External dependencies
---------------------

The following external dependencies can be obtained using pip.

hdf5storage
lxml
matplotlib
numpy
scipy
tifffile
tqdm

The following external dependencies can be resolved as follows:

ffmpeg: Install the FFmpeg binaries (e.g. sudo apt install ffmpeg on Debian/Ubuntu, brew install ffmpeg on OS X, etc).
Then add python bindings with pip install ffmpeg-python

munkres: Downaload and install the Cython munkres library from https://github.com/jfrelinger/cython-munkres-wrapper
The code uses this routine extensively, and processing speed is much improved by using a native implementation.
Alternatively, with a small change in syntax, you can use scipy.optimize.linear_sum_assignment to the same effect.

