765;chr14:105225770-105225771		85.19	91.01	88.89	88.10	93.88	88.33	100.00	NA	100.00	93.33	96.77	NA	96.08	NA	91.30	94.12	92.31	NA	89.19	87.50	90.00	76.92	90.20	81.82	87.63	90.91	85.37	85.71	88.24	76.19	79.17	86.05	86.96	84.21	85.71	74.07	90.10	86.34	-3.75	0.103014	0.598353
N	alternative_acceptor	DGAT1	chr8	-	chr8:145541252-145541333	chr8:145541267-145541333		chr8:145541252-145541266	chr8:145541251-145541252		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	11.76	0.00	0.00	0.00	2.63	0.00	0.00	2.70	0.00	0.00	3.70	2.08	0.00	0.00	0.00	0.363217	0.709013
K	alternative_donor	GRINA	chr8	+	chr8:145064368-145065367;chr8:145065076-145065367	chr8:145064480-145065367		chr8:145064368-145064479;chr8:145064480-145065075	chr8:145064367-145064368;chr8:145064479-145064480		12.93	16.67	14.12	21.43	16.67	NA	8.47	11.45	14.06	9.44	8.46	10.96	10.81	12.66	14.48	7.49	9.24	11.78	NA	10.67	11.63	8.99	7.21	6.77	13.33	13.49	14.77	8.53	7.08	7.09	8.52	9.54	NA	10.69	9.74	11.24	12.07	12.05	-0.02	0.732102	0.890213
K	cassette	ZBTB8OS	chr1	-	chr1:33097481-33099245	chr1:33097481-33097808;chr1:33097947-33099245		chr1:33097809-33097946			4.17	0.00	3.23	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	6.67	4.76	0.00	0.00	NA	0.00	10.00	1.89	0.00	0.00	0.00	1.49	0.00	0.00	0.00	0.00	4.55	0.00	0.00	1.37	5.00	3.45	4.76	0.00	2.08	2.08	0.144748	0.709176
N	alternative_acceptor	HSP90B1	chr12	+	chr12:104341209-104341410;chr12:104341209-104344022	chr12:104341209-104347163		chr12:104341411-104344022;chr12:104344023-104347163	chr12:104344022-104344023;chr12:104347163-104347164		0.00	0.00	0.00	0.00	0.00	0.00	18.00	25.00	31.43	22.22	20.00	22.58	17.31	25.00	38.46	25.00	30.43	16.67	0.00	0.00	3.23	0.00	0.00	0.00	0.00	8.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	4.00	0.559269	0.828583
K	mutually_exclusive	C20orf24	chr20	+	chr20:35236222-35238003,chr20:35238162-35240412	chr20:35236222-35236292,chr20:35236404-35240412	chr20:35238004-35238161	chr20:35236293-35236403			2.78	9.23	5.22	0.00	4.76	8.33	1.67	1.37	1.72	4.08	2.74	5.26	1.87	1.24	1.89	1.90	2.94	0.00	4.88	2.86	2.26	2.50	1.02	3.33	0.00	2.13	2.44	3.17	1.37	1.85	3.45	2.50	1.54	3.06	0.95	3.19	1.77	2.46	0.69	0.552674	0.637701
K	intron_retention	DDX5	chr17	-	chr17:62496892-62497174				chr17:62496891-62496892;chr17:62497174-62497175		99.62	100.00	99.55	100.00	100.00	NA	90.48	93.75	97.50	92.59	97.56	100.00	95.00	88.33	99.12	90.91	88.10	100.00	100.00	100.00	97.56	99.61	99.17	99.40	NA	99.67	99.24	98.39	100.00	98.16	100.00	99.24	100.00	99.34	98.80	99.07	100.00	99.65	-0.35	0.970373	1.000000
K	jcn_only_AA	OTUB1,SCYL1	chr11	+	chr11:65304600-65305282	chr11:65304600-65305279		chr11:65305280-65305282	chr11:65305282-65305283		89.83	85.19	80.33	90.57	87.32	91.43	91.49	91.67	93.10	88.46	91.23	91.49	94.55	95.12	91.04	90.28	92.54	92.45	89.22	90.91	87.90	88.89	87.84	91.49	89.33	91.11	85.92	90.74	89.71	92.86	90.41	87.37	89.58	90.16	81.82	91.03	89.45	91.01	1.55	0.302890	0.663989
N	cassette	SAMD4A	chr14	+	chr14:55243259-55251254;chr14:55250129-55251254	chr14:55250129-55251057,chr14:55243259-55251057;chr14:55251100-55251254		chr14:55251058-55251099			12.50	0.00	0.00	6.82	6.67	10.94	0.00	11.25	4.76	10.61	2.78	11.81	0.00	14.74	0.00	6.06	4.65	8.44	5.26	8.82	6.67	16.67	NA	15.38	0.00	22.92	0.00	8.00	5.26	13.62	22.22	NA	14.29	14.29	10.00	13.67	0.00	13.62	13.62	0.004802	0.240902
K	intron_retention	TNFRSF18	chr1	-	chr1:1139349-1139413				chr1:1139348-1139349;chr1:1139413-1139414		31.25	22.73	31.25	29.58	38.61	31.58	NA	NA	NA	31.25	NA	NA	NA	NA	NA	15.79	NA	NA	17.02	7.14	10.00	37.68	42.03	50.00	6.52	5.56	NA	19.80	30.00	25.00	20.41	NA	17.14	35.38	35.94	33.96	17.08	13.78	-3.30	0.932055	1.000000
N	alternative_acceptor	NUCKS1	chr1	-	chr1:205688802-205689628	chr1:205688805-205689628		chr1:205688802-205688804	chr1:205688801-205688802		97.50	100.00	94.29	100.00	100.00	100.00	96.63	100.00	91.76	93.33	97.37	95.65	94.74	95.83	94.62	94.12	93.41	92.50	90.91	100.00	89.71	100.00	95.00	100.00	96.59	90.91	94.92	100.00	98.46	100.00	100.00	90.00	95.29	94.12	98.11	100.00	95.94	98.75	2.81	0.399641	0.716354
K	intron_retention		chr1	+	chr1:156563348-156563673				chr1:156563347-156563348;chr1:156563673-156563674		3.45	2.06	7.32	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	NA	0.00	1.96	0.00	0.00	1.24	0.00	2.90	4.00	4.62	0.00	3.45	9.09	0.00	0.00	1.54	0.00	0.00	3.03	3.60	4.35	0.00	0.00	1.75	0.00	-1.75	0.377047	1.000000
K	cassette	DPM1	chr20	-	chr20:49557471-49558567	chr20:49557471-49557665;chr20:49557747-49558567		chr20:49557666-49557746			10.53	5.88	10.34	4.17	4.88	0.00	6.06	7.32	6.12	7.69	5.06	6.52	6.12	8.33	6.78	6.10	4.94	8.11	6.25	8.57	5.41	7.84	6.56	5.26	7.14	6.52	7.84	5.41	6.25	6.06	9.09	6.00	0.00	4.55	3.17	3.77	6.09	8.45	2.36	0.032242	0.450829
K	intron_retention	SPCS3	chr4	+	chr4:177241371-177243320				chr4:177241370-177241371;chr4:177243320-177243321		1.67	0.00	1.92	0.00	0.00	5.26	0.00	1.19	0.00	0.00	1.75	0.00	0.83	1.27	0.00	0.99	1.49	1.19	0.00	0.00	0.00	0.00	2.78	3.23	0.00	4.35	0.00	0.00	2.17	0.00	0.00	2.78	0.00	3.70	0.00	1.92	0.00	1.23	1.23	0.293551	1.000000
N	alternative_acceptor	PCBP2	chr12	+	chr12:53861628-53862560;chr12:53861628-53861966	chr12:53861628-53862563		chr12:53861967-53862560;chr12:53862561-53862563	chr12:53862560-53862561;chr12:53862563-53862564		20.00	33.58	25.40	27.14	22.06	15.00	33.16	31.18	36.00	31.09	29.87	32.77	35.23	34.83	31.47	33.18	30.05	34.25	24.64	26.87	38.10	25.45	27.03	20.74	44.23	19.67	17.20	24.00	26.92	22.92	19.30	23.42	25.61	19.51	24.65	22.51	33.37	23.44	-9.93	0.092663	0.597021
N	jcn_only_AD	AAMDC	chr11	+	chr11:77532288-77553524;chr11:77532227-77553524	chr11:77532284-77553524		chr11:77532227-77532283;chr11:77532284-77532287	chr11:77532226-77532227;chr11:77532283-77532284		0.00	0.00	0.00	0.00	4.17	5.56	0.00	0.00	0.00	0.00	6.67	0.00	11.11	7.69	11.11	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.865259	0.930693
N	cassette	C19orf60	chr19	+	chr19:18699888-18701663;chr19:18699888-18702917	chr19:18699888-18700222;chr19:18700494-18702917,chr19:18700494-18701663		chr19:18700223-18700493			88.10	89.67	97.14	94.74	92.00	89.41	93.40	100.00	100.00	91.76	94.34	92.65	96.19	94.74	97.44	96.05	96.00	93.10	91.46	88.89	91.61	96.67	92.86	90.91	91.49	95.65	96.67	91.84	95.92	95.31	91.67	92.50	85.00	89.36	89.23	85.14	91.47	93.20	1.73	0.429957	0.736841
K	intron_retention		chr21	-	chr21:44515854-44521475				chr21:44515853-44515854;chr21:44521475-44521476		8.33	5.08	13.89	0.00	12.20	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.14	3.23	3.39	0.00	3.33	14.29	3.45	10.71	7.46	23.53	15.38	20.00	3.03	8.00	5.45	6.67	5.00	6.25	5.26	19.44	11.54	25.00	4.21	11.31	7.10	0.532533	1.000000
N	alternative_donor	PRKAG2	chr7	-	chr7:151254319-151257609;chr7:151254319-151255595	chr7:151254319-151254391		chr7:151254392-151255595;chr7:151255596-151257609	chr7:151255595-151255596;chr7:151257609-151257610		5.75	2.56	9.09	1.89	2.04	1.35	2.17	0.00	0.00	0.88	1.08	0.00	3.03	2.27	1.89	2.08	1.89	0.00	0.00	2.56	0.00	3.19	4.00	4.00	0.00	2.50	2.94	1.41	0.00	0.00	1.14	2.08	0.00	2.34	3.45	2.33	1.08	2.38	1.30	0.301342	0.650093
N	jcn_only_AD	MBD4	chr3	-	chr3:129150422-129151345;chr3:129150422-129151940	chr3:129150422-129151398					18.33	28.40	28.57	0.00	18.97	25.00	6.06	7.69	0.00	0.00	10.00	NA	9.76	6.25	0.00	11.11	5.19	NA	31.88	22.45	19.77	0.00	11.63	NA	23.68	9.76	20.00	6.67	7.14	10.53	35.48	32.14	22.54	27.27	16.46	15.38	23.11	14.04	-9.07	0.561877	0.778873
N	cassette	ADAM28	chr8	+	chr8:24208824-24211896;chr8:24209566-24211896	chr8:24209566-24211282,chr8:24208824-24211282;chr8:24211346-24211896		chr8:24211283-24211345			92.39	99.04	98.43	94.12	94.87	93.75	91.67	91.67	93.88	86.67	94.12	92.31	100.00	87.50	95.45	100.00	100.00	90.00	88.28	95.56	90.21	94.74	94.35	96.10	79.17	92.86	97.98	90.48	97.73	94.12	91.67	93.31	86.21	92.77	88.64	94.70	89.97	92.03	2.06	0.734431	0.907341
N	jcn_only_AD	IKBKB	chr8	+	chr8:42182880-42183487;chr8:42180013-42183487	chr8:42180017-42183487		chr8:42180013-42180016;chr8:42180017-42182879	chr8:42180012-42180013;chr8:42180016-42180017		0.00	0.00	0.00	0.00	6.45	9.52	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	10.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.363217	0.657607
N	intron_retention		chr20	-	chr20:57570815-57572657				chr20:57570814-57570815;chr20:57572657-57572658		9.57	6.87	10.78	24.00	12.71	26.90	10.00	18.81	13.21	19.70	18.64	21.74	50.00	100.00	50.00	50.00	NA	NA	7.51	10.95	34.72	24.67	12.71	29.66	12.10	21.56	17.89	34.04	27.62	35.58	11.74	10.02	6.83	16.52	17.15	24.23	8.75	15.27	6.52	0.950942	1.000000
N	alternative_donor		chr3	-	chr3:129288801-129289432;chr3:129288801-129289721	chr3:129288801-129289628		chr3:129289433-129289628;chr3:129289629-129289721	chr3:129289628-129289629;chr3:129289721-129289722		97.06	88.71	96.32	NA	NA	NA	98.90	100.00	100.00	99.01	99.50	100.00	99.53	100.00	98.72	98.61	98.91	100.00	91.67	100.00	100.00	100.00	96.15	100.00	96.43	100.00	98.61	100.00	96.00	100.00	NA	100.00	92.86	92.11	96.61	98.36	94.65	100.00	5.35	0.042653	0.375646
N	alternative_donor	GLTSCR2	chr19	+	chr19:48259080-48259784;chr19:48259245-48259784;chr19:48259263-48259784	chr19:48259604-48259784		chr19:48259080-48259244;chr19:48259245-48259262;chr19:48259263-48259603	chr19:48259079-48259080;chr19:48259244-48259245;chr19:48259262-48259263		1.96	0.43	0.96	1.36	0.79	0.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67	1.05	0.00	0.63	3.12	0.85	3.28	1.28	2.63	0.18	0.00	0.88	1.77	0.73	1.53	5.13	1.74	0.83	1.70	1.39	1.94	0.30	0.98	0.68	0.179941	0.563271
K	intron_retention	ENTPD6	chr20	+	chr20:25204794-25205840				chr20:25204793-25204794;chr20:25205840-25205841		17.50	13.64	20.83	NA	27.78	NA	4.44	10.26	7.89	5.88	11.63	NA	13.89	9.68	11.90	9.52	5.41	NA	9.09	21.43	17.65	16.67	21.62	NA	20.00	13.89	22.58	10.00	21.21	20.00	12.50	18.52	20.00	14.29	17.24	22.73	13.77	13.20	-0.57	0.990218	1.000000
N	alternative_donor	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677171-197677806;chr3:197677631-197677806	chr3:197677093-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		81.20	89.14	81.12	79.34	82.29	85.93	98.03	95.35	94.44	95.24	96.18	95.45	98.06	95.00	98.17	94.55	94.96	97.94	82.55	68.42	84.87	68.38	81.37	69.17	93.83	80.39	86.60	91.35	96.15	92.19	52.70	65.69	82.49	73.48	80.62	73.78	91.48	80.80	-10.69	0.148647	0.563084
N	alternative_donor	TAP1	chr6	-	chr6:32813563-32814844	chr6:32813563-32813644		chr6:32813645-32814844	chr6:32814844-32814845		1.65	6.67	3.02	2.24	8.06	1.76	5.95	0.44	0.61	1.52	5.08	0.65	8.00	0.43	0.66	1.46	7.89	1.46	5.63	1.96	1.96	1.83	3.90	1.44	11.32	1.03	3.01	2.19	5.41	1.05	1.16	1.77	8.57	3.07	2.56	1.33	7.33	1.09	-6.24	0.000373	0.062023
N	cassette	USF1	chr1	-	chr1:161011202-161011905	chr1:161011202-161011524;chr1:161011637-161011905		chr1:161011525-161011636			100.00	100.00	96.67	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	NA	NA	100.00	100.00	NA	90.91	NA	100.00	100.00	97.56	100.00	100.00	100.00	94.29	92.75	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SMC5	chr9	+	chr9:72965388-72967106	chr9:72965388-72966440		chr9:72966441-72967106	chr9:72967106-72967107		0.00	0.00	4.55	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	7.69	5.88	0.00	NA	NA	0.00	0.00	5.26	0.00	0.00	5.26	0.00	0.00	0.00	0.801666	0.926022
N	alternative_last_exon		chr11	+	chr11:117066632-117073717	chr11:117066632-117066719	chr11:117073718-117073909	chr11:117066720-117068161			87.18	83.75	86.96	86.67	87.50	97.30	94.32	95.16	87.50	100.00	93.88	97.22	95.83	94.21	96.88	93.75	96.55	95.45	89.74	84.91	95.24	NA	78.38	85.71	92.98	85.59	74.19	92.86	88.64	97.62	97.22	83.33	82.93	85.00	91.67	90.24	91.36	90.69	-0.67	0.807749	0.889002
K	intron_retention	STAB1	chr3	+	chr3:52548230-52548380				chr3:52548229-52548230;chr3:52548380-52548381		5.83	14.77	6.93	0.00	1.72	0.00	0.96	0.00	0.00	0.00	1.02	0.00	1.76	0.00	0.00	0.42	1.60	0.00	9.47	7.46	NA	2.89	6.68	2.04	13.58	0.00	5.36	1.23	5.96	0.00	0.00	1.75	11.54	1.26	6.23	1.88	10.50	0.00	-10.50	0.100662	1.000000
K	intron_retention	HARS2	chr5	+	chr5:140076992-140077153				chr5:140076991-140076992;chr5:140077153-140077154		6.06	0.00	8.16	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	6.25	0.00	0.00	17.39	NA	7.69	2.50	0.00	0.00	8.00	12.00	8.93	0.00	9.68	4.08	13.46	0.00	6.06	6.06	0.089474	1.000000
K	intron_retention	CIRBP	chr19	+	chr19:1271361-1272967				chr19:1271360-1271361;chr19:1272967-1272968		85.56	86.81	85.57	89.92	85.99	84.51	81.13	78.87	77.11	77.50	75.00	80.00	81.54	79.73	85.71	79.75	84.72	69.57	84.43	88.61	88.00	89.61	94.12	90.91	84.93	83.50	85.06	87.69	93.02	88.24	90.65	90.51	86.86	89.47	85.19	89.15	84.68	84.53	-0.15	0.833088	1.000000
K	intron_retention	C19orf70	chr19	-	chr19:5679408-5679596				chr19:5679407-5679408;chr19:5679596-5679597		0.00	1.66	0.00	1.18	1.32	0.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.99	5.00	0.96	0.00	0.88	2.04	1.12	NA	0.00	0.00	1.28	0.00	5.26	4.35	1.37	0.00	1.47	2.63	1.06	0.00	-1.06	0.839244	1.000000
K	alternative_acceptor	CASP1	chr11	-	chr11:104905116-104905833;chr11:104905430-104905833	chr11:104905202-104905833		chr11:104905116-104905201;chr11:104905202-104905429	chr11:104905115-104905116;chr11:104905201-104905202		76.52	64.71	74.53	65.22	67.86	NA	83.33	85.78	85.71	85.82	81.40	78.86	80.82	84.75	89.11	83.02	86.36	86.67	NA	83.16	70.00	80.36	70.91	79.00	21.43	80.00	76.81	78.15	77.42	81.75	78.00	75.73	NA	82.19	72.22	80.95	72.76	81.58	8.82	0.281122	0.709013
N	jcn_only_AD	VMO1	chr17	-	chr17:4688955-4689265;chr17:4688955-4689195;chr17:4688955-4710221;chr17:4688955-4689231	chr17:4688955-4689251		chr17:4689196-4689231;chr17:4689232-4689251;chr17:4689252-4689265;chr17:4689266-4710221	chr17:4689231-4689232;chr17:4689251-4689252;chr17:4689265-4689266;chr17:4710221-4710222		41.23	38.65	31.75	29.93	39.30	27.10	30.59	41.18	27.59	20.00	30.95	33.33	35.14	40.38	NA	20.00	46.67	30.00	26.42	30.68	27.78	NA	20.00	NA	24.53	25.00	21.28	20.00	16.22	27.27	50.86	51.23	44.18	33.33	44.12	33.77	32.87	40.78	7.91	0.327252	0.657607
N	alternative_donor	USF1	chr1	-	chr1:161010121-161010365	chr1:161010121-161010315		chr1:161010316-161010365	chr1:161010365-161010366		10.42	14.06	12.87	11.11	10.94	7.69	2.17	3.03	3.66	0.00	2.56	0.00	5.26	4.41	6.35	4.17	5.00	NA	9.76	8.33	6.15	14.29	15.09	18.75	0.00	12.20	14.46	13.04	6.56	8.70	9.68	12.43	6.56	16.28	10.29	13.85	5.91	9.00	3.09	0.518368	0.769075
K	intron_retention	NUDT22	chr11	+	chr11:63997044-63997321				chr11:63997043-63997044;chr11:63997321-63997322		7.89	6.50	16.67	19.23	8.86	2.94	0.00	13.33	0.00	NA	3.57	NA	2.70	0.00	0.00	0.00	0.00	NA	5.00	6.67	6.45	NA	15.62	NA	9.95	4.00	7.81	NA	7.89	10.53	13.04	9.52	7.86	33.33	10.00	9.09	5.75	7.28	1.53	0.864026	1.000000
K	alternative_acceptor	MAP7D1	chr1	+	chr1:36643803-36644019;chr1:36643803-36644071	chr1:36643803-36644046		chr1:36644020-36644046;chr1:36644047-36644071	chr1:36644046-36644047;chr1:36644071-36644072		19.67	37.84	18.03	16.67	31.71	NA	30.43	23.08	26.67	22.50	16.67	38.46	23.91	27.66	28.95	15.52	19.15	13.33	18.75	7.55	11.90	8.70	12.96	26.67	0.00	23.33	22.95	27.78	13.89	18.75	16.00	12.28	18.52	16.00	10.20	13.51	21.33	21.38	0.05	0.744536	0.903518
K	alternative_acceptor	DNM2	chr19	+	chr19:10941055-10941656;chr19:10941055-10943667;chr19:10941055-10941653	chr19:10941055-10942979		chr19:10941654-10941656;chr19:10941657-10942979;chr19:10942980-10943667	chr19:10941656-10941657;chr19:10942979-10942980;chr19:10943667-10943668		4.76	5.08	7.38	2.99	7.89	1.35	3.28	6.56	0.00	5.13	6.45	4.00	2.53	2.94	3.39	1.92	3.08	0.00	1.43	8.04	4.26	1.92	5.83	7.89	7.09	2.33	5.88	7.84	8.86	2.63	5.88	7.50	0.00	7.89	6.06	5.19	2.90	5.32	2.42	0.207411	0.669925
N	cassette	CPVL	chr7	-	chr7:29070376-29111388;chr7:29070376-29105638	chr7:29070376-29103676;chr7:29103851-29105638,chr7:29103851-29111388		chr7:29103677-29103850			94.63	94.78	97.96	95.75	96.58	94.99	97.26	97.62	97.73	97.98	97.93	96.88	96.21	100.00	100.00	95.65	97.07	96.17	96.14	96.59	96.27	96.52	97.29	97.15	96.62	97.89	98.90	98.08	98.00	97.33	97.02	95.70	96.01	97.21	97.14	97.47	96.17	97.32	1.14	0.199047	0.709176
K	cassette	NUBP1	chr16	+	chr16:10846536-10850546	chr16:10846536-10849577;chr16:10849611-10850546		chr16:10849578-10849610			100.00	91.30	100.00	92.31	95.24	NA	100.00	95.83	96.77	97.22	100.00	95.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	89.47	100.00	100.00	100.00	100.00	100.00	93.33	85.71	93.33	94.12	92.86	93.33	100.00	100.00	100.00	100.00	100.00	100.00	94.58	-5.42	0.179776	0.709176
K	alternative_donor	C7orf49	chr7	-	chr7:134852560-134853537;chr7:134852560-134853682;chr7:134852560-134853500	chr7:134852560-134853720		chr7:134853501-134853537;chr7:134853538-134853682;chr7:134853683-134853720	chr7:134853537-134853538;chr7:134853682-134853683;chr7:134853720-134853721		0.00	6.90	9.68	9.09	12.50	1.45	13.51	5.71	2.33	10.00	9.76	10.00	8.33	3.33	0.00	9.09	10.53	17.65	0.00	6.25	7.41	NA	20.00	0.00	9.68	5.71	10.00	5.00	16.67	0.00	2.13	4.44	0.00	6.90	3.85	3.33	7.62	4.52	-3.10	0.330169	0.650093
N	alternative_acceptor	RHOT2	chr16	+	chr16:720774-720891;chr16:720774-720924	chr16:720774-720888		chr16:720889-720891;chr16:720892-720924	chr16:720891-720892;chr16:720924-720925		19.23	40.00	29.63	NA	NA	NA	0.00	0.00	15.38	9.09	7.14	NA	5.88	0.00	13.04	0.00	0.00	NA	NA	12.50	NA	25.00	14.81	14.29	14.29	23.53	26.67	NA	20.00	NA	26.67	33.33	30.00	26.67	27.27	27.27	14.29	15.87	1.58	0.635361	0.862032
N	cassette	COL23A1	chr5	-	chr5:177669130-177672942	chr5:177669130-177669341;chr5:177669396-177672942		chr5:177669342-177669395			87.50	84.38	NA	NA	84.38	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	98.63	100.00	100.00	100.00	NA	100.00	98.39	100.00	86.96	100.00	100.00	100.00	96.49	100.00	100.00	NA	100.00	100.00	96.43	92.86	100.00	100.00	0.00	0.715422	0.899102
K	alternative_first_exon	CAPRIN2,LLPH	chr12	-	chr12:66522894-66531830;chr12:66522894-66524235;chr12:66522894-66524484	chr12:66522894-66531743	chr12:66524236-66524482;chr12:66524485-66524548	chr12:66531744-66531909			80.43	89.16	84.72	79.63	84.71	84.06	84.33	78.12	69.81	54.95	62.60	66.67	81.69	76.14	73.00	41.35	64.57	55.41	87.65	79.01	84.78	60.32	76.60	72.58	83.12	77.61	83.47	67.65	69.93	61.82	72.22	87.10	86.15	63.01	69.01	75.64	85.24	77.87	-7.38	0.000585	0.015511
K	intron_retention	DUSP22	chr6	+	chr6:348842-350821				chr6:348841-348842;chr6:350821-350822		76.92	36.67	58.14	31.25	30.30	40.91	36.36	64.71	54.17	51.52	39.13	62.50	54.55	66.67	58.93	31.82	35.00	50.00	38.46	62.50	31.82	42.86	35.48	53.33	64.29	50.00	55.00	37.50	26.92	47.22	NA	40.62	35.71	40.91	44.44	56.10	37.56	64.71	27.14	0.147027	1.000000
K	intron_retention	HLA-C	chr6	-	chr6:31238109-31238215				chr6:31238108-31238109;chr6:31238215-31238216		100.00	100.00	100.00	100.00	100.00	100.00	95.59	95.63	95.49	90.96	91.03	90.40	96.11	95.44	96.21	94.41	93.63	91.45	93.92	92.13	91.76	94.71	95.78	94.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.82	100.00	100.00	100.00	100.00	98.06	97.81	-0.24	0.972996	1.000000
N	cassette	TIMMDC1	chr3	+	chr3:119217781-119236051;chr3:119217775-119232487;chr3:119217775-119222378;chr3:119217775-119236051	chr3:119217775-119219541,chr3:119217781-119219541;chr3:119219708-119232487,chr3:119219708-119222378,chr3:119219708-119236051		chr3:119219542-119219707			97.87	100.00	98.36	81.82	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	92.86	100.00	98.53	100.00	93.75	100.00	90.00	100.00	96.61	100.00	NA	87.50	96.36	100.00	93.18	100.00	94.59	94.12	100.00	96.67	100.00	97.92	100.00	98.94	-1.06	0.405333	0.720274
N	alternative_donor	IGFLR1	chr19	-	chr19:36232125-36233290;chr19:36232125-36233167;chr19:36232125-36232383	chr19:36232125-36233296		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		84.31	92.25	75.34	93.48	88.80	94.00	90.91	87.50	90.32	97.06	85.96	90.00	88.51	90.00	76.92	90.91	88.41	96.43	92.61	84.91	92.86	92.31	89.11	93.15	92.13	94.59	76.47	85.19	86.18	87.84	95.77	86.92	93.03	88.89	82.76	91.49	92.19	88.75	-3.44	0.361811	0.650093
K	alternative_donor	AURKAIP1	chr1	-	chr1:1310171-1310376;chr1:1310171-1310454	chr1:1310171-1310533		chr1:1310377-1310454;chr1:1310455-1310533	chr1:1310454-1310455;chr1:1310533-1310534		79.49	75.34	79.59	71.43	72.55	67.86	72.09	72.73	78.95	68.42	79.07	77.27	78.87	86.21	77.50	69.23	77.08	83.33	78.21	80.85	79.17	73.08	75.68	64.29	69.57	76.47	80.00	73.68	72.73	75.00	68.09	77.78	77.94	68.42	83.33	79.41	76.64	77.98	1.34	0.532859	0.776719
N	jcn_only_AA	FLYWCH1,RNF40	chr16	+	chr16:2988458-2990032	chr16:2988458-2989828		chr16:2989829-2990032	chr16:2990032-2990033		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	8.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	NEMF	chr14	-	chr14:50251425-50251642	chr14:50251432-50251642		chr14:50251425-50251431	chr14:50251424-50251425		93.75	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	87.50	93.55	100.00	96.97	100.00	100.00	100.00	96.88	-3.12	0.215170	0.671511
N	jcn_only_AA	CDC26	chr9	-	chr9:116035691-116037661	chr9:116035719-116037661		chr9:116035691-116035718	chr9:116035690-116035691		91.30	100.00	88.64	100.00	100.00	100.00	91.30	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	92.86	88.46	100.00	92.31	86.05	85.19	100.00	84.62	84.21	100.00	100.00	100.00	89.47	91.89	100.00	88.57	88.10	85.00	86.96	85.71	90.32	96.16	95.65	-0.50	0.905065	0.968067
N	alternative_acceptor	BCKDK,CYLD	chr16	+	chr16:31123349-31123517;chr16:31123349-31123502	chr16:31123349-31123441		chr16:31123442-31123502;chr16:31123503-31123517	chr16:31123502-31123503;chr16:31123517-31123518		93.10	88.75	97.56	92.31	88.31	88.37	100.00	100.00	94.44	93.62	97.18	89.47	100.00	97.06	94.44	100.00	92.31	84.62	95.65	91.43	90.57	85.19	89.36	100.00	92.75	100.00	95.45	92.50	93.22	88.89	100.00	93.75	90.54	91.18	89.13	79.49	94.20	98.53	4.33	0.376010	0.709013
K	intron_retention	SLC4A2	chr7	+	chr7:150767999-150768158				chr7:150767998-150767999;chr7:150768158-150768159		15.29	37.50	17.65	NA	25.00	NA	0.00	0.93	0.00	0.00	1.61	0.00	1.47	0.00	1.27	0.00	1.75	0.00	NA	12.68	4.55	16.00	27.27	16.67	41.67	10.96	13.41	8.57	7.50	3.70	15.56	23.29	NA	13.33	18.75	16.67	19.48	11.82	-7.66	0.640058	1.000000
N	alternative_donor	AD000671.6,DOHH	chr19	-	chr19:36232130-36233296;chr19:36232130-36233290	chr19:36232130-36233167		chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233290-36233291;chr19:36233296-36233297		9.52	3.16	13.16	0.00	1.47	0.00	1.72	5.88	0.00	0.00	1.96	0.00	5.08	6.25	5.41	0.00	4.08	0.00	1.72	5.88	0.00	2.63	4.13	0.00	0.00	0.00	5.17	5.00	5.88	3.70	2.44	3.64	1.77	4.55	6.90	0.00	1.75	5.88	4.13	0.111225	0.520337
K	jcn_only_AA	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99955990-99956312;chr7:99955990-99956555	chr7:99955990-99956521		chr7:99956313-99956521;chr7:99956522-99956555	chr7:99956521-99956522;chr7:99956555-99956556		0.00	0.00	6.67	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	11.76	20.00	NA	5.88	NA	0.00	0.00	0.00	NA	10.00	NA	0.00	14.29	10.00	13.33	4.55	15.38	0.00	0.00	0.00	0.913040	0.969616
K	intron_retention	LST1	chr6	+	chr6:31555096-31556294				chr6:31555095-31555096;chr6:31556294-31556295		5.88	9.21	15.38	0.69	4.55	1.65	6.54	0.00	4.55	0.00	0.96	2.90	8.13	1.89	7.14	2.94	5.38	1.54	8.56	10.00	10.78	1.33	6.08	1.20	11.14	5.88	8.45	8.00	12.28	11.70	4.55	5.88	5.25	0.60	5.16	2.05	8.35	5.21	-3.13	0.405165	1.000000
K	alternative_first_exon	SLC7A8	chr14	-	chr14:23612414-23623467;chr14:23612414-23624374	chr14:23612414-23634493	chr14:23623468-23623659;chr14:23624375-23624667	chr14:23634494-23634645			85.71	94.44	90.91	NA	90.00	NA	93.92	84.78	84.62	100.00	98.41	100.00	92.95	81.25	NA	94.74	97.18	100.00	NA	81.82	NA	100.00	96.55	NA	100.00	86.67	76.47	NA	100.00	NA	NA	80.00	NA	96.67	98.61	100.00	94.18	84.78	-9.40	0.001446	0.017551
K	intron_retention	ATP5B	chr12	-	chr12:57036616-57037186				chr12:57036615-57036616;chr12:57037186-57037187		2.82	1.20	7.49	2.82	1.61	0.00	0.22	0.00	0.75	0.31	1.20	0.00	0.42	1.23	1.34	0.41	0.44	0.39	4.41	3.43	1.26	4.85	3.32	6.05	0.00	5.03	5.22	2.30	2.79	3.92	5.79	6.18	3.12	3.93	3.64	3.76	0.81	3.12	2.31	0.662513	1.000000
K	intron_retention	CC2D1B	chr1	-	chr1:52821122-52821279				chr1:52821121-52821122;chr1:52821279-52821280		4.76	4.35	8.33	0.00	7.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	8.06	0.00	9.68	10.20	9.80	NA	4.71	9.38	0.00	3.03	4.76	7.58	8.14	3.70	13.73	10.77	11.11	0.00	4.73	4.73	0.608648	1.000000
K	intron_retention		chr11	-	chr11:64084838-64084920				chr11:64084837-64084838;chr11:64084920-64084921		3.37	0.71	4.08	3.66	1.49	1.92	0.46	1.55	2.72	0.00	0.68	0.00	1.46	4.08	2.01	1.16	0.00	0.00	1.09	4.37	2.53	3.09	3.18	1.10	0.00	3.01	2.03	1.27	2.63	2.56	9.03	7.18	4.86	2.40	3.55	1.99	0.90	3.73	2.83	0.115032	1.000000
K	jcn_only_AA	FAM192A	chr16	-	chr16:57201124-57207639	chr16:57206787-57207639					100.00	90.20	90.59	NA	100.00	83.33	91.67	89.41	92.55	93.10	92.55	100.00	89.53	95.89	91.18	95.74	93.20	100.00	100.00	94.44	100.00	95.00	93.62	100.00	100.00	89.74	87.14	100.00	100.00	92.00	95.24	95.24	86.36	86.49	100.00	100.00	90.94	94.84	3.91	0.693837	0.865064
N	cassette	ARRB2	chr17	+	chr17:4619329-4619706;chr17:4614040-4619706	chr17:4619329-4619441,chr17:4614040-4619441;chr17:4619487-4619706		chr17:4619442-4619486			96.02	84.52	92.61	100.00	95.00	NA	98.60	98.78	98.57	97.66	96.76	98.39	99.25	99.19	98.74	98.61	97.96	94.44	100.00	93.46	97.37	92.73	94.44	96.83	100.00	98.68	91.26	96.10	94.71	98.65	98.46	94.17	89.29	94.51	94.22	94.33	98.92	98.57	-0.36	0.481599	0.772079
N	jcn_only_AA		chr7	+	chr7:100482460-100482552;chr7:100482460-100482548	chr7:100482460-100482543		chr7:100482544-100482548;chr7:100482549-100482552	chr7:100482548-100482549;chr7:100482552-100482553		95.31	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	95.33	90.48	100.00	100.00	98.48	100.00	100.00	0.00	0.677890	0.856201
N	cassette	IGFLR1	chr19	-	chr19:36230528-36231924;chr19:36230528-36231280	chr19:36230528-36230610;chr19:36230988-36231280,chr19:36230988-36231924		chr19:36230611-36230987			53.45	37.88	52.05	40.77	46.22	31.14	78.74	80.39	79.17	76.92	82.47	72.97	82.16	70.69	70.09	79.73	81.87	83.72	38.52	49.06	54.36	39.62	41.71	40.91	41.95	65.43	67.71	75.96	63.61	67.21	42.86	62.82	35.31	47.10	48.80	46.32	40.23	59.44	19.21	0.478496	0.771126
K	alternative_acceptor	FIBP	chr11	-	chr11:65653135-65653792	chr11:65653293-65653792		chr11:65653135-65653292	chr11:65653134-65653135		1.64	1.30	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	2.63	4.88	4.00	0.00	1.54	0.00	3.57	3.39	1.33	0.00	0.00	5.13	0.65	0.82	0.17	0.431045	0.740994
N	cassette	BAZ1A	chr14	-	chr14:35255428-35263954	chr14:35255428-35261980;chr14:35262128-35263954		chr14:35261981-35262127			100.00	100.00	100.00	100.00	100.00	98.41	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MEA1	chr6	-	chr6:42980767-42980852				chr6:42980766-42980767;chr6:42980852-42980853		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor		chr8	-	chr8:145650384-145651043;chr8:145650384-145650492	chr8:145650384-145651065		chr8:145650493-145651043;chr8:145651044-145651065	chr8:145651043-145651044;chr8:145651065-145651066		68.18	74.51	64.52	61.54	68.75	85.71	81.82	NA	85.71	90.00	81.25	NA	80.77	NA	NA	78.57	83.33	NA	80.56	73.33	61.54	33.33	65.52	45.45	85.71	55.00	48.15	53.33	72.22	72.73	68.75	60.00	85.71	64.29	66.67	68.75	81.29	68.47	-12.83	0.022817	0.291941
N	alternative_acceptor	SMPD1	chr11	+	chr11:6415272-6415427;chr11:6415272-6415407	chr11:6415272-6415448		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		0.00	0.00	0.00	NA	0.00	NA	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	8.33	0.00	6.25	9.68	4.35	0.00	3.70	3.85	0.00	0.00	0.00	0.846256	0.946146
K	intron_retention	ARPC5L	chr9	+	chr9:127631719-127635970				chr9:127631718-127631719;chr9:127635970-127635971		5.88	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	3.70	0.00	0.00	1.85	12.20	NA	3.23	2.44	0.00	1.59	2.08	8.00	2.38	4.17	2.63	6.06	4.35	0.00	3.46	3.46	0.445010	1.000000
K	intron_retention	MBD4	chr3	-	chr3:129152828-129152904				chr3:129152827-129152828;chr3:129152904-129152905		0.00	0.00	5.71	NA	2.63	NA	0.00	0.00	0.00	0.00	1.52	0.00	1.72	1.89	0.00	0.00	1.16	NA	0.00	3.23	0.00	0.00	6.45	NA	NA	6.15	7.06	4.55	0.93	0.00	0.00	3.19	4.00	5.13	4.55	5.88	0.00	0.94	0.94	0.934287	1.000000
K	alternative_acceptor	SNAP47	chr1	+	chr1:227954785-227968227;chr1:227954785-227958271	chr1:227954785-227963489		chr1:227958272-227963489;chr1:227963490-227968227	chr1:227963489-227963490;chr1:227968227-227968228		5.88	3.70	3.33	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	4.76	NA	0.00	NA	3.57	NA	0.00	0.00	0.00	4.35	0.00	10.00	3.85	7.14	0.00	0.00	0.00	0.620332	0.854460
K	intron_retention		chr2	-	chr2:27535115-27535360				chr2:27535114-27535115;chr2:27535360-27535361		0.00	NA	11.36	NA	0.00	NA	0.00	4.00	0.00	0.00	0.00	0.00	0.98	0.00	1.54	0.00	0.00	0.00	0.00	4.55	4.88	0.00	3.39	0.00	NA	0.00	6.82	0.00	2.67	0.00	0.00	0.00	0.00	2.38	0.00	4.08	0.00	0.00	0.00	0.733274	1.000000
K	jcn_only_AA	COX20	chr1	+	chr1:245005361-245005500	chr1:245005361-245005496		chr1:245005497-245005500	chr1:245005500-245005501		100.00	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	100.00	97.56	96.00	96.23	100.00	100.00	98.46	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.199101	0.663989
K	intron_retention	FLNA	chrX	-	chrX:153577199-153581184				chrX:153577198-153577199;chrX:153581184-153581185		89.76	86.83	88.83	94.75	94.16	92.61	95.45	95.02	100.00	95.41	95.68	94.24	96.05	93.97	95.04	95.97	96.93	95.77	94.32	95.82	94.77	95.02	95.31	96.01	100.00	99.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.60	100.00	95.75	95.42	-0.33	0.890369	1.000000
K	alternative_last_exon	C19orf25	chr19	-	chr19:1475239-1478772,chr19:1478580-1478772,chr19:1475249-1478772;chr19:1461824-1478772	chr19:1475258-1478772,chr19:1475514-1478772	chr19:1461142-1461823	chr19:1474185-1475257			73.17	88.76	59.26	98.15	94.37	100.00	84.91	88.37	83.67	94.74	94.00	90.00	89.83	91.11	90.00	92.45	94.83	93.75	87.38	68.97	92.73	70.59	72.53	72.73	88.61	80.49	77.78	96.88	90.38	97.06	71.43	73.08	91.18	91.11	90.91	91.30	88.69	76.83	-11.86	0.052890	0.242424
K	alternative_last_exon	WTAP	chr6	+	chr6:160169402-160169590;chr6:160169402-160174491	chr6:160169402-160169621	chr6:160174492-160174646	chr6:160169622-160170453			82.47	94.48	79.15	95.58	94.41	99.29	67.12	82.10	81.34	76.19	76.16	74.51	59.49	76.31	79.95	75.36	71.02	62.55	98.57	82.57	94.56	81.42	79.02	71.93	100.00	77.45	75.47	78.16	81.82	81.47	90.13	87.75	98.49	80.16	82.85	73.62	96.48	82.28	-14.20	0.577633	0.716265
N	cassette	NCF2	chr1	-	chr1:183536124-183539914	chr1:183536124-183538276;chr1:183538321-183539914		chr1:183538277-183538320			100.00	89.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.94	100.00	100.00	100.00	99.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.50	100.00	100.00	0.00	0.410581	0.725764
N	alternative_acceptor	AC015688.3,LGALS9	chr17	+	chr17:25965381-25967570;chr17:25965381-25967597	chr17:25965381-25967668		chr17:25967571-25967597;chr17:25967598-25967668	chr17:25967597-25967598;chr17:25967668-25967669		5.20	5.15	0.00	9.52	7.59	5.26	7.12	5.70	7.80	6.42	5.73	5.46	6.02	5.08	5.21	4.30	6.94	3.57	6.38	4.78	9.09	6.56	6.25	3.38	5.41	5.94	4.08	4.55	4.76	3.26	10.66	7.69	11.32	6.72	4.90	5.14	6.20	5.45	-0.75	0.614691	0.853734
K	intron_retention		chr1	+	chr1:79126340-79128388				chr1:79126339-79126340;chr1:79128388-79128389		11.19	2.44	13.51	20.00	21.05	4.17	0.00	6.28	4.63	0.00	0.00	2.79	7.50	7.79	13.14	6.67	10.71	4.00	5.88	11.31	3.85	18.18	4.76	10.50	0.00	16.31	9.52	18.02	0.00	5.42	10.53	9.52	0.00	36.08	16.67	13.47	1.22	10.86	9.64	0.021782	1.000000
K	intron_retention	CLCN7	chr16	-	chr16:1497716-1498355				chr16:1497715-1497716;chr16:1498355-1498356		6.10	1.75	2.08	0.00	3.16	NA	0.00	0.00	0.85	0.00	0.93	0.00	0.94	1.89	2.44	1.43	0.98	0.00	4.88	8.62	2.02	5.17	4.26	9.09	8.45	6.82	5.88	3.64	3.48	3.03	9.21	6.67	5.71	4.55	5.04	4.35	3.31	6.46	3.15	0.784880	1.000000
K	intron_retention	C18orf8	chr18	+	chr18:21110097-21110192				chr18:21110096-21110097;chr18:21110192-21110193		2.70	0.00	2.99	0.00	0.00	0.00	19.23	4.26	2.70	15.00	18.18	0.00	8.00	2.27	0.00	8.11	18.75	0.00	0.00	2.94	0.00	9.76	10.00	6.82	0.00	2.60	5.17	8.70	6.06	0.00	0.98	1.02	2.56	15.15	12.20	7.14	1.28	2.65	1.37	0.957220	1.000000
N	cassette	GPR137B	chr1	+	chr1:236347207-236385090;chr1:236332056-236371349;chr1:236347207-236371349	chr1:236332056-236368425,chr1:236347207-236368425;chr1:236368551-236371349,chr1:236368551-236385090		chr1:236368426-236368550			98.70	100.00	96.52	98.00	100.00	100.00	97.94	97.93	95.04	93.23	97.10	92.08	100.00	100.00	98.51	98.53	97.32	98.33	100.00	100.00	100.00	98.00	100.00	100.00	NA	100.00	99.19	100.00	100.00	99.09	100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	0.00	0.793067	0.936947
N	jcn_only_AA	AD000671.6,U2AF1L4	chr19	-	chr19:36235148-36235223;chr19:36235124-36235223	chr19:36235047-36235223		chr19:36235047-36235123;chr19:36235124-36235147	chr19:36235046-36235047;chr19:36235123-36235124		94.74	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	93.33	100.00	100.00	97.62	-2.38	0.182482	0.663989
K	intron_retention		chr17	-	chr17:79872407-79872479				chr17:79872406-79872407;chr17:79872479-79872480		8.70	16.88	14.29	7.69	8.11	NA	4.76	0.00	4.55	0.00	0.00	NA	0.00	5.26	0.00	0.00	0.00	NA	3.57	7.50	15.62	11.76	12.82	18.52	5.88	10.26	12.50	12.50	13.79	16.67	11.86	12.22	6.98	7.89	17.78	13.95	5.32	8.10	2.78	0.886534	1.000000
K	jcn_only_AA	TRA2A	chr7	-	chr7:23545430-23545756	chr7:23545433-23545756		chr7:23545430-23545432	chr7:23545429-23545430		92.45	90.48	88.52	85.19	83.33	84.62	92.11	94.59	97.30	93.15	90.74	94.69	97.96	90.48	95.16	94.74	90.91	95.56	100.00	90.00	93.33	83.56	85.14	85.60	100.00	88.10	90.91	84.93	83.05	80.67	90.00	89.83	93.75	84.00	84.75	80.86	95.85	90.24	-5.61	0.039224	0.663989
N	cassette	SNW1	chr14	-	chr14:78187172-78197330	chr14:78187172-78189523;chr14:78189621-78197330		chr14:78189524-78189620			96.00	77.78	93.55	NA	96.15	NA	100.00	100.00	100.00	96.92	97.01	97.92	98.36	100.00	100.00	94.29	98.25	100.00	NA	90.91	100.00	100.00	98.11	96.00	NA	95.65	90.16	100.00	100.00	100.00	100.00	92.42	70.00	98.08	100.00	100.00	88.07	98.00	9.93	0.253872	0.709176
K	cassette	ATG4B	chr2	+	chr2:242590527-242592926	chr2:242590527-242590678;chr2:242590751-242592926		chr2:242590679-242590750			92.00	100.00	94.59	NA	100.00	NA	100.00	100.00	95.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	89.47	91.67	85.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	NA	80.95	82.50	100.00	96.15	97.06	96.30	100.00	96.00	-4.00	0.105553	0.690484
N	cassette	LPCAT2	chr16	+	chr16:55566795-55571489	chr16:55566795-55568354;chr16:55568390-55571489		chr16:55568355-55568389			100.00	100.00	96.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.75	NA	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	cassette	TXNL4A	chr18	-	chr18:77733857-77748239;chr18:77737702-77748239	chr18:77737702-77746601,chr18:77733857-77746601;chr18:77746751-77748239		chr18:77746602-77746750			4.88	8.75	11.36	5.13	6.98	4.88	6.74	7.69	5.66	5.48	6.00	9.09	6.00	0.00	8.33	4.76	5.77	2.63	10.00	2.56	3.66	9.68	8.89	8.00	2.78	3.57	8.00	4.44	7.81	3.23	9.09	10.34	10.26	8.51	13.21	10.20	7.75	4.22	-3.52	0.151961	0.709176
K	intron_retention	EXOSC1	chr10	-	chr10:99197033-99197456				chr10:99197032-99197033;chr10:99197456-99197457		4.76	0.00	3.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	2.63	0.00	13.33	2.50	0.00	3.33	2.70	5.88	0.00	0.00	0.00	0.594508	1.000000
K	jcn_only_AA	RPS9	chr19	+	chr19:54710331-54711265	chr19:54710331-54710420		chr19:54710421-54711265	chr19:54711265-54711266		7.53	2.33	4.91	3.72	2.40	2.78	1.79	7.07	11.65	3.15	1.43	1.76	0.74	6.81	5.32	3.84	1.89	1.21	1.83	6.10	5.25	5.68	3.03	5.99	2.87	5.08	7.88	3.60	1.40	3.56	7.25	8.45	2.32	3.26	2.09	5.01	2.08	6.94	4.86	0.000003	0.005569
N	cassette	GLRX3	chr10	+	chr10:131969901-131977605	chr10:131969901-131973130;chr10:131973171-131977605		chr10:131973131-131973170			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	ITGB5	chr3	-	chr3:124515665-124536467	chr3:124515665-124527868;chr3:124528004-124536467		chr3:124527869-124528003			90.00	94.20	93.44	100.00	98.48	NA	96.93	94.44	100.00	96.94	94.68	95.33	95.88	98.31	100.00	94.03	93.75	96.09	94.44	93.22	94.44	95.92	94.58	95.52	100.00	94.05	92.75	94.44	95.21	100.00	95.24	97.67	96.08	95.73	93.33	95.07	95.98	94.25	-1.73	0.176677	0.709176
N	alternative_acceptor	TAPBPL	chr12	+	chr12:6570105-6570324;chr12:6570105-6570436;chr12:6570105-6571199	chr12:6570105-6570289		chr12:6570290-6570324;chr12:6570325-6570436;chr12:6570437-6571199	chr12:6570324-6570325;chr12:6570436-6570437;chr12:6571199-6571200		6.67	1.68	4.08	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	1.27	0.00	0.00	0.00	0.77	0.00	0.00	0.00	0.00	0.00	1.85	2.38	0.00	0.00	4.35	2.99	0.00	0.00	0.00	0.406573	0.720290
K	intron_retention	MTMR14	chr3	+	chr3:9731828-9739394				chr3:9731827-9731828;chr3:9739394-9739395		6.25	5.66	3.57	0.00	2.38	8.33	0.00	0.00	0.00	3.12	1.96	0.00	0.00	5.41	3.85	0.00	2.04	0.00	3.57	0.00	0.00	0.00	0.00	9.09	6.67	0.00	5.88	0.00	2.94	0.00	17.65	0.00	0.00	9.09	4.88	9.68	1.78	2.71	0.92	0.936515	1.000000
N	alternative_acceptor	SCYL1	chr11	+	chr11:65303806-65304154;chr11:65303806-65304188;chr11:65303806-65304061	chr11:65303806-65304056		chr11:65304057-65304061;chr11:65304062-65304154;chr11:65304155-65304188	chr11:65304061-65304062;chr11:65304154-65304155;chr11:65304188-65304189		100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.00	100.00	100.00	90.91	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.865087	0.954648
N	alternative_acceptor	NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236068;chr1:41235088-41236383	chr1:41235088-41236380		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		77.27	81.82	77.78	63.16	78.95	80.00	70.97	64.71	68.18	67.50	67.27	57.69	69.05	54.17	69.70	63.04	73.68	70.00	88.89	61.54	83.33	57.89	73.08	59.09	63.64	85.00	77.42	55.56	71.15	67.86	75.86	65.71	76.92	75.76	73.68	71.43	73.94	70.28	-3.66	0.386681	0.709013
K	intron_retention	DAPK3	chr19	-	chr19:3959636-3960056				chr19:3959635-3959636;chr19:3960056-3960057		2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	2.38	0.00	0.00	3.70	0.00	4.55	0.00	0.00	7.55	4.17	6.12	0.00	0.00	0.00	0.00	1.02	1.02	0.838973	1.000000
K	alternative_last_exon	GYG1,VPS8	chr3	+	chr3:148727190-148744546	chr3:148727190-148741839	chr3:148744547-148745455	chr3:148741840-148742059			88.24	86.36	89.66	NA	80.00	NA	92.13	92.86	90.91	86.67	88.31	94.44	94.25	94.29	89.19	90.00	94.37	94.44	NA	97.37	92.86	95.65	90.00	90.48	NA	94.12	90.91	90.48	89.13	92.31	97.06	93.33	70.00	89.36	94.55	93.94	89.25	94.21	4.96	0.228415	0.447213
K	jcn_only_AA	TBC1D2	chr9	-	chr9:100962624-100963760	chr9:100962657-100963760		chr9:100962624-100962656	chr9:100962623-100962624		94.64	93.18	97.67	95.12	99.07	100.00	100.00	97.83	95.83	100.00	100.00	NA	100.00	100.00	100.00	97.78	100.00	NA	98.00	98.21	96.88	100.00	98.01	100.00	100.00	100.00	98.44	98.15	99.36	100.00	96.90	95.45	97.37	98.65	97.37	100.00	99.00	98.02	-0.98	0.908416	0.968555
K	intron_retention		chr1	+	chr1:45271052-45271158				chr1:45271051-45271052;chr1:45271158-45271159		3.23	0.00	3.73	3.68	3.01	2.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	1.42	4.20	4.32	5.69	2.24	0.00	2.01	1.75	0.00	1.64	0.88	6.49	4.30	10.26	4.14	5.41	4.55	0.00	1.71	1.71	0.999601	1.000000
K	jcn_only_AA	UPP1	chr7	+	chr7:48129016-48129784;chr7:48129016-48129105	chr7:48129016-48129846					5.59	0.00	2.96	4.88	3.57	6.67	4.35	5.33	8.70	8.40	4.41	9.41	2.94	2.80	3.77	4.55	4.84	7.27	0.00	2.94	5.43	5.05	7.35	4.85	0.00	0.00	2.33	4.35	6.90	8.77	7.09	4.44	0.00	3.85	7.50	7.61	0.00	4.13	4.13	0.063846	0.663989
N	alternative_donor	PRICKLE4,TOMM6	chr6	+	chr6:41757071-41757268	chr6:41757075-41757268		chr6:41757071-41757074	chr6:41757070-41757071		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	95.45	100.00	98.18	90.91	95.45	96.36	100.00	100.00	96.83	100.00	100.00	100.00	95.00	87.50	100.00	NA	90.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.627066	0.830571
K	alternative_first_exon	NUDC	chr1	+	chr1:27248984-27250579;chr1:27237727-27250579	chr1:27248421-27250579	chr1:27237619-27237726	chr1:27248217-27248420			100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	98.85	100.00	100.00	100.00	94.55	100.00	100.00	100.00	96.97	97.83	100.00	100.00	100.00	98.11	100.00	100.00	0.00	0.801938	0.865357
K	coord_cassette	HDAC6	chrX	+	chrX:48682196-48682953	chrX:48682196-48682331;chrX:48682479-48682575;chrX:48682705-48682953		chrX:48682332-48682478;chrX:48682576-48682704			88.00	100.00	100.00	NA	84.62	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	90.91	100.00	95.65	85.00	100.00	100.00	94.12	100.00	100.00	90.00	100.00	93.75	83.33	100.00	92.86	100.00	100.00	100.00	0.00	0.854236	0.949148
K	intron_retention	ZFAND2A	chr7	-	chr7:1192861-1195088				chr7:1192860-1192861;chr7:1195088-1195089		5.36	8.82	4.26	4.21	3.70	5.84	0.00	2.44	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	5.77	7.89	5.26	3.85	4.88	7.14	3.12	1.75	2.44	4.17	2.78	3.61	5.75	5.48	4.49	4.17	3.57	7.69	3.81	3.90	0.10	0.582434	1.000000
K	alternative_first_exon	SLC7A8	chr14	-	chr14:23612414-23634493;chr14:23612414-23624374	chr14:23612414-23623467	chr14:23634494-23634645;chr14:23624375-23624667	chr14:23623468-23623659			9.52	5.56	0.00	NA	10.00	NA	4.05	13.04	7.69	0.00	1.06	0.00	5.29	14.58	NA	2.63	2.26	0.00	NA	13.64	NA	0.00	3.45	NA	0.00	6.67	11.76	NA	0.00	NA	NA	10.00	NA	0.00	1.39	0.00	4.67	13.04	8.37	0.005423	0.037949
K	alternative_donor	PPCS	chr1	+	chr1:42924977-42925273;chr1:42923022-42925273	chr1:42923239-42925273		chr1:42923022-42923238;chr1:42923239-42924976	chr1:42923021-42923022;chr1:42923238-42923239		0.00	0.00	5.26	NA	0.00	NA	0.00	4.08	4.76	8.70	5.88	0.00	2.63	4.65	6.56	2.50	4.69	0.00	0.00	2.86	0.00	7.14	6.98	7.14	0.00	4.76	4.55	9.09	4.65	0.00	0.00	1.72	0.00	3.70	6.56	7.50	0.00	3.47	3.47	0.055935	0.418548
K	cassette	MAPK3	chr16	-	chr16:30128325-30128990	chr16:30128325-30128457;chr16:30128607-30128990		chr16:30128458-30128606			84.62	75.00	96.43	NA	80.00	NA	100.00	100.00	95.83	100.00	93.94	100.00	100.00	100.00	100.00	NA	100.00	NA	75.00	73.33	88.24	NA	77.27	84.62	NA	85.71	93.75	NA	89.47	NA	NA	81.25	61.54	84.62	70.00	87.50	75.00	85.71	10.71	0.506243	0.788365
N	alternative_donor	RP11-613M10.8,TOMM5	chr9	-	chr9:37588930-37592249;chr9:37588930-37592306;chr9:37588930-37592412;chr9:37588930-37592287	chr9:37588930-37592408		chr9:37592250-37592287;chr9:37592288-37592306;chr9:37592307-37592408;chr9:37592409-37592412	chr9:37592287-37592288;chr9:37592306-37592307;chr9:37592408-37592409;chr9:37592412-37592413		92.86	100.00	100.00	100.00	96.00	100.00	100.00	100.00	97.04	97.67	97.33	98.28	100.00	100.00	97.51	96.25	97.14	97.18	100.00	100.00	96.08	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	0.00	0.373901	0.650093
N	cassette	TNFSF13	chr17	+	chr17:7462615-7463365	chr17:7462615-7463167;chr17:7463211-7463365		chr17:7463168-7463210			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	intron_retention	MTA2	chr11	-	chr11:62361513-62361730				chr11:62361512-62361513;chr11:62361730-62361731		6.35	1.71	3.66	1.75	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.06	4.41	3.26	1.92	3.96	0.00	0.00	0.00	1.12	0.00	0.00	0.00	6.76	8.40	6.82	0.00	1.94	0.00	0.85	2.21	1.35	0.796732	1.000000
N	alternative_donor	P3H1	chr1	-	chr1:43212524-43212923;chr1:43212524-43212741	chr1:43212524-43212942		chr1:43212742-43212923;chr1:43212924-43212942	chr1:43212923-43212924;chr1:43212942-43212943		81.48	88.57	83.33	90.91	83.78	72.22	88.24	NA	68.75	90.00	86.96	NA	81.82	NA	77.78	90.91	76.92	NA	82.86	82.35	78.57	66.67	76.92	NA	83.33	83.33	74.07	80.00	80.77	71.43	90.91	91.67	88.52	100.00	87.50	83.33	85.78	82.84	-2.94	0.697518	0.871606
K	intron_retention	LAIR1	chr19	-	chr19:54868229-54868536				chr19:54868228-54868229;chr19:54868536-54868537		3.78	2.26	5.81	13.89	8.65	13.33	1.54	1.65	1.08	1.33	1.30	1.35	2.41	1.68	2.22	1.45	1.26	3.70	11.90	3.00	6.67	3.70	5.41	6.33	17.07	4.10	4.59	6.06	5.58	7.98	3.90	2.74	4.88	5.84	4.33	5.56	3.65	3.39	-0.26	0.800642	1.000000
K	intron_retention		chr1	-	chr1:201435307-201437468				chr1:201435306-201435307;chr1:201437468-201437469		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.79	6.25	0.88	0.00	2.56	NA	0.00	0.00	0.00	NA	0.00	NA	7.41	3.12	2.63	3.45	1.67	5.00	0.00	0.00	0.00	0.657633	1.000000
K	intron_retention		chr16	+	chr16:28601764-28601951				chr16:28601763-28601764;chr16:28601951-28601952		3.70	0.00	0.00	10.53	3.57	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	8.33	9.09	4.76	0.00	0.00	0.00	NA	0.00	0.00	2.94	8.00	NA	2.38	NA	7.14	7.69	0.00	0.00	0.00	0.837038	1.000000
K	intron_retention		chr7	+	chr7:99997236-99997445				chr7:99997235-99997236;chr7:99997445-99997446		79.59	82.01	85.39	83.91	80.58	83.33	83.15	85.48	83.05	68.06	66.67	66.13	82.76	82.38	82.35	74.32	70.73	59.09	73.51	71.00	70.55	69.74	74.55	73.42	84.24	86.35	82.16	73.00	75.00	73.60	70.78	73.74	76.88	82.28	84.38	78.36	82.39	80.98	-1.40	0.780696	1.000000
K	intron_retention	SIGLEC1	chr20	-	chr20:3670912-3671986				chr20:3670911-3670912;chr20:3671986-3671987		4.74	13.86	2.33	25.00	18.75	18.67	0.39	0.77	1.44	4.62	1.61	3.23	0.87	0.80	0.98	2.67	1.59	3.23	21.95	6.81	13.95	13.64	11.67	17.82	18.10	2.72	8.60	8.75	6.41	12.29	5.17	7.00	17.07	9.62	4.88	7.96	15.46	3.73	-11.73	0.504280	1.000000
N	cassette	TPRA1	chr3	-	chr3:127295540-127298582;chr3:127295540-127295832	chr3:127295540-127295663;chr3:127295737-127298582,chr3:127295737-127295832		chr3:127295664-127295736			94.59	100.00	100.00	88.37	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	98.37	100.00	100.00	100.00	94.29	100.00	90.82	85.86	93.24	100.00	100.00	100.00	96.15	100.00	95.83	93.94	91.43	100.00	93.42	90.36	94.93	100.00	97.30	-2.70	0.124625	0.709176
K	intron_retention	CIC	chr19	+	chr19:42798242-42798324				chr19:42798241-42798242;chr19:42798324-42798325		1.89	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.33	0.00	0.00	0.00	5.13	5.36	14.29	2.94	0.00	0.00	0.00	0.00	0.00	0.826301	1.000000
K	cassette	CDC123	chr10	+	chr10:12277123-12280455	chr10:12277123-12279142;chr10:12279266-12280455		chr10:12279143-12279265			100.00	100.00	100.00	95.83	98.33	NA	96.67	100.00	97.44	98.59	98.86	100.00	100.00	94.44	97.67	97.44	98.13	100.00	100.00	100.00	97.73	100.00	98.36	100.00	NA	100.00	100.00	97.73	100.00	100.00	100.00	98.08	100.00	96.67	97.01	97.14	100.00	100.00	0.00	0.824643	0.941968
K	alternative_last_exon	C21orf33,CH507-9B2.3,CH507-9B2.4	chr21	+	chr21:45560225-45561045,chr21:45560225-45617053;chr21:45560225-45602117;chr21:45560225-45563086	chr21:45560225-45560823	chr21:45602118-45602168;chr21:45563087-45563243	chr21:45560824-45561299			18.18	13.70	11.11	43.75	22.22	60.71	6.90	16.67	10.00	19.05	10.00	18.18	7.69	20.00	10.81	15.79	13.24	NA	30.23	NA	31.91	20.00	7.69	NA	35.00	18.18	6.45	17.39	11.90	35.71	18.18	16.67	27.08	9.52	9.09	23.08	20.39	18.18	-2.21	0.725254	0.828356
K	jcn_only_AA	CFP	chrX	-	chrX:47489045-47489167	chrX:47489074-47489167		chrX:47489045-47489073	chrX:47489044-47489045		NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.30	100.00	NA	100.00	NA	100.00	NA	100.00	96.77	89.47	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	RP11-203M5.8	chr14	-	chr14:20943254-20945062				chr14:20943253-20943254;chr14:20945062-20945063		90.23	91.87	90.10	88.19	87.16	85.57	89.66	90.16	90.14	86.23	84.72	85.80	92.73	89.66	100.00	90.58	82.78	81.02	92.75	97.40	96.46	93.94	95.14	93.07	81.58	92.47	89.50	93.87	90.05	91.61	98.18	96.49	89.55	87.14	90.78	90.10	90.77	91.35	0.58	0.575677	1.000000
N	cassette	MGRN1	chr16	+	chr16:4718314-4723498	chr16:4718314-4721391;chr16:4721461-4723498		chr16:4721392-4721460			100.00	100.00	100.00	NA	NA	NA	100.00	94.87	98.36	100.00	100.00	100.00	100.00	97.56	94.55	100.00	100.00	100.00	NA	96.43	NA	100.00	92.11	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	NA	97.14	100.00	98.18	100.00	98.78	-1.22	0.094241	0.658231
N	intron_retention		chr12	-	chr12:57638150-57638698				chr12:57638149-57638150;chr12:57638698-57638699		53.85	47.62	NA	NA	41.67	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	35.71	37.50	NA	NA	23.08	NA	34.62	60.00	27.27	NA	NA	NA	35.29	NA	19.05	NA	30.00	NA	35.16	45.67	10.51	0.438857	1.000000
K	intron_retention	TRPV2	chr17	+	chr17:16329584-16330035				chr17:16329583-16329584;chr17:16330035-16330036		0.00	0.00	7.14	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	NA	0.95	3.23	0.00	2.13	0.00	2.04	0.00	0.00	3.41	1.69	1.18	0.00	0.00	0.00	0.594508	1.000000
K	alternative_acceptor	ADCY7	chr16	+	chr16:50335126-50338270	chr16:50335126-50335578		chr16:50335579-50338270	chr16:50338270-50338271		2.86	13.04	NA	NA	0.00	NA	0.98	1.67	0.00	0.00	2.20	0.00	2.36	1.87	3.45	5.88	2.27	2.00	NA	3.57	NA	NA	6.25	5.56	11.76	5.77	NA	NA	8.00	7.69	9.09	10.00	9.09	11.11	6.06	4.76	9.09	3.21	-5.88	0.270324	0.709013
K	intron_retention	MYL6	chr12	+	chr12:56556424-56556638				chr12:56556423-56556424;chr12:56556638-56556639		100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.25	84.62	100.00	100.00	100.00	100.00	0.00	0.933812	1.000000
N	jcn_only_AA	MFSD11	chr17	+	chr17:74772624-74774282;chr17:74772624-74777122;chr17:74772624-74774301	chr17:74772624-74774269		chr17:74774270-74774282;chr17:74774283-74774301;chr17:74774302-74777122	chr17:74774282-74774283;chr17:74774301-74774302;chr17:74777122-74777123		100.00	91.89	98.61	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	98.18	93.62	100.00	100.00	100.00	92.16	95.65	100.00	97.30	100.00	97.30	100.00	99.09	-0.91	0.739149	0.883015
N	alternative_acceptor	EMILIN1	chr2	+	chr2:27308166-27308545	chr2:27308166-27308251		chr2:27308252-27308545	chr2:27308545-27308546		0.00	6.67	3.03	7.69	5.88	NA	0.00	4.00	4.00	0.00	3.85	0.00	NA	NA	NA	NA	NA	NA	4.76	0.00	1.69	10.00	20.00	NA	NA	NA	3.85	5.26	NA	NA	0.00	0.00	0.00	0.00	NA	NA	2.38	0.00	-2.38	0.389785	0.709013
K	alternative_acceptor	UROD	chr1	+	chr1:45477958-45478578	chr1:45477958-45478528		chr1:45478529-45478578	chr1:45478578-45478579		12.50	9.09	14.29	NA	6.67	NA	4.55	17.65	27.59	11.54	12.20	5.26	6.98	21.43	34.38	8.33	9.09	4.00	14.29	16.67	20.83	11.11	11.63	0.00	0.00	15.38	8.70	0.00	6.45	0.00	22.22	33.33	NA	13.64	19.23	10.00	6.98	17.16	10.18	0.006821	0.405868
N	cassette	SASH3	chrX	+	chrX:128925058-128926602;chrX:128925058-128926964	chrX:128925058-128926303;chrX:128926453-128926602,chrX:128926453-128926964		chrX:128926304-128926452			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	98.61	NA	100.00	NA	94.74	100.00	100.00	100.00	98.11	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	HDGF	chr1	-	chr1:156714957-156715088;chr1:156714919-156715088	chr1:156714939-156715088		chr1:156714919-156714938;chr1:156714939-156714956	chr1:156714918-156714919;chr1:156714938-156714939		100.00	100.00	96.55	NA	100.00	NA	98.72	100.00	100.00	100.00	100.00	100.00	98.81	100.00	98.99	100.00	98.77	100.00	100.00	97.56	100.00	97.37	98.53	100.00	95.24	100.00	98.88	100.00	97.83	100.00	95.45	98.63	92.86	97.96	98.85	98.25	98.77	100.00	1.23	0.410798	0.725495
K	intron_retention	FGR	chr1	-	chr1:27941095-27941360				chr1:27941094-27941095;chr1:27941360-27941361		0.00	0.00	3.12	4.88	3.92	0.00	0.00	0.00	0.00	0.92	1.15	0.00	0.00	0.00	0.00	1.01	0.00	0.83	0.00	0.00	3.57	3.06	4.94	2.93	0.00	5.77	0.00	2.37	3.68	2.14	0.00	0.00	0.00	3.72	3.60	2.73	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	GLMP	chr1	-	chr1:156263368-156263808;chr1:156263145-156263808;chr1:156263502-156263808	chr1:156263221-156263808		chr1:156263145-156263220;chr1:156263221-156263367;chr1:156263368-156263501	chr1:156263144-156263145;chr1:156263220-156263221;chr1:156263367-156263368		9.17	5.93	5.48	12.12	6.72	21.74	7.97	6.80	6.85	12.88	12.60	12.42	8.21	8.54	7.58	10.53	9.90	10.83	6.25	5.13	9.33	8.47	9.26	6.76	3.80	4.24	9.09	7.06	9.91	8.62	6.74	5.36	5.48	10.09	8.62	8.61	6.09	6.77	0.68	0.638434	0.862563
N	jcn_only_AA	DGKZ	chr11	+	chr11:46400051-46400224;chr11:46400051-46400546;chr11:46400051-46400443	chr11:46400051-46400540		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		100.00	100.00	96.49	94.74	93.62	100.00	98.72	100.00	100.00	NA	100.00	NA	100.00	100.00	96.30	100.00	97.73	NA	97.56	97.37	97.14	100.00	95.83	100.00	100.00	93.48	98.63	100.00	98.15	NA	100.00	100.00	100.00	92.00	97.22	100.00	100.00	100.00	0.00	0.464982	0.727003
K	intron_retention	EXOSC4	chr8	+	chr8:145133803-145134845				chr8:145133802-145133803;chr8:145134845-145134846		2.94	0.00	2.17	4.44	2.00	0.00	6.67	0.00	0.00	3.57	4.17	NA	0.00	0.00	0.00	2.22	0.00	NA	0.00	0.00	3.51	0.00	2.44	NA	0.00	0.00	4.88	4.76	3.33	0.00	5.71	13.51	9.09	5.88	0.00	0.00	0.00	0.00	0.00	0.981791	1.000000
N	cassette	CDC16	chr13	+	chr13:115024874-115028353	chr13:115024874-115027361;chr13:115027424-115028353		chr13:115027362-115027423			80.95	81.82	88.89	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	85.00	93.75	100.00	94.83	100.00	75.00	84.62	93.10	100.00	100.00	100.00	NA	89.29	94.74	89.66	95.35	100.00	97.37	85.00	-12.37	0.771050	0.930939
N	alternative_donor	SART1	chr11	+	chr11:65734787-65734941	chr11:65734855-65734941		chr11:65734787-65734854	chr11:65734786-65734787		100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	94.29	96.67	100.00	100.00	100.00	100.00	100.00	0.00	0.980527	0.994374
N	jcn_only_AD	CSE1L	chr20	+	chr20:47711501-47712885	chr20:47712738-47712885		chr20:47711501-47712737	chr20:47711500-47711501		0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	10.00	2.17	0.00	2.44	0.00	0.00	0.00	0.00	0.00	3.45	4.55	0.00	0.00	0.00	4.35	0.00	6.06	6.67	5.56	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.223346	0.657607
N	jcn_only_AA	METTL9	chr16	+	chr16:21636437-21638265;chr16:21636437-21638267;chr16:21636437-21654396;chr16:21636437-21666547	chr16:21636437-21666550		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		46.02	35.56	46.33	51.52	40.32	50.00	35.87	31.03	40.78	50.00	41.30	32.26	38.24	32.26	31.25	40.38	39.29	35.29	38.89	50.00	38.89	53.85	55.00	57.69	0.00	31.82	51.06	39.39	35.59	35.48	41.82	52.87	47.06	46.43	45.28	40.98	37.05	37.04	-0.02	0.434721	0.703894
N	alternative_acceptor	EIF3B	chr7	+	chr7:2419147-2419913;chr7:2419147-2420049;chr7:2419147-2419918;chr7:2419147-2419838	chr7:2419147-2419815		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		4.55	0.98	2.86	3.21	2.21	2.56	1.85	NA	0.00	1.25	1.85	0.00	0.00	0.00	3.57	1.45	3.45	0.00	1.52	5.00	1.04	2.97	3.70	1.75	0.00	NA	3.57	1.25	2.04	2.25	6.90	2.94	1.23	1.37	1.27	1.56	1.10	4.78	3.67	0.115522	0.605363
N	cassette	SPNS1	chr16	+	chr16:28990793-28993676;chr16:28990793-28994177;chr16:28990793-28993221	chr16:28990793-28992775;chr16:28992937-28994177,chr16:28992937-28993676,chr16:28992937-28993221		chr16:28992776-28992936		chr16:28990726-28990792;chr16:28994178-28994243	100.00	100.00	100.00	100.00	89.58	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	97.33	91.30	100.00	100.00	92.31	97.50	95.16	100.00	100.00	100.00	92.50	93.10	100.00	96.67	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	SAMSN1	chr21	-	chr21:15858436-15870762;chr21:15858436-15861277;chr21:15858436-15870758	chr21:15858436-15868177		chr21:15861278-15868177;chr21:15868178-15870758;chr21:15870759-15870762	chr21:15868177-15868178;chr21:15870758-15870759;chr21:15870762-15870763		0.70	0.00	0.00	0.00	0.00	2.73	0.77	1.00	0.41	0.00	0.00	1.49	0.00	0.78	0.47	0.72	0.00	1.13	0.00	0.00	0.00	0.00	1.65	0.00	0.00	1.05	0.75	0.00	0.00	0.00	1.29	0.00	5.13	0.56	0.00	0.00	0.00	0.89	0.89	0.841482	0.926199
N	alternative_donor	AHNAK	chr11	-	chr11:62259304-62302474;chr11:62259304-62301132	chr11:62259304-62284481		chr11:62284482-62301132;chr11:62301133-62302474	chr11:62301132-62301133;chr11:62302474-62302475		50.00	31.10	78.05	9.59	14.20	3.17	92.72	90.16	NA	91.70	91.71	91.19	91.45	89.04	92.31	91.48	91.84	89.95	17.02	72.41	30.77	76.43	75.49	84.42	24.59	60.38	64.71	78.02	77.18	69.14	34.21	58.82	11.25	78.55	82.18	74.48	27.84	66.39	38.55	0.262242	0.636607
N	jcn_only_AD	SDHC	chr1	+	chr1:161284665-161293403;chr1:161284394-161293403	chr1:161284216-161293403		chr1:161284216-161284393;chr1:161284394-161284664	chr1:161284215-161284216;chr1:161284393-161284394		100.00	100.00	96.36	NA	100.00	NA	98.97	100.00	100.00	97.47	100.00	100.00	100.00	100.00	96.97	99.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	97.44	98.15	100.00	100.00	100.00	100.00	94.59	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.743432	0.866332
K	alternative_donor	PRPF4B	chr6	+	chr6:4062868-4063307	chr6:4062995-4063307		chr6:4062868-4062994	chr6:4062867-4062868		11.11	3.45	15.69	4.00	1.79	1.64	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3.92	23.53	5.00	21.43	8.33	25.00	0.00	16.00	10.53	0.00	4.35	10.00	15.38	20.59	3.39	15.38	7.41	33.33	3.42	15.69	12.27	0.008709	0.211749
K	cassette	DCTN2	chr12	-	chr12:57927087-57928838	chr12:57927087-57928074;chr12:57928236-57928838		chr12:57928075-57928235			97.87	100.00	100.00	NA	95.45	NA	100.00	98.18	97.67	100.00	100.00	97.73	98.53	98.21	97.92	97.92	95.59	97.37	100.00	100.00	96.67	95.45	94.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	97.30	96.00	94.12	100.00	100.00	95.56	100.00	98.19	-1.81	0.869574	0.954868
N	alternative_acceptor	WDFY4	chr10	+	chr10:50189524-50190764;chr10:50189524-50190734	chr10:50189524-50190553		chr10:50190554-50190734;chr10:50190735-50190764	chr10:50190734-50190735;chr10:50190764-50190765		100.00	91.58	100.00	93.10	100.00	100.00	94.87	95.24	90.91	96.00	93.33	89.47	100.00	100.00	100.00	100.00	92.59	87.50	92.21	100.00	89.87	100.00	89.19	100.00	94.83	94.44	94.59	92.59	91.30	100.00	90.48	90.91	89.29	100.00	94.59	100.00	93.52	97.62	4.10	0.220145	0.671511
N	alternative_acceptor		chr17	+	chr17:80441656-80442144;chr17:80441656-80442133	chr17:80441656-80442688		chr17:80442134-80442144;chr17:80442145-80442688	chr17:80442144-80442145;chr17:80442688-80442689		83.70	86.27	79.53	68.75	87.14	80.00	100.00	94.44	93.02	100.00	94.29	86.67	93.18	87.50	82.26	85.71	94.87	90.00	89.04	85.53	83.90	75.00	82.35	72.22	88.10	78.38	78.76	75.00	81.82	72.92	85.48	85.51	91.36	75.86	79.41	66.67	90.20	85.50	-4.70	0.090485	0.595160
N	alternative_acceptor		chr9	+	chr9:140509453-140509505;chr9:140509453-140509548	chr9:140509453-140509525		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		45.16	59.02	64.00	54.55	65.00	56.82	90.00	88.24	89.47	NA	93.33	NA	91.67	90.48	86.67	NA	93.33	NA	54.78	50.00	71.05	NA	66.67	NA	63.37	57.14	63.64	NA	82.14	66.67	31.82	47.37	55.75	NA	43.75	62.50	61.20	53.57	-7.62	0.489995	0.789800
N	alternative_last_exon		chr18	+	chr18:60242784-60251678	chr18:60242784-60243744	chr18:60251679-60251828	chr18:60243745-60245816			100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	95.52	100.00	97.87	97.50	100.00	90.91	98.11	100.00	100.00	96.30	100.00	94.64	96.15	100.00	98.68	100.00	98.46	100.00	99.06	-0.94	0.813634	0.892387
N	alternative_donor		chr7	+	chr7:44807480-44809053;chr7:44808714-44809053;chr7:44805179-44809053	chr7:44808824-44809053		chr7:44805179-44807479;chr7:44807480-44808713;chr7:44808714-44808823	chr7:44805178-44805179;chr7:44807479-44807480;chr7:44808713-44808714		91.67	90.00	91.57	73.91	90.32	93.94	81.82	69.57	70.83	NA	90.91	NA	91.67	67.57	72.73	70.59	57.14	NA	86.05	81.58	82.43	88.89	70.00	63.16	86.05	94.00	96.15	77.78	72.00	96.00	93.48	89.89	93.94	88.89	92.68	87.18	88.03	86.62	-1.40	0.351127	0.650093
K	intron_retention	CC2D1B	chr1	-	chr1:52822799-52823197				chr1:52822798-52822799;chr1:52823197-52823198		6.00	0.00	8.93	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.50	0.00	4.76	0.00	3.12	0.00	5.63	2.44	0.00	0.00	0.00	5.88	7.14	0.00	5.13	4.35	5.00	0.00	5.75	5.75	0.163546	1.000000
N	jcn_only_AA	INF2	chr14	+	chr14:105179330-105179543	chr14:105179330-105179538		chr14:105179539-105179543	chr14:105179543-105179544		0.00	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	3.64	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	DNAJB12	chr10	-	chr10:74094376-74095591				chr10:74094375-74094376;chr10:74095591-74095592		73.68	35.00	58.54	51.85	55.56	61.22	69.57	70.83	53.57	76.92	52.94	70.59	62.96	71.43	67.86	75.00	72.73	75.00	48.89	63.16	68.97	62.50	58.06	72.22	65.85	65.00	63.64	54.17	70.97	76.19	61.90	57.14	41.67	76.19	57.14	56.67	55.92	67.91	11.99	0.747320	1.000000
N	alternative_donor		chr2	-	chr2:74592369-74592664;chr2:74592369-74592636	chr2:74592369-74592641		chr2:74592637-74592641;chr2:74592642-74592664	chr2:74592641-74592642;chr2:74592664-74592665		97.50	96.67	98.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.39	100.00	95.45	100.00	96.67	92.86	97.92	96.88	100.00	100.00	97.62	96.55	100.00	94.12	97.22	93.33	100.00	96.23	98.04	96.72	100.00	100.00	0.00	0.679206	0.860941
K	cassette	SNX6	chr14	-	chr14:35045049-35055435	chr14:35045049-35050766;chr14:35050807-35055435		chr14:35050767-35050806			85.29	82.86	84.03	85.71	93.75	NA	98.34	98.76	99.03	100.00	100.00	100.00	98.85	98.51	98.86	100.00	97.47	100.00	75.00	83.22	83.33	92.86	90.68	90.98	NA	89.68	94.39	100.00	95.45	93.48	80.28	83.67	73.91	90.24	87.82	89.70	82.86	87.49	4.63	0.598413	0.849488
N	jcn_only_AA		chr2	+	chr2:241508532-241511899	chr2:241508532-241511839		chr2:241511840-241511899	chr2:241511899-241511900		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	97.32	100.00	NA	92.86	NA	100.00	95.65	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	EIF3M	chr11	+	chr11:32605476-32611097;chr11:32605476-32608591;chr11:32605476-32608527;chr11:32605476-32608479	chr11:32605476-32608557		chr11:32608480-32608527;chr11:32608528-32608557;chr11:32608558-32608591;chr11:32608592-32611097	chr11:32608527-32608528;chr11:32608557-32608558;chr11:32608591-32608592;chr11:32611097-32611098		97.14	100.00	100.00	96.77	100.00	NA	100.00	95.00	95.05	96.95	98.06	98.48	94.64	100.00	99.14	98.35	96.26	94.44	100.00	96.97	100.00	99.16	98.29	96.46	NA	100.00	98.36	100.00	96.91	100.00	100.00	100.00	100.00	100.00	97.96	96.59	100.00	98.57	-1.43	0.604482	0.816233
K	intron_retention	PCGF1	chr2	-	chr2:74734012-74734168				chr2:74734011-74734012;chr2:74734168-74734169		30.77	3.85	19.23	NA	5.56	NA	0.00	0.00	5.88	0.00	4.55	NA	0.00	NA	0.00	5.88	0.00	0.00	0.00	20.00	0.00	18.18	9.68	0.00	0.00	NA	12.50	0.00	8.33	0.00	7.14	18.75	0.00	11.76	4.00	5.26	0.00	13.57	13.57	0.343274	1.000000
K	alternative_donor	GET4	chr7	+	chr7:917965-925692;chr7:916438-925692	chr7:924032-925692		chr7:916438-917964;chr7:917965-924031	chr7:916437-916438;chr7:917964-917965		8.00	16.67	12.12	5.00	9.52	NA	0.00	3.85	0.00	0.00	2.17	0.00	2.94	4.76	2.94	2.22	1.85	0.00	6.25	5.26	4.76	5.00	6.52	9.09	11.11	4.17	9.09	3.45	3.70	0.00	5.26	5.71	11.76	4.35	11.54	4.55	8.68	5.01	-3.67	0.309390	0.650093
N	alternative_last_exon	MAX	chr14	-	chr14:65528721-65560425,chr14:65537088-65560425;chr14:65551018-65560425;chr14:65473003-65560425	chr14:65543382-65560425,chr14:65544755-65560425	chr14:65550462-65551017;chr14:65472892-65473002	chr14:65541920-65543381			87.01	79.59	91.11	71.43	81.63	65.96	91.04	87.88	93.65	91.04	90.70	88.00	93.22	88.89	87.50	87.78	92.22	90.16	82.86	85.45	85.29	84.62	91.30	92.00	95.45	94.92	91.43	86.96	90.20	85.33	82.14	85.11	83.78	87.93	91.30	88.31	87.41	87.44	0.03	0.985610	0.988267
N	jcn_only_AA	EIF4A1,RP11-186B7.4,SENP3-EIF4A1	chr17	+	chr17:7480484-7480665;chr17:7480484-7480661	chr17:7480484-7480751		chr17:7480662-7480665;chr17:7480666-7480751	chr17:7480665-7480666;chr17:7480751-7480752		1.81	0.00	0.00	4.66	4.52	6.42	1.14	1.05	1.68	1.93	2.73	2.22	0.00	1.56	2.31	1.56	0.00	0.00	4.27	2.10	2.59	4.31	4.25	4.12	0.00	2.24	0.00	5.26	4.54	3.50	2.18	2.42	2.79	5.20	4.37	4.63	0.57	1.96	1.39	0.569359	0.796382
N	alternative_acceptor	PARVG	chr22	+	chr22:44587985-44588976;chr22:44587985-44589680;chr22:44587985-44588837	chr22:44587985-44589685		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		0.00	0.00	0.00	0.00	3.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	4.76	8.33	4.35	0.00	7.14	0.00	4.88	0.00	4.48	0.00	0.00	0.00	0.00	0.798948	0.925595
N	cassette	CD163	chr12	-	chr12:7632510-7635238;chr12:7632510-7635561;chr12:7632593-7635561;chr12:7632593-7635238	chr12:7632593-7633756,chr12:7632510-7633756;chr12:7633853-7635238,chr12:7633853-7635561		chr12:7633757-7633852			93.68	93.98	96.11	93.01	94.69	94.48	94.19	95.03	94.95	93.13	95.53	92.88	93.30	94.63	96.22	90.67	95.66	94.33	95.99	95.50	95.46	94.79	95.41	95.25	95.62	96.01	95.60	91.47	94.47	93.19	94.61	96.70	94.43	94.37	93.96	94.55	94.31	94.83	0.52	0.555755	0.821548
N	jcn_only_AD	NADSYN1	chr11	+	chr11:71185570-71189440;chr11:71188485-71189440;chr11:71189351-71189440	chr11:71185573-71189440					85.71	100.00	92.31	NA	91.67	NA	100.00	NA	93.75	94.74	100.00	NA	93.94	100.00	90.48	86.67	88.46	NA	NA	86.67	84.21	NA	79.17	92.31	NA	91.67	82.76	NA	72.22	81.82	NA	90.62	100.00	70.59	88.89	81.25	100.00	89.17	-10.83	0.102877	0.643330
K	intron_retention	RP11-24J19.1	chr15	-	chr15:92706150-92715249				chr15:92706149-92706150;chr15:92715249-92715250		100.00	100.00	96.67	100.00	100.00	96.64	100.00	97.56	94.55	94.00	87.50	96.61	100.00	93.55	94.00	100.00	100.00	88.37	92.31	90.48	93.02	96.30	96.77	90.72	100.00	100.00	100.00	83.33	100.00	91.84	100.00	90.70	100.00	100.00	100.00	96.34	100.00	98.78	-1.22	0.878951	1.000000
N	jcn_only_AA	NISCH	chr3	+	chr3:52525530-52525646;chr3:52525530-52525887	chr3:52525530-52525892		chr3:52525647-52525887;chr3:52525888-52525892	chr3:52525887-52525888;chr3:52525892-52525893		0.00	2.67	3.33	NA	3.00	NA	0.00	0.00	5.26	0.00	0.00	NA	1.27	0.00	0.00	0.00	0.00	NA	0.00	3.23	0.00	0.00	2.61	0.00	0.00	0.00	0.00	0.00	4.17	NA	0.00	0.00	3.28	0.00	4.71	0.00	0.64	0.00	-0.64	0.428997	0.698177
N	alternative_acceptor	INF2	chr14	+	chr14:105179330-105179543	chr14:105179330-105179538		chr14:105179539-105179543	chr14:105179543-105179544		0.00	0.00	7.89	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	5.36	0.00	0.00	0.00	0.00	0.363217	0.709013
K	intron_retention	STAT5A	chr17	+	chr17:40453473-40456359				chr17:40453472-40453473;chr17:40456359-40456360		0.00	7.69	3.17	0.00	0.00	6.67	0.00	0.00	0.00	0.00	1.67	0.52	0.00	1.56	0.66	0.00	0.00	1.20	NA	8.00	5.56	2.08	5.26	4.55	0.00	2.38	1.92	0.00	7.41	2.31	3.70	3.51	NA	0.00	2.50	3.33	0.00	1.97	1.97	0.779969	1.000000
N	jcn_only_AD	C3orf62,PARL	chr3	-	chr3:183562115-183580540;chr3:183562115-183580484;chr3:183562115-183595939	chr3:183562115-183574219		chr3:183574220-183580484;chr3:183580485-183580540;chr3:183580541-183595939	chr3:183580484-183580485;chr3:183580540-183580541;chr3:183595939-183595940		0.00	4.35	0.00	0.00	1.75	NA	6.41	0.00	0.00	0.00	3.23	0.00	7.53	NA	4.55	2.00	4.17	0.00	0.00	0.00	0.00	0.00	5.63	0.00	0.00	0.00	3.64	2.94	4.48	0.00	0.00	0.00	0.00	6.52	3.70	0.00	2.17	0.00	-2.17	0.085479	0.632469
N	cassette	C1orf43	chr1	-	chr1:154186423-154192894;chr1:154187051-154192894;chr1:154185101-154192817;chr1:154186423-154192817;chr1:154187051-154192817	chr1:154187051-154192311,chr1:154186423-154192311,chr1:154185101-154192311;chr1:154192414-154192817,chr1:154192414-154192894		chr1:154192312-154192413			63.86	54.84	69.23	63.64	40.54	NA	63.31	66.97	67.19	59.32	57.96	57.55	64.20	67.31	63.64	53.94	50.60	51.55	NA	65.06	66.67	48.84	56.92	57.14	NA	72.22	69.31	61.33	61.90	55.77	68.75	67.27	72.73	54.90	56.00	52.38	63.76	67.14	3.38	0.408100	0.723701
K	intron_retention	BRAT1	chr7	-	chr7:2579277-2579419				chr7:2579276-2579277;chr7:2579419-2579420		0.00	0.00	6.90	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.78	0.00	0.00	NA	5.56	NA	0.00	NA	3.03	0.00	0.00	NA	0.00	3.57	2.27	7.69	0.00	NA	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	C14orf119	chr14	+	chr14:23565160-23566866;chr14:23565231-23566866	chr14:23564829-23566866		chr14:23564829-23565159;chr14:23565160-23565230	chr14:23564828-23564829;chr14:23565159-23565160		93.94	100.00	94.44	100.00	100.00	NA	98.75	95.83	98.55	95.59	96.63	100.00	98.04	95.59	95.89	96.25	97.75	100.00	96.30	97.59	95.65	98.00	97.58	93.75	85.71	94.20	96.15	100.00	98.02	100.00	95.45	93.94	100.00	95.16	94.12	89.66	98.40	95.52	-2.88	0.668493	0.853868
K	intron_retention	C19orf53	chr19	+	chr19:13885389-13885465				chr19:13885388-13885389;chr19:13885465-13885466		5.21	5.59	4.27	0.00	1.63	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.21	6.67	3.83	0.00	3.11	1.89	1.65	3.92	0.73	0.00	0.00	0.00	16.85	8.50	7.73	0.97	3.12	0.97	2.43	4.56	2.13	0.760861	1.000000
N	alternative_acceptor	STARD3	chr17	+	chr17:37814776-37814961;chr17:37814776-37814974	chr17:37814776-37814991		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		0.00	0.00	6.67	NA	9.38	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	5.13	15.00	NA	9.09	0.00	0.00	0.00	0.00	22.73	7.69	16.67	3.57	2.33	0.00	0.00	1.93	1.93	0.610727	0.852860
K	intron_retention	AP5Z1	chr7	+	chr7:4825316-4825880				chr7:4825315-4825316;chr7:4825880-4825881		6.98	6.25	5.56	6.67	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	2.22	1.35	2.38	0.00	0.00	5.56	4.55	5.71	4.84	0.00	13.04	5.00	4.44	3.23	9.09	0.00	13.21	5.26	9.09	12.77	6.52	7.25	4.34	5.28	0.93	0.920154	1.000000
K	intron_retention	SH3GL1	chr19	-	chr19:4361794-4362325				chr19:4361793-4361794;chr19:4362325-4362326		4.62	0.00	4.76	0.00	1.43	NA	0.00	0.00	3.45	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.96	0.00	5.88	1.67	0.00	2.04	3.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	1.45	0.00	2.56	2.11	0.00	0.00	0.83	0.83	0.807718	1.000000
N	alternative_acceptor	NFAT5	chr16	+	chr16:1412322-1412470	chr16:1412322-1412452		chr16:1412453-1412470	chr16:1412470-1412471		94.12	97.30	96.94	95.79	97.02	98.75	95.24	94.52	100.00	94.74	97.59	93.89	94.78	96.36	100.00	98.97	96.03	95.60	97.28	100.00	100.00	100.00	95.88	96.91	100.00	96.67	95.00	92.86	98.41	94.62	95.65	100.00	94.66	97.39	96.49	96.95	96.26	96.00	-0.25	0.793888	0.923537
K	alternative_acceptor	HLA-DRA	chr6	+	chr6:32410471-32411036	chr6:32410471-32410961		chr6:32410962-32411036	chr6:32411036-32411037		94.27	95.39	96.05	93.61	94.11	93.21	96.65	95.86	95.45	95.97	96.46	95.88	95.06	95.50	95.02	94.26	95.37	94.34	96.56	96.18	95.99	95.28	94.79	95.13	97.40	94.77	94.16	95.20	95.79	96.03	100.00	100.00	100.00	93.33	100.00	93.30	96.61	95.68	-0.92	0.513738	0.800638
K	cassette	PSMA3	chr14	+	chr14:58714551-58724462	chr14:58714551-58718841;chr14:58718961-58724462		chr14:58718842-58718960			96.08	100.00	100.00	100.00	94.29	100.00	97.56	100.00	98.18	100.00	97.37	98.73	98.08	98.59	94.67	100.00	98.86	100.00	100.00	94.55	100.00	96.36	100.00	98.67	100.00	100.00	95.35	98.51	98.00	98.28	96.88	97.26	100.00	100.00	100.00	98.29	100.00	97.73	-2.27	0.159481	0.709176
K	cassette	GLMP	chr1	-	chr1:156263001-156263808	chr1:156263001-156263110;chr1:156263221-156263808		chr1:156263111-156263220			85.37	78.42	81.82	83.78	84.91	86.49	93.96	95.00	91.67	93.75	94.44	96.15	93.22	94.44	85.42	92.68	91.89	92.98	81.94	84.44	92.98	86.11	84.87	85.71	83.87	92.54	87.72	89.47	87.50	93.75	91.07	70.73	78.57	83.56	81.52	82.86	82.91	91.81	8.90	0.142856	0.709176
K	intron_retention		chr22	+	chr22:29684776-29687553				chr22:29684775-29684776;chr22:29687553-29687554		34.88	16.67	45.65	15.38	12.90	NA	3.33	3.03	5.00	7.89	2.56	3.23	5.26	6.90	9.68	6.12	4.26	3.03	20.00	25.81	18.18	25.58	30.36	30.36	NA	28.89	34.88	19.23	28.57	15.87	24.00	41.82	16.67	41.82	51.06	42.86	16.67	24.91	8.23	0.221276	1.000000
K	intron_retention	MARCKS	chr6	+	chr6:114182266-114182267				chr6:114182265-114182266;chr6:114182267-114182268		34.78	23.81	31.67	30.51	19.57	33.33	25.86	29.46	27.04	36.46	31.79	35.09	22.68	20.26	19.18	22.40	18.12	19.14	47.62	44.86	13.25	41.18	33.72	31.47	15.79	12.94	14.51	13.64	11.81	10.06	1.72	1.83	0.00	1.15	1.21	1.91	23.24	24.86	1.62	0.997141	1.000000
N	jcn_only_AD	NSMCE2	chr8	+	chr8:126370101-126379009;chr8:126370061-126379009	chr8:126374404-126379009		chr8:126370061-126370100;chr8:126370101-126374403	chr8:126370060-126370061;chr8:126370100-126370101		0.00	0.00	0.00	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.623698	0.814721
K	intron_retention		chr16	-	chr16:2290147-2293046				chr16:2290146-2290147;chr16:2293046-2293047		0.00	1.99	0.00	3.03	2.63	0.00	0.00	NA	2.44	0.00	3.12	0.00	0.00	0.00	2.56	0.00	0.00	0.00	2.12	0.00	1.30	0.00	1.64	0.00	3.06	NA	0.00	0.00	0.00	0.00	0.00	2.94	2.69	6.90	2.63	0.00	2.06	0.00	-2.06	0.385068	1.000000
N	alternative_acceptor	NKAP	chrX	-	chrX:119059358-119063978	chrX:119059380-119063978		chrX:119059358-119059379	chrX:119059357-119059358		3.45	1.79	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	2.70	0.00	6.98	0.00	3.03	0.00	0.00	0.00	3.23	0.00	2.08	0.00	3.03	0.00	1.94	0.00	-1.94	0.416876	0.731630
K	intron_retention	ABCC3	chr17	+	chr17:48755581-48757158				chr17:48755580-48755581;chr17:48757158-48757159		22.58	25.00	23.85	NA	25.00	NA	2.78	0.00	NA	0.00	5.41	0.00	9.09	NA	13.33	0.00	11.11	NA	18.18	17.65	18.52	0.00	13.24	4.17	43.75	33.33	29.55	7.14	17.07	0.00	22.22	26.03	0.00	11.11	29.17	3.45	13.63	22.22	8.58	0.983350	1.000000
K	intron_retention	EIF3B	chr7	+	chr7:2418878-2419028				chr7:2418877-2418878;chr7:2419028-2419029		0.00	0.81	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.68	4.35	0.38	0.00	0.00	0.00	0.19	0.00	-0.19	0.703892	1.000000
N	alternative_acceptor	PXN	chr12	-	chr12:120650384-120651644	chr12:120650438-120651644		chr12:120650384-120650437	chr12:120650383-120650384		0.00	10.00	0.00	NA	NA	NA	1.45	0.00	3.28	0.00	2.38	NA	5.00	0.00	8.82	2.70	3.64	NA	NA	0.00	NA	0.00	5.00	0.00	0.00	0.00	1.67	0.00	4.35	NA	0.00	2.22	NA	0.00	2.94	0.00	3.23	0.00	-3.23	0.161806	0.660713
K	intron_retention	AP5Z1	chr7	+	chr7:4827926-4828470				chr7:4827925-4827926;chr7:4828470-4828471		2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	3.57	0.00	0.00	2.17	0.00	0.00	0.00	2.04	1.67	3.33	6.98	3.23	0.00	0.00	0.00	0.00	0.843845	1.000000
K	cassette	TRIM22	chr11	+	chr11:5717886-5719544	chr11:5717886-5718477;chr11:5718574-5719544		chr11:5718478-5718573			96.95	100.00	96.30	100.00	100.00	97.89	98.73	98.82	96.35	96.43	97.26	96.85	98.96	98.50	97.01	100.00	100.00	98.26	100.00	97.79	93.33	100.00	100.00	98.80	100.00	98.54	100.00	100.00	100.00	98.20	100.00	98.88	91.67	100.00	100.00	98.97	99.48	98.52	-0.96	0.887165	0.966627
K	cassette	SREBF1	chr17	-	chr17:17716166-17716882	chr17:17716166-17716681;chr17:17716794-17716882		chr17:17716682-17716793			100.00	100.00	100.00	100.00	90.48	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.00	NA	100.00	100.00	100.00	100.00	100.00	NA	95.83	96.55	93.94	100.00	100.00	100.00	100.00	100.00	0.00	0.982730	0.995298
K	intron_retention		chr6	-	chr6:109768433-109768559				chr6:109768432-109768433;chr6:109768559-109768560		5.36	5.77	5.26	0.00	6.90	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	4.76	13.04	6.25	0.00	1.27	4.55	0.00	3.57	0.00	5.56	6.25	3.70	5.56	3.64	2.50	0.00	1.59	1.59	0.708994	1.000000
K	intron_retention		chr12	+	chr12:58109754-58109874				chr12:58109753-58109754;chr12:58109874-58109875		9.73	9.09	10.41	5.56	5.26	7.14	0.00	0.34	0.76	0.00	0.35	0.00	1.08	0.63	1.56	1.16	0.39	0.00	7.69	8.94	5.21	6.45	8.82	7.75	0.00	6.50	5.97	5.50	5.88	5.69	10.34	13.00	10.00	7.97	9.03	10.13	4.38	7.72	3.33	0.829775	1.000000
N	alternative_acceptor	STRN4	chr19	-	chr19:47224029-47225242	chr19:47224062-47225242		chr19:47224029-47224061	chr19:47224028-47224029		1.56	6.12	1.41	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	1.61	2.56	0.00	2.00	2.78	0.00	0.00	0.00	1.96	1.49	0.00	0.00	0.00	0.00	0.00	1.76	1.76	0.796708	0.925103
K	intron_retention	SUN2	chr22	-	chr22:39137577-39138305				chr22:39137576-39137577;chr22:39138305-39138306		20.93	17.78	9.68	NA	30.00	80.95	0.00	9.09	7.04	0.00	0.00	14.81	0.00	8.25	14.75	4.35	0.00	23.81	NA	21.95	29.17	14.29	6.00	36.59	NA	32.35	13.11	44.12	16.00	79.55	55.26	19.18	25.00	18.00	6.98	43.48	8.89	21.44	12.55	0.299016	1.000000
K	intron_retention		chr2	+	chr2:220370278-220370436				chr2:220370277-220370278;chr2:220370436-220370437		10.00	3.95	9.38	8.00	7.69	16.67	0.00	0.00	0.00	6.25	3.12	11.76	3.03	0.00	5.71	5.26	7.14	12.50	4.11	4.17	6.90	20.00	12.82	16.67	6.76	0.00	8.82	9.09	11.43	12.73	15.62	16.22	9.86	10.00	10.71	13.64	4.03	2.08	-1.95	0.988301	1.000000
K	intron_retention	ZFAS1	chr20	+	chr20:47897502-47905581				chr20:47897501-47897502;chr20:47905581-47905582		10.11	5.14	5.21	9.47	3.85	8.27	0.00	0.00	0.56	4.08	0.00	2.86	2.00	1.82	1.12	4.13	3.77	6.67	7.75	11.11	7.43	8.14	7.69	13.54	2.64	4.38	4.76	13.58	4.59	8.61	7.77	7.69	9.14	13.68	15.69	15.83	3.89	6.07	2.18	0.742475	1.000000
K	intron_retention	DENND2D	chr1	-	chr1:111730993-111731323				chr1:111730992-111730993;chr1:111731323-111731324		8.77	7.14	5.13	6.90	0.00	0.00	0.00	1.59	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	8.33	0.00	5.36	NA	10.64	0.00	3.08	4.35	2.36	2.78	0.00	0.00	3.03	0.00	3.73	0.00	2.95	2.95	0.359504	1.000000
N	alternative_acceptor	ACAA1	chr3	-	chr3:38167833-38168000	chr3:38167844-38168000		chr3:38167833-38167843	chr3:38167832-38167833		37.50	40.91	42.86	36.84	38.71	NA	4.48	4.88	2.70	0.00	2.44	0.00	6.98	5.26	3.12	0.00	4.76	0.00	33.33	38.10	15.19	NA	40.74	46.15	39.13	30.77	32.14	26.09	25.00	26.92	38.24	41.67	28.57	26.67	42.86	38.89	30.95	34.13	3.18	0.981215	0.994765
N	jcn_only_AD	FBXW5	chr9	-	chr9:139836137-139837800;chr9:139836137-139836497;chr9:139836137-139836206	chr9:139836137-139836551					9.80	0.00	10.84	11.11	2.56	0.00	8.00	8.89	9.57	6.52	4.24	3.64	9.09	15.58	6.60	6.17	3.97	6.38	0.00	11.11	4.65	9.09	0.00	7.69	5.26	4.76	7.58	4.88	7.55	2.44	10.29	10.64	8.82	2.78	9.09	6.25	6.63	10.04	3.42	0.056007	0.535425
N	alternative_acceptor		chr21	+	chr21:45811509-45815302	chr21:45811509-45815296		chr21:45815297-45815302	chr21:45815302-45815303		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	100.00	NA	97.14	100.00	NA	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	91.67	100.00	100.00	0.00	0.391002	0.709013
N	alternative_donor	SUMF2	chr7	+	chr7:56142446-56144526;chr7:56142430-56144526	chr7:56142333-56144526		chr7:56142333-56142429;chr7:56142430-56142445	chr7:56142332-56142333;chr7:56142429-56142430		0.00	2.63	0.00	10.00	3.57	NA	3.23	8.33	3.17	8.16	3.66	10.53	3.19	0.00	4.11	1.96	1.61	7.14	0.00	4.55	0.00	9.38	8.16	2.44	7.41	6.67	2.94	8.33	7.89	6.67	4.35	6.67	12.00	7.69	9.09	4.88	3.21	4.45	1.24	0.741099	0.891105
K	jcn_only_AD	KXD1	chr19	+	chr19:18668725-18672845	chr19:18668760-18672845		chr19:18668725-18668759	chr19:18668724-18668725		3.03	0.00	0.00	0.00	0.00	NA	0.00	0.00	9.52	2.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.23	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.363217	0.657607
K	alternative_donor	ARSA	chr22	-	chr22:51066221-51066418;chr22:51066221-51066325	chr22:51066221-51066373		chr22:51066326-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		61.54	71.88	60.78	NA	63.16	NA	65.71	66.27	65.38	64.71	65.96	64.44	61.54	61.90	65.00	60.71	57.58	56.52	NA	65.62	68.18	66.67	64.15	72.41	69.57	67.61	64.91	75.00	65.79	66.67	75.86	71.79	61.54	58.06	77.42	71.70	65.71	65.94	0.23	0.891347	0.977754
K	intron_retention		chr8	+	chr8:20083331-20083949				chr8:20083330-20083331;chr8:20083949-20083950		15.79	7.23	7.27	8.70	6.82	10.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4.84	7.14	2.22	9.76	5.56	16.67	1.75	19.05	6.98	10.53	7.14	10.00	12.00	9.30	5.80	15.52	13.95	16.67	5.32	13.89	8.57	0.133011	1.000000
K	alternative_donor	ARHGAP9	chr12	-	chr12:57869399-57869615	chr12:57869399-57869558		chr12:57869559-57869615	chr12:57869615-57869616		10.00	8.62	11.43	NA	4.76	NA	4.00	0.00	NA	0.00	0.00	NA	1.11	NA	NA	NA	1.59	NA	7.14	5.26	0.00	NA	6.25	NA	15.79	0.00	10.00	NA	12.00	NA	NA	12.50	8.33	8.33	8.70	0.00	7.73	2.63	-5.10	0.281797	0.650093
N	alternative_acceptor	BET1L	chr11	-	chr11:201777-205610;chr11:201226-205610;chr11:201742-205610	chr11:205470-205610		chr11:201226-201741;chr11:201742-201776;chr11:201777-205469	chr11:201225-201226;chr11:201741-201742;chr11:201776-201777		85.71	74.42	94.87	80.00	83.78	82.14	96.67	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	74.07	94.44	84.62	93.75	85.71	100.00	100.00	87.50	92.11	100.00	100.00	95.00	84.21	100.00	57.14	87.50	92.59	100.00	85.55	90.97	5.42	0.376125	0.709013
N	cassette	PFKL	chr21	+	chr21:45733566-45736126	chr21:45733566-45733795;chr21:45733905-45736126		chr21:45733796-45733904			100.00	87.50	100.00	NA	92.31	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	94.23	100.00	96.77	100.00	100.00	96.55	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.340499	0.709176
K	intron_retention	BABAM1,CTD-2278I10.6	chr19	+	chr19:17387434-17387631				chr19:17387433-17387434;chr19:17387631-17387632		0.00	2.26	4.39	3.12	1.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	2.08	0.00	2.13	3.33	1.06	0.00	6.25	3.92	5.05	0.00	1.20	2.38	5.66	1.83	1.75	1.56	3.75	0.00	1.92	0.00	-1.92	0.960611	1.000000
N	alternative_acceptor	RGS19	chr20	-	chr20:62705895-62707877	chr20:62705937-62707877		chr20:62705895-62705936	chr20:62705894-62705895		0.00	2.99	0.00	NA	1.79	NA	0.00	0.00	0.00	0.00	0.00	NA	0.94	0.00	0.00	0.00	0.68	NA	0.00	5.00	0.00	0.00	2.41	NA	0.00	0.00	0.00	0.00	1.22	NA	4.55	2.86	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.430381	0.740994
K	cassette	SPTAN1	chr9	+	chr9:131353905-131356453	chr9:131353905-131355261;chr9:131355322-131356453		chr9:131355262-131355321			40.62	17.65	43.80	NA	NA	NA	69.05	37.62	54.29	78.57	76.27	77.42	67.74	49.15	59.78	71.43	75.93	85.71	NA	26.32	53.85	80.00	69.57	84.62	80.00	36.00	51.76	NA	85.00	NA	NA	54.55	NA	60.00	66.67	65.52	68.39	37.62	-30.77	0.236081	0.709176
K	jcn_only_AA	TSC2	chr16	+	chr16:2136381-2136767	chr16:2136381-2136732		chr16:2136733-2136767	chr16:2136767-2136768		100.00	100.00	97.22	100.00	96.43	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	93.22	92.31	100.00	95.45	100.00	100.00	100.00	0.00	0.363217	0.663989
K	coord_cassette	DGUOK	chr2	+	chr2:74174034-74185272	chr2:74174034-74177753;chr2:74177860-74184251;chr2:74184368-74185272		chr2:74177754-74177859;chr2:74184252-74184367			17.11	22.48	17.76	30.43	30.28	22.06	30.30	33.33	23.91	26.67	31.03	28.57	32.56	29.41	26.53	38.10	30.00	20.00	17.65	20.37	19.23	39.13	29.63	23.81	22.00	21.43	25.00	47.62	38.30	40.00	12.73	16.33	19.81	30.95	24.53	25.00	22.24	20.90	-1.34	0.671453	0.834779
K	alternative_first_exon	HNRNPUL1	chr19	+	chr19:41770599-41811580	chr19:41810167-41811580	chr19:41770363-41770598	chr19:41809877-41810166			82.61	66.67	81.65	NA	96.00	NA	72.93	80.00	78.03	79.49	78.11	77.63	70.00	76.92	81.90	80.00	78.97	79.10	85.71	91.67	90.00	89.19	85.42	84.38	50.00	83.12	84.95	88.10	90.79	92.31	95.24	90.36	90.00	85.71	84.21	88.57	71.47	82.87	11.40	0.097945	0.266851
K	mutually_exclusive	RBBP7	chrX	-	chrX:16870246-16870673,chrX:16870752-16870871	chrX:16870246-16870538,chrX:16870674-16870871	chrX:16870674-16870751	chrX:16870539-16870673			0.00	4.00	0.00	0.00	4.55	NA	2.08	0.00	9.09	3.57	4.26	0.00	3.08	0.00	4.17	2.27	2.63	6.25	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	8.00	0.00	3.12	NA	NA	0.00	NA	0.00	4.35	0.00	2.58	0.00	-2.58	0.075779	0.206669
K	alternative_acceptor	MIIP	chr1	+	chr1:12091461-12091778	chr1:12091461-12091597		chr1:12091598-12091778	chr1:12091778-12091779		5.17	5.13	4.55	7.69	5.56	4.40	3.23	5.66	5.71	2.86	7.14	2.27	2.78	3.92	5.17	0.00	3.33	5.41	2.84	4.08	2.99	5.56	8.33	7.69	2.56	4.44	2.50	0.00	3.03	5.49	4.44	4.65	1.99	0.00	9.09	6.38	2.81	4.44	1.63	0.017568	0.508745
K	intron_retention		chr16	+	chr16:67577373-67578201				chr16:67577372-67577373;chr16:67578201-67578202		0.00	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.56	0.00	2.78	4.55	0.00	4.44	1.85	0.00	3.39	NA	6.06	7.14	3.57	2.50	0.00	0.00	0.00	0.00	0.00	0.682561	1.000000
K	intron_retention	DHX38	chr16	+	chr16:72146429-72146523				chr16:72146428-72146429;chr16:72146523-72146524		94.23	83.19	89.80	95.16	94.62	96.55	90.00	93.33	80.95	84.00	92.31	84.00	93.94	100.00	91.30	100.00	100.00	100.00	85.19	88.00	87.50	91.18	93.44	92.50	93.40	91.30	100.00	100.00	87.50	85.29	80.00	87.84	86.78	90.48	100.00	93.10	88.39	92.31	3.92	0.860903	1.000000
N	alternative_donor	TMEM126B	chr11	+	chr11:85345652-85346710;chr11:85345221-85346710	chr11:85345324-85346710		chr11:85345221-85345323;chr11:85345324-85345651	chr11:85345220-85345221;chr11:85345323-85345324		95.45	100.00	96.88	NA	91.67	NA	100.00	100.00	97.44	94.44	96.15	91.67	96.67	100.00	94.00	100.00	93.10	83.33	100.00	94.74	94.44	100.00	97.44	88.46	NA	94.12	93.55	92.31	100.00	90.91	100.00	92.31	100.00	88.46	94.12	95.35	100.00	97.72	-2.28	0.190170	0.565974
N	jcn_only_AD	TMEM256,TMEM256-PLSCR3	chr17	-	chr17:7306710-7306976;chr17:7306710-7306931;chr17:7306710-7306924	chr17:7306710-7306945		chr17:7306925-7306931;chr17:7306932-7306945;chr17:7306946-7306976	chr17:7306931-7306932;chr17:7306945-7306946;chr17:7306976-7306977		0.00	0.00	0.00	5.88	0.00	4.35	0.00	0.00	0.00	0.00	0.98	0.00	0.00	0.00	0.00	0.00	1.08	0.00	3.45	0.00	4.55	0.00	0.00	6.25	0.00	NA	0.00	3.70	2.04	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	MFSD7	chr4	-	chr4:676680-676998				chr4:676679-676680;chr4:676998-676999		0.00	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	0.00	0.00	7.69	8.70	NA	0.00	0.00	NA	5.56	0.00	0.00	0.00	0.00	7.14	16.67	7.14	10.53	2.08	0.00	-2.08	0.492930	1.000000
K	intron_retention	LAMC1	chr1	+	chr1:183106963-183109538				chr1:183106962-183106963;chr1:183109538-183109539		0.00	0.00	1.05	0.00	2.33	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	3.39	0.00	0.00	0.00	0.00	5.26	1.11	0.00	0.00	2.86	0.00	1.20	2.38	2.22	4.26	0.00	0.00	2.63	2.63	0.425686	1.000000
K	intron_retention		chr4	+	chr4:56766051-56768509				chr4:56766050-56766051;chr4:56768509-56768510		0.00	0.00	3.61	0.00	2.17	NA	0.00	3.23	3.33	0.00	0.00	5.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	NA	0.00	1.43	0.00	0.00	0.00	0.00	2.82	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AD	FAM162A	chr3	+	chr3:122126237-122128585;chr3:122128263-122128585	chr3:122128059-122128585		chr3:122126237-122128058;chr3:122128059-122128262	chr3:122126236-122126237;chr3:122128058-122128059		0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.94	0.00	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	0.00	0.00	7.55	0.00	0.00	0.00	0.00	0.00	9.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.08	7.08	0.027666	0.378797
K	intron_retention		chr19	+	chr19:12781636-12783660				chr19:12781635-12781636;chr19:12783660-12783661		0.00	13.21	17.65	5.88	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	6.90	5.56	6.06	0.00	3.33	NA	0.00	0.00	4.76	20.00	8.33	8.33	4.55	11.11	10.00	10.00	5.00	9.52	3.45	0.00	-3.45	0.765786	1.000000
K	cassette	GMIP	chr19	-	chr19:19745000-19745600	chr19:19745000-19745315;chr19:19745513-19745600		chr19:19745316-19745512			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	98.73	100.00	100.00	100.00	100.00	100.00	97.53	98.98	100.00	100.00	100.00	100.00	100.00	93.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	NA	100.00	100.00	98.53	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	MAF1	chr8	+	chr8:145161867-145161990	chr8:145161867-145161963		chr8:145161964-145161990	chr8:145161990-145161991		8.06	4.00	4.69	1.61	2.70	1.72	0.98	0.00	1.37	1.22	2.08	0.00	0.00	0.00	1.64	0.00	0.00	0.00	2.96	4.00	3.23	4.88	3.45	2.17	2.04	0.00	1.69	0.00	0.97	1.49	16.28	8.11	7.87	3.39	3.45	3.12	2.50	2.00	-0.50	0.565158	0.831946
N	cassette	TATDN3	chr1	+	chr1:212977994-212985589;chr1:212977994-212988354;chr1:212977994-212985592;chr1:212977994-212985568	chr1:212977994-212981077;chr1:212981191-212985592,chr1:212981191-212985568,chr1:212981191-212985589,chr1:212981191-212988354		chr1:212981078-212981190			96.15	93.33	100.00	NA	NA	NA	100.00	95.00	100.00	NA	100.00	NA	100.00	93.75	100.00	NA	80.00	NA	91.67	100.00	100.00	NA	NA	NA	NA	96.43	95.65	NA	NA	NA	100.00	96.15	NA	NA	90.91	NA	96.66	96.29	-0.37	0.804843	0.936947
N	alternative_donor	NR1H2	chr19	+	chr19:50881697-50881778;chr19:50881678-50881778	chr19:50881570-50881778		chr19:50881570-50881677;chr19:50881678-50881696	chr19:50881569-50881570;chr19:50881677-50881678		0.00	0.00	0.00	NA	0.00	NA	2.44	0.00	3.92	0.00	0.00	0.00	0.00	0.00	5.77	0.00	1.96	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.898561	0.977754
N	jcn_only_AA	INO80E	chr16	+	chr16:30008182-30012078;chr16:30008182-30010590;chr16:30008182-30009102	chr16:30008182-30012063		chr16:30009103-30010590;chr16:30010591-30012063;chr16:30012064-30012078	chr16:30010590-30010591;chr16:30012063-30012064;chr16:30012078-30012079		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	jcn_only_AD	CLN5	chr13	+	chr13:77574131-77574592;chr13:77570263-77574592	chr13:77572221-77574592		chr13:77570263-77572220;chr13:77572221-77574130	chr13:77570262-77570263;chr13:77572220-77572221		0.00	0.00	0.00	NA	0.00	0.00	0.00	4.00	3.97	5.56	5.56	0.00	0.00	12.77	4.93	3.23	3.12	0.00	0.00	0.00	0.00	0.00	0.00	13.64	NA	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	3.12	11.36	0.00	0.00	0.00	0.240513	0.657607
N	jcn_only_AD	CDK5RAP2	chr9	-	chr9:123165350-123165520;chr9:123165350-123165616;chr9:123165350-123166313	chr9:123165350-123165593		chr9:123165521-123165593;chr9:123165594-123165616;chr9:123165617-123166313	chr9:123165593-123165594;chr9:123165616-123165617;chr9:123166313-123166314		0.00	11.11	10.34	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	6.25	0.00	0.00	10.00	8.33	NA	0.00	10.00	0.00	18.18	6.45	NA	0.00	5.26	9.52	27.27	10.00	12.50	3.12	0.00	-3.12	0.564357	0.779248
K	cassette	AHSA2	chr2	+	chr2:61408541-61411846	chr2:61408541-61410681;chr2:61410798-61411846		chr2:61410682-61410797			0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	NA	NA	9.09	NA	5.88	NA	NA	NA	0.00	0.00	0.00	0.00	3.23	NA	0.00	6.25	3.57	11.11	6.82	0.00	0.00	0.00	0.00	5.26	5.56	5.00	0.00	0.00	0.00	0.918110	0.978689
K	jcn_only_AA	B3GAT3	chr11	-	chr11:62383272-62383977;chr11:62383709-62383977	chr11:62383713-62383977		chr11:62383272-62383708;chr11:62383709-62383712	chr11:62383271-62383272;chr11:62383708-62383709		11.11	0.00	4.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.54	18.52	0.00	12.50	8.33	25.00	0.00	9.09	5.62	5.88	2.00	5.00	12.90	15.09	3.41	6.90	2.70	3.57	0.00	10.10	10.10	0.055940	0.663989
N	alternative_donor	BST2,WIZ	chr19	-	chr19:17514136-17514488;chr19:17514136-17514507	chr19:17514136-17514484		chr19:17514485-17514488;chr19:17514489-17514507	chr19:17514488-17514489;chr19:17514507-17514508		0.13	0.00	0.00	0.00	0.00	0.20	19.12	17.16	16.69	17.39	19.86	17.28	0.00	0.00	0.00	0.00	0.00	0.00	0.18	0.13	0.00	0.00	0.00	0.54	0.16	0.00	0.32	0.42	0.00	0.18	0.10	0.20	0.16	0.45	0.00	0.23	0.16	0.12	-0.04	0.936184	0.984606
N	alternative_acceptor		chr3	+	chr3:9729576-9729947;chr3:9729576-9729855	chr3:9729576-9730379		chr3:9729856-9729947;chr3:9729948-9730379	chr3:9729947-9729948;chr3:9730379-9730380		96.61	95.00	94.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.12	98.41	97.67	98.47	97.37	94.59	96.55	94.00	100.00	97.56	100.00	95.45	92.71	93.62	96.30	97.69	97.47	97.50	96.58	-0.92	0.956546	0.990505
N	alternative_acceptor	HAUS4	chr14	-	chr14:23417243-23419522;chr14:23417175-23419522	chr14:23417223-23419522		chr14:23417175-23417222;chr14:23417223-23417242	chr14:23417174-23417175;chr14:23417222-23417223		94.12	100.00	97.06	NA	93.10	NA	96.49	100.00	100.00	100.00	98.18	100.00	98.59	100.00	97.44	100.00	98.04	100.00	100.00	96.15	100.00	NA	96.15	NA	100.00	100.00	96.88	NA	96.15	92.86	93.75	100.00	100.00	92.31	88.24	90.00	100.00	98.08	-1.92	0.219180	0.671511
K	intron_retention		chr22	-	chr22:50720172-50720282				chr22:50720171-50720172;chr22:50720282-50720283		1.72	2.70	2.11	NA	5.00	NA	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	0.81	0.00	0.48	0.00	0.00	3.03	0.00	0.00	1.46	2.63	6.90	1.22	3.01	0.00	0.00	NA	1.92	2.11	4.55	2.00	1.94	0.00	1.35	1.47	0.12	0.848907	1.000000
K	alternative_donor	USP9X	chrX	+	chrX:41089033-41089753	chrX:41089081-41089753		chrX:41089033-41089080	chrX:41089032-41089033		4.55	0.00	2.97	2.70	1.20	1.92	0.00	2.63	5.13	6.67	6.17	5.56	2.08	0.00	4.88	5.77	7.50	5.00	5.00	4.62	4.76	0.00	4.35	4.11	2.50	5.77	3.12	2.44	5.26	3.06	4.41	4.65	2.82	3.30	4.08	3.79	2.29	4.48	2.19	0.192319	0.568974
K	intron_retention	BNIP3	chr10	-	chr10:133784292-133784367				chr10:133784291-133784292;chr10:133784367-133784368		3.59	15.00	2.33	5.88	11.54	5.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.49	0.00	0.00	0.00	3.57	2.41	1.32	0.00	9.38	9.52	0.00	1.85	2.31	0.00	13.79	0.00	6.00	8.96	7.14	3.23	0.00	9.09	1.78	2.13	0.34	0.899322	1.000000
N	jcn_only_AA		chr19	+	chr19:45648254-45648464	chr19:45648254-45648351		chr19:45648352-45648464	chr19:45648464-45648465		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	86.67	NA	89.47	NA	100.00	100.00	92.31	NA	89.47	100.00	100.00	90.00	91.07	100.00	100.00	100.00	100.00	NA	100.00	NA	84.62	95.24	90.91	91.30	100.00	100.00	95.45	100.00	4.55	0.801714	0.916010
K	coord_cassette	ZNF516	chr18	-	chr18:74074513-74090809	chr18:74074513-74082482;chr18:74082551-74083421;chr18:74083527-74090809		chr18:74082483-74082550;chr18:74083422-74083526			100.00	100.00	100.00	NA	100.00	100.00	NA	NA	NA	NA	100.00	NA	87.50	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
K	cassette	HNRNPAB	chr5	+	chr5:177636449-177637553	chr5:177636449-177637132;chr5:177637274-177637553		chr5:177637133-177637273			66.67	53.66	46.43	46.34	45.61	28.57	71.25	57.14	76.00	64.73	67.18	58.82	78.22	60.00	51.61	70.82	67.82	60.76	61.11	60.00	58.62	59.05	53.25	60.27	50.00	53.85	50.00	58.97	51.90	65.12	52.94	55.00	42.31	45.16	56.14	56.00	57.38	58.57	1.19	0.871270	0.955969
K	cassette	ARRB2	chr17	+	chr17:4618339-4619267	chr17:4618339-4618445;chr17:4618632-4619267		chr17:4618446-4618631			6.80	21.05	7.87	NA	0.00	NA	0.97	1.71	1.03	0.00	0.92	3.70	1.02	1.05	1.50	0.00	0.93	5.88	NA	4.62	6.25	NA	5.17	NA	20.00	5.21	8.70	4.76	1.82	6.06	3.45	7.41	NA	16.67	15.56	12.50	10.51	4.04	-6.47	0.306728	0.709176
K	cassette	ARGLU1	chr13	-	chr13:107209480-107211779	chr13:107209480-107209906;chr13:107209965-107211779		chr13:107209907-107209964			4.26	0.00	3.85	0.00	5.88	NA	0.00	2.50	0.00	1.09	2.56	1.61	0.00	0.00	1.75	5.88	3.45	0.00	NA	2.56	0.00	1.75	5.66	2.00	NA	2.50	10.53	6.45	8.57	2.22	3.57	4.00	0.00	5.26	2.86	1.41	0.00	2.53	2.53	0.007417	0.267181
K	jcn_only_AD	CNN2	chr19	+	chr19:1032696-1036128;chr19:1032669-1036128	chr19:1032663-1036128		chr19:1032663-1032668;chr19:1032669-1032695	chr19:1032662-1032663;chr19:1032668-1032669		0.00	0.00	0.00	NA	0.00	NA	6.25	0.00	5.45	3.90	6.60	1.55	0.00	4.69	5.88	0.00	1.47	4.00	NA	8.11	0.00	NA	0.00	0.00	0.00	2.13	6.56	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.06	1.06	0.668249	0.830571
K	intron_retention	TIMMDC1	chr3	+	chr3:119232567-119236051				chr3:119232566-119232567;chr3:119236051-119236052		15.29	0.81	8.33	2.70	0.00	7.69	0.00	44.00	28.89	10.00	0.00	14.29	0.00	46.15	35.71	8.62	0.00	9.52	1.37	13.64	2.11	12.24	3.51	18.87	0.00	58.62	13.95	20.93	4.44	18.33	6.59	6.25	0.00	20.45	10.53	26.74	0.00	29.64	29.64	0.198479	1.000000
N	cassette	DENND1C	chr19	-	chr19:6468965-6470305	chr19:6468965-6469606;chr19:6469652-6470305		chr19:6469607-6469651			100.00	92.59	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	cassette	GUK1	chr1	+	chr1:228335401-228336365	chr1:228335401-228336071;chr1:228336241-228336365		chr1:228336072-228336240			40.80	42.60	37.36	46.01	48.62	45.00	87.64	77.42	71.88	81.40	88.24	91.38	83.96	78.57	73.53	86.25	87.88	92.86	51.68	58.44	65.37	50.00	49.54	56.34	46.52	56.52	47.00	60.76	66.67	66.67	58.52	59.86	50.70	52.67	52.24	50.72	51.19	58.48	7.29	0.907374	0.972337
N	jcn_only_AA	OGFR	chr20	+	chr20:61441918-61442799;chr20:61441918-61442813;chr20:61441918-61442719	chr20:61441918-61442714		chr20:61442715-61442719;chr20:61442720-61442799;chr20:61442800-61442813	chr20:61442719-61442720;chr20:61442799-61442800;chr20:61442813-61442814		1.13	0.00	2.86	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.81	0.00	0.00	3.03	0.56	5.00	4.88	2.82	0.83	8.20	0.00	0.00	0.95	1.56	0.00	2.25	1.47	2.17	0.00	3.70	0.00	1.08	0.70	-0.39	0.330619	0.663989
K	cassette	SEC11A	chr15	-	chr15:85214014-85230855	chr15:85214014-85223943;chr15:85224064-85230855		chr15:85223944-85224063			96.34	96.09	98.15	100.00	97.22	100.00	97.33	97.32	95.50	96.25	98.04	99.06	98.42	92.31	94.17	96.25	96.55	96.20	96.30	95.52	95.65	96.23	96.72	96.97	95.35	92.19	96.70	97.89	98.94	97.27	93.06	92.45	96.30	95.97	95.10	95.77	96.30	94.29	-2.01	0.066263	0.622875
N	alternative_donor	KAT8	chr16	+	chr16:31129214-31131506	chr16:31130178-31131506		chr16:31129214-31130177	chr16:31129213-31129214		7.14	4.35	6.52	NA	0.00	NA	0.00	NA	0.00	0.00	4.55	0.00	2.38	0.00	6.25	3.57	3.03	7.14	NA	8.33	0.00	NA	4.00	10.00	NA	7.14	3.03	0.00	4.76	NA	NA	3.70	0.00	8.33	5.26	4.76	1.19	7.14	5.95	0.131731	0.543255
N	jcn_only_AA	LAMTOR4	chr7	+	chr7:99751141-99751489;chr7:99751141-99753198;chr7:99751141-99753225	chr7:99751141-99751472		chr7:99751473-99751489;chr7:99751490-99753198;chr7:99753199-99753225	chr7:99751489-99751490;chr7:99753198-99753199;chr7:99753225-99753226		4.08	4.26	3.61	2.69	4.11	1.95	3.30	1.11	4.00	0.52	1.83	0.00	2.13	0.00	3.75	0.94	1.94	0.00	4.34	8.16	1.85	0.00	2.48	2.67	6.57	7.41	6.47	1.02	2.99	1.69	6.52	5.06	5.95	3.57	3.72	2.05	4.30	5.30	1.00	0.939260	0.980174
K	intron_retention	PVRL2	chr19	+	chr19:45377736-45381479				chr19:45377735-45377736;chr19:45381479-45381480		7.17	3.70	10.40	6.72	2.44	4.98	0.00	1.11	1.47	0.52	0.98	0.73	0.00	0.54	1.66	2.40	1.79	1.47	4.44	3.92	4.29	4.08	5.00	10.11	5.56	3.74	5.95	4.58	2.70	3.82	6.23	7.52	3.92	4.35	2.13	10.13	3.81	3.83	0.02	0.614717	1.000000
K	intron_retention	CPM	chr12	-	chr12:69236110-69249760				chr12:69236109-69236110;chr12:69249760-69249761		90.00	100.00	95.74	83.33	60.00	57.69	96.30	100.00	100.00	100.00	95.74	100.00	100.00	100.00	98.73	100.00	100.00	100.00	70.83	100.00	70.45	100.00	97.30	100.00	40.00	90.91	83.72	95.00	77.78	91.67	89.29	94.44	90.62	100.00	100.00	96.15	93.46	95.45	1.99	0.514954	1.000000
N	jcn_only_AD	GK	chrX	+	chrX:30739896-30742217;chrX:30725716-30742217	chrX:30739113-30742217					97.69	100.00	97.63	96.91	100.00	98.37	100.00	99.33	99.41	100.00	100.00	96.97	100.00	98.53	100.00	97.92	100.00	100.00	100.00	97.60	97.44	100.00	100.00	100.00	100.00	97.45	97.84	100.00	100.00	100.00	95.51	96.83	90.48	95.80	100.00	98.56	100.00	97.64	-2.36	0.677945	0.834613
K	jcn_only_AA	FIG4	chr6	+	chr6:110106232-110107504	chr6:110106232-110106873		chr6:110106874-110107504	chr6:110107504-110107505		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.67	NA	0.00	NA	0.00	6.67	4.55	NA	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AA	UBE2M	chr19	-	chr19:59068162-59068258;chr19:59068195-59068258	chr19:59068158-59068258		chr19:59068158-59068161;chr19:59068162-59068194	chr19:59068157-59068158;chr19:59068161-59068162		96.80	100.00	100.00	100.00	97.14	100.00	100.00	100.00	97.98	100.00	100.00	98.41	100.00	96.81	99.13	98.06	96.67	96.77	100.00	97.75	97.39	98.46	98.10	95.00	100.00	97.83	98.88	100.00	100.00	96.88	96.51	97.90	100.00	98.21	100.00	97.70	100.00	97.28	-2.72	0.006197	0.450187
K	intron_retention		chr19	+	chr19:33077836-33078158				chr19:33077835-33077836;chr19:33078158-33078159		0.00	6.72	5.19	3.18	4.35	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.77	0.00	0.00	0.00	1.52	7.32	1.45	5.17	3.33	7.79	3.50	4.00	2.38	1.34	5.13	1.11	8.00	3.57	2.63	3.82	3.50	4.29	2.08	2.00	-0.08	0.794706	1.000000
N	cassette	CPNE2	chr16	+	chr16:57161816-57171060;chr16:57161816-57179996	chr16:57161816-57168686;chr16:57168739-57171060,chr16:57168739-57179996		chr16:57168687-57168738			96.72	96.97	94.74	NA	97.22	NA	98.36	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.08	100.00	97.78	100.00	100.00	97.44	96.15	NA	97.78	100.00	100.00	98.57	100.00	100.00	100.00	93.75	100.00	100.00	100.00	98.36	98.00	-0.36	0.657874	0.874582
K	intron_retention		chr9	+	chr9:35660856-35660936				chr9:35660855-35660856;chr9:35660936-35660937		72.73	77.19	75.00	76.92	81.63	74.40	55.74	70.37	70.97	57.69	57.32	55.56	63.83	71.93	75.00	68.42	57.69	45.00	73.58	80.00	70.18	79.17	76.87	70.00	72.01	74.14	77.11	81.08	73.83	81.08	82.19	81.16	81.48	83.02	80.60	81.25	72.80	73.44	0.64	0.696840	1.000000
K	alternative_last_exon	AK2	chr1	-	chr1:33483991-33486967;chr1:33480196-33486967	chr1:33485763-33486967	chr1:33480123-33480195	chr1:33485284-33485762			3.57	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.62	0.00	0.00	2.38	NA	0.00	0.00	NA	0.00	0.00	0.00	6.25	0.00	NA	0.00	5.88	NA	0.00	0.00	0.00	0.00	4.17	0.00	1.69	1.69	0.124413	0.340761
K	alternative_donor	NDUFB11	chrX	-	chrX:47001840-47002012	chrX:47001840-47001982		chrX:47001983-47002012	chrX:47002012-47002013		13.50	12.01	12.57	11.42	11.43	10.26	16.59	16.00	11.11	13.64	12.50	11.11	14.11	13.89	10.78	16.75	13.01	15.72	11.85	14.14	11.91	15.13	12.15	11.02	11.25	13.64	11.63	15.79	15.79	13.74	11.54	12.85	13.17	11.80	13.45	11.90	12.59	13.77	1.18	0.546350	0.780071
K	intron_retention	NCF4	chr22	+	chr22:37271826-37272070				chr22:37271825-37271826;chr22:37272070-37272071		18.78	16.42	22.99	17.07	18.50	11.76	7.01	8.20	6.82	2.73	6.09	1.85	7.05	6.25	7.59	6.30	6.01	1.12	16.24	20.00	14.29	18.33	20.23	17.50	21.44	23.28	31.22	24.10	20.84	16.67	23.91	26.91	15.61	17.81	18.03	13.74	15.92	19.39	3.47	0.721181	1.000000
N	jcn_only_AD	SIGLEC9	chr19	+	chr19:51629386-51630286;chr19:51630164-51630286	chr19:51630151-51630286		chr19:51629386-51630150;chr19:51630151-51630163	chr19:51629385-51629386;chr19:51630150-51630151		0.00	0.00	3.39	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.63	1.83	0.00	0.00	0.00	1.27	0.00	0.00	0.00	2.56	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	PCIF1,VPS16	chr20	+	chr20:44572405-44573506	chr20:44572405-44572883		chr20:44572884-44573506	chr20:44573506-44573507		4.17	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	4.76	9.09	5.88	NA	NA	3.57	8.33	0.00	3.57	7.14	0.00	8.00	6.25	NA	7.14	8.33	4.17	5.13	NA	4.35	8.70	6.67	0.00	3.87	3.87	0.042998	0.570243
N	cassette	CHIT1	chr1	-	chr1:203186907-203188343;chr1:203186994-203188343	chr1:203186994-203187062,chr1:203186907-203187062;chr1:203187220-203188343		chr1:203187063-203187219			0.00	5.00	0.00	NA	NA	NA	1.21	0.60	0.59	1.08	1.48	0.65	0.83	0.00	0.00	1.28	0.00	0.00	0.00	10.00	1.24	NA	7.69	NA	NA	NA	NA	NA	NA	NA	3.45	7.69	7.14	7.69	6.67	4.00	1.21	0.60	-0.61	0.991479	0.997468
N	intron_retention		chr1	-	chr1:203148305-203148392				chr1:203148304-203148305;chr1:203148392-203148393		96.24	97.77	98.53	95.77	97.25	94.16	98.65	98.54	98.04	98.44	98.03	98.27	100.00	97.50	100.00	100.00	100.00	100.00	97.59	96.88	92.93	100.00	100.00	100.00	96.40	97.63	100.00	97.89	93.69	94.71	96.59	98.59	97.77	95.98	98.42	97.23	97.77	97.19	-0.58	0.552587	1.000000
K	intron_retention	CLEC11A	chr19	+	chr19:51226930-51227161				chr19:51226929-51226930;chr19:51227161-51227162		3.45	4.29	9.52	0.00	2.33	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.63	0.00	NA	0.00	0.00	0.00	4.48	NA	8.33	0.00	1.89	0.00	4.76	0.00	NA	0.00	2.47	0.00	0.00	2.08	2.33	0.00	3.64	0.00	3.46	0.00	-3.46	0.253699	1.000000
K	intron_retention	NEU1	chr6	-	chr6:31827723-31827818				chr6:31827722-31827723;chr6:31827818-31827819		4.23	5.21	4.13	1.37	3.05	3.23	0.00	1.13	0.58	0.77	0.53	0.00	0.91	0.42	1.32	0.68	0.59	0.00	4.67	4.91	5.08	4.63	4.81	1.35	2.38	1.70	2.06	0.00	1.15	1.25	8.30	7.73	8.12	4.94	3.78	2.37	3.52	2.97	-0.56	0.998430	1.000000
N	jcn_only_AD	RMDN3,TJP1	chr15	-	chr15:41037458-41043623	chr15:41037458-41039143		chr15:41039144-41043623	chr15:41043623-41043624		0.00	0.00	1.45	NA	0.00	NA	0.00	0.00	0.00	1.32	1.09	0.00	0.00	0.00	0.00	0.00	0.52	0.00	0.00	3.33	0.00	2.38	1.69	0.00	NA	0.00	0.00	0.00	3.61	0.00	5.88	0.00	NA	0.00	2.44	0.00	0.00	0.00	0.00	0.194555	0.657607
K	cassette	PLOD3	chr7	-	chr7:100850186-100852133	chr7:100850186-100850858;chr7:100851006-100852133		chr7:100850859-100851005			93.94	100.00	100.00	100.00	97.47	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	96.81	94.00	100.00	96.67	97.67	100.00	96.08	100.00	100.00	100.00	100.00	100.00	96.91	100.00	100.00	100.00	96.55	96.61	100.00	96.51	100.00	100.00	0.00	0.433193	0.740083
K	intron_retention		chr19	+	chr19:50339203-50339482				chr19:50339202-50339203;chr19:50339482-50339483		3.19	3.00	2.99	4.00	3.23	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	4.24	3.66	2.24	NA	0.00	0.00	3.45	3.96	4.69	0.00	3.70	1.39	5.88	6.56	7.14	12.50	4.17	4.69	3.23	3.42	0.20	0.949455	1.000000
K	alternative_acceptor	SELM	chr22	-	chr22:31502033-31503362;chr22:31502150-31503362;chr22:31502102-31503362	chr22:31501952-31503362		chr22:31501952-31502032;chr22:31502033-31502101;chr22:31502102-31502149	chr22:31501951-31501952;chr22:31502032-31502033;chr22:31502101-31502102		96.95	100.00	97.11	100.00	100.00	100.00	NA	100.00	98.06	NA	NA	NA	NA	100.00	98.08	NA	NA	NA	100.00	96.10	96.80	100.00	100.00	100.00	100.00	96.08	97.13	NA	100.00	NA	96.25	96.19	100.00	NA	95.45	85.71	100.00	96.60	-3.40	0.026301	0.546324
N	jcn_only_AA	RASSF4	chr10	+	chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45478357;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45479469		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		61.11	67.74	69.48	NA	NA	NA	75.00	67.29	69.42	73.89	81.93	80.53	81.46	67.19	68.55	78.70	82.93	79.69	NA	59.43	69.77	73.08	70.00	66.67	100.00	60.48	63.38	68.83	62.86	66.17	85.71	80.88	70.00	79.49	83.58	79.10	75.00	64.15	-10.85	0.130891	0.663989
K	intron_retention	ANAPC2	chr9	-	chr9:140069607-140069688				chr9:140069606-140069607;chr9:140069688-140069689		10.00	15.13	17.24	7.69	11.11	17.65	5.26	NA	0.00	NA	NA	NA	0.00	NA	13.33	0.00	NA	NA	11.03	14.29	10.59	9.52	19.57	7.69	9.33	8.33	2.33	16.67	12.77	10.53	21.95	15.87	12.08	4.35	9.38	8.11	10.18	12.14	1.96	0.665599	1.000000
N	alternative_donor	FMNL1	chr17	+	chr17:43317993-43318495	chr17:43317999-43318495		chr17:43317993-43317998	chr17:43317992-43317993		3.26	8.62	4.17	NA	3.92	NA	0.93	0.00	0.00	1.15	0.68	0.00	0.57	1.08	1.75	0.82	0.49	0.00	11.76	1.63	0.00	2.00	4.00	5.41	24.39	1.10	4.35	3.51	4.72	0.00	3.81	3.98	7.69	4.85	3.87	2.94	8.15	1.36	-6.79	0.101106	0.504121
N	jcn_only_AA	HNRNPUL1	chr19	+	chr19:41810167-41811736;chr19:41810167-41811580;chr19:41810167-41811532	chr19:41810167-41811550		chr19:41811533-41811550;chr19:41811551-41811580;chr19:41811581-41811736	chr19:41811550-41811551;chr19:41811580-41811581;chr19:41811736-41811737		11.11	6.67	9.89	NA	18.92	NA	11.01	19.27	10.58	10.91	12.57	14.52	11.18	13.85	14.29	11.11	10.95	8.62	0.00	5.08	12.50	6.45	10.00	14.29	NA	13.24	6.17	8.82	8.97	12.00	16.13	9.68	0.00	16.28	13.85	7.89	6.67	13.54	6.88	0.049314	0.663989
N	alternative_donor	RPF1	chr1	+	chr1:84961747-84961926	chr1:84961756-84961926		chr1:84961747-84961755	chr1:84961746-84961747		0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	N4BP1	chr16	-	chr16:48577173-48585296;chr16:48577173-48581917	chr16:48577173-48580057;chr16:48580166-48585296,chr16:48580166-48581917		chr16:48580058-48580165			96.61	100.00	95.88	100.00	96.00	100.00	100.00	96.15	98.68	95.95	93.75	95.73	100.00	97.76	98.84	93.55	96.23	95.04	NA	95.40	91.67	96.61	97.14	95.69	NA	97.44	95.12	97.56	100.00	97.35	96.77	93.15	100.00	95.40	100.00	98.95	100.00	96.69	-3.31	0.000223	0.050057
N	cassette	CD109	chr6	+	chr6:74528259-74533181	chr6:74528259-74530184;chr6:74530288-74533181		chr6:74530185-74530287			100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	94.92	94.74	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	alternative_last_exon	PPP1R7	chr2	+	chr2:242105857-242109195	chr2:242105857-242106459	chr2:242109196-242109282	chr2:242106460-242106589			18.18	35.11	9.09	60.00	43.96	75.00	19.23	9.09	12.50	25.93	18.37	28.57	25.45	10.53	11.76	26.47	14.63	30.77	37.98	8.33	33.33	29.17	16.25	31.82	76.07	7.41	16.22	25.00	20.55	40.74	10.34	7.46	34.93	29.63	18.75	27.27	35.02	9.71	-25.30	0.018764	0.188658
K	intron_retention	XAB2	chr19	-	chr19:7685333-7685432				chr19:7685332-7685333;chr19:7685432-7685433		1.49	7.60	7.14	7.14	4.12	3.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.41	3.77	5.93	0.00	2.86	6.90	4.65	2.13	2.86	0.00	4.76	1.96	8.74	7.92	4.91	2.86	0.00	9.43	4.53	1.81	-2.72	0.896957	1.000000
K	intron_retention	NUDT16	chr3	+	chr3:131100787-131100889				chr3:131100786-131100787;chr3:131100889-131100890		0.00	2.38	4.17	0.00	6.67	2.82	4.48	0.00	6.12	4.69	7.41	4.35	4.17	11.11	3.12	3.23	3.12	5.26	0.00	6.25	0.00	0.00	5.88	2.33	0.00	0.00	0.00	9.09	7.69	4.69	NA	9.52	0.00	NA	NA	4.94	1.19	0.00	-1.19	0.826289	1.000000
N	alternative_acceptor	MAP2K2	chr19	-	chr19:4094656-4095385;chr19:4094497-4095385;chr19:4095045-4095385;chr19:4094487-4095385;chr19:4094608-4095385;chr19:4094967-4095385;chr19:4094556-4095385	chr19:4094602-4095385		chr19:4094487-4094496;chr19:4094497-4094555;chr19:4094556-4094601;chr19:4094602-4094607;chr19:4094608-4094655;chr19:4094656-4094966;chr19:4094967-4095044	chr19:4094486-4094487;chr19:4094496-4094497;chr19:4094555-4094556;chr19:4094601-4094602;chr19:4094607-4094608;chr19:4094655-4094656;chr19:4094966-4094967		1.87	1.19	2.54	1.15	9.20	4.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.91	1.25	2.79	2.86	1.68	2.78	3.88	1.39	2.73	2.44	1.43	1.47	3.74	1.32	2.60	1.96	2.60	0.99	1.55	1.32	-0.23	0.797501	0.925595
N	coord_cassette	AP5Z1	chr7	+	chr7:4827408-4829462	chr7:4827408-4827784;chr7:4827926-4828470;chr7:4828583-4829462		chr7:4827785-4827925;chr7:4828471-4828582			100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_acceptor	PPP1R21,SLC4A1AP	chr2	+	chr2:48732736-48734407	chr2:48732736-48732856		chr2:48732857-48734407	chr2:48734407-48734408		6.06	7.50	7.50	NA	0.00	NA	2.38	0.00	0.00	NA	0.00	NA	0.00	5.00	0.00	NA	0.00	NA	8.33	4.35	0.00	NA	3.03	NA	7.14	5.88	8.00	NA	3.85	NA	5.88	5.26	4.55	6.25	5.56	5.26	5.84	5.44	-0.41	0.787796	0.920248
K	intron_retention		chr11	-	chr11:104813701-104815474				chr11:104813700-104813701;chr11:104815474-104815475		5.70	5.90	7.14	4.65	3.86	4.26	0.00	0.66	0.52	0.00	0.00	0.00	1.72	0.36	1.94	0.96	0.00	1.23	4.78	5.16	4.44	9.73	8.11	6.64	4.04	3.99	6.16	5.69	5.37	2.08	3.37	4.37	4.08	9.59	7.96	6.36	4.06	3.68	-0.38	0.331741	1.000000
K	alternative_donor	THOC7	chr3	-	chr3:63824176-63825358	chr3:63824176-63825331		chr3:63825332-63825358	chr3:63825358-63825359		95.65	100.00	100.00	NA	100.00	NA	96.15	100.00	100.00	100.00	94.87	95.65	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	0.00	0.850079	0.958191
K	jcn_only_AA	MAD1L1	chr7	-	chr7:2108974-2188786	chr7:2188270-2188786		chr7:2108974-2188269	chr7:2108973-2108974		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	3.45	16.67	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.458141	0.720489
K	intron_retention	RPL6	chr12	-	chr12:112846143-112846223				chr12:112846142-112846143;chr12:112846223-112846224		4.10	0.27	2.97	0.30	0.39	0.67	0.00	0.00	0.00	0.00	0.08	0.00	0.12	0.00	0.25	0.14	0.00	0.00	0.98	5.26	1.84	1.93	0.66	1.08	0.00	1.79	0.57	0.00	0.15	0.27	9.39	5.08	1.75	1.12	0.87	1.13	0.20	2.94	2.75	0.212589	1.000000
N	jcn_only_AD		chr1	-	chr1:235285688-235287746;chr1:235285688-235292027;chr1:235285688-235290234;chr1:235285688-235290943	chr1:235285688-235291909		chr1:235287747-235290234;chr1:235290235-235290943;chr1:235290944-235291909;chr1:235291910-235292027	chr1:235290234-235290235;chr1:235290943-235290944;chr1:235291909-235291910;chr1:235292027-235292028		98.00	92.66	100.00	100.00	98.96	98.72	100.00	98.48	100.00	100.00	99.20	100.00	100.00	98.21	99.34	100.00	100.00	100.00	97.62	100.00	99.02	100.00	100.00	96.92	100.00	100.00	100.00	100.00	98.97	100.00	96.08	97.59	97.00	100.00	97.83	99.15	98.81	98.34	-0.47	0.671984	0.831179
N	alternative_donor	EDEM1	chr3	+	chr3:5255208-5257513	chr3:5255877-5257513		chr3:5255208-5255876	chr3:5255207-5255208		2.00	0.00	2.44	0.00	0.00	0.00	0.00	1.06	1.09	1.64	0.00	0.68	2.27	0.70	1.21	1.49	1.49	0.52	0.00	2.27	0.00	2.86	0.00	2.17	7.69	0.00	0.00	0.00	0.00	1.32	1.56	2.50	0.00	1.89	2.44	1.10	0.00	1.31	1.31	0.773346	0.914454
K	alternative_donor	AP2A2	chr11	+	chr11:994246-1000431	chr11:996226-1000431		chr11:994246-996225	chr11:994245-994246		0.00	4.26	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	1.82	NA	1.11	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	1.61	NA	11.11	NA	0.00	NA	1.85	NA	0.00	0.00	0.00	6.25	3.03	0.00	0.56	0.00	-0.56	0.188206	0.565751
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49950675-49951083;chr19:49950678-49951083	chr19:49950725-49951083		chr19:49950675-49950677;chr19:49950678-49950724	chr19:49950674-49950675;chr19:49950677-49950678		89.23	95.74	94.05	86.84	90.41	91.43	96.36	96.88	100.00	97.14	100.00	100.00	100.00	100.00	96.08	100.00	97.92	96.43	91.47	94.64	91.67	86.67	86.96	90.48	90.38	100.00	93.67	95.65	93.75	100.00	84.62	83.78	91.60	93.55	88.24	93.75	93.67	95.76	2.09	0.992122	0.997956
K	cassette	MED16	chr19	-	chr19:871254-871925	chr19:871254-871605;chr19:871663-871925		chr19:871606-871662			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.38	9.68	6.25	14.81	17.65	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.688041	0.885445
K	intron_retention	RPS6KB2	chr11	+	chr11:67200688-67200810				chr11:67200687-67200688;chr11:67200810-67200811		12.12	14.86	15.22	7.14	8.62	14.29	1.72	0.00	0.00	0.00	1.45	0.00	1.96	6.25	6.90	3.03	0.00	0.00	6.38	0.00	6.67	8.70	7.41	7.14	3.03	9.52	8.51	5.26	6.25	12.50	8.82	8.20	7.69	6.67	4.17	0.00	4.71	7.54	2.83	0.996273	1.000000
N	cassette	APTX	chr9	-	chr9:32986029-32988080;chr9:32986029-32989756	chr9:32986029-32987541;chr9:32987730-32988080,chr9:32987730-32989756		chr9:32987542-32987729			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.33	NA	95.45	100.00	96.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	100.00	100.00	95.24	100.00	100.00	0.00	0.999510	0.999873
N	jcn_only_AD		chr6	-	chr6:2838921-2839568;chr6:2838921-2840678	chr6:2838921-2840652		chr6:2839569-2840652;chr6:2840653-2840678	chr6:2840652-2840653;chr6:2840678-2840679		100.00	100.00	100.00	98.33	100.00	100.00	100.00	99.02	99.23	100.00	94.03	100.00	99.00	99.81	99.43	100.00	100.00	100.00	100.00	99.50	100.00	100.00	100.00	98.12	NA	99.46	98.06	98.39	100.00	98.78	98.94	98.47	100.00	98.83	100.00	98.74	100.00	99.48	-0.52	0.224757	0.657607
K	intron_retention		chr17	+	chr17:7483045-7483127				chr17:7483044-7483045;chr17:7483127-7483128		0.28	0.00	0.20	0.76	0.00	0.00	0.03	0.00	0.00	0.03	0.02	0.05	0.00	0.06	0.00	0.07	0.00	0.03	0.00	0.12	0.00	0.16	0.17	0.12	7.14	0.19	0.19	0.09	0.07	0.17	0.54	0.55	0.00	0.18	0.23	0.10	0.00	0.15	0.15	0.701059	1.000000
K	intron_retention	RELT	chr11	+	chr11:73104963-73105280				chr11:73104962-73104963;chr11:73105280-73105281		0.00	8.70	1.11	NA	0.00	NA	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.04	0.00	9.52	NA	0.00	5.45	NA	3.45	4.35	0.00	0.00	0.00	0.00	0.612201	1.000000
K	intron_retention	CSNK1D	chr17	-	chr17:80197045-80197789				chr17:80197044-80197045;chr17:80197789-80197790		92.61	91.57	93.49	91.94	91.40	92.19	88.89	89.22	90.75	92.17	89.61	90.20	87.65	87.29	90.39	86.67	88.78	89.74	87.78	88.58	87.84	90.91	91.04	100.00	93.12	94.30	92.02	89.85	93.99	95.70	88.15	88.19	89.31	91.56	92.50	100.00	89.10	88.90	-0.20	0.882632	1.000000
N	cassette	DDX1	chr2	+	chr2:15767270-15768761	chr2:15767270-15768568;chr2:15768642-15768761		chr2:15768569-15768641			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_donor	ZNF669	chr1	-	chr1:186283857-186286617	chr1:186283857-186286613		chr1:186286614-186286617	chr1:186286617-186286618		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	cassette	EPSTI1	chr13	-	chr13:43462639-43469144;chr13:43462639-43474445	chr13:43462639-43463346;chr13:43463379-43474445,chr13:43463379-43469144		chr13:43463347-43463378			8.79	7.14	9.18	9.52	0.00	4.92	9.38	8.12	8.76	9.76	8.70	15.77	10.20	7.78	5.92	13.56	6.98	9.85	NA	9.69	6.85	13.33	3.57	11.18	NA	11.41	10.20	10.58	10.00	9.51	4.55	6.11	0.00	6.41	0.00	6.11	8.26	8.45	0.19	0.531586	0.806161
K	intron_retention	PHKG2	chr16	+	chr16:30764879-30767502				chr16:30764878-30764879;chr16:30767502-30767503		4.76	0.00	6.98	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.88	0.00	0.00	NA	5.26	6.67	5.00	NA	4.00	NA	13.33	0.00	6.00	0.00	4.00	NA	4.55	8.77	3.70	0.00	8.33	NA	1.85	2.27	0.42	0.918208	1.000000
K	intron_retention	RAN	chr12	+	chr12:131357466-131357547				chr12:131357465-131357466;chr12:131357547-131357548		0.00	0.00	3.65	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	1.87	0.29	0.41	0.34	0.00	0.00	0.93	0.44	0.49	0.54	6.33	2.54	1.72	0.68	1.28	0.95	0.00	0.00	0.00	0.634217	1.000000
K	intron_retention	CIZ1	chr9	-	chr9:130940770-130940987				chr9:130940769-130940770;chr9:130940987-130940988		4.55	0.00	12.50	NA	5.88	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	NA	0.00	0.00	0.00	10.34	0.00	0.00	5.00	4.88	0.00	3.03	NA	NA	7.14	0.00	6.25	13.89	12.00	0.00	0.00	0.00	0.608000	1.000000
N	jcn_only_AD	PARP8	chr5	+	chr5:50136713-50137799;chr5:50125796-50137799	chr5:50130850-50137799					100.00	100.00	100.00	NA	100.00	94.74	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	cassette	TBC1D22A	chr22	+	chr22:47393606-47507403	chr22:47393606-47432966;chr22:47433095-47507403		chr22:47432967-47433094			92.31	95.83	93.55	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.698331	0.889398
N	cassette	ATP5F1	chr1	+	chr1:111992496-111999251	chr1:111992496-111998707;chr1:111998872-111999251		chr1:111998708-111998871			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.37	100.00	100.00	100.00	100.00	100.00	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.90	100.00	90.00	94.29	97.14	97.56	100.00	98.77	100.00	100.00	0.00	0.928917	0.982136
K	intron_retention	AP1B1	chr22	-	chr22:29747815-29750638				chr22:29747814-29747815;chr22:29750638-29750639		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	2.67	1.92	0.00	0.00	0.00	0.00	1.75	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.685726	1.000000
N	alternative_first_exon	SEPT9	chr17	+	chr17:75423284-75478225,chr17:75450079-75478225,chr17:75447061-75478225;chr17:75401223-75478225;chr17:75450446-75478225;chr17:75316431-75478225;chr17:75446869-75478225;chr17:75447611-75478225	chr17:75398786-75478225	chr17:75401159-75401222;chr17:75450075-75450445;chr17:75315597-75316430;chr17:75446819-75446868;chr17:75447326-75447610	chr17:75398141-75398785			100.00	80.39	97.44	100.00	92.31	NA	86.87	98.98	89.29	99.57	97.55	97.15	81.06	100.00	90.32	98.16	94.12	97.60	NA	100.00	100.00	96.72	89.08	96.39	87.88	98.80	100.00	99.39	95.15	96.70	100.00	100.00	90.91	96.67	94.41	97.55	86.87	100.00	13.13	0.002047	0.020238
N	jcn_only_AD	C6orf48	chr6	+	chr6:31790079-31803187;chr6:31785337-31803187;chr6:31802835-31803187;chr6:31802753-31803187	chr6:31802978-31803187		chr6:31785337-31790078;chr6:31790079-31802752;chr6:31802753-31802834;chr6:31802835-31802977	chr6:31785336-31785337;chr6:31790078-31790079;chr6:31802752-31802753;chr6:31802834-31802835		100.00	88.10	100.00	88.00	89.13	100.00	93.33	95.24	97.14	90.77	95.65	89.66	95.08	100.00	97.62	92.94	96.74	88.24	94.29	100.00	92.86	80.00	87.88	86.36	90.24	100.00	92.54	93.55	89.19	85.71	82.35	96.23	95.35	96.97	84.44	82.69	93.81	100.00	6.19	0.297505	0.657607
K	alternative_acceptor	FAM89B	chr11	+	chr11:65340432-65340833;chr11:65340432-65340823	chr11:65340432-65340872		chr11:65340824-65340833;chr11:65340834-65340872	chr11:65340833-65340834;chr11:65340872-65340873		8.33	0.00	16.22	NA	11.11	NA	16.22	15.79	17.39	21.05	16.67	NA	15.62	28.57	15.38	10.53	16.13	NA	18.18	17.39	10.81	NA	11.54	NA	NA	10.53	11.43	18.18	21.05	10.00	0.00	20.00	17.65	23.08	8.00	8.33	16.22	13.16	-3.06	0.985262	0.995141
N	jcn_only_AA		chr3	+	chr3:52525530-52525892;chr3:52525530-52525646	chr3:52525530-52525887		chr3:52525647-52525887;chr3:52525888-52525892	chr3:52525887-52525888;chr3:52525892-52525893		100.00	97.33	96.67	NA	97.00	NA	100.00	100.00	94.74	100.00	100.00	NA	98.73	100.00	100.00	100.00	100.00	NA	100.00	95.16	100.00	100.00	97.39	100.00	100.00	100.00	100.00	100.00	95.83	NA	100.00	100.00	96.72	100.00	95.29	100.00	99.37	100.00	0.63	0.702179	0.867936
N	jcn_only_AA	ZGPAT	chr20	+	chr20:62365092-62365996;chr20:62365092-62368885	chr20:62365092-62366056					100.00	100.00	97.50	92.68	97.22	95.16	100.00	100.00	100.00	95.83	100.00	100.00	100.00	90.91	100.00	93.02	100.00	95.83	100.00	100.00	97.37	100.00	100.00	96.97	100.00	96.67	97.96	95.12	100.00	93.22	100.00	97.73	96.67	96.97	100.00	100.00	100.00	100.00	0.00	0.379712	0.663989
N	jcn_only_AD	DPP7	chr9	-	chr9:140006207-140006324;chr9:140006207-140006327	chr9:140006207-140006392		chr9:140006325-140006327;chr9:140006328-140006392	chr9:140006327-140006328;chr9:140006392-140006393		3.33	1.96	3.33	2.13	3.31	2.55	1.95	4.59	4.17	6.42	4.48	3.79	1.27	3.12	0.00	1.66	3.53	0.00	1.63	1.11	2.61	2.78	4.04	1.61	0.23	0.90	0.00	2.26	1.61	1.58	2.19	1.50	2.30	2.52	2.01	2.53	1.79	2.66	0.87	0.172052	0.657607
N	jcn_only_AD	IKBKE	chr1	+	chr1:206664192-206664980	chr1:206664215-206664980		chr1:206664192-206664214	chr1:206664191-206664192		3.17	16.67	1.47	NA	0.00	NA	7.69	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	3.12	0.00	NA	0.00	NA	NA	2.42	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	2.44	0.00	8.39	1.21	-7.18	0.134660	0.657607
K	intron_retention	MAZ	chr16	+	chr16:29819150-29819550				chr16:29819149-29819150;chr16:29819550-29819551		18.18	14.55	30.56	NA	21.57	NA	8.43	8.33	12.90	13.83	14.04	9.52	6.99	16.67	20.00	14.89	13.25	8.70	6.67	23.53	35.71	27.27	27.96	NA	35.00	NA	19.44	18.18	27.16	NA	NA	40.00	26.67	18.37	24.44	27.27	11.49	17.43	5.94	0.599577	1.000000
K	intron_retention		chr8	-	chr8:11701751-11702590				chr8:11701750-11701751;chr8:11702590-11702591		98.18	94.07	98.19	93.30	95.01	80.11	96.23	97.00	96.19	94.94	95.39	93.91	95.32	95.76	94.17	95.48	94.76	93.11	87.46	95.61	91.14	94.56	95.85	94.01	91.34	98.20	98.14	97.22	97.31	95.82	94.21	96.06	91.26	97.31	96.95	96.73	92.70	96.38	3.67	0.769326	1.000000
K	jcn_only_AD	NDUFAF3	chr3	+	chr3:49058833-49059778;chr3:49059218-49059778	chr3:49059655-49059778		chr3:49058833-49059217;chr3:49059218-49059654	chr3:49058832-49058833;chr3:49059217-49059218		97.47	100.00	100.00	100.00	97.14	100.00	97.06	96.88	98.94	99.14	98.64	100.00	99.22	100.00	97.75	97.89	97.81	98.96	93.88	96.30	98.94	100.00	98.90	100.00	100.00	96.36	97.00	100.00	100.00	100.00	98.21	97.01	97.78	94.87	98.11	95.24	98.50	97.17	-1.33	0.694616	0.845069
N	alternative_acceptor	ARFGAP1	chr20	+	chr20:57288600-57289016	chr20:57288600-57288972		chr20:57288973-57289016	chr20:57289016-57289017		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AD	KLC1,RP11-73M18.2	chr14	+	chr14:104145856-104151322	chr14:104145883-104151322		chr14:104145856-104145882	chr14:104145855-104145856		69.23	52.50	NA	75.00	70.83	76.92	NA	84.62	75.00	100.00	84.62	NA	92.31	83.33	NA	83.33	90.00	84.62	65.00	57.14	74.42	NA	86.67	NA	81.25	62.50	72.22	73.33	80.00	82.35	44.12	57.89	64.00	85.71	73.68	75.00	65.00	65.87	0.87	0.669833	0.830911
K	mutually_exclusive	FLAD1	chr1	+	chr1:154962734-154965188,chr1:154965263-154965377	chr1:154962734-154965040,chr1:154965150-154965377	chr1:154965189-154965262	chr1:154965041-154965149			0.00	0.00	0.00	0.00	3.03	0.00	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.51	NA	6.25	NA	0.00	0.00	0.00	0.373901	0.510003
N	cassette	ADRBK1	chr11	+	chr11:67048255-67048929	chr11:67048255-67048563;chr11:67048656-67048929		chr11:67048564-67048655			90.79	87.50	88.81	NA	100.00	NA	99.26	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	80.00	89.13	95.00	90.91	83.08	82.35	86.00	97.44	96.12	NA	100.00	NA	84.62	91.76	78.95	84.38	89.09	89.74	86.75	94.12	7.37	0.297414	0.709176
N	cassette	NAPA	chr19	-	chr19:47998854-48017975;chr19:48004007-48018099;chr19:47998854-48018099	chr19:47998854-48006679,chr19:48004007-48006679;chr19:48006760-48017975,chr19:48006760-48018099		chr19:48006680-48006759			96.22	100.00	95.95	100.00	97.67	100.00	97.18	96.91	94.30	96.22	94.79	96.48	97.09	98.01	96.67	98.03	95.48	97.28	NA	96.43	97.62	98.81	96.58	97.73	78.57	96.83	91.03	97.84	95.70	96.65	98.35	95.19	92.31	98.31	99.07	97.80	97.09	96.87	-0.22	0.345006	0.709176
K	alternative_donor	MGLL	chr3	-	chr3:127540682-127540828;chr3:127540682-127541151	chr3:127540682-127541926		chr3:127540829-127541151;chr3:127541152-127541926	chr3:127541151-127541152;chr3:127541926-127541927		87.50	81.82	85.19	92.86	95.24	91.67	94.98	92.39	87.50	93.80	95.28	91.21	90.30	88.62	92.13	93.37	94.10	89.71	NA	86.49	100.00	93.75	95.36	91.53	NA	90.12	88.57	94.83	97.14	95.37	95.12	87.50	100.00	93.98	95.31	91.21	92.64	89.37	-3.27	0.694426	0.870486
K	intron_retention		chr22	-	chr22:50721311-50721478				chr22:50721310-50721311;chr22:50721478-50721479		1.79	1.69	3.50	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.61	0.00	0.00	3.33	0.00	4.76	2.30	0.00	12.82	0.00	3.61	0.00	5.00	NA	0.00	4.95	0.00	0.00	3.90	0.00	0.58	0.00	-0.58	0.700173	1.000000
K	intron_retention		chr4	-	chr4:83275308-83276047				chr4:83275307-83275308;chr4:83276047-83276048		58.33	71.79	73.53	71.43	65.62	53.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	59.38	63.16	67.86	70.00	63.33	71.43	64.52	55.00	66.67	83.33	80.77	66.67	44.44	64.29	51.72	67.65	63.64	64.86	61.95	56.66	-5.29	0.421618	1.000000
K	intron_retention		chr1	+	chr1:45270174-45270321				chr1:45270173-45270174;chr1:45270321-45270322		9.46	17.65	6.93	5.19	8.47	1.54	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.69	1.92	0.00	7.14	4.92	2.90	7.56	12.63	4.90	NA	5.50	5.38	4.55	11.63	3.70	6.12	8.57	13.33	8.97	12.68	7.65	10.23	5.21	-5.02	0.871531	1.000000
K	intron_retention		chr11	+	chr11:47259553-47259688				chr11:47259552-47259553;chr11:47259688-47259689		16.67	0.00	17.86	0.00	1.79	0.00	5.26	13.64	0.00	3.70	14.71	9.09	6.00	11.54	0.00	5.00	9.38	7.69	0.00	13.89	5.45	9.68	11.36	8.70	0.00	8.62	20.69	3.70	4.65	0.00	6.52	7.50	4.90	5.26	15.91	13.56	2.45	12.59	10.14	0.006998	1.000000
N	cassette	CD300A	chr17	+	chr17:72473670-72480139	chr17:72473670-72477427;chr17:72477466-72480139		chr17:72477428-72477465			95.38	93.83	100.00	NA	89.29	NA	93.94	100.00	96.15	NA	92.31	NA	96.08	100.00	100.00	100.00	95.74	NA	89.47	100.00	100.00	NA	91.30	NA	100.00	100.00	93.33	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	95.01	100.00	4.99	0.083772	0.641134
K	jcn_only_AA	SCAMP2	chr15	-	chr15:75140987-75142854	chr15:75141043-75142854		chr15:75140987-75141042	chr15:75140986-75140987		97.70	100.00	99.05	94.74	98.73	94.74	98.31	98.10	98.77	94.12	97.97	98.78	98.73	98.40	95.70	98.00	96.35	97.33	100.00	95.00	94.44	97.10	96.83	98.48	97.56	97.83	97.37	98.18	96.05	97.22	92.45	94.29	100.00	97.56	97.31	96.69	99.37	97.77	-1.60	0.049132	0.663989
K	cassette	HNRNPK	chr9	-	chr9:86589505-86591909	chr9:86589505-86590376;chr9:86590421-86591909		chr9:86590377-86590420			100.00	95.45	98.13	100.00	97.87	NA	99.45	98.94	98.61	99.58	100.00	100.00	99.28	99.24	98.08	99.28	99.81	99.72	100.00	98.71	100.00	98.52	99.29	97.70	NA	99.01	98.92	98.67	100.00	98.92	94.79	97.18	NA	97.75	98.14	98.26	99.37	98.97	-0.39	0.942574	0.985246
K	intron_retention	SMPD1	chr11	+	chr11:6414618-6414846				chr11:6414617-6414618;chr11:6414846-6414847		0.00	0.00	6.82	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	2.44	0.00	NA	0.00	0.00	0.00	0.00	0.00	4.26	7.50	0.00	6.12	8.82	4.00	0.00	0.00	0.00	0.477015	1.000000
K	alternative_acceptor	CMTM3	chr16	+	chr16:66643434-66643785	chr16:66643434-66643661		chr16:66643662-66643785	chr16:66643785-66643786		1.61	0.00	2.53	NA	0.00	NA	1.01	2.08	0.00	0.82	0.47	0.00	0.46	0.00	0.00	0.99	0.86	0.00	0.00	2.56	0.00	0.00	0.94	0.00	0.00	3.45	0.00	0.00	0.00	0.00	5.00	3.23	0.00	3.45	2.08	0.00	0.00	2.32	2.32	0.023240	0.546324
N	cassette	GSAP	chr7	-	chr7:76940767-76941417	chr7:76940767-76941157;chr7:76941258-76941417		chr7:76941158-76941257			92.11	100.00	100.00	100.00	97.62	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	91.84	90.91	92.68	NA	94.34	97.01	100.00	100.00	90.91	100.00	100.00	75.00	100.00	100.00	93.33	100.00	100.00	0.00	0.622558	0.862437
K	intron_retention	NR1H3	chr11	+	chr11:47289907-47290100				chr11:47289906-47289907;chr11:47290100-47290101		5.52	4.17	6.36	4.03	5.29	2.87	0.00	0.36	0.54	0.00	0.43	0.00	0.00	0.23	2.22	0.00	1.67	0.00	3.01	3.49	2.71	4.57	6.32	3.38	8.52	4.50	5.00	1.72	3.56	6.40	3.92	4.29	4.36	2.67	3.45	3.14	3.59	3.71	0.12	0.878053	1.000000
K	intron_retention	IRF7	chr11	-	chr11:615008-615096				chr11:615007-615008;chr11:615096-615097		2.21	4.35	6.98	2.94	0.00	2.17	0.00	0.49	0.29	0.00	0.00	0.00	0.00	0.80	0.60	1.33	0.00	0.65	0.00	2.23	0.00	6.98	6.25	3.08	0.00	1.07	3.90	2.26	0.00	2.33	4.46	2.41	0.00	5.48	0.00	4.04	0.00	1.64	1.64	0.754017	1.000000
K	intron_retention		chr1	-	chr1:153924143-153924493				chr1:153924142-153924143;chr1:153924493-153924494		7.32	20.00	9.15	0.00	4.76	NA	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	2.94	1.85	0.00	0.00	0.00	6.67	5.88	7.41	5.56	16.13	5.56	9.09	4.80	6.25	0.00	7.41	10.42	11.38	4.76	13.95	14.29	13.04	2.38	7.00	4.62	0.967466	1.000000
N	alternative_acceptor	TLN1	chr9	-	chr9:35726532-35732071;chr9:35725725-35732071	chr9:35729397-35732071		chr9:35725725-35726531;chr9:35726532-35729396	chr9:35725724-35725725;chr9:35726531-35726532		6.25	2.44	7.69	NA	NA	NA	0.81	0.65	0.00	1.92	0.84	2.27	0.89	0.88	1.79	2.00	0.99	2.13	0.00	3.70	9.09	NA	4.76	5.26	2.86	2.13	4.00	8.33	5.26	NA	7.69	5.26	NA	9.09	7.69	8.00	0.89	2.92	2.02	0.142628	0.644068
N	alternative_donor	EHBP1L1	chr11	+	chr11:65348723-65349009;chr11:65348798-65349009	chr11:65348845-65349009		chr11:65348723-65348797;chr11:65348798-65348844	chr11:65348722-65348723;chr11:65348797-65348798		92.11	100.00	89.86	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.68	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	88.24	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.287210	0.650093
N	cassette	SNRPD3	chr22	+	chr22:24954201-24967883;chr22:24953769-24967883	chr22:24954201-24963951,chr22:24953769-24963951;chr22:24964145-24967883		chr22:24963952-24964144			100.00	98.53	100.00	98.95	100.00	98.47	95.65	100.00	97.59	99.18	100.00	97.26	96.32	100.00	99.07	95.63	99.41	98.86	98.18	98.33	97.56	100.00	98.00	96.43	100.00	92.98	97.96	97.14	100.00	97.70	100.00	97.87	97.65	100.00	98.00	97.78	97.92	100.00	2.08	0.545581	0.816194
K	alternative_first_exon	RPL6	chr12	-	chr12:112846461-112846844,chr12:112846461-112846853,chr12:112846461-112847006,chr12:112846461-112847209;chr12:112846461-112848123	chr12:112846461-112847390,chr12:112846461-112847214	chr12:112848124-112848209	chr12:112847391-112847400			80.95	100.00	100.00	90.48	88.24	92.86	85.92	85.71	100.00	87.32	88.00	95.35	90.62	100.00	87.18	81.82	94.68	92.31	93.33	96.97	96.08	90.00	93.52	69.23	NA	78.57	100.00	100.00	92.86	100.00	87.10	92.98	97.50	80.00	86.84	87.76	93.33	86.41	-6.92	0.254047	0.464592
N	jcn_only_AA	NABP1	chr2	+	chr2:192549023-192550324;chr2:192549023-192550156;chr2:192549023-192549598	chr2:192549023-192549602		chr2:192549599-192549602;chr2:192549603-192550156;chr2:192550157-192550324	chr2:192549602-192549603;chr2:192550156-192550157;chr2:192550324-192550325		2.80	0.00	3.88	1.82	0.00	1.25	0.00	2.58	2.03	1.28	0.00	2.46	2.17	1.85	2.54	0.97	0.00	0.78	0.00	4.65	1.46	1.77	1.39	3.28	NA	7.04	1.62	2.19	0.00	1.08	6.82	8.40	0.00	3.01	3.92	5.80	0.00	3.73	3.73	0.006598	0.450187
N	jcn_only_AA	PLXND1	chr3	-	chr3:129286626-129288685;chr3:129286879-129288685	chr3:129286649-129288685		chr3:129286626-129286648;chr3:129286649-129286878	chr3:129286625-129286626;chr3:129286648-129286649		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	94.59	100.00	100.00	100.00	100.00	NA	98.08	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	intron_retention		chr2	-	chr2:219130185-219130301				chr2:219130184-219130185;chr2:219130301-219130302		4.69	5.83	9.68	3.85	5.56	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	1.75	0.00	0.00	2.70	5.77	6.45	5.00	8.20	4.76	6.06	5.00	7.58	0.00	5.08	0.00	18.52	8.00	4.00	0.00	3.51	5.26	3.35	4.85	1.50	0.791011	1.000000
N	alternative_acceptor	RPL36	chr19	+	chr19:5690612-5691542;chr19:5690612-5690831	chr19:5690612-5691329		chr19:5690832-5691329;chr19:5691330-5691542	chr19:5691329-5691330;chr19:5691542-5691543		97.97	99.53	98.62	98.90	99.46	99.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.47	99.56	100.00	98.84	96.46	98.64	98.10	98.42	97.95	99.58	98.59	99.61	99.56	99.13	99.07	91.33	96.23	97.82	99.25	99.29	98.72	99.56	98.28	-1.28	0.217620	0.671511
N	alternative_acceptor	AP3D1	chr19	-	chr19:2109344-2109871;chr19:2109207-2109871	chr19:2109125-2109871		chr19:2109125-2109206;chr19:2109207-2109343	chr19:2109124-2109125;chr19:2109206-2109207		8.70	9.68	2.04	5.56	12.50	14.29	8.82	4.35	8.70	2.63	2.94	5.56	5.71	6.90	3.45	11.43	3.03	0.00	0.00	9.68	0.00	6.06	4.55	3.03	0.00	3.57	4.35	7.14	0.00	8.33	7.14	4.65	5.26	6.12	8.89	7.14	5.48	7.02	1.54	0.382908	0.709013
K	intron_retention	TNFAIP2	chr14	+	chr14:103593030-103593341				chr14:103593029-103593030;chr14:103593341-103593342		11.67	20.00	10.05	21.43	NA	26.32	1.15	1.40	1.04	0.51	0.00	0.62	1.01	1.65	1.55	1.66	1.32	0.59	16.67	10.45	5.88	8.53	6.49	7.86	12.16	6.62	8.20	3.00	0.00	4.41	8.62	12.96	16.67	8.67	9.88	6.24	14.42	7.62	-6.80	0.683039	1.000000
K	jcn_only_AD	CC2D1B,RAB13	chr1	-	chr1:52818896-52819274	chr1:52818896-52819189		chr1:52819190-52819274	chr1:52819274-52819275		84.13	94.67	93.88	90.70	92.31	90.74	100.00	93.75	100.00	95.45	100.00	100.00	100.00	100.00	95.00	87.50	100.00	90.00	88.14	84.93	90.32	88.89	90.00	87.76	100.00	95.12	96.92	100.00	91.89	90.20	80.00	83.49	79.10	88.14	88.89	92.63	97.34	89.34	-8.00	0.415579	0.677976
K	intron_retention		chr17	+	chr17:16335615-16336887				chr17:16335614-16335615;chr17:16336887-16336888		8.77	1.98	11.11	5.41	6.67	2.35	0.76	0.00	0.00	0.00	1.59	0.00	0.93	1.07	0.00	0.00	1.23	1.54	3.37	8.06	2.44	3.12	7.69	9.38	3.03	4.08	4.65	3.51	6.10	2.50	3.08	7.89	2.20	8.47	11.11	6.82	2.09	3.58	1.49	0.691259	1.000000
K	intron_retention	USF1	chr1	-	chr1:161010121-161010365				chr1:161010120-161010121;chr1:161010365-161010366		24.56	27.63	27.87	23.81	21.92	33.33	4.26	4.48	5.95	0.00	7.32	4.00	11.48	9.72	15.71	14.81	9.52	NA	19.57	20.62	19.74	25.00	31.82	35.00	20.00	22.58	29.70	21.57	17.39	25.00	22.22	24.87	22.97	32.08	24.69	28.21	19.79	21.42	1.64	0.875273	1.000000
K	intron_retention	IL10RB-AS1	chr21	-	chr21:34638208-34638367				chr21:34638207-34638208;chr21:34638367-34638368		32.50	13.46	60.00	11.63	14.81	13.16	13.04	25.81	32.14	16.67	17.95	18.75	22.45	18.03	36.36	12.50	26.92	31.82	15.91	33.33	8.57	24.00	40.00	40.00	17.65	32.56	47.17	16.67	16.98	14.75	20.00	42.86	12.50	34.38	42.55	42.00	14.69	29.16	14.47	0.166064	1.000000
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400051-46400224;chr11:46400051-46400443;chr11:46400051-46400540	chr11:46400051-46400546		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	3.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	NA	0.00	NA	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	cassette	COASY	chr17	+	chr17:40716596-40717244;chr17:40716596-40717247	chr17:40716596-40717000;chr17:40717066-40717244,chr17:40717066-40717247		chr17:40717001-40717065			71.43	65.91	51.72	50.00	43.18	52.94	96.43	85.19	84.00	100.00	100.00	100.00	100.00	76.47	80.00	100.00	91.30	100.00	64.86	77.27	73.68	64.29	51.52	75.00	60.00	64.29	57.89	75.00	83.33	91.67	65.52	52.38	66.67	60.87	65.00	65.85	66.29	73.95	7.66	0.781115	0.934744
N	alternative_acceptor	SLC35B3	chr6	-	chr6:8411934-8415140	chr6:8413933-8415140		chr6:8411934-8413932	chr6:8411933-8411934		100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	100.00	95.65	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	intron_retention	FLNA	chrX	-	chrX:153578576-153579276				chrX:153578575-153578576;chrX:153579276-153579277		12.82	5.53	12.77	10.80	13.72	8.40	0.74	2.34	1.25	0.97	1.20	0.31	1.38	2.33	5.07	1.60	1.75	0.69	4.37	12.16	7.34	14.36	17.95	11.21	5.71	13.19	11.67	5.12	7.29	4.07	14.05	15.50	4.64	10.71	11.47	6.27	4.50	12.49	7.99	0.127181	1.000000
N	jcn_only_AA	ISCA1	chr9	-	chr9:88881100-88886921;chr9:88880933-88886921	chr9:88881107-88886921		chr9:88880933-88881099;chr9:88881100-88881106	chr9:88880932-88880933;chr9:88881099-88881100		100.00	93.33	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	93.33	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	RBPJ	chr4	+	chr4:26431676-26432040				chr4:26431675-26431676;chr4:26432040-26432041		22.45	17.46	18.18	8.33	9.09	NA	2.63	5.56	0.00	0.00	0.00	NA	2.17	0.00	0.00	3.03	2.22	NA	11.76	17.39	9.68	8.33	7.14	NA	0.00	25.00	17.39	16.67	4.55	NA	NA	NA	20.00	18.18	8.70	NA	7.20	17.39	10.20	0.813103	1.000000
K	intron_retention	KHSRP	chr19	-	chr19:6414132-6415151				chr19:6414131-6414132;chr19:6415151-6415152		68.75	70.00	82.69	56.00	60.78	66.67	70.42	68.42	82.22	76.34	67.00	70.45	64.13	75.00	80.00	73.11	72.32	70.59	57.14	76.00	63.89	82.93	76.32	80.00	60.61	80.00	70.21	67.57	65.57	66.67	74.07	77.19	52.38	68.89	78.46	77.78	62.37	74.53	12.16	0.153573	1.000000
K	alternative_acceptor	C7orf43	chr7	-	chr7:99753449-99754008;chr7:99753543-99754008	chr7:99753555-99754008		chr7:99753449-99753542;chr7:99753543-99753554	chr7:99753448-99753449;chr7:99753542-99753543		7.69	18.18	18.18	NA	27.27	NA	0.00	0.00	NA	NA	4.00	NA	4.17	8.33	0.00	0.00	7.89	NA	NA	15.00	16.67	NA	10.53	NA	NA	10.53	17.86	NA	30.00	NA	10.53	12.50	20.00	9.09	23.81	20.00	11.18	9.43	-1.75	0.741334	0.903518
K	intron_retention	PFDN6	chr6	+	chr6:33258228-33258492				chr6:33258227-33258228;chr6:33258492-33258493		21.05	16.13	20.00	15.09	10.94	15.00	0.00	4.35	0.00	2.56	2.56	3.23	1.72	5.00	2.99	2.60	7.55	5.88	9.68	20.00	6.52	21.88	9.09	25.00	8.70	NA	23.08	6.06	12.00	9.68	30.77	26.67	15.91	17.24	17.86	20.00	9.19	20.00	10.81	0.525972	1.000000
N	alternative_donor	ABCF3	chr3	+	chr3:183907720-183908786	chr3:183908683-183908786		chr3:183907720-183908682	chr3:183907719-183907720		21.62	6.00	19.72	6.25	5.56	0.00	2.44	0.00	4.00	2.63	2.56	7.14	2.70	6.67	7.69	2.44	2.86	7.69	4.55	12.90	5.26	24.00	19.57	33.33	7.14	15.00	15.22	9.09	5.56	6.25	14.29	17.33	3.45	18.92	15.79	21.82	4.00	13.59	9.59	0.060629	0.421463
N	cassette	HSD17B14	chr19	-	chr19:49318399-49337532	chr19:49318399-49335922;chr19:49335990-49337532		chr19:49335923-49335989			91.67	85.11	80.00	88.00	93.44	100.00	94.74	85.71	92.31	95.65	100.00	95.24	100.00	100.00	NA	100.00	100.00	100.00	90.38	90.48	94.29	91.89	96.34	88.46	89.13	100.00	81.82	96.88	92.96	95.00	91.49	100.00	88.10	94.74	93.62	90.91	89.75	91.58	1.83	0.546847	0.816711
N	alternative_donor		chr17	-	chr17:34416644-34417313;chr17:34416644-34416865;chr17:34416644-34417321;chr17:34416644-34417025;chr17:34416644-34417143;chr17:34416644-34417345	chr17:34416644-34417331		chr17:34416866-34417025;chr17:34417026-34417143;chr17:34417144-34417313;chr17:34417314-34417321;chr17:34417322-34417331;chr17:34417332-34417345	chr17:34417025-34417026;chr17:34417143-34417144;chr17:34417313-34417314;chr17:34417321-34417322;chr17:34417331-34417332;chr17:34417345-34417346		97.54	96.97	97.36	99.25	96.53	99.56	98.82	99.43	99.42	99.67	98.55	99.85	100.00	99.53	99.34	99.32	98.86	99.83	97.96	98.34	99.65	97.57	94.43	98.27	100.00	98.28	97.94	98.21	95.44	98.77	98.23	96.02	97.10	96.85	93.66	97.81	98.39	98.31	-0.08	0.899142	0.977754
N	alternative_donor	SCN1B	chr19	+	chr19:35526916-35530020;chr19:35524644-35530020;chr19:35526051-35530020	chr19:35528259-35530020		chr19:35524644-35526050;chr19:35526051-35526915;chr19:35526916-35528258	chr19:35524643-35524644;chr19:35526050-35526051;chr19:35526915-35526916		1.23	0.00	3.99	0.00	0.00	0.00	0.00	4.35	1.67	0.00	0.00	7.69	0.00	2.70	2.02	1.52	0.00	5.71	0.00	3.12	2.08	3.70	0.00	8.51	0.00	3.51	3.33	2.50	0.00	3.17	1.79	1.85	0.00	2.86	0.00	4.95	0.00	2.91	2.91	0.001876	0.112338
K	intron_retention	CHMP3	chr2	-	chr2:86737553-86756410				chr2:86737552-86737553;chr2:86756410-86756411		69.23	79.55	69.05	67.86	79.55	75.00	66.23	80.00	75.00	56.25	58.43	55.56	70.13	76.92	72.73	79.31	61.62	53.23	77.42	66.67	66.67	65.38	71.11	63.16	72.09	79.49	77.14	60.71	66.67	68.00	64.29	67.74	73.08	66.67	73.17	78.33	72.59	73.08	0.49	0.940998	1.000000
N	jcn_only_AA	FUS	chr16	+	chr16:31193986-31195181;chr16:31193986-31199645	chr16:31193986-31195178					77.08	70.59	71.43	75.76	79.66	NA	73.81	65.81	77.50	72.83	70.62	69.59	70.48	73.68	75.61	71.66	70.00	74.38	NA	74.53	77.78	71.67	76.96	77.66	100.00	75.18	73.11	77.44	72.73	80.37	75.38	68.48	66.67	75.24	74.85	76.36	70.59	74.86	4.27	0.685065	0.860871
N	jcn_only_AA	LIMD2	chr17	-	chr17:61776179-61776387;chr17:61767958-61776387	chr17:61776299-61776387		chr17:61767958-61776178;chr17:61776179-61776298	chr17:61767957-61767958;chr17:61776178-61776179		90.91	90.74	87.50	NA	85.29	NA	92.86	88.24	90.00	97.30	93.33	81.82	91.94	96.88	91.67	87.50	94.00	NA	87.50	NA	95.74	NA	91.43	NA	NA	84.62	78.26	85.71	94.87	NA	NA	95.00	90.62	NA	91.67	NA	90.74	89.57	-1.17	0.846060	0.938257
N	alternative_donor	ARAP1	chr11	-	chr11:72410598-72412693	chr11:72410598-72412164		chr11:72412165-72412693	chr11:72412693-72412694		0.54	1.28	0.44	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.49	0.59	0.83	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.12	0.82	0.92	1.33	1.43	0.00	0.00	0.00	3.12	1.03	0.70	1.02	0.91	0.24	-0.66	0.179594	0.563271
K	intron_retention	COQ9	chr16	+	chr16:57493633-57493962				chr16:57493632-57493633;chr16:57493962-57493963		0.00	3.70	3.23	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	7.69	0.00	0.00	6.67	0.00	0.00	NA	15.79	0.00	0.00	7.14	0.00	4.17	0.00	0.00	4.35	6.90	0.00	0.00	0.00	0.499626	1.000000
K	alternative_acceptor	UBE2S	chr19	-	chr19:55915770-55918182	chr19:55915847-55918182		chr19:55915770-55915846	chr19:55915769-55915770		95.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.30	97.50	100.00	94.92	100.00	100.00	92.68	100.00	100.00	100.00	100.00	100.00	100.00	96.61	97.30	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	UBA7	chr3	-	chr3:49846593-49846974	chr3:49846593-49846822;chr3:49846898-49846974		chr3:49846823-49846897			80.43	100.00	63.64	NA	58.33	NA	90.00	93.55	78.12	100.00	100.00	100.00	100.00	96.15	76.19	NA	100.00	100.00	NA	77.08	70.59	NA	60.00	57.14	NA	78.57	63.64	NA	83.33	83.64	80.00	50.00	58.33	66.67	NA	71.88	95.00	80.22	-14.78	0.803642	0.936947
N	jcn_only_AD	AGAP3	chr7	+	chr7:150789339-150813879;chr7:150783148-150813879;chr7:150787253-150813879	chr7:150784160-150813879		chr7:150783148-150784159;chr7:150784160-150787252;chr7:150787253-150789338	chr7:150783147-150783148;chr7:150784159-150784160;chr7:150787252-150787253		100.00	100.00	99.10	90.91	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	100.00	100.00	NA	92.31	100.00	100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.269290	0.657607
K	cassette	SH3GL1	chr19	-	chr19:4364219-4366497	chr19:4364219-4365478;chr19:4365623-4366497		chr19:4365479-4365622			100.00	100.00	97.92	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.77	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	94.59	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	cassette	DYNC1LI2	chr16	-	chr16:66757726-66759730	chr16:66757726-66758564;chr16:66758652-66759730		chr16:66758565-66758651			3.85	0.00	6.06	NA	NA	3.70	0.00	0.00	2.94	0.00	0.00	0.00	0.00	7.41	0.00	0.00	8.70	0.00	0.00	6.67	8.33	NA	0.00	0.00	0.00	3.85	0.00	0.00	NA	0.00	12.50	0.00	0.00	0.00	0.00	3.57	0.00	5.26	5.26	0.021266	0.393056
N	alternative_donor		chr11	+	chr11:67816762-67817084	chr11:67816905-67817084		chr11:67816762-67816904	chr11:67816761-67816762		100.00	100.00	100.00	93.75	93.98	89.66	NA	82.35	NA	NA	90.91	NA	100.00	77.27	100.00	NA	NA	NA	90.91	100.00	96.39	88.00	98.44	100.00	100.00	90.91	95.83	100.00	94.12	96.00	96.61	95.71	100.00	100.00	93.75	92.59	100.00	93.76	-6.24	0.148327	0.563084
K	intron_retention	MOV10	chr1	+	chr1:113242963-113243037				chr1:113242962-113242963;chr1:113243037-113243038		5.58	2.53	3.64	8.11	3.51	4.40	0.00	0.70	0.00	0.00	0.00	3.45	0.00	1.15	0.00	0.00	0.00	0.00	4.26	5.96	4.13	13.33	8.33	7.35	0.00	2.70	4.35	6.00	3.57	4.48	12.07	9.36	8.77	5.88	3.70	4.92	1.26	4.14	2.88	0.568900	1.000000
K	jcn_only_AA	SUPT5H	chr19	+	chr19:39936278-39936521;chr19:39936278-39936518	chr19:39936278-39936443		chr19:39936444-39936518;chr19:39936519-39936521	chr19:39936518-39936519;chr19:39936521-39936522		78.12	100.00	79.17	NA	NA	NA	80.00	71.11	79.07	72.34	61.70	80.00	80.43	60.71	70.97	65.00	67.35	64.86	NA	80.00	72.73	77.78	72.09	63.64	71.43	83.33	83.67	86.36	80.00	78.26	62.50	67.74	75.00	59.38	69.77	68.89	80.00	74.62	-5.38	0.200820	0.663989
K	alternative_acceptor	PKMYT1	chr16	-	chr16:3023217-3024000	chr16:3023447-3024000		chr16:3023217-3023446	chr16:3023216-3023217		92.31	87.72	NA	NA	87.76	80.00	65.12	100.00	NA	25.00	44.74	NA	47.22	NA	NA	23.53	34.62	NA	100.00	100.00	92.86	NA	94.74	NA	87.10	100.00	NA	NA	80.56	NA	NA	NA	93.75	NA	76.92	NA	87.41	100.00	12.59	0.079968	0.585944
K	alternative_donor	NCOR2	chr12	-	chr12:124810917-124812092	chr12:124810917-124811954		chr12:124811955-124812092	chr12:124812092-124812093		37.14	15.91	31.82	30.77	18.42	NA	24.39	21.43	23.53	25.00	27.85	38.71	17.65	20.00	21.43	15.62	24.53	20.00	14.29	40.00	30.77	23.68	24.73	20.83	13.33	31.71	28.00	22.58	20.51	15.69	25.93	27.78	11.11	19.15	16.39	17.91	15.10	28.82	13.72	0.009236	0.212718
N	jcn_only_AA	PCBP2	chr12	+	chr12:53861628-53862563;chr12:53861628-53861966	chr12:53861628-53862560		chr12:53861967-53862560;chr12:53862561-53862563	chr12:53862560-53862561;chr12:53862563-53862564		86.32	78.60	81.40	81.55	85.85	91.43	79.48	80.92	77.61	81.31	82.17	80.20	77.78	77.86	79.73	79.41	81.52	79.17	84.40	81.44	73.98	81.58	82.14	85.49	69.74	85.71	86.99	84.00	81.97	85.14	86.42	83.65	83.85	86.38	82.32	84.64	79.04	83.57	4.53	0.147649	0.663989
N	cassette	MTX2	chr2	+	chr2:177193641-177202220;chr2:177193641-177195311	chr2:177193641-177194028;chr2:177194155-177195311,chr2:177194155-177202220		chr2:177194029-177194154			89.47	100.00	100.00	NA	100.00	NA	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	93.75	94.44	100.00	NA	92.31	100.00	95.45	NA	100.00	NA	NA	100.00	96.67	100.00	100.00	NA	NA	95.83	90.91	100.00	100.00	93.33	100.00	100.00	0.00	0.683020	0.884591
N	cassette	LTBR	chr12	+	chr12:6495611-6499277;chr12:6497672-6499825;chr12:6495611-6499825;chr12:6497672-6499277	chr12:6497672-6497965,chr12:6495611-6497965;chr12:6497992-6499277,chr12:6497992-6499825		chr12:6497966-6497991			96.36	93.15	96.50	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	93.98	91.18	100.00	96.43	100.00	100.00	100.00	100.00	96.77	94.59	100.00	95.71	97.01	100.00	100.00	97.73	-2.27	0.560543	0.824117
N	alternative_donor	AGTRAP	chr1	+	chr1:11809674-11810133;chr1:11808668-11810133	chr1:11808647-11810133		chr1:11808647-11808667;chr1:11808668-11809673	chr1:11808646-11808647;chr1:11808667-11808668		38.61	51.72	35.05	28.00	35.00	50.00	31.58	38.14	29.32	34.78	42.86	22.22	48.00	37.50	40.91	41.67	39.29	28.57	26.67	33.80	39.80	30.00	42.31	31.25	32.14	34.45	32.46	34.48	36.36	32.14	34.67	31.52	38.46	38.10	33.33	36.00	35.30	36.09	0.79	0.664161	0.850309
K	cassette	TMEM120A	chr7	-	chr7:75616747-75617035	chr7:75616747-75616855;chr7:75616921-75617035		chr7:75616856-75616920			90.70	91.18	100.00	88.24	83.87	76.92	100.00	91.67	98.31	85.00	90.00	89.47	100.00	100.00	92.68	85.71	78.57	NA	92.31	100.00	92.11	NA	87.50	NA	89.29	91.30	86.84	NA	80.00	85.00	96.30	80.77	77.42	88.24	76.47	88.24	91.75	93.98	2.24	0.417668	0.728056
K	intron_retention		chr3	+	chr3:52545762-52546356				chr3:52545761-52545762;chr3:52546356-52546357		0.00	4.83	0.00	NA	7.14	0.00	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.45	0.00	NA	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.63	0.00	0.00	0.00	6.25	1.02	0.60	0.00	4.15	0.00	-4.15	0.142099	1.000000
N	cassette	CD44	chr11	+	chr11:35219794-35229651;chr11:35211613-35226058;chr11:35219794-35236398;chr11:35219794-35232792;chr11:35222743-35236398;chr11:35211613-35229651;chr11:35211613-35232792;chr11:35211613-35236398;chr11:35219794-35226058;chr11:35222743-35226058	chr11:35219794-35223214,chr11:35211613-35223214,chr11:35222743-35223214;chr11:35223335-35232792,chr11:35223335-35236398,chr11:35223335-35226058,chr11:35223335-35229651		chr11:35223215-35223334			0.11	0.00	0.10	0.46	0.00	1.37	0.00	0.39	0.97	4.08	0.30	5.77	0.00	0.26	0.38	1.67	0.11	3.94	0.00	0.15	0.12	0.95	0.24	3.90	0.00	0.08	0.05	0.94	0.50	2.41	0.25	0.21	0.00	0.65	0.17	1.58	0.00	0.20	0.20	0.007186	0.267181
K	cassette	DDX27	chr20	+	chr20:47846887-47849842	chr20:47846887-47847559;chr20:47847653-47849842		chr20:47847560-47847652			9.09	0.00	0.00	0.00	10.53	NA	0.00	8.33	10.00	6.45	6.90	7.69	0.00	7.14	3.70	9.38	7.89	0.00	0.00	6.25	8.33	4.35	8.82	5.88	NA	10.00	4.35	5.26	7.14	11.11	10.00	0.00	NA	3.70	4.76	5.26	0.00	8.71	8.71	0.000040	0.036505
N	cassette	DEF6	chr6	+	chr6:35277588-35280078;chr6:35277588-35279990	chr6:35277588-35278235;chr6:35278422-35280078,chr6:35278422-35279990		chr6:35278236-35278421			87.50	89.66	84.85	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	96.55	100.00	NA	100.00	100.00	NA	NA	94.12	90.00	NA	100.00	NA	100.00	100.00	92.31	NA	100.00	NA	NA	81.82	71.43	100.00	96.55	90.00	96.55	100.00	3.45	0.450248	0.751504
N	cassette	SMARCAL1	chr2	+	chr2:217329391-217339991	chr2:217329391-217332666;chr2:217332770-217339991		chr2:217332667-217332769			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	83.33	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	93.75	90.00	NA	NA	100.00	100.00	100.00	0.00	0.190984	0.709176
N	alternative_donor		chr5	-	chr5:176951034-176951774;chr5:176951034-176951590	chr5:176951034-176951185		chr5:176951186-176951590;chr5:176951591-176951774	chr5:176951590-176951591;chr5:176951774-176951775		77.78	100.00	85.29	100.00	89.29	83.33	NA	NA	NA	NA	NA	NA	NA	NA	88.24	NA	NA	NA	86.36	87.50	100.00	NA	90.91	NA	89.19	100.00	95.35	NA	100.00	100.00	89.47	85.29	87.50	100.00	100.00	100.00	88.34	88.48	0.14	0.721929	0.885082
N	cassette	KATNA1	chr6	-	chr6:149919487-149924403	chr6:149919487-149922729;chr6:149922889-149924403		chr6:149922730-149922888			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	85.00	85.71	83.33	100.00	100.00	85.00	100.00	100.00	100.00	NA	100.00	93.75	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	86.67	93.10	100.00	90.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	CDC26	chr9	-	chr9:116035719-116037661				chr9:116035718-116035719;chr9:116037661-116037662		6.67	0.00	9.30	6.67	6.67	16.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	5.13	4.17	0.00	5.71	5.88	0.00	2.33	5.13	2.86	5.56	2.27	16.22	17.78	0.00	9.09	10.00	9.68	0.00	3.73	3.73	0.487623	1.000000
K	alternative_donor	RHOC	chr1	-	chr1:113247791-113249353;chr1:113247791-113249699	chr1:113247791-113249454		chr1:113249354-113249454;chr1:113249455-113249699	chr1:113249454-113249455;chr1:113249699-113249700		3.08	8.33	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	0.00	NA	1.92	2.13	1.49	2.38	2.22	0.00	2.38	0.00	0.00	0.00	0.82	1.72	2.50	0.00	0.00	0.00	2.15	0.00	1.82	1.82	0.982068	0.994374
N	jcn_only_AA	CDC34	chr19	+	chr19:537148-541345;chr19:537148-541338;chr19:537148-538677	chr19:537148-541342		chr19:538678-541338;chr19:541339-541342;chr19:541343-541345	chr19:541338-541339;chr19:541342-541343;chr19:541345-541346		1.67	3.03	5.97	6.00	4.88	3.23	3.57	6.06	2.13	3.57	7.02	9.09	7.69	0.00	5.36	3.28	9.84	6.67	4.76	0.00	0.00	5.00	3.17	5.26	5.62	0.00	3.17	2.63	11.29	3.12	5.71	2.08	0.00	0.00	4.44	3.39	4.17	0.83	-3.33	0.266808	0.663989
N	jcn_only_AA	OAS1	chr12	+	chr12:113346630-113348902;chr12:113346630-113348855	chr12:113346630-113348840		chr12:113348841-113348855;chr12:113348856-113348902	chr12:113348855-113348856;chr12:113348902-113348903		1.12	0.00	0.00	10.00	NA	0.00	0.00	0.42	0.77	0.00	0.00	0.87	0.00	0.71	0.99	0.00	0.00	0.76	NA	0.85	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.00	1.05	0.00	NA	0.00	0.00	1.10	0.00	0.85	0.85	0.000459	0.127785
K	intron_retention		chr19	-	chr19:51009830-51010830				chr19:51009829-51009830;chr19:51010830-51010831		9.38	6.90	7.14	0.00	2.86	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	1.28	0.00	2.78	NA	2.22	6.25	5.88	0.00	0.00	3.33	2.38	4.88	0.00	0.00	0.00	6.25	0.68	1.19	0.51	0.904968	1.000000
N	cassette	PLGRKT	chr9	-	chr9:5361889-5436568;chr9:5361889-5431896	chr9:5361889-5381862;chr9:5382032-5431896,chr9:5382032-5436568		chr9:5381863-5382031			0.87	0.00	1.68	0.00	0.00	10.81	0.00	0.00	0.00	0.00	0.00	0.00	2.86	2.27	5.97	6.06	4.17	0.00	0.00	0.76	2.80	2.27	0.00	2.47	NA	2.33	3.68	3.33	0.00	2.67	0.00	0.00	4.35	0.00	2.78	1.57	0.00	0.81	0.81	0.703468	0.892190
K	cassette	RALY	chr20	+	chr20:32661442-32663679	chr20:32661442-32661624;chr20:32661673-32663679		chr20:32661625-32661672			67.92	60.49	66.67	58.82	60.45	65.91	82.98	75.00	73.39	86.79	86.46	87.14	78.98	79.02	76.69	91.01	86.73	91.89	61.11	63.73	61.70	64.71	64.16	77.27	64.00	65.15	54.64	67.74	59.62	74.74	74.31	68.55	66.15	68.04	68.37	70.15	65.08	71.12	6.04	0.692860	0.887109
N	cassette	CLASRP	chr19	+	chr19:45570853-45572323;chr19:45570853-45571677	chr19:45570853-45571272;chr19:45571317-45572323,chr19:45571317-45571677		chr19:45571273-45571316			88.00	88.05	86.05	89.19	94.83	94.12	NA	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	NA	NA	88.42	91.18	83.33	93.33	100.00	86.96	86.26	100.00	97.14	100.00	88.89	100.00	85.71	87.36	77.78	96.00	90.91	93.18	88.05	91.18	3.13	0.325101	0.709176
N	jcn_only_AD	PSMD1	chr2	+	chr2:232037116-232037248;chr2:232030732-232037248	chr2:232035436-232037248					100.00	100.00	100.00	100.00	100.00	98.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.89	98.45	98.86	100.00	100.00	100.00	100.00	100.00	0.00	0.696891	0.845069
N	alternative_donor	SDHB	chr1	-	chr1:17371384-17380442;chr1:17371384-17380246	chr1:17371384-17371635		chr1:17371636-17380246;chr1:17380247-17380442	chr1:17380246-17380247;chr1:17380442-17380443		0.00	0.00	0.00	0.00	0.00	NA	0.00	3.33	0.00	0.00	0.00	0.00	0.00	5.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	1.67	0.084209	0.475124
K	alternative_last_exon	ZNF688	chr16	-	chr16:30581758-30582330	chr16:30582262-30582330	chr16:30580667-30581757	chr16:30582055-30582261			5.88	0.00	5.00	0.00	0.00	2.33	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	2.00	0.00	3.03	NA	5.26	NA	0.00	5.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.264741	0.478076
K	intron_retention		chr17	-	chr17:73263049-73263618				chr17:73263048-73263049;chr17:73263618-73263619		0.00	0.00	0.00	NA	5.56	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	10.34	0.00	0.00	NA	2.56	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	9.09	6.45	10.00	0.00	0.00	0.00	0.00	0.00	0.330954	1.000000
K	intron_retention	DHRS1	chr14	-	chr14:24760832-24761389				chr14:24760831-24760832;chr14:24761389-24761390		0.00	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	9.09	NA	6.67	0.00	0.00	4.00	14.29	NA	5.00	0.00	13.33	0.00	0.00	0.00	5.56	0.00	0.00	2.00	2.00	0.338180	1.000000
N	jcn_only_AA	MITD1	chr2	-	chr2:99784176-99786012;chr2:99778132-99786012;chr2:99785934-99786012;chr2:99784311-99786012	chr2:99785896-99786012		chr2:99778132-99784175;chr2:99784176-99784310;chr2:99784311-99785895;chr2:99785896-99785933	chr2:99778131-99778132;chr2:99784175-99784176;chr2:99784310-99784311;chr2:99785895-99785896		0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.88	4.35	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	4.11	4.35	0.00	0.00	0.00	0.00	0.00	0.901402	0.966004
N	alternative_last_exon		chr1	+	chr1:101440459-101461029;chr1:101440459-101552407	chr1:101440459-101440774	chr1:101552408-101552824	chr1:101440775-101447309			100.00	78.57	87.80	60.00	76.92	57.89	84.21	100.00	94.59	92.86	100.00	100.00	93.75	100.00	95.24	90.48	95.24	100.00	60.00	100.00	76.47	100.00	80.00	96.00	NA	100.00	100.00	NA	90.91	80.00	NA	80.00	70.00	100.00	100.00	87.88	78.57	100.00	21.43	0.017342	0.184325
N	cassette	PYCR2,RP4-559A3.7	chr1	-	chr1:226109072-226109557	chr1:226109072-226109251;chr1:226109345-226109557		chr1:226109252-226109344			92.31	100.00	100.00	NA	89.66	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.21	NA	100.00	100.00	86.67	100.00	100.00	91.30	100.00	100.00	100.00	95.83	100.00	100.00	100.00	0.00	0.175699	0.709176
N	cassette	AAMDC	chr11	+	chr11:77532288-77580767	chr11:77532288-77553524;chr11:77553675-77580767		chr11:77553525-77553674			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	92.00	100.00	100.00	100.00	100.00	100.00	98.04	100.00	100.00	100.00	100.00	100.00	0.00	0.801128	0.936947
K	cassette	ARHGAP4	chrX	-	chrX:153184738-153186079	chrX:153184738-153185020;chrX:153185141-153186079		chrX:153185021-153185140			6.82	0.00	4.17	NA	2.44	NA	3.82	3.70	8.33	2.27	9.21	4.17	3.24	3.33	0.00	5.13	4.08	7.50	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	4.92	4.35	NA	0.00	4.00	2.27	1.64	1.15	1.62	3.33	1.71	0.282387	0.709176
N	jcn_only_AA	H2AFY	chr5	-	chr5:134678432-134678949;chr5:134670832-134678949	chr5:134675266-134678949		chr5:134670832-134675265;chr5:134675266-134678431	chr5:134670831-134670832;chr5:134675265-134675266		5.42	0.00	6.36	1.74	2.57	2.44	0.00	0.00	0.00	0.00	1.03	0.00	0.57	1.47	0.00	1.47	1.63	0.00	2.41	6.06	1.47	3.01	2.81	1.93	0.00	8.24	4.30	1.86	2.51	1.33	3.48	3.97	0.00	2.85	2.70	1.71	0.00	4.45	4.45	0.032971	0.663989
N	alternative_acceptor		chr20	+	chr20:409234-409609;chr20:409234-409571;chr20:409234-409606	chr20:409234-409594		chr20:409572-409594;chr20:409595-409606;chr20:409607-409609	chr20:409594-409595;chr20:409606-409607;chr20:409609-409610		93.94	96.00	94.44	NA	90.91	93.75	100.00	96.88	100.00	NA	NA	NA	100.00	100.00	97.44	NA	NA	NA	100.00	97.22	94.74	NA	92.86	94.74	81.25	97.83	95.83	91.67	100.00	97.22	97.14	100.00	95.00	91.67	93.75	96.97	98.00	97.18	-0.82	0.581713	0.841528
N	cassette	ADAP2	chr17	+	chr17:29251550-29258906;chr17:29250089-29258906;chr17:29250089-29261202	chr17:29250089-29253844,chr17:29251550-29253844;chr17:29253937-29258906,chr17:29253937-29261202		chr17:29253845-29253936			86.44	100.00	88.00	NA	80.00	NA	84.43	87.37	89.29	90.48	93.59	90.00	89.68	93.91	89.23	90.70	91.56	100.00	NA	84.06	NA	NA	92.45	66.67	100.00	88.98	88.00	100.00	90.74	NA	80.77	86.36	NA	86.67	89.36	82.61	94.84	86.91	-7.94	0.193240	0.709176
K	alternative_acceptor	CCNL2	chr1	-	chr1:1326246-1328775	chr1:1328184-1328775		chr1:1326246-1328183	chr1:1326245-1326246		70.27	63.16	77.27	NA	68.75	NA	45.45	NA	40.00	31.58	38.10	NA	42.86	50.00	58.33	33.33	40.00	NA	NA	67.74	47.06	75.68	73.08	73.81	NA	75.86	77.27	73.91	74.19	78.95	50.00	74.07	50.00	83.02	74.51	79.03	47.73	67.74	20.01	0.120559	0.606219
K	jcn_only_AA	HLA-DQA1	chr6	+	chr6:32610562-32611069	chr6:32610562-32610728		chr6:32610729-32611069	chr6:32611069-32611070		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	78.26	100.00	100.00	94.05	96.35	94.40	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	100.00	100.00	0.00	0.391002	0.663989
K	alternative_first_exon	TAGLN2	chr1	-	chr1:159890328-159892981,chr1:159890328-159894246,chr1:159890328-159894272,chr1:159890328-159894276,chr1:159890328-159895127;chr1:159890328-159893225;chr1:159890328-159894283	chr1:159890328-159895239	chr1:159893226-159893507;chr1:159894284-159894341	chr1:159895240-159895522			88.46	100.00	97.35	NA	100.00	NA	99.02	95.65	96.26	99.19	100.00	99.04	99.39	90.77	95.08	98.79	98.65	99.07	100.00	84.48	97.14	97.56	97.44	97.78	100.00	82.61	98.88	100.00	98.33	100.00	96.00	88.71	100.00	100.00	100.00	98.33	100.00	89.61	-10.39	0.006739	0.040950
N	alternative_donor	NUMA1	chr11	-	chr11:71716416-71717080	chr11:71716416-71716507		chr11:71716508-71717080	chr11:71717080-71717081		8.62	11.94	10.20	0.00	5.88	7.69	6.15	7.41	11.76	2.22	8.57	1.54	2.27	6.52	9.09	3.85	5.19	1.61	16.67	10.26	6.67	6.67	17.57	6.35	0.00	4.48	9.00	12.00	9.23	5.66	2.50	10.00	4.55	10.71	11.11	7.95	5.35	6.96	1.62	0.918203	0.981916
N	alternative_donor	MYO18A	chr17	-	chr17:27401933-27404045;chr17:27401933-27409333	chr17:27401933-27406744		chr17:27404046-27406744;chr17:27406745-27409333	chr17:27406744-27406745;chr17:27409333-27409334		0.00	1.82	1.96	NA	0.00	NA	3.12	3.57	0.00	0.00	2.78	0.00	2.27	5.88	4.00	0.00	2.86	NA	0.00	0.00	0.00	0.00	1.72	0.00	2.22	2.27	2.86	0.00	0.00	0.00	0.00	1.20	0.00	3.33	0.00	2.33	2.02	1.14	-0.89	0.743327	0.892350
N	cassette	PPM1G	chr2	-	chr2:27605096-27606818;chr2:27605096-27606232	chr2:27605096-27605342;chr2:27605473-27606818,chr2:27605473-27606232		chr2:27605343-27605472			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	CD2BP2	chr16	-	chr16:30364609-30364688				chr16:30364608-30364609;chr16:30364688-30364689		7.25	8.42	7.61	1.56	2.20	3.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.87	8.97	4.08	8.33	2.60	0.00	3.41	4.08	1.30	0.00	1.16	0.00	22.99	12.12	12.50	3.51	6.90	9.23	5.64	5.67	0.02	0.908363	1.000000
K	intron_retention	SERTAD3	chr19	-	chr19:40947994-40950121				chr19:40947993-40947994;chr19:40950121-40950122		2.17	5.00	9.09	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.09	0.00	0.00	0.00	0.00	4.17	2.22	0.00	0.00	0.00	0.00	12.00	14.29	18.18	11.76	0.00	0.00	4.17	2.20	-1.97	0.658151	1.000000
N	alternative_acceptor	IFRD1	chr7	+	chr7:112108171-112112219;chr7:112108171-112112273	chr7:112108171-112110953		chr7:112110954-112112219;chr7:112112220-112112273	chr7:112112219-112112220;chr7:112112273-112112274		4.23	0.00	3.12	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	3.03	0.00	0.00	1.22	2.86	0.00	0.00	0.00	2.53	0.00	4.71	3.57	4.55	NA	2.74	1.72	5.26	2.38	2.63	1.01	1.66	0.00	6.61	6.33	4.05	0.00	1.77	1.77	0.052703	0.570243
K	coord_cassette	MVB12A	chr19	+	chr19:17517106-17534306	chr19:17517106-17531121;chr19:17531221-17531346;chr19:17531444-17533140;chr19:17533268-17534306		chr19:17531122-17531220;chr19:17531347-17531443;chr19:17533141-17533267			90.00	100.00	100.00	NA	100.00	NA	100.00	100.00	88.24	NA	100.00	NA	100.00	100.00	87.50	NA	100.00	NA	100.00	87.50	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	77.78	88.24	NA	NA	NA	100.00	100.00	0.00	0.576145	0.751088
K	jcn_only_AA	RPS6KA1	chr1	+	chr1:26881230-26881674	chr1:26881230-26881641		chr1:26881642-26881674	chr1:26881674-26881675		100.00	100.00	99.16	NA	100.00	NA	98.77	100.00	100.00	98.91	100.00	99.03	100.00	100.00	97.73	95.56	96.97	100.00	93.33	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.29	100.00	100.00	100.00	97.33	100.00	100.00	0.00	0.289319	0.663989
N	jcn_only_AA	GTF2F2	chr13	+	chr13:45841512-45857576	chr13:45841512-45857556		chr13:45857557-45857576	chr13:45857576-45857577		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	GPS1	chr17	+	chr17:80013702-80013876				chr17:80013701-80013702;chr17:80013876-80013877		3.33	0.00	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	4.44	0.00	0.00	3.45	0.00	1.67	1.67	0.593091	1.000000
K	intron_retention		chr7	-	chr7:100887421-100888240				chr7:100887420-100887421;chr7:100888240-100888241		4.35	0.00	0.00	0.00	1.41	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	5.26	0.00	2.00	2.08	0.00	0.00	16.67	0.00	0.00	0.00	6.00	8.33	7.14	0.59	0.00	1.10	3.19	0.00	4.80	4.80	0.406278	1.000000
N	alternative_acceptor	RPL9	chr4	-	chr4:39456565-39458025;chr4:39456550-39458025	chr4:39456600-39458025		chr4:39456550-39456564;chr4:39456565-39456599	chr4:39456549-39456550;chr4:39456564-39456565		2.83	0.74	1.55	1.48	1.23	1.35	0.00	0.00	0.00	0.00	0.27	0.00	0.00	0.00	0.42	0.20	0.29	0.00	0.77	2.16	1.74	1.78	0.95	1.93	0.38	0.88	0.62	0.87	0.54	1.05	8.11	3.89	2.62	1.87	2.17	1.63	0.56	1.52	0.96	0.273239	0.709013
K	intron_retention	PTPRJ	chr11	+	chr11:48152269-48153062				chr11:48152268-48152269;chr11:48153062-48153063		8.77	6.90	10.26	2.17	5.00	2.44	NA	3.33	9.09	0.00	NA	9.09	NA	7.69	7.69	11.11	NA	NA	0.98	6.00	8.77	6.25	6.67	11.76	0.00	9.26	9.09	4.76	0.00	7.32	9.23	5.66	2.48	5.00	6.45	13.51	1.73	8.23	6.50	0.404020	1.000000
N	intron_retention		chr22	-	chr22:50962854-50968332				chr22:50962853-50962854;chr22:50968332-50968333		96.74	96.77	96.06	85.37	91.43	80.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.35	100.00	98.81	97.70	100.00	100.00	97.50	96.18	92.45	98.57	96.15	100.00	98.14	97.85	98.21	100.00	96.08	90.52	96.17	95.12	91.43	100.00	95.54	100.00	97.82	-2.18	0.884311	1.000000
K	alternative_first_exon	RHOG	chr11	-	chr11:3849437-3861378,chr11:3849437-3861991;chr11:3849437-3859033;chr11:3849437-3861797;chr11:3849437-3851757	chr11:3849437-3862123	chr11:3859034-3859097;chr11:3861798-3862072;chr11:3851758-3851881	chr11:3862124-3862213			98.11	92.21	97.16	100.00	93.15	100.00	96.76	97.88	97.37	96.63	96.55	92.28	97.06	98.92	97.32	96.39	96.48	97.94	90.32	96.03	97.62	93.75	92.67	90.52	95.65	97.03	97.02	97.83	94.37	95.71	96.88	96.64	96.15	95.95	94.95	94.24	95.90	97.45	1.55	0.057727	0.195102
N	jcn_only_AA	TYMP	chr22	-	chr22:50968045-50968332;chr22:50968177-50968332;chr22:50968149-50968332;chr22:50968184-50968332;chr22:50966175-50968332	chr22:50968161-50968332		chr22:50966175-50968044;chr22:50968045-50968148;chr22:50968149-50968160;chr22:50968161-50968176;chr22:50968177-50968183	chr22:50966174-50966175;chr22:50968044-50968045;chr22:50968148-50968149;chr22:50968160-50968161;chr22:50968176-50968177		30.46	40.50	33.63	25.00	29.55	30.06	16.54	18.38	17.70	17.63	24.27	18.20	19.07	19.74	19.15	18.23	19.33	18.35	35.00	28.68	24.43	29.95	31.25	30.57	32.76	29.44	28.76	27.86	26.09	24.96	31.91	28.81	36.13	30.96	36.18	33.21	33.88	29.06	-4.82	0.465712	0.727551
K	intron_retention	RAB11B	chr19	+	chr19:8467450-8468296				chr19:8467449-8467450;chr19:8468296-8468297		16.83	10.00	19.67	13.51	12.99	10.00	0.93	1.09	2.61	3.00	2.72	1.39	3.64	1.05	7.29	4.00	2.10	1.19	11.54	15.87	11.63	5.41	11.11	10.81	13.33	14.08	20.20	14.58	9.52	14.29	20.27	17.39	21.95	12.07	18.03	18.48	10.77	14.97	4.21	0.861544	1.000000
K	intron_retention	GBA	chr1	-	chr1:155204613-155205436				chr1:155204612-155204613;chr1:155205436-155205437		75.00	68.63	76.00	100.00	80.00	64.29	65.00	81.82	70.00	61.54	59.09	NA	78.26	76.47	72.41	83.33	69.23	NA	63.27	70.37	67.39	NA	70.59	70.00	80.95	84.62	76.47	75.00	90.00	100.00	70.27	82.76	69.23	83.33	76.92	73.68	68.93	75.73	6.80	0.675698	1.000000
N	jcn_only_AA	USP15	chr12	+	chr12:62785667-62786051	chr12:62785667-62786035		chr12:62786036-62786051	chr12:62786051-62786052		2.82	0.00	0.00	0.00	0.00	NA	0.00	1.32	1.89	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	8.33	1.35	0.00	3.57	0.00	5.77	NA	0.00	4.08	0.00	0.00	0.00	5.88	4.76	0.00	4.92	0.00	0.00	0.00	2.03	2.03	0.727602	0.877626
K	alternative_first_exon	RABGAP1L	chr1	+	chr1:174934123-174938413;chr1:174927311-174938413	chr1:174926687-174938413	chr1:174933905-174934122;chr1:174927028-174927310	chr1:174926594-174926686			2.44	0.00	NA	0.00	0.00	0.00	6.67	13.22	19.57	NA	9.09	28.95	NA	7.45	15.91	0.00	10.00	30.77	0.00	6.38	0.00	NA	NA	18.18	0.00	5.66	NA	0.00	0.00	0.76	3.64	NA	0.00	NA	NA	10.42	0.00	6.02	6.02	0.033042	0.133670
N	alternative_donor	GIMAP1-GIMAP5,GIMAP5	chr7	+	chr7:150434797-150437966;chr7:150437727-150437966	chr7:150437592-150437966		chr7:150434797-150437591;chr7:150437592-150437726	chr7:150434796-150434797;chr7:150437591-150437592		12.04	8.51	21.52	NA	NA	NA	1.75	2.86	3.45	3.45	0.00	0.00	1.64	4.38	5.13	2.13	0.00	0.00	10.00	19.67	5.88	20.00	22.22	16.67	6.67	18.93	19.05	7.14	7.14	8.33	16.36	32.47	8.33	31.25	13.33	38.10	7.50	14.20	6.70	0.101700	0.504121
N	alternative_acceptor	LIPA	chr10	-	chr10:90996409-91005432;chr10:91003499-91005432;chr10:90991789-91005432;chr10:90999843-91005432	chr10:90988156-91005432		chr10:90988156-90991788;chr10:90991789-90996408;chr10:90996409-90999842;chr10:90999843-91003498	chr10:90988155-90988156;chr10:90991788-90991789;chr10:90996408-90996409;chr10:90999842-90999843		100.00	100.00	100.00	NA	100.00	NA	99.96	100.00	100.00	99.96	99.84	99.96	100.00	100.00	100.00	100.00	99.93	100.00	100.00	100.00	100.00	100.00	99.86	100.00	100.00	100.00	100.00	100.00	99.73	100.00	100.00	100.00	93.75	99.88	99.81	99.93	100.00	100.00	0.00	0.359861	0.709013
N	alternative_acceptor	IFI44	chr1	+	chr1:79121197-79123641;chr1:79121197-79124996	chr1:79121197-79124555		chr1:79123642-79124555;chr1:79124556-79124996	chr1:79124555-79124556;chr1:79124996-79124997		0.46	7.50	9.76	5.26	0.00	0.00	0.00	0.36	0.57	2.94	0.00	0.00	0.00	0.00	0.51	0.80	0.00	0.00	NA	1.34	0.00	7.14	4.17	0.22	NA	0.21	5.56	0.51	0.00	0.00	0.54	0.50	0.00	3.77	5.26	0.20	0.00	0.41	0.41	0.513226	0.800638
N	alternative_donor	NUCB1	chr19	+	chr19:49425723-49425861	chr19:49425754-49425861		chr19:49425723-49425753	chr19:49425722-49425723		91.22	100.00	100.00	86.59	91.67	100.00	100.00	100.00	100.00	79.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.13	100.00	100.00	100.00	83.78	100.00	100.00	100.00	100.00	100.00	93.57	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.958758	0.985822
N	alternative_acceptor	METTL17	chr14	+	chr14:21464871-21464928;chr14:21464871-21464943	chr14:21464871-21464970		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		0.00	2.30	8.70	0.00	8.93	0.00	NA	NA	NA	NA	NA	NA	16.67	NA	NA	NA	0.00	NA	7.59	0.00	8.51	NA	10.81	NA	0.00	0.00	5.56	NA	0.00	NA	6.67	6.90	13.25	0.00	13.64	6.25	7.59	0.00	-7.59	0.128994	0.622567
K	intron_retention	GRB2	chr17	-	chr17:73314379-73314835				chr17:73314378-73314379;chr17:73314835-73314836		100.00	99.18	98.26	98.73	97.59	100.00	99.28	99.17	100.00	98.52	100.00	98.48	98.82	98.98	100.00	99.22	98.76	100.00	91.67	96.00	95.77	100.00	100.00	98.15	98.40	99.51	100.00	99.11	98.46	99.42	100.00	96.60	95.05	100.00	100.00	98.71	98.61	99.34	0.73	0.406953	1.000000
K	alternative_acceptor	PRKCSH	chr19	+	chr19:11558434-11558537	chr19:11558434-11558507		chr19:11558508-11558537	chr19:11558537-11558538		19.05	30.77	16.13	15.38	25.00	26.67	36.00	29.41	33.33	44.44	38.10	43.75	35.00	27.27	38.46	26.32	28.00	50.00	21.28	17.24	28.12	26.32	28.21	20.00	26.67	18.18	26.09	43.75	34.48	22.58	24.39	26.47	23.53	23.53	26.92	29.41	28.72	21.72	-7.00	0.081989	0.585944
K	intron_retention	YIF1B	chr19	-	chr19:38798162-38798236				chr19:38798161-38798162;chr19:38798236-38798237		8.77	7.34	4.62	1.82	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.86	7.32	4.40	0.00	3.95	2.56	4.92	6.25	2.47	0.00	1.12	0.00	11.11	13.04	7.91	0.00	2.82	1.14	4.89	6.79	1.89	0.906496	1.000000
K	jcn_only_AA	ADH5	chr4	-	chr4:100002572-100003125	chr4:100002604-100003125		chr4:100002572-100002603	chr4:100002571-100002572		100.00	92.31	100.00	NA	100.00	NA	99.15	100.00	98.41	94.74	99.17	100.00	99.11	100.00	100.00	100.00	98.10	100.00	NA	100.00	95.83	94.12	98.21	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.15	92.86	100.00	97.50	97.44	95.98	100.00	4.02	0.116403	0.663989
N	coord_cassette	AIP	chr11	+	chr11:67250729-67257508	chr11:67250729-67254476;chr11:67254657-67256737;chr11:67256927-67257508		chr11:67254477-67254656;chr11:67256738-67256926			100.00	100.00	95.77	100.00	95.95	89.47	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	98.96	100.00	100.00	100.00	100.00	97.44	100.00	88.89	100.00	100.00	100.00	100.00	100.00	100.00	97.26	100.00	97.67	98.75	94.74	100.00	97.78	100.00	100.00	100.00	0.00	0.953138	0.972993
N	alternative_acceptor	CYTH4,KCTD17	chr22	+	chr22:37707569-37708060;chr22:37707569-37708086	chr22:37707569-37708019		chr22:37708020-37708060;chr22:37708061-37708086	chr22:37708060-37708061;chr22:37708086-37708087		5.31	5.71	5.62	NA	8.82	NA	1.75	0.94	1.29	1.28	0.96	0.62	2.21	0.77	2.31	1.85	2.56	1.47	7.69	3.10	4.84	6.45	4.59	4.30	10.34	3.76	6.32	3.74	3.33	3.00	1.23	5.03	8.33	5.88	4.41	3.43	6.70	2.17	-4.54	0.062211	0.580561
K	alternative_first_exon	NDUFAF3	chr3	+	chr3:49058004-49059778	chr3:49058833-49059778,chr3:49059655-49059778,chr3:49059218-49059778	chr3:49057892-49058003	None			96.34	100.00	93.81	100.00	100.00	100.00	98.56	87.50	94.00	97.48	98.00	95.83	99.23	91.18	93.68	95.96	98.55	96.97	100.00	98.15	94.95	100.00	98.91	100.00	100.00	91.67	97.06	97.37	98.65	97.22	94.92	97.06	100.00	97.50	98.15	95.45	100.00	93.30	-6.70	0.010079	0.055464
K	intron_retention	POLR2A	chr17	+	chr17:7415664-7415795				chr17:7415663-7415664;chr17:7415795-7415796		6.02	5.88	7.02	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.41	2.70	0.00	0.00	NA	5.71	0.00	4.35	3.95	5.00	0.00	4.48	7.35	7.69	4.35	11.76	8.82	6.49	0.00	10.53	6.41	11.61	0.00	5.10	5.10	0.636555	1.000000
K	cassette	GK	chrX	+	chrX:30742299-30746848	chrX:30742299-30745582;chrX:30745670-30746848		chrX:30745583-30745669			3.62	0.00	2.26	4.35	2.50	4.78	9.09	9.60	5.85	10.11	5.88	10.62	8.33	15.38	8.33	8.93	8.70	20.25	0.00	3.94	1.55	5.06	4.88	4.76	0.00	4.10	3.28	7.44	7.32	10.27	1.68	1.17	0.00	1.75	1.92	2.33	0.00	4.02	4.02	0.240900	0.709176
N	alternative_donor		chr16	-	chr16:28117819-28118882	chr16:28117819-28118842		chr16:28118843-28118882	chr16:28118882-28118883		100.00	100.00	100.00	NA	100.00	NA	100.00	96.36	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	91.67	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.83	95.83	100.00	100.00	100.00	100.00	93.02	100.00	100.00	0.00	0.175914	0.563271
K	alternative_donor	C19orf25	chr19	-	chr19:1475258-1478772	chr19:1475258-1478652		chr19:1478653-1478772	chr19:1478772-1478773		NA	0.00	6.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	7.14	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	9.09	0.00	0.00	11.76	0.00	0.00	0.00	0.953064	0.984606
K	intron_retention		chr6	-	chr6:86386910-86387141				chr6:86386909-86386910;chr6:86387141-86387142		3.33	0.42	2.00	1.11	0.92	0.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.76	5.77	1.26	1.99	0.93	1.36	0.00	4.00	1.23	2.74	0.60	2.67	4.61	2.04	0.97	1.69	1.18	0.36	0.21	3.67	3.46	0.227166	1.000000
N	alternative_acceptor	CD300C	chr17	-	chr17:72539127-72540747	chr17:72539514-72540747		chr17:72539127-72539513	chr17:72539126-72539127		1.95	3.39	3.00	4.65	5.56	4.76	0.00	0.00	0.00	0.93	1.41	0.00	0.00	0.00	0.00	1.08	1.41	0.00	0.00	1.00	1.16	0.00	3.70	0.00	3.70	2.17	1.49	0.00	1.82	3.03	1.72	2.07	2.70	1.67	2.70	1.39	1.35	1.36	0.01	0.575269	0.839017
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134467571-134471684;chr9:134470294-134471684	chr9:134469358-134471684		chr9:134467571-134469357;chr9:134469358-134470293	chr9:134467570-134467571;chr9:134469357-134469358		2.33	0.00	2.04	NA	8.33	NA	0.00	1.00	0.86	0.00	0.47	0.00	0.00	0.00	0.71	0.00	0.53	1.25	NA	1.96	NA	2.04	2.59	1.61	5.88	1.43	1.25	0.00	1.45	0.00	4.17	1.92	NA	0.91	2.17	2.56	0.00	1.69	1.69	0.837875	0.941931
K	alternative_acceptor	CGRRF1	chr14	+	chr14:55004548-55004835	chr14:55004548-55004780		chr14:55004781-55004835	chr14:55004835-55004836		100.00	NA	100.00	NA	90.91	76.92	100.00	85.71	100.00	NA	85.71	NA	100.00	100.00	NA	90.91	92.86	100.00	100.00	85.00	100.00	NA	100.00	NA	NA	100.00	94.44	81.82	88.89	80.00	93.33	100.00	100.00	100.00	89.47	87.50	100.00	96.66	-3.34	0.096496	0.598353
N	alternative_acceptor	EWSR1,SGSM3	chr22	+	chr22:40803848-40804074	chr22:40803848-40803931		chr22:40803932-40804074	chr22:40804074-40804075		0.00	15.38	20.83	NA	10.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	11.43	8.33	7.14	NA	12.90	NA	11.76	30.00	19.05	0.00	7.14	6.67	16.67	8.33	7.69	8.33	6.25	23.53	9.56	8.33	-1.23	0.618376	0.854460
K	intron_retention	MTMR14	chr3	+	chr3:9729576-9730379				chr3:9729575-9729576;chr3:9730379-9730380		3.39	0.00	0.00	0.00	1.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.00	0.00	0.00	0.00	1.56	2.20	2.22	0.00	0.78	1.28	0.00	0.00	0.00	0.974587	1.000000
K	intron_retention	CARD19	chr9	+	chr9:95873004-95874160				chr9:95873003-95873004;chr9:95874160-95874161		10.13	10.09	15.07	0.00	6.83	6.06	0.00	0.00	1.64	2.13	1.11	0.00	2.27	1.06	1.23	0.00	3.51	0.00	4.23	7.45	3.12	6.82	10.24	6.90	6.25	6.90	21.43	5.77	9.27	5.13	5.10	11.58	4.72	7.50	6.25	2.60	4.47	6.00	1.53	0.948394	1.000000
K	intron_retention	ARGLU1	chr13	-	chr13:107209480-107211779				chr13:107209479-107209480;chr13:107211779-107211780		22.41	33.33	41.18	18.18	30.43	NA	11.11	7.14	5.17	4.21	8.43	1.61	18.00	6.98	17.65	6.98	12.50	1.82	27.27	22.45	29.41	22.22	29.58	23.44	NA	20.41	38.18	25.64	33.33	10.20	12.90	26.15	16.67	33.33	30.61	16.67	18.00	16.66	-1.34	0.811848	1.000000
N	cassette	TIMMDC1	chr3	+	chr3:119222869-119236051;chr3:119217775-119236051;chr3:119219708-119236051	chr3:119222869-119232487,chr3:119219708-119232487,chr3:119217775-119232487;chr3:119232567-119236051		chr3:119232488-119232566			91.38	100.00	98.51	88.89	100.00	100.00	100.00	100.00	89.66	100.00	100.00	96.43	100.00	100.00	90.62	100.00	98.21	100.00	100.00	98.11	98.44	100.00	96.39	100.00	100.00	90.48	96.43	100.00	100.00	100.00	93.33	91.57	98.00	94.29	98.18	96.00	100.00	95.72	-4.28	0.067769	0.622875
N	alternative_acceptor		chr3	+	chr3:52553581-52553928;chr3:52553581-52553793;chr3:52553581-52554026;chr3:52553581-52553796	chr3:52553581-52553959		chr3:52553794-52553796;chr3:52553797-52553928;chr3:52553929-52553959;chr3:52553960-52554026	chr3:52553796-52553797;chr3:52553928-52553929;chr3:52553959-52553960;chr3:52554026-52554027		94.61	96.04	93.94	95.83	96.06	100.00	98.56	98.86	100.00	100.00	99.46	100.00	98.33	100.00	100.00	100.00	98.77	100.00	98.15	95.79	89.47	98.61	94.72	97.66	96.47	97.73	92.21	98.28	95.94	99.42	100.00	100.00	93.75	97.63	94.93	97.12	97.31	98.30	0.98	0.443291	0.751374
N	alternative_acceptor		chr19	.	chr19:59061403-59061513;chr19:59061403-59061564	chr19:59061403-59061494		chr19:59061495-59061513;chr19:59061514-59061564	chr19:59061513-59061514;chr19:59061564-59061565		3.90	1.83	2.61	3.70	2.29	1.91	0.00	0.00	0.00	0.00	0.90	0.00	0.76	0.00	0.00	0.00	0.85	0.00	2.59	4.76	3.33	4.48	3.36	3.77	2.11	2.63	2.38	1.67	2.59	3.53	8.54	4.88	4.01	1.67	2.70	2.82	1.97	3.26	1.29	0.356666	0.709013
N	jcn_only_AA	UBAC2	chr13	+	chr13:100020161-100021616;chr13:100020161-100037481	chr13:100020161-100029171		chr13:100021617-100029171;chr13:100029172-100037481	chr13:100029171-100029172;chr13:100037481-100037482		0.00	0.00	0.00	NA	4.55	NA	0.00	0.00	0.00	20.69	0.00	26.42	2.17	0.00	0.00	12.50	0.00	34.38	0.00	0.00	0.00	10.00	0.00	18.18	NA	0.00	0.00	0.00	0.00	35.71	0.00	2.17	0.00	5.26	5.00	15.38	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr17	+	chr17:46053020-46053234				chr17:46053019-46053020;chr17:46053234-46053235		61.84	68.18	73.47	57.58	65.85	43.33	6.98	7.14	9.09	2.27	5.00	0.00	17.31	16.67	23.08	7.89	4.26	0.00	68.25	60.34	53.97	47.50	65.88	53.49	76.83	42.86	69.23	45.00	59.04	38.00	75.61	74.68	58.18	65.91	67.14	52.17	63.18	51.60	-11.58	0.983286	1.000000
K	intron_retention	LGALS2	chr22	-	chr22:37966420-37966582				chr22:37966419-37966420;chr22:37966582-37966583		7.69	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4.00	8.33	NA	NA	0.00	NA	4.44	5.08	NA	0.00	0.00	0.00	6.25	NA	0.00	NA	NA	NA	2.00	6.25	4.25	0.957531	1.000000
K	intron_retention	IMPDH2	chr3	-	chr3:49062012-49062091				chr3:49062011-49062012;chr3:49062091-49062092		13.33	1.00	9.09	6.10	4.17	3.12	0.00	NA	0.00	0.00	0.00	NA	1.45	NA	0.00	1.69	1.82	7.14	1.09	23.53	3.57	11.76	7.50	8.33	0.47	5.26	5.00	6.45	11.11	11.76	8.70	14.29	2.92	4.88	6.38	10.00	1.04	11.02	9.97	0.113231	1.000000
N	alternative_acceptor	CCDC107	chr9	+	chr9:35660856-35660936;chr9:35660856-35660974	chr9:35660856-35660946		chr9:35660937-35660946;chr9:35660947-35660974	chr9:35660946-35660947;chr9:35660974-35660975		1.82	0.56	2.27	2.50	0.83	1.23	0.00	0.00	5.26	0.00	0.00	0.00	3.33	3.03	3.70	0.00	0.00	NA	0.53	2.86	1.35	6.67	1.32	0.00	0.44	6.25	1.82	3.70	1.39	4.17	2.38	2.70	0.51	3.12	2.38	3.45	0.52	2.62	2.10	0.095644	0.598353
N	cassette	MCMBP	chr10	-	chr10:121591613-121596407	chr10:121591613-121595051;chr10:121595217-121596407		chr10:121595052-121595216			96.49	100.00	90.14	100.00	100.00	85.19	97.83	100.00	100.00	94.23	98.04	96.88	96.83	92.11	100.00	100.00	94.64	100.00	100.00	92.00	93.94	97.62	100.00	98.21	100.00	97.44	95.00	100.00	96.08	95.24	92.86	97.73	91.67	94.87	98.08	100.00	98.91	94.67	-4.24	0.205071	0.709176
N	coord_cassette	ZBTB8OS	chr1	-	chr1:33097481-33100368	chr1:33097481-33099245;chr1:33099329-33099551;chr1:33099674-33100368		chr1:33099246-33099328;chr1:33099552-33099673			100.00	91.18	96.30	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention	OTUB1	chr11	+	chr11:63764121-63764328				chr11:63764120-63764121;chr11:63764328-63764329		22.83	15.69	25.64	21.74	16.47	24.32	3.36	2.50	4.31	4.55	2.78	4.17	2.91	5.21	10.00	3.03	2.50	2.22	15.62	22.39	18.10	21.74	13.83	24.00	14.63	15.52	19.23	14.29	18.18	19.12	26.53	29.31	23.88	14.29	17.50	18.95	15.12	18.95	3.83	0.860291	1.000000
K	intron_retention		chr11	-	chr11:64896187-64897200				chr11:64896186-64896187;chr11:64897200-64897201		8.70	0.00	10.00	NA	0.00	NA	0.00	0.00	0.00	4.55	3.03	0.00	0.00	5.00	8.33	0.00	0.00	0.00	NA	5.00	0.00	9.09	13.04	13.04	NA	0.00	11.43	NA	0.00	0.00	0.00	10.53	0.00	0.00	10.00	6.90	0.00	2.50	2.50	0.413762	1.000000
N	cassette	GAK	chr4	-	chr4:861221-864498	chr4:861221-862326;chr4:862474-864498		chr4:862327-862473			69.77	68.92	75.25	86.36	91.18	75.00	94.23	95.29	88.89	100.00	100.00	100.00	95.31	97.67	87.34	95.83	93.10	89.29	68.75	79.10	79.41	82.61	87.67	86.27	72.73	85.45	82.14	80.00	80.00	83.78	80.95	87.50	70.37	80.77	75.29	80.00	71.55	83.20	11.65	0.371757	0.709176
N	alternative_acceptor	AP5Z1	chr7	+	chr7:4825316-4825880	chr7:4825316-4825631		chr7:4825632-4825880	chr7:4825880-4825881		11.11	3.23	5.56	12.50	8.33	NA	0.00	0.00	0.00	2.78	0.00	0.00	0.00	1.89	2.22	0.00	4.65	0.00	0.00	7.27	4.55	5.71	4.84	5.56	9.09	9.52	6.52	3.23	6.25	2.78	13.21	12.90	4.76	16.33	8.51	8.57	1.61	8.39	6.78	0.132084	0.629354
K	intron_retention	MRFAP1	chr4	+	chr4:6642882-6642953				chr4:6642881-6642882;chr4:6642953-6642954		90.16	91.82	93.38	87.18	84.34	75.00	92.91	91.85	92.86	94.19	92.95	91.50	90.85	91.38	90.20	91.03	90.34	90.71	92.11	91.15	90.59	92.13	84.62	87.21	100.00	90.37	90.73	100.00	86.13	83.90	93.40	93.10	90.70	80.53	78.79	81.13	91.97	91.27	-0.70	0.559115	1.000000
N	jcn_only_AD	IFRD1	chr7	+	chr7:112108171-112112273;chr7:112108137-112112273	chr7:112111089-112112273		chr7:112108137-112108170;chr7:112108171-112111088	chr7:112108136-112108137;chr7:112108170-112108171		1.45	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	6.17	6.38	7.95	8.47	8.70	NA	2.78	8.06	7.69	0.00	7.50	1.99	5.29	3.45	5.04	1.33	7.84	0.00	1.72	1.72	0.268289	0.657607
K	jcn_only_AA	HPS1	chr10	-	chr10:100205162-100206563	chr10:100205171-100206563		chr10:100205162-100205170	chr10:100205161-100205162		89.74	100.00	96.00	NA	NA	NA	95.10	93.18	94.00	100.00	93.33	92.73	93.33	95.38	100.00	93.33	100.00	91.89	80.00	93.02	85.71	90.91	94.81	100.00	NA	95.65	89.19	92.31	95.65	88.89	88.00	92.68	NA	91.53	96.67	92.54	94.22	93.10	-1.12	0.935392	0.978889
K	alternative_acceptor	NUDT21	chr16	-	chr16:56468742-56473568	chr16:56473409-56473568		chr16:56468742-56473408	chr16:56468741-56468742		0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	6.25	4.35	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.832699	0.940678
K	jcn_only_AA	CTB-50L17.10	chr19	+	chr19:4501330-4501925	chr19:4501330-4501922		chr19:4501923-4501925	chr19:4501925-4501926		74.47	63.64	69.57	70.00	70.45	66.15	67.57	79.17	82.35	73.33	75.76	NA	72.97	79.17	72.73	68.75	67.86	NA	66.67	55.88	71.43	70.00	73.68	NA	71.33	65.71	71.43	64.71	67.35	78.57	64.29	64.20	68.00	55.00	62.50	75.86	67.78	70.09	2.31	0.738217	0.883015
K	intron_retention		chr7	+	chr7:150773274-150773373				chr7:150773273-150773274;chr7:150773373-150773374		3.20	5.05	2.69	4.26	4.37	2.65	0.00	1.95	0.88	0.00	0.00	0.00	0.00	1.90	0.86	1.12	0.99	0.00	2.67	4.35	3.91	3.49	3.21	5.36	5.47	1.62	2.75	3.42	5.08	2.52	4.39	5.88	6.59	3.42	3.90	2.22	3.86	2.58	-1.28	0.872441	1.000000
N	alternative_acceptor	GRK6	chr5	+	chr5:176860678-176860914	chr5:176860678-176860856		chr5:176860857-176860914	chr5:176860914-176860915		0.00	8.33	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	5.88	2.70	NA	NA	0.00	1.82	0.00	0.00	NA	0.00	4.35	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.391002	0.709013
K	jcn_only_AA	DGKZ	chr11	+	chr11:46388950-46389204	chr11:46388950-46389201		chr11:46389202-46389204	chr11:46389204-46389205		91.18	100.00	97.26	NA	100.00	NA	98.67	96.00	96.88	100.00	100.00	100.00	95.29	93.94	97.37	95.45	96.88	100.00	NA	100.00	NA	100.00	100.00	88.89	100.00	100.00	97.62	NA	96.30	NA	100.00	100.00	NA	93.33	100.00	96.00	99.34	98.00	-1.34	0.413965	0.687781
N	cassette	SH3BP2	chr4	+	chr4:2826487-2828956;chr4:2826458-2828956	chr4:2826487-2826852,chr4:2826458-2826852;chr4:2826924-2828956		chr4:2826853-2826923			71.88	73.53	76.36	NA	92.86	NA	100.00	100.00	100.00	100.00	98.28	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	87.10	100.00	93.55	93.75	97.30	100.00	93.10	84.85	100.00	93.94	100.00	84.62	88.46	NA	87.80	80.56	97.62	100.00	90.10	-9.90	0.507070	0.788365
N	jcn_only_AD	PLGRKT	chr9	-	chr9:5436695-5437922;chr9:5436695-5437788;chr9:5436695-5437631	chr9:5436695-5438212		chr9:5437632-5437788;chr9:5437789-5437922;chr9:5437923-5438212	chr9:5437788-5437789;chr9:5437922-5437923;chr9:5438212-5438213		10.26	10.00	10.60	24.00	0.00	25.00	0.00	6.25	14.12	0.00	2.33	6.48	0.00	9.88	15.84	0.00	0.00	4.55	0.00	10.88	16.47	17.02	0.00	20.00	NA	5.00	9.55	0.00	0.00	0.00	10.89	13.61	0.00	10.26	11.54	11.02	0.00	10.07	10.07	0.022258	0.350473
N	cassette	GLMP	chr1	-	chr1:156263001-156263808;chr1:156263001-156263780	chr1:156263001-156263110;chr1:156263368-156263808,chr1:156263368-156263780		chr1:156263111-156263367			93.22	87.50	90.83	90.00	91.13	89.36	96.70	97.96	96.36	97.65	97.91	98.54	97.16	97.52	93.14	96.84	96.43	97.50	89.17	93.86	95.58	94.19	92.03	93.86	92.25	97.06	94.44	95.38	93.46	97.13	96.21	86.81	88.10	92.36	89.78	92.17	90.71	96.63	5.92	0.067851	0.622875
N	jcn_only_AA	GALNS	chr16	-	chr16:88880934-88884414	chr16:88883826-88884414		chr16:88880934-88883825	chr16:88880933-88880934		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.88	2.27	3.92	0.00	0.00	9.68	0.00	0.00	0.00	5.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.182109	0.663989
N	cassette	UBE2R2	chr9	+	chr9:33900270-33917015	chr9:33900270-33911961;chr9:33912097-33917015		chr9:33911962-33912096			96.55	100.00	90.36	NA	100.00	NA	93.06	96.67	93.02	94.37	95.41	100.00	93.75	90.74	92.65	96.23	100.00	100.00	NA	91.89	92.59	90.00	100.00	88.24	NA	90.48	100.00	100.00	93.75	96.15	91.89	92.86	100.00	98.53	96.23	93.48	96.88	91.89	-4.98	0.159238	0.709176
K	intron_retention	CSK	chr15	+	chr15:75090654-75090955				chr15:75090653-75090654;chr15:75090955-75090956		1.35	0.00	1.92	NA	3.85	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	2.27	0.00	6.25	1.22	0.00	0.00	1.45	0.00	1.41	4.55	3.23	1.56	2.54	0.00	1.61	0.95	-0.66	0.231982	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7127178-7127286				chr17:7127177-7127178;chr17:7127286-7127287		73.17	50.00	65.62	93.33	96.08	100.00	NA	NA	NA	NA	20.00	0.00	8.33	NA	30.00	23.08	20.00	0.00	19.23	51.72	34.48	84.62	84.78	75.00	80.00	62.50	80.00	62.50	78.79	64.71	50.00	51.85	54.55	80.95	76.00	75.00	50.00	57.11	7.11	0.198055	1.000000
N	alternative_acceptor	NFKB2	chr10	+	chr10:104160249-104160411;chr10:104160249-104160423	chr10:104160249-104160389		chr10:104160390-104160411;chr10:104160412-104160423	chr10:104160411-104160412;chr10:104160423-104160424		5.56	3.85	4.55	7.47	6.94	7.46	2.63	0.71	0.61	1.01	1.92	1.27	0.00	0.65	1.70	1.04	2.74	1.34	7.69	4.24	2.70	8.97	8.25	7.48	13.33	2.67	4.29	5.41	9.80	6.59	3.87	4.78	7.89	6.99	5.65	5.41	5.77	3.27	-2.50	0.204125	0.668672
K	intron_retention	TSC2	chr16	+	chr16:2136381-2136732				chr16:2136380-2136381;chr16:2136732-2136733		5.88	0.00	5.41	0.00	6.90	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	5.26	3.03	6.25	8.82	0.00	0.00	3.45	0.00	NA	13.33	NA	0.00	5.17	0.00	0.00	4.55	5.41	0.00	4.36	4.36	0.348330	1.000000
N	jcn_only_AA		chr3	+	chr3:49753444-49753546	chr3:49753444-49753534		chr3:49753535-49753546	chr3:49753546-49753547		86.67	100.00	100.00	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	87.50	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	87.50	90.62	100.00	100.00	100.00	100.00	100.00	87.50	-12.50	0.057927	0.663989
N	jcn_only_AA	SPTLC2	chr14	-	chr14:78015225-78018438;chr14:77987959-78018438	chr14:77987925-78018438		chr14:77987925-77987958;chr14:77987959-78015224	chr14:77987924-77987925;chr14:77987958-77987959		100.00	89.47	100.00	NA	NA	NA	100.00	99.43	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.393938	0.665929
K	intron_retention	HSP90B1	chr12	+	chr12:104337098-104337515				chr12:104337097-104337098;chr12:104337515-104337516		1.56	1.22	3.59	8.49	2.36	7.27	0.55	0.00	0.00	1.54	1.28	2.46	1.03	0.55	2.39	0.48	0.35	1.23	0.93	2.12	1.67	8.54	2.69	9.30	0.00	2.55	2.16	8.59	4.42	9.15	1.90	1.38	0.86	4.59	4.13	6.75	0.90	1.73	0.83	0.592066	1.000000
N	alternative_donor	MRPL14	chr6	-	chr6:44084367-44095080;chr6:44084367-44093689;chr6:44084367-44094991	chr6:44084367-44094369		chr6:44093690-44094369;chr6:44094370-44094991;chr6:44094992-44095080	chr6:44094369-44094370;chr6:44094991-44094992;chr6:44095080-44095081		0.00	0.00	2.04	0.00	0.00	0.00	0.00	2.78	1.35	6.67	0.00	11.32	0.00	3.03	1.35	1.00	0.00	6.98	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	2.63	0.00	0.00	1.20	0.00	2.44	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.175181	0.563271
N	cassette	HNRNPC	chr14	-	chr14:21731496-21737456;chr14:21731496-21736781	chr14:21731496-21731825;chr14:21731989-21736781,chr14:21731989-21737456		chr14:21731826-21731988			9.35	1.39	12.95	2.27	3.33	6.67	3.10	20.86	20.70	5.42	4.77	6.99	3.71	25.17	23.39	5.49	4.71	6.10	0.00	16.67	2.50	6.93	3.87	9.68	NA	17.44	9.72	3.41	2.26	4.49	10.20	11.32	5.00	8.43	5.08	10.38	3.10	17.05	13.96	0.001656	0.134160
K	cassette	VDAC3	chr8	+	chr8:42252652-42256229	chr8:42252652-42254195;chr8:42254199-42256229		chr8:42254196-42254198			14.29	33.33	21.95	NA	27.59	NA	4.14	1.96	5.36	8.43	9.24	4.17	3.75	0.00	1.39	6.11	5.22	0.00	NA	13.89	10.00	34.48	33.08	23.53	NA	2.70	13.04	13.46	10.98	6.90	14.29	23.73	41.18	17.89	30.36	21.35	18.73	8.29	-10.44	0.286374	0.709176
K	cassette	BBIP1	chr10	-	chr10:112661371-112677878	chr10:112661371-112667437;chr10:112667595-112677878		chr10:112667438-112667594			5.26	NA	8.00	NA	7.14	NA	0.00	0.00	2.86	22.73	3.45	16.67	5.26	2.17	5.88	7.69	4.00	11.76	NA	4.35	10.00	8.33	0.00	0.00	0.00	4.17	5.26	5.88	9.52	4.35	0.00	0.00	0.00	0.00	3.57	0.00	0.00	3.17	3.17	0.437655	0.743097
N	alternative_acceptor	SUGP1	chr19	-	chr19:19390200-19390993	chr19:19390328-19390993		chr19:19390200-19390327	chr19:19390199-19390200		2.17	0.00	0.00	5.26	2.63	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	2.00	1.89	0.00	2.44	0.00	2.08	0.00	0.00	0.00	3.45	0.00	0.00	1.09	1.56	0.00	3.45	0.00	0.78	0.00	-0.78	0.723596	0.896493
K	intron_retention	CCDC159	chr19	+	chr19:11462650-11462732				chr19:11462649-11462650;chr19:11462732-11462733		13.64	0.00	12.20	17.65	8.33	5.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	15.38	NA	0.00	0.00	4.35	9.09	7.50	NA	8.70	NA	10.53	7.14	15.38	0.00	0.00	4.00	0.00	12.90	0.00	0.00	10.00	0.00	0.00	8.12	8.12	0.609842	1.000000
K	alternative_acceptor	KCTD13	chr16	-	chr16:29917888-29922298	chr16:29918430-29922298		chr16:29917888-29918429	chr16:29917887-29917888		94.59	91.18	96.00	90.32	90.24	86.67	100.00	100.00	88.89	100.00	85.00	100.00	100.00	100.00	94.87	100.00	95.24	NA	88.46	96.55	87.50	93.55	92.50	94.12	78.26	100.00	93.48	93.10	96.55	100.00	93.94	97.92	100.00	100.00	100.00	100.00	95.59	98.28	2.69	0.275827	0.709013
N	cassette	DHX58	chr17	-	chr17:40254331-40256783;chr17:40254310-40256783	chr17:40254310-40255625,chr17:40254331-40255625;chr17:40255817-40256783		chr17:40255626-40255816			90.07	92.00	77.42	81.82	75.00	89.73	94.74	94.88	94.71	89.47	NA	97.41	100.00	94.04	94.27	87.50	NA	97.98	73.33	88.81	89.47	66.67	83.33	89.14	100.00	90.08	86.96	82.14	75.00	94.04	86.36	82.86	70.00	71.43	NA	91.67	93.37	90.07	-3.30	0.688817	0.885445
K	alternative_acceptor	NEU1	chr6	-	chr6:31827956-31828215	chr6:31828042-31828215		chr6:31827956-31828041	chr6:31827955-31827956		94.79	94.32	96.93	97.14	96.77	NA	97.30	95.98	96.72	97.06	98.54	100.00	98.06	96.91	95.83	95.19	98.54	98.59	100.00	95.36	95.54	97.40	97.70	100.00	100.00	95.76	97.37	97.14	97.78	98.08	95.00	93.89	94.44	96.74	96.15	96.58	97.68	95.56	-2.12	0.163932	0.660713
N	jcn_only_AA	HIAT1,NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236380;chr1:41235088-41236383	chr1:41235088-41236068		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		21.05	9.09	17.78	11.11	8.33	5.88	13.46	35.71	13.89	18.33	14.29	28.57	10.61	33.33	15.38	20.90	15.22	20.00	3.23	18.42	8.11	26.09	7.79	21.88	0.00	6.25	9.62	11.76	16.87	12.50	4.76	8.00	4.76	13.21	15.00	15.87	6.92	19.73	12.81	0.058904	0.663989
K	cassette	SMARCA4	chr19	+	chr19:11144194-11144798	chr19:11144194-11144442;chr19:11144542-11144798		chr19:11144443-11144541			0.00	3.45	5.56	0.00	4.17	9.09	7.89	0.00	9.09	5.13	7.14	4.00	1.85	5.56	4.76	5.13	5.88	3.70	5.56	5.26	6.06	0.00	7.50	5.88	0.00	0.00	6.52	3.45	3.03	0.00	6.67	10.34	0.00	4.35	3.23	5.88	2.65	2.63	-0.02	0.911574	0.974942
N	jcn_only_AD	SHISA5,SNX4	chr3	-	chr3:125188364-125195538	chr3:125188364-125189409		chr3:125189410-125195538	chr3:125195538-125195539		9.09	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	10.34	0.00	0.00	3.23	0.00	7.14	4.35	NA	0.00	0.00	0.00	0.00	7.69	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.236444	0.657607
K	intron_retention	SCYL1	chr11	+	chr11:65305352-65305437				chr11:65305351-65305352;chr11:65305437-65305438		4.62	3.64	1.82	1.61	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.87	1.92	2.46	5.56	0.00	6.12	0.00	0.00	0.00	0.00	2.99	0.00	9.72	7.59	4.81	0.00	4.55	4.76	0.43	0.96	0.52	0.727342	1.000000
K	alternative_last_exon	PRKACA	chr19	-	chr19:14203656-14218159	chr19:14217701-14218159	chr19:14202848-14203655	chr19:14217572-14217700			24.14	9.18	25.95	0.00	3.49	NA	37.93	40.51	43.06	36.23	40.53	38.74	37.77	40.28	39.13	34.74	36.93	40.70	4.08	17.86	4.35	26.67	21.49	17.65	14.29	32.31	21.37	20.51	13.71	9.09	9.68	21.35	4.17	27.47	24.82	23.44	11.73	28.23	16.49	0.274975	0.491468
K	jcn_only_AD	DGCR2,ZMAT5	chr22	-	chr22:30144561-30162937	chr22:30144561-30162860		chr22:30162861-30162937	chr22:30162937-30162938		38.89	60.00	63.89	NA	56.67	NA	41.67	46.15	45.45	23.53	36.11	36.36	31.11	21.05	63.16	15.38	28.57	NA	42.86	27.78	32.35	NA	44.44	NA	31.58	16.00	48.00	NA	37.14	33.33	36.84	41.67	41.94	NA	26.32	50.00	41.80	32.31	-9.49	0.132645	0.657607
K	cassette	DUSP3	chr17	-	chr17:41847183-41852079	chr17:41847183-41851402;chr17:41851478-41852079		chr17:41851403-41851477			0.00	8.33	0.00	0.00	6.25	4.17	0.00	1.28	1.14	3.57	1.05	1.96	2.06	0.00	2.35	2.13	1.43	4.35	5.88	0.00	0.00	2.94	0.00	0.00	NA	0.00	0.00	2.86	0.00	5.00	0.00	3.70	0.00	3.45	0.00	1.49	2.06	0.00	-2.06	0.141531	0.709176
K	intron_retention	SPSB3	chr16	-	chr16:1827445-1827747				chr16:1827444-1827445;chr16:1827747-1827748		15.62	8.14	26.32	6.67	2.50	0.00	0.00	0.00	0.00	NA	5.00	NA	6.67	5.26	6.45	10.00	16.67	NA	3.64	25.00	9.09	NA	14.29	9.09	11.67	0.00	20.59	9.09	4.17	14.29	11.43	12.96	9.62	6.67	33.33	9.09	7.41	8.34	0.94	0.890451	1.000000
K	intron_retention	MEPCE	chr7	+	chr7:100029313-100030541				chr7:100029312-100029313;chr7:100030541-100030542		5.26	0.00	6.17	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	3.23	0.00	9.30	3.64	0.00	0.00	7.50	2.86	0.00	0.00	0.00	8.89	6.76	7.14	3.85	5.77	7.14	0.00	4.25	4.25	0.419907	1.000000
N	cassette	CAPG	chr2	-	chr2:85625276-85626258;chr2:85622750-85626258	chr2:85622750-85625812,chr2:85625276-85625812;chr2:85625906-85626258		chr2:85625813-85625905			98.35	96.50	96.04	94.89	97.49	94.95	99.40	99.82	100.00	99.35	99.45	99.48	99.43	99.41	100.00	98.92	99.13	99.22	98.38	98.31	98.67	97.73	97.77	97.30	98.35	98.47	98.23	98.06	98.74	98.29	97.45	97.85	97.38	98.22	98.49	97.37	98.36	98.41	0.05	0.514429	0.792802
K	cassette	CLN3	chr16	-	chr16:28489199-28493425	chr16:28489199-28490964;chr16:28491087-28493425		chr16:28490965-28491086			4.67	5.04	3.33	5.13	4.76	5.36	1.69	6.06	0.00	0.00	2.63	0.00	3.70	3.57	0.00	2.86	0.00	0.00	4.92	3.77	2.78	4.76	3.45	11.11	7.19	11.76	2.17	8.11	3.28	10.00	9.09	6.45	5.45	5.71	3.08	6.19	4.98	5.37	0.38	0.270711	0.709176
K	intron_retention	SLC39A13	chr11	+	chr11:47437048-47437875				chr11:47437047-47437048;chr11:47437875-47437876		89.52	83.61	92.31	86.18	82.87	80.34	96.23	92.65	100.00	97.44	100.00	90.91	96.72	98.85	100.00	100.00	93.22	86.67	83.87	90.00	86.59	91.46	87.88	95.12	76.98	91.67	91.43	89.71	88.66	88.24	86.27	90.08	76.02	89.62	91.18	92.68	83.74	90.84	7.09	0.591689	1.000000
K	alternative_last_exon	ANKDD1A,ISG20	chr15	+	chr15:65242194-65249441	chr15:65242194-65243168	chr15:65249442-65249801	chr15:65243169-65243476			85.71	98.88	85.11	100.00	98.85	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100.00	73.33	98.59	93.33	97.30	NA	98.77	85.00	78.38	95.00	94.00	93.33	85.00	86.21	100.00	77.78	91.43	80.00	99.44	85.00	-14.44	0.009902	0.161746
K	intron_retention	NUMA1	chr11	-	chr11:71714585-71714932				chr11:71714584-71714585;chr11:71714932-71714933		1.20	2.12	6.45	0.00	1.67	0.00	1.75	1.67	4.35	2.99	3.61	0.00	3.16	0.00	5.56	3.33	2.38	2.67	2.80	11.11	3.23	5.45	8.11	1.05	2.34	1.23	2.22	3.92	3.00	1.67	1.52	4.24	0.91	6.00	5.19	3.39	2.23	1.38	-0.85	0.897810	1.000000
K	intron_retention		chr14	+	chr14:104151374-104151974				chr14:104151373-104151374;chr14:104151974-104151975		14.29	25.71	47.83	12.50	17.24	12.50	NA	20.00	13.33	NA	14.29	NA	8.33	15.38	35.71	5.56	18.18	NA	6.38	11.11	6.38	23.08	25.00	41.67	27.78	25.00	18.75	16.67	12.50	9.09	5.56	20.00	10.00	38.10	30.00	32.35	10.00	14.84	4.84	0.491325	1.000000
N	intron_retention		chr1	+	chr1:22963196-22964082				chr1:22963195-22963196;chr1:22964082-22964083		5.88	0.00	NA	0.00	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	10.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.832419	1.000000
K	jcn_only_AD	HMGA1	chr6	+	chr6:34208660-34210488	chr6:34208693-34210488		chr6:34208660-34208692	chr6:34208659-34208660		56.67	80.00	62.50	75.00	75.81	NA	68.87	72.31	66.67	71.52	71.26	71.54	71.64	70.13	67.47	71.12	72.29	72.25	NA	61.29	76.19	68.87	72.09	70.93	78.95	71.05	60.87	73.27	70.81	80.56	66.67	52.00	NA	65.96	69.47	76.92	75.30	68.40	-6.89	0.054977	0.533406
N	alternative_acceptor		chr5	+	chr5:132435345-132437483	chr5:132435345-132437450		chr5:132437451-132437483	chr5:132437483-132437484		91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	94.74	98.15	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.190520	0.660713
K	alternative_donor	ORMDL1,SNRNP200	chr2	-	chr2:190636629-190640290	chr2:190636629-190638612		chr2:190638613-190640290	chr2:190640290-190640291		3.57	0.00	4.41	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.52	0.00	2.44	0.00	2.17	2.50	2.00	0.00	0.00	3.23	0.00	4.55	2.78	5.26	0.00	3.70	3.28	0.00	0.00	0.00	0.00	1.61	0.00	5.88	4.44	3.03	0.00	1.61	1.61	0.169651	0.563271
N	cassette	YIPF3	chr6	-	chr6:43480613-43481096;chr6:43480613-43481325	chr6:43480613-43480806;chr6:43480837-43481096,chr6:43480837-43481325		chr6:43480807-43480836			94.34	100.00	95.24	93.33	83.33	86.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	96.55	100.00	95.35	98.25	94.74	95.00	95.83	94.44	90.28	100.00	94.29	90.24	94.55	100.00	97.67	-2.33	0.077152	0.641134
N	cassette	TCF25	chr16	+	chr16:89967203-89972601	chr16:89967203-89970525;chr16:89970614-89972601		chr16:89970526-89970613			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AA	CCDC130	chr19	+	chr19:13869825-13869913;chr19:13869825-13869930	chr19:13869825-13869924		chr19:13869914-13869924;chr19:13869925-13869930	chr19:13869924-13869925;chr19:13869930-13869931		0.00	6.25	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	6.25	0.00	NA	0.00	NA	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000
N	cassette	COMMD3,COMMD3-BMI1	chr10	+	chr10:22607098-22607586;chr10:22607098-22607581	chr10:22607098-22607200;chr10:22607236-22607581,chr10:22607236-22607586		chr10:22607201-22607235			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	94.74	98.21	100.00	97.96	100.00	100.00	95.24	100.00	NA	100.00	95.65	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	92.31	97.96	100.00	96.55	100.00	100.00	100.00	100.00	0.00	0.276218	0.709176
N	alternative_donor	CLASRP	chr19	+	chr19:45571313-45571677;chr19:45571379-45571677	chr19:45571317-45571677		chr19:45571313-45571316;chr19:45571317-45571378	chr19:45571312-45571313;chr19:45571316-45571317		64.71	70.87	65.62	64.29	70.21	69.23	NA	NA	36.36	20.00	25.00	NA	35.29	54.55	42.11	21.43	16.67	NA	67.16	62.96	52.38	41.67	53.12	66.67	70.83	57.89	54.84	53.85	37.50	55.56	74.19	61.90	75.56	53.85	66.67	61.76	70.83	62.96	-7.87	0.897411	0.977754
N	jcn_only_AD	EIF2B4	chr2	-	chr2:27590069-27590288;chr2:27590069-27590323	chr2:27590069-27591520					0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_last_exon	CIRBP	chr19	+	chr19:1272051-1273487,chr19:1272051-1273649,chr19:1272051-1274312;chr19:1272051-1272425;chr19:1272051-1277181	chr19:1272051-1273599,chr19:1272051-1273492	chr19:1272426-1273171;chr19:1277182-1277298	chr19:1273600-1273714			2.91	3.78	3.20	2.99	2.04	1.64	0.61	0.50	2.18	0.00	0.70	0.00	0.00	1.44	2.71	0.40	0.62	0.99	5.46	2.53	4.52	2.16	3.27	3.98	1.68	3.29	6.64	4.26	2.89	3.41	2.51	4.10	3.69	2.38	4.37	4.25	2.69	2.52	-0.17	0.733348	0.829196
K	jcn_only_AA	SGSH	chr17	-	chr17:78188479-78188831;chr17:78188583-78188831	chr17:78188565-78188831		chr17:78188479-78188564;chr17:78188565-78188582	chr17:78188478-78188479;chr17:78188564-78188565		100.00	100.00	100.00	NA	NA	NA	97.44	100.00	100.00	100.00	95.24	94.44	100.00	100.00	100.00	96.15	100.00	100.00	NA	96.00	NA	NA	95.65	100.00	100.00	95.45	94.44	NA	100.00	NA	90.91	94.12	NA	100.00	100.00	95.65	100.00	98.00	-2.00	0.203574	0.663989
K	jcn_only_AA	PCBP2,RP11-793H13.8	chr12	+	chr12:53854928-53856276	chr12:53854928-53856264		chr12:53856265-53856276	chr12:53856276-53856277		66.50	61.31	70.33	75.81	62.05	69.57	46.70	48.31	47.54	48.80	46.08	47.32	45.56	46.78	47.04	47.73	48.20	47.39	64.18	66.67	59.05	66.84	66.34	67.57	60.00	68.54	69.36	60.66	60.26	68.34	71.05	66.99	57.14	71.43	71.76	67.35	58.57	66.59	8.02	0.339330	0.663989
K	alternative_acceptor	SIPA1L3,TBC1D17	chr19	+	chr19:50391092-50391487	chr19:50391092-50391413		chr19:50391414-50391487	chr19:50391487-50391488		23.53	0.93	28.00	11.54	11.11	11.76	4.00	81.82	46.15	NA	13.33	NA	6.25	93.33	68.97	NA	10.53	NA	7.95	28.57	12.50	NA	23.33	36.36	7.07	71.43	13.89	16.67	10.00	NA	5.13	7.89	7.69	NA	25.00	32.26	6.66	50.00	43.34	0.028242	0.546324
N	alternative_acceptor	PFKL	chr21	+	chr21:45739299-45739966	chr21:45739299-45739933		chr21:45739934-45739966	chr21:45739966-45739967		4.35	4.35	7.55	0.00	2.70	NA	0.81	0.00	1.52	1.12	0.68	0.00	0.68	1.23	2.26	0.90	1.42	0.00	6.25	1.96	1.85	3.12	7.04	3.03	10.00	4.76	5.36	3.03	1.45	3.03	0.00	6.06	3.33	3.17	3.75	2.41	3.84	1.59	-2.25	0.227705	0.681180
K	cassette	EIF4H	chr7	+	chr7:73604249-73609070	chr7:73604249-73604576;chr7:73604637-73609070		chr7:73604577-73604636			3.95	5.41	4.55	NA	17.65	NA	6.36	11.70	9.70	33.03	22.50	29.49	9.09	12.87	9.39	36.61	25.70	33.33	NA	3.80	0.00	23.14	11.70	20.38	0.00	4.41	3.03	22.50	15.04	19.40	4.55	2.94	NA	17.69	12.57	13.50	5.88	4.48	-1.40	0.537021	0.809056
K	mutually_exclusive	ERMARD	chr6	+	chr6:170176162-170176550,chr6:170176770-170179277	chr6:170176162-170176429,chr6:170176508-170179277	chr6:170176551-170176769	chr6:170176430-170176507			0.00	0.00	0.00	NA	0.00	0.00	NA	NA	0.00	NA	NA	NA	0.00	NA	NA	NA	NA	NA	3.92	0.00	3.57	NA	5.00	NA	0.00	0.00	4.35	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.510003
N	jcn_only_AA	ORC4	chr2	-	chr2:148695772-148695866;chr2:148695783-148695866	chr2:148695775-148695866		chr2:148695772-148695774;chr2:148695775-148695782	chr2:148695771-148695772;chr2:148695774-148695775		0.00	0.00	0.00	NA	6.67	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.67	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	NA	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention	RHOT2	chr16	+	chr16:722182-722253				chr16:722181-722182;chr16:722253-722254		11.11	3.81	10.53	9.52	6.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.76	10.00	5.00	4.23	7.69	0.00	4.00	1.64	0.00	0.00	0.00	17.78	10.59	7.81	2.13	6.25	5.66	0.00	7.55	7.55	0.229109	1.000000
K	intron_retention	EVL	chr14	+	chr14:100604140-100607516				chr14:100604139-100604140;chr14:100607516-100607517		16.13	11.34	NA	0.00	11.63	0.00	2.75	1.89	2.44	4.00	5.26	0.00	3.88	2.63	NA	0.00	7.69	0.00	10.00	9.52	8.82	9.09	19.74	0.00	11.45	6.25	0.00	18.18	15.12	7.14	8.33	NA	3.75	14.29	14.89	11.11	6.94	7.29	0.35	0.530900	1.000000
N	jcn_only_AA	AOAH	chr7	-	chr7:36568121-36570023;chr7:36564906-36570023;chr7:36567958-36570023;chr7:36568829-36570023	chr7:36561722-36570023		chr7:36561722-36564905;chr7:36564906-36567957;chr7:36567958-36568120;chr7:36568121-36568828	chr7:36561721-36561722;chr7:36564905-36564906;chr7:36567957-36567958;chr7:36568120-36568121		93.94	93.78	92.93	95.35	95.77	95.21	98.82	97.65	97.42	100.00	98.88	100.00	96.15	94.59	95.45	100.00	100.00	100.00	93.92	87.80	94.39	100.00	95.04	93.94	100.00	98.36	92.65	100.00	100.00	97.62	97.56	89.15	89.17	92.17	89.91	92.54	95.03	96.08	1.04	0.889706	0.960400
N	cassette	DNAJC4	chr11	+	chr11:63999437-64001365;chr11:63998413-64001365	chr11:63998413-64000175,chr11:63999437-64000175;chr11:64000338-64001365		chr11:64000176-64000337			100.00	100.00	100.00	93.94	95.65	95.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.34	100.00	100.00	100.00	93.02	100.00	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	94.81	100.00	100.00	91.18	100.00	100.00	0.00	0.182572	0.709176
K	intron_retention		chrX	+	chrX:30739113-30742217				chrX:30739112-30739113;chrX:30742217-30742218		3.14	0.00	3.14	3.09	0.00	1.63	0.00	1.32	0.00	3.51	0.00	1.03	0.00	1.47	1.64	0.00	0.00	0.00	5.26	2.40	2.98	3.33	0.00	2.08	0.00	1.55	2.63	1.89	3.23	3.70	1.97	1.88	5.00	5.79	5.56	3.52	0.00	1.76	1.76	0.834133	1.000000
K	intron_retention	NAA60	chr16	+	chr16:3535062-3535466				chr16:3535061-3535062;chr16:3535466-3535467		20.83	21.43	23.53	NA	19.23	NA	15.09	10.00	14.89	20.83	24.19	25.71	23.40	11.36	23.81	26.19	19.67	24.00	15.38	11.36	25.00	20.00	21.43	28.57	31.25	10.00	22.22	21.05	16.67	22.22	20.00	31.15	31.58	28.89	31.48	23.21	22.41	11.36	-11.05	0.127372	1.000000
N	alternative_acceptor		chr11	+	chr11:64974291-64975529;chr11:64974291-64975438	chr11:64974291-64975525		chr11:64975439-64975525;chr11:64975526-64975529	chr11:64975525-64975526;chr11:64975529-64975530		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.74	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.707177	0.890280
K	cassette	UROD	chr1	+	chr1:45479464-45480110	chr1:45479464-45479580;chr1:45479743-45480110		chr1:45479581-45479742			94.87	97.12	100.00	100.00	92.00	100.00	96.88	100.00	100.00	97.30	95.24	100.00	98.59	100.00	98.33	97.26	100.00	100.00	100.00	100.00	97.33	100.00	100.00	100.00	88.24	100.00	100.00	100.00	96.97	100.00	100.00	100.00	94.90	96.55	95.77	95.89	97.00	100.00	3.00	0.134452	0.709176
N	jcn_only_AA	STUB1	chr16	+	chr16:730685-731298;chr16:730685-731208;chr16:730685-731437;chr16:730685-732019;chr16:730685-731062;chr16:730685-731066	chr16:730685-731151					100.00	95.70	100.00	100.00	93.33	93.75	98.77	100.00	100.00	94.87	100.00	100.00	98.67	100.00	95.65	98.18	93.62	95.00	98.41	94.12	95.00	100.00	96.30	100.00	100.00	96.00	100.00	100.00	96.36	100.00	96.97	100.00	98.41	100.00	100.00	100.00	98.54	98.48	-0.05	0.696818	0.866530
N	alternative_acceptor	SLC16A3	chr17	+	chr17:80195770-80196577;chr17:80195770-80196686	chr17:80195770-80218774		chr17:80196578-80196686;chr17:80196687-80218774	chr17:80196686-80196687;chr17:80218774-80218775		39.36	47.12	44.95	27.50	32.71	27.03	0.00	0.00	10.81	4.17	0.00	18.18	0.00	0.00	2.70	6.67	0.00	NA	21.82	15.91	26.27	10.00	24.05	30.77	16.98	17.39	17.05	7.14	7.27	11.11	37.93	42.05	41.38	14.63	19.64	28.12	19.40	16.65	-2.75	0.801893	0.926022
K	intron_retention		chr11	+	chr11:46399780-46400006				chr11:46399779-46399780;chr11:46400006-46400007		3.03	0.88	6.02	0.00	4.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.88	2.56	0.00	8.33	0.00	2.33	2.08	3.53	0.00	3.77	NA	0.00	6.76	2.11	3.45	2.63	0.00	0.44	1.04	0.60	0.602288	1.000000
N	jcn_only_AD	GIMAP1-GIMAP5,GIMAP5	chr7	+	chr7:150437592-150437966;chr7:150437727-150437966	chr7:150434797-150437966		chr7:150434797-150437591;chr7:150437592-150437726	chr7:150434796-150434797;chr7:150437591-150437592		93.02	100.00	98.25	NA	NA	NA	100.00	89.47	90.32	96.55	100.00	100.00	100.00	91.07	88.10	100.00	100.00	80.00	NA	90.91	100.00	91.67	92.86	100.00	100.00	88.51	90.38	97.44	100.00	91.67	95.65	92.31	100.00	90.00	100.00	80.00	100.00	90.99	-9.01	0.000452	0.060858
N	jcn_only_AD	MYL6	chr12	+	chr12:56552496-56553406;chr12:56548977-56553406	chr12:56548949-56553406		chr12:56548949-56548976;chr12:56548977-56552495	chr12:56548948-56548949;chr12:56548976-56548977		0.00	0.00	0.00	0.00	2.35	0.00	1.64	0.00	0.00	1.92	1.67	5.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	PLXND1	chr3	-	chr3:129279567-129280642	chr3:129279567-129280488;chr3:129280553-129280642		chr3:129280489-129280552			100.00	97.42	98.63	NA	100.00	NA	100.00	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	98.03	100.00	97.92	98.51	98.84	100.00	100.00	100.00	93.33	96.00	94.44	98.91	99.31	98.36	98.96	99.34	0.38	0.931090	0.982460
K	cassette	CD151	chr11	+	chr11:836443-837249	chr11:836443-836768;chr11:836844-837249		chr11:836769-836843			94.25	92.68	96.47	97.50	96.03	100.00	100.00	100.00	100.00	100.00	98.94	100.00	99.70	100.00	100.00	100.00	100.00	100.00	95.56	92.68	96.15	95.59	95.20	95.00	88.24	98.75	95.50	99.07	97.80	100.00	97.62	92.45	94.83	98.33	95.80	96.21	95.19	98.19	2.99	0.377193	0.709410
K	cassette	NSA2	chr5	+	chr5:74066636-74072428	chr5:74066636-74069692;chr5:74069886-74072428		chr5:74069693-74069885			100.00	100.00	100.00	100.00	96.32	96.15	98.78	100.00	96.00	100.00	97.92	100.00	98.04	100.00	100.00	99.12	98.26	100.00	97.14	100.00	95.65	100.00	98.90	96.55	98.53	100.00	100.00	95.74	100.00	100.00	88.89	100.00	98.46	95.08	100.00	96.36	98.50	100.00	1.50	0.862501	0.951806
K	intron_retention		chr17	+	chr17:40717066-40717244				chr17:40717065-40717066;chr17:40717244-40717245		2.13	4.23	10.26	5.00	6.52	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	2.50	1.49	5.00	4.88	3.03	0.00	0.00	2.04	0.00	1.64	1.94	6.67	7.27	5.45	0.00	3.23	3.17	2.12	1.06	-1.05	0.657572	1.000000
K	intron_retention	REC8	chr14	+	chr14:24649113-24649215				chr14:24649112-24649113;chr14:24649215-24649216		22.58	19.44	17.86	33.33	18.52	17.86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21.05	25.58	19.12	35.29	22.22	27.78	5.13	17.14	25.86	40.00	NA	37.93	21.92	15.09	12.12	25.00	15.79	30.00	15.78	22.25	6.47	0.568178	1.000000
N	alternative_acceptor	INTS9	chr8	-	chr8:28627265-28627405;chr8:28625894-28627405	chr8:28625840-28627405		chr8:28625840-28625893;chr8:28625894-28627264	chr8:28625839-28625840;chr8:28625893-28625894		91.30	96.67	91.67	NA	100.00	NA	100.00	92.31	100.00	94.74	97.37	NA	95.24	100.00	93.33	100.00	96.30	NA	100.00	95.00	95.24	92.86	96.77	NA	100.00	95.65	95.00	94.12	94.12	100.00	95.45	95.24	95.83	95.00	95.24	94.44	98.34	95.22	-3.11	0.084554	0.585944
N	jcn_only_AA	CNOT10	chr3	+	chr3:32806302-32809497;chr3:32806302-32806541	chr3:32806302-32811378					100.00	100.00	90.48	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	92.86	NA	100.00	NA	100.00	84.62	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	95.45	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	alternative_first_exon	RPS27A	chr2	+	chr2:55452380-55459943;chr2:55459245-55459943	chr2:55459845-55459943	chr2:55459039-55459244	chr2:55459538-55459844			100.00	99.22	98.36	100.00	98.94	100.00	99.09	100.00	100.00	99.17	98.46	98.04	98.43	88.24	98.44	98.43	100.00	100.00	100.00	100.00	99.02	100.00	99.24	100.00	100.00	94.74	100.00	98.95	99.15	99.07	97.14	98.78	100.00	100.00	98.36	98.57	99.61	98.57	-1.04	0.206225	0.414000
N	alternative_acceptor	STAT1	chr2	-	chr2:191824794-191839555;chr2:191835444-191839555	chr2:191836147-191839555		chr2:191824794-191835443;chr2:191835444-191836146	chr2:191824793-191824794;chr2:191835443-191835444		0.61	6.25	2.50	4.76	6.67	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.29	0.68	2.38	0.00	0.00	1.10	NA	0.72	0.00	1.72	0.00	1.20	1.11	1.06	14.29	1.92	0.00	1.32	6.25	0.65	-5.61	0.114229	0.605363
K	intron_retention		chr12	-	chr12:7531895-7548690				chr12:7531894-7531895;chr12:7548690-7548691		3.19	0.00	4.88	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.16	NA	0.00	0.73	1.45	0.00	0.00	0.00	0.00	0.00	6.25	0.00	6.25	NA	0.00	1.06	3.25	0.00	0.00	0.00	0.486557	1.000000
K	cassette	CYB561D2	chr3	+	chr3:50388992-50390671	chr3:50388992-50389439;chr3:50389478-50390671		chr3:50389440-50389477			92.00	100.00	81.25	NA	86.96	NA	97.87	93.75	97.14	87.50	89.66	NA	94.64	91.18	95.35	92.50	78.38	NA	92.31	81.82	78.95	NA	81.82	NA	100.00	100.00	90.48	92.86	88.00	80.00	93.75	88.00	85.71	81.25	88.24	71.43	96.25	92.88	-3.38	0.383711	0.709410
K	jcn_only_AA	ALYREF	chr17	-	chr17:79846460-79847057	chr17:79846866-79847057		chr17:79846460-79846865	chr17:79846459-79846460		2.99	2.19	2.30	1.51	0.93	2.36	0.00	2.27	0.00	2.56	0.52	0.92	1.23	0.00	1.20	1.48	0.33	0.00	1.59	1.45	1.37	0.57	0.00	3.36	0.00	6.67	2.56	1.22	2.30	0.00	6.17	6.86	0.64	3.91	1.99	2.37	0.94	2.63	1.69	0.087549	0.663989
K	alternative_last_exon	LAMP2	chrX	-	chrX:119567898-119575584;chrX:119562482-119575584;chrX:119565318-119575584	chrX:119573149-119575584	chrX:119561682-119562481;chrX:119564681-119565317	chrX:119570349-119573148			22.34	8.04	21.33	9.09	10.19	6.74	34.88	45.00	37.87	35.71	36.14	33.89	45.86	50.54	45.27	46.74	47.32	42.75	7.87	24.62	9.39	20.59	18.04	21.86	7.39	27.95	21.67	28.33	23.68	21.10	11.00	12.50	6.04	20.07	18.98	17.78	7.96	26.29	18.33	0.232352	0.449786
K	intron_retention	EXOC3	chr5	+	chr5:462423-464404				chr5:462422-462423;chr5:464404-464405		5.13	0.00	2.86	0.00	0.00	NA	0.00	0.00	0.00	4.76	2.17	NA	2.13	0.00	0.00	0.00	0.00	0.00	5.41	6.67	3.45	7.69	4.84	0.00	0.00	11.90	0.00	0.00	0.00	0.00	9.68	6.25	3.33	0.00	3.51	15.38	1.06	5.90	4.84	0.634435	1.000000
N	intron_retention		chr19	+	chr19:18288103-18288482				chr19:18288102-18288103;chr19:18288482-18288483		85.71	93.24	84.38	100.00	96.88	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	90.91	77.78	88.37	NA	100.00	NA	100.00	100.00	100.00	NA	75.00	100.00	92.86	85.45	93.51	100.00	84.38	100.00	93.38	89.28	-4.09	0.832883	1.000000
K	intron_retention	TYK2	chr19	-	chr19:10463775-10464203				chr19:10463774-10463775;chr19:10464203-10464204		17.14	8.54	29.21	16.67	16.67	0.00	1.89	0.00	1.85	3.45	0.00	3.23	5.00	6.52	6.59	0.00	4.84	0.00	10.81	22.41	12.33	27.78	33.82	11.54	30.77	15.56	16.36	12.50	17.39	13.04	15.38	18.45	5.66	22.58	23.53	13.46	7.10	15.47	8.37	0.991319	1.000000
N	alternative_acceptor	AHSA2	chr2	+	chr2:61413633-61415043;chr2:61413633-61413751	chr2:61413633-61413793		chr2:61413752-61413793;chr2:61413794-61415043	chr2:61413793-61413794;chr2:61415043-61415044		3.85	1.72	2.56	3.12	4.08	1.92	NA	NA	NA	NA	NA	NA	9.09	NA	NA	NA	NA	NA	5.17	5.56	2.27	7.69	3.23	7.14	0.00	0.00	2.56	0.00	0.00	0.00	4.17	2.50	1.61	4.00	0.00	13.04	1.72	4.01	2.29	0.953130	0.990505
K	intron_retention	MTCH1	chr6	-	chr6:36936751-36937814				chr6:36936750-36936751;chr6:36937814-36937815		7.51	1.89	10.05	5.41	5.81	3.57	1.32	1.05	1.45	2.24	1.58	1.35	0.50	2.18	3.91	3.61	2.51	1.28	2.82	4.74	3.40	6.35	7.53	7.01	20.59	7.50	8.02	7.43	5.46	4.46	4.55	4.46	4.08	6.44	6.44	5.49	2.35	4.64	2.29	0.515529	1.000000
K	alternative_first_exon	ASAH1	chr8	-	chr8:17933097-17933685,chr8:17933097-17940580,chr8:17933097-17940630,chr8:17933097-17941407,chr8:17933097-17941425,chr8:17933097-17941449,chr8:17933097-17942095;chr8:17933097-17942184	chr8:17933097-17941489	chr8:17942185-17942494	chr8:17941490-17941879			94.74	97.50	96.30	100.00	97.96	NA	96.94	98.21	96.41	98.22	96.54	98.05	96.59	96.77	96.84	97.63	96.83	98.18	100.00	96.88	100.00	99.39	98.77	99.20	NA	98.77	97.75	98.29	98.38	100.00	98.08	97.65	100.00	97.75	98.13	98.84	97.50	97.48	-0.02	0.341486	0.536334
K	intron_retention		chr16	+	chr16:28843721-28843816				chr16:28843720-28843721;chr16:28843816-28843817		7.32	0.00	3.30	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.00	0.00	2.08	1.54	0.00	0.00	0.00	0.00	2.17	NA	4.76	4.69	2.44	0.00	0.00	0.00	0.500042	1.000000
K	jcn_only_AD	CDC27,SDF2	chr17	-	chr17:26982502-26989063	chr17:26982502-26988743		chr17:26988744-26989063	chr17:26989063-26989064		93.29	90.43	90.20	77.78	86.05	73.08	73.53	87.50	82.57	51.72	58.75	45.00	74.32	84.62	81.40	58.11	55.38	42.86	92.31	93.23	91.00	75.64	83.70	75.41	100.00	93.42	92.86	80.36	77.65	74.07	97.24	96.26	93.44	83.91	84.44	89.11	91.37	93.26	1.89	0.412658	0.675468
N	jcn_only_AD		chr4	-	chr4:85599433-85600056;chr4:85599433-85600099	chr4:85599433-85600071		chr4:85600057-85600071;chr4:85600072-85600099	chr4:85600071-85600072;chr4:85600099-85600100		97.87	100.00	96.36	NA	NA	NA	100.00	93.10	100.00	NA	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	96.67	100.00	100.00	0.00	0.915997	0.958435
N	jcn_only_AA	ARRDC1	chr9	+	chr9:140509453-140509505;chr9:140509453-140509525	chr9:140509453-140509548		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		46.43	26.05	19.23	20.83	15.94	29.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	33.33	38.46	13.51	25.00	18.42	NA	18.71	28.57	12.50	0.00	0.00	13.33	47.37	43.75	34.44	0.00	38.89	14.29	22.38	33.52	11.13	0.480992	0.740602
K	intron_retention		chr2	-	chr2:37439183-37439477				chr2:37439182-37439183;chr2:37439477-37439478		0.00	9.80	5.26	2.38	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.27	0.00	0.00	4.48	5.71	1.79	0.00	0.00	4.35	2.04	3.85	0.00	0.00	3.92	0.00	4.76	1.61	3.28	0.00	0.00	0.00	0.505583	1.000000
N	alternative_donor	DCTN1	chr2	-	chr2:74592369-74592664;chr2:74592369-74592641	chr2:74592369-74592636		chr2:74592637-74592641;chr2:74592642-74592664	chr2:74592641-74592642;chr2:74592664-74592665		2.50	3.33	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	4.55	0.00	3.33	7.14	2.08	3.12	0.00	0.00	2.38	3.45	0.00	2.94	2.78	6.67	0.00	3.77	1.96	3.28	0.00	0.00	0.00	0.679206	0.860941
K	intron_retention		chr8	-	chr8:144696624-144696793				chr8:144696623-144696624;chr8:144696793-144696794		15.00	21.43	26.92	NA	27.78	NA	0.00	7.69	6.67	3.70	4.00	0.00	6.00	NA	11.11	6.25	2.22	0.00	11.11	12.50	10.71	36.36	30.43	20.00	NA	15.38	25.00	15.38	21.05	8.33	21.74	33.33	19.23	9.09	18.18	11.11	11.11	15.00	3.89	0.760434	1.000000
N	cassette	PLXNB2	chr22	-	chr22:50727572-50745981;chr22:50729027-50745981	chr22:50729027-50733147,chr22:50727572-50733147;chr22:50733208-50745981		chr22:50733148-50733207			100.00	100.00	79.17	NA	NA	NA	86.67	81.08	80.95	100.00	100.00	NA	100.00	100.00	100.00	95.24	88.57	NA	NA	95.65	NA	NA	100.00	NA	100.00	76.92	76.19	NA	100.00	NA	NA	86.21	NA	100.00	93.33	100.00	100.00	95.65	-4.35	0.351282	0.709176
K	intron_retention	U2AF1,U2AF1L5	chr21	-	chr21:44513360-44514580				chr21:44513359-44513360;chr21:44514580-44514581		9.62	4.88	8.96	3.14	2.34	2.60	0.00	2.22	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	2.50	2.21	5.36	5.38	4.24	1.49	2.83	2.86	0.00	3.85	1.46	2.31	1.56	7.79	6.25	4.67	3.66	2.83	4.85	2.54	3.79	1.25	0.765829	1.000000
N	jcn_only_AA	ATP13A1	chr19	-	chr19:19756376-19756455;chr19:19756321-19756455	chr19:19756342-19756455		chr19:19756321-19756341;chr19:19756342-19756375	chr19:19756320-19756321;chr19:19756341-19756342		98.72	100.00	100.00	98.21	96.04	93.94	100.00	100.00	98.73	95.24	97.22	100.00	100.00	100.00	96.81	100.00	92.11	100.00	98.49	100.00	100.00	100.00	96.61	96.43	98.05	96.77	93.88	95.24	100.00	96.74	100.00	96.92	99.29	97.44	98.00	100.00	99.65	100.00	0.35	0.931700	0.977987
K	alternative_donor	LILRB1	chr19	+	chr19:55144696-55145088	chr19:55144770-55145088		chr19:55144696-55144769	chr19:55144695-55144696		93.17	100.00	92.42	NA	NA	NA	100.00	94.55	96.34	90.72	98.25	91.67	100.00	94.86	100.00	96.72	100.00	92.45	100.00	91.35	91.49	83.33	100.00	82.14	100.00	93.97	93.81	100.00	100.00	81.37	93.66	94.40	81.82	90.00	90.48	87.90	100.00	93.81	-6.19	0.319363	0.650093
K	cassette	PHYKPL	chr5	-	chr5:177641887-177649355	chr5:177641887-177642276;chr5:177642432-177649355		chr5:177642277-177642431			88.89	80.95	84.85	NA	81.25	NA	93.33	95.00	90.91	NA	84.62	NA	100.00	96.67	94.44	86.67	88.24	NA	84.62	76.92	87.50	NA	88.89	90.00	100.00	94.74	84.62	NA	81.82	100.00	90.00	88.89	NA	83.33	75.00	92.86	93.33	92.37	-0.96	0.781330	0.934744
K	intron_retention		chr11	-	chr11:62457994-62458083				chr11:62457993-62457994;chr11:62458083-62458084		2.97	3.25	5.17	1.23	3.53	1.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.08	6.56	2.65	2.70	3.80	4.76	2.79	0.00	3.28	0.00	0.00	1.35	10.48	8.55	5.62	2.41	2.56	2.75	2.94	1.49	-1.45	0.893672	1.000000
N	cassette	PITHD1	chr1	+	chr1:24112270-24113764	chr1:24112270-24112804;chr1:24112914-24113764		chr1:24112805-24112913			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	89.19	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	CDC37	chr19	-	chr19:10506020-10506110				chr19:10506019-10506020;chr19:10506110-10506111		2.39	0.00	2.39	3.48	2.13	1.02	0.86	0.93	2.52	2.27	1.96	2.42	1.99	2.48	5.43	4.38	3.77	1.40	0.93	2.15	4.53	2.60	3.67	2.54	2.60	2.26	2.73	5.38	7.72	6.04	4.07	3.06	4.13	1.80	2.08	1.62	1.46	2.33	0.87	0.724521	1.000000
N	cassette	C17orf49	chr17	+	chr17:6919845-6920579;chr17:6920005-6920579;chr17:6919845-6920575;chr17:6920005-6920575	chr17:6920005-6920268,chr17:6919845-6920268;chr17:6920334-6920575,chr17:6920334-6920579		chr17:6920269-6920333			63.21	73.39	64.52	65.87	69.74	69.40	89.13	87.50	84.88	75.00	91.38	83.33	96.15	87.23	80.00	84.31	83.05	88.57	79.17	78.22	77.39	61.11	75.45	79.31	89.35	84.29	74.10	81.58	82.02	82.98	75.00	75.47	71.59	67.74	73.91	77.55	84.15	81.25	-2.90	0.498993	0.782590
N	alternative_acceptor	MCOLN1	chr19	+	chr19:7595388-7598408	chr19:7595388-7598154		chr19:7598155-7598408	chr19:7598408-7598409		2.27	5.75	6.52	0.00	2.35	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	0.00	0.00	2.76	2.22	2.74	4.88	4.55	0.00	6.17	2.44	2.08	0.00	2.27	0.00	4.76	4.65	4.21	2.27	3.57	0.00	3.48	2.25	-1.24	0.331324	0.709013
K	cassette	MPP1	chrX	-	chrX:154014676-154033546	chrX:154014676-154018228;chrX:154018298-154033546		chrX:154018229-154018297			100.00	100.00	95.56	100.00	98.46	NA	97.22	100.00	100.00	98.44	97.01	93.75	96.92	96.77	95.00	96.55	97.12	95.51	NA	95.45	100.00	96.88	100.00	97.22	100.00	100.00	100.00	100.00	99.42	98.75	97.62	100.00	100.00	100.00	100.00	98.63	100.00	98.81	-1.19	0.641404	0.868138
K	jcn_only_AD	SLCO2B1	chr11	+	chr11:74811901-74873699	chr11:74862443-74873699		chr11:74811901-74862442	chr11:74811900-74811901		100.00	100.00	100.00	NA	NA	NA	95.22	93.38	97.22	76.03	90.40	76.14	96.45	92.17	100.00	80.52	93.98	71.43	NA	97.06	NA	83.33	93.33	67.74	100.00	80.95	98.25	58.82	86.76	NA	NA	100.00	NA	72.55	89.53	82.93	98.22	93.38	-4.84	0.193250	0.657607
N	jcn_only_AA	ITFG1	chr16	-	chr16:47249121-47252778;chr16:47196513-47252778	chr16:47196576-47252778		chr16:47196513-47196575;chr16:47196576-47249120	chr16:47196512-47196513;chr16:47196575-47196576		94.44	98.61	96.30	92.86	95.35	NA	94.74	98.04	95.59	94.59	94.03	93.18	94.52	96.97	98.33	93.75	93.75	90.24	95.83	94.34	98.36	100.00	96.72	100.00	100.00	95.08	95.35	100.00	97.62	95.83	95.74	97.33	93.10	95.65	93.48	95.24	95.28	95.41	0.12	0.775369	0.900689
N	alternative_acceptor	SYNGAP1	chr6	+	chr6:170713690-170714630	chr6:170713690-170713850		chr6:170713851-170714630	chr6:170714630-170714631		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	96.15	NA	100.00	100.00	100.00	NA	100.00	NA	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	cassette	ARHGAP9	chr12	-	chr12:57866472-57867824	chr12:57866472-57867385;chr12:57867492-57867824		chr12:57867386-57867491			64.52	55.70	73.97	75.00	56.10	54.55	73.91	NA	60.00	NA	85.00	NA	70.37	54.55	NA	NA	70.83	NA	68.33	77.78	64.00	NA	76.00	NA	64.56	71.43	61.82	53.33	68.85	NA	61.54	70.45	61.36	65.00	64.10	72.00	66.44	64.52	-1.92	0.958644	0.988542
K	cassette	COX20	chr1	+	chr1:244999059-245005496	chr1:244999059-245005245;chr1:245005361-245005496		chr1:245005246-245005360			68.42	36.00	64.71	71.43	62.96	52.63	42.86	52.63	46.15	46.97	54.00	50.00	47.54	52.94	61.29	55.41	56.52	48.00	40.74	31.58	46.15	67.57	65.62	62.96	26.67	72.73	56.25	46.15	48.28	52.94	22.22	42.11	28.57	61.29	63.33	60.00	38.37	52.78	14.41	0.184380	0.709176
K	intron_retention		chr3	+	chr3:49719401-49719780				chr3:49719400-49719401;chr3:49719780-49719781		3.85	2.67	3.33	0.00	3.03	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	3.45	0.00	2.13	0.00	0.00	6.90	4.08	0.00	2.78	6.45	0.00	0.00	0.00	0.980254	1.000000
N	cassette	EIF3I	chr1	+	chr1:32691922-32694099;chr1:32690077-32694099	chr1:32690077-32692003,chr1:32691922-32692003;chr1:32692132-32694099		chr1:32692004-32692131			96.05	100.00	98.04	96.36	95.35	100.00	99.29	98.28	98.13	100.00	98.76	100.00	100.00	98.04	97.17	99.48	98.51	100.00	94.59	93.55	95.95	96.74	97.32	100.00	100.00	95.08	100.00	98.94	99.01	99.09	92.45	90.53	95.45	96.69	97.00	97.26	99.65	95.56	-4.08	0.089114	0.652861
K	intron_retention	CDC25B	chr20	+	chr20:3784185-3785215				chr20:3784184-3784185;chr20:3785215-3785216		0.00	0.00	3.57	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.25	3.12	0.00	NA	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.795414	1.000000
K	cassette	SETX	chr9	-	chr9:135140373-135145001	chr9:135140373-135144789;chr9:135144877-135145001		chr9:135144790-135144876			19.61	17.65	25.58	NA	35.71	NA	8.33	24.44	20.00	25.00	20.93	27.03	13.51	29.27	33.33	18.18	18.18	32.35	16.67	19.15	18.75	16.67	11.43	18.18	NA	24.07	27.78	26.32	20.00	33.33	24.24	20.45	0.00	35.48	25.00	26.32	13.51	24.16	10.65	0.015326	0.369835
N	jcn_only_AA	CCDC130	chr19	+	chr19:13869825-13869930;chr19:13869825-13869924	chr19:13869825-13869913		chr19:13869914-13869924;chr19:13869925-13869930	chr19:13869924-13869925;chr19:13869930-13869931		90.00	93.75	93.33	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	80.00	87.50	100.00	NA	91.67	NA	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.879505	0.954010
K	intron_retention	AP1G2	chr14	-	chr14:24031276-24031496				chr14:24031275-24031276;chr14:24031496-24031497		13.33	0.00	36.36	NA	NA	NA	0.00	0.00	3.12	0.00	9.09	0.00	3.23	0.00	7.27	NA	0.00	NA	10.00	21.43	7.14	NA	22.22	NA	0.00	21.43	21.43	NA	13.64	NA	16.67	15.15	NA	23.08	35.29	26.92	0.00	15.00	15.00	0.215450	1.000000
K	jcn_only_AA	SIL1	chr5	-	chr5:138456860-138463427	chr5:138456863-138463427		chr5:138456860-138456862	chr5:138456859-138456860		100.00	100.00	96.61	100.00	96.43	NA	96.50	96.49	95.93	96.88	94.69	96.51	95.96	94.29	96.55	97.50	95.00	95.00	100.00	97.14	94.34	100.00	93.75	100.00	100.00	97.50	91.84	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	93.48	100.00	97.32	-2.68	0.350571	0.663989
K	coord_cassette	TYK2	chr19	-	chr19:10461645-10464717	chr19:10461645-10463601;chr19:10463775-10464203;chr19:10464323-10464717		chr19:10463602-10463774;chr19:10464204-10464322			88.00	84.38	85.71	NA	85.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	73.33	84.21	91.67	NA	80.00	90.00	NA	100.00	100.00	NA	93.33	NA	93.33	93.55	83.33	90.00	87.50	100.00	84.38	96.66	12.28	0.343610	0.643829
K	alternative_acceptor	PPP6R2,TOM1	chr22	+	chr22:35719171-35719511	chr22:35719171-35719488		chr22:35719489-35719511	chr22:35719511-35719512		95.49	100.00	90.91	88.89	96.30	100.00	90.91	92.31	90.72	88.54	86.52	93.33	92.16	95.35	93.68	97.59	100.00	85.19	100.00	93.28	92.96	94.03	94.78	92.31	87.50	93.26	95.24	89.55	95.83	93.75	100.00	94.30	94.12	93.88	91.86	98.28	93.14	94.31	1.17	0.732313	0.901226
N	alternative_acceptor		chr22	+	chr22:20939303-20939417;chr22:20939303-20939395	chr22:20939303-20939387		chr22:20939388-20939395;chr22:20939396-20939417	chr22:20939395-20939396;chr22:20939417-20939418		97.22	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.83	96.77	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.636616	0.862563
N	alternative_acceptor	TMEM222,VPS13D	chr1	+	chr1:27648883-27657210	chr1:27648883-27651837		chr1:27651838-27657210	chr1:27657210-27657211		0.00	0.00	2.27	0.00	0.00	NA	0.00	0.00	0.00	4.00	2.70	0.00	3.03	0.00	0.00	2.63	2.50	0.00	NA	0.00	0.00	0.00	4.00	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	4.35	3.12	5.00	0.00	0.00	0.00	0.391002	0.709013
N	jcn_only_AD	PLEKHM1	chr17	-	chr17:43517593-43518202;chr17:43517593-43522131	chr17:43517593-43522835		chr17:43518203-43522131;chr17:43522132-43522835	chr17:43522131-43522132;chr17:43522835-43522836		100.00	100.00	97.56	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.45	97.87	100.00	100.00	100.00	100.00	100.00	100.00	97.73	100.00	100.00	96.88	100.00	100.00	100.00	NA	94.74	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.191662	0.657607
K	intron_retention		chrX	+	chrX:48759795-48760008				chrX:48759794-48759795;chrX:48760008-48760009		17.95	18.40	22.95	18.27	18.92	23.48	0.00	0.00	2.44	5.26	0.00	7.14	1.72	0.00	2.74	3.57	2.22	0.00	17.18	16.28	14.17	34.15	19.72	34.38	14.41	10.34	23.73	14.58	18.31	17.74	46.51	34.72	20.24	21.43	22.22	31.91	15.79	13.31	-2.48	0.903903	1.000000
N	jcn_only_AD	MGRN1	chr16	+	chr16:4736305-4738796;chr16:4738559-4738796;chr16:4736625-4738796	chr16:4733934-4738796					83.33	88.24	86.36	NA	75.00	73.68	85.71	86.49	81.13	70.83	72.58	65.85	81.25	80.85	89.09	80.39	65.22	79.31	85.71	78.12	84.62	93.75	71.70	81.25	100.00	85.71	91.30	83.33	66.67	86.36	80.00	91.89	90.00	65.38	75.00	78.26	86.97	82.09	-4.88	0.074370	0.612648
N	jcn_only_AA	TMEM205	chr19	-	chr19:11456296-11456802;chr19:11456092-11456802;chr19:11456414-11456802	chr19:11456305-11456802					90.00	89.16	86.96	87.80	80.33	91.18	93.42	87.10	85.04	88.89	96.00	93.62	90.00	91.18	86.87	92.00	94.12	92.86	89.01	93.18	82.78	91.49	90.14	86.11	92.86	79.41	85.21	79.55	93.75	91.04	92.50	83.58	77.61	86.05	87.72	89.29	89.58	90.59	1.01	0.945932	0.981281
K	alternative_acceptor	RIOK3	chr18	+	chr18:21057233-21059289	chr18:21057233-21059280		chr18:21059281-21059289	chr18:21059289-21059290		100.00	100.00	93.33	91.67	80.00	100.00	93.10	96.77	97.50	100.00	100.00	100.00	100.00	100.00	97.67	100.00	96.88	95.24	100.00	93.18	100.00	96.55	100.00	100.00	NA	93.62	100.00	100.00	100.00	100.00	90.74	92.00	100.00	95.00	100.00	100.00	100.00	95.19	-4.81	0.197638	0.663782
N	alternative_donor	DENND3	chr8	+	chr8:142190954-142195237	chr8:142192587-142195237		chr8:142190954-142192586	chr8:142190953-142190954		0.00	5.00	2.70	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	2.22	NA	7.14	0.00	4.76	0.00	0.00	0.00	0.391002	0.657675
K	alternative_acceptor	ARRDC1	chr9	+	chr9:140507459-140507864;chr9:140507459-140507874	chr9:140507459-140507911		chr9:140507865-140507874;chr9:140507875-140507911	chr9:140507874-140507875;chr9:140507911-140507912		82.61	72.73	50.00	NA	81.82	NA	96.88	100.00	95.65	NA	100.00	NA	93.55	96.67	95.83	NA	100.00	NA	NA	75.00	NA	NA	78.26	NA	53.85	94.74	82.35	NA	84.21	NA	NA	61.54	72.73	58.33	76.92	72.73	72.73	94.74	22.01	0.239947	0.694094
K	intron_retention	BANF1	chr11	+	chr11:65769985-65770705				chr11:65769984-65769985;chr11:65770705-65770706		0.00	0.00	10.00	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	2.78	2.56	0.00	0.00	7.69	3.57	0.00	3.57	NA	13.33	NA	13.33	0.00	2.78	0.00	0.00	12.50	4.35	9.09	0.00	0.00	0.00	0.00	0.00	0.783746	1.000000
N	alternative_donor	HNRNPLL	chr2	-	chr2:38791380-38795340	chr2:38791380-38791965		chr2:38791966-38795340	chr2:38795340-38795341		4.65	4.55	5.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	3.70	0.00	0.00	4.44	6.67	8.33	7.84	3.12	0.00	3.23	0.00	3.23	3.03	0.00	6.90	6.25	5.88	1.35	3.46	2.11	0.734931	0.890213
K	intron_retention	C21orf33	chr21	+	chr21:45564799-45565452				chr21:45564798-45564799;chr21:45565452-45565453		100.00	100.00	100.00	100.00	95.92	97.83	97.22	100.00	100.00	100.00	97.14	100.00	100.00	NA	100.00	96.97	98.82	90.91	100.00	100.00	100.00	94.44	92.31	NA	100.00	100.00	100.00	85.71	96.83	94.74	100.00	100.00	100.00	97.14	88.14	92.31	100.00	100.00	0.00	0.594508	1.000000
K	jcn_only_AD	SMDT1	chr22	+	chr22:42475910-42477928	chr22:42475959-42477928		chr22:42475910-42475958	chr22:42475909-42475910		100.00	100.00	100.00	96.00	97.92	94.74	95.35	100.00	100.00	100.00	97.10	94.44	97.32	93.33	94.74	98.92	100.00	95.12	97.56	100.00	96.00	96.88	95.45	100.00	93.94	100.00	100.00	100.00	100.00	97.96	94.12	95.24	95.77	96.49	98.00	98.25	96.54	100.00	3.46	0.450251	0.706163
K	jcn_only_AA	TADA3	chr3	-	chr3:9833178-9833899;chr3:9833066-9833899	chr3:9833170-9833899		chr3:9833066-9833169;chr3:9833170-9833177	chr3:9833065-9833066;chr3:9833169-9833170		0.00	0.00	3.45	NA	0.00	NA	0.00	3.64	2.70	0.00	4.92	0.00	1.89	0.00	0.00	0.00	5.77	15.38	NA	0.00	6.67	0.00	0.00	0.00	NA	0.00	2.70	0.00	5.26	0.00	0.00	6.67	0.00	4.00	0.00	6.90	0.00	0.00	0.00	0.865825	0.948406
N	alternative_acceptor	SHARPIN	chr8	-	chr8:145153893-145153983	chr8:145153898-145153983		chr8:145153893-145153897	chr8:145153892-145153893		100.00	100.00	100.00	100.00	94.29	93.75	100.00	100.00	NA	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.00	100.00	91.67	NA	100.00	NA	100.00	100.00	90.91	100.00	100.00	100.00	100.00	96.67	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.195771	0.661405
K	jcn_only_AA	IL24,MAP7D1	chr1	+	chr1:36644917-36645115	chr1:36644917-36645112		chr1:36645113-36645115	chr1:36645115-36645116		10.66	10.33	14.75	15.60	13.72	14.75	13.04	9.75	9.87	15.28	9.36	8.00	10.97	8.24	13.12	11.08	12.18	14.68	10.37	10.62	8.46	14.72	16.71	17.59	11.61	11.94	11.72	16.35	12.05	15.72	13.06	11.97	9.93	14.86	15.28	15.17	10.67	10.64	-0.03	0.699816	0.867936
K	intron_retention	USP39	chr2	+	chr2:85875977-85876139				chr2:85875976-85875977;chr2:85876139-85876140		96.15	100.00	97.30	95.00	94.44	87.50	86.36	92.86	87.50	93.33	100.00	NA	96.15	93.33	100.00	92.00	94.44	NA	91.38	93.10	90.16	88.89	95.56	100.00	100.00	88.00	93.02	100.00	85.29	85.71	87.50	92.45	90.16	95.00	88.89	100.00	93.77	92.98	-0.79	0.828694	1.000000
K	intron_retention	CORO1C	chr12	-	chr12:109040422-109041176				chr12:109040421-109040422;chr12:109041176-109041177		100.00	100.00	100.00	100.00	100.00	98.72	100.00	97.20	95.16	100.00	99.48	100.00	97.32	100.00	98.04	97.58	100.00	100.00	100.00	99.09	100.00	100.00	95.67	100.00	100.00	99.01	100.00	96.51	100.00	94.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.55	-0.45	0.909177	1.000000
N	jcn_only_AD	CARNMT1	chr9	-	chr9:19108746-19118318	chr9:19108746-19116356					100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	NA	NA	90.00	NA	97.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.70	100.00	100.00	NA	100.00	100.00	0.00	0.194071	0.657607
K	cassette	ATP5J2	chr7	-	chr7:99055979-99057708	chr7:99055979-99056769;chr7:99056887-99057708		chr7:99056770-99056886			82.59	73.24	86.09	77.73	82.80	75.98	93.83	96.80	94.08	90.06	91.46	91.96	94.32	93.94	94.74	92.90	92.74	91.76	82.20	86.22	87.48	87.31	90.91	90.34	78.59	91.18	88.74	92.12	93.38	92.64	87.25	89.34	80.91	85.19	87.64	85.42	81.56	89.22	7.66	0.190607	0.709176
N	cassette	SNRPA	chr19	+	chr19:41257387-41265335	chr19:41257387-41263236;chr19:41263410-41265335		chr19:41263237-41263409			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	CD300C	chr17	-	chr17:72536662-72538999;chr17:72534063-72538999	chr17:72537876-72538999		chr17:72534063-72536661;chr17:72536662-72537875	chr17:72534062-72534063;chr17:72536661-72536662		100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	95.00	94.12	NA	100.00	100.00	89.66	100.00	100.00	NA	NA	100.00	77.65	100.00	100.00	NA	92.86	100.00	100.00	100.00	NA	81.25	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AD	WDFY3	chr4	-	chr4:85599433-85600056;chr4:85599433-85600071	chr4:85599433-85600099		chr4:85600057-85600071;chr4:85600072-85600099	chr4:85600071-85600072;chr4:85600099-85600100		2.13	0.00	0.00	NA	NA	NA	0.00	6.90	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.241712	0.657607
N	jcn_only_AA		chr6	+	chr6:36990147-36992992;chr6:36990147-36992548;chr6:36990147-36990971;chr6:36990147-36990964	chr6:36990147-36993567		chr6:36990965-36990971;chr6:36990972-36992548;chr6:36992549-36992992;chr6:36992993-36993567	chr6:36990971-36990972;chr6:36992548-36992549;chr6:36992992-36992993;chr6:36993567-36993568		96.95	100.00	NA	NA	100.00	NA	97.44	96.17	100.00	100.00	100.00	100.00	96.88	94.71	100.00	100.00	100.00	100.00	NA	94.68	NA	NA	100.00	100.00	100.00	92.91	NA	100.00	100.00	100.00	92.21	100.00	100.00	94.12	100.00	95.04	100.00	94.69	-5.31	0.002435	0.417242
N	alternative_donor	CD163	chr12	-	chr12:7649730-7651410;chr12:7649730-7651463	chr12:7649730-7649865		chr12:7649866-7651410;chr12:7651411-7651463	chr12:7651410-7651411;chr12:7651463-7651464		1.55	10.81	0.70	31.03	17.65	50.00	0.59	1.58	1.27	1.29	1.04	1.03	0.71	1.63	1.41	2.95	1.11	1.14	37.78	2.45	15.13	2.46	2.16	1.22	8.26	2.24	1.09	3.05	2.90	6.11	6.78	1.78	24.24	1.31	1.29	0.89	9.54	1.94	-7.60	0.124724	0.540946
K	intron_retention	APEH	chr3	+	chr3:49719870-49719978				chr3:49719869-49719870;chr3:49719978-49719979		5.26	2.04	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	3.23	0.00	2.86	0.00	0.00	0.00	0.00	0.00	3.57	0.00	2.13	0.00	1.02	0.00	-1.02	0.805028	1.000000
N	alternative_acceptor		chr3	+	chr3:52525530-52525892;chr3:52525530-52525646	chr3:52525530-52525887		chr3:52525647-52525887;chr3:52525888-52525892	chr3:52525887-52525888;chr3:52525892-52525893		87.65	85.47	82.28	NA	86.44	NA	100.00	NA	90.00	NA	95.45	NA	95.83	100.00	NA	100.00	98.15	NA	90.91	84.62	90.48	83.33	86.17	NA	93.94	100.00	86.57	NA	86.75	NA	82.35	85.29	87.18	90.00	79.31	93.33	92.42	87.65	-4.77	0.777381	0.917646
N	jcn_only_AD		chr2	-	chr2:95772203-95773998	chr2:95772203-95773919		chr2:95773920-95773998	chr2:95773998-95773999		94.12	100.00	91.18	100.00	98.21	100.00	98.57	100.00	100.00	100.00	100.00	96.97	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.48	100.00	NA	100.00	96.55	100.00	100.00	96.00	100.00	100.00	0.00	0.791338	0.902717
K	cassette	MR1	chr1	+	chr1:181019423-181022708	chr1:181019423-181021370;chr1:181021647-181022708		chr1:181021371-181021646			35.19	37.50	30.68	30.00	25.00	42.86	36.47	50.39	41.98	44.00	50.00	56.76	43.84	61.22	43.40	41.94	54.90	50.00	34.62	45.95	48.21	42.11	36.00	60.00	19.23	53.98	42.31	50.00	51.85	46.97	24.47	31.53	37.50	42.11	36.36	40.00	36.98	48.17	11.19	0.143845	0.709176
K	alternative_acceptor	HPS1	chr10	-	chr10:100195530-100202880	chr10:100202715-100202880		chr10:100195530-100202714	chr10:100195529-100195530		3.03	4.00	1.85	NA	5.26	NA	5.32	1.89	4.65	5.97	4.17	4.08	1.89	0.00	1.56	2.50	1.30	1.79	16.67	2.04	11.76	2.63	2.00	1.54	5.26	2.86	2.33	2.94	3.95	4.35	2.94	1.54	6.67	1.19	1.11	0.88	5.29	2.45	-2.84	0.086571	0.586065
K	intron_retention	ATP5G3	chr2	-	chr2:176043131-176043784				chr2:176043130-176043131;chr2:176043784-176043785		6.52	2.28	6.22	2.60	1.80	1.56	1.59	0.92	1.41	1.01	1.38	1.10	1.58	1.25	1.30	1.38	1.71	1.08	2.19	6.90	0.79	4.05	2.21	4.18	1.57	1.22	2.25	1.36	0.45	0.70	8.66	6.83	2.30	3.28	3.04	2.82	1.89	3.88	1.99	0.338861	1.000000
N	cassette	DGUOK	chr2	+	chr2:74159811-74185272;chr2:74154180-74184251;chr2:74166150-74184251;chr2:74154180-74185272	chr2:74154180-74173845,chr2:74166150-74173845,chr2:74159811-74173845;chr2:74174034-74185272,chr2:74174034-74184251		chr2:74173846-74174033			87.80	92.68	91.09	88.89	85.98	89.29	100.00	88.46	93.88	100.00	93.02	88.89	92.73	84.00	95.92	83.87	100.00	100.00	86.25	100.00	96.25	92.00	82.09	90.91	100.00	90.70	92.59	86.96	88.00	85.71	91.80	97.87	87.21	88.89	100.00	95.74	92.71	89.58	-3.13	0.432306	0.739026
K	intron_retention	TRIM27	chr6	-	chr6:28872051-28872330				chr6:28872050-28872051;chr6:28872330-28872331		94.92	100.00	94.03	97.73	100.00	91.38	100.00	92.31	98.41	95.24	89.36	94.44	100.00	93.33	97.56	98.11	93.94	100.00	100.00	96.15	94.81	96.88	98.04	100.00	100.00	100.00	100.00	100.00	97.62	92.75	100.00	90.70	97.56	90.00	97.37	100.00	100.00	95.53	-4.47	0.069381	1.000000
K	intron_retention		chr2	+	chr2:220368936-220369949				chr2:220368935-220368936;chr2:220369949-220369950		6.06	18.18	6.90	NA	7.14	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	5.26	5.88	7.69	9.09	10.00	16.13	0.00	3.45	10.00	4.35	11.54	10.00	4.17	6.90	3.57	8.70	3.45	17.95	1.78	3.81	2.03	0.463918	1.000000
N	cassette	C6orf1	chr6	-	chr6:34214927-34215457;chr6:34214927-34215517;chr6:34214888-34215457	chr6:34214888-34215243,chr6:34214927-34215243;chr6:34215270-34215517,chr6:34215270-34215457		chr6:34215244-34215269			80.56	76.32	84.00	81.82	75.00	83.33	97.22	94.12	86.67	NA	91.30	NA	97.87	96.88	86.96	90.00	88.89	NA	84.00	84.62	88.64	NA	75.47	72.73	80.00	73.81	82.61	84.21	83.02	84.21	65.96	73.08	89.58	66.67	73.53	73.33	86.79	82.59	-4.20	0.443798	0.746907
N	jcn_only_AA	GGA1,NCAPH2	chr22	+	chr22:50956482-50956561	chr22:50956482-50956556		chr22:50956557-50956561	chr22:50956561-50956562		9.76	0.00	0.00	5.56	7.14	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	7.14	4.35	0.00	0.00	6.82	0.00	0.00	9.09	0.00	7.69	0.00	NA	7.89	12.50	8.57	10.53	8.57	12.90	0.00	8.49	8.49	0.036673	0.663989
N	alternative_acceptor	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61135723;chr11:61135471-61136243;chr11:61135471-61136071	chr11:61135471-61136068		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		91.67	95.00	88.89	94.59	92.11	77.27	100.00	100.00	100.00	96.30	95.35	NA	NA	100.00	NA	100.00	90.91	NA	88.89	100.00	100.00	89.47	87.88	NA	NA	100.00	90.91	95.65	95.83	100.00	88.57	82.61	95.00	93.55	97.06	94.12	95.00	100.00	5.00	0.543088	0.821984
K	intron_retention		chr11	+	chr11:72537289-72537562				chr11:72537288-72537289;chr11:72537562-72537563		2.27	4.23	9.84	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	3.23	0.00	0.00	0.00	2.94	NA	0.00	0.00	3.92	NA	0.00	NA	0.00	3.33	0.00	9.52	2.86	8.33	0.00	0.00	0.00	0.500095	1.000000
K	intron_retention		chr11	+	chr11:72535168-72535778				chr11:72535167-72535168;chr11:72535778-72535779		7.32	4.88	8.70	NA	0.00	NA	NA	NA	NA	NA	NA	NA	21.05	NA	NA	NA	0.00	NA	0.00	12.50	4.35	NA	4.88	NA	18.18	8.33	9.62	NA	6.67	NA	0.00	1.79	3.45	15.00	5.56	18.18	4.88	7.83	2.95	0.984248	1.000000
K	intron_retention	WRAP73	chr1	-	chr1:3548222-3548776				chr1:3548221-3548222;chr1:3548776-3548777		0.00	6.06	3.03	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	6.90	0.00	0.00	NA	10.00	3.33	3.33	6.25	5.26	11.11	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	EIF1	chr17	+	chr17:39847072-39847154				chr17:39847071-39847072;chr17:39847154-39847155		96.52	96.28	95.80	96.66	96.10	96.82	96.52	95.17	95.92	96.04	96.07	95.28	96.66	95.54	95.86	95.13	96.50	94.87	83.30	83.72	83.22	93.02	92.99	93.28	98.09	96.15	97.02	94.56	92.94	91.70	83.25	81.91	86.71	97.06	96.22	96.49	96.40	95.36	-1.05	0.933089	1.000000
K	intron_retention	QARS	chr3	-	chr3:49136126-49136317				chr3:49136125-49136126;chr3:49136317-49136318		6.52	7.69	14.00	4.00	4.60	2.22	1.02	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	4.55	0.00	3.39	10.71	4.76	6.25	4.84	18.18	3.60	5.71	8.93	0.00	2.78	0.00	15.15	10.94	6.03	8.33	9.43	4.35	3.50	6.12	2.62	0.737928	1.000000
K	jcn_only_AD	RPL11	chr1	+	chr1:24018320-24019098	chr1:24018551-24019098		chr1:24018320-24018550	chr1:24018319-24018320		0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	3.23	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	cassette	PIK3R5	chr17	-	chr17:8792540-8794054	chr17:8792540-8793289;chr17:8793444-8794054		chr17:8793290-8793443			93.33	100.00	90.00	NA	NA	NA	99.01	99.09	98.55	100.00	100.00	100.00	100.00	100.00	100.00	99.07	99.58	100.00	NA	94.12	NA	98.08	97.22	99.00	100.00	97.67	100.00	100.00	94.74	94.44	100.00	100.00	NA	96.55	96.88	96.27	100.00	98.38	-1.62	0.106555	0.693743
N	mutually_exclusive	ADAM8	chr10	-	chr10:135080922-135082251,chr10:135082367-135082948	chr10:135080922-135081432,chr10:135081571-135082948	chr10:135082252-135082366	chr10:135081433-135081570			100.00	100.00	96.49	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.510003
K	alternative_donor	OS9	chr12	+	chr12:58089760-58090057	chr12:58089822-58090057		chr12:58089760-58089821	chr12:58089759-58089760		88.89	90.77	90.06	92.31	98.18	NA	98.18	99.46	99.38	99.23	98.31	99.26	99.44	98.58	100.00	99.12	97.75	98.26	100.00	90.98	94.23	95.08	90.84	95.93	96.15	95.68	90.70	98.46	98.20	97.40	82.56	86.30	82.76	93.69	94.40	94.71	97.17	93.33	-3.83	0.634946	0.835005
N	alternative_donor	EHBP1L1	chr11	+	chr11:65348845-65349009;chr11:65348798-65349009	chr11:65348723-65349009		chr11:65348723-65348797;chr11:65348798-65348844	chr11:65348722-65348723;chr11:65348797-65348798		7.89	0.00	10.14	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	11.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	RCC2	chr1	-	chr1:17736548-17739568	chr1:17736548-17738617;chr1:17738691-17739568		chr1:17738618-17738690			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	MYO9B	chr19	+	chr19:17213368-17214066;chr19:17213368-17256206	chr19:17213368-17253329		chr19:17214067-17253329;chr19:17253330-17256206	chr19:17253329-17253330;chr19:17256206-17256207		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.210184	0.671156
K	jcn_only_AA	ACOT8	chr20	-	chr20:44472361-44472901	chr20:44472412-44472901		chr20:44472361-44472411	chr20:44472360-44472361		15.79	28.00	13.33	40.00	12.00	21.05	0.00	NA	18.18	0.00	15.79	18.18	10.71	23.08	23.53	NA	18.75	0.00	13.64	30.00	12.50	NA	9.09	NA	17.31	0.00	18.75	NA	17.65	8.33	16.67	21.74	4.65	NA	15.38	15.38	12.18	16.67	4.50	0.481525	0.740910
K	alternative_last_exon	RPL28	chr19	+	chr19:55898062-55899302;chr19:55898062-55899297;chr19:55898062-55898134	chr19:55898062-55898652	chr19:55899298-55900256;chr19:55898135-55898599	chr19:55898653-55898978			4.84	1.43	4.48	2.26	1.21	1.26	0.47	1.18	0.60	0.97	0.45	0.51	1.19	0.69	2.02	2.19	0.36	0.53	0.96	5.26	1.35	5.43	2.22	6.91	0.32	4.38	3.08	4.49	2.02	2.83	6.31	5.32	1.71	6.82	4.41	5.67	1.07	4.61	3.53	0.031092	0.217248
K	alternative_first_exon	FAM195B	chr17	-	chr17:79781188-79782162	chr17:79781188-79781287	chr17:79782163-79782363	chr17:79781288-79781389			100.00	97.10	92.86	88.46	92.65	94.05	98.33	100.00	96.55	97.73	96.43	94.74	98.36	95.00	100.00	94.67	95.92	94.87	100.00	96.00	97.78	93.48	97.47	93.88	100.00	93.33	95.00	92.00	96.15	96.39	100.00	95.45	97.67	95.83	94.29	96.39	98.34	98.00	-0.34	0.397457	0.555608
K	alternative_acceptor	ANKRD13D	chr11	+	chr11:67057918-67058946	chr11:67057918-67058062		chr11:67058063-67058946	chr11:67058946-67058947		31.91	50.68	26.60	NA	36.00	NA	16.13	5.26	7.69	NA	21.05	NA	21.05	7.14	6.25	NA	20.00	NA	64.00	24.14	20.00	NA	36.11	NA	75.76	14.29	17.81	NA	26.09	NA	14.29	36.00	60.87	NA	34.15	33.33	55.77	14.29	-41.48	0.021820	0.532838
K	jcn_only_AA	SART1	chr11	+	chr11:65732042-65732562	chr11:65732042-65732521		chr11:65732522-65732562	chr11:65732562-65732563		0.00	0.00	2.44	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	7.14	2.78	7.69	0.00	6.25	2.33	0.00	0.00	0.00	0.959238	0.984876
K	intron_retention	RAPGEF1	chr9	-	chr9:134465366-134467485				chr9:134465365-134465366;chr9:134467485-134467486		0.00	0.00	1.03	NA	0.00	NA	0.00	0.00	0.00	0.97	0.00	0.00	0.82	0.00	0.68	0.53	0.57	0.00	NA	1.72	0.00	2.78	0.00	1.45	14.29	1.32	0.00	0.00	0.00	0.00	0.00	3.03	NA	2.44	1.44	2.36	0.41	0.00	-0.41	0.469747	1.000000
K	intron_retention		chr2	+	chr2:220147652-220147854				chr2:220147651-220147652;chr2:220147854-220147855		4.11	2.63	6.90	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.17	0.00	0.00	1.85	0.00	0.00	2.70	1.39	0.00	3.57	0.00	5.77	8.99	0.00	2.33	5.17	4.44	0.00	3.41	3.41	0.160043	1.000000
N	alternative_acceptor		chr22	+	chr22:44587985-44588976;chr22:44587985-44588837;chr22:44587985-44589685	chr22:44587985-44589680		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		100.00	95.92	100.00	100.00	95.60	95.45	100.00	100.00	100.00	100.00	99.13	100.00	98.78	NA	100.00	100.00	98.06	100.00	95.45	100.00	100.00	100.00	96.30	100.00	86.67	88.24	90.48	91.67	93.48	100.00	92.86	96.77	91.46	93.75	91.04	100.00	95.69	100.00	4.31	0.645282	0.868966
N	intron_retention		chr22	-	chr22:42980031-42980129				chr22:42980030-42980031;chr22:42980129-42980130		100.00	100.00	100.00	98.00	98.89	100.00	95.00	95.59	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	96.43	100.00	97.10	100.00	100.00	95.71	100.00	94.59	98.46	100.00	98.15	96.39	100.00	100.00	100.00	96.83	100.00	99.08	-0.92	0.985645	1.000000
N	jcn_only_AD	PI4KA	chr22	-	chr22:21064286-21064889;chr22:21064286-21064986	chr22:21064286-21064976		chr22:21064890-21064976;chr22:21064977-21064986	chr22:21064976-21064977;chr22:21064986-21064987		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention		chr2	+	chr2:219247826-219248965				chr2:219247825-219247826;chr2:219248965-219248966		7.22	15.62	10.11	30.00	9.68	NA	3.61	4.20	2.17	5.62	4.65	3.64	2.81	3.56	7.06	4.86	4.00	2.63	16.67	7.09	15.00	6.67	8.47	4.17	0.00	5.88	7.89	9.43	7.81	5.56	9.09	7.09	18.18	12.50	10.13	11.48	9.62	6.48	-3.13	0.657166	1.000000
K	alternative_first_exon	GPX4	chr19	+	chr19:1104127-1105184	chr19:1104929-1105184	chr19:1103925-1104126	chr19:1104649-1104928			5.38	3.86	4.10	5.26	2.37	4.26	4.46	8.93	6.00	5.59	4.85	4.41	3.30	3.97	4.13	4.43	3.74	4.94	3.18	4.62	5.58	5.94	2.64	4.94	3.91	7.69	4.65	7.34	3.55	4.65	5.26	2.45	3.16	6.90	5.31	8.20	3.58	5.32	1.74	0.029861	0.124575
N	alternative_acceptor	GAK	chr4	-	chr4:844873-845537;chr4:844858-845537;chr4:844890-845537	chr4:844806-845537		chr4:844806-844857;chr4:844858-844872;chr4:844873-844889	chr4:844805-844806;chr4:844857-844858;chr4:844872-844873		6.15	6.33	7.04	3.23	1.67	1.59	0.00	4.17	3.03	3.23	6.25	5.26	6.06	3.51	6.98	9.68	0.00	10.53	6.90	6.67	6.56	6.67	1.82	5.26	3.70	5.88	6.90	7.69	0.00	6.98	5.48	4.82	5.26	5.56	5.08	7.32	5.66	5.68	0.02	0.618896	0.854460
K	intron_retention		chr12	-	chr12:57638749-57638927				chr12:57638748-57638749;chr12:57638927-57638928		4.94	0.00	12.50	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	2.22	2.44	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.484721	1.000000
N	alternative_acceptor	FAM120B,SYNGAP1	chr6	+	chr6:170704668-170713637	chr6:170704668-170709544		chr6:170709545-170713637	chr6:170713637-170713638		4.17	1.39	5.26	4.00	1.96	2.27	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.78	1.39	5.88	2.04	7.69	2.70	4.17	2.78	7.14	0.00	6.67	3.03	4.00	0.00	8.70	6.67	9.38	0.00	2.90	2.90	0.101534	0.598353
K	intron_retention	STK19	chr6	+	chr6:31947331-31948227				chr6:31947330-31947331;chr6:31948227-31948228		30.00	13.64	38.89	27.27	0.00	11.11	0.00	0.00	6.25	NA	14.29	NA	6.67	8.70	5.26	0.00	7.69	0.00	20.00	16.67	15.79	25.00	26.67	20.00	3.33	16.67	21.43	7.14	18.18	29.63	29.41	27.27	13.33	42.86	25.00	34.78	10.00	16.67	6.67	0.697442	1.000000
K	intron_retention		chr11	+	chr11:67377107-67377851				chr11:67377106-67377107;chr11:67377851-67377852		6.90	1.31	7.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.97	0.00	1.19	0.00	3.74	4.44	0.93	0.00	8.77	0.00	2.04	0.00	0.00	6.00	2.27	3.64	2.70	3.85	1.14	0.00	-1.14	0.679966	1.000000
K	jcn_only_AA	CIC	chr19	+	chr19:42797989-42798089	chr19:42797989-42798086		chr19:42798087-42798089	chr19:42798089-42798090		52.73	47.37	64.71	NA	61.90	NA	55.56	62.79	63.16	60.00	65.71	63.64	60.00	65.71	61.22	70.59	65.22	64.29	NA	50.00	50.00	56.25	57.14	NA	42.86	52.00	58.62	58.62	65.71	73.33	61.54	50.88	62.50	55.17	57.58	64.00	55.56	57.13	1.57	0.434528	0.703894
K	intron_retention	CALR	chr19	+	chr19:13054571-13054755				chr19:13054570-13054571;chr19:13054755-13054756		89.68	91.67	91.23	94.71	94.64	94.50	90.04	89.42	92.25	88.95	89.98	90.04	89.07	91.24	88.48	92.23	89.72	86.94	87.52	86.17	86.00	93.13	91.51	92.93	93.78	90.70	91.36	93.12	93.79	93.89	85.99	85.24	88.04	92.78	91.63	93.15	89.56	89.55	-0.00	0.784554	1.000000
N	intron_retention		chr22	-	chr22:50967768-50968332				chr22:50967767-50967768;chr22:50968332-50968333		94.12	100.00	96.93	100.00	100.00	83.33	100.00	98.41	98.10	100.00	97.78	95.71	100.00	98.80	98.88	96.63	95.60	97.12	82.35	96.52	98.63	100.00	92.50	96.34	100.00	98.80	97.52	97.00	100.00	97.92	94.68	96.20	82.35	100.00	93.48	96.45	100.00	97.47	-2.53	0.614698	1.000000
K	alternative_first_exon	C11orf24,LBHD1	chr11	-	chr11:62432446-62432528;chr11:62432446-62434994	chr11:62432446-62432602	chr11:62434995-62435219	chr11:62432603-62432689			91.38	86.11	85.45	100.00	86.84	94.44	85.29	100.00	92.50	100.00	94.12	100.00	84.09	97.92	91.30	94.12	92.31	NA	83.05	98.04	88.37	93.75	86.27	NA	70.59	96.36	93.44	91.67	92.31	94.74	98.21	93.85	84.31	78.95	81.48	95.24	84.20	97.98	13.78	0.000699	0.015511
N	jcn_only_AD	CRELD2	chr22	+	chr22:50312949-50313377	chr22:50312961-50313377		chr22:50312949-50312960	chr22:50312948-50312949		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	95.83	100.00	100.00	98.72	100.00	93.75	94.74	100.00	100.00	96.30	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.232319	0.657607
K	cassette	KEAP1	chr19	-	chr19:10600045-10602252	chr19:10600045-10600323;chr19:10600530-10602252		chr19:10600324-10600529			95.24	100.00	98.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	97.67	100.00	98.59	100.00	100.00	100.00	100.00	98.21	98.53	100.00	100.00	92.86	96.00	97.56	98.78	100.00	97.83	100.00	98.84	-1.16	0.307103	0.709176
K	intron_retention	MGAT4B	chr5	-	chr5:179225435-179225512				chr5:179225434-179225435;chr5:179225512-179225513		5.75	1.60	7.46	2.63	3.97	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	5.43	6.90	4.05	3.77	2.76	4.00	6.41	4.88	2.17	2.00	2.68	3.33	10.45	11.86	6.31	2.99	7.14	1.56	3.51	5.31	1.80	0.757771	1.000000
N	cassette	SLC22A18	chr11	+	chr11:2939326-2943665;chr11:2939326-2943331;chr11:2939326-2942581	chr11:2939326-2940536;chr11:2940638-2943665,chr11:2940638-2943331,chr11:2940638-2942581		chr11:2940537-2940637			97.44	92.31	100.00	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.33	100.00	90.32	100.00	97.06	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.45	94.87	86.79	89.47	100.00	100.00	96.66	100.00	3.34	0.200571	0.709176
K	intron_retention	CPSF3L	chr1	-	chr1:1250343-1250783				chr1:1250342-1250343;chr1:1250783-1250784		8.89	16.22	12.20	7.14	15.79	NA	0.00	13.33	0.00	0.00	2.27	0.00	2.94	0.00	2.78	5.88	1.96	0.00	NA	8.00	5.26	5.56	12.50	8.00	15.38	6.67	12.82	0.00	13.64	0.00	19.05	11.54	4.55	0.00	6.90	13.16	4.55	8.45	3.90	0.777859	1.000000
N	jcn_only_AA	PARL	chr3	-	chr3:183562115-183580540	chr3:183574340-183580540		chr3:183562115-183574339	chr3:183562114-183562115		0.00	0.00	0.00	0.00	0.00	NA	6.06	0.00	0.00	0.00	1.79	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	4.76	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.203111	0.663989
K	jcn_only_AA	HLA-DMA	chr6	-	chr6:32917565-32918295	chr6:32917667-32918295		chr6:32917565-32917666	chr6:32917564-32917565		100.00	95.20	96.72	89.78	89.94	90.44	92.39	100.00	100.00	88.56	87.17	88.17	92.31	100.00	84.21	93.75	86.98	86.27	89.87	91.07	88.31	91.53	91.23	91.82	91.67	97.03	95.00	91.67	90.16	92.64	92.39	94.83	88.93	89.36	92.38	92.08	91.99	98.52	6.52	0.030040	0.637417
N	alternative_donor	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341224-90342508;chr9:90341165-90342508;chr9:90342384-90342508	chr9:90341169-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		52.56	44.29	53.84	40.85	48.35	48.15	51.26	49.63	46.76	48.24	52.51	52.56	51.71	47.21	45.13	48.13	54.17	53.78	48.78	51.59	47.41	48.09	48.27	49.88	40.91	53.74	53.17	45.59	48.22	46.78	52.15	55.98	59.09	48.13	49.23	45.05	50.02	51.87	1.85	0.536085	0.777227
K	alternative_donor	GET4	chr7	+	chr7:924032-925692;chr7:917965-925692	chr7:916438-925692		chr7:916438-917964;chr7:917965-924031	chr7:916437-916438;chr7:917964-917965		92.00	83.33	84.85	95.00	90.48	NA	100.00	96.15	100.00	100.00	97.83	100.00	97.06	95.24	94.12	97.78	98.15	100.00	93.75	94.74	95.24	95.00	93.48	90.91	83.33	95.83	90.91	96.55	96.30	100.00	94.74	94.29	88.24	95.65	88.46	95.45	91.00	94.99	3.99	0.246677	0.615567
K	intron_retention	CDV3	chr3	+	chr3:133305567-133306002				chr3:133305566-133305567;chr3:133306002-133306003		7.50	0.00	8.62	0.00	0.00	0.42	1.22	0.00	0.00	0.56	0.74	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	5.88	0.00	4.48	4.69	4.81	0.00	3.28	3.92	0.00	0.00	0.00	4.08	4.35	1.32	5.19	6.56	4.55	0.00	3.68	3.68	0.110991	1.000000
K	alternative_last_exon	SLC39A11	chr17	-	chr17:70820023-70845772,chr17:70814544-70845772,chr17:70818162-70845772,chr17:70735042-70845772,chr17:70827590-70845772;chr17:70732859-70845772	chr17:70834260-70845772	chr17:70732789-70732858	chr17:70833939-70834259			0.00	0.00	0.00	NA	NA	NA	1.32	3.85	1.89	3.57	0.00	7.14	2.44	6.25	2.63	0.00	0.00	0.00	NA	3.45	9.52	NA	0.00	0.00	NA	4.00	0.00	NA	10.00	7.14	10.53	3.23	0.00	5.88	0.00	2.70	0.66	3.92	3.26	0.048582	0.234050
N	cassette	ADAP2	chr17	+	chr17:29250089-29261202;chr17:29253937-29261202	chr17:29253937-29258906,chr17:29250089-29258906;chr17:29258987-29261202		chr17:29258907-29258986			92.86	100.00	100.00	NA	100.00	NA	96.75	94.95	95.65	95.83	96.34	95.24	95.40	97.30	92.94	91.84	98.19	93.33	NA	96.05	NA	100.00	98.39	100.00	100.00	96.27	100.00	87.50	96.88	NA	96.88	95.00	NA	100.00	94.44	100.00	98.38	96.16	-2.22	0.144851	0.709176
K	intron_retention	NOP56	chr20	+	chr20:2636681-2637046				chr20:2636680-2636681;chr20:2637046-2637047		11.54	23.91	16.00	12.50	17.65	6.67	7.14	0.00	0.00	1.74	4.48	0.00	9.30	0.00	3.85	3.47	3.57	0.00	17.39	14.29	12.12	16.67	30.19	14.63	42.86	7.14	16.22	11.76	18.00	6.82	13.64	26.32	23.08	12.50	21.21	20.00	20.23	9.34	-10.89	0.433631	1.000000
K	cassette	ETHE1	chr19	-	chr19:44015719-44030666	chr19:44015719-44030352;chr19:44030502-44030666		chr19:44030353-44030501			82.35	75.38	78.57	88.57	79.37	92.68	95.38	93.55	86.21	98.67	98.46	97.30	94.51	100.00	91.43	95.24	96.84	98.82	80.65	95.83	86.96	97.06	90.32	93.75	58.82	80.00	85.71	93.62	87.04	97.26	86.67	74.00	77.59	83.33	86.44	90.59	79.12	90.11	10.99	0.183555	0.709176
K	intron_retention	MOB2	chr11	-	chr11:1491719-1492524				chr11:1491718-1491719;chr11:1492524-1492525		0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	6.25	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.626724	1.000000
K	intron_retention	SORBS3	chr8	+	chr8:22428735-22429230				chr8:22428734-22428735;chr8:22429230-22429231		0.00	8.89	0.00	0.00	2.74	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.00	1.39	0.00	0.00	0.00	2.17	4.55	0.00	3.03	2.56	10.34	3.66	0.00	NA	0.00	2.47	0.00	0.00	0.00	0.00	0.00	1.89	3.17	1.49	0.00	-1.49	0.507057	1.000000
N	alternative_donor	RBM39	chr20	-	chr20:34317450-34319862	chr20:34317450-34319858		chr20:34319859-34319862	chr20:34319862-34319863		3.31	14.29	2.90	15.38	3.57	NA	0.94	3.77	2.44	2.19	3.68	3.20	1.89	4.55	2.50	3.70	2.03	3.23	14.29	3.91	10.53	2.59	2.52	2.89	NA	1.11	2.60	1.41	1.45	6.25	10.17	4.00	30.00	1.76	4.08	1.72	14.29	3.84	-10.45	0.216673	0.592980
N	cassette	FASTK	chr7	-	chr7:150773920-150774396;chr7:150774115-150774396	chr7:150774115-150774187,chr7:150773920-150774187;chr7:150774324-150774396		chr7:150774188-150774323			100.00	92.96	91.43	94.64	88.10	92.66	100.00	NA	100.00	94.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.09	100.00	97.33	100.00	87.76	100.00	87.26	100.00	100.00	100.00	94.59	100.00	100.00	92.59	89.39	91.67	91.89	97.22	92.53	100.00	7.47	0.032686	0.454045
N	jcn_only_AA		chr17	.	chr17:61655990-61656697	chr17:61655990-61656683		chr17:61656684-61656697	chr17:61656697-61656698		7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_last_exon	SRP9	chr1	+	chr1:225971071-225975672,chr1:225971071-225976960;chr1:225971071-225976941;chr1:225971071-225976735	chr1:225971071-225974563	chr1:225976942-225978168;chr1:225976736-225976843	chr1:225974564-225974687			5.04	0.00	7.47	1.64	0.66	0.00	3.64	5.88	6.79	1.60	1.82	1.75	5.69	8.87	14.47	4.87	2.41	1.35	1.12	3.45	0.96	1.05	3.21	2.97	0.00	7.78	3.61	2.04	1.91	0.85	4.08	6.60	1.15	2.82	2.92	2.78	1.14	5.46	4.33	0.011491	0.161746
N	alternative_donor	CCNL2	chr1	-	chr1:1500297-1510684	chr1:1500297-1509857		chr1:1509858-1510684	chr1:1510684-1510685		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	84.62	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.650093
N	jcn_only_AA	KIAA0368	chr9	-	chr9:114125579-114125867;chr9:114124413-114125867	chr9:114124450-114125867		chr9:114124413-114124449;chr9:114124450-114125578	chr9:114124412-114124413;chr9:114124449-114124450		92.86	100.00	100.00	100.00	100.00	98.47	100.00	96.30	91.43	100.00	100.00	95.24	100.00	86.67	93.48	92.98	100.00	100.00	100.00	95.83	100.00	100.00	97.50	94.29	100.00	100.00	96.23	96.36	96.25	97.76	97.56	94.44	100.00	96.05	92.54	96.97	100.00	96.06	-3.94	0.042465	0.663989
K	cassette	SIKE1	chr1	-	chr1:115316994-115321762	chr1:115316994-115318966;chr1:115319081-115321762		chr1:115318967-115319080			100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	100.00	93.75	NA	NA	NA	NA	100.00	94.12	90.00	100.00	90.91	NA	100.00	100.00	0.00	0.685423	0.885445
K	jcn_only_AA	FADS3	chr11	-	chr11:61643449-61643582	chr11:61643476-61643582		chr11:61643449-61643475	chr11:61643448-61643449		0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	4.17	6.00	0.00	0.00	NA	0.00	0.00	3.85	0.00	0.00	NA	0.00	0.00	3.23	5.26	0.00	4.55	6.25	2.78	0.00	0.00	10.53	0.00	0.00	0.00	0.00	0.185159	0.663989
K	intron_retention	CCAR2	chr8	+	chr8:22476869-22477150				chr8:22476868-22476869;chr8:22477150-22477151		7.55	2.22	14.52	9.09	2.94	5.77	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	6.67	0.00	0.00	0.00	1.69	2.17	5.97	0.00	6.58	0.00	2.50	6.06	7.14	6.90	7.84	7.32	5.77	2.67	1.15	5.88	2.17	6.98	1.42	3.97	2.55	0.624553	1.000000
N	cassette	STXBP3	chr1	+	chr1:109342928-109351404	chr1:109342928-109350022;chr1:109350172-109351404		chr1:109350023-109350171			96.23	100.00	94.44	NA	94.74	NA	100.00	100.00	96.43	100.00	96.88	100.00	100.00	95.92	91.94	100.00	91.89	92.00	NA	96.30	92.59	92.11	100.00	100.00	NA	94.12	93.51	95.65	94.29	91.30	92.31	92.86	100.00	95.52	100.00	93.75	100.00	96.08	-3.92	0.010464	0.314700
K	coord_cassette	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31504461-31508098	chr6:31504461-31506539;chr6:31506633-31506923;chr6:31507052-31508098		chr6:31506540-31506632;chr6:31506924-31507051			97.18	100.00	97.32	NA	100.00	NA	100.00	94.29	100.00	100.00	100.00	100.00	97.96	100.00	96.20	100.00	98.81	100.00	100.00	98.39	93.75	100.00	100.00	100.00	100.00	100.00	98.80	100.00	100.00	100.00	100.00	97.44	100.00	97.01	100.00	100.00	100.00	99.19	-0.81	0.219860	0.643829
N	alternative_acceptor	SLC11A2	chr12	-	chr12:51380704-51382164;chr12:51375587-51382164	chr12:51380970-51382164		chr12:51375587-51380703;chr12:51380704-51380969	chr12:51375586-51375587;chr12:51380703-51380704		22.64	13.79	19.12	29.27	21.88	30.56	21.43	15.48	6.45	25.76	28.57	21.43	14.29	18.81	11.76	32.14	25.71	24.00	29.41	20.00	17.65	28.95	19.35	28.07	23.53	34.21	17.39	35.09	38.46	26.97	20.00	18.75	25.00	39.13	28.33	20.43	22.48	20.00	-2.48	0.869620	0.956197
K	cassette	CHCHD7	chr8	+	chr8:57129091-57129889;chr8:57129066-57129889	chr8:57129066-57129238,chr8:57129091-57129238;chr8:57129314-57129889		chr8:57129239-57129313			0.00	0.00	0.00	0.00	1.75	0.86	0.00	1.61	0.00	1.96	0.00	2.70	0.00	1.43	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	4.26	0.00	2.08	0.00	0.00	0.00	0.175622	0.709176
K	jcn_only_AA	IMPDH1	chr7	-	chr7:128040237-128040386	chr7:128040259-128040386		chr7:128040237-128040258	chr7:128040236-128040237		5.97	5.00	3.42	0.00	2.56	NA	0.00	0.00	2.06	0.00	0.00	0.00	0.00	0.00	2.67	0.00	0.00	0.00	6.25	4.35	2.44	0.00	1.20	3.33	0.00	2.08	2.65	3.70	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.63	0.00	2.08	2.08	0.727920	0.877626
N	cassette	USF1	chr1	-	chr1:161011202-161011905	chr1:161011202-161011440;chr1:161011637-161011905		chr1:161011441-161011636			100.00	100.00	97.85	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	94.83	100.00	100.00	100.00	98.70	100.00	100.00	100.00	96.83	96.15	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	cassette	MYL6	chr12	+	chr12:56552496-56553758	chr12:56552496-56553406;chr12:56553515-56553758		chr12:56553407-56553514			91.97	92.25	91.96	92.26	92.47	91.91	98.51	98.73	98.44	97.13	97.83	97.47	98.54	98.47	98.42	97.04	97.33	96.86	93.50	93.64	94.71	90.87	92.60	90.33	95.07	96.14	95.81	94.27	95.83	95.25	87.25	87.03	86.25	88.71	91.09	90.54	94.28	94.89	0.61	0.896226	0.967641
K	jcn_only_AD	TMEM126A	chr11	+	chr11:85365279-85366637	chr11:85365301-85366637		chr11:85365279-85365300	chr11:85365278-85365279		93.75	86.49	90.48	100.00	95.00	90.48	91.67	NA	89.66	100.00	91.43	91.30	91.11	100.00	92.86	95.59	100.00	92.68	92.31	87.50	90.48	90.48	92.98	93.94	100.00	NA	100.00	87.50	92.59	92.31	100.00	100.00	95.74	95.83	93.33	90.38	91.99	96.88	4.88	0.520473	0.754861
K	cassette	YIPF2	chr19	-	chr19:11036450-11038474	chr19:11036450-11038305;chr19:11038393-11038474		chr19:11038306-11038392			66.67	100.00	73.68	NA	NA	NA	97.37	75.00	85.71	78.57	91.30	NA	91.18	81.82	90.00	95.65	78.95	NA	NA	72.73	NA	NA	NA	NA	80.00	NA	81.82	NA	NA	NA	NA	80.00	NA	NA	70.00	91.67	94.28	73.87	-20.41	0.018692	0.373030
N	alternative_acceptor	EMILIN2	chr18	+	chr18:9119387-9119478	chr18:9119387-9119471		chr18:9119472-9119478	chr18:9119478-9119479		100.00	100.00	98.32	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	98.76	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.55	98.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.492741	0.791230
N	alternative_acceptor	FAM219B	chr15	-	chr15:75194405-75194944;chr15:75192479-75194944	chr15:75192941-75194944		chr15:75192479-75192940;chr15:75192941-75194404	chr15:75192478-75192479;chr15:75192940-75192941		16.00	3.66	20.51	18.18	6.12	10.00	4.35	NA	NA	NA	3.85	NA	8.57	9.09	NA	NA	3.45	NA	5.56	11.76	15.38	7.14	4.17	10.00	7.14	NA	17.24	15.38	12.24	NA	26.67	16.67	7.32	5.26	11.43	6.25	6.35	13.88	7.53	0.082997	0.585944
N	jcn_only_AA	LEO1	chr15	-	chr15:52230458-52239488;chr15:52233796-52239488	chr15:52230483-52239488		chr15:52230458-52230482;chr15:52230483-52233795	chr15:52230457-52230458;chr15:52230482-52230483		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	5.26	8.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	TAPBP	chr6	-	chr6:33272159-33281073				chr6:33272158-33272159;chr6:33281073-33281074		95.24	100.00	93.55	NA	100.00	87.50	96.30	93.33	96.04	94.19	95.04	95.35	97.06	93.41	94.82	94.74	96.52	93.75	100.00	93.67	94.12	100.00	88.24	92.98	100.00	96.75	96.51	91.67	100.00	93.48	91.30	94.64	92.86	88.64	100.00	95.97	98.53	93.54	-4.99	0.209160	1.000000
K	intron_retention	TRIM28	chr19	+	chr19:59060608-59060697				chr19:59060607-59060608;chr19:59060697-59060698		7.58	0.00	3.01	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	6.90	3.54	0.00	0.96	1.64	0.00	0.00	0.87	0.00	1.04	0.00	10.96	9.68	4.42	1.79	4.44	1.59	0.00	3.45	3.45	0.415987	1.000000
N	alternative_donor	PCIF1	chr20	+	chr20:44572405-44573506	chr20:44572960-44573506		chr20:44572405-44572959	chr20:44572404-44572405		0.00	0.00	2.44	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	4.76	0.00	0.00	NA	NA	3.57	0.00	5.88	3.57	0.00	0.00	0.00	3.23	NA	0.00	0.00	0.00	2.63	NA	4.35	0.00	3.45	0.00	0.00	0.00	0.363217	0.650093
N	alternative_acceptor	SKIV2L,VARS2	chr6	+	chr6:31936316-31936412;chr6:31936316-31936462	chr6:31936316-31936399		chr6:31936400-31936412;chr6:31936413-31936462	chr6:31936412-31936413;chr6:31936462-31936463		9.38	20.97	20.00	20.00	20.69	38.46	0.00	7.14	8.33	NA	NA	NA	0.00	NA	10.00	0.00	0.00	NA	20.83	12.50	12.50	0.00	11.76	NA	11.11	18.52	12.12	NA	14.29	20.00	18.18	19.15	18.60	13.33	23.53	14.81	14.86	12.50	-2.36	0.798903	0.925595
K	coord_cassette	CD53	chr1	+	chr1:111435156-111441745	chr1:111435156-111436948;chr1:111437024-111437581;chr1:111437678-111441745		chr1:111436949-111437023;chr1:111437582-111437677			92.70	100.00	94.03	76.92	89.74	NA	97.10	96.89	98.11	97.00	95.67	97.18	94.85	96.99	96.20	96.33	97.13	98.60	NA	93.36	89.09	93.04	95.21	95.24	NA	92.11	96.02	95.61	91.96	92.21	95.20	93.39	90.00	93.08	94.00	95.22	95.97	94.28	-1.69	0.699735	0.844933
K	alternative_first_exon	COMMD5	chr8	-	chr8:146076781-146077764;chr8:146076781-146078756	chr8:146076781-146078377,chr8:146076781-146078223,chr8:146076781-146078110	chr8:146078757-146079121	chr8:146078378-146078419			41.38	17.95	54.55	43.48	26.47	NA	18.75	37.14	51.52	31.91	24.07	55.00	17.31	27.91	53.85	27.08	27.08	50.00	12.50	33.33	58.62	44.83	27.45	44.44	NA	40.74	50.00	30.43	23.68	35.29	26.09	37.04	26.32	21.21	15.38	40.00	17.95	35.23	17.29	0.001305	0.016643
K	intron_retention		chr10	+	chr10:104159952-104160034				chr10:104159951-104159952;chr10:104160034-104160035		8.84	8.43	6.87	4.74	9.88	2.70	0.00	0.46	0.36	0.46	0.00	0.42	0.00	0.43	1.16	0.86	0.00	0.98	7.89	7.28	6.00	9.48	9.15	5.61	6.45	3.82	4.95	3.02	8.33	3.05	8.70	8.91	5.00	5.15	7.25	4.61	5.72	5.55	-0.17	0.998041	1.000000
N	alternative_acceptor	APOL2	chr22	-	chr22:36621286-36627385;chr22:36624327-36627385	chr22:36624648-36627385		chr22:36621286-36624326;chr22:36624327-36624647	chr22:36621285-36621286;chr22:36624326-36624327		1.42	2.94	2.50	3.51	10.00	1.87	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.62	0.00	0.00	0.34	7.69	1.50	1.54	2.44	4.55	1.39	NA	0.99	2.94	0.71	3.57	0.36	1.88	1.65	8.00	2.02	0.00	1.11	2.94	1.21	-1.73	0.194474	0.660713
N	jcn_only_AA	ADCY7	chr16	+	chr16:50349050-50349269	chr16:50349050-50349251		chr16:50349252-50349269	chr16:50349269-50349270		3.03	0.00	0.00	NA	0.00	NA	2.17	3.33	0.00	0.00	0.00	2.13	2.34	3.12	0.00	0.00	0.00	2.50	0.00	3.90	NA	11.76	3.17	0.00	0.00	3.36	0.00	0.00	0.00	0.00	2.94	3.70	5.88	0.00	0.00	3.95	1.08	3.23	2.14	0.163407	0.663989
N	jcn_only_AA		chr7	+	chr7:2671913-2673737;chr7:2671913-2685405	chr7:2671913-2686486		chr7:2673738-2685405;chr7:2685406-2686486	chr7:2685405-2685406;chr7:2686486-2686487		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	99.27	99.37	98.27	99.58	100.00	100.00	99.13	99.48	98.98	NA	100.00	NA	100.00	98.73	100.00	NA	100.00	100.00	98.28	97.26	100.00	93.33	100.00	84.62	100.00	100.00	100.00	99.79	100.00	0.21	0.519218	0.760908
N	alternative_donor	TGFBI	chr5	+	chr5:135379784-135382539;chr5:135382246-135382539	chr5:135382185-135382539		chr5:135379784-135382184;chr5:135382185-135382245	chr5:135379783-135379784;chr5:135382184-135382185		95.56	95.74	93.10	NA	85.19	NA	99.30	98.33	97.56	100.00	98.12	100.00	97.47	100.00	100.00	98.61	97.81	100.00	NA	95.24	NA	100.00	86.59	100.00	100.00	95.00	94.79	92.86	79.69	NA	100.00	93.75	NA	91.18	89.17	98.41	98.38	96.94	-1.44	0.587286	0.799662
K	intron_retention	EFTUD2	chr17	-	chr17:42931004-42931636				chr17:42931003-42931004;chr17:42931636-42931637		0.00	6.25	6.52	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	5.26	2.63	0.00	10.53	0.00	5.56	0.00	4.65	0.00	0.00	4.08	0.00	5.13	5.17	2.50	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	MAN2C1	chr15	-	chr15:75648848-75648946;chr15:75648791-75648946;chr15:75648780-75648946;chr15:75648815-75648946	chr15:75648722-75648946		chr15:75648722-75648779;chr15:75648780-75648790;chr15:75648791-75648814;chr15:75648815-75648847	chr15:75648721-75648722;chr15:75648779-75648780;chr15:75648790-75648791;chr15:75648814-75648815		22.73	15.25	13.51	8.33	10.87	20.00	10.00	0.00	0.00	12.00	7.14	6.67	10.26	NA	4.35	5.56	6.38	4.55	19.49	20.83	8.33	8.70	13.89	8.82	14.49	17.65	8.82	13.33	14.81	13.33	15.15	14.00	19.05	13.33	19.61	16.92	14.87	17.65	2.78	0.910353	0.969071
K	jcn_only_AD	FADS3	chr11	-	chr11:61643663-61643842	chr11:61643663-61643830		chr11:61643831-61643842	chr11:61643842-61643843		96.55	100.00	96.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	NA	100.00	100.00	94.81	92.86	100.00	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	0.00	0.363217	0.657607
K	alternative_acceptor	MAN1B1	chr9	+	chr9:139982636-139983404	chr9:139982636-139983320		chr9:139983321-139983404	chr9:139983404-139983405		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	100.00	NA	100.00	NA	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	jcn_only_AA	SNAP47	chr1	+	chr1:227954785-227963489;chr1:227954785-227958271	chr1:227954785-227968227		chr1:227958272-227963489;chr1:227963490-227968227	chr1:227963489-227963490;chr1:227968227-227968228		100.00	100.00	100.00	NA	100.00	NA	94.74	NA	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	95.83	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	95.45	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.174688	0.663989
K	intron_retention	KLHDC3	chr6	+	chr6:42988464-42988829				chr6:42988463-42988464;chr6:42988829-42988830		96.67	97.68	91.84	100.00	96.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.78	100.00	96.67	100.00	98.48	100.00	97.98	100.00	100.00	NA	94.37	95.24	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	98.08	100.00	1.92	0.999049	1.000000
K	intron_retention	PSMC3IP	chr17	-	chr17:40725043-40725124				chr17:40725042-40725043;chr17:40725124-40725125		38.89	52.94	37.50	90.00	71.43	75.00	NA	33.33	NA	NA	40.00	NA	35.00	NA	60.00	38.89	40.00	NA	72.00	33.33	78.26	NA	44.44	NA	100.00	NA	62.50	50.00	60.00	30.00	50.00	37.50	85.19	NA	NA	41.67	72.00	36.11	-35.89	0.133245	1.000000
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28847807-28848048;chr16:28847807-28848170;chr16:28847807-28848068;chr16:28847807-28848071	chr16:28847807-28847918		chr16:28847919-28848048;chr16:28848049-28848068;chr16:28848069-28848071;chr16:28848072-28848170	chr16:28848048-28848049;chr16:28848068-28848069;chr16:28848071-28848072;chr16:28848170-28848171		20.34	23.60	24.44	24.00	25.23	18.37	18.92	18.18	15.38	17.31	19.23	16.67	21.28	19.35	24.14	15.69	18.64	22.22	27.69	27.45	24.00	28.21	26.98	24.32	NA	21.05	22.22	25.00	26.23	22.45	22.73	25.00	24.39	21.82	27.94	22.37	23.60	20.70	-2.91	0.428560	0.740679
K	intron_retention	WBP5	chrX	+	chrX:102612090-102612542				chrX:102612089-102612090;chrX:102612542-102612543		7.50	0.00	2.13	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.92	0.00	0.00	0.00	0.00	NA	1.67	4.35	0.00	2.04	0.00	9.76	2.38	0.00	4.44	2.00	0.00	0.00	2.79	2.79	0.221577	1.000000
K	alternative_acceptor	NOSIP	chr19	-	chr19:50059915-50060131;chr19:50059911-50060131	chr19:50059994-50060131		chr19:50059911-50059914;chr19:50059915-50059993	chr19:50059910-50059911;chr19:50059914-50059915		92.68	100.00	100.00	100.00	96.92	97.27	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.61	100.00	97.40	100.00	100.00	100.00	100.00	100.00	97.67	100.00	94.87	100.00	97.04	98.33	97.03	100.00	100.00	100.00	100.00	100.00	0.00	0.561852	0.830563
K	cassette	RAD23A	chr19	+	chr19:13059173-13059499	chr19:13059173-13059310;chr19:13059367-13059499		chr19:13059311-13059366			98.78	100.00	98.21	100.00	97.18	94.12	100.00	100.00	98.25	99.44	100.00	100.00	100.00	100.00	98.77	98.82	99.55	100.00	92.31	100.00	100.00	98.57	95.83	98.36	100.00	100.00	100.00	100.00	98.81	100.00	100.00	96.30	93.75	100.00	97.85	97.03	100.00	100.00	0.00	0.213342	0.709176
N	cassette	CCAR2	chr8	+	chr8:22475292-22476129	chr8:22475292-22475861;chr8:22476009-22476129		chr8:22475862-22476008			100.00	100.00	94.92	92.31	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	95.65	100.00	95.45	94.74	100.00	100.00	100.00	96.23	100.00	97.62	100.00	94.87	98.21	100.00	100.00	100.00	97.92	100.00	100.00	0.00	0.176489	0.709176
K	intron_retention		chr1	-	chr1:160062486-160062713				chr1:160062485-160062486;chr1:160062713-160062714		18.18	13.33	11.76	NA	NA	6.25	0.00	0.00	1.09	0.00	4.17	0.00	0.00	0.00	2.22	0.00	0.00	7.89	14.29	13.33	0.00	NA	8.33	15.38	41.67	0.00	14.81	5.88	NA	12.00	8.33	17.65	NA	NA	NA	14.81	13.33	4.17	-9.16	0.794582	1.000000
K	alternative_acceptor	SSR1	chr6	-	chr6:7301602-7303782	chr6:7301806-7303782		chr6:7301602-7301805	chr6:7301601-7301602		98.31	100.00	98.75	NA	92.59	NA	99.36	100.00	99.27	98.92	98.88	98.28	99.43	100.00	99.38	100.00	99.16	100.00	95.24	96.67	96.43	97.14	98.59	98.61	NA	97.40	100.00	94.44	97.56	100.00	100.00	98.44	95.24	98.21	98.70	98.78	99.36	99.16	-0.20	0.502125	0.793046
N	alternative_acceptor	CD58	chr1	-	chr1:117057445-117061852	chr1:117057888-117061852		chr1:117057445-117057887	chr1:117057444-117057445		20.00	20.00	19.10	16.67	16.14	6.92	0.00	2.44	2.56	0.90	2.92	0.00	2.56	1.79	7.32	2.52	3.36	1.10	13.54	15.69	14.00	16.47	23.84	16.30	17.07	14.29	17.46	13.41	22.99	7.45	13.89	15.84	14.49	19.19	21.97	12.15	14.02	14.09	0.07	0.987324	0.995150
N	coord_cassette	SAT2	chr17	-	chr17:7529933-7530460	chr17:7529933-7530070;chr17:7530112-7530260;chr17:7530363-7530460		chr17:7530071-7530111;chr17:7530261-7530362			84.21	70.97	100.00	76.92	80.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	70.27	72.00	85.71	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	71.43	77.27	66.67	76.47	73.33	100.00	85.48	92.10	6.62	0.721114	0.863192
N	cassette	LCMT1	chr16	+	chr16:25151569-25175918;chr16:25162937-25175918	chr16:25162937-25172422,chr16:25151569-25172422;chr16:25172526-25175918		chr16:25172423-25172525			94.34	100.00	93.33	100.00	95.35	100.00	92.86	90.32	95.65	100.00	92.31	82.35	92.59	96.30	100.00	88.46	92.59	91.67	95.83	95.00	94.12	100.00	95.35	95.65	100.00	87.50	96.88	94.12	100.00	91.43	94.29	93.94	100.00	95.65	100.00	94.87	97.91	94.31	-3.60	0.079174	0.641134
K	cassette	BCL7B	chr7	-	chr7:72952344-72957877	chr7:72952344-72954211;chr7:72954383-72957877		chr7:72954212-72954382			97.83	100.00	100.00	94.44	100.00	NA	96.77	96.15	96.77	96.00	98.17	93.33	100.00	96.67	98.28	97.47	97.03	96.61	NA	100.00	100.00	94.29	96.49	95.56	58.33	100.00	100.00	100.00	95.12	100.00	95.12	100.00	NA	96.49	97.92	97.06	98.38	97.25	-1.13	0.448930	0.750082
N	jcn_only_AD	CHID1	chr11	-	chr11:870500-874774;chr11:870500-883199	chr11:870500-883147		chr11:874775-883147;chr11:883148-883199	chr11:883147-883148;chr11:883199-883200		100.00	92.72	100.00	100.00	96.88	94.12	93.90	100.00	85.71	88.89	100.00	97.30	95.65	NA	94.74	97.78	100.00	100.00	96.24	100.00	100.00	90.48	94.74	90.48	97.62	NA	100.00	100.00	100.00	97.14	100.00	100.00	100.00	93.10	100.00	97.62	95.94	100.00	4.06	0.013450	0.285457
N	jcn_only_AA	LIPA	chr10	-	chr10:90996409-91005432;chr10:91003499-91005432;chr10:90991789-91005432;chr10:90999843-91005432	chr10:90988156-91005432		chr10:90988156-90991788;chr10:90991789-90996408;chr10:90996409-90999842;chr10:90999843-91003498	chr10:90988155-90988156;chr10:90991788-90991789;chr10:90996408-90996409;chr10:90999842-90999843		100.00	100.00	100.00	NA	90.00	NA	99.57	99.86	100.00	99.41	99.16	99.31	99.48	99.65	100.00	99.20	99.51	99.35	68.75	100.00	91.67	99.47	98.74	99.62	100.00	99.57	100.00	99.18	97.34	99.35	98.95	100.00	53.57	99.15	99.35	99.30	99.53	99.75	0.23	0.187495	0.663989
N	alternative_donor		chr19	-	chr19:50484271-50485074;chr19:50484271-50485124	chr19:50484271-50491628		chr19:50485075-50485124;chr19:50485125-50491628	chr19:50485124-50485125;chr19:50491628-50491629		92.00	93.10	94.87	78.57	91.67	85.71	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	86.67	100.00	88.89	92.59	89.29	100.00	88.24	NA	88.46	92.86	95.24	100.00	85.71	88.89	90.91	95.45	92.31	88.89	88.24	92.31	92.70	92.72	0.02	0.945754	0.984606
K	intron_retention		chr21	+	chr21:34655547-34660408				chr21:34655546-34655547;chr21:34660408-34660409		0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.81	1.12	2.08	0.90	5.56	0.00	3.05	0.53	0.00	0.00	2.70	4.55	1.15	0.00	0.00	0.59	0.97	0.00	0.00	0.66	0.00	0.00	1.45	0.55	0.78	0.00	0.82	0.65	1.06	0.00	0.85	0.85	0.519213	1.000000
N	cassette	YIPF3	chr6	-	chr6:43480837-43481325;chr6:43480939-43481325;chr6:43480613-43481325	chr6:43480837-43481096,chr6:43480613-43481096,chr6:43480939-43481096;chr6:43481190-43481325		chr6:43481097-43481189			97.67	100.00	94.55	100.00	96.97	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.24	97.01	100.00	100.00	93.65	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	96.84	95.00	92.86	100.00	96.30	100.00	100.00	0.00	0.389363	0.709410
K	cassette	ADGRE5	chr19	+	chr19:14501892-14508469;chr19:14501892-14507888	chr19:14501892-14507153;chr19:14507286-14507888,chr19:14507286-14508469		chr19:14507154-14507285			70.00	8.33	60.00	NA	NA	NA	29.89	63.49	47.62	56.86	41.33	63.87	29.41	53.57	60.47	44.74	33.87	52.38	NA	45.45	NA	50.00	18.18	57.58	0.00	35.71	56.25	64.29	37.50	41.18	15.38	27.59	NA	47.37	35.29	55.71	18.87	49.51	30.64	0.026281	0.412736
K	cassette	ADA	chr20	-	chr20:43249789-43251469	chr20:43249789-43251228;chr20:43251294-43251469		chr20:43251229-43251293			94.17	95.79	92.54	96.43	83.78	97.94	100.00	100.00	100.00	100.00	100.00	99.89	100.00	100.00	100.00	99.57	99.07	100.00	91.30	95.00	93.15	96.47	89.87	98.11	88.46	97.75	90.48	97.84	95.00	99.19	97.13	94.32	90.44	97.79	94.10	98.05	93.55	97.44	3.89	0.225721	0.709176
N	jcn_only_AA	PHRF1	chr11	+	chr11:610348-610666;chr11:610348-610500	chr11:610348-610596		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.186830	0.663989
K	intron_retention	P4HB	chr17	-	chr17:79801477-79817175				chr17:79801476-79801477;chr17:79817175-79817176		95.86	90.58	100.00	90.52	93.08	89.23	97.64	97.11	96.73	98.06	98.12	97.50	96.20	95.68	96.77	96.36	98.61	97.57	82.67	92.26	90.85	92.91	95.20	96.50	90.43	93.98	97.18	94.40	93.27	93.58	91.04	93.84	86.19	97.15	93.58	93.78	90.50	94.83	4.33	0.540396	1.000000
N	jcn_only_AA	LIPA	chr10	-	chr10:91003499-91005432;chr10:90988156-91005432;chr10:90991789-91005432;chr10:90999843-91005432	chr10:90996409-91005432		chr10:90988156-90991788;chr10:90991789-90996408;chr10:90996409-90999842;chr10:90999843-91003498	chr10:90988155-90988156;chr10:90991788-90991789;chr10:90996408-90996409;chr10:90999842-90999843		0.00	0.00	0.00	NA	3.33	NA	0.24	0.00	0.00	0.25	0.46	0.36	0.33	0.00	0.00	0.36	0.00	0.19	18.75	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	2.12	0.00	0.00	0.00	20.69	0.48	0.47	0.35	0.29	0.00	-0.29	0.167758	0.663989
N	alternative_donor	E2F4	chr16	+	chr16:67228884-67229684	chr16:67229497-67229684		chr16:67228884-67229496	chr16:67228883-67228884		6.52	8.33	9.84	0.00	0.00	NA	2.04	0.00	0.00	1.23	1.32	2.70	1.85	0.00	1.64	1.25	0.81	2.86	9.09	6.67	5.88	5.13	5.26	13.51	NA	3.57	7.32	6.45	3.92	5.56	15.79	10.81	7.69	10.00	8.00	8.47	7.69	5.04	-2.65	0.899377	0.977754
N	jcn_only_AA	CCDC107	chr9	+	chr9:35660856-35660936;chr9:35660856-35660974	chr9:35660856-35660946		chr9:35660937-35660946;chr9:35660947-35660974	chr9:35660946-35660947;chr9:35660974-35660975		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	6.25	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161962050-161967614;chr1:161954771-161967614;chr1:161948463-161967614	chr1:161966285-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		3.87	4.00	4.35	NA	8.57	NA	2.78	3.54	0.00	0.00	2.70	0.00	0.00	3.80	0.00	NA	0.00	NA	15.56	4.55	5.13	NA	4.44	0.00	4.35	4.84	3.07	0.00	4.55	NA	3.33	1.61	25.00	9.09	5.56	7.69	4.17	3.83	-0.34	0.293012	0.709013
K	alternative_last_exon	ANKHD1,ANKHD1-EIF4EBP3,NPM1	chr5	+	chr5:170832408-170834132;chr5:170832408-170834703	chr5:170832408-170833400	chr5:170834704-170834778	chr5:170833401-170834129			19.64	23.55	14.75	37.70	31.58	57.14	16.13	17.24	8.46	26.24	24.22	26.12	17.78	14.29	8.07	19.65	26.24	30.07	34.05	16.67	32.48	17.57	17.18	17.67	47.17	17.14	13.40	19.01	20.48	26.21	18.81	12.70	37.00	19.37	18.68	20.00	28.80	17.19	-11.61	0.060585	0.256109
N	alternative_donor		chr1	-	chr1:156258911-156262676	chr1:156258911-156261193		chr1:156261194-156262676	chr1:156262676-156262677		100.00	89.55	93.55	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	98.18	100.00	91.88	100.00	100.00	100.00	98.57	100.00	100.00	100.00	96.36	100.00	100.00	94.29	96.59	100.00	3.41	0.059550	0.421463
K	jcn_only_AD	RP11-574K11.31	chr10	-	chr10:75562535-75562766	chr10:75562535-75562729		chr10:75562730-75562766	chr10:75562766-75562767		98.85	94.12	88.48	91.89	92.86	93.94	96.77	93.85	91.35	92.16	94.03	91.96	93.07	93.24	88.66	100.00	96.70	91.11	87.50	94.55	87.14	94.44	95.00	92.91	100.00	85.33	90.34	93.85	92.75	92.00	85.71	88.76	100.00	91.89	88.64	91.63	95.44	93.54	-1.90	0.282276	0.657607
N	cassette	CKLF,CKLF-CMTM1	chr16	+	chr16:66592252-66611006;chr16:66592252-66599788;chr16:66592252-66599985;chr16:66586697-66599788	chr16:66586697-66597024,chr16:66592252-66597024;chr16:66597121-66599788,chr16:66597121-66599985,chr16:66597121-66611006		chr16:66597025-66597120			81.54	87.50	87.97	86.36	81.82	91.43	85.94	91.30	89.29	82.61	85.45	87.50	88.04	80.00	86.67	89.19	83.82	88.46	90.60	95.83	90.86	92.31	91.55	90.00	79.25	83.33	87.50	NA	85.25	93.75	100.00	87.32	87.44	91.67	94.44	89.47	87.47	87.31	-0.16	0.571751	0.830407
K	intron_retention	IGFLR1	chr19	-	chr19:36230528-36231924				chr19:36230527-36230528;chr19:36231924-36231925		8.62	3.37	10.39	1.30	5.32	1.01	7.50	0.00	4.76	0.00	10.00	0.00	8.33	0.00	6.45	6.25	7.89	0.00	2.42	1.89	7.04	3.03	5.31	2.50	2.23	0.00	8.86	10.71	8.21	3.28	2.33	7.69	3.01	1.20	4.55	3.94	3.19	0.94	-2.25	0.410564	1.000000
N	cassette	TPRA1	chr3	-	chr3:127294653-127295459;chr3:127294109-127295459;chr3:127294349-127295459	chr3:127294109-127294782,chr3:127294349-127294782,chr3:127294653-127294782;chr3:127294894-127295459		chr3:127294783-127294893			100.00	100.00	96.77	91.49	100.00	100.00	98.31	97.62	100.00	98.88	98.55	96.92	100.00	100.00	100.00	98.68	99.28	96.33	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	97.22	97.30	94.52	100.00	87.50	95.59	95.77	100.00	100.00	100.00	0.00	0.652534	0.872368
N	alternative_acceptor	GADD45G	chr9	+	chr9:92220449-92220672;chr9:92220449-92220581	chr9:92220449-92220560		chr9:92220561-92220581;chr9:92220582-92220672	chr9:92220581-92220582;chr9:92220672-92220673		4.44	0.00	8.33	2.73	0.00	2.49	0.00	0.00	1.06	0.00	0.00	1.12	NA	0.00	0.00	0.42	0.00	0.95	3.12	3.51	2.04	2.35	3.85	2.35	4.65	3.03	9.09	2.35	6.25	2.01	3.57	4.69	6.67	4.69	0.00	2.67	3.12	3.27	0.15	0.770787	0.914744
K	cassette	SNHG5	chr6	-	chr6:86387211-86387671	chr6:86387211-86387512;chr6:86387587-86387671		chr6:86387513-86387586			94.59	95.74	98.90	98.51	95.61	96.86	93.83	93.75	96.88	97.22	96.20	96.92	90.00	NA	100.00	88.24	92.31	NA	98.00	94.12	95.65	94.51	97.97	98.18	96.09	100.00	96.30	98.15	96.88	96.63	92.63	95.83	95.60	97.22	97.99	96.51	95.67	94.12	-1.55	0.935808	0.984024
N	cassette	EXOSC1	chr10	-	chr10:99196309-99200927;chr10:99197508-99200927	chr10:99196309-99198426,chr10:99197508-99198426;chr10:99198461-99200927		chr10:99198427-99198460			91.67	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	96.30	96.00	100.00	100.00	90.91	100.00	100.00	0.00	0.653243	0.872713
K	cassette	DNASE2	chr19	-	chr19:12989394-12991615	chr19:12989394-12989483;chr19:12989649-12991615		chr19:12989484-12989648			98.00	94.19	96.86	93.75	98.27	100.00	99.41	98.97	98.37	98.94	98.39	100.00	97.21	100.00	100.00	97.89	98.26	100.00	98.48	100.00	98.41	97.75	97.38	99.07	100.00	100.00	100.00	100.00	97.73	97.22	97.96	98.22	96.34	96.94	96.51	98.06	97.84	99.48	1.64	0.153163	0.709176
K	intron_retention	ATP6V0B	chr1	+	chr1:44440780-44441761				chr1:44440779-44440780;chr1:44441761-44441762		6.02	5.75	11.20	2.44	4.23	0.00	8.33	4.76	4.76	4.17	0.00	0.00	13.04	10.00	10.00	6.45	9.09	NA	3.33	7.14	2.38	5.08	4.80	7.89	0.00	11.76	7.69	0.00	11.11	10.00	11.11	8.00	7.32	9.09	7.59	4.94	6.54	8.57	2.04	0.813168	1.000000
K	intron_retention		chr9	-	chr9:132590532-132591483				chr9:132590531-132590532;chr9:132591483-132591484		2.78	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	5.41	0.00	1.39	0.00	9.38	0.00	2.70	0.00	2.27	0.00	3.23	7.69	4.44	0.00	2.00	0.00	2.22	0.00	-2.22	0.981795	1.000000
K	intron_retention		chr19	-	chr19:12790358-12790436				chr19:12790357-12790358;chr19:12790436-12790437		4.17	6.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	4.00	0.00	3.57	0.00	NA	0.00	7.69	0.00	0.00	0.00	10.00	6.45	3.12	0.00	0.00	5.26	0.00	2.08	2.08	0.970869	1.000000
N	jcn_only_AD	MAD1L1	chr7	-	chr7:1976534-1979373;chr7:1976534-1997263	chr7:1976534-1979723		chr7:1979374-1979723;chr7:1979724-1997263	chr7:1979723-1979724;chr7:1997263-1997264		58.33	42.52	42.86	59.09	49.33	57.14	33.33	NA	NA	53.85	40.00	63.64	44.23	20.00	NA	60.87	51.52	36.36	13.43	20.00	21.88	55.00	37.66	63.16	22.64	53.33	18.18	66.67	53.01	78.26	13.04	4.35	9.09	31.82	40.00	37.50	27.98	20.00	-7.98	0.645425	0.818639
K	intron_retention	STAB1	chr3	+	chr3:52547258-52547732				chr3:52547257-52547258;chr3:52547732-52547733		0.97	11.27	4.85	0.00	4.88	0.00	0.18	0.00	0.62	0.00	0.42	0.00	0.48	0.00	0.00	0.00	0.42	0.00	10.87	2.22	NA	0.59	5.00	0.22	10.88	0.00	4.17	0.00	2.23	0.00	0.00	1.39	12.50	0.83	2.83	0.37	10.88	0.00	-10.88	0.071719	1.000000
K	intron_retention	AP1B1	chr22	-	chr22:29724885-29725700				chr22:29724884-29724885;chr22:29725700-29725701		3.77	4.17	11.54	0.00	4.49	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.49	0.00	0.00	0.00	0.93	0.00	3.45	3.57	3.45	0.00	4.24	0.00	0.00	2.00	7.32	10.34	3.23	0.00	4.17	14.29	3.33	0.00	7.14	3.39	1.91	2.79	0.88	0.966268	1.000000
N	jcn_only_AA	ARPC5	chr1	-	chr1:183596730-183599595;chr1:183594042-183599595;chr1:183592607-183599595	chr1:183592586-183599595		chr1:183592586-183592606;chr1:183592607-183594041;chr1:183594042-183596729	chr1:183592585-183592586;chr1:183592606-183592607;chr1:183594041-183594042		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.30	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.67	1.25	0.64	6.76	0.00	0.00	0.73	0.00	0.95	0.00	0.00	0.00	1.18	0.48	1.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	PDLIM7	chr5	-	chr5:176917908-176918010				chr5:176917907-176917908;chr5:176918010-176918011		4.90	0.00	5.81	4.55	3.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	4.26	1.12	5.56	9.09	0.00	0.00	5.61	6.45	0.00	1.41	0.00	3.06	7.03	0.00	5.41	8.64	4.55	0.00	3.66	3.66	0.065477	1.000000
K	alternative_donor	ARSA	chr22	-	chr22:51066221-51066418;chr22:51066221-51066373	chr22:51066221-51066325		chr22:51066326-51066373;chr22:51066374-51066418	chr22:51066373-51066374;chr22:51066418-51066419		30.77	28.12	25.49	NA	21.05	NA	25.71	25.30	20.51	14.71	25.53	24.44	25.00	33.33	26.67	25.00	18.18	17.39	NA	25.00	22.73	16.67	22.64	20.69	30.43	25.35	24.56	25.00	21.05	20.83	17.24	17.95	23.08	25.81	19.35	20.75	25.71	25.33	-0.38	0.910454	0.981916
K	intron_retention	NEAT1	chr11	+	chr11:65191129-65191433				chr11:65191128-65191129;chr11:65191433-65191434		93.43	87.04	93.59	96.00	88.24	100.00	95.00	91.62	86.55	91.18	92.41	93.75	95.06	93.40	94.47	94.94	93.88	100.00	100.00	91.96	89.74	97.32	89.86	93.62	100.00	91.30	92.86	95.20	94.32	93.94	94.06	90.78	NA	93.86	94.55	94.79	95.06	92.68	-2.38	0.543435	1.000000
K	cassette	FBXO18	chr10	+	chr10:5966472-5967329	chr10:5966472-5966713;chr10:5966765-5967329		chr10:5966714-5966764			0.00	0.00	2.08	0.00	0.00	0.00	6.67	7.14	8.00	0.00	NA	NA	0.00	5.88	4.55	6.67	NA	NA	0.00	4.00	14.29	4.76	0.00	5.00	NA	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	0.00	2.00	2.00	0.446259	0.749388
N	alternative_acceptor	C17orf62	chr17	-	chr17:80401843-80402322;chr17:80401699-80402322;chr17:80401382-80402322;chr17:80401503-80402322	chr17:80402001-80402322		chr17:80401382-80401502;chr17:80401503-80401698;chr17:80401699-80401842;chr17:80401843-80402000	chr17:80401381-80401382;chr17:80401502-80401503;chr17:80401698-80401699;chr17:80401842-80401843		84.47	96.63	91.33	100.00	82.26	70.00	93.06	91.07	94.08	91.67	93.48	100.00	94.87	91.23	93.12	96.15	89.58	95.00	77.97	87.91	82.18	100.00	89.06	88.89	100.00	96.00	89.09	85.71	87.76	89.83	83.58	83.22	76.67	95.45	97.50	94.81	93.97	89.49	-4.48	0.860083	0.951926
N	alternative_acceptor		chr19	+	chr19:36036719-36036823	chr19:36036719-36036789		chr19:36036790-36036823	chr19:36036823-36036824		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	coord_cassette	CD300A	chr17	+	chr17:72462883-72473574	chr17:72462883-72469674;chr17:72470014-72470670;chr17:72470825-72473574		chr17:72469675-72470013;chr17:72470671-72470824			97.20	100.00	92.86	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	95.83	96.88	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.431624	0.674674
N	alternative_donor	CDC25B	chr20	+	chr20:3784185-3785215	chr20:3784347-3785215		chr20:3784185-3784346	chr20:3784184-3784185		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	NA	6.25	6.06	0.00	NA	0.00	9.09	0.00	1.67	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	2.33	0.00	0.83	0.83	0.651473	0.843350
K	intron_retention	MALAT1	chr11	+	chr11:65266934-65268382				chr11:65266933-65266934;chr11:65268382-65268383		82.61	82.95	84.38	86.49	80.00	83.02	85.71	92.31	91.89	86.21	82.76	100.00	89.09	86.15	85.87	86.96	89.13	100.00	78.12	72.29	83.18	82.00	85.37	81.55	82.74	86.67	83.50	80.95	85.06	83.54	71.79	77.00	76.19	83.92	81.23	83.29	82.84	84.38	1.53	0.855388	1.000000
N	alternative_donor	PSME2,TRMT5	chr14	-	chr14:24615450-24615554;chr14:24615450-24616322;chr14:24615450-24615742	chr14:24615450-24615551		chr14:24615552-24615554;chr14:24615555-24615742;chr14:24615743-24616322	chr14:24615554-24615555;chr14:24615742-24615743;chr14:24616322-24616323		3.95	0.00	3.75	0.00	0.00	0.00	0.00	0.00	0.69	2.04	0.00	2.82	0.00	1.15	2.20	0.00	0.00	0.00	0.00	3.16	0.69	3.70	0.00	6.38	0.00	1.74	2.63	2.17	0.00	2.46	1.47	3.19	0.00	4.17	4.00	6.90	0.00	1.60	1.60	0.021883	0.284863
N	jcn_only_AD	NADSYN1	chr11	+	chr11:71185570-71189440;chr11:71185573-71189440;chr11:71189351-71189440	chr11:71188485-71189440					14.29	0.00	7.69	NA	8.33	NA	0.00	NA	6.25	5.26	0.00	NA	6.06	0.00	9.52	13.33	11.54	NA	NA	13.33	15.79	NA	20.83	7.69	NA	0.00	17.24	NA	27.78	9.09	NA	9.38	0.00	29.41	11.11	18.75	0.00	6.67	6.67	0.277875	0.657607
K	intron_retention		chr1	+	chr1:32691922-32692003				chr1:32691921-32691922;chr1:32692003-32692004		1.27	4.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	1.43	0.00	1.52	1.18	0.00	0.93	0.00	5.56	2.04	0.00	0.83	0.00	1.23	0.00	0.64	0.64	0.750260	1.000000
K	jcn_only_AD	POLR2H	chr3	+	chr3:184081354-184082753	chr3:184081363-184082753		chr3:184081354-184081362	chr3:184081353-184081354		12.50	18.18	11.76	NA	16.67	NA	0.00	9.52	5.00	NA	0.00	NA	0.00	0.00	7.50	6.67	4.35	NA	4.76	6.25	9.52	0.00	8.33	NA	NA	18.18	5.41	NA	9.09	0.00	0.00	10.26	10.34	NA	0.00	16.67	4.76	7.88	3.12	0.816233	0.914206
K	cassette	RBCK1	chr20	+	chr20:389424-398169;chr20:389424-391055	chr20:389424-390527;chr20:390670-398169,chr20:390670-391055		chr20:390528-390669			86.21	100.00	84.85	92.31	82.61	75.44	91.89	94.85	87.95	73.91	75.86	73.53	96.88	95.50	97.37	75.00	71.88	83.54	92.31	90.62	90.00	85.71	100.00	91.53	100.00	98.61	85.19	91.43	91.67	86.29	93.18	91.43	100.00	90.00	100.00	91.25	98.44	94.02	-4.42	0.150571	0.709176
K	cassette	ATP6V1D	chr14	-	chr14:67817408-67826374	chr14:67817408-67819639;chr14:67819758-67826374		chr14:67819640-67819757			100.00	100.00	94.55	100.00	100.00	NA	100.00	100.00	100.00	100.00	99.32	100.00	100.00	98.08	100.00	100.00	100.00	100.00	NA	100.00	96.30	100.00	100.00	97.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	99.24	100.00	97.44	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	MED14	chrX	-	chrX:40508925-40513615	chrX:40511132-40513615		chrX:40508925-40511131	chrX:40508924-40508925		100.00	NA	100.00	76.92	81.82	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	81.82	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.74	100.00	NA	89.47	85.71	90.91	100.00	97.30	92.85	100.00	7.15	0.186226	0.663989
K	intron_retention	MOB3A	chr19	-	chr19:2077013-2078138				chr19:2077012-2077013;chr19:2078138-2078139		1.92	0.00	1.18	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.17	NA	NA	0.00	0.00	0.00	11.76	2.13	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	3.33	0.00	1.92	1.92	0.506131	1.000000
N	jcn_only_AA	MAP4K2	chr11	-	chr11:64557258-64557360	chr11:64557280-64557360		chr11:64557258-64557279	chr11:64557257-64557258		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.26	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.663989
K	jcn_only_AD	SUPT4H1	chr17	-	chr17:56428870-56429384;chr17:56428870-56429425	chr17:56428870-56429427		chr17:56429385-56429425;chr17:56429426-56429427	chr17:56429425-56429426;chr17:56429427-56429428		89.26	77.78	87.50	100.00	82.09	82.35	78.47	87.95	85.09	78.72	78.91	80.23	81.16	86.80	86.39	77.14	85.00	84.93	83.67	91.23	88.16	88.37	83.46	77.59	82.35	87.91	86.52	82.50	82.56	82.69	90.80	92.90	87.93	80.70	86.11	82.42	81.75	88.61	6.85	0.003722	0.177805
K	cassette	MIF4GD	chr17	-	chr17:73263712-73264163	chr17:73263712-73263826;chr17:73263983-73264163		chr17:73263827-73263982			80.00	87.18	83.33	NA	78.79	NA	92.86	95.24	97.06	100.00	93.10	NA	97.87	94.44	100.00	100.00	100.00	NA	77.78	83.33	NA	NA	85.37	NA	NA	100.00	76.19	90.00	80.00	NA	NA	82.61	86.36	84.62	73.33	75.00	87.18	94.44	7.26	0.678161	0.883836
K	alternative_last_exon	NRP1	chr10	-	chr10:33491915-33496499;chr10:33495282-33496499;chr10:33491924-33496499	chr10:33486638-33496499	chr10:33494377-33495281;chr10:33489946-33491923	chr10:33486549-33486637			7.14	24.32	25.00	16.67	16.67	19.23	25.53	25.00	NA	18.18	10.87	16.67	16.95	9.09	NA	20.00	19.67	16.00	27.03	8.33	25.00	20.00	15.38	9.09	5.00	NA	9.09	5.88	14.29	0.00	NA	NA	18.52	23.08	21.43	9.09	21.42	8.71	-12.71	0.228227	0.447213
K	cassette	PLEKHM2	chr1	+	chr1:16046416-16051811	chr1:16046416-16047823;chr1:16047884-16051811		chr1:16047824-16047883			44.93	48.98	48.81	NA	56.52	NA	66.96	57.58	56.76	66.42	59.69	72.82	67.35	68.75	57.83	68.15	62.04	77.23	50.00	41.56	61.54	69.35	65.38	64.41	57.89	71.76	55.17	70.21	73.53	76.32	46.15	41.10	45.45	48.87	53.33	54.30	53.95	51.86	-2.08	0.883864	0.964407
N	cassette	IL10RA	chr11	+	chr11:117857250-117859096;chr11:117857250-117859102	chr11:117857250-117857321;chr11:117857529-117859102,chr11:117857529-117859096		chr11:117857322-117857528			6.25	12.50	7.50	NA	NA	NA	13.93	15.43	13.07	13.39	11.43	18.12	10.34	11.49	10.32	10.41	14.09	18.29	NA	7.27	8.33	9.38	9.52	11.01	21.05	12.50	9.60	12.90	9.52	12.62	5.56	5.30	0.00	9.88	8.11	9.38	12.50	9.38	-3.12	0.648042	0.870529
N	alternative_donor	LUC7L	chr16	-	chr16:239339-239979;chr16:239339-239966;chr16:239339-239945	chr16:239339-239929		chr16:239930-239945;chr16:239946-239966;chr16:239967-239979	chr16:239945-239946;chr16:239966-239967;chr16:239979-239980		29.63	14.49	16.67	19.30	23.40	18.60	NA	NA	16.67	23.81	NA	12.50	18.18	NA	17.65	16.67	14.29	10.00	21.67	27.27	17.02	15.15	21.05	20.83	17.91	26.67	15.38	15.38	16.13	21.88	32.26	21.95	25.40	20.00	29.17	20.51	18.18	28.45	10.27	0.004540	0.161827
N	alternative_acceptor	STK11	chr19	+	chr19:1223172-1226452;chr19:1223172-1223636	chr19:1223172-1226457		chr19:1223637-1226452;chr19:1226453-1226457	chr19:1226452-1226453;chr19:1226457-1226458		5.00	9.33	11.43	15.00	4.65	0.00	13.04	0.00	0.00	0.00	3.70	0.00	0.00	0.00	3.70	9.09	8.82	NA	18.00	12.50	10.87	NA	0.00	NA	7.55	0.00	5.71	0.00	0.00	14.29	0.00	10.00	12.70	0.00	16.67	0.00	11.02	0.00	-11.02	0.052353	0.570243
K	jcn_only_AA	SBF1	chr22	-	chr22:50906120-50906214	chr22:50906123-50906214		chr22:50906120-50906122	chr22:50906119-50906120		22.22	21.43	7.41	NA	NA	NA	19.44	30.77	13.04	23.08	10.34	21.43	21.21	21.43	25.00	23.81	20.51	21.43	NA	25.00	NA	NA	NA	30.00	0.00	25.00	18.18	NA	NA	NA	NA	18.75	NA	25.00	27.27	19.05	20.33	25.00	4.67	0.168482	0.663989
K	intron_retention		chr19	-	chr19:59067597-59067682				chr19:59067596-59067597;chr19:59067682-59067683		5.37	7.14	4.30	4.90	2.97	2.94	0.00	0.00	0.00	0.48	0.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	6.06	4.17	4.76	4.12	1.96	8.93	4.31	4.17	3.12	2.31	2.82	15.87	9.09	11.29	0.80	3.55	4.59	6.60	4.84	-1.76	0.997386	1.000000
K	alternative_acceptor	LMNA,S100PBP	chr1	+	chr1:156107024-156108278	chr1:156107024-156107444		chr1:156107445-156108278	chr1:156108278-156108279		100.00	100.00	100.00	100.00	99.20	100.00	100.00	93.48	NA	95.74	100.00	93.10	98.92	100.00	100.00	99.03	99.33	100.00	100.00	97.78	97.30	95.38	97.53	88.89	100.00	100.00	100.00	97.50	98.56	100.00	92.31	100.00	98.62	98.88	96.85	93.62	100.00	98.89	-1.11	0.167161	0.660713
K	intron_retention		chr3	+	chr3:183860931-183861229				chr3:183860930-183860931;chr3:183861229-183861230		14.29	13.21	24.32	9.09	8.33	0.00	4.00	NA	0.00	3.33	0.00	0.00	3.57	0.00	9.09	5.13	2.50	0.00	9.09	0.00	3.12	17.24	11.11	14.81	NA	NA	17.24	9.09	9.52	11.54	8.33	12.82	12.50	13.16	22.58	21.05	9.09	4.17	-4.92	0.771526	1.000000
N	jcn_only_AA	NPAS1,PTOV1	chr19	+	chr19:50361911-50363312;chr19:50361911-50363242;chr19:50361911-50363350	chr19:50361911-50362345		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		2.90	2.15	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	3.33	0.00	0.00	0.00	3.33	0.00	0.00	1.52	2.00	0.00	0.00	0.00	5.26	1.67	0.00	0.00	0.00	0.00	0.550267	0.783383
K	intron_retention	KHSRP	chr19	-	chr19:6415469-6415544				chr19:6415468-6415469;chr19:6415544-6415545		16.00	0.00	4.35	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	0.00	3.45	3.77	4.76	0.00	6.25	0.00	0.00	0.00	0.00	15.79	18.52	0.00	3.12	12.12	5.41	0.00	5.62	5.62	0.163459	1.000000
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134465394-134467485;chr9:134465366-134467485	chr9:134466646-134467485		chr9:134465366-134465393;chr9:134465394-134466645	chr9:134465365-134465366;chr9:134465393-134465394		3.77	6.67	2.04	NA	0.00	NA	0.00	1.06	0.83	0.97	1.07	1.79	0.82	0.88	1.34	1.05	1.14	1.64	NA	1.72	0.00	2.78	1.98	2.86	0.00	2.56	1.45	2.27	1.67	0.00	3.57	1.52	NA	1.64	2.13	1.57	0.41	2.14	1.73	0.830944	0.940678
N	alternative_acceptor	PSMB10	chr16	-	chr16:67968852-67969322	chr16:67968875-67969322		chr16:67968852-67968874	chr16:67968851-67968852		3.63	1.60	3.41	3.52	5.43	3.28	0.00	0.36	0.40	0.00	1.77	0.00	0.53	0.74	1.04	0.71	0.00	0.00	3.13	3.19	2.30	6.52	5.22	8.45	2.58	2.20	4.42	4.72	4.35	3.57	2.84	4.96	3.11	4.62	3.45	5.98	2.09	2.52	0.43	0.673931	0.880186
K	jcn_only_AA	BAIAP2	chr17	+	chr17:79077909-79078313	chr17:79077909-79078310		chr17:79078311-79078313	chr17:79078313-79078314		0.00	0.00	NA	NA	8.89	NA	5.00	0.00	0.00	10.34	5.08	0.00	5.71	0.00	NA	9.09	9.26	NA	15.38	0.00	NA	6.67	7.81	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	3.70	4.00	0.00	7.14	4.35	0.00	-4.35	0.084206	0.663989
N	alternative_acceptor	WDR6	chr3	+	chr3:49044965-49051642;chr3:49044965-49049067	chr3:49044965-49048853		chr3:49048854-49049067;chr3:49049068-49051642	chr3:49049067-49049068;chr3:49051642-49051643		8.00	16.00	6.12	NA	NA	NA	2.38	5.88	6.06	5.88	10.00	NA	7.79	7.14	11.54	1.92	1.79	NA	NA	42.86	NA	5.26	4.76	9.09	7.69	10.00	15.38	4.76	5.88	NA	10.00	28.12	NA	7.32	4.17	13.79	7.74	9.00	1.26	0.421445	0.733210
K	alternative_first_exon	WTAP	chr6	+	chr6:160147886-160157289,chr6:160153464-160157289,chr6:160150938-160157289,chr6:160150842-160157289,chr6:160137629-160157289,chr6:160148740-160157289;chr6:160148366-160157289	chr6:160148736-160157289	chr6:160146617-160148365	chr6:160148532-160148735			78.00	44.44	90.16	66.67	45.45	40.91	72.50	93.04	93.96	94.42	79.49	96.66	53.57	90.29	92.36	92.49	71.19	96.51	20.00	87.18	74.42	88.17	80.00	89.77	NA	90.31	92.23	92.22	70.00	90.86	78.18	82.67	20.00	87.56	86.33	87.32	44.44	88.74	44.30	0.010179	0.055464
N	alternative_donor	PPID,RWDD4	chr4	-	chr4:184570722-184572136	chr4:184570722-184572132		chr4:184572133-184572136	chr4:184572136-184572137		0.00	0.00	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	1.39	0.00	0.00	5.56	0.00	7.69	3.70	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	4.35	3.45	3.70	0.00	0.00	0.00	0.363217	0.650093
K	alternative_acceptor	MAP4K4,TTLL4	chr2	+	chr2:219618393-219618953	chr2:219618393-219618856		chr2:219618857-219618953	chr2:219618953-219618954		94.12	100.00	100.00	100.00	92.00	NA	93.33	NA	NA	93.33	95.00	NA	83.33	NA	NA	96.55	100.00	NA	100.00	100.00	92.00	100.00	90.00	NA	100.00	91.67	100.00	90.91	94.74	NA	90.91	88.00	88.89	93.55	93.62	92.86	96.66	92.90	-3.77	0.981780	0.994765
K	alternative_donor	PRR13,RP11-793H13.8	chr12	+	chr12:53835602-53836478;chr12:53835577-53836478	chr12:53835585-53836478		chr12:53835577-53835584;chr12:53835585-53835601	chr12:53835576-53835577;chr12:53835584-53835585		3.85	8.89	8.33	4.55	6.67	NA	9.88	5.19	8.28	5.60	7.83	5.56	10.38	5.22	7.09	6.54	6.79	4.81	6.67	5.00	5.95	7.69	8.06	9.09	18.75	6.71	6.08	7.41	6.00	10.00	4.62	5.81	3.45	7.25	5.81	7.41	9.39	5.10	-4.29	0.080843	0.470724
N	alternative_acceptor	NRP1	chr10	-	chr10:33488092-33491818;chr10:33486614-33491818	chr10:33486638-33491818		chr10:33486614-33486637;chr10:33486638-33488091	chr10:33486613-33486614;chr10:33486637-33486638		97.44	93.85	96.55	94.74	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	96.72	95.24	95.83	100.00	96.15	100.00	97.73	100.00	97.14	97.37	96.49	96.67	NA	100.00	96.36	100.00	96.30	100.00	97.22	100.00	2.78	0.442749	0.750981
N	cassette	C1orf43	chr1	-	chr1:154185101-154186932;chr1:154185101-154192817;chr1:154185101-154192311	chr1:154185101-154186368;chr1:154186423-154186932,chr1:154186423-154192817,chr1:154186423-154192311		chr1:154186369-154186422			60.00	68.29	71.19	76.19	70.37	NA	83.67	83.57	83.33	81.44	83.54	82.91	88.18	85.16	89.22	88.17	87.50	84.96	72.73	71.13	71.79	65.14	68.92	69.92	NA	75.79	72.39	76.74	76.38	75.00	72.73	71.65	68.75	72.08	68.75	72.16	72.73	74.26	1.53	0.779756	0.934744
K	intron_retention	IFI16	chr1	+	chr1:159023515-159024610				chr1:159023514-159023515;chr1:159024610-159024611		4.55	1.99	3.32	4.17	2.31	5.45	0.00	3.61	2.73	1.96	0.00	0.00	1.11	2.35	3.03	0.00	0.00	3.45	2.91	4.10	3.85	5.49	3.23	3.85	4.55	4.08	2.84	3.56	4.03	4.55	6.21	4.22	3.59	4.40	1.35	3.73	2.45	4.09	1.64	0.920558	1.000000
N	alternative_acceptor	ZYX	chr7	+	chr7:100027137-100030541	chr7:100027137-100028652		chr7:100028653-100030541	chr7:100030541-100030542		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	93.75	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	alternative_acceptor	NFKBIA	chr14	-	chr14:35871867-35871976;chr14:35871741-35871976;chr14:35871895-35871976	chr14:35871870-35871976		chr14:35871741-35871866;chr14:35871867-35871869;chr14:35871870-35871894	chr14:35871740-35871741;chr14:35871866-35871867;chr14:35871869-35871870		93.12	91.19	92.97	91.64	92.43	90.69	90.65	93.63	92.74	93.45	93.75	91.77	91.25	92.41	92.02	93.57	91.34	92.38	87.80	90.76	87.92	92.14	92.02	92.35	97.44	93.24	91.65	90.89	91.79	91.53	89.83	89.42	88.41	93.13	92.88	92.65	90.92	92.77	1.84	0.518171	0.804520
N	jcn_only_AA		chr11	+	chr11:67052455-67052548;chr11:67052455-67052575	chr11:67052455-67052545		chr11:67052546-67052548;chr11:67052549-67052575	chr11:67052548-67052549;chr11:67052575-67052576		99.07	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.03	100.00	100.00	92.86	97.92	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.976840	0.991978
N	jcn_only_AA		chr8	+	chr8:100883926-100887649	chr8:100883926-100887645		chr8:100887646-100887649	chr8:100887649-100887650		100.00	100.00	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	NA	87.50	100.00	100.00	90.00	100.00	100.00	100.00	93.75	NA	100.00	NA	100.00	88.89	100.00	100.00	NA	100.00	100.00	100.00	0.00	0.373901	0.663989
N	cassette	OTUB1	chr11	+	chr11:63764121-63764542	chr11:63764121-63764328;chr11:63764414-63764542		chr11:63764329-63764413			96.67	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	96.97	100.00	88.00	100.00	100.00	93.75	100.00	100.00	100.00	97.56	100.00	100.00	100.00	95.65	100.00	91.89	100.00	100.00	100.00	100.00	100.00	98.78	-1.22	0.784615	0.935398
K	intron_retention		chr16	+	chr16:30666742-30666822				chr16:30666741-30666742;chr16:30666822-30666823		9.76	0.00	7.81	9.09	4.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	2.38	0.00	4.35	0.00	3.03	0.00	8.51	4.35	8.62	16.00	7.32	9.09	8.82	3.03	6.56	7.69	7.55	6.45	10.53	11.36	10.34	2.70	6.52	7.14	8.10	3.69	-4.41	0.968934	1.000000
N	alternative_acceptor	TOP2B	chr3	-	chr3:25641015-25642590	chr3:25641021-25642590		chr3:25641015-25641020	chr3:25641014-25641015		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.50	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	alternative_acceptor	RPS9	chr19	+	chr19:54705478-54711265	chr19:54705478-54710143		chr19:54710144-54711265	chr19:54711265-54711266		88.15	87.14	88.75	85.30	87.88	82.86	94.33	92.86	92.55	86.89	92.57	91.61	91.54	90.29	85.64	91.61	88.75	86.57	86.21	91.26	86.95	91.10	92.98	91.88	84.43	86.01	84.51	85.14	89.30	87.53	84.21	87.81	80.29	88.96	88.81	90.28	86.67	89.22	2.55	0.563011	0.831205
K	intron_retention	MADD	chr11	+	chr11:47350256-47350596				chr11:47350255-47350256;chr11:47350596-47350597		4.88	6.49	5.81	3.70	3.85	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.22	0.00	0.00	1.28	0.00	2.56	1.28	5.88	2.04	3.12	3.45	20.00	3.65	4.71	0.00	4.17	0.00	3.23	2.68	3.64	2.78	2.50	5.88	3.10	2.73	-0.38	0.994822	1.000000
N	cassette	MLH1	chr3	+	chr3:37089175-37090394	chr3:37089175-37090007;chr3:37090101-37090394		chr3:37090008-37090100			89.47	100.00	91.89	100.00	90.91	100.00	90.48	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	100.00	86.36	100.00	94.12	100.00	100.00	100.00	100.00	93.33	NA	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	0.00	0.628383	0.864183
K	intron_retention		chr8	-	chr8:145649652-145650100				chr8:145649651-145649652;chr8:145650100-145650101		6.80	6.49	6.60	5.41	7.39	5.84	0.50	2.38	0.00	0.77	1.18	1.05	0.81	2.38	1.43	0.00	0.76	0.00	4.63	7.35	4.35	6.56	9.03	10.42	5.18	2.11	4.90	4.13	4.85	3.92	5.71	7.81	5.16	5.88	6.12	3.60	4.89	4.04	-0.85	0.621575	1.000000
N	jcn_only_AD	RAE1	chr20	+	chr20:55949858-55953068;chr20:55951323-55953068	chr20:55950127-55953068		chr20:55949858-55950126;chr20:55950127-55951322	chr20:55949857-55949858;chr20:55950126-55950127		0.00	28.21	0.00	0.00	3.64	0.00	0.00	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.77	0.00	0.00	0.00	8.01	0.00	-8.01	0.090266	0.632722
N	alternative_donor	BAG1	chr9	-	chr9:33262829-33264273;chr9:33262829-33265483;chr9:33262829-33264203	chr9:33262829-33264221		chr9:33264204-33264221;chr9:33264222-33264273;chr9:33264274-33265483	chr9:33264221-33264222;chr9:33264273-33264274;chr9:33265483-33265484		96.67	89.29	95.65	100.00	100.00	100.00	96.97	97.92	97.96	98.08	97.22	95.38	96.88	96.94	98.36	98.61	97.62	97.10	100.00	100.00	95.45	100.00	97.30	100.00	100.00	97.14	100.00	95.65	100.00	98.48	97.06	96.88	100.00	100.00	96.43	98.00	98.48	97.10	-1.39	0.815530	0.942369
K	jcn_only_AD	TANGO2	chr22	+	chr22:20049205-20050860;chr22:20049207-20050860	chr22:20049230-20050860		chr22:20049205-20049206;chr22:20049207-20049229	chr22:20049204-20049205;chr22:20049206-20049207		0.00	0.00	10.00	NA	NA	NA	0.00	0.00	0.00	10.00	4.35	NA	3.33	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	9.52	NA	0.00	0.00	NA	NA	0.00	NA	9.09	9.52	NA	0.00	0.00	NA	0.00	0.00	0.00	0.641064	0.818639
K	alternative_last_exon	UHRF1BP1	chr6	+	chr6:34839703-34847785	chr6:34839703-34840089	chr6:34847786-34847923	chr6:34840090-34845291			94.12	94.74	91.67	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	100.00	100.00	100.00	96.30	100.00	100.00	94.44	100.00	84.62	95.65	90.48	100.00	100.00	93.10	100.00	88.24	NA	100.00	100.00	98.00	100.00	98.15	-1.85	0.594391	0.732163
K	intron_retention	GLG1	chr16	-	chr16:74486030-74487068				chr16:74486029-74486030;chr16:74487068-74487069		90.11	77.44	84.55	54.55	68.22	25.29	84.62	84.62	83.33	77.27	90.00	60.00	85.23	86.00	85.51	80.65	89.29	69.23	74.68	84.38	74.17	70.83	84.78	68.00	71.84	80.56	83.74	64.71	79.81	43.64	83.58	82.69	70.83	73.68	72.29	62.03	76.06	84.50	8.44	0.656608	1.000000
N	jcn_only_AD	PPP1R21	chr2	+	chr2:48738617-48741853;chr2:48738517-48741853;chr2:48701959-48741853	chr2:48738608-48741853					100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	96.67	94.12	100.00	NA	100.00	NA	98.46	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	95.92	98.61	100.00	97.87	100.00	99.31	100.00	0.69	0.557171	0.777386
N	alternative_acceptor		chr4	-	chr4:122589683-122591108	chr4:122590876-122591108		chr4:122589683-122590875	chr4:122589682-122589683		100.00	100.00	100.00	89.66	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	89.36	100.00	94.92	88.57	100.00	100.00	96.61	100.00	100.00	100.00	94.90	NA	95.45	90.00	95.45	100.00	95.31	100.00	92.59	NA	100.00	100.00	97.32	100.00	97.14	-2.86	0.082994	0.585944
N	jcn_only_AA	FAM65A,PPP4C	chr16	+	chr16:67574405-67574481;chr16:67574405-67574505	chr16:67574405-67574454		chr16:67574455-67574481;chr16:67574482-67574505	chr16:67574481-67574482;chr16:67574505-67574506		0.00	0.00	1.61	NA	NA	NA	0.00	0.00	2.04	1.96	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	NA	0.00	NA	0.00	6.06	0.00	0.00	3.45	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	4.00	0.00	0.00	0.00	0.373901	0.663989
K	intron_retention		chr3	+	chr3:183907232-183907344				chr3:183907231-183907232;chr3:183907344-183907345		0.00	0.00	9.30	NA	0.00	NA	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.57	0.00	4.76	6.52	3.57	NA	0.00	2.70	0.00	0.00	0.00	7.69	1.56	0.00	0.00	1.89	3.64	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor		chr17	+	chr17:37815074-37815321	chr17:37815074-37815303		chr17:37815304-37815321	chr17:37815321-37815322		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	92.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	jcn_only_AA	CCDC84	chr11	+	chr11:118885794-118886016	chr11:118885794-118885997		chr11:118885998-118886016	chr11:118886016-118886017		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	2.17	5.88	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
N	jcn_only_AA	SART1	chr11	+	chr11:64001453-64001569	chr11:64001453-64001544		chr11:64001545-64001569	chr11:64001569-64001570		100.00	100.00	95.56	100.00	97.67	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	98.54	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	95.24	100.00	100.00	100.00	98.56	100.00	100.00	100.00	100.00	100.00	0.00	0.532201	0.770965
K	alternative_acceptor	LMNA,RAB4A	chr1	+	chr1:229431658-229433266	chr1:229431658-229433228		chr1:229433229-229433266	chr1:229433266-229433267		58.82	65.38	87.50	NA	86.36	NA	90.20	81.82	83.33	88.89	93.88	84.62	86.84	90.91	80.00	92.00	87.80	NA	64.71	76.47	72.73	83.33	74.19	NA	NA	61.54	85.71	72.73	87.50	NA	NA	69.57	66.67	86.36	88.00	70.00	66.67	76.47	9.80	0.921145	0.978996
N	alternative_acceptor	UBTF	chr17	-	chr17:42285280-42286719	chr17:42286038-42286719		chr17:42285280-42286037	chr17:42285279-42285280		5.13	14.04	8.43	NA	4.62	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.17	0.00	0.00	NA	12.73	10.00	6.98	8.33	7.46	NA	13.79	2.63	3.57	0.00	1.89	NA	2.70	6.94	9.30	3.33	5.56	7.14	11.02	2.67	-8.35	0.155553	0.660713
K	intron_retention	SAMD4A	chr14	+	chr14:55243259-55251254				chr14:55243258-55243259;chr14:55251254-55251255		5.41	0.00	7.69	4.65	0.00	2.84	0.00	2.78	0.00	0.00	0.00	1.42	4.55	3.61	0.00	3.12	0.00	2.38	0.00	3.23	0.00	16.67	NA	9.59	0.00	5.13	0.00	4.17	0.00	2.87	6.67	NA	0.00	10.00	10.00	6.98	0.00	4.37	4.37	0.365861	1.000000
N	jcn_only_AA	ZDHHC3	chr3	-	chr3:44964460-44970797;chr3:44959636-44970797;chr3:44961830-44970797	chr3:44968340-44970797		chr3:44959636-44961829;chr3:44961830-44964459;chr3:44964460-44968339	chr3:44959635-44959636;chr3:44961829-44961830;chr3:44964459-44964460		88.57	100.00	75.00	100.00	95.00	87.50	75.44	80.65	73.17	83.87	69.39	68.97	79.55	76.92	78.12	72.73	79.41	100.00	84.62	81.82	100.00	NA	70.83	69.23	100.00	80.00	84.44	64.29	83.33	78.57	100.00	87.50	84.21	68.75	86.67	80.00	84.41	81.23	-3.18	0.639533	0.838192
N	alternative_acceptor	EIF4A2	chr3	+	chr3:186505054-186505267;chr3:186505054-186505301	chr3:186505054-186505283		chr3:186505268-186505283;chr3:186505284-186505301	chr3:186505283-186505284;chr3:186505301-186505302		97.96	100.00	97.37	100.00	96.88	NA	99.19	98.55	99.28	95.45	98.21	100.00	97.56	98.15	98.39	96.67	94.83	100.00	100.00	95.10	97.67	93.41	96.33	93.55	100.00	96.67	97.79	95.12	95.65	96.88	92.62	94.71	100.00	93.40	92.24	96.75	100.00	97.31	-2.69	0.023604	0.546324
K	cassette	DHRS4L2	chr14	+	chr14:24464343-24473545	chr14:24464343-24470592;chr14:24470727-24473545		chr14:24470593-24470726			12.90	5.95	14.58	4.35	8.33	5.00	21.43	23.08	36.36	5.88	10.34	0.00	17.86	33.33	NA	7.69	12.00	0.00	26.32	29.41	29.73	NA	30.77	NA	31.58	15.38	17.24	NA	17.65	NA	18.18	33.33	33.33	28.57	25.00	13.33	23.88	20.63	-3.25	0.897519	0.968181
N	intron_retention		chr1	+	chr1:159806003-159806874				chr1:159806002-159806003;chr1:159806874-159806875		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	93.75	100.00	100.00	100.00	100.00	99.30	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.21	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention	HDGF	chr1	-	chr1:156714141-156714799				chr1:156714140-156714141;chr1:156714799-156714800		0.91	2.54	0.91	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	1.08	0.00	0.96	1.08	1.22	0.00	0.00	0.99	0.00	0.00	1.69	6.67	2.35	0.00	0.00	0.45	0.00	0.00	0.46	0.46	0.683318	1.000000
K	coord_cassette	NQO2	chr6	+	chr6:3000320-3006701	chr6:3000320-3002283;chr6:3002521-3003902;chr6:3004024-3006701		chr6:3002284-3002520;chr6:3003903-3004023			1.41	0.00	1.16	0.00	0.72	0.00	0.00	0.00	5.88	0.00	0.00	4.76	2.44	3.03	6.52	0.00	0.00	3.12	0.00	0.00	NA	2.63	2.00	0.00	0.00	0.00	0.00	3.28	1.94	0.00	NA	0.00	0.00	2.08	2.44	3.92	0.00	0.00	0.00	0.527617	0.733074
K	intron_retention	RBCK1	chr20	+	chr20:400376-401514				chr20:400375-400376;chr20:401514-401515		29.55	7.69	28.00	NA	10.00	NA	0.00	2.56	3.64	0.00	0.00	0.00	5.13	6.52	7.89	0.00	0.00	11.76	NA	14.55	0.00	NA	0.00	22.22	11.76	11.76	18.18	26.32	13.33	13.16	10.00	18.42	NA	25.00	25.00	31.91	6.41	10.88	4.47	0.386291	1.000000
N	jcn_only_AA	ABRACL	chr6	+	chr6:139350013-139355291;chr6:139350013-139354885	chr6:139350013-139355295		chr6:139354886-139355291;chr6:139355292-139355295	chr6:139355291-139355292;chr6:139355295-139355296		2.45	4.92	0.00	0.00	4.30	0.00	4.29	1.45	2.52	1.80	2.76	0.00	3.25	2.42	1.94	1.79	3.93	2.63	4.00	3.85	4.10	0.00	0.00	0.00	0.00	2.75	2.76	5.41	3.05	2.38	5.56	0.00	2.44	2.88	2.70	1.39	3.62	2.60	-1.02	0.941530	0.980705
K	intron_retention	VDAC3	chr8	+	chr8:42262443-42262888				chr8:42262442-42262443;chr8:42262888-42262889		0.00	0.00	2.70	3.23	0.76	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	3.60	0.00	1.61	1.56	2.01	1.72	2.65	6.06	0.90	0.00	0.71	2.63	4.26	1.15	2.42	0.71	1.85	3.45	1.21	0.00	-1.21	0.622553	1.000000
N	jcn_only_AD	BCL7C,KNOP1	chr16	-	chr16:30900267-30903906	chr16:30900267-30903896		chr16:30903897-30903906	chr16:30903906-30903907		0.00	2.33	0.00	1.41	0.62	1.97	1.41	0.00	0.00	2.47	1.04	0.00	0.00	NA	0.00	0.00	2.70	0.00	0.48	0.00	1.31	3.70	0.00	0.00	0.00	9.52	2.08	0.00	0.00	0.00	4.55	0.00	0.00	3.33	0.00	0.00	0.24	0.00	-0.24	0.332009	0.657607
K	intron_retention	SLC27A3	chr1	+	chr1:153751362-153751589				chr1:153751361-153751362;chr1:153751589-153751590		12.50	0.00	NA	NA	15.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	NA	0.00	0.00	5.26	10.00	5.13	NA	29.41	25.00	6.67	10.87	16.67	NA	14.29	5.71	0.00	NA	4.00	NA	NA	18.18	2.00	5.00	3.00	0.808187	1.000000
N	alternative_acceptor	PLXND1	chr3	-	chr3:129308371-129324171	chr3:129314906-129324171		chr3:129308371-129314905	chr3:129308370-129308371		0.00	2.27	1.06	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	NA	0.00	0.00	0.00	2.50	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	2.27	0.00	-2.27	0.171773	0.660713
N	jcn_only_AA	MMP9	chr20	+	chr20:2844934-2845036	chr20:2844934-2845010		chr20:2845011-2845036	chr20:2845036-2845037		100.00	100.00	95.35	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	87.18	92.00	89.47	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	GNAS	chr20	+	chr20:57474041-57478585				chr20:57474040-57474041;chr20:57478585-57478586		9.18	1.08	7.41	4.17	4.41	NA	0.59	1.77	0.00	0.63	0.44	0.33	0.30	0.59	0.95	0.67	0.47	0.00	2.78	8.57	3.85	2.70	5.17	3.76	17.39	5.71	7.79	5.21	4.62	3.12	4.48	5.88	0.00	6.37	7.14	2.87	0.83	5.10	4.26	0.744094	1.000000
N	alternative_acceptor	APBA3	chr19	-	chr19:3751084-3751186	chr19:3751096-3751186		chr19:3751084-3751095	chr19:3751083-3751084		88.24	100.00	93.10	100.00	100.00	100.00	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	100.00	100.00	90.48	NA	100.00	NA	100.00	100.00	96.55	NA	100.00	NA	100.00	96.77	84.85	NA	NA	100.00	100.00	100.00	0.00	0.865860	0.954648
K	intron_retention	C17orf62	chr17	-	chr17:80403837-80404498				chr17:80403836-80403837;chr17:80404498-80404499		7.47	12.26	9.56	9.09	8.16	9.09	0.74	0.43	0.70	0.00	0.00	2.08	2.07	1.03	1.00	4.26	2.63	0.00	8.57	4.76	4.65	9.09	6.67	17.07	13.51	6.54	10.53	8.11	5.00	1.64	5.48	5.26	4.76	8.33	9.21	8.55	6.67	5.12	-1.54	0.698405	1.000000
K	intron_retention		chr19	+	chr19:41289981-41292569				chr19:41289980-41289981;chr19:41292569-41292570		0.00	1.09	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.79	0.00	0.90	0.00	5.47	0.00	0.66	0.00	1.05	0.00	0.00	0.79	1.85	2.94	0.97	0.93	0.97	0.00	-0.97	0.407357	1.000000
N	alternative_acceptor	GADD45A	chr1	+	chr1:68151810-68152032;chr1:68151810-68152102	chr1:68151810-68152123		chr1:68152033-68152102;chr1:68152103-68152123	chr1:68152102-68152103;chr1:68152123-68152124		0.00	0.00	0.00	NA	NA	NA	0.00	1.52	1.06	0.00	NA	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.78	NA	NA	0.00	NA	NA	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.709013
K	jcn_only_AA	LILRB1	chr19	+	chr19:55145140-55145424	chr19:55145140-55145421		chr19:55145422-55145424	chr19:55145424-55145425		51.98	44.90	54.17	60.00	50.00	NA	68.85	62.17	64.21	58.24	72.06	63.01	67.80	61.67	57.14	61.64	55.00	62.07	42.11	52.28	47.37	51.28	50.00	57.14	44.00	57.17	58.45	61.68	52.17	63.27	54.23	47.83	50.00	53.33	51.43	53.73	47.45	55.70	8.25	0.517544	0.760908
K	intron_retention	ARAP1	chr11	-	chr11:72408532-72408642				chr11:72408531-72408532;chr11:72408642-72408643		1.12	0.86	2.49	0.00	1.72	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	1.36	0.00	0.00	0.00	11.76	4.76	9.21	5.45	8.39	8.00	39.66	3.39	7.02	2.50	7.95	5.88	10.00	11.22	18.75	8.16	13.45	13.76	6.31	2.25	-4.05	0.425530	1.000000
N	cassette	NUDT22	chr11	+	chr11:63993900-63995039;chr11:63993900-63996718	chr11:63993900-63994106;chr11:63994605-63996718,chr11:63994605-63995039		chr11:63994107-63994604			96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.15	94.74	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	97.30	93.62	NA	100.00	100.00	100.00	100.00	0.00	0.975950	0.995110
N	alternative_donor	WTAP	chr6	+	chr6:160169402-160174491;chr6:160171043-160174491;chr6:160172747-160174491;chr6:160169967-160174491	chr6:160173336-160174491		chr6:160169402-160169966;chr6:160169967-160171042;chr6:160171043-160172746;chr6:160172747-160173335	chr6:160169401-160169402;chr6:160169966-160169967;chr6:160171042-160171043;chr6:160172746-160172747		5.01	15.71	4.21	17.28	15.87	20.15	5.80	7.12	10.19	6.39	11.48	10.05	5.88	6.66	5.55	6.00	9.23	8.05	19.23	3.21	12.84	5.99	6.67	2.04	NA	5.73	1.99	8.33	8.18	11.28	4.61	2.07	18.67	2.00	1.97	1.55	15.71	5.37	-10.34	0.062178	0.426976
K	cassette	RPS6KB2	chr11	+	chr11:67198987-67200070	chr11:67198987-67199823;chr11:67199964-67200070		chr11:67199824-67199963			3.57	2.56	4.88	NA	8.00	NA	5.13	NA	0.00	0.00	5.41	0.00	5.56	8.33	7.14	0.00	4.35	0.00	15.38	0.00	4.00	NA	6.67	0.00	28.57	0.00	9.09	0.00	3.85	0.00	6.25	6.67	4.76	6.90	3.23	0.00	5.34	3.57	-1.77	0.175075	0.709176
N	alternative_acceptor	RPL15	chr3	+	chr3:23958665-23959340;chr3:23958665-23959437	chr3:23958665-23959327		chr3:23959328-23959340;chr3:23959341-23959437	chr3:23959340-23959341;chr3:23959437-23959438		4.44	0.00	1.32	0.00	1.41	0.00	1.74	2.38	1.11	0.35	0.32	0.00	0.49	0.00	0.95	0.00	0.68	0.51	0.00	2.70	2.44	1.19	0.67	0.85	NA	3.57	1.69	1.41	0.89	1.45	10.87	4.23	2.27	1.30	1.35	0.96	0.49	3.13	2.64	0.097660	0.598353
N	cassette	COASY	chr17	+	chr17:40716596-40717000	chr17:40716596-40716726;chr17:40716917-40717000		chr17:40716727-40716916			100.00	100.00	100.00	100.00	95.65	93.75	100.00	92.68	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	95.83	100.00	84.62	100.00	88.24	100.00	100.00	91.89	100.00	100.00	95.45	92.31	93.75	100.00	86.36	100.00	90.70	100.00	97.91	-2.09	0.088515	0.652861
K	intron_retention	CHKB	chr22	-	chr22:51018701-51018786				chr22:51018700-51018701;chr22:51018786-51018787		21.05	12.35	23.71	22.22	46.15	28.57	3.12	11.54	11.54	6.25	8.82	5.88	7.69	20.00	15.79	18.75	26.32	7.69	23.81	16.95	15.62	34.48	39.68	35.48	52.63	20.00	18.89	35.90	33.33	31.71	20.59	19.86	20.69	28.07	24.07	22.08	16.52	20.00	3.48	0.975449	1.000000
N	alternative_donor		chr6	-	chr6:159062393-159063225;chr6:159062393-159063229;chr6:159062393-159065022;chr6:159062393-159063389	chr6:159062393-159065713		chr6:159063226-159063229;chr6:159063230-159063389;chr6:159063390-159065022;chr6:159065023-159065713	chr6:159063229-159063230;chr6:159063389-159063390;chr6:159065022-159065023;chr6:159065713-159065714		95.65	92.73	93.86	100.00	100.00	100.00	100.00	99.51	99.26	100.00	100.00	100.00	100.00	99.16	99.14	99.48	100.00	99.27	100.00	97.79	100.00	97.81	98.18	95.84	100.00	97.78	96.55	98.67	100.00	99.42	97.44	95.80	100.00	93.33	96.91	94.02	100.00	97.78	-2.22	0.521889	0.771242
N	coord_cassette	IL13RA1	chrX	+	chrX:117900940-117938894	chrX:117900940-117907841;chrX:117907939-117910389;chrX:117910475-117938894		chrX:117907842-117907938;chrX:117910390-117910474			97.50	100.00	98.25	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	75.00	100.00	100.00	NA	95.83	100.00	NA	100.00	95.12	NA	100.00	NA	100.00	96.30	NA	100.00	89.47	100.00	100.00	100.00	0.00	0.419861	0.672613
N	cassette	RALY	chr20	+	chr20:32581938-32659871	chr20:32581938-32619327;chr20:32619411-32659871		chr20:32619328-32619410			92.86	96.55	96.91	100.00	98.36	100.00	96.86	98.67	96.55	96.34	94.62	94.89	96.30	95.76	97.81	96.24	94.44	96.58	100.00	96.63	94.87	96.92	96.72	94.81	100.00	100.00	96.63	97.10	96.43	100.00	92.06	92.50	84.00	95.12	97.83	96.12	96.70	96.19	-0.51	0.893776	0.967641
K	intron_retention	CASP1	chr11	-	chr11:104896328-104896952				chr11:104896327-104896328;chr11:104896952-104896953		45.39	11.27	59.79	20.51	22.31	13.30	34.88	39.22	46.59	52.00	64.71	50.00	37.04	36.99	51.35	42.62	53.85	44.44	11.11	49.58	15.46	41.07	36.67	44.44	9.50	33.61	41.84	36.67	26.58	24.35	38.61	57.81	14.29	46.07	34.78	42.42	12.78	38.91	26.13	0.041609	1.000000
K	alternative_acceptor	ACADVL,DHX8	chr17	+	chr17:7127713-7127802	chr17:7127713-7127798		chr17:7127799-7127802	chr17:7127802-7127803		77.48	75.00	85.51	76.52	73.02	78.91	97.37	95.92	95.92	98.17	98.33	97.30	97.14	88.37	92.11	95.92	97.69	98.44	74.40	85.54	83.12	76.56	71.51	79.69	77.42	88.89	75.81	82.98	81.87	90.65	76.34	71.43	77.71	80.22	77.45	83.87	77.56	86.96	9.39	0.687757	0.881898
K	jcn_only_AA	DGUOK	chr2	+	chr2:74174034-74177753;chr2:74174034-74177711	chr2:74174034-74177727		chr2:74177712-74177727;chr2:74177728-74177753	chr2:74177727-74177728;chr2:74177753-74177754		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	C17orf49	chr17	+	chr17:6918476-6919813				chr17:6918475-6918476;chr17:6919813-6919814		18.52	0.00	9.09	18.18	4.55	18.75	NA	NA	0.00	NA	NA	NA	NA	NA	20.00	NA	NA	NA	8.57	11.76	10.53	NA	7.69	30.00	0.00	13.33	11.90	NA	11.76	20.00	15.79	10.42	2.08	20.00	35.71	11.11	1.04	14.56	13.52	0.279312	1.000000
K	intron_retention	TNFRSF14	chr1	+	chr1:2487692-2488023				chr1:2487691-2487692;chr1:2488023-2488024		63.33	62.75	65.62	63.16	48.08	61.54	56.25	70.59	80.00	54.84	41.86	40.00	47.76	55.00	56.25	31.75	41.46	40.00	48.00	58.33	64.29	38.60	50.96	43.48	65.62	61.54	63.16	42.86	47.19	38.46	68.18	85.71	84.21	58.57	57.97	62.32	59.50	62.44	2.94	0.746909	1.000000
K	intron_retention		chr1	-	chr1:25569197-25570040				chr1:25569196-25569197;chr1:25570040-25570041		1.39	1.06	1.95	0.00	0.00	3.70	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.78	0.52	1.43	0.93	0.64	1.71	0.00	1.32	0.89	0.00	0.00	1.15	2.41	2.96	1.92	2.84	0.72	1.33	0.39	0.92	0.53	0.365883	1.000000
K	intron_retention	PSMD3	chr17	+	chr17:38146183-38146346				chr17:38146182-38146183;chr17:38146346-38146347		6.17	6.33	9.43	4.76	5.63	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.56	0.00	3.45	6.17	2.86	5.56	3.57	8.51	15.79	4.24	3.70	0.00	1.27	3.12	5.97	7.89	5.41	3.33	3.70	7.89	4.43	5.11	0.68	0.922906	1.000000
N	alternative_acceptor	SCAMP3	chr1	-	chr1:155228704-155230120;chr1:155228746-155230120	chr1:155228684-155230120		chr1:155228684-155228703;chr1:155228704-155228745	chr1:155228683-155228684;chr1:155228703-155228704		0.00	0.00	0.00	18.18	3.33	NA	0.00	3.33	2.13	0.00	0.00	3.33	0.00	0.00	0.00	4.88	0.00	0.00	14.29	7.69	0.00	0.00	2.86	0.00	0.00	5.26	3.03	4.76	0.00	0.00	6.67	0.00	7.41	3.70	2.78	7.32	0.00	4.29	4.29	0.942572	0.984632
N	alternative_acceptor	FKBP11	chr12	-	chr12:49318432-49318828	chr12:49318639-49318828		chr12:49318432-49318638	chr12:49318431-49318432		23.08	17.24	37.50	NA	15.38	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	NA	25.00	20.00	11.76	NA	30.00	NA	45.45	7.14	20.00	NA	NA	NA	NA	23.08	17.65	NA	NA	NA	21.32	7.14	-14.18	0.096206	0.598353
N	alternative_acceptor		chr11	+	chr11:71946798-71946940	chr11:71946798-71946889		chr11:71946890-71946940	chr11:71946940-71946941		96.77	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.43	NA	100.00	97.83	NA	90.91	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
K	alternative_acceptor	DNAJC7	chr17	-	chr17:40139924-40140749	chr17:40139929-40140749		chr17:40139924-40139928	chr17:40139923-40139924		98.36	92.59	97.14	93.33	98.15	92.31	97.22	97.75	95.80	96.77	93.62	100.00	94.74	98.78	98.20	97.67	96.30	95.00	92.59	96.49	93.55	93.33	93.15	92.00	100.00	97.33	98.00	93.18	96.83	96.23	94.00	93.59	95.00	96.36	98.21	95.31	94.87	97.54	2.67	0.231289	0.684127
N	alternative_first_exon	SIRT7	chr17	-	chr17:79875844-79879094;chr17:79875844-79881025	chr17:79875844-79875914	chr17:79881026-79881090	chr17:79875915-79876070			93.75	100.00	95.65	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	83.33	100.00	NA	NA	83.33	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	83.33	100.00	100.00	100.00	0.00	0.225689	0.431093
N	alternative_acceptor	HNRNPH3	chr10	+	chr10:70099313-70100930	chr10:70099313-70100900		chr10:70100901-70100930	chr10:70100930-70100931		1.01	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.00	1.20	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.78	0.00	0.83	0.00	0.44	0.44	0.570418	0.834831
N	cassette	UBL7	chr15	-	chr15:74738569-74741526	chr15:74738569-74740818;chr15:74740900-74741526		chr15:74740819-74740899			100.00	100.00	100.00	100.00	97.83	100.00	95.83	NA	100.00	87.50	90.00	100.00	100.00	100.00	95.00	100.00	100.00	NA	95.89	100.00	100.00	NA	91.30	NA	100.00	92.86	100.00	NA	100.00	NA	100.00	100.00	91.21	100.00	100.00	95.00	97.94	100.00	2.06	0.503844	0.786614
N	coord_cassette	PPM1G	chr2	-	chr2:27605096-27606818	chr2:27605096-27605342;chr2:27605473-27606232;chr2:27606468-27606818		chr2:27605343-27605472;chr2:27606233-27606467			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	jcn_only_AA	CUX1	chr7	+	chr7:101813831-101821754	chr7:101813831-101821748		chr7:101821749-101821754	chr7:101821754-101821755		81.48	43.75	79.07	NA	100.00	NA	86.02	77.50	88.57	80.77	83.87	89.39	83.33	73.68	90.91	82.54	82.14	86.05	NA	80.95	86.67	64.29	72.73	82.76	100.00	75.00	75.38	88.24	82.93	86.11	74.29	81.63	NA	84.38	82.26	81.45	84.67	76.25	-8.42	0.931947	0.977987
N	alternative_acceptor	U2AF2	chr19	+	chr19:56180159-56180448	chr19:56180159-56180380		chr19:56180381-56180448	chr19:56180448-56180449		4.67	6.00	5.29	5.71	9.21	NA	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.33	0.76	0.61	0.68	0.00	8.11	5.26	5.08	5.43	4.29	5.19	8.82	2.86	5.22	3.17	3.19	4.00	5.63	8.94	6.00	4.35	5.07	8.82	6.00	3.76	-2.24	0.494552	0.791230
K	alternative_last_exon	TMEM14B	chr6	+	chr6:10755466-10759171;chr6:10755466-10770309	chr6:10755466-10756699	chr6:10759172-10760007;chr6:10770310-10770437	chr6:10756700-10757214			100.00	100.00	98.18	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.31	100.00	100.00	100.00	99.23	100.00	96.13	93.94	98.99	95.00	94.62	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.46	99.20	100.00	100.00	100.00	99.66	100.00	0.34	0.923725	0.970242
N	alternative_acceptor	CCDC53	chr12	-	chr12:102433754-102437882;chr12:102433781-102437882	chr12:102433757-102437882		chr12:102433754-102433756;chr12:102433757-102433780	chr12:102433753-102433754;chr12:102433756-102433757		57.69	68.97	65.31	80.00	60.00	NA	68.29	75.86	80.00	80.00	72.97	78.95	75.00	66.67	64.10	72.22	70.97	75.00	76.47	66.67	70.37	64.29	64.29	77.78	66.67	64.52	79.07	73.33	70.00	77.78	73.68	62.86	58.82	76.19	61.54	72.73	68.63	66.67	-1.96	0.691408	0.883019
K	jcn_only_AD	CNN2	chr19	+	chr19:1032669-1036128;chr19:1032663-1036128	chr19:1032696-1036128		chr19:1032663-1032668;chr19:1032669-1032695	chr19:1032662-1032663;chr19:1032668-1032669		100.00	100.00	100.00	NA	100.00	NA	93.75	100.00	94.55	96.10	93.40	98.45	100.00	91.41	94.12	100.00	96.32	96.00	NA	91.89	100.00	NA	100.00	100.00	100.00	97.87	93.44	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.94	-1.06	0.512643	0.751022
N	cassette	PPP1R37	chr19	+	chr19:45645717-45648111	chr19:45645717-45646778;chr19:45646892-45648111		chr19:45646779-45646891			100.00	100.00	89.47	NA	82.61	NA	100.00	NA	100.00	100.00	94.12	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	81.82	86.67	88.24	86.67	NA	100.00	NA	100.00	100.00	96.15	100.00	81.25	100.00	100.00	95.65	89.66	100.00	100.00	90.91	-9.09	0.181766	0.709176
K	intron_retention	INPPL1	chr11	+	chr11:71940603-71940706				chr11:71940602-71940603;chr11:71940706-71940707		0.00	26.32	4.17	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	NA	2.86	NA	NA	5.41	0.00	6.45	0.00	4.11	NA	0.00	NA	0.00	4.65	NA	7.69	9.62	3.23	3.75	0.00	-3.75	0.543008	1.000000
K	intron_retention	DDX39A	chr19	-	chr19:14521985-14522317				chr19:14521984-14521985;chr19:14522317-14522318		6.25	4.55	6.67	5.88	9.09	NA	0.00	0.00	0.00	7.69	3.85	0.00	6.25	0.00	15.79	3.39	4.00	0.00	0.00	13.79	0.00	10.00	9.30	12.00	NA	17.65	8.57	11.54	14.29	5.88	19.23	11.76	10.53	10.42	8.89	9.09	4.55	10.02	5.47	0.697935	1.000000
K	intron_retention		chr2	-	chr2:27606960-27607539				chr2:27606959-27606960;chr2:27607539-27607540		5.41	0.00	3.23	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	6.45	0.00	2.44	1.16	6.25	0.00	0.00	3.64	0.00	1.30	0.00	7.69	8.16	3.33	3.03	4.29	6.56	0.00	2.71	2.71	0.378377	1.000000
K	intron_retention		chr15	-	chr15:90347849-90348308				chr15:90347848-90347849;chr15:90348308-90348309		1.79	4.76	3.97	9.38	7.55	25.00	0.00	0.28	0.38	1.74	1.05	1.09	0.24	0.38	1.01	2.66	1.95	2.64	NA	2.18	1.59	9.09	7.17	9.49	3.45	1.34	3.67	4.81	5.98	5.69	1.62	3.35	NA	9.23	7.17	9.92	1.85	1.48	-0.37	0.281039	1.000000
N	jcn_only_AD		chr6	-	chr6:44084367-44093689;chr6:44084367-44094991;chr6:44084367-44094369	chr6:44084367-44095080		chr6:44093690-44094369;chr6:44094370-44094991;chr6:44094992-44095080	chr6:44094369-44094370;chr6:44094991-44094992;chr6:44095080-44095081		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.75	98.21	91.67	61.67	100.00	91.18	82.50	100.00	100.00	73.33	100.00	100.00	100.00	91.53	96.92	100.00	100.00	100.00	100.00	92.86	100.00	80.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	jcn_only_AA	MYL5,RXFP1	chr4	+	chr4:669999-672454;chr4:669999-672446	chr4:669999-671710					12.50	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	13.79	0.00	8.57	NA	NA	10.00	0.00	18.18	18.18	NA	0.00	0.00	11.76	11.11	0.00	0.00	0.00	9.52	0.00	12.13	12.13	0.213614	0.663989
K	intron_retention	PKMYT1	chr16	-	chr16:3022756-3023138				chr16:3022755-3022756;chr16:3023138-3023139		100.00	100.00	NA	NA	100.00	NA	97.37	90.48	NA	NA	100.00	NA	92.45	89.47	NA	NA	97.44	NA	100.00	100.00	100.00	NA	95.83	NA	100.00	100.00	NA	NA	97.14	NA	NA	NA	100.00	NA	100.00	NA	100.00	100.00	0.00	0.671425	1.000000
K	cassette	NCOR2	chr12	-	chr12:124824990-124826368	chr12:124824990-124825147;chr12:124825298-124826368		chr12:124825148-124825297			80.77	100.00	94.12	NA	NA	NA	98.39	100.00	100.00	96.24	96.69	95.45	100.00	100.00	100.00	94.44	96.57	94.74	NA	92.00	NA	85.00	83.87	86.11	100.00	100.00	100.00	100.00	95.00	100.00	NA	90.91	NA	93.94	85.71	89.83	100.00	100.00	0.00	0.253621	0.709176
N	jcn_only_AA	TRPM2	chr21	+	chr21:45774620-45783996	chr21:45774620-45776105		chr21:45776106-45783996	chr21:45783996-45783997		26.67	40.00	12.82	100.00	93.33	95.83	8.33	19.23	NA	50.00	41.67	25.00	23.53	21.88	NA	40.91	34.29	54.55	69.05	29.41	60.00	NA	24.24	25.00	43.33	0.00	0.00	NA	NA	70.00	41.67	NA	68.18	26.32	25.00	17.07	41.66	24.27	-17.39	0.133328	0.663989
K	cassette	ASAH1	chr8	-	chr8:17920740-17924728	chr8:17920740-17921965;chr8:17922041-17924728		chr8:17921966-17922040			98.98	100.00	100.00	100.00	100.00	NA	100.00	100.00	99.02	99.83	99.22	100.00	100.00	100.00	100.00	99.42	99.61	99.52	90.48	98.81	100.00	98.57	99.46	99.05	NA	99.12	99.24	99.19	100.00	100.00	96.94	97.71	100.00	98.61	99.40	99.48	100.00	99.05	-0.95	0.674471	0.882035
N	cassette	SLC26A11	chr17	+	chr17:78222057-78225127;chr17:78220449-78225127;chr17:78222057-78224971;chr17:78222474-78225127;chr17:78222474-78224971	chr17:78222474-78222952,chr17:78220449-78222952,chr17:78222057-78222952;chr17:78223087-78224971,chr17:78223087-78225127		chr17:78222953-78223086			100.00	86.49	82.35	85.00	77.05	100.00	100.00	100.00	NA	94.12	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	76.47	90.48	89.47	88.24	78.49	95.00	100.00	100.00	100.00	100.00	100.00	100.00	83.72	100.00	85.71	90.91	84.09	96.10	93.25	100.00	6.75	0.536086	0.809056
K	intron_retention	BCKDK	chr16	+	chr16:31121821-31122008				chr16:31121820-31121821;chr16:31122008-31122009		4.26	3.33	10.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	5.41	6.90	4.55	2.56	0.00	0.00	0.00	10.53	3.70	2.27	0.00	3.70	7.50	0.00	2.50	2.00	5.88	0.00	1.85	1.85	0.503094	1.000000
N	cassette	ADAP1,COX19	chr7	-	chr7:939128-943762	chr7:939128-940169;chr7:940254-943762		chr7:940170-940253			94.44	100.00	NA	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	84.62	81.82	100.00	100.00	95.24	100.00	100.00	0.00	0.488194	0.774715
N	alternative_acceptor	MTA2	chr11	-	chr11:62361513-62361730	chr11:62361547-62361730		chr11:62361513-62361546	chr11:62361512-62361513		3.28	0.86	1.25	1.75	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	2.99	1.11	1.92	2.02	0.00	0.00	0.00	1.12	0.00	0.00	0.00	2.82	5.22	2.38	0.00	0.98	0.00	0.43	1.41	0.98	0.335246	0.709013
K	jcn_only_AD	CDC37	chr19	-	chr19:10503834-10503955	chr19:10503834-10503934		chr19:10503935-10503955	chr19:10503955-10503956		97.89	99.20	97.08	96.63	96.48	96.67	98.04	99.25	95.80	96.12	96.52	96.48	98.30	95.24	94.02	95.73	96.27	94.34	98.00	97.19	97.10	96.33	97.64	97.09	100.00	96.80	97.13	98.43	97.63	97.46	98.22	98.66	98.39	96.58	100.00	97.23	98.34	97.54	-0.81	0.094842	0.639657
K	cassette	DCTN3	chr9	-	chr9:34614766-34617881	chr9:34614766-34616026;chr9:34616111-34617881		chr9:34616027-34616110			97.73	97.20	95.92	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	98.31	97.14	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	97.22	97.83	93.06	98.08	100.00	100.00	100.00	100.00	0.00	0.559286	0.824117
K	intron_retention		chrX	+	chrX:47106621-47106702				chrX:47106620-47106621;chrX:47106702-47106703		0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	8.33	0.00	NA	0.00	7.41	0.00	0.00	4.35	0.00	3.12	6.06	0.00	4.17	0.00	2.56	2.90	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.500319	1.000000
K	alternative_acceptor	SRRT	chr7	+	chr7:100485481-100485674	chr7:100485481-100485662		chr7:100485663-100485674	chr7:100485674-100485675		58.54	64.76	67.35	78.05	73.49	79.31	62.50	68.42	74.07	79.41	69.44	77.78	77.78	59.09	70.00	58.06	62.50	84.62	60.98	74.36	68.42	75.00	75.41	87.50	56.10	68.18	76.19	89.29	74.47	75.86	68.52	74.07	64.65	74.19	82.93	80.77	63.58	68.30	4.73	0.667245	0.880186
N	alternative_donor	RABL6	chr9	+	chr9:139726823-139730193	chr9:139728229-139730193		chr9:139726823-139728228	chr9:139726822-139726823		4.00	2.17	3.51	NA	3.57	NA	0.00	0.00	2.00	0.00	0.00	0.00	1.56	0.00	2.63	4.00	2.08	0.00	0.00	5.88	4.35	7.69	2.27	9.09	2.86	4.17	2.44	7.14	2.22	NA	5.88	2.44	5.26	11.11	3.33	11.54	1.86	4.08	2.22	0.349258	0.650093
K	jcn_only_AA	DNAJC4	chr11	+	chr11:63999437-63999865;chr11:63999437-63999901	chr11:63999437-63999981		chr11:63999866-63999901;chr11:63999902-63999981	chr11:63999901-63999902;chr11:63999981-63999982		0.00	4.92	4.00	0.00	0.00	10.53	2.27	0.00	8.33	6.25	3.23	6.25	2.86	8.33	10.00	0.00	0.00	14.29	0.00	0.00	5.41	6.25	6.98	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	2.49	0.00	-2.49	0.994456	0.997956
K	alternative_acceptor	RPL9	chr4	-	chr4:39460061-39460510	chr4:39460219-39460510		chr4:39460061-39460218	chr4:39460060-39460061		11.93	5.48	7.32	7.45	6.82	6.96	3.01	7.29	5.65	1.61	1.69	2.80	2.56	10.84	5.93	3.95	1.95	4.24	6.10	12.87	5.75	9.64	7.31	9.96	6.67	6.45	8.41	4.74	3.83	4.02	15.33	12.55	8.13	9.84	7.94	13.43	5.79	11.38	5.59	0.009542	0.466251
K	alternative_acceptor	ENY2	chr8	+	chr8:110351620-110352672;chr8:110351620-110352719	chr8:110351620-110352717		chr8:110352673-110352717;chr8:110352718-110352719	chr8:110352717-110352718;chr8:110352719-110352720		74.44	71.54	75.00	79.55	80.15	79.61	71.60	79.03	79.01	76.58	77.05	75.63	78.95	77.05	76.47	80.33	78.33	81.89	79.21	82.28	83.05	79.71	82.98	75.90	63.64	78.72	82.56	84.04	80.77	86.13	76.04	78.22	80.00	75.86	75.00	84.80	75.28	77.88	2.61	0.229179	0.683122
N	cassette	PTTG1IP	chr21	-	chr21:46271543-46281077;chr21:46271543-46285309	chr21:46271543-46276107;chr21:46276280-46281077,chr21:46276280-46285309		chr21:46276108-46276279			97.52	100.00	97.00	NA	100.00	100.00	100.00	99.38	100.00	100.00	100.00	98.75	100.00	100.00	100.00	100.00	99.20	98.88	100.00	100.00	97.14	100.00	98.36	98.55	100.00	100.00	98.31	100.00	100.00	100.00	93.18	96.72	100.00	100.00	100.00	96.72	100.00	99.69	-0.31	0.194924	0.709176
N	cassette	HAUS4	chr14	-	chr14:23416941-23424308;chr14:23416941-23419522	chr14:23416941-23417076;chr14:23417243-23419522,chr14:23417243-23424308		chr14:23417077-23417242			93.94	91.84	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	NA	90.48	NA	100.00	100.00	93.10	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	0.00	0.859783	0.951512
N	jcn_only_AA	M6PR	chr12	-	chr12:9093298-9095011;chr12:9093500-9095011;chr12:9093466-9095011	chr12:9094537-9095011		chr12:9093298-9093465;chr12:9093466-9093499;chr12:9093500-9094536	chr12:9093297-9093298;chr12:9093465-9093466;chr12:9093499-9093500		98.21	100.00	97.25	79.25	85.39	76.92	99.84	100.00	100.00	99.30	98.67	97.56	99.79	99.01	97.75	96.12	97.83	97.31	94.44	97.80	97.84	97.85	95.98	98.19	100.00	99.18	97.89	98.56	98.03	97.87	96.88	98.98	92.65	96.41	98.62	97.16	99.81	98.61	-1.20	0.630390	0.838179
K	cassette	GSK3B	chr3	-	chr3:119582453-119595259	chr3:119582453-119585436;chr3:119585476-119595259		chr3:119585437-119585475			NA	27.78	6.25	16.67	21.43	0.00	7.69	4.35	3.57	6.25	9.43	11.43	6.25	5.71	0.00	6.06	9.26	5.56	14.29	16.67	15.79	20.00	15.38	13.33	NA	9.52	12.00	0.00	22.22	16.67	7.69	16.67	9.09	9.09	12.00	6.38	9.09	7.69	-1.40	0.380579	0.709410
K	intron_retention	PKM	chr15	-	chr15:72495530-72499068				chr15:72495529-72495530;chr15:72499068-72499069		32.35	13.51	56.86	NA	7.69	NA	4.17	36.36	15.38	5.88	5.00	4.76	4.55	NA	20.00	6.45	4.00	8.33	0.00	31.25	12.50	13.33	24.24	23.81	NA	29.41	25.00	18.75	25.00	17.65	26.67	28.57	0.00	31.43	35.90	20.00	4.17	31.25	27.08	0.955523	1.000000
K	intron_retention		chr1	-	chr1:203148714-203148888				chr1:203148713-203148714;chr1:203148888-203148889		3.49	1.31	1.43	8.97	1.32	7.27	0.27	0.08	0.07	0.51	0.47	0.54	0.00	0.00	0.00	2.78	0.00	0.00	0.00	2.58	2.17	6.25	1.05	5.66	1.06	2.01	0.00	3.19	0.00	4.13	2.43	1.11	0.71	1.66	2.33	4.39	0.49	2.22	1.73	0.354822	1.000000
K	alternative_donor	SSBP1	chr7	+	chr7:141438304-141438923;chr7:141438394-141438923	chr7:141438211-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		83.33	83.33	87.50	83.33	76.00	84.62	87.23	87.50	73.33	88.10	88.89	91.89	91.53	84.21	75.68	85.15	91.76	85.71	84.62	82.61	77.14	78.79	82.81	88.46	NA	NA	82.14	87.50	85.33	80.00	75.00	84.00	87.50	77.50	73.81	85.71	87.23	83.33	-3.90	0.127369	0.540946
N	jcn_only_AA	LGALS9	chr17	+	chr17:25965381-25967570;chr17:25965381-25967668	chr17:25965381-25967597		chr17:25967571-25967597;chr17:25967598-25967668	chr17:25967597-25967598;chr17:25967668-25967669		96.11	96.02	100.00	92.00	94.59	95.45	94.81	95.86	94.08	95.17	95.40	95.77	95.82	96.38	96.31	96.73	94.87	97.26	95.08	96.36	92.21	95.18	95.32	97.58	95.65	95.68	96.97	96.63	96.57	97.64	91.93	94.59	90.77	94.67	96.43	96.34	95.37	95.98	0.62	0.530142	0.770087
K	alternative_last_exon	SFPQ	chr1	-	chr1:35643638-35652601	chr1:35650195-35652601	chr1:35643590-35643637	chr1:35648533-35650194			55.10	33.33	50.00	75.15	77.22	64.31	84.48	79.31	62.50	95.28	94.38	97.26	88.06	75.00	57.14	92.61	92.36	95.04	26.72	53.33	38.10	82.76	79.70	81.94	14.91	41.38	37.78	91.38	87.84	82.76	22.78	30.67	20.71	86.99	84.62	80.28	30.02	54.22	24.19	0.554737	0.699532
N	cassette	NDUFV3	chr21	+	chr21:44313492-44328973;chr21:44317158-44328973	chr21:44317158-44323291,chr21:44313492-44323291;chr21:44324387-44328973		chr21:44323292-44324386			27.78	30.00	38.46	34.55	44.29	25.35	46.99	31.25	45.71	53.57	45.22	25.00	52.94	33.33	48.84	62.89	41.55	31.91	23.33	21.05	23.08	50.00	44.78	31.71	38.30	30.77	48.15	59.38	60.34	44.23	12.50	25.00	16.00	43.18	41.18	36.59	34.15	29.27	-4.88	0.236180	0.709176
K	jcn_only_AD	NAPRT	chr8	-	chr8:144659910-144660030	chr8:144659910-144659985		chr8:144659986-144660030	chr8:144660030-144660031		100.00	98.11	100.00	NA	100.00	NA	100.00	95.24	100.00	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	NA	95.83	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.30	100.00	100.00	100.00	97.70	100.00	2.30	0.266485	0.657607
K	alternative_donor	STX4	chr16	+	chr16:31044844-31045333	chr16:31045157-31045333		chr16:31044844-31045156	chr16:31044843-31044844		92.31	86.11	90.91	45.61	60.87	43.75	60.00	94.12	92.59	60.53	67.19	58.93	74.29	100.00	88.46	76.47	80.56	53.49	80.00	89.47	75.68	64.06	79.07	60.00	77.78	92.86	100.00	60.00	66.67	62.86	81.25	86.84	73.91	39.87	50.68	46.97	76.03	92.59	16.55	0.004666	0.162441
K	intron_retention	AP003419.11	chr11	-	chr11:67120549-67120834				chr11:67120548-67120549;chr11:67120834-67120835		44.05	41.44	48.62	54.17	56.63	52.94	55.42	72.09	62.50	60.00	56.52	52.63	59.04	69.57	63.38	62.50	47.62	58.33	33.33	36.92	47.56	60.00	53.33	NA	56.99	45.83	50.00	45.83	63.38	75.00	34.43	35.43	36.90	44.83	47.27	46.15	48.43	44.94	-3.49	0.956423	1.000000
K	alternative_acceptor	DERL1	chr8	-	chr8:124031486-124033686	chr8:124031546-124033686		chr8:124031486-124031545	chr8:124031485-124031486		100.00	100.00	96.97	100.00	95.00	88.00	94.59	95.89	98.33	96.67	100.00	96.15	100.00	96.92	97.01	100.00	95.45	95.24	100.00	94.74	97.22	96.00	97.22	95.24	NA	96.72	92.11	92.31	92.00	92.86	95.65	92.50	94.74	93.94	100.00	94.83	100.00	96.31	-3.69	0.448465	0.755217
N	jcn_only_AA	SMPD1	chr11	+	chr11:6415272-6415427;chr11:6415272-6415407	chr11:6415272-6415448		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		0.00	0.00	0.00	0.00	0.00	NA	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	5.56	0.00	4.17	6.82	3.03	0.00	2.44	2.13	0.00	0.00	0.00	0.825143	0.929528
N	jcn_only_AA	AMFR	chr16	-	chr16:56396969-56397832	chr16:56397016-56397832		chr16:56396969-56397015	chr16:56396968-56396969		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	STARD3	chr17	+	chr17:37814776-37814974				chr17:37814775-37814776;chr17:37814974-37814975		16.67	18.87	16.87	0.00	20.41	NA	0.00	3.03	5.13	2.27	2.88	0.00	3.45	2.04	6.90	2.50	3.80	0.00	16.67	14.29	12.12	13.51	14.08	9.38	29.41	13.56	17.74	8.82	11.29	6.25	18.75	21.35	13.79	16.98	12.99	15.22	15.23	13.93	-1.30	0.891611	1.000000
K	cassette	POLB	chr8	+	chr8:42214911-42218812	chr8:42214911-42218613;chr8:42218721-42218812		chr8:42218614-42218720			0.00	0.00	0.00	NA	10.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	7.14	6.67	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	5.88	5.41	0.00	NA	NA	NA	0.00	2.94	2.94	0.184657	0.709176
K	jcn_only_AD	TREM1	chr6	-	chr6:41243969-41250132	chr6:41243969-41248698					95.56	100.00	93.67	95.00	90.91	93.10	100.00	96.15	88.24	84.62	87.50	100.00	92.00	94.44	93.10	100.00	84.62	100.00	100.00	95.77	96.49	NA	100.00	NA	87.10	96.92	95.79	90.48	92.98	100.00	96.43	94.52	100.00	94.74	100.00	96.67	100.00	95.96	-4.04	0.793609	0.902717
K	intron_retention	ARHGAP9	chr12	-	chr12:57868757-57869073				chr12:57868756-57868757;chr12:57869073-57869074		10.20	7.53	15.79	NA	17.14	NA	1.67	0.00	NA	NA	0.00	NA	2.94	NA	0.00	0.00	2.22	NA	9.09	3.23	3.23	NA	12.50	NA	19.44	0.00	13.11	10.00	14.29	NA	10.00	7.14	5.88	4.55	18.00	0.00	6.71	3.23	-3.48	0.470398	1.000000
K	intron_retention	ALPK1	chr4	+	chr4:113362262-113362358				chr4:113362261-113362262;chr4:113362358-113362359		10.00	12.20	15.79	NA	15.38	NA	30.00	20.00	36.84	NA	NA	NA	23.08	30.00	33.33	NA	NA	NA	13.33	20.00	11.90	NA	4.55	NA	14.29	21.05	18.75	NA	8.33	NA	13.04	18.03	12.50	NA	16.67	21.43	13.81	20.00	6.19	0.984052	1.000000
K	alternative_donor	ATRAID	chr2	+	chr2:27435336-27436044	chr2:27435476-27436044		chr2:27435336-27435475	chr2:27435335-27435336		7.41	7.02	12.50	11.11	10.53	NA	14.05	10.87	16.13	13.97	17.14	11.21	16.09	10.87	13.56	13.33	18.59	11.39	8.57	10.53	14.63	14.63	17.17	12.77	4.76	18.75	12.33	12.82	24.19	8.33	8.11	12.86	11.90	18.37	12.50	12.79	10.23	10.70	0.46	0.781096	0.919586
K	alternative_acceptor	EIF4A1,RP11-186B7.4,SENP3-EIF4A1	chr17	+	chr17:7477627-7477863;chr17:7477627-7477839	chr17:7477627-7477865		chr17:7477840-7477863;chr17:7477864-7477865	chr17:7477863-7477864;chr17:7477865-7477866		1.78	0.00	1.97	3.94	0.00	5.71	2.78	2.17	2.42	2.51	3.23	2.26	1.82	1.45	0.00	2.56	3.70	1.77	0.00	1.35	0.00	2.95	2.70	3.24	0.00	2.82	3.40	2.82	3.06	0.00	2.20	1.83	0.00	3.51	3.67	2.37	0.00	1.98	1.98	0.066111	0.584083
K	alternative_acceptor	BRD7	chr16	-	chr16:50354686-50355892	chr16:50354689-50355892		chr16:50354686-50354688	chr16:50354685-50354686		16.39	17.50	21.74	16.67	16.67	21.43	20.00	18.52	24.24	22.22	21.62	30.43	26.67	15.38	18.42	22.50	31.43	25.00	18.42	16.22	22.86	17.86	21.05	17.86	0.00	17.39	17.78	30.00	25.81	20.93	18.18	17.31	10.71	16.13	26.67	20.00	17.96	16.89	-1.07	0.713920	0.891525
N	alternative_donor	MAD1L1	chr7	-	chr7:1976534-1979373;chr7:1976534-1997263	chr7:1976534-1979723		chr7:1979374-1979723;chr7:1979724-1997263	chr7:1979723-1979724;chr7:1997263-1997264		6.25	2.67	0.00	NA	2.56	5.88	0.00	NA	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	2.04	NA	2.38	NA	0.00	0.00	2.50	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.686612	0.866509
K	cassette	ASPH	chr8	-	chr8:62593596-62596597	chr8:62593596-62594997;chr8:62595043-62596597		chr8:62594998-62595042			14.29	36.36	25.37	27.78	40.91	NA	17.97	9.09	7.69	22.78	23.76	14.29	12.81	14.93	16.07	21.88	15.42	19.18	25.00	9.38	9.09	14.55	14.63	14.81	NA	17.86	25.58	26.15	23.73	36.36	22.22	12.50	13.33	14.29	14.29	14.29	17.97	14.61	-3.36	0.233529	0.709176
N	jcn_only_AD	HSCB	chr22	+	chr22:29138320-29139869;chr22:29138369-29139869;chr22:29138926-29139869;chr22:29138521-29139869	chr22:29138717-29139869		chr22:29138320-29138368;chr22:29138369-29138520;chr22:29138521-29138716;chr22:29138717-29138925	chr22:29138319-29138320;chr22:29138368-29138369;chr22:29138520-29138521;chr22:29138716-29138717		52.63	0.00	45.45	NA	NA	NA	25.00	66.67	42.22	8.33	7.14	4.17	26.32	66.67	33.33	NA	25.00	10.00	75.00	74.07	70.37	30.00	26.67	45.45	NA	62.50	57.14	9.09	11.76	40.74	63.16	50.00	25.00	NA	NA	22.22	25.00	64.91	39.91	0.047892	0.500386
K	intron_retention	FCGR2B	chr1	+	chr1:161643864-161647117				chr1:161643863-161643864;chr1:161647117-161647118		2.56	1.77	6.42	0.00	0.00	0.00	1.60	0.44	0.00	0.00	0.00	0.00	1.43	0.48	0.00	0.00	0.00	0.00	0.90	1.89	2.63	0.85	0.95	0.00	0.00	0.00	4.03	2.08	0.00	0.00	0.00	4.26	0.00	0.00	0.00	0.70	1.17	0.46	-0.71	0.970563	1.000000
K	alternative_last_exon	LIMK2	chr22	+	chr22:31671295-31672379;chr22:31671295-31674282	chr22:31671295-31672774	chr22:31674283-31676066	chr22:31672775-31673624			12.28	20.00	10.81	11.43	14.29	11.16	8.33	10.86	8.80	11.54	10.00	15.38	9.09	12.29	11.22	12.86	18.75	21.59	17.65	9.64	12.03	9.62	11.11	10.71	NA	11.70	11.59	10.40	8.33	11.60	13.91	14.38	11.76	12.73	8.33	11.89	11.76	11.99	0.23	0.541547	0.690115
K	alternative_first_exon	SSBP1	chr7	+	chr7:141438376-141438923;chr7:141438211-141438923,chr7:141438304-141438923,chr7:141438394-141438923	chr7:141438479-141438923,chr7:141438799-141438923	chr7:141438158-141438210	chr7:141438407-141438478			0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	1.75	0.00	0.00	0.00	0.363217	0.544826
K	cassette	DBNL	chr7	+	chr7:44089880-44096355;chr7:44089880-44092465	chr7:44089880-44091428;chr7:44091542-44096355,chr7:44091542-44092465		chr7:44091429-44091541			95.08	88.10	94.83	90.91	90.48	NA	99.35	98.86	99.09	99.04	97.44	97.59	98.89	99.39	99.33	100.00	99.06	98.90	93.33	98.33	94.12	95.45	92.98	94.29	83.33	96.70	88.00	95.45	98.33	100.00	96.97	94.44	91.67	94.44	95.92	97.01	92.50	97.65	5.15	0.101524	0.683336
K	intron_retention	COPS6	chr7	+	chr7:99688573-99688660				chr7:99688572-99688573;chr7:99688660-99688661		2.13	4.07	5.33	0.00	3.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	2.74	0.00	7.25	6.25	6.12	0.00	6.35	0.00	4.48	0.00	3.57	4.76	4.55	0.00	3.23	1.96	4.21	0.00	-4.21	0.417662	1.000000
K	intron_retention		chr22	+	chr22:50961596-50961663				chr22:50961595-50961596;chr22:50961663-50961664		16.67	20.91	7.69	2.86	5.75	4.30	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	7.32	12.00	17.31	12.50	7.32	5.56	5.92	15.79	9.09	5.56	2.78	5.26	28.89	20.75	22.22	0.00	9.52	12.00	6.62	16.23	9.61	0.315588	1.000000
N	alternative_acceptor		chr17	+	chr17:48755581-48756713;chr17:48755581-48756716;chr17:48755581-48755877;chr17:48755581-48757145	chr17:48755581-48757158		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		64.86	66.67	65.56	NA	57.69	NA	97.22	100.00	NA	100.00	94.59	100.00	90.91	NA	92.86	100.00	94.12	NA	69.23	60.87	73.33	95.45	73.75	95.83	50.00	51.61	56.36	92.86	66.67	100.00	60.87	58.70	93.33	75.00	58.62	90.32	80.07	60.87	-19.20	0.390935	0.709013
N	cassette	RIC8A	chr11	+	chr11:212760-213298	chr11:212760-212836;chr11:212982-213298		chr11:212837-212981			98.36	89.80	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	96.61	91.67	100.00	97.92	98.25	100.00	99.18	-0.82	0.940225	0.985246
N	cassette	LAIR1	chr19	-	chr19:54868576-54872522;chr19:54868576-54872616	chr19:54868576-54871449;chr19:54871680-54872616,chr19:54871680-54872522		chr19:54871450-54871679			97.19	94.44	96.74	NA	96.15	NA	100.00	99.15	98.70	97.22	98.26	100.00	42.74	47.89	45.45	51.04	40.56	64.29	60.00	55.46	55.00	55.88	46.90	60.00	NA	97.55	98.16	100.00	98.46	100.00	98.02	95.61	92.31	96.10	98.82	98.70	92.31	97.37	5.06	0.763062	0.925284
N	cassette	PSMC3	chr11	-	chr11:47441961-47444124	chr11:47441961-47442181;chr11:47442279-47444124		chr11:47442182-47442278			100.00	100.00	96.67	100.00	98.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	98.64	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	97.70	94.37	100.00	97.56	97.62	100.00	100.00	0.00	0.973613	0.994559
N	cassette	UBE2Q1	chr1	-	chr1:154522946-154523872;chr1:154522946-154524246	chr1:154522946-154523413;chr1:154523481-154523872,chr1:154523481-154524246		chr1:154523414-154523480			98.97	100.00	96.40	93.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.40	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	98.11	100.00	100.00	96.63	98.70	97.54	100.00	100.00	0.00	0.197082	0.709176
K	alternative_last_exon	KLC1	chr14	+	chr14:104158763-104166991	chr14:104158763-104159889	chr14:104166992-104167064	chr14:104159890-104160174			88.00	86.36	84.00	91.67	90.48	100.00	93.33	96.30	94.74	96.97	92.00	89.47	95.45	95.35	100.00	90.00	96.97	100.00	86.36	100.00	90.91	94.44	95.83	96.00	93.75	96.77	70.59	100.00	100.00	100.00	93.10	96.00	86.96	97.44	96.15	95.65	90.14	95.82	5.68	0.086776	0.298896
K	jcn_only_AD	RPS14	chr5	-	chr5:149827299-149829048;chr5:149827299-149829054	chr5:149827299-149829265		chr5:149829049-149829054;chr5:149829055-149829265	chr5:149829054-149829055;chr5:149829265-149829266		99.12	97.97	98.73	98.42	98.96	99.24	98.39	95.73	96.62	93.18	96.84	98.19	99.29	98.99	94.84	96.81	94.99	96.74	98.34	96.40	97.64	98.51	99.05	98.87	100.00	97.70	98.34	98.87	99.90	99.72	95.71	98.16	97.71	98.08	97.60	98.32	98.37	97.05	-1.31	0.103135	0.643330
N	alternative_acceptor	FRA10AC1	chr10	-	chr10:95430606-95436409;chr10:95431847-95436409	chr10:95435459-95436409		chr10:95430606-95431846;chr10:95431847-95435458	chr10:95430605-95430606;chr10:95431846-95431847		5.56	0.00	5.26	0.00	0.00	0.00	0.00	NA	10.00	NA	10.00	NA	7.14	NA	NA	NA	NA	NA	1.39	5.26	2.22	NA	6.67	NA	0.00	7.69	3.70	NA	0.00	0.00	5.88	2.78	1.20	6.25	7.14	5.88	0.60	5.72	5.12	0.009343	0.466251
K	jcn_only_AA	SEC13	chr3	-	chr3:10342832-10345709;chr3:10335021-10345709	chr3:10343059-10345709		chr3:10335021-10342831;chr3:10342832-10343058	chr3:10335020-10335021;chr3:10342831-10342832		91.18	82.55	93.44	79.71	88.17	70.45	75.42	84.62	94.87	70.00	77.92	70.79	82.20	88.57	87.18	78.95	78.40	73.27	77.88	91.89	80.80	80.70	82.00	87.93	68.00	100.00	91.53	74.00	81.25	73.49	81.08	90.79	79.56	83.53	78.82	78.85	78.72	89.88	11.16	0.006582	0.450187
K	intron_retention	B3GAT3	chr11	-	chr11:62384269-62384458				chr11:62384268-62384269;chr11:62384458-62384459		3.57	6.58	6.76	5.88	2.94	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	4.00	0.00	9.52	4.26	15.38	0.00	0.00	2.74	0.00	2.44	6.67	0.00	6.67	2.44	0.00	0.00	3.57	1.22	0.00	-1.22	0.883823	1.000000
K	intron_retention	CSK	chr15	+	chr15:75075062-75090573				chr15:75075061-75075062;chr15:75090573-75090574		0.00	3.12	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	0.00	7.89	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_last_exon	RP11-580I16.2	chr17	-	chr17:45701433-45713877,chr17:45711531-45713877;chr17:45703994-45713877;chr17:45681485-45713877	chr17:45699454-45713877	chr17:45703372-45703993;chr17:45681226-45681484	chr17:45699208-45699453			71.43	96.00	66.67	92.86	88.89	100.00	65.38	20.00	50.00	85.71	75.00	NA	66.67	70.83	30.00	50.00	76.92	NA	95.45	56.25	90.91	75.00	82.35	NA	100.00	68.18	50.00	70.00	66.67	88.89	72.73	60.00	91.30	73.33	70.83	38.89	93.38	69.50	-23.87	0.034783	0.223089
K	alternative_acceptor	CTSA,PCMTD2	chr20	+	chr20:44523381-44523471	chr20:44523381-44523461		chr20:44523462-44523471	chr20:44523471-44523472		100.00	89.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.48	90.15	93.48	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.91	93.82	92.38	100.00	100.00	100.00	96.19	100.00	3.81	0.381107	0.709013
K	cassette	SLC22A18	chr11	+	chr11:2939326-2940536	chr11:2939326-2940135;chr11:2940239-2940536		chr11:2940136-2940238			0.00	1.52	2.78	0.00	3.03	0.00	4.17	4.08	2.56	7.69	5.26	6.67	2.33	3.45	0.00	6.25	0.00	NA	1.52	2.38	0.00	0.00	2.56	0.00	4.65	3.12	2.00	NA	2.22	0.00	1.61	0.00	2.00	4.76	0.00	0.00	2.17	2.75	0.58	0.759361	0.925284
K	alternative_acceptor	TRAPPC4	chr11	+	chr11:118890964-118892583	chr11:118890964-118892469		chr11:118892470-118892583	chr11:118892583-118892584		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	ACP2	chr11	-	chr11:47261801-47264273;chr11:47261435-47264273;chr11:47261750-47264273;chr11:47263622-47264273	chr11:47261718-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		3.30	4.49	3.65	0.00	7.29	5.88	3.73	2.10	2.95	5.38	7.32	2.22	4.17	3.09	2.57	3.73	5.46	5.80	2.82	2.05	4.71	3.08	3.97	3.45	12.50	2.87	2.30	2.86	5.26	4.95	2.62	5.08	7.25	2.53	3.96	2.40	4.33	2.75	-1.58	0.084281	0.663989
K	intron_retention		chr22	-	chr22:39709316-39709638				chr22:39709315-39709316;chr22:39709638-39709639		2.99	0.09	1.51	0.58	0.34	0.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.51	4.67	1.10	1.04	0.71	0.96	0.19	0.00	1.42	0.17	0.27	0.62	6.47	5.49	1.13	0.30	0.28	0.60	0.14	1.50	1.35	0.264921	1.000000
K	alternative_last_exon	EMP1	chr12	+	chr12:13366510-13369377	chr12:13366510-13366614	chr12:13369378-13369707	chr12:13366615-13367806			9.14	0.43	14.41	0.13	0.31	0.12	24.18	22.50	22.81	24.87	25.81	25.97	24.64	24.96	25.86	25.75	26.47	24.11	0.00	10.69	0.74	8.64	7.44	14.85	1.15	11.59	8.96	6.15	5.04	2.52	3.47	7.24	0.00	11.17	14.89	13.95	0.79	11.14	10.35	0.405450	0.567228
N	coord_cassette	ARRB2	chr17	+	chr17:4623595-4624240	chr17:4623595-4623687;chr17:4623768-4623844;chr17:4623936-4624240		chr17:4623688-4623767;chr17:4623845-4623935			99.28	100.00	97.67	97.22	98.68	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	100.00	100.00	98.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.81	96.72	100.00	100.00	100.00	100.00	0.00	0.292643	0.643829
N	jcn_only_AD	GAK,INPP4B	chr4	-	chr4:859033-860151	chr4:859033-859131		chr4:859132-860151	chr4:860151-860152		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.94	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	IRF9,RP11-468E2.4	chr14	+	chr14:24630548-24631352	chr14:24631100-24631352		chr14:24630548-24631099	chr14:24630547-24630548		5.71	0.00	0.00	NA	NA	NA	3.39	6.25	2.67	3.03	0.00	0.00	0.00	5.88	3.76	0.00	0.00	2.13	NA	4.05	0.00	3.03	0.00	1.20	0.00	11.65	1.22	4.29	0.00	0.00	0.00	5.43	NA	3.70	0.00	2.75	0.00	5.79	5.79	0.029118	0.391361
K	intron_retention		chr11	+	chr11:67058993-67059073				chr11:67058992-67058993;chr11:67059073-67059074		2.38	6.12	3.61	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	7.14	4.00	0.00	NA	2.17	NA	17.24	0.00	0.00	NA	0.00	NA	0.00	0.00	8.16	0.00	0.00	0.00	6.63	0.00	-6.63	0.259461	1.000000
K	jcn_only_AD	KLC1	chr14	+	chr14:104145856-104153417;chr14:104145883-104153417	chr14:104151374-104153417					2.13	9.23	9.09	6.90	5.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	2.33	1.92	0.00	4.76	5.26	4.55	4.26	5.56	6.82	0.00	0.00	5.56	2.86	2.86	2.00	0.00	5.77	5.26	1.92	0.00	2.56	6.82	2.15	3.34	1.19	0.944403	0.969552
N	alternative_acceptor	ZMIZ2	chr7	+	chr7:44805179-44805762;chr7:44805179-44805565;chr7:44805179-44809053	chr7:44805179-44805886		chr7:44805566-44805762;chr7:44805763-44805886;chr7:44805887-44809053	chr7:44805762-44805763;chr7:44805886-44805887;chr7:44809053-44809054		1.52	2.99	2.68	5.71	3.92	11.36	4.17	2.17	1.05	4.35	3.85	0.00	4.00	1.39	0.80	2.94	3.33	0.00	4.76	1.39	1.72	3.03	1.37	3.03	4.55	1.15	0.72	2.94	2.33	4.76	1.22	0.60	7.55	4.00	1.32	1.39	4.36	1.39	-2.97	0.003186	0.363177
K	cassette	RENBP	chrX	-	chrX:153201030-153205554	chrX:153201030-153201456;chrX:153201559-153205554		chrX:153201457-153201558			4.17	2.64	4.00	2.47	1.64	2.59	3.09	9.52	0.00	3.03	1.59	4.00	3.31	0.00	0.00	1.20	3.66	3.33	0.61	0.00	1.35	0.00	0.00	7.14	3.05	3.45	3.57	0.00	3.74	3.23	6.67	10.34	4.62	2.13	3.23	4.35	3.07	3.81	0.74	0.527605	0.803220
N	cassette	ZBTB8OS	chr1	-	chr1:33087550-33099245;chr1:33093146-33100368;chr1:33093146-33116033;chr1:33093146-33099245;chr1:33087550-33116033;chr1:33093146-33116029	chr1:33093146-33097427,chr1:33087550-33097427;chr1:33097481-33099245,chr1:33097481-33116033,chr1:33097481-33116029,chr1:33097481-33100368		chr1:33097428-33097480			71.43	58.62	62.22	58.33	65.12	57.14	64.10	60.00	57.58	58.70	61.02	56.67	63.41	75.00	70.00	60.00	57.35	50.00	62.50	62.96	67.44	70.00	67.92	57.14	70.19	58.62	59.57	60.87	70.31	57.89	48.28	57.89	64.86	60.61	79.41	58.62	63.75	61.48	-2.27	0.778635	0.934744
N	intron_retention		chr20	-	chr20:32868457-32868832				chr20:32868456-32868457;chr20:32868832-32868833		92.59	88.00	84.85	78.57	86.61	80.85	92.91	86.67	90.91	97.59	93.92	94.03	94.93	100.00	93.10	95.24	94.61	92.47	82.24	89.47	94.12	92.45	88.28	81.82	88.00	NA	100.00	100.00	92.70	91.30	95.45	91.67	81.48	90.41	90.62	87.00	88.00	92.59	4.59	0.732089	1.000000
K	jcn_only_AD	GRINA	chr8	+	chr8:145064480-145065367;chr8:145065076-145065367	chr8:145064368-145065367		chr8:145064368-145064479;chr8:145064480-145065075	chr8:145064367-145064368;chr8:145064479-145064480		81.91	76.47	78.35	73.33	71.43	NA	88.52	84.81	81.43	82.38	84.12	80.46	86.09	82.94	80.67	86.55	82.44	76.31	NA	79.64	78.47	86.02	86.88	86.62	72.22	82.30	78.27	89.39	88.24	87.84	85.23	83.64	NA	81.50	83.13	80.42	81.28	82.62	1.34	0.648831	0.818639
K	jcn_only_AA	LRRC75A-AS1,MYO15B	chr17	+	chr17:16342729-16343424;chr17:16342729-16343498;chr17:16342729-16342973;chr17:16342729-16342894	chr17:16342729-16342841					8.33	5.10	24.29	10.47	7.84	11.11	15.42	33.33	28.30	15.49	15.32	15.93	4.65	9.68	12.04	6.17	5.23	5.02	13.33	25.00	23.08	17.24	15.14	22.12	7.50	25.00	15.49	7.94	8.80	10.00	16.67	21.28	7.69	10.33	9.28	11.26	7.60	20.84	13.24	0.044935	0.663989
N	jcn_only_AA	FIG4	chr6	+	chr6:110107653-110110796	chr6:110107653-110110000		chr6:110110001-110110796	chr6:110110796-110110797		0.00	0.00	16.13	0.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	9.09	NA	0.00	0.00	11.11	13.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_donor	AC010642.1,ERVK3-1	chr19	+	chr19:58823770-58826113	chr19:58823829-58826113		chr19:58823770-58823828	chr19:58823769-58823770		100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	97.14	100.00	87.50	94.74	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.65	100.00	100.00	100.00	96.30	100.00	100.00	0.00	0.373901	0.650093
N	jcn_only_AA	XPC	chr3	-	chr3:14188169-14188789;chr3:14187660-14188789	chr3:14187114-14188789		chr3:14187114-14187659;chr3:14187660-14188168	chr3:14187113-14187114;chr3:14187659-14187660		10.71	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	4.00	0.00	0.00	5.00	0.00	0.00	0.00	0.541126	0.778326
K	intron_retention	MARS	chr12	+	chr12:57909775-57910027				chr12:57909774-57909775;chr12:57910027-57910028		17.39	12.95	18.06	19.61	17.72	21.21	2.00	2.44	4.08	0.00	5.97	0.00	3.70	0.00	8.49	3.57	3.51	0.00	11.54	12.90	15.00	17.24	18.46	35.48	11.11	12.50	15.00	15.79	15.07	14.29	13.46	19.54	13.04	27.78	21.28	26.00	11.32	12.70	1.38	0.694383	1.000000
K	cassette	GUSB	chr7	-	chr7:65444529-65445210	chr7:65444529-65444713;chr7:65444899-65445210		chr7:65444714-65444898			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	99.10	100.00	98.96	100.00	98.10	100.00	100.00	99.09	98.99	100.00	NA	89.47	100.00	96.43	96.67	100.00	NA	100.00	100.00	100.00	98.90	100.00	100.00	100.00	100.00	98.00	93.88	100.00	100.00	100.00	0.00	0.509107	0.789905
K	intron_retention		chr14	+	chr14:24607327-24607404				chr14:24607326-24607327;chr14:24607404-24607405		4.44	2.88	3.20	2.42	2.87	2.97	0.47	0.75	0.47	0.00	0.68	1.32	0.00	0.00	0.55	0.45	0.65	2.33	2.09	2.86	2.00	5.98	2.14	9.32	1.50	4.80	3.06	6.49	2.42	4.63	5.95	4.97	2.82	5.63	3.03	6.18	1.79	3.65	1.86	0.433293	1.000000
N	alternative_acceptor	MCOLN1	chr19	+	chr19:7594599-7595320;chr19:7594599-7595255	chr19:7594599-7595171		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		84.78	87.67	85.19	88.24	90.48	75.00	87.18	94.74	90.91	74.63	70.37	73.85	76.83	87.50	90.00	77.94	72.22	68.85	81.25	85.29	75.86	80.95	82.46	100.00	93.02	92.00	92.00	84.00	80.60	81.82	80.00	88.46	77.94	82.76	80.56	85.71	84.22	86.40	2.18	0.337768	0.709013
K	intron_retention	PLEKHM2	chr1	+	chr1:16059224-16060291				chr1:16059223-16059224;chr1:16060291-16060292		5.26	8.56	5.29	2.76	1.93	3.17	1.33	1.94	0.00	0.00	0.61	0.00	0.00	1.21	0.96	1.55	0.72	0.00	4.96	5.99	3.90	5.23	3.40	2.84	4.67	4.22	4.60	2.55	3.27	2.01	8.22	6.39	7.07	4.49	3.29	3.27	4.81	4.74	-0.07	0.959952	1.000000
K	alternative_donor	RPL14	chr3	+	chr3:40499239-40499380;chr3:40498855-40499380	chr3:40498966-40499380		chr3:40498855-40498965;chr3:40498966-40499238	chr3:40498854-40498855;chr3:40498965-40498966		6.67	3.33	10.45	4.55	3.31	6.06	2.73	6.25	8.70	3.43	1.62	2.72	1.73	7.14	8.20	2.93	1.36	2.56	1.37	0.00	5.95	2.91	3.31	5.94	3.51	4.17	10.53	3.85	3.36	3.77	14.29	11.29	3.66	3.80	4.05	3.94	3.03	6.46	3.43	0.111078	0.520337
K	intron_retention		chr7	+	chr7:150772863-150773099				chr7:150772862-150772863;chr7:150773099-150773100		3.45	6.62	5.83	2.97	3.32	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	1.28	0.00	0.00	0.00	3.50	0.81	3.26	1.67	4.08	2.50	7.69	0.85	3.87	1.37	2.29	2.22	6.33	2.17	3.60	4.59	1.98	3.48	3.55	0.87	-2.68	0.770634	1.000000
K	jcn_only_AD	ZMIZ2	chr7	+	chr7:44805179-44805762	chr7:44805656-44805762		chr7:44805179-44805655	chr7:44805178-44805179		12.50	0.00	21.43	NA	0.00	NA	11.76	25.64	17.39	15.00	8.70	35.29	33.33	14.52	19.59	11.11	16.13	31.58	26.67	18.00	28.57	15.38	3.70	23.53	0.00	43.48	16.00	14.29	13.33	25.00	29.27	16.00	NA	22.22	12.50	18.75	11.76	21.82	10.06	0.285470	0.657607
N	cassette	CIB1	chr15	-	chr15:90774740-90776900	chr15:90774740-90775450;chr15:90775560-90776900		chr15:90775451-90775559			100.00	100.00	97.41	98.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.04	100.00	97.08	100.00	97.66	100.00	100.00	100.00	97.20	100.00	100.00	100.00	100.00	95.12	94.49	96.92	100.00	98.90	100.00	100.00	0.00	0.284593	0.709176
K	intron_retention	MUS81	chr11	+	chr11:65632617-65632690				chr11:65632616-65632617;chr11:65632690-65632691		2.50	0.00	6.82	0.00	4.17	NA	0.00	0.00	0.00	0.00	0.00	NA	4.17	0.00	0.00	0.00	3.12	NA	10.00	13.04	13.04	7.69	10.53	15.38	14.29	8.00	7.69	8.33	2.63	0.00	5.88	13.79	14.29	6.90	16.67	7.14	7.08	4.19	-2.90	0.988175	1.000000
K	jcn_only_AA	CDK16,SLC25A5	chrX	+	chrX:47086499-47086579	chrX:47086499-47086558		chrX:47086559-47086579	chrX:47086579-47086580		0.00	0.00	11.63	13.64	9.09	9.76	0.00	3.33	1.37	0.00	2.56	5.56	4.76	0.00	1.55	1.64	0.00	0.00	6.25	12.00	8.11	8.00	7.14	10.00	0.00	7.32	7.89	2.63	7.69	10.00	12.82	20.37	11.54	8.82	9.68	6.17	2.38	5.33	2.95	0.492634	0.749207
K	intron_retention		chr15	-	chr15:75650686-75650802				chr15:75650685-75650686;chr15:75650802-75650803		4.76	0.00	10.42	5.88	3.33	9.09	0.00	NA	0.00	0.00	0.00	0.00	2.70	0.00	8.70	0.00	0.00	NA	2.38	6.45	3.57	0.00	4.00	6.45	0.00	12.50	3.03	3.85	2.50	0.00	11.76	10.00	5.77	4.65	5.77	5.33	1.19	6.45	5.26	0.297270	1.000000
K	intron_retention		chr3	+	chr3:9985200-9986048				chr3:9985199-9985200;chr3:9986048-9986049		0.00	38.89	36.36	NA	NA	NA	0.00	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	8.33	NA	9.09	NA	18.18	16.67	8.33	NA	7.69	0.00	0.00	5.00	0.00	NA	18.18	0.00	0.00	0.00	0.00	0.922292	1.000000
N	cassette	AK2	chr1	-	chr1:33480196-33502336;chr1:33487063-33490042	chr1:33480196-33487193,chr1:33487063-33487193;chr1:33487305-33490042,chr1:33487305-33502336		chr1:33487194-33487304			96.97	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.634552	0.867338
K	intron_retention		chr16	-	chr16:424893-425132				chr16:424892-424893;chr16:425132-425133		7.45	5.56	9.30	NA	2.63	NA	0.00	0.84	2.25	0.00	0.00	0.00	1.12	1.83	0.88	1.54	0.00	0.00	5.88	4.41	0.00	8.33	4.11	0.00	0.00	2.65	6.45	0.00	3.77	6.67	4.17	5.62	4.35	6.56	9.33	5.41	2.73	3.41	0.68	0.346691	1.000000
K	intron_retention		chr19	-	chr19:51009830-51013542				chr19:51009829-51009830;chr19:51013542-51013543		8.33	0.00	14.81	0.00	2.38	7.69	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	6.25	5.26	5.66	0.00	5.00	7.14	18.92	9.52	16.67	NA	0.00	6.25	6.67	5.56	5.13	0.00	7.69	0.00	5.69	7.50	1.81	0.819787	1.000000
N	jcn_only_AA	AP1B1	chr22	-	chr22:29727906-29730253;chr22:29728044-29730253;chr22:29729534-29730253	chr22:29727875-29730253		chr22:29727875-29727905;chr22:29727906-29728043;chr22:29728044-29729533	chr22:29727874-29727875;chr22:29727905-29727906;chr22:29728043-29728044		2.63	0.00	0.00	0.00	1.83	NA	0.00	0.00	0.00	0.00	0.84	0.00	0.00	1.08	2.38	0.00	0.51	0.00	1.89	0.00	0.00	0.00	1.13	1.67	5.08	0.00	2.53	2.33	0.80	0.00	0.00	2.47	0.00	0.00	1.25	1.71	0.00	0.00	0.00	0.584000	0.807667
K	cassette	LST1	chr6	+	chr6:31555096-31556339;chr6:31555096-31556294;chr6:31555511-31556273;chr6:31555096-31556273;chr6:31555511-31556294;chr6:31555511-31556339	chr6:31555096-31555720,chr6:31555511-31555720;chr6:31555744-31556273,chr6:31555744-31556294,chr6:31555744-31556339		chr6:31555721-31555743			22.22	22.56	12.50	17.23	16.38	19.97	47.30	35.78	38.10	37.18	38.99	37.34	47.18	32.88	33.33	48.85	48.39	45.90	22.47	23.91	25.21	21.19	22.08	20.13	29.72	25.71	14.91	38.55	34.45	37.83	30.19	20.79	17.31	18.44	17.94	18.50	26.14	27.95	1.81	0.662502	0.876335
N	jcn_only_AA	FAM20C	chr7	+	chr7:208977-286380;chr7:208977-218268;chr7:208977-227647	chr7:208977-209193		chr7:209194-218268;chr7:218269-227647;chr7:227648-286380	chr7:218268-218269;chr7:227647-227648;chr7:286380-286381		0.00	20.00	0.00	0.00	6.76	NA	0.00	0.00	0.00	2.15	1.00	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00	3.17	5.97	2.82	0.00	0.00	NA	0.00	0.00	4.11	1.67	5.00	0.00	0.00	0.00	1.94	0.00	0.00	0.00	0.00	0.00	0.436528	0.704771
K	alternative_acceptor	LSS	chr21	-	chr21:47608736-47611794	chr21:47611150-47611794		chr21:47608736-47611149	chr21:47608735-47608736		97.03	100.00	95.59	95.60	100.00	95.74	100.00	98.95	98.60	97.89	100.00	100.00	100.00	100.00	99.47	100.00	100.00	100.00	94.59	95.56	95.65	95.28	100.00	97.28	100.00	99.62	95.06	98.11	100.00	98.85	95.73	94.39	88.00	96.18	93.94	97.40	100.00	97.99	-2.01	0.752244	0.908513
N	alternative_acceptor	KIAA2013	chr1	-	chr1:11980386-11982692;chr1:11980390-11982692	chr1:11980592-11982692		chr1:11980386-11980389;chr1:11980390-11980591	chr1:11980385-11980386;chr1:11980389-11980390		5.56	3.93	5.19	5.00	3.85	5.26	0.00	0.00	0.00	4.76	2.56	0.00	0.00	0.00	3.92	3.45	2.70	0.00	4.80	4.88	3.92	5.88	5.56	21.43	3.45	4.65	4.82	4.00	2.53	0.00	8.51	8.00	6.79	2.50	7.58	7.50	3.69	4.77	1.08	0.670009	0.880186
K	jcn_only_AA	PLIN3	chr19	-	chr19:4839546-4844679	chr19:4839549-4844679		chr19:4839546-4839548	chr19:4839545-4839546		94.59	100.00	96.05	100.00	95.29	NA	96.83	94.55	97.00	97.66	95.71	94.25	95.38	94.55	96.39	95.93	94.57	97.56	100.00	94.92	95.65	96.61	99.16	100.00	85.71	97.64	95.97	95.83	96.77	95.00	93.33	96.62	100.00	96.63	95.45	95.04	98.41	94.57	-3.84	0.575867	0.800394
N	cassette	THEMIS2	chr1	+	chr1:28203240-28209023;chr1:28203240-28211805;chr1:28206684-28211805;chr1:28206566-28211805	chr1:28206684-28208481,chr1:28206566-28208481,chr1:28203240-28208481;chr1:28208637-28209023,chr1:28208637-28211805		chr1:28208482-28208636			26.87	10.71	21.72	NA	17.86	NA	68.18	74.38	59.13	73.68	75.00	76.06	75.00	86.92	79.41	82.46	86.57	92.86	11.11	27.60	11.25	30.77	27.66	51.85	30.00	34.60	20.00	61.70	39.39	55.56	26.92	27.50	10.34	46.51	42.31	59.04	20.55	31.10	10.55	0.484241	0.773550
K	alternative_last_exon	MBOAT7	chr19	-	chr19:54678126-54687403	chr19:54684851-54687403	chr19:54677107-54678125	chr19:54684490-54684850			99.17	90.00	96.79	NA	90.00	10.00	97.67	99.20	98.70	97.14	97.30	100.00	96.55	98.96	97.87	94.44	100.00	92.31	50.00	98.88	96.67	90.00	96.55	92.86	76.19	99.22	99.32	94.74	96.30	93.33	97.06	95.77	NA	92.86	93.75	97.06	90.00	99.06	9.06	0.133946	0.343642
N	alternative_acceptor		chr19	+	chr19:5664451-5666345;chr19:5664451-5666481	chr19:5664451-5667056		chr19:5666346-5666481;chr19:5666482-5667056	chr19:5666481-5666482;chr19:5667056-5667057		94.05	97.84	91.92	98.06	97.74	97.14	100.00	100.00	100.00	100.00	100.00	100.00	98.15	100.00	95.56	100.00	100.00	100.00	97.42	95.71	97.16	96.83	95.00	91.53	98.68	93.62	92.93	98.21	97.53	97.85	96.12	95.91	97.55	92.75	95.45	90.48	98.00	95.91	-2.08	0.211759	0.671156
N	cassette	NPL	chr1	+	chr1:182787825-182794669;chr1:182787995-182794915;chr1:182787825-182798737;chr1:182787995-182798737;chr1:182787995-182794669;chr1:182787825-182794915	chr1:182787995-182791249,chr1:182787825-182791249;chr1:182791335-182798737,chr1:182791335-182794915,chr1:182791335-182794669		chr1:182791250-182791334			55.67	55.27	62.55	68.18	62.26	56.34	59.26	59.80	63.24	65.47	66.92	62.94	57.56	62.89	58.00	50.63	60.29	57.14	60.77	56.98	60.90	54.40	60.17	59.70	65.91	59.09	63.21	56.32	65.45	53.12	57.69	61.11	58.38	57.20	61.40	50.64	58.82	58.39	-0.43	0.653426	0.872713
N	cassette	POLR2G	chr11	+	chr11:62529133-62530338	chr11:62529133-62529266;chr11:62529657-62530338		chr11:62529267-62529656			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	jcn_only_AA	CANX	chr5	+	chr5:179153761-179156360	chr5:179153761-179155591		chr5:179155592-179156360	chr5:179156360-179156361		96.61	100.00	100.00	100.00	100.00	100.00	98.67	100.00	100.00	95.22	95.48	94.55	98.17	99.04	98.65	98.31	94.87	95.17	100.00	96.21	97.12	98.29	100.00	98.30	100.00	100.00	100.00	98.25	98.20	100.00	95.77	95.93	98.35	100.00	98.71	98.59	99.34	97.83	-1.51	0.194660	0.663989
K	cassette	DEF8	chr16	+	chr16:90015922-90021576;chr16:90015223-90021576	chr16:90015922-90020650,chr16:90015223-90020650;chr16:90020785-90021576		chr16:90020651-90020784			90.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.44	100.00	97.06	91.67	100.00	100.00	92.16	100.00	88.89	100.00	100.00	100.00	100.00	100.00	90.48	100.00	94.59	100.00	97.78	100.00	98.53	95.84	-2.69	0.644887	0.869719
N	alternative_acceptor	IRF8	chr16	+	chr16:85942780-85943092;chr16:85942780-85945175	chr16:85942780-85943089		chr16:85943090-85943092;chr16:85943093-85945175	chr16:85943092-85943093;chr16:85945175-85945176		5.17	10.53	10.53	NA	NA	50.00	0.94	0.00	0.00	2.40	1.80	1.11	1.33	0.00	0.70	1.74	1.92	1.07	NA	6.38	NA	7.02	6.35	7.81	NA	2.17	3.70	5.26	4.55	4.11	4.88	15.52	40.00	6.35	13.16	7.72	5.93	3.52	-2.40	0.353635	0.709013
N	coord_cassette	ATP6V1D	chr14	-	chr14:67805480-67815753	chr14:67805480-67807156;chr14:67807236-67810088;chr14:67810156-67815753		chr14:67807157-67807235;chr14:67810089-67810155			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention		chr20	-	chr20:34218413-34218662				chr20:34218412-34218413;chr20:34218662-34218663		2.33	0.80	5.21	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	4.17	7.27	2.86	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	3.57	3.57	0.00	6.12	1.89	1.82	2.78	2.27	4.44	3.70	4.60	0.40	2.45	2.05	0.522009	1.000000
K	jcn_only_AD	MYO9B	chr19	+	chr19:17322584-17322703	chr19:17322596-17322703		chr19:17322584-17322595	chr19:17322583-17322584		17.86	16.00	26.09	34.62	22.73	21.74	41.18	33.33	50.00	45.45	50.00	NA	35.71	NA	47.06	60.00	50.00	NA	25.00	25.00	35.00	35.48	40.23	38.46	26.19	32.56	25.00	37.50	29.23	40.00	33.33	36.00	22.22	35.29	33.33	44.12	25.59	32.56	6.97	0.888513	0.943380
K	coord_cassette	CD4	chr12	+	chr12:6898829-6923307	chr12:6898829-6908490;chr12:6908531-6909237;chr12:6909354-6909472;chr12:6909638-6923307		chr12:6908491-6908530;chr12:6909238-6909353;chr12:6909473-6909637			95.12	92.31	77.19	NA	100.00	NA	92.07	96.05	95.00	95.65	94.99	99.22	89.81	97.37	89.13	96.69	90.98	97.86	NA	94.44	NA	96.25	94.38	98.17	77.42	100.00	75.00	100.00	91.11	100.00	100.00	85.37	69.23	96.30	90.53	95.14	89.81	96.71	6.90	0.047032	0.643829
N	alternative_donor	GGA1	chr22	+	chr22:38013056-38014454;chr22:38013005-38014454	chr22:38013375-38014454		chr22:38013005-38013055;chr22:38013056-38013374	chr22:38013004-38013005;chr22:38013055-38013056		6.06	15.38	9.52	NA	8.33	NA	2.27	9.09	4.35	5.00	6.67	0.00	6.78	12.50	16.67	2.86	10.00	NA	NA	5.56	8.33	9.09	10.00	10.53	22.22	12.90	10.87	10.00	11.76	NA	11.11	8.51	NA	11.32	15.15	15.38	11.08	10.10	-0.98	0.673250	0.857020
K	intron_retention		chr9	+	chr9:140001900-140001982				chr9:140001899-140001900;chr9:140001982-140001983		2.38	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	5.00	0.00	2.56	0.00	0.00	4.08	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.722131	1.000000
N	jcn_only_AA	ABHD12	chr20	-	chr20:25281425-25282854;chr20:25270866-25282854;chr20:25282270-25282854;chr20:25282015-25282854	chr20:25275667-25282854		chr20:25270866-25275666;chr20:25275667-25281424;chr20:25281425-25282014;chr20:25282015-25282269	chr20:25270865-25270866;chr20:25275666-25275667;chr20:25281424-25281425;chr20:25282014-25282015		100.00	100.00	NA	100.00	99.35	100.00	93.33	81.82	NA	90.00	89.36	100.00	100.00	100.00	NA	97.30	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.52	100.00	85.71	NA	100.00	96.30	100.00	100.00	100.00	100.00	0.00	0.258171	0.663989
N	alternative_donor	STAB1	chr3	+	chr3:52529508-52535181;chr3:52530662-52535181	chr3:52532269-52535181		chr3:52529508-52530661;chr3:52530662-52532268	chr3:52529507-52529508;chr3:52530661-52530662		2.44	2.57	1.54	NA	10.00	0.00	0.00	0.00	0.00	0.00	0.19	0.00	0.18	0.00	0.00	0.00	0.17	0.00	5.45	0.00	NA	0.00	1.41	0.00	1.81	0.00	1.79	0.00	2.27	0.00	NA	0.00	4.55	0.00	1.27	0.00	2.19	0.00	-2.19	0.100363	0.504121
K	alternative_donor	C8orf76	chr8	-	chr8:124238873-124243961	chr8:124238873-124243539		chr8:124243540-124243961	chr8:124243961-124243962		100.00	100.00	100.00	97.22	96.08	94.29	97.22	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.11	100.00	100.00	98.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	91.43	100.00	100.00	100.00	100.00	100.00	0.00	0.313475	0.650093
N	alternative_acceptor	IFI44	chr1	+	chr1:79121197-79124555;chr1:79121197-79124996	chr1:79121197-79123641		chr1:79123642-79124555;chr1:79124556-79124996	chr1:79124555-79124556;chr1:79124996-79124997		12.44	2.50	14.63	0.00	0.00	2.25	3.33	5.69	3.45	2.94	5.00	2.46	4.88	3.99	7.65	4.80	2.70	3.57	NA	10.22	0.00	9.52	0.00	11.09	NA	12.50	7.41	6.57	0.00	2.98	6.52	7.43	0.00	20.75	10.53	10.98	2.92	8.37	5.46	0.011777	0.475629
N	jcn_only_AA	ITGB1BP1	chr2	-	chr2:9547728-9548241;chr2:9547714-9548241	chr2:9547035-9548241		chr2:9547035-9547713;chr2:9547714-9547727	chr2:9547034-9547035;chr2:9547713-9547714		10.26	18.75	16.67	17.19	10.13	33.96	27.62	14.29	15.38	19.51	21.28	26.51	11.54	3.45	3.23	17.11	10.84	14.29	14.55	12.50	28.42	14.29	16.44	18.42	31.03	17.39	4.76	11.90	13.56	15.22	11.76	6.90	25.30	13.70	9.21	20.90	22.02	12.13	-9.89	0.027440	0.636825
K	jcn_only_AA	CCS,DNAJC4	chr11	+	chr11:66360772-66361112	chr11:66360772-66361080		chr11:66361081-66361112	chr11:66361112-66361113		0.00	0.00	3.45	NA	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_donor	ARHGEF10L	chr1	+	chr1:17965185-17966696;chr1:17965828-17966696;chr1:17965809-17966696	chr1:17966477-17966696		chr1:17965185-17965808;chr1:17965809-17965827;chr1:17965828-17966476	chr1:17965184-17965185;chr1:17965808-17965809;chr1:17965827-17965828		7.05	7.69	5.45	5.26	3.45	0.00	0.00	1.99	2.25	0.67	0.99	1.27	1.52	1.96	1.67	2.08	0.77	1.67	0.00	5.13	4.55	3.92	2.30	5.05	NA	9.39	5.81	7.37	3.12	5.79	2.86	4.08	0.00	5.00	3.53	6.29	0.00	4.00	4.00	0.173268	0.563271
N	alternative_donor	UFC1	chr1	+	chr1:161123737-161126739;chr1:161123861-161126739	chr1:161123911-161126739		chr1:161123737-161123860;chr1:161123861-161123910	chr1:161123736-161123737;chr1:161123860-161123861		100.00	100.00	98.00	100.00	100.00	NA	98.53	100.00	100.00	100.00	97.30	100.00	100.00	100.00	98.21	96.08	98.31	100.00	100.00	96.88	97.73	94.44	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.278162	0.648887
K	jcn_only_AA	EMC4,MPI	chr15	+	chr15:34517402-34517764	chr15:34517402-34517736		chr15:34517737-34517764	chr15:34517764-34517765		95.52	100.00	100.00	100.00	97.67	NA	95.05	100.00	94.74	95.74	95.65	100.00	95.51	93.33	100.00	100.00	95.35	100.00	100.00	100.00	100.00	89.47	93.67	89.13	100.00	92.16	93.41	88.57	100.00	92.11	94.23	91.75	100.00	100.00	100.00	87.67	100.00	94.88	-5.12	0.167536	0.663989
K	intron_retention	RP11-361L15.4	chr16	+	chr16:66977275-66977741				chr16:66977274-66977275;chr16:66977741-66977742		3.57	0.00	11.11	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	3.23	7.69	4.55	0.00	0.00	0.00	0.00	4.17	11.11	0.00	13.89	0.00	NA	5.88	9.68	NA	8.33	9.09	9.09	8.11	3.12	9.52	7.69	3.33	0.00	5.03	5.03	0.719253	1.000000
N	alternative_donor	DPP7	chr9	-	chr9:140006207-140006392;chr9:140006207-140006327	chr9:140006207-140006324		chr9:140006325-140006327;chr9:140006328-140006392	chr9:140006327-140006328;chr9:140006392-140006393		93.10	95.51	92.98	95.38	92.62	93.87	95.73	90.00	90.48	85.83	89.73	91.40	97.22	93.33	100.00	96.30	91.80	100.00	96.10	97.56	93.93	94.19	91.33	96.49	99.45	98.00	100.00	94.87	96.43	96.30	95.12	96.72	94.67	94.12	95.49	94.78	95.91	94.22	-1.69	0.210031	0.581601
K	intron_retention	MARS	chr12	+	chr12:57910121-57910217				chr12:57910120-57910121;chr12:57910217-57910218		6.19	6.34	10.16	10.00	10.53	8.46	0.00	1.45	1.23	0.00	3.64	0.00	0.00	0.00	1.97	4.35	3.23	0.00	4.74	9.23	7.29	13.04	9.35	10.00	1.55	4.82	6.52	4.48	4.35	5.95	13.41	14.39	7.03	12.00	6.85	9.23	3.15	5.51	2.36	0.549575	1.000000
N	alternative_donor	KMO	chr1	+	chr1:241751182-241752049;chr1:241751757-241752049;chr1:241751302-241752049;chr1:241750039-241752049	chr1:241750043-241752049		chr1:241750039-241750042;chr1:241750043-241751181;chr1:241751182-241751301;chr1:241751302-241751756	chr1:241750038-241750039;chr1:241750042-241750043;chr1:241751181-241751182;chr1:241751301-241751302		0.00	7.14	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.00	3.08	0.00	0.00	0.00	0.37	NA	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.67	0.54	0.32	0.00	0.00	0.00	0.572794	0.799136
K	intron_retention		chr22	-	chr22:50965168-50965593				chr22:50965167-50965168;chr22:50965593-50965594		15.26	17.23	24.64	24.50	26.71	17.45	0.92	1.75	2.60	4.88	1.90	1.97	1.19	2.37	4.26	2.43	2.62	1.62	15.19	15.71	12.32	31.96	25.05	24.16	20.97	10.32	16.76	12.25	16.43	12.48	20.93	26.01	21.36	24.73	23.89	22.06	16.21	12.79	-3.42	0.733335	1.000000
K	intron_retention	MTCH1	chr6	-	chr6:36938471-36940478				chr6:36938470-36938471;chr6:36940478-36940479		17.04	15.69	22.36	12.90	21.31	11.76	17.76	14.78	18.00	17.39	12.24	11.54	15.29	13.46	16.50	10.85	12.50	10.00	12.12	14.53	13.56	11.11	21.30	17.07	13.33	16.04	20.12	16.81	24.30	12.31	18.92	18.60	16.28	19.51	21.09	15.32	15.49	15.41	-0.08	0.985673	1.000000
K	intron_retention	TTC1	chr5	+	chr5:159492030-159492283				chr5:159492029-159492030;chr5:159492283-159492284		97.78	95.83	100.00	100.00	96.84	97.87	100.00	92.31	96.55	94.44	97.62	86.67	95.56	100.00	100.00	97.14	100.00	100.00	98.84	100.00	100.00	100.00	97.01	100.00	100.00	100.00	97.73	96.30	95.71	97.14	100.00	100.00	98.68	97.30	96.77	94.74	98.76	100.00	1.24	0.960078	1.000000
N	cassette	MIA-RAB4B,RAB4B,RAB4B-EGLN2	chr19	+	chr19:41289746-41292569;chr19:41284297-41292569	chr19:41284297-41289825,chr19:41289746-41289825;chr19:41289981-41292569		chr19:41289826-41289980			98.26	96.69	97.75	96.30	96.67	100.00	98.39	99.15	98.78	100.00	96.61	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.78	97.37	100.00	97.44	97.85	95.24	100.00	97.62	97.35	97.96	100.00	97.22	97.09	97.83	94.59	98.08	98.57	97.59	98.59	97.94	-0.65	0.863364	0.951806
N	alternative_acceptor	NAPA	chr19	-	chr19:47991647-47992967	chr19:47992770-47992967		chr19:47991647-47992769	chr19:47991646-47991647		4.85	3.54	5.61	2.02	1.33	1.79	0.00	0.38	0.27	0.40	0.42	0.28	0.56	0.37	1.17	0.67	0.38	0.32	3.12	4.42	2.67	4.17	3.93	5.00	4.08	2.82	3.94	4.48	1.33	3.56	4.71	4.85	7.00	6.15	3.57	3.88	3.33	3.62	0.29	0.928040	0.978996
K	jcn_only_AD	POLE4	chr2	+	chr2:75186020-75186467	chr2:75186219-75186467		chr2:75186020-75186218	chr2:75186019-75186020		0.00	0.71	10.00	0.00	3.64	1.49	8.06	6.25	2.78	5.13	5.97	5.56	4.44	10.34	0.00	1.25	0.00	0.00	7.69	15.38	15.00	10.00	8.89	0.00	23.88	0.00	16.13	5.71	9.09	10.42	8.00	9.09	3.30	2.17	1.56	1.64	6.07	7.12	1.06	0.752848	0.872874
K	jcn_only_AA	RIC8A	chr11	+	chr11:213419-214205;chr11:213419-214229	chr11:213419-214287		chr11:214206-214229;chr11:214230-214287	chr11:214229-214230;chr11:214287-214288		0.00	2.86	3.41	6.90	0.00	0.00	3.95	5.45	5.77	9.76	1.54	0.00	4.11	6.00	0.00	6.45	0.00	0.00	0.00	6.17	6.35	8.93	4.76	0.00	0.00	3.95	9.09	6.00	2.25	6.25	5.00	8.99	6.00	5.00	4.05	4.76	3.41	5.22	1.82	0.265112	0.663989
K	alternative_donor	ATP6AP1	chrX	+	chrX:153657521-153660175;chrX:153657750-153660175	chrX:153660004-153660175		chrX:153657521-153657749;chrX:153657750-153660003	chrX:153657520-153657521;chrX:153657749-153657750		1.58	3.45	2.59	7.14	1.45	NA	0.70	0.82	0.64	1.10	0.84	0.33	1.02	0.81	1.67	1.48	0.95	0.41	5.56	1.97	1.33	4.20	2.37	2.03	6.06	1.92	1.71	2.33	2.60	2.38	2.22	2.11	3.70	3.74	3.62	2.42	3.58	1.75	-1.83	0.097732	0.495947
K	jcn_only_AA	MAEA	chr4	+	chr4:1283771-1305766	chr4:1283771-1291743					0.00	0.00	0.00	NA	0.00	NA	0.00	3.03	0.00	3.77	1.90	10.00	1.85	8.57	0.00	0.00	0.00	6.25	NA	2.27	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	20.00	0.00	0.00	NA	2.63	0.00	0.00	0.00	1.14	1.14	0.245572	0.663989
N	alternative_acceptor	MMP9	chr20	+	chr20:2844934-2845036	chr20:2844934-2845010		chr20:2845011-2845036	chr20:2845036-2845037		100.00	100.00	91.67	NA	100.00	NA	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	NA	NA	NA	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	80.00	85.71	81.82	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
N	alternative_acceptor	EPHX1,PTGFRN	chr1	+	chr1:226032325-226032846	chr1:226032325-226032791		chr1:226032792-226032846	chr1:226032846-226032847		3.12	0.38	5.26	0.00	0.73	0.00	1.95	9.68	5.56	0.00	3.09	0.00	3.95	15.79	3.77	1.52	4.55	0.00	0.30	3.45	0.80	0.00	0.43	0.74	0.96	6.00	1.85	0.00	0.00	0.47	1.43	4.62	0.61	0.00	0.41	0.78	0.78	4.72	3.94	0.062471	0.580713
K	jcn_only_AD	NDUFS3	chr11	+	chr11:47602156-47602386	chr11:47602175-47602386		chr11:47602156-47602174	chr11:47602155-47602156		95.83	92.86	87.76	95.00	92.86	93.75	94.23	96.55	93.33	94.44	96.05	94.74	94.79	100.00	97.73	93.10	95.59	90.00	97.06	100.00	96.51	90.00	96.05	86.67	98.57	100.00	93.18	95.24	95.38	91.67	91.18	92.98	93.33	96.77	96.30	90.91	94.51	98.28	3.77	0.246352	0.657607
K	alternative_donor	PPP1R7	chr2	+	chr2:242097947-242098627	chr2:242097965-242098627		chr2:242097947-242097964	chr2:242097946-242097947		100.00	87.50	83.72	NA	96.30	NA	95.35	94.12	92.00	82.35	93.10	82.35	91.67	94.12	94.74	88.89	82.61	NA	100.00	91.67	87.88	75.00	92.11	88.24	NA	90.00	92.86	90.91	93.75	92.31	93.33	86.11	80.95	90.91	96.77	90.91	91.67	93.72	2.05	0.466484	0.723654
K	jcn_only_AD	ATG101	chr12	+	chr12:52463856-52464137;chr12:52463727-52464137	chr12:52464027-52464137		chr12:52463727-52463855;chr12:52463856-52464026	chr12:52463726-52463727;chr12:52463855-52463856		100.00	66.67	81.82	100.00	87.50	100.00	95.24	84.62	93.10	92.31	86.96	100.00	90.00	81.82	95.24	91.49	91.67	95.24	78.57	NA	100.00	84.00	87.10	90.00	66.67	91.67	92.86	92.31	87.50	100.00	NA	100.00	88.89	100.00	78.95	93.33	83.73	88.15	4.42	0.224567	0.657607
K	alternative_acceptor	PTMS,ZNF84	chr12	+	chr12:6878841-6879086	chr12:6878841-6879009		chr12:6879010-6879086	chr12:6879086-6879087		4.72	2.06	4.00	2.27	1.72	1.79	2.96	2.99	5.00	3.12	2.00	2.21	2.43	2.63	2.97	3.18	1.97	1.53	3.28	1.94	1.14	3.26	4.04	1.90	2.10	3.05	0.00	4.58	2.33	2.88	2.33	2.63	1.11	3.12	1.50	1.83	2.27	2.81	0.54	0.246881	0.703580
K	jcn_only_AA	FAM65A,FUS	chr16	+	chr16:67573655-67573752	chr16:67573655-67573748		chr16:67573749-67573752	chr16:67573752-67573753		100.00	100.00	97.62	NA	NA	NA	97.78	92.11	97.67	96.97	95.31	NA	98.21	100.00	96.36	96.88	96.77	100.00	NA	95.00	NA	NA	93.94	100.00	100.00	88.89	94.74	NA	91.67	NA	NA	100.00	NA	93.55	93.75	91.89	99.10	95.00	-4.10	0.159608	0.663989
K	alternative_donor	RPS4Y1	chrY	+	chrY:2709669-2710205	chrY:2710015-2710205		chrY:2709669-2710014	chrY:2709668-2709669		5.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	1.39	0.00	0.84	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	5.71	0.00	1.05	0.00	4.55	2.27	0.00	1.85	0.00	0.00	0.00	4.65	4.65	0.044461	0.377550
N	alternative_acceptor	ARMC9,DNAJC10	chr2	+	chr2:232156157-232160910;chr2:232156157-232158502	chr2:232156157-232158497		chr2:232158498-232158502;chr2:232158503-232160910	chr2:232158502-232158503;chr2:232160910-232160911		8.33	2.70	6.67	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.85	NA	0.00	0.00	4.76	6.25	1.32	NA	0.00	0.00	1.92	0.00	6.25	4.55	3.33	7.14	4.55	13.33	1.58	3.12	1.54	0.403660	0.719111
N	jcn_only_AA	RASSF4	chr10	+	chr10:45485170-45486395	chr10:45485170-45485464		chr10:45485465-45486395	chr10:45486395-45486396		1.86	0.00	2.32	0.00	0.00	0.00	0.79	1.35	1.15	2.11	0.00	0.00	1.43	1.99	2.31	0.90	0.00	4.41	0.00	2.54	0.00	0.00	0.00	0.00	0.00	5.59	1.60	3.96	2.13	4.52	3.23	1.00	0.00	0.00	0.00	0.00	0.00	2.27	2.27	0.010304	0.482846
N	intron_retention		chr19	-	chr19:17514136-17514507				chr19:17514135-17514136;chr19:17514507-17514508		98.63	100.00	100.00	100.00	100.00	100.00	50.00	60.54	62.65	55.00	58.33	57.69	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.36	100.00	100.00	100.00	100.00	100.00	0.00	0.967767	1.000000
K	intron_retention	GIMAP5	chr7	+	chr7:150434797-150437966				chr7:150434796-150434797;chr7:150437966-150437967		4.76	0.00	12.50	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.25	0.00	0.00	7.14	13.04	0.00	4.38	6.00	0.00	0.00	0.00	4.35	9.43	0.00	18.18	8.33	0.00	0.00	4.37	4.37	0.138167	1.000000
N	intron_retention		chr12	-	chr12:7525983-7526113				chr12:7525982-7525983;chr12:7526113-7526114		96.36	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	98.37	87.50	NA	100.00	100.00	100.00	98.50	93.16	95.12	95.83	100.00	100.00	100.00	92.16	100.00	100.00	100.00	97.14	95.45	96.30	96.67	100.00	98.15	96.27	99.25	93.16	-6.09	0.028715	1.000000
N	cassette	ADAP1,COX19	chr7	-	chr7:966281-994031	chr7:966281-975010;chr7:975142-994031		chr7:975011-975141			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	NA	100.00	98.41	100.00	97.83	98.48	100.00	94.94	97.98	91.89	NA	100.00	NA	88.00	92.50	100.00	100.00	100.00	NA	97.50	100.00	100.00	NA	NA	NA	100.00	100.00	92.00	100.00	100.00	0.00	0.717654	0.899501
K	alternative_acceptor	TRMT112	chr11	-	chr11:64084605-64084735	chr11:64084620-64084735		chr11:64084605-64084619	chr11:64084604-64084605		96.72	97.44	98.18	94.55	97.93	96.61	98.21	96.15	97.50	98.61	97.37	97.47	99.12	94.34	97.73	97.20	97.25	96.97	97.27	94.57	96.69	95.00	96.90	100.00	97.67	98.57	98.08	96.72	98.33	100.00	97.03	96.90	97.26	97.62	99.06	99.01	97.56	96.44	-1.12	0.060428	0.574109
N	jcn_only_AA	ANAPC4	chr4	+	chr4:25416323-25417087	chr4:25416323-25417021		chr4:25417022-25417087	chr4:25417087-25417088		8.33	0.00	8.57	NA	0.00	NA	0.00	NA	NA	NA	5.56	NA	12.50	0.00	0.00	0.00	0.00	NA	8.33	13.64	10.00	11.76	9.68	0.00	0.00	18.18	7.89	NA	8.70	0.00	0.00	12.20	0.00	9.09	7.50	9.38	0.00	8.33	8.33	0.322449	0.663989
K	intron_retention	ARRDC2	chr19	+	chr19:18119928-18120400				chr19:18119927-18119928;chr19:18120400-18120401		0.00	1.59	4.08	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	7.14	6.25	0.00	0.00	2.50	NA	0.00	0.00	0.00	NA	0.00	NA	5.00	4.00	8.70	0.00	2.70	9.09	0.80	2.50	1.71	0.874620	1.000000
K	intron_retention	ALKBH7	chr19	+	chr19:6374601-6374821				chr19:6374600-6374601;chr19:6374821-6374822		0.00	1.97	2.27	0.00	3.06	0.97	6.06	0.00	5.88	0.00	3.33	9.09	0.00	0.00	0.00	0.00	0.00	NA	1.18	0.00	0.98	0.00	2.13	NA	0.00	NA	0.00	0.00	2.08	3.57	11.76	12.20	7.79	9.52	8.82	8.33	1.57	0.00	-1.57	0.995682	1.000000
N	alternative_acceptor		chr17	+	chr17:78225201-78226428;chr17:78225201-78226132	chr17:78225201-78226423		chr17:78226133-78226423;chr17:78226424-78226428	chr17:78226423-78226424;chr17:78226428-78226429		93.94	91.89	95.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	94.12	90.91	100.00	95.65	100.00	92.86	95.65	100.00	100.00	97.67	100.00	90.32	93.75	100.00	94.23	91.43	98.08	100.00	94.03	-5.97	0.079987	0.585944
N	jcn_only_AA	P4HB	chr17	-	chr17:79813565-79817056;chr17:79813463-79817056	chr17:79813382-79817056		chr17:79813382-79813462;chr17:79813463-79813564	chr17:79813381-79813382;chr17:79813462-79813463		4.21	7.58	6.30	1.52	5.34	11.11	4.47	4.21	4.59	6.76	5.65	7.31	4.82	4.82	4.86	3.06	6.66	7.15	4.84	3.70	5.24	2.70	2.29	3.36	4.76	5.15	4.51	2.63	4.33	2.13	2.76	3.70	4.08	4.50	3.70	2.86	4.79	4.21	-0.58	0.159146	0.663989
N	jcn_only_AA	MINK1,RAD51C	chr17	+	chr17:4800109-4800498	chr17:4800109-4800274		chr17:4800275-4800498	chr17:4800498-4800499		7.50	0.00	0.00	NA	0.00	NA	0.00	5.56	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.180525	0.663989
K	intron_retention	FDXR	chr17	-	chr17:72859070-72859197				chr17:72859069-72859070;chr17:72859197-72859198		5.00	3.68	4.08	NA	0.00	0.00	0.00	NA	0.00	NA	NA	NA	0.00	NA	0.00	NA	NA	NA	2.67	7.14	2.29	NA	0.00	NA	2.22	0.00	2.22	NA	0.00	NA	7.14	4.65	4.70	0.00	0.00	NA	2.45	6.07	3.62	0.967682	1.000000
K	alternative_acceptor	CAPN1	chr11	+	chr11:64949485-64950372	chr11:64949485-64950171		chr11:64950172-64950372	chr11:64950372-64950373		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	97.67	100.00	95.56	97.54	100.00	100.00	94.00	100.00	100.00	NA	97.83	NA	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.736827	0.902878
K	intron_retention	UNC13D	chr17	-	chr17:73823740-73824078				chr17:73823739-73823740;chr17:73824078-73824079		93.68	94.02	97.01	90.00	98.00	100.00	100.00	100.00	100.00	NA	100.00	NA	95.65	100.00	100.00	NA	NA	NA	83.61	90.67	85.85	86.67	90.91	100.00	91.75	94.44	95.45	NA	84.38	80.00	92.73	88.14	84.62	90.91	100.00	100.00	92.88	94.06	1.18	0.476846	1.000000
K	intron_retention	CDK11A	chr1	-	chr1:1635586-1635661				chr1:1635585-1635586;chr1:1635661-1635662		11.11	9.09	21.21	NA	4.17	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	6.67	0.00	NA	NA	7.14	13.89	9.52	35.71	9.09	13.33	3.33	7.69	8.82	7.14	0.00	5.56	28.57	16.67	12.12	8.00	10.71	11.43	5.23	9.40	4.17	0.604497	1.000000
N	cassette	PRR14	chr16	+	chr16:30665661-30666671	chr16:30665661-30665949;chr16:30666536-30666671		chr16:30665950-30666535			76.92	85.71	61.11	77.78	77.78	64.29	93.75	100.00	94.59	100.00	91.67	100.00	94.44	94.44	100.00	100.00	100.00	100.00	50.00	75.61	60.42	68.42	64.58	70.00	60.00	90.91	69.84	91.67	84.21	84.00	55.56	51.58	34.29	66.67	61.70	79.17	72.85	83.91	11.06	0.334259	0.709176
N	alternative_donor	PGS1	chr17	+	chr17:76419377-76420141;chr17:76416405-76420141;chr17:76415757-76420141	chr17:76415807-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		12.28	0.00	7.38	21.74	9.09	9.52	0.00	18.75	13.64	17.86	20.00	14.29	16.67	24.39	27.66	17.39	27.27	14.29	6.67	11.11	11.32	15.38	12.50	8.62	NA	14.29	11.11	7.14	16.67	9.09	6.90	10.61	9.52	13.79	14.29	8.16	6.67	13.29	6.62	0.079969	0.470724
N	alternative_acceptor	ADAMTSL4	chr1	+	chr1:112251887-112273050;chr1:112251887-112255059	chr1:112251887-112255052		chr1:112255053-112255059;chr1:112255060-112273050	chr1:112255059-112255060;chr1:112273050-112273051		94.44	100.00	100.00	NA	96.00	NA	100.00	90.91	NA	NA	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	88.24	100.00	NA	100.00	NA	100.00	100.00	94.44	NA	100.00	NA	NA	100.00	100.00	100.00	96.30	100.00	100.00	94.44	-5.56	0.089745	0.592597
K	coord_cassette	PAK1	chr11	-	chr11:77060333-77069942	chr11:77060333-77064580;chr11:77064645-77066712;chr11:77066888-77069942		chr11:77064581-77064644;chr11:77066713-77066887			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	98.99	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	95.24	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
K	jcn_only_AD	TMEM150B	chr19	-	chr19:55824424-55828153	chr19:55824424-55828142		chr19:55828143-55828153	chr19:55828153-55828154		2.41	14.63	6.17	0.00	0.00	5.26	1.75	3.31	3.11	11.76	0.00	3.23	1.82	3.98	3.45	3.45	7.14	2.78	4.76	2.90	4.48	NA	5.88	6.25	0.00	3.80	3.70	10.00	0.00	3.23	1.89	4.60	11.76	0.00	8.70	4.55	3.29	3.10	-0.19	0.317209	0.657607
K	alternative_acceptor	CSE1L,MTG2	chr20	+	chr20:47711501-47712885	chr20:47711501-47712712		chr20:47712713-47712885	chr20:47712885-47712886		4.55	5.11	7.89	6.12	6.25	1.45	4.08	0.00	3.12	5.00	1.89	0.00	2.94	10.00	4.26	4.84	4.76	0.00	4.17	14.29	6.45	4.17	9.68	12.50	2.63	7.69	8.82	8.33	5.80	6.06	12.50	8.11	4.31	6.06	5.00	6.67	4.12	8.85	4.72	0.103631	0.598353
K	intron_retention	DDX56	chr7	-	chr7:44608803-44609407				chr7:44608802-44608803;chr7:44609407-44609408		0.00	0.00	8.89	5.88	3.85	0.00	0.00	NA	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.70	8.16	3.92	5.13	3.45	0.00	2.56	0.00	2.08	2.27	2.78	7.27	4.05	2.27	3.45	1.67	0.00	0.00	0.00	0.806396	1.000000
K	alternative_donor	PQBP1	chrX	+	chrX:48755377-48755774;chrX:48755298-48755774	chrX:48755366-48755774		chrX:48755298-48755365;chrX:48755366-48755376	chrX:48755297-48755298;chrX:48755365-48755366		57.14	45.45	76.19	74.07	65.45	57.14	78.38	72.73	81.82	76.92	64.00	69.23	68.42	76.67	84.44	67.16	76.19	69.23	55.88	77.78	71.11	73.33	67.19	64.52	48.00	66.67	75.00	73.33	68.33	75.61	65.71	73.33	58.82	61.11	58.70	66.67	57.35	69.70	12.35	0.123443	0.538772
K	alternative_donor	NDUFB10	chr16	+	chr16:2011613-2011797	chr16:2011638-2011797		chr16:2011613-2011637	chr16:2011612-2011613		90.91	89.13	90.91	94.34	90.44	94.38	96.83	100.00	96.77	94.29	96.61	93.10	92.75	100.00	96.43	97.83	96.67	96.15	93.55	100.00	92.91	100.00	94.74	90.00	91.45	100.00	100.00	100.00	94.29	95.92	92.59	93.62	95.45	93.94	93.10	95.74	93.15	100.00	6.85	0.085235	0.475124
K	coord_cassette	STK40	chr1	-	chr1:36826942-36851323	chr1:36826942-36833452;chr1:36833686-36838249;chr1:36838376-36851323		chr1:36833453-36833685;chr1:36838250-36838375			0.00	0.00	0.00	NA	NA	NA	0.00	3.81	0.00	0.00	1.39	2.15	0.00	2.02	4.35	1.83	1.47	0.00	NA	0.00	NA	0.00	3.12	4.44	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	NA	0.00	4.29	3.08	0.00	0.00	0.00	0.198956	0.643829
K	intron_retention	CTB-50L17.10	chr19	+	chr19:4501330-4501925				chr19:4501329-4501330;chr19:4501925-4501926		33.33	25.93	41.67	18.18	29.73	12.00	20.00	NA	NA	NA	20.00	NA	23.08	NA	18.18	NA	NA	NA	22.62	21.05	24.00	NA	31.82	NA	25.23	25.00	38.46	NA	27.27	NA	28.57	30.95	22.22	18.18	25.00	30.00	22.85	26.79	3.93	0.814332	1.000000
N	jcn_only_AA	TYROBP	chr19	-	chr19:36398260-36398347;chr19:36398164-36398347;chr19:36398150-36398347	chr19:36398167-36398347		chr19:36398150-36398163;chr19:36398164-36398166;chr19:36398167-36398259	chr19:36398149-36398150;chr19:36398163-36398164;chr19:36398166-36398167		81.07	79.86	81.04	79.39	79.78	80.05	85.26	84.67	85.50	83.47	83.70	83.29	84.09	84.50	84.11	84.04	82.26	81.30	79.67	79.42	81.09	81.19	80.93	80.37	81.06	83.18	82.61	83.04	82.99	83.20	79.01	77.99	79.37	78.30	80.01	78.89	80.46	82.12	1.66	0.775863	0.900793
N	cassette	UFC1	chr1	+	chr1:161126808-161127406	chr1:161126808-161127043;chr1:161127108-161127406		chr1:161127044-161127107			100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.13	99.11	98.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.13	97.96	100.00	100.00	98.15	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.562503	0.824445
K	jcn_only_AD	NAP1L1	chr12	-	chr12:76441499-76442200	chr12:76441499-76442172		chr12:76442173-76442200	chr12:76442200-76442201		62.07	69.05	74.45	72.18	72.17	69.53	67.19	68.18	67.65	72.37	66.67	79.41	65.08	69.44	64.37	73.45	81.16	72.22	66.75	66.67	65.36	66.43	69.36	74.71	64.29	71.15	71.35	69.94	66.32	69.71	69.70	74.38	66.92	72.35	71.19	71.43	66.84	68.81	1.97	0.399943	0.664304
K	intron_retention	TUBA1A	chr12	-	chr12:49580242-49580393				chr12:49580241-49580242;chr12:49580393-49580394		2.79	3.57	5.65	NA	0.00	NA	0.33	0.22	0.59	0.00	0.00	0.00	0.38	0.38	1.67	0.72	0.28	0.00	0.00	2.37	2.02	8.82	3.48	5.88	0.00	4.49	2.53	4.26	3.45	0.00	8.33	8.84	0.00	3.08	6.72	0.87	0.17	2.58	2.42	0.209698	1.000000
K	cassette	IRAK1	chrX	-	chrX:153278130-153279492	chrX:153278130-153278493;chrX:153278885-153279492		chrX:153278494-153278884			96.61	100.00	95.83	95.24	91.80	NA	100.00	100.00	100.00	100.00	98.70	97.18	100.00	100.00	96.88	98.67	100.00	100.00	100.00	98.04	100.00	98.04	97.62	97.47	100.00	100.00	100.00	100.00	99.00	95.74	93.88	97.62	100.00	93.98	96.97	98.11	100.00	99.02	-0.98	0.118146	0.709176
K	coord_cassette	EXOSC1	chr10	-	chr10:99196309-99198426	chr10:99196309-99196947;chr10:99197033-99197456;chr10:99197508-99198426		chr10:99196948-99197032;chr10:99197457-99197507			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.24	93.75	94.87	NA	100.00	NA	96.00	100.00	100.00	100.00	100.00	100.00	84.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.460529	0.692112
K	alternative_acceptor	COL4A3BP	chr5	-	chr5:74664484-74675161	chr5:74670017-74675161		chr5:74664484-74670016	chr5:74664483-74664484		94.44	84.38	93.18	65.00	79.17	58.33	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	NA	65.62	80.77	77.78	90.91	89.74	94.12	66.67	93.55	84.62	100.00	100.00	93.33	85.71	92.59	79.17	100.00	95.00	90.91	81.78	94.00	12.22	0.202155	0.668672
N	jcn_only_AA	OLFML2B	chr1	-	chr1:161962752-161967614;chr1:161962050-161967614;chr1:161954771-161967614;chr1:161948463-161967614	chr1:161966285-161967614		chr1:161948463-161954770;chr1:161954771-161962049;chr1:161962050-161962751;chr1:161962752-161966284	chr1:161948462-161948463;chr1:161954770-161954771;chr1:161962049-161962050;chr1:161962751-161962752		4.55	5.80	1.17	NA	17.39	NA	3.26	5.20	0.00	0.00	1.39	0.00	0.00	5.73	0.00	0.00	0.00	0.00	33.33	6.75	9.84	0.00	4.49	0.00	NA	5.59	1.81	0.00	4.62	15.38	8.20	0.85	47.06	11.54	5.26	7.14	5.80	5.66	-0.14	0.275214	0.663989
K	jcn_only_AA	PPP6R2	chr22	+	chr22:50877192-50878129	chr22:50877192-50878126		chr22:50878127-50878129	chr22:50878129-50878130		8.93	8.00	4.76	7.69	5.66	6.45	3.33	9.30	0.00	0.00	2.94	6.67	7.69	8.77	8.16	12.00	9.09	0.00	5.56	6.12	5.63	6.06	5.26	7.41	13.33	0.00	4.17	9.38	2.44	14.29	7.14	4.94	7.02	12.50	6.06	5.26	7.36	7.96	0.60	0.701896	0.867936
K	cassette	AP1M1	chr19	+	chr19:16339020-16344303	chr19:16339020-16339580;chr19:16339740-16344303		chr19:16339581-16339739			100.00	100.00	100.00	100.00	100.00	NA	95.89	98.41	100.00	96.08	98.67	100.00	98.85	98.39	100.00	98.51	100.00	100.00	NA	95.65	90.91	96.43	96.30	100.00	NA	100.00	98.15	100.00	97.50	100.00	92.86	92.31	100.00	100.00	93.18	94.74	99.42	98.40	-1.02	0.471119	0.769093
K	jcn_only_AA	RPL19	chr17	+	chr17:37356603-37357474	chr17:37356603-37357465		chr17:37357466-37357474	chr17:37357474-37357475		100.00	100.00	100.00	100.00	89.39	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.59	100.00	93.72	100.00	87.99	94.89	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.66	100.00	94.69	84.46	100.00	100.00	100.00	100.00	0.00	0.593815	0.812401
K	intron_retention	CD4	chr12	+	chr12:6923467-6923924				chr12:6923466-6923467;chr12:6923924-6923925		0.00	5.78	6.25	0.00	0.00	NA	0.84	0.69	0.72	0.26	0.72	0.48	0.75	1.54	1.35	0.00	1.17	0.00	7.14	0.00	0.00	0.00	0.95	0.00	12.50	2.63	4.30	0.00	0.85	0.00	0.00	0.00	7.14	0.30	0.82	0.19	6.46	0.34	-6.12	0.218067	1.000000
N	alternative_acceptor	C17orf62	chr17	-	chr17:80405515-80407045;chr17:80405523-80407045	chr17:80405498-80407045		chr17:80405498-80405514;chr17:80405515-80405522	chr17:80405497-80405498;chr17:80405514-80405515		96.21	93.44	90.20	NA	90.00	NA	100.00	100.00	99.49	100.00	100.00	100.00	98.21	98.73	98.24	100.00	100.00	94.29	100.00	90.41	97.62	NA	92.31	78.57	94.74	96.59	95.52	92.00	88.00	87.50	100.00	93.42	87.50	93.33	91.67	92.42	96.47	97.66	1.19	0.598567	0.846631
K	intron_retention	HCFC1R1	chr16	-	chr16:3073532-3073847				chr16:3073531-3073532;chr16:3073847-3073848		3.45	7.06	12.20	0.00	1.72	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	7.55	0.00	3.70	NA	13.95	NA	3.09	0.00	10.91	5.26	2.94	0.00	25.00	23.08	5.71	0.00	17.24	0.00	4.40	0.00	-4.40	0.982501	1.000000
N	jcn_only_AA	SERBP1	chr1	-	chr1:67890661-67890765;chr1:67890670-67890765	chr1:67890643-67890765		chr1:67890643-67890660;chr1:67890661-67890669	chr1:67890642-67890643;chr1:67890660-67890661		55.77	42.86	53.78	51.02	51.39	56.25	40.67	45.83	46.28	42.74	43.91	48.80	40.55	46.00	39.34	43.13	43.49	40.00	42.50	44.07	41.10	50.00	42.28	49.22	64.29	44.12	41.98	50.46	41.67	46.74	53.33	43.84	52.78	48.18	46.67	53.39	42.68	45.91	3.23	0.841006	0.937818
K	cassette	MIF4GD	chr17	-	chr17:73264274-73266194	chr17:73264274-73265427;chr17:73265530-73266194		chr17:73265428-73265529			4.76	6.82	5.26	NA	15.79	NA	9.09	10.00	8.33	7.69	11.54	0.00	9.76	5.88	8.00	7.69	12.50	NA	9.09	0.00	0.00	NA	8.82	NA	NA	0.00	6.25	NA	10.00	NA	NA	5.88	6.25	10.00	3.70	9.09	9.09	4.76	-4.33	0.099322	0.678740
N	jcn_only_AA	MILR1	chr17	+	chr17:62463763-62469521;chr17:62463763-62464426;chr17:62463763-62492438;chr17:62463763-62488401	chr17:62463763-62471431		chr17:62464427-62469521;chr17:62469522-62471431;chr17:62471432-62488401;chr17:62488402-62492438	chr17:62469521-62469522;chr17:62471431-62471432;chr17:62488401-62488402;chr17:62492438-62492439		NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	13.04	0.00	0.00	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.391002	0.663989
N	jcn_only_AD	NAT6	chr3	-	chr3:38178177-38178821	chr3:38178177-38178355		chr3:38178356-38178821	chr3:38178821-38178822		100.00	100.00	95.38	NA	100.00	NA	100.00	100.00	96.49	88.89	100.00	71.43	100.00	100.00	100.00	82.35	100.00	NA	100.00	93.55	98.11	76.92	96.36	68.18	100.00	96.43	95.92	90.48	100.00	79.17	93.94	100.00	100.00	82.14	100.00	65.33	100.00	98.22	-1.78	0.087590	0.632469
K	alternative_first_exon	EIF5A	chr17	+	chr17:7212435-7212933,chr17:7211453-7212933,chr17:7212824-7212933,chr17:7210433-7212933,chr17:7210670-7212933,chr17:7212312-7212933;chr17:7211433-7212933;chr17:7210435-7212933;chr17:7211895-7212933	chr17:7211072-7212933	chr17:7211293-7211432;chr17:7210318-7210434;chr17:7211690-7211894	chr17:7210692-7211071			79.25	80.33	75.90	84.62	82.00	76.92	81.31	75.56	73.38	75.57	74.50	77.57	77.03	74.19	76.27	82.00	65.69	66.67	80.56	68.57	76.79	70.51	83.64	74.26	NA	70.59	79.31	78.01	82.46	79.20	84.75	78.67	82.35	69.89	80.41	75.00	80.56	74.88	-5.69	0.106171	0.279216
K	jcn_only_AD	TAPBPL	chr12	+	chr12:6561786-6562232;chr12:6561317-6562232;chr12:6560951-6562232	chr12:6561479-6562232		chr12:6560951-6561316;chr12:6561317-6561478;chr12:6561479-6561785	chr12:6560950-6560951;chr12:6561316-6561317;chr12:6561478-6561479		100.00	100.00	100.00	NA	100.00	NA	96.30	100.00	100.00	100.00	100.00	100.00	91.43	95.24	97.83	100.00	96.88	100.00	NA	97.30	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	100.00	95.45	100.00	NA	100.00	100.00	98.00	98.15	97.74	-0.41	0.746525	0.868378
N	cassette	EXOC7	chr17	-	chr17:74079832-74080328	chr17:74079832-74080086;chr17:74080221-74080328		chr17:74080087-74080220			100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	96.55	94.44	100.00	100.00	95.00	100.00	100.00	100.00	97.37	100.00	100.00	96.77	93.33	97.14	100.00	100.00	0.00	0.953971	0.987421
N	cassette	DBNL	chr7	+	chr7:44089880-44097380;chr7:44092541-44097380	chr7:44089880-44096355,chr7:44092541-44096355;chr7:44096503-44097380		chr7:44096356-44096502			100.00	97.56	100.00	93.33	100.00	100.00	100.00	99.45	100.00	100.00	99.40	99.00	100.00	98.90	99.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	0.00	0.777291	0.934378
K	intron_retention	MVB12A	chr19	+	chr19:17534427-17534501				chr19:17534426-17534427;chr19:17534501-17534502		3.03	6.25	6.67	NA	6.90	14.29	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.86	0.00	4.35	NA	0.00	NA	2.78	0.00	0.00	0.00	0.00	15.79	7.69	6.45	6.67	NA	0.00	0.00	2.82	0.00	-2.82	0.914414	1.000000
N	alternative_acceptor	TMEM205	chr19	-	chr19:11455967-11456195	chr19:11456092-11456195		chr19:11455967-11456091	chr19:11455966-11455967		100.00	94.34	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.10	100.00	100.00	100.00	100.00	100.00	0.00	0.201354	0.668038
K	intron_retention	RABGGTA	chr14	-	chr14:24737826-24737930				chr14:24737825-24737826;chr14:24737930-24737931		0.00	23.08	6.67	NA	NA	NA	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.26	0.00	NA	6.67	NA	NA	13.04	13.33	10.00	0.00	0.00	8.33	4.17	0.00	NA	9.09	15.79	0.00	2.63	2.63	0.587194	1.000000
K	alternative_donor	MRPL28	chr16	-	chr16:420226-420498;chr16:420226-420443	chr16:420226-420484		chr16:420444-420484;chr16:420485-420498	chr16:420484-420485;chr16:420498-420499		7.14	0.00	0.00	NA	NA	NA	0.00	0.00	5.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.928045	0.984606
N	cassette	IFNAR2	chr21	+	chr21:34625136-34638316;chr21:34625136-34635097;chr21:34625136-34634865	chr21:34625136-34632901;chr21:34633033-34635097,chr21:34633033-34634865,chr21:34633033-34638316		chr21:34632902-34633032			83.72	100.00	79.17	97.30	98.00	87.88	88.46	85.19	81.60	90.28	88.76	72.73	93.24	83.33	80.22	89.19	84.48	76.60	90.91	88.10	100.00	90.62	95.24	77.46	100.00	78.57	92.06	90.00	91.30	90.48	90.48	75.00	90.32	82.93	89.23	83.53	92.07	84.45	-7.62	0.007614	0.267181
K	cassette	BLVRA	chr7	+	chr7:43798334-43810736	chr7:43798334-43799615;chr7:43799710-43810736		chr7:43799616-43799709			6.72	18.18	14.16	13.33	11.76	11.86	10.11	10.22	14.11	6.48	4.41	6.45	8.82	12.00	12.31	6.56	5.80	9.32	13.79	10.38	10.64	11.54	5.45	12.33	0.00	12.33	7.95	5.26	5.77	7.91	11.69	12.50	8.11	8.82	9.09	6.98	9.46	11.04	1.57	0.792767	0.936947
K	intron_retention	DHPS	chr19	-	chr19:12788211-12790270				chr19:12788210-12788211;chr19:12790270-12790271		5.13	0.00	14.29	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	0.00	4.35	3.33	1.79	0.00	8.33	5.26	0.00	0.00	2.63	4.76	2.56	2.78	3.85	8.57	6.45	4.76	0.00	3.70	0.00	3.02	3.02	0.941163	1.000000
N	jcn_only_AA	SGSM2	chr17	+	chr17:2282498-2282725;chr17:2282498-2283558	chr17:2282498-2282705		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	5.88	NA	10.53	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
N	jcn_only_AD	FGD2	chr6	+	chr6:36993106-36993567;chr6:36990147-36993567	chr6:36992570-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		2.96	0.00	NA	NA	0.00	NA	2.56	3.28	0.00	0.00	0.00	0.00	1.59	3.11	0.00	0.00	0.00	0.00	NA	6.12	NA	NA	0.00	0.00	0.00	2.84	NA	0.00	0.00	0.00	4.00	0.00	0.00	0.00	5.26	0.00	0.00	3.19	3.19	0.003628	0.177805
N	jcn_only_AA	CPSF6	chr12	+	chr12:69653978-69656152	chr12:69653978-69656149		chr12:69656150-69656152	chr12:69656152-69656153		0.00	0.00	0.00	0.00	0.00	0.00	3.23	6.25	8.00	7.27	0.00	8.33	8.82	0.00	0.00	6.06	4.76	0.00	5.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	4.76	6.25	6.06	3.03	NA	3.12	0.00	3.33	0.00	0.00	1.61	0.00	-1.61	0.430715	0.699533
K	cassette	NGLY1	chr3	-	chr3:25761127-25770623	chr3:25761127-25761504;chr3:25761683-25770623		chr3:25761505-25761682			88.24	82.05	100.00	75.00	96.67	78.57	78.95	81.82	62.50	NA	100.00	NA	100.00	84.62	73.33	86.67	91.67	NA	80.00	82.35	80.00	76.19	93.33	76.92	78.57	93.33	81.82	75.00	85.19	66.67	60.00	66.67	68.00	76.67	86.96	78.26	79.47	83.48	4.01	0.942846	0.985246
K	intron_retention	SGSM3	chr22	+	chr22:40803848-40804074				chr22:40803847-40803848;chr22:40804074-40804075		0.00	17.50	9.52	NA	10.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.82	15.38	3.70	NA	12.90	NA	6.25	NA	15.00	0.00	7.14	0.00	9.09	8.33	4.00	0.00	6.25	13.33	5.12	4.54	-0.58	0.998855	1.000000
K	intron_retention	ECI1	chr16	-	chr16:2293226-2293318				chr16:2293225-2293226;chr16:2293318-2293319		4.76	0.00	2.86	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39	9.09	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	4.35	0.00	0.00	0.00	0.00	0.00	2.38	2.38	0.687340	1.000000
K	alternative_donor	CNBP	chr3	-	chr3:128890382-128890497;chr3:128890382-128890494	chr3:128890382-128890476		chr3:128890477-128890494;chr3:128890495-128890497	chr3:128890494-128890495;chr3:128890497-128890498		26.76	17.24	24.02	26.67	21.74	NA	27.60	26.47	28.90	22.22	25.56	21.74	26.98	26.67	28.63	21.74	22.76	15.38	NA	19.78	26.19	21.00	23.87	24.05	NA	27.42	26.71	20.25	24.60	20.83	20.00	18.93	25.00	21.80	18.95	21.74	25.99	26.57	0.58	0.915586	0.981916
K	intron_retention	TAF10	chr11	-	chr11:6632684-6632894				chr11:6632683-6632684;chr11:6632894-6632895		7.78	3.93	6.51	4.58	5.15	4.29	0.40	0.82	1.19	1.30	1.67	0.00	1.04	0.96	1.92	0.74	0.96	0.00	2.53	4.20	3.33	1.09	3.21	8.82	1.38	3.36	4.06	4.76	4.05	2.47	7.50	8.02	2.70	7.20	6.25	6.94	1.95	3.78	1.83	0.464713	1.000000
K	jcn_only_AD	ARHGAP4	chrX	-	chrX:153187263-153193780;chrX:153187263-153191589;chrX:153187263-153192269	chrX:153187263-153192043		chrX:153191590-153192043;chrX:153192044-153192269;chrX:153192270-153193780	chrX:153192043-153192044;chrX:153192269-153192270;chrX:153193780-153193781		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	0.00	1.57	10.53	0.00	0.00	0.00	3.70	0.00	0.00	NA	0.00	4.65	0.00	0.00	0.00	0.00	0.00	0.00	5.26	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.432470	0.695466
K	intron_retention	PIK3R5	chr17	-	chr17:8785030-8785104				chr17:8785029-8785030;chr17:8785104-8785105		8.00	7.69	5.60	0.00	1.49	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.03	0.00	3.19	2.41	1.16	0.00	2.97	1.15	0.00	0.44	0.00	8.80	4.81	6.67	2.16	2.93	1.82	0.00	3.50	3.50	0.833251	1.000000
K	jcn_only_AA	ESD	chr13	-	chr13:47345632-47351590	chr13:47349828-47351590		chr13:47345632-47349827	chr13:47345631-47345632		0.00	0.00	0.00	0.00	0.00	1.30	5.38	2.86	0.00	3.26	1.87	2.97	3.81	2.50	5.13	2.30	1.64	1.10	2.72	1.19	1.92	3.17	1.49	1.45	1.48	2.94	5.38	0.00	4.26	3.23	0.00	2.35	1.16	0.00	1.11	0.95	2.10	1.84	-0.26	0.410137	0.682643
K	alternative_acceptor	CUX1	chr7	+	chr7:101813831-101821754	chr7:101813831-101821748		chr7:101821749-101821754	chr7:101821754-101821755		68.75	28.00	64.71	NA	NA	NA	75.00	62.50	78.95	67.74	72.22	80.56	71.43	58.33	83.33	69.44	69.39	75.00	NA	68.00	NA	47.37	57.14	70.59	100.00	59.38	60.00	78.95	70.83	75.00	59.09	68.97	NA	72.22	69.44	68.49	73.22	60.94	-12.28	0.719433	0.894796
N	alternative_acceptor	PLEKHM2	chr1	+	chr1:16057753-16058393;chr1:16057753-16058383	chr1:16057753-16058444		chr1:16058384-16058393;chr1:16058394-16058444	chr1:16058393-16058394;chr1:16058444-16058445		10.98	14.29	19.67	16.22	17.65	11.11	3.08	6.94	7.41	4.17	5.88	1.92	8.62	5.95	5.66	7.87	6.85	5.56	17.24	24.66	13.64	18.67	17.95	17.44	0.00	9.09	10.94	9.52	12.90	7.81	25.23	27.52	26.53	19.13	17.39	15.97	11.45	10.04	-1.42	0.693240	0.884306
K	cassette	CXXC1	chr18	-	chr18:47811618-47812118	chr18:47811618-47811694;chr18:47811722-47812118		chr18:47811695-47811721			94.59	100.00	94.12	NA	90.00	NA	100.00	95.65	93.10	100.00	100.00	NA	96.55	88.89	93.33	100.00	100.00	NA	100.00	95.83	84.21	90.00	91.11	NA	NA	95.45	93.02	100.00	91.67	NA	93.10	94.00	100.00	85.71	100.00	100.00	100.00	95.02	-4.98	0.002891	0.180953
K	intron_retention	FANCA	chr16	-	chr16:89805698-89805885				chr16:89805697-89805698;chr16:89805885-89805886		51.61	61.11	60.87	100.00	66.67	NA	NA	13.33	0.00	NA	NA	NA	26.67	12.50	NA	NA	63.64	NA	62.50	38.46	61.54	NA	NA	NA	73.68	23.81	52.00	NA	70.00	NA	47.62	50.00	86.67	NA	NA	72.73	62.50	31.13	-31.37	0.102549	1.000000
K	intron_retention	PLOD3	chr7	-	chr7:100853726-100853812				chr7:100853725-100853726;chr7:100853812-100853813		0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	0.00	0.00	0.00	0.00	0.00	2.06	0.00	6.06	0.00	1.89	0.00	3.41	0.00	0.00	0.00	0.00	0.839446	1.000000
N	alternative_acceptor		chr11	+	chr11:66372888-66373215;chr11:66372888-66372940	chr11:66372888-66372959		chr11:66372941-66372959;chr11:66372960-66373215	chr11:66372959-66372960;chr11:66373215-66373216		100.00	95.95	100.00	100.00	97.44	97.06	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	98.15	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	95.00	97.37	98.65	100.00	100.00	100.00	99.33	100.00	0.67	0.977670	0.994346
N	jcn_only_AA	DUS1L	chr17	-	chr17:80018831-80019084	chr17:80018838-80019084		chr17:80018831-80018837	chr17:80018830-80018831		100.00	92.11	100.00	95.65	94.74	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	96.30	100.00	100.00	0.00	0.241564	0.663989
K	cassette	SRSF10	chr1	-	chr1:24294214-24298339	chr1:24294214-24298062;chr1:24298117-24298339		chr1:24298063-24298116			100.00	100.00	90.00	100.00	100.00	95.45	90.00	100.00	96.43	92.42	89.58	93.88	100.00	100.00	100.00	98.51	94.55	100.00	100.00	94.12	100.00	100.00	95.65	97.56	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.06	92.31	95.35	100.00	100.00	0.00	0.663405	0.876605
K	intron_retention	PQLC2	chr1	+	chr1:19653907-19655065				chr1:19653906-19653907;chr1:19655065-19655066		18.75	13.56	13.64	13.33	12.50	23.08	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.27	3.12	NA	23.53	15.38	12.12	18.75	13.21	NA	9.62	NA	20.83	14.29	4.76	NA	21.43	16.00	19.61	18.75	13.89	13.64	11.59	17.07	5.48	0.837524	1.000000
K	intron_retention	SLC26A11	chr17	+	chr17:78222474-78222952				chr17:78222473-78222474;chr17:78222952-78222953		8.82	0.00	6.25	0.00	2.38	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	10.00	0.00	4.76	5.38	0.00	0.00	2.94	0.00	0.00	3.51	0.00	3.03	13.33	14.29	4.05	4.76	1.12	0.00	2.98	2.98	0.907022	1.000000
K	intron_retention	CYC1	chr8	+	chr8:145151154-145151239				chr8:145151153-145151154;chr8:145151239-145151240		3.39	0.00	1.14	1.92	1.85	3.03	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.41	2.15	1.37	0.76	1.59	0.00	0.00	1.16	0.00	0.99	1.61	8.62	4.67	5.00	2.50	1.79	0.93	0.00	1.70	1.70	0.486833	1.000000
K	coord_cassette	C20orf24	chr20	+	chr20:35236222-35240412	chr20:35236222-35236292;chr20:35236404-35238003;chr20:35238162-35240412		chr20:35236293-35236403;chr20:35238004-35238161			60.53	46.15	78.57	60.00	43.75	NA	57.14	59.38	66.67	NA	NA	NA	NA	60.61	70.59	57.14	NA	NA	70.00	63.33	55.56	60.00	57.14	NA	NA	67.65	58.33	66.67	38.46	50.00	71.88	71.79	41.67	69.57	60.87	75.86	51.64	61.97	10.33	0.207753	0.643829
N	alternative_first_exon	CTDSP1	chr2	+	chr2:219263774-219266286,chr2:219265677-219266286,chr2:219260048-219266286,chr2:219265839-219266286,chr2:219265621-219266286,chr2:219265103-219266286;chr2:219264881-219266286;chr2:219264198-219266286	chr2:219259790-219266286	chr2:219264478-219264880;chr2:219264100-219264197	chr2:219259648-219259789			35.90	50.00	62.82	NA	84.21	100.00	7.69	26.32	16.67	21.43	8.00	NA	12.50	22.73	26.67	12.50	10.34	NA	NA	13.33	NA	NA	13.33	NA	NA	20.00	50.91	NA	26.67	NA	60.00	37.50	80.00	57.14	56.52	NA	31.25	24.52	-6.73	0.691113	0.782568
K	intron_retention	FLII	chr17	-	chr17:18149537-18149621				chr17:18149536-18149537;chr17:18149621-18149622		3.64	14.74	6.25	4.69	5.15	5.13	1.56	0.85	1.08	0.68	1.38	0.00	1.99	0.00	1.94	1.79	0.61	0.00	6.06	1.87	4.26	3.41	6.62	4.95	14.55	5.26	5.88	3.51	6.15	4.81	8.51	10.00	7.04	5.36	5.05	4.65	6.55	2.75	-3.79	0.279142	1.000000
N	jcn_only_AA	SHARPIN	chr8	-	chr8:145153893-145153983	chr8:145153898-145153983		chr8:145153893-145153897	chr8:145153892-145153893		100.00	100.00	100.00	100.00	97.06	96.55	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	95.51	NA	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	98.18	96.36	100.00	100.00	100.00	100.00	100.00	0.00	0.194781	0.663989
K	intron_retention	ELOVL1	chr1	-	chr1:43830319-43830408				chr1:43830318-43830319;chr1:43830408-43830409		2.38	0.00	3.27	0.00	2.82	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.00	1.20	3.57	1.92	3.15	2.50	20.00	0.00	2.02	1.56	2.63	2.70	1.82	1.75	0.00	0.00	1.44	3.85	0.00	0.60	0.60	0.411354	1.000000
K	intron_retention	MAP3K11	chr11	-	chr11:65375920-65380488				chr11:65375919-65375920;chr11:65380488-65380489		7.69	17.54	11.30	NA	8.33	NA	2.56	1.30	0.00	1.23	2.53	0.00	2.17	4.94	2.90	1.33	1.10	1.75	5.88	6.00	4.00	5.88	4.17	7.14	12.90	7.69	6.42	5.71	3.64	3.23	7.14	7.37	0.00	4.26	7.14	4.76	4.22	6.57	2.35	0.869653	1.000000
N	jcn_only_AA	DCXR	chr17	-	chr17:79994640-79994734	chr17:79994661-79994734		chr17:79994640-79994660	chr17:79994639-79994640		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	2.53	0.00	0.00	1.74	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.253639	0.663989
K	intron_retention	NAA10	chrX	-	chrX:153196301-153197523				chrX:153196300-153196301;chrX:153197523-153197524		12.50	15.61	14.29	7.14	14.75	6.25	0.00	0.00	0.00	0.00	1.02	0.00	1.10	0.00	3.57	1.30	1.92	0.00	8.59	5.00	8.45	12.50	14.13	5.00	19.63	14.29	16.67	3.85	16.42	4.76	NA	10.34	7.53	7.50	10.17	5.88	8.06	5.00	-3.06	0.753989	1.000000
N	jcn_only_AA	TOR3A	chr1	+	chr1:179057225-179060799;chr1:179057225-179059895	chr1:179057225-179063227					94.12	100.00	93.75	NA	92.86	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	92.31	97.50	100.00	NA	83.33	90.91	NA	94.12	NA	100.00	NA	100.00	91.67	100.00	90.91	100.00	100.00	0.00	0.230716	0.663989
K	alternative_acceptor	ARSK,CTC-554D6.1,SRP19	chr5	+	chr5:112200430-112203100	chr5:112200430-112203068		chr5:112203069-112203100	chr5:112203100-112203101		11.11	8.20	12.50	6.25	8.05	7.55	0.00	0.00	3.12	3.15	3.77	3.06	1.56	4.48	2.63	4.72	7.26	2.02	3.03	4.44	7.02	6.67	8.79	5.48	0.00	11.63	1.64	4.41	5.32	4.39	8.82	9.23	8.33	7.41	7.59	5.88	2.29	6.65	4.36	0.214421	0.671511
N	jcn_only_AD	SFPQ	chr1	-	chr1:35643638-35644265;chr1:35643638-35652547;chr1:35643638-35646735	chr1:35643638-35652601		chr1:35644266-35646735;chr1:35646736-35652547;chr1:35652548-35652601	chr1:35646735-35646736;chr1:35652547-35652548;chr1:35652601-35652602		93.33	95.45	92.68	76.81	79.69	91.20	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	86.36	100.00	NA	92.17	92.86	89.09	83.78	68.00	82.05	87.14	91.30	90.00	63.16	66.67	89.80	98.70	94.20	90.91	63.16	62.50	76.60	93.81	93.33	-0.48	0.732892	0.861015
K	cassette	FCGR2B	chr1	+	chr1:161633144-161641181	chr1:161633144-161640041;chr1:161640063-161641181		chr1:161640042-161640062			99.25	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.303035	0.709176
K	intron_retention	TIMMDC1	chr3	+	chr3:119217775-119219541				chr3:119217774-119217775;chr3:119219541-119219542		1.92	0.00	5.48	NA	3.23	NA	1.18	0.00	0.00	2.13	0.00	0.00	0.00	0.00	2.78	0.00	2.17	0.00	0.00	4.35	4.55	8.70	3.77	11.11	NA	9.52	3.51	6.67	2.56	0.00	5.13	2.99	NA	7.14	5.88	6.38	0.00	3.13	3.13	0.426179	1.000000
N	alternative_donor	SP100	chr2	+	chr2:231327234-231328781;chr2:231327924-231328781	chr2:231328627-231328781		chr2:231327234-231327923;chr2:231327924-231328626	chr2:231327233-231327234;chr2:231327923-231327924		1.93	1.92	3.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.58	0.97	0.84	0.78	0.00	0.00	0.00	1.35	0.00	0.00	0.63	0.00	2.87	5.08	2.25	1.56	0.45	0.81	1.35	0.00	2.73	2.38	1.19	0.00	0.70	0.70	0.241500	0.610791
K	cassette	C14orf166	chr14	+	chr14:52468585-52471079	chr14:52468585-52470957;chr14:52470961-52471079		chr14:52470958-52470960			97.30	100.00	100.00	97.44	100.00	98.18	100.00	100.00	97.83	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	93.33	97.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.640805	0.868138
N	cassette	SIGLEC1	chr20	-	chr20:3675180-3677232	chr20:3675180-3675309;chr20:3675571-3677232		chr20:3675310-3675570			100.00	100.00	100.00	NA	NA	NA	100.00	100.00	99.49	96.51	98.83	97.66	100.00	99.38	99.61	94.12	98.88	96.60	NA	100.00	NA	100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	95.83	100.00	100.00	NA	94.74	100.00	97.56	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	ARFRP1	chr20	-	chr20:62332055-62333181	chr20:62332936-62333181		chr20:62332055-62332935	chr20:62332054-62332055		4.88	7.50	18.64	4.17	9.68	5.33	2.70	0.00	1.89	1.49	2.63	0.00	0.00	2.13	2.88	2.33	2.94	5.88	4.35	5.13	4.62	9.38	5.26	15.69	4.55	4.26	11.76	4.08	6.25	5.00	3.12	7.69	3.70	9.09	3.70	8.89	4.03	3.69	-0.34	0.679155	0.880186
K	intron_retention	TCF25	chr16	+	chr16:89960267-89961445				chr16:89960266-89960267;chr16:89961445-89961446		8.33	6.49	12.66	18.75	9.43	30.00	3.45	4.41	1.64	1.56	4.30	1.85	2.38	5.26	9.88	5.00	2.63	0.00	3.45	7.50	5.88	15.15	8.57	6.52	0.00	8.93	9.21	18.37	17.02	15.56	12.20	12.33	0.00	17.19	12.50	15.05	2.92	7.92	5.00	0.058378	1.000000
K	alternative_last_exon	YIF1B	chr19	-	chr19:38796148-38798067	chr19:38797631-38798067	chr19:38795744-38796147	chr19:38797337-38797630			5.00	7.14	11.76	7.41	9.17	5.74	10.53	5.88	18.52	11.11	8.47	14.29	6.25	15.38	10.00	11.11	10.34	5.88	5.41	11.11	7.37	4.00	6.98	3.85	3.61	8.00	4.76	6.45	6.59	7.35	8.33	10.81	6.01	6.06	10.42	5.63	6.13	8.16	2.03	0.211585	0.435965
K	alternative_acceptor	ADAMDEC1,GSDMD	chr8	+	chr8:144644692-144644839	chr8:144644692-144644831		chr8:144644832-144644839	chr8:144644839-144644840		93.42	100.00	88.33	88.00	90.62	92.31	100.00	100.00	100.00	NA	NA	90.48	100.00	100.00	98.08	NA	92.31	88.24	100.00	93.75	95.28	NA	85.71	89.47	95.65	92.42	89.13	95.83	100.00	93.40	93.33	93.88	93.48	84.62	NA	95.00	100.00	93.59	-6.41	0.178218	0.660713
K	intron_retention	ATP6V0D1	chr16	-	chr16:67472999-67473176				chr16:67472998-67472999;chr16:67473176-67473177		85.94	79.55	88.00	87.50	85.53	85.71	89.00	91.23	85.71	93.02	92.44	88.00	87.95	87.23	85.00	87.32	87.96	88.89	70.45	77.19	75.00	76.60	83.70	80.85	94.12	86.00	86.89	86.84	83.56	87.10	71.64	81.67	68.42	85.92	85.00	82.05	83.75	85.97	2.22	0.865220	1.000000
N	alternative_acceptor	XPC	chr3	-	chr3:14188169-14188789;chr3:14187114-14188789	chr3:14187660-14188789		chr3:14187114-14187659;chr3:14187660-14188168	chr3:14187113-14187114;chr3:14187659-14187660		90.00	96.67	94.62	94.12	97.62	NA	96.55	100.00	97.62	NA	94.44	NA	96.43	92.86	97.83	92.31	94.74	NA	97.73	94.59	98.33	95.45	95.35	93.75	96.30	97.37	97.62	93.33	96.30	90.91	92.98	95.21	94.83	93.75	95.00	87.80	96.49	93.78	-2.71	0.282929	0.709013
N	cassette	NDUFA8	chr9	-	chr9:124906658-124921905	chr9:124906658-124910390;chr9:124910557-124921905		chr9:124910391-124910556			100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	94.87	100.00	100.00	100.00	98.92	96.77	96.55	100.00	96.88	100.00	100.00	100.00	96.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	0.00	0.550749	0.819872
N	alternative_acceptor	STK10	chr5	-	chr5:171488273-171491723	chr5:171491261-171491723		chr5:171488273-171491260	chr5:171488272-171488273		1.41	2.13	3.03	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.79	0.00	1.15	0.00	0.00	1.01	1.11	0.00	NA	1.72	0.00	1.69	2.63	1.92	6.25	1.32	1.82	0.00	1.67	0.00	0.00	2.22	0.00	2.00	2.82	1.34	1.15	0.66	-0.49	0.381002	0.709013
K	cassette	HNRNPUL1	chr19	+	chr19:41810167-41812353	chr19:41810167-41811736;chr19:41811773-41812353		chr19:41811737-41811772			100.00	100.00	95.00	NA	100.00	NA	100.00	97.22	94.87	88.57	92.86	93.33	96.23	95.65	96.00	82.76	87.27	84.62	NA	100.00	100.00	92.86	88.24	NA	100.00	96.77	93.33	100.00	93.33	NA	91.30	94.29	100.00	100.00	88.89	90.00	100.00	97.00	-3.00	0.150702	0.709176
K	alternative_acceptor	STARD3	chr17	+	chr17:37815807-37816463	chr17:37815807-37816412		chr17:37816413-37816463	chr17:37816463-37816464		4.17	8.24	3.80	7.14	4.71	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	2.86	0.00	1.75	0.00	1.82	2.90	1.85	4.17	4.07	2.27	7.14	5.56	2.63	2.78	2.86	4.55	5.26	3.60	3.45	6.56	3.61	3.12	2.64	3.54	0.90	0.715696	0.892080
N	alternative_donor	FAM49A	chr2	-	chr2:16740855-16742257	chr2:16740855-16741386		chr2:16741387-16742257	chr2:16742257-16742258		2.94	0.00	3.09	0.00	0.00	0.26	0.00	0.61	0.45	0.46	0.00	0.89	0.00	0.00	0.83	0.70	0.00	0.62	0.00	3.03	0.00	3.08	0.00	3.46	4.55	2.22	3.03	0.98	0.00	0.65	2.17	1.52	0.00	5.04	3.85	2.76	0.00	2.20	2.20	0.272342	0.645608
K	alternative_last_exon	CORO1B	chr11	-	chr11:67207899-67208595,chr11:67207881-67208595;chr11:67207911-67208595,chr11:67207956-67208595	chr11:67208308-67208595	chr11:67207806-67207910	chr11:67208173-67208307			3.76	2.34	4.84	6.25	2.13	0.00	0.54	0.81	1.12	1.85	1.74	0.00	1.00	0.93	2.38	1.79	0.00	2.70	0.00	2.08	0.93	0.00	1.57	3.70	1.61	5.38	2.88	0.00	3.57	3.23	4.35	2.33	1.83	1.89	6.86	3.12	1.31	2.92	1.61	0.090957	0.305892
N	alternative_acceptor	MYO9B	chr19	+	chr19:17213368-17253329;chr19:17213368-17214066	chr19:17213368-17256206		chr19:17214067-17253329;chr19:17253330-17256206	chr19:17253329-17253330;chr19:17256206-17256207		100.00	97.44	100.00	NA	NA	NA	100.00	100.00	100.00	99.30	99.47	100.00	99.32	100.00	98.97	99.13	99.57	100.00	100.00	100.00	NA	100.00	98.33	100.00	90.91	100.00	100.00	100.00	96.97	92.31	100.00	100.00	90.00	98.80	98.92	99.10	98.38	100.00	1.62	0.105263	0.598353
K	cassette	TCEB2	chr16	-	chr16:2822104-2826993	chr16:2822104-2825451;chr16:2825627-2826993		chr16:2825452-2825626			85.51	74.36	80.00	82.94	82.97	79.04	92.67	92.00	94.20	90.97	90.66	91.67	92.07	92.00	94.12	96.92	94.84	91.75	83.53	88.66	85.63	83.72	83.16	83.95	77.94	86.79	81.51	84.09	84.72	86.67	77.39	86.67	75.49	86.72	81.25	84.43	80.73	87.72	6.99	0.302438	0.709176
K	intron_retention	NFKBID	chr19	-	chr19:36380957-36381275				chr19:36380956-36380957;chr19:36381275-36381276		2.94	6.67	1.82	0.00	0.58	0.00	NA	NA	NA	NA	0.00	NA	NA	NA	NA	6.67	0.00	NA	5.00	0.00	0.00	0.00	2.03	0.00	0.00	2.70	0.00	3.23	0.00	NA	0.00	5.19	2.44	1.03	2.13	0.00	3.72	1.35	-2.37	0.673843	1.000000
K	intron_retention	WIPI2	chr7	+	chr7:5269370-5270465				chr7:5269369-5269370;chr7:5270465-5270466		0.00	4.08	2.56	0.00	0.00	3.57	0.00	3.33	0.00	0.00	0.00	0.00	0.00	4.88	0.00	0.00	0.00	0.00	2.17	0.00	2.17	0.00	0.00	NA	3.03	3.23	2.08	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	6.45	2.15	1.61	-0.53	0.115505	1.000000
K	cassette	TYK2	chr19	-	chr19:10463775-10464717	chr19:10463775-10464203;chr19:10464323-10464717		chr19:10464204-10464322			97.37	100.00	91.30	NA	93.33	NA	97.22	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	100.00	94.74	100.00	100.00	90.00	100.00	81.82	93.10	100.00	100.00	100.00	96.72	100.00	89.29	91.67	96.15	90.91	100.00	100.00	100.00	100.00	100.00	98.69	-1.31	0.441193	0.746343
N	jcn_only_AA	LILRB4	chr19	+	chr19:55177888-55178144;chr19:55177888-55178161;chr19:55177888-55177991	chr19:55177888-55178147		chr19:55177992-55178144;chr19:55178145-55178147;chr19:55178148-55178161	chr19:55178144-55178145;chr19:55178147-55178148;chr19:55178161-55178162		84.89	90.31	87.88	82.37	82.74	83.12	81.41	80.43	81.57	79.04	80.95	81.21	74.17	73.08	71.58	71.81	74.41	72.16	85.23	84.00	84.54	84.50	84.29	82.66	90.91	83.34	85.61	83.91	83.00	82.74	87.05	86.94	87.08	82.26	82.48	83.58	86.16	83.67	-2.48	0.424849	0.694751
N	cassette	UPP1	chr7	+	chr7:48134425-48146469	chr7:48134425-48141420;chr7:48141580-48146469		chr7:48141421-48141579			23.95	7.14	19.14	24.59	15.04	18.63	22.22	25.58	33.33	53.70	28.21	53.41	21.43	41.67	29.03	41.10	25.00	46.43	8.33	17.92	18.75	31.71	27.27	47.13	2.04	27.54	21.49	42.00	38.30	51.85	13.16	10.94	7.46	24.00	16.00	25.58	7.89	24.77	16.87	0.027831	0.421131
K	jcn_only_AA	ORMDL3	chr17	-	chr17:38080474-38083736	chr17:38080479-38083736		chr17:38080474-38080478	chr17:38080473-38080474		75.00	81.25	70.59	NA	NA	NA	92.31	80.00	76.67	NA	75.00	NA	76.92	60.00	75.51	NA	86.67	NA	NA	NA	NA	NA	72.73	NA	66.67	84.62	75.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	79.09	77.50	-1.59	0.581849	0.805192
N	cassette	PSMA4	chr15	+	chr15:78834562-78837210;chr15:78834562-78836531	chr15:78834562-78834824;chr15:78834988-78837210,chr15:78834988-78836531		chr15:78834825-78834987			98.20	100.00	99.24	100.00	96.43	100.00	97.89	99.22	99.29	96.95	95.57	94.44	99.03	98.43	98.39	97.28	95.57	96.46	100.00	98.97	100.00	96.10	97.27	98.32	NA	99.58	98.18	96.59	97.30	96.08	99.24	98.09	100.00	98.00	99.01	96.10	100.00	99.09	-0.91	0.381074	0.709410
K	alternative_acceptor	ARID5B,ZSWIM8	chr10	+	chr10:75560518-75560842	chr10:75560518-75560774		chr10:75560775-75560842	chr10:75560842-75560843		82.76	82.81	87.50	84.38	89.36	80.00	92.86	85.71	94.74	84.00	93.75	NA	90.48	88.89	84.00	80.77	100.00	NA	89.80	88.00	81.25	90.91	84.75	80.77	82.61	96.97	88.89	100.00	91.43	100.00	85.71	89.25	93.55	85.71	88.89	80.39	90.14	86.85	-3.29	0.813854	0.934289
K	alternative_first_exon	RHOC,RP11-426L16.10	chr1	-	chr1:113247791-113253081;chr1:113247791-113249699,chr1:113247791-113249454,chr1:113247791-113249353	chr1:113247791-113248226	chr1:113253082-113253233	chr1:113248227-113248355			1.59	8.33	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.81	0.00	0.00	NA	3.70	2.17	1.52	0.00	2.27	0.00	0.00	0.00	1.59	0.00	0.81	1.72	0.00	0.00	0.00	0.00	2.17	0.00	0.80	0.80	0.790016	0.857457
N	alternative_donor	RP11-321N4.5	chr6	-	chr6:86322639-86324698	chr6:86322639-86324556		chr6:86324557-86324698	chr6:86324698-86324699		78.95	38.24	65.00	66.67	62.50	35.71	60.87	73.33	77.78	68.75	63.16	72.00	59.26	69.23	70.59	70.97	65.96	77.78	40.00	84.21	55.00	75.00	71.05	67.74	30.00	NA	73.33	66.67	65.38	58.62	85.00	74.07	37.04	66.67	62.50	72.34	39.12	78.95	39.83	0.000525	0.078579
N	jcn_only_AD	RP11-437B10.1	chr15	+	chr15:93489447-93492181	chr15:93489571-93492181		chr15:93489447-93489570	chr15:93489446-93489447		0.00	11.76	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	RELA	chr11	-	chr11:65422112-65423158;chr11:65423067-65423158	chr11:65422472-65423158		chr11:65422112-65422471;chr11:65422472-65423066	chr11:65422111-65422112;chr11:65422471-65422472		94.19	93.75	91.06	96.77	96.88	88.00	98.63	99.29	98.68	99.51	98.89	99.69	98.59	99.44	98.78	99.50	99.08	99.70	90.91	94.74	94.12	94.19	94.94	95.81	100.00	95.85	94.84	97.87	98.00	97.63	92.77	91.87	93.33	93.46	94.19	94.81	96.17	95.29	-0.88	0.926291	0.978996
N	alternative_acceptor	MRPS11	chr15	+	chr15:89015957-89018402;chr15:89015957-89018260	chr15:89015957-89018340		chr15:89018261-89018340;chr15:89018341-89018402	chr15:89018340-89018341;chr15:89018402-89018403		100.00	100.00	87.50	90.00	90.24	100.00	93.33	88.24	96.97	97.06	94.74	90.00	94.59	100.00	94.12	94.87	93.33	100.00	87.50	100.00	96.15	85.00	94.74	95.65	100.00	100.00	94.29	95.65	97.30	94.87	100.00	94.87	92.59	90.00	96.30	94.87	93.96	100.00	6.04	0.250908	0.707267
N	alternative_donor	IFI35	chr17	+	chr17:41165352-41165492;chr17:41165346-41165492;chr17:41165397-41165492	chr17:41165391-41165492		chr17:41165346-41165351;chr17:41165352-41165390;chr17:41165391-41165396	chr17:41165345-41165346;chr17:41165351-41165352;chr17:41165390-41165391		57.67	63.16	47.37	50.00	62.50	53.62	50.00	43.32	46.53	38.46	NA	37.50	40.91	46.56	47.75	46.88	40.00	38.46	60.71	53.25	48.00	58.33	60.00	50.77	61.54	49.46	53.57	51.79	50.00	45.10	55.03	53.70	52.63	42.31	NA	55.03	56.67	51.36	-5.31	0.368931	0.650093
K	jcn_only_AD	TRAPPC5	chr19	+	chr19:7745936-7747127;chr19:7745913-7747127	chr19:7745765-7747127		chr19:7745765-7745912;chr19:7745913-7745935	chr19:7745764-7745765;chr19:7745912-7745913		77.78	78.46	90.32	75.00	86.67	85.71	84.62	70.97	71.43	92.86	87.50	85.71	78.43	95.00	87.50	91.18	85.71	93.33	89.29	90.32	75.00	85.71	89.71	90.91	75.00	71.43	72.41	85.71	86.36	87.10	91.67	92.31	88.33	90.91	73.91	88.89	81.54	84.05	2.51	0.921964	0.958585
K	intron_retention	MFSD10	chr4	-	chr4:2933664-2933771				chr4:2933663-2933664;chr4:2933771-2933772		8.82	5.66	5.56	0.00	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	4.35	0.00	0.00	0.00	3.57	0.00	4.35	0.00	4.17	6.25	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.765352	1.000000
K	jcn_only_AA	AFTPH	chr2	+	chr2:64812680-64819021	chr2:64812680-64819018		chr2:64819019-64819021	chr2:64819021-64819022		56.36	21.74	58.82	64.29	59.09	46.15	56.41	67.65	58.73	47.06	65.96	56.76	61.70	61.02	71.93	60.53	50.00	57.14	33.33	55.77	65.00	54.17	53.85	68.57	33.33	64.37	47.62	76.47	59.09	55.00	54.17	43.55	52.63	50.94	61.54	53.33	42.98	58.69	15.71	0.049615	0.663989
N	alternative_donor	TIMP2	chr17	-	chr17:76851947-76853628;chr17:76851947-76852045;chr17:76851947-76853471	chr17:76851947-76853603		chr17:76852046-76853471;chr17:76853472-76853603;chr17:76853604-76853628	chr17:76853471-76853472;chr17:76853603-76853604;chr17:76853628-76853629		96.81	99.24	92.41	100.00	98.82	99.38	100.00	100.00	100.00	99.66	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.78	98.26	99.55	100.00	99.03	98.40	99.07	97.30	98.15	100.00	100.00	100.00	97.26	96.91	98.36	97.99	98.29	99.10	99.16	97.78	-1.38	0.172444	0.563271
N	jcn_only_AD	EHBP1L1	chr11	+	chr11:65341234-65346548;chr11:65345750-65346548	chr11:65343878-65346548		chr11:65341234-65343877;chr11:65343878-65345749	chr11:65341233-65341234;chr11:65343877-65343878		97.83	92.31	98.14	NA	NA	NA	98.10	100.00	100.00	97.87	100.00	100.00	100.00	99.60	98.16	100.00	98.48	100.00	NA	96.43	100.00	100.00	100.00	100.00	100.00	96.58	99.28	100.00	100.00	100.00	93.33	95.24	100.00	100.00	100.00	100.00	100.00	97.20	-2.80	0.673493	0.831228
N	jcn_only_AA	TYROBP	chr19	-	chr19:36398260-36398347;chr19:36398150-36398347;chr19:36398167-36398347	chr19:36398164-36398347		chr19:36398150-36398163;chr19:36398164-36398166;chr19:36398167-36398259	chr19:36398149-36398150;chr19:36398163-36398164;chr19:36398166-36398167		17.59	19.34	17.09	19.58	19.51	19.37	14.45	15.04	14.09	16.40	16.16	16.64	15.66	15.21	15.41	15.72	17.60	18.43	19.50	19.30	17.89	17.98	18.27	18.78	18.60	15.91	16.38	16.42	16.51	16.30	19.59	19.48	19.61	20.50	18.64	19.85	18.97	16.75	-2.22	0.554384	0.787374
K	intron_retention		chr3	+	chr3:52546975-52547145				chr3:52546974-52546975;chr3:52547145-52547146		8.18	15.66	10.84	0.00	3.33	15.79	0.47	0.00	0.00	0.00	0.55	0.00	1.42	0.97	0.00	0.22	0.71	0.00	17.05	7.04	NA	2.36	10.72	2.45	20.16	0.00	6.93	0.43	4.56	0.65	0.00	0.00	17.05	2.18	7.01	1.57	16.36	0.48	-15.87	0.108419	1.000000
K	intron_retention	TGOLN2	chr2	-	chr2:85549865-85552037				chr2:85549864-85549865;chr2:85552037-85552038		5.13	0.00	6.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	1.92	0.00	0.00	0.00	0.594508	1.000000
N	alternative_donor	AUP1	chr2	-	chr2:74754966-74755066	chr2:74754966-74755063		chr2:74755064-74755066	chr2:74755066-74755067		5.08	5.86	8.26	4.82	6.29	2.70	0.00	0.00	0.00	0.00	0.87	0.00	0.59	1.20	1.30	1.96	0.38	0.61	6.11	6.38	3.70	11.58	9.58	5.50	8.25	4.76	5.93	5.22	2.35	4.38	12.26	11.03	8.63	9.35	7.69	8.40	5.99	4.92	-1.07	0.986702	0.996794
K	intron_retention	IDH3B	chr20	-	chr20:2639169-2639283				chr20:2639168-2639169;chr20:2639283-2639284		100.00	95.95	100.00	92.06	94.69	91.73	92.11	100.00	100.00	96.00	96.97	95.65	92.86	93.75	92.31	93.75	97.62	92.31	94.35	94.44	94.51	92.00	95.89	100.00	91.67	100.00	91.89	94.44	96.81	100.00	100.00	91.67	90.85	95.24	98.08	97.56	92.48	100.00	7.52	0.062203	1.000000
N	jcn_only_AA	SARS	chr1	+	chr1:109756751-109766578;chr1:109756751-109766603;chr1:109756751-109766599	chr1:109756751-109757168		chr1:109757169-109766578;chr1:109766579-109766599;chr1:109766600-109766603	chr1:109766578-109766579;chr1:109766599-109766600;chr1:109766603-109766604		0.00	0.00	0.00	5.88	8.82	NA	6.94	4.35	5.50	7.92	7.34	4.08	6.19	9.09	7.32	16.36	6.25	7.50	0.00	2.27	12.50	2.22	0.00	0.00	0.00	0.00	0.00	2.04	4.69	0.00	0.00	0.00	10.00	1.67	3.37	1.54	3.10	1.14	-1.96	0.607621	0.819479
N	alternative_last_exon		chr10	+	chr10:81067329-81072398	chr10:81067329-81070680	chr10:81072399-81076285	chr10:81070681-81070941			19.05	2.56	21.98	0.00	3.23	NA	49.49	48.15	60.00	65.26	58.13	70.89	47.27	45.45	55.00	56.33	64.55	69.86	0.00	NA	5.56	23.61	19.65	27.03	6.06	16.00	29.55	26.00	20.00	42.11	7.14	11.76	0.00	18.71	18.12	33.33	4.31	19.05	14.74	0.473154	0.619765
N	cassette	SNHG6	chr8	-	chr8:67834350-67837671;chr8:67834350-67834848	chr8:67834350-67834558;chr8:67834628-67837671,chr8:67834628-67834848		chr8:67834559-67834627			83.33	70.39	83.33	86.49	80.95	77.44	94.51	91.67	91.94	92.06	93.90	92.16	93.55	94.12	90.91	90.18	93.24	92.86	75.14	63.64	82.58	85.19	82.35	87.27	84.48	84.21	83.91	94.37	92.24	90.32	64.71	73.00	71.15	81.25	84.09	85.22	79.81	83.77	3.96	0.860749	0.951512
N	alternative_acceptor	EMC2	chr8	+	chr8:109488193-109489010	chr8:109488193-109488990		chr8:109488991-109489010	chr8:109489010-109489011		0.00	8.11	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	NA	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.449286	0.755217
N	jcn_only_AA	RPL9	chr4	-	chr4:39456600-39458025;chr4:39456550-39458025	chr4:39456565-39458025		chr4:39456550-39456564;chr4:39456565-39456599	chr4:39456549-39456550;chr4:39456564-39456565		94.39	95.08	92.44	94.12	94.51	94.77	96.55	93.75	96.57	98.60	98.66	98.22	96.69	97.97	96.84	97.03	98.84	97.91	97.73	98.52	96.76	98.95	99.34	99.16	95.60	96.41	95.69	98.70	98.67	98.69	98.90	96.95	97.42	96.10	96.57	95.18	96.62	97.19	0.57	0.887055	0.960308
N	alternative_acceptor		chr17	+	chr17:48762237-48764964	chr17:48762237-48764896		chr17:48764897-48764964	chr17:48764964-48764965		100.00	100.00	100.00	NA	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	96.34	100.00	100.00	100.00	90.32	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
N	intron_retention		chr6	-	chr6:27106461-27114187				chr6:27106460-27106461;chr6:27114187-27114188		0.86	0.00	1.16	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	NA	NA	3.45	1.04	0.38	0.00	0.00	0.00	0.00	0.60	0.22	0.00	2.50	0.00	0.92	0.51	3.23	1.75	0.00	0.00	1.61	0.73	-0.89	0.604321	1.000000
K	cassette	TRAPPC4	chr11	+	chr11:118890028-118892469	chr11:118890028-118890859;chr11:118890964-118892469		chr11:118890860-118890963			96.77	100.00	96.51	97.30	98.04	100.00	100.00	100.00	100.00	100.00	96.15	100.00	96.08	100.00	94.44	96.36	97.96	100.00	100.00	95.92	97.30	97.14	95.74	93.55	100.00	96.72	100.00	96.55	95.92	100.00	94.12	97.30	89.66	100.00	95.65	100.00	100.00	96.75	-3.25	0.855938	0.951375
K	jcn_only_AD	ACTG1	chr17	-	chr17:79479387-79479640;chr17:79479387-79479489;chr17:79479387-79481572;chr17:79479387-79479631	chr17:79479387-79479759		chr17:79479490-79479631;chr17:79479632-79479640;chr17:79479641-79479759;chr17:79479760-79481572	chr17:79479631-79479632;chr17:79479640-79479641;chr17:79479759-79479760;chr17:79481572-79481573		98.61	98.85	98.74	98.51	99.05	100.00	98.90	98.06	97.67	99.11	99.37	99.26	98.89	98.24	98.29	98.78	99.18	99.29	100.00	98.48	98.76	98.64	98.73	99.35	91.67	98.31	98.63	99.24	98.37	99.31	97.90	98.21	100.00	98.85	98.44	98.57	98.90	98.28	-0.62	0.875061	0.937431
N	alternative_acceptor	NIP7,TSC2	chr16	+	chr16:2135324-2136193	chr16:2135324-2135443		chr16:2135444-2136193	chr16:2136193-2136194		4.35	8.51	6.25	NA	6.25	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	6.67	NA	NA	NA	5.26	0.00	4.55	10.00	4.00	NA	0.00	7.14	6.67	NA	7.69	9.09	8.33	11.43	6.67	5.88	4.00	4.00	2.63	5.74	3.11	0.545406	0.822846
K	jcn_only_AA	CAST	chr5	+	chr5:96098077-96100927	chr5:96098077-96100924		chr5:96100925-96100927	chr5:96100927-96100928		70.48	82.35	75.65	80.00	70.31	76.19	80.45	80.28	79.87	81.98	80.25	82.91	79.56	81.68	81.44	80.13	78.42	86.34	70.00	74.22	81.43	75.00	76.39	78.18	71.88	78.00	80.56	78.38	82.56	78.38	76.15	76.25	78.26	77.50	76.38	76.64	78.91	77.08	-1.83	0.917047	0.971511
K	intron_retention	TMEM222	chr1	+	chr1:27660773-27661869				chr1:27660772-27660773;chr1:27661869-27661870		3.23	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	3.45	4.00	3.33	7.69	NA	7.69	5.26	4.76	6.06	3.85	4.00	1.79	8.33	0.00	0.00	2.70	0.00	4.00	4.00	0.820414	1.000000
K	cassette	TRPM4	chr19	+	chr19:49714100-49714420	chr19:49714100-49714271;chr19:49714345-49714420		chr19:49714272-49714344			96.00	100.00	100.00	NA	93.33	93.33	NA	100.00	NA	NA	100.00	NA	94.44	96.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.59	100.00	NA	100.00	91.67	100.00	95.65	100.00	100.00	100.00	100.00	100.00	98.00	-2.00	0.476706	0.770451
K	intron_retention	PHKG2	chr16	+	chr16:30767842-30767910				chr16:30767841-30767842;chr16:30767910-30767911		43.33	50.00	40.38	43.75	45.24	NA	4.00	7.14	4.76	0.00	0.00	NA	2.78	9.09	20.83	9.09	15.15	NA	41.67	38.10	41.67	NA	45.45	NA	47.37	55.00	33.82	20.00	33.33	NA	48.39	51.52	50.00	37.50	39.13	35.29	44.52	40.72	-3.80	0.987691	1.000000
N	alternative_acceptor	FZR1,TECR	chr19	+	chr19:3533397-3534418	chr19:3533397-3533484		chr19:3533485-3534418	chr19:3534418-3534419		5.36	4.35	4.88	5.00	2.78	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	2.56	2.38	3.45	6.67	3.57	5.00	2.08	6.67	1.89	0.00	4.17	5.26	7.81	4.05	3.92	5.13	3.12	6.00	2.32	3.87	1.55	0.355934	0.709013
N	alternative_acceptor	DDX41	chr5	-	chr5:176939642-176939780;chr5:176939668-176939780	chr5:176939647-176939780		chr5:176939642-176939646;chr5:176939647-176939667	chr5:176939641-176939642;chr5:176939646-176939647		94.59	96.83	90.00	94.44	93.18	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	97.44	92.31	97.37	91.67	95.24	92.86	89.74	100.00	92.68	93.75	96.30	93.33	88.89	92.86	92.73	94.44	94.29	92.86	97.13	93.45	-3.68	0.477901	0.777631
N	jcn_only_AA	SYNE2	chr14	+	chr14:23239835-23240017	chr14:23239835-23240013		chr14:23240014-23240017	chr14:23240017-23240018		94.92	93.43	97.01	100.00	97.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	100.00	95.24	100.00	100.00	100.00	100.00	98.48	100.00	97.52	94.74	97.22	97.96	100.00	97.30	97.20	95.35	100.00	98.61	-1.39	0.516767	0.760908
N	alternative_acceptor	RIN3	chr14	+	chr14:93151496-93154270;chr14:93151496-93152957	chr14:93151496-93154030		chr14:93152958-93154030;chr14:93154031-93154270	chr14:93154030-93154031;chr14:93154270-93154271		5.26	8.33	6.58	5.00	7.69	NA	2.00	NA	6.25	0.00	2.11	0.00	0.86	NA	0.00	6.25	2.50	0.00	0.00	0.00	3.03	0.00	6.74	0.00	0.00	0.00	3.39	0.00	1.57	0.00	0.00	0.00	2.70	5.26	0.00	4.44	1.43	0.00	-1.43	0.602031	0.848883
N	alternative_donor	CSNK1A1	chr5	-	chr5:148876424-148884243;chr5:148876424-148878532;chr5:148876424-148885045	chr5:148876424-148885009		chr5:148878533-148884243;chr5:148884244-148885009;chr5:148885010-148885045	chr5:148884243-148884244;chr5:148885009-148885010;chr5:148885045-148885046		33.33	38.24	33.88	32.35	37.50	30.30	37.50	38.05	40.31	44.00	45.31	41.57	34.21	40.20	38.89	48.65	47.15	51.39	22.73	34.72	36.84	43.10	30.93	30.67	30.00	32.67	35.79	47.17	36.36	37.50	42.22	40.91	17.65	33.06	32.43	33.33	32.11	36.38	4.28	0.112150	0.520337
K	intron_retention	CDV3	chr3	+	chr3:133305567-133306005				chr3:133305566-133305567;chr3:133306005-133306006		25.00	0.00	25.00	0.00	0.00	2.08	6.25	0.00	0.00	3.45	4.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	NA	0.00	25.00	23.08	31.25	0.00	NA	NA	0.00	NA	0.00	18.18	18.18	5.88	28.57	30.77	19.05	0.00	11.87	11.87	0.421389	1.000000
N	cassette	MBD2	chr18	-	chr18:51691071-51715243;chr18:51692537-51715243	chr18:51691071-51714083,chr18:51692537-51714083;chr18:51714208-51715243		chr18:51714084-51714207			2.80	3.95	2.86	0.00	0.00	0.00	0.91	0.67	1.16	0.00	0.00	0.76	0.90	1.52	1.67	0.64	0.57	0.56	4.76	3.41	2.15	1.67	2.00	2.65	NA	2.17	2.65	2.04	1.59	2.30	6.15	4.93	2.86	1.64	2.06	3.01	2.86	2.48	-0.38	0.922392	0.980041
K	cassette	GRINA	chr8	+	chr8:145065973-145066412	chr8:145065973-145066045;chr8:145066118-145066412		chr8:145066046-145066117			99.39	100.00	99.52	96.30	92.41	100.00	100.00	100.00	100.00	100.00	99.02	100.00	100.00	100.00	99.74	100.00	97.83	97.25	92.59	99.17	98.38	95.10	96.27	96.82	100.00	100.00	99.39	98.59	100.00	99.01	98.10	97.08	96.43	98.17	98.05	98.80	100.00	99.69	-0.31	0.366370	0.709176
N	jcn_only_AA	DDX23	chr12	-	chr12:49226380-49227059;chr12:49226357-49227059	chr12:49226353-49227059		chr12:49226353-49226356;chr12:49226357-49226379	chr12:49226352-49226353;chr12:49226356-49226357		6.82	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.22	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	CORO1A	chr16	+	chr16:30198042-30198136				chr16:30198041-30198042;chr16:30198136-30198137		0.00	1.94	1.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.00	1.14	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.81	0.00	6.86	0.00	0.71	NA	1.27	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.56	0.00	-0.56	0.353429	1.000000
K	intron_retention	SIRT7	chr17	-	chr17:79870491-79871649				chr17:79870490-79870491;chr17:79871649-79871650		2.04	2.87	7.07	0.00	2.50	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	NA	1.75	3.66	4.49	2.86	3.51	0.00	4.04	3.95	3.53	0.00	4.26	5.00	5.76	4.30	4.22	0.00	5.81	3.95	2.31	2.85	0.54	0.755923	1.000000
K	intron_retention		chr6	-	chr6:86322642-86324698				chr6:86322641-86322642;chr6:86324698-86324699		34.38	22.81	26.53	26.00	24.00	10.42	15.71	27.59	28.57	29.82	31.11	35.59	17.05	27.03	26.19	30.28	33.67	28.00	14.89	39.39	16.67	37.97	30.38	33.96	5.71	26.32	15.91	31.88	22.54	18.46	50.00	43.59	13.11	33.87	35.00	46.58	15.30	30.98	15.68	0.180470	1.000000
K	intron_retention	GID8	chr20	+	chr20:61574536-61574846				chr20:61574535-61574536;chr20:61574846-61574847		6.52	11.36	6.67	0.00	2.78	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	7.69	6.45	3.08	6.25	0.00	11.11	7.27	0.00	2.38	0.00	13.79	7.46	5.00	6.67	8.47	2.94	0.00	4.57	4.57	0.720425	1.000000
N	alternative_donor	KANK2,SBNO2	chr19	-	chr19:1114422-1116019	chr19:1114422-1114675		chr19:1114676-1116019	chr19:1116019-1116020		3.25	NA	1.86	18.18	NA	45.45	0.00	0.00	0.00	0.96	0.00	0.98	0.00	1.49	2.24	1.45	0.00	2.15	NA	1.85	5.00	3.57	2.50	6.67	14.29	2.74	2.33	6.06	4.76	5.68	1.49	1.30	0.00	5.13	3.57	3.95	0.00	1.67	1.67	0.656010	0.846001
N	cassette	PTGES3	chr12	-	chr12:57060051-57065532;chr12:57058585-57065532	chr12:57060051-57064058,chr12:57058585-57064058;chr12:57064149-57065532		chr12:57064059-57064148			91.04	100.00	93.59	90.91	93.51	NA	94.00	94.53	96.79	97.11	95.12	97.65	94.98	92.62	97.55	93.78	94.31	96.25	100.00	94.74	95.35	95.56	94.33	95.58	NA	92.86	91.78	95.50	98.63	97.53	87.50	87.88	88.24	92.98	94.62	91.46	94.98	92.74	-2.24	0.235284	0.709176
N	alternative_donor	CWC15,RPS25	chr11	-	chr11:118888144-118888667	chr11:118888144-118888634		chr11:118888635-118888667	chr11:118888667-118888668		18.75	11.29	33.33	22.22	10.71	3.03	6.25	NA	0.00	11.43	12.20	5.13	6.67	NA	22.22	15.15	10.87	7.14	3.80	28.57	8.57	31.58	13.51	21.74	4.65	30.00	28.57	16.67	14.93	9.09	42.86	30.36	3.70	21.21	16.22	15.22	5.45	29.29	23.84	0.014182	0.251776
N	jcn_only_AA	ITGB7	chr12	-	chr12:53585416-53585642;chr12:53585421-53585642	chr12:53585516-53585642		chr12:53585416-53585420;chr12:53585421-53585515	chr12:53585415-53585416;chr12:53585420-53585421		0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.74	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.75	0.00	0.00	1.49	0.00	0.00	1.54	17.65	0.00	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.37	0.097749	0.663989
N	jcn_only_AA	SIGLEC1	chr20	-	chr20:3677240-3677731	chr20:3677536-3677731		chr20:3677240-3677535	chr20:3677239-3677240		97.58	100.00	100.00	NA	NA	NA	100.00	100.00	99.50	100.00	99.40	98.74	100.00	100.00	99.81	100.00	100.00	100.00	72.73	96.84	100.00	100.00	97.06	100.00	100.00	100.00	100.00	94.44	100.00	98.55	95.65	96.61	NA	100.00	100.00	96.41	100.00	98.79	-1.21	0.527005	0.767430
K	intron_retention	ADRBK1	chr11	+	chr11:67051845-67052317				chr11:67051844-67051845;chr11:67052317-67052318		0.00	3.12	1.63	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	2.80	0.00	8.86	0.00	1.03	0.00	2.27	0.00	0.00	3.11	5.56	0.00	2.83	0.00	2.46	0.00	-2.46	0.189133	1.000000
N	jcn_only_AA	TNFRSF10B	chr8	-	chr8:22880468-22881700;chr8:22881447-22881700	chr8:22880498-22881700		chr8:22880468-22880497;chr8:22880498-22881446	chr8:22880467-22880468;chr8:22880497-22880498		100.00	100.00	100.00	100.00	NA	100.00	94.23	100.00	98.94	91.84	100.00	92.11	96.88	100.00	100.00	93.90	96.55	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.197610	0.663989
K	intron_retention	TNFAIP2	chr14	+	chr14:103599855-103600018				chr14:103599854-103599855;chr14:103600018-103600019		0.53	5.48	1.94	0.00	0.00	0.00	0.00	0.39	0.35	0.09	0.00	0.16	0.64	0.61	0.66	0.26	0.00	0.21	0.00	2.33	1.49	1.07	1.58	0.88	3.12	2.40	3.37	1.59	0.96	1.43	5.08	4.29	8.33	2.60	3.67	1.90	1.88	1.47	-0.41	0.940906	1.000000
N	alternative_donor	CYTH4	chr22	+	chr22:37679083-37688661;chr22:37686501-37688661;chr22:37685931-37688661;chr22:37680847-37688661;chr22:37682292-37688661;chr22:37680152-37688661;chr22:37683679-37688661	chr22:37678630-37688661		chr22:37678630-37679082;chr22:37679083-37680151;chr22:37680152-37680846;chr22:37680847-37682291;chr22:37682292-37683678;chr22:37683679-37685930;chr22:37685931-37686500	chr22:37678629-37678630;chr22:37679082-37679083;chr22:37680151-37680152;chr22:37680846-37680847;chr22:37682291-37682292;chr22:37683678-37683679;chr22:37685930-37685931		98.79	87.88	98.37	NA	100.00	NA	100.00	99.54	98.33	100.00	100.00	100.00	99.50	99.25	98.05	100.00	99.36	100.00	NA	99.42	100.00	100.00	100.00	100.00	94.74	99.13	99.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.50	99.34	-0.16	0.281544	0.650093
K	intron_retention	NXF1	chr11	-	chr11:62566048-62567848				chr11:62566047-62566048;chr11:62567848-62567849		47.30	40.00	46.05	25.00	16.00	NA	23.53	30.19	39.13	13.04	4.35	20.83	17.24	38.78	44.83	28.57	12.12	8.51	20.00	37.50	23.53	41.38	30.77	40.26	NA	55.26	49.09	46.15	39.39	36.84	24.56	31.08	NA	41.18	43.55	51.69	21.77	38.14	16.38	0.219231	1.000000
N	jcn_only_AA	PTOV1	chr19	+	chr19:50361911-50362345;chr19:50361911-50363242;chr19:50361911-50363350	chr19:50361911-50363312		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		0.00	0.00	2.74	1.69	1.43	2.17	3.77	5.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	3.33	2.60	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	1.11	1.11	0.402362	0.674032
K	alternative_acceptor	FDXR	chr17	-	chr17:72861054-72861840	chr17:72861072-72861840		chr17:72861054-72861071	chr17:72861053-72861054		0.00	3.53	2.44	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	2.17	7.41	2.04	NA	0.00	NA	0.00	0.00	3.77	NA	NA	NA	2.70	4.08	3.61	0.00	0.00	0.00	1.08	0.00	-1.08	0.927723	0.978996
K	intron_retention	AP2A2	chr11	+	chr11:993986-994071				chr11:993985-993986;chr11:994071-994072		5.36	6.43	7.69	0.00	1.43	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	4.88	0.00	0.00	6.42	5.88	3.64	9.09	5.41	0.00	2.47	NA	0.00	3.45	0.00	4.17	1.22	0.00	1.56	2.44	0.88	0.754549	1.000000
K	alternative_first_exon	TMEM205	chr19	-	chr19:11456092-11456215,chr19:11456092-11456234,chr19:11456092-11456339;chr19:11456092-11456802	chr19:11456092-11456195	chr19:11456803-11456976	chr19:11456196-11456722			88.89	95.56	92.55	100.00	95.35	100.00	93.75	NA	95.83	100.00	97.22	92.59	95.45	85.71	93.75	90.48	100.00	94.44	93.33	91.67	95.71	92.59	91.11	89.66	100.00	100.00	95.12	100.00	90.48	96.77	94.44	89.87	92.68	84.85	96.77	90.20	94.60	91.67	-2.93	0.309463	0.522953
K	intron_retention	LMNA	chr1	+	chr1:156106159-156106981				chr1:156106158-156106159;chr1:156106981-156106982		87.96	82.03	88.00	85.86	85.19	78.43	81.51	84.55	88.24	87.90	85.62	89.47	85.15	84.71	85.71	86.27	90.05	83.33	80.35	82.86	79.92	85.00	83.39	82.35	81.25	93.62	88.71	80.75	82.36	84.21	81.82	86.21	83.46	86.90	81.43	84.68	81.77	84.63	2.86	0.329228	1.000000
K	intron_retention	EVL	chr14	+	chr14:100610228-100610350				chr14:100610227-100610228;chr14:100610350-100610351		100.00	100.00	NA	93.33	96.26	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	97.96	100.00	93.88	NA	100.00	NA	96.47	81.25	NA	100.00	100.00	91.67	100.00	NA	99.21	100.00	100.00	100.00	99.60	100.00	0.40	0.751527	1.000000
K	intron_retention		chr11	-	chr11:71719892-71720012				chr11:71719891-71719892;chr11:71720012-71720013		5.13	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.17	2.17	1.79	0.00	1.96	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AD	PNISR	chr6	-	chr6:99848188-99848419;chr6:99848188-99850415	chr6:99848188-99848462		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	5.88	0.00	3.03	4.17	0.00	0.00	0.00	0.00	0.00	0.615595	0.810284
K	alternative_donor	ACP2,MTCH2	chr11	-	chr11:47660604-47663952	chr11:47660604-47663930		chr11:47663931-47663952	chr11:47663952-47663953		75.00	100.00	90.32	NA	93.75	NA	86.75	88.00	92.59	90.16	90.00	88.14	86.81	88.24	94.44	86.90	89.41	90.91	NA	85.71	94.44	85.71	84.75	87.10	NA	84.21	80.00	88.89	83.78	86.96	64.71	82.14	72.73	76.74	80.36	87.50	86.78	84.96	-1.82	0.440218	0.700325
K	jcn_only_AD	LENG8	chr19	+	chr19:54960923-54962466;chr19:54960485-54962466	chr19:54960489-54962466		chr19:54960485-54960488;chr19:54960489-54960922	chr19:54960484-54960485;chr19:54960488-54960489		42.86	0.00	35.85	NA	NA	NA	39.13	47.37	30.43	50.00	41.67	NA	23.08	20.59	22.73	20.93	28.57	NA	NA	44.00	NA	40.00	33.33	21.43	34.48	31.82	38.46	60.00	25.00	NA	NA	34.48	NA	28.57	40.00	29.63	28.78	42.86	14.08	0.248345	0.657607
K	intron_retention		chr20	-	chr20:33592374-33593497				chr20:33592373-33592374;chr20:33593497-33593498		3.78	3.45	3.68	0.00	2.90	0.00	0.00	1.37	0.99	2.82	1.00	3.51	1.90	1.35	2.87	2.56	2.08	5.08	0.00	2.59	2.82	1.59	2.83	5.56	11.54	3.90	3.36	2.86	3.26	2.73	4.41	4.49	0.00	6.25	2.86	9.68	0.95	3.18	2.23	0.713283	1.000000
K	intron_retention	ATG4B	chr2	+	chr2:242610821-242611605				chr2:242610820-242610821;chr2:242611605-242611606		27.12	15.07	29.03	24.53	15.89	31.94	7.69	5.88	4.17	10.00	5.41	0.00	12.00	5.88	16.00	3.57	10.34	NA	12.93	30.00	22.22	23.68	15.62	31.25	20.51	40.00	29.85	34.38	22.95	41.38	23.44	26.76	14.40	35.00	28.07	44.64	13.66	25.28	11.62	0.410046	1.000000
N	jcn_only_AA	FHL3	chr1	-	chr1:38461186-38463355	chr1:38463232-38463355		chr1:38461186-38463231	chr1:38461185-38461186		100.00	100.00	100.00	NA	100.00	NA	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	jcn_only_AA	H2AFY	chr5	-	chr5:134678432-134678949;chr5:134675266-134678949	chr5:134670832-134678949		chr5:134670832-134675265;chr5:134675266-134678431	chr5:134670831-134670832;chr5:134675265-134675266		94.58	100.00	93.18	98.26	97.43	97.56	100.00	100.00	100.00	100.00	98.97	100.00	99.43	98.53	100.00	98.53	98.37	100.00	97.59	93.94	98.53	96.99	97.19	98.07	100.00	91.76	95.70	98.14	97.49	98.67	96.52	96.03	100.00	97.14	97.30	98.29	100.00	95.55	-4.45	0.032971	0.663989
N	alternative_acceptor	CTSB	chr8	-	chr8:11701776-11702590;chr8:11702330-11702590	chr8:11701751-11702590		chr8:11701751-11701775;chr8:11701776-11702329	chr8:11701750-11701751;chr8:11701775-11701776		0.90	1.27	1.10	1.24	1.19	1.60	2.18	1.63	2.13	3.54	3.24	4.09	3.20	2.72	3.84	3.23	4.62	5.88	1.84	2.56	2.79	2.88	2.48	3.68	0.69	0.82	0.86	1.22	1.19	1.41	2.30	1.86	1.12	1.43	1.55	1.90	1.56	1.96	0.41	0.838017	0.941931
K	intron_retention	CERS6-AS1	chr2	-	chr2:169631149-169631330				chr2:169631148-169631149;chr2:169631330-169631331		97.78	100.00	100.00	96.43	100.00	98.65	100.00	100.00	97.44	NA	100.00	100.00	96.30	NA	95.16	NA	95.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	96.43	100.00	100.00	89.66	90.91	81.25	100.00	100.00	100.00	100.00	100.00	100.00	97.78	-2.22	0.523200	1.000000
N	cassette	CLPX	chr15	-	chr15:65443252-65445884	chr15:65443252-65444767;chr15:65444875-65445884		chr15:65444768-65444874			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	97.44	100.00	100.00	100.00	95.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	SCAF11	chr12	-	chr12:46315978-46316245;chr12:46316015-46316245	chr12:46313093-46316245		chr12:46313093-46315977;chr12:46315978-46316014	chr12:46313092-46313093;chr12:46315977-46315978		1.92	32.00	4.76	23.81	13.73	46.67	0.00	5.88	6.90	12.82	4.48	5.88	3.57	10.34	7.14	0.00	3.39	11.11	25.71	14.63	39.47	0.00	10.61	10.34	46.88	10.26	5.66	14.29	10.71	30.30	17.39	13.64	28.57	5.45	5.66	14.58	27.14	10.30	-16.84	0.147479	0.651394
K	jcn_only_AA	GMPPA	chr2	+	chr2:220370278-220370436	chr2:220370278-220370416		chr2:220370417-220370436	chr2:220370436-220370437		0.00	0.00	0.00	0.00	0.00	3.51	0.00	0.00	5.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	1.41	4.17	1.82	0.00	0.00	7.41	0.00	0.00	3.12	0.00	6.06	2.04	0.00	0.00	4.48	0.00	0.00	5.00	0.00	0.00	0.00	0.782916	0.906620
K	intron_retention	BCKDHA	chr19	+	chr19:41929075-41930342				chr19:41929074-41929075;chr19:41930342-41930343		4.76	9.52	0.00	NA	8.70	NA	1.25	0.00	0.00	0.00	1.96	0.00	0.00	7.69	0.00	0.00	0.00	0.00	15.09	30.77	2.44	NA	3.03	NA	18.37	NA	3.33	NA	3.45	0.00	9.52	8.70	8.33	0.00	0.00	0.00	8.93	7.69	-1.24	0.982943	1.000000
N	jcn_only_AA		chr17	+	chr17:48755581-48756713;chr17:48755581-48756716;chr17:48755581-48755877;chr17:48755581-48757145	chr17:48755581-48757158		chr17:48755878-48756713;chr17:48756714-48756716;chr17:48756717-48757145;chr17:48757146-48757158	chr17:48756713-48756714;chr17:48756716-48756717;chr17:48757145-48757146;chr17:48757158-48757159		100.00	100.00	97.06	NA	93.75	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	NA	87.50	100.00	100.00	98.33	100.00	NA	94.12	89.86	100.00	94.44	100.00	100.00	93.10	100.00	100.00	97.14	100.00	100.00	100.00	0.00	0.212787	0.663989
N	alternative_acceptor		chr6	+	chr6:146865258-146870604	chr6:146865258-146870599		chr6:146870600-146870604	chr6:146870604-146870605		100.00	95.45	100.00	100.00	97.14	100.00	97.20	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	100.00	82.86	100.00	100.00	100.00	96.30	100.00	100.00	96.67	97.44	100.00	97.62	100.00	97.32	100.00	2.68	0.146703	0.651394
K	coord_cassette	CPNE2	chr16	+	chr16:57161816-57179996	chr16:57161816-57168686;chr16:57168739-57171060;chr16:57171195-57179996		chr16:57168687-57168738;chr16:57171061-57171194			96.23	96.97	94.44	NA	96.97	NA	98.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.57	96.15	100.00	97.37	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	99.16	100.00	0.84	0.569424	0.751088
N	alternative_acceptor		chr19	+	chr19:1221340-1221664;chr19:1221340-1221694	chr19:1221340-1221947		chr19:1221665-1221694;chr19:1221695-1221947	chr19:1221694-1221695;chr19:1221947-1221948		100.00	99.02	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	98.41	100.00	91.43	100.00	100.00	92.86	100.00	94.23	100.00	100.00	100.00	95.45	100.00	100.00	0.00	0.189401	0.660713
N	alternative_acceptor	FBXW2	chr9	-	chr9:123538505-123540628	chr9:123539300-123540628		chr9:123538505-123539299	chr9:123538504-123538505		13.04	5.26	7.50	NA	5.00	NA	0.00	0.00	2.70	2.94	1.82	0.00	2.08	0.00	4.88	3.85	1.85	0.00	NA	6.45	0.00	11.11	4.76	14.29	0.00	8.00	12.12	5.00	3.23	5.88	6.67	10.00	0.00	13.51	9.52	13.89	0.00	6.56	6.56	0.106100	0.598353
K	cassette	OCEL1	chr19	+	chr19:17338009-17339064	chr19:17338009-17338648;chr19:17338815-17339064		chr19:17338649-17338814			81.25	82.00	60.87	NA	83.33	NA	100.00	90.00	100.00	NA	100.00	NA	83.33	70.00	84.00	NA	100.00	NA	87.50	100.00	85.71	NA	90.91	NA	87.88	90.00	90.48	NA	NA	NA	NA	100.00	81.82	NA	NA	NA	85.41	90.00	4.59	0.888739	0.966777
K	intron_retention	TTYH3	chr7	+	chr7:2687689-2689200				chr7:2687688-2687689;chr7:2689200-2689201		7.46	15.79	6.02	NA	NA	NA	0.27	1.68	0.00	0.87	0.54	0.00	1.05	1.59	0.00	0.40	0.73	0.00	NA	5.26	NA	4.00	8.55	4.35	7.69	4.17	4.76	0.00	3.12	0.00	8.57	6.98	14.29	5.68	3.50	2.13	7.69	4.71	-2.98	0.728366	1.000000
N	cassette	NOSIP	chr19	-	chr19:50060507-50063190	chr19:50060507-50062153;chr19:50062236-50063190		chr19:50062154-50062235			100.00	100.00	100.00	100.00	97.40	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.23	100.00	98.53	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.62	98.35	97.58	100.00	94.87	100.00	100.00	100.00	0.00	0.718680	0.899657
N	alternative_donor	MMP14	chr14	+	chr14:23306135-23310699;chr14:23306647-23310699	chr14:23308493-23310699		chr14:23306135-23306646;chr14:23306647-23308492	chr14:23306134-23306135;chr14:23306646-23306647		0.17	0.00	0.26	6.25	0.00	13.33	0.00	0.16	0.11	0.17	0.18	0.28	0.00	0.17	0.25	0.40	0.11	0.19	0.00	0.24	0.79	0.34	0.26	0.30	0.00	0.20	0.11	0.42	0.00	0.92	0.38	0.13	0.00	0.71	0.24	0.43	0.00	0.18	0.18	0.001341	0.093044
N	alternative_acceptor	IKBKB	chr8	+	chr8:42151031-42162704	chr8:42151031-42154763		chr8:42154764-42162704	chr8:42162704-42162705		NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	10.00	10.00	NA	2.04	0.00	0.00	5.88	7.14	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.709013
K	intron_retention	GNPAT	chr1	+	chr1:231409809-231410966				chr1:231409808-231409809;chr1:231410966-231410967		10.53	0.00	4.55	0.00	4.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.13	5.26	5.00	0.00	0.00	4.00	9.09	0.00	6.25	6.67	0.00	6.25	0.00	5.00	5.88	10.26	0.00	0.00	0.00	0.484835	1.000000
N	alternative_donor	CYSTM1	chr5	+	chr5:139568768-139574030;chr5:139554871-139574030	chr5:139554789-139574030		chr5:139554789-139554870;chr5:139554871-139568767	chr5:139554788-139554789;chr5:139554870-139554871		2.86	0.00	11.43	0.00	0.00	NA	0.00	3.12	0.00	5.26	4.51	5.00	3.77	3.27	0.00	0.00	1.16	0.00	0.00	4.42	2.56	0.00	5.56	0.00	NA	4.07	0.00	0.00	8.70	6.06	3.57	3.33	0.00	0.00	0.00	0.00	0.00	3.42	3.42	0.017692	0.264212
N	jcn_only_AA	PDIA4	chr7	-	chr7:148703146-148705250	chr7:148703149-148705250		chr7:148703146-148703148	chr7:148703145-148703146		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.72	3.39	2.41	0.00	2.21	0.00	0.00	1.89	0.91	1.47	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.248374	0.663989
K	cassette	TKT	chr3	-	chr3:53269191-53274266	chr3:53269191-53271812;chr3:53271837-53274266		chr3:53271813-53271836			2.17	1.85	1.23	5.56	1.30	NA	0.65	0.00	2.35	1.08	0.98	1.67	0.95	0.00	1.20	0.42	0.93	0.98	3.57	3.33	2.13	3.41	1.12	2.11	2.65	5.88	2.42	1.37	2.31	2.33	3.45	2.27	1.82	0.74	1.04	1.38	1.83	2.75	0.92	0.603131	0.851370
K	alternative_last_exon	SPHK2	chr19	+	chr19:49131535-49131695;chr19:49131535-49133690	chr19:49131535-49131937	chr19:49133691-49133974	chr19:49131938-49133663			93.75	46.34	90.91	NA	NA	NA	81.25	100.00	100.00	NA	92.31	NA	94.44	100.00	94.44	NA	92.31	NA	31.82	93.75	85.00	NA	92.31	NA	13.73	89.47	92.00	NA	91.67	NA	100.00	90.00	29.27	NA	90.00	NA	39.08	96.88	57.80	0.015065	0.181968
K	jcn_only_AD	FADS3	chr11	-	chr11:61643449-61643582	chr11:61643449-61643576		chr11:61643577-61643582	chr11:61643582-61643583		9.38	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.32	0.00	0.00	NA	0.00	0.00	1.64	0.00	0.00	4.55	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.934970	0.963779
K	jcn_only_AD	PRPSAP1	chr17	-	chr17:74309098-74309901	chr17:74309098-74309279		chr17:74309280-74309901	chr17:74309901-74309902		0.00	0.00	5.36	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.56	3.12	0.00	0.00	NA	NA	0.00	6.00	NA	9.09	NA	0.00	8.00	0.00	0.00	0.00	9.52	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	B3GAT3	chr11	-	chr11:62383272-62383977;chr11:62383709-62383977	chr11:62383713-62383977		chr11:62383272-62383708;chr11:62383709-62383712	chr11:62383271-62383272;chr11:62383708-62383709		9.43	1.48	4.23	0.00	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.98	15.38	0.00	12.50	11.11	25.00	2.91	9.09	5.62	3.03	5.66	0.00	12.90	11.76	6.59	9.68	5.13	6.45	2.20	9.26	7.06	0.129947	0.623599
N	cassette	PLOD1	chr1	+	chr1:12027149-12032928	chr1:12027149-12030726;chr1:12030874-12032928		chr1:12030727-12030873			100.00	100.00	100.00	94.44	98.63	100.00	99.50	97.70	100.00	100.00	100.00	98.90	100.00	100.00	99.12	98.73	98.96	98.70	98.53	94.94	97.06	100.00	100.00	100.00	100.00	100.00	98.62	100.00	98.92	94.74	97.78	100.00	100.00	100.00	100.00	99.18	100.00	98.89	-1.11	0.192796	0.709176
K	jcn_only_AD	HSPE1-MOB4,MOB4	chr2	+	chr2:198400330-198404834	chr2:198400355-198404834		chr2:198400330-198400354	chr2:198400329-198400330		100.00	100.00	98.18	90.91	100.00	100.00	97.30	100.00	100.00	98.55	100.00	98.44	96.88	96.30	98.44	98.70	100.00	100.00	NA	97.87	93.33	100.00	97.83	100.00	NA	97.87	97.50	96.30	96.67	97.87	100.00	97.78	94.12	98.18	100.00	97.26	97.09	98.94	1.84	0.296581	0.657607
K	intron_retention	POLR2B	chr4	+	chr4:57896566-57897064				chr4:57896565-57896566;chr4:57897064-57897065		2.38	0.00	2.68	0.97	0.64	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	1.75	1.67	0.00	0.96	0.00	1.35	0.00	0.00	0.00	0.00	1.11	6.35	4.72	4.10	0.00	1.27	0.00	0.68	0.88	0.20	0.644913	1.000000
K	cassette	SUGP2	chr19	-	chr19:19112484-19114976	chr19:19112484-19114304;chr19:19114418-19114976		chr19:19114305-19114417			0.00	0.00	4.17	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	6.67	NA	0.00	6.25	4.55	6.67	0.00	10.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.363217	0.709176
K	intron_retention	KAT5	chr11	+	chr11:65486221-65486343				chr11:65486220-65486221;chr11:65486343-65486344		13.92	9.43	15.49	11.11	7.46	4.84	6.67	0.00	5.56	3.45	5.71	0.00	12.20	3.92	4.76	4.35	4.69	1.69	6.38	9.84	8.70	13.64	10.29	13.46	7.50	6.90	13.33	10.53	5.63	6.49	16.05	17.57	8.47	11.63	14.29	10.13	7.99	8.37	0.39	0.619901	1.000000
N	alternative_donor	MYO1G,SCRN1	chr7	-	chr7:45002724-45003674;chr7:45002724-45003647	chr7:45002724-45003638		chr7:45003639-45003647;chr7:45003648-45003674	chr7:45003647-45003648;chr7:45003674-45003675		1.35	0.00	1.79	0.00	0.00	0.22	NA	0.75	0.96	0.00	NA	6.67	0.00	0.78	2.43	1.92	0.00	8.00	1.37	1.46	0.63	3.85	0.00	5.00	0.00	1.58	1.05	3.85	1.89	2.38	1.66	1.20	0.00	0.00	0.00	2.99	0.00	1.41	1.41	0.018372	0.264981
K	intron_retention	ZFAND5	chr9	-	chr9:74975138-74975543				chr9:74975137-74975138;chr9:74975543-74975544		6.58	0.00	6.32	0.00	0.00	0.00	1.47	0.00	0.62	0.60	1.48	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	4.81	0.00	3.09	3.19	1.64	0.00	2.83	3.25	0.00	1.25	0.00	7.25	8.23	4.17	5.13	5.11	5.88	0.00	3.82	3.82	0.942087	1.000000
K	cassette	FAAP20	chr1	-	chr1:2121221-2125077	chr1:2121221-2124283;chr1:2124415-2125077		chr1:2124284-2124414			9.76	7.83	14.29	10.14	8.80	9.56	7.84	7.14	8.00	10.26	8.51	8.70	5.56	11.76	9.09	15.15	8.16	4.76	8.29	9.52	10.00	4.17	7.25	23.08	7.84	4.55	11.11	12.90	8.20	7.50	10.26	11.76	8.10	13.89	12.20	7.32	7.84	9.64	1.80	0.305545	0.709176
N	alternative_acceptor	DDIT3	chr12	-	chr12:57911208-57911488;chr12:57911192-57911488;chr12:57911379-57911488;chr12:57911326-57911488	chr12:57911222-57911488		chr12:57911192-57911207;chr12:57911208-57911221;chr12:57911222-57911325;chr12:57911326-57911378	chr12:57911191-57911192;chr12:57911207-57911208;chr12:57911221-57911222;chr12:57911325-57911326		58.00	60.98	61.11	71.43	69.57	68.75	72.22	73.91	80.85	81.82	75.00	NA	72.73	69.23	69.77	NA	NA	NA	61.11	67.74	61.11	63.33	66.67	70.59	61.54	68.49	64.52	68.75	70.00	64.71	58.09	54.88	60.87	63.64	54.84	66.67	61.33	68.11	6.79	0.784408	0.917986
N	cassette	CFP	chrX	-	chrX:47485919-47486539	chrX:47485919-47486171;chrX:47486346-47486539		chrX:47486172-47486345			100.00	100.00	100.00	90.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	100.00	NA	100.00	NA	95.45	100.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
N	alternative_donor	TMEM176A	chr7	+	chr7:150498310-150498623;chr7:150498162-150498623;chr7:150496983-150498623;chr7:150498136-150498623;chr7:150497917-150498623;chr7:150497246-150498623	chr7:150498057-150498623		chr7:150496983-150497245;chr7:150497246-150497916;chr7:150497917-150498056;chr7:150498057-150498135;chr7:150498136-150498161;chr7:150498162-150498309	chr7:150496982-150496983;chr7:150497245-150497246;chr7:150497916-150497917;chr7:150498056-150498057;chr7:150498135-150498136;chr7:150498161-150498162		33.33	NA	40.00	NA	NA	NA	40.62	57.89	58.97	36.36	33.33	38.89	40.00	42.19	50.00	35.71	31.58	30.00	33.33	30.51	48.65	31.25	35.90	36.84	38.89	39.53	44.55	46.43	43.24	45.83	28.00	30.16	NA	NA	38.46	42.86	39.45	36.43	-3.02	0.941036	0.984606
N	cassette	C17orf62	chr17	-	chr17:80403837-80407045;chr17:80403837-80405455;chr17:80403837-80408575	chr17:80403837-80404498;chr17:80404573-80407045,chr17:80404573-80405455,chr17:80404573-80408575		chr17:80404499-80404572			94.97	98.67	97.11	NA	96.88	NA	100.00	99.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.37	92.19	100.00	98.11	100.00	100.00	98.15	95.71	100.00	97.50	100.00	100.00	94.31	100.00	100.00	100.00	100.00	100.00	98.80	-1.20	0.115469	0.709176
K	intron_retention		chr16	-	chr16:30365380-30365504				chr16:30365379-30365380;chr16:30365504-30365505		3.17	0.00	3.80	4.88	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	2.38	0.00	4.17	5.13	0.00	3.00	1.49	1.75	0.00	1.15	10.26	8.00	7.69	1.92	8.00	4.17	0.00	2.19	2.19	0.638932	1.000000
K	intron_retention		chr16	+	chr16:28992937-28993221				chr16:28992936-28992937;chr16:28993221-28993222	chr16:28992791-28992936;chr16:28993222-28993377	2.86	4.17	7.69	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	5.08	6.45	6.06	6.06	0.00	7.50	0.00	3.53	0.00	5.45	9.09	6.67	6.17	4.71	3.49	2.08	1.43	-0.66	0.976457	1.000000
N	cassette	NAAA	chr4	-	chr4:76841954-76846887	chr4:76841954-76842103;chr4:76842277-76846887		chr4:76842104-76842276			NA	91.30	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	96.16	100.00	3.84	0.182897	0.709176
N	alternative_acceptor	P4HB	chr17	-	chr17:79813565-79817056;chr17:79813463-79817056	chr17:79813382-79817056		chr17:79813382-79813462;chr17:79813463-79813564	chr17:79813381-79813382;chr17:79813462-79813463		7.32	13.33	11.31	2.86	8.86	15.38	8.45	8.04	8.46	13.07	11.04	13.95	8.62	8.70	8.86	5.92	12.59	13.73	8.57	7.14	9.63	4.83	4.20	6.07	8.11	9.04	8.01	4.86	7.84	3.91	5.06	7.04	7.27	7.65	6.28	5.01	8.51	7.68	-0.83	0.187500	0.660713
N	jcn_only_AA	PHC2	chr1	-	chr1:33793029-33794470;chr1:33793054-33794470;chr1:33791751-33794470	chr1:33790621-33794470		chr1:33790621-33791750;chr1:33791751-33793028;chr1:33793029-33793053	chr1:33790620-33790621;chr1:33791750-33791751;chr1:33793028-33793029		97.28	100.00	90.98	100.00	100.00	NA	97.01	91.57	93.94	92.86	92.55	100.00	94.87	96.88	94.12	94.20	95.93	94.74	100.00	94.57	100.00	93.55	96.41	100.00	NA	94.81	93.81	90.00	95.58	90.00	97.01	97.06	100.00	92.54	96.30	93.62	100.00	95.84	-4.16	0.058358	0.663989
N	alternative_donor		chr6	-	chr6:109767616-109767881;chr6:109767616-109767885	chr6:109767616-109767898		chr6:109767882-109767885;chr6:109767886-109767898	chr6:109767885-109767886;chr6:109767898-109767899		95.65	91.43	91.67	94.44	92.00	NA	100.00	96.88	100.00	100.00	98.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.33	96.34	100.00	95.95	95.00	97.33	91.46	86.11	94.12	95.51	100.00	94.20	92.98	92.45	94.83	96.49	94.12	98.66	94.93	-3.74	0.334651	0.650093
N	alternative_last_exon		chr18	+	chr18:32870356-32871037;chr18:32870356-32885939	chr18:32870356-32870973	chr18:32885940-32887860	chr18:32870974-32871196			75.00	78.95	77.78	81.82	90.91	75.00	84.62	NA	93.55	85.00	82.14	85.71	79.17	90.00	88.00	78.26	75.00	86.67	85.71	76.92	90.00	85.71	85.19	83.33	88.89	80.00	82.35	84.62	76.92	81.82	84.62	82.35	87.50	80.00	75.00	100.00	85.16	80.00	-5.16	0.407124	0.567228
K	intron_retention	MAD2L2	chr1	-	chr1:11735789-11736102				chr1:11735788-11735789;chr1:11736102-11736103		3.57	0.00	2.05	2.04	1.79	2.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	4.08	2.00	5.26	2.22	4.88	0.00	0.00	2.07	1.69	0.00	1.89	2.86	5.68	0.00	0.00	0.00	4.95	0.00	1.43	1.43	0.911909	1.000000
N	cassette	PDCD6	chr5	+	chr5:304337-314531;chr5:272888-314531;chr5:272888-311407;chr5:304337-311407	chr5:272888-306716,chr5:304337-306716;chr5:306876-311407,chr5:306876-314531		chr5:306717-306875			100.00	100.00	95.40	100.00	96.67	NA	98.15	97.87	94.37	94.55	98.26	96.67	96.83	97.83	94.37	89.61	96.67	96.15	96.97	97.62	98.33	97.30	96.67	100.00	100.00	97.62	98.72	96.30	97.78	96.97	95.74	95.83	97.50	98.11	97.70	100.00	97.83	97.72	-0.10	0.579626	0.837494
K	cassette	SRA1	chr5	-	chr5:139930755-139936731	chr5:139930755-139931566;chr5:139931770-139936731		chr5:139931567-139931769			86.36	96.77	95.95	95.65	96.00	100.00	90.91	100.00	92.31	85.71	91.43	90.00	95.92	100.00	95.12	92.31	93.62	100.00	96.55	92.11	98.88	94.12	95.15	88.24	100.00	100.00	95.59	100.00	93.06	84.21	95.16	94.90	95.70	98.70	97.39	96.49	96.23	97.58	1.34	0.889449	0.966777
K	cassette	COG4	chr16	-	chr16:70517873-70530168	chr16:70517873-70524232;chr16:70524296-70530168		chr16:70524233-70524295			88.00	100.00	100.00	NA	100.00	NA	93.94	100.00	100.00	NA	100.00	NA	100.00	91.67	100.00	NA	100.00	NA	93.75	100.00	100.00	NA	100.00	NA	100.00	100.00	97.44	NA	96.30	NA	100.00	97.44	100.00	100.00	93.33	95.45	100.00	100.00	0.00	0.614126	0.856028
N	cassette	NDUFS2	chr1	+	chr1:161172271-161176196	chr1:161172271-161173226;chr1:161173334-161176196		chr1:161173227-161173333			92.86	100.00	92.77	NA	100.00	NA	100.00	100.00	99.11	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	NA	100.00	100.00	100.00	90.57	100.00	100.00	100.00	95.00	100.00	100.00	100.00	92.31	98.36	NA	100.00	95.45	100.00	100.00	100.00	0.00	0.175055	0.709176
N	alternative_acceptor	HIAT1,NFYC	chr1	+	chr1:41235088-41236345;chr1:41235088-41236380;chr1:41235088-41236383	chr1:41235088-41236068		chr1:41236069-41236345;chr1:41236346-41236380;chr1:41236381-41236383	chr1:41236345-41236346;chr1:41236380-41236381;chr1:41236383-41236384		22.73	12.12	22.22	21.05	15.79	20.00	16.13	35.29	18.18	25.00	25.45	26.92	16.67	33.33	21.21	26.09	21.05	25.00	11.11	23.08	16.67	36.84	17.31	27.27	9.09	15.00	16.13	25.93	21.15	25.00	13.79	20.00	11.54	18.18	23.68	23.81	11.83	22.91	11.08	0.027752	0.546324
N	alternative_donor	NOC2L	chr1	-	chr1:881034-881552	chr1:881034-881526		chr1:881527-881552	chr1:881552-881553		0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	2.50	0.00	3.51	0.00	0.00	NA	0.00	0.00	1.72	0.00	5.88	3.85	1.92	0.00	0.00	2.70	0.88	0.00	-0.88	0.993783	0.997782
N	alternative_donor	INPPL1	chr11	+	chr11:71936211-71939233	chr11:71936585-71939233		chr11:71936211-71936584	chr11:71936210-71936211		5.26	33.33	9.38	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	9.09	NA	34.78	0.00	14.29	NA	NA	NA	NA	0.00	NA	NA	12.50	0.00	16.66	0.00	-16.66	0.202677	0.571503
K	alternative_acceptor	PLXND1	chr3	-	chr3:129304892-129305014	chr3:129304925-129305014		chr3:129304892-129304924	chr3:129304891-129304892		87.50	90.00	86.05	NA	NA	NA	91.52	90.70	92.59	95.45	92.11	90.00	93.16	96.67	91.78	88.14	92.22	91.11	80.00	94.12	NA	NA	91.11	91.30	94.87	85.00	89.58	NA	94.74	NA	NA	84.62	75.00	90.00	84.00	92.50	90.76	90.70	-0.06	0.411495	0.726218
N	cassette	INSIG1	chr7	+	chr7:155094557-155099005;chr7:155094557-155099950	chr7:155094557-155095534;chr7:155095606-155099005,chr7:155095606-155099950		chr7:155095535-155095605			15.79	16.67	12.07	44.76	40.91	43.04	15.28	25.00	19.35	32.83	26.32	31.71	14.29	44.00	19.05	35.86	23.25	30.36	13.51	13.33	20.45	33.81	32.45	37.28	5.56	15.07	16.22	42.59	37.79	37.83	25.86	33.33	21.05	34.88	27.17	31.15	14.79	20.39	5.61	0.131606	0.709176
N	jcn_only_AA	ADSL	chr22	+	chr22:40756497-40757276;chr22:40756497-40760279	chr22:40756497-40757091					10.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	10.00	4.35	1.96	0.00	0.00	0.00	3.23	0.00	0.00	0.00	15.38	0.00	0.00	0.00	6.52	4.65	0.00	2.50	2.50	0.112317	0.663989
N	cassette	TYK2	chr19	-	chr19:10461645-10464717;chr19:10461645-10463601;chr19:10461839-10463601	chr19:10461839-10463109,chr19:10461645-10463109;chr19:10463228-10464717,chr19:10463228-10463601		chr19:10463110-10463227			93.48	87.18	91.55	100.00	90.16	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	95.24	100.00	100.00	NA	89.13	91.89	88.57	93.75	88.89	94.44	100.00	100.00	94.03	95.00	97.50	100.00	97.14	94.37	85.96	88.00	92.50	100.00	94.56	98.57	4.00	0.324983	0.709176
K	intron_retention	TBC1D17	chr19	+	chr19:50386334-50386907				chr19:50386333-50386334;chr19:50386907-50386908		69.77	0.00	68.29	NA	35.00	63.64	0.00	88.89	28.00	NA	9.52	40.00	0.00	95.45	60.53	18.18	40.00	NA	11.54	63.64	42.86	70.00	46.88	70.00	11.11	93.10	52.50	NA	21.74	46.67	36.36	33.33	7.69	30.00	58.82	54.29	3.85	79.33	75.48	0.041047	1.000000
K	intron_retention		chr3	+	chr3:52555717-52555859				chr3:52555716-52555717;chr3:52555859-52555860		3.36	4.38	5.76	0.00	2.78	0.00	0.91	0.00	0.00	0.00	1.51	0.00	1.64	0.85	0.00	0.00	1.85	0.00	5.35	3.95	0.00	1.27	6.83	0.77	5.61	0.61	4.97	0.81	3.40	0.00	0.00	3.92	6.78	0.76	2.64	0.30	4.87	0.73	-4.13	0.128614	1.000000
K	intron_retention	DOK2	chr8	-	chr8:21770022-21771049				chr8:21770021-21770022;chr8:21771049-21771050		13.73	14.08	20.00	NA	7.02	NA	1.14	0.00	NA	NA	1.22	NA	1.52	6.67	NA	NA	0.00	NA	2.50	5.00	0.00	NA	9.71	NA	3.17	0.00	11.11	0.00	6.45	NA	NA	10.00	7.69	0.00	12.07	0.00	2.83	5.00	2.17	0.992619	1.000000
N	alternative_first_exon	COA6	chr1	+	chr1:234509425-234509975;chr1:234492837-234509975	chr1:234509587-234509975	chr1:234509202-234509424;chr1:234492752-234492836	chr1:234509429-234509586			0.00	13.64	5.36	0.00	4.00	10.53	13.21	4.76	12.50	2.17	10.20	5.26	10.64	3.33	12.82	8.77	8.89	20.00	13.04	8.00	6.15	9.52	3.45	7.14	14.29	10.26	6.25	2.22	9.43	2.78	2.90	1.25	6.67	6.25	5.00	2.86	13.12	4.04	-9.08	0.004696	0.034828
N	alternative_acceptor	SIRT7	chr17	-	chr17:79872381-79872479;chr17:79872333-79872479	chr17:79872407-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		92.68	83.33	84.09	93.33	86.21	NA	100.00	100.00	100.00	100.00	87.50	NA	85.71	NA	100.00	100.00	100.00	NA	84.21	92.00	90.48	90.00	91.30	76.19	85.71	82.76	79.49	NA	87.50	100.00	88.57	77.78	68.57	84.21	86.21	85.19	84.96	92.00	7.04	0.216473	0.671511
K	alternative_donor	EIF4E2	chr2	+	chr2:233415455-233421125	chr2:233415929-233421125		chr2:233415455-233415928	chr2:233415454-233415455		5.00	0.00	1.52	0.00	2.33	0.00	1.18	2.27	0.00	0.00	1.66	0.00	2.29	1.90	2.22	1.02	1.66	0.88	2.78	1.89	0.00	0.00	1.04	0.00	0.00	3.12	1.69	0.00	2.63	0.00	2.50	0.00	0.00	1.82	1.67	1.43	0.59	2.38	1.79	0.032925	0.347104
K	jcn_only_AD	SKIV2L	chr6	+	chr6:31937094-31937291	chr6:31937198-31937291		chr6:31937094-31937197	chr6:31937093-31937094		NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	90.00	97.96	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	0.00	0.391002	0.657607
K	intron_retention	SMIM7	chr19	-	chr19:16757612-16757906				chr19:16757611-16757612;chr19:16757906-16757907		87.50	83.33	93.33	84.62	92.54	88.89	89.41	87.80	92.73	86.79	94.74	95.83	87.95	92.86	88.33	93.65	94.12	96.00	88.71	100.00	82.46	100.00	92.68	81.82	80.70	93.10	86.21	100.00	95.24	92.86	90.00	92.00	93.88	100.00	93.48	96.88	88.33	91.43	3.10	0.238417	1.000000
K	intron_retention	SNRNP200	chr2	-	chr2:96943689-96943974				chr2:96943688-96943689;chr2:96943974-96943975		0.00	0.00	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	1.85	3.57	0.00	1.54	1.16	0.00	0.00	0.00	0.00	0.485980	1.000000
N	alternative_acceptor	ABTB1	chr3	+	chr3:127391925-127393210;chr3:127391925-127393187	chr3:127391925-127393233		chr3:127393188-127393210;chr3:127393211-127393233	chr3:127393210-127393211;chr3:127393233-127393234		96.43	96.88	82.76	NA	94.12	NA	95.74	93.62	94.74	93.33	92.11	92.86	93.02	94.87	88.46	95.24	96.55	NA	NA	94.74	NA	81.82	89.29	NA	90.00	86.67	88.24	90.00	93.10	90.00	95.65	96.43	NA	NA	93.33	92.31	94.38	94.81	0.43	0.910162	0.972044
N	alternative_acceptor	SCYL1	chr11	+	chr11:65305654-65305740;chr11:65305654-65305917	chr11:65305654-65305912		chr11:65305741-65305912;chr11:65305913-65305917	chr11:65305912-65305913;chr11:65305917-65305918		8.70	5.00	11.11	6.90	6.90	11.11	8.33	7.69	5.88	6.67	0.00	0.00	8.33	13.33	8.33	4.76	6.67	0.00	7.50	6.67	4.08	8.33	4.76	NA	12.70	8.33	8.00	15.38	6.67	4.76	12.00	12.50	13.21	6.67	10.53	5.88	8.33	8.52	0.19	0.873278	0.956197
K	alternative_acceptor	ZMYND15	chr17	+	chr17:4648074-4648164	chr17:4648074-4648140		chr17:4648141-4648164	chr17:4648164-4648165		2.27	0.00	3.33	5.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	8.33	4.76	0.00	NA	0.00	NA	0.00	0.00	5.00	6.67	0.00	0.00	4.65	3.77	0.00	4.35	0.00	5.26	0.00	1.14	1.14	0.747188	0.904566
N	alternative_acceptor	SIGLEC1	chr20	-	chr20:3687272-3687726;chr20:3687329-3687726	chr20:3687354-3687726		chr20:3687272-3687328;chr20:3687329-3687353	chr20:3687271-3687272;chr20:3687328-3687329		100.00	100.00	100.00	NA	NA	NA	92.62	90.08	93.50	97.37	91.94	87.21	94.44	90.05	92.56	94.74	92.11	89.66	NA	93.55	NA	NA	NA	93.33	91.67	90.24	100.00	91.67	NA	94.12	93.33	100.00	NA	100.00	100.00	90.00	93.53	91.78	-1.75	0.483486	0.782166
K	cassette	AP2M1	chr3	+	chr3:183898040-183898636	chr3:183898040-183898432;chr3:183898439-183898636		chr3:183898433-183898438			41.08	31.19	23.81	33.33	30.92	43.75	81.88	70.16	47.60	73.68	76.39	77.78	79.78	62.92	42.59	73.18	73.31	74.27	36.00	41.04	44.23	31.03	28.80	35.40	40.91	45.87	30.68	50.39	45.45	49.23	42.15	29.77	21.95	32.85	34.22	37.21	38.45	44.01	5.55	0.874423	0.956379
K	intron_retention		chr12	-	chr12:46316366-46316718				chr12:46316365-46316366;chr12:46316718-46316719		6.25	7.14	8.82	4.17	3.23	6.90	1.82	1.85	0.00	0.00	0.00	2.22	2.08	1.79	0.00	1.89	0.00	0.00	0.00	8.11	4.00	6.67	2.38	6.45	10.00	4.26	2.78	0.00	0.00	2.50	6.45	6.38	4.55	7.81	6.90	9.52	3.31	5.25	1.94	0.565235	1.000000
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160101320-160103505;chr6:160100331-160103505;chr6:160016237-160103505;chr6:160100367-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160101368-160103505;chr6:160100377-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160100398-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		4.26	7.14	1.92	8.97	10.00	33.87	NA	4.69	4.76	14.29	9.09	6.11	NA	3.85	2.33	4.35	9.09	2.83	9.09	5.32	8.97	5.62	4.55	1.57	9.09	2.80	3.39	6.38	7.69	7.87	6.67	2.42	9.52	3.03	2.02	3.54	9.09	4.47	-4.62	0.000768	0.242646
N	alternative_donor	ARPC3	chr12	-	chr12:110874010-110874361;chr12:110874010-110874351	chr12:110874010-110874469		chr12:110874352-110874361;chr12:110874362-110874469	chr12:110874361-110874362;chr12:110874469-110874470		5.23	4.78	3.55	4.96	3.88	4.47	0.85	0.96	1.10	1.37	2.52	1.94	1.53	1.41	1.25	1.56	2.51	2.86	6.60	6.52	2.42	5.47	5.60	5.74	5.31	2.81	3.74	2.42	1.80	2.24	7.89	8.70	8.40	5.23	5.39	4.79	5.04	4.02	-1.02	0.795650	0.925498
K	intron_retention	ABHD17A	chr19	-	chr19:1877425-1877506				chr19:1877424-1877425;chr19:1877506-1877507		15.79	9.75	24.53	15.91	15.46	23.81	1.20	4.65	3.85	2.78	2.56	0.00	0.00	7.32	5.88	4.44	3.88	0.00	11.73	12.90	13.79	29.63	19.46	12.50	14.77	13.51	11.11	7.32	12.62	16.67	31.71	24.00	16.75	9.30	11.11	14.29	10.74	13.21	2.46	0.583669	1.000000
K	cassette	CADM1	chr11	-	chr11:115049496-115080293	chr11:115049496-115069125;chr11:115069159-115080293		chr11:115069126-115069158			21.43	14.58	NA	25.00	29.41	6.67	25.00	30.00	26.42	22.58	22.50	36.84	33.33	33.33	20.97	30.77	20.00	22.22	19.05	40.00	26.32	NA	25.00	23.53	0.00	28.57	27.27	NA	30.77	30.00	26.32	23.08	14.86	17.86	15.62	24.32	16.95	29.29	12.33	0.050388	0.564103
N	cassette	MTX2	chr2	+	chr2:177193641-177202220;chr2:177194155-177202220	chr2:177193641-177195311,chr2:177194155-177195311;chr2:177195389-177202220		chr2:177195312-177195388			100.00	100.00	96.15	NA	100.00	NA	100.00	100.00	95.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	96.43	NA	100.00	NA	NA	100.00	96.88	100.00	100.00	100.00	NA	96.30	94.74	100.00	100.00	100.00	100.00	100.00	0.00	0.177808	0.709176
N	alternative_donor	GGA1	chr22	+	chr22:38026166-38026909	chr22:38026178-38026909		chr22:38026166-38026177	chr22:38026165-38026166		100.00	100.00	92.11	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.48	NA	100.00	93.88	90.48	100.00	97.10	100.00	100.00	100.00	100.00	100.00	95.65	NA	100.00	97.73	100.00	93.33	96.23	100.00	100.00	100.00	0.00	0.363217	0.650093
K	jcn_only_AD	DNAJC17	chr15	-	chr15:41071802-41072125	chr15:41071802-41072048		chr15:41072049-41072125	chr15:41072125-41072126		0.00	0.00	0.00	NA	0.00	NA	5.88	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.373901	0.657607
K	cassette	FLNA	chrX	-	chrX:153582852-153583192	chrX:153582852-153582983;chrX:153583080-153583192		chrX:153582984-153583079			100.00	100.00	97.84	86.67	94.59	NA	99.54	100.00	100.00	97.92	98.58	98.50	99.47	99.48	98.06	95.52	99.16	97.35	100.00	98.20	100.00	95.57	98.31	95.79	100.00	98.75	97.98	97.02	98.44	97.52	99.00	100.00	100.00	96.25	97.88	97.02	100.00	99.24	-0.76	0.102464	0.683336
K	alternative_donor	TIMM8B	chr11	-	chr11:111956187-111956701	chr11:111956187-111956690		chr11:111956691-111956701	chr11:111956701-111956702		9.09	0.00	NA	NA	0.00	NA	0.00	NA	NA	7.14	0.00	NA	0.00	9.09	9.09	6.25	5.00	0.00	5.56	NA	0.00	NA	6.25	NA	NA	18.18	0.00	NA	10.00	NA	5.56	0.00	4.76	NA	0.00	0.00	0.00	9.09	9.09	0.043713	0.375646
K	cassette	ARFGAP1	chr20	+	chr20:61914204-61916217	chr20:61914204-61915202;chr20:61915233-61916217		chr20:61915203-61915232			0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	5.56	0.00	0.00	4.76	0.00	0.00	4.08	0.00	0.00	0.00	0.363217	0.709176
K	alternative_acceptor	RRP36	chr6	+	chr6:42993880-42994915	chr6:42993880-42994867		chr6:42994868-42994915	chr6:42994915-42994916		0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	1.10	0.00	0.00	0.00	1.52	0.00	0.00	3.45	0.00	3.45	6.52	0.00	1.59	0.00	0.00	2.13	0.00	3.77	0.00	1.79	0.00	0.00	0.00	0.363217	0.709013
K	cassette	WBP5	chrX	+	chrX:102611535-102612542	chrX:102611535-102612010;chrX:102612090-102612542		chrX:102612011-102612089			45.45	66.67	45.65	NA	53.57	NA	80.36	73.42	75.34	72.58	68.69	79.55	78.00	66.97	73.27	69.15	69.47	72.58	50.00	49.40	59.18	54.35	54.41	54.84	NA	65.43	58.04	62.79	58.67	59.26	37.80	41.77	53.33	56.25	56.96	59.18	66.67	57.42	-9.25	0.303108	0.709176
N	jcn_only_AA	KIAA1468	chr18	+	chr18:33555059-33557398	chr18:33555059-33557372		chr18:33557373-33557398	chr18:33557398-33557399		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	100.00	96.88	100.00	100.00	100.00	100.00	100.00	0.00	0.723371	0.877224
N	alternative_acceptor	ARNTL,SMPD1	chr11	+	chr11:6415272-6415448;chr11:6415272-6415427	chr11:6415272-6415407		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		0.00	3.12	0.00	NA	4.17	NA	5.26	7.14	9.52	6.06	10.64	4.17	0.00	8.33	5.56	8.33	2.56	0.00	5.26	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	4.17	0.00	3.12	0.00	4.35	3.45	3.70	0.00	3.73	1.56	-2.17	0.958112	0.990505
K	cassette	C6orf48	chr6	+	chr6:31803229-31805012	chr6:31803229-31804075;chr6:31804295-31805012		chr6:31804076-31804294			15.79	8.14	14.63	10.34	6.02	15.00	7.87	12.50	17.28	4.55	9.09	9.52	6.32	10.00	18.39	9.33	6.35	7.14	7.32	27.27	16.67	11.43	6.56	13.64	3.12	21.43	14.52	10.26	6.98	9.38	25.00	20.00	7.55	11.63	7.55	7.55	7.44	18.61	11.17	0.007424	0.267181
K	intron_retention		chr13	-	chr13:32977338-32978457				chr13:32977337-32977338;chr13:32978457-32978458		6.35	0.00	10.96	0.00	NA	1.11	0.00	1.75	0.00	0.00	NA	1.46	0.00	0.00	1.23	3.33	NA	2.38	NA	3.57	0.00	2.56	0.00	7.43	0.00	7.53	2.00	0.00	NA	1.96	6.90	8.45	NA	9.09	NA	7.04	0.00	4.96	4.96	0.121732	1.000000
K	alternative_acceptor	TXN2	chr22	-	chr22:36876796-36877610;chr22:36876885-36877610	chr22:36876835-36877610		chr22:36876796-36876834;chr22:36876835-36876884	chr22:36876795-36876796;chr22:36876834-36876835		37.50	7.69	0.00	NA	3.57	NA	22.67	0.00	13.64	30.51	29.91	34.21	19.78	17.65	10.71	12.12	23.89	0.00	16.67	0.00	22.22	9.09	13.16	NA	0.00	0.00	0.00	18.18	11.76	9.09	25.00	5.26	12.50	0.00	7.69	13.64	14.59	8.82	-5.76	0.985303	0.995141
N	jcn_only_AD		chr6	-	chr6:27106461-27114187;chr6:27106461-27114351;chr6:27106461-27114183	chr6:27106461-27113592					0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.67	0.00	0.00	6.25	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AA	SLC39A11	chr17	-	chr17:70721976-70732788;chr17:70645408-70732788;chr17:70725143-70732788;chr17:70709121-70732788	chr17:70691206-70732788		chr17:70645408-70691205;chr17:70691206-70709120;chr17:70709121-70721975;chr17:70721976-70725142	chr17:70645407-70645408;chr17:70691205-70691206;chr17:70709120-70709121;chr17:70721975-70721976		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	4.55	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	RSRP1	chr1	-	chr1:25570125-25571640				chr1:25570124-25570125;chr1:25571640-25571641		29.71	33.06	48.20	37.50	39.02	40.00	33.33	36.36	26.32	13.33	12.50	18.75	44.44	45.00	59.26	NA	16.67	NA	34.69	35.19	39.19	51.22	42.42	54.90	60.00	46.43	49.06	57.69	46.51	38.46	21.43	27.46	18.84	47.22	48.39	43.18	34.01	35.77	1.77	0.507254	1.000000
K	intron_retention	UBC	chr12	-	chr12:125397814-125398041				chr12:125397813-125397814;chr12:125398041-125398042		84.13	93.52	81.30	93.81	90.85	98.27	71.75	71.85	71.64	61.01	71.95	72.93	81.59	81.47	83.12	82.42	81.23	82.06	95.03	75.89	89.04	79.22	78.19	75.03	66.10	72.24	74.10	79.06	80.89	83.95	85.25	83.68	95.05	81.86	82.54	82.76	87.56	78.68	-8.88	0.935875	1.000000
K	alternative_donor	PPP4C	chr16	+	chr16:30094169-30094714	chr16:30094285-30094714		chr16:30094169-30094284	chr16:30094168-30094169		3.31	2.78	4.07	2.78	2.19	0.00	1.01	0.00	1.33	0.00	0.00	0.00	0.00	1.10	3.53	0.00	0.00	0.00	1.56	3.30	1.19	2.33	2.94	3.66	1.82	2.53	2.02	1.10	1.54	1.23	7.21	5.43	5.21	2.80	2.61	3.50	1.69	2.92	1.23	0.515435	0.766242
K	intron_retention	TNFAIP2	chr14	+	chr14:103598100-103599086				chr14:103598099-103598100;chr14:103599086-103599087		2.76	7.89	2.62	0.00	0.00	6.25	0.00	0.83	1.00	0.67	0.88	0.47	1.16	0.63	1.66	0.62	1.06	0.51	10.53	1.66	3.70	2.26	1.78	2.57	5.41	3.46	2.60	3.11	0.00	2.27	3.02	2.37	14.29	3.58	4.40	3.46	6.65	2.21	-4.44	0.439682	1.000000
N	alternative_acceptor	CHI3L1	chr1	-	chr1:203148305-203148888;chr1:203148554-203148888;chr1:203148627-203148888;chr1:203148708-203148888	chr1:203148714-203148888		chr1:203148305-203148553;chr1:203148554-203148626;chr1:203148627-203148707;chr1:203148708-203148713	chr1:203148304-203148305;chr1:203148553-203148554;chr1:203148626-203148627;chr1:203148707-203148708		98.28	100.00	100.00	100.00	97.37	96.39	98.72	99.01	98.13	98.73	98.18	98.04	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	92.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.61	99.44	95.96	100.00	99.56	98.19	100.00	99.50	-0.50	0.790487	0.922539
N	jcn_only_AA	APTX	chr9	-	chr9:32974560-32984628;chr9:32966772-32984628;chr9:32980459-32984628	chr9:32980436-32984628		chr9:32966772-32974559;chr9:32974560-32980435;chr9:32980436-32980458	chr9:32966771-32966772;chr9:32974559-32974560;chr9:32980435-32980436		0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	6.25	0.00	NA	0.00	7.69	7.69	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	3.70	0.00	0.00	0.00	0.717772	0.875250
N	jcn_only_AA	TCIRG1	chr11	+	chr11:67810965-67811088;chr11:67810965-67811037	chr11:67810965-67811020		chr11:67811021-67811037;chr11:67811038-67811088	chr11:67811037-67811038;chr11:67811088-67811089		4.76	2.63	4.05	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	1.20	0.00	7.14	5.84	0.00	8.16	3.92	0.00	0.00	5.47	3.23	0.00	2.94	0.00	2.63	3.85	0.00	8.11	2.70	4.95	0.00	3.69	3.69	0.375841	0.663989
K	intron_retention	CDK5RAP3	chr17	+	chr17:46053005-46053234				chr17:46053004-46053005;chr17:46053234-46053235		100.00	100.00	100.00	95.45	96.55	87.50	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	95.65	100.00	100.00	100.00	96.61	92.00	100.00	100.00	95.77	95.65	98.08	92.00	96.97	100.00	96.97	96.88	100.00	97.62	98.48	100.00	1.52	0.693489	1.000000
N	jcn_only_AA	GIMAP5	chr7	+	chr7:150434797-150437645;chr7:150434797-150439279	chr7:150434797-150437966		chr7:150437646-150437966;chr7:150437967-150439279	chr7:150437966-150437967;chr7:150439279-150439280		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.35	100.00	100.00	100.00	100.00	NA	96.77	100.00	100.00	100.00	90.91	100.00	99.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	99.67	-0.33	0.190864	0.663989
K	jcn_only_AA	CLK3	chr15	+	chr15:74911690-74912349	chr15:74911690-74912307		chr15:74912308-74912349	chr15:74912349-74912350		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	2.17	4.00	2.17	0.00	2.44	0.00	5.00	0.00	2.50	NA	0.00	0.00	0.00	3.12	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	NA	3.03	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_acceptor	CIR1	chr2	-	chr2:175216454-175243650	chr2:175223265-175243650		chr2:175216454-175223264	chr2:175216453-175216454		2.22	0.00	2.04	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	1.92	0.00	0.00	0.00	0.00	0.00	0.00	2.08	2.33	1.54	0.00	0.00	0.00	0.216682	0.671511
N	jcn_only_AD	LAIR1	chr19	-	chr19:54871680-54872616;chr19:54871680-54872277	chr19:54871680-54872522					57.11	75.26	56.12	52.17	64.38	50.00	82.22	71.37	71.24	81.98	84.14	80.88	76.00	75.41	74.07	72.54	85.97	73.21	57.58	59.24	59.09	62.96	68.00	66.67	79.17	64.17	66.61	77.94	74.62	68.09	50.83	50.00	61.11	67.89	67.22	66.52	75.63	61.70	-13.92	0.142805	0.657607
K	alternative_donor	TMEM208	chr16	+	chr16:67262740-67262878	chr16:67262785-67262878		chr16:67262740-67262784	chr16:67262739-67262740		96.43	94.59	100.00	95.74	96.49	93.51	94.29	100.00	94.29	91.67	95.65	87.50	97.37	100.00	94.87	97.78	96.97	94.74	95.79	93.55	94.67	100.00	95.12	91.67	100.00	93.33	96.30	92.31	93.33	91.67	93.75	91.49	92.13	93.55	94.74	95.65	95.19	95.09	-0.10	0.783723	0.920906
K	cassette	CYB5A	chr18	-	chr18:71923011-71928149	chr18:71923011-71924064;chr18:71924089-71928149		chr18:71924065-71924088			4.76	17.65	0.00	7.14	4.00	7.14	0.00	0.00	1.39	1.52	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	2.04	5.88	4.08	8.33	7.14	0.00	0.00	0.00	2.63	4.76	1.28	9.52	6.52	5.00	3.70	6.17	2.38	-3.79	0.250405	0.709176
K	cassette	HNRNPL	chr19	-	chr19:39331200-39334481	chr19:39331200-39332252;chr19:39332323-39334481		chr19:39332253-39332322			3.96	5.81	4.03	4.76	5.13	NA	0.97	3.03	2.63	2.20	1.04	3.20	1.14	1.89	2.44	2.16	1.21	1.52	0.00	3.85	0.00	7.69	3.60	11.76	10.00	4.11	5.15	5.71	2.59	4.65	3.12	7.20	0.00	5.56	2.65	6.72	1.05	3.49	2.43	0.848128	0.949198
N	alternative_donor		chr19	-	chr19:4099413-4099571;chr19:4099413-4101079	chr19:4099413-4101016		chr19:4099572-4101016;chr19:4101017-4101079	chr19:4101016-4101017;chr19:4101079-4101080		87.50	92.68	86.96	92.86	94.59	100.00	100.00	97.67	96.30	97.14	97.87	97.73	97.56	100.00	95.12	97.06	97.14	95.45	92.86	90.91	94.12	92.86	90.91	93.33	83.33	80.77	90.00	95.00	93.94	92.00	85.19	81.82	96.15	86.96	86.21	87.50	94.50	89.20	-5.30	0.395251	0.658590
K	intron_retention		chr9	-	chr9:139836137-139836551				chr9:139836136-139836137;chr9:139836551-139836552		80.77	100.00	79.07	85.00	95.83	NA	72.41	74.19	67.86	83.78	87.50	88.89	72.73	70.00	82.50	82.76	85.71	82.35	100.00	79.31	89.74	88.89	100.00	90.48	NA	86.96	86.11	89.47	87.10	93.75	83.33	83.05	82.35	95.24	84.62	87.50	82.35	80.04	-2.31	0.964744	1.000000
K	cassette	DCTN2	chr12	-	chr12:57925890-57926354	chr12:57925890-57925995;chr12:57926099-57926354		chr12:57925996-57926098			95.65	100.00	97.14	100.00	100.00	100.00	100.00	98.77	98.51	100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	95.16	93.51	96.97	96.43	93.10	98.31	100.00	98.72	97.22	98.21	98.11	96.88	97.22	97.30	89.23	93.98	97.87	97.41	100.00	97.97	-2.03	0.967524	0.991515
N	alternative_donor	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6919905-6920228;chr17:6919845-6920228;chr17:6920001-6920228	chr17:6920005-6920228		chr17:6919845-6919904;chr17:6919905-6920000;chr17:6920001-6920004	chr17:6919844-6919845;chr17:6919904-6919905;chr17:6920000-6920001		91.23	76.85	86.14	83.02	86.05	90.24	91.18	96.67	92.06	96.43	93.94	96.15	93.75	96.77	93.33	93.75	93.33	95.45	78.07	90.20	84.62	84.38	79.71	82.86	86.25	90.91	89.69	92.00	87.23	92.16	84.75	81.13	78.90	84.44	84.21	87.10	82.58	91.07	8.49	0.060029	0.421463
K	intron_retention	MICAL1	chr6	-	chr6:109767066-109767338				chr6:109767065-109767066;chr6:109767338-109767339		9.52	6.80	5.56	6.06	12.24	13.33	9.30	5.13	0.00	20.00	6.25	7.14	7.50	7.14	6.67	10.00	0.00	NA	9.43	8.11	8.62	8.70	12.07	0.00	8.74	8.97	14.63	15.79	10.00	5.56	10.20	14.29	7.55	13.51	14.29	6.90	8.14	8.54	0.39	0.232056	1.000000
N	alternative_acceptor	GLMP	chr1	-	chr1:156263001-156263110	chr1:156263033-156263110		chr1:156263001-156263032	chr1:156263000-156263001		2.86	2.59	7.79	1.59	1.57	0.00	0.72	0.00	2.44	0.80	0.00	0.00	0.98	0.00	1.30	0.00	0.56	0.00	3.28	1.33	0.96	1.72	1.99	1.23	4.59	3.82	1.02	0.00	1.18	0.00	5.45	7.02	4.13	1.77	2.56	0.58	2.93	2.09	-0.84	0.680413	0.880186
N	jcn_only_AA	VNN2	chr6	-	chr6:133065631-133070833	chr6:133070506-133070833		chr6:133065631-133070505	chr6:133065630-133065631		9.82	12.87	16.00	0.00	0.00	11.54	7.89	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.69	5.26	0.00	31.58	18.75	23.81	0.00	5.00	0.00	NA	0.00	0.00	NA	NA	NA	17.60	11.76	29.51	6.25	0.00	0.00	12.87	4.91	-7.96	0.266654	0.663989
K	intron_retention	PLCB3	chr11	+	chr11:64034744-64034824				chr11:64034743-64034744;chr11:64034824-64034825		0.00	1.12	1.56	0.00	1.39	3.12	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.33	0.00	2.63	0.00	5.38	3.12	4.11	0.00	0.00	0.00	7.32	4.35	1.22	0.00	2.38	0.00	0.56	0.00	-0.56	0.888064	1.000000
N	coord_cassette	DERL1	chr8	-	chr8:124033740-124054209	chr8:124033740-124034923;chr8:124035020-124035952;chr8:124035980-124037225;chr8:124037291-124054209		chr8:124034924-124035019;chr8:124035953-124035979;chr8:124037226-124037290			94.59	88.89	96.88	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	98.41	100.00	100.00	100.00	100.00	95.83	95.45	100.00	97.22	97.44	NA	100.00	100.00	100.00	100.00	100.00	97.14	92.50	100.00	100.00	100.00	98.28	100.00	98.57	-1.43	0.953361	0.972993
K	alternative_acceptor	DDX56	chr7	-	chr7:44608592-44608728	chr7:44608605-44608728		chr7:44608592-44608604	chr7:44608591-44608592		0.00	0.00	4.17	1.82	2.90	5.00	0.00	NA	0.00	0.00	2.13	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.56	3.70	1.85	2.38	1.61	2.08	0.00	0.00	0.00	0.00	2.13	4.76	5.88	5.77	3.45	0.00	4.00	1.85	0.00	1.85	1.85	0.375496	0.709013
N	alternative_acceptor	ATP13A1	chr19	-	chr19:19756376-19756455;chr19:19756342-19756455	chr19:19756321-19756455		chr19:19756321-19756341;chr19:19756342-19756375	chr19:19756320-19756321;chr19:19756341-19756342		2.33	0.00	0.00	0.00	5.36	8.26	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	5.66	0.00	13.04	0.00	2.63	0.00	0.00	0.00	5.71	5.56	3.40	5.56	10.00	7.69	0.00	5.36	0.00	5.71	1.24	4.35	3.45	0.00	0.62	0.00	-0.62	0.928156	0.978996
K	intron_retention	MPHOSPH8	chr13	+	chr13:20242672-20244375				chr13:20242671-20242672;chr13:20244375-20244376		21.43	9.09	13.46	NA	6.25	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	7.14	0.00	6.25	0.00	NA	NA	12.00	6.67	0.00	10.00	20.00	0.00	9.52	18.75	8.33	3.57	0.00	11.11	15.56	0.00	18.52	23.81	9.38	0.00	10.31	10.31	0.155472	1.000000
N	cassette	PMF1,PMF1-BGLAP	chr1	+	chr1:156182968-156206078;chr1:156202217-156206078	chr1:156182968-156203418,chr1:156202217-156203418;chr1:156203520-156206078		chr1:156203419-156203519			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	100.00	98.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention	MFSD2A	chr1	+	chr1:40434418-40435176				chr1:40434417-40434418;chr1:40435176-40435177		15.38	0.00	0.00	1.02	0.00	1.40	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.36	2.82	2.31	0.00	0.00	0.00	1.01	0.00	1.26	8.82	0.00	7.14	2.15	3.64	3.20	0.00	0.00	0.00	0.737120	1.000000
K	intron_retention	SHARPIN	chr8	-	chr8:145154109-145154179				chr8:145154108-145154109;chr8:145154179-145154180		20.51	31.25	26.47	24.14	30.61	32.26	3.33	0.00	0.00	0.00	2.13	0.00	5.13	0.00	8.70	2.63	0.00	4.35	24.56	30.43	17.91	16.67	20.00	NA	34.78	17.39	27.78	15.38	8.82	8.00	30.00	33.33	26.23	12.50	23.81	18.42	25.39	18.95	-6.44	0.962547	1.000000
N	alternative_last_exon	SHMT2	chr12	+	chr12:49663471-49663667;chr12:49663471-49666035	chr12:49663471-49663610	chr12:49666036-49668386	chr12:49663611-49663979			99.19	97.92	99.61	97.78	99.35	87.50	100.00	100.00	100.00	100.00	99.74	98.73	100.00	100.00	99.09	100.00	100.00	100.00	96.88	99.78	99.28	100.00	99.76	100.00	88.24	100.00	100.00	99.02	99.67	100.00	100.00	99.56	96.43	100.00	100.00	99.26	97.40	100.00	2.60	0.127327	0.340761
N	jcn_only_AD	TNFRSF14	chr1	+	chr1:2487472-2488023;chr1:2485752-2488023;chr1:2487290-2488023;chr1:2487692-2488023	chr1:2487701-2488023		chr1:2485752-2487289;chr1:2487290-2487471;chr1:2487472-2487691;chr1:2487692-2487700	chr1:2485751-2485752;chr1:2487289-2487290;chr1:2487471-2487472;chr1:2487691-2487692		11.11	20.83	15.38	23.08	11.76	NA	11.43	NA	NA	5.00	5.88	0.00	6.52	23.08	NA	7.69	9.09	10.00	7.14	8.33	12.50	7.89	9.09	7.14	0.00	NA	9.09	8.70	8.82	6.45	10.00	NA	NA	2.70	0.00	2.86	7.14	10.55	3.42	0.439486	0.696909
N	cassette	GAK	chr4	-	chr4:845763-853393;chr4:844873-853393	chr4:845763-853149,chr4:844873-853149;chr4:853282-853393		chr4:853150-853281			2.27	1.14	1.89	1.33	1.25	0.00	0.00	1.00	0.00	3.08	1.37	6.67	0.00	2.17	0.00	3.45	0.00	8.57	1.72	5.48	1.15	4.00	0.00	5.45	0.00	3.97	1.04	0.00	0.00	5.08	5.15	4.62	1.14	3.12	1.56	3.45	0.57	3.12	2.55	0.013042	0.352147
N	jcn_only_AD	LGALS3	chr14	+	chr14:55596835-55604087;chr14:55590821-55604087;chr14:55597645-55604087;chr14:55596366-55604087;chr14:55600111-55604087;chr14:55590877-55604087	chr14:55596019-55604087		chr14:55590821-55590876;chr14:55590877-55596018;chr14:55596019-55596365;chr14:55596366-55596834;chr14:55596835-55597644;chr14:55597645-55600110	chr14:55590820-55590821;chr14:55590876-55590877;chr14:55596018-55596019;chr14:55596365-55596366;chr14:55596834-55596835;chr14:55597644-55597645		100.00	100.00	98.45	94.02	96.23	100.00	98.39	100.00	100.00	92.05	91.75	93.60	98.69	99.75	98.80	97.78	95.95	95.16	100.00	99.07	96.73	97.21	96.90	95.68	100.00	100.00	97.96	96.67	97.92	96.23	97.69	97.17	98.77	96.38	97.26	96.98	99.38	99.88	0.49	0.826816	0.922533
N	alternative_acceptor	TRADD	chr16	-	chr16:67189696-67190412;chr16:67190103-67190412	chr16:67189558-67190412		chr16:67189558-67189695;chr16:67189696-67190102	chr16:67189557-67189558;chr16:67189695-67189696		72.73	70.83	61.54	80.00	76.47	80.00	100.00	96.92	98.72	91.67	100.00	95.45	94.74	97.50	95.00	89.29	NA	87.50	70.00	75.76	83.33	78.57	78.26	66.67	62.50	87.50	78.12	82.86	85.71	84.15	81.48	79.31	NA	66.67	NA	75.61	70.83	84.49	13.66	0.529539	0.811639
K	intron_retention	GGNBP2	chr17	+	chr17:34942396-34942479				chr17:34942395-34942396;chr17:34942479-34942480		6.82	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	2.22	6.25	4.88	1.23	5.88	0.00	0.00	0.00	0.00	0.00	0.00	17.24	13.33	12.50	3.45	2.04	2.99	0.00	1.11	1.11	0.803153	1.000000
K	intron_retention	AC005523.2	chr19	-	chr19:4795104-4795278				chr19:4795103-4795104;chr19:4795278-4795279		100.00	100.00	92.59	100.00	90.14	86.49	93.33	86.67	96.00	96.00	95.74	90.91	100.00	100.00	100.00	93.75	89.55	100.00	93.65	100.00	87.50	86.84	100.00	100.00	86.84	100.00	100.00	100.00	100.00	95.24	96.15	100.00	100.00	100.00	97.62	93.33	96.83	100.00	3.17	0.893996	1.000000
K	cassette	NDUFAF1	chr15	-	chr15:41680721-41687056	chr15:41680721-41686302;chr15:41686557-41687056		chr15:41686303-41686556			6.45	8.11	9.38	6.25	8.82	11.11	5.56	6.67	7.69	15.38	10.00	0.00	10.00	6.25	12.50	17.65	12.50	9.09	7.32	0.00	6.38	6.67	6.45	6.67	3.57	15.38	6.90	6.25	5.88	7.41	10.00	7.41	9.30	5.00	7.69	15.00	7.71	6.56	-1.15	0.950049	0.987421
K	intron_retention		chr16	+	chr16:28986185-28986421				chr16:28986184-28986185;chr16:28986421-28986422	chr16:28986115-28986184	91.30	88.89	84.00	NA	100.00	NA	90.79	100.00	97.06	94.29	96.47	94.74	94.59	92.31	92.31	89.16	100.00	88.89	91.67	86.36	90.00	96.97	91.43	91.30	100.00	100.00	100.00	91.43	92.86	100.00	87.50	92.31	90.91	93.02	95.35	92.50	91.29	91.81	0.52	0.969132	1.000000
N	jcn_only_AD	GGA1	chr22	+	chr22:38014554-38016244	chr22:38016027-38016244		chr22:38014554-38016026	chr22:38014553-38014554		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.34	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.363217	0.657607
K	jcn_only_AA	PTPN6	chr12	+	chr12:7060895-7061275;chr12:7060895-7061145;chr12:7060895-7061179	chr12:7060895-7061074		chr12:7061075-7061145;chr12:7061146-7061179;chr12:7061180-7061275	chr12:7061145-7061146;chr12:7061179-7061180;chr12:7061275-7061276		3.78	0.00	3.52	0.00	1.85	NA	0.75	0.00	0.00	0.00	0.00	0.00	0.64	1.14	0.00	0.96	0.00	0.00	0.00	2.46	0.00	7.41	3.05	0.00	0.00	2.22	1.38	1.04	0.81	NA	9.76	6.78	NA	1.50	1.51	2.33	0.00	2.34	2.34	0.090347	0.663989
N	alternative_acceptor		chr3	+	chr3:52283080-52283213	chr3:52283080-52283189		chr3:52283190-52283213	chr3:52283213-52283214		100.00	100.00	100.00	NA	100.00	NA	100.00	96.00	100.00	94.12	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	96.00	NA	100.00	100.00	NA	100.00	100.00	0.00	0.373901	0.709013
N	jcn_only_AA	KCNN4	chr19	-	chr19:44276288-44278343;chr19:44276284-44278343	chr19:44276256-44278343		chr19:44276256-44276283;chr19:44276284-44276287	chr19:44276255-44276256;chr19:44276283-44276284		0.00	0.00	4.30	1.72	2.42	5.26	4.00	2.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	1.71	0.00	1.53	0.00	5.13	5.00	2.48	2.72	3.82	NA	0.00	5.36	1.89	1.63	2.79	0.00	0.00	0.00	1.37	1.79	3.21	0.00	0.00	0.00	0.747506	0.887098
K	intron_retention		chr15	+	chr15:91436056-91436329				chr15:91436055-91436056;chr15:91436329-91436330		1.45	3.61	5.13	0.00	4.94	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	NA	2.33	5.00	2.86	0.00	4.62	7.14	3.28	7.69	0.00	0.00	2.38	NA	0.00	4.17	1.40	0.00	3.33	4.17	1.86	0.72	-1.14	0.317523	1.000000
N	alternative_first_exon	C19orf24	chr19	+	chr19:1272051-1277181,chr19:1274440-1277181;chr19:1275830-1277181	chr19:1276103-1277181	chr19:1271980-1272050;chr19:1275437-1275829	chr19:1276020-1276102			0.00	10.47	0.00	28.57	24.32	27.78	11.67	7.14	14.29	10.00	12.77	5.88	13.46	NA	13.64	17.14	8.89	7.69	8.47	9.09	15.09	27.27	11.43	NA	27.78	0.00	6.67	18.18	8.00	NA	0.00	0.00	12.50	12.50	16.00	5.26	12.09	0.00	-12.09	0.013222	0.066607
K	alternative_acceptor	CNOT3	chr19	+	chr19:54657578-54657680;chr19:54657578-54659046	chr19:54657578-54658995		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		11.11	13.11	6.25	4.35	8.33	6.90	0.00	7.69	0.00	0.00	0.00	0.00	0.00	11.76	0.00	0.00	0.00	0.00	9.86	10.71	6.25	0.00	6.90	0.00	11.54	4.55	2.86	4.35	3.12	3.85	5.13	7.55	7.79	0.00	4.55	10.26	8.82	9.20	0.38	0.605011	0.848883
N	cassette	STAC3	chr12	-	chr12:57638749-57642488;chr12:57638995-57642488;chr12:57640685-57642488	chr12:57638749-57641908,chr12:57638995-57641908,chr12:57640685-57641908;chr12:57641982-57642488		chr12:57641909-57641981			100.00	100.00	100.00	100.00	100.00	93.33	100.00	98.64	95.31	100.00	98.48	100.00	94.67	96.95	96.43	100.00	95.74	95.83	93.33	100.00	100.00	100.00	100.00	100.00	93.55	98.73	97.06	100.00	94.74	96.67	96.72	100.00	97.44	100.00	93.02	94.44	96.06	98.69	2.63	0.190343	0.709176
K	intron_retention	FMNL1	chr17	+	chr17:43323698-43323871				chr17:43323697-43323698;chr17:43323871-43323872		56.76	76.67	72.22	78.57	81.48	NA	NA	NA	NA	NA	NA	NA	NA	NA	76.92	NA	38.89	NA	64.71	72.73	70.00	81.82	78.12	NA	62.50	60.61	85.29	72.73	80.95	NA	52.27	68.12	64.00	66.67	85.19	66.67	64.35	58.69	-5.67	0.520725	1.000000
N	jcn_only_AD		chr12	-	chr12:57867960-57868234	chr12:57867960-57868205		chr12:57868206-57868234	chr12:57868234-57868235		95.00	95.05	96.00	100.00	98.48	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	96.00	92.86	100.00	NA	94.92	NA	100.00	96.43	95.59	100.00	98.36	NA	100.00	100.00	92.13	100.00	96.23	92.86	98.00	98.22	0.22	0.922408	0.958585
N	cassette	YTHDF2	chr1	+	chr1:29064842-29095440;chr1:29064851-29095440	chr1:29064842-29068914,chr1:29064851-29068914;chr1:29070499-29095440		chr1:29068915-29070498			88.71	100.00	95.15	92.31	100.00	NA	91.46	92.45	87.32	97.12	96.12	96.55	91.76	94.23	93.15	95.65	97.46	92.50	57.14	84.21	69.23	95.77	96.23	94.19	NA	82.35	85.00	94.74	94.03	91.30	84.62	83.33	75.00	93.55	88.46	91.94	91.46	86.66	-4.80	0.581056	0.838255
N	alternative_acceptor	DENND2D	chr1	-	chr1:111731876-111734761	chr1:111733688-111734761		chr1:111731876-111733687	chr1:111731875-111731876		26.92	9.09	29.73	15.79	14.29	9.09	1.79	2.78	2.50	2.56	4.88	5.36	4.76	2.99	4.35	3.77	6.25	6.06	NA	24.14	7.14	32.00	24.00	41.30	NA	23.91	20.69	13.21	12.12	10.10	21.43	25.00	10.00	33.33	23.33	38.53	6.92	22.67	15.75	0.070043	0.585944
N	alternative_last_exon	CTDSPL	chr3	+	chr3:49720580-49720690,chr3:49720580-49721438;chr3:49720580-49728562	chr3:49720580-49720669	chr3:49728563-49728680	chr3:49720670-49721396			100.00	99.30	95.65	100.00	100.00	100.00	97.62	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	97.97	100.00	100.00	100.00	99.65	100.00	0.35	0.630075	0.763478
N	cassette	UBE2F	chr2	+	chr2:238881868-238903385;chr2:238881868-238896604	chr2:238881868-238882290;chr2:238882390-238896604,chr2:238882390-238903385		chr2:238882291-238882389			0.00	0.00	0.00	5.88	0.00	0.00	0.00	1.53	1.33	0.00	1.92	2.38	3.17	1.05	1.27	2.17	2.33	0.00	0.00	1.75	2.38	0.00	1.79	4.17	0.00	0.00	2.00	0.00	1.85	0.00	0.00	4.55	0.00	1.85	2.17	3.03	0.00	0.53	0.53	0.764892	0.926755
N	jcn_only_AA	SIGLEC1	chr20	-	chr20:3686593-3686993	chr20:3686688-3686993		chr20:3686593-3686687	chr20:3686592-3686593		92.86	100.00	100.00	NA	NA	100.00	98.60	98.48	99.56	98.86	98.15	97.78	99.00	98.29	98.55	100.00	100.00	95.87	NA	92.86	100.00	NA	100.00	92.75	100.00	97.14	100.00	95.65	95.45	96.77	100.00	97.96	NA	100.00	100.00	91.95	99.50	97.72	-1.78	0.075245	0.663989
N	coord_cassette	SUSD1	chr9	-	chr9:114804241-114825216	chr9:114804241-114814678;chr9:114814719-114820707;chr9:114820967-114825216		chr9:114814679-114814718;chr9:114820708-114820966			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
N	alternative_acceptor		chr2	+	chr2:68621309-68622745;chr2:68621309-68621748;chr2:68621309-68622815	chr2:68621309-68622811		chr2:68621749-68622745;chr2:68622746-68622811;chr2:68622812-68622815	chr2:68622745-68622746;chr2:68622811-68622812;chr2:68622815-68622816		96.02	100.00	96.84	100.00	100.00	NA	99.09	98.77	100.00	99.20	99.27	99.64	100.00	99.12	100.00	99.40	100.00	99.80	NA	97.30	100.00	98.21	98.61	98.55	90.00	96.98	100.00	98.19	99.23	100.00	99.22	98.67	100.00	98.05	98.66	98.52	100.00	98.03	-1.97	0.968930	0.992075
N	jcn_only_AA		chr9	+	chr9:140509453-140509505;chr9:140509453-140509548	chr9:140509453-140509525		chr9:140509506-140509525;chr9:140509526-140509548	chr9:140509525-140509526;chr9:140509548-140509549		53.57	73.95	80.77	65.22	78.26	70.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	NA	65.09	61.54	86.49	75.00	76.92	NA	76.61	71.43	79.17	100.00	100.00	86.67	36.84	56.25	62.22	100.00	55.56	76.92	75.28	66.48	-8.80	0.484031	0.742203
K	intron_retention	PFKL	chr21	+	chr21:45740031-45741611				chr21:45740030-45740031;chr21:45741611-45741612		6.15	1.52	4.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52	0.00	0.00	3.33	4.35	3.45	22.92	0.00	3.45	3.33	0.00	2.86	5.13	0.00	3.33	1.89	4.82	2.70	2.42	0.00	-2.42	0.518823	1.000000
K	intron_retention		chr16	-	chr16:28916366-28916717				chr16:28916365-28916366;chr16:28916717-28916718		0.00	0.00	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.67	5.26	0.00	NA	2.56	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	cassette	ALKBH6	chr19	-	chr19:36501548-36503922;chr19:36501586-36502305	chr19:36501586-36501795,chr19:36501548-36501795;chr19:36501980-36502305,chr19:36501980-36503922		chr19:36501796-36501979			82.35	100.00	92.86	NA	80.00	NA	NA	NA	NA	NA	90.91	NA	NA	NA	90.91	NA	80.00	NA	85.71	85.71	75.00	NA	90.00	NA	76.92	92.86	89.47	NA	NA	NA	86.67	80.00	85.71	NA	NA	NA	85.71	86.19	0.48	0.973174	0.994559
K	intron_retention	PREB	chr2	-	chr2:27354377-27354539				chr2:27354376-27354377;chr2:27354539-27354540		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	3.57	0.00	NA	2.38	0.00	0.00	1.75	0.00	5.26	4.65	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.707829	1.000000
N	alternative_donor	CDC16	chr13	+	chr13:115016150-115022552	chr13:115016795-115022552		chr13:115016150-115016794	chr13:115016149-115016150		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	5.88	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.70	0.00	0.00	0.00	0.391002	0.657675
K	jcn_only_AA	COL4A3BP	chr5	-	chr5:74664484-74675161	chr5:74670017-74675161		chr5:74664484-74670016	chr5:74664483-74664484		87.50	61.54	90.00	NA	NA	NA	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	NA	8.33	75.00	NA	81.82	75.00	92.86	NA	90.00	71.43	NA	NA	NA	70.00	83.33	NA	100.00	92.86	80.00	80.77	88.75	7.98	0.437636	0.704827
N	cassette	NISCH	chr3	+	chr3:52524248-52525367;chr3:52523695-52525367	chr3:52523695-52524720,chr3:52524248-52524720;chr3:52524850-52525367		chr3:52524721-52524849			84.93	77.42	77.46	NA	86.00	NA	96.67	NA	100.00	100.00	95.92	NA	100.00	100.00	91.67	100.00	97.06	NA	92.31	83.33	85.00	100.00	86.17	NA	74.07	88.24	84.06	NA	100.00	NA	80.00	75.61	95.00	85.00	87.27	91.67	93.66	84.93	-8.72	0.736188	0.908769
N	jcn_only_AA	MCRS1	chr12	-	chr12:49946666-49952625;chr12:49952534-49952625;chr12:49950534-49952625	chr12:49952513-49952625		chr12:49946666-49950533;chr12:49950534-49952512;chr12:49952513-49952533	chr12:49946665-49946666;chr12:49950533-49950534;chr12:49952512-49952513		96.00	97.14	93.55	94.59	94.23	100.00	100.00	100.00	92.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.00	100.00	95.83	93.33	100.00	100.00	100.00	83.33	97.06	94.74	100.00	94.59	95.24	90.62	100.00	93.75	100.00	96.55	100.00	98.00	-2.00	0.363888	0.663989
N	jcn_only_AA	SGSM2	chr17	+	chr17:2282498-2282705;chr17:2282498-2283558	chr17:2282498-2282725		chr17:2282706-2282725;chr17:2282726-2283558	chr17:2282725-2282726;chr17:2283558-2283559		100.00	100.00	100.00	NA	90.48	NA	100.00	90.00	100.00	NA	100.00	NA	94.12	NA	89.47	100.00	100.00	NA	NA	100.00	100.00	100.00	96.55	100.00	100.00	100.00	93.55	92.00	96.67	100.00	100.00	100.00	NA	100.00	95.65	100.00	100.00	100.00	0.00	0.837148	0.935389
K	cassette	ARRB2	chr17	+	chr17:4621319-4621906	chr17:4621319-4621555;chr17:4621641-4621906		chr17:4621556-4621640			80.45	64.39	74.92	71.74	72.14	72.73	98.67	98.59	99.12	96.26	98.18	98.10	98.67	98.05	96.25	98.99	97.91	99.08	69.07	82.50	87.80	71.74	72.70	78.51	64.71	88.36	84.76	92.86	92.02	92.76	71.60	71.43	66.67	81.91	73.51	78.37	67.87	85.43	17.56	0.271065	0.709176
K	intron_retention		chrX	-	chrX:153761018-153761156				chrX:153761017-153761018;chrX:153761156-153761157		0.00	0.00	0.00	0.00	7.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.71	1.72	3.19	3.70	0.00	2.08	3.53	0.00	3.26	2.27	1.96	3.12	2.04	2.38	5.88	0.00	0.00	0.00	0.00	0.900634	1.000000
N	cassette	USF1	chr1	-	chr1:161011202-161011905	chr1:161011202-161011623;chr1:161011637-161011905		chr1:161011624-161011636			100.00	100.00	96.88	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	NA	100.00	100.00	NA	91.43	NA	100.00	100.00	97.62	100.00	100.00	100.00	94.29	93.42	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_donor	DGCR2,ZMAT5	chr22	-	chr22:30144561-30162937	chr22:30144561-30162860		chr22:30162861-30162937	chr22:30162937-30162938		21.43	38.10	40.91	NA	35.00	NA	22.22	26.32	25.00	13.33	20.69	NA	18.42	11.76	41.67	8.33	13.79	NA	23.08	13.33	14.81	NA	25.93	NA	13.33	8.70	27.78	NA	21.43	20.00	20.00	22.22	25.00	NA	12.50	NA	22.65	16.66	-5.98	0.172541	0.563271
K	alternative_acceptor	AP1B1	chr22	-	chr22:29730340-29734978	chr22:29730400-29734978		chr22:29730340-29730399	chr22:29730339-29730340		94.59	100.00	97.83	90.91	93.75	NA	90.40	93.33	93.75	93.44	91.88	94.74	94.86	96.30	92.86	91.55	93.77	92.06	100.00	95.65	86.67	93.94	96.71	97.56	100.00	97.83	95.56	95.00	94.81	95.65	93.55	92.31	97.30	96.55	95.87	94.44	98.65	95.12	-3.53	0.313201	0.709013
K	intron_retention		chr3	+	chr3:183862496-183862671				chr3:183862495-183862496;chr3:183862671-183862672		2.94	2.88	3.12	1.61	1.04	2.30	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00	2.56	2.86	6.98	3.85	2.46	0.00	0.00	0.00	0.00	0.00	0.00	2.22	3.00	0.00	2.56	0.00	1.68	0.00	-1.68	0.929907	1.000000
K	intron_retention	C15orf48	chr15	+	chr15:45722854-45722967				chr15:45722853-45722854;chr15:45722967-45722968		20.33	22.00	21.39	27.91	30.25	24.59	18.18	17.81	20.36	19.91	17.26	19.77	14.29	19.01	21.90	20.02	12.77	13.06	17.78	21.58	22.37	30.07	36.40	27.53	NA	25.17	24.49	31.23	33.13	27.35	20.72	21.72	19.23	29.19	30.11	27.51	18.18	20.52	2.34	0.371004	1.000000
K	alternative_donor	NIPBL	chr5	+	chr5:37064081-37064628	chr5:37064122-37064628		chr5:37064081-37064121	chr5:37064080-37064081		18.52	12.50	18.42	26.67	18.52	27.27	23.08	38.89	37.50	36.36	33.33	29.41	21.43	NA	43.75	45.45	22.22	43.75	21.05	15.38	28.57	26.67	15.15	30.00	8.33	25.00	15.38	18.75	15.62	30.43	21.43	20.51	14.29	18.18	31.03	26.32	17.67	21.43	3.76	0.182503	0.563271
K	intron_retention	TMEM176A	chr7	+	chr7:150501574-150501914				chr7:150501573-150501574;chr7:150501914-150501915		11.76	NA	5.56	NA	NA	NA	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	1.72	3.17	4.94	4.55	7.89	0.00	0.00	2.50	6.73	0.00	2.78	0.00	4.00	8.06	8.82	0.00	15.38	6.67	0.00	2.83	2.83	0.820789	1.000000
N	jcn_only_AA	TACC3	chr4	+	chr4:1741730-1742552;chr4:1741730-1742563;chr4:1741730-1742558	chr4:1741730-1742208		chr4:1742209-1742552;chr4:1742553-1742558;chr4:1742559-1742563	chr4:1742552-1742553;chr4:1742558-1742559;chr4:1742563-1742564		0.00	1.79	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	1.52	NA	0.00	0.00	2.04	NA	0.47	0.00	1.79	0.00	0.00	0.00	0.00	10.00	0.00	NA	0.00	NA	0.00	2.38	0.00	0.00	0.00	0.00	0.23	0.00	-0.23	0.510503	0.760069
K	cassette	MRPL22	chr5	+	chr5:154320826-154335930	chr5:154320826-154330362;chr5:154330499-154335930		chr5:154330363-154330498			91.67	68.42	94.12	NA	88.24	NA	83.33	100.00	94.44	100.00	68.97	90.91	91.30	100.00	89.47	83.33	84.62	90.91	NA	90.00	92.86	NA	90.91	80.00	NA	100.00	87.50	80.00	89.47	93.75	80.00	77.78	100.00	93.75	90.00	88.24	87.31	95.84	8.52	0.347006	0.709176
N	alternative_acceptor		chr16	+	chr16:89620972-89622328;chr16:89620972-89622285	chr16:89620972-89623294		chr16:89622286-89622328;chr16:89622329-89623294	chr16:89622328-89622329;chr16:89623294-89623295		100.00	95.12	94.87	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	95.35	100.00	88.00	90.00	94.12	100.00	100.00	80.00	100.00	94.44	100.00	96.77	100.00	93.55	100.00	100.00	0.00	0.925032	0.978996
N	jcn_only_AA	LILRA6,LILRB3	chr19	-	chr19:54722736-54722997;chr19:54722675-54722997	chr19:54722708-54722997		chr19:54722675-54722707;chr19:54722708-54722735	chr19:54722674-54722675;chr19:54722707-54722708		91.04	100.00	89.86	83.58	92.86	88.03	95.00	96.44	96.36	94.29	88.46	93.51	100.00	95.34	93.75	96.08	100.00	95.12	87.10	92.21	92.55	92.96	86.27	88.54	100.00	92.93	90.06	92.03	92.86	92.92	90.68	92.05	NA	88.46	100.00	87.57	100.00	92.57	-7.43	0.272458	0.663989
N	jcn_only_AA	OPTN	chr10	+	chr10:13164488-13169744;chr10:13164488-13165994;chr10:13164488-13166045	chr10:13164488-13164863					0.00	NA	1.85	3.85	0.00	9.21	4.65	0.94	2.24	2.41	2.38	3.82	0.00	2.37	1.85	0.00	0.00	2.65	0.00	0.52	7.35	0.00	0.00	0.00	0.00	0.82	0.00	1.04	0.00	1.63	1.46	0.00	0.00	1.55	0.00	0.51	0.00	0.88	0.88	0.932226	0.977987
N	alternative_donor	HPS1	chr10	-	chr10:100187022-100189329	chr10:100187022-100189215		chr10:100189216-100189329	chr10:100189329-100189330		12.24	16.67	7.02	44.44	13.04	43.75	6.15	8.57	7.41	14.81	6.67	8.57	4.40	4.35	6.90	16.98	8.64	5.41	26.09	7.69	33.33	20.00	11.11	13.11	12.50	18.42	6.15	18.92	8.33	17.95	23.91	13.64	52.00	15.19	10.89	11.11	14.59	10.41	-4.18	0.395000	0.658590
N	alternative_acceptor	DEF6	chr6	+	chr6:35280550-35285667	chr6:35280550-35281876		chr6:35281877-35285667	chr6:35285667-35285668		22.22	16.39	40.48	NA	14.81	NA	2.50	10.00	NA	NA	6.67	NA	6.82	0.00	NA	NA	6.82	NA	15.62	18.52	11.11	NA	34.38	36.36	17.65	16.67	33.33	NA	29.63	NA	NA	17.65	13.33	35.71	38.71	25.00	14.47	16.67	2.20	0.766210	0.913895
N	jcn_only_AD	IGFLR1	chr19	-	chr19:36232125-36233290;chr19:36232125-36233167;chr19:36232125-36232383	chr19:36232125-36233296		chr19:36232384-36233167;chr19:36233168-36233290;chr19:36233291-36233296	chr19:36233167-36233168;chr19:36233290-36233291;chr19:36233296-36233297		87.76	94.93	90.16	91.49	86.05	87.04	90.91	87.50	87.50	97.06	92.45	81.82	88.51	90.00	88.24	90.91	91.04	100.00	92.16	91.84	95.12	92.31	93.26	91.89	93.18	100.00	86.67	93.88	92.91	87.84	97.14	87.74	90.78	92.31	92.31	92.47	91.53	90.92	-0.61	0.791290	0.902717
N	jcn_only_AA		chr6	+	chr6:146865258-146870604	chr6:146865258-146870599		chr6:146870600-146870604	chr6:146870604-146870605		100.00	97.69	100.00	100.00	98.55	100.00	98.60	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.81	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.77	100.00	100.00	100.00	98.13	100.00	100.00	98.33	98.72	100.00	98.81	100.00	98.66	100.00	1.34	0.155802	0.663989
K	cassette	ATP5J	chr21	-	chr21:27102113-27107163	chr21:27102113-27106643;chr21:27106687-27107163		chr21:27106644-27106686			0.00	1.83	0.68	1.59	0.69	0.00	1.24	1.85	2.99	2.67	3.93	0.79	3.70	5.88	0.00	3.48	6.21	5.13	1.10	0.89	0.00	0.00	1.14	1.27	0.00	0.00	0.94	0.00	1.99	0.00	0.94	2.52	2.38	1.92	4.76	3.12	1.54	0.92	-0.62	0.914608	0.977048
N	jcn_only_AA		chr11	+	chr11:67051421-67051744;chr11:67051421-67051747;chr11:67051421-67051735	chr11:67051421-67051681		chr11:67051682-67051735;chr11:67051736-67051744;chr11:67051745-67051747	chr11:67051735-67051736;chr11:67051744-67051745;chr11:67051747-67051748		92.31	96.69	96.07	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.95	100.00	100.00	100.00	99.32	NA	97.87	94.19	100.00	100.00	97.09	94.74	100.00	98.28	95.83	100.00	98.77	100.00	100.00	95.49	93.65	100.00	98.44	100.00	98.41	99.14	0.73	0.820668	0.927675
K	alternative_acceptor	IPO9	chr1	+	chr1:201844357-201845132	chr1:201844357-201845071		chr1:201845072-201845132	chr1:201845132-201845133		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.12	100.00	NA	96.67	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709013
K	intron_retention		chr7	+	chr7:99751141-99751489				chr7:99751140-99751141;chr7:99751489-99751490		4.12	6.17	10.11	1.56	2.59	1.79	0.62	1.11	1.03	0.00	0.31	0.00	0.62	0.00	1.28	0.00	0.00	0.00	4.36	8.16	3.34	3.12	4.07	1.35	4.09	10.91	7.80	1.52	1.77	0.86	12.24	13.95	5.00	1.82	3.76	2.05	4.22	6.14	1.92	0.418750	1.000000
K	alternative_first_exon	FKBP2	chr11	+	chr11:64008007-64009855,chr11:64009134-64009855,chr11:64008187-64009855,chr11:64009220-64009855,chr11:64009007-64009855,chr11:64009116-64009855,chr11:64009467-64009855;chr11:64008605-64009855;chr11:64009686-64009855	chr11:64008711-64009855	chr11:64008476-64008604;chr11:64009220-64009685	chr11:64008628-64008710			4.55	8.97	2.70	4.55	3.95	4.76	4.55	0.00	13.04	2.33	3.77	2.63	6.98	5.56	4.35	7.14	4.92	4.26	4.51	3.33	5.10	6.67	3.41	6.67	0.00	8.33	11.11	2.38	1.56	5.45	0.00	2.78	3.48	4.55	0.00	5.41	4.53	3.94	-0.59	0.553635	0.676693
N	alternative_acceptor	BCKDK	chr16	+	chr16:31123349-31123441;chr16:31123349-31123517	chr16:31123349-31123502		chr16:31123442-31123502;chr16:31123503-31123517	chr16:31123502-31123503;chr16:31123517-31123518		0.00	1.25	0.00	0.00	1.30	0.00	0.00	0.00	0.00	2.13	0.00	5.26	0.00	0.00	0.00	0.00	1.54	7.69	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	5.13	0.00	0.00	0.00	0.176149	0.660713
K	intron_retention	NCAPH2	chr22	+	chr22:50959466-50959971				chr22:50959465-50959466;chr22:50959971-50959972		0.00	3.70	3.23	0.00	4.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	3.70	6.67	5.88	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.959051	1.000000
K	intron_retention		chr17	+	chr17:61908786-61908865				chr17:61908785-61908786;chr17:61908865-61908866		2.99	2.97	1.74	2.36	2.70	4.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	4.17	2.88	3.85	2.94	5.00	4.11	3.70	3.29	0.00	2.13	1.49	10.67	5.81	3.33	3.19	2.73	1.75	2.77	3.35	0.58	0.787563	1.000000
N	jcn_only_AD	HSCB	chr22	+	chr22:29138320-29139869;chr22:29138369-29139869;chr22:29138717-29139869;chr22:29138926-29139869	chr22:29138521-29139869		chr22:29138320-29138368;chr22:29138369-29138520;chr22:29138521-29138716;chr22:29138717-29138925	chr22:29138319-29138320;chr22:29138368-29138369;chr22:29138520-29138521;chr22:29138716-29138717		5.56	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	CLTC	chr17	+	chr17:57768073-57771088	chr17:57768675-57771088		chr17:57768073-57768674	chr17:57768072-57768073		0.00	5.45	0.00	0.00	0.98	0.00	0.32	0.00	2.75	0.00	0.43	0.00	0.34	0.89	0.00	0.60	1.16	0.64	0.00	1.37	0.00	0.00	0.66	0.00	0.00	0.00	0.00	1.00	0.96	0.00	0.00	0.00	3.03	0.00	0.00	0.44	0.33	0.00	-0.33	0.274343	0.657607
K	jcn_only_AD	RPS3	chr11	+	chr11:75112750-75113423	chr11:75112770-75113423		chr11:75112750-75112769	chr11:75112749-75112750		30.77	30.68	37.50	49.09	44.25	52.24	39.24	25.00	33.33	50.00	52.05	55.56	34.78	36.36	33.33	43.08	44.62	60.00	33.93	33.33	40.00	42.50	48.44	33.33	27.59	NA	31.25	42.22	43.48	44.44	22.22	42.11	31.58	50.00	45.83	46.38	32.75	30.77	-1.98	0.302659	0.657607
N	jcn_only_AA		chr7	+	chr7:100465856-100466363	chr7:100465856-100466116		chr7:100466117-100466363	chr7:100466363-100466364		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	95.45	100.00	100.00	100.00	91.43	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	TAPBPL	chr12	+	chr12:6568114-6570020				chr12:6568113-6568114;chr12:6570020-6570021		6.98	0.00	2.17	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.98	1.92	1.61	0.00	1.69	2.08	1.11	2.70	3.57	0.00	0.00	1.43	3.57	1.19	0.00	2.50	3.12	1.39	0.49	2.31	1.82	0.435298	1.000000
K	intron_retention	SERPINB6	chr6	-	chr6:2959577-2971350				chr6:2959576-2959577;chr6:2971350-2971351		15.79	18.18	12.00	NA	12.50	NA	0.00	0.00	6.25	0.00	4.00	0.00	0.00	0.00	6.90	0.00	5.56	NA	NA	7.69	9.09	NA	13.04	NA	18.75	16.67	12.00	18.18	11.11	NA	NA	21.05	9.09	20.00	9.09	17.65	9.09	7.69	-1.40	0.265933	1.000000
K	intron_retention	GMPPA	chr2	+	chr2:220370085-220370179				chr2:220370084-220370085;chr2:220370179-220370180		2.33	2.63	0.00	5.26	2.50	2.22	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	2.00	0.00	5.13	8.00	5.13	3.12	2.56	4.55	2.44	0.00	4.00	9.09	2.44	0.00	3.03	6.67	3.17	1.17	-2.00	0.897776	1.000000
K	intron_retention	MXD3,RAB24	chr5	-	chr5:176729832-176730009				chr5:176729831-176729832;chr5:176730009-176730010		1.67	0.00	3.59	0.00	2.50	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	1.69	1.80	8.33	6.06	0.00	0.00	1.08	2.84	2.44	0.00	1.49	1.39	0.83	0.00	4.76	3.45	5.26	0.00	1.23	1.23	0.172766	1.000000
K	cassette	APLP2	chr11	+	chr11:129992409-129996594	chr11:129992409-129993506;chr11:129993675-129996594		chr11:129993507-129993674			50.41	60.45	52.67	63.51	58.41	69.57	61.40	52.68	58.56	64.48	63.70	64.25	50.90	40.76	49.49	55.48	53.41	57.12	48.98	44.33	52.48	59.24	61.13	58.16	50.00	52.56	54.60	66.22	62.45	61.41	52.09	54.70	47.33	62.44	57.43	61.99	50.45	51.25	0.80	0.207997	0.709176
K	intron_retention	TBC1D9B	chr5	-	chr5:179305524-179306046				chr5:179305523-179305524;chr5:179306046-179306047		0.00	7.50	3.57	NA	10.00	NA	0.82	0.00	0.00	0.00	1.92	0.00	0.00	0.00	1.82	4.08	1.31	0.00	NA	4.35	NA	0.00	4.65	NA	0.00	0.00	4.00	0.00	5.26	NA	0.00	5.88	NA	3.57	6.25	0.00	0.41	0.00	-0.41	0.574562	1.000000
N	jcn_only_AA	POLK	chr5	+	chr5:169507288-169508932	chr5:169507288-169508845		chr5:169508846-169508932	chr5:169508932-169508933		100.00	100.00	100.00	100.00	100.00	100.00	99.25	100.00	100.00	98.72	96.91	100.00	99.37	100.00	100.00	97.22	97.00	94.94	99.00	100.00	100.00	100.00	98.63	100.00	100.00	100.00	97.73	100.00	98.31	100.00	100.00	100.00	100.00	98.94	98.62	98.67	99.69	100.00	0.31	0.083591	0.663989
N	alternative_acceptor	CDC26	chr9	-	chr9:116035691-116037661	chr9:116035719-116037661		chr9:116035691-116035718	chr9:116035690-116035691		85.71	100.00	81.48	NA	100.00	NA	84.62	100.00	100.00	88.89	100.00	100.00	100.00	100.00	100.00	87.50	78.57	100.00	86.67	76.92	76.47	100.00	75.00	76.92	NA	100.00	100.00	81.82	85.71	100.00	84.00	82.14	72.73	78.57	78.57	86.36	86.67	92.85	6.18	0.736983	0.902878
K	jcn_only_AA	MRPL9	chr1	-	chr1:151732508-151733291	chr1:151732658-151733291		chr1:151732508-151732657	chr1:151732507-151732508		100.00	100.00	92.31	NA	93.94	81.82	94.87	100.00	100.00	100.00	96.43	100.00	93.10	100.00	100.00	89.74	100.00	100.00	100.00	100.00	94.74	100.00	94.12	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	92.31	96.43	88.89	100.00	100.00	0.00	0.180416	0.663989
K	jcn_only_AD	METTL23	chr17	+	chr17:74729460-74729602	chr17:74729464-74729602		chr17:74729460-74729463	chr17:74729459-74729460		0.00	2.00	4.26	4.00	6.78	5.26	0.00	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	NA	0.00	7.14	0.00	0.00	3.23	0.00	0.00	0.00	4.35	0.00	2.08	0.00	5.00	5.56	1.54	0.00	0.00	11.76	0.00	0.00	0.00	0.334488	0.657607
N	jcn_only_AA	MAP3K11	chr11	-	chr11:65373553-65374740	chr11:65374276-65374740					100.00	100.00	98.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.94	92.50	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	MXD3,RAB24	chr5	-	chr5:176730079-176730172				chr5:176730078-176730079;chr5:176730172-176730173		2.90	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.08	2.75	0.00	0.00	0.00	0.00	0.00	2.68	2.50	0.00	3.08	6.67	3.03	2.08	0.00	0.00	2.63	0.00	1.04	1.04	0.430103	1.000000
N	alternative_donor	PSTPIP1	chr15	+	chr15:77324736-77325202;chr15:77324741-77325202	chr15:77324770-77325202		chr15:77324736-77324740;chr15:77324741-77324769	chr15:77324735-77324736;chr15:77324740-77324741		14.29	10.62	15.79	6.25	10.20	4.76	1.75	NA	0.00	0.00	2.44	NA	3.57	NA	0.00	NA	0.00	NA	4.86	21.43	5.19	NA	14.29	NA	11.40	7.69	13.04	NA	13.89	NA	7.69	10.53	7.03	5.26	12.90	0.00	5.95	10.99	5.04	0.154966	0.563271
K	intron_retention	TIMM10	chr11	-	chr11:57297708-57298130				chr11:57297707-57297708;chr11:57298130-57298131		25.00	0.00	0.00	0.00	0.00	8.00	1.56	NA	NA	1.75	2.30	2.17	0.00	NA	14.29	1.28	1.54	0.00	0.00	52.38	12.12	3.12	0.00	17.39	0.00	63.16	4.76	0.00	0.00	3.12	50.00	23.81	0.00	0.00	0.00	8.70	0.00	51.19	51.19	0.032343	1.000000
N	cassette	CRTC2	chr1	-	chr1:153921861-153925280;chr1:153921861-153924493	chr1:153921861-153923735;chr1:153924143-153924493,chr1:153924143-153925280		chr1:153923736-153924142			96.49	100.00	98.48	100.00	90.70	NA	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	98.91	100.00	98.61	100.00	100.00	97.12	100.00	97.30	96.05	97.06	100.00	100.00	97.42	100.00	97.67	96.67	95.24	98.32	100.00	100.00	96.88	100.00	100.00	98.56	-1.44	0.084956	0.641134
N	alternative_acceptor	FBXW5	chr9	-	chr9:139835564-139835702	chr9:139835624-139835702		chr9:139835564-139835623	chr9:139835563-139835564		100.00	100.00	100.00	100.00	100.00	96.67	94.05	95.45	100.00	96.20	100.00	91.89	97.59	96.83	100.00	95.59	95.29	94.59	96.67	100.00	96.40	97.83	98.63	97.22	100.00	96.00	97.37	100.00	98.61	96.67	97.50	98.13	97.26	100.00	100.00	97.06	97.43	97.16	-0.26	0.977624	0.994346
K	intron_retention		chr6	+	chr6:4061382-4061888				chr6:4061381-4061382;chr6:4061888-4061889		34.78	21.74	45.71	53.85	46.67	44.00	100.00	85.71	80.77	100.00	88.24	91.67	100.00	86.36	85.29	96.88	88.24	NA	45.83	45.00	50.00	75.00	50.00	73.33	33.33	38.10	32.56	78.26	75.86	61.29	54.55	34.48	40.00	54.17	53.57	57.14	42.91	49.77	6.86	0.701624	1.000000
N	cassette	GPN1	chr2	+	chr2:27862993-27865295	chr2:27862993-27864106;chr2:27864147-27865295		chr2:27864107-27864146			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.24	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	AES	chr19	-	chr19:3055939-3056309;chr19:3055725-3056309	chr19:3053457-3056309		chr19:3053457-3055724;chr19:3055725-3055938	chr19:3053456-3053457;chr19:3055724-3055725		5.76	5.59	0.00	0.00	7.87	8.04	0.00	4.08	7.63	0.00	3.12	4.82	3.57	7.65	3.85	4.11	0.00	5.00	9.15	7.61	9.42	0.00	7.58	0.00	11.25	4.22	7.32	0.00	0.00	7.32	8.51	7.02	9.32	0.00	10.14	3.85	7.37	6.69	-0.68	0.928846	0.978996
K	alternative_donor	C7orf49	chr7	-	chr7:134852560-134853720;chr7:134852560-134853537;chr7:134852560-134853500	chr7:134852560-134853682		chr7:134853501-134853537;chr7:134853538-134853682;chr7:134853683-134853720	chr7:134853537-134853538;chr7:134853682-134853683;chr7:134853720-134853721		2.86	3.45	0.00	0.00	0.00	10.14	0.00	0.00	2.33	5.00	0.00	5.00	0.00	0.00	3.23	0.00	0.00	0.00	5.26	3.12	0.00	NA	0.00	4.35	9.68	2.86	0.00	0.00	0.00	5.41	2.13	2.22	3.85	3.45	0.00	1.67	3.65	2.50	-1.16	0.279580	0.648887
K	intron_retention	ANKRD13D	chr11	+	chr11:67066596-67067000				chr11:67066595-67066596;chr11:67067000-67067001		13.33	12.50	15.13	NA	15.79	NA	0.00	0.00	0.00	NA	5.88	NA	4.35	0.00	0.00	NA	3.77	NA	12.28	8.89	6.52	NA	15.38	0.00	18.18	10.00	14.29	NA	17.02	NA	13.04	13.25	13.22	5.88	12.70	4.35	12.39	9.45	-2.95	0.720206	1.000000
N	alternative_donor	SIPA1	chr11	+	chr11:65412298-65412425;chr11:65410075-65412425	chr11:65410111-65412425		chr11:65410075-65410110;chr11:65410111-65412297	chr11:65410074-65410075;chr11:65410110-65410111		100.00	93.94	97.96	NA	NA	NA	93.18	100.00	93.94	NA	100.00	NA	100.00	95.65	100.00	100.00	100.00	NA	NA	96.00	100.00	NA	94.44	NA	95.24	96.30	100.00	NA	100.00	NA	100.00	97.22	91.67	NA	92.86	100.00	93.94	98.15	4.21	0.100497	0.504121
K	cassette	TP53I3	chr2	-	chr2:24300632-24303688	chr2:24300632-24302313;chr2:24302511-24303688		chr2:24302314-24302510			84.62	72.22	82.35	66.67	77.08	74.07	88.24	100.00	81.25	89.29	80.49	90.91	80.65	100.00	80.95	84.62	80.95	NA	56.90	87.50	83.05	85.71	77.14	68.75	51.61	90.00	68.75	90.00	86.79	88.00	68.75	54.17	57.14	83.33	83.33	75.86	64.68	88.75	24.07	0.023655	0.405319
K	alternative_acceptor	ING4	chr12	-	chr12:6761934-6762101	chr12:6761937-6762101		chr12:6761934-6761936	chr12:6761933-6761934		27.78	35.29	46.15	NA	30.00	NA	20.83	25.00	21.74	NA	23.08	NA	20.83	23.08	26.09	NA	31.25	NA	35.71	41.67	23.08	NA	23.08	NA	20.00	31.82	26.92	NA	30.00	NA	31.25	34.62	40.00	NA	33.33	NA	28.06	29.52	1.46	0.780672	0.917646
K	alternative_last_exon	ZNF3	chr7	-	chr7:99662536-99672757	chr7:99669836-99672757	chr7:99661656-99662535	chr7:99667595-99669835			63.64	56.67	59.38	60.00	50.00	66.67	62.50	66.67	53.85	61.90	67.86	80.00	64.00	60.00	51.85	67.86	66.67	70.59	52.00	55.00	50.00	61.11	56.76	68.18	54.84	63.16	54.84	60.00	55.56	65.00	60.00	56.76	51.61	57.69	58.62	58.33	55.76	61.58	5.82	0.130613	0.341377
N	cassette	EDC4	chr16	+	chr16:67916910-67917470	chr16:67916910-67917017;chr16:67917081-67917470		chr16:67917018-67917080			100.00	93.94	96.43	92.31	95.83	100.00	100.00	NA	100.00	100.00	100.00	NA	93.75	100.00	100.00	100.00	100.00	NA	100.00	88.24	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	94.29	92.31	100.00	100.00	100.00	96.97	100.00	3.03	0.926534	0.982136
K	intron_retention	RP11-296A16.1,SERINC4	chr15	-	chr15:44087740-44087885				chr15:44087739-44087740;chr15:44087885-44087886		90.91	100.00	100.00	92.86	92.00	NA	NA	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	93.75	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	94.44	91.67	100.00	90.91	100.00	100.00	100.00	100.00	100.00	96.88	-3.12	0.354729	1.000000
K	cassette	TMED5	chr1	-	chr1:93622041-93625685	chr1:93622041-93624371;chr1:93624443-93625685		chr1:93624372-93624442			1.74	0.00	3.20	0.00	3.70	18.18	3.50	4.03	4.29	3.33	3.77	2.53	3.39	2.11	4.23	2.56	4.43	3.76	0.00	2.88	11.54	3.08	4.00	2.08	0.00	2.61	2.41	2.70	0.00	5.41	4.49	1.90	6.67	1.94	3.19	2.11	1.70	2.75	1.05	0.571433	0.830407
K	intron_retention		chr17	-	chr17:7495918-7496011				chr17:7495917-7495918;chr17:7496011-7496012		3.12	0.00	2.17	NA	0.00	NA	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	0.00	6.25	0.00	5.88	0.00	0.00	NA	0.00	2.13	0.00	0.00	0.00	10.26	5.33	0.00	4.35	0.00	11.11	0.00	1.56	1.56	0.261025	1.000000
K	intron_retention		chr20	-	chr20:2640440-2640675				chr20:2640439-2640440;chr20:2640675-2640676		8.82	13.89	19.57	6.25	9.52	7.89	0.00	0.00	0.00	0.00	5.41	0.00	1.64	0.00	0.00	0.00	1.96	0.00	8.97	11.76	8.47	11.54	8.75	21.43	0.00	10.00	7.89	9.38	8.14	11.11	12.50	19.57	8.05	14.29	8.11	17.02	4.85	9.41	4.56	0.809004	1.000000
K	coord_cassette	ANXA2	chr15	-	chr15:60678286-60690141	chr15:60678286-60688349;chr15:60688627-60689456;chr15:60689538-60690141		chr15:60688350-60688626;chr15:60689457-60689537			0.96	1.17	0.44	14.78	5.38	32.43	1.31	1.35	0.99	3.77	1.49	2.73	1.01	1.84	1.11	5.23	1.26	2.61	2.56	0.90	2.37	7.06	2.57	6.02	0.00	0.67	0.68	8.97	4.23	8.03	0.89	0.84	2.63	2.92	1.94	2.31	1.24	0.93	-0.31	0.463668	0.692112
N	alternative_donor	PVRL2	chr19	+	chr19:45377736-45385467;chr19:45381677-45385467	chr19:45383359-45385467		chr19:45377736-45381676;chr19:45381677-45383358	chr19:45377735-45377736;chr19:45381676-45381677		17.76	37.21	14.07	68.29	57.14	88.94	15.91	27.07	24.74	16.96	15.38	17.08	16.67	27.61	21.40	27.69	13.51	15.73	83.33	15.84	52.07	25.58	26.09	28.16	NA	21.25	18.32	36.07	36.59	52.17	23.47	18.01	75.00	23.81	20.45	24.23	37.21	22.36	-14.85	0.176323	0.563271
K	intron_retention		chr6	-	chr6:41126519-41126610				chr6:41126518-41126519;chr6:41126610-41126611		2.63	2.60	3.70	1.05	5.67	0.58	1.43	0.00	0.00	1.28	3.06	0.79	2.65	0.00	0.00	2.57	3.54	0.79	2.73	0.00	2.24	1.49	4.40	0.00	1.95	0.00	2.22	0.72	4.42	1.09	0.00	0.00	3.11	2.87	3.91	0.96	2.62	0.00	-2.62	0.054105	1.000000
K	alternative_acceptor	GBA2	chr9	-	chr9:35737445-35737744	chr9:35737602-35737744		chr9:35737445-35737601	chr9:35737444-35737445		43.33	22.22	50.00	15.38	19.44	NA	6.67	12.50	0.00	NA	23.53	NA	21.43	0.00	12.50	5.26	15.00	NA	20.00	27.78	19.23	17.65	26.67	37.50	36.84	38.89	32.00	28.57	22.73	21.43	41.67	37.04	23.81	26.92	23.33	31.82	21.82	33.34	11.51	0.520277	0.805744
N	jcn_only_AD		chr3	-	chr3:129286649-129288689	chr3:129286649-129288685		chr3:129288686-129288689	chr3:129288689-129288690		100.00	100.00	99.10	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.37	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	98.18	98.28	97.22	99.09	100.00	100.00	94.12	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.345094	0.657607
N	alternative_donor	PRKCSH	chr19	+	chr19:11558434-11558507;chr19:11558413-11558507	chr19:11558323-11558507		chr19:11558323-11558412;chr19:11558413-11558433	chr19:11558322-11558323;chr19:11558412-11558413		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	0.00	0.00	0.00	NA	6.67	NA	20.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	ACP1	chr2	+	chr2:272151-276979;chr2:272306-276979	chr2:272306-275139,chr2:272151-275139;chr2:275202-276979		chr2:275140-275201			100.00	96.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	98.31	100.00	100.00	100.00	100.00	100.00	98.70	100.00	100.00	100.00	88.89	93.75	100.00	100.00	96.43	NA	NA	93.55	100.00	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.536457	0.809056
N	jcn_only_AD	TMEM87A	chr15	-	chr15:42503948-42510000	chr15:42503948-42505330		chr15:42505331-42510000	chr15:42510000-42510001		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	1.49	0.00	2.56	1.82	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.363217	0.657607
N	alternative_acceptor	ARL2BP	chr16	+	chr16:57284420-57286077;chr16:57284420-57289806	chr16:57284420-57286153		chr16:57286078-57286153;chr16:57286154-57289806	chr16:57286153-57286154;chr16:57289806-57289807		6.67	15.79	2.38	15.38	9.52	23.08	0.00	0.00	0.00	3.03	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	28.57	0.00	10.71	4.55	3.23	5.26	NA	0.00	0.00	5.88	3.85	5.88	8.33	0.00	43.75	0.00	0.00	0.00	15.79	0.00	-15.79	0.148563	0.651394
K	intron_retention	VPS18	chr15	+	chr15:41193213-41194813				chr15:41193212-41193213;chr15:41194813-41194814		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	7.69	NA	3.23	0.00	0.00	0.00	0.00	0.00	0.00	5.00	3.03	0.00	3.57	0.00	0.00	0.00	0.601311	1.000000
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299154-23299258;chr14:23299158-23299258	chr14:23299150-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		74.51	69.81	77.36	85.19	80.56	74.19	88.89	NA	90.48	85.71	90.32	70.59	88.89	94.12	86.36	87.80	87.30	71.43	65.28	67.50	68.48	81.25	63.64	64.29	70.59	42.86	60.78	70.00	75.00	69.23	71.43	80.00	65.00	66.67	73.08	71.43	70.20	71.43	1.23	0.636498	0.818639
K	intron_retention		chr22	+	chr22:40805530-40805685				chr22:40805529-40805530;chr22:40805685-40805686		11.11	8.50	10.81	12.50	16.00	19.44	0.00	NA	7.69	8.33	7.41	NA	5.13	9.09	6.67	0.00	9.52	NA	12.40	12.00	12.86	13.33	19.57	6.25	9.66	27.27	13.33	13.33	15.56	13.64	15.79	14.63	12.10	9.52	10.53	17.86	9.08	12.00	2.92	0.850075	1.000000
K	cassette	RCE1	chr11	+	chr11:66612709-66613330	chr11:66612709-66612970;chr11:66613034-66613330		chr11:66612971-66613033			93.75	70.83	60.71	64.29	72.00	NA	85.00	78.57	82.14	81.82	87.88	94.12	93.33	75.00	91.67	94.12	100.00	NA	66.67	78.57	81.25	78.95	66.67	85.71	NA	72.73	84.21	73.33	80.00	71.43	72.22	80.77	81.82	81.82	78.95	78.26	81.82	76.78	-5.03	0.860991	0.951512
N	jcn_only_AA	ACP2	chr11	-	chr11:47261801-47264273;chr11:47261718-47264273;chr11:47261435-47264273;chr11:47263622-47264273	chr11:47261750-47264273		chr11:47261435-47261717;chr11:47261718-47261749;chr11:47261750-47261800;chr11:47261801-47263621	chr11:47261434-47261435;chr11:47261717-47261718;chr11:47261749-47261750;chr11:47261800-47261801		2.75	0.00	1.57	4.00	4.17	5.71	1.23	1.75	2.41	3.08	0.00	0.00	4.17	2.90	2.57	2.99	3.83	0.00	0.00	2.56	1.57	0.00	2.65	0.00	0.00	1.44	1.53	0.00	0.00	0.00	0.00	1.70	2.94	2.50	4.95	2.40	0.61	2.16	1.54	0.566974	0.794977
K	intron_retention	GAK	chr4	-	chr4:890338-891820				chr4:890337-890338;chr4:891820-891821		2.78	0.00	6.45	NA	NA	NA	0.00	1.35	0.00	0.00	0.00	0.00	1.67	1.64	1.54	0.00	1.41	0.00	NA	2.56	9.09	0.00	1.92	2.56	31.25	1.82	2.78	0.00	0.00	0.00	5.00	3.92	8.33	9.68	6.25	9.23	1.67	2.19	0.52	0.839339	1.000000
N	alternative_acceptor	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407084-4407386;chr11:4407110-4407386;chr11:4406413-4407386	chr11:4407141-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		0.78	0.00	0.00	2.04	1.61	1.75	0.00	1.76	0.00	1.47	0.00	0.00	0.00	0.56	0.68	0.00	0.00	0.00	6.25	0.00	0.00	0.00	4.17	0.00	4.17	0.58	0.00	0.83	0.00	0.90	0.79	0.00	2.70	0.00	0.00	0.46	1.35	0.68	-0.67	0.244605	0.699506
N	cassette	NDFIP1	chr5	+	chr5:141515383-141520127	chr5:141515383-141517298;chr5:141517424-141520127		chr5:141517299-141517423			100.00	100.00	100.00	95.16	100.00	97.70	100.00	99.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.31	98.50	100.00	97.98	100.00	100.00	100.00	98.35	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	100.00	100.00	97.27	100.00	100.00	100.00	100.00	0.00	0.705925	0.894258
K	intron_retention	OAZ2	chr15	-	chr15:64983791-64995227				chr15:64983790-64983791;chr15:64995227-64995228		1.67	5.00	0.85	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.54	0.00	0.00	0.00	0.00	0.00	0.00	1.08	3.57	1.06	1.25	0.00	1.05	0.00	5.36	0.62	0.90	0.00	1.35	0.00	2.74	0.80	3.12	2.94	0.00	1.10	3.34	0.84	-2.50	0.883756	1.000000
K	alternative_last_exon	AC002398.9,TRIP10	chr19	+	chr19:36237425-36243076	chr19:36237425-36237608	chr19:36243077-36243152	chr19:36237609-36238420			96.67	95.95	96.00	100.00	98.00	100.00	100.00	100.00	100.00	100.00	100.00	97.62	100.00	97.06	100.00	100.00	100.00	100.00	98.61	96.08	98.95	96.55	94.12	96.43	91.11	97.96	96.36	100.00	100.00	98.21	95.45	96.15	94.92	97.73	97.73	98.25	97.28	96.87	-0.41	0.787354	0.874315
K	intron_retention	PILRA	chr7	+	chr7:99972057-99987510				chr7:99972056-99972057;chr7:99987510-99987511		0.00	1.67	0.00	0.00	0.91	1.61	0.41	0.42	0.62	1.47	1.20	0.98	0.00	0.38	0.42	1.40	0.00	1.61	0.00	0.67	0.00	0.00	0.00	1.16	17.50	0.48	0.24	1.09	0.61	0.75	0.32	0.58	0.00	0.81	0.00	0.80	0.20	0.40	0.20	0.612900	1.000000
N	cassette	TRIP4	chr15	+	chr15:64717831-64747195	chr15:64717831-64737204;chr15:64737308-64747195		chr15:64737205-64737307			100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.80	100.00	100.00	100.00	100.00	100.00	97.92	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.96	97.06	100.00	100.00	100.00	100.00	95.83	100.00	95.00	100.00	98.18	100.00	99.48	-0.52	0.093833	0.658231
K	alternative_first_exon	FKBP2	chr11	+	chr11:64008007-64009855,chr11:64009134-64009855,chr11:64008187-64009855,chr11:64009220-64009855,chr11:64009007-64009855,chr11:64009116-64009855,chr11:64009467-64009855;chr11:64008605-64009855;chr11:64008711-64009855	chr11:64009686-64009855	chr11:64008476-64008604;chr11:64008628-64008710	chr11:64009220-64009685			18.18	19.23	10.81	13.64	18.42	7.14	13.64	5.56	13.04	11.63	11.32	5.26	16.28	5.56	13.04	11.90	11.48	6.38	12.03	10.00	16.33	16.67	17.05	13.33	28.77	8.33	14.81	19.05	21.88	10.91	10.81	13.89	12.17	22.73	24.14	18.92	14.96	9.16	-5.80	0.050072	0.173627
K	cassette	PARP6	chr15	-	chr15:72535041-72542360	chr15:72535041-72541585;chr15:72541656-72542360		chr15:72541586-72541655			11.48	9.23	17.33	10.34	8.33	23.53	25.00	9.52	11.11	26.67	38.89	29.41	33.33	5.26	9.09	35.29	27.27	23.08	4.55	7.14	8.33	10.00	11.29	13.95	NA	9.09	11.11	8.33	8.70	11.11	9.43	8.45	6.25	12.77	7.55	18.75	9.23	9.26	0.03	0.288644	0.709176
K	cassette	NSMCE2	chr8	+	chr8:126163520-126194344	chr8:126163520-126168241;chr8:126168341-126194344		chr8:126168242-126168340			4.00	0.00	0.00	NA	0.00	NA	9.52	10.53	11.76	5.88	2.86	5.56	0.00	6.25	11.76	8.57	0.00	7.14	0.00	0.00	6.67	6.67	0.00	0.00	NA	4.76	0.00	0.00	8.70	7.14	0.00	0.00	NA	4.17	0.00	0.00	0.00	4.38	4.38	0.540680	0.812791
K	cassette	GSN	chr9	+	chr9:124030498-124064240	chr9:124030498-124043747;chr9:124043841-124064240		chr9:124043748-124043840			95.45	99.10	95.30	94.44	98.68	NA	97.82	100.00	100.00	97.30	97.70	98.44	98.85	100.00	95.73	99.66	98.32	98.45	100.00	95.92	97.56	97.33	95.99	98.11	93.55	100.00	93.81	97.78	99.03	100.00	93.55	97.26	97.30	96.47	98.48	98.63	98.33	97.96	-0.37	0.853601	0.950337
K	intron_retention	TMEM259	chr19	-	chr19:1011195-1011365				chr19:1011194-1011195;chr19:1011365-1011366		5.10	10.71	6.58	12.50	10.61	9.09	2.25	0.00	2.38	1.11	1.77	1.41	2.63	3.12	5.71	4.49	2.86	1.39	10.71	8.70	10.45	14.29	9.17	5.26	4.55	5.80	10.22	6.33	11.11	11.67	20.90	9.57	13.89	7.69	8.22	6.14	7.63	5.45	-2.18	0.703359	1.000000
N	cassette	SF3A3	chr1	-	chr1:38423936-38433715	chr1:38423936-38425791;chr1:38425848-38433715		chr1:38425792-38425847			100.00	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.83	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	100.00	100.00	97.83	98.88	100.00	100.00	100.00	100.00	100.00	0.00	0.276585	0.709176
N	coord_cassette	PARP6	chr15	-	chr15:72535041-72543547	chr15:72535041-72542360;chr15:72542434-72543185;chr15:72543296-72543547		chr15:72542361-72542433;chr15:72543186-72543295			95.65	100.00	100.00	NA	83.33	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	80.00	100.00	100.00	96.55	100.00	100.00	0.00	0.457319	0.692112
N	jcn_only_AA	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075086-100076416;chr7:100075825-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075083-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		12.73	42.86	20.00	NA	27.27	NA	18.84	22.86	29.51	23.26	12.50	12.82	19.40	11.46	20.00	11.11	9.23	8.00	50.00	32.00	13.04	30.00	18.75	27.27	NA	16.36	11.90	11.11	17.65	0.00	27.78	21.43	40.00	11.11	12.12	7.50	40.00	19.61	-20.39	0.105630	0.663989
N	jcn_only_AA	LSM10	chr1	-	chr1:36859665-36863367	chr1:36859755-36863367		chr1:36859665-36859754	chr1:36859664-36859665		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.77	100.00	98.46	100.00	100.00	100.00	96.08	100.00	100.00	81.25	96.23	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.240371	0.663989
N	cassette	CCT6A	chr7	+	chr7:56128634-56130375	chr7:56128634-56129439;chr7:56129543-56130375		chr7:56129440-56129542			84.44	87.06	88.73	92.00	91.36	83.87	97.75	100.00	96.30	97.41	97.58	100.00	100.00	94.29	95.65	95.78	98.39	100.00	92.16	80.00	91.18	90.00	89.26	82.54	100.00	75.00	87.50	94.94	95.00	84.21	65.62	75.93	80.95	87.64	91.23	84.85	94.95	82.22	-12.73	0.143350	0.709176
N	jcn_only_AA		chr9	+	chr9:140157675-140166532	chr9:140157675-140158696					100.00	100.00	100.00	100.00	96.88	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	jcn_only_AA	AURKAIP1	chr1	-	chr1:1309738-1310084;chr1:1309971-1310084;chr1:1309742-1310084	chr1:1309826-1310084		chr1:1309738-1309741;chr1:1309742-1309825;chr1:1309826-1309970	chr1:1309737-1309738;chr1:1309741-1309742;chr1:1309825-1309826		100.00	100.00	100.00	100.00	99.09	96.10	90.91	97.22	94.00	93.88	92.65	92.86	98.20	100.00	98.18	98.97	98.63	100.00	100.00	98.31	98.51	94.44	98.97	100.00	97.60	100.00	100.00	100.00	97.56	93.62	100.00	100.00	100.00	100.00	96.92	97.62	99.10	100.00	0.90	0.370393	0.663989
N	alternative_acceptor	PLXND1	chr3	-	chr3:129286626-129288685;chr3:129286879-129288685	chr3:129286649-129288685		chr3:129286626-129286648;chr3:129286649-129286878	chr3:129286625-129286626;chr3:129286648-129286649		96.67	98.53	95.42	NA	NA	NA	100.00	100.00	98.63	100.00	100.00	100.00	98.84	96.55	98.48	100.00	97.92	100.00	100.00	97.06	100.00	100.00	97.06	100.00	87.50	95.24	96.72	100.00	97.44	NA	NA	93.33	NA	100.00	98.31	100.00	98.84	96.67	-2.17	0.960807	0.990505
K	jcn_only_AA	SNAPC1,SRSF5	chr14	+	chr14:70235969-70237183	chr14:70235969-70236227		chr14:70236228-70237183	chr14:70237183-70237184		3.45	0.00	3.61	0.00	0.00	NA	0.00	0.88	1.98	0.00	0.00	1.09	4.48	2.15	2.20	0.95	0.00	0.00	0.00	0.00	2.17	5.00	3.92	0.00	NA	2.50	1.39	3.92	4.35	1.64	0.00	5.26	0.00	1.45	0.00	3.57	0.00	1.51	1.51	0.591083	0.811418
K	intron_retention	ID3	chr1	-	chr1:23884907-23885425				chr1:23884906-23884907;chr1:23885425-23885426		18.37	3.74	8.77	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.81	0.00	2.83	11.11	7.14	0.00	3.92	NA	0.00	0.00	5.00	0.00	2.89	NA	28.57	11.05	10.66	2.89	4.26	7.89	1.42	5.55	4.14	0.464632	1.000000
K	jcn_only_AA	RSL1D1	chr16	-	chr16:11935675-11935763	chr16:11935678-11935763		chr16:11935675-11935677	chr16:11935674-11935675		100.00	100.00	100.00	91.67	100.00	100.00	98.36	100.00	98.72	96.55	91.03	100.00	100.00	100.00	97.75	97.64	95.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.89	100.00	100.00	100.00	100.00	95.92	NA	100.00	100.00	100.00	98.21	100.00	100.00	100.00	0.00	0.294874	0.663989
N	alternative_acceptor	ANPEP	chr15	-	chr15:90345144-90346469;chr15:90345825-90346469;chr15:90344839-90346469	chr15:90345766-90346469		chr15:90344839-90345143;chr15:90345144-90345765;chr15:90345766-90345824	chr15:90344838-90344839;chr15:90345143-90345144;chr15:90345765-90345766		0.09	0.00	0.19	0.88	0.78	5.00	0.00	0.07	0.00	0.36	0.19	0.29	0.00	0.00	0.00	1.20	0.20	1.23	0.00	0.13	0.53	0.40	0.28	0.84	0.00	0.27	0.10	0.88	1.52	1.28	0.00	0.24	0.00	1.11	0.31	1.15	0.00	0.08	0.08	0.072069	0.585944
N	alternative_acceptor	PLXNB2	chr22	-	chr22:50719403-50719517;chr22:50719414-50719517	chr22:50719296-50719517		chr22:50719296-50719402;chr22:50719403-50719413	chr22:50719295-50719296;chr22:50719402-50719403		2.78	2.65	0.81	NA	0.00	NA	0.00	0.00	0.00	3.51	2.29	0.00	1.68	1.39	1.92	0.00	0.00	3.57	7.14	4.59	0.00	0.00	1.57	0.00	0.00	0.00	1.90	0.00	1.08	0.00	4.35	3.21	0.00	2.15	1.43	3.95	0.84	2.08	1.25	0.850833	0.946659
K	cassette	SH3BP2	chr4	+	chr4:2833407-2834057	chr4:2833407-2833649;chr4:2833706-2834057		chr4:2833650-2833705			86.36	85.23	81.25	94.87	86.79	91.18	97.30	96.15	100.00	95.77	95.96	100.00	98.73	97.83	100.00	97.92	94.32	100.00	85.71	87.18	85.42	85.94	77.59	89.36	100.00	86.00	82.09	85.48	88.16	92.86	75.00	77.50	83.33	82.14	85.48	95.31	91.50	86.77	-4.73	0.449123	0.750082
K	jcn_only_AA	DEF8	chr16	+	chr16:90021675-90023880;chr16:90021675-90023948	chr16:90021675-90023918		chr16:90023881-90023918;chr16:90023919-90023948	chr16:90023918-90023919;chr16:90023948-90023949		93.94	100.00	98.39	94.12	100.00	96.72	100.00	100.00	93.94	95.24	100.00	100.00	98.33	95.12	100.00	100.00	95.83	100.00	100.00	95.00	98.25	97.50	98.51	100.00	100.00	100.00	96.23	100.00	95.35	95.83	100.00	96.00	100.00	100.00	95.95	95.59	100.00	97.56	-2.44	0.105763	0.663989
K	cassette	PCMT1	chr6	+	chr6:150071093-150094273	chr6:150071093-150092297;chr6:150092403-150094273		chr6:150092298-150092402			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.84	100.00	100.00	100.00	100.00	100.00	100.00	98.99	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	99.08	100.00	100.00	0.00	0.373901	0.709176
N	cassette	ZBTB8OS	chr1	-	chr1:33099674-33116002;chr1:33097481-33116029;chr1:33093146-33116002;chr1:33099674-33116033;chr1:33099674-33102842;chr1:33093146-33116029;chr1:33097481-33116033;chr1:33093146-33116033;chr1:33099674-33116029;chr1:33099712-33116033;chr1:33099712-33102842;chr1:33099712-33116002;chr1:33097481-33102842	chr1:33099712-33100368,chr1:33099674-33100368,chr1:33093146-33100368,chr1:33097481-33100368;chr1:33100394-33102842,chr1:33100394-33116002,chr1:33100394-33116033,chr1:33100394-33116029		chr1:33100369-33100393			76.67	81.82	82.98	84.00	85.48	84.38	90.91	77.27	90.00	85.71	94.03	84.21	89.58	95.65	93.62	86.96	86.42	94.44	83.67	86.21	82.76	82.61	87.50	69.23	77.14	89.66	76.09	88.00	77.94	69.05	86.21	80.00	71.05	93.55	94.12	75.61	82.75	86.21	3.46	0.510910	0.791208
K	jcn_only_AA	C17orf49,RNASEK-C17orf49	chr17	+	chr17:6920334-6920579	chr17:6920334-6920575		chr17:6920576-6920579	chr17:6920579-6920580		34.84	19.15	26.81	28.72	25.40	27.71	30.93	31.25	31.58	20.88	25.00	29.27	24.79	29.17	33.16	24.00	29.82	28.77	21.76	29.73	25.53	28.57	27.98	30.84	21.41	28.15	30.93	35.62	33.53	33.15	33.33	26.63	27.93	32.32	30.38	29.94	23.27	30.49	7.22	0.012216	0.486024
N	cassette	NADK	chr1	-	chr1:1684500-1685489;chr1:1684500-1685462;chr1:1684500-1685722	chr1:1684500-1685005;chr1:1685089-1685722,chr1:1685089-1685462,chr1:1685089-1685489		chr1:1685006-1685088			89.09	80.36	90.16	85.00	89.29	97.26	100.00	96.40	97.01	94.44	100.00	100.00	97.12	97.58	96.88	100.00	100.00	100.00	85.25	92.44	85.39	82.61	76.92	100.00	100.00	95.40	82.26	95.35	77.42	95.96	90.37	89.47	79.45	87.80	82.50	92.37	91.19	93.92	2.73	0.478800	0.771126
K	intron_retention	DDX27	chr20	+	chr20:47858744-47859130				chr20:47858743-47858744;chr20:47859130-47859131		8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	3.12	0.00	0.00	0.00	0.594508	1.000000
K	alternative_donor	AKT1S1	chr19	-	chr19:50376560-50380281;chr19:50376560-50379859	chr19:50376560-50380493		chr19:50379860-50380281;chr19:50380282-50380493	chr19:50380281-50380282;chr19:50380493-50380494		0.00	0.00	0.00	0.00	0.00	NA	14.29	7.69	11.11	0.00	9.09	NA	9.52	0.00	5.41	8.33	0.00	NA	NA	7.14	5.26	NA	0.00	0.00	0.00	1.85	0.00	0.00	6.25	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	4.05	4.05	0.788717	0.923946
K	intron_retention	CC2D1A	chr19	+	chr19:14038079-14038705				chr19:14038078-14038079;chr19:14038705-14038706		4.76	6.82	14.29	NA	0.00	NA	0.00	0.00	0.00	NA	6.67	NA	0.00	0.00	7.89	0.00	0.00	NA	0.00	7.14	0.00	NA	4.55	NA	11.76	6.06	6.82	NA	12.50	NA	8.70	7.14	4.76	10.00	10.00	10.00	2.38	5.41	3.03	0.809876	1.000000
N	cassette	COPS6	chr7	+	chr7:99688278-99688660	chr7:99688278-99688524;chr7:99688573-99688660		chr7:99688525-99688572			97.37	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.64	91.89	98.25	100.00	96.67	100.00	92.68	90.91	100.00	100.00	96.49	100.00	86.36	95.83	87.50	100.00	96.15	95.74	97.32	94.63	-2.69	0.664957	0.877602
N	alternative_acceptor	TINF2	chr14	-	chr14:24709362-24709468	chr14:24709387-24709468		chr14:24709362-24709386	chr14:24709361-24709362		83.82	89.19	86.67	80.00	76.79	68.18	87.10	76.47	83.05	76.92	67.50	81.48	78.12	85.11	84.91	76.74	77.78	79.07	80.95	72.31	69.23	75.61	82.00	88.14	62.50	83.67	88.64	82.35	79.55	78.75	80.00	78.00	76.00	86.36	82.05	86.36	79.53	81.84	2.30	0.783392	0.917646
N	jcn_only_AA	EHBP1L1,LDHC	chr11	+	chr11:65351237-65351711	chr11:65351237-65351390		chr11:65351391-65351711	chr11:65351711-65351712		0.00	0.00	2.53	NA	0.00	NA	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	1.67	0.00	0.00	5.26	0.00	7.89	5.17	0.00	4.65	NA	0.00	6.98	0.00	0.00	0.00	0.00	3.85	3.70	0.00	0.00	0.00	0.00	0.00	1.93	1.93	0.091861	0.663989
N	alternative_acceptor	LMF2	chr22	-	chr22:50942330-50942768	chr22:50942334-50942768		chr22:50942330-50942333	chr22:50942329-50942330		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.59	96.77	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	0.00	0.210864	0.671156
N	alternative_acceptor	TREX1	chr3	+	chr3:48507709-48508176;chr3:48507709-48508138;chr3:48507709-48508382;chr3:48507709-48508463	chr3:48507709-48508028		chr3:48508029-48508138;chr3:48508139-48508176;chr3:48508177-48508382;chr3:48508383-48508463	chr3:48508138-48508139;chr3:48508176-48508177;chr3:48508382-48508383;chr3:48508463-48508464		74.19	55.88	58.33	75.00	71.43	56.00	75.00	89.47	88.10	100.00	95.00	88.00	80.00	82.88	90.00	69.44	83.33	68.97	78.57	85.48	77.78	88.24	70.37	77.78	76.19	77.78	NA	82.22	85.00	85.25	89.13	100.00	66.67	61.29	71.43	54.17	75.59	84.18	8.59	0.037017	0.560254
K	alternative_acceptor	IDH3G	chrX	-	chrX:153051429-153051666	chrX:153051465-153051666		chrX:153051429-153051464	chrX:153051428-153051429		4.08	9.38	6.12	12.90	8.21	11.29	2.67	3.03	0.00	3.45	1.22	2.04	2.44	2.63	5.26	6.90	5.19	2.70	6.83	5.00	4.35	15.79	11.11	9.09	8.80	5.13	5.26	5.00	8.64	12.50	7.50	8.33	6.06	8.11	8.77	8.89	6.45	4.54	-1.91	0.325829	0.709013
K	alternative_donor	SMIM12	chr1	-	chr1:35321584-35325252;chr1:35321584-35325055	chr1:35321584-35325277		chr1:35325056-35325252;chr1:35325253-35325277	chr1:35325252-35325253;chr1:35325277-35325278		92.86	92.31	100.00	100.00	92.86	100.00	92.50	97.50	93.33	89.09	92.16	93.18	91.89	92.50	89.80	87.67	88.89	88.57	100.00	94.12	95.65	91.67	92.31	96.15	NA	100.00	100.00	93.55	92.68	93.94	95.65	100.00	100.00	88.89	95.00	90.48	92.50	94.89	2.39	0.966286	0.989418
N	alternative_donor	WDFY2	chr13	+	chr13:52325552-52329493;chr13:52327056-52329493	chr13:52328534-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		6.25	9.09	7.41	NA	NA	NA	3.57	2.56	0.00	NA	0.00	NA	4.00	5.88	4.55	NA	5.88	NA	NA	8.33	0.00	NA	NA	NA	0.00	8.33	6.90	NA	NA	NA	6.67	6.67	NA	10.00	NA	NA	3.79	6.46	2.67	0.347613	0.650093
K	intron_retention		chr12	-	chr12:56992568-56992651				chr12:56992567-56992568;chr12:56992651-56992652		4.08	0.00	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	3.23	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	7.04	5.26	5.71	4.76	0.00	4.76	0.00	2.29	2.29	0.865673	1.000000
N	cassette	ELAVL1	chr19	-	chr19:8028692-8038608	chr19:8028692-8032448;chr19:8032675-8038608		chr19:8032449-8032674			100.00	100.00	95.56	100.00	100.00	100.00	100.00	100.00	98.39	98.72	100.00	100.00	100.00	100.00	100.00	97.10	100.00	100.00	100.00	88.89	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	83.33	100.00	100.00	100.00	100.00	100.00	0.00	0.787839	0.936947
K	cassette	DBNL	chr7	+	chr7:44091542-44096355;chr7:44089880-44096355	chr7:44091542-44092465,chr7:44089880-44092465;chr7:44092551-44096355		chr7:44092466-44092550			97.22	100.00	100.00	NA	100.00	NA	97.70	98.11	100.00	100.00	97.65	97.50	97.17	100.00	97.67	97.22	99.10	97.87	NA	100.00	95.00	93.75	100.00	95.24	100.00	98.08	96.77	100.00	97.44	100.00	95.45	100.00	NA	100.00	100.00	97.50	98.85	98.09	-0.75	0.593838	0.846934
K	jcn_only_AD	CUTA	chr6	-	chr6:33384920-33385027	chr6:33384920-33385023		chr6:33385024-33385027	chr6:33385027-33385028		0.00	0.00	0.00	0.00	0.68	0.00	0.64	0.00	0.00	0.00	0.74	0.00	0.00	0.00	2.38	1.02	0.81	0.00	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.59	0.73	6.67	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.463641	0.716492
K	cassette	ANXA11	chr10	-	chr10:81935912-81965098	chr10:81935912-81940696;chr10:81941212-81965098		chr10:81940697-81941211			4.08	0.00	0.00	NA	3.12	NA	3.93	3.95	3.45	3.66	2.69	2.38	2.10	3.75	1.52	3.29	1.40	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.56	3.57	5.77	3.53	0.00	0.00	0.00	NA	4.17	1.61	0.00	1.05	3.16	2.11	0.497971	0.781431
K	intron_retention	MBD1	chr18	-	chr18:47796189-47797838				chr18:47796188-47796189;chr18:47797838-47797839		90.00	100.00	86.96	NA	73.68	NA	55.56	36.36	60.00	35.00	60.00	30.00	48.00	38.89	44.44	30.43	46.43	25.00	81.82	80.00	93.75	80.00	78.12	59.09	NA	50.00	77.50	58.82	67.74	73.33	78.79	87.76	100.00	74.29	68.57	60.00	81.82	64.40	-17.42	0.745491	1.000000
K	intron_retention	NFKBIB	chr19	+	chr19:39398300-39399370				chr19:39398299-39398300;chr19:39399370-39399371		50.00	36.36	52.38	41.10	41.76	39.16	44.00	46.15	51.72	38.68	48.33	35.71	53.57	63.27	60.56	44.57	49.28	35.79	31.13	38.46	36.18	40.00	41.54	34.88	52.50	59.09	47.76	50.00	46.94	44.86	50.00	45.61	36.80	43.75	55.36	50.48	40.40	50.00	9.60	0.848864	1.000000
K	alternative_acceptor	B3GAT3	chr11	-	chr11:62383713-62383977;chr11:62383709-62383977	chr11:62383272-62383977		chr11:62383272-62383708;chr11:62383709-62383712	chr11:62383271-62383272;chr11:62383708-62383709		90.57	97.04	95.77	97.83	95.06	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.16	84.62	100.00	87.50	87.30	75.00	94.17	90.91	94.38	96.97	92.45	100.00	87.10	88.24	93.41	87.10	92.31	83.87	95.61	90.74	-4.87	0.205176	0.668672
K	intron_retention	SNRPD2	chr19	-	chr19:46190986-46191644				chr19:46190985-46190986;chr19:46191644-46191645		0.98	0.39	0.76	0.00	0.20	0.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	1.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	2.94	1.49	0.00	0.49	0.40	0.20	0.00	-0.20	0.881801	1.000000
N	alternative_acceptor	TUBGCP2	chr10	-	chr10:135107274-135111455	chr10:135109369-135111455		chr10:135107274-135109368	chr10:135107273-135107274		10.81	15.00	17.50	NA	8.33	NA	1.43	4.17	4.00	5.88	4.65	7.14	4.35	6.67	10.00	5.56	4.88	10.00	NA	9.52	NA	10.00	9.09	NA	15.38	14.29	11.36	7.69	10.53	NA	10.00	14.29	NA	13.04	10.00	15.38	9.68	9.76	0.08	0.960674	0.990505
N	alternative_donor	WRAP73	chr1	-	chr1:3548222-3548776	chr1:3548222-3548586		chr1:3548587-3548776	chr1:3548776-3548777		0.00	3.12	3.03	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	3.57	0.00	0.00	NA	10.00	3.33	3.33	0.00	5.26	5.88	0.00	0.00	0.00	0.680022	0.861246
N	alternative_acceptor	FAM195B	chr17	-	chr17:79782267-79782374;chr17:79782292-79782374	chr17:79782282-79782374		chr17:79782267-79782281;chr17:79782282-79782291	chr17:79782266-79782267;chr17:79782281-79782282		100.00	95.77	89.66	90.00	92.65	98.28	100.00	100.00	88.46	95.00	100.00	94.83	100.00	100.00	93.94	95.83	95.35	98.31	93.88	82.14	100.00	92.45	94.12	91.07	93.02	100.00	100.00	89.39	95.38	93.14	95.83	100.00	90.57	86.67	85.71	89.74	94.82	100.00	5.18	0.818117	0.937646
N	alternative_first_exon		chr1	-	chr1:84967654-84970984,chr1:84967654-84970988,chr1:84967654-85028927;chr1:84967654-85028939	chr1:84967654-84971693	chr1:85028940-85029101	chr1:84971694-84972248			84.06	78.89	65.36	88.89	88.51	90.60	92.13	94.83	91.90	96.67	95.93	96.09	96.65	97.18	94.52	98.40	98.36	98.45	79.84	86.78	83.07	92.16	87.40	92.27	81.69	84.41	69.47	97.48	91.63	93.87	78.47	65.93	79.05	90.48	88.11	90.83	80.77	85.59	4.83	0.510723	0.650124
N	alternative_acceptor	PSMA1	chr11	-	chr11:14535440-14535948;chr11:14535432-14535948;chr11:14535452-14535948	chr11:14535434-14535948		chr11:14535432-14535433;chr11:14535434-14535439;chr11:14535440-14535451	chr11:14535431-14535432;chr11:14535433-14535434;chr11:14535439-14535440		93.75	93.33	93.33	88.46	94.12	83.33	100.00	97.85	99.01	100.00	98.48	98.15	98.97	97.83	97.32	98.68	98.63	100.00	100.00	93.10	94.83	93.24	92.86	91.86	NA	91.57	95.79	91.78	95.52	91.67	86.27	89.19	100.00	92.17	92.66	92.25	100.00	93.42	-6.58	0.047310	0.570243
N	jcn_only_AD	FGD2	chr6	+	chr6:36993106-36993567;chr6:36992570-36993567	chr6:36990147-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		94.07	100.00	NA	NA	100.00	NA	97.44	96.17	100.00	100.00	100.00	92.31	98.41	95.56	100.00	100.00	100.00	100.00	NA	90.82	NA	NA	100.00	100.00	100.00	92.91	NA	100.00	100.00	100.00	94.67	100.00	100.00	100.00	94.74	98.29	100.00	94.37	-5.63	0.000566	0.069108
N	cassette	SLC39A13	chr11	+	chr11:47436027-47436610	chr11:47436027-47436327;chr11:47436461-47436610		chr11:47436328-47436460			100.00	94.34	95.52	91.30	100.00	88.89	100.00	100.00	96.97	93.55	95.74	100.00	100.00	100.00	100.00	100.00	97.62	100.00	91.18	96.49	97.92	100.00	100.00	87.50	100.00	100.00	94.59	100.00	100.00	100.00	95.56	95.16	94.74	100.00	94.12	93.75	97.37	100.00	2.63	0.300440	0.709176
N	cassette	FNBP1	chr9	-	chr9:132678260-132687238;chr9:132681522-132687238;chr9:132671279-132687238	chr9:132681522-132686122,chr9:132678260-132686122,chr9:132671279-132686122;chr9:132686306-132687238		chr9:132686123-132686305			59.18	26.32	28.85	33.33	20.00	NA	20.83	70.34	27.59	27.56	12.07	37.93	18.52	77.48	22.41	24.68	11.96	29.14	6.67	55.32	23.53	34.78	20.69	34.55	NA	65.45	29.27	55.00	40.91	53.12	50.00	19.15	9.09	23.91	20.45	31.30	18.52	62.31	43.80	0.000014	0.019864
K	intron_retention	STXBP2	chr19	+	chr19:7712134-7712239				chr19:7712133-7712134;chr19:7712239-7712240		4.23	6.73	8.29	5.88	7.87	6.31	1.63	1.33	0.00	2.27	0.00	0.00	1.27	3.05	4.30	2.44	3.19	0.00	3.54	4.83	4.15	6.67	8.56	11.48	4.24	3.83	6.25	7.89	11.19	6.49	5.51	4.44	3.53	7.89	7.58	6.77	3.54	4.03	0.50	0.963424	1.000000
K	intron_retention	TLN1	chr9	-	chr9:35704780-35707766				chr9:35704779-35704780;chr9:35707766-35707767		82.05	86.36	85.23	NA	NA	NA	87.60	85.61	87.76	80.65	83.78	90.00	90.99	87.76	88.10	73.77	83.45	88.33	NA	66.18	42.11	75.00	66.13	77.14	100.00	86.59	80.72	77.27	73.17	57.14	60.61	59.26	NA	79.17	81.82	81.67	89.29	83.83	-5.46	0.119570	1.000000
N	alternative_acceptor	METTL17	chr14	+	chr14:21464871-21464928;chr14:21464871-21464970	chr14:21464871-21464943		chr14:21464929-21464943;chr14:21464944-21464970	chr14:21464943-21464944;chr14:21464970-21464971		84.62	78.16	69.57	73.68	71.43	80.00	NA	NA	NA	NA	NA	NA	66.67	NA	NA	NA	72.73	NA	73.42	76.92	68.09	NA	67.57	NA	79.49	80.00	72.22	NA	73.33	NA	73.33	72.41	67.47	86.67	63.64	68.75	73.42	78.46	5.04	0.155459	0.660713
K	intron_retention		chr13	+	chr13:50097378-50098220				chr13:50097377-50097378;chr13:50098220-50098221		3.82	12.50	3.17	0.00	6.67	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	0.88	2.20	0.00	0.00	1.19	0.00	2.94	0.00	0.00	2.38	3.97	NA	3.17	4.69	7.69	0.00	2.21	1.56	5.48	NA	7.81	0.00	2.89	0.00	2.25	2.25	0.615181	1.000000
K	alternative_donor	ISYNA1	chr19	-	chr19:18545928-18546075	chr19:18545928-18546057		chr19:18546058-18546075	chr19:18546075-18546076		4.55	0.00	0.00	0.00	9.52	4.17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	10.00	NA	NA	NA	7.14	6.45	2.86	NA	NA	0.00	0.00	2.27	2.27	0.312184	0.650093
K	intron_retention		chr12	-	chr12:49495107-49495254				chr12:49495106-49495107;chr12:49495254-49495255		6.90	0.00	11.11	NA	0.00	NA	0.00	0.00	1.89	NA	0.00	NA	0.00	0.00	3.45	NA	NA	NA	NA	8.00	0.00	NA	7.69	NA	15.38	13.64	5.00	NA	14.29	NA	13.33	14.29	0.00	13.33	23.53	26.67	0.00	7.45	7.45	0.603007	1.000000
N	jcn_only_AD	COA5	chr2	-	chr2:99220655-99224769;chr2:99220655-99224540	chr2:99220655-99224725		chr2:99224541-99224725;chr2:99224726-99224769	chr2:99224725-99224726;chr2:99224769-99224770		0.00	0.00	0.00	NA	0.00	0.00	5.56	0.00	6.67	0.00	4.00	0.00	5.41	NA	8.33	0.00	0.00	NA	0.00	6.25	0.00	NA	4.00	0.00	0.00	7.14	0.00	NA	5.26	0.00	9.52	2.94	0.00	NA	0.00	0.00	0.00	6.25	6.25	0.265076	0.657607
N	alternative_donor	RPS6KB2	chr11	+	chr11:67200309-67200422	chr11:67200317-67200422		chr11:67200309-67200316	chr11:67200308-67200309		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	alternative_donor	ANXA7	chr10	-	chr10:75138782-75139636;chr10:75138782-75139678	chr10:75138782-75139886		chr10:75139637-75139678;chr10:75139679-75139886	chr10:75139678-75139679;chr10:75139886-75139887		0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
N	cassette	ABCC3	chr17	+	chr17:48736730-48741041;chr17:48736730-48744914	chr17:48736730-48738283;chr17:48738476-48741041,chr17:48738476-48744914		chr17:48738284-48738475			80.00	100.00	86.76	NA	90.00	NA	92.11	100.00	NA	91.67	95.45	85.71	100.00	81.82	100.00	100.00	97.14	100.00	78.26	94.12	92.86	81.82	89.19	87.50	100.00	100.00	92.86	NA	72.73	NA	100.00	93.10	68.42	82.61	93.33	78.26	96.06	97.06	1.00	0.680040	0.883836
K	intron_retention		chr17	+	chr17:7462615-7462940				chr17:7462614-7462615;chr17:7462940-7462941		2.17	7.69	8.57	NA	3.85	NA	0.56	0.00	0.00	1.19	0.00	0.00	0.37	0.46	0.00	0.00	0.00	0.00	0.00	1.92	0.00	2.63	3.16	0.00	8.00	1.43	0.00	0.00	3.19	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.47	0.94	0.48	0.810541	1.000000
K	cassette	LST1	chr6	+	chr6:31555096-31556339;chr6:31555096-31556294;chr6:31555511-31556273;chr6:31555096-31556273;chr6:31555511-31556294;chr6:31555511-31556339	chr6:31555511-31555592,chr6:31555096-31555592;chr6:31555744-31556273,chr6:31555744-31556294,chr6:31555744-31556339		chr6:31555593-31555743			10.78	11.66	7.23	8.58	8.54	10.33	28.00	19.54	22.00	21.97	22.30	21.76	27.71	17.65	20.00	29.37	29.25	27.07	11.74	11.39	14.22	11.19	10.78	10.56	16.74	11.86	6.73	20.93	18.87	21.58	13.95	12.09	8.71	8.74	9.33	9.54	14.24	12.90	-1.33	0.420011	0.728865
K	intron_retention	COQ9	chr16	+	chr16:57494017-57494500				chr16:57494016-57494017;chr16:57494500-57494501		8.33	0.00	6.25	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	6.25	7.69	0.00	0.00	0.00	4.17	0.00	0.00	6.25	16.67	6.90	0.00	0.00	0.00	3.33	0.00	6.25	6.25	0.445467	1.000000
K	alternative_acceptor	CTD-2006C1.2,SAFB	chr19	+	chr19:5657359-5661531	chr19:5657359-5661528		chr19:5661529-5661531	chr19:5661531-5661532		33.33	26.61	27.52	31.15	25.61	33.33	28.21	20.83	27.03	26.53	28.21	15.62	33.33	26.47	27.27	33.93	32.00	31.82	26.09	25.00	23.26	27.94	32.47	36.96	17.39	20.83	28.44	28.30	28.33	26.92	24.14	26.06	31.52	19.12	28.81	25.77	27.41	24.57	-2.84	0.495841	0.791230
N	jcn_only_AA		chr22	+	chr22:38026178-38026913;chr22:38026178-38026919	chr22:38026178-38026909		chr22:38026910-38026913;chr22:38026914-38026919	chr22:38026913-38026914;chr22:38026919-38026920		97.67	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	98.61	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	98.84	94.59	100.00	100.00	100.00	100.00	100.00	98.08	100.00	97.53	100.00	100.00	98.70	100.00	100.00	100.00	97.44	100.00	100.00	0.00	0.704987	0.869237
K	intron_retention	GAA	chr17	+	chr17:78084825-78085781				chr17:78084824-78084825;chr17:78085781-78085782		7.87	0.00	9.82	0.00	2.63	NA	0.00	1.41	0.00	0.00	0.00	0.00	1.76	1.16	1.39	0.00	0.42	0.00	3.03	2.97	2.13	0.00	3.31	0.00	13.95	2.40	9.92	1.32	2.07	0.00	0.00	5.60	0.00	0.94	2.73	0.93	0.88	1.90	1.02	0.972961	1.000000
K	intron_retention	MFSD10	chr4	-	chr4:2933391-2933551				chr4:2933390-2933391;chr4:2933551-2933552		4.00	21.95	9.52	12.50	13.89	5.56	0.00	0.00	0.00	1.79	0.00	0.00	1.37	0.00	9.43	1.92	1.43	0.00	10.34	4.35	8.33	18.52	16.28	4.55	0.00	4.17	6.45	0.00	6.00	4.00	9.52	17.65	6.90	8.33	6.25	2.70	4.13	4.08	-0.05	0.935521	1.000000
N	alternative_acceptor	ABCC3	chr17	+	chr17:48765092-48765786;chr17:48765092-48765771	chr17:48765092-48768452		chr17:48765772-48765786;chr17:48765787-48768452	chr17:48765786-48765787;chr17:48768452-48768453		97.87	98.63	98.12	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	97.22	98.28	100.00	98.20	100.00	97.75	97.22	98.41	100.00	98.77	100.00	100.00	97.86	100.00	100.00	94.74	100.00	100.00	97.55	-2.45	0.145277	0.649126
N	cassette	QSOX1	chr1	+	chr1:180159716-180165396	chr1:180159716-180163347;chr1:180163528-180165396		chr1:180163348-180163527			98.88	100.00	99.21	100.00	99.16	94.74	100.00	100.00	100.00	98.43	99.05	100.00	100.00	99.70	99.76	100.00	98.63	97.62	100.00	98.90	98.87	96.34	100.00	97.12	100.00	100.00	99.36	96.25	100.00	98.75	97.43	99.33	97.30	97.73	99.57	97.04	100.00	99.30	-0.70	0.524139	0.800154
N	jcn_only_AA	STX4	chr16	+	chr16:31045436-31045524;chr16:31045436-31045493	chr16:31045436-31045546		chr16:31045494-31045524;chr16:31045525-31045546	chr16:31045524-31045525;chr16:31045546-31045547		91.30	93.88	89.83	86.96	90.75	75.38	93.86	94.44	90.91	89.62	88.71	91.03	92.13	92.31	83.67	90.16	93.38	89.52	93.65	93.81	90.27	91.62	89.63	90.42	100.00	90.40	91.86	91.24	92.13	89.81	91.54	88.50	88.16	89.97	90.62	90.28	93.75	91.93	-1.83	0.462044	0.723425
K	alternative_first_exon	HDGF	chr1	-	chr1:156715166-156717226,chr1:156715166-156718080,chr1:156715166-156719655,chr1:156715166-156720181,chr1:156715166-156721040,chr1:156715166-156737130;chr1:156715166-156725328;chr1:156715166-156722020,chr1:156715166-156721829	chr1:156715166-156721134	chr1:156725329-156725456;chr1:156722021-156722025	chr1:156721135-156721536			96.00	100.00	97.00	NA	84.21	NA	96.30	92.31	95.77	95.35	97.87	91.30	96.77	88.89	96.92	100.00	91.07	100.00	NA	91.30	100.00	91.30	95.65	85.00	100.00	81.82	91.30	90.00	100.00	78.57	87.50	85.19	NA	80.65	92.31	84.21	98.38	90.09	-8.29	0.005685	0.037949
N	jcn_only_AA	INPPL1	chr11	+	chr11:71936211-71939233	chr11:71936211-71936493		chr11:71936494-71939233	chr11:71939233-71939234		0.00	0.00	0.00	NA	NA	NA	2.78	0.00	6.67	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
K	alternative_acceptor	WDR1	chr4	-	chr4:10089560-10089916	chr4:10089565-10089916		chr4:10089560-10089564	chr4:10089559-10089560		100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	97.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	98.86	100.00	98.81	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.24	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.427625	0.740430
K	intron_retention	NAGK	chr2	+	chr2:71295843-71297631				chr2:71295842-71295843;chr2:71297631-71297632		8.18	5.93	17.39	0.00	2.44	0.00	1.37	0.64	0.66	0.00	1.32	0.52	1.04	1.17	1.92	1.33	0.47	0.00	3.75	2.89	0.00	5.71	4.03	3.12	10.71	5.47	7.35	3.17	2.81	0.76	2.94	7.41	4.71	7.32	8.06	3.41	4.23	2.92	-1.32	0.894899	1.000000
K	intron_retention	GPS2,RP11-542C16.2	chr17	-	chr17:7216789-7216886				chr17:7216788-7216789;chr17:7216886-7216887		3.75	0.98	4.65	2.33	2.97	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	5.26	4.94	4.55	6.17	4.17	0.00	2.33	4.40	2.94	4.84	5.88	5.26	5.22	1.03	4.55	3.28	3.03	0.49	3.04	2.55	0.150176	1.000000
K	jcn_only_AA	ATPIF1	chr1	+	chr1:28562964-28564347	chr1:28562964-28564271		chr1:28564272-28564347	chr1:28564347-28564348		4.48	1.37	2.88	2.86	1.84	3.60	1.06	3.64	1.12	2.24	0.93	0.00	1.35	0.00	2.53	1.00	1.60	2.06	1.53	3.51	0.66	7.69	3.77	4.55	1.61	0.00	1.60	5.88	3.30	3.03	3.33	0.00	1.97	4.05	2.11	6.38	1.45	3.42	1.97	0.266824	0.663989
K	cassette	CALML4	chr15	-	chr15:68489967-68497582;chr15:68492020-68497582	chr15:68489967-68497458,chr15:68492020-68497458;chr15:68497490-68497582		chr15:68497459-68497489			53.85	18.18	NA	NA	35.71	NA	64.71	64.71	NA	69.23	78.26	78.57	65.79	70.00	NA	83.33	68.75	NA	53.33	47.06	NA	NA	80.00	NA	63.64	61.54	NA	NA	63.16	NA	NA	NA	36.00	63.64	76.92	72.73	58.48	61.54	3.05	0.334986	0.709176
K	jcn_only_AA	ANKRD13D	chr11	+	chr11:67069123-67069259	chr11:67069123-67069202		chr11:67069203-67069259	chr11:67069259-67069260		100.00	97.53	99.19	100.00	98.22	96.97	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	94.21	100.00	100.00	100.00	97.94	100.00	96.51	NA	87.88	100.00	96.46	100.00	100.00	100.00	100.00	100.00	0.00	0.648169	0.843529
K	alternative_acceptor	TFPT	chr19	-	chr19:54611515-54611632	chr19:54611552-54611632		chr19:54611515-54611551	chr19:54611514-54611515		94.92	96.26	100.00	100.00	97.00	97.35	97.78	100.00	100.00	100.00	100.00	100.00	97.62	100.00	93.10	97.44	96.49	91.67	96.28	97.83	97.99	100.00	100.00	100.00	98.57	100.00	100.00	100.00	100.00	97.06	97.22	100.00	94.65	100.00	97.92	100.00	96.95	98.91	1.96	0.185795	0.660713
K	intron_retention	REEP4	chr8	-	chr8:21998211-21998963				chr8:21998210-21998211;chr8:21998963-21998964		0.00	5.80	0.00	NA	2.56	NA	0.00	0.00	0.00	0.00	1.15	0.00	1.12	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	2.13	NA	0.00	0.00	3.45	NA	2.33	NA	NA	0.00	0.00	0.00	3.33	NA	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	ITGB7	chr12	-	chr12:53585416-53585642;chr12:53585516-53585642	chr12:53585421-53585642		chr12:53585416-53585420;chr12:53585421-53585515	chr12:53585415-53585416;chr12:53585420-53585421		100.00	100.00	NA	100.00	100.00	100.00	100.00	94.29	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	100.00	100.00	98.48	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.253691	0.709013
N	alternative_acceptor		chr6	+	chr6:31919382-31924487;chr6:31919382-31919565;chr6:31919382-31919551	chr6:31919382-31919651		chr6:31919552-31919565;chr6:31919566-31919651;chr6:31919652-31924487	chr6:31919565-31919566;chr6:31919651-31919652;chr6:31924487-31924488		100.00	100.00	100.00	100.00	100.00	98.20	NA	100.00	100.00	NA	NA	NA	50.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	97.75	100.00	100.00	100.00	98.80	100.00	100.00	100.00	NA	100.00	96.30	100.00	100.00	0.00	0.390463	0.709013
K	cassette	LILRB2	chr19	-	chr19:54783931-54784317	chr19:54783931-54784118;chr19:54784155-54784317		chr19:54784119-54784154			99.50	100.00	97.74	NA	100.00	NA	100.00	99.54	98.01	98.68	99.48	99.57	100.00	99.16	99.01	99.59	99.08	99.50	NA	99.17	100.00	94.87	97.87	97.97	100.00	99.48	98.28	98.41	100.00	98.58	98.68	98.16	NA	97.66	96.86	99.04	100.00	99.33	-0.67	0.002590	0.169831
K	cassette	XPNPEP1	chr10	-	chr10:111633186-111637547	chr10:111633186-111635285;chr10:111635358-111637547		chr10:111635286-111635357			100.00	91.67	100.00	NA	100.00	NA	100.00	100.00	100.00	97.62	100.00	100.00	97.56	97.06	100.00	92.11	100.00	96.88	NA	100.00	100.00	100.00	100.00	95.65	NA	95.83	100.00	100.00	95.83	100.00	100.00	97.22	100.00	100.00	100.00	100.00	98.78	100.00	1.22	0.514976	0.793201
K	intron_retention	JUND	chr19	-	chr19:18390855-18391265				chr19:18390854-18390855;chr19:18391265-18391266		100.00	100.00	97.01	97.18	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.85	100.00	100.00	100.00	100.00	95.28	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.80	94.78	90.30	100.00	100.00	100.00	100.00	100.00	0.00	0.901459	1.000000
K	cassette	MFHAS1	chr8	-	chr8:8643566-8654874	chr8:8643566-8647833;chr8:8647945-8654874		chr8:8647834-8647944			0.00	NA	0.00	8.33	NA	5.81	5.08	4.35	6.06	6.52	8.33	7.37	5.00	5.00	11.54	7.14	6.25	8.38	NA	NA	NA	10.53	8.33	6.85	0.00	4.17	NA	0.00	12.50	10.10	0.00	NA	0.00	5.26	5.26	3.55	2.50	4.17	1.67	0.923255	0.980580
N	cassette	ZFPL1	chr11	+	chr11:64852699-64854191	chr11:64852699-64853886;chr11:64854081-64854191		chr11:64853887-64854080			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	87.50	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_acceptor	CDK16,SLC25A5	chrX	+	chrX:47086499-47086579	chrX:47086499-47086558		chrX:47086559-47086579	chrX:47086579-47086580		0.00	0.00	7.32	5.00	4.76	7.50	0.00	3.33	1.37	0.00	2.56	1.92	2.44	0.00	0.78	1.64	0.00	0.00	6.25	8.33	8.11	4.17	3.70	3.57	0.00	2.56	5.41	2.63	4.00	5.26	12.82	12.24	8.00	6.06	3.45	3.80	1.22	2.95	1.73	0.512764	0.800638
K	intron_retention	P2RX5-TAX1BP3,TAX1BP3	chr17	-	chr17:3567567-3567972				chr17:3567566-3567567;chr17:3567972-3567973		0.00	7.69	1.20	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
K	jcn_only_AD	ABTB1	chr3	+	chr3:127393262-127393387	chr3:127393297-127393387		chr3:127393262-127393296	chr3:127393261-127393262		61.54	56.76	77.78	NA	59.09	NA	62.50	67.65	76.00	57.14	61.29	73.33	64.10	64.52	66.67	68.75	76.47	NA	NA	66.67	NA	NA	67.65	50.00	38.89	71.43	58.06	NA	70.00	NA	68.97	76.92	60.00	69.23	83.33	60.00	60.00	67.16	7.16	0.085139	0.632469
N	jcn_only_AD	MCCC1	chr3	-	chr3:52436888-52437198	chr3:52436888-52437153		chr3:52437154-52437198	chr3:52437198-52437199		81.48	100.00	95.35	NA	85.71	NA	91.49	89.47	100.00	91.89	93.75	92.86	92.00	96.88	92.16	89.74	87.27	82.61	100.00	89.66	94.44	84.62	100.00	81.48	NA	100.00	91.89	84.21	87.50	85.71	100.00	95.83	NA	100.00	92.86	89.74	96.00	93.27	-2.73	0.462195	0.715767
K	jcn_only_AD	CPQ	chr8	+	chr8:98041723-98078236	chr8:98067874-98078236		chr8:98041723-98067873	chr8:98041722-98041723		0.00	0.00	0.00	0.00	0.00	NA	0.00	4.88	0.00	0.00	0.00	0.00	0.00	11.54	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	3.03	0.00	0.00	6.67	0.00	3.45	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.44	0.255494	0.657607
K	cassette	LRRC75A-AS1	chr17	+	chr17:16343568-16366146;chr17:16343568-16344681	chr17:16343568-16344387;chr17:16344445-16344681,chr17:16344445-16366146		chr17:16344388-16344444			85.71	96.38	94.00	96.20	95.89	98.28	91.81	100.00	90.72	92.86	94.15	86.84	93.87	100.00	88.03	89.26	92.24	89.26	95.45	100.00	91.94	95.79	94.81	89.02	100.00	NA	96.36	93.81	92.43	89.38	93.33	92.31	96.20	94.26	93.13	93.51	95.83	100.00	4.17	0.952705	0.987421
K	alternative_acceptor	GMPR2	chr14	+	chr14:24705347-24706276	chr14:24705347-24706247		chr14:24706248-24706276	chr14:24706276-24706277		6.67	0.00	4.55	NA	0.00	NA	1.49	4.17	0.00	2.56	1.45	0.00	1.23	2.38	3.03	0.00	0.00	0.00	NA	3.70	0.00	NA	3.57	9.09	0.00	2.78	8.16	NA	2.63	10.00	0.00	4.65	0.00	8.33	5.00	9.52	0.00	3.24	3.24	0.027381	0.546324
N	jcn_only_AD	TAF15	chr17	+	chr17:34151104-34160910;chr17:34152468-34160910	chr17:34151203-34160910		chr17:34151104-34151202;chr17:34151203-34152467	chr17:34151103-34151104;chr17:34151202-34151203		68.42	100.00	77.94	NA	77.42	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.36	100.00	100.00	98.84	100.00	100.00	55.17	100.00	100.00	100.00	71.43	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	69.81	100.00	100.00	86.36	-13.64	0.111970	0.646283
K	intron_retention	TPRKB	chr2	-	chr2:73957157-73957686				chr2:73957156-73957157;chr2:73957686-73957687		8.70	5.36	14.29	5.00	3.92	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.78	0.00	NA	5.56	0.00	0.00	5.00	NA	6.45	0.00	2.86	NA	5.56	0.00	5.26	0.00	0.00	0.00	4.17	0.00	3.75	0.00	0.00	5.00	4.38	2.08	-2.29	0.980479	1.000000
N	jcn_only_AA	EIF3B	chr7	+	chr7:2419147-2420049;chr7:2419147-2419918;chr7:2419147-2419838;chr7:2419147-2419815	chr7:2419147-2419913		chr7:2419816-2419838;chr7:2419839-2419913;chr7:2419914-2419918;chr7:2419919-2420049	chr7:2419838-2419839;chr7:2419913-2419914;chr7:2419918-2419919;chr7:2420049-2420050		22.22	29.60	45.24	32.72	29.44	29.28	36.99	NA	31.58	41.03	38.98	41.67	31.17	26.67	25.00	26.63	41.54	31.58	33.80	35.48	34.85	26.05	33.77	35.00	33.19	20.00	25.00	33.94	41.35	32.31	33.33	30.43	36.01	33.72	26.42	29.27	33.49	26.67	-6.82	0.124664	0.663989
K	intron_retention	ISYNA1	chr19	-	chr19:18545928-18546075				chr19:18545927-18545928;chr19:18546075-18546076		6.67	0.00	0.00	0.00	13.64	0.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	4.69	0.00	6.90	NA	NA	NA	7.14	6.45	5.56	NA	NA	0.00	2.35	3.33	0.99	0.589380	1.000000
N	alternative_acceptor	MALAT1	chr11	+	chr11:65273134-65273856	chr11:65273134-65273422		chr11:65273423-65273856	chr11:65273856-65273857		92.86	100.00	64.71	82.76	63.33	75.32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	90.48	83.33	87.50	100.00	90.91	100.00	83.33	82.35	80.00	90.00	61.54	85.94	85.71	93.33	78.95	89.47	85.71	86.96	86.91	84.52	-2.39	0.699827	0.886757
K	cassette	ABCD4	chr14	-	chr14:74756223-74756993	chr14:74756223-74756729;chr14:74756822-74756993		chr14:74756730-74756821			80.00	71.43	80.00	NA	76.92	NA	100.00	93.75	100.00	100.00	95.24	90.91	100.00	93.33	100.00	91.67	95.83	NA	66.67	NA	90.91	NA	84.62	NA	100.00	77.27	84.00	NA	87.50	NA	66.67	77.27	73.33	75.00	70.59	78.57	86.66	80.00	-6.66	0.726775	0.904885
K	intron_retention		chr5	+	chr5:179250054-179250857				chr5:179250053-179250054;chr5:179250857-179250858		2.96	17.31	2.31	8.61	4.47	38.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	27.93	2.43	6.88	1.47	1.46	1.23	34.62	0.94	1.31	0.21	0.65	2.02	6.32	3.64	25.56	1.09	1.24	0.98	21.43	1.69	-19.75	0.099575	1.000000
K	intron_retention	EIF3A	chr10	-	chr10:120810187-120810710				chr10:120810186-120810187;chr10:120810710-120810711		5.56	0.00	9.30	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.38	NA	9.33	5.95	6.60	0.00	0.00	3.23	0.00	2.99	0.00	29.41	22.22	NA	4.27	4.00	6.14	0.00	2.78	2.78	0.293012	1.000000
K	intron_retention	SRSF9	chr12	-	chr12:120899966-120901752				chr12:120899965-120899966;chr12:120901752-120901753		2.96	1.88	4.03	2.08	1.29	0.00	2.75	0.98	2.68	5.38	3.07	4.00	2.24	1.00	2.53	1.33	4.02	1.89	3.28	3.81	1.82	3.17	2.32	9.59	1.75	1.94	2.64	1.87	1.23	2.83	7.14	5.38	3.15	6.16	4.49	5.23	2.50	2.45	-0.04	0.948858	1.000000
K	alternative_donor	EIF2B5	chr3	+	chr3:183860167-183860289	chr3:183860183-183860289		chr3:183860167-183860182	chr3:183860166-183860167		0.00	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	2.50	0.00	2.22	0.00	0.00	5.88	3.57	4.76	3.03	8.70	0.00	6.67	5.26	4.00	3.23	10.00	0.00	6.06	0.00	4.00	6.06	3.23	0.00	0.00	0.00	0.175743	0.563271
K	intron_retention		chr17	-	chr17:79994185-79994259				chr17:79994184-79994185;chr17:79994259-79994260		8.00	10.84	12.90	11.27	7.96	8.40	1.28	0.00	3.03	0.00	0.00	0.00	1.04	0.00	2.44	0.00	0.00	0.00	5.73	10.34	3.00	6.67	8.86	3.33	8.58	6.90	11.11	2.86	7.46	7.32	12.24	12.90	9.22	6.82	5.45	5.26	7.16	7.45	0.29	0.962765	1.000000
K	intron_retention	SLC12A7	chr5	-	chr5:1053598-1057585				chr5:1053597-1053598;chr5:1057585-1057586		0.00	9.09	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	8.33	NA	0.00	3.70	10.00	15.38	0.00	NA	0.00	4.17	0.00	5.88	4.55	NA	4.44	5.00	6.52	4.54	0.00	-4.54	0.977197	1.000000
K	cassette	ARMC10	chr7	+	chr7:102727212-102738745;chr7:102733101-102738745	chr7:102727212-102737723,chr7:102733101-102737723;chr7:102737796-102738745		chr7:102737724-102737795			100.00	100.00	100.00	NA	100.00	NA	94.00	100.00	100.00	94.44	95.65	100.00	100.00	100.00	100.00	100.00	95.35	100.00	90.91	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	91.67	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.189535	0.709176
K	intron_retention		chr17	-	chr17:7216611-7216698				chr17:7216610-7216611;chr17:7216698-7216699		8.97	5.23	12.22	7.69	8.72	6.25	0.00	2.04	2.22	2.00	0.00	0.00	0.00	0.00	1.64	2.22	0.00	0.00	2.94	8.00	7.87	14.63	7.69	11.36	0.00	7.50	8.99	10.26	5.95	8.33	14.13	11.30	5.33	9.21	7.69	9.28	1.47	7.75	6.28	0.212260	1.000000
N	alternative_last_exon	XPO6	chr16	-	chr16:28109961-28115866	chr16:28113267-28115866	chr16:28109300-28109960	chr16:28113168-28113266			98.53	96.43	96.67	93.75	96.00	80.00	97.56	97.50	97.06	100.00	100.00	100.00	97.44	98.44	96.88	96.55	97.14	100.00	96.15	100.00	95.45	95.83	97.37	93.55	87.50	98.11	95.83	96.43	96.77	96.55	97.30	97.44	97.06	96.88	96.15	97.30	96.75	98.28	1.53	0.124043	0.340761
N	jcn_only_AA	FES	chr15	+	chr15:91434422-91434783	chr15:91434422-91434729		chr15:91434730-91434783	chr15:91434783-91434784		0.00	0.00	4.00	0.00	0.00	NA	1.56	5.00	0.00	NA	0.00	NA	2.30	NA	NA	0.00	0.00	NA	0.00	0.00	16.67	NA	0.00	NA	0.00	16.67	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	8.33	0.00	0.00	0.00	0.318864	0.663989
K	intron_retention	NUB1	chr7	+	chr7:151073030-151073719				chr7:151073029-151073030;chr7:151073719-151073720		1.16	19.05	3.51	0.00	0.00	3.37	0.00	0.00	0.15	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.00	1.50	1.14	0.00	0.00	2.73	NA	2.55	2.78	2.50	5.26	2.27	3.41	3.27	0.00	8.82	0.00	4.48	0.00	1.33	1.33	0.516860	1.000000
K	intron_retention		chr1	-	chr1:1248081-1248166				chr1:1248080-1248081;chr1:1248166-1248167		6.00	20.35	18.75	14.00	22.06	15.22	0.00	0.00	0.00	3.23	2.70	0.00	3.64	0.00	4.17	4.26	9.09	0.00	11.24	6.98	6.74	15.22	27.12	13.79	10.26	8.33	14.81	15.15	17.95	13.16	12.50	16.42	13.00	8.89	12.20	17.07	10.75	6.49	-4.26	0.555244	1.000000
K	jcn_only_AA	LRRC75A-AS1	chr17	+	chr17:16342729-16343424;chr17:16342729-16342841;chr17:16342729-16343498;chr17:16342729-16342973	chr17:16342729-16342894					12.50	2.04	15.71	4.71	5.85	0.00	6.97	19.23	25.16	6.43	6.46	5.01	2.03	6.45	12.04	3.85	3.27	1.00	6.67	25.00	16.88	15.52	9.68	11.65	8.75	18.18	14.08	4.74	6.80	3.33	36.84	21.74	5.19	9.84	4.64	5.63	5.93	18.70	12.77	0.018790	0.537091
N	cassette	ARHGAP30	chr1	-	chr1:161024496-161029403;chr1:161024496-161039317	chr1:161024496-161026177;chr1:161026323-161039317,chr1:161026323-161029403		chr1:161026178-161026322			93.65	100.00	91.35	NA	NA	NA	92.80	96.45	96.47	90.00	95.24	NA	93.88	96.77	96.39	90.91	93.88	NA	NA	96.30	100.00	NA	93.88	NA	100.00	94.44	93.67	88.89	95.24	NA	100.00	93.18	NA	100.00	94.83	100.00	96.94	96.38	-0.56	0.859282	0.951512
K	jcn_only_AA	RPS15	chr19	+	chr19:1438428-1438809	chr19:1438428-1438805		chr19:1438806-1438809	chr19:1438809-1438810		100.00	96.10	96.30	93.89	94.25	94.46	95.96	100.00	92.26	95.85	97.59	96.89	97.04	95.52	93.83	96.68	95.45	95.68	95.16	95.61	95.72	94.88	96.40	94.94	94.85	100.00	94.29	95.63	96.19	94.90	96.32	95.58	97.14	96.12	95.36	96.50	96.03	98.16	2.13	0.111630	0.663989
N	alternative_acceptor	LILRB4	chr19	+	chr19:55177888-55178161;chr19:55177888-55178147;chr19:55177888-55177991	chr19:55177888-55178144		chr19:55177992-55178144;chr19:55178145-55178147;chr19:55178148-55178161	chr19:55178144-55178145;chr19:55178147-55178148;chr19:55178161-55178162		10.70	6.59	8.54	12.59	12.42	11.81	13.66	14.08	13.05	15.12	13.60	13.36	18.87	19.92	21.01	20.79	18.72	20.43	10.74	11.35	11.01	11.07	10.93	12.45	5.88	11.83	10.19	11.16	11.89	12.31	9.11	9.28	9.64	12.40	12.15	11.75	10.19	11.59	1.40	0.460541	0.762514
K	intron_retention	EIF3B	chr7	+	chr7:2418402-2418768				chr7:2418401-2418402;chr7:2418768-2418769		0.00	2.39	6.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.86	0.58	0.00	0.95	0.00	0.29	0.00	-0.29	0.835293	1.000000
K	alternative_acceptor	GUK1,SOX13	chr1	+	chr1:228334640-228335110	chr1:228334640-228335106		chr1:228335107-228335110	chr1:228335110-228335111		95.42	93.31	91.46	95.00	96.23	97.46	98.56	96.10	96.12	97.70	97.52	100.00	97.84	96.05	95.88	100.00	98.52	98.11	91.82	94.79	95.86	95.56	95.57	98.61	100.00	96.74	96.97	96.59	96.48	96.39	94.51	90.32	93.28	95.97	95.71	96.13	95.58	95.73	0.16	0.893721	0.963205
N	jcn_only_AA	HGS	chr17	+	chr17:79668162-79668564;chr17:79668162-79668273;chr17:79668162-79668244;chr17:79668162-79668537	chr17:79668162-79668567		chr17:79668245-79668273;chr17:79668274-79668537;chr17:79668538-79668564;chr17:79668565-79668567	chr17:79668273-79668274;chr17:79668537-79668538;chr17:79668564-79668565;chr17:79668567-79668568		8.74	12.71	7.14	10.58	10.08	11.90	6.00	8.00	6.06	12.30	10.71	11.63	9.80	7.58	8.97	9.82	11.36	8.00	9.72	5.62	7.46	10.00	10.87	10.10	8.96	7.95	8.87	7.69	6.03	10.57	3.76	8.15	9.43	9.45	8.49	7.36	9.57	7.77	-1.81	0.058068	0.663989
K	cassette	ORMDL2	chr12	+	chr12:56211897-56213125	chr12:56211897-56212782;chr12:56212958-56213125		chr12:56212783-56212957			98.41	94.23	96.55	100.00	98.21	94.23	100.00	100.00	97.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.22	97.33	100.00	95.52	93.22	100.00	98.51	100.00	100.00	100.00	100.00	88.46	91.49	89.47	100.00	100.00	98.68	100.00	98.46	-1.54	0.944104	0.985246
K	intron_retention	SRSF5	chr14	+	chr14:70235969-70237183				chr14:70235968-70235969;chr14:70237183-70237184		36.36	26.19	42.86	26.92	31.71	25.00	6.76	10.40	8.33	2.72	6.86	3.19	13.51	8.08	13.59	5.45	6.25	2.08	16.67	25.97	26.23	38.71	38.75	29.27	NA	42.65	33.02	30.99	34.33	20.00	46.81	47.06	36.84	33.98	44.30	44.33	16.67	31.16	14.49	0.751833	1.000000
K	cassette	SUMF2	chr7	+	chr7:56141912-56144526;chr7:56140805-56144526	chr7:56140805-56142278,chr7:56141912-56142278;chr7:56142333-56144526		chr7:56142279-56142332			100.00	87.76	96.77	NA	95.45	NA	95.35	95.45	98.39	95.92	93.15	96.43	94.68	100.00	93.55	93.75	94.74	94.87	94.44	87.50	88.24	95.00	91.49	96.97	100.00	100.00	87.10	92.00	100.00	92.59	100.00	96.15	100.00	97.50	96.00	93.06	95.02	100.00	4.98	0.534012	0.808948
K	cassette	UBN1	chr16	+	chr16:4920974-4922884	chr16:4920974-4921155;chr16:4921303-4922884		chr16:4921156-4921302			85.71	90.91	100.00	NA	NA	NA	89.66	87.50	95.65	82.86	86.21	90.00	87.80	87.50	90.91	88.24	89.29	NA	NA	80.00	NA	NA	83.33	NA	100.00	100.00	100.00	NA	NA	NA	NA	100.00	NA	82.35	89.47	80.95	90.28	87.50	-2.78	0.383297	0.709410
K	intron_retention		chr14	-	chr14:94595013-94595598				chr14:94595012-94595013;chr14:94595598-94595599		5.66	0.57	2.70	2.02	0.61	1.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.73	0.00	1.15	4.17	0.63	0.00	0.77	0.00	1.53	2.70	0.00	0.00	0.00	1.02	2.70	4.65	1.55	1.75	1.43	1.28	0.86	2.70	1.84	0.303857	1.000000
N	cassette	ARL3	chr10	-	chr10:104445759-104459129	chr10:104445759-104449649;chr10:104449701-104459129		chr10:104449650-104449700			100.00	91.53	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.48	100.00	100.00	100.00	100.00	100.00	98.51	100.00	98.04	100.00	100.00	100.00	100.00	100.00	96.15	100.00	100.00	97.14	96.97	100.00	100.00	100.00	100.00	100.00	0.00	0.229553	0.709176
N	jcn_only_AD	CALHM2	chr10	-	chr10:105207326-105209325;chr10:105207326-105209143	chr10:105207326-105209156		chr10:105209144-105209156;chr10:105209157-105209325	chr10:105209156-105209157;chr10:105209325-105209326		22.22	18.84	18.75	NA	18.92	NA	23.91	35.71	21.43	NA	27.03	NA	22.32	33.33	0.00	14.29	20.31	NA	19.23	16.67	15.00	NA	26.36	NA	0.00	25.00	22.22	10.00	22.97	40.00	NA	33.33	23.53	18.75	29.85	27.27	20.77	25.00	4.23	0.126249	0.657607
K	intron_retention	FLII	chr17	-	chr17:18148587-18148667				chr17:18148586-18148587;chr17:18148667-18148668		0.00	2.16	4.35	4.40	3.36	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	3.90	1.74	8.05	5.97	5.41	7.32	4.85	2.91	0.95	2.63	3.39	6.41	3.66	4.59	2.97	6.90	0.76	2.25	1.95	-0.30	0.691587	1.000000
N	cassette	VSIG4	chrX	-	chrX:65242705-65247290	chrX:65242705-65244866;chrX:65244972-65247290		chrX:65244867-65244971			100.00	100.00	100.00	100.00	100.00	100.00	99.62	100.00	100.00	100.00	100.00	98.95	100.00	100.00	100.00	100.00	99.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.67	94.68	95.10	100.00	97.35	95.83	100.00	100.00	100.00	99.55	99.61	99.50	100.00	100.00	0.00	0.959479	0.988554
N	alternative_acceptor	PPIL2	chr22	+	chr22:22049786-22051035;chr22:22049786-22051173;chr22:22049786-22050319	chr22:22049786-22051091		chr22:22050320-22051035;chr22:22051036-22051091;chr22:22051092-22051173	chr22:22051035-22051036;chr22:22051091-22051092;chr22:22051173-22051174		13.33	0.00	5.88	NA	0.00	NA	0.00	0.00	0.00	5.26	3.23	NA	0.00	0.00	0.00	0.00	2.33	NA	9.09	8.33	9.09	NA	4.55	NA	NA	0.00	0.00	0.00	4.17	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.583307	0.841804
K	intron_retention	CNPPD1	chr2	-	chr2:220039629-220039709				chr2:220039628-220039629;chr2:220039709-220039710		1.61	0.00	4.48	NA	0.00	NA	0.00	0.00	2.22	0.00	1.89	0.00	0.00	2.53	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	3.03	8.70	0.00	1.54	1.82	4.00	0.00	0.00	0.00	0.00	0.00	5.88	3.33	2.00	0.00	1.58	1.58	0.386676	1.000000
N	alternative_acceptor	MTCH1	chr6	-	chr6:36938466-36940427	chr6:36938471-36940427		chr6:36938466-36938470	chr6:36938465-36938466		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.55	100.00	100.00	0.00	0.363217	0.709013
N	jcn_only_AA	RARS2	chr6	-	chr6:88227871-88228347	chr6:88227983-88228347		chr6:88227871-88227982	chr6:88227870-88227871		91.30	100.00	94.59	100.00	100.00	95.45	100.00	NA	100.00	93.33	100.00	100.00	100.00	100.00	78.95	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	87.88	95.45	100.00	100.00	96.67	97.73	100.00	100.00	100.00	97.62	100.00	96.67	-3.33	0.118689	0.663989
N	alternative_donor	HGS	chr17	+	chr17:79663072-79663386;chr17:79663030-79663386	chr17:79663034-79663386		chr17:79663030-79663033;chr17:79663034-79663071	chr17:79663029-79663030;chr17:79663033-79663034		2.67	2.50	2.50	0.00	6.45	NA	0.00	0.00	3.33	0.00	0.00	0.00	1.82	0.00	1.43	1.02	0.00	0.00	0.00	1.85	4.00	5.88	1.49	6.78	14.29	1.61	1.45	3.92	5.41	2.78	5.77	6.02	0.00	2.50	1.49	5.62	0.91	1.73	0.82	0.662029	0.849235
K	intron_retention		chr17	-	chr17:73895756-73897062				chr17:73895755-73895756;chr17:73897062-73897063		0.00	3.57	4.17	4.35	3.17	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	NA	0.00	2.56	0.00	0.00	3.77	0.00	4.55	7.69	5.13	21.43	15.62	NA	3.70	0.00	6.45	0.00	7.69	0.00	3.77	9.52	3.03	4.76	3.67	0.00	-3.67	0.978429	1.000000
K	cassette	SUPT6H	chr17	+	chr17:26989361-27000388	chr17:26989361-26999774;chr17:26999877-27000388		chr17:26999775-26999876			10.00	0.00	5.77	NA	NA	NA	14.81	14.81	14.71	7.69	5.00	6.25	10.00	20.83	14.71	16.67	12.00	6.67	NA	NA	NA	NA	5.00	5.26	0.00	9.52	4.17	NA	0.00	NA	NA	12.50	NA	5.26	8.33	9.68	5.00	12.41	7.41	0.151990	0.709176
N	alternative_donor	VASP	chr19	+	chr19:46011035-46020920	chr19:46017630-46020920		chr19:46011035-46017629	chr19:46011034-46011035		2.20	3.45	2.42	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62	2.78	1.55	0.81	1.09	7.69	1.36	1.26	0.79	0.77	0.00	2.17	1.85	0.00	1.59	1.14	0.69	0.00	1.49	1.49	0.658406	0.846764
K	jcn_only_AA	RHOT2	chr16	+	chr16:720558-720674;chr16:720558-720695	chr16:720558-720773		chr16:720675-720695;chr16:720696-720773	chr16:720695-720696;chr16:720773-720774		30.30	37.50	43.75	NA	27.27	NA	0.00	0.00	8.70	5.26	0.00	0.00	0.00	10.00	6.67	3.70	3.33	0.00	25.00	18.18	35.71	18.75	23.08	22.22	24.00	20.83	31.82	11.11	20.00	25.00	23.08	26.32	50.00	20.00	24.14	31.58	24.50	19.50	-5.00	0.556928	0.789398
K	intron_retention	TBC1D20	chr20	-	chr20:419486-419751				chr20:419485-419486;chr20:419751-419752		5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	intron_retention	FMNL1	chr17	+	chr17:43323698-43324233				chr17:43323697-43323698;chr17:43324233-43324234		7.57	8.35	8.63	8.82	6.12	6.56	1.63	1.56	1.14	0.00	0.92	1.33	2.33	2.60	3.60	0.90	2.49	1.54	6.09	7.91	7.75	10.78	6.46	8.33	7.30	7.98	8.31	5.69	6.73	7.14	7.61	10.21	5.71	8.46	9.48	8.05	5.90	7.59	1.69	0.730525	1.000000
N	jcn_only_AA	PPP4R1	chr18	-	chr18:9547929-9549194;chr18:9548277-9549194	chr18:9547951-9549194		chr18:9547929-9547950;chr18:9547951-9548276	chr18:9547928-9547929;chr18:9547950-9547951		96.92	100.00	98.28	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	NA	96.61	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.18	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.175300	0.663989
N	alternative_acceptor	PLXND1	chr3	-	chr3:129275272-129275459;chr3:129274387-129275459;chr3:129275318-129275459	chr3:129275314-129275459		chr3:129274387-129275271;chr3:129275272-129275313;chr3:129275314-129275317	chr3:129274386-129274387;chr3:129275271-129275272;chr3:129275313-129275314		2.50	3.02	2.62	3.10	2.80	4.00	0.68	2.88	3.17	0.89	1.85	0.00	1.75	1.25	4.12	3.23	1.21	2.15	0.61	5.14	2.03	4.13	4.60	3.94	4.58	0.00	3.16	4.69	3.34	1.84	5.56	4.23	2.59	1.72	1.17	1.22	2.17	2.69	0.52	0.542281	0.821842
K	intron_retention	SGF29	chr16	+	chr16:28601547-28601616				chr16:28601546-28601547;chr16:28601616-28601617		9.38	13.33	NA	14.29	16.00	7.69	NA	5.26	0.00	NA	NA	0.00	NA	4.76	5.56	7.14	0.00	NA	16.67	0.00	0.00	8.33	27.78	0.00	12.50	8.57	NA	20.00	NA	4.35	26.09	23.08	23.40	27.27	14.29	12.00	15.00	6.92	-8.09	0.565143	1.000000
K	coord_cassette	TIMMDC1	chr3	+	chr3:119217775-119232487	chr3:119217775-119222378;chr3:119222468-119222800;chr3:119222869-119232487		chr3:119222379-119222467;chr3:119222801-119222868			100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	100.00	92.86	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.06	100.00	100.00	100.00	100.00	95.45	100.00	100.00	100.00	100.00	0.00	0.373901	0.643829
N	jcn_only_AA		chr11	+	chr11:68455569-68456320	chr11:68455569-68456316		chr11:68456317-68456320	chr11:68456320-68456321		100.00	100.00	NA	100.00	100.00	100.00	97.22	100.00	100.00	97.43	100.00	98.17	88.89	100.00	NA	100.00	100.00	100.00	100.00	100.00	98.29	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	NA	97.44	100.00	98.76	98.39	100.00	100.00	99.38	100.00	0.62	0.298038	0.663989
N	alternative_donor	OSGIN1	chr16	+	chr16:83994678-83998666	chr16:83997567-83998666		chr16:83994678-83997566	chr16:83994677-83994678		NA	0.00	NA	0.00	0.00	NA	0.00	0.00	NA	1.41	2.00	0.00	0.00	0.00	NA	0.78	1.14	0.00	0.00	7.14	0.00	3.66	3.64	7.14	NA	0.00	0.00	2.08	1.49	0.00	0.00	0.00	0.00	6.59	5.50	4.17	0.00	0.00	0.00	0.373901	0.650093
N	jcn_only_AA		chr11	+	chr11:60160260-60164034;chr11:60160260-60162418;chr11:60160260-60161301;chr11:60160260-60162423	chr11:60160260-60161259		chr11:60161260-60161301;chr11:60161302-60162418;chr11:60162419-60162423;chr11:60162424-60164034	chr11:60161301-60161302;chr11:60162418-60162419;chr11:60162423-60162424;chr11:60164034-60164035		97.71	100.00	97.96	96.23	98.89	100.00	99.38	97.79	96.72	95.51	100.00	98.36	98.62	98.33	100.00	94.03	100.00	100.00	96.26	95.82	100.00	94.74	97.71	95.00	100.00	97.36	100.00	100.00	97.27	96.36	98.80	99.08	98.19	97.26	99.19	96.85	99.00	97.75	-1.25	0.155174	0.663989
N	jcn_only_AA	ZMIZ2	chr7	+	chr7:44805179-44805762;chr7:44805179-44805886;chr7:44805179-44809053	chr7:44805179-44805565		chr7:44805566-44805762;chr7:44805763-44805886;chr7:44805887-44809053	chr7:44805762-44805763;chr7:44805886-44805887;chr7:44809053-44809054		0.00	0.00	11.11	NA	0.00	NA	16.67	17.14	16.18	5.56	8.70	21.43	12.50	11.67	11.36	0.00	0.00	18.75	8.33	10.87	13.79	15.38	7.14	7.14	0.00	23.53	7.35	14.29	7.14	18.18	17.14	9.86	NA	6.67	0.00	11.36	8.33	14.41	6.08	0.238921	0.663989
K	intron_retention	IDH3B	chr20	-	chr20:2639484-2640170				chr20:2639483-2639484;chr20:2640170-2640171		5.00	2.29	9.43	1.59	2.99	2.41	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	2.74	9.09	2.30	0.00	4.59	8.51	2.33	4.76	6.15	0.00	3.23	1.85	11.43	5.26	3.76	5.36	1.85	3.03	2.31	4.88	2.57	0.489343	1.000000
K	jcn_only_AD	SCNM1	chr1	+	chr1:151138680-151138946	chr1:151138729-151138946		chr1:151138680-151138728	chr1:151138679-151138680		33.33	13.79	17.07	NA	17.86	25.00	16.67	20.00	24.44	25.00	18.52	28.57	20.69	10.00	30.43	21.43	18.18	23.53	33.33	30.77	28.95	NA	27.03	21.43	69.23	18.87	26.83	23.53	17.86	19.23	30.95	30.51	30.00	24.00	33.33	14.81	25.34	25.38	0.04	0.490849	0.735270
K	cassette	FCGR2B	chr1	+	chr1:161643864-161647117	chr1:161643864-161645046;chr1:161645104-161647117		chr1:161645047-161645103			13.16	15.27	23.88	21.21	16.19	22.22	5.38	8.50	13.51	7.50	9.41	9.72	8.00	4.57	4.55	6.38	4.35	3.23	15.38	14.18	22.92	14.07	15.10	13.78	15.62	8.64	16.20	6.00	8.33	8.24	21.43	23.73	14.43	16.30	14.29	12.88	14.85	10.90	-3.95	0.846777	0.949198
N	alternative_donor	RNF220	chr1	+	chr1:45098058-45101216	chr1:45098245-45101216		chr1:45098058-45098244	chr1:45098057-45098058		0.00	0.00	2.13	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.363217	0.650093
N	alternative_last_exon		chr14	+	chr14:88471567-88484659;chr14:88471567-88545447	chr14:88471567-88476732	chr14:88545448-88545713	chr14:88476733-88481155			100.00	100.00	96.83	NA	100.00	NA	97.62	98.25	95.83	100.00	100.00	NA	100.00	100.00	94.44	100.00	100.00	NA	100.00	100.00	96.30	NA	100.00	NA	100.00	96.55	97.26	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.448058	0.601724
K	intron_retention		chr2	+	chr2:71302773-71303733				chr2:71302772-71302773;chr2:71303733-71303734		9.80	9.69	15.07	6.25	7.62	5.83	1.43	1.56	1.49	0.00	1.08	1.01	2.40	1.89	3.77	1.32	0.85	1.23	7.08	8.29	5.88	1.27	6.87	6.32	12.65	6.63	12.63	12.82	6.10	4.89	6.77	12.86	7.17	8.85	8.24	8.57	7.12	6.70	-0.43	0.320311	1.000000
K	alternative_last_exon	LITAF	chr16	-	chr16:11647535-11650366;chr16:11643602-11650366	chr16:11647546-11650366	chr16:11641578-11643601	chr16:11647279-11647545			98.10	44.44	99.74	58.97	70.97	17.14	99.61	99.67	99.72	99.36	99.30	99.81	99.53	99.61	99.87	99.88	99.02	99.80	16.67	99.23	84.85	99.46	99.11	99.47	25.00	99.38	99.74	99.29	97.76	99.11	97.65	99.15	14.81	99.48	99.53	99.84	34.72	99.31	64.59	0.029693	0.217248
K	intron_retention	MRPL43	chr10	-	chr10:102746733-102746846				chr10:102746732-102746733;chr10:102746846-102746847		12.50	14.29	12.90	0.00	8.33	NA	1.22	0.00	0.00	0.00	0.00	0.00	1.14	0.00	0.00	0.00	1.16	0.00	0.00	5.00	5.66	0.00	2.82	11.76	6.25	7.69	7.69	0.00	1.85	0.00	18.75	2.78	3.12	0.00	2.78	3.45	2.17	6.35	4.18	0.830188	1.000000
N	jcn_only_AD	COLGALT1	chr19	+	chr19:17691050-17691507;chr19:17690419-17691507	chr19:17691429-17691507		chr19:17690419-17691049;chr19:17691050-17691428	chr19:17690418-17690419;chr19:17691049-17691050		1.27	0.00	3.01	NA	0.00	NA	1.44	4.26	0.00	1.74	1.63	4.69	1.74	0.00	2.70	4.00	2.47	0.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	0.00	1.99	2.38	0.00	0.00	7.69	4.17	0.00	2.56	2.63	0.00	0.00	0.64	0.64	0.258025	0.657607
K	cassette	PHF1	chr6	+	chr6:33382922-33383366	chr6:33382922-33383011;chr6:33383107-33383366		chr6:33383012-33383106			96.49	100.00	98.65	100.00	97.37	NA	92.86	100.00	97.22	95.00	100.00	NA	100.00	100.00	100.00	88.24	100.00	100.00	100.00	98.28	100.00	100.00	95.74	100.00	100.00	100.00	97.22	100.00	93.75	90.00	95.24	100.00	96.43	90.32	93.33	100.00	100.00	99.14	-0.86	0.937268	0.984560
K	jcn_only_AA	RNF10	chr12	+	chr12:121000874-121001136;chr12:121000874-121001243;chr12:121000874-121001149	chr12:121000874-121001134		chr12:121001135-121001136;chr12:121001137-121001149;chr12:121001150-121001243	chr12:121001136-121001137;chr12:121001149-121001150;chr12:121001243-121001244		8.82	0.00	10.77	9.52	10.42	NA	7.37	10.92	9.29	17.57	17.65	8.93	10.64	13.21	11.71	12.50	14.29	13.73	0.00	11.11	11.76	8.24	8.70	12.09	14.29	6.42	6.14	9.21	9.17	9.30	14.29	12.31	11.11	11.11	16.81	13.07	9.01	11.02	2.01	0.231342	0.663989
K	intron_retention		chr10	+	chr10:124922345-124923335				chr10:124922344-124922345;chr10:124923335-124923336		14.29	0.00	28.57	0.00	7.14	0.00	16.67	4.76	4.17	4.17	0.00	0.00	8.00	0.00	8.33	0.00	12.50	0.00	6.25	20.00	0.00	33.33	15.79	35.71	NA	13.04	25.00	13.33	8.33	0.00	23.08	25.00	25.00	17.39	31.82	24.14	8.00	13.66	5.66	0.905300	1.000000
K	jcn_only_AD	USF1	chr1	-	chr1:161011202-161011524;chr1:161011202-161011623	chr1:161011202-161011440		chr1:161011441-161011524;chr1:161011525-161011623	chr1:161011524-161011525;chr1:161011623-161011624		96.10	100.00	97.80	100.00	100.00	NA	100.00	98.44	100.00	100.00	100.00	100.00	100.00	100.00	98.36	100.00	100.00	100.00	95.65	100.00	96.55	100.00	96.72	100.00	100.00	98.90	98.63	93.75	98.48	100.00	98.61	100.00	93.75	100.00	97.62	100.00	100.00	98.75	-1.25	0.740503	0.864412
K	jcn_only_AA	RP11-745O10.4,TMBIM4	chr12	-	chr12:66547191-66563634	chr12:66547229-66563634		chr12:66547191-66547228	chr12:66547190-66547191		100.00	100.00	98.21	92.86	95.65	NA	98.97	98.42	98.05	97.87	97.82	98.24	99.24	98.90	96.61	99.12	98.48	98.43	100.00	99.19	98.33	98.28	96.00	100.00	NA	99.05	99.42	97.87	98.91	98.46	100.00	99.21	100.00	98.18	100.00	97.59	100.00	99.12	-0.88	0.290825	0.663989
K	intron_retention	POLR2H	chr3	+	chr3:184081354-184082753				chr3:184081353-184081354;chr3:184082753-184082754		17.65	18.18	9.09	NA	16.67	NA	0.00	13.64	5.00	NA	0.00	NA	0.00	12.50	7.50	0.00	0.00	NA	9.09	6.25	0.00	7.69	21.43	NA	30.00	25.00	14.63	NA	13.04	0.00	11.11	10.26	7.14	18.18	26.67	9.09	8.12	13.07	4.96	0.343005	1.000000
K	cassette	ALDH3A2	chr17	+	chr17:19566813-19575033	chr17:19566813-19568260;chr17:19568361-19575033		chr17:19568261-19568360			95.24	100.00	96.15	100.00	100.00	NA	100.00	100.00	100.00	98.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.44	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	98.39	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	cassette	HCLS1	chr3	-	chr3:121355337-121361773	chr3:121355337-121355992;chr3:121356104-121361773		chr3:121355993-121356103			98.76	96.60	98.25	98.31	97.91	100.00	99.70	100.00	100.00	99.60	100.00	99.13	99.77	100.00	100.00	100.00	99.30	99.51	97.98	100.00	99.29	98.51	98.22	99.41	100.00	100.00	99.63	99.33	99.40	98.46	97.50	98.09	94.19	97.17	98.52	97.74	98.84	100.00	1.16	0.236428	0.709176
N	alternative_acceptor	TNK2	chr3	-	chr3:195594152-195594231;chr3:195594136-195594231	chr3:195594130-195594231		chr3:195594130-195594135;chr3:195594136-195594151	chr3:195594129-195594130;chr3:195594135-195594136		9.09	4.44	25.00	NA	15.38	NA	NA	15.00	7.69	NA	NA	NA	NA	15.79	9.09	NA	27.27	NA	21.05	10.71	18.18	NA	20.00	NA	14.29	4.08	0.00	NA	20.00	NA	7.69	22.22	23.53	NA	10.00	36.36	17.67	9.90	-7.77	0.304967	0.709013
K	intron_retention		chr11	+	chr11:67818132-67818207				chr11:67818131-67818132;chr11:67818207-67818208		2.95	1.99	3.75	1.53	2.12	1.58	0.40	0.65	0.00	1.83	1.73	0.00	0.90	0.30	1.27	0.00	1.06	0.00	1.74	3.49	1.74	3.39	4.00	1.61	1.68	2.24	2.14	2.38	2.16	0.68	6.88	5.76	3.01	2.73	4.67	1.73	1.71	2.60	0.89	0.548450	1.000000
K	cassette	IL2RG	chrX	-	chrX:70328197-70329077	chrX:70328197-70328448;chrX:70328546-70329077		chrX:70328449-70328545			100.00	100.00	96.84	91.43	95.74	96.15	100.00	96.61	98.16	98.44	97.33	98.39	95.65	94.59	96.83	100.00	100.00	100.00	100.00	95.38	95.59	94.74	95.24	95.35	100.00	97.10	98.59	100.00	96.67	100.00	96.77	97.17	97.56	95.24	95.65	94.55	100.00	96.69	-3.31	0.075260	0.640086
N	intron_retention	MBD1	chr18	-	chr18:47796182-47797838				chr18:47796181-47796182;chr18:47797838-47797839		90.00	100.00	90.91	NA	81.25	NA	76.92	80.00	75.00	NA	78.95	NA	75.00	NA	NA	72.73	87.50	NA	NA	93.55	100.00	90.00	100.00	100.00	NA	80.95	91.43	91.67	95.45	100.00	100.00	93.33	100.00	87.10	92.59	100.00	88.46	90.00	1.54	0.958001	1.000000
N	cassette	DPP7	chr9	-	chr9:140007572-140008316;chr9:140007740-140008316	chr9:140007572-140007812,chr9:140007740-140007812;chr9:140007949-140008316		chr9:140007813-140007948			96.30	98.96	100.00	96.72	96.79	100.00	100.00	98.31	98.77	100.00	100.00	100.00	100.00	100.00	98.44	100.00	100.00	100.00	92.71	97.22	97.87	100.00	97.01	98.41	100.00	100.00	98.63	97.83	99.29	100.00	93.75	98.28	97.41	95.00	96.43	96.40	99.48	97.77	-1.71	0.710276	0.896124
N	alternative_acceptor		chr16	+	chr16:30666915-30667140;chr16:30666915-30667201	chr16:30666915-30667188		chr16:30667141-30667188;chr16:30667189-30667201	chr16:30667188-30667189;chr16:30667201-30667202		100.00	100.00	97.44	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.37	98.39	93.02	100.00	100.00	100.00	100.00	100.00	0.00	0.579751	0.839743
N	alternative_acceptor	CCAR2	chr8	+	chr8:22476869-22477150	chr8:22476869-22477024		chr8:22477025-22477150	chr8:22477150-22477151		3.92	3.30	10.17	6.25	1.49	3.92	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	3.45	0.00	0.00	0.00	1.69	0.00	3.08	0.00	4.05	0.00	0.00	6.06	3.70	6.90	4.08	5.00	2.00	0.00	0.00	0.00	0.00	2.44	0.00	1.00	1.00	0.353325	0.709013
K	intron_retention	IRF5	chr7	+	chr7:128586617-128587076				chr7:128586616-128586617;chr7:128587076-128587077		18.18	NA	14.29	NA	NA	NA	1.54	0.97	0.00	0.00	1.23	0.00	1.06	1.67	0.00	1.59	1.80	1.01	0.00	8.74	NA	7.44	7.10	8.78	0.00	9.20	10.00	4.26	4.95	3.26	15.38	3.45	NA	11.59	7.46	10.83	0.53	8.97	8.44	0.079366	1.000000
K	intron_retention	NPL	chr1	+	chr1:182775368-182781290				chr1:182775367-182775368;chr1:182781290-182781291		2.82	4.35	6.43	0.00	3.94	0.00	2.19	3.76	8.33	0.68	1.33	0.00	1.90	4.48	7.46	1.33	1.07	0.00	1.61	3.21	2.47	1.35	2.55	1.44	4.65	5.26	6.97	0.93	3.31	0.00	3.31	3.56	1.47	3.39	3.87	0.66	2.04	3.54	1.49	0.619730	1.000000
K	jcn_only_AA	ZNF467	chr7	-	chr7:149461768-149466178	chr7:149463329-149466178		chr7:149461768-149463328	chr7:149461767-149461768		81.82	45.00	82.35	NA	14.29	NA	83.33	90.48	NA	NA	66.67	NA	85.29	80.00	92.86	NA	75.00	NA	12.90	88.24	40.00	NA	NA	NA	18.75	90.00	86.67	NA	NA	NA	72.73	80.00	18.75	NA	70.00	NA	31.88	85.03	53.16	0.031236	0.651306
N	cassette	RP11-216L13.17,TMEM141	chr9	+	chr9:139685877-139686702;chr9:139686230-139686702	chr9:139686230-139686398,chr9:139685877-139686398;chr9:139686483-139686702		chr9:139686399-139686482			73.33	80.43	81.25	NA	73.91	80.00	95.16	90.91	88.89	94.59	97.73	100.00	90.48	86.67	82.05	95.24	87.50	80.77	86.49	100.00	92.11	100.00	85.19	80.00	84.62	NA	80.00	100.00	100.00	100.00	NA	88.89	82.86	92.31	76.19	100.00	85.56	88.79	3.23	0.868391	0.954868
K	jcn_only_AA	PIH1D1	chr19	-	chr19:49949952-49950280;chr19:49950002-49950280;chr19:49950052-49950280	chr19:49949853-49950280		chr19:49949853-49949951;chr19:49949952-49950001;chr19:49950002-49950051	chr19:49949852-49949853;chr19:49949951-49949952;chr19:49950001-49950002		0.00	0.89	2.50	0.00	2.25	2.40	0.00	0.00	2.38	0.00	0.00	4.00	3.77	0.00	4.17	3.70	2.86	0.00	4.62	6.82	2.24	5.56	0.00	8.33	0.00	5.00	1.37	0.00	5.00	2.78	2.99	2.22	3.12	0.00	0.00	0.00	2.00	1.50	-0.51	0.790204	0.908919
N	alternative_acceptor	GMIP	chr19	-	chr19:19746345-19746452	chr19:19746379-19746452		chr19:19746345-19746378	chr19:19746344-19746345		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	93.75	100.00	NA	100.00	95.45	100.00	100.00	100.00	0.00	0.363217	0.709013
N	cassette	U2AF1,U2AF1L5	chr21	-	chr21:44515854-44521475;chr21:44515854-44524424	chr21:44515854-44520562;chr21:44520630-44521475,chr21:44520630-44524424		chr21:44520563-44520629			75.00	66.06	73.73	90.97	84.35	91.84	71.28	90.57	79.10	86.34	75.82	82.76	64.23	92.42	84.71	86.96	76.35	89.66	69.15	82.09	70.83	85.12	76.43	91.50	57.69	78.95	67.01	87.29	77.68	91.52	69.84	68.37	63.27	82.94	75.40	87.92	65.15	80.52	15.38	0.004461	0.236885
K	intron_retention	NSMAF	chr8	-	chr8:59496760-59498210				chr8:59496759-59496760;chr8:59498210-59498211		3.33	0.00	10.00	8.11	6.67	0.00	3.23	4.00	3.45	3.39	3.33	2.13	6.45	0.00	0.00	0.00	2.08	3.45	11.11	0.00	0.00	5.26	7.58	6.12	NA	13.64	3.03	5.13	2.94	3.45	12.50	6.38	11.54	12.12	7.94	8.70	6.45	3.67	-2.79	0.628534	1.000000
N	alternative_donor	CCDC130	chr19	+	chr19:13873252-13873403	chr19:13873256-13873403		chr19:13873252-13873255	chr19:13873251-13873252		4.65	4.65	5.66	3.33	3.77	4.35	0.00	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	9.30	8.82	2.90	4.76	4.69	8.00	0.00	4.88	5.26	0.00	2.22	7.32	7.32	4.05	3.23	2.86	2.27	6.67	1.61	4.77	3.15	0.521862	0.771242
K	cassette	EIF4E2	chr2	+	chr2:233421241-233428956	chr2:233421241-233422593;chr2:233422729-233428956		chr2:233422594-233422728			100.00	100.00	93.22	100.00	91.67	92.59	100.00	96.10	96.92	96.55	96.88	92.45	97.92	97.83	96.25	94.44	93.00	84.31	96.77	97.78	95.12	94.87	100.00	100.00	100.00	97.92	100.00	94.00	96.15	93.65	100.00	97.67	100.00	96.23	100.00	93.94	100.00	97.88	-2.12	0.340689	0.709176
N	alternative_donor		chr6	-	chr6:99848188-99848419;chr6:99848188-99848462	chr6:99848188-99850415		chr6:99848420-99848462;chr6:99848463-99850415	chr6:99848462-99848463;chr6:99850415-99850416		0.00	0.00	1.56	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	6.90	21.43	0.00	0.00	6.90	0.00	0.00	5.66	4.76	0.00	15.38	13.64	10.20	31.25	5.41	0.00	0.00	0.00	3.45	3.45	0.990787	0.997584
N	alternative_acceptor	PEF1	chr1	-	chr1:32096352-32098095;chr1:32096316-32098095;chr1:32096322-32098095;chr1:32096444-32098095	chr1:32096334-32098095		chr1:32096316-32096321;chr1:32096322-32096333;chr1:32096334-32096351;chr1:32096352-32096443	chr1:32096315-32096316;chr1:32096321-32096322;chr1:32096333-32096334;chr1:32096351-32096352		1.22	1.82	0.00	0.00	4.26	8.33	0.00	4.23	3.33	3.12	3.95	3.70	0.00	0.00	0.00	4.48	0.00	2.13	13.04	0.00	1.92	0.00	1.92	0.00	4.55	0.00	0.00	6.52	2.08	0.00	4.55	2.82	4.17	0.00	0.00	4.23	3.00	0.61	-2.39	0.333584	0.709013
N	intron_retention		chr20	-	chr20:57570815-57571906				chr20:57570814-57570815;chr20:57571906-57571907		98.47	100.00	97.67	97.22	100.00	97.32	100.00	90.00	92.86	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.70	100.00	100.00	98.00	98.10	100.00	100.00	0.00	0.500354	1.000000
N	jcn_only_AA	ADRBK1	chr11	+	chr11:67047372-67047968;chr11:67047372-67047965;chr11:67047372-67053526	chr11:67047372-67048202		chr11:67047966-67047968;chr11:67047969-67048202;chr11:67048203-67053526	chr11:67047968-67047969;chr11:67048202-67048203;chr11:67053526-67053527		89.11	78.22	95.28	NA	54.05	NA	96.49	100.00	93.86	100.00	98.09	100.00	94.41	98.41	96.77	100.00	98.35	100.00	56.60	91.80	61.90	83.33	89.77	95.83	71.88	94.55	90.60	80.00	89.23	NA	100.00	94.55	52.46	94.44	96.10	94.59	75.05	96.48	21.43	0.040213	0.663989
N	alternative_acceptor	METTL3	chr14	-	chr14:21966514-21967168	chr14:21966550-21967168		chr14:21966514-21966549	chr14:21966513-21966514		25.00	8.82	32.00	0.00	17.14	NA	30.77	58.33	37.50	61.54	42.11	NA	20.00	38.46	39.13	28.57	38.89	NA	5.13	31.25	8.70	41.67	29.41	NA	12.50	50.00	38.89	16.67	17.86	23.53	23.08	17.65	3.12	36.36	25.00	23.53	10.66	34.86	24.20	0.007672	0.432575
K	jcn_only_AA	CNBP	chr3	-	chr3:128890352-128890476	chr3:128890382-128890476		chr3:128890352-128890381	chr3:128890351-128890352		94.74	100.00	92.62	86.67	88.89	NA	94.27	94.44	95.52	90.00	92.04	84.21	95.42	98.55	96.74	89.84	89.22	75.00	NA	94.44	93.55	94.12	97.22	94.23	NA	94.64	96.94	90.91	97.89	93.94	88.10	94.39	90.00	92.47	94.05	91.55	94.84	94.54	-0.31	0.766496	0.896441
K	intron_retention	C19orf43	chr19	-	chr19:12841883-12842157				chr19:12841882-12841883;chr19:12842157-12842158		5.22	2.23	1.96	0.98	1.83	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	5.63	1.45	1.20	2.07	5.26	2.15	0.00	0.84	0.85	0.94	1.23	10.84	7.22	7.83	2.30	4.65	2.61	2.19	2.61	0.42	0.937749	1.000000
K	intron_retention	DDX41	chr5	-	chr5:176939647-176939780				chr5:176939646-176939647;chr5:176939780-176939781		5.71	2.50	8.05	8.82	7.50	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.19	8.16	5.41	8.70	7.41	7.41	11.29	0.00	9.33	6.45	5.88	4.17	17.02	10.53	9.00	8.57	4.69	5.88	3.85	2.85	-0.99	0.948923	1.000000
K	intron_retention	ASAH1	chr8	-	chr8:17919877-17924728				chr8:17919876-17919877;chr8:17924728-17924729		89.19	96.49	98.55	93.33	93.24	91.67	95.07	95.10	96.26	97.71	97.40	98.50	95.07	93.33	94.34	92.96	96.67	97.22	84.62	90.74	83.33	92.25	92.40	91.18	100.00	93.59	91.95	96.59	92.71	92.00	91.86	93.33	90.48	92.24	90.95	88.93	95.07	92.59	-2.47	0.808394	1.000000
K	cassette	DNAJC19	chr3	-	chr3:180703785-180705810	chr3:180703785-180704730;chr3:180704811-180705810		chr3:180704731-180704810			76.00	83.33	70.83	46.15	63.64	53.33	76.47	70.00	82.14	64.00	76.09	66.67	86.21	70.00	84.00	75.00	70.00	75.00	80.95	92.31	77.42	75.00	76.00	NA	69.23	80.00	86.96	NA	80.77	80.00	NA	64.00	65.52	73.33	84.21	70.59	78.71	76.00	-2.71	0.896667	0.967641
K	jcn_only_AA	C17orf49	chr17	+	chr17:6920005-6920268	chr17:6920005-6920228		chr17:6920229-6920268	chr17:6920268-6920269		98.36	100.00	97.58	100.00	97.73	98.46	100.00	97.22	100.00	100.00	100.00	100.00	100.00	98.61	100.00	100.00	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	97.12	97.39	100.00	98.11	100.00	100.00	97.60	96.05	100.00	98.08	98.35	100.00	98.48	-1.52	0.939975	0.980461
N	cassette	PLXNB2	chr22	-	chr22:50722420-50723001	chr22:50722420-50722560;chr22:50722674-50723001		chr22:50722561-50722673			100.00	100.00	92.65	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	96.00	NA	NA	96.88	100.00	100.00	100.00	97.30	NA	100.00	NA	NA	93.33	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	cassette	ANXA2	chr15	-	chr15:60678286-60689456;chr15:60678286-60690141	chr15:60678286-60688571;chr15:60688627-60689456,chr15:60688627-60690141		chr15:60688572-60688626			0.94	0.52	0.58	10.00	4.48	21.82	0.80	0.98	0.76	3.17	1.16	2.12	0.70	1.35	1.22	3.96	1.02	2.08	2.13	0.99	1.82	5.74	1.86	4.57	0.00	0.38	0.28	6.25	3.28	5.68	1.12	0.95	3.41	2.21	1.69	2.18	0.75	0.98	0.23	0.595876	0.848084
K	intron_retention	PPP6R2	chr22	+	chr22:50882547-50882627				chr22:50882546-50882547;chr22:50882627-50882628		3.70	0.83	7.89	0.00	4.00	3.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	NA	1.71	4.44	1.06	3.12	7.32	0.00	2.55	6.98	3.33	0.00	8.33	0.00	9.62	3.39	8.05	6.90	9.09	6.90	1.27	4.07	2.80	0.780248	1.000000
K	intron_retention		chr16	+	chr16:89804314-89804383				chr16:89804313-89804314;chr16:89804383-89804384		26.32	18.42	34.48	12.50	8.33	10.71	16.67	NA	NA	8.33	0.00	NA	18.18	25.00	15.38	7.14	5.26	0.00	0.00	36.84	8.70	17.65	13.33	12.50	0.00	26.32	9.09	12.50	7.69	7.14	40.00	21.95	23.53	NA	22.22	11.43	17.43	26.32	8.89	0.041302	1.000000
N	cassette	SPG7	chr16	+	chr16:89617018-89620201	chr16:89617018-89619386;chr16:89619544-89620201		chr16:89619387-89619543			93.33	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	94.74	94.44	88.89	100.00	100.00	93.10	100.00	100.00	NA	84.62	100.00	88.46	96.55	93.10	100.00	100.00	96.66	-3.34	0.426240	0.734584
K	jcn_only_AD	CDK5RAP3,RP11-6N17.9	chr17	+	chr17:46051017-46051296;chr17:46051063-46051296	chr17:46051060-46051296		chr17:46051017-46051059;chr17:46051060-46051062	chr17:46051016-46051017;chr17:46051059-46051060		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	6.06	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.49	4.35	0.00	0.00	0.00	0.00	5.36	3.03	0.00	1.72	0.00	3.57	5.36	1.41	0.00	0.00	0.00	0.373901	0.657607
N	alternative_acceptor	MAEA	chr4	+	chr4:1321492-1323664;chr4:1321492-1326544	chr4:1321492-1322421		chr4:1322422-1323664;chr4:1323665-1326544	chr4:1323664-1323665;chr4:1326544-1326545		3.33	4.55	2.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	3.33	0.00	1.15	0.00	NA	3.45	0.00	3.23	1.01	4.76	NA	4.17	4.76	7.14	1.79	0.00	3.57	2.94	0.00	5.77	2.83	8.00	0.64	3.39	2.75	0.494815	0.791230
K	intron_retention		chr11	+	chr11:72536453-72537217				chr11:72536452-72536453;chr11:72537217-72537218		2.33	0.00	5.08	NA	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	8.33	NA	NA	NA	0.00	0.00	0.00	NA	0.00	10.00	0.00	0.00	3.77	NA	0.00	NA	5.26	0.00	0.00	0.00	2.70	5.88	0.00	1.17	1.17	0.629122	1.000000
N	jcn_only_AD	COMMD7	chr20	-	chr20:31294563-31315699	chr20:31294563-31299448		chr20:31299449-31315699	chr20:31315699-31315700		0.00	9.76	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	alternative_acceptor	POLR2H	chr3	+	chr3:184084589-184085964	chr3:184084589-184085900		chr3:184085901-184085964	chr3:184085964-184085965		7.69	14.29	3.77	7.69	6.25	5.00	4.35	4.76	12.00	7.69	0.00	NA	4.00	6.25	8.82	3.70	4.35	5.88	7.50	0.00	9.09	5.26	6.98	10.00	4.90	0.00	9.76	8.33	11.11	17.65	5.13	4.26	5.38	14.29	3.70	5.88	5.14	4.95	-0.20	0.212223	0.671247
N	cassette	NRBP1	chr2	+	chr2:27657630-27659619	chr2:27657630-27657999;chr2:27658095-27659619		chr2:27658000-27658094			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.06	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	alternative_acceptor	LYPLA2,SEC22B	chr1	+	chr1:24120816-24121041	chr1:24120816-24120916		chr1:24120917-24121041	chr1:24121041-24121042		94.00	100.00	100.00	100.00	92.73	NA	100.00	100.00	100.00	92.59	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	88.24	92.86	100.00	100.00	100.00	100.00	100.00	90.24	100.00	100.00	98.33	92.86	91.18	100.00	94.12	100.00	100.00	100.00	97.06	93.43	-3.63	0.651731	0.872539
N	alternative_donor	SAMHD1	chr20	-	chr20:35575208-35579838	chr20:35575208-35579152		chr20:35579153-35579838	chr20:35579838-35579839		0.00	0.00	1.06	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	1.07	0.27	0.53	1.11	0.61	0.00	0.53	NA	0.00	NA	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	6.67	3.03	1.82	NA	0.00	0.00	1.28	0.00	0.27	0.27	0.211093	0.583036
N	alternative_donor	STAT5A	chr17	+	chr17:40460352-40461064	chr17:40460966-40461064		chr17:40460352-40460965	chr17:40460351-40460352		2.08	1.67	2.33	1.89	0.00	0.53	0.00	0.00	0.00	0.00	0.00	0.51	0.00	0.00	0.70	0.00	0.00	0.66	0.00	2.70	0.00	1.28	1.69	3.12	7.14	2.22	3.08	0.00	2.08	0.30	4.88	2.99	3.03	3.57	4.08	2.51	0.83	2.15	1.32	0.996232	0.998383
K	intron_retention	TMEM8A	chr16	-	chr16:422284-422610				chr16:422283-422284;chr16:422610-422611		6.33	0.00	5.13	0.00	6.78	0.00	2.99	1.22	1.49	2.00	2.13	0.00	1.43	3.80	2.53	5.56	5.13	0.00	0.00	2.99	2.41	0.00	4.11	0.00	9.52	3.66	5.63	3.70	3.57	0.00	5.97	3.95	1.49	7.84	4.17	4.44	1.46	3.73	2.27	0.944293	1.000000
N	jcn_only_AD	EIF3K	chr19	+	chr19:39109864-39110976;chr19:39109939-39110976;chr19:39109958-39110976;chr19:39109943-39110976	chr19:39109968-39110976		chr19:39109864-39109938;chr19:39109939-39109942;chr19:39109943-39109957;chr19:39109958-39109967	chr19:39109863-39109864;chr19:39109938-39109939;chr19:39109942-39109943;chr19:39109957-39109958		96.05	93.67	92.55	96.05	94.90	95.48	96.10	97.67	98.46	96.02	95.14	96.39	97.12	96.08	98.89	95.53	96.72	97.80	97.70	95.24	95.83	92.41	96.21	96.75	97.71	93.55	95.24	95.74	96.62	98.22	95.24	95.83	94.19	96.92	94.90	95.33	96.61	95.64	-0.97	0.637826	0.818639
N	jcn_only_AA	RELT	chr11	+	chr11:73104963-73105280	chr11:73104963-73105270		chr11:73105271-73105280	chr11:73105280-73105281		0.00	0.00	3.26	NA	0.00	NA	0.00	4.26	0.00	0.00	0.00	0.00	0.00	1.52	0.00	3.08	0.00	0.00	NA	4.44	0.00	0.00	6.45	NA	0.00	0.00	2.04	0.00	5.00	NA	0.00	3.70	NA	0.00	0.00	0.00	0.00	0.76	0.76	0.107918	0.663989
N	jcn_only_AD	PRAP1,ZNF511	chr10	+	chr10:135123734-135125219	chr10:135123793-135125219		chr10:135123734-135123792	chr10:135123733-135123734		100.00	100.00	100.00	92.86	100.00	NA	97.30	100.00	100.00	95.83	98.36	NA	100.00	100.00	100.00	100.00	96.30	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	90.91	97.87	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	0.00	0.363217	0.657607
K	cassette	CARD8	chr19	-	chr19:48737801-48744218	chr19:48737801-48741639;chr19:48741784-48744218		chr19:48741640-48741783			50.00	100.00	68.75	NA	NA	NA	62.07	55.00	36.84	NA	66.67	NA	52.00	47.37	50.00	NA	60.00	NA	NA	60.00	NA	NA	NA	NA	NA	NA	83.33	NA	NA	NA	NA	NA	100.00	NA	NA	NA	81.03	52.50	-28.53	0.134594	0.709176
N	cassette	SHARPIN	chr8	-	chr8:145153898-145154179;chr8:145153893-145154179	chr8:145153898-145153983,chr8:145153893-145153983;chr8:145154109-145154179		chr8:145153984-145154108			86.96	74.32	89.66	85.71	83.33	87.50	93.75	86.96	85.00	90.91	89.36	92.86	91.89	86.36	94.44	86.21	88.14	90.91	89.71	87.50	87.32	71.43	83.33	72.73	85.37	100.00	85.29	88.89	86.49	92.00	84.38	87.80	87.34	85.71	77.42	92.59	88.53	86.96	-1.57	0.665080	0.877602
N	cassette	SLC22A18	chr11	+	chr11:2929561-2937851	chr11:2929561-2930425;chr11:2930587-2937851		chr11:2930426-2930586			100.00	77.78	89.47	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	93.33	100.00	NA	100.00	NA	100.00	100.00	NA	NA	91.30	NA	NA	100.00	94.74	NA	91.67	NA	94.44	100.00	72.73	NA	100.00	92.86	100.00	100.00	0.00	0.271667	0.709176
N	alternative_acceptor	SCYL1	chr11	+	chr11:65303806-65304056;chr11:65303806-65304154;chr11:65303806-65304061	chr11:65303806-65304188		chr11:65304057-65304061;chr11:65304062-65304154;chr11:65304155-65304188	chr11:65304061-65304062;chr11:65304154-65304155;chr11:65304188-65304189		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	ILK	chr11	+	chr11:6625053-6625409;chr11:6625053-6625477	chr11:6625053-6625455		chr11:6625410-6625455;chr11:6625456-6625477	chr11:6625455-6625456;chr11:6625477-6625478		88.68	83.33	81.82	NA	85.71	NA	77.05	78.15	68.18	62.16	69.08	57.45	82.28	72.13	81.33	66.67	71.03	69.05	NA	77.08	76.00	77.78	84.29	75.00	NA	83.61	80.00	80.00	72.88	80.00	86.36	80.00	90.00	82.14	76.60	80.00	82.81	80.88	-1.93	0.575485	0.800363
N	alternative_acceptor	ADAM28	chr8	+	chr8:24199271-24200501;chr8:24199271-24200613	chr8:24199271-24200185		chr8:24200186-24200501;chr8:24200502-24200613	chr8:24200501-24200502;chr8:24200613-24200614		0.00	2.27	0.83	NA	0.00	NA	0.00	0.00	0.00	6.45	0.00	27.78	0.00	0.00	5.88	0.00	0.00	17.65	0.00	1.37	0.00	0.00	0.00	4.29	NA	0.00	1.29	0.00	0.00	0.00	0.00	1.36	0.00	1.10	1.25	1.52	0.00	0.00	0.00	0.672630	0.880186
K	alternative_donor	SRRT	chr7	+	chr7:100483384-100483483	chr7:100483396-100483483		chr7:100483384-100483395	chr7:100483383-100483384		2.04	2.86	1.82	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	1.96	0.00	NA	0.00	4.00	0.00	3.03	0.00	3.57	1.61	0.00	5.56	2.04	2.50	0.00	1.02	1.02	0.728079	0.889016
K	intron_retention	KLHDC3	chr6	+	chr6:42985434-42985590				chr6:42985433-42985434;chr6:42985590-42985591		4.55	4.00	8.16	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	NA	0.00	NA	20.00	0.00	5.00	0.00	0.00	NA	0.00	8.70	NA	4.17	3.57	0.00	4.00	0.00	-4.00	0.639908	1.000000
K	cassette	NDUFS4	chr5	+	chr5:52899361-52942062	chr5:52899361-52900553;chr5:52900726-52942062		chr5:52900554-52900725			2.13	0.00	0.00	0.00	1.39	0.00	0.00	4.26	2.17	2.63	2.22	3.23	1.23	6.00	3.39	1.47	2.13	2.53	2.22	2.33	2.67	0.00	2.78	2.22	0.00	3.77	1.89	2.38	1.59	4.35	0.00	0.00	1.79	1.89	1.79	1.37	0.61	3.05	2.43	0.049622	0.564103
K	cassette	EIF4A1	chr17	+	chr17:7481235-7481659	chr17:7481235-7481437;chr17:7481563-7481659		chr17:7481438-7481562			92.60	92.53	91.82	95.76	94.48	95.88	99.71	99.54	100.00	99.71	99.36	100.00	100.00	99.19	98.98	99.10	99.39	99.36	92.31	89.00	94.31	95.63	93.93	96.36	95.94	96.74	95.95	98.18	98.04	98.50	79.17	80.20	84.25	94.47	93.35	96.19	94.23	94.67	0.43	0.729582	0.905819
N	alternative_first_exon	CFLAR	chr2	+	chr2:201995704-201997751,chr2:201997301-201997751,chr2:201994731-201997751,chr2:201997645-201997751,chr2:201997549-201997751,chr2:201996942-201997751,chr2:201997597-201997751;chr2:201983625-201997751;chr2:201997574-201997751;chr2:201994870-201997751	chr2:201981205-201997751	chr2:201983214-201983624;chr2:201997502-201997573;chr2:201994226-201994869	chr2:201980827-201981204			1.49	0.00	2.09	0.00	0.00	1.45	2.53	0.94	0.67	0.36	3.57	0.52	0.00	0.32	0.34	0.00	4.23	0.52	10.00	2.63	2.08	0.00	2.63	0.18	9.09	1.53	1.01	0.91	0.00	0.26	1.40	3.41	10.00	1.10	1.41	0.46	5.81	1.44	-4.37	0.113091	0.284861
N	alternative_acceptor	SCAMP3	chr1	-	chr1:155228704-155230120;chr1:155228684-155230120	chr1:155228746-155230120		chr1:155228684-155228703;chr1:155228704-155228745	chr1:155228683-155228684;chr1:155228703-155228704		100.00	100.00	100.00	81.82	96.67	NA	100.00	96.67	97.87	96.97	97.67	93.33	95.92	100.00	95.92	95.12	100.00	95.00	85.71	92.31	93.94	100.00	97.14	100.00	100.00	94.74	96.97	95.24	100.00	100.00	93.33	100.00	92.59	96.30	97.22	92.68	97.96	95.70	-2.26	0.865940	0.954648
N	alternative_acceptor	EZH2	chr7	-	chr7:148506248-148506401	chr7:148506263-148506401		chr7:148506248-148506262	chr7:148506247-148506248		20.00	2.86	11.69	8.77	0.00	3.85	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.88	2.22	2.04	4.17	5.47	36.36	2.27	3.92	0.00	0.00	1.71	6.52	2.47	9.09	2.86	0.00	4.31	2.86	3.58	0.72	0.611496	0.853341
N	alternative_acceptor	PI4KA	chr22	-	chr22:21067260-21067568;chr22:21067284-21067568	chr22:21067086-21067568		chr22:21067086-21067259;chr22:21067260-21067283	chr22:21067085-21067086;chr22:21067259-21067260		80.00	92.31	82.35	NA	100.00	NA	100.00	100.00	NA	100.00	94.74	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	90.00	100.00	87.88	100.00	NA	100.00	82.35	100.00	100.00	100.00	81.82	84.21	84.62	88.46	87.10	100.00	96.16	100.00	3.84	0.763043	0.912836
K	intron_retention	SMG9	chr19	-	chr19:44237886-44238540				chr19:44237885-44237886;chr19:44238540-44238541		0.00	0.00	8.16	0.00	3.92	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	3.23	0.00	3.70	1.79	5.00	14.29	0.00	4.00	4.44	1.92	1.54	0.00	7.41	7.69	3.23	3.70	5.00	0.00	0.00	0.00	0.498224	1.000000
K	intron_retention		chr14	+	chr14:24592287-24592383				chr14:24592286-24592287;chr14:24592383-24592384		6.25	8.33	4.55	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	2.78	0.00	0.00	0.00	0.00	5.88	3.03	7.14	6.45	0.00	0.00	4.35	5.26	0.00	2.63	5.00	13.51	5.77	6.25	0.00	3.33	2.38	0.93	5.12	4.19	0.808622	1.000000
N	alternative_acceptor	PPM1N	chr19	+	chr19:50885432-50885787	chr19:50885432-50885712		chr19:50885713-50885787	chr19:50885787-50885788		100.00	100.00	100.00	100.00	100.00	98.31	100.00	100.00	100.00	93.55	100.00	100.00	95.74	100.00	100.00	97.92	97.37	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	0.00	0.363217	0.709013
K	alternative_donor	PSMB10	chr16	-	chr16:67968852-67969322	chr16:67968852-67969198		chr16:67969199-67969322	chr16:67969322-67969323		2.62	2.22	5.56	2.84	1.69	1.23	0.62	1.06	1.95	1.01	0.89	2.27	1.06	1.82	1.72	1.42	1.92	2.08	0.64	1.62	1.32	2.27	1.80	5.80	1.09	1.33	1.82	5.61	2.65	2.88	2.14	2.54	1.75	6.06	1.75	2.81	1.08	1.72	0.65	0.154028	0.563271
K	cassette	PTPMT1	chr11	+	chr11:47587539-47593022	chr11:47587539-47591251;chr11:47591444-47593022		chr11:47591252-47591443			73.91	78.76	82.14	60.53	58.43	68.97	67.18	65.12	80.23	50.00	50.00	57.14	65.94	75.00	85.71	66.36	52.99	50.00	69.07	72.34	65.03	66.67	76.00	70.97	72.55	85.00	77.50	78.57	65.15	75.00	75.00	80.00	59.83	71.70	68.57	71.88	68.12	74.45	6.33	0.166359	0.709176
N	alternative_acceptor	TCIRG1	chr11	+	chr11:67811121-67811264;chr11:67811121-67811280	chr11:67811121-67811311		chr11:67811265-67811280;chr11:67811281-67811311	chr11:67811280-67811281;chr11:67811311-67811312		6.21	0.00	12.66	9.09	0.00	NA	0.00	1.40	3.33	1.11	2.92	0.00	2.80	3.27	3.45	5.08	4.72	0.00	9.09	10.08	4.65	12.50	10.13	5.00	0.00	9.49	8.26	9.09	5.88	13.04	13.64	12.94	21.74	12.00	12.82	11.39	1.40	7.85	6.45	0.674931	0.880186
N	alternative_acceptor	METTL13	chr1	+	chr1:171763668-171765621	chr1:171763668-171764569		chr1:171764570-171765621	chr1:171765621-171765622		7.69	2.38	11.54	0.00	0.00	0.00	3.23	0.00	6.25	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	3.33	10.00	3.33	7.14	8.82	16.67	0.00	9.09	10.00	0.00	3.23	0.00	5.88	5.00	0.00	7.14	4.35	7.69	1.19	7.69	6.50	0.043786	0.570243
N	jcn_only_AA		chr1	+	chr1:989932-990756;chr1:989932-990445	chr1:989932-990203		chr1:990204-990445;chr1:990446-990756	chr1:990445-990446;chr1:990756-990757		89.81	75.00	90.16	82.76	90.91	85.29	100.00	100.00	99.12	100.00	100.00	91.30	100.00	100.00	99.25	100.00	100.00	100.00	86.67	95.06	93.33	83.33	92.50	93.75	100.00	96.39	97.37	100.00	95.83	92.11	97.73	96.92	91.67	100.00	85.71	98.06	95.84	97.06	1.22	0.367010	0.663989
K	intron_retention	COMMD3,COMMD3-BMI1	chr10	+	chr10:22606925-22607033				chr10:22606924-22606925;chr10:22607033-22607034		2.56	0.00	1.45	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	NA	0.00	3.33	0.00	0.00	0.00	7.69	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.759503	1.000000
N	alternative_donor	ARRB2	chr17	+	chr17:4620572-4620979	chr17:4620880-4620979		chr17:4620572-4620879	chr17:4620571-4620572		3.11	4.29	4.25	0.00	2.10	NA	0.97	0.56	1.40	0.00	0.31	0.00	1.03	0.68	2.82	0.76	0.76	0.00	0.00	3.82	3.12	0.00	1.70	0.00	10.42	4.26	7.02	3.70	4.14	2.00	1.12	4.05	1.79	1.44	1.32	0.73	1.41	2.12	0.71	0.646985	0.840743
N	cassette	IRF3	chr19	-	chr19:50166516-50167930;chr19:50166516-50168887;chr19:50166516-50168891	chr19:50166516-50166599;chr19:50166772-50167930,chr19:50166772-50168887,chr19:50166772-50168891		chr19:50166600-50166771			96.15	92.50	95.35	NA	96.43	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.56	NA	100.00	NA	100.00	88.24	96.77	NA	92.86	NA	100.00	95.24	95.92	NA	100.00	NA	100.00	89.47	95.83	NA	95.83	100.00	100.00	98.08	-1.92	0.542855	0.813839
K	intron_retention	TBRG4	chr7	-	chr7:45141670-45141945				chr7:45141669-45141670;chr7:45141945-45141946		NA	8.82	7.41	7.14	2.44	0.00	0.00	0.00	0.00	0.00	0.00	6.67	2.70	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	6.06	7.69	8.00	0.00	NA	0.00	5.00	5.56	3.57	0.00	0.00	7.14	0.00	12.50	6.45	1.35	0.00	-1.35	0.444590	1.000000
K	intron_retention	CALM3	chr19	+	chr19:47111585-47112180				chr19:47111584-47111585;chr19:47112180-47112181		75.93	74.37	86.96	74.31	74.87	77.82	63.98	77.50	68.42	67.65	60.91	62.71	69.59	72.22	76.47	70.51	59.88	58.67	55.71	56.06	61.92	64.38	64.80	70.10	77.93	75.81	79.01	64.56	65.98	74.13	59.77	68.60	61.13	71.43	74.42	78.51	66.78	74.02	7.23	0.846149	1.000000
K	intron_retention		chr1	-	chr1:153911522-153912064				chr1:153911521-153911522;chr1:153912064-153912065		4.55	28.57	5.41	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	3.70	0.00	0.00	NA	4.76	NA	9.09	3.85	0.00	20.00	0.00	3.23	0.00	0.00	NA	0.00	0.00	NA	3.45	3.12	0.00	10.00	1.22	-8.78	0.772096	1.000000
N	alternative_donor	FGD2	chr6	+	chr6:36993106-36993567;chr6:36992570-36993567	chr6:36990147-36993567		chr6:36990147-36992569;chr6:36992570-36993105	chr6:36990146-36990147;chr6:36992569-36992570		93.38	91.43	NA	NA	90.91	NA	95.00	95.65	100.00	100.00	95.24	96.00	95.38	95.56	94.74	91.30	94.59	92.98	80.00	92.71	NA	NA	92.86	93.02	85.71	95.62	NA	90.32	91.67	93.65	97.26	100.00	92.00	84.21	90.00	93.50	91.72	95.59	3.88	0.091965	0.479695
N	cassette	STAT6	chr12	-	chr12:57502083-57504911;chr12:57502083-57504892	chr12:57502083-57503723;chr12:57503894-57504911,chr12:57503894-57504892		chr12:57503724-57503893			4.65	0.00	4.41	NA	NA	NA	3.30	5.15	7.77	13.64	11.76	16.28	6.12	5.11	10.47	14.04	16.00	20.00	NA	0.00	NA	4.55	2.22	6.82	0.00	6.25	0.00	5.26	0.00	11.11	0.00	2.78	NA	6.25	3.03	10.96	1.65	4.88	3.23	0.551529	0.820124
K	jcn_only_AA	ANTXR1,HTRA2	chr2	+	chr2:74758499-74758723	chr2:74758499-74758693		chr2:74758694-74758723	chr2:74758723-74758724		0.00	0.00	0.00	0.00	4.76	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	9.09	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.391002	0.663989
N	alternative_first_exon	AC135048.13,ORAI3	chr16	+	chr16:30964653-30967520;chr16:30958270-30967520;chr16:30964782-30967520	chr16:30960839-30967520	chr16:30958051-30958269;chr16:30964506-30964781	chr16:30960387-30960838			18.75	27.71	19.35	38.46	30.61	40.00	15.22	11.76	7.69	33.33	17.07	NA	16.98	5.88	11.54	27.27	10.81	NA	20.41	29.63	27.03	41.67	25.00	33.33	23.53	13.33	25.49	50.00	37.78	40.00	23.81	27.42	35.59	29.17	21.21	34.38	21.97	16.04	-5.93	0.226041	0.431093
K	intron_retention		chr3	+	chr3:50154605-50154682				chr3:50154604-50154605;chr3:50154682-50154683		9.79	10.82	5.61	2.33	7.10	0.00	1.79	1.39	2.67	0.00	8.06	0.00	5.56	0.00	5.21	2.25	1.56	0.00	7.62	6.21	8.33	7.32	7.69	5.71	8.77	5.23	7.25	5.17	5.81	6.17	14.47	9.69	11.57	8.84	6.86	5.71	8.20	5.72	-2.47	0.868925	1.000000
K	intron_retention		chr3	+	chr3:52537557-52537787				chr3:52537556-52537557;chr3:52537787-52537788		2.90	9.61	3.17	NA	7.69	0.00	0.55	0.00	0.00	0.00	0.22	0.00	1.10	0.00	0.00	0.00	0.35	0.00	15.22	4.08	NA	0.00	2.75	0.38	12.66	0.00	3.39	0.00	3.76	0.00	0.00	0.00	9.72	0.00	1.42	0.00	9.66	0.00	-9.66	0.138335	1.000000
N	alternative_acceptor	INTS9	chr8	-	chr8:28625840-28627405;chr8:28625894-28627405	chr8:28627265-28627405		chr8:28625840-28625893;chr8:28625894-28627264	chr8:28625839-28625840;chr8:28625893-28625894		8.70	3.33	6.25	NA	0.00	NA	0.00	7.69	0.00	5.26	2.63	NA	4.76	0.00	6.67	0.00	3.70	NA	0.00	5.00	4.76	7.14	3.23	NA	0.00	4.35	5.00	5.88	5.88	0.00	4.55	4.76	4.17	5.00	4.76	5.56	1.67	4.78	3.11	0.084554	0.585944
K	alternative_last_exon	FKBP11	chr12	-	chr12:49315985-49317564	chr12:49317388-49317564	chr12:49315742-49315984	chr12:49316909-49317387			17.39	6.00	28.00	NA	5.56	0.00	NA	NA	NA	NA	NA	NA	NA	28.57	NA	NA	NA	NA	1.96	36.36	2.63	NA	20.00	NA	1.67	38.46	21.05	NA	NA	NA	14.29	25.00	2.27	NA	40.00	46.67	2.12	28.57	26.45	0.006877	0.157460
N	jcn_only_AA	FBXW5	chr9	-	chr9:139835930-139835988;chr9:139835855-139835988	chr9:139835916-139835988		chr9:139835855-139835915;chr9:139835916-139835929	chr9:139835854-139835855;chr9:139835915-139835916		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.33	100.00	100.00	97.67	97.85	100.00	94.55	92.86	100.00	97.83	100.00	94.74	100.00	100.00	93.22	97.80	100.00	94.87	100.00	94.83	100.00	98.91	-1.09	0.141789	0.663989
K	intron_retention	ZDHHC7	chr16	-	chr16:85008485-85009018				chr16:85008484-85008485;chr16:85009018-85009019		82.54	89.47	92.31	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.39	NA	92.63	100.00	100.00	100.00	93.75	NA	89.19	92.86	93.42	100.00	95.24	NA	100.00	94.74	92.68	89.29	100.00	95.00	100.00	93.98	91.20	96.30	100.00	100.00	91.91	97.37	5.46	0.964045	1.000000
K	intron_retention		chr12	-	chr12:9094537-9095011				chr12:9094536-9094537;chr12:9095011-9095012		3.08	0.00	5.92	0.00	1.30	0.00	0.49	0.31	0.74	0.70	0.80	0.25	1.04	0.66	2.52	0.95	0.92	0.39	0.00	4.81	1.45	4.20	1.55	2.52	0.00	2.82	3.47	1.91	1.65	0.72	3.12	3.94	0.00	4.22	4.03	3.09	0.00	2.95	2.95	0.060832	1.000000
N	jcn_only_AA	RASGRP3	chr2	+	chr2:33784098-33787522;chr2:33784098-33787795;chr2:33784098-33786700;chr2:33784098-33793050	chr2:33784098-33809963		chr2:33786701-33787522;chr2:33787523-33787795;chr2:33787796-33793050;chr2:33793051-33809963	chr2:33787522-33787523;chr2:33787795-33787796;chr2:33793050-33793051;chr2:33809963-33809964		0.00	0.00	NA	0.00	0.00	0.00	3.28	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.69	NA	3.12	NA	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.570836	0.796382
K	intron_retention	HTRA2	chr2	+	chr2:74758830-74758982				chr2:74758829-74758830;chr2:74758982-74758983		7.14	1.75	4.17	0.00	8.11	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	6.25	6.67	0.00	9.09	10.00	0.00	25.00	0.00	0.00	0.00	7.14	0.00	18.75	6.06	10.71	0.00	3.85	0.00	4.00	3.33	-0.67	0.728243	1.000000
N	cassette	MRPL13	chr8	-	chr8:121437607-121455424;chr8:121437607-121457307	chr8:121437607-121444269;chr8:121444364-121455424,chr8:121444364-121457307		chr8:121444270-121444363			100.00	100.00	94.87	100.00	96.88	NA	100.00	94.44	100.00	100.00	100.00	100.00	97.87	100.00	97.22	100.00	100.00	100.00	100.00	95.24	100.00	100.00	96.36	100.00	NA	100.00	97.22	100.00	100.00	95.83	94.12	93.55	96.30	100.00	100.00	94.59	100.00	97.62	-2.38	0.315067	0.709176
N	cassette	DAP3	chr1	+	chr1:155697530-155701146	chr1:155697530-155698998;chr1:155699158-155701146		chr1:155698999-155699157			100.00	100.00	100.00	94.12	98.11	100.00	100.00	100.00	100.00	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	0.00	0.651238	0.871482
K	intron_retention		chr19	+	chr19:1272051-1274305				chr19:1272050-1272051;chr19:1274305-1274306		48.44	45.83	56.63	70.30	46.71	79.35	63.64	54.55	39.29	NA	58.33	NA	56.00	69.23	64.10	42.86	46.67	NA	46.48	57.69	45.86	64.44	46.32	82.05	52.09	66.67	65.05	62.50	49.37	69.35	31.71	42.96	31.62	70.45	63.64	76.62	49.28	56.12	6.84	0.856151	1.000000
N	cassette	THEMIS2	chr1	+	chr1:28199177-28206154;chr1:28199177-28211805	chr1:28199177-28203098;chr1:28203240-28211805,chr1:28203240-28206154		chr1:28203099-28203239			92.86	93.44	91.25	NA	97.56	NA	95.04	97.08	95.30	95.08	97.79	97.35	99.03	97.39	98.90	97.78	97.52	100.00	100.00	94.84	95.65	100.00	95.83	97.62	NA	93.14	91.19	98.51	97.44	98.33	92.56	92.99	80.77	100.00	97.96	97.56	95.04	93.99	-1.05	0.793080	0.936947
N	jcn_only_AA	CPNE1	chr20	-	chr20:34214723-34215201;chr20:34214749-34215201;chr20:34214775-34215201	chr20:34214726-34215201		chr20:34214723-34214725;chr20:34214726-34214748;chr20:34214749-34214774	chr20:34214722-34214723;chr20:34214725-34214726;chr20:34214748-34214749		98.57	100.00	100.00	100.00	99.22	98.67	24.49	31.82	29.27	33.33	22.73	18.18	97.22	96.88	97.06	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	100.00	100.00	98.82	98.98	100.00	100.00	100.00	96.83	100.00	100.00	100.00	100.00	100.00	100.00	97.72	-2.28	0.990608	0.997790
N	alternative_acceptor	NARF	chr17	+	chr17:80441656-80442688;chr17:80441656-80442133	chr17:80441656-80442144		chr17:80442134-80442144;chr17:80442145-80442688	chr17:80442144-80442145;chr17:80442688-80442689		7.41	6.86	10.24	18.75	5.71	10.00	0.00	2.78	2.33	0.00	2.86	6.67	2.27	4.17	8.06	7.14	2.56	10.00	5.48	9.21	2.54	8.33	8.82	13.89	5.95	10.81	9.73	12.50	9.09	12.50	6.45	7.25	4.94	10.34	8.82	16.67	5.21	6.93	1.72	0.147435	0.651394
N	jcn_only_AD	HMGB2	chr4	-	chr4:174254821-174255422;chr4:174254821-174255007	chr4:174254821-174255396		chr4:174255008-174255396;chr4:174255397-174255422	chr4:174255396-174255397;chr4:174255422-174255423		0.00	0.00	16.67	NA	NA	NA	8.33	13.64	10.00	13.33	7.02	NA	11.39	9.52	13.95	17.39	8.70	NA	NA	15.38	NA	NA	NA	NA	0.00	31.25	5.26	NA	0.00	NA	16.67	0.00	NA	NA	0.00	NA	4.17	14.51	10.35	0.099770	0.639657
N	alternative_acceptor	SYMPK	chr19	-	chr19:46319873-46320055;chr19:46319836-46320055	chr19:46319832-46320055		chr19:46319832-46319835;chr19:46319836-46319872	chr19:46319831-46319832;chr19:46319835-46319836		0.00	0.00	0.00	0.00	3.03	6.06	6.25	0.00	0.00	0.00	0.00	NA	0.00	0.00	3.45	NA	0.00	NA	3.03	0.00	0.00	NA	0.00	NA	0.00	NA	3.70	NA	0.00	0.00	0.00	0.00	4.48	NA	0.00	0.00	1.51	0.00	-1.51	0.093023	0.597092
N	jcn_only_AA	AKT1S1	chr19	-	chr19:50373318-50374803	chr19:50374408-50374803		chr19:50373318-50374407	chr19:50373317-50373318		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	TTI2	chr8	-	chr8:33356796-33357845				chr8:33356795-33356796;chr8:33357845-33357846		0.00	7.14	9.09	6.25	6.90	0.00	25.00	7.69	26.32	35.48	38.46	27.78	37.50	NA	27.27	51.28	42.86	35.71	0.00	0.00	0.00	44.00	29.63	42.86	0.00	5.88	7.14	26.67	13.04	8.33	0.00	6.67	2.63	39.13	28.00	28.12	4.88	0.00	-4.88	0.404718	1.000000
K	jcn_only_AA	TNK2	chr3	-	chr3:195597276-195599146;chr3:195597077-195599146	chr3:195597250-195599146		chr3:195597077-195597249;chr3:195597250-195597275	chr3:195597076-195597077;chr3:195597249-195597250		1.85	16.00	3.70	NA	NA	NA	0.00	5.56	4.44	NA	0.00	NA	0.00	0.00	2.22	0.00	0.00	NA	NA	5.66	NA	NA	8.00	0.00	0.00	5.17	0.00	0.00	0.00	NA	0.00	0.00	NA	11.76	NA	3.85	0.00	3.51	3.51	0.830182	0.932795
K	intron_retention	GPS1	chr17	+	chr17:80013972-80014161				chr17:80013971-80013972;chr17:80014161-80014162		3.57	2.99	6.06	10.00	4.76	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	4.17	7.69	0.00	0.00	0.00	0.00	0.00	5.26	5.88	7.32	8.57	0.00	7.50	3.03	1.50	0.00	-1.50	0.633240	1.000000
K	cassette	SAE1	chr19	+	chr19:47673181-47706927	chr19:47673181-47700489;chr19:47700635-47706927		chr19:47700490-47700634			90.00	91.67	86.54	91.67	93.10	NA	92.59	95.24	94.29	93.33	96.55	100.00	95.29	90.91	90.70	100.00	97.33	100.00	100.00	90.00	94.12	90.91	97.67	100.00	NA	100.00	87.50	100.00	94.74	100.00	100.00	90.62	100.00	95.92	95.24	91.67	95.29	93.07	-2.22	0.570689	0.830383
N	alternative_acceptor	ATXN2L	chr16	+	chr16:28846721-28846866;chr16:28846721-28846875;chr16:28846721-28846869	chr16:28846721-28846933		chr16:28846867-28846869;chr16:28846870-28846875;chr16:28846876-28846933	chr16:28846869-28846870;chr16:28846875-28846876;chr16:28846933-28846934		0.00	0.00	0.00	0.00	7.69	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	NA	7.14	0.00	5.88	0.00	6.25	0.00	0.00	4.65	0.00	0.00	0.00	4.35	6.25	25.00	12.90	8.00	9.76	0.00	0.00	0.00	0.578454	0.839743
N	jcn_only_AD	CTSL	chr9	+	chr9:90341314-90342508;chr9:90342311-90342508;chr9:90341165-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341224-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		12.10	16.28	10.81	13.45	12.04	5.88	10.78	9.35	9.34	10.62	9.75	10.37	10.50	9.80	11.65	13.21	10.68	13.33	14.75	13.22	12.83	10.07	11.40	10.94	12.90	8.82	9.37	11.18	9.23	11.07	10.99	11.59	15.28	13.40	13.04	16.46	13.82	10.39	-3.43	0.052062	0.515346
K	cassette	RAN	chr12	+	chr12:131356672-131357380	chr12:131356672-131357128;chr12:131357163-131357380		chr12:131357129-131357162			84.00	100.00	79.41	86.36	72.00	NA	95.56	100.00	93.33	88.28	91.86	95.00	96.43	100.00	96.43	97.22	94.68	92.31	NA	90.48	84.21	79.79	72.37	84.00	100.00	94.12	85.19	91.43	82.69	92.50	82.35	86.96	60.00	86.67	81.48	93.10	96.43	92.30	-4.13	0.869287	0.954868
K	cassette	RRNAD1	chr1	+	chr1:156703313-156705516	chr1:156703313-156703800;chr1:156704286-156705516		chr1:156703801-156704285			58.33	47.83	77.78	NA	76.92	NA	81.82	100.00	88.89	NA	NA	NA	72.73	100.00	79.17	NA	NA	NA	61.54	64.71	72.73	NA	76.92	NA	NA	78.57	78.12	NA	NA	NA	61.11	60.00	42.86	NA	72.73	NA	61.54	71.64	10.10	0.174161	0.709176
N	cassette	ECI2	chr6	-	chr6:4117686-4125483	chr6:4117686-4119419;chr6:4119510-4125483		chr6:4119420-4119509			100.00	100.00	100.00	100.00	96.49	100.00	97.44	100.00	100.00	95.24	97.37	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	NA	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	97.30	100.00	100.00	100.00	100.00	100.00	0.00	0.174877	0.709176
K	cassette	FMNL1	chr17	+	chr17:43323698-43324233	chr17:43323698-43323871;chr17:43323972-43324233		chr17:43323872-43323971			4.42	1.09	2.82	1.59	1.24	2.56	0.82	1.56	1.70	2.33	0.46	2.63	1.56	1.06	1.38	1.79	2.49	1.54	2.01	3.76	2.56	2.15	1.26	1.79	0.92	3.97	1.28	0.85	0.97	1.27	5.65	4.21	2.18	3.25	1.41	3.52	1.33	3.87	2.54	0.039442	0.500342
N	jcn_only_AD	MYL6	chr12	+	chr12:56554112-56555170;chr12:56554105-56555170	chr12:56554455-56555170					7.00	6.10	5.75	6.17	5.58	5.88	9.79	16.62	7.58	9.24	8.02	9.02	13.52	16.02	8.90	11.11	9.44	9.99	6.04	8.30	5.72	6.39	4.78	6.11	6.81	15.54	6.45	8.02	7.55	8.12	7.16	5.05	5.44	5.59	4.83	6.13	6.46	11.92	5.46	0.134423	0.657607
K	intron_retention	MRPL53	chr2	-	chr2:74699380-74699484				chr2:74699379-74699380;chr2:74699484-74699485		6.38	3.23	6.94	4.92	2.76	4.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.09	1.09	0.00	0.00	4.11	2.44	2.87	5.41	1.30	3.85	3.68	3.70	4.55	4.26	4.12	4.17	8.89	7.69	4.86	5.26	5.17	1.75	3.46	3.07	-0.38	0.979445	1.000000
N	jcn_only_AA	HEXB	chr5	+	chr5:74014189-74014584;chr5:74014189-74014621	chr5:74014189-74014733		chr5:74014585-74014621;chr5:74014622-74014733	chr5:74014621-74014622;chr5:74014733-74014734		3.10	0.00	3.10	3.95	2.83	2.66	0.00	2.84	0.00	1.63	0.00	0.00	1.97	0.00	2.17	2.98	1.67	1.49	6.48	6.62	4.81	2.77	2.87	0.00	0.00	1.77	2.82	3.24	0.00	0.00	5.86	5.14	6.43	3.35	3.05	2.11	0.98	2.97	1.98	0.603362	0.815710
K	cassette	C2orf47	chr2	+	chr2:200824604-200828455	chr2:200824604-200826503;chr2:200826652-200828455		chr2:200826504-200826651			100.00	100.00	100.00	100.00	100.00	93.75	86.67	93.75	100.00	100.00	88.24	84.21	92.31	94.44	96.00	87.88	90.48	88.89	100.00	93.33	100.00	100.00	100.00	90.91	NA	100.00	87.50	92.31	94.12	92.00	84.62	70.83	NA	89.47	100.00	90.32	96.16	94.09	-2.06	0.925552	0.981884
N	jcn_only_AD	SCN1B	chr19	+	chr19:35526916-35530020;chr19:35528259-35530020;chr19:35524644-35530020	chr19:35526051-35530020		chr19:35524644-35526050;chr19:35526051-35526915;chr19:35526916-35528258	chr19:35524643-35524644;chr19:35526050-35526051;chr19:35526915-35526916		1.25	0.00	2.78	5.71	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.12	0.00	0.00	0.00	0.00	0.00	0.00	7.32	0.00	3.33	3.57	4.72	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.231324	0.657607
K	alternative_donor	EXOSC4	chr8	+	chr8:145134925-145135144	chr8:145135053-145135144		chr8:145134925-145135052	chr8:145134924-145134925		93.55	100.00	100.00	95.00	100.00	98.08	93.75	93.75	93.75	100.00	100.00	NA	100.00	100.00	100.00	96.88	100.00	NA	97.14	95.65	98.41	100.00	96.88	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	97.92	100.00	94.74	100.00	98.96	97.83	-1.14	0.568223	0.797216
K	intron_retention		chr5	+	chr5:464528-465225				chr5:464527-464528;chr5:465225-465226		6.45	1.59	6.67	13.33	4.65	25.00	2.70	0.00	0.00	4.76	1.56	NA	2.86	0.00	5.26	0.00	3.70	NA	2.44	3.23	0.00	11.11	6.17	12.50	0.00	0.00	5.26	11.11	8.06	11.76	8.33	5.41	2.38	12.12	7.50	21.74	2.41	1.61	-0.80	0.700672	1.000000
N	jcn_only_AD	OSTF1	chr9	+	chr9:77702912-77732419;chr9:77703643-77732419;chr9:77712188-77732419	chr9:77703652-77732419		chr9:77702912-77703642;chr9:77703643-77703651;chr9:77703652-77712187	chr9:77702911-77702912;chr9:77703642-77703643;chr9:77703651-77703652		3.39	0.00	2.82	0.00	0.00	NA	3.03	3.32	2.55	3.09	4.26	3.14	3.52	3.79	2.23	2.84	1.62	2.94	0.00	3.37	4.00	0.00	4.55	3.33	NA	3.91	4.11	7.14	0.86	2.74	3.96	2.40	0.00	1.98	1.80	2.90	0.00	3.59	3.59	0.044599	0.497155
K	intron_retention	TSTA3	chr8	-	chr8:144695466-144695693				chr8:144695465-144695466;chr8:144695693-144695694		3.12	2.74	3.12	11.11	2.86	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	1.96	5.00	6.82	13.33	5.88	7.69	6.45	0.00	0.00	0.00	6.67	0.00	9.38	8.57	3.77	8.33	3.70	3.23	2.35	3.12	0.77	0.907810	1.000000
N	alternative_acceptor	NDUFA9,RP11-500M8.7	chr12	+	chr12:4764089-4766913	chr12:4764089-4765599		chr12:4765600-4766913	chr12:4766913-4766914		3.85	4.17	5.26	6.67	0.00	0.00	0.00	1.33	1.30	1.15	0.00	0.67	1.14	2.53	1.89	2.06	0.00	1.49	0.00	4.17	3.03	7.50	5.08	17.69	NA	9.21	9.26	8.77	6.82	8.06	5.77	4.41	0.00	6.58	3.12	13.17	0.00	4.01	4.01	0.037335	0.560254
N	jcn_only_AD	RPL15	chr3	+	chr3:23958936-23959340;chr3:23958787-23959340;chr3:23958731-23959340	chr3:23958665-23959340		chr3:23958665-23958730;chr3:23958731-23958786;chr3:23958787-23958935	chr3:23958664-23958665;chr3:23958730-23958731;chr3:23958786-23958787		77.23	91.25	77.78	88.75	89.66	92.86	81.48	77.78	75.61	88.96	90.58	88.34	84.74	74.04	78.32	84.02	90.46	87.04	85.42	79.12	87.64	85.08	89.51	86.42	100.00	73.91	80.00	86.54	88.28	86.90	80.56	84.31	93.18	83.12	76.19	84.06	88.34	77.50	-10.83	0.005265	0.182851
K	cassette	SLC50A1	chr1	+	chr1:155109428-155110454;chr1:155108853-155110454	chr1:155109428-155110036,chr1:155108853-155110036;chr1:155110199-155110454		chr1:155110037-155110198			100.00	100.00	83.72	71.43	78.95	NA	97.44	82.76	87.10	75.93	95.35	85.71	96.00	88.89	81.63	84.78	82.35	80.43	78.57	76.47	84.62	73.91	70.00	60.00	100.00	87.50	82.35	76.19	77.78	80.65	71.43	84.21	90.00	78.95	80.00	83.33	96.72	85.13	-11.59	0.116812	0.709176
N	alternative_acceptor	ADM	chr11	+	chr11:10327646-10327939;chr11:10327646-10327881;chr11:10327646-10327878;chr11:10327646-10327847	chr11:10327646-10327777		chr11:10327778-10327847;chr11:10327848-10327878;chr11:10327879-10327881;chr11:10327882-10327939	chr11:10327847-10327848;chr11:10327878-10327879;chr11:10327881-10327882;chr11:10327939-10327940		2.76	0.00	3.05	2.56	2.70	1.45	0.00	0.29	0.15	0.00	0.00	0.32	0.00	0.34	0.26	0.55	0.00	0.68	NA	2.47	4.79	2.21	2.25	1.64	NA	1.64	1.10	1.74	2.56	2.15	3.35	5.28	9.09	2.93	3.09	1.67	0.00	2.06	2.06	0.853800	0.947480
K	alternative_donor	ZSWIM8	chr10	+	chr10:75559929-75560053	chr10:75559953-75560053		chr10:75559929-75559952	chr10:75559928-75559929		8.11	18.37	13.04	12.50	19.57	NA	21.43	23.81	13.64	10.81	16.67	21.74	29.41	20.00	13.04	20.59	12.31	23.53	12.90	10.61	15.56	17.07	17.91	9.52	15.38	16.36	15.38	19.23	18.42	16.13	12.99	13.33	14.81	19.18	18.18	16.30	16.88	14.68	-2.20	0.346948	0.650093
K	intron_retention		chr3	-	chr3:48663434-48663650				chr3:48663433-48663434;chr3:48663650-48663651		1.16	0.00	5.19	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.76	NA	0.00	NA	2.11	0.00	0.80	NA	2.63	NA	3.00	0.00	2.00	0.00	0.00	0.00	2.33	2.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.587817	1.000000
K	intron_retention	ARHGEF2	chr1	-	chr1:155935204-155935421				chr1:155935203-155935204;chr1:155935421-155935422		0.00	0.00	1.79	NA	NA	NA	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	2.86	0.00	46.15	0.94	3.03	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.26	0.00	0.50	0.00	-0.50	0.622730	1.000000
K	alternative_acceptor	TMEM219	chr16	+	chr16:29973454-29974430	chr16:29973454-29974427		chr16:29974428-29974430	chr16:29974430-29974431		48.68	34.62	44.83	47.06	32.69	56.00	43.42	72.41	68.12	33.33	39.58	68.54	44.16	77.27	65.08	41.94	42.67	64.81	22.50	50.00	30.16	41.67	28.85	62.96	50.00	67.07	30.00	60.87	47.50	69.84	43.08	36.00	30.23	37.50	30.43	61.11	39.02	58.53	19.52	0.012429	0.475629
K	intron_retention	CNOT3	chr19	+	chr19:54657578-54659046				chr19:54657577-54657578;chr19:54659046-54659047		10.00	14.00	4.88	6.82	7.14	4.94	0.00	0.00	0.00	0.00	4.76	0.00	0.00	6.67	0.00	0.00	0.00	0.00	6.35	4.55	9.30	5.88	8.33	0.00	11.36	0.00	14.71	0.00	3.45	2.08	0.00	10.87	8.57	16.67	0.00	6.25	7.46	2.27	-5.19	0.725253	1.000000
N	alternative_acceptor	TRPC4AP	chr20	-	chr20:33591420-33592260;chr20:33591894-33592260	chr20:33592168-33592260		chr20:33591420-33591893;chr20:33591894-33592167	chr20:33591419-33591420;chr20:33591893-33591894		2.14	2.15	2.12	4.76	1.04	0.00	1.09	1.43	1.28	1.32	1.67	1.52	2.33	1.07	2.40	2.94	1.77	4.76	0.00	2.75	3.70	5.77	2.00	5.43	2.86	5.24	2.82	4.11	3.57	4.55	2.55	2.17	0.00	5.05	2.70	6.36	1.62	2.34	0.72	0.183022	0.660713
N	jcn_only_AD	ABRACL	chr6	+	chr6:139349696-139355291;chr6:139354993-139355291;chr6:139350450-139355291;chr6:139349951-139355291	chr6:139350013-139355291		chr6:139349696-139349950;chr6:139349951-139350012;chr6:139350013-139350449;chr6:139350450-139354992	chr6:139349695-139349696;chr6:139349950-139349951;chr6:139350012-139350013;chr6:139350449-139350450		92.86	90.83	100.00	100.00	92.31	100.00	98.53	100.00	100.00	100.00	98.60	100.00	99.00	100.00	98.70	98.65	100.00	100.00	100.00	97.77	98.32	100.00	98.35	100.00	100.00	98.88	100.00	100.00	99.22	100.00	100.00	100.00	100.00	98.54	100.00	100.00	99.50	99.44	-0.06	0.919990	0.958585
K	cassette	PPDPF	chr20	+	chr20:62152248-62152864	chr20:62152248-62152636;chr20:62152717-62152864		chr20:62152637-62152716			96.90	89.11	94.74	91.55	89.86	94.51	96.38	98.80	99.30	97.28	96.84	98.27	96.69	98.82	97.76	97.32	96.89	95.65	88.51	94.77	95.79	89.06	91.26	91.80	83.06	97.03	98.72	93.42	92.26	93.98	96.10	93.90	88.34	94.52	90.53	94.16	88.81	96.97	8.16	0.024721	0.412617
N	alternative_acceptor	METTL9	chr16	+	chr16:21636437-21638265;chr16:21636437-21654396;chr16:21636437-21666550;chr16:21636437-21666547	chr16:21636437-21638267		chr16:21638266-21638267;chr16:21638268-21654396;chr16:21654397-21666547;chr16:21666548-21666550	chr16:21638267-21638268;chr16:21654396-21654397;chr16:21666547-21666548;chr16:21666550-21666551		1.49	3.08	0.51	6.67	4.26	15.38	2.82	8.70	1.35	9.76	13.64	13.79	5.66	8.33	2.27	7.14	12.00	13.33	15.79	4.08	4.88	5.88	3.64	8.33	25.00	5.88	1.41	7.41	12.77	11.11	2.38	2.74	3.33	6.38	6.82	6.00	4.50	4.98	0.49	0.332729	0.709013
K	jcn_only_AA	ZBTB17	chr1	-	chr1:16268916-16269023	chr1:16268937-16269023		chr1:16268916-16268936	chr1:16268915-16268916		0.00	0.00	1.56	8.08	8.00	6.70	0.00	5.88	5.26	9.43	12.50	5.13	5.26	14.29	6.85	9.30	0.00	4.17	0.00	8.51	6.42	3.85	2.78	6.38	0.00	8.16	6.17	3.77	0.00	2.80	1.49	3.66	8.82	0.00	0.00	4.40	0.00	7.02	7.02	0.158178	0.663989
N	cassette	GMFG	chr19	-	chr19:39819714-39823716;chr19:39819714-39825900;chr19:39808999-39825900;chr19:39808999-39826613	chr19:39819714-39820183,chr19:39808999-39820183;chr19:39820267-39825900,chr19:39820267-39823716,chr19:39820267-39826613		chr19:39820184-39820266			94.71	88.67	94.31	88.61	90.42	86.28	97.25	97.83	98.10	97.17	97.35	96.75	97.30	98.94	97.30	97.41	96.94	95.78	91.93	94.29	94.48	91.67	93.20	92.61	87.42	96.62	91.82	95.22	95.32	93.45	92.31	92.96	89.38	90.45	92.78	93.20	90.66	95.66	5.01	0.100624	0.680881
K	intron_retention	APRT	chr16	-	chr16:88876965-88877957				chr16:88876964-88876965;chr16:88877957-88877958		7.69	2.36	8.70	5.26	4.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.40	4.55	1.23	1.71	0.71	0.00	3.12	NA	3.61	8.93	4.42	4.88	3.19	0.00	5.88	3.92	5.49	1.52	NA	3.23	3.16	1.79	4.40	3.57	2.74	2.27	-0.47	0.582050	1.000000
N	jcn_only_AD	RP4-583P15.15,ZGPAT	chr20	+	chr20:62365128-62366056;chr20:62365092-62366056;chr20:62365157-62366056	chr20:62365065-62366056		chr20:62365065-62365091;chr20:62365092-62365127;chr20:62365128-62365156	chr20:62365064-62365065;chr20:62365091-62365092;chr20:62365127-62365128		11.32	18.75	15.22	13.64	10.26	9.23	7.14	11.43	13.51	13.21	11.11	10.34	15.00	9.09	8.82	14.89	6.45	11.54	3.70	6.06	7.50	8.00	9.09	5.88	7.14	6.45	5.77	9.30	7.41	6.56	6.67	8.51	6.25	8.57	17.24	6.76	7.14	7.88	0.74	0.668426	0.830571
K	jcn_only_AD	NDUFA3	chr19	+	chr19:54606268-54606421;chr19:54606197-54606421	chr19:54606207-54606421		chr19:54606197-54606206;chr19:54606207-54606267	chr19:54606196-54606197;chr19:54606206-54606207		0.00	0.51	5.08	0.00	0.61	0.74	1.74	0.00	4.65	1.92	0.00	2.17	0.00	0.00	2.50	0.00	0.00	1.56	1.17	0.00	1.11	0.00	0.00	3.70	0.00	4.00	0.00	0.00	0.00	0.00	1.59	1.02	1.44	0.00	0.00	0.00	0.84	0.00	-0.84	0.872836	0.936665
K	intron_retention	PLXNB2	chr22	-	chr22:50717441-50718058				chr22:50717440-50717441;chr22:50718058-50718059		5.39	3.77	5.33	0.00	3.06	NA	0.68	0.00	0.00	0.00	0.00	0.00	0.66	1.02	0.68	0.00	0.52	0.00	4.29	5.62	5.74	2.56	3.72	3.70	7.02	4.67	4.18	0.00	3.38	0.00	3.76	6.27	5.10	4.00	4.85	2.13	4.03	4.21	0.18	0.997705	1.000000
N	cassette	CLN3	chr16	-	chr16:28497972-28503034;chr16:28500708-28503034	chr16:28497972-28502802,chr16:28500708-28502802;chr16:28502882-28503034		chr16:28502803-28502881			95.65	100.00	92.31	NA	90.91	NA	97.83	100.00	100.00	96.43	93.48	100.00	95.00	100.00	NA	100.00	93.55	87.50	NA	100.00	NA	93.33	92.50	100.00	100.00	94.59	100.00	92.59	92.00	100.00	96.30	91.67	NA	100.00	100.00	98.04	98.91	98.15	-0.76	0.782284	0.935383
N	alternative_acceptor	ITFG1	chr16	-	chr16:47249121-47252778;chr16:47196513-47252778	chr16:47196576-47252778		chr16:47196513-47196575;chr16:47196576-47249120	chr16:47196512-47196513;chr16:47196575-47196576		92.31	97.56	94.12	NA	93.10	NA	91.67	96.30	92.68	92.00	90.70	89.66	91.49	95.45	97.14	90.00	90.62	85.71	94.12	91.18	97.37	100.00	94.87	100.00	100.00	92.31	92.86	100.00	96.88	94.44	92.59	95.74	94.12	93.55	89.66	92.86	94.12	92.45	-1.67	0.384664	0.709013
K	intron_retention		chr22	-	chr22:50968990-50969140				chr22:50968989-50968990;chr22:50969140-50969141		15.38	48.00	22.35	58.70	55.56	59.62	23.08	21.69	35.48	NA	26.67	NA	24.39	32.11	31.68	52.63	31.82	30.77	40.83	28.00	24.53	42.86	46.67	58.33	40.76	16.17	21.28	55.81	48.15	41.51	22.22	21.77	39.13	46.43	41.67	50.88	39.95	21.95	-17.99	0.177840	1.000000
K	intron_retention	MS4A6A	chr11	-	chr11:59939727-59940500				chr11:59939726-59939727;chr11:59940500-59940501		19.57	14.15	23.91	1.49	4.81	1.55	28.26	28.81	20.00	9.89	17.34	10.20	33.02	26.67	NA	8.24	15.44	8.04	15.09	22.41	16.13	2.86	8.22	3.30	10.14	15.62	23.26	5.19	11.48	4.97	8.70	30.00	13.12	4.74	7.85	4.13	14.62	20.99	6.37	0.431648	1.000000
K	intron_retention	FBRS	chr16	+	chr16:30679965-30680092				chr16:30679964-30679965;chr16:30680092-30680093		4.17	0.00	6.96	NA	0.00	NA	0.00	1.41	0.00	0.00	1.23	0.00	0.00	0.00	1.01	0.00	0.00	0.00	NA	5.49	3.70	15.22	13.04	8.82	17.65	5.62	9.73	0.00	3.45	8.33	9.59	9.94	14.29	6.17	9.72	8.65	0.00	4.83	4.83	0.934018	1.000000
K	cassette	NECAP2	chr1	+	chr1:16778511-16785336	chr1:16778511-16782312;chr1:16782389-16785336		chr1:16782313-16782388			97.14	97.14	95.42	100.00	96.55	95.45	96.57	95.87	94.92	97.78	97.79	97.41	96.08	96.19	96.74	98.72	97.41	95.73	100.00	99.13	93.33	100.00	93.83	96.08	100.00	96.72	98.17	94.29	96.72	95.16	95.92	96.00	97.37	95.83	93.07	97.84	97.25	96.45	-0.80	0.261919	0.709176
K	intron_retention	CAMK1	chr3	-	chr3:9802453-9803144				chr3:9802452-9802453;chr3:9803144-9803145		2.22	0.34	5.13	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.39	0.00	0.33	0.00	0.00	0.00	0.43	0.00	0.99	0.00	0.00	0.00	2.78	0.00	2.81	0.00	4.26	0.00	1.02	0.00	0.00	6.90	0.00	0.00	3.12	0.00	0.34	0.00	-0.34	0.734695	1.000000
N	jcn_only_AD	PPP6R2	chr22	+	chr22:50881753-50882294;chr22:50879385-50882294	chr22:50879456-50882294		chr22:50879385-50879455;chr22:50879456-50881752	chr22:50879384-50879385;chr22:50879455-50879456		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	NA	97.70	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	94.44	96.97	100.00	100.00	100.00	100.00	100.00	0.00	0.825519	0.922490
N	cassette	DPP3	chr11	+	chr11:66264949-66276549	chr11:66264949-66272082;chr11:66272246-66276549		chr11:66272083-66272245			95.24	100.00	92.31	100.00	100.00	84.62	100.00	100.00	96.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.14	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	91.30	100.00	86.11	100.00	96.97	93.33	100.00	100.00	0.00	0.979895	0.995133
K	cassette	ESYT1	chr12	+	chr12:56532798-56536361	chr12:56532798-56536068;chr12:56536210-56536361		chr12:56536069-56536209			96.15	88.00	100.00	NA	80.95	NA	96.34	100.00	100.00	100.00	93.06	100.00	97.40	100.00	100.00	96.55	93.42	100.00	100.00	100.00	92.31	94.44	92.31	100.00	NA	100.00	95.65	NA	95.00	100.00	NA	100.00	NA	96.55	93.10	92.00	96.87	100.00	3.13	0.242396	0.709176
K	cassette	RHOT2	chr16	+	chr16:718700-720122	chr16:718700-719552;chr16:719607-720122		chr16:719553-719606			76.00	76.47	58.82	NA	NA	NA	91.67	93.33	78.26	94.74	95.83	100.00	91.89	85.71	74.07	88.89	92.31	100.00	NA	67.86	NA	80.00	74.19	72.22	78.57	80.95	75.00	91.67	86.36	NA	81.25	58.97	63.64	79.17	71.88	85.29	78.57	81.10	2.53	0.951247	0.987421
K	alternative_first_exon	RNF145	chr5	-	chr5:158630665-158634482;chr5:158630665-158636238	chr5:158630665-158634895	chr5:158634483-158634642;chr5:158636239-158636559	chr5:158634896-158635081			3.70	4.17	0.00	0.00	0.00	0.00	0.00	0.00	1.79	2.50	3.64	2.27	0.00	3.57	3.28	0.00	0.00	0.00	NA	7.69	5.88	6.67	0.00	0.00	0.00	3.57	0.00	4.55	0.00	7.69	0.00	3.33	0.00	0.00	0.00	2.63	0.00	3.57	3.57	0.152742	0.348565
N	alternative_donor	CYTH4	chr22	+	chr22:37696230-37696947;chr22:37695295-37696947	chr22:37695348-37696947		chr22:37695295-37695347;chr22:37695348-37696229	chr22:37695294-37695295;chr22:37695347-37695348		97.18	88.89	93.62	NA	100.00	NA	98.72	98.81	97.41	97.67	98.57	98.98	97.22	99.01	97.98	97.14	98.88	97.56	NA	98.25	95.00	NA	98.25	95.83	88.89	96.18	95.27	95.56	96.77	97.44	96.88	96.81	NA	94.12	95.24	97.09	93.06	97.72	4.66	0.202511	0.571503
K	intron_retention	CDK9	chr9	+	chr9:130550972-130551456				chr9:130550971-130550972;chr9:130551456-130551457		3.70	0.00	5.71	3.33	4.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	4.44	6.06	3.57	1.61	13.04	2.60	2.52	2.04	0.00	1.35	9.52	4.08	8.00	4.08	2.13	4.58	0.00	2.88	2.88	0.770667	1.000000
K	alternative_acceptor	ACTG1	chr17	-	chr17:79479142-79479257	chr17:79479169-79479257		chr17:79479142-79479168	chr17:79479141-79479142		93.31	94.56	100.00	100.00	93.74	100.00	92.98	93.44	92.88	94.67	94.74	100.00	92.81	93.58	100.00	93.20	94.88	94.89	100.00	93.34	96.17	94.56	94.36	94.47	100.00	92.32	100.00	100.00	94.19	92.76	100.00	93.22	100.00	94.87	93.74	94.11	97.28	93.39	-3.89	0.233059	0.685872
K	cassette	NSFL1C	chr20	-	chr20:1435778-1438844	chr20:1435778-1436358;chr20:1436365-1438844		chr20:1436359-1436364			2.22	0.00	0.00	0.00	2.94	NA	3.77	0.00	0.00	2.17	0.00	4.76	0.00	1.82	0.00	4.82	5.08	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	1.56	0.00	0.00	1.64	1.64	0.404505	0.720108
N	jcn_only_AA	KIAA0196	chr8	-	chr8:126044637-126049478;chr8:126048463-126049478	chr8:126044824-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		5.71	0.00	0.00	NA	0.00	NA	0.00	0.00	4.55	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_acceptor	SNRNP35	chr12	+	chr12:123942764-123955638;chr12:123942764-123943510	chr12:123942764-123950084		chr12:123943511-123950084;chr12:123950085-123955638	chr12:123950084-123950085;chr12:123955638-123955639		100.00	100.00	90.91	NA	100.00	93.33	NA	91.67	NA	NA	100.00	NA	80.00	100.00	90.00	NA	90.91	NA	91.67	NA	100.00	NA	NA	NA	92.31	100.00	80.00	NA	100.00	100.00	NA	100.00	90.91	NA	NA	NA	91.67	100.00	8.33	0.114585	0.605363
N	cassette	GMFG	chr19	-	chr19:39819714-39823716;chr19:39819714-39825900	chr19:39819714-39820187;chr19:39820267-39825900,chr19:39820267-39823716		chr19:39820188-39820266			89.53	76.90	88.12	78.44	81.56	72.55	94.54	95.61	95.83	94.70	94.89	94.00	94.41	97.78	94.59	95.21	94.16	92.05	84.10	89.69	89.25	84.00	87.04	86.73	72.68	93.42	83.12	90.91	90.91	87.43	86.15	87.34	79.69	82.47	86.00	87.59	81.89	91.56	9.66	0.082884	0.641134
K	jcn_only_AD	SCPEP1	chr17	+	chr17:55062789-55068459	chr17:55065652-55068459					96.75	96.40	97.30	95.83	98.65	NA	95.71	95.51	95.68	94.57	94.78	94.31	96.14	95.57	96.24	95.67	95.71	95.19	96.00	94.02	96.00	93.84	95.98	95.71	NA	98.34	96.00	96.30	94.96	96.32	92.40	92.11	96.00	97.73	97.41	95.84	96.00	95.54	-0.46	0.499525	0.739810
N	alternative_acceptor	POLK	chr5	+	chr5:169507288-169508932	chr5:169507288-169508845		chr5:169508846-169508932	chr5:169508932-169508933		100.00	100.00	100.00	100.00	100.00	100.00	98.75	100.00	100.00	97.50	94.38	100.00	98.92	100.00	100.00	95.00	94.17	90.91	98.41	100.00	100.00	100.00	97.96	100.00	100.00	100.00	96.43	100.00	97.37	100.00	100.00	100.00	100.00	98.41	97.75	97.80	99.46	100.00	0.54	0.081172	0.585944
N	alternative_acceptor	MAN1B1	chr9	+	chr9:140002115-140002982;chr9:140002115-140002461;chr9:140002115-140002839	chr9:140002115-140002878		chr9:140002462-140002839;chr9:140002840-140002878;chr9:140002879-140002982	chr9:140002839-140002840;chr9:140002878-140002879;chr9:140002982-140002983		7.84	0.00	0.00	9.52	2.30	2.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.76	0.00	7.89	0.00	3.57	0.00	0.99	0.00	0.00	0.00	0.00	0.00	9.09	0.00	8.57	0.00	2.17	4.55	0.49	0.00	-0.49	0.881581	0.960122
K	intron_retention	MVD	chr16	-	chr16:88719817-88721099				chr16:88719816-88719817;chr16:88721099-88721100		9.09	3.26	2.04	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.70	0.00	1.35	0.00	2.22	0.00	2.53	0.00	2.70	0.00	0.00	0.00	0.00	1.85	3.51	0.00	2.86	0.00	2.62	0.00	-2.62	0.865805	1.000000
N	cassette	SAT2	chr17	-	chr17:7529933-7530874;chr17:7529933-7530460	chr17:7529933-7530070;chr17:7530112-7530460,chr17:7530112-7530874		chr17:7530071-7530111			94.12	92.91	100.00	90.32	95.19	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.27	91.25	94.05	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	86.25	93.15	89.81	92.45	93.10	100.00	96.45	97.06	0.61	0.900383	0.969496
K	intron_retention	HDAC5	chr17	-	chr17:42155784-42155867				chr17:42155783-42155784;chr17:42155867-42155868		1.54	5.68	2.22	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	NA	NA	NA	0.00	NA	2.72	8.57	3.96	NA	0.00	NA	2.04	0.00	0.00	NA	0.00	NA	25.49	12.50	7.00	0.00	0.00	NA	2.38	1.54	-0.84	0.721491	1.000000
N	cassette	PARVG	chr22	+	chr22:44569072-44581687;chr22:44577798-44581687	chr22:44569072-44579197,chr22:44577798-44579197;chr22:44579289-44581687		chr22:44579198-44579288			100.00	90.82	100.00	NA	92.00	NA	97.50	100.00	100.00	100.00	98.47	100.00	99.26	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.83	100.00	100.00	100.00	100.00	100.00	92.65	100.00	100.00	100.00	94.29	100.00	95.00	96.61	98.38	100.00	1.62	0.102724	0.683336
N	alternative_donor	CLMN	chr14	-	chr14:95660257-95660872;chr14:95660257-95660868;chr14:95660257-95660551	chr14:95660257-95660568		chr14:95660552-95660568;chr14:95660569-95660868;chr14:95660869-95660872	chr14:95660568-95660569;chr14:95660868-95660869;chr14:95660872-95660873		6.06	10.00	4.08	0.00	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	NA	NA	0.00	0.00	1.64	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	2.04	0.00	7.14	6.25	11.76	0.00	0.00	0.00	0.609991	0.816192
K	intron_retention		chr3	-	chr3:9799306-9799412				chr3:9799305-9799306;chr3:9799412-9799413		10.00	16.58	21.43	8.57	18.91	5.88	2.63	0.00	10.00	2.56	4.40	2.44	5.10	NA	NA	4.08	4.95	3.70	13.37	22.22	10.00	6.25	19.90	6.25	11.15	9.09	20.00	8.70	11.92	8.00	7.14	13.64	12.90	8.57	19.40	2.86	12.03	9.09	-2.94	0.764801	1.000000
N	alternative_acceptor	EML3	chr11	-	chr11:62371462-62371584	chr11:62371514-62371584		chr11:62371462-62371513	chr11:62371461-62371462		100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	90.91	90.48	90.91	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	92.31	100.00	100.00	100.00	100.00	100.00	100.00	96.16	-3.84	0.183898	0.660713
K	intron_retention	RP11-316M1.12	chr1	+	chr1:150938220-150938307				chr1:150938219-150938220;chr1:150938307-150938308		93.17	86.12	95.93	100.00	94.22	100.00	96.26	95.58	95.91	90.80	85.02	88.89	93.33	94.48	93.57	95.93	91.07	88.89	94.38	95.93	96.18	95.50	96.00	100.00	100.00	95.65	100.00	94.95	94.09	94.85	95.19	93.97	100.00	92.90	97.50	100.00	95.32	95.38	0.06	0.975233	1.000000
N	alternative_donor	FCGR2A	chr1	+	chr1:161479530-161479609;chr1:161476451-161479609;chr1:161476382-161479609	chr1:161476498-161479609		chr1:161476382-161476450;chr1:161476451-161476497;chr1:161476498-161479529	chr1:161476381-161476382;chr1:161476450-161476451;chr1:161476497-161476498		0.38	0.00	0.24	5.56	0.00	4.55	0.00	0.11	0.84	2.28	0.00	3.62	0.38	0.44	0.00	0.72	0.00	3.41	0.00	0.29	0.00	0.99	0.00	2.22	0.00	0.27	0.16	0.66	0.00	1.27	0.00	0.46	0.00	0.00	0.00	1.66	0.00	0.28	0.28	0.073856	0.460677
K	alternative_donor	MRPL21	chr11	-	chr11:68665481-68668015	chr11:68665481-68668002		chr11:68668003-68668015	chr11:68668015-68668016		5.88	4.76	4.76	6.82	3.66	2.33	2.22	NA	0.00	0.00	0.00	0.00	3.70	0.00	3.33	1.79	1.82	3.70	1.64	0.00	1.82	0.00	3.45	3.12	0.00	0.00	3.45	0.00	3.28	0.00	0.00	5.88	3.12	2.44	3.57	2.08	2.67	0.00	-2.67	0.340508	0.650093
N	jcn_only_AA	CD37,SNRPA	chr19	+	chr19:49842671-49843672;chr19:49842671-49843507	chr19:49842671-49842914		chr19:49842915-49843507;chr19:49843508-49843672	chr19:49843507-49843508;chr19:49843672-49843673		11.25	4.50	4.44	3.17	3.57	5.38	4.96	6.19	2.56	6.56	2.13	1.54	1.83	0.00	0.00	3.92	2.70	2.56	5.60	4.08	5.36	5.26	3.60	2.56	3.59	5.77	4.88	5.08	3.53	3.64	8.89	8.11	3.65	4.84	6.15	2.97	4.08	5.98	1.91	0.275385	0.663989
K	cassette	MTURN	chr7	+	chr7:30174915-30197053	chr7:30174915-30185792;chr7:30185916-30197053		chr7:30185793-30185915			NA	63.16	NA	71.43	62.50	68.52	60.87	71.88	53.85	57.14	44.44	65.22	70.00	69.70	62.50	68.42	62.50	51.61	80.00	NA	63.64	80.00	66.67	77.78	76.92	78.26	NA	72.22	75.00	73.08	60.00	57.14	90.91	NA	NA	80.65	73.46	70.79	-2.67	0.553732	0.820764
K	intron_retention	PNPLA6	chr19	+	chr19:7622171-7623735				chr19:7622170-7622171;chr19:7623735-7623736		12.77	11.11	16.79	10.53	10.53	13.33	0.00	0.00	0.00	0.00	2.99	0.00	2.06	1.72	0.00	6.45	1.67	0.00	11.24	12.60	12.40	4.17	13.04	0.00	7.92	9.62	8.96	6.25	8.75	0.00	13.16	14.16	14.29	10.00	10.53	8.57	9.52	11.11	1.59	0.982554	1.000000
K	intron_retention		chr1	+	chr1:2323398-2327222				chr1:2323397-2323398;chr1:2327222-2327223		5.71	12.50	8.09	3.23	6.56	4.55	0.79	1.64	2.15	2.44	2.06	0.00	2.74	0.94	2.41	0.00	4.00	2.13	4.55	4.04	3.49	7.32	6.67	10.26	15.79	5.56	5.88	7.89	8.93	10.71	3.96	3.65	3.17	6.35	6.52	4.76	3.86	4.00	0.14	0.479118	1.000000
K	intron_retention	ATP6V0B	chr1	+	chr1:44442889-44443652				chr1:44442888-44442889;chr1:44443652-44443653		6.40	3.39	6.90	2.28	2.93	1.96	0.00	0.57	0.00	0.43	0.55	0.00	0.94	0.00	1.60	0.57	1.02	0.38	3.57	5.21	2.55	3.47	4.47	5.24	3.31	4.88	5.81	1.91	2.78	2.01	7.63	8.49	5.34	3.38	3.87	3.73	3.35	5.04	1.69	0.727117	1.000000
N	alternative_donor	ATG16L2	chr11	+	chr11:72539554-72539773	chr11:72539674-72539773		chr11:72539554-72539673	chr11:72539553-72539554		10.64	11.73	14.49	14.29	5.62	3.45	0.00	NA	NA	NA	NA	NA	0.00	NA	9.09	NA	NA	NA	5.04	12.00	7.04	7.69	2.22	0.00	4.19	13.64	15.09	10.00	4.17	NA	22.22	16.05	12.60	10.53	8.33	10.00	4.62	12.82	8.21	0.034823	0.349791
K	intron_retention	PNP	chr14	+	chr14:20943108-20943220				chr14:20943107-20943108;chr14:20943220-20943221		5.08	3.45	5.05	6.08	3.35	5.62	0.00	0.00	0.00	0.86	0.87	0.22	0.00	0.00	0.00	0.60	1.92	0.95	0.00	3.90	3.45	4.30	4.29	6.55	NA	2.24	4.31	2.21	3.10	3.40	3.85	4.76	4.00	2.51	3.14	5.60	0.00	3.04	3.04	0.959047	1.000000
K	cassette	MRPS18A	chr6	-	chr6:43639644-43643230	chr6:43639644-43642938;chr6:43643009-43643230		chr6:43642939-43643008			100.00	84.38	83.33	93.33	85.19	100.00	96.00	93.10	93.75	96.43	100.00	100.00	100.00	96.30	94.87	100.00	100.00	100.00	84.62	88.00	87.50	90.91	83.33	92.31	71.43	87.50	93.33	90.00	100.00	100.00	67.65	69.70	78.26	100.00	96.00	96.77	84.50	90.55	6.05	0.650999	0.871482
K	intron_retention	PSAP	chr10	-	chr10:73579541-73590987				chr10:73579540-73579541;chr10:73590987-73590988		90.58	92.91	87.95	93.61	91.23	92.61	90.16	89.78	89.99	90.34	89.93	90.69	90.07	91.63	89.48	87.92	91.32	90.35	93.04	88.61	93.03	89.69	89.74	87.50	90.06	90.67	90.17	90.93	90.50	91.63	91.86	89.39	94.62	87.87	88.08	88.62	91.53	90.62	-0.91	0.352756	1.000000
K	intron_retention		chr5	+	chr5:132202728-132203179				chr5:132202727-132202728;chr5:132203179-132203180		4.96	3.05	6.35	1.79	2.25	0.70	1.28	3.23	3.96	0.95	2.19	0.00	2.40	1.92	5.41	1.53	2.65	1.01	2.29	6.85	2.30	3.17	2.73	0.80	1.53	6.25	5.56	1.47	1.54	0.00	7.61	7.26	2.06	1.66	2.87	1.12	2.17	5.61	3.43	0.512639	1.000000
K	cassette	STARD3	chr17	+	chr17:37814776-37815303	chr17:37814776-37814961;chr17:37815074-37815303		chr17:37814962-37815073			81.48	87.10	86.36	NA	84.62	NA	78.57	92.00	82.61	100.00	90.00	80.00	89.74	86.96	64.29	77.78	87.50	NA	77.78	82.14	71.43	100.00	81.58	87.50	63.16	74.29	85.00	90.00	81.25	NA	76.92	80.43	77.78	70.97	72.97	66.67	78.17	81.81	3.64	0.497717	0.781431
K	intron_retention	GDI1	chrX	+	chrX:153668487-153668721				chrX:153668486-153668487;chrX:153668721-153668722		12.00	24.14	18.49	9.52	12.50	NA	1.23	1.71	0.00	1.32	1.59	0.90	2.41	2.24	1.52	2.80	2.26	0.99	NA	12.22	21.21	22.81	21.74	13.10	30.00	7.81	10.37	15.28	13.25	8.70	16.36	16.48	45.45	15.04	17.27	14.39	24.14	9.90	-14.24	0.658212	1.000000
K	cassette		chr15	.	chr15:74912567-74914834	chr15:74912567-74914460;chr15:74914558-74914834		chr15:74914461-74914557			96.23	100.00	83.87	100.00	96.00	NA	90.91	100.00	100.00	96.55	100.00	100.00	91.30	92.68	96.77	100.00	100.00	100.00	100.00	88.10	100.00	85.71	93.48	100.00	100.00	90.00	92.86	91.30	88.89	90.32	91.30	91.07	90.00	89.19	91.67	93.55	95.65	91.99	-3.66	0.417844	0.728056
K	jcn_only_AD	YIF1B	chr19	-	chr19:38796148-38798067	chr19:38796148-38797553					11.76	13.13	7.69	9.62	10.66	11.54	15.15	3.70	9.38	15.91	15.52	13.95	5.95	0.00	4.55	5.88	13.04	16.22	9.41	7.14	8.70	9.38	7.23	9.68	10.75	0.00	7.69	6.25	7.22	8.11	3.03	15.91	12.64	15.00	11.67	6.58	11.70	3.37	-8.33	0.014041	0.285457
N	alternative_donor	ARRDC2	chr19	+	chr19:18119928-18120400	chr19:18119950-18120400		chr19:18119928-18119949	chr19:18119927-18119928		0.00	1.59	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	3.57	NA	7.14	3.23	0.00	0.00	2.50	NA	0.00	0.00	0.00	NA	0.00	NA	5.00	2.04	0.00	0.00	2.70	0.00	0.00	1.61	1.61	0.733641	0.890213
N	jcn_only_AA	MICAL1	chr6	-	chr6:109767066-109767338;chr6:109767156-109767338;chr6:109767079-109767338	chr6:109767105-109767338		chr6:109767066-109767078;chr6:109767079-109767104;chr6:109767105-109767155	chr6:109767065-109767066;chr6:109767078-109767079;chr6:109767104-109767105		0.00	0.00	0.00	0.00	6.00	7.14	8.16	4.65	0.00	0.00	8.57	0.00	4.88	0.00	0.00	13.64	0.00	NA	3.70	5.13	6.45	8.33	6.90	0.00	4.67	0.00	2.78	17.39	0.00	0.00	2.04	0.00	5.77	0.00	0.00	10.00	4.78	1.02	-3.76	0.112726	0.663989
K	intron_retention	EEF1D	chr8	-	chr8:144663499-144668898				chr8:144663498-144663499;chr8:144668898-144668899		9.38	13.16	12.50	6.98	3.28	8.77	0.00	NA	5.00	0.00	0.00	NA	3.03	0.00	4.76	3.57	0.00	0.00	11.36	14.29	7.14	0.00	6.38	8.70	13.64	8.33	8.11	6.90	4.44	6.25	25.00	18.18	5.48	9.09	4.35	13.89	8.42	9.38	0.96	0.493968	1.000000
N	jcn_only_AD	TRABD	chr22	+	chr22:50633466-50635669	chr22:50633470-50635669		chr22:50633466-50633469	chr22:50633465-50633466		93.33	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	94.44	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	cassette	ARMCX6	chrX	-	chrX:100871757-100872492	chrX:100871757-100872272;chrX:100872361-100872492		chrX:100872273-100872360			0.00	0.00	4.55	NA	0.00	NA	0.00	2.27	0.00	6.06	1.47	6.45	4.44	2.78	0.00	8.89	4.84	12.50	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	4.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	1.14	0.422669	0.730716
K	intron_retention	FAM160B2	chr8	+	chr8:21959827-21960038				chr8:21959826-21959827;chr8:21960038-21960039		10.00	0.00	11.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	0.00	6.25	0.00	4.76	NA	NA	11.11	2.63	0.00	4.55	0.00	0.00	10.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.876888	1.000000
N	coord_cassette	RP11-264B17.3,SPNS1	chr16	+	chr16:28992937-28994177	chr16:28992937-28993221;chr16:28993378-28993676;chr16:28993867-28994177		chr16:28993222-28993377;chr16:28993677-28993866		chr16:28992791-28992936;chr16:28994178-28994243	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	98.29	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.83	100.00	98.77	100.00	100.00	100.00	0.00	0.616755	0.788076
N	jcn_only_AA	PRRC2A	chr6	+	chr6:31602335-31602529;chr6:31602335-31602691;chr6:31602335-31602574	chr6:31602335-31602717		chr6:31602530-31602574;chr6:31602575-31602691;chr6:31602692-31602717	chr6:31602574-31602575;chr6:31602691-31602692;chr6:31602717-31602718		0.00	0.00	2.41	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	12.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.244734	0.663989
K	intron_retention	REEP4	chr8	-	chr8:21996575-21996928				chr8:21996574-21996575;chr8:21996928-21996929		14.29	21.33	6.25	NA	15.56	NA	4.44	0.00	0.00	7.69	0.00	0.00	3.70	0.00	6.67	0.00	3.28	NA	17.78	10.00	7.14	NA	20.00	NA	31.43	NA	23.53	NA	17.65	NA	0.00	6.67	10.42	NA	12.00	NA	14.10	0.00	-14.10	0.191787	1.000000
K	alternative_first_exon	PKN1	chr19	+	chr19:14544355-14551954	chr19:14551142-14551954	chr19:14544169-14544354	chr19:14551072-14551141			72.00	54.55	68.57	NA	NA	NA	50.00	70.00	64.29	40.00	54.55	NA	47.22	72.73	64.00	45.45	44.44	NA	NA	80.00	80.00	NA	53.85	NA	30.00	72.73	66.67	NA	NA	NA	83.33	81.48	NA	NA	NA	NA	48.61	72.73	24.12	0.006902	0.040950
K	cassette	CIRBP	chr19	+	chr19:1272051-1274305	chr19:1272051-1273492;chr19:1273715-1274305		chr19:1273493-1273714			37.74	22.16	51.35	47.37	26.36	37.04	60.00	50.00	34.62	NA	58.33	NA	45.00	NA	54.84	29.41	46.67	NA	15.08	47.62	24.78	52.94	34.62	75.86	10.55	54.90	54.43	53.12	41.18	52.50	20.75	35.83	11.85	62.86	61.90	68.97	18.62	47.62	29.00	0.186409	0.709176
K	alternative_acceptor	FOLR2,TKFC	chr11	+	chr11:71932356-71932576	chr11:71932356-71932513		chr11:71932514-71932576	chr11:71932576-71932577		92.34	93.00	94.34	93.37	93.32	93.03	92.16	88.89	89.91	88.16	86.90	82.44	93.24	94.50	91.94	92.92	86.89	86.68	87.83	90.57	86.57	90.13	91.08	89.49	90.66	92.96	90.97	90.30	90.65	91.43	85.65	90.91	86.02	93.02	91.59	93.20	91.41	91.45	0.05	0.854942	0.947480
K	jcn_only_AD	PI4KAP2	chr22	-	chr22:21830450-21832078	chr22:21830450-21830932					68.42	71.43	53.85	NA	73.08	NA	91.67	NA	91.67	100.00	100.00	100.00	94.59	NA	88.24	78.57	95.24	100.00	41.67	40.00	66.67	NA	28.57	NA	100.00	86.96	82.35	100.00	92.86	100.00	50.00	54.84	50.00	65.38	75.68	70.97	81.55	59.21	-22.34	0.378017	0.657607
K	jcn_only_AD	FIBP	chr11	-	chr11:65652658-65653000	chr11:65652658-65652979		chr11:65652980-65653000	chr11:65653000-65653001		14.93	6.90	8.00	20.83	9.46	16.67	12.50	20.00	18.97	6.00	10.39	13.33	16.28	14.81	12.00	22.45	11.63	12.00	11.97	11.59	14.94	9.09	12.66	4.35	16.25	13.56	14.93	22.73	12.86	9.09	10.53	11.84	14.38	15.62	8.62	16.33	13.44	14.19	0.74	0.560180	0.778873
N	alternative_acceptor	RIN1	chr11	-	chr11:66100224-66100728	chr11:66100440-66100728		chr11:66100224-66100439	chr11:66100223-66100224		14.29	17.86	NA	NA	12.90	NA	NA	10.00	NA	NA	0.00	NA	NA	NA	NA	NA	7.69	NA	14.29	9.52	14.29	NA	6.25	NA	5.88	9.09	NA	NA	15.38	NA	7.14	NA	9.52	NA	NA	NA	11.90	9.52	-2.38	0.548446	0.824249
K	alternative_acceptor	GLRX	chr5	-	chr5:95150512-95152210;chr5:95150094-95152210	chr5:95150662-95152210		chr5:95150094-95150511;chr5:95150512-95150661	chr5:95150093-95150094;chr5:95150511-95150512		4.40	2.00	5.41	1.72	2.10	0.00	1.37	3.12	1.75	3.85	1.09	4.56	1.26	2.87	3.31	1.88	0.91	3.45	0.70	3.21	0.86	4.76	1.96	3.55	2.38	5.14	4.45	1.41	0.80	1.43	5.96	4.00	0.68	3.00	3.31	3.72	1.31	3.81	2.49	0.001795	0.302671
K	jcn_only_AD	SSBP1	chr7	+	chr7:141438304-141438923;chr7:141438211-141438923	chr7:141438394-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		3.45	0.00	13.16	4.76	3.23	0.00	3.77	0.00	11.63	4.26	3.23	0.00	3.23	13.04	8.89	5.36	3.23	0.00	0.00	11.11	4.76	5.41	2.67	3.45	NA	15.38	6.25	0.00	4.49	4.05	0.00	3.33	3.45	6.52	5.77	3.17	3.23	7.28	4.05	0.133831	0.657607
K	cassette	SLC39A13	chr11	+	chr11:47434019-47435147	chr11:47434019-47434950;chr11:47435059-47435147		chr11:47434951-47435058			97.87	87.50	100.00	100.00	95.45	NA	100.00	100.00	100.00	100.00	100.00	100.00	93.02	96.15	100.00	92.31	96.30	100.00	100.00	97.62	90.32	87.50	90.57	100.00	100.00	93.75	88.89	86.21	84.62	100.00	100.00	91.67	81.25	92.31	91.80	93.88	96.51	97.75	1.24	0.288225	0.709176
K	intron_retention	HSPA8	chr11	-	chr11:122929812-122931412				chr11:122929811-122929812;chr11:122931412-122931413		87.32	76.60	89.49	82.67	81.96	76.19	93.34	90.98	93.66	92.65	93.16	92.51	92.72	92.26	92.05	93.58	92.47	91.54	84.21	93.01	87.26	90.02	91.24	90.70	73.33	89.76	88.83	89.66	90.52	88.51	91.98	94.03	79.80	89.83	90.39	91.47	82.00	91.48	9.48	0.371382	1.000000
N	jcn_only_AD	LRRC25	chr19	-	chr19:18502936-18506994;chr19:18502936-18506885	chr19:18502936-18508262		chr19:18506886-18506994;chr19:18506995-18508262	chr19:18506994-18506995;chr19:18508262-18508263		1.20	2.83	0.71	0.00	2.63	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	NA	5.80	2.67	0.00	0.00	2.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	3.42	0.00	0.00	0.00	0.00	0.00	0.60	0.60	0.988657	0.994768
K	intron_retention		chr22	+	chr22:37707106-37707496				chr22:37707105-37707106;chr22:37707496-37707497		1.85	7.69	2.41	NA	0.00	NA	0.47	0.18	0.00	0.82	0.57	0.00	0.43	0.31	0.42	1.05	0.56	0.00	0.00	1.24	1.20	0.00	1.09	0.76	0.00	0.56	1.82	1.22	1.29	0.56	1.83	2.34	0.00	0.00	1.75	1.77	0.21	0.90	0.69	0.993193	1.000000
K	alternative_acceptor	EEF1B2	chr2	+	chr2:207024409-207024682	chr2:207024409-207024636		chr2:207024637-207024682	chr2:207024682-207024683		50.00	58.06	51.22	70.27	83.05	83.33	59.12	40.00	47.22	60.29	54.09	56.13	53.96	35.71	50.00	68.34	62.20	62.00	71.88	30.77	68.97	80.77	82.35	85.11	46.67	16.67	59.38	76.60	81.36	78.05	50.00	40.74	54.76	75.86	77.19	79.41	56.41	37.86	-18.55	0.010233	0.471722
N	intron_retention		chr17	+	chr17:29286023-29311634				chr17:29286022-29286023;chr17:29311634-29311635		76.74	92.55	80.65	100.00	92.25	100.00	76.60	85.85	89.66	66.67	83.64	NA	73.64	84.13	86.84	100.00	63.91	NA	100.00	75.00	100.00	78.57	79.44	NA	100.00	65.89	75.61	80.00	86.86	100.00	75.00	81.48	95.42	81.08	66.98	81.82	93.98	75.87	-18.11	0.537571	1.000000
N	alternative_donor	ATXN2L	chr16	+	chr16:28847444-28847646	chr16:28847498-28847646		chr16:28847444-28847497	chr16:28847443-28847444		100.00	100.00	100.00	NA	100.00	NA	84.62	72.22	76.47	61.54	69.23	NA	100.00	75.00	65.38	58.82	50.00	NA	NA	100.00	84.62	80.00	100.00	80.00	NA	100.00	100.00	NA	70.59	63.64	100.00	100.00	100.00	92.31	100.00	87.50	100.00	100.00	0.00	0.485786	0.744342
N	jcn_only_AA	CORO7,CORO7-PAM16	chr16	-	chr16:4440448-4445289;chr16:4438633-4445289;chr16:4412133-4445289	chr16:4439278-4445289					0.00	0.00	0.00	NA	0.00	NA	0.00	2.20	5.26	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	NA	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.57	0.117037	0.663989
K	intron_retention	WDR6	chr3	+	chr3:49051550-49051642				chr3:49051549-49051550;chr3:49051642-49051643		57.89	44.83	42.86	NA	37.50	NA	17.39	0.00	12.50	NA	0.00	NA	11.43	5.88	24.00	8.33	4.55	NA	NA	50.00	25.00	38.89	43.24	50.00	18.18	35.71	34.78	19.05	27.03	NA	50.00	45.00	36.36	38.46	32.14	55.00	18.18	42.86	24.68	0.987651	1.000000
N	alternative_donor	METRNL	chr17	+	chr17:81042593-81042813;chr17:81041067-81042813;chr17:81039948-81042813;chr17:81042033-81042813;chr17:81039315-81042813	chr17:81037862-81042813		chr17:81037862-81039314;chr17:81039315-81039947;chr17:81039948-81041066;chr17:81041067-81042032;chr17:81042033-81042592	chr17:81037861-81037862;chr17:81039314-81039315;chr17:81039947-81039948;chr17:81041066-81041067;chr17:81042032-81042033		96.59	100.00	96.05	100.00	100.00	100.00	100.00	100.00	100.00	98.01	98.88	97.74	100.00	100.00	100.00	97.32	99.18	95.89	100.00	96.36	100.00	96.55	98.33	94.25	100.00	95.77	98.86	97.01	98.73	97.18	98.39	98.36	100.00	90.77	94.44	90.98	100.00	97.49	-2.51	0.038029	0.357790
K	cassette	COMMD9	chr11	-	chr11:36297791-36300026	chr11:36297791-36298638;chr11:36298674-36300026		chr11:36298639-36298673			92.86	100.00	90.74	90.00	92.11	NA	100.00	100.00	98.25	98.46	98.43	100.00	100.00	100.00	100.00	100.00	97.54	100.00	85.00	87.50	94.59	100.00	92.59	100.00	100.00	NA	92.86	100.00	95.45	100.00	NA	83.33	86.21	94.29	94.83	96.88	100.00	96.43	-3.57	0.979947	0.995133
N	jcn_only_AD	CNOT10	chr3	+	chr3:32809639-32811378;chr3:32810967-32811378	chr3:32806302-32811378		chr3:32806302-32809638;chr3:32809639-32810966	chr3:32806301-32806302;chr3:32809638-32809639		100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	91.67	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.77	NA	100.00	100.00	100.00	100.00	0.00	0.548815	0.768655
N	jcn_only_AA	NEMF	chr14	-	chr14:50251425-50251642	chr14:50251432-50251642		chr14:50251425-50251431	chr14:50251424-50251425		96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	96.72	100.00	98.48	100.00	100.00	100.00	100.00	0.00	0.202998	0.663989
N	alternative_donor	CDK5RAP3	chr17	+	chr17:46053009-46053234;chr17:46053020-46053234	chr17:46053005-46053234		chr17:46053005-46053008;chr17:46053009-46053019	chr17:46053004-46053005;chr17:46053008-46053009		0.00	0.00	0.00	7.69	5.00	16.67	0.00	NA	NA	0.00	0.00	11.76	0.00	0.00	9.09	0.00	0.00	0.00	8.00	0.00	0.00	0.00	4.65	10.00	0.00	0.00	6.25	5.00	2.33	7.41	4.35	0.00	4.00	4.55	0.00	2.63	0.00	0.00	0.00	0.504715	0.758592
K	intron_retention		chr15	+	chr15:23000244-23002875				chr15:23000243-23000244;chr15:23002875-23002876		0.00	0.00	0.81	0.00	1.23	3.45	1.25	0.00	0.00	0.70	0.69	0.90	1.03	2.00	1.85	0.56	0.40	1.12	4.21	0.00	1.52	1.85	1.65	0.83	6.45	1.61	0.00	0.00	1.20	2.74	0.00	1.54	3.26	1.09	0.93	1.32	2.25	0.00	-2.25	0.891815	1.000000
K	jcn_only_AD	MKRN1	chr7	-	chr7:140155034-140155656	chr7:140155034-140155589		chr7:140155590-140155656	chr7:140155656-140155657		87.72	80.00	86.96	100.00	100.00	100.00	100.00	97.85	98.17	100.00	97.75	100.00	95.59	100.00	97.78	100.00	100.00	100.00	76.92	82.46	88.00	94.12	95.56	100.00	64.71	97.50	95.12	100.00	100.00	100.00	77.78	78.82	84.21	92.11	92.86	87.10	82.10	92.61	10.51	0.308333	0.657607
K	intron_retention	LINC01578	chr15	+	chr15:93426417-93428744				chr15:93426416-93426417;chr15:93428744-93428745		3.03	0.00	2.67	0.00	8.70	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	5.56	5.13	0.00	0.00	16.67	0.00	5.56	1.64	4.55	0.00	0.00	10.71	5.97	3.57	9.09	9.68	9.09	0.00	4.29	4.29	0.434543	1.000000
N	jcn_only_AD	CAST	chr5	+	chr5:96093000-96093147;chr5:96090446-96093147	chr5:96093041-96093147		chr5:96090446-96092999;chr5:96093000-96093040	chr5:96090445-96090446;chr5:96092999-96093000		3.90	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.00	0.00	7.46	9.43	0.00	1.94	0.00	1.89	0.00	0.52	0.52	0.157491	0.657607
K	intron_retention	HLA-DMA	chr6	-	chr6:32917667-32918295				chr6:32917666-32917667;chr6:32918295-32918296		5.26	5.79	18.06	0.71	2.66	0.00	0.93	1.56	6.38	0.41	0.99	0.00	3.03	0.00	0.00	0.00	2.65	0.00	5.99	10.53	4.23	1.06	3.41	0.51	6.67	4.85	8.43	1.79	3.31	0.21	3.41	9.84	3.86	1.05	4.41	0.52	4.83	4.13	-0.70	0.899113	1.000000
K	intron_retention	GUK1	chr1	+	chr1:228335401-228336365				chr1:228335400-228335401;chr1:228336365-228336366		2.63	4.90	5.00	5.38	1.97	4.94	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	10.00	0.00	0.00	NA	1.25	5.88	6.58	2.04	2.68	3.12	3.95	9.09	1.85	3.12	4.76	12.90	8.20	9.52	3.83	3.12	3.03	5.56	2.54	4.25	1.71	0.687773	1.000000
K	intron_retention		chr1	+	chr1:182794956-182798737				chr1:182794955-182794956;chr1:182798737-182798738		68.00	86.29	81.60	78.57	77.91	60.00	90.74	88.89	86.36	86.24	84.50	89.81	92.17	84.62	100.00	82.22	90.40	94.67	77.42	69.51	74.29	73.24	82.29	79.63	93.18	77.42	84.16	87.50	87.58	75.93	58.82	69.91	74.03	72.18	78.36	73.74	88.52	73.47	-15.05	0.989793	1.000000
K	intron_retention	CD276	chr15	+	chr15:74005405-74005630				chr15:74005404-74005405;chr15:74005630-74005631		97.67	100.00	100.00	100.00	100.00	100.00	97.42	100.00	100.00	97.88	97.93	100.00	97.26	100.00	95.24	100.00	100.00	98.54	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.66	95.83	100.00	100.00	98.70	94.64	100.00	100.00	97.32	98.39	98.23	100.00	98.84	-1.16	0.947482	1.000000
K	intron_retention		chr1	+	chr1:76255042-76255636				chr1:76255041-76255042;chr1:76255636-76255637		0.00	0.00	7.50	0.00	4.76	NA	0.00	0.00	0.00	2.44	0.00	0.00	4.65	0.00	7.69	0.00	0.00	0.00	NA	4.76	5.26	10.53	3.12	12.50	NA	7.69	3.12	5.00	0.00	5.56	4.17	6.90	0.00	7.84	11.63	10.87	0.00	2.08	2.08	0.951049	1.000000
K	alternative_donor	RP11-438J1.1,TATDN2	chr3	+	chr3:10320719-10320904	chr3:10320748-10320904		chr3:10320719-10320747	chr3:10320718-10320719		15.62	4.88	19.23	15.38	19.44	11.11	17.65	19.23	33.33	19.05	17.07	NA	12.82	7.41	27.27	20.00	17.39	NA	16.67	22.22	33.33	7.14	17.24	25.00	14.29	14.81	22.73	NA	17.86	NA	9.09	10.00	21.43	20.83	14.71	16.67	15.48	15.21	-0.27	0.974609	0.994374
N	cassette	LRCH4,RP11-44M6.7	chr7	-	chr7:100174629-100175119;chr7:100174629-100174895	chr7:100174629-100174708;chr7:100174778-100174895,chr7:100174778-100175119		chr7:100174709-100174777			92.31	88.24	96.55	NA	92.59	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.35	97.96	97.67	100.00	85.00	88.24	90.74	96.83	98.00	91.67	96.88	93.33	84.62	96.23	86.36	100.00	94.74	93.33	93.04	97.39	4.35	0.602599	0.851055
K	intron_retention	FANCA	chr16	-	chr16:89805117-89805289				chr16:89805116-89805117;chr16:89805289-89805290		22.86	12.50	61.11	NA	54.55	NA	NA	10.00	NA	NA	NA	NA	40.00	9.09	NA	NA	NA	NA	7.14	22.22	33.33	NA	78.57	NA	0.00	15.38	34.62	NA	NA	NA	24.00	35.48	20.00	NA	NA	70.00	12.50	18.80	6.30	0.543139	1.000000
K	intron_retention	PHKG2	chr16	+	chr16:30767594-30767687				chr16:30767593-30767594;chr16:30767687-30767688		9.52	6.82	11.63	NA	14.81	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	12.50	9.09	11.11	NA	13.04	NA	7.69	8.33	5.56	NA	15.79	NA	6.67	13.04	20.69	10.00	11.11	NA	7.26	7.50	0.24	0.949636	1.000000
K	cassette	FAM193B	chr5	-	chr5:176949073-176950957	chr5:176949073-176950159;chr5:176950267-176950957		chr5:176950160-176950266			0.00	1.69	5.71	4.17	0.00	0.00	NA	NA	NA	NA	NA	NA	NA	NA	0.00	NA	NA	NA	3.45	0.00	2.70	NA	0.00	NA	0.00	10.00	2.17	NA	0.00	0.00	0.00	2.70	2.78	0.00	0.00	5.26	2.23	0.00	-2.23	0.853043	0.950337
K	alternative_last_exon	TGFB1	chr19	-	chr19:41815731-41838032;chr19:41808626-41838032	chr19:41837116-41838032	chr19:41808529-41808625	chr19:41836228-41837115			97.44	96.97	86.49	98.41	98.41	100.00	100.00	98.46	100.00	100.00	97.83	100.00	100.00	100.00	100.00	97.92	99.01	100.00	99.46	100.00	100.00	100.00	99.12	100.00	100.00	98.46	100.00	100.00	99.00	97.62	97.96	100.00	100.00	97.83	100.00	98.04	100.00	98.46	-1.54	0.322571	0.521724
K	jcn_only_AD	RAB7A	chr3	+	chr3:128525293-128526385	chr3:128525434-128526385		chr3:128525293-128525433	chr3:128525292-128525293		96.63	90.91	96.64	97.26	97.56	100.00	96.75	97.71	96.32	97.14	97.01	97.33	96.81	96.94	97.20	96.99	97.87	97.45	100.00	98.65	100.00	99.06	99.47	99.14	100.00	97.06	97.34	99.24	99.04	99.10	98.20	98.31	97.30	98.74	98.60	98.62	97.06	97.38	0.33	0.698099	0.845069
N	alternative_acceptor		chr1	+	chr1:167745404-167756420;chr1:167745404-167755847	chr1:167745404-167757056		chr1:167755848-167756420;chr1:167756421-167757056	chr1:167756420-167756421;chr1:167757056-167757057		97.50	100.00	96.45	98.54	100.00	99.56	100.00	100.00	100.00	100.00	100.00	99.58	100.00	100.00	100.00	98.51	100.00	100.00	100.00	100.00	97.87	96.47	94.74	97.16	NA	96.97	96.77	100.00	100.00	98.25	97.86	97.88	100.00	92.50	94.74	92.66	100.00	98.93	-1.07	0.079924	0.585944
K	alternative_acceptor	YLPM1	chr14	+	chr14:75291011-75295915	chr14:75291011-75294074		chr14:75294075-75295915	chr14:75295915-75295916		7.69	3.23	6.25	NA	6.67	NA	0.00	NA	0.00	0.00	0.00	0.00	4.00	0.00	0.00	0.00	0.00	NA	7.14	10.00	5.56	8.33	3.57	NA	NA	NA	7.69	0.00	2.50	0.00	10.00	8.33	6.67	4.55	3.57	8.70	4.00	8.85	4.85	0.363299	0.709013
N	jcn_only_AA	HSF1	chr8	+	chr8:145537718-145537787;chr8:145537718-145537811;chr8:145537718-145537795	chr8:145537718-145537792		chr8:145537788-145537792;chr8:145537793-145537795;chr8:145537796-145537811	chr8:145537792-145537793;chr8:145537795-145537796;chr8:145537811-145537812		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	TACC3	chr4	+	chr4:1746560-1746674				chr4:1746559-1746560;chr4:1746674-1746675		0.00	3.38	6.67	4.00	4.55	0.00	1.82	NA	0.00	10.00	2.56	NA	0.00	NA	NA	0.00	0.00	NA	1.95	0.00	5.05	0.00	2.99	0.00	1.04	0.00	2.78	0.00	2.50	NA	5.00	0.00	2.47	0.00	3.17	0.00	1.89	0.00	-1.89	0.859716	1.000000
K	intron_retention	S100A6	chr1	-	chr1:153507852-153508424				chr1:153507851-153507852;chr1:153508424-153508425		12.00	9.84	NA	6.06	14.46	3.96	3.57	3.85	NA	3.09	3.23	2.02	4.17	4.35	6.25	3.45	4.30	1.41	10.39	20.00	13.04	15.00	20.34	14.29	6.06	29.41	NA	9.09	21.82	6.12	12.12	41.67	11.11	3.12	15.38	2.04	7.95	12.06	4.11	0.586298	1.000000
N	cassette	REEP4	chr8	-	chr8:21997762-21998963	chr8:21997762-21998137;chr8:21998211-21998963		chr8:21998138-21998210			100.00	100.00	100.00	NA	90.91	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	NA	100.00	95.24	92.31	88.00	NA	100.00	100.00	0.00	0.363217	0.709176
K	intron_retention		chr12	-	chr12:57638150-57638319				chr12:57638149-57638150;chr12:57638319-57638320		13.58	21.57	15.00	5.26	8.06	0.00	0.00	0.48	0.00	0.00	0.00	0.00	0.00	0.70	0.00	0.00	0.00	0.00	10.87	10.34	6.38	0.00	12.20	0.00	12.12	8.21	17.14	0.00	5.08	2.56	10.61	13.33	10.84	0.00	10.53	2.94	10.86	9.28	-1.58	0.941281	1.000000
K	intron_retention	GMFG	chr19	-	chr19:39819189-39819639				chr19:39819188-39819189;chr19:39819639-39819640		5.95	4.54	8.63	0.95	1.94	0.46	1.19	1.94	1.20	0.00	1.10	0.00	1.89	1.81	2.86	0.00	2.78	0.00	3.42	3.60	3.66	1.64	2.09	0.00	4.86	4.03	6.67	3.27	2.90	0.33	1.87	5.56	3.59	2.48	2.79	0.80	3.50	2.77	-0.73	0.356567	1.000000
K	intron_retention	JOSD2	chr19	-	chr19:51009530-51009634				chr19:51009529-51009530;chr19:51009634-51009635		1.28	0.00	3.28	0.00	0.00	1.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	2.08	1.61	0.00	0.00	0.00	0.44	0.00	0.00	0.00	0.00	0.00	5.08	4.26	4.67	0.00	2.56	0.00	0.22	0.64	0.42	0.925325	1.000000
K	intron_retention	BECN1	chr17	-	chr17:40962947-40963672				chr17:40962946-40962947;chr17:40963672-40963673		2.44	1.28	3.54	0.00	4.08	4.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	1.22	0.00	5.13	0.00	1.56	4.55	3.45	7.69	0.00	6.35	3.53	2.38	3.08	1.96	2.60	2.27	0.00	9.26	2.94	6.33	0.00	1.22	1.22	0.838555	1.000000
K	intron_retention	SRRT	chr7	+	chr7:100482992-100483321				chr7:100482991-100482992;chr7:100483321-100483322		4.88	3.70	4.62	0.00	3.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	2.74	0.00	0.00	0.00	1.56	0.00	2.13	0.00	4.88	4.88	0.00	4.65	6.25	1.96	0.00	1.06	1.06	0.574852	1.000000
K	intron_retention	CCHCR1	chr6	-	chr6:31112566-31112661				chr6:31112565-31112566;chr6:31112661-31112662		18.18	9.09	13.04	NA	33.33	NA	NA	NA	NA	NA	NA	NA	0.00	NA	8.33	NA	NA	NA	9.09	15.79	14.29	NA	NA	NA	4.88	0.00	12.00	NA	0.00	NA	11.76	23.33	27.78	NA	NA	NA	9.09	13.77	4.68	0.962514	1.000000
K	intron_retention	C5orf45	chr5	-	chr5:179264205-179264759				chr5:179264204-179264205;chr5:179264759-179264760		95.03	92.35	97.10	93.31	93.32	94.18	97.96	100.00	93.94	98.00	98.33	93.75	95.00	96.23	100.00	95.95	91.11	92.86	87.64	91.72	90.17	93.66	93.83	95.36	97.39	96.08	96.15	94.95	94.46	96.43	87.80	88.02	88.14	94.53	94.60	94.44	93.67	95.56	1.88	0.817392	1.000000
K	jcn_only_AA	CC2D1A,ZNF444	chr19	+	chr19:14038844-14038939	chr19:14038844-14038936		chr19:14038937-14038939	chr19:14038939-14038940		100.00	93.55	92.31	NA	100.00	NA	86.67	92.86	89.47	NA	NA	NA	100.00	87.50	90.00	NA	90.00	NA	100.00	82.35	90.48	NA	85.71	NA	88.89	100.00	90.48	NA	100.00	NA	100.00	92.59	100.00	NA	85.71	100.00	96.78	96.43	-0.34	0.793439	0.910039
N	intron_retention		chr5	+	chr5:150647053-150649710				chr5:150647052-150647053;chr5:150649710-150649711		100.00	91.85	100.00	100.00	96.67	94.12	99.73	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.97	100.00	97.37	99.47	99.29	99.22	100.00	100.00	100.00	100.00	100.00	98.90	100.00	100.00	100.00	99.11	100.00	99.26	99.87	100.00	0.13	0.430699	1.000000
K	intron_retention	METTL17	chr14	+	chr14:21463061-21463323				chr14:21463060-21463061;chr14:21463323-21463324		36.84	35.14	38.89	NA	31.25	NA	17.65	NA	NA	NA	5.26	NA	12.90	NA	38.46	NA	13.64	NA	15.00	33.33	17.39	NA	25.71	58.33	20.00	30.77	51.61	NA	32.26	NA	30.00	42.86	20.00	38.89	42.42	31.82	18.82	32.05	13.22	0.278655	1.000000
K	alternative_last_exon	SNX20	chr16	-	chr16:50708030-50709680,chr16:50708007-50709680;chr16:50701953-50709680,chr16:50703060-50709680	chr16:50707986-50709680	chr16:50700211-50701952	chr16:50705536-50707985			95.57	96.47	95.51	93.75	95.65	97.67	96.88	96.36	96.71	94.44	94.87	97.92	96.00	96.63	95.30	95.45	92.11	94.12	96.67	94.32	95.90	NA	93.94	96.77	98.44	96.94	95.74	94.29	93.10	95.50	94.74	94.29	98.39	93.10	97.06	95.24	96.78	95.97	-0.81	0.045267	0.227559
N	jcn_only_AA	DHPS	chr19	-	chr19:12786920-12787921;chr19:12786893-12787921	chr19:12786957-12787921		chr19:12786893-12786919;chr19:12786920-12786956	chr19:12786892-12786893;chr19:12786919-12786920		100.00	92.86	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.91	100.00	100.00	100.00	100.00	96.88	95.65	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	0.00	0.363217	0.663989
N	alternative_acceptor	IFT43	chr14	+	chr14:76549633-76549800	chr14:76549633-76549782		chr14:76549783-76549800	chr14:76549800-76549801		4.76	0.00	0.00	0.00	3.23	3.23	NA	0.00	4.17	NA	0.00	NA	7.69	NA	0.00	NA	0.00	NA	3.92	0.00	1.85	NA	4.35	NA	0.00	0.00	5.88	NA	9.09	4.55	0.00	0.00	5.41	NA	0.00	8.33	3.92	0.00	-3.92	0.214265	0.671511
K	jcn_only_AD	CACNA2D4	chr12	-	chr12:1909605-1909778;chr12:1909605-1910214	chr12:1909605-1910208		chr12:1909779-1910208;chr12:1910209-1910214	chr12:1910208-1910209;chr12:1910214-1910215		100.00	100.00	100.00	NA	100.00	NA	97.14	NA	NA	NA	100.00	NA	100.00	100.00	NA	97.30	94.44	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	96.77	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
K	intron_retention		chr11	-	chr11:66331618-66332028				chr11:66331617-66331618;chr11:66332028-66332029		0.00	5.98	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	8.33	NA	NA	NA	0.00	NA	4.17	0.00	0.00	0.00	0.00	0.00	11.81	0.00	5.26	0.00	0.00	0.00	0.00	7.14	1.47	0.00	0.00	0.00	5.08	0.00	-5.08	0.191882	1.000000
K	intron_retention	DHX15	chr4	-	chr4:24538797-24541730				chr4:24538796-24538797;chr4:24541730-24541731		25.93	20.00	26.87	21.43	24.14	NA	2.00	7.41	8.70	2.70	4.23	6.00	1.79	7.14	11.76	5.56	3.61	6.12	NA	18.00	36.36	20.27	16.67	26.09	54.55	31.43	25.53	11.36	11.54	15.00	45.45	33.33	NA	22.22	16.67	25.51	11.00	21.96	10.96	0.982210	1.000000
N	jcn_only_AA	SCYL1	chr11	+	chr11:65305654-65305740;chr11:65305654-65305917	chr11:65305654-65305912		chr11:65305741-65305912;chr11:65305913-65305917	chr11:65305912-65305913;chr11:65305917-65305918		5.88	3.39	7.02	4.88	4.00	6.67	5.00	4.88	3.77	3.92	0.00	0.00	2.78	9.09	6.35	2.90	2.08	0.00	5.17	1.92	2.65	6.25	3.57	0.00	8.19	2.63	6.67	7.89	6.98	3.33	7.04	7.50	8.51	4.44	9.80	1.61	5.08	5.38	0.29	0.859849	0.944239
N	cassette	BECN1	chr17	-	chr17:40963816-40965965;chr17:40962947-40965965	chr17:40963816-40964248,chr17:40962947-40964248;chr17:40964375-40965965		chr17:40964249-40964374			3.28	0.00	2.47	0.00	0.00	7.69	0.00	4.88	3.39	1.92	2.67	0.00	1.28	2.50	1.79	0.00	1.25	0.00	0.00	0.00	0.00	3.33	0.00	2.86	NA	3.70	3.45	0.00	4.65	2.78	2.56	1.25	0.00	2.78	0.00	4.69	0.00	2.92	2.92	0.010311	0.314700
N	cassette	APOC1	chr19	+	chr19:45418475-45422429;chr19:45418207-45422429	chr19:45418207-45419446,chr19:45418475-45419446;chr19:45419728-45422429		chr19:45419447-45419727			100.00	95.67	94.00	96.55	94.86	97.62	97.52	99.36	99.37	97.97	95.84	97.89	99.27	100.00	100.00	97.46	98.91	99.03	97.01	95.12	97.44	97.32	95.65	98.25	94.61	100.00	93.80	94.81	90.25	95.69	98.04	97.32	93.98	96.91	94.96	98.64	96.34	99.68	3.34	0.058403	0.602403
K	intron_retention	MDM2	chr12	+	chr12:69236305-69237543				chr12:69236304-69236305;chr12:69237543-69237544		100.00	100.00	100.00	98.11	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	92.11	100.00	100.00	100.00	100.00	100.00	95.00	92.73	100.00	100.00	100.00	100.00	100.00	100.00	92.11	100.00	100.00	100.00	95.31	94.83	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.992913	1.000000
N	jcn_only_AA	GAK	chr4	-	chr4:844858-845537;chr4:844890-845537;chr4:844806-845537	chr4:844873-845537		chr4:844806-844857;chr4:844858-844872;chr4:844873-844889	chr4:844805-844806;chr4:844857-844858;chr4:844872-844873		94.74	95.97	95.00	97.47	98.97	98.73	100.00	97.62	98.44	98.18	96.23	96.67	96.88	97.96	96.05	94.55	100.00	94.44	94.81	95.38	95.56	95.08	98.89	96.23	97.65	95.76	95.29	94.83	100.00	93.85	94.44	96.64	96.15	95.83	96.30	93.62	96.52	95.57	-0.95	0.351604	0.663989
N	intron_retention		chr1	+	chr1:111726903-111727142				chr1:111726902-111726903;chr1:111727142-111727143		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	84.78	100.00	100.00	94.74	95.56	87.50	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.92	100.00	100.00	100.00	100.00	100.00	0.00	0.446669	1.000000
K	intron_retention	LRP1	chr12	+	chr12:57575075-57577161				chr12:57575074-57575075;chr12:57577161-57577162		0.00	14.63	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	3.57	0.00	5.88	0.00	0.00	0.00	7.69	NA	NA	0.00	8.33	0.00	2.27	0.00	5.88	0.00	-5.88	0.419119	1.000000
N	jcn_only_AD	AGTRAP	chr1	+	chr1:11809674-11810133;chr1:11808668-11810133	chr1:11808647-11810133		chr1:11808647-11808667;chr1:11808668-11809673	chr1:11808646-11808647;chr1:11808667-11808668		25.66	34.48	22.37	17.07	22.22	34.78	19.78	23.68	18.14	20.51	25.86	12.50	31.58	23.84	26.67	26.32	23.40	18.18	15.38	21.43	26.35	19.35	28.21	20.41	20.00	22.28	20.67	23.81	22.86	20.45	21.85	19.33	23.44	24.24	21.74	22.88	21.72	22.98	1.26	0.762030	0.877652
N	jcn_only_AA	SERPINB1	chr6	-	chr6:2836258-2836341;chr6:2833934-2836341;chr6:2836222-2836341;chr6:2836250-2836341;chr6:2836254-2836341	chr6:2836225-2836341		chr6:2833934-2836221;chr6:2836222-2836224;chr6:2836225-2836249;chr6:2836250-2836253;chr6:2836254-2836257	chr6:2833933-2833934;chr6:2836221-2836222;chr6:2836224-2836225;chr6:2836249-2836250;chr6:2836253-2836254		3.25	0.00	2.28	1.96	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.85	1.83	1.83	0.00	1.03	0.00	0.00	0.00	0.00	0.00	0.11	6.45	5.72	3.96	3.11	0.68	2.20	0.00	1.62	1.62	0.223025	0.663989
N	jcn_only_AA	FAM204A	chr10	-	chr10:120085752-120094625	chr10:120085756-120094625		chr10:120085752-120085755	chr10:120085751-120085752		100.00	86.67	96.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.43	100.00	100.00	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.253209	0.663989
K	cassette	NDUFS8	chr11	+	chr11:67800751-67803719	chr11:67800751-67803094;chr11:67803256-67803719		chr11:67803095-67803255			0.00	1.12	1.19	1.25	0.89	0.00	0.83	0.00	0.00	0.00	0.64	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.64	0.00	0.71	0.00	1.71	0.00	0.32	7.69	1.35	0.00	1.14	0.00	0.00	0.00	0.32	0.00	0.00	2.50	0.48	0.00	-0.48	0.589293	0.844083
K	intron_retention	RBM14-RBM4,RBM4	chr11	+	chr11:66411612-66413497				chr11:66411611-66411612;chr11:66413497-66413498		2.17	9.52	10.42	4.20	3.77	3.95	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	6.35	7.32	7.79	2.47	2.35	4.41	0.00	2.86	3.92	2.53	1.94	2.94	12.50	9.62	9.80	4.23	1.85	2.97	3.17	2.51	-0.66	0.999493	1.000000
K	intron_retention	CCNL1	chr3	-	chr3:156867175-156867273				chr3:156867174-156867175;chr3:156867273-156867274		6.16	5.45	6.57	0.00	2.33	0.00	0.00	2.27	0.00	0.00	0.00	1.82	0.00	1.85	0.00	1.75	0.00	2.08	0.00	6.58	5.17	3.97	3.23	2.82	0.00	2.41	2.54	0.91	0.00	0.50	11.17	6.22	3.23	3.17	4.17	2.33	0.00	4.29	4.29	0.312454	1.000000
K	intron_retention	STOML2	chr9	-	chr9:35100724-35100928				chr9:35100723-35100724;chr9:35100928-35100929		3.45	2.60	4.44	2.78	2.74	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	3.39	7.14	1.64	0.00	0.00	5.56	6.38	0.00	2.22	0.00	7.69	2.27	2.38	2.86	2.13	5.56	0.77	3.45	2.68	0.642588	1.000000
K	alternative_donor	CIC	chr19	+	chr19:42798451-42798755	chr19:42798457-42798755		chr19:42798451-42798456	chr19:42798450-42798451		61.54	52.00	40.38	NA	42.86	NA	54.55	46.67	56.00	68.75	48.39	NA	52.17	58.82	52.00	50.00	48.39	64.29	NA	50.00	44.44	45.45	58.82	NA	54.55	50.00	52.38	50.00	55.00	60.00	46.43	52.38	41.67	37.50	30.43	43.75	52.17	50.00	-2.17	0.731251	0.890213
N	jcn_only_AD	SLC25A28	chr10	-	chr10:101373682-101380289;chr10:101373682-101375209;chr10:101373682-101378795;chr10:101373682-101378998;chr10:101373682-101379483	chr10:101373682-101379801		chr10:101375210-101378795;chr10:101378796-101378998;chr10:101378999-101379483;chr10:101379484-101379801;chr10:101379802-101380289	chr10:101378795-101378796;chr10:101378998-101378999;chr10:101379483-101379484;chr10:101379801-101379802;chr10:101380289-101380290		100.00	100.00	98.57	NA	NA	NA	100.00	95.93	97.27	94.74	100.00	94.83	100.00	98.50	97.16	100.00	100.00	96.33	NA	89.06	93.75	100.00	88.89	96.43	100.00	97.27	100.00	97.37	100.00	97.98	91.11	92.41	NA	100.00	100.00	95.45	100.00	96.60	-3.40	0.044811	0.497155
N	cassette	TFPT	chr19	-	chr19:54611703-54617821;chr19:54611703-54617817	chr19:54611703-54613433;chr19:54613505-54617821,chr19:54613505-54617817		chr19:54613434-54613504			91.03	82.02	93.22	92.00	88.60	90.00	93.94	95.24	93.02	90.00	92.16	86.21	96.23	97.78	95.24	92.86	94.83	89.47	78.83	80.95	84.52	85.00	76.67	80.00	82.11	87.67	83.33	87.50	93.90	97.22	78.12	83.75	74.51	87.50	77.05	80.00	82.06	89.35	7.28	0.434719	0.741898
K	intron_retention	MLLT6	chr17	+	chr17:36874207-36875769				chr17:36874206-36874207;chr17:36875769-36875770		5.36	0.00	5.47	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.63	3.09	1.65	2.86	0.00	NA	1.56	5.88	2.78	2.50	9.26	12.50	2.04	7.14	3.03	0.00	3.70	3.45	5.49	NA	7.02	4.92	5.48	0.00	2.33	2.33	0.718015	1.000000
K	intron_retention	ABCD4	chr14	-	chr14:74753270-74753403				chr14:74753269-74753270;chr14:74753403-74753404		100.00	100.00	100.00	100.00	90.00	90.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	96.55	100.00	100.00	100.00	100.00	NA	93.62	100.00	100.00	NA	100.00	NA	100.00	94.12	92.45	100.00	94.44	100.00	96.55	100.00	3.45	0.180142	1.000000
N	cassette	TBC1D22A	chr22	+	chr22:47308085-47432966	chr22:47308085-47393529;chr22:47393606-47432966		chr22:47393530-47393605			100.00	100.00	100.00	NA	100.00	NA	100.00	92.31	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor	FMNL1	chr17	+	chr17:43308055-43309733	chr17:43308055-43309609		chr17:43309610-43309733	chr17:43309733-43309734		0.00	0.00	1.53	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.00	0.00	0.88	5.26	0.00	1.92	0.00	0.00	0.78	0.77	0.00	0.00	NA	0.00	0.71	0.00	1.20	1.71	0.00	0.00	0.00	0.00	0.175655	0.660713
N	jcn_only_AA	FNBP1	chr9	-	chr9:132662381-132662704	chr9:132662384-132662704		chr9:132662381-132662383	chr9:132662380-132662381		2.44	0.00	1.33	0.00	0.00	0.00	3.66	4.05	3.16	5.26	4.17	5.18	3.95	4.17	3.12	4.21	3.33	3.86	3.64	4.23	0.00	7.14	2.08	2.78	0.00	0.00	5.56	0.00	3.45	3.92	4.08	3.95	0.00	0.00	0.00	2.52	1.82	4.06	2.24	0.264993	0.663989
N	jcn_only_AD	CLEC7A	chr12	-	chr12:10280445-10282578	chr12:10280445-10280913		chr12:10280914-10282578	chr12:10282578-10282579		7.50	0.00	0.00	0.00	0.00	1.37	1.85	0.00	0.00	0.00	0.00	0.00	2.17	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.521188	0.754861
K	intron_retention		chr22	-	chr22:51065835-51065983				chr22:51065834-51065835;chr22:51065983-51065984		7.89	0.00	13.51	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	5.26	3.12	0.00	0.00	1.72	2.78	0.00	2.90	1.56	0.00	2.00	0.00	6.45	4.35	0.00	4.00	7.89	2.22	0.00	3.01	3.01	0.762899	1.000000
K	jcn_only_AA	AD000671.6,IGFLR1	chr19	-	chr19:36232125-36233296	chr19:36232130-36233296		chr19:36232125-36232129	chr19:36232124-36232125		29.51	39.91	36.05	32.81	37.29	39.74	43.55	51.72	52.54	41.07	48.42	38.64	42.11	43.75	53.12	50.00	42.99	46.00	36.27	41.56	40.91	37.50	38.98	40.35	33.33	42.62	43.97	44.58	42.04	43.97	36.45	35.42	35.96	35.71	41.94	46.91	38.09	42.09	4.00	0.504855	0.757962
N	jcn_only_AD	PLGRKT	chr9	-	chr9:5436695-5438212;chr9:5436695-5437922;chr9:5436695-5437788	chr9:5436695-5437631		chr9:5437632-5437788;chr9:5437789-5437922;chr9:5437923-5438212	chr9:5437788-5437789;chr9:5437922-5437923;chr9:5438212-5438213		0.00	0.00	2.65	0.00	0.00	0.00	0.00	2.65	2.37	2.30	3.49	3.70	0.00	2.44	1.96	0.00	0.00	3.03	0.00	0.68	3.53	2.13	0.00	4.00	NA	3.00	1.27	3.85	0.00	3.17	3.00	0.00	0.00	5.13	0.00	3.15	0.00	2.54	2.54	0.013735	0.285457
N	alternative_donor		chr12	-	chr12:7649730-7649865;chr12:7649730-7651410	chr12:7649730-7651463		chr12:7649866-7651410;chr12:7651411-7651463	chr12:7651410-7651411;chr12:7651463-7651464		97.37	82.43	98.65	48.28	71.57	18.42	99.04	96.81	98.01	97.88	98.28	98.32	98.85	96.34	97.83	95.37	98.13	98.05	40.00	95.99	76.47	96.72	96.22	98.08	84.30	96.04	98.63	94.99	95.16	90.05	89.83	96.80	63.64	97.81	98.06	97.88	83.37	96.19	12.82	0.121073	0.534451
N	jcn_only_AD	C1orf162	chr1	+	chr1:112019490-112019955	chr1:112019701-112019955		chr1:112019490-112019700	chr1:112019489-112019490		6.00	1.43	5.26	NA	3.80	NA	4.72	0.00	NA	4.44	5.49	0.00	7.50	0.00	NA	11.11	6.06	10.14	0.00	6.06	0.00	11.11	5.80	9.09	0.00	0.00	0.00	17.65	7.61	0.00	0.00	0.00	9.52	4.08	5.19	4.35	3.07	0.00	-3.07	0.396319	0.662038
N	alternative_acceptor	DGKZ	chr11	+	chr11:46400051-46400224;chr11:46400051-46400546;chr11:46400051-46400540	chr11:46400051-46400443		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		5.88	6.92	6.67	8.33	14.63	NA	0.00	0.00	0.00	NA	3.23	NA	2.44	0.00	0.00	0.00	3.70	NA	10.00	9.68	8.00	6.67	11.90	0.00	8.96	10.00	8.77	NA	7.32	NA	4.35	5.56	5.80	5.56	7.69	0.00	6.36	5.12	-1.24	0.775493	0.916888
N	cassette	FES	chr15	+	chr15:91433715-91434729;chr15:91433715-91434783	chr15:91433715-91434211;chr15:91434422-91434729,chr15:91434422-91434783		chr15:91434212-91434421			71.43	58.54	60.71	58.33	50.00	NA	91.94	100.00	100.00	80.00	88.89	NA	87.50	75.00	NA	78.57	80.00	NA	65.00	68.42	63.16	70.00	50.00	60.00	76.00	100.00	76.92	70.00	56.00	NA	85.71	65.52	38.98	41.18	62.50	73.33	70.50	80.35	9.85	0.197283	0.709176
K	intron_retention	IRF7	chr11	-	chr11:612801-612998				chr11:612800-612801;chr11:612998-612999		2.29	3.08	2.42	3.12	0.00	2.11	0.00	0.22	0.00	2.38	0.00	0.70	0.00	0.17	0.70	0.93	0.00	0.00	0.96	1.80	2.62	4.07	0.00	3.23	3.03	1.35	1.72	2.87	0.00	2.26	2.63	3.27	5.62	5.98	0.00	4.15	1.99	1.58	-0.42	0.802081	1.000000
K	intron_retention		chr17	-	chr17:72859369-72860017				chr17:72859368-72859369;chr17:72860017-72860018		11.54	10.81	15.56	NA	7.69	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	0.00	NA	NA	NA	12.12	17.65	14.15	NA	15.79	NA	6.38	22.22	9.52	NA	0.00	NA	20.29	15.86	17.97	25.00	10.34	7.69	8.60	18.97	10.37	0.170203	1.000000
N	alternative_acceptor	TACC3	chr4	+	chr4:1746560-1746674	chr4:1746560-1746638		chr4:1746639-1746674	chr4:1746674-1746675		0.00	2.50	3.45	4.00	1.87	0.00	0.00	NA	0.00	10.00	0.00	NA	0.00	NA	NA	0.00	0.00	NA	1.09	0.00	3.09	0.00	1.52	0.00	0.45	0.00	2.78	0.00	2.50	NA	5.00	0.00	1.46	0.00	1.61	0.00	0.77	0.00	-0.77	0.813174	0.933931
N	alternative_donor	RBM6	chr3	+	chr3:50104993-50106122;chr3:50105791-50106122	chr3:50103936-50106122		chr3:50103936-50104992;chr3:50104993-50105790	chr3:50103935-50103936;chr3:50104992-50104993		100.00	100.00	99.01	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	93.94	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	98.92	100.00	100.00	100.00	100.00	99.12	100.00	98.72	100.00	98.77	100.00	100.00	0.00	0.373901	0.650093
K	intron_retention		chr6	+	chr6:33383107-33383366				chr6:33383106-33383107;chr6:33383366-33383367		3.45	4.55	5.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	2.41	1.41	0.00	1.79	0.00	0.00	3.75	2.06	0.00	2.94	0.00	3.80	3.97	6.38	2.63	2.50	0.00	0.00	2.93	2.93	0.865752	1.000000
N	jcn_only_AA	TSC22D4	chr7	-	chr7:100075434-100076416;chr7:100075083-100076416;chr7:100075825-100076416;chr7:100075828-100076416;chr7:100075931-100076416	chr7:100075086-100076416		chr7:100075083-100075085;chr7:100075086-100075433;chr7:100075434-100075824;chr7:100075825-100075827;chr7:100075828-100075930	chr7:100075082-100075083;chr7:100075085-100075086;chr7:100075433-100075434;chr7:100075824-100075825;chr7:100075827-100075828		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.67	0.00	0.00	0.00	0.00	1.04	2.86	3.70	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	NA	0.00	2.38	0.00	0.00	0.00	2.86	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.649334	0.844334
K	intron_retention	C21orf33,CH507-9B2.3	chr21	+	chr21:45557179-45560131				chr21:45557178-45557179;chr21:45560131-45560132		5.26	3.12	5.88	13.33	2.38	20.00	1.79	0.00	0.00	0.00	2.56	0.00	1.83	4.35	3.70	3.92	2.08	0.00	2.38	0.00	0.00	0.00	2.27	NA	0.00	0.00	0.00	0.00	4.35	15.38	NA	3.70	4.26	3.70	4.26	0.00	2.10	0.00	-2.10	0.500901	1.000000
N	cassette	ADRM1	chr20	+	chr20:60883235-60883710	chr20:60883235-60883423;chr20:60883527-60883710		chr20:60883424-60883526			80.66	79.21	77.71	81.20	73.16	85.52	98.88	97.69	97.09	97.42	95.76	96.67	98.17	100.00	97.58	95.41	94.74	95.33	78.72	85.53	87.74	89.29	74.46	89.58	78.61	92.26	87.12	91.50	87.21	94.95	82.85	78.66	66.96	83.33	76.26	89.79	78.97	88.90	9.93	0.321842	0.709176
N	jcn_only_AA	CFLAR	chr2	+	chr2:201983625-201994451;chr2:201983625-201983750	chr2:201983625-201997751					6.25	NA	2.27	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	2.00	0.00	0.00	0.00	NA	4.65	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	NA	0.00	9.09	0.00	0.00	0.00	0.00	3.17	0.00	4.96	4.96	0.021201	0.562327
N	jcn_only_AA	RPL9	chr4	-	chr4:39456600-39458025;chr4:39456565-39458025	chr4:39456550-39458025		chr4:39456550-39456564;chr4:39456565-39456599	chr4:39456549-39456550;chr4:39456564-39456565		5.10	4.92	7.56	5.88	5.49	5.23	3.45	6.25	3.43	1.40	1.34	1.78	3.31	2.03	3.16	2.97	1.16	2.09	2.27	1.48	3.24	1.05	0.66	0.84	4.40	3.59	4.31	1.30	1.33	1.31	1.10	3.05	2.58	3.90	3.43	4.82	3.38	2.81	-0.57	0.815155	0.925199
K	jcn_only_AD	STX10	chr19	-	chr19:13255486-13255581	chr19:13255486-13255577		chr19:13255578-13255581	chr19:13255581-13255582		97.37	98.58	100.00	100.00	97.96	100.00	100.00	100.00	94.74	100.00	100.00	100.00	98.75	100.00	NA	100.00	97.73	100.00	98.51	100.00	97.56	100.00	97.59	100.00	96.91	100.00	95.12	100.00	98.78	100.00	100.00	94.12	98.40	100.00	100.00	100.00	98.55	100.00	1.45	0.112242	0.646283
N	alternative_acceptor	UBQLN1	chr9	-	chr9:86278959-86279944	chr9:86279164-86279944		chr9:86278959-86279163	chr9:86278958-86278959		4.00	0.00	3.60	10.00	0.00	NA	0.00	0.98	0.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	1.37	9.52	3.51	0.00	3.70	NA	2.94	2.82	0.00	0.00	0.00	14.00	5.19	0.00	3.06	2.41	5.62	0.00	2.16	2.16	0.124664	0.611000
K	intron_retention	DDX41	chr5	-	chr5:176940486-176940685				chr5:176940485-176940486;chr5:176940685-176940686		0.00	2.11	5.88	0.00	1.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	2.13	0.00	0.00	2.17	1.79	3.70	4.05	2.78	0.00	0.00	3.70	0.00	3.51	0.00	14.63	7.59	4.69	0.00	4.92	3.57	0.00	0.00	0.00	0.731725	1.000000
N	jcn_only_AD		chr6	-	chr6:86329136-86332304	chr6:86329136-86332199		chr6:86332200-86332304	chr6:86332304-86332305		100.00	86.67	93.02	100.00	95.65	NA	97.78	98.18	97.33	95.45	96.09	97.85	97.90	94.29	97.78	97.03	97.79	95.58	100.00	91.11	100.00	95.28	97.25	91.94	NA	100.00	93.85	97.25	100.00	100.00	90.32	88.89	90.00	88.73	93.10	89.51	97.78	96.24	-1.54	0.717898	0.853669
N	jcn_only_AA	KLC1,RP11-73M18.2	chr14	+	chr14:104143861-104145720;chr14:104143861-104145645	chr14:104143861-104145744		chr14:104145646-104145720;chr14:104145721-104145744	chr14:104145720-104145721;chr14:104145744-104145745		10.00	11.02	14.58	15.25	15.24	11.11	13.89	12.63	15.38	10.84	9.47	11.59	11.32	12.82	17.12	17.31	15.32	16.67	15.07	11.11	9.48	15.09	14.29	12.24	18.09	8.91	10.68	10.94	11.01	8.33	11.59	14.29	10.11	16.07	12.12	13.22	12.61	11.35	-1.26	0.174854	0.663989
K	intron_retention		chr5	-	chr5:176728989-176729128				chr5:176728988-176728989;chr5:176729128-176729129		4.62	7.50	8.68	9.80	7.92	4.00	0.00	0.00	1.92	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.38	5.88	4.60	16.67	9.80	16.13	3.57	3.51	5.78	7.89	9.30	3.81	6.31	6.52	6.81	9.09	6.82	10.34	5.19	4.06	-1.12	0.966063	1.000000
N	jcn_only_AA	STARD3	chr17	+	chr17:37814776-37814961;chr17:37814776-37814991	chr17:37814776-37814974		chr17:37814962-37814974;chr17:37814975-37814991	chr17:37814974-37814975;chr17:37814991-37814992		96.15	91.49	95.83	100.00	92.86	NA	100.00	96.97	100.00	93.48	100.00	96.00	97.67	94.12	100.00	100.00	100.00	100.00	100.00	97.30	100.00	91.43	93.85	90.62	100.00	92.73	94.44	100.00	96.49	88.24	78.79	92.11	86.21	93.62	93.06	97.50	98.84	95.14	-3.70	0.407183	0.679554
N	alternative_acceptor		chr8	.	chr8:15978690-16001066;chr8:15998555-16001066;chr8:15998564-16001066;chr8:15998566-16001066	chr8:15998463-16001066		chr8:15978690-15998462;chr8:15998463-15998554;chr8:15998555-15998563;chr8:15998564-15998565	chr8:15978689-15978690;chr8:15998462-15998463;chr8:15998554-15998555;chr8:15998563-15998564		0.00	8.33	NA	NA	3.70	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.72	1.69	14.29	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	13.33	0.00	0.00	0.00	8.33	0.00	-8.33	0.081517	0.585944
N	alternative_acceptor	SH3BP1	chr22	+	chr22:38040968-38041338;chr22:38040968-38041371	chr22:38040968-38041408		chr22:38041339-38041371;chr22:38041372-38041408	chr22:38041371-38041372;chr22:38041408-38041409		0.00	9.52	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.363217	0.709013
K	cassette	PPA2	chr4	-	chr4:106345480-106367539	chr4:106345480-106359106;chr4:106359194-106367539		chr4:106359107-106359193			100.00	94.12	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	96.72	100.00	98.55	91.67	100.00	100.00	94.83	100.00	100.00	100.00	100.00	91.67	100.00	96.43	100.00	94.74	96.36	100.00	100.00	100.00	100.00	100.00	92.31	93.33	97.01	97.78	99.28	100.00	0.72	0.909187	0.973322
K	intron_retention		chr4	+	chr4:674377-674880				chr4:674376-674377;chr4:674880-674881		15.00	12.07	15.22	10.42	5.88	5.83	NA	NA	0.00	NA	NA	NA	NA	NA	5.88	NA	NA	NA	6.59	8.33	2.74	28.57	20.83	9.09	8.42	16.67	11.11	0.00	20.00	10.00	10.34	11.48	10.29	22.73	31.82	22.86	9.36	12.67	3.31	0.748911	1.000000
K	jcn_only_AD	CD37	chr19	+	chr19:49838833-49838970	chr19:49838867-49838970		chr19:49838833-49838866	chr19:49838832-49838833		89.47	93.02	90.29	100.00	95.65	100.00	94.49	95.90	94.44	92.25	92.86	93.43	92.89	92.25	92.31	94.21	93.94	95.24	97.62	91.67	93.33	93.94	94.02	90.32	72.50	95.52	90.65	97.22	93.53	96.69	94.29	95.45	94.74	96.23	90.65	91.67	93.75	93.27	-0.48	0.574528	0.788093
K	intron_retention	CCNL2	chr1	-	chr1:1323446-1325609				chr1:1323445-1323446;chr1:1325609-1325610		6.52	0.00	3.41	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	8.57	2.50	0.00	2.30	5.08	7.69	2.63	2.53	0.00	1.92	2.08	6.00	6.25	2.50	4.23	3.53	5.95	0.00	6.00	6.00	0.974022	1.000000
N	alternative_last_exon	MBD1	chr18	-	chr18:47796286-47797838,chr18:47796177-47797838;chr18:47794034-47797838	chr18:47796182-47797838,chr18:47796189-47797838	chr18:47793252-47794033	chr18:47795927-47796181			94.12	NA	86.96	NA	90.00	NA	93.75	100.00	88.89	93.33	88.89	90.00	100.00	80.95	86.96	92.59	85.71	92.31	90.00	91.67	60.00	94.12	87.50	94.44	46.15	94.29	90.32	87.50	90.48	90.00	95.00	93.94	NA	93.75	92.31	100.00	91.88	94.21	2.33	0.471614	0.619765
K	intron_retention	NISCH	chr3	+	chr3:52511659-52512112				chr3:52511658-52511659;chr3:52512112-52512113		4.76	2.78	6.56	NA	10.00	NA	5.56	5.88	0.00	NA	4.55	NA	3.66	6.25	0.00	20.00	3.17	NA	NA	14.29	NA	NA	0.00	NA	15.38	0.00	9.38	NA	16.67	NA	NA	5.56	NA	11.76	10.34	12.50	4.61	5.88	1.27	0.414137	1.000000
K	alternative_acceptor	GIT2	chr12	-	chr12:110385310-110388971	chr12:110386652-110388971		chr12:110385310-110386651	chr12:110385309-110385310		43.48	92.06	29.41	100.00	91.43	NA	22.64	11.76	12.12	29.17	23.19	16.67	25.40	7.89	22.58	30.77	22.22	NA	100.00	28.57	74.07	NA	65.71	NA	100.00	31.82	44.00	50.00	62.07	NA	66.67	55.88	94.55	57.14	65.00	47.37	93.31	30.20	-63.11	0.050648	0.570243
N	alternative_last_exon	CTSD,RP11-295K3.1	chr11	-	chr11:1774912-1775032,chr11:1774892-1775032;chr11:1756660-1775032;chr11:1769350-1775032	chr11:1774901-1775032	chr11:1753640-1756659;chr11:1768897-1769349	chr11:1773982-1774900			97.04	99.01	94.74	99.58	98.90	99.83	99.55	99.43	99.22	99.44	99.40	99.47	99.77	99.48	99.64	99.70	99.67	99.59	99.62	98.34	99.48	98.95	98.39	98.80	99.76	99.04	98.18	99.62	99.31	99.81	98.64	98.14	99.51	98.81	98.58	98.93	99.59	98.84	-0.75	0.065698	0.271550
K	alternative_donor	ZMIZ2	chr7	+	chr7:44805179-44805762	chr7:44805656-44805762		chr7:44805179-44805655	chr7:44805178-44805179		25.53	17.65	34.52	NA	14.29	NA	6.25	12.12	10.94	10.53	8.70	15.38	30.00	10.17	19.59	7.69	16.13	18.75	26.67	22.64	24.24	31.25	18.75	35.00	33.33	42.22	27.59	25.00	18.75	30.77	27.50	25.00	NA	46.15	32.69	30.36	26.67	24.09	-2.59	0.933751	0.984606
K	cassette	AGTRAP	chr1	+	chr1:11805895-11807496	chr1:11805895-11806044;chr1:11806281-11807496		chr1:11806045-11806280			2.20	2.27	7.83	5.88	3.33	NA	3.26	6.77	7.22	3.17	3.45	2.38	2.63	5.04	6.11	8.33	2.90	5.41	0.00	4.08	2.63	7.69	3.45	3.70	0.00	5.61	4.80	6.90	3.57	4.65	5.56	4.76	3.57	6.38	3.45	12.20	2.45	5.30	2.85	0.009407	0.304781
K	intron_retention	PNPLA2	chr11	+	chr11:823588-823693				chr11:823587-823588;chr11:823693-823694		2.33	3.60	5.04	7.14	4.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	0.00	5.08	4.65	4.12	0.00	2.86	5.00	4.26	3.12	5.17	0.00	10.00	NA	7.69	4.49	7.77	0.00	5.26	3.33	3.93	2.73	-1.20	0.780923	1.000000
N	alternative_acceptor	KIAA0196	chr8	-	chr8:126051202-126052036	chr8:126051219-126052036		chr8:126051202-126051218	chr8:126051201-126051202		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	NA	NA	4.35	0.00	0.00	0.00	0.00	NA	5.88	3.23	NA	0.00	NA	5.00	2.50	0.00	0.00	2.08	0.00	0.00	2.17	2.17	0.181258	0.660713
N	cassette	RAB34	chr17	-	chr17:27042920-27045139;chr17:27042920-27043920;chr17:27042920-27044230	chr17:27042920-27043010;chr17:27043077-27045139,chr17:27043077-27043920,chr17:27043077-27044230		chr17:27043011-27043076			85.25	74.07	86.15	NA	86.05	NA	100.00	94.44	96.97	100.00	96.15	NA	92.86	100.00	96.36	100.00	90.00	100.00	71.43	86.67	91.78	NA	86.11	NA	100.00	100.00	93.23	100.00	91.89	100.00	83.87	86.60	75.00	NA	90.48	88.24	83.93	90.56	6.62	0.358125	0.709176
K	intron_retention	ANKHD1,ANKHD1-EIF4EBP3	chr5	+	chr5:139921867-139928490				chr5:139921866-139921867;chr5:139928490-139928491		4.55	6.25	8.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	5.00	0.00	0.00	4.35	0.00	11.11	0.00	2.86	0.00	0.00	0.00	10.53	0.00	3.85	4.55	5.88	4.55	1.93	2.27	0.35	0.996100	1.000000
K	intron_retention	UROD	chr1	+	chr1:45479464-45479580				chr1:45479463-45479464;chr1:45479580-45479581		8.33	4.17	13.16	7.69	4.23	0.00	0.00	0.00	1.45	0.00	0.00	0.00	1.11	2.86	1.35	1.23	2.99	0.00	3.90	7.32	2.41	11.63	4.55	4.76	1.37	5.56	7.37	5.56	5.56	5.26	14.63	7.92	3.06	5.88	8.33	6.10	2.21	6.44	4.22	0.280300	1.000000
K	intron_retention	DAB2	chr5	-	chr5:39381719-39382719				chr5:39381718-39381719;chr5:39382719-39382720		12.05	23.33	10.67	NA	9.38	NA	1.38	1.98	1.53	2.09	1.88	0.00	1.60	0.00	3.45	2.65	2.30	0.00	NA	7.94	3.12	10.61	10.00	9.09	NA	9.62	9.85	8.51	6.81	15.38	3.45	7.69	0.00	7.69	13.33	6.06	1.49	5.70	4.21	0.916299	1.000000
N	alternative_acceptor	RAPGEF1	chr9	-	chr9:134465394-134467485;chr9:134466646-134467485	chr9:134465366-134467485		chr9:134465366-134465393;chr9:134465394-134466645	chr9:134465365-134465366;chr9:134465393-134465394		96.23	93.33	97.96	NA	100.00	NA	100.00	98.94	99.17	99.03	98.93	98.21	99.18	99.12	98.66	98.95	98.86	98.36	NA	98.28	100.00	97.22	98.02	97.14	100.00	96.15	98.55	97.73	98.33	100.00	96.43	96.97	NA	98.36	97.16	97.64	99.59	97.36	-2.23	0.743375	0.903518
K	alternative_acceptor	CDV3,FNDC3B	chr3	+	chr3:133302995-133305412	chr3:133302995-133305406		chr3:133305407-133305412	chr3:133305412-133305413		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.05	100.00	98.96	100.00	97.94	100.00	100.00	100.00	100.00	91.89	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	91.30	100.00	100.00	100.00	96.77	91.58	100.00	100.00	0.00	0.306393	0.709013
N	alternative_acceptor	CD22	chr19	+	chr19:50339203-50339488	chr19:50339203-50339482		chr19:50339483-50339488	chr19:50339488-50339489		97.92	98.00	100.00	100.00	96.97	96.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.87	100.00	NA	100.00	100.00	100.00	97.62	97.06	NA	100.00	NA	90.62	94.44	100.00	100.00	100.00	100.00	100.00	93.94	94.74	100.00	100.00	100.00	99.00	97.90	-1.10	0.684677	0.881289
N	jcn_only_AD	PLD2	chr17	+	chr17:4721640-4721788;chr17:4721681-4721788;chr17:4721702-4721788	chr17:4721686-4721788		chr17:4721640-4721680;chr17:4721681-4721685;chr17:4721686-4721701	chr17:4721639-4721640;chr17:4721680-4721681;chr17:4721685-4721686		0.00	0.00	3.39	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	TNK2	chr3	-	chr3:195591059-195593759				chr3:195591058-195591059;chr3:195593759-195593760		3.33	4.20	5.56	NA	1.79	0.00	0.00	0.00	0.00	NA	0.00	NA	3.70	1.10	1.85	NA	0.00	NA	4.29	3.16	2.56	NA	0.00	0.00	6.02	5.68	2.56	0.00	4.88	0.00	4.35	3.39	3.85	5.26	0.00	2.04	4.03	3.25	-0.78	0.986075	1.000000
K	intron_retention	MBD4	chr3	-	chr3:129151450-129151940				chr3:129151449-129151450;chr3:129151940-129151941		2.13	0.00	6.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	4.65	0.00	0.00	1.77	NA	0.00	5.63	1.82	0.00	1.31	0.00	4.65	5.21	0.00	1.75	3.73	4.35	0.00	3.39	3.39	0.109456	1.000000
N	alternative_donor	SRRM2	chr16	+	chr16:2820211-2820352;chr16:2820229-2820352	chr16:2819286-2820352		chr16:2819286-2820210;chr16:2820211-2820228	chr16:2819285-2819286;chr16:2820210-2820211		83.87	90.48	80.34	76.83	87.15	82.26	92.42	91.84	95.51	93.15	93.02	90.32	86.81	94.64	86.60	89.19	91.18	88.46	92.73	85.09	86.92	77.78	87.24	64.37	85.71	75.95	80.12	76.67	80.92	71.26	82.26	81.31	92.47	74.02	78.42	65.50	91.45	84.48	-6.97	0.182027	0.563271
K	jcn_only_AD	PSMB7	chr9	-	chr9:127177215-127177642;chr9:127177215-127177391	chr9:127177215-127177409		chr9:127177392-127177409;chr9:127177410-127177642	chr9:127177409-127177410;chr9:127177642-127177643		1.03	0.00	2.53	0.00	2.13	0.00	0.00	0.00	2.11	1.28	0.00	0.00	0.00	1.94	0.60	1.00	0.00	0.00	0.00	5.38	0.00	1.41	0.00	0.00	0.00	3.94	1.33	1.67	0.00	0.00	5.48	1.27	0.00	3.30	0.00	2.25	0.00	2.94	2.94	0.025675	0.367259
K	intron_retention	GRK6	chr5	+	chr5:176863283-176863393				chr5:176863282-176863283;chr5:176863393-176863394		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.38	NA	0.00	0.00	1.43	0.00	0.00	NA	5.88	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA	BIN2	chr12	-	chr12:51678572-51681891	chr12:51681817-51681891		chr12:51678572-51681816	chr12:51678571-51678572		4.00	0.00	3.92	0.00	0.00	NA	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	4.04	0.00	0.00	0.00	0.00	7.22	6.03	7.69	0.00	0.00	0.00	3.42	0.00	0.00	0.00	0.00	0.00	0.83	0.83	0.133507	0.663989
K	intron_retention		chr15	-	chr15:72492997-72495362				chr15:72492996-72492997;chr15:72495362-72495363		73.68	61.54	77.46	57.89	46.94	58.33	5.56	NA	NA	8.57	17.14	10.53	13.64	40.00	27.27	15.00	18.18	21.74	45.00	82.76	62.22	64.71	60.71	61.54	40.00	76.67	65.00	48.28	61.76	53.33	70.00	69.23	57.14	59.57	67.86	57.78	42.50	73.68	31.18	0.087241	1.000000
K	intron_retention	R3HDM4	chr19	-	chr19:897541-899439				chr19:897540-897541;chr19:899439-899440		8.70	0.00	6.76	4.76	4.55	11.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	6.67	4.17	7.32	6.52	7.02	0.00	5.17	12.86	5.56	3.03	3.57	6.45	5.77	18.18	4.65	2.78	8.86	0.00	5.81	5.81	0.128606	1.000000
N	alternative_acceptor	SYMPK	chr19	-	chr19:46319832-46320055;chr19:46319873-46320055	chr19:46319836-46320055		chr19:46319832-46319835;chr19:46319836-46319872	chr19:46319831-46319832;chr19:46319835-46319836		100.00	93.88	100.00	94.44	90.91	93.94	93.75	100.00	100.00	100.00	100.00	NA	100.00	100.00	96.55	NA	100.00	NA	95.45	100.00	97.92	NA	95.24	NA	100.00	NA	96.30	NA	100.00	93.33	100.00	97.62	92.54	NA	100.00	100.00	94.66	100.00	5.34	0.028947	0.546324
K	intron_retention	DCXR	chr17	-	chr17:79995424-79995506				chr17:79995423-79995424;chr17:79995506-79995507		NA	0.00	6.67	NA	0.00	0.00	2.13	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	0.00	3.23	0.00	5.45	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	12.50	6.45	0.00	0.00	0.00	1.06	0.00	-1.06	0.903566	1.000000
N	jcn_only_AD	PCMT1	chr6	+	chr6:150123561-150131751;chr6:150131260-150131751;chr6:150123553-150131751	chr6:150123506-150131751		chr6:150123506-150123552;chr6:150123553-150123560;chr6:150123561-150131259	chr6:150123505-150123506;chr6:150123552-150123553;chr6:150123560-150123561		66.95	69.64	68.97	58.97	64.52	50.00	57.50	53.33	54.76	48.98	47.62	47.37	50.96	44.57	42.22	41.94	34.29	50.00	60.82	52.21	55.84	54.96	50.00	46.15	69.49	45.22	59.46	56.92	49.06	48.10	59.83	57.66	64.23	51.75	55.32	53.80	62.53	52.77	-9.76	0.097654	0.639657
K	intron_retention		chr1	-	chr1:16269690-16269893				chr1:16269689-16269690;chr1:16269893-16269894		9.80	8.00	14.75	13.73	11.11	10.00	0.00	0.00	6.25	4.17	4.17	2.08	0.00	6.25	7.81	4.08	2.04	2.70	NA	9.09	13.21	13.04	17.39	11.63	NA	6.78	12.07	13.95	16.00	11.11	11.76	10.45	11.76	15.15	8.70	13.33	4.00	7.94	3.94	0.836123	1.000000
K	intron_retention		chr6	+	chr6:35436805-35437157				chr6:35436804-35436805;chr6:35437157-35437158		8.33	2.20	9.26	8.90	5.69	5.74	0.81	0.00	1.72	1.21	1.06	0.39	0.43	0.00	2.60	2.49	1.17	0.18	3.11	9.62	3.90	17.20	9.45	12.09	2.01	0.00	7.69	5.67	4.72	4.28	20.45	13.95	4.92	5.24	6.57	3.27	2.10	4.17	2.06	0.532902	1.000000
N	alternative_acceptor	SOD2	chr6	-	chr6:159991268-160103505;chr6:160101320-160103505;chr6:160100331-160103505;chr6:160016237-160103505;chr6:160100398-160103505;chr6:160100367-160103505;chr6:160083698-160103505;chr6:160030099-160103505;chr6:159934614-160103505;chr6:160100311-160103505;chr6:160100377-160103505;chr6:160052794-160103505;chr6:160037295-160103505	chr6:160101368-160103505		chr6:159934614-159991267;chr6:159991268-160016236;chr6:160016237-160030098;chr6:160030099-160037294;chr6:160037295-160052793;chr6:160052794-160083697;chr6:160083698-160100310;chr6:160100311-160100330;chr6:160100331-160100366;chr6:160100367-160100376;chr6:160100377-160100397;chr6:160100398-160101319;chr6:160101320-160101367	chr6:159934613-159934614;chr6:159991267-159991268;chr6:160016236-160016237;chr6:160030098-160030099;chr6:160037294-160037295;chr6:160052793-160052794;chr6:160083697-160083698;chr6:160100310-160100311;chr6:160100330-160100331;chr6:160100366-160100367;chr6:160100376-160100377;chr6:160100397-160100398;chr6:160101319-160101320		37.23	28.57	69.87	23.77	27.50	9.74	NA	42.19	42.86	39.05	45.45	40.46	NA	38.46	65.12	41.30	45.45	19.81	22.73	37.23	26.28	38.12	54.55	68.24	18.18	59.81	57.06	36.88	34.62	31.46	31.43	62.10	23.81	64.14	68.69	57.49	23.27	37.84	14.57	0.005436	0.405868
N	jcn_only_AD	LPCAT2	chr16	+	chr16:55565776-55566735	chr16:55565887-55566735		chr16:55565776-55565886	chr16:55565775-55565776		84.85	NA	91.30	NA	78.26	NA	98.75	92.96	100.00	100.00	93.51	100.00	97.25	91.04	NA	100.00	95.65	100.00	76.92	100.00	NA	NA	90.00	NA	NA	73.91	71.43	NA	90.48	NA	NA	NA	71.43	100.00	75.86	95.45	87.09	91.04	3.95	0.776386	0.889989
K	cassette	CCDC142,MRPL53	chr2	-	chr2:74699380-74699695	chr2:74699380-74699484;chr2:74699598-74699695		chr2:74699485-74699597			96.00	95.80	93.85	94.83	95.20	94.95	97.83	100.00	96.20	96.92	96.67	91.67	97.03	97.44	97.56	96.67	95.35	96.36	96.49	94.44	97.73	91.89	96.05	100.00	96.88	100.00	92.96	95.24	100.00	100.00	93.48	95.77	95.10	95.35	94.83	96.83	96.69	96.72	0.03	0.765634	0.926838
K	cassette	ADAM8	chr10	-	chr10:135076738-135080855	chr10:135076738-135077191;chr10:135077270-135080855		chr10:135077192-135077269			75.00	67.31	75.00	75.00	77.63	75.86	90.00	91.80	89.29	94.23	92.73	94.23	92.50	91.67	92.22	91.78	93.18	92.73	66.67	74.55	86.52	68.97	56.82	70.97	73.53	87.72	72.73	85.37	85.71	91.84	73.68	71.58	63.64	74.00	80.00	80.88	70.42	81.36	10.94	0.307496	0.709176
N	cassette	PDCD6	chr5	+	chr5:272888-311407;chr5:304337-311407	chr5:272888-306716,chr5:304337-306716;chr5:306870-311407		chr5:306717-306869			100.00	100.00	96.97	NA	97.37	NA	100.00	97.14	97.92	92.50	98.80	100.00	100.00	100.00	96.00	94.23	98.89	94.74	100.00	96.77	100.00	96.15	100.00	100.00	100.00	100.00	98.11	96.97	100.00	95.00	96.67	95.65	100.00	97.37	96.77	100.00	100.00	98.57	-1.43	0.076466	0.640086
K	intron_retention	UROD	chr1	+	chr1:45480679-45481008				chr1:45480678-45480679;chr1:45481008-45481009		4.23	2.66	2.13	2.20	3.68	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	2.61	6.35	1.95	4.00	4.42	2.27	3.04	0.00	3.92	1.82	4.07	4.29	8.11	6.45	2.75	2.27	4.90	3.33	2.63	2.12	-0.52	0.895668	1.000000
N	jcn_only_AD		chr13	-	chr13:51942035-51943129	chr13:51942035-51943074		chr13:51943075-51943129	chr13:51943129-51943130		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.657607
N	coord_cassette	AAMP	chr2	-	chr2:219130185-219131165	chr2:219130185-219130301;chr2:219130406-219130553;chr2:219130670-219131165		chr2:219130302-219130405;chr2:219130554-219130669			100.00	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	93.75	NA	NA	100.00	100.00	NA	100.00	NA	84.62	80.95	100.00	100.00	92.86	NA	100.00	100.00	0.00	0.373901	0.643829
K	cassette	C11orf73	chr11	+	chr11:86013521-86048420	chr11:86013521-86017286;chr11:86017525-86048420		chr11:86017287-86017524			100.00	100.00	100.00	85.71	96.67	84.21	91.89	94.74	90.91	100.00	93.55	100.00	89.74	100.00	92.31	95.00	95.00	NA	88.24	91.30	92.11	85.71	91.43	85.71	80.00	100.00	91.67	92.86	93.94	100.00	89.47	93.33	92.59	100.00	93.94	90.00	90.81	97.37	6.56	0.128795	0.709176
K	cassette	PNKP	chr19	-	chr19:50364953-50365300	chr19:50364953-50365028;chr19:50365139-50365300		chr19:50365029-50365138			100.00	98.00	95.65	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	NA	93.75	NA	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	97.78	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	94.44	92.31	100.00	99.00	100.00	1.00	0.139948	0.709176
N	alternative_acceptor	LRRC59	chr17	-	chr17:48460597-48462478	chr17:48460942-48462478		chr17:48460597-48460941	chr17:48460596-48460597		2.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.30	0.00	0.00	0.00	1.79	0.00	0.86	1.11	0.66	NA	0.00	0.00	0.00	0.00	0.00	2.13	6.52	3.33	1.25	1.64	0.00	0.00	0.90	0.90	0.700219	0.886757
N	cassette	MGST3	chr1	+	chr1:165619202-165624604;chr1:165621273-165624604	chr1:165621273-165623515,chr1:165619202-165623515;chr1:165623589-165624604		chr1:165623516-165623588			99.45	100.00	98.50	98.64	100.00	99.08	99.70	98.94	100.00	100.00	99.50	100.00	98.77	94.90	100.00	100.00	99.72	99.56	98.48	100.00	99.70	100.00	99.46	99.47	99.05	97.87	99.38	100.00	99.31	98.31	96.36	97.73	97.83	98.76	99.27	100.00	98.91	98.41	-0.50	0.265685	0.709176
K	intron_retention	WDR83	chr19	+	chr19:12781100-12781376				chr19:12781099-12781100;chr19:12781376-12781377		0.00	21.43	27.27	0.00	0.00	NA	4.76	NA	NA	NA	0.00	NA	0.00	NA	NA	0.00	NA	NA	14.29	9.52	11.76	14.29	9.09	NA	0.00	15.38	23.08	NA	8.70	NA	21.43	18.92	9.52	18.75	17.24	20.00	7.14	12.45	5.31	0.784261	1.000000
N	jcn_only_AA	ING4	chr12	-	chr12:6761476-6761827;chr12:6761582-6761827	chr12:6761585-6761827		chr12:6761476-6761581;chr12:6761582-6761584	chr12:6761475-6761476;chr12:6761581-6761582		100.00	100.00	95.12	NA	94.74	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.74	94.74	NA	88.46	NA	100.00	100.00	88.46	NA	93.33	NA	100.00	97.37	91.18	NA	93.33	NA	100.00	97.22	95.24	NA	95.65	100.00	100.00	100.00	0.00	0.672747	0.854354
N	jcn_only_AD	COMT	chr22	+	chr22:19929699-19948721;chr22:19938576-19948721;chr22:19945265-19948721;chr22:19946899-19948721;chr22:19945531-19948721	chr22:19929421-19948721		chr22:19929421-19929698;chr22:19929699-19938575;chr22:19938576-19945264;chr22:19945265-19945530;chr22:19945531-19946898	chr22:19929420-19929421;chr22:19929698-19929699;chr22:19938575-19938576;chr22:19945264-19945265;chr22:19945530-19945531		100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.61	100.00	100.00	100.00	98.89	100.00	100.00	86.08	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.65	100.00	100.00	100.00	98.39	100.00	100.00	100.00	100.00	100.00	98.77	100.00	100.00	0.00	0.174745	0.657607
N	alternative_donor	MFSD7	chr4	-	chr4:680480-682781	chr4:680480-681418		chr4:681419-682781	chr4:682781-682782		9.09	10.00	7.14	6.67	8.57	16.00	4.08	4.55	0.00	5.00	7.69	9.09	10.34	7.14	7.14	7.41	20.00	10.00	10.34	9.09	5.00	6.67	10.71	7.69	8.51	10.53	5.56	7.14	5.00	9.09	12.50	5.26	5.00	13.33	8.70	3.85	9.25	9.09	-0.16	0.640916	0.838031
K	intron_retention	GMIP	chr19	-	chr19:19741146-19741279				chr19:19741145-19741146;chr19:19741279-19741280		4.12	13.51	8.54	3.57	7.27	0.00	1.06	1.27	0.00	1.14	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	3.33	4.21	4.55	10.53	10.17	9.38	7.41	2.59	2.47	4.17	3.77	4.00	4.23	5.33	4.35	5.48	5.41	4.00	3.84	3.35	-0.48	0.798609	1.000000
N	alternative_acceptor	PHRF1	chr11	+	chr11:610348-610596;chr11:610348-610500	chr11:610348-610666		chr11:610501-610596;chr11:610597-610666	chr11:610596-610597;chr11:610666-610667		0.00	2.86	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	6.67	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	8.70	5.88	3.33	0.00	10.71	6.25	1.43	0.00	-1.43	0.924807	0.978996
K	intron_retention	TMEM180	chr10	+	chr10:104230875-104231029				chr10:104230874-104230875;chr10:104231029-104231030		16.67	0.00	NA	NA	NA	NA	NA	5.26	0.00	NA	NA	NA	0.00	0.00	NA	NA	0.00	NA	15.38	41.67	NA	NA	16.67	NA	0.00	14.29	17.65	NA	0.00	NA	NA	33.33	NA	NA	23.08	NA	0.00	14.29	14.29	0.794852	1.000000
N	jcn_only_AD	ZBTB8OS	chr1	-	chr1:33100394-33116033;chr1:33100394-33116385;chr1:33100394-33116025;chr1:33100394-33102842;chr1:33100394-33116029	chr1:33100394-33116002		chr1:33102843-33116002;chr1:33116003-33116025;chr1:33116026-33116029;chr1:33116030-33116033;chr1:33116034-33116385	chr1:33116002-33116003;chr1:33116025-33116026;chr1:33116029-33116030;chr1:33116033-33116034;chr1:33116385-33116386		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	4.62	0.00	4.26	0.00	1.92	0.00	4.05	2.56	0.00	0.00	3.45	9.09	3.57	0.00	0.00	3.70	10.00	0.00	0.00	0.00	6.90	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.467556	0.719506
K	intron_retention	MRPL52	chr14	+	chr14:23299158-23299258				chr14:23299157-23299158;chr14:23299258-23299259		40.91	33.33	33.33	71.43	56.25	50.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	60.00	20.00	NA	26.47	52.63	33.33	76.92	44.44	NA	16.67	36.84	40.00	58.33	50.00	33.33	33.33	40.00	37.50	45.45	58.82	NA	29.90	38.88	8.98	0.436918	1.000000
K	intron_retention	MAF1	chr8	+	chr8:145161145-145161245				chr8:145161144-145161145;chr8:145161245-145161246		6.58	2.73	8.99	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	2.50	6.67	4.08	0.00	3.57	3.33	5.13	7.69	3.53	0.00	1.54	0.00	16.90	11.88	9.52	3.03	6.15	2.78	2.62	6.62	4.01	0.641449	1.000000
K	alternative_acceptor	PTGES2	chr9	-	chr9:130884759-130885212	chr9:130884926-130885212		chr9:130884759-130884925	chr9:130884758-130884759		0.00	3.70	5.00	7.14	6.25	10.00	0.00	NA	0.00	0.00	0.00	0.00	2.22	0.00	4.00	5.88	3.39	0.00	3.17	0.00	6.45	NA	7.02	NA	12.50	NA	5.00	8.33	7.14	7.14	0.00	6.25	4.11	6.25	8.33	NA	3.44	0.00	-3.44	0.057966	0.570243
N	alternative_acceptor	EIF4A1,RP11-186B7.4,SENP3-EIF4A1	chr17	+	chr17:7478577-7479841;chr17:7478577-7479628	chr17:7478577-7479847		chr17:7479629-7479841;chr17:7479842-7479847	chr17:7479841-7479842;chr17:7479847-7479848		13.79	16.76	13.31	8.85	7.36	11.00	15.55	16.07	11.69	12.24	12.68	14.40	14.93	16.11	15.72	11.09	15.08	12.10	9.68	11.53	12.55	6.23	8.03	8.41	4.94	15.34	13.71	6.86	8.64	9.45	10.38	12.24	12.02	7.56	7.55	6.83	13.47	14.56	1.09	0.473585	0.775711
N	jcn_only_AA	RNF40,STX4	chr16	+	chr16:30783295-30783393;chr16:30783295-30783409	chr16:30783295-30783389		chr16:30783390-30783393;chr16:30783394-30783409	chr16:30783393-30783394;chr16:30783409-30783410		0.00	0.00	0.00	NA	4.00	NA	0.00	0.00	0.00	5.88	0.00	0.00	0.00	2.44	1.85	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.14	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.177298	0.663989
K	jcn_only_AD	UFD1L	chr22	-	chr22:19463126-19466285;chr22:19463126-19466605	chr22:19463126-19466347		chr22:19466286-19466347;chr22:19466348-19466605	chr22:19466347-19466348;chr22:19466605-19466606		2.38	0.00	5.26	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.13	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	NA	3.39	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.96	0.96	0.087743	0.632469
N	jcn_only_AD	PARVG	chr22	+	chr22:44581753-44583655;chr22:44582522-44583655	chr22:44582597-44583655		chr22:44581753-44582521;chr22:44582522-44582596	chr22:44581752-44581753;chr22:44582521-44582522		0.00	0.00	0.00	NA	0.00	NA	2.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.217911	0.657607
K	intron_retention		chr17	-	chr17:7760517-7760700				chr17:7760516-7760517;chr17:7760700-7760701		16.67	4.55	33.33	12.50	15.15	11.43	12.20	0.00	10.53	14.81	6.82	9.38	8.06	5.88	16.67	14.29	12.20	9.09	19.05	9.52	17.74	20.00	22.58	NA	28.26	NA	23.53	NA	12.50	26.67	20.00	30.00	12.90	15.38	10.00	5.88	12.55	9.52	-3.03	0.985771	1.000000
K	intron_retention	DVL3	chr3	+	chr3:183885500-183885685				chr3:183885499-183885500;chr3:183885685-183885686		2.27	NA	2.63	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	5.56	4.55	3.70	0.00	5.17	1.89	0.00	0.00	0.00	5.77	3.39	NA	5.56	0.00	2.99	0.00	2.22	2.22	0.200368	1.000000
N	jcn_only_AA	TNK2	chr3	-	chr3:195594152-195594231;chr3:195594130-195594231	chr3:195594136-195594231		chr3:195594130-195594135;chr3:195594136-195594151	chr3:195594129-195594130;chr3:195594135-195594136		94.74	97.26	83.33	NA	90.48	NA	87.50	92.11	96.15	NA	100.00	NA	93.33	90.14	95.24	NA	85.00	NA	86.67	93.88	90.48	NA	87.50	NA	92.50	97.85	100.00	NA	89.47	NA	93.48	85.71	84.62	NA	92.86	77.78	90.00	93.68	3.68	0.169073	0.663989
K	cassette	SLC25A39	chr17	-	chr17:42399897-42400651;chr17:42399921-42400651	chr17:42399897-42400175,chr17:42399921-42400175;chr17:42400221-42400651		chr17:42400176-42400220			79.17	91.43	89.39	80.00	95.00	NA	97.12	90.48	96.67	98.48	96.33	98.00	96.23	100.00	100.00	100.00	98.29	89.74	100.00	100.00	100.00	86.21	88.24	100.00	100.00	90.91	92.00	95.83	94.92	100.00	81.82	87.10	95.45	86.27	93.22	92.45	96.68	90.69	-5.98	0.146504	0.709176
K	cassette	MRPS11	chr15	+	chr15:89011256-89018340	chr15:89011256-89015857;chr15:89015957-89018340		chr15:89015858-89015956			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	95.12	100.00	100.00	91.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.67	100.00	100.00	100.00	100.00	100.00	95.74	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677171-197677806;chr3:197677093-197677806	chr3:197677631-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		2.38	1.71	1.07	1.71	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	5.88	4.03	3.39	2.06	1.79	0.00	1.96	1.52	0.93	0.00	0.00	7.69	4.96	1.12	2.44	0.00	0.00	0.56	2.17	1.61	0.177563	0.657607
K	jcn_only_AA	CNOT3	chr19	+	chr19:54657578-54657680;chr19:54657578-54658995	chr19:54657578-54659046		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		81.82	87.76	88.64	93.18	90.70	91.67	100.00	78.57	100.00	100.00	100.00	100.00	100.00	87.50	93.75	100.00	95.00	93.75	90.77	77.78	92.86	100.00	91.67	94.74	90.70	90.00	96.67	86.96	90.32	94.00	89.19	87.23	94.12	88.24	85.00	88.24	92.44	84.66	-7.78	0.009695	0.482846
K	jcn_only_AD	SND1	chr7	+	chr7:127729745-127731888	chr7:127729878-127731888		chr7:127729745-127729877	chr7:127729744-127729745		0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	1.10	1.50	0.90	2.05	0.00	0.00	0.00	0.458250	0.712187
K	intron_retention	NUMA1	chr11	-	chr11:71718482-71719733				chr11:71718481-71718482;chr11:71719733-71719734		14.81	13.33	13.10	16.67	11.43	NA	8.06	2.04	4.11	1.54	3.75	0.00	5.88	2.56	9.59	2.08	2.20	1.43	16.67	18.75	15.00	7.50	24.62	5.71	0.00	14.04	11.11	20.00	17.54	14.89	12.90	12.16	25.00	9.62	17.31	9.52	10.70	13.47	2.77	0.619069	1.000000
N	jcn_only_AD	C11orf73	chr11	+	chr11:86055563-86055644;chr11:86048573-86055644	chr11:86048535-86055644		chr11:86048535-86048572;chr11:86048573-86055562	chr11:86048534-86048535;chr11:86048572-86048573		0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AD	TCP11L1	chr11	+	chr11:33090288-33094019	chr11:33090406-33094019		chr11:33090288-33090405	chr11:33090287-33090288		NA	100.00	93.33	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	94.74	100.00	100.00	100.00	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	0.00	0.391002	0.657607
K	intron_retention	TMEM120A	chr7	-	chr7:75616604-75616677				chr7:75616603-75616604;chr7:75616677-75616678		2.33	6.49	0.00	2.38	2.86	2.00	0.00	0.00	0.97	0.00	0.00	0.00	0.00	0.00	3.21	0.00	0.00	0.00	1.89	2.56	0.00	0.00	3.70	6.67	4.82	2.33	1.37	0.00	0.00	3.57	6.12	4.55	2.70	0.00	0.00	3.23	2.29	2.33	0.04	0.811864	1.000000
N	alternative_donor	CFLAR	chr2	+	chr2:202019131-202025154;chr2:202014559-202025154	chr2:202022786-202025154		chr2:202014559-202019130;chr2:202019131-202022785	chr2:202014558-202014559;chr2:202019130-202019131		1.85	7.14	1.21	0.00	0.00	1.85	0.00	0.40	0.30	0.00	0.00	0.18	0.00	0.47	0.44	0.75	0.00	0.19	0.00	1.08	2.44	1.11	0.00	0.64	NA	1.16	1.33	1.41	0.00	0.48	1.47	1.37	0.00	2.92	1.32	1.01	0.00	1.12	1.12	0.816958	0.942369
K	intron_retention	MRPL43	chr10	-	chr10:102746330-102746505				chr10:102746329-102746330;chr10:102746505-102746506		100.00	100.00	100.00	100.00	100.00	100.00	89.58	100.00	89.66	100.00	93.62	100.00	96.00	100.00	93.10	94.12	97.30	100.00	100.00	85.71	92.11	100.00	96.67	90.91	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.44	100.00	93.94	95.00	98.00	100.00	2.00	0.982862	1.000000
K	intron_retention	GUSB	chr7	-	chr7:65440059-65441001				chr7:65440058-65440059;chr7:65441001-65441002		6.25	0.00	20.00	0.00	6.06	NA	0.61	0.00	0.00	1.12	0.75	0.00	2.86	0.00	0.00	1.82	1.89	0.00	NA	0.00	0.00	4.35	10.64	0.00	0.00	5.00	0.00	0.00	3.70	0.00	0.00	0.00	0.00	6.45	2.78	1.85	0.00	0.00	0.00	0.989805	1.000000
K	cassette	EMC4	chr15	+	chr15:34520048-34521953	chr15:34520048-34520629;chr15:34520791-34521953		chr15:34520630-34520790			81.67	85.94	83.95	90.00	89.66	91.30	86.57	87.18	92.31	91.67	88.68	94.12	89.06	75.68	86.96	89.83	93.75	87.88	86.96	86.79	81.08	90.91	87.01	84.21	90.91	85.71	89.33	88.89	90.62	88.89	84.62	87.01	92.68	90.00	92.31	82.43	88.01	85.16	-2.84	0.040058	0.500342
K	cassette	TBC1D9B	chr5	-	chr5:179292889-179294777	chr5:179292889-179294444;chr5:179294496-179294777		chr5:179294445-179294495			0.00	0.00	0.00	NA	0.00	NA	5.29	3.03	0.00	2.94	2.15	5.66	5.88	5.17	3.23	3.45	4.02	5.13	0.00	0.00	0.00	4.76	0.00	0.00	0.00	3.23	2.27	3.12	2.60	0.00	0.00	0.00	0.00	0.00	2.67	2.22	0.00	1.51	1.51	0.977363	0.995133
N	alternative_acceptor	RIN3	chr14	+	chr14:93151496-93154270;chr14:93151496-93154030	chr14:93151496-93152957		chr14:93152958-93154030;chr14:93154031-93154270	chr14:93154030-93154031;chr14:93154270-93154271		5.26	4.17	7.89	5.00	6.41	NA	2.00	NA	6.25	10.34	7.37	5.88	3.45	NA	0.00	6.25	7.50	6.67	2.33	10.00	3.03	12.00	10.11	11.76	6.45	0.00	6.78	4.76	8.66	9.09	8.33	2.78	2.70	10.53	15.56	6.67	3.08	6.79	3.72	0.365072	0.709013
N	jcn_only_AA	CENPO	chr2	+	chr2:220073772-220074087	chr2:220073772-220073983		chr2:220073984-220074087	chr2:220074087-220074088		100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	100.00	100.00	100.00	NA	95.00	92.86	100.00	100.00	100.00	NA	100.00	100.00	98.28	100.00	97.50	NA	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	97.35	100.00	97.14	100.00	100.00	100.00	0.00	0.697699	0.866530
N	jcn_only_AD	CTSL	chr9	+	chr9:90342311-90342508;chr9:90341224-90342508;chr9:90341165-90342508;chr9:90342384-90342508;chr9:90341169-90342508	chr9:90341314-90342508		chr9:90341165-90341168;chr9:90341169-90341223;chr9:90341224-90341313;chr9:90341314-90342310;chr9:90342311-90342383	chr9:90341164-90341165;chr9:90341168-90341169;chr9:90341223-90341224;chr9:90341313-90341314;chr9:90342310-90342311		22.84	27.06	24.08	39.08	35.27	32.35	26.15	29.22	33.84	28.99	25.20	21.97	26.74	31.68	32.77	30.26	23.02	21.00	31.67	27.04	32.49	33.79	32.32	31.59	32.26	26.21	27.43	34.57	37.46	35.12	25.22	22.37	27.78	29.48	30.85	29.03	27.42	26.62	-0.80	0.367196	0.657607
K	alternative_acceptor	EI24,TKFC	chr11	+	chr11:61113419-61120331;chr11:61113419-61113822	chr11:61113419-61113766		chr11:61113767-61113822;chr11:61113823-61120331	chr11:61113822-61113823;chr11:61120331-61120332		3.39	1.55	8.24	7.77	12.71	14.61	5.26	8.70	4.92	8.82	8.93	4.55	8.51	16.18	15.52	5.00	13.51	7.14	6.98	8.06	8.00	10.14	3.85	10.34	2.08	25.00	5.26	16.36	6.25	4.17	3.74	9.52	4.44	3.74	3.65	6.14	4.85	8.38	3.53	0.141870	0.642991
K	intron_retention	RP11-316M1.12	chr1	+	chr1:150938241-150938606				chr1:150938240-150938241;chr1:150938606-150938607		91.30	95.60	93.19	100.00	91.72	100.00	91.67	92.11	93.09	90.00	91.05	92.00	94.09	95.89	90.10	90.78	90.56	92.59	94.67	91.78	93.60	94.44	93.16	92.31	86.05	91.78	93.60	94.07	91.36	96.04	94.64	93.80	92.38	94.12	96.65	94.01	93.23	91.94	-1.29	0.751861	1.000000
K	intron_retention	RAF1	chr3	-	chr3:12626753-12627179				chr3:12626752-12626753;chr3:12627179-12627180		14.29	20.00	12.09	NA	20.00	NA	0.00	0.00	1.49	0.00	0.00	0.00	0.00	2.63	2.78	3.28	0.00	0.00	NA	15.69	22.22	11.76	8.62	8.11	NA	11.63	9.68	3.57	11.43	15.79	13.89	13.24	25.00	16.07	10.61	10.00	10.00	12.76	2.76	0.730136	1.000000
N	jcn_only_AD	CNPY2,RP11-977G19.10	chr12	-	chr12:56709027-56709604;chr12:56709027-56709661	chr12:56709027-56709690		chr12:56709605-56709661;chr12:56709662-56709690	chr12:56709661-56709662;chr12:56709690-56709691		4.65	8.74	5.36	0.00	0.00	8.00	1.54	0.00	4.17	5.26	4.17	2.63	3.12	0.00	1.47	3.57	2.13	0.00	6.12	0.00	5.80	0.00	6.25	8.00	0.00	0.00	7.27	0.00	4.17	0.00	9.76	0.00	5.17	0.00	12.50	7.69	4.14	0.00	-4.14	0.436345	0.696909
K	intron_retention	RNASEH2C	chr11	-	chr11:65487281-65487515				chr11:65487280-65487281;chr11:65487515-65487516		4.76	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.480698	1.000000
K	intron_retention		chr1	+	chr1:2492154-2493215				chr1:2492153-2492154;chr1:2493215-2493216		76.67	80.70	80.56	73.68	74.55	72.73	76.00	87.50	68.18	72.73	78.12	83.33	90.91	77.78	78.57	67.50	80.95	NA	86.67	81.48	81.25	80.00	81.69	81.58	73.81	88.89	82.14	75.00	72.60	72.09	80.00	80.00	75.00	77.42	89.13	80.00	78.35	80.74	2.39	0.755053	1.000000
K	cassette	COX7A2	chr6	-	chr6:75947705-75950891	chr6:75947705-75949992;chr6:75950102-75950891		chr6:75949993-75950101			95.24	100.00	90.32	90.62	93.10	91.88	98.94	98.55	97.33	96.39	96.84	95.70	98.17	95.83	94.05	96.13	96.00	93.10	95.58	98.65	97.45	90.67	95.24	88.89	100.00	98.61	95.35	96.67	96.63	92.31	97.94	97.22	98.32	93.62	95.28	97.56	98.63	98.25	-0.38	0.285838	0.709176
K	intron_retention	EIF3G	chr19	-	chr19:10226262-10226359				chr19:10226261-10226262;chr19:10226359-10226360		4.55	0.71	1.04	2.12	0.33	0.48	4.88	0.00	1.30	0.00	6.31	0.00	3.70	1.89	0.00	0.00	3.08	0.00	0.61	2.74	0.00	0.00	4.72	0.00	1.00	2.99	1.65	1.02	3.68	1.61	1.37	2.26	1.34	0.00	2.73	0.96	1.17	2.31	1.15	0.978457	1.000000
N	alternative_donor		chr2	-	chr2:101889558-101898320	chr2:101889558-101890492		chr2:101890493-101898320	chr2:101898320-101898321		94.51	100.00	95.00	100.00	100.00	100.00	100.00	94.59	100.00	100.00	100.00	89.74	100.00	92.11	84.21	NA	NA	86.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.08	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	89.47	94.44	100.00	94.84	-5.16	0.030219	0.337600
N	alternative_donor	KIAA0930,PES1	chr22	-	chr22:45593098-45593670	chr22:45593098-45593418		chr22:45593419-45593670	chr22:45593670-45593671		2.17	2.26	2.67	1.37	1.15	0.00	0.59	0.00	0.00	0.91	0.71	0.00	0.83	0.78	2.00	1.79	0.85	0.00	1.60	2.30	1.09	1.73	1.35	1.75	6.00	3.51	1.56	1.20	1.24	0.00	3.51	3.67	1.90	2.28	2.17	1.37	1.75	2.23	0.48	0.881809	0.971352
K	intron_retention	UNC93B1	chr11	-	chr11:67766776-67766988				chr11:67766775-67766776;chr11:67766988-67766989		3.33	0.00	4.27	0.00	2.33	9.09	0.00	1.76	0.78	1.03	0.00	0.80	1.91	1.22	2.11	3.60	0.00	1.24	3.45	2.73	0.00	5.56	3.23	4.27	23.08	3.61	3.19	6.41	1.30	7.08	3.11	1.78	0.00	3.19	2.74	3.80	0.95	2.92	1.96	0.880710	1.000000
K	alternative_acceptor	ODF3B	chr22	-	chr22:50969258-50969365	chr22:50969282-50969365		chr22:50969258-50969281	chr22:50969257-50969258		94.29	100.00	93.48	100.00	100.00	100.00	100.00	95.56	100.00	NA	NA	NA	100.00	100.00	93.75	83.33	100.00	NA	96.97	94.00	91.89	NA	100.00	NA	100.00	93.33	93.59	100.00	100.00	100.00	94.83	95.16	100.00	100.00	92.31	100.00	100.00	94.56	-5.44	0.006234	0.405868
K	alternative_acceptor	CNST,MIA3	chr1	+	chr1:222837491-222838650	chr1:222837491-222838224		chr1:222838225-222838650	chr1:222838650-222838651		0.00	2.94	1.59	NA	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	3.12	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	1.83	0.00	0.00	0.00	0.474685	0.776506
K	intron_retention		chr17	+	chr17:36863794-36864015				chr17:36863793-36863794;chr17:36864015-36864016		4.00	23.81	4.17	NA	NA	NA	0.00	0.00	1.92	0.00	0.00	0.00	0.00	2.78	6.06	3.33	0.00	0.00	NA	4.55	NA	6.67	0.00	6.06	0.00	4.35	2.44	0.00	NA	15.38	NA	3.57	NA	10.71	5.26	6.67	0.00	4.00	4.00	0.985984	1.000000
K	cassette	ING4	chr12	-	chr12:6762217-6765892	chr12:6762217-6762395;chr12:6762563-6765892		chr12:6762396-6762562			88.89	81.48	100.00	NA	100.00	NA	100.00	96.00	100.00	NA	100.00	NA	100.00	100.00	97.14	NA	91.67	NA	NA	87.50	91.67	NA	83.33	NA	100.00	100.00	100.00	NA	94.12	NA	100.00	95.45	NA	100.00	100.00	NA	100.00	98.00	-2.00	0.995883	0.998784
N	alternative_donor	NCBP2	chr3	-	chr3:196663954-196664380	chr3:196663954-196664042		chr3:196664043-196664380	chr3:196664380-196664381		5.00	4.26	7.32	3.03	4.88	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	4.00	6.25	5.66	5.00	8.00	8.11	3.45	7.14	2.17	2.38	1.92	2.50	11.11	9.76	8.16	5.00	9.26	10.87	3.73	5.62	1.90	0.476837	0.735917
N	jcn_only_AA	DOCK10	chr2	-	chr2:225633665-225634927;chr2:225630883-225634927	chr2:225630555-225634927		chr2:225630555-225630882;chr2:225630883-225633664	chr2:225630554-225630555;chr2:225630882-225630883		100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.10	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	95.00	100.00	100.00	100.00	98.21	100.00	98.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.12	100.00	100.00	97.78	-2.22	0.054182	0.663989
N	cassette	CRYL1	chr13	-	chr13:21006436-21063508	chr13:21006436-21013731;chr13:21013894-21063508		chr13:21013732-21013893			82.14	87.72	84.16	100.00	85.42	NA	89.13	82.35	100.00	89.06	88.57	90.91	89.32	88.89	80.00	90.48	94.23	83.64	84.85	79.07	91.30	89.09	87.25	85.94	100.00	87.10	83.64	86.21	92.16	78.38	74.07	77.19	76.92	87.91	87.63	83.48	88.42	82.25	-6.18	0.162362	0.709176
K	alternative_acceptor	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99955990-99956521;chr7:99955990-99956555	chr7:99955990-99956312		chr7:99956313-99956521;chr7:99956522-99956555	chr7:99956521-99956522;chr7:99956555-99956556		96.67	100.00	93.62	100.00	95.65	NA	92.86	89.47	90.48	NA	NA	NA	100.00	96.88	94.87	93.10	NA	NA	94.12	89.13	78.38	93.33	93.55	100.00	100.00	98.48	95.31	92.00	91.67	86.05	90.00	75.61	76.92	76.47	83.33	85.71	97.06	93.34	-3.72	0.896920	0.963205
N	intron_retention		chr16	+	chr16:31050973-31051046				chr16:31050972-31050973;chr16:31051046-31051047		100.00	100.00	100.00	96.88	94.52	98.21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	94.59	100.00	96.30	100.00	100.00	95.24	100.00	100.00	100.00	100.00	100.00	100.00	96.88	100.00	100.00	97.73	100.00	100.00	100.00	100.00	0.00	0.927966	1.000000
N	cassette	KLC1	chr14	+	chr14:104145883-104158695;chr14:104145856-104159889;chr14:104151374-104159889;chr14:104145883-104159889;chr14:104145883-104166991;chr14:104145856-104166991;chr14:104151374-104166991	chr14:104145856-104153417,chr14:104151374-104153417,chr14:104145883-104153417;chr14:104153549-104159889,chr14:104153549-104166991,chr14:104153549-104158695		chr14:104153418-104153548			74.51	73.68	67.19	62.26	65.71	50.82	56.76	76.74	44.64	69.57	59.18	61.29	49.25	68.75	51.67	53.75	45.45	58.62	63.64	79.55	48.96	68.97	67.24	72.97	51.02	66.15	58.62	63.41	60.81	68.00	74.07	65.62	64.29	86.00	80.43	71.01	60.20	74.29	14.09	0.014104	0.369835
N	jcn_only_AA	ARNTL,SMPD1	chr11	+	chr11:6415272-6415448;chr11:6415272-6415427	chr11:6415272-6415407		chr11:6415408-6415427;chr11:6415428-6415448	chr11:6415427-6415428;chr11:6415448-6415449		5.00	0.00	0.00	0.00	0.00	NA	5.97	4.17	11.43	7.55	11.25	0.00	0.00	0.00	9.09	9.09	1.67	4.55	0.00	0.00	1.79	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	2.13	0.00	0.00	0.00	0.709507	0.871915
N	jcn_only_AA	MGAT4B	chr5	-	chr5:179228720-179228783;chr5:179228678-179228783;chr5:179228695-179228783	chr5:179228693-179228783		chr5:179228678-179228692;chr5:179228693-179228694;chr5:179228695-179228719	chr5:179228677-179228678;chr5:179228692-179228693;chr5:179228694-179228695		0.00	0.00	8.33	NA	4.76	NA	2.11	3.70	0.00	5.00	2.33	0.00	3.30	7.69	0.00	0.00	0.00	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	0.00	6.90	0.00	3.92	0.00	3.57	0.00	NA	4.08	1.92	8.57	0.00	3.63	3.63	0.145688	0.663989
K	intron_retention	MYO1F	chr19	-	chr19:8616759-8616916				chr19:8616758-8616759;chr19:8616916-8616917		7.89	9.57	11.74	NA	10.00	NA	0.62	2.31	3.95	0.00	1.79	0.00	1.58	5.45	5.97	0.00	0.58	0.00	27.78	8.24	10.71	4.17	7.92	4.88	33.90	5.94	9.22	9.52	9.23	NA	13.04	12.03	20.83	2.27	9.00	2.94	15.20	6.92	-8.29	0.395460	1.000000
K	intron_retention	BAX	chr19	+	chr19:49464172-49464788				chr19:49464171-49464172;chr19:49464788-49464789		22.56	21.25	25.14	27.81	31.61	30.06	15.13	21.88	20.80	24.24	23.53	19.05	19.10	23.26	34.88	24.00	33.91	28.21	16.15	16.23	19.53	26.96	31.34	22.03	17.95	25.00	21.79	28.95	24.44	20.91	23.58	23.33	20.85	28.15	30.77	25.52	18.52	22.91	4.39	0.398174	1.000000
N	cassette	STAB1	chr3	+	chr3:52555022-52555611;chr3:52554715-52555611	chr3:52555022-52555376,chr3:52554715-52555376;chr3:52555527-52555611		chr3:52555377-52555526			98.28	98.36	98.06	97.63	96.51	95.00	97.02	98.20	96.90	97.42	97.20	98.11	95.95	95.83	94.94	94.67	96.02	95.39	99.30	97.81	100.00	97.10	96.88	98.21	97.88	97.93	98.76	96.78	97.24	97.70	98.44	97.62	98.21	97.50	96.09	97.17	98.04	98.06	0.02	0.951786	0.987421
N	cassette	DPM1	chr20	-	chr20:49558664-49562383	chr20:49558664-49562273;chr20:49562300-49562383		chr20:49562274-49562299			100.00	92.31	100.00	100.00	100.00	100.00	100.00	95.24	100.00	96.84	97.22	100.00	98.11	100.00	100.00	100.00	98.23	98.28	100.00	96.67	100.00	100.00	96.00	93.33	NA	94.12	100.00	100.00	98.04	95.56	100.00	96.00	100.00	96.72	100.00	92.86	100.00	98.34	-1.66	0.829150	0.942757
N	alternative_donor	USP19	chr3	-	chr3:49145962-49147616	chr3:49145962-49147171		chr3:49147172-49147616	chr3:49147616-49147617		12.50	6.58	11.11	5.88	4.35	3.70	5.26	6.67	0.00	6.67	4.55	NA	4.17	0.00	6.25	6.67	3.03	7.69	1.54	7.14	2.50	16.67	7.69	30.00	0.00	9.52	8.82	15.38	8.33	6.25	5.88	10.00	2.94	13.64	13.64	22.22	3.55	6.90	3.35	0.110112	0.520337
N	cassette	ZSWIM8	chr10	+	chr10:75559249-75560053	chr10:75559249-75559768;chr10:75559929-75560053		chr10:75559769-75559928			100.00	100.00	98.63	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.30	98.72	94.44	100.00	100.00	100.00	100.00	100.00	0.00	0.370974	0.709176
K	intron_retention	RFWD2	chr1	-	chr1:175957549-175958497				chr1:175957548-175957549;chr1:175958497-175958498		4.44	5.88	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.94	0.00	2.27	2.50	1.59	0.00	0.00	0.00	3.39	0.00	0.00	0.00	4.00	4.26	2.08	1.52	3.17	2.27	1.04	0.00	-1.04	0.648614	1.000000
N	jcn_only_AD	APOBEC3G	chr22	+	chr22:39482461-39483015	chr22:39482573-39483015		chr22:39482461-39482572	chr22:39482460-39482461		97.74	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	97.83	100.00	100.00	100.00	100.00	100.00	96.92	100.00	NA	100.00	100.00	100.00	100.00	97.78	100.00	100.00	96.67	96.95	96.77	92.31	100.00	100.00	95.74	100.00	97.78	-2.22	0.743736	0.866332
N	jcn_only_AD	STAT3	chr17	-	chr17:40469243-40471873;chr17:40469243-40474302	chr17:40469243-40474299		chr17:40471874-40474299;chr17:40474300-40474302	chr17:40474299-40474300;chr17:40474302-40474303		78.53	87.88	81.27	79.37	79.41	81.00	83.12	79.91	80.18	78.04	85.00	80.71	81.43	84.65	79.80	80.00	82.50	79.94	82.76	79.19	85.71	79.31	80.33	83.60	80.00	77.85	81.32	87.80	83.64	84.23	82.58	81.91	88.24	79.70	81.69	80.98	82.94	79.55	-3.39	0.079279	0.627804
K	intron_retention	SHKBP1	chr19	+	chr19:41096329-41096638				chr19:41096328-41096329;chr19:41096638-41096639		36.36	25.00	44.00	NA	53.85	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	40.62	40.00	38.24	NA	61.11	NA	47.37	44.44	37.50	NA	56.25	40.00	45.83	41.67	50.00	NA	28.57	NA	43.99	42.22	-1.77	0.986312	1.000000
K	intron_retention	ACADVL	chr17	+	chr17:7127563-7127639				chr17:7127562-7127563;chr17:7127639-7127640		4.50	1.98	4.00	2.63	5.67	1.77	0.00	0.00	0.00	0.00	0.35	0.00	0.45	2.02	2.27	0.45	0.93	0.00	2.21	4.61	1.77	3.15	8.31	2.68	2.27	2.63	7.69	2.70	3.67	1.83	5.48	4.72	2.33	4.79	4.63	2.06	2.09	3.56	1.47	0.199465	1.000000
N	alternative_acceptor	MAPK13	chr6	+	chr6:36098479-36099047	chr6:36098479-36098696		chr6:36098697-36099047	chr6:36099047-36099048		12.50	15.38	17.07	4.76	8.82	NA	0.88	2.00	2.56	0.72	1.79	0.00	2.97	2.33	0.00	1.42	1.80	1.06	NA	11.11	12.50	11.11	11.67	5.80	NA	12.50	17.95	7.02	16.67	8.11	11.11	8.33	9.09	9.33	11.27	7.77	6.03	11.11	5.08	0.710386	0.890280
K	cassette	PLA2G15	chr16	+	chr16:68283350-68288821	chr16:68283350-68287324;chr16:68287421-68288821		chr16:68287325-68287420			0.00	0.00	0.00	NA	0.00	NA	7.09	3.03	5.00	5.00	3.23	NA	5.48	4.55	0.00	4.17	5.00	NA	NA	7.14	NA	NA	2.90	NA	NA	0.00	0.00	NA	2.04	NA	NA	NA	0.00	0.00	0.00	0.00	2.74	3.03	0.29	0.934001	0.983467
K	cassette	PIAS1	chr15	+	chr15:68473693-68479879	chr15:68473693-68475967;chr15:68476006-68479879		chr15:68475968-68476005			100.00	93.75	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.00	94.44	NA	100.00	100.00	95.83	100.00	100.00	0.00	0.700171	0.890246
N	jcn_only_AA	FAM195B	chr17	-	chr17:79782267-79782374;chr17:79782292-79782374	chr17:79782282-79782374		chr17:79782267-79782281;chr17:79782282-79782291	chr17:79782266-79782267;chr17:79782281-79782282		100.00	100.00	93.75	95.29	96.49	100.00	100.00	100.00	93.48	97.41	100.00	97.37	100.00	100.00	96.61	96.97	97.53	98.25	96.55	88.89	100.00	96.84	97.45	94.90	93.85	100.00	100.00	94.69	97.41	96.17	97.62	100.00	95.60	93.42	92.31	94.66	98.28	100.00	1.72	0.969012	0.989156
K	intron_retention	LILRB5	chr19	-	chr19:54754797-54755916				chr19:54754796-54754797;chr19:54755916-54755917		53.85	22.22	NA	27.27	32.08	27.91	3.08	7.41	NA	3.28	6.19	1.72	3.54	5.41	NA	3.51	4.26	3.53	9.72	40.00	18.75	18.42	13.27	18.60	2.26	6.29	24.32	8.82	4.13	9.15	3.81	17.86	2.63	0.00	3.80	6.49	3.31	6.85	3.54	0.895916	1.000000
N	alternative_acceptor	EIF4A2,GNAI2	chr3	+	chr3:186506210-186506913	chr3:186506210-186506885		chr3:186506886-186506913	chr3:186506913-186506914		65.31	68.18	68.57	50.00	48.78	30.77	44.44	23.08	27.27	20.00	38.10	NA	35.00	26.67	50.00	29.73	43.48	25.00	50.00	53.06	56.25	54.02	49.40	51.14	46.15	51.02	57.63	60.98	62.50	58.33	42.50	48.94	66.67	46.79	51.81	49.06	48.08	46.76	-1.31	0.364109	0.709013
N	jcn_only_AA	UNC13D	chr17	-	chr17:73827430-73829046;chr17:73827343-73829046	chr17:73827499-73829046		chr17:73827343-73827429;chr17:73827430-73827498	chr17:73827342-73827343;chr17:73827429-73827430		13.79	0.00	6.67	0.00	3.70	NA	0.00	0.00	0.00	0.00	0.00	9.09	0.00	2.15	0.00	0.00	0.00	0.00	3.57	6.93	0.00	11.11	0.00	0.00	0.00	4.35	4.00	0.00	0.00	0.00	5.77	7.59	0.00	3.23	6.06	5.71	0.00	5.06	5.06	0.053133	0.663989
K	coord_cassette	HDAC5	chr17	-	chr17:42161223-42163939	chr17:42161223-42161922;chr17:42162044-42162389;chr17:42162524-42163939		chr17:42161923-42162043;chr17:42162390-42162523			98.18	100.00	100.00	NA	96.97	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	90.00	NA	100.00	NA	96.43	95.45	95.45	NA	100.00	NA	100.00	100.00	96.97	NA	100.00	NA	96.15	97.44	100.00	94.44	100.00	100.00	100.00	99.09	-0.91	0.311559	0.643829
N	coord_cassette	LRCH4,RP11-44M6.7	chr7	-	chr7:100174401-100174895	chr7:100174401-100174524;chr7:100174629-100174708;chr7:100174778-100174895		chr7:100174525-100174628;chr7:100174709-100174777			100.00	100.00	100.00	NA	96.30	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.02	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.643829
K	intron_retention		chr16	+	chr16:2578720-2578994				chr16:2578719-2578720;chr16:2578994-2578995		42.11	13.21	50.00	15.38	17.78	11.11	1.89	9.09	0.00	0.00	0.00	0.00	4.88	NA	17.65	3.85	3.51	0.00	10.47	28.57	14.29	25.00	21.43	NA	9.65	30.00	27.27	6.67	7.69	16.67	24.00	43.48	12.00	14.81	20.59	17.65	10.06	28.57	18.51	0.201213	1.000000
K	intron_retention	REEP4	chr8	-	chr8:21996307-21996438				chr8:21996306-21996307;chr8:21996438-21996439		3.03	1.35	0.00	NA	7.02	NA	0.00	0.00	0.00	0.00	2.86	NA	0.00	0.00	0.00	0.00	0.00	NA	1.72	NA	0.00	NA	8.33	NA	6.15	0.00	0.00	NA	0.00	NA	NA	0.00	6.67	0.00	0.00	0.00	1.54	0.00	-1.54	0.846558	1.000000
K	cassette	FDXR	chr17	-	chr17:72860470-72860945	chr17:72860470-72860601;chr17:72860687-72860945		chr17:72860602-72860686			100.00	100.00	89.29	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	90.24	82.35	93.33	NA	NA	NA	91.18	100.00	88.46	NA	NA	NA	90.62	93.10	78.85	100.00	82.35	NA	95.59	95.31	-0.28	0.980947	0.995216
K	coord_cassette	PQLC1	chr18	-	chr18:77679401-77703328	chr18:77679401-77690227;chr18:77690312-77693968;chr18:77694023-77703328		chr18:77690228-77690311;chr18:77693969-77694022			0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	6.90	2.08	2.17	0.00	2.44	0.00	5.88	0.00	3.92	0.00	0.00	0.00	0.00	6.25	0.00	7.14	0.00	0.00	7.69	0.00	4.17	0.00	0.00	5.26	0.00	3.03	3.70	2.17	0.00	0.00	0.00	0.898561	0.968725
K	intron_retention		chr11	+	chr11:71939892-71940133				chr11:71939891-71939892;chr11:71940133-71940134		33.33	43.48	34.88	NA	NA	NA	5.71	5.45	13.04	4.76	6.35	0.00	5.33	4.00	13.51	0.00	5.80	NA	NA	21.74	NA	NA	26.32	NA	27.78	17.65	22.86	NA	18.18	NA	18.18	20.59	NA	28.57	22.22	24.00	16.75	17.91	1.17	0.942133	1.000000
K	cassette	ATG12	chr5	-	chr5:115168362-115177086	chr5:115168362-115173324;chr5:115173462-115177086		chr5:115173325-115173461			91.89	100.00	91.30	95.83	97.06	96.97	100.00	95.35	97.06	100.00	97.92	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	92.50	93.10	96.15	88.89	100.00	93.33	92.50	87.88	95.65	100.00	96.55	90.48	95.92	89.29	96.23	95.24	94.34	96.66	92.50	-4.16	0.448097	0.750082
K	alternative_donor	RPS3	chr11	+	chr11:75112750-75113423	chr11:75112770-75113423		chr11:75112750-75112769	chr11:75112749-75112750		18.18	17.57	23.08	31.71	27.59	33.33	23.81	10.00	18.52	31.91	33.96	36.84	20.00	NA	20.00	26.00	28.00	41.67	19.57	20.00	23.40	25.81	31.25	20.00	16.00	NA	18.52	25.71	26.42	26.47	12.50	26.67	18.75	32.35	27.78	28.85	19.16	15.34	-3.82	0.182170	0.563271
K	intron_retention	SPP1	chr4	+	chr4:88902688-88902753				chr4:88902687-88902688;chr4:88902753-88902754		88.61	92.16	88.28	89.96	91.18	92.11	88.47	88.56	88.49	89.20	89.17	88.40	88.97	88.93	89.98	89.57	90.35	90.73	95.25	91.55	92.45	89.49	91.94	90.32	89.19	87.72	89.13	90.93	91.31	90.84	93.02	91.49	93.46	88.07	89.63	89.78	90.67	88.77	-1.90	0.672892	1.000000
K	intron_retention	DAPK3	chr19	-	chr19:3960103-3961006				chr19:3960102-3960103;chr19:3961006-3961007		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.69	3.39	1.92	0.00	0.00	2.86	0.00	0.00	0.00	0.890063	1.000000
K	alternative_acceptor	AD000671.6,IGFLR1	chr19	-	chr19:36230988-36231280;chr19:36230671-36231280	chr19:36230990-36231280		chr19:36230671-36230987;chr19:36230988-36230989	chr19:36230670-36230671;chr19:36230987-36230988		83.72	92.66	92.86	83.33	94.62	90.70	82.98	83.33	78.95	87.18	86.36	80.49	83.81	78.12	83.33	94.87	87.07	83.02	79.45	75.68	92.31	92.31	79.05	93.94	81.70	71.05	85.58	69.64	71.14	81.48	77.27	80.39	67.91	80.00	84.29	76.32	82.34	77.69	-4.65	0.421917	0.733210
N	jcn_only_AA	SF3B1	chr2	-	chr2:198263306-198264778	chr2:198263763-198264778		chr2:198263306-198263762	chr2:198263305-198263306		1.47	7.69	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	2.20	0.00	1.65	0.00	0.00	0.00	0.00	3.42	2.94	3.00	1.70	3.82	NA	2.59	2.20	1.45	5.08	5.77	0.00	5.26	NA	3.05	1.31	2.09	1.10	0.73	-0.37	0.559690	0.791237
K	alternative_donor	C6orf1	chr6	-	chr6:34215270-34215517	chr6:34215270-34215457		chr6:34215458-34215517	chr6:34215517-34215518		76.92	91.89	76.19	NA	86.21	NA	88.00	89.66	95.00	NA	86.67	NA	81.82	96.15	90.00	86.67	93.33	NA	86.67	86.36	100.00	NA	78.79	NA	90.48	79.31	76.19	75.00	93.33	75.00	76.92	87.50	81.48	NA	81.82	75.00	87.34	82.84	-4.50	0.513442	0.765423
N	alternative_acceptor	NCAPH2,PARVG	chr22	+	chr22:44587985-44588976;chr22:44587985-44589680;chr22:44587985-44589685	chr22:44587985-44588837		chr22:44588838-44588976;chr22:44588977-44589680;chr22:44589681-44589685	chr22:44588976-44588977;chr22:44589680-44589681;chr22:44589685-44589686		0.00	2.04	0.00	0.00	1.10	4.55	0.00	0.00	0.00	0.00	0.00	0.00	1.22	NA	0.00	0.00	0.97	0.00	4.55	0.00	0.00	0.00	3.70	0.00	4.44	5.88	2.38	0.00	1.09	0.00	0.00	0.00	3.66	3.12	2.99	0.00	2.85	0.00	-2.85	0.326513	0.709013
K	intron_retention		chr7	-	chr7:45141214-45141423				chr7:45141213-45141214;chr7:45141423-45141424		5.88	9.26	18.52	2.08	14.75	12.31	0.00	0.00	3.12	4.55	3.12	0.00	2.50	0.00	3.64	4.00	2.86	0.00	6.38	0.00	8.33	14.58	14.04	15.38	18.42	0.00	11.54	5.26	12.00	13.64	8.00	12.50	9.09	9.38	17.86	16.67	7.73	0.00	-7.73	0.299827	1.000000
K	jcn_only_AD	ZNF277	chr7	+	chr7:111980973-111982615	chr7:111981102-111982615		chr7:111980973-111981101	chr7:111980972-111980973		98.46	100.00	100.00	100.00	100.00	100.00	100.00	96.55	97.83	92.86	87.50	92.96	93.33	96.15	92.86	96.88	93.33	97.44	90.91	92.75	96.30	100.00	96.77	97.44	100.00	97.89	100.00	97.14	96.15	97.65	96.59	94.12	100.00	98.77	100.00	99.38	100.00	96.57	-3.43	0.618918	0.812468
K	jcn_only_AD	TP53I3	chr2	-	chr2:24303902-24305870	chr2:24303902-24305754		chr2:24305755-24305870	chr2:24305870-24305871		100.00	100.00	100.00	83.33	97.14	92.31	90.91	96.67	90.91	94.44	93.75	84.62	87.50	90.91	84.62	NA	92.31	NA	88.10	93.75	88.57	NA	100.00	81.82	95.00	100.00	100.00	100.00	90.62	100.00	100.00	92.31	88.64	91.30	96.30	93.10	89.78	98.34	8.56	0.070413	0.603248
K	intron_retention		chr11	+	chr11:2940638-2943331				chr11:2940637-2940638;chr11:2943331-2943332		8.93	10.20	12.82	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	0.00	5.88	NA	3.75	5.13	0.00	NA	2.27	0.00	8.62	1.35	6.52	0.00	3.23	0.00	4.17	6.67	4.35	0.00	0.00	3.03	4.88	2.76	-2.12	0.945857	1.000000
N	cassette	CMAS	chr12	+	chr12:22213861-22218054	chr12:22213861-22215214;chr12:22215369-22218054		chr12:22215215-22215368			91.43	92.31	100.00	NA	100.00	NA	100.00	100.00	96.97	100.00	100.00	NA	100.00	97.06	96.88	100.00	96.15	NA	88.24	100.00	100.00	100.00	92.86	100.00	100.00	100.00	92.86	100.00	100.00	100.00	82.14	89.47	100.00	89.29	93.33	90.48	100.00	98.53	-1.47	0.657990	0.874582
K	jcn_only_AD	ITGB5	chr3	-	chr3:124592379-124620112;chr3:124592379-124597449;chr3:124592379-124606446	chr3:124592379-124605777		chr3:124597450-124605777;chr3:124605778-124606446;chr3:124606447-124620112	chr3:124605777-124605778;chr3:124606446-124606447;chr3:124620112-124620113		100.00	92.96	88.37	NA	95.45	NA	96.71	100.00	100.00	100.00	97.86	98.48	97.91	97.56	NA	98.81	97.13	100.00	NA	100.00	NA	100.00	94.23	100.00	100.00	97.56	97.73	100.00	91.94	100.00	100.00	100.00	NA	100.00	93.44	95.56	97.31	100.00	2.69	0.221581	0.657607
N	alternative_donor	P4HTM	chr3	+	chr3:49040030-49041530	chr3:49040085-49041530		chr3:49040030-49040084	chr3:49040029-49040030		0.00	0.00	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	0.00	0.00	NA	9.52	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.657675
N	alternative_first_exon	GNS,SELPLG	chr12	-	chr12:109018089-109024415,chr12:109018089-109024420;chr12:109018089-109025634;chr12:109018089-109027515	chr12:109018089-109041176	chr12:109025635-109025854;chr12:109027516-109027735	chr12:109041177-109041298			22.50	5.13	10.45	NA	NA	NA	11.19	18.18	0.93	34.15	8.51	23.08	1.25	37.50	1.75	6.45	16.52	27.78	NA	16.00	18.75	54.55	11.11	54.55	2.08	23.08	7.14	NA	22.22	NA	30.77	12.20	NA	50.00	35.29	23.81	3.60	22.79	19.18	0.001171	0.016459
K	intron_retention	APRT	chr16	-	chr16:88878065-88878227				chr16:88878064-88878065;chr16:88878227-88878228		0.00	1.61	0.00	0.00	3.88	0.00	0.87	0.00	0.00	0.48	0.74	0.53	0.00	0.00	1.30	1.56	0.27	0.00	0.95	0.00	1.23	4.26	5.94	2.17	0.00	NA	5.26	3.23	3.49	1.69	NA	3.33	1.80	0.00	1.41	0.00	0.91	0.00	-0.91	0.327818	1.000000
N	alternative_acceptor	PSMA1	chr11	-	chr11:14535440-14535948;chr11:14535432-14535948;chr11:14535434-14535948	chr11:14535452-14535948		chr11:14535432-14535433;chr11:14535434-14535439;chr11:14535440-14535451	chr11:14535431-14535432;chr11:14535433-14535434;chr11:14535439-14535440		4.69	3.33	4.44	7.69	3.92	8.33	0.00	1.08	0.99	0.00	0.76	0.93	1.03	1.09	1.79	0.66	0.68	0.00	0.00	5.17	3.45	5.41	5.10	5.81	NA	6.02	3.16	5.48	2.99	5.56	7.84	8.11	0.00	5.22	5.50	5.43	0.00	4.93	4.93	0.028555	0.546324
K	intron_retention	PGS1	chr17	+	chr17:76415757-76420141				chr17:76415756-76415757;chr17:76420141-76420142		35.42	31.03	40.62	36.00	20.83	44.44	8.33	30.77	17.81	25.00	25.00	45.45	41.67	24.14	36.36	37.50	NA	NA	14.29	37.04	30.51	61.11	31.58	60.47	63.64	45.45	41.75	37.50	28.57	43.18	24.14	32.26	10.00	60.00	50.00	57.53	22.66	33.09	10.43	0.728195	1.000000
N	cassette	STK10	chr5	-	chr5:171517367-171523429	chr5:171517367-171520415;chr5:171520965-171523429		chr5:171520416-171520964			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.59	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
N	alternative_acceptor		chr20	+	chr20:61441918-61442714;chr20:61441918-61442799;chr20:61441918-61442719	chr20:61441918-61442813		chr20:61442715-61442719;chr20:61442720-61442799;chr20:61442800-61442813	chr20:61442719-61442720;chr20:61442799-61442800;chr20:61442813-61442814		98.87	93.48	98.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	100.00	100.00	97.79	97.44	100.00	97.18	99.17	98.25	99.06	96.63	100.00	100.00	98.43	97.75	98.53	93.48	98.72	100.00	98.20	99.12	98.97	-0.16	0.355263	0.709013
K	cassette	ACP5	chr19	-	chr19:11688495-11689658;chr19:11689010-11689658	chr19:11689010-11689399,chr19:11688495-11689399;chr19:11689473-11689658		chr19:11689400-11689472			40.00	22.31	40.00	25.00	26.02	NA	54.89	38.10	42.11	39.84	46.51	43.59	52.08	NA	41.67	41.38	39.45	42.22	25.00	NA	38.30	22.50	32.43	16.92	30.00	33.33	NA	33.33	41.45	32.61	33.33	37.50	21.28	25.00	25.56	25.84	27.50	35.72	8.22	0.775042	0.933202
K	jcn_only_AD	UBL7	chr15	-	chr15:74751238-74753448;chr15:74751238-74753008	chr15:74751238-74753377		chr15:74753009-74753377;chr15:74753378-74753448	chr15:74753377-74753378;chr15:74753448-74753449		75.00	70.00	45.45	NA	69.23	NA	56.76	NA	66.67	63.64	61.11	NA	60.00	NA	73.91	73.33	46.67	NA	NA	50.00	66.67	NA	75.00	NA	NA	71.43	71.43	NA	70.00	NA	61.11	62.50	75.00	81.82	57.89	69.23	65.00	66.27	1.27	0.886363	0.943380
N	jcn_only_AA	SIRT7	chr17	-	chr17:79872407-79872479;chr17:79872333-79872479	chr17:79872381-79872479		chr17:79872333-79872380;chr17:79872381-79872406	chr17:79872332-79872333;chr17:79872380-79872381		5.97	12.00	4.84	7.69	10.53	NA	0.00	0.00	0.00	0.00	0.00	NA	8.70	0.00	0.00	0.00	3.70	NA	12.90	7.50	6.90	9.09	5.56	7.69	11.11	2.56	12.00	0.00	10.71	0.00	8.77	9.47	18.87	7.69	9.76	11.90	11.55	4.26	-7.29	0.059985	0.663989
K	cassette	SDF2	chr17	-	chr17:26976295-26982304	chr17:26976295-26978503;chr17:26978561-26982304		chr17:26978504-26978560			0.93	0.00	1.50	2.04	1.98	5.88	2.22	5.63	1.56	4.35	2.08	8.82	3.28	1.35	4.23	7.94	6.00	8.00	1.39	1.82	0.98	4.26	2.70	2.70	0.00	0.89	2.52	3.64	1.52	3.64	0.00	1.27	0.00	3.37	3.26	2.70	0.69	1.14	0.45	0.545668	0.816194
K	intron_retention		chr22	-	chr22:50722643-50723001				chr22:50722642-50722643;chr22:50723001-50723002		3.33	3.92	3.67	NA	0.00	NA	0.00	0.00	0.00	0.00	0.41	0.00	0.41	0.00	0.89	0.00	0.00	0.00	13.64	1.32	0.00	0.00	5.62	0.00	7.41	2.38	2.74	0.00	3.77	NA	4.00	4.96	11.43	1.10	3.88	1.45	5.67	1.85	-3.81	0.266211	1.000000
N	cassette	LILRB4	chr19	+	chr19:55174520-55175291	chr19:55174520-55174989;chr19:55175026-55175291		chr19:55174990-55175025			89.53	100.00	87.90	NA	85.71	NA	89.92	90.94	93.33	87.72	81.16	87.45	89.19	93.54	92.59	88.99	83.33	79.41	80.00	81.28	85.25	85.19	83.82	82.90	NA	86.20	87.59	85.57	88.00	83.45	80.34	78.57	NA	92.86	75.00	81.82	89.56	87.87	-1.69	0.572601	0.830407
N	jcn_only_AA	LGMN	chr14	-	chr14:93183793-93198993;chr14:93185186-93198993;chr14:93197765-93198993	chr14:93185190-93198993					93.13	92.61	94.72	94.62	90.27	90.62	94.91	93.16	94.38	94.01	94.02	94.29	93.94	93.76	94.67	94.81	95.03	94.76	91.43	95.96	96.03	94.83	94.76	94.76	85.07	93.54	93.40	93.99	94.87	93.57	94.56	96.24	88.46	92.08	93.17	93.83	92.02	93.65	1.63	0.111127	0.663989
K	jcn_only_AD	RP11-371E8.4,TMEM251	chr14	+	chr14:93651378-93652604	chr14:93651831-93652604		chr14:93651378-93651830	chr14:93651377-93651378		82.14	68.00	63.16	73.68	75.68	NA	82.72	83.78	79.41	82.98	82.07	79.17	74.60	86.11	72.22	83.87	68.67	71.43	61.11	78.79	80.00	80.00	72.84	87.50	NA	77.78	83.33	67.86	85.71	70.00	79.59	79.41	73.33	84.48	79.03	84.00	73.33	80.87	7.54	0.056473	0.535425
K	intron_retention	NUP214	chr9	+	chr9:134108889-134108949				chr9:134108888-134108889;chr9:134108949-134108950		100.00	97.76	97.30	100.00	97.22	96.30	95.74	95.00	94.74	100.00	100.00	100.00	93.62	100.00	100.00	100.00	97.44	92.31	92.31	90.62	94.03	92.86	95.65	NA	97.24	95.24	100.00	100.00	95.52	95.65	96.77	95.45	95.97	88.89	96.77	100.00	95.85	96.00	0.15	0.868040	1.000000
K	cassette	MAN2B1	chr19	-	chr19:12769159-12772073	chr19:12769159-12769241;chr19:12769325-12772073		chr19:12769242-12769324			97.53	88.98	93.06	96.67	94.85	100.00	99.85	100.00	100.00	100.00	100.00	100.00	99.84	99.37	99.65	99.70	99.67	100.00	96.67	95.83	96.05	97.79	96.00	97.58	95.54	98.34	96.15	99.42	98.41	100.00	96.81	89.90	77.08	94.23	91.38	96.77	96.11	97.94	1.83	0.224706	0.709176
K	intron_retention	CAMK1	chr3	-	chr3:9804898-9807442				chr3:9804897-9804898;chr3:9807442-9807443		0.00	0.00	7.14	NA	5.31	NA	0.45	0.00	0.00	0.00	0.43	0.00	0.72	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	1.91	0.00	0.00	0.00	2.08	0.00	1.27	0.00	0.00	0.00	1.11	1.67	3.39	1.45	0.58	0.00	-0.58	0.416397	1.000000
K	alternative_donor	EIF1AD	chr11	-	chr11:65767953-65769510	chr11:65767953-65769380		chr11:65769381-65769510	chr11:65769510-65769511		80.00	69.23	44.44	54.55	61.11	50.00	66.67	70.00	73.33	61.54	60.00	NA	64.71	50.00	72.22	70.00	60.87	NA	NA	60.00	35.71	64.29	55.56	NA	27.27	NA	58.33	NA	58.82	72.73	NA	64.29	31.25	57.14	55.00	65.00	64.71	65.00	0.29	0.282984	0.650093
N	alternative_last_exon	ZFAS1	chr20	+	chr20:47895746-47896474;chr20:47895746-47911939;chr20:47895746-47897021	chr20:47895746-47905581	chr20:47911940-47912275;chr20:47897022-47897718	chr20:47905582-47905797			25.00	39.06	30.19	34.38	36.56	42.54	30.61	17.50	13.79	19.05	20.34	24.44	17.65	21.21	19.28	19.05	13.33	22.50	44.44	31.71	41.18	18.42	31.37	25.86	34.34	18.18	29.31	20.51	22.64	23.21	32.20	25.32	47.24	25.00	35.71	27.27	36.70	23.11	-13.60	0.058033	0.253979
N	jcn_only_AA	NPC1	chr18	-	chr18:21099968-21113318;chr18:21103201-21113318;chr18:21109319-21113318;chr18:21086607-21113318;chr18:21102871-21113318;chr18:21109692-21113318	chr18:21112249-21113318		chr18:21086607-21099967;chr18:21099968-21102870;chr18:21102871-21103200;chr18:21103201-21109318;chr18:21109319-21109691;chr18:21109692-21112248	chr18:21086606-21086607;chr18:21099967-21099968;chr18:21102870-21102871;chr18:21103200-21103201;chr18:21109318-21109319;chr18:21109691-21109692		93.29	100.00	92.13	88.24	96.72	83.33	96.88	94.29	93.88	93.00	91.37	96.05	95.00	90.77	96.55	95.28	92.65	96.36	100.00	97.67	95.45	98.59	95.45	96.45	NA	93.18	94.74	95.38	95.83	95.35	94.59	97.70	92.31	95.50	93.51	95.91	96.88	93.79	-3.09	0.144399	0.663989
N	jcn_only_AD	SNX8	chr7	-	chr7:2317941-2347362;chr7:2317941-2339235;chr7:2317941-2352038;chr7:2317941-2353962;chr7:2317941-2351251	chr7:2317941-2354303		chr7:2339236-2347362;chr7:2347363-2351251;chr7:2351252-2352038;chr7:2352039-2353962;chr7:2353963-2354303	chr7:2347362-2347363;chr7:2351251-2351252;chr7:2352038-2352039;chr7:2353962-2353963;chr7:2354303-2354304		0.00	0.00	0.00	0.00	0.00	NA	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.373901	0.657607
K	intron_retention		chr3	+	chr3:183905232-183905451				chr3:183905231-183905232;chr3:183905451-183905452		0.00	15.00	9.26	NA	10.00	NA	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	7.50	0.00	1.82	0.00	NA	14.29	15.38	12.50	13.64	14.29	27.78	6.25	2.27	8.00	10.53	5.88	16.67	4.65	NA	11.54	9.52	12.82	7.50	3.12	-4.38	0.882173	1.000000
K	cassette	CDIPT	chr16	-	chr16:29872581-29874135	chr16:29872581-29873906;chr16:29874042-29874135		chr16:29873907-29874041			95.45	100.00	92.54	NA	90.00	NA	95.92	100.00	91.57	94.34	98.65	100.00	95.45	97.06	94.44	95.56	95.24	100.00	NA	100.00	80.77	88.24	89.29	86.67	NA	100.00	84.91	94.44	92.11	93.75	92.31	87.04	91.67	90.91	93.55	93.62	95.69	98.53	2.84	0.453339	0.754834
K	alternative_last_exon	CD55	chr1	+	chr1:207512763-207520476,chr1:207512763-207527351,chr1:207512763-207540098;chr1:207512763-207540714;chr1:207512763-207531860;chr1:207512763-207513735	chr1:207512763-207532890	chr1:207540715-207540832;chr1:207531861-207531966;chr1:207513736-207514111	chr1:207532891-207534311			88.46	88.24	91.04	88.57	73.33	87.50	NA	87.50	85.19	86.96	NA	87.88	63.64	85.71	78.87	90.48	NA	91.67	76.47	88.37	83.19	95.45	90.91	91.43	64.29	88.24	92.47	90.91	NA	93.94	76.47	81.86	66.67	88.00	70.00	92.59	66.67	87.87	21.20	0.037918	0.227559
K	alternative_acceptor	CCAR2	chr8	+	chr8:22475078-22475211	chr8:22475078-22475208		chr8:22475209-22475211	chr8:22475211-22475212		90.62	100.00	85.37	NA	95.65	NA	93.94	88.46	83.33	95.45	88.00	100.00	89.74	84.21	91.67	79.55	85.71	75.00	80.00	93.10	100.00	89.47	83.87	94.12	NA	86.36	81.82	94.44	96.00	90.00	85.19	94.87	100.00	92.00	96.88	90.00	93.94	87.41	-6.53	0.285515	0.709013
N	jcn_only_AA	MCOLN1	chr19	+	chr19:7594599-7595320;chr19:7594599-7595171	chr19:7594599-7595255		chr19:7595172-7595255;chr19:7595256-7595320	chr19:7595255-7595256;chr19:7595320-7595321		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.33	3.66	6.06	3.36	0.00	0.00	1.03	2.99	0.00	1.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.200195	0.663989
K	alternative_last_exon	CSF1	chr1	+	chr1:110467825-110471473	chr1:110467825-110468684	chr1:110471474-110473614	chr1:110468685-110469365			7.69	4.35	NA	4.00	4.35	4.76	8.75	8.33	6.67	8.18	6.31	13.74	14.29	4.65	0.00	4.23	5.56	5.66	NA	3.03	16.40	2.40	3.12	4.69	9.09	5.88	NA	7.03	5.88	6.06	6.90	20.00	7.84	4.52	3.66	4.96	8.75	6.39	-2.36	0.170761	0.392118
K	intron_retention	ACTG1	chr17	-	chr17:79478605-79478952				chr17:79478604-79478605;chr17:79478952-79478953		91.07	93.42	90.05	88.35	87.06	84.21	91.37	89.20	90.71	86.97	88.00	88.30	88.66	90.57	89.38	89.09	85.12	85.08	75.61	79.56	76.42	87.68	86.71	88.10	100.00	91.17	90.84	86.90	88.20	84.83	77.66	78.80	81.63	90.39	90.67	88.54	90.02	89.88	-0.13	0.944045	1.000000
N	jcn_only_AD	SIGLEC9	chr19	+	chr19:51630164-51630286;chr19:51630151-51630286	chr19:51629386-51630286		chr19:51629386-51630150;chr19:51630151-51630163	chr19:51629385-51629386;chr19:51630150-51630151		100.00	100.00	96.61	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	97.37	98.17	100.00	100.00	100.00	98.73	100.00	100.00	100.00	97.44	97.22	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.70	100.00	100.00	100.00	0.00	0.363217	0.657607
K	cassette	DUSP3	chr17	-	chr17:41847183-41852079	chr17:41847183-41851341;chr17:41851478-41852079		chr17:41851342-41851477			0.00	8.33	0.00	0.00	6.25	0.00	0.00	1.28	1.14	2.17	1.05	0.99	1.04	0.00	1.19	1.43	1.43	4.35	5.88	0.00	0.00	2.94	0.00	0.00	NA	0.00	0.00	2.86	0.00	5.00	0.00	3.70	0.00	1.75	0.00	1.49	1.04	0.00	-1.04	0.173076	0.709176
N	cassette	AP3S1	chr5	+	chr5:115205826-115249058;chr5:115230856-115249058	chr5:115230856-115238581,chr5:115205826-115238581;chr5:115238690-115249058		chr5:115238582-115238689			100.00	100.00	91.94	93.33	100.00	NA	98.88	98.21	97.62	100.00	100.00	96.67	100.00	97.92	100.00	98.65	100.00	98.53	100.00	94.12	100.00	100.00	97.80	100.00	NA	95.92	100.00	97.62	96.83	97.50	96.30	97.62	93.33	97.70	95.18	97.85	100.00	97.11	-2.89	0.406500	0.721792
K	intron_retention	SNHG15	chr7	-	chr7:45024026-45025619				chr7:45024025-45024026;chr7:45025619-45025620		10.71	16.00	14.08	3.08	5.00	4.90	NA	5.56	3.00	7.81	5.56	8.33	NA	6.67	5.68	9.88	5.88	11.90	0.00	24.00	9.72	19.70	19.23	19.61	0.00	10.53	6.74	10.20	10.00	9.92	12.50	10.83	11.76	18.18	22.22	21.64	5.88	10.62	4.74	0.809451	1.000000
K	jcn_only_AA	IFI16,ZBTB48	chr1	+	chr1:6647352-6647574	chr1:6647352-6647537		chr1:6647538-6647574	chr1:6647574-6647575		100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	100.00	100.00	NA	97.83	92.31	97.37	94.12	97.92	NA	100.00	100.00	96.23	100.00	100.00	NA	93.33	95.00	90.91	94.44	100.00	100.00	100.00	96.66	-3.34	0.528362	0.768903
K	cassette	SCFD1	chr14	+	chr14:31175092-31177195	chr14:31175092-31177022;chr14:31177083-31177195		chr14:31177023-31177082			2.50	7.35	2.27	13.04	6.12	0.00	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	9.52	2.86	2.70	4.17	5.13	7.69	0.00	0.00	0.00	7.69	4.65	6.06	5.88	7.69	3.12	6.67	3.03	5.77	1.56	2.44	0.88	0.597875	0.849174
K	cassette	MTIF3	chr13	-	chr13:28014587-28019224	chr13:28014587-28015153;chr13:28015215-28019224		chr13:28015154-28015214			10.53	0.00	0.00	NA	7.69	NA	0.00	6.67	4.55	0.00	11.11	NA	0.00	0.00	0.00	12.50	13.51	NA	0.00	5.56	0.00	NA	4.76	NA	NA	11.11	3.12	NA	9.68	NA	NA	11.54	NA	0.00	11.76	16.67	0.00	6.67	6.67	0.027758	0.421131
K	alternative_donor	MRPL33	chr2	+	chr2:27994667-27995540	chr2:27995253-27995540		chr2:27994667-27995252	chr2:27994666-27994667		3.51	4.76	7.50	0.00	3.12	0.00	1.01	0.00	0.00	1.03	0.00	0.00	0.93	0.00	0.00	0.00	0.74	0.00	4.35	9.30	1.75	6.25	4.41	3.03	2.94	4.65	3.30	1.64	0.92	1.33	11.76	10.42	3.57	3.45	4.48	5.88	3.25	4.08	0.83	0.385586	0.657675
N	alternative_donor	RPL34	chr4	+	chr4:109541958-109543106;chr4:109541869-109543106;chr4:109542102-109543106	chr4:109541757-109543106		chr4:109541757-109541868;chr4:109541869-109541957;chr4:109541958-109542101	chr4:109541756-109541757;chr4:109541868-109541869;chr4:109541957-109541958		90.59	94.95	94.41	95.36	96.26	96.80	96.91	92.45	96.03	90.43	94.16	95.70	96.63	96.30	95.51	96.24	94.12	90.91	93.67	86.44	93.10	92.76	96.08	95.54	97.29	93.85	95.40	96.80	98.11	96.84	88.51	91.25	94.12	92.02	93.16	96.49	95.79	91.52	-4.27	0.033832	0.349791
K	jcn_only_AD	SSBP1	chr7	+	chr7:141438304-141438923;chr7:141438394-141438923	chr7:141438211-141438923		chr7:141438211-141438303;chr7:141438304-141438393	chr7:141438210-141438211;chr7:141438303-141438304		68.97	67.57	71.79	71.43	61.29	78.57	78.85	82.35	52.38	77.08	78.69	87.18	88.52	72.73	63.64	76.11	83.87	80.00	75.86	70.37	62.79	70.27	70.67	79.31	NA	58.33	71.88	80.77	72.73	70.27	69.23	70.00	72.41	67.39	59.62	76.19	75.86	69.80	-6.06	0.215228	0.657607
N	jcn_only_AD	MRPL52	chr14	+	chr14:23299154-23299258;chr14:23299150-23299258	chr14:23299158-23299258		chr14:23299150-23299153;chr14:23299154-23299157	chr14:23299149-23299150;chr14:23299153-23299154		25.49	30.19	22.64	14.81	19.44	25.81	11.11	NA	9.52	14.29	9.68	29.41	11.11	0.00	13.64	9.76	12.70	28.57	34.72	23.08	23.91	18.75	34.09	35.71	29.41	57.14	29.41	25.00	20.69	30.77	28.57	20.00	25.00	23.08	26.92	28.57	27.20	25.49	-1.71	0.755795	0.874597
K	intron_retention	TAF1D	chr11	-	chr11:93464966-93465409				chr11:93464965-93464966;chr11:93465409-93465410		10.71	0.00	2.78	1.56	2.67	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.38	0.00	0.00	0.00	8.82	0.00	3.23	5.56	4.84	0.00	0.00	0.00	0.00	2.33	0.00	1.67	7.23	2.63	4.48	4.76	4.17	0.00	5.25	5.25	0.281261	1.000000
N	alternative_acceptor	DOCK10	chr2	-	chr2:225633665-225634927;chr2:225630883-225634927	chr2:225630555-225634927		chr2:225630555-225630882;chr2:225630883-225633664	chr2:225630554-225630555;chr2:225630882-225630883		90.85	96.59	85.71	100.00	97.78	100.00	98.73	98.53	100.00	100.00	98.59	100.00	97.22	98.46	100.00	100.00	96.69	100.00	100.00	94.06	100.00	96.97	90.98	93.22	100.00	95.49	90.91	96.43	95.40	100.00	95.74	93.48	100.00	89.47	88.19	95.08	99.37	95.61	-3.75	0.043072	0.570243
K	cassette	DDX39A	chr19	-	chr19:14521147-14521800	chr19:14521147-14521232;chr19:14521418-14521800		chr19:14521233-14521417			10.00	5.71	19.05	16.28	10.77	20.00	7.84	11.11	9.52	5.33	2.78	7.50	7.14	9.52	20.00	4.81	5.81	2.44	6.12	12.20	8.33	11.54	7.53	12.50	13.64	24.14	21.21	11.11	10.61	19.05	18.60	18.18	8.93	10.00	10.26	14.93	7.49	11.65	4.16	0.056517	0.596356
N	alternative_donor	PCMT1	chr6	+	chr6:150123561-150131751;chr6:150123506-150131751;chr6:150131260-150131751	chr6:150123553-150131751		chr6:150123506-150123552;chr6:150123553-150123560;chr6:150123561-150131259	chr6:150123505-150123506;chr6:150123552-150123553;chr6:150123560-150123561		33.60	31.54	27.91	40.66	34.88	52.46	42.05	47.13	41.86	42.55	45.00	51.06	43.27	51.92	50.00	51.95	55.93	46.81	37.50	37.29	42.05	37.50	39.02	46.73	38.20	43.00	30.77	39.47	43.14	51.96	35.90	32.32	36.81	39.81	38.85	40.88	37.85	40.14	2.29	0.363947	0.650093
N	alternative_donor	ADRBK1	chr11	+	chr11:67044820-67046670	chr11:67045345-67046670		chr11:67044820-67045344	chr11:67044819-67044820		1.41	3.45	2.20	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.86	0.00	0.00	NA	11.54	0.00	0.00	0.00	3.12	0.00	2.76	0.00	1.57	0.00	0.00	NA	0.00	2.22	12.50	0.00	1.82	0.00	3.10	0.00	-3.10	0.081067	0.470724
N	alternative_acceptor	C17orf62	chr17	-	chr17:80402880-80403739;chr17:80402538-80403739	chr17:80402468-80403739		chr17:80402468-80402537;chr17:80402538-80402879	chr17:80402467-80402468;chr17:80402537-80402538		95.56	92.52	95.53	92.31	96.23	100.00	99.15	99.02	99.24	96.67	100.00	96.00	96.90	98.45	97.94	92.50	97.87	93.75	100.00	95.71	96.67	95.65	95.18	90.00	97.62	96.69	95.20	91.67	96.72	92.96	96.59	96.34	100.00	95.65	93.94	93.60	98.39	96.64	-1.75	0.607400	0.849621
K	intron_retention	GSTK1	chr7	+	chr7:142964827-142965183				chr7:142964826-142964827;chr7:142965183-142965184		5.41	2.31	5.77	0.00	2.55	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.96	0.00	0.00	0.00	1.60	2.94	1.76	0.00	2.09	2.97	0.00	4.35	5.32	0.00	2.22	0.74	2.86	5.23	1.08	1.00	4.17	3.83	0.86	2.90	2.04	0.509328	1.000000
K	jcn_only_AD	ILKAP	chr2	-	chr2:239096899-239098493;chr2:239096899-239098503	chr2:239096899-239098499		chr2:239098494-239098499;chr2:239098500-239098503	chr2:239098499-239098500;chr2:239098503-239098504		0.00	0.00	10.00	0.00	5.41	9.09	14.29	0.00	0.00	5.41	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.70	NA	NA	0.00	0.00	0.00	3.70	0.00	0.00	8.33	8.70	0.00	4.17	4.17	0.00	-4.17	0.203040	0.657607
N	alternative_acceptor	MYL5	chr4	+	chr4:673808-674297	chr4:673808-674282		chr4:674283-674297	chr4:674297-674298		3.45	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	7.14	0.00	0.00	5.00	2.27	NA	0.00	0.00	0.00	0.00	0.00	4.55	4.76	5.41	0.00	1.73	1.73	0.192222	0.660713
K	alternative_first_exon	CSNK2B,XXbac-BPG32J3.22	chr6	+	chr6:31633986-31634597;chr6:31633271-31634597	chr6:31634174-31634597,chr6:31634265-31634597	chr6:31633841-31633985;chr6:31633013-31633270	chr6:31634132-31634173			1.32	0.00	1.20	6.06	3.17	7.14	0.92	1.10	0.00	2.74	0.92	0.00	0.73	1.01	0.00	0.89	0.00	0.00	4.65	5.45	3.23	6.06	2.35	8.33	0.00	4.94	2.44	7.81	1.22	2.44	4.65	1.92	2.94	1.79	3.33	5.08	0.82	2.99	2.16	0.214237	0.423712
K	intron_retention	ZFAS1	chr20	+	chr20:47897108-47897439				chr20:47897107-47897108;chr20:47897439-47897440		1.72	0.00	1.33	0.00	0.00	1.06	0.00	0.00	0.00	1.32	0.00	0.00	0.00	0.00	1.47	1.20	0.00	2.13	0.00	5.00	2.00	0.00	0.00	2.82	0.00	1.14	0.00	0.00	0.00	0.00	2.70	2.04	0.87	1.61	0.00	4.05	0.00	1.43	1.43	0.398474	1.000000
K	jcn_only_AD	TMEM205	chr19	-	chr19:11456305-11456802;chr19:11456305-11456883	chr19:11456305-11456683		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		3.51	7.50	5.30	5.26	9.26	0.00	2.63	3.57	1.79	6.67	3.77	6.00	1.79	3.12	3.30	4.08	0.00	7.14	2.30	0.00	2.99	4.35	4.35	10.26	0.00	3.57	3.08	0.00	3.03	7.35	2.44	3.36	6.90	2.38	7.14	3.66	2.46	3.31	0.85	0.563217	0.779248
K	intron_retention	HMGN2	chr1	+	chr1:26799054-26799098				chr1:26799053-26799054;chr1:26799098-26799099		86.67	89.55	89.39	73.33	82.26	78.57	85.62	86.08	82.98	87.27	90.05	91.87	84.48	82.35	81.94	88.39	91.90	88.33	93.18	85.94	92.42	96.43	92.68	90.48	100.00	86.21	92.21	100.00	88.89	87.23	91.18	92.75	90.00	91.67	84.75	88.68	89.78	86.14	-3.63	0.292203	1.000000
K	intron_retention	SLC11A1	chr2	+	chr2:219251465-219251882				chr2:219251464-219251465;chr2:219251882-219251883		4.54	8.00	7.86	6.90	7.32	NA	1.52	2.67	2.56	3.70	3.50	0.00	3.06	1.96	6.06	3.17	3.87	0.00	2.70	6.52	5.49	8.70	11.88	2.78	16.67	9.23	10.66	14.63	10.57	2.70	10.14	6.51	0.00	11.11	7.50	3.03	2.88	5.53	2.65	0.884340	1.000000
N	alternative_donor	IKBKB	chr8	+	chr8:42182880-42183487;chr8:42180017-42183487	chr8:42180013-42183487		chr8:42180013-42180016;chr8:42180017-42182879	chr8:42180012-42180013;chr8:42180016-42180017		100.00	97.62	98.00	100.00	96.67	95.00	100.00	100.00	100.00	100.00	96.00	NA	95.92	100.00	96.97	95.83	100.00	100.00	96.77	100.00	94.74	96.43	97.67	95.45	95.74	100.00	97.14	100.00	97.37	100.00	100.00	100.00	100.00	95.24	97.92	95.00	97.19	100.00	2.81	0.031369	0.340286
N	alternative_donor	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99964788-99964971;chr7:99959007-99964971	chr7:99957161-99964971		chr7:99957161-99959006;chr7:99959007-99964787	chr7:99957160-99957161;chr7:99959006-99959007		94.74	96.92	96.77	100.00	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	93.33	NA	NA	NA	100.00	95.65	100.00	100.00	96.67	100.00	100.00	96.00	98.00	100.00	96.00	100.00	97.78	98.78	100.00	95.83	96.30	97.44	100.00	95.83	-4.17	0.019768	0.273169
K	jcn_only_AA	MBD1	chr18	-	chr18:47796189-47799046;chr18:47796182-47799046	chr18:47797911-47799046		chr18:47796182-47796188;chr18:47796189-47797910	chr18:47796181-47796182;chr18:47796188-47796189		61.11	64.71	53.33	66.67	62.50	NA	66.67	58.06	62.50	52.94	55.56	47.83	63.64	65.12	72.73	65.00	57.14	33.33	100.00	70.00	65.00	58.82	57.58	60.87	NA	54.76	72.09	26.67	53.57	43.48	58.62	64.44	85.71	72.73	64.86	50.00	66.67	59.86	-6.81	0.108460	0.663989
K	intron_retention	RNH1	chr11	-	chr11:498516-500541				chr11:498515-498516;chr11:500541-500542		89.04	87.17	100.00	92.41	92.42	89.16	94.25	89.47	92.65	91.96	95.60	96.08	92.88	91.67	88.42	90.91	93.60	93.33	85.31	90.38	92.86	90.18	91.24	94.34	89.13	94.55	91.30	92.97	91.77	90.68	91.89	92.59	84.83	92.72	92.26	90.61	88.15	91.03	2.88	0.797452	1.000000
N	alternative_donor	MRAS	chr3	+	chr3:138117411-138119375;chr3:138118639-138119375	chr3:138117415-138119375		chr3:138117411-138117414;chr3:138117415-138118638	chr3:138117410-138117411;chr3:138117414-138117415		0.00	NA	5.88	NA	7.14	NA	3.45	4.26	3.17	6.31	3.08	4.05	2.86	3.51	0.00	2.97	3.20	3.64	0.00	0.00	3.23	0.00	1.82	4.41	NA	4.08	7.14	3.57	3.45	3.45	2.17	0.00	0.00	3.41	2.53	1.35	1.43	2.84	1.41	0.552658	0.784198
K	intron_retention	CTC-250I14.6	chr19	-	chr19:13264037-13264378				chr19:13264036-13264037;chr19:13264378-13264379		100.00	100.00	100.00	100.00	93.75	100.00	96.67	99.30	96.47	98.46	100.00	100.00	100.00	100.00	96.77	100.00	100.00	96.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.73	97.10	92.86	100.00	95.45	100.00	96.30	100.00	97.30	100.00	96.67	100.00	100.00	0.00	0.970429	1.000000
N	jcn_only_AD	SIGLEC9	chr19	+	chr19:51631433-51631670;chr19:51631426-51631670	chr19:51631297-51631670		chr19:51631297-51631425;chr19:51631426-51631432	chr19:51631296-51631297;chr19:51631425-51631426		100.00	100.00	95.52	100.00	96.97	100.00	99.12	100.00	92.50	95.38	97.60	91.84	100.00	96.25	95.65	99.28	100.00	100.00	98.84	100.00	100.00	93.62	100.00	93.10	100.00	100.00	100.00	95.45	97.69	100.00	95.45	100.00	100.00	100.00	95.95	93.75	100.00	100.00	0.00	0.296941	0.657607
K	coord_cassette	SDHA	chr5	+	chr5:240592-254507	chr5:240592-251106;chr5:251219-251452;chr5:251584-254507		chr5:251107-251218;chr5:251453-251583			97.06	94.89	94.74	97.56	97.20	97.83	98.00	100.00	100.00	96.83	100.00	93.18	95.79	100.00	95.56	93.06	98.82	100.00	98.91	96.83	97.03	97.78	97.89	100.00	100.00	100.00	100.00	100.00	96.43	95.31	97.94	97.50	96.43	94.37	92.41	96.47	97.22	98.97	1.75	0.231009	0.643829
N	alternative_donor	TOMM5	chr9	-	chr9:37588930-37592408;chr9:37588930-37592249;chr9:37588930-37592412;chr9:37588930-37592287	chr9:37588930-37592306		chr9:37592250-37592287;chr9:37592288-37592306;chr9:37592307-37592408;chr9:37592409-37592412	chr9:37592287-37592288;chr9:37592306-37592307;chr9:37592408-37592409;chr9:37592412-37592413		7.14	0.00	0.00	0.00	2.00	0.00	0.00	0.00	2.22	2.33	2.67	1.72	0.00	0.00	1.99	1.25	0.95	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
K	intron_retention		chr17	.	chr17:40717824-40717923				chr17:40717823-40717824;chr17:40717923-40717924		1.89	2.50	2.50	5.00	1.37	5.88	2.22	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	5.00	2.91	5.00	4.35	3.03	5.79	2.63	1.67	7.50	2.17	4.26	9.43	6.78	6.61	0.00	5.00	2.70	2.36	2.26	-0.10	0.996161	1.000000
K	intron_retention	ARL6IP4	chr12	+	chr12:123465293-123465675				chr12:123465292-123465293;chr12:123465675-123465676		8.70	13.40	25.00	15.79	9.43	9.09	5.41	12.50	10.71	5.77	2.74	2.50	5.13	10.00	25.00	7.89	4.71	6.45	11.86	9.09	6.38	25.00	17.46	17.65	13.70	NA	17.24	15.38	14.06	10.71	16.67	18.52	7.84	7.14	8.70	9.52	9.85	10.00	0.15	0.744809	1.000000
K	alternative_acceptor	TMEM120A	chr7	-	chr7:75616542-75616677	chr7:75616604-75616677		chr7:75616542-75616603	chr7:75616541-75616542		91.94	96.49	96.43	88.24	93.48	93.15	89.29	100.00	91.78	91.67	93.10	96.30	93.75	100.00	85.33	93.33	84.62	89.47	74.07	80.65	90.00	81.82	77.27	72.73	84.42	92.31	95.92	78.57	84.85	93.55	88.89	89.19	84.13	86.36	89.47	87.50	86.86	92.12	5.27	0.261738	0.709013
N	alternative_acceptor	AP3S2,C15orf38-AP3S2	chr15	-	chr15:90395714-90414706;chr15:90404330-90414706;chr15:90408926-90414706	chr15:90380955-90414706		chr15:90380955-90395713;chr15:90395714-90404329;chr15:90404330-90408925	chr15:90380954-90380955;chr15:90395713-90395714;chr15:90404329-90404330		100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	90.00	100.00	100.00	NA	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709013
K	jcn_only_AA	DDB1	chr11	-	chr11:61068405-61069728	chr11:61068409-61069728		chr11:61068405-61068408	chr11:61068404-61068405		0.00	0.00	0.91	0.00	0.75	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	1.41	1.61	0.50	2.67	0.00	0.00	1.03	0.00	0.00	0.00	6.49	4.21	6.06	1.08	1.38	1.70	0.76	0.00	-0.76	0.722920	0.877224
K	alternative_donor	LMNA	chr1	+	chr1:156108399-156108870	chr1:156108549-156108870		chr1:156108399-156108548	chr1:156108398-156108399		100.00	100.00	100.00	100.00	99.17	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	96.97	100.00	99.07	96.97	100.00	100.00	100.00	100.00	100.00	100.00	94.29	100.00	100.00	100.00	100.00	94.92	100.00	100.00	0.00	0.363217	0.650093
K	intron_retention	SSNA1	chr9	+	chr9:140083231-140083517				chr9:140083230-140083231;chr9:140083517-140083518		7.14	18.27	15.15	22.22	21.18	17.86	14.85	21.82	21.52	15.22	11.30	6.25	10.56	20.83	30.00	18.39	11.72	4.08	9.57	7.84	18.09	17.95	12.79	7.14	15.62	14.58	16.67	18.00	15.48	11.76	20.00	15.07	11.58	15.56	16.33	12.96	13.21	17.29	4.07	0.953203	1.000000
K	intron_retention	DGKA	chr12	+	chr12:56346717-56346823				chr12:56346716-56346717;chr12:56346823-56346824		3.39	0.00	7.23	0.00	1.92	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	1.67	0.00	6.38	NA	0.00	3.39	3.30	0.00	0.00	0.00	0.00	1.28	0.00	10.00	3.23	0.00	0.00	0.00	0.00	0.480625	1.000000
N	alternative_acceptor	CTSZ	chr20	-	chr20:57569225-57571693;chr20:57571118-57571693	chr20:57570815-57571693		chr20:57569225-57570814;chr20:57570815-57571117	chr20:57569224-57569225;chr20:57570814-57570815		90.19	94.00	91.38	94.05	95.33	92.53	99.52	98.92	99.18	98.44	99.35	99.41	99.73	99.09	98.31	99.23	99.08	99.33	97.26	95.26	97.78	94.63	96.66	93.78	95.88	97.21	95.93	97.00	97.25	97.06	95.74	94.18	97.19	96.84	96.87	95.36	97.22	96.47	-0.75	0.477152	0.777631
N	coord_cassette	NDUFS2	chr1	+	chr1:161179722-161180380	chr1:161179722-161179900;chr1:161179979-161180093;chr1:161180180-161180380		chr1:161179901-161179978;chr1:161180094-161180179			96.15	100.00	95.29	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.15	97.65	100.00	100.00	100.00	100.00	88.31	100.00	100.00	98.15	100.00	100.00	100.00	0.00	0.206039	0.643829
K	cassette	SDHC	chr1	+	chr1:161293461-161310383	chr1:161293461-161298185;chr1:161298288-161310383		chr1:161298186-161298287			95.74	77.78	91.04	NA	93.55	NA	93.30	94.44	92.13	88.89	95.21	95.65	93.23	93.15	91.95	92.81	92.56	95.65	75.00	91.11	92.00	89.36	93.55	89.55	NA	95.24	93.75	88.89	95.52	91.43	92.86	90.57	90.00	88.61	92.31	93.94	90.00	93.80	3.80	0.115373	0.709176
K	intron_retention	TRIM28	chr19	+	chr19:59061018-59061103				chr19:59061017-59061018;chr19:59061103-59061104		6.76	2.61	7.14	2.63	1.99	2.15	0.00	0.00	2.11	0.00	0.00	0.00	0.61	1.23	0.78	0.69	0.00	0.00	3.78	7.69	6.21	4.05	2.75	3.33	0.00	2.04	2.90	0.00	1.75	2.38	14.77	10.78	6.67	6.15	4.55	3.80	1.61	4.40	2.79	0.551867	1.000000
K	intron_retention	STAB1	chr3	+	chr3:52539953-52540185				chr3:52539952-52539953;chr3:52540185-52540186		3.90	7.14	4.00	0.00	3.03	0.00	0.42	0.00	0.00	0.00	0.10	0.00	0.70	0.00	0.00	0.00	0.18	0.00	8.54	0.00	NA	0.88	0.79	0.60	9.42	0.00	6.25	0.00	1.49	0.00	0.00	2.63	11.11	0.00	2.06	0.25	7.84	0.00	-7.84	0.067508	1.000000
K	cassette	CWF19L1	chr10	-	chr10:101995522-101997778	chr10:101995522-101996606;chr10:101996727-101997778		chr10:101996607-101996726			78.95	100.00	86.96	NA	76.92	NA	88.89	90.00	95.00	100.00	100.00	NA	84.00	83.33	84.62	88.24	91.30	NA	NA	86.67	83.33	75.00	89.19	85.71	NA	91.30	68.97	88.24	90.91	92.31	84.62	82.61	100.00	91.30	86.21	94.74	94.44	85.65	-8.80	0.165935	0.709176
K	intron_retention	P4HB	chr17	-	chr17:79803524-79817165				chr17:79803523-79803524;chr17:79817165-79817166		90.39	93.25	91.41	88.89	89.57	87.07	93.73	92.75	94.42	93.91	94.34	94.85	93.36	92.82	94.03	94.02	92.59	93.69	91.95	96.45	95.04	96.23	95.69	94.99	94.24	93.41	91.41	93.29	93.38	94.88	96.28	96.79	93.23	92.11	93.36	92.27	93.31	93.11	-0.19	0.621445	1.000000
K	alternative_acceptor	DEDD	chr1	-	chr1:161092965-161093628	chr1:161093012-161093628		chr1:161092965-161093011	chr1:161092964-161092965		100.00	100.00	95.00	NA	100.00	NA	100.00	100.00	100.00	93.10	100.00	100.00	93.10	100.00	97.30	100.00	92.68	100.00	NA	93.10	100.00	100.00	93.75	100.00	100.00	97.56	91.89	100.00	100.00	100.00	90.91	100.00	NA	100.00	100.00	100.00	100.00	98.78	-1.22	0.587381	0.844027
K	intron_retention	FLAD1	chr1	+	chr1:154963005-154965188				chr1:154963004-154963005;chr1:154965188-154965189		0.00	0.00	0.00	4.35	2.56	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	1.89	0.00	0.00	0.00	0.00	0.00	3.92	5.26	0.00	0.00	0.00	0.00	0.00	7.69	0.00	0.00	5.26	5.88	0.00	0.00	0.00	0.493490	1.000000
K	intron_retention		chr12	+	chr12:32893175-32893342				chr12:32893174-32893175;chr12:32893342-32893343		4.55	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	4.00	NA	0.00	2.22	0.00	0.00	0.00	0.00	2.44	NA	2.94	6.25	5.56	0.00	0.00	0.00	0.594508	1.000000
N	jcn_only_AA		chr8	+	chr8:24199271-24200185;chr8:24199271-24200501	chr8:24199271-24200613		chr8:24200186-24200501;chr8:24200502-24200613	chr8:24200501-24200502;chr8:24200613-24200614		85.00	90.00	82.03	NA	89.47	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	92.00	80.00	95.92	95.04	95.38	NA	86.96	86.79	100.00	97.87	100.00	89.09	90.22	94.59	96.70	100.00	96.18	94.59	90.55	-4.05	0.343378	0.663989
N	jcn_only_AA	KIFC2	chr8	+	chr8:22424227-22424336	chr8:22424227-22424334		chr8:22424335-22424336	chr8:22424336-22424337		92.86	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	NA	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.663989
K	intron_retention	NCBP2	chr3	-	chr3:196663954-196664380				chr3:196663953-196663954;chr3:196664380-196664381		5.00	11.76	7.32	5.88	9.30	14.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	2.04	0.00	3.85	9.52	8.00	15.00	5.08	10.34	0.00	0.00	3.77	7.14	11.11	7.50	11.76	2.56	9.26	8.89	3.56	2.50	-1.06	0.999253	1.000000
N	jcn_only_AA		chr11	+	chr11:67069295-67069599	chr11:67069295-67069589		chr11:67069590-67069599	chr11:67069599-67069600		100.00	98.57	99.32	94.29	98.78	100.00	100.00	100.00	100.00	NA	100.00	NA	98.44	100.00	100.00	NA	100.00	NA	98.40	100.00	99.46	93.33	98.31	100.00	98.72	100.00	98.45	100.00	97.62	NA	100.00	99.34	98.12	100.00	100.00	100.00	98.50	100.00	1.50	0.005020	0.450187
K	alternative_first_exon	SLC16A3	chr17	+	chr17:80186406-80193858,chr17:80176061-80193858,chr17:80193106-80193858,chr17:80188939-80193858,chr17:80193580-80193858;chr17:80190236-80193858;chr17:80192877-80193858;chr17:80186422-80193858	chr17:80186983-80193858	chr17:80190108-80190235;chr17:80192775-80192876;chr17:80186282-80186421	chr17:80186908-80186982			84.53	75.64	83.33	91.67	82.42	NA	77.97	82.09	80.95	85.34	84.67	76.92	80.47	85.63	86.12	89.71	85.14	81.82	85.00	77.56	83.72	94.59	87.98	84.62	82.22	85.00	86.67	93.33	89.60	100.00	79.44	76.47	81.48	90.48	84.62	88.89	80.97	83.31	2.34	0.337842	0.536334
K	jcn_only_AA	RBCK1	chr20	+	chr20:389424-390473;chr20:389424-390527	chr20:389424-390524		chr20:390474-390524;chr20:390525-390527	chr20:390524-390525;chr20:390527-390528		87.50	100.00	85.37	NA	100.00	93.48	94.00	97.69	91.27	90.00	93.18	94.06	88.00	94.35	96.95	88.64	95.56	92.98	100.00	95.56	90.62	86.67	91.11	91.30	100.00	94.34	100.00	97.22	100.00	92.62	89.66	100.00	100.00	91.30	91.67	92.39	100.00	94.34	-5.66	0.171630	0.663989
N	cassette	CMKLR1	chr12	-	chr12:108686737-108732803;chr12:108687442-108732803;chr12:108687442-108731670	chr12:108686737-108723771,chr12:108687442-108723771;chr12:108723985-108731670,chr12:108723985-108732803		chr12:108723772-108723984			67.74	41.18	60.61	NA	NA	NA	60.16	58.54	51.79	53.85	61.90	40.00	58.27	60.21	63.49	62.96	65.78	61.90	NA	69.57	NA	80.00	75.00	NA	41.67	56.99	53.85	55.56	69.44	NA	NA	57.14	NA	68.18	63.16	63.64	49.97	60.21	10.24	0.092271	0.658231
N	cassette	LONP1	chr19	-	chr19:5707155-5711781;chr19:5707838-5711781	chr19:5707838-5708352,chr19:5707155-5708352;chr19:5708415-5711781		chr19:5708353-5708414			100.00	66.67	100.00	NA	NA	NA	100.00	100.00	100.00	100.00	97.92	100.00	100.00	NA	100.00	100.00	100.00	100.00	NA	100.00	95.45	100.00	96.77	NA	100.00	NA	88.89	100.00	100.00	NA	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.391002	0.709410
K	jcn_only_AA	GUK1,SOX13	chr1	+	chr1:228334640-228335110	chr1:228334640-228335106		chr1:228335107-228335110	chr1:228335110-228335111		97.67	96.52	95.60	97.46	98.09	98.71	99.28	98.03	98.04	98.85	98.76	100.00	98.92	98.00	97.92	100.00	99.26	99.06	95.75	97.31	97.89	97.74	97.74	99.31	100.00	98.37	98.47	98.28	98.22	98.18	97.14	94.86	96.54	97.96	97.82	98.03	97.73	97.84	0.11	0.916849	0.971511
K	intron_retention		chr19	-	chr19:54756851-54757880				chr19:54756850-54756851;chr19:54757880-54757881		17.54	17.02	NA	0.00	18.06	0.00	1.92	3.33	NA	0.00	2.96	0.00	3.21	6.25	NA	1.67	4.42	0.74	12.50	14.29	NA	6.45	21.93	9.62	9.89	11.74	16.00	18.33	20.71	5.81	7.27	14.29	8.57	15.22	23.60	10.75	9.23	9.50	0.27	0.998225	1.000000
N	alternative_donor	ATG4B	chr2	+	chr2:242610857-242611605;chr2:242610967-242611605;chr2:242610841-242611605	chr2:242610821-242611605		chr2:242610821-242610840;chr2:242610841-242610856;chr2:242610857-242610966	chr2:242610820-242610821;chr2:242610840-242610841;chr2:242610856-242610857		81.13	89.21	74.58	86.96	86.54	92.45	92.31	94.12	85.19	81.82	94.59	100.00	88.00	84.21	84.00	96.43	89.66	NA	94.39	84.00	79.75	76.32	84.38	68.75	90.29	62.50	70.15	70.00	79.66	62.96	79.03	81.25	93.04	72.22	68.33	50.82	91.30	82.56	-8.74	0.057673	0.421157
N	jcn_only_AD		chr15	-	chr15:41067795-41068265;chr15:41067795-41068387	chr15:41067795-41068393		chr15:41068266-41068387;chr15:41068388-41068393	chr15:41068387-41068388;chr15:41068393-41068394		100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.74	100.00	100.00	NA	100.00	NA	95.00	100.00	95.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.50	100.00	91.67	100.00	96.97	100.00	96.55	100.00	100.00	100.00	0.00	0.535927	0.757311
K	intron_retention	CYTH4	chr22	+	chr22:37699444-37705252				chr22:37699443-37699444;chr22:37705252-37705253		3.42	3.03	3.72	NA	3.33	NA	0.48	0.55	0.40	1.43	0.47	0.63	2.61	1.04	1.43	0.00	1.42	0.76	6.25	4.23	4.08	6.67	5.17	3.92	7.84	3.08	4.14	3.06	2.47	4.00	1.33	2.07	8.70	3.70	3.80	5.05	4.64	2.21	-2.43	0.650453	1.000000
K	intron_retention	CFL1	chr11	-	chr11:65623714-65624401				chr11:65623713-65623714;chr11:65624401-65624402		50.00	52.94	41.67	NA	18.18	NA	18.75	40.00	NA	NA	NA	NA	53.85	53.33	41.67	60.00	NA	NA	NA	62.50	33.33	NA	62.50	NA	NA	50.00	41.67	NA	NA	NA	46.15	51.61	33.33	NA	29.41	35.71	43.13	50.00	6.87	0.445779	1.000000
N	jcn_only_AD	FMNL1	chr17	+	chr17:43307659-43307970;chr17:43302973-43307970;chr17:43299621-43307970;chr17:43307517-43307970	chr17:43306855-43307970		chr17:43299621-43302972;chr17:43302973-43306854;chr17:43306855-43307516;chr17:43307517-43307658	chr17:43299620-43299621;chr17:43302972-43302973;chr17:43306854-43306855;chr17:43307516-43307517		1.12	0.00	2.05	NA	0.00	NA	0.00	0.00	1.29	0.00	0.00	2.50	0.00	1.28	0.00	0.00	0.00	0.00	0.00	4.71	0.00	6.67	2.90	0.00	0.00	0.00	0.00	0.00	0.00	NA	5.00	2.88	NA	0.00	4.00	0.00	0.00	1.20	1.20	0.080764	0.629777
K	intron_retention	CTSL	chr9	+	chr9:90341169-90342508				chr9:90341168-90341169;chr9:90342508-90342509		26.22	32.26	22.31	32.64	27.87	32.14	32.68	35.62	39.54	36.78	30.70	31.62	31.72	39.50	38.99	30.82	27.84	29.10	25.00	22.60	30.14	30.99	24.83	24.54	26.32	24.23	25.85	34.45	26.85	29.62	22.71	20.25	22.64	28.11	25.00	31.47	29.02	25.23	-3.79	0.870127	1.000000
N	cassette	LINC00152	chr2	+	chr2:87769824-87820725;chr2:87769562-87820725;chr2:87769613-87820725;chr2:87755165-87820725	chr2:87755165-87779741,chr2:87769613-87779741,chr2:87769562-87779741,chr2:87769824-87779741;chr2:87779943-87820725		chr2:87779742-87779942			NA	0.00	NA	7.65	3.05	9.74	11.43	11.11	11.11	14.95	7.61	24.86	4.08	6.67	9.52	13.62	4.08	26.96	0.00	NA	2.50	12.94	6.76	22.00	4.17	7.14	0.00	22.00	5.74	26.98	6.25	0.00	0.00	5.19	0.00	8.60	2.04	6.90	4.86	0.069872	0.624766
N	alternative_acceptor	RNF19B	chr1	-	chr1:33399879-33403997;chr1:33402879-33403997	chr1:33402911-33403997		chr1:33399879-33402878;chr1:33402879-33402910	chr1:33399878-33399879;chr1:33402878-33402879		99.13	NA	97.30	96.23	94.74	98.72	100.00	99.32	99.65	97.01	96.00	99.75	90.00	99.01	98.84	98.86	94.87	99.58	93.75	99.53	98.78	97.44	96.43	99.64	NA	98.71	98.48	99.07	96.77	99.79	99.26	98.41	81.25	98.86	96.97	99.65	91.88	99.19	7.32	0.136881	0.635210
K	intron_retention	FCGR2B	chr1	+	chr1:161643864-161645046				chr1:161643863-161643864;chr1:161645046-161645047		14.29	0.00	23.40	NA	0.00	0.00	30.00	4.00	NA	NA	0.00	0.00	NA	7.14	NA	NA	NA	NA	0.00	7.22	3.85	4.00	4.26	3.03	0.00	0.00	13.33	NA	7.69	NA	0.00	11.11	6.67	0.00	0.00	4.17	0.00	5.57	5.57	0.974234	1.000000
N	alternative_donor	EEF1D,FAM49B	chr8	-	chr8:144663325-144663410;chr8:144663325-144663404;chr8:144663325-144663455	chr8:144663325-144663398		chr8:144663399-144663404;chr8:144663405-144663410;chr8:144663411-144663455	chr8:144663404-144663405;chr8:144663410-144663411;chr8:144663455-144663456		93.88	94.96	95.00	97.83	97.10	97.18	91.07	95.83	91.67	89.19	93.88	100.00	94.59	85.29	97.92	98.44	90.00	91.67	95.37	94.74	91.84	95.83	94.68	95.56	94.66	100.00	91.30	94.23	96.59	95.52	91.38	89.02	92.48	96.67	98.11	97.83	94.62	94.31	-0.31	0.879832	0.969920
N	jcn_only_AD		chr11	-	chr11:64662915-64663952	chr11:64662915-64663933		chr11:64663934-64663952	chr11:64663952-64663953		90.91	100.00	90.91	NA	NA	NA	NA	NA	100.00	NA	NA	NA	NA	NA	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	86.67	100.00	100.00	NA	NA	NA	100.00	93.75	94.74	NA	NA	NA	97.37	100.00	2.63	0.565356	0.779893
K	alternative_donor	FADS3	chr11	-	chr11:61643449-61643582	chr11:61643449-61643576		chr11:61643577-61643582	chr11:61643582-61643583		6.45	0.00	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	1.32	0.00	0.00	NA	0.00	0.00	1.64	0.00	0.00	4.55	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.862154	0.964607
K	intron_retention	AKR1A1	chr1	+	chr1:46033850-46034156				chr1:46033849-46033850;chr1:46034156-46034157		4.11	6.16	6.00	1.59	5.94	0.00	0.00	0.00	0.00	0.00	0.51	0.00	1.06	0.00	0.00	1.03	0.00	0.00	1.80	7.58	1.46	4.82	5.36	2.47	4.41	0.00	6.12	4.40	5.38	0.00	0.00	3.51	2.16	2.83	4.55	3.23	1.98	0.00	-1.98	0.840300	1.000000
N	jcn_only_AD		chr6	-	chr6:27106461-27113592;chr6:27106461-27114351;chr6:27106461-27114183	chr6:27106461-27114187					99.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	83.33	100.00	100.00	93.75	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.54	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.391422	0.657607
K	cassette	TKT	chr3	-	chr3:53269191-53274266	chr3:53269191-53271812;chr3:53271938-53274266		chr3:53271813-53271937			2.17	2.45	2.44	0.00	1.30	NA	0.33	0.00	1.19	1.08	0.49	0.84	0.95	0.00	1.20	0.42	0.47	0.98	0.00	6.45	2.13	3.41	1.12	1.06	1.79	3.03	1.63	1.37	2.31	0.00	6.67	3.37	1.82	1.47	1.55	1.38	1.37	2.60	1.23	0.200338	0.709176
N	alternative_acceptor	THEMIS2	chr1	+	chr1:28209555-28211805	chr1:28209555-28210134		chr1:28210135-28211805	chr1:28211805-28211806		42.79	29.55	45.66	10.00	22.73	7.69	3.57	5.42	4.85	5.13	4.60	3.80	5.48	4.74	7.74	7.14	4.17	4.26	9.09	46.31	17.65	50.00	34.57	46.55	NA	33.18	37.84	29.41	20.48	19.44	28.05	35.71	36.36	46.55	44.23	37.25	9.09	30.62	21.53	0.345059	0.709013
K	intron_retention	PDCD5	chr19	+	chr19:33076814-33077763				chr19:33076813-33076814;chr19:33077763-33077764		0.00	0.00	7.06	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.64	0.00	0.00	2.38	0.65	1.94	2.70	4.11	0.00	0.00	0.00	0.00	0.00	0.00	4.17	1.03	0.77	3.23	4.07	3.76	0.00	0.96	0.96	0.387460	1.000000
K	intron_retention	RALGDS	chr9	-	chr9:135974150-135975654				chr9:135974149-135974150;chr9:135975654-135975655		7.52	4.41	8.33	4.17	2.22	0.00	5.00	3.70	0.00	1.33	7.50	0.00	2.63	0.00	5.00	3.57	3.28	4.88	6.67	6.09	5.00	3.49	4.69	5.21	0.00	4.44	8.96	3.85	4.17	1.47	8.11	6.06	9.09	4.24	10.39	4.96	4.71	5.27	0.56	0.823493	1.000000
N	alternative_donor	PPIA	chr7	+	chr7:44836393-44838346	chr7:44837221-44838346		chr7:44836393-44837220	chr7:44836392-44836393		29.41	35.00	24.39	NA	33.33	NA	4.55	5.88	2.50	5.00	5.00	NA	6.06	5.88	6.35	5.77	8.57	0.00	28.57	26.67	9.09	35.71	34.38	43.48	NA	13.04	25.00	13.33	16.67	9.09	18.75	22.58	30.77	25.00	35.00	34.62	28.57	15.89	-12.68	0.586643	0.799662
N	alternative_donor	ACADVL	chr17	+	chr17:7127876-7127960;chr17:7127868-7127960	chr17:7127872-7127960		chr17:7127868-7127871;chr17:7127872-7127875	chr17:7127867-7127868;chr17:7127871-7127872		96.59	96.18	97.62	97.44	94.64	97.96	100.00	100.00	100.00	100.00	98.39	98.15	98.41	100.00	100.00	100.00	100.00	100.00	99.22	98.18	97.17	97.50	96.26	94.87	98.95	100.00	94.59	96.43	96.09	100.00	94.83	97.30	99.17	96.15	96.55	96.67	99.06	99.09	0.03	0.717711	0.885082
K	alternative_acceptor	CIRBP	chr19	+	chr19:1272051-1273599	chr19:1272051-1273492		chr19:1273493-1273599	chr19:1273599-1273600		100.00	100.00	100.00	90.91	100.00	100.00	NA	NA	NA	NA	NA	NA	NA	NA	93.75	NA	NA	NA	90.91	90.00	100.00	89.47	100.00	100.00	100.00	93.10	94.74	87.50	96.30	94.44	100.00	100.00	100.00	100.00	95.45	90.00	100.00	96.55	-3.45	0.586158	0.843374
K	alternative_acceptor	FBRSL1,ORMDL2	chr12	+	chr12:56211897-56212874	chr12:56211897-56212782		chr12:56212783-56212874	chr12:56212874-56212875		100.00	100.00	92.11	100.00	95.00	100.00	100.00	100.00	100.00	100.00	95.31	94.34	95.08	100.00	98.73	96.04	98.55	97.06	100.00	100.00	100.00	100.00	93.33	100.00	NA	100.00	100.00	95.83	100.00	95.92	100.00	100.00	95.24	89.13	91.67	98.11	100.00	100.00	0.00	0.177886	0.660713
K	intron_retention	CSNK1D	chr17	-	chr17:80206891-80207306				chr17:80206890-80206891;chr17:80207306-80207307		6.25	4.08	11.67	7.32	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00	1.10	2.00	0.00	5.56	1.96	5.88	5.71	9.43	14.29	3.28	7.69	2.27	1.45	1.96	9.76	9.30	7.32	3.08	5.88	6.36	2.04	4.42	2.38	0.634908	1.000000
K	cassette	GNB2L1	chr5	-	chr5:180665240-180666486	chr5:180665240-180666066;chr5:180666178-180666486		chr5:180666067-180666177			95.58	96.00	96.96	98.62	98.75	99.10	99.70	100.00	100.00	100.00	100.00	100.00	99.86	100.00	100.00	100.00	100.00	99.42	97.59	97.84	95.99	99.76	98.84	99.57	98.81	98.51	98.14	100.00	99.66	100.00	93.42	95.11	95.36	98.97	98.49	99.04	98.20	98.18	-0.02	0.808597	0.936947
N	cassette	RNF10	chr12	+	chr12:121000874-121001612	chr12:121000874-121001243;chr12:121001427-121001612		chr12:121001244-121001426			98.18	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	94.20	100.00	100.00	96.49	100.00	100.00	100.00	0.00	0.363217	0.709176
N	jcn_only_AD	IFI44	chr1	+	chr1:79126340-79128388;chr1:79125165-79128388;chr1:79127142-79128388	chr1:79126377-79128388		chr1:79125165-79126339;chr1:79126340-79126376;chr1:79126377-79127141	chr1:79125164-79125165;chr1:79126339-79126340;chr1:79126376-79126377		3.37	0.00	0.00	9.09	0.00	2.36	0.00	2.34	2.83	4.17	0.00	0.95	0.00	1.75	3.20	1.18	0.00	0.00	0.00	5.79	0.00	0.00	0.00	2.82	0.00	4.50	3.39	2.08	0.00	3.15	2.55	4.23	0.00	3.12	0.00	2.35	0.00	2.96	2.96	0.002788	0.170170
N	jcn_only_AD	DTX2P1,DTX2P1-UPK3BP1-PMS2P11	chr7	+	chr7:76631664-76633534;chr7:76631639-76633534	chr7:76632767-76633534					NA	NA	NA	NA	NA	NA	90.00	96.08	98.13	100.00	95.00	100.00	81.82	95.00	94.44	100.00	100.00	100.00	100.00	92.00	NA	100.00	96.30	92.86	NA	100.00	98.46	100.00	100.00	100.00	100.00	100.00	100.00	95.24	100.00	93.88	95.00	96.08	1.08	0.478668	0.726209
K	intron_retention	FDXR	chr17	-	chr17:72868259-72868990				chr17:72868258-72868259;chr17:72868990-72868991		9.09	7.14	8.70	NA	NA	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.69	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	53.33	6.25	5.71	NA	NA	NA	4.76	6.35	0.00	0.00	7.69	NA	0.00	5.50	5.50	0.647525	1.000000
N	alternative_last_exon	MBD4	chr3	-	chr3:129151450-129151940;chr3:129140647-129151940	chr3:129150422-129151940	chr3:129151019-129151449;chr3:129140210-129140646	chr3:129149787-129150421			0.00	2.27	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	3.70	0.00	0.00	NA	0.00	NA	5.88	0.00	0.00	0.00	0.00	NA	0.00	0.00	10.71	0.00	0.00	0.00	2.99	0.00	-2.99	0.073673	0.281549
K	alternative_donor	RBM17	chr10	+	chr10:6154325-6155470	chr10:6155032-6155470		chr10:6154325-6155031	chr10:6154324-6154325		7.58	7.50	12.12	1.48	1.43	1.27	1.89	2.53	1.72	1.89	1.41	0.95	4.48	2.11	5.38	2.61	2.97	1.96	0.00	10.00	2.88	5.83	8.89	9.78	4.17	9.26	10.96	6.30	7.69	4.19	4.00	5.81	1.72	13.51	7.32	10.47	3.03	5.79	2.76	0.174618	0.563271
N	cassette	ADA	chr20	-	chr20:43252971-43255096	chr20:43252971-43254209;chr20:43254326-43255096		chr20:43254210-43254325			92.96	90.62	95.00	95.18	89.58	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	88.00	95.12	93.75	96.13	96.30	98.20	NA	97.50	91.30	100.00	100.00	100.00	93.10	92.54	92.50	94.18	95.71	97.71	92.50	96.31	3.81	0.455218	0.755224
K	intron_retention	TUBGCP2	chr10	-	chr10:135097507-135098588				chr10:135097506-135097507;chr10:135098588-135098589		8.77	7.25	10.34	10.53	9.68	0.00	0.00	0.00	4.17	0.00	0.00	0.00	0.00	0.00	4.17	0.00	3.03	0.00	11.36	11.54	0.00	4.55	11.76	9.09	0.00	6.90	6.25	0.00	2.22	4.35	5.88	9.43	5.66	11.43	4.00	8.82	2.83	6.39	3.56	0.842109	1.000000
K	intron_retention	ARFGAP1	chr20	+	chr20:61920849-61921029				chr20:61920848-61920849;chr20:61921029-61921030		93.62	96.35	95.74	95.45	95.65	96.21	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	94.12	NA	95.00	97.06	94.66	100.00	95.71	96.55	95.78	85.71	96.15	93.33	92.31	94.03	94.52	96.05	94.12	96.00	100.00	95.16	96.06	94.52	-1.55	0.602946	1.000000
N	cassette	ETFA	chr15	-	chr15:76580287-76603690;chr15:76584855-76603690;chr15:76585042-76603690	chr15:76585042-76587931,chr15:76580287-76587931,chr15:76584855-76587931;chr15:76588079-76603690		chr15:76587932-76588078			79.49	88.00	81.36	NA	85.00	NA	82.41	74.00	71.67	83.70	85.34	87.06	81.51	89.74	85.48	81.91	87.27	83.56	80.00	72.22	82.61	84.09	78.65	82.22	NA	85.19	85.37	84.21	80.70	83.33	72.73	85.11	75.00	89.66	82.86	83.78	81.51	76.75	-4.77	0.511096	0.791208
K	intron_retention	AAMP	chr2	-	chr2:219134258-219134688				chr2:219134257-219134258;chr2:219134688-219134689		6.35	0.00	3.08	NA	0.00	NA	2.41	0.00	0.00	0.00	1.19	0.00	3.37	4.44	2.22	0.00	0.89	0.00	NA	4.88	3.85	0.00	0.00	0.00	NA	4.44	0.00	0.00	0.00	0.00	11.54	7.25	0.00	0.00	1.85	2.86	1.21	4.66	3.46	0.383970	1.000000
K	intron_retention	TBC1D9B	chr5	-	chr5:179315313-179318378				chr5:179315312-179315313;chr5:179318378-179318379		4.35	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.64	0.00	0.86	0.00	0.00	1.59	0.00	0.00	0.00	0.00	NA	NA	2.63	0.00	20.83	0.00	4.00	7.14	2.13	NA	0.00	0.00	NA	6.45	1.69	4.76	0.00	0.00	0.00	0.583870	1.000000
K	intron_retention	TRIM28	chr19	+	chr19:59057264-59058742				chr19:59057263-59057264;chr19:59058742-59058743		8.11	14.29	1.23	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	2.78	0.00	7.14	1.67	3.33	0.00	0.00	1.37	0.00	0.00	0.00	8.00	6.67	7.14	5.13	4.08	3.92	0.00	1.39	1.39	0.863312	1.000000
K	intron_retention	PCBP2	chr12	+	chr12:53861628-53862563				chr12:53861627-53861628;chr12:53862563-53862564		20.00	4.17	23.81	13.64	18.92	NA	3.12	3.33	2.17	3.23	2.82	0.00	4.23	3.12	6.25	4.11	6.15	0.00	15.00	21.74	5.88	20.00	10.71	22.22	0.00	25.00	36.00	20.00	8.70	15.38	15.38	18.75	12.50	31.91	23.91	23.21	4.20	17.69	13.49	0.296795	1.000000
K	intron_retention	COMMD4	chr15	+	chr15:75631446-75631604				chr15:75631445-75631446;chr15:75631604-75631605		8.43	7.48	10.87	0.00	5.56	1.30	3.57	0.00	3.33	0.00	2.22	3.57	1.01	3.51	6.98	0.00	3.08	0.00	2.48	9.30	4.26	12.50	7.06	4.17	2.86	13.73	14.29	5.88	5.88	5.66	10.00	11.86	5.61	8.82	8.82	5.56	3.21	8.87	5.65	0.300063	1.000000
K	intron_retention		chr2	-	chr2:175432802-175436403				chr2:175432801-175432802;chr2:175436403-175436404		5.56	14.81	4.82	NA	15.15	NA	2.68	2.80	3.03	5.08	7.81	6.45	2.23	4.69	1.74	8.70	8.93	8.33	21.43	4.35	5.88	0.00	5.66	6.25	16.00	2.49	3.17	14.29	5.88	4.55	11.46	10.00	21.74	7.69	10.42	6.06	15.41	4.52	-10.89	0.554889	1.000000
N	alternative_acceptor	OSBPL2	chr20	+	chr20:60859226-60861638;chr20:60859226-60860542	chr20:60859226-60860591		chr20:60860543-60860591;chr20:60860592-60861638	chr20:60860591-60860592;chr20:60861638-60861639		0.00	8.33	4.55	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	4.17	NA	NA	0.00	NA	0.00	3.57	4.00	NA	0.00	NA	5.00	2.94	NA	4.55	0.00	5.88	0.00	1.78	1.78	0.986605	0.995150
N	alternative_acceptor	KIAA0196	chr8	-	chr8:126044824-126049478;chr8:126044637-126049478	chr8:126048463-126049478		chr8:126044637-126044823;chr8:126044824-126048462	chr8:126044636-126044637;chr8:126044823-126044824		2.78	0.00	4.17	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.26	6.67	0.00	NA	0.00	4.00	0.00	0.00	1.54	NA	NA	0.00	2.27	0.00	0.00	NA	0.00	2.70	0.00	2.78	1.92	3.12	0.00	0.00	0.00	0.183221	0.660713
N	alternative_acceptor		chr2	+	chr2:26508440-26510466;chr2:26508440-26512181	chr2:26508440-26512785		chr2:26510467-26512181;chr2:26512182-26512785	chr2:26512181-26512182;chr2:26512785-26512786		90.48	96.34	88.78	96.20	97.21	97.09	100.00	98.15	98.63	99.26	100.00	100.00	99.36	97.92	98.25	98.00	99.21	100.00	98.57	91.67	96.30	96.70	97.03	94.19	97.37	91.94	91.75	97.30	96.55	95.65	92.75	89.66	96.18	94.44	92.91	94.94	97.97	92.34	-5.62	0.028156	0.546324
N	alternative_donor	SCN1B	chr19	+	chr19:35526916-35530020;chr19:35528259-35530020;chr19:35524644-35530020	chr19:35526051-35530020		chr19:35524644-35526050;chr19:35526051-35526915;chr19:35526916-35528258	chr19:35524643-35524644;chr19:35526050-35526051;chr19:35526915-35526916		1.23	0.00	5.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	2.86	0.00	0.00	2.08	0.00	0.00	4.26	0.00	1.75	0.83	2.50	0.00	3.17	1.79	3.70	0.00	2.86	0.00	4.95	0.00	0.61	0.61	0.081047	0.470724
N	alternative_acceptor	DNAJB12	chr10	-	chr10:74104886-74114522	chr10:74113167-74114522		chr10:74104886-74113166	chr10:74104885-74104886		0.00	9.09	2.63	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	3.23	0.00	3.85	0.00	0.00	0.00	0.00	0.00	0.00	NA	3.33	2.27	2.13	0.00	0.00	0.00	0.533021	0.815000
K	cassette	ACSS2	chr20	+	chr20:33513570-33514679	chr20:33513570-33513907;chr20:33514085-33514679		chr20:33513908-33514084			100.00	100.00	100.00	NA	92.31	NA	97.50	100.00	93.33	100.00	95.00	100.00	92.31	100.00	95.45	92.31	95.00	NA	NA	100.00	100.00	NA	100.00	NA	NA	96.67	100.00	100.00	100.00	100.00	100.00	97.62	90.00	94.74	100.00	100.00	94.91	100.00	5.09	0.144063	0.709176
K	cassette	DUS1L	chr17	-	chr17:80020850-80022001	chr17:80020850-80021343;chr17:80021395-80022001		chr17:80021344-80021394			100.00	100.00	100.00	87.50	87.50	NA	100.00	100.00	90.91	96.88	100.00	100.00	100.00	100.00	100.00	97.87	100.00	100.00	96.30	92.31	96.77	100.00	91.89	100.00	NA	NA	86.67	100.00	93.55	93.75	100.00	92.31	93.55	90.48	100.00	100.00	100.00	100.00	0.00	0.814272	0.937502
N	alternative_acceptor	DENND3	chr8	+	chr8:142202763-142204131	chr8:142202763-142203852		chr8:142203853-142204131	chr8:142204131-142204132		7.84	2.04	10.28	5.56	6.67	4.90	0.00	3.12	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	8.54	8.11	4.50	NA	5.88	10.00	3.51	6.82	8.75	10.53	NA	3.12	10.00	19.30	5.33	22.22	27.27	9.09	2.77	7.33	4.55	0.206694	0.669309
N	jcn_only_AA	TUBGCP2	chr10	-	chr10:135106743-135107065	chr10:135106755-135107065		chr10:135106743-135106754	chr10:135106742-135106743		0.00	0.00	0.00	NA	0.00	NA	3.39	0.00	0.00	2.56	2.86	0.00	1.64	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.35	0.82	0.00	-0.82	0.217987	0.663989
N	jcn_only_AA	SMCHD1	chr18	+	chr18:2796520-2800520;chr18:2796520-2799278	chr18:2796520-2802525		chr18:2799279-2800520;chr18:2800521-2802525	chr18:2800520-2800521;chr18:2802525-2802526		87.14	100.00	96.43	NA	100.00	NA	90.48	83.78	86.67	85.71	94.12	82.14	90.48	86.89	85.37	85.71	100.00	85.19	NA	87.80	NA	100.00	100.00	96.43	NA	88.89	96.30	94.74	100.00	96.43	91.49	89.55	100.00	95.00	90.00	92.31	95.24	87.47	-7.77	0.063482	0.663989
K	jcn_only_AD	FARSA,MYO1F	chr19	-	chr19:13039272-13039386	chr19:13039272-13039348		chr19:13039349-13039386	chr19:13039386-13039387		NA	100.00	100.00	100.00	100.00	NA	100.00	100.00	97.22	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	92.31	100.00	100.00	95.24	95.77	95.65	NA	100.00	97.50	100.00	100.00	100.00	NA	90.62	100.00	100.00	100.00	90.91	100.00	100.00	0.00	0.373901	0.657607
K	cassette	STK25	chr2	-	chr2:242437103-242438053	chr2:242437103-242437649;chr2:242437765-242438053		chr2:242437650-242437764			82.14	93.62	78.79	76.47	78.26	NA	100.00	93.75	96.55	95.65	97.22	100.00	97.83	94.44	94.29	100.00	91.18	100.00	89.66	84.21	93.94	66.67	84.09	71.43	85.71	76.47	80.00	89.66	88.64	88.89	100.00	86.49	86.67	88.46	84.85	81.82	91.64	88.98	-2.66	0.414124	0.727796
N	jcn_only_AA	SUCLG1	chr2	-	chr2:84660560-84668170;chr2:84660898-84668170	chr2:84663252-84668170		chr2:84660560-84660897;chr2:84660898-84663251	chr2:84660559-84660560;chr2:84660897-84660898		5.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
N	alternative_acceptor	RPL9	chr4	-	chr4:39456600-39458025;chr4:39456565-39458025	chr4:39456550-39458025		chr4:39456550-39456564;chr4:39456565-39456599	chr4:39456549-39456550;chr4:39456564-39456565		9.43	9.55	13.99	11.11	10.45	9.96	6.93	12.22	6.90	2.87	2.72	3.62	6.64	4.11	6.30	5.95	2.36	4.25	4.53	2.88	6.27	2.07	1.33	1.66	8.66	7.02	8.44	2.61	2.70	2.62	1.80	5.56	4.91	7.46	6.52	9.15	6.79	5.56	-1.22	0.743379	0.903518
N	alternative_last_exon	MBD4	chr3	-	chr3:129150422-129151940;chr3:129140647-129151940	chr3:129151450-129151940	chr3:129149787-129150421;chr3:129140210-129140646	chr3:129151019-129151449			100.00	97.73	100.00	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	96.30	100.00	100.00	NA	100.00	NA	94.12	100.00	100.00	100.00	100.00	NA	100.00	100.00	89.29	100.00	100.00	100.00	97.02	100.00	2.98	0.073673	0.281549
N	jcn_only_AA	VSIG4	chrX	-	chrX:65242009-65242682;chrX:65242530-65242682;chrX:65242459-65242682;chrX:65242252-65242682	chrX:65242343-65242682		chrX:65242009-65242251;chrX:65242252-65242342;chrX:65242343-65242458;chrX:65242459-65242529	chrX:65242008-65242009;chrX:65242251-65242252;chrX:65242342-65242343;chrX:65242458-65242459		63.64	67.11	60.94	55.80	61.70	45.10	81.50	71.11	60.38	74.93	78.47	78.84	82.39	79.02	48.98	78.24	80.30	79.24	53.88	60.66	37.50	55.09	66.85	69.23	55.74	57.80	69.23	65.98	73.70	69.62	39.02	35.82	55.20	65.96	70.36	70.77	61.42	62.15	0.73	0.608746	0.820499
K	intron_retention	ZNRD1	chr6	+	chr6:30029795-30030000				chr6:30029794-30029795;chr6:30030000-30030001		7.89	10.00	5.77	11.54	9.09	11.76	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	2.33	0.00	4.84	16.67	6.06	7.69	18.00	0.00	6.35	0.00	8.57	7.14	3.57	3.70	6.56	0.00	7.69	3.85	4.45	0.00	-4.45	0.729501	1.000000
N	coord_cassette	SEC11A	chr15	-	chr15:85214014-85259255	chr15:85214014-85230855;chr15:85231006-85234765;chr15:85234876-85259255		chr15:85230856-85231005;chr15:85234766-85234875			88.89	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.67	100.00	98.86	100.00	100.00	100.00	95.24	100.00	100.00	97.30	NA	90.32	100.00	100.00	100.00	100.00	86.36	97.37	100.00	98.15	100.00	93.75	100.00	95.16	-4.84	0.079905	0.643829
N	intron_retention		chr20	+	chr20:30754412-30754775				chr20:30754411-30754412;chr20:30754775-30754776		100.00	100.00	97.63	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.83	98.84	100.00	97.30	100.00	100.00	100.00	98.73	90.00	100.00	100.00	100.00	100.00	98.92	100.00	100.00	100.00	100.00	98.48	96.36	100.00	100.00	100.00	100.00	100.00	0.00	0.888179	1.000000
N	alternative_acceptor	GAK	chr4	-	chr4:860193-860743;chr4:860323-860743;chr4:860365-860743	chr4:860290-860743		chr4:860193-860289;chr4:860290-860322;chr4:860323-860364	chr4:860192-860193;chr4:860289-860290;chr4:860322-860323		35.90	48.15	29.55	50.00	60.00	69.23	34.48	42.86	38.46	59.38	51.52	63.16	36.67	47.73	42.11	50.00	55.81	66.67	NA	54.29	44.44	52.17	48.65	50.00	31.25	28.89	39.47	50.00	42.86	52.94	43.18	42.31	47.62	53.66	56.25	55.77	36.67	43.02	6.35	0.629859	0.857788
K	jcn_only_AA	GPR137	chr11	+	chr11:64056194-64056614	chr11:64056194-64056508		chr11:64056509-64056614	chr11:64056614-64056615		77.78	84.62	82.76	66.67	79.41	91.30	86.96	90.48	90.91	81.25	75.00	69.23	100.00	92.59	92.68	85.71	77.27	NA	81.03	80.00	80.00	NA	81.82	100.00	78.33	88.89	80.00	66.67	73.33	84.21	83.33	74.29	81.40	81.82	81.25	80.95	83.01	86.11	3.10	0.976429	0.991978
N	alternative_donor	NR2F6,VRK3	chr19	-	chr19:50480042-50482339	chr19:50480042-50480916		chr19:50480917-50482339	chr19:50482339-50482340		14.71	4.41	22.50	4.35	3.03	0.00	0.00	5.26	5.56	6.67	4.35	0.00	5.26	5.26	4.35	NA	4.55	6.67	0.00	10.34	2.86	10.00	11.11	26.67	4.55	25.00	14.29	NA	8.33	9.09	12.50	14.29	3.70	31.82	22.22	40.00	4.05	11.42	7.37	0.026626	0.317017
K	alternative_first_exon	MXD3,RAB24	chr5	-	chr5:176730322-176730411;chr5:176730322-176734781	chr5:176730322-176730407	chr5:176734782-176734965	chr5:176730408-176730707			91.67	81.25	86.61	NA	81.82	100.00	95.00	91.49	93.48	NA	100.00	100.00	85.71	90.00	93.55	NA	83.33	NA	95.24	93.02	93.33	NA	90.00	82.35	NA	91.53	83.16	100.00	95.24	91.89	94.55	88.61	85.71	78.57	100.00	87.23	85.71	91.60	5.89	0.287284	0.501338
N	alternative_acceptor	SUN2	chr22	-	chr22:39132386-39134177	chr22:39134052-39134177		chr22:39132386-39134051	chr22:39132385-39132386		2.60	6.25	3.08	NA	4.76	NA	0.00	1.64	0.00	0.00	0.00	2.78	0.81	1.56	3.77	0.00	0.00	3.45	9.09	3.66	3.57	3.23	1.85	8.00	NA	3.57	2.70	4.55	2.04	7.14	5.71	2.63	NA	4.08	4.88	10.20	3.53	3.08	-0.45	0.710746	0.890280
N	jcn_only_AA	SMG9	chr19	-	chr19:44238600-44241748;chr19:44238648-44241748	chr19:44240731-44241748		chr19:44238600-44238647;chr19:44238648-44240730	chr19:44238599-44238600;chr19:44238647-44238648		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	intron_retention	SLC11A1	chr2	+	chr2:219256219-219257703				chr2:219256218-219256219;chr2:219257703-219257704		5.77	7.89	8.41	8.33	6.25	0.00	0.85	3.42	4.03	3.03	3.79	0.00	5.47	2.80	7.69	4.07	3.95	0.00	7.41	9.04	6.94	7.14	8.51	0.00	12.50	13.36	11.05	11.24	9.16	3.12	6.82	9.52	2.94	13.13	7.62	6.90	6.44	6.29	-0.14	0.978952	1.000000
N	alternative_donor	UQCRC2	chr16	+	chr16:21987565-21991867	chr16:21990573-21991867		chr16:21987565-21990572	chr16:21987564-21987565		3.45	0.00	7.20	0.00	0.58	0.00	0.86	1.92	0.99	1.43	1.08	0.53	1.31	1.75	2.11	1.26	1.31	0.00	0.76	5.17	0.74	4.17	2.79	4.60	0.00	6.25	3.60	2.27	1.81	0.98	2.00	3.26	0.81	3.77	4.40	3.61	0.79	2.73	1.94	0.014194	0.251776
K	intron_retention	SNRNP200	chr2	-	chr2:96940894-96940994				chr2:96940893-96940894;chr2:96940994-96940995		1.47	2.46	2.94	0.00	0.75	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.26	5.36	1.98	0.00	0.00	0.00	0.00	0.00	1.27	0.00	1.10	0.00	10.13	8.04	5.37	2.94	1.11	0.00	1.13	0.73	-0.39	0.778796	1.000000
N	cassette	ITGB7	chr12	-	chr12:53586323-53587491;chr12:53586695-53587491	chr12:53586323-53586923,chr12:53586695-53586923;chr12:53587148-53587491		chr12:53586924-53587147			98.18	100.00	NA	100.00	97.06	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	90.32	100.00	93.75	98.59	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.662350	0.876335
K	intron_retention	PITRM1	chr10	-	chr10:3180317-3180426				chr10:3180316-3180317;chr10:3180426-3180427		0.00	0.00	0.00	1.08	2.08	0.85	0.00	0.00	0.00	4.17	8.00	3.57	2.86	4.35	0.00	4.84	0.00	4.88	5.36	0.00	2.44	4.76	0.00	2.17	10.34	0.00	3.45	0.00	7.69	2.08	2.56	1.89	0.00	1.59	0.00	3.57	1.43	0.00	-1.43	0.437601	1.000000
N	jcn_only_AD	FAAP20	chr1	-	chr1:2125573-2126272;chr1:2125573-2126126	chr1:2125573-2126476		chr1:2126127-2126272;chr1:2126273-2126476	chr1:2126272-2126273;chr1:2126476-2126477		0.00	0.00	0.00	0.00	0.00	0.00	11.76	NA	NA	NA	NA	NA	0.00	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
K	intron_retention	PPM1G	chr2	-	chr2:27607635-27607841				chr2:27607634-27607635;chr2:27607841-27607842		100.00	100.00	100.00	100.00	95.83	NA	100.00	100.00	90.91	94.12	100.00	94.74	100.00	100.00	95.74	95.83	98.41	100.00	100.00	95.65	94.44	96.67	100.00	100.00	100.00	100.00	96.97	97.06	92.11	95.45	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	0.00	0.594508	1.000000
K	intron_retention	C16orf13	chr16	-	chr16:684645-684718				chr16:684644-684645;chr16:684718-684719		0.00	1.27	0.00	2.70	4.35	5.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	1.33	0.00	1.82	0.00	1.66	NA	2.56	0.00	1.33	3.77	15.38	0.00	2.87	0.00	0.00	0.00	1.46	0.00	-1.46	0.840770	1.000000
K	intron_retention	PRKAG2	chr7	-	chr7:151254319-151257609				chr7:151254318-151254319;chr7:151257609-151257610		8.05	11.63	14.04	8.77	12.73	7.59	2.22	0.00	0.00	0.89	3.19	0.00	0.00	2.33	1.92	5.10	3.77	0.00	0.00	7.50	0.00	3.26	4.11	6.67	4.76	1.28	3.03	1.43	1.85	4.76	3.37	2.13	4.55	2.96	3.51	3.12	3.38	2.85	-0.53	0.851232	1.000000
K	jcn_only_AD	SPG7	chr16	+	chr16:89620972-89623294	chr16:89622494-89623294		chr16:89620972-89622493	chr16:89620971-89620972		0.00	11.36	5.13	0.00	3.70	9.09	4.00	NA	0.00	NA	0.00	NA	0.00	NA	5.00	0.00	13.33	NA	7.69	7.14	13.79	5.56	4.65	5.26	35.29	25.00	11.11	11.76	11.54	NA	0.00	5.56	0.00	6.25	6.67	3.33	5.85	3.57	-2.28	0.839019	0.926053
K	intron_retention		chr22	+	chr22:20938713-20939141				chr22:20938712-20938713;chr22:20939141-20939142		2.04	9.09	4.23	0.00	2.17	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.99	0.00	1.04	0.00	0.00	3.26	0.00	1.54	5.33	2.74	0.00	3.51	1.85	0.00	1.82	1.25	3.03	2.14	6.25	1.02	2.60	1.89	0.00	2.54	2.54	0.542040	1.000000
N	cassette	DECR1	chr8	+	chr8:91013790-91031136;chr8:91013790-91031140	chr8:91013790-91029529;chr8:91029555-91031140,chr8:91029555-91031136		chr8:91029530-91029554			92.31	100.00	87.50	NA	89.47	NA	91.04	87.62	84.34	93.55	91.80	91.11	89.29	93.02	80.95	88.24	92.11	94.44	NA	90.57	100.00	94.12	91.18	92.00	NA	84.81	82.05	100.00	91.18	91.67	85.37	81.25	100.00	90.91	89.29	88.46	95.52	89.09	-6.43	0.119627	0.709176
K	intron_retention	RPS25	chr11	-	chr11:118888256-118888667				chr11:118888255-118888256;chr11:118888667-118888668		2.68	1.38	2.98	2.26	1.59	1.72	0.19	0.59	0.30	0.49	0.50	0.24	0.22	0.00	0.74	0.46	0.50	0.26	0.85	4.44	1.50	3.38	2.02	2.74	1.28	2.13	2.29	1.55	1.73	1.29	6.43	3.89	1.55	1.88	1.66	1.32	1.06	2.41	1.34	0.297988	1.000000
N	alternative_donor	WTAP	chr6	+	chr6:160173336-160174491;chr6:160169402-160174491;chr6:160171043-160174491;chr6:160169967-160174491	chr6:160172747-160174491		chr6:160169402-160169966;chr6:160169967-160171042;chr6:160171043-160172746;chr6:160172747-160173335	chr6:160169401-160169402;chr6:160169966-160169967;chr6:160171042-160171043;chr6:160172746-160172747		5.01	18.57	6.26	20.40	18.25	24.03	5.80	8.51	11.91	7.53	12.30	11.80	7.35	7.65	6.36	6.97	11.54	9.47	21.15	3.02	15.18	6.68	7.37	13.96	NA	6.29	12.06	9.46	10.06	13.21	15.60	6.22	22.67	6.17	8.55	8.09	18.57	6.97	-11.60	0.111025	0.520337
N	alternative_donor	WDFY2	chr13	+	chr13:52325552-52329493;chr13:52328534-52329493	chr13:52327056-52329493		chr13:52325552-52327055;chr13:52327056-52328533	chr13:52325551-52325552;chr13:52327055-52327056		0.00	0.00	3.70	NA	NA	NA	0.00	2.56	0.00	NA	0.00	NA	4.00	2.94	4.55	NA	0.00	NA	NA	0.00	0.00	NA	NA	NA	0.00	5.56	3.45	NA	NA	NA	0.00	0.00	NA	0.00	NA	NA	0.00	1.28	1.28	0.555168	0.786269
K	cassette	DPH3	chr3	-	chr3:16302337-16306275	chr3:16302337-16305661;chr3:16305737-16306275		chr3:16305662-16305736			27.27	NA	38.64	36.00	50.00	46.15	55.17	46.00	52.73	44.83	53.49	41.67	56.52	43.86	62.79	44.44	44.83	41.03	50.00	37.14	62.50	38.71	50.00	41.46	NA	61.90	55.88	68.97	64.00	64.44	42.86	38.71	36.36	42.31	56.00	54.76	52.59	43.36	-9.23	0.362576	0.709176
K	intron_retention		chr16	+	chr16:67262318-67262397				chr16:67262317-67262318;chr16:67262397-67262398		0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	2.56	0.78	0.00	0.85	1.23	5.77	2.44	0.00	1.59	1.22	0.00	2.06	4.80	2.36	0.00	0.00	1.21	0.74	1.03	0.29	0.928707	1.000000
N	coord_cassette	FASTK	chr7	-	chr7:150773920-150774396	chr7:150773920-150773999;chr7:150774115-150774187;chr7:150774324-150774396		chr7:150774000-150774114;chr7:150774188-150774323			100.00	93.38	91.18	94.92	88.37	94.03	100.00	NA	100.00	92.31	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	93.08	100.00	97.40	100.00	87.50	100.00	89.85	100.00	100.00	100.00	94.29	100.00	100.00	93.55	91.10	91.30	91.18	97.22	93.23	100.00	6.77	0.029354	0.643829
K	cassette	GDI2	chr10	-	chr10:5808259-5810175	chr10:5808259-5808456;chr10:5808602-5810175		chr10:5808457-5808601			99.43	100.00	100.00	100.00	100.00	100.00	99.02	97.67	99.03	96.45	99.04	98.02	99.05	98.45	98.99	98.69	98.43	98.40	100.00	97.97	98.89	98.28	98.77	98.68	100.00	99.30	99.44	100.00	98.41	99.24	96.47	98.46	92.59	98.97	98.60	97.72	99.53	98.21	-1.31	0.862799	0.951806
N	alternative_acceptor	ZNF276	chr16	+	chr16:89804314-89805599;chr16:89804314-89804405;chr16:89804314-89804383	chr16:89804314-89804414		chr16:89804384-89804405;chr16:89804406-89804414;chr16:89804415-89805599	chr16:89804405-89804406;chr16:89804414-89804415;chr16:89805599-89805600		0.00	0.00	4.00	0.00	0.00	4.17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6.25	4.76	0.00	0.00	0.00	0.00	7.14	5.56	4.55	0.00	0.00	0.00	5.56	3.33	5.00	8.33	0.00	0.00	5.62	5.16	-0.46	0.773416	0.915715
K	alternative_donor	RP11-574K11.31	chr10	-	chr10:75562535-75562766	chr10:75562535-75562729		chr10:75562730-75562766	chr10:75562766-75562767		97.83	88.89	80.81	85.00	87.50	88.24	93.55	88.57	84.48	87.10	89.74	85.71	87.04	87.18	80.00	100.00	94.12	84.91	80.00	90.91	80.43	90.00	91.43	88.16	NA	76.60	82.83	89.19	87.80	86.05	76.92	83.33	100.00	86.36	81.48	85.71	88.89	87.88	-1.02	0.472492	0.730703
K	cassette	YIPF1	chr1	-	chr1:54317944-54325728	chr1:54317944-54320673;chr1:54320725-54325728		chr1:54320674-54320724			55.81	58.14	69.77	100.00	57.69	68.42	67.74	59.26	56.76	69.23	46.67	58.33	58.06	78.57	71.88	80.00	68.42	70.00	64.10	61.76	58.06	NA	55.00	76.92	62.50	78.79	67.14	81.82	58.82	55.00	69.57	57.45	47.50	68.75	61.90	72.00	60.32	65.66	5.34	0.158663	0.709176
K	alternative_acceptor	AC137934.1,PPP4C	chr16	+	chr16:30087797-30092579	chr16:30087797-30092520		chr16:30092521-30092579	chr16:30092579-30092580		4.71	0.00	3.61	0.00	0.95	0.00	0.00	0.95	0.00	0.76	1.14	0.95	1.30	1.71	0.00	1.22	0.59	0.00	2.04	2.13	3.45	2.70	2.48	0.00	1.64	2.27	3.28	2.70	1.41	1.37	5.38	5.56	2.70	1.83	3.96	3.54	1.47	2.20	0.73	0.098545	0.598353
N	alternative_donor	RASSF4	chr10	+	chr10:45486277-45486395;chr10:45485534-45486395	chr10:45485170-45486395		chr10:45485170-45485533;chr10:45485534-45486276	chr10:45485169-45485170;chr10:45485533-45485534		98.14	100.00	95.83	100.00	100.00	100.00	100.00	98.92	99.01	98.41	100.00	96.72	99.28	98.80	97.83	98.21	100.00	95.59	94.74	97.46	98.56	97.30	97.22	94.12	100.00	98.06	96.09	97.00	97.87	98.01	100.00	99.00	100.00	97.73	98.57	97.92	100.00	98.47	-1.53	0.652233	0.843350
N	jcn_only_AA	DDX56	chr7	-	chr7:44609498-44609613	chr7:44609503-44609613		chr7:44609498-44609502	chr7:44609497-44609498		100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	alternative_acceptor	DYNC1I2	chr2	+	chr2:172602438-172604288	chr2:172602438-172604285		chr2:172604286-172604288	chr2:172604288-172604289		84.62	80.00	91.18	73.33	81.48	82.35	84.29	87.23	91.84	92.86	87.63	92.42	87.50	85.19	83.02	90.91	88.78	86.44	87.50	84.00	88.64	83.87	88.10	77.78	NA	89.13	90.62	79.59	81.03	85.00	81.82	72.41	75.00	82.50	82.50	87.23	84.29	84.91	0.61	0.383975	0.709013
K	intron_retention	CNOT11	chr2	+	chr2:101885599-101885677				chr2:101885598-101885599;chr2:101885677-101885678		26.67	0.00	11.90	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	6.06	1.89	5.88	NA	6.67	16.67	13.04	9.38	12.50	NA	5.26	20.00	7.14	3.70	10.00	16.67	17.39	18.18	13.33	7.69	13.33	0.00	5.96	5.96	0.783833	1.000000
K	intron_retention	RELT	chr11	+	chr11:73106331-73106488				chr11:73106330-73106331;chr11:73106488-73106489		0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	14.29	0.00	0.00	0.00	0.00	NA	3.33	2.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	alternative_donor	YBX3	chr12	-	chr12:10854734-10854857;chr12:10854734-10855010;chr12:10854734-10856649	chr12:10854734-10856658		chr12:10854858-10855010;chr12:10855011-10856649;chr12:10856650-10856658	chr12:10855010-10855011;chr12:10856649-10856650;chr12:10856658-10856659		0.00	0.00	12.16	11.54	12.00	20.00	9.09	10.71	10.61	12.90	7.04	14.95	10.91	14.29	11.76	10.85	9.86	9.41	8.33	15.79	16.67	10.42	11.90	13.64	NA	5.56	11.84	14.06	5.13	14.29	21.05	10.00	7.69	15.69	14.29	11.76	8.33	12.50	4.17	0.296777	0.650093
K	mutually_exclusive	U2AF1,U2AF1L5	chr21	-	chr21:44515854-44520562,chr21:44520630-44524424;chr21:44515854-44520686,chr21:44520725-44524424	chr21:44515854-44521475,chr21:44521543-44524424	chr21:44520563-44520629;chr21:44520687-44520724	chr21:44521476-44521542			22.78	32.19	23.23	8.15	13.94	5.81	24.42	8.16	18.97	11.98	21.64	13.59	31.20	6.90	13.16	11.57	20.45	9.43	25.30	17.24	25.00	12.42	20.42	8.33	33.33	20.41	28.75	11.76	18.96	7.24	28.57	30.12	32.91	15.03	19.14	9.77	31.70	18.82	-12.87	0.013099	0.078591
K	coord_cassette	TMEM147	chr19	+	chr19:36037488-36038020	chr19:36037488-36037573;chr19:36037711-36037846;chr19:36037932-36038020		chr19:36037574-36037710;chr19:36037847-36037931			97.67	100.00	97.50	98.04	99.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	99.12	100.00	100.00	99.16	100.00	100.00	98.62	100.00	98.53	98.11	97.44	100.00	100.00	100.00	100.00	97.73	100.00	100.00	100.00	96.88	97.84	94.44	97.59	97.14	99.56	100.00	0.44	0.530303	0.733074
K	intron_retention	MACF1	chr1	+	chr1:39950403-39951209				chr1:39950402-39950403;chr1:39951209-39951210		1.74	0.00	5.13	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.85	1.79	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	3.45	2.27	4.23	0.00	5.62	3.09	0.00	2.04	1.68	3.64	3.95	0.00	3.17	8.33	6.37	0.00	1.57	1.57	0.360611	1.000000
N	jcn_only_AD	RPL35A	chr3	+	chr3:197677474-197677806;chr3:197677093-197677806;chr3:197677631-197677806	chr3:197677171-197677806		chr3:197677093-197677170;chr3:197677171-197677473;chr3:197677474-197677630	chr3:197677092-197677093;chr3:197677170-197677171;chr3:197677473-197677474		11.90	5.48	13.90	16.95	11.66	12.50	4.78	10.87	12.07	10.45	8.63	9.48	4.27	9.52	5.31	12.24	12.00	5.00	16.45	17.65	14.52	17.80	12.37	16.07	7.88	17.65	13.20	11.11	3.85	7.81	32.31	21.31	16.85	18.55	14.05	14.18	6.68	14.77	8.09	0.112359	0.646283
K	intron_retention	POLR2A	chr17	+	chr17:7416243-7416339				chr17:7416242-7416243;chr17:7416339-7416340		7.50	0.00	5.22	NA	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	4.55	0.00	0.00	0.00	NA	7.14	0.00	0.00	3.61	4.88	0.00	2.67	5.97	0.00	0.00	4.17	10.00	10.53	NA	8.00	5.06	6.82	0.00	4.90	4.90	0.074747	1.000000
K	intron_retention	CDK2AP2	chr11	-	chr11:67275161-67275471				chr11:67275160-67275161;chr11:67275471-67275472		3.57	3.75	12.90	12.50	9.68	11.11	6.00	17.65	17.39	11.11	6.67	9.09	5.50	14.29	16.67	4.35	4.76	15.79	6.67	0.00	5.71	11.76	9.80	16.67	0.00	16.67	15.62	13.33	11.90	11.54	5.26	9.30	6.12	11.11	12.90	12.82	5.75	9.77	4.02	0.798110	1.000000
N	alternative_donor	SMCHD1	chr18	+	chr18:2800739-2802525;chr18:2799382-2802525;chr18:2800735-2802525	chr18:2796520-2802525		chr18:2796520-2799381;chr18:2799382-2800734;chr18:2800735-2800738	chr18:2796519-2796520;chr18:2799381-2799382;chr18:2800734-2800735		98.39	100.00	90.00	NA	100.00	NA	100.00	96.88	97.50	100.00	100.00	100.00	100.00	98.15	97.22	100.00	100.00	100.00	NA	97.30	NA	100.00	100.00	100.00	NA	96.39	96.30	100.00	100.00	100.00	100.00	96.77	100.00	90.48	NA	97.30	100.00	97.72	-2.28	0.009681	0.213126
N	cassette	APRT	chr16	-	chr16:88876557-88877957;chr16:88876557-88877711	chr16:88876557-88876830;chr16:88876965-88877711,chr16:88876965-88877957		chr16:88876831-88876964			100.00	98.60	100.00	94.52	95.59	95.88	99.01	100.00	100.00	97.84	98.97	100.00	100.00	100.00	97.47	98.82	100.00	100.00	97.54	100.00	95.37	95.92	94.23	95.56	96.53	NA	100.00	96.36	97.14	97.22	NA	93.75	96.45	97.10	97.09	98.04	98.07	100.00	1.93	0.019235	0.375693
K	alternative_last_exon	BBIP1	chr10	-	chr10:112660285-112661295	chr10:112660881-112661295	chr10:112658488-112660284	chr10:112660784-112660880			0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	7.14	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.535374
K	intron_retention	ASCC2	chr22	-	chr22:30185174-30186457				chr22:30185173-30185174;chr22:30186457-30186458		2.22	2.27	1.64	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.74	1.85	2.83	0.00	2.15	3.70	2.06	0.00	4.76	0.00	0.00	0.00	5.77	5.21	3.33	3.03	1.52	0.00	1.90	0.93	-0.97	0.860122	1.000000
N	alternative_donor	AIP	chr11	+	chr11:67257921-67258258	chr11:67257929-67258258		chr11:67257921-67257928	chr11:67257920-67257921		100.00	100.00	93.48	95.00	100.00	100.00	100.00	96.55	94.23	91.67	96.77	100.00	95.74	100.00	98.15	100.00	100.00	NA	100.00	100.00	97.75	100.00	100.00	NA	100.00	93.10	93.10	100.00	95.00	100.00	94.29	96.72	98.11	100.00	96.67	100.00	100.00	98.28	-1.72	0.293369	0.650093
N	cassette	NAGK	chr2	+	chr2:71302773-71304699;chr2:71300725-71304687	chr2:71300725-71303733,chr2:71302773-71303733;chr2:71303832-71304687,chr2:71303832-71304699		chr2:71303734-71303831			98.03	98.88	98.61	98.68	98.67	99.25	98.84	98.62	100.00	100.00	100.00	95.00	98.33	98.88	98.02	98.46	100.00	97.22	98.25	98.45	98.25	100.00	98.49	97.83	96.62	97.68	97.87	97.17	99.01	99.04	96.55	98.65	98.71	98.08	98.81	97.62	98.52	98.24	-0.28	0.638898	0.868138
N	alternative_donor	PTOV1	chr19	+	chr19:50361911-50363242	chr19:50362434-50363242		chr19:50361911-50362433	chr19:50361910-50361911		10.67	5.29	16.05	3.33	2.16	1.10	1.92	5.00	5.26	0.00	1.89	0.00	2.63	3.12	9.68	2.86	2.13	0.00	2.53	6.38	2.70	6.67	11.39	9.38	2.03	12.50	11.76	9.09	8.45	4.08	10.42	16.67	1.79	16.67	13.24	14.58	2.28	8.40	6.12	0.015267	0.256447
K	intron_retention		chr2	-	chr2:74755617-74755877				chr2:74755616-74755617;chr2:74755877-74755878		10.14	14.29	20.00	9.09	9.38	0.00	1.96	0.00	2.33	3.08	1.23	0.00	3.03	3.70	6.82	3.19	3.95	0.00	14.81	12.86	9.09	16.67	18.75	28.26	10.34	10.53	14.29	5.08	11.11	10.34	15.56	21.05	13.79	16.42	21.67	14.63	12.06	10.34	-1.73	0.870970	1.000000
N	jcn_only_AA	UBL7	chr15	-	chr15:74740929-74741526;chr15:74740900-74741526	chr15:74740942-74741526		chr15:74740900-74740928;chr15:74740929-74740941	chr15:74740899-74740900;chr15:74740928-74740929		100.00	88.14	84.00	96.55	90.91	93.02	92.31	92.31	91.89	87.88	90.38	93.75	87.10	90.48	97.56	90.00	90.16	90.32	83.51	93.75	89.19	70.00	89.36	88.89	89.36	93.55	91.30	100.00	90.48	88.24	91.11	92.73	86.09	100.00	89.47	90.70	87.62	92.93	5.31	0.011169	0.486024
N	jcn_only_AA	RGS2	chr1	+	chr1:192779398-192779499	chr1:192779398-192779485		chr1:192779486-192779499	chr1:192779499-192779500		2.99	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	NA	0.00	0.00	0.00	0.00	6.06	1.52	0.00	0.00	0.00	0.00	0.00	1.50	1.50	0.216298	0.663989
N	alternative_donor	TRPM2	chr21	+	chr21:45773749-45774530	chr21:45774380-45774530		chr21:45773749-45774379	chr21:45773748-45773749		2.86	0.00	5.13	0.00	0.00	0.00	0.00	3.23	11.11	12.50	0.00	10.53	0.00	3.51	0.00	3.03	0.00	7.69	0.00	5.26	0.00	5.88	0.00	6.25	0.00	0.00	6.25	8.33	0.00	6.67	5.56	0.00	0.00	0.00	0.00	5.63	0.00	3.37	3.37	0.008770	0.211749
N	alternative_last_exon	ERICH1	chr8	-	chr8:614677-618597;chr8:565285-618597	chr8:590835-618597	chr8:614200-614676;chr8:564746-565284	chr8:590583-590834			10.81	15.79	7.14	0.00	0.00	0.00	0.00	5.88	11.11	0.00	0.00	6.45	0.00	0.00	5.56	0.00	0.00	5.88	5.26	0.00	3.57	0.00	0.00	0.00	16.67	4.17	14.81	0.00	6.25	7.41	0.00	5.88	5.00	0.00	0.00	5.00	5.13	2.08	-3.04	0.330698	0.527981
K	alternative_donor	ARIH1	chr15	+	chr15:72873219-72874415	chr15:72873333-72874415		chr15:72873219-72873332	chr15:72873218-72873219		100.00	100.00	94.12	NA	100.00	100.00	92.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	93.10	100.00	92.00	NA	100.00	100.00	100.00	95.24	90.91	NA	95.24	100.00	100.00	100.00	95.00	96.67	100.00	100.00	95.00	95.45	91.49	100.00	98.48	-1.52	0.949444	0.984606
K	alternative_acceptor	PHKG2	chr16	+	chr16:30767594-30767687	chr16:30767594-30767675		chr16:30767676-30767687	chr16:30767687-30767688		9.52	10.87	11.63	NA	14.81	NA	0.00	0.00	4.35	6.25	3.85	NA	6.06	9.09	5.00	10.00	3.23	NA	15.15	9.09	17.95	NA	9.09	NA	25.00	15.38	17.07	NA	15.79	NA	12.50	13.04	17.86	25.00	15.79	NA	13.01	9.30	-3.71	0.463037	0.765873
N	alternative_donor	SYNCRIP	chr6	-	chr6:86322642-86324736;chr6:86322642-86324698	chr6:86322642-86324556		chr6:86324557-86324698;chr6:86324699-86324736	chr6:86324698-86324699;chr6:86324736-86324737		28.95	18.75	19.23	21.74	23.40	10.81	15.15	22.58	20.45	17.42	16.82	20.31	13.25	20.59	22.50	23.74	20.35	20.37	14.29	30.56	15.56	27.27	24.32	26.32	4.17	20.83	17.78	24.64	18.46	18.18	36.36	31.82	14.58	29.41	27.27	31.65	14.43	25.77	11.33	0.002615	0.124802
K	cassette	DDX39A	chr19	-	chr19:14521147-14521800	chr19:14521147-14521359;chr19:14521418-14521800		chr19:14521360-14521417			12.20	2.94	12.82	10.00	7.94	11.11	6.00	0.00	5.00	4.05	2.78	2.63	5.80	5.00	11.11	3.88	3.57	0.00	6.12	5.26	8.33	8.00	4.44	6.67	0.00	21.43	16.13	8.57	3.28	12.82	18.60	15.09	7.27	10.00	10.26	12.31	5.90	8.73	2.83	0.164330	0.709176
N	jcn_only_AA	RP4-635E18.9,TARDBP	chr1	+	chr1:43915843-43916509	chr1:43915843-43916007		chr1:43916008-43916509	chr1:43916509-43916510		100.00	100.00	100.00	100.00	100.00	NA	NA	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	NA	100.00	94.74	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
K	cassette	TIAL1	chr10	-	chr10:121336263-121336591	chr10:121336263-121336358;chr10:121336418-121336591		chr10:121336359-121336417			8.33	20.00	6.12	27.27	20.69	8.33	0.00	0.00	0.00	0.00	0.00	0.00	2.70	0.00	0.00	0.00	1.85	0.00	11.11	0.00	6.25	6.67	9.76	8.33	0.00	4.17	5.17	11.11	7.14	3.33	8.82	21.57	14.29	16.67	8.33	8.11	6.90	2.08	-4.82	0.279142	0.709176
N	jcn_only_AA	PRMT2	chr21	+	chr21:48055676-48056355;chr21:48055676-48056141;chr21:48055676-48056350	chr21:48055676-48056807					46.43	25.93	27.50	25.00	35.29	35.71	24.14	15.00	16.95	18.18	21.25	18.75	16.98	13.58	25.33	14.29	10.39	12.20	46.15	57.69	55.17	27.27	31.71	11.76	29.41	25.58	22.58	33.33	14.29	28.21	55.56	41.67	62.50	34.62	22.22	21.57	27.67	36.00	8.33	0.894782	0.963638
K	intron_retention	PABPC4	chr1	-	chr1:40029595-40030142				chr1:40029594-40029595;chr1:40030142-40030143		13.04	14.00	12.00	11.11	15.00	NA	14.29	NA	14.29	17.24	15.38	22.22	15.69	NA	12.50	17.39	23.08	16.67	6.67	26.32	14.29	10.20	15.38	16.28	0.00	21.74	10.00	27.59	14.00	27.78	14.00	14.81	11.54	7.45	16.95	14.14	12.77	17.87	5.10	0.493292	1.000000
N	alternative_donor	TNRC18	chr7	-	chr7:5353495-5354614	chr7:5353495-5353994		chr7:5353995-5354614	chr7:5354614-5354615		2.78	14.29	1.82	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	40.00	0.00	NA	NA	2.13	NA	15.62	0.00	3.57	0.00	5.26	NA	0.00	0.00	30.00	0.00	2.22	0.00	14.95	0.00	-14.95	0.056198	0.418548
K	alternative_acceptor	NELFE	chr6	-	chr6:31922580-31922835;chr6:31922670-31922835	chr6:31922655-31922835		chr6:31922580-31922654;chr6:31922655-31922669	chr6:31922579-31922580;chr6:31922654-31922655		22.92	21.62	16.28	28.57	14.63	23.81	11.43	38.10	38.10	14.81	25.00	25.00	23.26	22.22	23.81	23.08	25.58	31.82	14.71	16.67	20.45	36.36	15.79	18.18	20.83	19.23	16.67	15.38	19.44	11.54	25.00	18.75	13.51	15.38	18.18	17.65	17.77	22.57	4.80	0.112767	0.605363
N	cassette	DRAM1	chr12	+	chr12:102295212-102314993;chr12:102295212-102313886;chr12:102295212-102405590	chr12:102295212-102307951;chr12:102308011-102314993,chr12:102308011-102313886,chr12:102308011-102405590		chr12:102307952-102308010			77.78	50.00	72.87	75.38	72.73	75.27	77.78	75.66	74.00	77.49	72.73	77.57	68.83	71.07	75.00	65.62	65.12	68.01	78.26	75.71	84.85	78.82	70.31	78.34	NA	71.57	71.55	78.57	80.00	80.68	80.95	77.88	83.33	75.00	76.00	74.50	77.78	75.69	-2.09	0.560821	0.824117
K	intron_retention		chr11	-	chr11:66052255-66052343				chr11:66052254-66052255;chr11:66052343-66052344		5.00	4.24	0.00	2.99	3.37	6.19	0.00	0.00	0.00	0.00	0.00	0.00	3.08	0.00	3.45	1.82	1.75	0.00	3.51	0.00	0.00	3.03	1.89	0.00	0.73	0.00	0.00	0.00	5.56	0.00	8.33	6.25	3.42	0.00	2.38	0.00	3.25	0.00	-3.25	0.920206	1.000000
N	jcn_only_AA	PITPNM1	chr11	-	chr11:67261024-67261158	chr11:67261065-67261158		chr11:67261024-67261064	chr11:67261023-67261024		95.24	100.00	89.86	NA	96.67	NA	100.00	93.94	100.00	90.00	100.00	NA	100.00	95.65	100.00	100.00	86.96	NA	90.48	94.12	97.92	NA	96.43	NA	100.00	94.12	98.08	NA	96.67	NA	97.14	95.31	92.31	100.00	95.00	100.00	100.00	94.68	-5.32	0.313375	0.663989
N	jcn_only_AD	TCN2	chr22	+	chr22:31009241-31010335;chr22:31009030-31010335	chr22:31008949-31010335		chr22:31008949-31009029;chr22:31009030-31009240	chr22:31008948-31008949;chr22:31009029-31009030		13.64	0.00	0.00	NA	0.00	NA	7.95	5.99	1.23	7.81	6.10	5.49	4.00	6.12	4.62	2.86	3.12	4.76	8.33	9.76	0.00	0.00	6.06	4.69	0.00	2.75	2.22	1.89	2.94	4.62	9.09	9.76	0.00	5.13	6.67	5.21	2.00	7.61	5.61	0.072319	0.605417
K	intron_retention	DHRS1	chr14	-	chr14:24760426-24760761				chr14:24760425-24760426;chr14:24760761-24760762		14.29	12.50	16.67	0.00	4.76	NA	0.00	0.00	10.00	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	9.52	8.33	0.00	NA	14.29	0.00	12.50	20.00	28.57	NA	5.88	0.00	13.33	15.38	5.00	0.00	16.67	0.00	7.26	10.83	3.57	0.383760	1.000000
N	alternative_donor	LRP1	chr12	+	chr12:57598533-57598891	chr12:57598585-57598891		chr12:57598533-57598584	chr12:57598532-57598533		3.42	5.36	4.85	NA	0.00	NA	0.40	0.76	0.00	0.00	0.38	0.00	0.63	1.16	2.17	0.00	0.59	0.00	8.00	5.48	0.00	0.00	2.73	0.00	7.02	3.85	4.04	0.00	2.10	0.00	5.88	6.67	10.00	0.00	1.67	0.00	6.19	3.63	-2.55	0.353527	0.650093
K	intron_retention		chr2	+	chr2:74782581-74782701				chr2:74782580-74782581;chr2:74782701-74782702		12.50	3.92	13.11	NA	6.82	NA	2.90	5.56	4.26	6.25	4.35	NA	5.26	7.69	7.89	8.00	6.56	NA	0.00	9.52	10.34	NA	12.82	NA	18.18	7.27	11.27	0.00	8.33	NA	5.26	9.09	7.69	10.00	11.11	0.00	4.59	7.48	2.89	0.898093	1.000000
N	cassette	PHF11	chr13	+	chr13:50100595-50102646	chr13:50100595-50101341;chr13:50101491-50102646		chr13:50101342-50101490			2.03	0.00	0.00	0.00	0.00	1.09	0.00	0.88	1.15	0.00	0.00	0.76	0.00	0.00	1.98	1.41	0.00	0.80	0.00	3.25	0.00	0.00	2.00	1.80	0.00	3.82	1.52	3.06	0.00	1.38	2.88	5.05	0.00	4.11	2.94	3.41	0.00	2.46	2.46	0.015954	0.372211
N	jcn_only_AA		chr8	+	chr8:98078439-98118133;chr8:98078439-98120759	chr8:98078439-98155247		chr8:98118134-98120759;chr8:98120760-98155247	chr8:98120759-98120760;chr8:98155247-98155248		100.00	100.00	100.00	100.00	98.33	94.44	100.00	97.62	100.00	100.00	100.00	100.00	98.51	93.55	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.55	100.00	100.00	100.00	100.00	100.00	100.00	98.36	100.00	100.00	0.00	0.310939	0.663989
K	intron_retention		chrX	+	chrX:153608380-153608593				chrX:153608379-153608380;chrX:153608593-153608594		10.34	4.17	13.04	5.71	5.77	NA	0.00	3.33	2.70	1.89	0.00	0.00	1.96	0.00	3.33	1.79	1.12	0.00	0.00	12.90	8.33	9.86	6.67	7.27	NA	10.26	17.14	5.80	3.39	4.44	28.57	16.67	16.67	7.92	1.64	4.76	1.96	10.30	8.34	0.732700	1.000000
N	alternative_donor	ZNF787	chr19	-	chr19:56614597-56632540	chr19:56614597-56630505		chr19:56630506-56632540	chr19:56632540-56632541		0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.650093
K	intron_retention		chr15	-	chr15:90348695-90349200				chr15:90348694-90348695;chr15:90349200-90349201		1.98	0.00	4.68	9.52	9.68	9.09	0.00	0.26	0.00	0.95	0.50	0.68	0.83	0.58	0.64	2.12	2.36	3.26	NA	1.71	3.08	12.94	9.22	12.70	0.00	1.71	3.83	5.63	5.26	6.00	1.35	2.35	0.00	11.24	10.75	13.40	0.00	1.53	1.53	0.024890	1.000000
K	alternative_donor	RNF149,WDR33	chr2	-	chr2:101888207-101889588	chr2:101888207-101889303		chr2:101889304-101889588	chr2:101889588-101889589		14.95	1.75	16.44	4.17	3.33	0.00	30.00	35.29	NA	NA	NA	42.86	46.15	58.82	50.00	NA	NA	58.82	2.63	17.65	7.50	14.29	8.11	16.13	0.00	26.15	11.97	23.81	21.05	23.08	23.64	17.57	7.69	20.69	22.58	24.62	5.16	24.89	19.73	0.178740	0.563271
N	alternative_acceptor	PLEKHM2	chr1	+	chr1:16047884-16051811	chr1:16047884-16049704		chr1:16049705-16051811	chr1:16051811-16051812		7.50	15.00	9.62	NA	18.75	NA	0.98	0.98	0.00	0.78	0.84	0.00	1.23	1.11	3.57	0.85	0.83	0.90	NA	6.82	NA	8.77	7.45	8.93	23.91	7.50	4.76	13.64	8.96	20.51	4.65	7.89	31.25	8.33	9.72	9.01	15.00	5.74	-9.27	0.184453	0.660713
N	cassette	PGS1	chr17	+	chr17:76396937-76411032;chr17:76396937-76410959	chr17:76396937-76399648;chr17:76400171-76411032,chr17:76400171-76410959		chr17:76399649-76400170			100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	98.51	90.91	100.00	100.00	98.75	100.00	100.00	0.00	0.391002	0.709410
N	alternative_acceptor	STK11	chr19	+	chr19:1221340-1221947;chr19:1221340-1221694	chr19:1221340-1221664		chr19:1221665-1221694;chr19:1221695-1221947	chr19:1221694-1221695;chr19:1221947-1221948		0.00	0.98	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	5.71	0.00	0.00	7.14	0.00	1.92	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.363217	0.709013
N	jcn_only_AA	FTSJ1	chrX	+	chrX:46434859-46484697	chrX:46434859-46457194		chrX:46457195-46484697	chrX:46484697-46484698		100.00	100.00	92.86	100.00	100.00	100.00	94.87	98.11	100.00	97.94	100.00	100.00	100.00	100.00	98.63	100.00	97.37	100.00	100.00	100.00	97.87	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.538418	0.776438
N	alternative_acceptor	TNK2	chr3	-	chr3:195594136-195594231;chr3:195594130-195594231	chr3:195594152-195594231		chr3:195594130-195594135;chr3:195594136-195594151	chr3:195594129-195594130;chr3:195594135-195594136		3.64	6.67	6.25	NA	7.69	NA	NA	0.00	0.00	NA	NA	NA	NA	0.00	0.00	NA	0.00	NA	5.26	3.57	0.00	NA	6.67	NA	0.00	2.04	0.00	NA	0.00	NA	3.85	5.56	5.88	NA	10.00	0.00	5.57	2.80	-2.77	0.242050	0.696516
K	intron_retention		chr6	+	chr6:31918722-31918920				chr6:31918721-31918722;chr6:31918920-31918921		2.99	3.57	0.83	5.80	3.70	5.21	NA	1.11	0.60	NA	NA	4.58	NA	0.97	0.61	7.69	NA	3.40	3.92	3.20	0.72	17.65	6.67	9.15	8.57	4.50	0.97	18.60	18.18	11.66	3.10	0.90	2.08	13.04	0.00	9.10	3.75	3.04	-0.70	0.172199	1.000000
N	cassette	TRNAU1AP	chr1	+	chr1:28893926-28904011;chr1:28897851-28904011	chr1:28893926-28898378,chr1:28897851-28898378;chr1:28898413-28904011		chr1:28898379-28898412			96.97	100.00	100.00	100.00	100.00	96.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	100.00	100.00	100.00	100.00	100.00	97.80	100.00	97.37	100.00	94.87	96.67	100.00	100.00	100.00	100.00	100.00	100.00	96.75	100.00	100.00	100.00	100.00	100.00	0.00	0.773525	0.932292
N	jcn_only_AA	MCRS1	chr12	-	chr12:49952513-49952625;chr12:49946666-49952625;chr12:49952534-49952625	chr12:49950534-49952625		chr12:49946666-49950533;chr12:49950534-49952512;chr12:49952513-49952533	chr12:49946665-49946666;chr12:49950533-49950534;chr12:49952512-49952513		0.00	2.86	0.00	5.41	5.77	0.00	0.00	0.00	8.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.00	0.00	4.17	6.67	0.00	0.00	0.00	16.67	2.94	5.26	0.00	5.41	4.76	9.38	0.00	6.25	0.00	3.45	0.00	0.00	0.00	0.498015	0.752925
K	cassette	MTMR14	chr3	+	chr3:9726932-9730379	chr3:9726932-9729504;chr3:9729576-9730379		chr3:9729505-9729575			95.00	93.85	97.92	96.43	98.44	100.00	100.00	100.00	97.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	95.00	93.94	97.87	100.00	100.00	96.77	100.00	100.00	100.00	100.00	98.36	100.00	96.00	100.00	92.06	100.00	97.75	100.00	97.50	98.00	0.50	0.727529	0.905209
K	intron_retention	MYL5	chr4	+	chr4:669999-672446				chr4:669998-669999;chr4:672446-672447		22.22	11.11	20.00	17.65	10.00	11.54	NA	NA	0.00	NA	NA	NA	NA	NA	14.29	NA	NA	NA	8.33	31.25	9.68	NA	50.00	18.18	16.13	25.00	14.29	NA	41.18	9.09	7.69	12.50	4.55	46.67	36.84	30.43	9.72	23.61	13.89	0.241130	1.000000
K	intron_retention	BCKDK	chr16	+	chr16:31123349-31123441				chr16:31123348-31123349;chr16:31123441-31123442		25.37	25.32	30.65	22.64	29.17	21.28	15.05	18.60	14.04	21.74	11.69	12.50	18.75	21.82	30.23	23.94	27.27	9.09	16.16	22.45	20.16	18.75	30.36	35.29	19.44	25.71	18.52	24.44	25.68	17.24	21.74	26.67	23.08	25.00	29.41	26.19	19.09	22.13	3.04	0.912475	1.000000
K	alternative_donor	MRPS11	chr15	+	chr15:89011256-89015857	chr15:89012377-89015857		chr15:89011256-89012376	chr15:89011255-89011256		3.57	2.44	5.00	0.00	2.38	0.00	2.17	5.26	1.82	1.14	1.37	0.00	1.82	0.00	1.52	2.63	1.11	0.00	0.00	5.00	1.79	3.85	2.04	0.00	0.00	7.14	2.70	0.00	2.50	0.00	0.00	2.04	4.35	3.12	2.22	4.08	2.00	4.29	2.29	0.252094	0.623776
K	intron_retention	ATPIF1	chr1	+	chr1:28562964-28564347				chr1:28562963-28562964;chr1:28564347-28564348		8.57	6.99	8.78	2.86	4.91	4.96	3.12	0.00	5.38	2.96	3.60	1.68	5.58	0.00	3.75	5.71	4.15	2.06	5.38	8.33	4.75	7.69	6.13	4.55	6.85	7.89	9.56	8.57	8.33	4.48	6.45	9.35	6.43	4.05	8.82	6.38	6.00	7.17	1.17	0.949188	1.000000
K	jcn_only_AA	AK1,RP11-203J24.9	chr9	-	chr9:130630755-130634101	chr9:130630792-130634101		chr9:130630755-130630791	chr9:130630754-130630755		100.00	98.26	100.00	96.97	95.45	100.00	100.00	NA	NA	100.00	96.88	100.00	100.00	NA	NA	100.00	100.00	100.00	96.99	100.00	92.86	100.00	98.00	86.67	100.00	100.00	98.67	94.44	97.18	96.88	100.00	96.83	94.67	100.00	95.74	98.25	99.13	100.00	0.87	0.116509	0.663989
N	alternative_acceptor	RMDN1	chr8	-	chr8:87487144-87489522;chr8:87487826-87489522	chr8:87487183-87489522		chr8:87487144-87487182;chr8:87487183-87487825	chr8:87487143-87487144;chr8:87487182-87487183		77.78	80.49	65.79	72.22	78.79	72.22	65.52	84.62	76.19	77.27	73.33	77.78	83.33	81.82	76.67	81.82	73.68	66.67	69.77	92.31	78.57	NA	86.36	NA	80.43	70.59	74.19	80.00	80.00	91.67	83.33	65.22	80.65	72.22	77.27	75.00	80.46	82.57	2.11	0.255055	0.709013
N	jcn_only_AA	C5orf51	chr5	+	chr5:10258416-10258515	chr5:10258416-10258497		chr5:10258498-10258515	chr5:10258515-10258516		95.95	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.08	100.00	100.00	99.42	98.99	NA	100.00	100.00	100.00	100.00	100.00	91.23	100.00	100.00	98.29	100.00	100.00	100.00	98.04	-1.96	0.109915	0.663989
K	jcn_only_AA	PPP6R2	chr22	+	chr22:50882547-50882631	chr22:50882547-50882627		chr22:50882628-50882631	chr22:50882631-50882632		100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.10	95.65	92.31	100.00	100.00	100.00	100.00	96.97	92.86	100.00	NA	100.00	100.00	98.94	100.00	100.00	100.00	96.84	100.00	100.00	100.00	100.00	97.56	97.92	96.61	97.86	100.00	100.00	100.00	100.00	100.00	0.00	0.643060	0.840592
N	alternative_acceptor	PLXND1	chr3	-	chr3:129275314-129275459;chr3:129274387-129275459;chr3:129275318-129275459	chr3:129275272-129275459		chr3:129274387-129275271;chr3:129275272-129275313;chr3:129275314-129275317	chr3:129274386-129274387;chr3:129275271-129275272;chr3:129275313-129275314		92.00	88.88	89.14	86.05	86.45	79.33	97.95	96.15	92.76	97.32	96.06	100.00	96.72	96.25	91.24	94.84	96.61	96.77	88.69	85.14	90.57	84.30	83.64	86.61	87.48	97.62	92.23	91.41	91.41	95.09	85.19	85.92	79.25	90.23	90.62	89.39	88.78	94.08	5.29	0.552214	0.824386
K	intron_retention		chr7	-	chr7:100174629-100174708				chr7:100174628-100174629;chr7:100174708-100174709		17.74	17.50	24.47	16.67	27.59	7.69	0.00	0.00	12.50	NA	0.00	0.00	3.03	3.03	4.76	0.00	0.00	0.00	12.50	9.26	8.89	16.67	27.91	13.33	25.86	9.09	20.00	28.57	11.11	5.88	18.18	21.43	16.67	17.65	24.14	16.67	14.59	9.18	-5.41	0.845483	1.000000
K	cassette	CMAS	chr12	+	chr12:22213861-22215214	chr12:22213861-22214214;chr12:22214387-22215214		chr12:22214215-22214386			96.77	100.00	95.45	NA	100.00	NA	95.45	97.14	91.67	92.86	97.01	NA	97.30	94.12	94.44	96.88	93.88	100.00	90.00	96.67	93.33	95.00	95.45	90.00	NA	100.00	92.50	100.00	91.11	92.31	92.59	95.12	NA	96.43	93.62	100.00	96.38	96.72	0.34	0.832978	0.944391
K	alternative_donor	ZBTB8OS	chr1	-	chr1:33099674-33100368	chr1:33099674-33100302		chr1:33100303-33100368	chr1:33100368-33100369		0.00	2.56	0.00	0.00	2.27	0.00	3.03	7.69	7.69	5.00	3.57	6.90	2.86	11.11	13.51	0.00	1.67	0.00	0.00	6.67	5.88	0.00	2.78	0.00	0.00	0.00	0.00	0.00	2.50	4.17	0.00	4.00	0.00	0.00	0.00	0.00	1.28	3.33	2.05	0.223388	0.597165
K	intron_retention	GSDMD	chr8	+	chr8:144643594-144643911				chr8:144643593-144643594;chr8:144643911-144643912		1.82	5.80	0.93	0.00	0.00	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	1.47	0.00	0.00	6.25	0.00	2.13	0.00	0.00	0.00	0.00	1.56	3.07	0.00	0.00	0.00	1.72	0.00	0.78	0.78	0.405110	1.000000
K	intron_retention	FIBP	chr11	-	chr11:65652658-65653000				chr11:65652657-65652658;chr11:65653000-65653001		3.39	0.00	2.82	0.00	2.90	0.00	0.00	4.35	2.08	0.00	2.82	0.00	2.70	0.00	0.00	2.56	2.56	0.00	1.90	1.61	3.90	0.00	1.43	4.35	0.00	5.56	1.72	0.00	4.69	6.25	1.92	5.63	0.76	3.57	0.00	4.65	0.38	2.66	2.28	0.383475	1.000000
K	intron_retention	CLASRP	chr19	+	chr19:45571317-45571677				chr19:45571316-45571317;chr19:45571677-45571678		4.55	4.64	9.30	2.78	7.58	1.82	NA	NA	NA	NA	NA	NA	0.00	0.00	18.75	NA	NA	NA	6.32	9.09	10.87	0.00	5.88	4.17	2.88	4.76	6.06	7.14	9.09	15.79	6.82	7.79	4.35	6.90	9.38	7.14	4.35	4.76	0.41	0.609178	1.000000
K	cassette	SERPINB1	chr6	-	chr6:2840829-2842045	chr6:2840829-2841449;chr6:2841710-2842045		chr6:2841450-2841709			2.75	0.00	2.80	4.00	4.76	20.59	5.31	5.26	8.74	7.62	4.00	5.99	3.70	4.22	4.20	8.82	7.29	8.55	NA	2.22	0.00	3.33	2.44	3.16	NA	2.82	1.34	4.65	0.00	4.64	2.30	4.67	0.00	5.04	5.56	4.81	1.85	2.79	0.94	0.520916	0.797002
K	intron_retention	NAP1L4	chr11	-	chr11:2973040-2975756				chr11:2973039-2973040;chr11:2975756-2975757		2.86	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	6.25	5.71	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	5.00	0.00	0.00	2.27	3.85	0.00	0.00	0.00	0.928183	1.000000
K	intron_retention	IFFO1	chr12	-	chr12:6650809-6657230				chr12:6650808-6650809;chr12:6657230-6657231		3.45	6.30	1.85	7.14	2.02	NA	0.00	0.00	0.00	0.00	1.14	NA	0.00	0.00	3.45	0.00	1.56	NA	0.00	0.00	2.56	0.00	3.59	0.00	4.62	2.44	3.17	0.00	2.19	0.00	0.00	1.47	4.11	0.00	2.13	0.00	2.06	0.00	-2.06	0.660083	1.000000
K	cassette	EWSR1	chr22	+	chr22:29674206-29682911	chr22:29674206-29678378;chr22:29678547-29682911		chr22:29678379-29678546			97.22	100.00	95.95	100.00	100.00	NA	97.65	94.92	96.59	97.34	96.95	96.28	96.52	96.55	94.92	96.46	96.35	97.36	NA	95.00	92.59	96.77	96.77	95.35	100.00	100.00	95.45	100.00	97.18	100.00	92.59	95.00	NA	97.92	97.00	95.92	98.83	95.78	-3.05	0.101291	0.683336
K	cassette	RPS24	chr10	+	chr10:79797063-79800372	chr10:79797063-79799961;chr10:79799984-79800372		chr10:79799962-79799983			68.21	90.69	77.27	86.57	89.48	89.94	68.95	44.44	49.41	67.59	64.76	68.97	77.86	49.35	58.22	72.56	79.63	78.16	87.83	65.73	53.14	83.16	87.85	84.39	82.35	55.88	59.90	72.91	78.79	78.43	75.76	79.67	85.28	84.43	85.51	86.30	83.81	60.81	-23.01	0.004559	0.236885
K	jcn_only_AA	CLEC11A	chr19	+	chr19:51227859-51228278	chr19:51227859-51228229		chr19:51228230-51228278	chr19:51228278-51228279		1.85	2.18	0.00	0.00	2.01	1.69	0.00	0.00	0.00	0.00	0.00	0.00	2.65	3.85	NA	0.00	7.69	4.17	1.87	0.00	0.00	0.00	1.16	0.00	1.86	0.00	0.00	2.86	3.49	0.00	2.08	0.00	0.76	0.00	2.11	2.01	1.87	0.93	-0.94	0.743803	0.885252
N	jcn_only_AA	AP1B1	chr22	-	chr22:29782977-29784412;chr22:29765379-29784412;chr22:29763257-29784412	chr22:29763260-29784412		chr22:29763257-29763259;chr22:29763260-29765378;chr22:29765379-29782976	chr22:29763256-29763257;chr22:29763259-29763260;chr22:29765378-29765379		100.00	96.88	98.33	NA	NA	NA	98.98	98.37	97.53	99.20	98.83	99.32	98.88	99.04	97.14	98.44	99.33	98.60	100.00	97.83	NA	92.31	97.86	95.35	100.00	97.87	100.00	100.00	98.75	93.75	100.00	96.97	100.00	96.00	99.21	98.72	99.49	98.71	-0.78	0.681081	0.857722
N	jcn_only_AD	TTC7A	chr2	+	chr2:47202243-47205930;chr2:47205389-47205930	chr2:47205314-47205930		chr2:47202243-47205313;chr2:47205314-47205388	chr2:47202242-47202243;chr2:47205313-47205314		0.00	0.00	0.00	NA	NA	NA	0.00	9.09	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	NA	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	jcn_only_AA	RAB10	chr2	+	chr2:26257605-26321530;chr2:26257605-26316459;chr2:26257605-26270005	chr2:26257605-26321536		chr2:26270006-26316459;chr2:26316460-26321530;chr2:26321531-26321536	chr2:26316459-26316460;chr2:26321530-26321531;chr2:26321536-26321537		0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.373901	0.663989
N	alternative_acceptor	DOCK1,RASSF4	chr10	+	chr10:45478112-45479469;chr10:45478112-45479438;chr10:45478112-45479343;chr10:45478112-45479388;chr10:45478112-45479317	chr10:45478112-45478357		chr10:45478358-45479317;chr10:45479318-45479343;chr10:45479344-45479388;chr10:45479389-45479438;chr10:45479439-45479469	chr10:45479317-45479318;chr10:45479343-45479344;chr10:45479388-45479389;chr10:45479438-45479439;chr10:45479469-45479470		5.00	6.45	6.22	NA	NA	NA	0.79	0.77	0.50	1.40	1.28	2.83	2.01	1.38	1.30	2.78	2.53	7.81	NA	3.16	1.25	4.17	5.41	7.02	8.33	2.74	4.50	2.82	3.23	2.46	0.00	2.94	NA	2.63	5.41	5.63	4.23	2.06	-2.17	0.314900	0.709013
K	intron_retention	USE1	chr19	+	chr19:17329201-17330021				chr19:17329200-17329201;chr19:17330021-17330022		0.00	4.08	NA	10.00	10.71	10.42	0.00	NA	NA	0.00	4.76	NA	0.00	NA	6.67	0.00	0.00	NA	7.32	5.88	2.86	7.69	10.87	10.42	5.66	22.73	NA	0.00	10.87	7.69	4.00	4.76	10.14	12.50	7.89	11.11	4.87	4.94	0.07	0.698300	1.000000
K	alternative_first_exon	S100A8	chr1	-	chr1:153363034-153363516	chr1:153363034-153363332	chr1:153363517-153363664	chr1:153363333-153363452			0.57	0.00	0.75	0.00	15.38	0.00	NA	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.93	0.57	0.54	0.00	0.00	NA	0.00	0.00	1.15	5.00	NA	0.00	0.95	0.61	0.00	0.00	0.00	2.63	0.00	0.28	0.28	0.531785	0.669242
N	jcn_only_AD	ANPEP	chr15	-	chr15:90347849-90348176;chr15:90347849-90348352	chr15:90347849-90348308		chr15:90348177-90348308;chr15:90348309-90348352	chr15:90348308-90348309;chr15:90348352-90348353		99.66	100.00	99.57	100.00	100.00	90.00	100.00	99.93	100.00	99.59	99.36	99.06	100.00	99.90	100.00	99.03	99.34	99.51	NA	99.15	100.00	99.34	99.27	97.52	100.00	99.55	99.32	98.81	98.30	99.30	100.00	99.81	NA	98.70	99.00	97.81	100.00	99.78	-0.22	0.068492	0.593730
K	alternative_last_exon	BRD4	chr19	-	chr19:15364595-15364962;chr19:15355574-15364962	chr19:15360102-15364962	chr19:15363803-15364594;chr19:15355521-15355573	chr19:15357858-15360101			57.69	88.24	45.95	86.67	90.00	92.00	71.43	56.41	56.76	66.67	64.71	62.07	56.67	66.67	46.67	58.70	57.58	46.67	80.00	64.71	83.33	80.00	73.91	66.67	64.29	68.18	54.55	77.78	86.96	91.30	70.59	57.14	78.57	65.52	65.52	66.67	75.00	65.69	-9.31	0.121680	0.340761
N	alternative_donor	CDC26	chr9	-	chr9:116035719-116037661;chr9:116035719-116037509;chr9:116035719-116036839	chr9:116035719-116037657		chr9:116036840-116037509;chr9:116037510-116037657;chr9:116037658-116037661	chr9:116037509-116037510;chr9:116037657-116037658;chr9:116037661-116037662		8.33	0.00	4.55	0.00	0.00	0.00	4.55	2.63	3.33	3.12	8.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.00	0.00	4.88	0.00	5.41	0.00	5.88	2.38	0.00	0.00	0.00	3.12	0.00	2.59	2.59	0.149328	0.563084
N	alternative_donor	TCF25	chr16	+	chr16:89976760-89976998;chr16:89975492-89976998;chr16:89976765-89976998;chr16:89976334-89976998	chr16:89975516-89976998		chr16:89975492-89975515;chr16:89975516-89976333;chr16:89976334-89976759;chr16:89976760-89976764	chr16:89975491-89975492;chr16:89975515-89975516;chr16:89976333-89976334;chr16:89976759-89976760		21.43	44.83	33.33	22.22	35.00	21.74	NA	NA	NA	NA	NA	NA	NA	NA	40.00	40.00	NA	NA	27.78	27.27	40.00	NA	42.86	NA	46.67	41.67	47.06	NA	33.33	50.00	9.09	20.00	29.41	12.50	18.18	13.04	37.12	24.35	-12.77	0.197333	0.570816
N	jcn_only_AA	C19orf66	chr19	+	chr19:10202030-10202259;chr19:10202030-10202282;chr19:10202030-10202164;chr19:10202030-10202135	chr19:10202030-10202151		chr19:10202136-10202151;chr19:10202152-10202164;chr19:10202165-10202259;chr19:10202260-10202282	chr19:10202151-10202152;chr19:10202164-10202165;chr19:10202259-10202260;chr19:10202282-10202283		94.55	100.00	86.36	NA	100.00	94.55	75.00	89.02	88.89	87.50	80.00	91.04	94.74	90.91	89.09	89.29	86.36	78.57	100.00	93.85	93.33	NA	NA	97.78	NA	100.00	100.00	92.00	NA	86.96	90.00	93.33	NA	100.00	NA	97.37	97.37	92.38	-4.99	0.925451	0.976281
K	intron_retention	UNC50	chr2	+	chr2:99232810-99232894				chr2:99232809-99232810;chr2:99232894-99232895		0.00	11.76	4.76	0.00	2.94	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	4.35	0.00	4.88	0.00	0.00	0.00	0.00	9.52	0.00	0.00	5.13	8.33	14.29	0.00	0.00	0.00	0.888967	1.000000
K	cassette	RSRP1	chr1	-	chr1:25570716-25571640;chr1:25570125-25571640	chr1:25570125-25570944,chr1:25570716-25570944;chr1:25570990-25571640		chr1:25570945-25570989			1.96	3.49	8.64	11.76	7.41	NA	0.00	6.67	6.67	0.00	0.00	7.14	0.00	21.43	0.00	NA	9.09	NA	3.03	5.13	6.12	16.00	4.76	19.35	16.67	11.76	8.33	15.38	14.81	5.88	5.38	6.54	1.75	15.22	17.95	18.03	2.39	6.03	3.64	0.262778	0.709176
K	alternative_acceptor	TECR	chr19	+	chr19:14673388-14673952;chr19:14673388-14673985	chr19:14673388-14674017		chr19:14673953-14673985;chr19:14673986-14674017	chr19:14673985-14673986;chr19:14674017-14674018		97.22	100.00	97.14	95.24	98.33	100.00	96.63	100.00	97.83	96.77	96.06	98.26	96.59	95.45	100.00	96.08	95.31	96.47	97.37	95.65	97.14	98.59	98.91	98.36	100.00	100.00	95.83	97.89	96.89	98.46	100.00	94.87	97.22	94.92	97.22	96.15	97.30	98.61	1.31	0.941027	0.984632
N	jcn_only_AD	TAF15	chr17	+	chr17:34151203-34160910;chr17:34152468-34160910	chr17:34151104-34160910		chr17:34151104-34151202;chr17:34151203-34152467	chr17:34151103-34151104;chr17:34151202-34151203		31.58	0.00	22.06	NA	22.58	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.64	0.00	0.00	0.00	0.00	0.00	44.83	0.00	0.00	0.00	28.57	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	30.19	0.00	0.00	13.64	13.64	0.111970	0.646283
K	intron_retention	MRPL52	chr14	+	chr14:23299150-23299261				chr14:23299149-23299150;chr14:23299261-23299262		20.00	11.32	17.14	32.26	18.42	24.24	7.14	NA	20.00	9.52	0.00	NA	12.50	20.00	28.57	35.29	3.33	NA	18.18	24.32	21.28	42.86	31.43	30.00	9.52	28.57	24.32	50.00	25.00	30.77	22.58	13.79	17.31	26.67	36.00	28.57	11.91	22.58	10.67	0.118054	1.000000
K	alternative_acceptor	MRPL9	chr1	-	chr1:151732508-151733291	chr1:151732658-151733291		chr1:151732508-151732657	chr1:151732507-151732508		100.00	100.00	92.11	100.00	94.12	87.50	93.33	100.00	100.00	100.00	96.43	100.00	93.55	100.00	100.00	88.24	100.00	100.00	100.00	100.00	94.87	100.00	94.12	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	91.67	96.43	88.46	100.00	100.00	0.00	0.174763	0.660713
N	jcn_only_AA	TRIM21	chr11	-	chr11:4406625-4407386;chr11:4407141-4407386;chr11:4407110-4407386;chr11:4406413-4407386	chr11:4407084-4407386		chr11:4406413-4406624;chr11:4406625-4407083;chr11:4407084-4407109;chr11:4407110-4407140	chr11:4406412-4406413;chr11:4406624-4406625;chr11:4407083-4407084;chr11:4407109-4407110		98.31	100.00	100.00	100.00	96.55	87.50	100.00	96.55	100.00	98.51	100.00	98.92	100.00	98.27	100.00	100.00	100.00	100.00	NA	96.67	100.00	100.00	94.59	98.10	NA	96.77	100.00	98.96	100.00	95.74	100.00	98.94	100.00	100.00	100.00	98.78	100.00	97.52	-2.48	0.009930	0.482846
K	intron_retention	MYO18A	chr17	-	chr17:27401933-27409333				chr17:27401932-27401933;chr17:27409333-27409334		7.69	5.45	5.88	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	2.78	0.00	0.00	0.00	0.00	0.514374	1.000000
K	intron_retention	SUN2	chr22	-	chr22:39134760-39134877				chr22:39134759-39134760;chr22:39134877-39134878		7.53	0.00	3.15	NA	0.00	NA	0.00	3.80	5.13	0.00	0.00	3.57	0.00	7.87	7.35	3.45	0.00	5.17	0.00	9.18	0.00	0.00	0.00	25.00	0.00	16.92	4.29	17.24	2.38	42.86	9.09	9.21	NA	5.41	2.33	27.14	0.00	8.48	8.48	0.019768	1.000000
N	jcn_only_AD	HEATR9	chr17	-	chr17:79872407-79872489	chr17:79872407-79872479		chr17:79872480-79872489	chr17:79872489-79872490		95.45	92.75	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	88.10	90.00	90.91	95.77	88.00	94.12	87.50	95.45	100.00	92.59	95.24	94.55	94.05	100.00	100.00	94.87	100.00	100.00	95.00	-5.00	0.214990	0.657607
K	intron_retention	PSMB8	chr6	-	chr6:32810561-32810718				chr6:32810560-32810561;chr6:32810718-32810719		4.10	0.00	6.92	4.55	3.33	4.84	0.89	1.65	1.11	1.19	0.90	0.61	1.98	1.13	2.50	0.00	1.05	0.00	2.63	5.16	2.86	2.63	5.45	7.63	0.00	3.60	4.67	5.75	2.74	3.54	4.49	6.45	2.56	11.67	9.62	5.79	1.44	3.85	2.41	0.816315	1.000000
K	intron_retention	TYMP	chr22	-	chr22:50964571-50964674				chr22:50964570-50964571;chr22:50964674-50964675		4.45	2.92	5.78	8.33	7.06	6.42	2.54	2.11	2.63	4.76	3.16	2.99	1.72	2.42	3.93	3.49	1.80	2.91	3.48	5.30	4.05	10.85	7.45	7.77	2.61	3.42	4.45	6.53	7.34	6.45	5.71	7.56	5.61	6.67	5.96	6.56	2.76	3.94	1.17	0.674609	1.000000
K	intron_retention	NADK	chr1	-	chr1:1686916-1687696				chr1:1686915-1686916;chr1:1687696-1687697		8.79	22.58	13.51	0.00	7.69	0.00	0.89	1.06	1.10	0.00	2.17	3.33	1.68	1.52	3.41	2.08	0.00	0.00	5.26	7.03	2.22	6.25	9.09	10.42	12.00	6.69	9.52	14.29	10.34	4.17	7.53	13.21	13.33	12.50	13.33	9.86	8.63	6.86	-1.77	0.801951	1.000000
N	jcn_only_AA	ZNF143	chr11	+	chr11:64008605-64009890	chr11:64008605-64009855		chr11:64009856-64009890	chr11:64009890-64009891		100.00	100.00	95.74	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.50	100.00	100.00	100.00	92.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
K	intron_retention	MRGBP	chr20	+	chr20:61428584-61429938				chr20:61428583-61428584;chr20:61429938-61429939		8.33	0.00	4.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	9.09	0.00	0.00	14.29	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	4.17	4.17	0.629122	1.000000
K	intron_retention	SPNS1	chr16	+	chr16:28993378-28993676				chr16:28993377-28993378;chr16:28993676-28993677	chr16:28993222-28993377;chr16:28993677-28993866	2.99	3.45	1.79	0.00	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.80	0.00	0.00	3.03	3.85	1.54	1.37	5.56	2.00	2.94	0.00	3.51	0.00	2.42	1.85	3.03	3.08	1.35	0.94	3.09	0.95	2.15	1.50	-0.65	0.995191	1.000000
N	jcn_only_AA	TFEC	chr7	-	chr7:115580499-115581946;chr7:115580778-115581946	chr7:115580986-115581946		chr7:115580499-115580777;chr7:115580778-115580985	chr7:115580498-115580499;chr7:115580777-115580778		100.00	100.00	100.00	100.00	96.67	NA	96.77	93.73	96.57	96.00	94.83	88.79	97.87	95.80	97.35	96.08	88.89	90.80	100.00	95.65	100.00	93.94	95.74	94.29	NA	98.22	100.00	97.47	100.00	95.56	96.05	99.05	NA	100.00	98.63	100.00	98.94	95.92	-3.01	0.123245	0.663989
K	intron_retention	RHOT2	chr16	+	chr16:720558-720674				chr16:720557-720558;chr16:720674-720675		0.00	0.00	5.56	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	5.26	0.00	0.00	0.00	NA	5.56	3.57	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
K	cassette	LCMT1	chr16	+	chr16:25182127-25189321	chr16:25182127-25186257;chr16:25186356-25189321		chr16:25186258-25186355			100.00	93.24	100.00	93.33	96.97	97.47	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	93.18	97.30	96.88	100.00	100.00	94.12	95.16	100.00	96.43	90.91	97.14	100.00	92.86	93.75	94.12	100.00	96.15	100.00	94.64	100.00	5.36	0.203391	0.709176
K	alternative_donor	TMEM205	chr19	-	chr19:11456305-11456802;chr19:11456305-11456683	chr19:11456305-11456883		chr19:11456684-11456802;chr19:11456803-11456883	chr19:11456802-11456803;chr19:11456883-11456884		3.23	0.00	3.49	0.00	0.00	13.04	7.14	0.00	3.28	8.33	6.90	11.11	3.33	0.00	5.45	3.57	14.29	0.00	7.41	10.34	6.49	7.41	6.98	13.64	0.00	0.00	5.26	12.50	10.87	5.26	12.50	5.80	8.33	16.00	6.06	8.33	5.23	1.61	-3.62	0.993497	0.997782
K	cassette	HNRNPC	chr14	-	chr14:21702389-21737456	chr14:21702389-21731469;chr14:21731742-21737456		chr14:21731470-21731741			21.59	25.00	21.94	46.43	41.30	NA	66.48	45.07	36.21	73.39	64.03	64.82	63.64	47.46	36.64	69.64	60.17	61.01	NA	19.64	22.06	49.69	45.37	47.97	NA	20.79	22.37	69.91	56.34	56.59	10.78	14.66	30.00	44.44	39.46	35.97	46.82	21.19	-25.63	0.195892	0.709176
K	jcn_only_AA	RPLP0	chr12	-	chr12:120638635-120638885	chr12:120638695-120638885		chr12:120638635-120638694	chr12:120638634-120638635		9.09	13.83	9.80	6.90	7.09	6.06	11.78	0.00	7.63	5.29	6.35	4.83	10.96	0.00	6.35	8.68	4.56	4.67	3.51	3.70	8.93	5.56	5.90	4.83	0.00	NA	11.63	8.43	6.72	7.97	0.00	0.00	6.35	5.46	7.10	6.41	8.66	0.00	-8.66	0.099865	0.663989
K	intron_retention	CIC	chr19	+	chr19:42798888-42798975				chr19:42798887-42798888;chr19:42798975-42798976		2.22	0.00	2.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.34	0.00	0.00	6.06	NA	NA	3.33	0.00	0.00	0.00	NA	7.14	7.69	0.00	4.55	0.00	0.00	0.00	2.78	2.78	0.202601	1.000000
K	intron_retention	AC005606.15	chr16	+	chr16:2047934-2048150				chr16:2047933-2047934;chr16:2048150-2048151		100.00	91.67	88.46	90.91	93.22	94.29	100.00	100.00	100.00	80.00	80.00	81.82	100.00	NA	86.36	86.49	100.00	100.00	94.03	83.33	92.50	100.00	86.67	87.50	100.00	100.00	85.19	100.00	89.29	92.11	90.32	94.12	90.12	86.96	90.91	91.67	97.02	100.00	2.98	0.861127	1.000000
N	jcn_only_AA		chr20	+	chr20:47850247-47852869	chr20:47850247-47851471					100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.75	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.663989
N	alternative_donor	SELO	chr22	+	chr22:50649341-50654145	chr22:50651114-50654145		chr22:50649341-50651113	chr22:50649340-50649341		4.44	1.41	8.33	0.00	0.00	0.00	4.00	1.89	2.86	0.00	5.26	NA	4.17	1.92	4.88	4.17	4.35	8.33	0.00	2.70	0.00	7.14	5.26	5.26	2.08	2.70	2.78	3.70	3.33	1.89	2.50	2.22	0.00	6.45	5.56	6.25	1.75	2.60	0.85	0.403267	0.667062
K	intron_retention	PSTPIP1	chr15	+	chr15:77325294-77327848				chr15:77325293-77325294;chr15:77327848-77327849		2.63	3.18	7.14	0.00	4.00	0.00	0.00	NA	0.00	0.00	0.00	NA	1.67	NA	0.00	NA	0.00	NA	1.96	5.56	1.72	0.00	4.35	0.00	3.14	8.33	6.25	NA	2.44	NA	0.00	6.00	1.65	0.00	5.26	0.00	1.81	4.09	2.28	0.908972	1.000000
N	cassette	PKM	chr15	-	chr15:72492997-72499068	chr15:72492997-72495362;chr15:72495530-72499068		chr15:72495363-72495529			100.00	100.00	90.62	NA	90.91	NA	100.00	NA	NA	100.00	89.29	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	85.71	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	90.00	100.00	100.00	100.00	100.00	100.00	0.00	0.717278	0.899501
K	intron_retention	RP11-124N14.3	chr10	-	chr10:17275898-17276700				chr10:17275897-17275898;chr10:17276700-17276701		73.52	71.58	75.12	81.69	82.24	78.61	72.20	72.76	72.71	69.93	68.34	68.73	74.04	73.20	73.50	72.49	70.53	70.49	75.11	80.65	79.34	80.59	83.12	79.90	69.85	74.08	71.49	80.34	82.72	77.16	80.82	80.55	76.96	82.28	81.56	84.13	73.12	73.80	0.68	0.779765	1.000000
N	cassette	DNAJC4	chr11	+	chr11:63998413-63999901;chr11:63998413-64001365;chr11:63998413-64000175	chr11:63998413-63999342;chr11:63999437-64001365,chr11:63999437-63999901,chr11:63999437-64000175		chr11:63999343-63999436			96.30	100.00	100.00	76.47	90.00	80.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	84.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.31	100.00	100.00	95.65	100.00	100.00	0.00	0.332286	0.709176
N	cassette	CSF3R	chr1	-	chr1:36939489-36945033	chr1:36939489-36940977;chr1:36941275-36945033		chr1:36940978-36941274			100.00	100.00	100.00	NA	NA	NA	100.00	98.51	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	98.36	100.00	NA	100.00	NA	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AD	RNF149,WDR33	chr2	-	chr2:101888207-101889588	chr2:101888207-101889303		chr2:101889304-101889588	chr2:101889588-101889589		3.19	0.00	3.17	0.00	0.00	0.00	NA	31.25	NA	NA	NA	27.27	41.67	58.82	53.85	NA	NA	56.25	0.00	4.55	2.63	0.00	0.00	3.70	6.25	18.64	5.50	15.79	16.67	31.03	19.23	10.29	11.11	17.86	20.00	22.22	6.25	18.94	12.69	0.369102	0.657607
N	alternative_donor	VWA5A	chr11	+	chr11:124013280-124015943	chr11:124015832-124015943		chr11:124013280-124015831	chr11:124013279-124013280		6.67	3.33	5.56	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	2.56	NA	0.00	NA	0.00	4.35	NA	NA	0.00	0.00	0.00	0.00	0.00	0.670180	0.855294
K	cassette	YKT6	chr7	+	chr7:44247798-44251845	chr7:44247798-44250621;chr7:44250724-44251845		chr7:44250622-44250723			96.83	94.87	100.00	94.44	97.78	96.72	97.70	98.51	96.77	96.91	95.65	94.64	96.43	100.00	98.51	95.96	95.42	96.00	100.00	97.14	98.18	93.33	97.87	97.01	100.00	95.52	97.06	96.61	97.06	98.41	93.24	96.20	95.00	95.79	97.12	96.49	97.06	96.98	-0.08	0.739368	0.911876
N	alternative_acceptor	ZNF276	chr16	+	chr16:89800447-89804213	chr16:89800447-89804128		chr16:89804129-89804213	chr16:89804213-89804214		8.00	7.32	6.45	5.26	7.69	6.25	7.69	9.09	NA	0.00	NA	NA	25.00	NA	7.69	0.00	0.00	NA	15.38	12.50	6.67	0.00	4.76	0.00	NA	15.79	6.67	12.50	6.25	5.26	16.67	4.65	6.25	4.76	0.00	2.63	7.69	12.50	4.81	0.984170	0.994790
K	intron_retention	HDAC5	chr17	-	chr17:42156034-42156162				chr17:42156033-42156034;chr17:42156162-42156163		2.78	2.02	1.20	0.00	0.82	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	NA	NA	0.00	NA	1.69	2.08	2.44	0.00	0.00	0.00	1.56	2.27	4.08	0.00	0.00	NA	7.59	2.15	3.10	0.00	0.00	0.00	1.62	2.17	0.55	0.723765	1.000000
K	cassette	TANGO2	chr22	+	chr22:20030967-20039987	chr22:20030967-20035492;chr22:20035852-20039987		chr22:20035493-20035851			0.00	4.55	0.00	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	1.28	0.00	NA	0.00	NA	NA	0.00	NA	7.14	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	-1.09	0.145769	0.709176
K	intron_retention		chr17	+	chr17:43319002-43319213				chr17:43319001-43319002;chr17:43319213-43319214		5.82	13.04	10.06	0.00	5.88	NA	0.00	1.63	1.20	0.00	0.00	0.00	2.13	1.20	1.62	0.88	0.66	0.00	14.29	8.05	5.08	14.29	8.37	10.00	22.73	5.53	5.91	6.35	4.26	0.00	13.95	11.04	15.00	5.33	7.94	8.97	13.66	5.68	-7.99	0.501161	1.000000
K	alternative_first_exon	AC135048.13,ORAI3	chr16	+	chr16:30959890-30964505	chr16:30960839-30964505	chr16:30959707-30959889	chr16:30960387-30960838			83.33	70.27	88.24	NA	61.54	30.00	97.50	86.67	92.59	NA	95.65	NA	95.00	94.12	95.24	83.33	100.00	NA	52.63	73.33	54.17	NA	87.88	NA	35.14	75.00	84.62	NA	80.95	60.00	66.67	80.56	52.17	75.00	83.33	64.71	61.45	79.16	17.71	0.289778	0.502407
K	intron_retention	TBC1D17	chr19	+	chr19:50391092-50391487				chr19:50391091-50391092;chr19:50391487-50391488		51.85	0.00	43.75	8.00	5.88	6.25	4.00	89.47	58.82	30.00	18.75	NA	11.76	96.43	75.68	NA	10.53	NA	5.81	46.43	12.50	46.15	30.30	56.25	5.15	83.33	13.89	37.50	6.90	40.00	2.63	14.63	6.67	30.00	42.86	44.74	5.48	67.59	62.11	0.022526	1.000000
N	jcn_only_AA	BET1L	chr11	-	chr11:206044-207302;chr11:206061-207302	chr11:206039-207302		chr11:206039-206043;chr11:206044-206060	chr11:206038-206039;chr11:206043-206044		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	5.56	6.25	4.17	0.00	4.17	0.00	5.71	0.00	5.88	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.663989
K	alternative_acceptor	DDX41	chr5	-	chr5:176942260-176942685	chr5:176942363-176942685		chr5:176942260-176942362	chr5:176942259-176942260		6.00	3.33	11.11	NA	7.69	NA	0.00	0.00	0.00	1.89	1.45	0.00	0.00	NA	0.00	2.13	1.16	0.00	6.67	3.12	0.00	11.11	10.20	5.26	0.00	0.00	6.90	6.25	0.00	5.26	3.33	7.32	0.00	5.56	5.88	4.44	0.00	3.12	3.12	0.621273	0.854460
N	alternative_acceptor	NUMA1	chr11	-	chr11:71716416-71717080	chr11:71716613-71717080		chr11:71716416-71716612	chr11:71716415-71716416		3.64	3.28	5.38	0.00	2.04	0.00	0.00	0.00	1.64	4.35	5.88	3.03	2.27	0.00	1.23	0.00	1.35	0.00	6.25	5.41	0.00	3.45	10.29	1.67	0.00	1.54	3.19	8.33	3.28	0.00	0.00	5.26	0.00	3.85	4.48	4.71	1.14	0.77	-0.36	0.887555	0.961297
N	jcn_only_AA	GNS	chr12	-	chr12:65110594-65113801;chr12:65111460-65113801	chr12:65110600-65113801		chr12:65110594-65110599;chr12:65110600-65111459	chr12:65110593-65110594;chr12:65110599-65110600		98.07	100.00	98.40	NA	93.75	100.00	99.35	99.05	99.36	99.18	99.13	99.12	98.45	98.36	98.82	99.07	99.22	98.65	100.00	98.27	100.00	100.00	98.41	97.55	100.00	98.80	97.58	98.28	97.75	100.00	97.62	98.46	100.00	97.85	98.67	98.49	100.00	98.31	-1.69	0.003668	0.442962
K	intron_retention	SRSF5	chr14	+	chr14:70235392-70235514				chr14:70235391-70235392;chr14:70235514-70235515		4.17	0.00	4.24	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	1.20	0.00	1.72	NA	2.25	0.00	1.15	0.00	0.00	11.54	4.96	0.00	1.94	1.06	2.54	0.00	2.75	2.75	0.169155	1.000000
N	alternative_donor	HMGN2	chr1	+	chr1:26800309-26800575;chr1:26800230-26800575	chr1:26800224-26800575		chr1:26800224-26800229;chr1:26800230-26800308	chr1:26800223-26800224;chr1:26800229-26800230		95.50	97.81	94.53	97.06	99.11	100.00	99.71	99.10	98.95	100.00	99.62	100.00	99.25	99.10	98.15	99.53	99.61	99.73	98.30	96.17	97.60	98.23	97.96	97.96	95.09	95.20	95.37	98.45	98.98	100.00	95.37	94.14	96.67	98.12	94.12	98.29	98.06	95.84	-2.22	0.325987	0.650093
N	alternative_acceptor	PHC2	chr1	-	chr1:33793029-33794470;chr1:33793054-33794470;chr1:33791751-33794470	chr1:33790621-33794470		chr1:33790621-33791750;chr1:33791751-33793028;chr1:33793029-33793053	chr1:33790620-33790621;chr1:33791750-33791751;chr1:33793028-33793029		93.72	100.00	91.36	100.00	98.84	NA	100.00	98.70	98.94	98.73	98.68	100.00	98.67	98.94	98.46	100.00	99.40	100.00	100.00	95.60	98.46	96.67	95.27	91.30	NA	93.59	94.22	97.30	98.18	100.00	95.59	95.19	100.00	95.38	95.41	91.67	100.00	95.59	-4.41	0.010244	0.471722
K	intron_retention		chr3	+	chr3:49720580-49720669				chr3:49720579-49720580;chr3:49720669-49720670		9.09	3.95	0.00	0.00	3.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.12	0.00	3.88	0.00	6.25	0.00	3.68	0.00	2.50	0.00	5.17	0.00	8.11	8.00	4.15	0.00	5.13	0.00	2.90	0.00	-2.90	0.960413	1.000000
N	alternative_donor	MYO9B	chr19	+	chr19:17256302-17263453	chr19:17256307-17263453		chr19:17256302-17256306	chr19:17256301-17256302		0.00	0.00	1.56	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	0.00	0.373901	0.650093
N	jcn_only_AD	PGS1	chr17	+	chr17:76415807-76420141;chr17:76416405-76420141;chr17:76415757-76420141	chr17:76419377-76420141		chr17:76415757-76415806;chr17:76415807-76416404;chr17:76416405-76419376	chr17:76415756-76415757;chr17:76415806-76415807;chr17:76416404-76416405		6.52	0.00	6.17	6.90	0.00	11.54	0.00	6.67	2.33	0.00	0.00	0.00	16.67	10.00	8.22	9.52	8.33	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	2.22	0.00	0.00	0.00	3.33	4.55	4.17	11.11	NA	17.19	0.00	4.92	4.92	0.946783	0.970791
N	jcn_only_AD	MTCH1	chr6	-	chr6:36938471-36939657;chr6:36938471-36940427	chr6:36938471-36940478		chr6:36939658-36940427;chr6:36940428-36940478	chr6:36940427-36940428;chr6:36940478-36940479		61.46	60.56	59.52	49.09	47.52	57.69	59.46	58.45	54.30	66.28	66.15	65.71	62.61	65.22	58.50	67.25	63.11	67.74	63.04	62.29	52.58	60.69	51.52	68.92	39.39	62.46	52.82	59.87	52.26	61.29	65.57	61.95	56.25	64.71	56.11	61.58	60.01	62.38	2.36	0.185423	0.657607
K	intron_retention	TNFSF13	chr17	+	chr17:7463020-7463162				chr17:7463019-7463020;chr17:7463162-7463163		0.95	8.45	5.56	NA	9.38	NA	0.00	0.70	0.00	0.00	0.75	0.00	1.09	0.50	6.06	0.62	0.56	0.00	13.33	4.35	0.00	3.12	4.71	2.38	11.76	2.86	6.25	0.00	2.17	0.00	8.33	13.64	5.26	0.00	1.45	0.96	6.85	1.90	-4.95	0.756295	1.000000
K	alternative_acceptor	PPP6R3	chr11	+	chr11:68377492-68382099;chr11:68377492-68380533	chr11:68377492-68380503		chr11:68380504-68380533;chr11:68380534-68382099	chr11:68380533-68380534;chr11:68382099-68382100		2.86	8.70	1.61	19.05	12.00	14.29	5.56	7.69	0.00	3.17	0.00	3.33	0.00	0.00	2.44	3.70	5.26	3.45	11.76	5.88	4.17	2.22	2.13	2.33	NA	2.56	1.69	2.78	2.86	5.41	3.23	4.08	15.79	1.45	5.45	0.00	8.70	3.04	-5.65	0.166187	0.660713
K	intron_retention	CSNK2A2	chr16	-	chr16:58192258-58197957				chr16:58192257-58192258;chr16:58197957-58197958		8.82	3.45	15.38	7.69	0.00	26.32	30.43	40.00	35.00	46.94	57.69	57.69	30.77	42.11	40.91	45.95	43.24	56.00	6.67	13.64	2.56	27.78	5.88	38.10	0.00	16.00	8.33	22.22	9.38	12.50	7.69	15.38	0.00	28.57	38.10	24.44	5.06	14.82	9.76	0.865343	1.000000
N	alternative_donor	CPT2	chr1	+	chr1:53676992-53678935;chr1:53676923-53678935	chr1:53678489-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		4.00	3.12	5.26	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	7.69	3.85	0.00	0.00	4.00	NA	7.14	3.45	4.65	6.67	3.85	6.67	6.67	2.50	0.00	4.76	3.33	3.03	1.56	3.65	2.09	0.998580	0.998580
N	alternative_donor	MYL12B	chr18	+	chr18:3255833-3277762	chr18:3277413-3277762		chr18:3255833-3277412	chr18:3255832-3255833		100.00	100.00	100.00	100.00	93.02	96.55	100.00	96.92	96.67	80.00	96.55	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.61	100.00	100.00	97.44	100.00	100.00	97.70	100.00	94.44	83.33	100.00	98.41	100.00	100.00	100.00	100.00	100.00	100.00	98.06	-1.94	0.035264	0.349791
K	intron_retention	GRINA	chr8	+	chr8:145065973-145066045				chr8:145065972-145065973;chr8:145066045-145066046		6.18	7.26	3.95	6.77	3.37	8.33	0.00	0.10	0.19	0.28	0.00	0.33	0.00	0.23	0.27	0.79	0.00	0.78	8.06	4.63	4.34	8.37	4.43	7.44	15.00	3.27	2.87	1.78	0.82	3.05	14.76	9.47	16.00	6.40	4.60	5.31	7.66	3.95	-3.71	0.754417	1.000000
N	alternative_acceptor	ARID1A,SLC50A1	chr1	+	chr1:155110575-155110671;chr1:155110575-155110655	chr1:155110575-155110637		chr1:155110638-155110655;chr1:155110656-155110671	chr1:155110655-155110656;chr1:155110671-155110672		0.00	0.00	5.56	10.53	0.00	0.00	4.55	6.67	1.75	4.55	0.00	0.00	0.00	0.00	4.55	6.06	0.00	0.00	0.00	10.00	3.57	5.88	0.00	4.76	0.00	0.00	2.94	6.25	0.00	4.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.302010	0.709013
K	coord_cassette	RABGGTB	chr1	+	chr1:76255743-76256969	chr1:76255743-76255836;chr1:76255960-76256130;chr1:76256203-76256969		chr1:76255837-76255959;chr1:76256131-76256202			7.14	29.63	15.09	12.50	6.67	NA	7.14	7.14	12.12	7.02	6.56	4.55	4.08	0.00	19.44	8.75	6.41	4.55	4.76	13.33	7.14	13.64	13.33	14.71	NA	10.34	8.89	14.63	11.90	19.23	17.24	9.72	9.52	10.94	12.96	21.05	7.14	8.74	1.60	0.743365	0.870412
N	alternative_donor	ATP13A1,MATK	chr19	-	chr19:19762607-19763403	chr19:19762607-19763359		chr19:19763360-19763403	chr19:19763403-19763404		0.00	5.56	0.00	NA	6.67	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.74	1.52	0.00	0.00	0.00	NA	0.00	0.00	0.00	4.76	0.00	0.00	1.92	0.00	0.00	0.00	0.00	3.57	3.45	0.00	0.00	0.00	0.00	0.00	0.96	0.96	0.846282	0.957804
K	jcn_only_AD	CTD-2369P2.10,FDX1L,MKNK2	chr19	-	chr19:2037829-2040132	chr19:2037829-2039629					3.03	0.00	5.75	0.00	0.00	0.00	0.00	NA	15.38	NA	NA	NA	11.11	NA	33.33	NA	NA	NA	0.00	17.24	1.35	NA	9.38	NA	4.38	15.38	5.00	NA	0.00	NA	1.92	4.35	0.98	0.00	0.00	0.00	0.49	9.21	8.71	0.202064	0.657607
K	intron_retention	IFFO1	chr12	-	chr12:6660168-6664422				chr12:6660167-6660168;chr12:6664422-6664423		0.00	0.00	3.23	NA	0.00	NA	0.00	0.00	0.00	NA	9.09	NA	3.64	0.00	0.00	NA	6.12	NA	0.00	NA	NA	NA	2.56	NA	11.54	0.00	0.00	NA	5.00	NA	NA	0.00	NA	0.00	3.33	0.00	0.00	0.00	0.00	0.550539	1.000000
N	cassette	THOC2	chrX	-	chrX:122745368-122747489	chrX:122745368-122747249;chrX:122747408-122747489		chrX:122747250-122747407			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	92.86	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
K	alternative_first_exon	MRPL27,SIRT7	chr17	-	chr17:48447948-48448266;chr17:48447948-48450231	chr17:48447948-48450491	chr17:48448267-48448524;chr17:48450232-48450321	chr17:48450492-48450575			100.00	100.00	95.00	100.00	100.00	100.00	100.00	100.00	97.56	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	92.86	100.00	95.65	100.00	100.00	100.00	100.00	100.00	0.00	0.746916	0.824077
N	cassette	CLPTM1L	chr5	-	chr5:1334499-1338018	chr5:1334499-1335171;chr5:1335290-1338018		chr5:1335172-1335289			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.373901	0.709176
K	jcn_only_AA	INPP5D	chr2	+	chr2:233986968-233990457	chr2:233986968-233990454		chr2:233990455-233990457	chr2:233990457-233990458		63.64	72.00	NA	NA	NA	NA	51.95	64.86	33.33	NA	57.58	NA	53.85	52.63	70.00	NA	56.25	NA	NA	73.33	NA	NA	NA	NA	27.27	55.56	NA	NA	NA	NA	NA	NA	NA	NA	50.00	66.67	52.90	63.64	10.74	0.339387	0.663989
K	intron_retention	CXorf38	chrX	-	chrX:40490026-40495784				chrX:40490025-40490026;chrX:40495784-40495785		9.52	0.00	5.26	0.00	0.00	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.76	6.25	4.76	NA	0.00	0.00	NA	7.14	0.00	0.00	NA	2.56	5.00	0.00	0.00	4.35	7.69	4.00	0.00	5.62	5.62	0.424155	1.000000
N	jcn_only_AA	TMEM138	chr11	+	chr11:61135471-61140514;chr11:61135471-61135723;chr11:61135471-61136068;chr11:61135471-61136071	chr11:61135471-61136243		chr11:61135724-61136068;chr11:61136069-61136071;chr11:61136072-61136243;chr11:61136244-61140514	chr11:61136068-61136069;chr11:61136071-61136072;chr11:61136243-61136244;chr11:61140514-61140515		0.00	0.00	0.00	1.85	5.41	10.00	0.00	0.00	2.08	0.78	2.14	0.00	0.00	2.44	0.00	0.00	3.26	0.00	13.79	0.00	0.00	4.48	3.77	6.25	NA	3.70	0.00	2.30	4.65	0.00	0.00	7.89	0.00	1.85	1.74	0.00	0.00	0.00	0.00	0.570727	0.796382
N	intron_retention		chr22	-	chr22:50968990-50969116				chr22:50968989-50968990;chr22:50969116-50969117		86.36	100.00	100.00	100.00	100.00	100.00	NA	88.89	100.00	NA	NA	NA	NA	100.00	100.00	100.00	NA	NA	100.00	100.00	97.14	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.55	100.00	100.00	100.00	93.10	100.00	100.00	0.00	0.325721	1.000000
N	alternative_acceptor	RALGDS	chr9	-	chr9:135974150-135975654	chr9:135974889-135975654		chr9:135974150-135974888	chr9:135974149-135974150		8.89	9.72	10.20	4.17	4.35	0.00	2.56	3.70	7.69	1.33	2.63	0.00	2.63	0.00	5.00	2.41	1.67	2.50	3.45	6.90	9.52	6.74	5.43	6.19	15.38	10.42	10.29	5.66	6.12	4.29	8.11	7.46	9.09	4.24	9.21	5.63	6.27	7.50	1.24	0.767015	0.913895
K	cassette	PUF60	chr8	-	chr8:144900705-144903766	chr8:144900705-144902835;chr8:144902887-144903766		chr8:144902836-144902886			35.29	31.03	34.48	71.43	53.57	NA	42.31	47.62	44.44	47.62	47.06	60.00	48.53	68.42	52.38	69.57	51.25	59.52	NA	38.10	42.86	51.61	50.88	52.50	NA	43.48	48.15	57.14	48.65	62.50	44.44	40.00	35.29	62.86	50.00	52.00	38.80	43.96	5.16	0.292791	0.709176
N	cassette	RUFY3	chr4	+	chr4:71668701-71672232;chr4:71668777-71672232	chr4:71668777-71670064,chr4:71668701-71670064;chr4:71670134-71672232		chr4:71670065-71670133			90.91	86.21	80.00	NA	NA	NA	90.00	76.92	95.45	NA	NA	NA	NA	100.00	94.44	NA	NA	NA	88.24	92.31	85.71	100.00	70.00	86.67	70.00	84.21	85.00	NA	NA	86.67	81.82	88.89	68.42	81.25	83.33	95.65	86.21	87.56	1.35	0.255009	0.709176
N	alternative_donor	JOSD2	chr19	-	chr19:51013706-51014373;chr19:51013706-51014382	chr19:51013706-51014331		chr19:51014332-51014373;chr19:51014374-51014382	chr19:51014373-51014374;chr19:51014382-51014383		3.85	0.00	6.25	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	5.26	NA	NA	NA	0.00	0.00	0.00	0.524615	0.772559
N	alternative_donor	ARMC9	chr2	+	chr2:232156157-232160910	chr2:232160488-232160910		chr2:232156157-232160487	chr2:232156156-232156157		9.09	2.78	13.33	0.00	1.18	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	NA	0.00	1.49	0.00	0.00	NA	0.00	9.09	4.88	6.25	1.33	NA	0.00	0.00	1.92	0.00	6.67	9.09	0.00	14.29	9.52	7.14	0.00	3.33	3.33	0.257582	0.628015
K	jcn_only_AA	DGUOK,GIGYF2	chr2	+	chr2:74174034-74177753;chr2:74174034-74177727	chr2:74174034-74177711		chr2:74177712-74177727;chr2:74177728-74177753	chr2:74177727-74177728;chr2:74177753-74177754		100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	95.00	100.00	NA	95.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	96.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.845544	0.938257
N	cassette	SCAMP2	chr15	-	chr15:75137935-75142854	chr15:75137935-75140940;chr15:75140987-75142854		chr15:75140941-75140986			100.00	100.00	94.74	100.00	100.00	100.00	98.18	97.22	100.00	100.00	100.00	100.00	96.80	100.00	96.00	100.00	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.618419	0.860599
K	intron_retention	ZMYND15	chr17	+	chr17:4648074-4648164				chr17:4648073-4648074;chr17:4648164-4648165		8.51	0.00	3.33	9.52	1.45	0.00	0.00	0.00	NA	NA	0.00	NA	0.00	0.00	NA	NA	NA	NA	0.00	4.76	0.00	NA	0.00	NA	0.00	5.00	5.00	6.67	0.00	0.00	4.65	5.56	0.00	8.33	4.00	10.00	0.00	4.71	4.71	0.271089	1.000000
K	alternative_donor	STARD3	chr17	+	chr17:37818598-37819056	chr17:37818621-37819056		chr17:37818598-37818620	chr17:37818597-37818598		2.50	3.17	1.00	0.00	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	3.12	3.23	2.74	0.00	0.77	1.56	1.11	3.92	1.47	5.26	0.00	2.63	2.04	0.00	2.33	0.00	3.57	1.71	1.44	4.17	0.00	0.00	1.06	2.03	0.97	0.463300	0.720956
K	jcn_only_AA	ATP5D,ZNF333	chr19	+	chr19:1244185-1244317	chr19:1244185-1244313		chr19:1244314-1244317	chr19:1244317-1244318		98.11	100.00	100.00	100.00	100.00	100.00	98.77	100.00	97.96	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.93	100.00	100.00	96.43	100.00	93.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.867330	0.948413
N	alternative_donor	ANAPC2	chr9	-	chr9:140070290-140074632;chr9:140070290-140071500;chr9:140070290-140070454	chr9:140070290-140072519		chr9:140070455-140071500;chr9:140071501-140072519;chr9:140072520-140074632	chr9:140071500-140071501;chr9:140072519-140072520;chr9:140074632-140074633		3.57	2.38	6.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	NA	0.00	0.00	4.00	0.00	4.35	NA	3.12	5.88	0.00	0.00	2.56	6.67	4.00	7.14	3.12	0.00	3.33	0.00	4.55	4.08	2.22	5.00	5.71	6.67	2.30	4.06	1.76	0.292325	0.650093
K	intron_retention	ACADVL	chr17	+	chr17:7128204-7128275				chr17:7128203-7128204;chr17:7128275-7128276		3.77	1.95	5.77	4.18	4.49	4.17	1.25	1.83	2.04	0.47	0.00	0.00	0.50	2.27	2.40	0.41	1.57	0.48	2.94	3.75	4.64	7.01	7.19	2.44	1.92	3.97	4.93	2.72	3.41	1.98	7.84	7.59	3.22	4.23	5.86	1.90	1.94	3.76	1.82	0.313805	1.000000
K	cassette	PQBP1	chrX	+	chrX:48759320-48760008	chrX:48759320-48759509;chrX:48759662-48760008		chrX:48759510-48759661			62.50	62.41	64.52	54.26	55.46	47.67	95.12	92.00	100.00	79.07	78.72	73.68	97.44	84.00	93.62	79.59	83.67	78.26	57.14	67.65	74.65	58.33	60.81	61.11	66.07	80.00	69.23	72.73	68.66	75.56	42.00	66.67	45.87	60.34	67.19	64.06	64.24	73.83	9.59	0.952913	0.987421
N	alternative_last_exon	LILRB5	chr19	-	chr19:54755030-54755916,chr19:54755824-54755916;chr19:54721344-54755916;chr19:54754797-54755916	chr19:54755033-54755916	chr19:54721188-54721343;chr19:54753898-54754796	chr19:54754991-54755032			7.02	4.41	NA	2.63	6.18	3.85	6.32	3.57	NA	3.08	5.26	4.48	2.53	2.63	NA	3.36	3.88	4.46	4.51	5.95	0.00	9.52	6.25	6.38	0.25	0.98	0.00	2.30	3.06	1.60	2.38	4.55	1.37	1.32	3.75	0.81	3.47	3.10	-0.37	0.698747	0.811592
N	jcn_only_AD	ADAM28	chr8	+	chr8:24205893-24207376;chr8:24201102-24207376	chr8:24201098-24207376		chr8:24201098-24201101;chr8:24201102-24205892	chr8:24201097-24201098;chr8:24201101-24201102		92.41	85.92	89.10	94.44	92.16	NA	95.00	100.00	94.44	92.00	97.30	90.91	94.87	100.00	94.12	90.91	96.15	91.67	92.50	91.23	88.89	94.44	93.41	96.49	NA	90.48	86.79	88.89	100.00	94.74	91.38	84.16	93.62	96.43	93.33	95.83	93.62	91.89	-1.73	0.471836	0.721034
N	alternative_acceptor		chr19	+	chr19:50335279-50335360	chr19:50335279-50335356		chr19:50335357-50335360	chr19:50335360-50335361		93.10	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	94.29	90.00	NA	100.00	100.00	100.00	93.88	93.33	100.00	100.00	100.00	100.00	84.62	NA	92.86	87.50	90.00	100.00	97.15	-2.85	0.076913	0.585944
K	intron_retention	BDH2	chr4	-	chr4:104006620-104007636				chr4:104006619-104006620;chr4:104007636-104007637		0.00	0.00	5.80	NA	8.00	NA	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.26	0.00	0.00	NA	0.00	2.70	5.88	0.00	2.78	0.00	0.00	9.38	3.17	NA	0.00	0.00	0.00	2.80	0.00	0.00	4.35	3.12	0.00	0.00	0.00	0.960884	1.000000
K	intron_retention	TMEM120A	chr7	-	chr7:75616921-75617035				chr7:75616920-75616921;chr7:75617035-75617036		9.30	12.50	9.30	18.75	17.24	12.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.96	0.00	NA	NA	4.76	8.33	6.45	NA	6.25	NA	0.00	9.09	3.23	10.00	17.65	13.64	3.70	12.00	4.00	5.88	8.33	20.00	2.00	6.02	4.02	0.892354	1.000000
N	alternative_acceptor	P4HB	chr17	-	chr17:79804889-79805118	chr17:79804945-79805118		chr17:79804889-79804944	chr17:79804888-79804889		89.89	96.23	91.84	91.67	85.11	94.12	92.67	91.46	90.77	79.37	81.12	78.79	94.93	93.15	94.23	90.32	82.54	81.97	70.27	80.22	86.08	93.55	89.90	89.22	100.00	91.67	90.27	91.94	86.49	89.36	82.05	81.63	81.25	89.29	91.49	93.14	93.80	90.67	-3.13	0.827956	0.940678
K	intron_retention	IMPDH2	chr3	-	chr3:49062474-49062558				chr3:49062473-49062474;chr3:49062558-49062559		11.54	0.00	8.57	4.76	6.33	0.00	0.00	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	1.33	0.00	0.00	6.85	6.67	0.00	6.25	5.56	11.54	3.75	0.00	0.00	3.12	4.26	0.00	0.00	5.56	0.00	12.12	12.50	6.67	0.00	3.33	3.33	0.704207	1.000000
K	jcn_only_AA	HDAC10,MAPK12	chr22	-	chr22:50688133-50688288	chr22:50688149-50688288		chr22:50688133-50688148	chr22:50688132-50688133		0.00	0.00	0.00	NA	NA	NA	0.00	0.00	NA	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	NA	6.67	0.00	NA	7.14	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.391002	0.663989
N	cassette	WDR33	chr2	-	chr2:128467431-128474728	chr2:128467431-128471156;chr2:128471596-128474728		chr2:128471157-128471595			100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	90.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	81.82	100.00	100.00	100.00	100.00	100.00	100.00	92.45	100.00	100.00	92.59	90.00	100.00	100.00	0.00	0.363217	0.709176
N	cassette	GMFG	chr19	-	chr19:39820267-39826074;chr19:39823767-39826613;chr19:39808999-39826613;chr19:39823767-39826074;chr19:39820267-39826613	chr19:39820267-39825900,chr19:39808999-39825900,chr19:39823767-39825900;chr19:39825951-39826074,chr19:39825951-39826613		chr19:39825901-39825950			97.40	95.77	95.58	96.93	96.03	96.84	97.98	95.34	94.62	97.60	98.51	99.35	96.77	96.47	93.94	95.93	97.87	100.00	96.20	95.91	93.52	96.85	95.51	97.75	94.43	96.53	96.64	97.86	96.93	98.04	95.24	93.23	96.74	96.97	97.62	95.52	96.47	96.19	-0.28	0.783348	0.935383
K	intron_retention	SGK1	chr6	-	chr6:134491574-134491963				chr6:134491573-134491574;chr6:134491963-134491964		13.51	6.45	8.33	0.00	7.58	NA	0.94	0.00	NA	2.52	1.27	NA	3.60	0.00	NA	1.90	2.80	NA	7.14	13.21	7.14	11.50	8.80	17.86	NA	10.00	NA	14.29	7.30	NA	18.82	11.76	14.29	11.89	11.90	8.70	6.45	11.61	5.16	0.709148	1.000000
K	intron_retention		chr11	+	chr11:71710066-71710972				chr11:71710065-71710066;chr11:71710972-71710973		17.07	13.73	23.91	NA	10.00	NA	5.49	6.87	11.21	4.58	4.47	3.66	5.00	8.75	21.21	6.67	6.19	4.11	8.33	4.26	14.29	1.47	5.73	6.56	NA	9.43	13.33	9.38	10.11	12.73	0.00	10.53	10.00	4.76	9.28	9.15	8.33	7.81	-0.52	0.992890	1.000000
K	jcn_only_AA	NDUFA2	chr5	-	chr5:140025264-140026840;chr5:140018842-140026840	chr5:140025311-140026840		chr5:140018842-140025263;chr5:140025264-140025310	chr5:140018841-140018842;chr5:140025263-140025264		6.52	2.54	3.83	4.91	4.07	3.09	6.36	7.46	11.54	7.69	13.59	9.72	5.36	5.00	5.94	6.47	12.35	6.38	5.42	6.48	6.30	5.71	6.32	7.04	2.01	5.97	5.65	2.53	4.12	3.25	5.17	5.39	4.53	9.28	3.21	7.26	4.95	6.22	1.28	0.064441	0.663989
N	coord_cassette	ETFA	chr15	-	chr15:76580287-76587931	chr15:76580287-76584771;chr15:76584855-76584959;chr15:76585042-76587931		chr15:76584772-76584854;chr15:76584960-76585041			100.00	100.00	98.36	100.00	100.00	NA	98.21	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	93.33	100.00	100.00	100.00	100.00	100.00	0.00	0.260446	0.643829
N	intron_retention		chr19	-	chr19:36398483-36399076				chr19:36398482-36398483;chr19:36399076-36399077		12.67	9.41	16.98	24.27	24.79	24.62	16.33	23.35	24.42	18.85	23.62	18.10	17.63	30.48	33.65	13.01	27.45	13.76	10.00	11.41	13.95	20.00	23.17	20.87	8.59	14.47	14.37	29.61	22.73	20.18	14.98	12.34	7.56	19.17	18.86	21.99	9.71	14.73	5.02	0.299528	1.000000
K	intron_retention		chr12	-	chr12:57638995-57640586				chr12:57638994-57638995;chr12:57640586-57640587		4.00	0.00	6.25	0.00	0.00	0.00	1.28	2.51	1.49	0.00	0.00	0.00	1.37	1.90	2.27	0.00	0.00	0.00	3.70	4.69	3.17	0.00	2.56	0.00	4.84	2.31	0.00	0.00	1.67	3.70	1.75	0.00	5.56	3.70	3.03	5.26	2.54	2.41	-0.12	0.744201	1.000000
K	intron_retention	OAZ1	chr19	+	chr19:2269744-2271389				chr19:2269743-2269744;chr19:2271389-2271390		38.24	32.14	44.44	NA	33.33	0.00	0.00	35.71	23.08	42.86	50.00	NA	40.00	25.00	40.00	0.00	37.50	NA	27.27	30.00	16.00	63.64	31.58	35.71	26.32	31.58	37.04	NA	31.58	NA	22.58	26.92	27.03	26.32	28.57	20.00	27.15	30.79	3.64	0.733512	1.000000
K	intron_retention		chr1	-	chr1:111662582-111663137				chr1:111662581-111662582;chr1:111663137-111663138		2.65	0.00	4.07	0.00	4.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	1.98	1.89	3.03	5.56	3.57	0.00	3.81	3.79	2.86	2.50	2.13	2.63	3.41	1.52	2.27	4.84	6.45	0.00	2.30	2.30	0.615882	1.000000
K	intron_retention	PARP10	chr8	-	chr8:145057980-145058175				chr8:145057979-145057980;chr8:145058175-145058176		36.69	34.15	40.64	29.63	30.77	36.07	0.00	4.55	4.82	12.50	3.57	12.07	2.50	4.30	8.82	17.39	11.11	16.07	30.00	40.00	45.80	47.37	33.33	45.45	17.95	25.12	36.91	40.68	18.75	32.87	56.76	58.37	53.57	57.69	42.42	54.50	23.98	30.91	6.93	0.914295	1.000000
K	alternative_donor	COL8A2,PYCR2,RP4-559A3.7	chr1	-	chr1:226111472-226111743	chr1:226111472-226111610		chr1:226111611-226111743	chr1:226111743-226111744		0.00	0.00	1.64	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	2.94	0.00	0.00	0.00	0.00	0.00	0.00	7.50	0.00	NA	5.00	0.00	0.00	4.00	0.00	0.00	2.22	NA	0.00	4.17	0.00	0.00	0.00	0.00	0.363217	0.650093
N	jcn_only_AD	MAPK1	chr22	-	chr22:22123610-22127161	chr22:22123610-22126937		chr22:22126938-22127161	chr22:22127161-22127162		5.17	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.324074	0.657607
N	alternative_acceptor	PTOV1	chr19	+	chr19:50361911-50362345;chr19:50361911-50363242;chr19:50361911-50363350	chr19:50361911-50363312		chr19:50362346-50363242;chr19:50363243-50363312;chr19:50363313-50363350	chr19:50363242-50363243;chr19:50363312-50363313;chr19:50363350-50363351		0.00	0.00	2.90	2.04	1.75	3.26	5.26	6.25	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.00	2.90	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.675337	0.880186
N	jcn_only_AD	MYO1G	chr7	-	chr7:45014827-45015074;chr7:45014827-45015078;chr7:45014827-45015159	chr7:45014827-45015082		chr7:45015075-45015078;chr7:45015079-45015082;chr7:45015083-45015159	chr7:45015078-45015079;chr7:45015082-45015083;chr7:45015159-45015160		94.64	100.00	98.01	NA	NA	NA	100.00	99.78	98.96	98.44	100.00	100.00	100.00	99.49	98.16	100.00	100.00	98.57	NA	96.85	100.00	95.00	100.00	94.83	100.00	98.69	97.70	98.57	100.00	100.00	96.61	95.24	NA	96.30	100.00	97.56	100.00	97.77	-2.23	0.035358	0.450435
N	cassette	MGAT4B	chr5	-	chr5:179227260-179227906	chr5:179227260-179227483;chr5:179227598-179227906		chr5:179227484-179227597			92.31	84.21	87.27	NA	83.78	NA	100.00	100.00	100.00	96.97	100.00	100.00	100.00	100.00	100.00	100.00	98.21	100.00	100.00	88.24	100.00	87.50	89.06	87.50	NA	100.00	94.59	96.30	96.83	100.00	92.86	100.00	100.00	92.31	91.67	88.89	100.00	96.43	-3.57	0.746130	0.917222
N	cassette	EXOSC9	chr4	+	chr4:122735203-122737926	chr4:122735203-122737523;chr4:122737603-122737926		chr4:122737524-122737602			100.00	100.00	100.00	100.00	100.00	99.24	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.28	100.00	100.00	100.00	95.35	100.00	100.00	94.74	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.15	96.36	95.45	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.225014	0.709176
K	intron_retention	NR1D1	chr17	-	chr17:38249536-38250164				chr17:38249535-38249536;chr17:38250164-38250165		24.00	34.38	26.67	NA	NA	NA	13.64	NA	NA	8.33	0.00	NA	16.67	NA	NA	NA	NA	NA	26.09	16.00	24.00	NA	NA	NA	0.00	17.65	NA	NA	NA	NA	15.46	15.00	23.26	NA	NA	NA	19.97	16.82	-3.14	0.394754	1.000000
N	cassette	ATG7	chr3	+	chr3:11383754-11399891	chr3:11383754-11389350;chr3:11389510-11399891		chr3:11389351-11389509			92.31	100.00	85.71	NA	100.00	NA	94.74	96.15	100.00	93.33	95.24	100.00	100.00	92.31	100.00	100.00	95.35	100.00	100.00	89.47	90.48	100.00	96.77	100.00	100.00	80.00	92.31	100.00	100.00	84.62	100.00	85.71	100.00	100.00	100.00	100.00	100.00	92.31	-7.69	0.043743	0.523776
N	alternative_donor	PFKL	chr21	+	chr21:45742898-45743648	chr21:45742933-45743648		chr21:45742898-45742932	chr21:45742897-45742898		95.24	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	87.50	100.00	100.00	94.12	100.00	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	92.00	92.50	100.00	100.00	100.00	0.00	0.224414	0.597397
K	intron_retention	POLG	chr15	-	chr15:89860768-89861771				chr15:89860767-89860768;chr15:89861771-89861772		6.45	7.14	16.67	6.06	4.76	13.64	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	7.41	5.56	0.00	0.00	10.00	16.00	10.00	14.29	17.86	16.28	0.00	12.50	18.18	6.45	13.51	5.88	12.50	13.51	7.32	10.42	19.57	13.56	4.71	9.47	4.77	0.633385	1.000000
N	jcn_only_AA	DGKZ	chr11	+	chr11:46400051-46400224;chr11:46400051-46400546;chr11:46400051-46400540	chr11:46400051-46400443		chr11:46400225-46400443;chr11:46400444-46400540;chr11:46400541-46400546	chr11:46400443-46400444;chr11:46400540-46400541;chr11:46400546-46400547		0.00	0.00	1.75	5.26	6.38	0.00	1.28	0.00	0.00	NA	0.00	NA	0.00	0.00	3.70	0.00	0.00	NA	2.44	2.63	2.86	0.00	4.17	0.00	0.00	4.35	1.37	0.00	1.85	NA	0.00	0.00	0.00	4.00	2.78	0.00	0.00	0.00	0.00	0.552780	0.785956
K	alternative_acceptor	SDR39U1	chr14	-	chr14:24909808-24909988;chr14:24909699-24909988	chr14:24909615-24909988		chr14:24909615-24909698;chr14:24909699-24909807	chr14:24909614-24909615;chr14:24909698-24909699		19.35	18.18	10.00	16.67	8.82	NA	4.00	0.00	0.00	6.67	5.88	0.00	8.82	0.00	0.00	14.29	8.00	0.00	0.00	5.26	7.14	0.00	8.11	0.00	0.00	13.04	0.00	5.00	0.00	3.85	5.00	10.26	0.00	13.04	0.00	0.00	2.00	5.13	3.13	0.662214	0.877732
K	intron_retention	NDUFV1	chr11	+	chr11:67378679-67378873				chr11:67378678-67378679;chr11:67378873-67378874		8.11	4.35	6.78	0.00	1.28	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	2.64	3.12	1.27	1.85	2.61	0.00	1.94	0.00	7.14	0.00	1.48	0.00	5.26	7.14	2.76	2.17	2.25	2.41	2.29	3.12	0.83	0.619783	1.000000
K	intron_retention	CPSF3L	chr1	-	chr1:1248330-1248414				chr1:1248329-1248330;chr1:1248414-1248415		8.33	3.30	5.88	4.65	1.89	3.23	0.00	0.00	0.00	0.00	0.00	0.00	4.17	0.00	2.56	4.26	0.00	0.00	5.08	4.17	1.37	4.88	3.64	3.45	4.65	0.00	4.65	0.00	3.33	2.56	10.71	6.58	6.80	3.12	7.32	4.26	4.41	2.08	-2.33	0.966595	1.000000
N	alternative_acceptor	TBC1D2	chr9	-	chr9:100982536-100983114;chr9:100979480-100983114	chr9:100975501-100983114		chr9:100975501-100979479;chr9:100979480-100982535	chr9:100975500-100975501;chr9:100979479-100979480		95.65	90.91	93.48	NA	100.00	NA	98.84	95.24	100.00	95.12	98.00	NA	95.35	93.10	93.33	95.83	95.74	NA	NA	95.45	100.00	90.48	94.57	81.82	88.24	92.16	94.87	92.31	96.74	NA	97.22	96.08	100.00	91.49	92.86	88.24	95.35	95.34	-0.00	0.956869	0.990505
K	intron_retention	SRSF2	chr17	-	chr17:74731241-74732235				chr17:74731240-74731241;chr17:74732235-74732236		20.21	16.39	26.14	5.19	9.41	6.25	5.45	9.30	6.06	0.82	2.42	1.24	4.89	11.49	13.24	2.27	2.71	0.73	9.09	27.37	20.00	18.69	20.24	17.70	14.81	27.55	18.84	8.09	17.39	9.89	32.99	29.32	22.22	13.16	17.00	13.85	11.95	23.79	11.84	0.236198	1.000000
N	cassette	TAF12	chr1	-	chr1:28939874-28948425	chr1:28939874-28944464;chr1:28944543-28948425		chr1:28944465-28944542			100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	94.12	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.18	88.89	100.00	93.75	95.56	93.10	100.00	100.00	0.00	0.363217	0.709176
K	cassette	RPLP0	chr12	-	chr12:120635266-120636656	chr12:120635266-120636356;chr12:120636574-120636656		chr12:120636357-120636573			96.00	95.09	98.28	93.26	94.67	93.41	96.45	98.08	97.17	96.77	97.15	97.03	97.95	96.08	98.67	97.27	99.12	98.71	95.27	95.74	91.15	96.83	95.78	95.60	95.51	100.00	97.24	96.58	95.76	94.61	91.43	96.88	95.33	94.85	93.83	94.13	95.42	96.04	0.62	0.824992	0.941968
K	cassette	MAP4K4	chr2	+	chr2:102477449-102481391;chr2:102476327-102481391	chr2:102477449-102480282,chr2:102476327-102480282;chr2:102480514-102481391		chr2:102480283-102480513			0.00	0.00	0.00	NA	NA	NA	0.00	0.00	4.55	2.27	0.00	4.78	0.00	7.69	0.00	1.11	0.00	5.54	NA	0.00	NA	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	5.36	0.00	0.00	NA	0.00	0.00	1.01	0.00	0.00	0.00	0.363217	0.709176
K	alternative_acceptor	PHF23	chr17	-	chr17:7140082-7140703;chr17:7140087-7140703	chr17:7139886-7140703		chr17:7139886-7140081;chr17:7140082-7140086	chr17:7139885-7139886;chr17:7140081-7140082		10.20	0.00	6.52	NA	17.24	NA	9.68	5.66	10.81	18.37	17.24	18.18	12.00	2.17	8.82	9.30	15.25	18.18	NA	11.11	21.05	18.75	15.91	NA	0.00	9.80	8.70	16.67	19.44	NA	6.45	10.91	16.67	6.25	13.95	13.33	9.68	8.12	-1.55	0.977832	0.994346
K	alternative_acceptor	RCE1	chr11	+	chr11:66611836-66612339	chr11:66611836-66612167		chr11:66612168-66612339	chr11:66612339-66612340		0.00	0.00	5.56	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	3.70	0.00	9.09	0.00	11.11	NA	0.00	10.00	0.00	3.70	NA	0.00	9.52	0.00	0.00	0.00	0.00	0.391002	0.709013
K	cassette	ACAA1	chr3	-	chr3:38167373-38168000	chr3:38167373-38167652;chr3:38167833-38168000		chr3:38167653-38167832			46.48	29.75	35.29	36.84	29.25	19.67	77.78	81.13	77.11	64.15	69.57	71.11	75.41	72.73	74.07	67.44	59.26	63.33	28.89	35.00	57.67	38.71	35.53	29.41	28.12	50.00	55.10	55.88	41.79	43.40	35.23	41.38	23.85	30.43	33.77	32.17	29.32	48.24	18.92	0.485311	0.774333
K	intron_retention	MKNK2	chr19	-	chr19:2037829-2040132				chr19:2037828-2037829;chr19:2040132-2040133		32.63	31.33	37.40	39.53	40.00	38.10	45.45	50.00	54.17	NA	45.45	NA	27.27	NA	41.18	NA	60.00	NA	32.47	31.43	29.81	35.71	35.56	NA	30.45	56.00	36.67	NA	23.68	45.45	40.70	37.85	29.27	44.12	35.29	35.29	30.89	40.70	9.81	0.443101	1.000000
N	cassette	DGUOK	chr2	+	chr2:74174034-74185272;chr2:74174034-74184251	chr2:74174034-74177727;chr2:74177860-74184251,chr2:74177860-74185272		chr2:74177728-74177859			19.75	18.03	16.98	29.17	30.28	12.90	25.81	31.82	23.40	38.89	28.57	28.57	35.56	33.33	21.74	31.58	29.03	33.33	13.40	21.82	15.00	36.36	24.00	33.33	15.22	25.00	22.08	42.11	31.82	36.84	12.50	15.84	16.67	29.27	24.53	20.41	17.35	23.41	6.06	0.502907	0.786576
K	intron_retention	TNFSF12-TNFSF13	chr17	+	chr17:7460220-7460415				chr17:7460219-7460220;chr17:7460415-7460416		0.00	3.39	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	1.27	0.00	7.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.594508	1.000000
N	alternative_acceptor	GPR137B,KCNC4	chr1	+	chr1:236368551-236371360;chr1:236368551-236371349;chr1:236368551-236376613	chr1:236368551-236370432		chr1:236370433-236371349;chr1:236371350-236371360;chr1:236371361-236376613	chr1:236371349-236371350;chr1:236371360-236371361;chr1:236376613-236376614		10.87	0.00	9.09	0.00	2.56	2.04	6.90	9.38	10.00	5.81	4.08	5.00	8.33	11.11	8.51	6.85	5.88	6.00	9.09	9.68	3.57	8.57	8.11	6.67	6.25	33.33	22.92	6.90	11.43	6.38	10.53	11.54	0.00	6.90	8.33	7.46	6.58	10.70	4.12	0.068593	0.584083
K	cassette	MLEC	chr12	+	chr12:121132804-121134118	chr12:121132804-121132897;chr12:121132956-121134118		chr12:121132898-121132955			100.00	100.00	100.00	100.00	100.00	96.15	98.17	94.12	100.00	100.00	100.00	97.30	100.00	100.00	100.00	95.00	99.07	100.00	97.50	100.00	100.00	100.00	95.00	91.67	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.818420	0.940342
K	intron_retention		chr7	+	chr7:23300393-23306135				chr7:23300392-23300393;chr7:23306135-23306136		3.70	6.70	6.13	1.82	3.28	0.00	3.08	4.99	3.56	3.43	3.59	3.63	3.52	5.19	4.67	3.09	3.77	3.78	5.97	3.96	4.92	3.68	4.19	4.03	8.57	4.11	4.30	3.92	4.09	3.90	5.06	3.99	4.49	3.34	3.63	2.96	5.23	4.55	-0.68	0.591894	1.000000
N	alternative_donor	ARRDC1	chr9	+	chr9:140500288-140507347	chr9:140501133-140507347		chr9:140500288-140501132	chr9:140500287-140500288		15.38	16.00	16.67	NA	NA	NA	0.00	3.33	0.00	NA	0.00	NA	2.70	0.00	3.45	6.25	10.00	NA	NA	9.09	NA	NA	3.45	NA	38.46	14.29	10.00	NA	0.00	NA	NA	7.69	NA	NA	7.14	NA	9.35	9.09	-0.26	0.563895	0.794121
K	jcn_only_AA	DUS1L	chr17	-	chr17:80022078-80022698	chr17:80022111-80022698		chr17:80022078-80022110	chr17:80022077-80022078		100.00	91.53	100.00	91.67	94.29	NA	98.00	100.00	95.00	94.12	98.11	90.48	95.16	NA	96.77	97.56	98.51	100.00	91.30	100.00	96.15	86.96	96.77	93.33	90.91	NA	96.00	96.30	96.43	90.91	85.71	93.33	94.74	100.00	100.00	95.24	93.13	100.00	6.87	0.498120	0.752925
K	jcn_only_AA	SARAF	chr8	-	chr8:29923584-29924292	chr8:29923656-29924292		chr8:29923584-29923655	chr8:29923583-29923584		87.47	84.92	88.45	90.48	88.17	80.00	88.83	89.86	86.49	85.61	85.42	84.85	88.28	89.07	87.08	90.20	87.98	85.35	86.05	91.67	92.52	92.16	87.24	89.84	84.85	86.76	88.18	86.67	89.68	88.19	90.08	93.20	89.17	92.54	91.26	90.66	87.16	89.47	2.30	0.079432	0.663989
K	coord_cassette	MRPL52	chr14	+	chr14:23299464-23303380	chr14:23299464-23300172;chr14:23300247-23302626;chr14:23302692-23303380		chr14:23300173-23300246;chr14:23302627-23302691			34.78	40.74	37.50	22.22	40.00	36.84	NA	NA	NA	NA	NA	NA	NA	NA	NA	41.67	38.46	NA	28.00	20.83	29.41	40.00	50.00	NA	10.00	40.00	15.38	NA	30.00	NA	40.00	36.36	30.23	NA	33.33	NA	29.12	37.39	8.27	0.430833	0.674674
N	alternative_acceptor	RP11-343C2.11,VPS4A	chr16	+	chr16:69355174-69356433;chr16:69355174-69356462	chr16:69355174-69356446		chr16:69356434-69356446;chr16:69356447-69356462	chr16:69356446-69356447;chr16:69356462-69356463		1.23	6.25	1.37	0.00	2.53	0.00	1.12	0.00	1.15	0.00	0.94	0.00	1.11	0.00	1.32	0.74	0.93	0.00	6.67	1.37	3.95	1.35	0.93	1.59	8.11	0.00	2.41	1.64	2.44	0.00	1.79	2.38	6.90	0.00	1.82	1.67	6.46	0.61	-5.84	0.017937	0.508745
N	alternative_acceptor	CCS	chr11	+	chr11:66368021-66372624;chr11:66368021-66372628	chr11:66368021-66372809		chr11:66372625-66372628;chr11:66372629-66372809	chr11:66372628-66372629;chr11:66372809-66372810		96.49	96.08	93.48	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	NA	100.00	100.00	96.47	100.00	100.00	NA	97.69	96.77	94.37	93.33	100.00	100.00	96.88	94.92	97.39	100.00	96.88	93.10	98.84	96.88	-1.97	0.651634	0.872539
K	intron_retention	ZNF335	chr20	-	chr20:44577720-44577808				chr20:44577719-44577720;chr20:44577808-44577809		3.70	0.00	6.06	0.00	2.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	6.25	0.00	0.00	0.00	0.00	0.00	5.00	2.70	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.563954	1.000000
K	alternative_last_exon	RPS3	chr11	+	chr11:75112778-75115803	chr11:75112778-75113395,chr11:75112778-75113347	chr11:75115804-75115912	chr11:75113396-75113490			88.24	83.28	91.81	83.64	84.32	76.32	91.81	93.00	92.06	88.81	89.94	88.38	92.92	94.44	93.41	91.42	90.62	90.36	88.03	92.26	88.46	89.17	88.32	88.78	71.29	89.71	88.24	89.55	88.64	85.45	93.30	91.16	86.42	90.73	88.03	88.84	87.22	92.63	5.41	0.114583	0.333781
N	alternative_donor		chr19	-	chr19:55604031-55604180	chr19:55604031-55604150		chr19:55604151-55604180	chr19:55604180-55604181		90.91	100.00	93.55	NA	90.91	NA	100.00	94.12	92.31	NA	94.74	NA	100.00	95.00	86.67	100.00	100.00	NA	100.00	87.18	100.00	100.00	97.44	100.00	100.00	100.00	94.12	100.00	96.55	100.00	89.66	92.11	100.00	100.00	100.00	100.00	100.00	92.52	-7.48	0.011746	0.225202
N	jcn_only_AD	MARCH5	chr10	+	chr10:94109545-94110847	chr10:94109595-94110847		chr10:94109545-94109594	chr10:94109544-94109545		84.75	70.00	81.82	NA	80.00	90.91	100.00	94.55	100.00	100.00	100.00	100.00	96.88	100.00	100.00	100.00	100.00	100.00	100.00	86.36	94.74	92.00	88.24	88.24	NA	78.69	83.67	100.00	91.67	87.88	63.41	74.55	77.78	89.83	87.04	91.80	96.88	85.56	-11.32	0.612657	0.809875
K	intron_retention	GLMP	chr1	-	chr1:156264357-156264549				chr1:156264356-156264357;chr1:156264549-156264550		5.80	25.00	5.17	0.00	2.38	NA	0.31	0.00	0.00	0.00	0.00	0.00	0.40	0.00	0.00	0.00	0.00	0.00	0.00	5.17	0.00	0.00	3.16	0.00	0.00	6.17	9.80	2.67	4.02	0.00	4.55	6.52	10.00	3.12	3.96	1.65	0.35	4.86	4.50	0.926606	1.000000
K	alternative_first_exon	ARHGEF2	chr1	-	chr1:155939092-155939759,chr1:155939092-155939943,chr1:155939092-155948011,chr1:155939092-155948703;chr1:155939092-155948155;chr1:155939092-155947857	chr1:155939092-155952897	chr1:155948156-155948318;chr1:155947858-155947951	chr1:155952898-155952991			2.50	0.00	6.32	NA	NA	NA	14.10	5.56	8.85	10.59	6.41	3.61	6.10	6.92	1.48	4.17	4.26	0.68	NA	6.98	NA	7.69	8.00	8.33	0.00	11.11	6.12	16.67	7.14	0.00	7.69	11.11	NA	10.81	12.20	7.23	3.05	6.95	3.90	0.649422	0.753895
N	cassette	NDUFS2	chr1	+	chr1:161179979-161180380;chr1:161179722-161180380	chr1:161179722-161180093,chr1:161179979-161180093;chr1:161180180-161180380		chr1:161180094-161180179			83.82	100.00	83.78	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	88.33	95.00	100.00	100.00	96.30	100.00	91.38	92.47	100.00	100.00	100.00	77.08	70.00	90.62	100.00	95.00	92.06	100.00	89.85	-10.15	0.135114	0.709176
K	alternative_acceptor	FCHO1,WDR18	chr19	+	chr19:17898656-17899092	chr19:17898656-17899078		chr19:17899079-17899092	chr19:17899092-17899093		0.00	1.75	5.88	NA	5.56	NA	NA	NA	0.00	NA	NA	NA	NA	NA	0.00	NA	NA	NA	3.28	0.00	2.33	NA	0.00	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	3.03	NA	NA	NA	2.39	0.00	-2.39	0.074762	0.585944
N	alternative_acceptor		chr3	+	chr3:50098981-50099068;chr3:50098981-50099111	chr3:50098981-50099394		chr3:50099069-50099111;chr3:50099112-50099394	chr3:50099111-50099112;chr3:50099394-50099395		62.50	25.71	55.56	35.71	50.00	NA	NA	NA	84.62	100.00	78.95	NA	73.68	69.23	54.55	70.00	84.62	NA	57.89	65.00	54.29	52.94	68.89	45.00	40.00	50.00	52.00	50.00	57.14	47.62	67.86	58.49	62.96	41.03	46.94	34.15	57.89	65.00	7.11	0.288418	0.709013
N	jcn_only_AA	C19orf66	chr19	+	chr19:10200372-10200604;chr19:10200372-10200573;chr19:10200372-10200636	chr19:10200372-10200577		chr19:10200574-10200577;chr19:10200578-10200604;chr19:10200605-10200636	chr19:10200577-10200578;chr19:10200604-10200605;chr19:10200636-10200637		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	5.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.56	0.62	0.00	0.00	2.00	0.00	0.85	0.00	0.31	0.31	0.101939	0.663989
N	alternative_acceptor	BAK1	chr6	-	chr6:33540284-33541810;chr6:33541685-33541810	chr6:33535804-33541810		chr6:33535804-33540283;chr6:33540284-33541684	chr6:33535803-33535804;chr6:33540283-33540284		0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	NA	20.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.709013
N	cassette	PANK2	chr20	+	chr20:3893282-3903890	chr20:3893282-3897573;chr20:3897698-3903890		chr20:3897574-3897697			100.00	100.00	94.44	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.00	100.00	100.00	100.00	95.65	NA	100.00	100.00	NA	100.00	100.00	NA	94.12	100.00	100.00	100.00	100.00	100.00	93.10	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.184216	0.709176
K	intron_retention	ERVK3-1	chr19	+	chr19:58817583-58823531				chr19:58817582-58817583;chr19:58823531-58823532		7.41	10.00	15.38	11.11	1.82	0.00	0.00	0.00	0.00	2.13	2.67	0.00	3.70	3.12	6.67	3.28	1.92	0.00	0.00	16.67	9.68	7.14	7.02	23.81	NA	17.39	6.67	2.63	7.27	8.00	5.26	16.13	6.67	5.77	6.06	13.51	3.70	6.33	2.63	0.857491	1.000000
K	alternative_last_exon	RQCD1	chr2	+	chr2:219457431-219458891;chr2:219457431-219458830	chr2:219457431-219458250	chr2:219458831-219461803	chr2:219458251-219458565			29.03	21.21	24.62	31.58	26.09	31.58	12.50	19.05	17.24	12.28	17.24	21.74	15.69	34.78	15.79	19.40	15.62	17.39	26.67	31.03	23.26	23.68	16.36	17.07	14.29	25.00	23.21	26.47	20.00	25.71	34.78	29.41	26.47	28.79	22.81	20.00	18.45	30.03	11.58	0.023762	0.210459
N	alternative_donor	HMGN3	chr6	-	chr6:79911444-79911785;chr6:79911444-79911810;chr6:79911444-79911772;chr6:79911444-79912033	chr6:79911444-79911992		chr6:79911773-79911785;chr6:79911786-79911810;chr6:79911811-79911992;chr6:79911993-79912033	chr6:79911785-79911786;chr6:79911810-79911811;chr6:79911992-79911993;chr6:79912033-79912034		21.43	21.48	30.56	34.15	26.73	29.41	23.23	31.82	44.23	36.79	35.25	39.32	27.78	47.06	37.23	32.86	35.63	31.43	22.58	36.36	25.81	24.44	25.00	25.00	29.21	43.75	40.38	23.33	29.66	29.36	46.15	29.79	21.25	30.19	32.81	27.85	22.91	40.05	17.15	0.019386	0.271216
N	jcn_only_AA	ZNF529-AS1	chr19	+	chr19:7987233-7987368	chr19:7987233-7987329		chr19:7987330-7987368	chr19:7987368-7987369		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	96.88	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	94.74	100.00	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	97.96	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.663989
N	cassette	BRD8	chr5	-	chr5:137496758-137498818;chr5:137497554-137498818	chr5:137497554-137497742,chr5:137496758-137497742;chr5:137497836-137498818		chr5:137497743-137497835			92.59	100.00	100.00	NA	100.00	NA	100.00	NA	100.00	NA	NA	NA	100.00	NA	100.00	NA	NA	NA	NA	100.00	90.48	NA	100.00	NA	NA	100.00	94.74	NA	NA	100.00	92.00	95.16	100.00	100.00	100.00	100.00	100.00	96.30	-3.70	0.182156	0.709176
K	alternative_acceptor	ITFG1	chr16	-	chr16:47192846-47195660	chr16:47192902-47195660		chr16:47192846-47192901	chr16:47192845-47192846		96.36	94.55	98.59	100.00	93.18	94.44	98.08	100.00	97.37	100.00	95.56	96.88	96.00	95.65	100.00	94.12	92.11	96.00	88.64	95.35	92.65	94.44	100.00	96.15	100.00	95.65	91.25	92.86	90.00	93.33	91.89	97.18	91.23	94.12	92.68	97.87	95.28	95.65	0.38	0.612834	0.853341
K	alternative_donor	MKRN1	chr7	-	chr7:140155034-140155656	chr7:140155034-140155589		chr7:140155590-140155656	chr7:140155656-140155657		76.67	62.50	76.92	NA	NA	NA	100.00	95.56	95.92	100.00	95.35	100.00	90.91	100.00	95.35	100.00	100.00	100.00	NA	68.75	76.92	NA	91.30	100.00	53.85	94.74	90.00	NA	100.00	100.00	62.96	63.27	75.00	85.00	86.96	75.76	75.00	85.70	10.70	0.551480	0.783269
N	jcn_only_AA		chr14	+	chr14:100608131-100608344;chr14:100608131-100610044;chr14:100608131-100610350	chr14:100608131-100610037		chr14:100608345-100610037;chr14:100610038-100610044;chr14:100610045-100610350	chr14:100610037-100610038;chr14:100610044-100610045;chr14:100610350-100610351		97.14	99.60	NA	92.86	100.00	92.86	100.00	100.00	100.00	100.00	98.67	100.00	100.00	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.25	100.00	100.00	100.00	100.00	100.00	100.00	NA	99.17	100.00	100.00	100.00	99.80	100.00	0.20	0.972130	0.989902
K	jcn_only_AA	CSF3R	chr1	-	chr1:36932429-36932830	chr1:36932510-36932830		chr1:36932429-36932509	chr1:36932428-36932429		0.00	3.57	6.90	13.33	0.00	NA	2.44	1.89	3.33	0.00	5.45	6.82	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	0.00	12.50	0.00	0.00	12.50	3.23	4.08	6.38	0.00	4.17	6.25	0.00	0.00	0.00	3.00	0.00	-3.00	0.068413	0.663989
K	intron_retention	TRPV2	chr17	+	chr17:16337013-16338203				chr17:16337012-16337013;chr17:16338203-16338204		4.95	6.04	5.88	7.27	3.51	2.54	0.65	0.00	0.00	0.00	0.00	0.00	0.80	1.12	1.52	1.11	1.01	0.00	2.34	4.40	1.69	2.44	8.54	4.65	1.90	5.15	9.30	5.00	6.45	2.59	0.97	4.92	2.41	12.12	12.12	6.48	2.12	2.76	0.64	0.847818	1.000000
N	cassette	MYO18A	chr17	-	chr17:27422078-27424240	chr17:27422078-27423778;chr17:27423934-27424240		chr17:27423779-27423933			82.35	100.00	89.66	NA	NA	NA	100.00	93.94	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	NA	87.50	NA	100.00	93.55	100.00	100.00	86.67	78.95	NA	90.00	NA	87.50	92.50	NA	90.00	95.00	92.59	100.00	87.50	-12.50	0.009966	0.314700
K	intron_retention		chr16	+	chr16:30196729-30197918				chr16:30196728-30196729;chr16:30197918-30197919		4.48	5.05	12.15	9.09	7.59	NA	1.43	1.06	0.00	0.00	1.79	0.00	1.70	0.98	2.17	0.00	2.19	0.00	7.53	4.60	3.77	0.00	9.23	0.00	12.87	1.23	6.98	NA	7.61	0.00	4.17	5.88	6.60	3.03	5.88	0.00	5.82	2.70	-3.12	0.650926	1.000000
K	intron_retention	PPP1R9B	chr17	-	chr17:48217594-48218633				chr17:48217593-48217594;chr17:48218633-48218634		5.41	2.65	6.19	NA	0.00	NA	0.00	1.72	0.78	1.54	1.38	0.00	1.82	0.00	2.47	0.00	1.63	0.00	6.90	7.32	4.76	5.56	4.67	0.00	3.15	4.00	5.48	3.57	1.45	0.00	0.00	4.00	0.00	2.70	5.45	3.33	2.23	2.86	0.62	0.700387	1.000000
K	alternative_donor	EHD1	chr11	-	chr11:64622330-64622793	chr11:64622330-64622485		chr11:64622486-64622793	chr11:64622793-64622794		3.45	0.00	2.67	1.02	0.00	0.44	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.00	0.00	0.11	0.00	0.06	8.33	3.64	1.10	1.61	2.63	1.11	NA	0.65	1.46	0.71	0.00	0.54	3.17	2.50	0.00	1.28	0.57	0.95	0.00	1.91	1.91	0.936154	0.984606
N	jcn_only_AA	OAS1	chr12	+	chr12:113346630-113348840;chr12:113346630-113348855	chr12:113346630-113348902		chr12:113348841-113348855;chr12:113348856-113348902	chr12:113348855-113348856;chr12:113348902-113348903		5.85	0.00	1.85	0.00	NA	9.09	6.72	10.24	13.25	10.53	12.00	7.25	6.98	8.04	8.77	6.85	10.87	4.98	NA	6.81	10.87	6.67	0.00	6.83	0.00	7.72	1.72	6.82	0.00	5.24	8.16	6.98	NA	8.45	0.00	6.85	3.36	7.88	4.52	0.110072	0.663989
N	cassette	EIF4G3	chr1	-	chr1:21133994-21139650	chr1:21133994-21137230;chr1:21137378-21139650		chr1:21137231-21137377			90.48	100.00	96.88	NA	86.67	NA	92.11	96.43	100.00	NA	94.29	100.00	90.32	NA	NA	NA	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	NA	90.00	96.77	NA	100.00	NA	84.62	97.37	100.00	100.00	88.00	NA	100.00	90.48	-9.52	0.261776	0.709176
K	alternative_donor	HLA-A	chr6	+	chr6:29912394-29912835	chr6:29912412-29912835		chr6:29912394-29912411	chr6:29912393-29912394		24.68	26.47	24.58	26.89	25.40	27.79	0.11	0.23	0.23	0.20	0.13	0.16	0.09	0.22	0.27	0.25	0.17	0.21	0.03	0.38	0.28	0.12	0.07	0.22	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.96	0.27	1.13	0.95	1.23	0.10	0.30	0.20	0.986346	0.996794
K	intron_retention	GNAS	chr20	+	chr20:57466875-57484821				chr20:57466874-57466875;chr20:57484821-57484822		71.07	64.29	72.29	74.36	66.67	51.61	77.29	77.03	83.13	82.20	78.09	75.63	78.11	80.36	76.39	73.33	74.42	75.53	64.62	78.95	79.45	82.65	83.55	79.85	56.76	74.55	66.27	84.04	74.66	83.13	78.75	79.45	66.67	78.29	73.05	74.87	65.65	77.89	12.24	0.094454	1.000000
N	intron_retention		chr11	+	chr11:65348798-65351062				chr11:65348797-65348798;chr11:65351062-65351063		100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	100.00	100.00	100.00	100.00	92.31	96.83	97.44	93.75	97.30	100.00	NA	100.00	100.00	NA	100.00	NA	100.00	100.00	94.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.805311	1.000000
K	intron_retention	FTSJ3	chr17	-	chr17:61898476-61898713				chr17:61898475-61898476;chr17:61898713-61898714		0.00	0.00	2.86	NA	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.25	0.00	0.00	2.70	6.25	0.00	0.00	0.00	0.00	0.00	0.00	4.17	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.608000	1.000000
N	jcn_only_AA	VPS28	chr8	-	chr8:145650424-145651065;chr8:145650435-145651065	chr8:145650384-145651065		chr8:145650384-145650423;chr8:145650424-145650434	chr8:145650383-145650384;chr8:145650423-145650424		13.89	21.47	16.13	13.11	14.67	15.79	8.65	6.86	10.43	9.89	9.22	8.22	15.00	7.41	4.82	10.38	12.05	5.00	17.58	18.97	11.27	8.33	14.84	11.11	17.24	10.89	8.33	8.89	13.47	12.50	18.03	16.98	18.18	12.33	11.11	11.46	17.41	12.39	-5.02	0.212179	0.663989
K	alternative_first_exon	PSMB8	chr6	-	chr6:32810867-32812055	chr6:32810867-32811626	chr6:32812056-32812480	chr6:32811627-32811824			95.21	98.28	91.18	94.12	94.74	92.68	96.26	94.37	94.59	92.31	93.62	91.95	95.65	93.49	93.68	93.51	96.74	85.61	94.29	94.88	94.79	92.86	96.10	88.60	100.00	93.69	93.96	91.86	97.44	93.75	92.21	91.94	88.89	90.91	93.62	91.00	95.96	94.03	-1.93	0.369003	0.548133
N	jcn_only_AA	APOBEC3H	chr22	+	chr22:50857892-50860687	chr22:50857892-50860682		chr22:50860683-50860687	chr22:50860687-50860688		92.68	100.00	95.16	NA	100.00	NA	100.00	100.00	100.00	93.75	100.00	NA	100.00	100.00	100.00	100.00	100.00	NA	NA	90.00	100.00	100.00	100.00	95.65	NA	92.11	93.02	92.31	94.74	100.00	96.77	90.48	100.00	93.33	90.62	100.00	100.00	94.72	-5.28	0.042041	0.663989
K	alternative_last_exon	RPL28	chr19	+	chr19:55898062-55899302;chr19:55898062-55898652;chr19:55898062-55898134	chr19:55898062-55899297	chr19:55898653-55898978;chr19:55898135-55898599	chr19:55899298-55900256			90.32	97.85	92.04	96.30	98.25	98.34	99.53	98.04	98.80	97.57	98.65	98.48	98.41	98.27	97.11	96.49	98.91	98.41	98.43	90.35	97.56	87.50	95.56	86.70	99.52	90.91	95.00	90.61	96.25	94.34	87.14	88.24	97.12	86.82	91.63	87.89	98.42	90.63	-7.79	0.023203	0.210459
K	jcn_only_AD	SEPW1	chr19	+	chr19:48282072-48283981	chr19:48283114-48283981		chr19:48282072-48283113	chr19:48282071-48282072		10.26	0.00	0.00	8.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	NA	0.00	0.00	4.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	5.00	0.00	0.00	0.00	0.231841	0.657607
K	intron_retention		chr2	+	chr2:131130057-131130445				chr2:131130056-131130057;chr2:131130445-131130446		7.69	10.71	7.14	NA	NA	NA	0.00	11.11	6.67	4.55	3.45	0.00	5.05	18.18	9.52	0.00	0.00	NA	0.00	10.00	NA	NA	4.35	NA	0.00	9.09	0.00	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	10.00	10.00	0.390643	1.000000
K	alternative_last_exon	DUSP6	chr12	-	chr12:89743339-89745416	chr12:89744803-89745416	chr12:89741009-89743338	chr12:89744365-89744802			97.66	73.33	99.42	NA	87.10	0.00	99.52	99.44	97.65	97.60	98.92	98.00	99.49	99.31	98.61	97.11	97.61	94.64	7.69	96.79	70.00	98.67	95.05	98.18	7.69	99.56	99.39	98.95	96.75	86.67	96.00	98.31	21.05	98.46	97.46	96.15	47.19	98.48	51.30	0.049704	0.234050
K	cassette	MARK2	chr11	+	chr11:63672516-63676348;chr11:63672516-63675731	chr11:63672516-63673559;chr11:63673587-63676348,chr11:63673587-63675731		chr11:63673560-63673586			13.89	0.00	8.00	NA	NA	NA	10.71	17.78	2.56	4.35	9.30	6.90	6.06	10.00	11.76	7.50	2.00	9.68	NA	15.15	11.11	20.00	8.00	5.26	NA	13.04	16.28	0.00	9.09	7.14	11.76	11.63	16.67	6.90	9.38	9.38	8.38	13.46	5.08	0.237135	0.709176
N	cassette	RIN3	chr14	+	chr14:93125815-93151331	chr14:93125815-93142819;chr14:93142952-93151331		chr14:93142820-93142951			100.00	100.00	100.00	100.00	97.06	NA	97.09	100.00	100.00	96.67	97.58	100.00	96.00	100.00	NA	100.00	96.27	100.00	100.00	100.00	100.00	100.00	98.48	100.00	100.00	92.31	100.00	100.00	100.00	100.00	NA	94.87	100.00	100.00	97.33	100.00	100.00	100.00	0.00	0.828737	0.942757
K	intron_retention	AKR1B1	chr7	-	chr7:134132134-134132731				chr7:134132133-134132134;chr7:134132731-134132732		5.19	2.21	6.40	3.77	1.09	0.00	0.00	1.92	2.46	0.00	0.00	0.00	2.54	3.48	4.96	0.00	0.00	0.00	2.42	6.38	2.97	4.95	0.62	2.63	6.02	11.11	6.43	4.72	2.75	0.73	6.61	7.24	3.36	7.52	4.92	3.74	2.48	5.79	3.31	0.499090	1.000000
N	intron_retention		chr19	+	chr19:2271954-2272691				chr19:2271953-2271954;chr19:2272691-2272692		100.00	100.00	100.00	NA	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	93.10	100.00	100.00	NA	100.00	NA	84.62	100.00	94.44	NA	NA	NA	91.30	100.00	100.00	NA	84.62	100.00	96.55	100.00	3.45	0.684596	1.000000
N	alternative_acceptor	FMNL1,RNF213	chr17	+	chr17:43317993-43318495	chr17:43317993-43318452		chr17:43318453-43318495	chr17:43318495-43318496		2.73	3.64	3.88	NA	3.92	NA	0.00	0.69	1.00	0.00	0.68	0.00	1.14	1.08	2.61	0.00	0.98	0.00	6.25	1.09	2.08	3.92	3.45	5.41	8.82	2.72	3.30	1.79	2.88	0.00	1.94	4.93	4.00	4.85	3.87	2.94	3.82	1.52	-2.31	0.151999	0.656268
K	alternative_donor	ZC3H18	chr16	+	chr16:88643784-88653007	chr16:88644135-88653007		chr16:88643784-88644134	chr16:88643783-88643784		100.00	100.00	100.00	NA	NA	NA	100.00	89.47	100.00	100.00	100.00	100.00	90.32	95.45	88.57	95.92	100.00	92.59	NA	88.89	NA	100.00	92.31	92.86	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	NA	91.30	90.91	93.94	100.00	95.45	-4.55	0.438610	0.698509
K	intron_retention	NOP56	chr20	+	chr20:2637865-2638574				chr20:2637864-2637865;chr20:2638574-2638575		3.12	5.66	8.33	2.80	3.80	3.00	1.67	0.00	0.00	0.00	1.35	0.00	1.27	0.00	0.00	1.15	2.27	0.00	4.91	2.63	4.30	4.35	6.90	5.33	3.38	4.17	6.38	1.52	4.88	4.08	6.52	7.14	5.77	3.03	5.48	6.78	4.14	2.88	-1.27	0.436475	1.000000
K	intron_retention	NOSIP	chr19	-	chr19:50059994-50060131				chr19:50059993-50059994;chr19:50060131-50060132		4.51	6.21	3.45	4.62	2.13	4.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	3.65	4.08	2.55	5.56	6.10	4.76	1.45	1.83	5.36	0.00	2.00	2.90	6.15	6.37	4.55	0.00	5.56	4.69	2.55	2.96	0.41	0.987482	1.000000
K	jcn_only_AD	MRPL51	chr12	-	chr12:6602139-6602624;chr12:6602139-6602223;chr12:6602139-6602839	chr12:6602139-6602882		chr12:6602224-6602624;chr12:6602625-6602839;chr12:6602840-6602882	chr12:6602624-6602625;chr12:6602839-6602840;chr12:6602882-6602883		10.23	9.78	10.81	12.68	11.05	22.54	9.55	6.52	5.41	17.92	12.73	21.21	14.22	7.14	5.77	3.62	7.32	6.41	5.63	3.70	5.11	0.68	3.42	2.04	7.39	4.65	7.53	4.79	5.95	3.47	3.61	7.32	8.38	10.28	7.30	8.18	8.96	5.58	-3.38	0.071689	0.605417
K	intron_retention	VPS16	chr20	+	chr20:2846142-2846857				chr20:2846141-2846142;chr20:2846857-2846858		10.42	7.08	9.26	8.00	9.64	3.70	0.00	0.00	0.00	0.00	3.45	0.00	2.56	0.00	1.89	0.00	0.00	0.00	7.87	2.56	6.19	11.11	10.91	4.76	2.06	2.17	9.86	6.67	6.12	4.76	4.17	10.45	5.93	12.50	8.00	15.38	4.25	2.37	-1.88	0.808777	1.000000
N	alternative_donor	CLASRP	chr19	+	chr19:45571379-45571677;chr19:45571317-45571677	chr19:45571313-45571677		chr19:45571313-45571316;chr19:45571317-45571378	chr19:45571312-45571313;chr19:45571316-45571317		32.35	27.18	31.25	32.14	25.53	30.77	NA	NA	63.64	80.00	75.00	NA	64.71	45.45	52.63	78.57	83.33	NA	31.34	33.33	45.24	58.33	46.88	27.78	28.12	36.84	41.94	38.46	56.25	38.89	22.58	34.92	23.33	42.31	29.17	35.29	28.12	33.33	5.21	0.925032	0.984606
K	alternative_acceptor	ATP6V1G2-DDX39B,DDX39B	chr6	-	chr6:31498956-31499072	chr6:31498975-31499072		chr6:31498956-31498974	chr6:31498955-31498956		89.08	89.13	90.67	90.72	91.57	85.85	96.00	92.59	91.11	96.49	91.43	97.30	96.00	87.10	94.64	91.67	95.95	96.97	89.76	92.63	94.16	92.65	90.78	88.75	90.14	89.29	91.84	92.42	87.61	86.17	86.00	91.72	91.11	91.53	91.67	86.11	90.62	89.19	-1.44	0.162155	0.660713
N	cassette	AP5Z1	chr7	+	chr7:4827408-4828470	chr7:4827408-4827784;chr7:4827926-4828470		chr7:4827785-4827925			92.50	100.00	91.49	100.00	91.43	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	91.67	92.31	100.00	90.91	90.91	100.00	100.00	95.74	97.50	100.00	100.00	100.00	92.86	90.16	76.00	100.00	91.89	96.15	100.00	94.30	-5.70	0.828308	0.942757
N	alternative_acceptor	DPM2	chr9	-	chr9:130697594-130698831	chr9:130698060-130698831		chr9:130697594-130698059	chr9:130697593-130697594		90.70	96.30	93.02	97.78	94.38	94.44	94.34	86.96	91.18	95.12	90.16	96.15	100.00	100.00	100.00	100.00	96.92	100.00	81.82	80.56	92.11	100.00	89.09	84.00	89.74	84.62	92.86	94.87	96.72	92.00	90.91	90.70	89.02	96.88	93.62	95.24	92.04	88.83	-3.21	0.458429	0.761890
N	cassette	STAB1	chr3	+	chr3:52536245-52537014	chr3:52536245-52536647;chr3:52536744-52537014		chr3:52536648-52536743			93.62	97.30	96.30	NA	100.00	100.00	99.74	100.00	100.00	99.57	99.19	99.57	100.00	100.00	100.00	98.90	99.33	99.06	100.00	94.74	NA	98.44	98.14	98.28	98.47	100.00	100.00	97.92	98.11	100.00	NA	100.00	100.00	96.64	96.63	98.38	99.87	100.00	0.13	0.344601	0.709176
N	alternative_acceptor	PLEK	chr2	+	chr2:68621309-68622745;chr2:68621309-68622811;chr2:68621309-68622815	chr2:68621309-68621748		chr2:68621749-68622745;chr2:68622746-68622811;chr2:68622812-68622815	chr2:68622745-68622746;chr2:68622811-68622812;chr2:68622815-68622816		1.00	0.00	1.27	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.90	0.00	0.60	0.93	0.36	10.00	0.67	0.00	0.45	0.00	0.00	0.00	0.00	0.00	0.78	0.80	0.37	0.00	0.34	0.34	0.477101	0.777631
N	alternative_acceptor	AURKAIP1	chr1	-	chr1:1309738-1310084;chr1:1309971-1310084;chr1:1309742-1310084	chr1:1309826-1310084		chr1:1309738-1309741;chr1:1309742-1309825;chr1:1309826-1309970	chr1:1309737-1309738;chr1:1309741-1309742;chr1:1309825-1309826		95.16	96.65	96.20	95.59	95.12	93.67	90.48	94.87	94.12	92.86	94.12	93.33	99.05	100.00	98.11	98.89	98.78	96.77	95.60	92.73	96.92	90.00	94.23	89.29	94.62	97.50	95.89	93.02	96.00	90.00	89.74	91.57	92.52	93.62	93.44	93.33	95.11	95.02	-0.09	0.927056	0.978996
N	jcn_only_AA	RP11-24F11.2	chr3	-	chr3:46408776-46412734;chr3:46408772-46412734	chr3:46406537-46412734		chr3:46406537-46408771;chr3:46408772-46408775	chr3:46406536-46406537;chr3:46408771-46408772		100.00	100.00	96.00	NA	86.11	100.00	85.29	100.00	100.00	88.89	95.92	84.62	100.00	92.31	90.00	70.59	94.74	85.71	100.00	90.70	92.00	93.75	80.00	77.78	100.00	87.93	92.31	96.30	89.83	95.45	88.89	77.78	100.00	87.50	90.00	69.23	100.00	91.50	-8.50	0.227405	0.663989
K	alternative_last_exon	MMP24-AS1	chr20	-	chr20:33859949-33865811	chr20:33865736-33865811	chr20:33859808-33859948	chr20:33864953-33865735			100.00	91.67	94.12	100.00	96.97	100.00	87.10	93.55	81.48	92.86	100.00	100.00	91.43	97.22	92.86	97.22	93.33	100.00	100.00	100.00	95.12	100.00	100.00	100.00	100.00	96.00	89.47	91.67	92.86	93.10	100.00	87.50	100.00	100.00	92.86	100.00	95.84	98.61	2.77	0.316699	0.518996
N	alternative_donor	PRMT2	chr21	+	chr21:48056448-48056807;chr21:48055676-48056807	chr21:48056460-48056807		chr21:48055676-48056447;chr21:48056448-48056459	chr21:48055675-48055676;chr21:48056447-48056448		23.53	46.15	38.89	NA	40.00	NA	38.24	47.83	50.00	41.67	39.29	42.31	45.45	54.17	36.67	55.00	60.00	52.38	NA	25.00	15.79	30.77	31.58	63.64	NA	38.89	46.15	33.33	54.55	45.00	16.67	28.57	23.08	40.00	38.46	50.00	41.84	31.95	-9.90	0.645213	0.839864
N	jcn_only_AD	CPT2	chr1	+	chr1:53676992-53678935;chr1:53676923-53678935	chr1:53678489-53678935		chr1:53676923-53676991;chr1:53676992-53678488	chr1:53676922-53676923;chr1:53676991-53676992		7.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.26	6.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.00	0.00	0.00	2.56	0.00	0.00	0.00	3.28	0.00	0.00	0.00	0.00	3.08	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.185199	0.657607
N	alternative_acceptor	CYTH2	chr19	+	chr19:48978207-48981322;chr19:48978207-48980973	chr19:48978207-48981325		chr19:48980974-48981322;chr19:48981323-48981325	chr19:48981322-48981323;chr19:48981325-48981326		59.02	59.09	60.32	62.07	56.76	52.17	75.76	69.70	64.86	71.05	60.61	72.97	69.23	67.27	60.00	69.09	73.17	67.86	65.62	62.75	52.27	72.41	57.45	72.00	52.94	62.12	64.06	61.76	60.53	62.50	50.00	53.57	54.29	67.74	65.71	61.54	62.36	62.44	0.08	0.831426	0.940678
K	cassette	UFC1	chr1	+	chr1:161127484-161128201	chr1:161127484-161127910;chr1:161128002-161128201		chr1:161127911-161128001			75.32	72.09	77.39	80.56	78.65	88.24	96.32	96.55	95.15	92.68	95.50	94.44	98.31	96.92	89.52	94.74	93.65	100.00	73.42	80.77	89.34	85.71	84.78	88.10	82.89	83.33	83.21	95.65	89.36	94.83	76.92	77.97	66.67	80.95	88.00	79.22	78.16	82.05	3.89	0.627054	0.864183
N	jcn_only_AA	MAN1B1	chr9	+	chr9:140001900-140001989;chr9:140001900-140001982	chr9:140001900-140001993		chr9:140001983-140001989;chr9:140001990-140001993	chr9:140001989-140001990;chr9:140001993-140001994		10.20	0.00	7.84	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.41	5.00	1.56	0.00	2.86	0.00	4.76	7.69	11.36	0.00	2.56	0.00	18.18	10.91	6.90	3.33	0.00	4.88	2.38	6.35	3.97	0.259339	0.663989
K	alternative_acceptor	STK11IP	chr2	+	chr2:220480064-220480765	chr2:220480064-220480428		chr2:220480429-220480765	chr2:220480765-220480766		0.00	1.68	0.00	0.00	2.08	2.94	0.00	0.00	NA	NA	0.00	NA	0.00	NA	NA	0.00	0.00	NA	2.99	0.00	0.00	0.00	2.94	7.69	0.00	8.33	6.25	0.00	0.00	9.09	0.00	0.00	2.86	0.00	0.00	6.67	0.84	0.00	-0.84	0.825363	0.940668
N	alternative_donor	PML	chr15	+	chr15:74330297-74335329;chr15:74326947-74335329;chr15:74333912-74335329	chr15:74326872-74335329		chr15:74326872-74326946;chr15:74326947-74330296;chr15:74330297-74333911	chr15:74326871-74326872;chr15:74326946-74326947;chr15:74330296-74330297		77.27	91.67	82.05	84.62	90.91	94.20	88.89	82.22	84.09	62.07	NA	44.44	85.71	74.15	82.71	69.64	69.23	41.51	100.00	85.44	91.18	NA	NA	67.61	92.86	77.94	87.10	71.43	NA	74.40	81.65	84.29	94.74	67.39	81.82	66.29	92.27	79.80	-12.47	0.000788	0.083733
K	intron_retention		chr3	-	chr3:129150422-129151345				chr3:129150421-129150422;chr3:129151345-129151346		35.53	36.96	46.81	14.29	28.79	30.77	3.12	7.69	4.17	7.14	7.35	NA	7.50	3.23	3.45	5.88	6.41	NA	37.33	38.71	24.18	13.33	32.14	NA	25.64	32.73	34.78	26.32	24.17	15.00	47.37	47.95	33.33	31.43	38.32	42.11	29.48	34.13	4.64	0.779630	1.000000
K	intron_retention	RFNG	chr17	-	chr17:80007719-80007793				chr17:80007718-80007719;chr17:80007793-80007794		51.85	46.15	41.67	NA	50.00	NA	0.00	0.00	0.00	0.00	5.56	NA	3.45	NA	6.25	0.00	0.00	NA	50.00	50.00	45.83	NA	41.67	NA	100.00	25.00	45.83	NA	46.15	NA	33.33	53.85	37.50	NA	50.00	NA	41.83	33.33	-8.50	0.982254	1.000000
K	intron_retention	TSC22D4	chr7	-	chr7:100064792-100065174				chr7:100064791-100064792;chr7:100065174-100065175		3.80	4.11	3.88	7.69	4.00	2.13	1.02	1.19	0.00	0.00	0.86	1.45	1.15	0.62	0.00	0.00	0.89	0.00	3.68	4.03	3.33	3.57	5.06	0.00	7.24	1.97	2.90	1.89	4.71	3.57	4.46	3.96	4.96	3.03	2.27	3.66	3.90	2.88	-1.01	0.932340	1.000000
N	alternative_acceptor	NMB	chr15	-	chr15:85200580-85201226	chr15:85200774-85201226		chr15:85200580-85200773	chr15:85200579-85200580		0.00	2.38	0.00	4.17	7.69	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	6.67	0.00	0.00	0.00	0.00	3.12	10.00	4.00	3.70	4.35	3.33	0.00	0.00	0.00	0.680094	0.880186
K	intron_retention	NIPBL	chr5	+	chr5:37064081-37064628				chr5:37064080-37064081;chr5:37064628-37064629		15.38	22.22	20.51	21.43	18.52	20.00	9.09	35.29	28.57	30.00	29.41	25.00	21.43	NA	35.71	45.45	26.32	40.00	16.67	18.52	25.00	21.43	9.68	22.22	8.33	21.74	12.00	18.75	12.90	23.81	18.52	18.42	20.00	15.62	23.08	22.22	18.34	18.52	0.18	0.794301	1.000000
K	alternative_acceptor	CNOT3	chr19	+	chr19:54657578-54658995;chr19:54657578-54659046	chr19:54657578-54657680		chr19:54657681-54658995;chr19:54658996-54659046	chr19:54658995-54658996;chr19:54659046-54659047		13.89	16.39	12.50	6.52	10.42	4.60	6.67	7.69	8.33	0.00	4.76	4.35	4.76	5.88	6.25	3.45	5.00	6.25	7.04	14.29	12.50	5.88	17.24	10.00	13.46	13.64	14.29	8.70	9.38	5.77	10.26	15.09	9.09	21.05	18.18	12.82	8.06	11.95	3.88	0.570206	0.834831
K	alternative_first_exon	FKBP8	chr19	-	chr19:18652806-18654718;chr19:18652806-18654295	chr19:18652806-18653697	chr19:18654296-18654470	chr19:18653698-18653782			4.41	0.00	0.00	NA	5.00	NA	1.49	2.33	2.44	2.63	3.12	2.33	0.00	0.00	2.78	0.00	3.64	0.00	0.00	2.08	2.22	5.26	3.77	4.55	0.00	0.00	1.67	3.57	4.26	3.70	2.94	2.50	3.45	0.00	0.00	6.06	0.00	2.21	2.21	0.241173	0.452670
K	alternative_acceptor	DDX39A	chr19	-	chr19:14523491-14523824	chr19:14523524-14523824		chr19:14523491-14523523	chr19:14523490-14523491		10.87	4.65	1.89	5.56	0.00	NA	2.50	4.55	3.85	0.00	1.22	0.00	1.18	0.00	3.23	0.98	0.00	0.00	7.14	2.27	5.26	3.45	2.41	6.25	NA	4.76	2.78	2.27	1.75	3.70	6.25	2.63	0.00	1.49	1.18	4.84	2.50	4.65	2.15	0.414623	0.729195
K	alternative_first_exon	ADSL,RP5-1042K10.14	chr22	+	chr22:40760370-40762439	chr22:40761061-40762439	chr22:40760280-40760369	chr22:40760884-40761060			85.71	88.55	82.76	90.57	86.25	88.89	94.87	95.24	91.30	84.21	84.21	78.95	94.12	100.00	94.12	88.57	82.93	70.59	91.53	88.46	92.00	90.32	91.67	85.19	93.53	94.74	96.67	85.29	91.84	90.00	96.00	95.83	89.15	96.97	92.68	92.68	92.53	94.99	2.46	0.578690	0.694025
N	jcn_only_AA	MGAT4B	chr5	-	chr5:179228720-179228783;chr5:179228693-179228783;chr5:179228678-179228783	chr5:179228695-179228783		chr5:179228678-179228692;chr5:179228693-179228694;chr5:179228695-179228719	chr5:179228677-179228678;chr5:179228692-179228693;chr5:179228694-179228695		95.00	100.00	91.67	NA	90.48	NA	97.89	96.30	100.00	95.00	97.67	100.00	96.70	92.31	100.00	100.00	100.00	100.00	100.00	94.87	100.00	100.00	100.00	100.00	100.00	100.00	93.10	100.00	96.08	100.00	89.29	100.00	NA	95.92	98.08	91.43	100.00	94.94	-5.06	0.034069	0.663989
K	cassette	ETFA	chr15	-	chr15:76584855-76603690;chr15:76584855-76587931	chr15:76584855-76584959;chr15:76585042-76587931,chr15:76585042-76603690		chr15:76584960-76585041			95.92	100.00	98.48	100.00	96.30	NA	99.19	96.36	92.42	91.86	97.17	98.80	97.73	93.75	96.10	95.24	97.22	98.48	100.00	95.24	96.77	97.92	95.92	96.49	NA	94.12	100.00	93.48	91.43	89.29	92.00	92.73	100.00	97.26	93.62	98.04	100.00	94.68	-5.32	0.000242	0.050057
N	alternative_last_exon	TXNDC9	chr2	-	chr2:99936263-99943997	chr2:99938673-99943997	chr2:99935445-99936262	chr2:99937997-99938672			100.00	91.67	100.00	NA	94.12	80.00	100.00	100.00	100.00	95.83	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	NA	100.00	92.86	100.00	100.00	100.00	8.33	100.00	100.00	93.33	95.00	93.75	95.00	96.00	NA	100.00	100.00	100.00	95.84	100.00	4.16	0.358087	0.535374
K	intron_retention		chr1	-	chr1:153949252-153949451				chr1:153949251-153949252;chr1:153949451-153949452		7.11	6.68	8.15	12.00	6.04	9.84	1.92	1.01	1.90	1.43	2.27	1.04	3.23	0.93	4.90	1.57	1.59	0.00	8.05	10.29	6.54	11.49	8.37	15.62	10.92	11.32	9.28	6.06	6.97	10.83	11.03	12.87	7.69	7.56	7.89	13.91	7.19	8.70	1.51	0.834726	1.000000
K	intron_retention		chr12	+	chr12:57923458-57923716				chr12:57923457-57923458;chr12:57923716-57923717		89.13	95.00	92.45	92.50	94.74	88.57	95.00	81.82	100.00	100.00	100.00	NA	95.00	100.00	94.12	100.00	95.45	NA	85.14	91.18	84.48	100.00	100.00	100.00	85.87	93.10	88.89	100.00	100.00	87.50	88.71	86.36	87.80	90.62	93.10	94.44	91.40	90.16	-1.25	0.942467	1.000000
N	jcn_only_AA	PLIN2	chr9	-	chr9:19108746-19116356;chr9:19108724-19116356	chr9:19108761-19116356					0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	NA	NA	0.00	NA	NA	NA	NA	NA	NA	NA	0.00	0.00	0.00	0.00	0.00	0.00	6.49	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.373901	0.663989
N	jcn_only_AA	ATG4B,USP39	chr2	+	chr2:242610821-242611605	chr2:242610821-242610912		chr2:242610913-242611605	chr2:242611605-242611606		8.51	0.00	0.00	2.44	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	8.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	0.00	0.00	0.247448	0.663989
N	alternative_acceptor	FLYWCH1,RNF40	chr16	+	chr16:2988458-2990032	chr16:2988458-2989828		chr16:2989829-2990032	chr16:2990032-2990033		0.00	4.35	3.85	NA	NA	NA	0.00	0.00	0.00	NA	NA	NA	0.00	0.00	0.00	NA	0.00	NA	0.00	0.00	0.00	NA	5.88	NA	4.17	0.00	0.00	NA	0.00	NA	0.00	0.00	3.45	0.00	0.00	NA	1.73	0.00	-1.73	0.077602	0.585944
K	alternative_acceptor	PILRB,STAG3L5P-PVRIG2P-PILRB	chr7	+	chr7:99955990-99956312;chr7:99955990-99956555	chr7:99955990-99956521		chr7:99956313-99956521;chr7:99956522-99956555	chr7:99956521-99956522;chr7:99956555-99956556		3.33	0.00	6.38	0.00	4.35	NA	7.14	10.53	9.52	NA	NA	NA	0.00	3.12	2.56	6.90	NA	NA	5.88	6.52	13.51	0.00	3.23	0.00	0.00	1.52	1.56	8.00	5.56	13.95	0.00	14.63	7.69	11.76	5.56	14.29	2.94	3.23	0.29	0.750929	0.907791
K	intron_retention	IDH3B	chr20	-	chr20:2639169-2639404				chr20:2639168-2639169;chr20:2639404-2639405		72.73	68.29	84.62	79.10	73.47	69.06	84.62	100.00	73.33	70.00	83.33	69.57	83.33	75.00	96.77	71.11	74.42	68.42	76.77	72.73	80.58	64.86	80.90	80.77	76.72	88.24	85.71	82.93	85.00	78.33	75.00	80.43	81.37	81.82	78.57	79.07	79.07	75.00	-4.07	0.752366	1.000000
N	jcn_only_AA	GLB1	chr3	-	chr3:33086962-33087611;chr3:33087282-33087611	chr3:33065818-33087611		chr3:33065818-33086961;chr3:33086962-33087281	chr3:33065817-33065818;chr3:33086961-33086962		100.00	100.00	100.00	100.00	97.67	NA	100.00	100.00	100.00	100.00	100.00	100.00	99.21	100.00	100.00	100.00	99.30	100.00	NA	100.00	95.00	98.41	99.22	100.00	NA	100.00	100.00	100.00	98.88	100.00	100.00	100.00	100.00	99.02	97.92	100.00	100.00	100.00	0.00	0.391002	0.663989
N	alternative_donor	AL136419.6,CHMP4A,RP11-468E2.1	chr14	-	chr14:24681036-24681756;chr14:24681036-24682229;chr14:24681036-24682614;chr14:24681036-24683199	chr14:24681036-24681971		chr14:24681757-24681971;chr14:24681972-24682229;chr14:24682230-24682614;chr14:24682615-24683199	chr14:24681971-24681972;chr14:24682229-24682230;chr14:24682614-24682615;chr14:24683199-24683200		0.00	0.00	5.26	NA	9.09	NA	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	0.00	0.00	5.88	NA	4.35	NA	NA	7.69	5.88	0.00	0.00	0.00	0.00	5.56	9.09	NA	8.33	8.33	0.00	0.00	0.00	0.815937	0.942369
K	intron_retention		chr2	-	chr2:73957864-73959289				chr2:73957863-73957864;chr2:73959289-73959290		7.41	4.35	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.26	0.00	5.00	0.00	0.00	0.00	5.77	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.50	0.00	5.88	3.57	1.82	3.23	2.27	3.45	3.04	2.00	-1.04	0.243404	1.000000
N	cassette	RPS6KA1	chr1	+	chr1:26898417-26899714	chr1:26898417-26898666;chr1:26898785-26899714		chr1:26898667-26898784			97.67	100.00	97.50	100.00	94.55	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	98.75	94.55	95.74	97.22	100.00	92.31	98.15	100.00	100.00	96.41	100.00	100.00	100.00	100.00	95.83	100.00	95.00	97.67	97.37	100.00	100.00	0.00	0.874400	0.956379
K	jcn_only_AD	C14orf159	chr14	+	chr14:91671170-91681748	chr14:91671212-91681748		chr14:91671170-91671211	chr14:91671169-91671170		0.00	0.00	NA	NA	0.00	NA	0.00	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	13.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NA	0.00	0.00	4.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.363217	0.657607
N	cassette	DGKA	chr12	+	chr12:56346216-56346823	chr12:56346216-56346517;chr12:56346717-56346823		chr12:56346518-56346716			100.00	100.00	100.00	NA	100.00	NA	NA	100.00	100.00	NA	NA	NA	100.00	100.00	100.00	NA	100.00	NA	100.00	100.00	97.87	NA	100.00	NA	100.00	100.00	100.00	NA	100.00	NA	90.91	96.97	100.00	100.00	100.00	100.00	100.00	100.00	0.00	0.363217	0.709176
